/************************************************************************** * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. * * * * Author: The ALICE Off-line Project. * * Contributors are mentioned in the code where appropriate. * * * * Permission to use, copy, modify and distribute this software and its * * documentation strictly for non-commercial purposes is hereby granted * * without fee, provided that the above copyright notice appears in all * * copies and that both the copyright notice and this permission notice * * appear in the supporting documentation. The authors make no claims * * about the suitability of this software for any purpose. It is * * provided "as is" without express or implied warranty. * **************************************************************************/ /* $Id$ */ // Author: Andrei Gheata, 31/05/2006 //============================================================================== // AliAnalysisManager - Manager analysis class. Allows creation of several // analysis tasks and data containers storing their input/output. Allows // connecting/chaining tasks via shared data containers. Serializes the current // event for all tasks depending only on initial input data. //============================================================================== // //============================================================================== #include "AliAnalysisManager.h" #include <cerrno> #include <Riostream.h> #include <TError.h> #include <TMap.h> #include <TClass.h> #include <TFile.h> #include <TTreeCache.h> #include <TEnv.h> #include <TMath.h> #include <TH1.h> #include <TMethodCall.h> #include <TChain.h> #include <TSystem.h> #include <TROOT.h> #include <TCanvas.h> #include <TStopwatch.h> #include "AliLog.h" #include "AliAnalysisSelector.h" #include "AliAnalysisGrid.h" #include "AliAnalysisTask.h" #include "AliAnalysisDataContainer.h" #include "AliAnalysisDataSlot.h" #include "AliVEventHandler.h" #include "AliVEventPool.h" #include "AliSysInfo.h" #include "AliAnalysisStatistics.h" #include "AliVEvent.h" #include "AliHLTTestInputHandler.h" using std::ofstream; using std::ios; using std::cout; using std::endl; ClassImp(AliAnalysisManager) AliAnalysisManager *AliAnalysisManager::fgAnalysisManager = NULL; TString AliAnalysisManager::fgCommonFileName = ""; TString AliAnalysisManager::fgMacroNames = ""; Int_t AliAnalysisManager::fPBUpdateFreq = 1; //______________________________________________________________________________ AliAnalysisManager::AliAnalysisManager(const char *name, const char *title) :TNamed(name,title), fTree(0), fInputEventHandler(0), fOutputEventHandler(0), fMCtruthEventHandler(0), fEventPool(0), fCurrentEntry(-1), fNSysInfo(0), fMode(kLocalAnalysis), fInitOK(kFALSE), fMustClean(kFALSE), fIsRemote(kFALSE), fLocked(kFALSE), fMCLoop(kFALSE), fDebug(0), fSpecialOutputLocation(""), fTasks(0), fTopTasks(0), fZombies(0), fContainers(0), fInputs(0), fOutputs(0), fParamCont(0), fExchangeCont(0), fDebugOptions(0), fFileDescriptors(new TObjArray()), fCurrentDescriptor(0), fCommonInput(0), fCommonOutput(0), fSelector(0), fGridHandler(0), fExtraFiles(), fFileInfoLog(), fAutoBranchHandling(kTRUE), fAsyncReading(kFALSE), // default prefetching on fTable(), fRunFromPath(0), fNcalls(0), fMaxEntries(0), fCacheSize(100000000), // default 100 MB fStatisticsMsg(), fRequestedBranches(), fStatistics(0), fGlobals(0), fIOTimer(0), fCPUTimer(0), fInitTimer(0), fIOTime(0), fCPUTime(0), fInitTime(0) { // Default constructor. fgAnalysisManager = this; fgCommonFileName = "AnalysisResults.root"; if (TClass::IsCallingNew() != TClass::kDummyNew) { fTasks = new TObjArray(); fTopTasks = new TObjArray(); fZombies = new TObjArray(); fContainers = new TObjArray(); fInputs = new TObjArray(); fOutputs = new TObjArray(); fParamCont = new TObjArray(); fExchangeCont = new TObjArray(); fGlobals = new TMap(); } fIOTimer = new TStopwatch(); fCPUTimer = new TStopwatch(); fInitTimer = new TStopwatch(); SetEventLoop(kTRUE); } //______________________________________________________________________________ AliAnalysisManager::AliAnalysisManager(const AliAnalysisManager& other) :TNamed(other), fTree(NULL), fInputEventHandler(NULL), fOutputEventHandler(NULL), fMCtruthEventHandler(NULL), fEventPool(NULL), fCurrentEntry(-1), fNSysInfo(0), fMode(other.fMode), fInitOK(other.fInitOK), fMustClean(other.fMustClean), fIsRemote(other.fIsRemote), fLocked(other.fLocked), fMCLoop(other.fMCLoop), fDebug(other.fDebug), fSpecialOutputLocation(""), fTasks(NULL), fTopTasks(NULL), fZombies(NULL), fContainers(NULL), fInputs(NULL), fOutputs(NULL), fParamCont(NULL), fExchangeCont(NULL), fDebugOptions(NULL), fFileDescriptors(new TObjArray()), fCurrentDescriptor(0), fCommonInput(NULL), fCommonOutput(NULL), fSelector(NULL), fGridHandler(NULL), fExtraFiles(other.fExtraFiles), fFileInfoLog(other.fFileInfoLog), fAutoBranchHandling(other.fAutoBranchHandling), fAsyncReading(other.fAsyncReading), fTable(), fRunFromPath(0), fNcalls(other.fNcalls), fMaxEntries(other.fMaxEntries), fCacheSize(other.fCacheSize), fStatisticsMsg(other.fStatisticsMsg), fRequestedBranches(other.fRequestedBranches), fStatistics(other.fStatistics), fGlobals(other.fGlobals), fIOTimer(new TStopwatch()), fCPUTimer(new TStopwatch()), fInitTimer(new TStopwatch()), fIOTime(0), fCPUTime(0), fInitTime(0) { // Copy constructor. fTasks = new TObjArray(*other.fTasks); fTopTasks = new TObjArray(*other.fTopTasks); fZombies = new TObjArray(*other.fZombies); fContainers = new TObjArray(*other.fContainers); fInputs = new TObjArray(*other.fInputs); fOutputs = new TObjArray(*other.fOutputs); fParamCont = new TObjArray(*other.fParamCont); fExchangeCont = new TObjArray(*other.fExchangeCont); fgCommonFileName = "AnalysisResults.root"; fgAnalysisManager = this; } //______________________________________________________________________________ AliAnalysisManager& AliAnalysisManager::operator=(const AliAnalysisManager& other) { // Assignment if (&other != this) { TNamed::operator=(other); fInputEventHandler = other.fInputEventHandler; fOutputEventHandler = other.fOutputEventHandler; fMCtruthEventHandler = other.fMCtruthEventHandler; fEventPool = other.fEventPool; fTree = NULL; fCurrentEntry = -1; fNSysInfo = other.fNSysInfo; fMode = other.fMode; fInitOK = other.fInitOK; fIsRemote = other.fIsRemote; fLocked = other.fLocked; fMCLoop = other.fMCLoop; fDebug = other.fDebug; fTasks = new TObjArray(*other.fTasks); fTopTasks = new TObjArray(*other.fTopTasks); fZombies = new TObjArray(*other.fZombies); fContainers = new TObjArray(*other.fContainers); fInputs = new TObjArray(*other.fInputs); fOutputs = new TObjArray(*other.fOutputs); fParamCont = new TObjArray(*other.fParamCont); fExchangeCont = new TObjArray(*other.fExchangeCont); fDebugOptions = NULL; fFileDescriptors = new TObjArray(); fCurrentDescriptor = 0; fCommonInput = NULL; fCommonOutput = NULL; fSelector = NULL; fGridHandler = NULL; fExtraFiles = other.fExtraFiles; fFileInfoLog = other.fFileInfoLog; fgCommonFileName = "AnalysisResults.root"; fgAnalysisManager = this; fAutoBranchHandling = other.fAutoBranchHandling; fAsyncReading = other.fAsyncReading; fTable.Clear("nodelete"); fRunFromPath = other.fRunFromPath; fNcalls = other. fNcalls; fMaxEntries = other.fMaxEntries; fCacheSize = other.fCacheSize; fStatisticsMsg = other.fStatisticsMsg; fRequestedBranches = other.fRequestedBranches; fStatistics = other.fStatistics; fGlobals = new TMap(); fIOTimer = new TStopwatch(); fCPUTimer = new TStopwatch(); fInitTimer = new TStopwatch(); fIOTime = 0.; fCPUTime = 0.; fInitTime = 0.; } return *this; } //______________________________________________________________________________ AliAnalysisManager::~AliAnalysisManager() { // Destructor. if (fTasks) {fTasks->Delete(); delete fTasks;} delete fTopTasks; delete fZombies; if (fContainers) {fContainers->Delete(); delete fContainers;} delete fInputs; delete fOutputs; delete fParamCont; delete fExchangeCont; delete fDebugOptions; delete fGridHandler; delete fInputEventHandler; delete fOutputEventHandler; delete fMCtruthEventHandler; delete fEventPool; if (fgAnalysisManager==this) fgAnalysisManager = NULL; if (fGlobals) {fGlobals->DeleteAll(); delete fGlobals;} if (fFileDescriptors) {fFileDescriptors->Delete(); delete fFileDescriptors;} delete fIOTimer; delete fCPUTimer; delete fInitTimer; } //______________________________________________________________________________ void AliAnalysisManager::CreateReadCache() { // Create cache for reading according fCacheSize and fAsyncReading. if (!fTree || !fTree->GetCurrentFile()) { Error("CreateReadCache","Current tree or tree file not yet defined"); return; } if (!fCacheSize) { if (fDebug) Info("CreateReadCache","=== Read caching disabled ==="); return; } gEnv->SetValue("TFile.AsyncPrefetching",(Int_t)fAsyncReading); // if (fAsyncReading) gEnv->SetValue("Cache.Directory",Form("file://%s/cache", gSystem->WorkingDirectory())); // if (fAsyncReading) gEnv->SetValue("TFile.AsyncReading",1); fTree->SetCacheSize(fCacheSize); TTreeCache::SetLearnEntries(1); //<<< we can take the decision after 1 entry if (!fAutoBranchHandling && !fRequestedBranches.IsNull()) { TObjArray *arr = fRequestedBranches.Tokenize(","); TIter next(arr); TObject *obj; while ((obj=next())) fTree->AddBranchToCache(obj->GetName(),kTRUE); //<<< add requested branches to cache delete arr; } else { fTree->AddBranchToCache("*", kTRUE); //<<< add all branches to cache } if (fDebug) { Info("CreateReadCache","Read cache enabled %lld bytes with async reading=%d",fCacheSize, (Int_t)fAsyncReading); } return; } //______________________________________________________________________________ Bool_t AliAnalysisManager::EventLoop(Long64_t nevents) { // Initialize an event loop where the data producer is the input handler // The handler must implement MakeTree creating the tree of events (likely // memory resident) and generate the current event in the method BeginEvent. // If the tree is memory resident, the handler should never call TTree::Fill // method. cout << "===== RUNNING IN EVENT LOOP MODE: " << GetName() << endl; if (!fInputEventHandler) { Error("EventLoop", "No input handler: exiting"); return kFALSE; } TTree *tree = new TTree("DummyTree", "Dummy tree for AliAnalysisManager::EventLoop"); SetExternalLoop(kTRUE); if (!Init(tree)) return kFALSE; SlaveBegin(tree); for (Long64_t iev=0; iev<nevents; iev++) ExecAnalysis(); TList dummyList; PackOutput(&dummyList); fIsRemote = kTRUE; Terminate(); return kTRUE; } //______________________________________________________________________________ Int_t AliAnalysisManager::GetEntry(Long64_t entry, Int_t getall) { // Read one entry of the tree or a whole branch. fCurrentEntry = entry; if (!fAutoBranchHandling) return 123456789; if (!fTree || !fTree->GetTree()) return -1; fIOTimer->Start(kTRUE); Long64_t readbytes = fTree->GetTree()->GetEntry(entry, getall); fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); return (Int_t)readbytes; } //______________________________________________________________________________ Int_t AliAnalysisManager::GetRunFromAlienPath(const char *path) { // Attempt to extract run number from input data path. Works only for paths to // alice data in alien. // sim: /alice/sim/<production>/run_no/... // data: /alice/data/year/period/000run_no/... (ESD or AOD) TString type = "unknown"; TString s(path); if (s.Contains("/alice/data")) type = "real"; else if (s.Contains("/alice/sim")) type = "simulated"; TString srun; Int_t ind1, ind2; ind1 = s.Index("/00"); if (ind1>0) { ind2 = s.Index("/",ind1+1); if (ind2-ind1>8) srun = s(ind1+1, ind2-ind1-1); } if (srun.IsNull()) { ind1 = s.Index("/LHC"); if (ind1>0) { ind1 = s.Index("/",ind1+1); if (ind1>0) { ind2 = s.Index("/",ind1+1); if (ind2>0) srun = s(ind1+1, ind2-ind1-1); } } } Int_t run = srun.Atoi(); if (run>0) printf("=== GetRunFromAlienPath: run %d of %s data ===\n", run, type.Data()); return run; } //______________________________________________________________________________ Bool_t AliAnalysisManager::Init(TTree *tree) { // The Init() function is called when the selector needs to initialize // a new tree or chain. Typically here the branch addresses of the tree // will be set. It is normaly not necessary to make changes to the // generated code, but the routine can be extended by the user if needed. // Init() will be called many times when running with PROOF. Bool_t init = kFALSE; if (!tree) return kFALSE; // Should not happen - protected in selector caller if (fDebug > 1) { printf("->AliAnalysisManager::Init(%s)\n", tree->GetName()); } // Call InitTree of EventHandler if (fOutputEventHandler) { if (fMode == kProofAnalysis) { init = fOutputEventHandler->Init(0x0, "proof"); } else { init = fOutputEventHandler->Init(0x0, "local"); } if (!init) { Error("Init", "Output event handler failed to initialize"); return kFALSE; } } if (fInputEventHandler) { if (fMode == kProofAnalysis) { init = fInputEventHandler->Init(tree, "proof"); } else { init = fInputEventHandler->Init(tree, "local"); } if (!init) { Error("Init", "Input event handler failed to initialize tree"); return kFALSE; } } else { // If no input event handler we need to get the tree once // for the chain if(!tree->GetTree()) { Long64_t readEntry = tree->LoadTree(0); if (readEntry == -2) { Error("Init", "Input tree has no entry. Exiting"); return kFALSE; } } } if (fMCtruthEventHandler) { if (fMode == kProofAnalysis) { init = fMCtruthEventHandler->Init(0x0, "proof"); } else { init = fMCtruthEventHandler->Init(0x0, "local"); } if (!init) { Error("Init", "MC event handler failed to initialize"); return kFALSE; } } if (!fInitOK) InitAnalysis(); if (!fInitOK) return kFALSE; fTree = tree; if (fMode != kProofAnalysis) CreateReadCache(); else { // cholm - here we should re-add to the table or branches fTable.Clear(); } AliAnalysisDataContainer *top = fCommonInput; if (!top) top = (AliAnalysisDataContainer*)fInputs->At(0); if (!top) { Error("Init","No top input container !"); return kFALSE; } top->SetData(tree); CheckBranches(kFALSE); fTable.Rehash(100); if (fDebug > 1) { printf("<-AliAnalysisManager::Init(%s)\n", tree->GetName()); } return kTRUE; } //______________________________________________________________________________ void AliAnalysisManager::SlaveBegin(TTree *tree) { // The SlaveBegin() function is called after the Begin() function. // When running with PROOF SlaveBegin() is called on each slave server. // The tree argument is deprecated (on PROOF 0 is passed). if (fDebug > 1) printf("->AliAnalysisManager::SlaveBegin()\n"); // Init timer should be already started // Apply debug options ApplyDebugOptions(); if (fCacheSize && fMCtruthEventHandler && (fMode != kProofAnalysis)) fMCtruthEventHandler->SetCacheSize(fCacheSize); if (!CheckTasks()) Fatal("SlaveBegin", "Not all needed libraries were loaded"); static Bool_t isCalled = kFALSE; Bool_t init = kFALSE; Bool_t initOK = kTRUE; TString msg; TDirectory *curdir = gDirectory; // Call SlaveBegin only once in case of mixing if (isCalled && fMode==kMixingAnalysis) return; gROOT->cd(); // Call Init of EventHandler if (fOutputEventHandler) { if (fMode == kProofAnalysis) { // Merging AOD's in PROOF via TProofOutputFile if (fDebug > 1) printf(" Initializing AOD output file %s...\n", fOutputEventHandler->GetOutputFileName()); init = fOutputEventHandler->Init("proof"); if (!init) msg = "Failed to initialize output handler on worker"; } else { init = fOutputEventHandler->Init("local"); if (!init) msg = "Failed to initialize output handler"; } initOK &= init; if (!fSelector) Error("SlaveBegin", "Selector not set"); else if (!init) {fSelector->Abort(msg); fSelector->SetStatus(-1);} } gROOT->cd(); if (fInputEventHandler) { fInputEventHandler->SetInputTree(tree); if (fMode == kProofAnalysis) { init = fInputEventHandler->Init("proof"); if (!init) msg = "Failed to initialize input handler on worker"; } else { init = fInputEventHandler->Init("local"); if (!init) msg = "Failed to initialize input handler"; } initOK &= init; if (!fSelector) Error("SlaveBegin", "Selector not set"); else if (!init) {fSelector->Abort(msg); fSelector->SetStatus(-1);} } gROOT->cd(); if (fMCtruthEventHandler) { if (fMode == kProofAnalysis) { init = fMCtruthEventHandler->Init("proof"); if (!init) msg = "Failed to initialize MC handler on worker"; } else { init = fMCtruthEventHandler->Init("local"); if (!init) msg = "Failed to initialize MC handler"; } initOK &= init; if (!fSelector) Error("SlaveBegin", "Selector not set"); else if (!init) {fSelector->Abort(msg); fSelector->SetStatus(-1);} } if (curdir) curdir->cd(); isCalled = kTRUE; if (!initOK) return; TIter next(fTasks); AliAnalysisTask *task; // Call CreateOutputObjects for all tasks Bool_t getsysInfo = ((fNSysInfo>0) && (fMode==kLocalAnalysis))?kTRUE:kFALSE; if (getsysInfo) AliSysInfo::SetVerbose(kTRUE); Bool_t dirStatus = TH1::AddDirectoryStatus(); Int_t itask = 0; while ((task=(AliAnalysisTask*)next())) { gROOT->cd(); // Start with memory as current dir and make sure by default histograms do not get attached to files. TH1::AddDirectory(kFALSE); TString pictname = Form("%s_%s", task->GetName(), task->ClassName()); UInt_t taskvmem = task->GetUniqueID(); if (taskvmem==0) { Warning("SlaveBegin","Setting vmem limit to 1024 MB for %s",pictname.Data()); taskvmem = 1024*1024; } else { Info("SlaveBegin","User set vmem limit to %u KB for %s",taskvmem, pictname.Data()); } try { ProcInfo_t pinfo; gSystem->GetProcInfo(&pinfo); Long_t vmem = pinfo.fMemVirtual + pinfo.fMemResident; task->CreateOutputObjects(); // C.L. gSystem->GetProcInfo(&pinfo); vmem -= pinfo.fMemVirtual + pinfo.fMemResident; task->SetUniqueID(taskvmem+vmem); if (task->GetUniqueID()>2147483647) { Error("SlaveBegin", "Task %s takes more vmem %ld KB than requested %u KB, task disabled", pictname.Data(), -vmem, taskvmem); } } catch(std::exception const& e) { Error("SlaveBegin", "Caught exception %s in %s, task disabled", e.what(), pictname.Data()); task->SetUniqueID(-1); } catch(...) { Error("SlaveBegin", "Caught exception in %s, task disabled", pictname.Data()); task->SetUniqueID(-1); } //todo Int_t ns = task->GetNoutputs(); for (Int_t islot=0; islot<ns; ++islot) { AliAnalysisDataContainer *cont = task->GetOutputSlot(islot)->GetContainer(); if (!cont) continue; TSeqCollection *col = dynamic_cast<TSeqCollection*>(cont->GetData()); if (col) { continue; Int_t nents = col->GetEntries(); for (Int_t coli = 0; coli<nents; ++coli) { TTree *utree = dynamic_cast<TTree*>(col->At(coli)); if (utree) { TDirectory *dir = utree->GetDirectory(); if (!dir || dir == gROOT) { ::Error("SlaveBegin","Problem: found memory resident tree %s for task %s, disabling task", utree->GetName(), pictname.Data()); task->SetUniqueID(-1); } else { ::Info("SlaveBegin","Setting auto flush for %s for task %s",utree->GetName(),pictname.Data()); utree->SetAutoSave(0); utree->SetAutoFlush(-2*1024*1024); } } } continue; } TTree *utree = dynamic_cast<TTree*>(cont->GetData()); if (utree) { TDirectory *dir = utree->GetDirectory(); if (!dir || dir == gROOT) { ::Error("SlaveBegin","Problem: found memory resident tree %s for task %s, disabling task", utree->GetName(), pictname.Data()); task->SetUniqueID(-1); } else { ::Info("SlaveBegin","Setting auto flush for %s for task %s",utree->GetName(),pictname.Data()); utree->SetAutoSave(0); utree->SetAutoFlush(-2*1024*1024); } continue; } } if (!task->CheckPostData()) { Error("SlaveBegin","####### IMPORTANT! ####### \n\n\n\ Task %s (%s) did not call PostData() for all its outputs in (User)CreateOutputObjects()\n\n\ ####### FIX YOUR CODE, THIS WILL PRODUCE A FATAL ERROR IN FUTURE! ##########", task->GetName(), task->ClassName()); } if (getsysInfo) AliSysInfo::AddStamp(Form("%s_CREATEOUTOBJ",task->ClassName()), 0, itask, 0); itask++; } TH1::AddDirectory(dirStatus); if (curdir) curdir->cd(); fInitTimer->Stop(); fInitTime += fInitTimer->RealTime(); fInitTimer->Continue(); printf("Initialization time: %g [sec]\n", fInitTime); if (fDebug > 1) printf("<-AliAnalysisManager::SlaveBegin()\n"); } //______________________________________________________________________________ Bool_t AliAnalysisManager::Notify() { // The Notify() function is called when a new file is opened. This // can be either for a new TTree in a TChain or when when a new TTree // is started when using PROOF. It is normaly not necessary to make changes // to the generated code, but the routine can be extended by the // user if needed. The return value is currently not used. fIOTimer->Start(kTRUE); if (!fTree) return kFALSE; if (!TObject::TestBit(AliAnalysisManager::kTrueNotify)) return kFALSE; fTable.Clear("nodelete"); // clearing the hash table may not be needed -> C.L. if (fMode == kProofAnalysis) fIsRemote = kTRUE; TFile *curfile = fTree->GetCurrentFile(); if (!curfile) { Error("Notify","No current file"); return kFALSE; } if (IsCollectThroughput()) { if (fCurrentDescriptor) fCurrentDescriptor->Done(); fCurrentDescriptor = new AliAnalysisFileDescriptor(curfile); fFileDescriptors->Add(fCurrentDescriptor); } if (fDebug > 1) printf("->AliAnalysisManager::Notify() file: %s\n", curfile->GetName()); Int_t run = AliAnalysisManager::GetRunFromAlienPath(curfile->GetName()); if (run && (run != fRunFromPath)) { fRunFromPath = run; if (fDebug > 1) printf(" ### run found from path: %d\n", run); } TIter next(fTasks); AliAnalysisTask *task; // Call Notify of the event handlers if (fInputEventHandler) { fInputEventHandler->Notify(curfile->GetName()); } if (fOutputEventHandler) { fOutputEventHandler->Notify(curfile->GetName()); } if (fMCtruthEventHandler) { fMCtruthEventHandler->Notify(curfile->GetName()); } // Call Notify for all tasks while ((task=(AliAnalysisTask*)next())) task->Notify(); if (fDebug > 1) printf("<-AliAnalysisManager::Notify()\n"); fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); return kTRUE; } //______________________________________________________________________________ Bool_t AliAnalysisManager::Process(Long64_t) { // The Process() function is called for each entry in the tree (or possibly // keyed object in the case of PROOF) to be processed. The entry argument // specifies which entry in the currently loaded tree is to be processed. // It can be passed to either TTree::GetEntry() or TBranch::GetEntry() // to read either all or the required parts of the data. When processing // keyed objects with PROOF, the object is already loaded and is available // via the fObject pointer. // // This function should contain the "body" of the analysis. It can contain // simple or elaborate selection criteria, run algorithms on the data // of the event and typically fill histograms. // WARNING when a selector is used with a TChain, you must use // the pointer to the current TTree to call GetEntry(entry). // The entry is always the local entry number in the current tree. // Assuming that fChain is the pointer to the TChain being processed, // use fChain->GetTree()->GetEntry(entry). // This method is obsolete. ExecAnalysis is called instead. return kTRUE; } //______________________________________________________________________________ void AliAnalysisManager::PackOutput(TList *target) { // Pack all output data containers in the output list. Called at SlaveTerminate // stage in PROOF case for each slave. if (fDebug > 1) printf("->AliAnalysisManager::PackOutput()\n"); fIOTimer->Start(kTRUE); std::ofstream out; if (IsCollectThroughput()) { if (fCurrentDescriptor) fCurrentDescriptor->Done(); fFileDescriptors->Print(); if (fFileInfoLog.IsNull()) fFileInfoLog = "fileinfo.log"; out.open(fFileInfoLog, std::ios::app); if (out.bad()) Error("SavePrimitive", "Bad file name: %s", fFileInfoLog.Data()); else { TIter nextflog(fFileDescriptors); TObject *log; while ((log=nextflog())) log->SavePrimitive(out,""); } } if (!target) { Error("PackOutput", "No target. Exiting."); return; } TDirectory *cdir = gDirectory; gROOT->cd(); if (fInputEventHandler) fInputEventHandler ->Terminate(); if (fOutputEventHandler) fOutputEventHandler ->Terminate(); if (fMCtruthEventHandler) fMCtruthEventHandler->Terminate(); gROOT->cd(); // Call FinishTaskOutput() for each event loop task (not called for // post-event loop tasks - use Terminate() fo those) TIter nexttask(fTasks); AliAnalysisTask *task; while ((task=(AliAnalysisTask*)nexttask())) { if (!task->IsPostEventLoop()) { if (fDebug > 1) printf("->FinishTaskOutput: task %s\n", task->GetName()); task->FinishTaskOutput(); gROOT->cd(); if (fDebug > 1) printf("<-FinishTaskOutput: task %s\n", task->GetName()); } } // Write statistics message on the workers. if (fStatistics) WriteStatisticsMsg(fNcalls); if (fMode == kProofAnalysis) { TIter next(fOutputs); AliAnalysisDataContainer *output; Bool_t isManagedByHandler = kFALSE; TList filestmp; filestmp.SetOwner(); while ((output=(AliAnalysisDataContainer*)next())) { // Do not consider outputs of post event loop tasks isManagedByHandler = kFALSE; if (output->GetProducer() && output->GetProducer()->IsPostEventLoop()) continue; const char *filename = output->GetFileName(); if (!(strcmp(filename, "default")) && fOutputEventHandler) { isManagedByHandler = kTRUE; printf("#### Handler output. Extra: %s\n", fExtraFiles.Data()); filename = fOutputEventHandler->GetOutputFileName(); } // Check if data was posted to this container. If not, issue an error. if (!output->GetData() && !isManagedByHandler) { Error("PackOutput", "No data for output container %s. Forgot to PostData ?", output->GetName()); continue; } if (!output->IsSpecialOutput()) { // Normal outputs if (strlen(filename) && !isManagedByHandler) { // Backup current folder TDirectory *opwd = gDirectory; // File resident outputs. // Check first if the file exists. TString openoption = "RECREATE"; Bool_t firsttime = kTRUE; if (filestmp.FindObject(output->GetFileName())) { firsttime = kFALSE; } else { filestmp.Add(new TNamed(output->GetFileName(),"")); } if (!gSystem->AccessPathName(output->GetFileName()) && !firsttime) openoption = "UPDATE"; // TFile *file = AliAnalysisManager::OpenFile(output, openoption, kTRUE); // Save data to file, then close. if (output->GetData()->InheritsFrom(TCollection::Class())) { // If data is a collection, we set the name of the collection // as the one of the container and we save as a single key. TCollection *coll = (TCollection*)output->GetData(); coll->SetName(output->GetName()); // coll->Write(output->GetName(), TObject::kSingleKey); } else { if (output->GetData()->InheritsFrom(TTree::Class())) { TFile *file = AliAnalysisManager::OpenFile(output, openoption, kTRUE); // Save data to file, then close. TTree *tree = (TTree*)output->GetData(); // Check if tree is in memory if (tree->GetDirectory()==gROOT) tree->SetDirectory(gDirectory); tree->AutoSave(); file->Close(); } else { // output->GetData()->Write(); } } if (fDebug > 1) printf("PackOutput %s: memory merge, file resident output\n", output->GetName()); // if (fDebug > 2) { // printf(" file %s listing content:\n", filename); // file->ls(); // } // Clear file list to release object ownership to user. // file->Clear(); // file->Close(); output->SetFile(NULL); // Restore current directory if (opwd) opwd->cd(); } else { // Memory-resident outputs if (fDebug > 1) printf("PackOutput %s: memory merge memory resident output\n", filename); } AliAnalysisDataWrapper *wrap = 0; if (isManagedByHandler) { wrap = new AliAnalysisDataWrapper(fOutputEventHandler->GetTree()); wrap->SetName(output->GetName()); } else wrap =output->ExportData(); // Output wrappers must NOT delete data after merging - the user owns them wrap->SetDeleteData(kFALSE); target->Add(wrap); } else { // Special outputs. The file must be opened and connected to the container. TDirectory *opwd = gDirectory; TFile *file = output->GetFile(); if (!file) { AliAnalysisTask *producer = output->GetProducer(); Fatal("PackOutput", "File %s for special container %s was NOT opened in %s::CreateOutputObjects !!!", output->GetFileName(), output->GetName(), producer->ClassName()); continue; } TString outFilename = file->GetName(); if (fDebug > 1) printf("PackOutput %s: special output\n", output->GetName()); if (isManagedByHandler) { // Terminate IO for files managed by the output handler // file->Write() moved to AOD handler (A.G. 11.01.10) // if (file) file->Write(); if (file && fDebug > 2) { printf(" handled file %s listing content:\n", file->GetName()); file->ls(); } fOutputEventHandler->TerminateIO(); } else { file->cd(); // Release object ownership to users after writing data to file if (output->GetData()->InheritsFrom(TCollection::Class())) { // If data is a collection, we set the name of the collection // as the one of the container and we save as a single key. TCollection *coll = (TCollection*)output->GetData(); coll->SetName(output->GetName()); coll->Write(output->GetName(), TObject::kSingleKey); } else { if (output->GetData()->InheritsFrom(TTree::Class())) { TTree *tree = (TTree*)output->GetData(); tree->SetDirectory(file); tree->AutoSave(); } else { output->GetData()->Write(); } } if (fDebug > 2) { printf(" file %s listing content:\n", output->GetFileName()); file->ls(); } // Clear file list to release object ownership to user. // file->Clear(); file->Close(); output->SetFile(NULL); } // Restore current directory if (opwd) opwd->cd(); // Check if a special output location was provided or the output files have to be merged if (strlen(fSpecialOutputLocation.Data())) { TString remote = fSpecialOutputLocation; remote += "/"; Int_t gid = gROOT->ProcessLine("gProofServ->GetGroupId();"); if (remote.BeginsWith("alien:")) { gROOT->ProcessLine("TGrid::Connect(\"alien:\", gProofServ->GetUser());"); remote += outFilename; remote.ReplaceAll(".root", Form("_%d.root", gid)); } else { remote += Form("%s_%d_", gSystem->HostName(), gid); remote += outFilename; } if (fDebug > 1) Info("PackOutput", "Output file for container %s to be copied \n at: %s. No merging.", output->GetName(), remote.Data()); TFile::Cp ( outFilename.Data(), remote.Data() ); // Copy extra outputs if (fExtraFiles.Length() && isManagedByHandler) { TObjArray *arr = fExtraFiles.Tokenize(" "); TObjString *os; TIter nextfilename(arr); while ((os=(TObjString*)nextfilename())) { outFilename = os->GetString(); remote = fSpecialOutputLocation; remote += "/"; if (remote.BeginsWith("alien://")) { remote += outFilename; remote.ReplaceAll(".root", Form("_%d.root", gid)); } else { remote += Form("%s_%d_", gSystem->HostName(), gid); remote += outFilename; } if (fDebug > 1) Info("PackOutput", "Extra AOD file %s to be copied \n at: %s. No merging.", outFilename.Data(), remote.Data()); TFile::Cp ( outFilename.Data(), remote.Data() ); } delete arr; } } else { // No special location specified-> use TProofOutputFile as merging utility // The file at this output slot must be opened in CreateOutputObjects if (fDebug > 1) printf(" File for container %s to be merged via file merger...\n", output->GetName()); } } } } fIOTime += fIOTimer->RealTime(); if ((fDebug || IsCollectThroughput())) { fInitTimer->Stop(); fInitTime = fInitTimer->RealTime()-fIOTime-fCPUTime; printf("=Analysis %s= init time: %g[sec]\ \n I/O & data mng.: %g [sec]\ \n task execution: %g [sec]\ \n total time: CPU=%g [sec] REAL=%g[sec]\n", GetName(), fInitTime, fIOTime, fCPUTime, fInitTimer->CpuTime(), fInitTimer->RealTime()); if (IsCollectThroughput()) { out << "#summary#########################################################" << endl; out << "train_name " << GetName() << endl; out << "root_time " << fInitTimer->RealTime() << endl; out << "root_cpu " << fInitTimer->CpuTime() << endl; out << "init_time " << fInitTime << endl; out << "io_mng_time " << fIOTime << endl; out << "exec_time " << fCPUTime << endl; TString aliensite = gSystem->Getenv("ALIEN_SITE"); out << "alien_site " << aliensite << endl; out << "host_name "; TString hostname = gSystem->Getenv("ALIEN_HOSTNAME"); if (hostname.IsNull()) { out.close(); gSystem->Exec(Form("hostname -f >> %s", fFileInfoLog.Data())); } else { out << hostname << endl; } } } if (cdir) cdir->cd(); if (fDebug > 1) printf("<-AliAnalysisManager::PackOutput: output list contains %d containers\n", target->GetSize()); } //______________________________________________________________________________ void AliAnalysisManager::ImportWrappers(TList *source) { // Import data in output containers from wrappers coming in source. if (fDebug > 1) printf("->AliAnalysisManager::ImportWrappers()\n"); fIOTimer->Start(kTRUE); TIter next(fOutputs); AliAnalysisDataContainer *cont; AliAnalysisDataWrapper *wrap; Int_t icont = 0; Bool_t inGrid = (fMode == kGridAnalysis)?kTRUE:kFALSE; TDirectory *cdir = gDirectory; while ((cont=(AliAnalysisDataContainer*)next())) { wrap = 0; if (cont->GetProducer() && cont->GetProducer()->IsPostEventLoop() && !inGrid) continue; if (cont->IsRegisterDataset()) continue; const char *filename = cont->GetFileName(); Bool_t isManagedByHandler = kFALSE; if (!(strcmp(filename, "default")) && fOutputEventHandler) { isManagedByHandler = kTRUE; filename = fOutputEventHandler->GetOutputFileName(); } if (cont->IsSpecialOutput() || inGrid) { if (strlen(fSpecialOutputLocation.Data())) continue; // Copy merged file from PROOF scratch space. // In case of grid the files are already in the current directory. if (!inGrid) { if (isManagedByHandler && fExtraFiles.Length()) { // Copy extra registered dAOD files. TObjArray *arr = fExtraFiles.Tokenize(" "); TObjString *os; TIter nextfilename(arr); while ((os=(TObjString*)nextfilename())) GetFileFromWrapper(os->GetString(), source); delete arr; } if (!GetFileFromWrapper(filename, source)) continue; } // Normally we should connect data from the copied file to the // corresponding output container, but it is not obvious how to do this // automatically if several objects in file... TFile *f = (TFile*)gROOT->GetListOfFiles()->FindObject(filename); if (!f) f = TFile::Open(filename, "READ"); if (!f) { Error("ImportWrappers", "Cannot open file %s in read-only mode", filename); continue; } f->cd(); TObject *obj = 0; // Cd to the directory pointed by the container TString folder = cont->GetFolderName(); if (!folder.IsNull()) f->cd(folder); // Try to fetch first an object having the container name. obj = gDirectory->Get(cont->GetName()); if (!obj) { Warning("ImportWrappers", "Could not import object of type:%s for container %s in file %s:%s.\n Object will not be available in Terminate(). Try if possible to name the output object as the container (%s) or to embed it in a TList", cont->GetType()->GetName(), cont->GetName(), filename, cont->GetFolderName(), cont->GetName()); continue; } wrap = new AliAnalysisDataWrapper(obj); wrap->SetDeleteData(kFALSE); } if (!wrap) wrap = (AliAnalysisDataWrapper*)source->FindObject(cont->GetName()); if (!wrap) { Error("ImportWrappers","Container %s not found in analysis output !", cont->GetName()); continue; } icont++; if (fDebug > 1) { printf(" Importing data for container %s\n", cont->GetName()); if (strlen(filename)) printf(" -> file %s\n", filename); else printf("\n"); } cont->ImportData(wrap); } if (cdir) cdir->cd(); fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); if (fDebug > 1) printf("<-AliAnalysisManager::ImportWrappers(): %d containers imported\n", icont); } //______________________________________________________________________________ void AliAnalysisManager::UnpackOutput(TList *source) { // Called by AliAnalysisSelector::Terminate only on the client. fIOTimer->Start(kTRUE); if (fDebug > 1) printf("->AliAnalysisManager::UnpackOutput()\n"); if (!source) { Error("UnpackOutput", "No target. Exiting."); return; } if (fDebug > 1) printf(" Source list contains %d containers\n", source->GetSize()); if (fMode == kProofAnalysis) ImportWrappers(source); TIter next(fOutputs); AliAnalysisDataContainer *output; while ((output=(AliAnalysisDataContainer*)next())) { if (!output->GetData()) continue; // Check if there are client tasks that run post event loop if (output->HasConsumers()) { // Disable event loop semaphore output->SetPostEventLoop(kTRUE); TObjArray *list = output->GetConsumers(); Int_t ncons = list->GetEntriesFast(); for (Int_t i=0; i<ncons; i++) { AliAnalysisTask *task = (AliAnalysisTask*)list->At(i); task->CheckNotify(kTRUE); // If task is active, execute it if (task->IsPostEventLoop() && task->IsActive()) { if (fDebug > 1) printf("== Executing post event loop task %s\n", task->GetName()); if (fStatistics) fStatistics->StartTimer(GetTaskIndex(task), task->GetName(), task->ClassName()); task->ExecuteTask(); } } if (fStatistics) fStatistics->StopTimer(); } } fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); if (fDebug > 1) printf("<-AliAnalysisManager::UnpackOutput()\n"); } //______________________________________________________________________________ void AliAnalysisManager::Terminate() { // The Terminate() function is the last function to be called during // a query. It always runs on the client, it can be used to present // the results graphically. if (fDebug > 1) printf("->AliAnalysisManager::Terminate()\n"); fInitTimer->Start(kTRUE); TDirectory *cdir = gDirectory; gROOT->cd(); AliAnalysisTask *task; AliAnalysisDataContainer *output; TIter next(fTasks); TStopwatch timer; Bool_t getsysInfo = ((fNSysInfo>0) && (fMode==kLocalAnalysis))?kTRUE:kFALSE; if (getsysInfo) AliSysInfo::SetVerbose(kTRUE); // Call Terminate() for tasks Int_t itask = 0; while (!IsSkipTerminate() && (task=(AliAnalysisTask*)next())) { // Save all the canvases produced by the Terminate TString pictname = Form("%s_%s", task->GetName(), task->ClassName()); UInt_t taskvmem = task->GetUniqueID(); if (taskvmem<2147483648) { try { ProcInfo_t pinfo; gSystem->GetProcInfo(&pinfo); Long_t vmem = pinfo.fMemVirtual + pinfo.fMemResident; task->Terminate(); // C.L. vmem -= pinfo.fMemVirtual + pinfo.fMemResident; task->SetUniqueID(taskvmem+vmem); if (task->GetUniqueID()>2147483647) { Error("Terminate", "Task %s takes more vmem %ld KB than still available %u KB, task disabled", pictname.Data(), -vmem, taskvmem); } } catch(std::exception const& e) { Error("Terminate", "Caught exception %s in %s, task disabled", e.what(), pictname.Data()); task->SetUniqueID(-1); } catch(...) { Error("Terminate", "Caught exception in %s, task disabled", pictname.Data()); task->SetUniqueID(-1); } } gROOT->cd(); if (getsysInfo) AliSysInfo::AddStamp(Form("%s_TERMINATE",task->ClassName()),0, itask, 2); itask++; if (TObject::TestBit(kSaveCanvases)) { if (!gROOT->IsBatch()) { if (fDebug>1) printf("Waiting 5 sec for %s::Terminate() to finish drawing ...\n", task->ClassName()); timer.Start(kTRUE); while (timer.RealTime()<5) { timer.Continue(); gSystem->ProcessEvents(); } } Int_t iend = gROOT->GetListOfCanvases()->GetEntries(); if (iend==0) continue; TCanvas *canvas; for (Int_t ipict=0; ipict<iend; ipict++) { canvas = (TCanvas*)gROOT->GetListOfCanvases()->At(ipict); if (!canvas) continue; canvas->SaveAs(Form("%s_%02d.gif", pictname.Data(),ipict)); } gROOT->GetListOfCanvases()->Delete(); } } // if (fInputEventHandler) fInputEventHandler ->TerminateIO(); if (fOutputEventHandler) fOutputEventHandler ->TerminateIO(); if (fMCtruthEventHandler) fMCtruthEventHandler->TerminateIO(); gROOT->cd(); TObjArray *allOutputs = new TObjArray(); Int_t icont; for (icont=0; icont<fOutputs->GetEntriesFast(); icont++) allOutputs->Add(fOutputs->At(icont)); if (!IsSkipTerminate()) for (icont=0; icont<fParamCont->GetEntriesFast(); icont++) allOutputs->Add(fParamCont->At(icont)); TIter next1(allOutputs); TString handlerFile = ""; TString extraOutputs = ""; if (fOutputEventHandler) { handlerFile = fOutputEventHandler->GetOutputFileName(); extraOutputs = fOutputEventHandler->GetExtraOutputs(); } icont = 0; TList filestmp; while ((output=(AliAnalysisDataContainer*)next1())) { // Special outputs or grid files have the files already closed and written. icont++; if (fMode == kGridAnalysis && icont<=fOutputs->GetEntriesFast()) continue; if (fMode == kProofAnalysis) { if (output->IsSpecialOutput() || output->IsRegisterDataset()) continue; } const char *filename = output->GetFileName(); TString openoption = "RECREATE"; if (!(strcmp(filename, "default"))) continue; if (!strlen(filename)) continue; if (!output->GetData()) continue; TDirectory *opwd = gDirectory; TFile *file = output->GetFile(); if (!file) file = (TFile*)gROOT->GetListOfFiles()->FindObject(filename); if (!file) { //if (handlerFile == filename && !gSystem->AccessPathName(filename)) openoption = "UPDATE"; Bool_t firsttime = kTRUE; if (filestmp.FindObject(filename) || extraOutputs.Contains(filename)) { firsttime = kFALSE; } else { filestmp.Add(new TNamed(filename,"")); } if (!gSystem->AccessPathName(filename) && !firsttime) openoption = "UPDATE"; if (fDebug>1) printf("Opening file: %s option=%s\n",filename, openoption.Data()); file = new TFile(filename, openoption); } else { if (fDebug>1) printf("File <%s> already opened with option: <%s> \n", filename, file->GetOption()); openoption = file->GetOption(); if (openoption == "READ") { if (fDebug>1) printf("...reopening in UPDATE mode\n"); file->ReOpen("UPDATE"); } } if (file->IsZombie()) { Error("Terminate", "Cannot open output file %s", filename); continue; } output->SetFile(file); file->cd(); // Check for a folder request TString dir = output->GetFolderName(); if (!dir.IsNull()) { if (!file->GetDirectory(dir)) file->mkdir(dir); file->cd(dir); } if (fDebug > 1) printf("...writing container %s to file %s:%s\n", output->GetName(), file->GetName(), output->GetFolderName()); if (output->GetData()->InheritsFrom(TCollection::Class())) { // If data is a collection, we set the name of the collection // as the one of the container and we save as a single key. TCollection *coll = (TCollection*)output->GetData(); coll->SetName(output->GetName()); coll->Write(output->GetName(), TObject::kSingleKey); } else { if (output->GetData()->InheritsFrom(TTree::Class())) { TTree *tree = (TTree*)output->GetData(); tree->SetDirectory(gDirectory); tree->AutoSave(); } else { output->GetData()->Write(); } } if (opwd) opwd->cd(); } gROOT->cd(); next1.Reset(); TString copiedFiles; while ((output=(AliAnalysisDataContainer*)next1())) { // Close all files at output TDirectory *opwd = gDirectory; if (output->GetFile()) { // Clear file list to release object ownership to user. // output->GetFile()->Clear(); output->GetFile()->Close(); // Copy merged outputs in alien if requested if (fSpecialOutputLocation.BeginsWith("alien://")) { if (copiedFiles.Contains(output->GetFile()->GetName())) { if (opwd) opwd->cd(); output->SetFile(NULL); continue; } Info("Terminate", "Copy file %s to %s", output->GetFile()->GetName(),fSpecialOutputLocation.Data()); gROOT->ProcessLine("if (!gGrid) TGrid::Connect(\"alien:\");"); TFile::Cp(output->GetFile()->GetName(), Form("%s/%s", fSpecialOutputLocation.Data(), output->GetFile()->GetName())); copiedFiles += output->GetFile()->GetName(); } output->SetFile(NULL); } if (opwd) opwd->cd(); } delete allOutputs; //Write statistics information on the client if (fStatistics) WriteStatisticsMsg(fNcalls); if (getsysInfo) { TDirectory *crtdir = gDirectory; TFile f("syswatch.root", "RECREATE"); TH1 *hist; TString cut; if (!f.IsZombie()) { TTree *tree = AliSysInfo::MakeTree("syswatch.log"); tree->SetName("syswatch"); tree->SetMarkerStyle(kCircle); tree->SetMarkerColor(kBlue); tree->SetMarkerSize(0.5); if (!gROOT->IsBatch()) { tree->SetAlias("event", "id0"); tree->SetAlias("task", "id1"); tree->SetAlias("stage", "id2"); // Already defined aliases // tree->SetAlias("deltaT","stampSec-stampOldSec"); // tree->SetAlias("T","stampSec-first"); // tree->SetAlias("deltaVM","(pI.fMemVirtual-pIOld.fMemVirtual)"); // tree->SetAlias("VM","pI.fMemVirtual"); TCanvas *canvas = new TCanvas("SysInfo","SysInfo",10,10,1200,800); Int_t npads = 1 /*COO plot for all tasks*/ + fTopTasks->GetEntries() /*Exec plot per task*/ + 1 /*Terminate plot for all tasks*/ + 1; /*vm plot*/ Int_t iopt = (Int_t)TMath::Sqrt((Double_t)npads); if (npads<iopt*(iopt+1)) canvas->Divide(iopt, iopt+1, 0.01, 0.01); else canvas->Divide(iopt+1, iopt+1, 0.01, 0.01); Int_t ipad = 1; // draw the plot of deltaVM for Exec for each task for (itask=0; itask<fTopTasks->GetEntriesFast(); itask++) { task = (AliAnalysisTask*)fTopTasks->At(itask); canvas->cd(ipad++); cut = Form("task==%d && stage==1", itask); tree->Draw("deltaVM:event",cut,"", 1234567890, 0); hist = (TH1*)gPad->GetListOfPrimitives()->FindObject("htemp"); if (hist) { hist->SetTitle(Form("%s: Exec dVM[MB]/event", task->GetName())); hist->GetYaxis()->SetTitle("deltaVM [MB]"); } } // Draw the plot of deltaVM for CreateOutputObjects for all tasks canvas->cd(ipad++); tree->SetMarkerStyle(kFullTriangleUp); tree->SetMarkerColor(kRed); tree->SetMarkerSize(0.8); cut = "task>=0 && task<1000 && stage==0"; tree->Draw("deltaVM:sname",cut,"", 1234567890, 0); hist = (TH1*)gPad->GetListOfPrimitives()->FindObject("htemp"); if (hist) { hist->SetTitle("Memory in CreateOutputObjects()"); hist->GetYaxis()->SetTitle("deltaVM [MB]"); hist->GetXaxis()->SetTitle("task"); } // draw the plot of deltaVM for Terminate for all tasks canvas->cd(ipad++); tree->SetMarkerStyle(kOpenSquare); tree->SetMarkerColor(kMagenta); cut = "task>=0 && task<1000 && stage==2"; tree->Draw("deltaVM:sname",cut,"", 1234567890, 0); hist = (TH1*)gPad->GetListOfPrimitives()->FindObject("htemp"); if (hist) { hist->SetTitle("Memory in Terminate()"); hist->GetYaxis()->SetTitle("deltaVM [MB]"); hist->GetXaxis()->SetTitle("task"); } // Full VM profile canvas->cd(ipad++); tree->SetMarkerStyle(kFullCircle); tree->SetMarkerColor(kGreen); cut = Form("task==%d && stage==1",fTopTasks->GetEntriesFast()-1); tree->Draw("VM:event",cut,"", 1234567890, 0); hist = (TH1*)gPad->GetListOfPrimitives()->FindObject("htemp"); if (hist) { hist->SetTitle("Virtual memory"); hist->GetYaxis()->SetTitle("VM [MB]"); } canvas->Modified(); } tree->SetMarkerStyle(kCircle); tree->SetMarkerColor(kBlue); tree->SetMarkerSize(0.5); tree->Write(); f.Close(); delete tree; } if (crtdir) crtdir->cd(); } // Validate the output files if (ValidateOutputFiles() && fIsRemote && fMode!=kProofAnalysis) { ofstream out; out.open("outputs_valid", ios::out); out.close(); } if (cdir) cdir->cd(); fInitTimer->Stop(); if (fDebug || IsCollectThroughput()) { printf("=Analysis %s= Terminate time: %g[sec]\n", GetName(), fInitTimer->RealTime()); } if (fDebug > 1) printf("<-AliAnalysisManager::Terminate()\n"); } //______________________________________________________________________________ void AliAnalysisManager::ProfileTask(Int_t itop, const char *option) const { // Profiles the task having the itop index in the list of top (first level) tasks. AliAnalysisTask *task = (AliAnalysisTask*)fTopTasks->At(itop); if (!task) { Error("ProfileTask", "There are only %d top tasks in the manager", fTopTasks->GetEntries()); return; } ProfileTask(task->GetName(), option); } //______________________________________________________________________________ void AliAnalysisManager::ProfileTask(const char *name, const char */*option*/) const { // Profile a managed task after the execution of the analysis in case NSysInfo // was used. if (gSystem->AccessPathName("syswatch.root")) { Error("ProfileTask", "No file syswatch.root found in the current directory"); return; } if (gROOT->IsBatch()) return; AliAnalysisTask *task = (AliAnalysisTask*)fTopTasks->FindObject(name); if (!task) { Error("ProfileTask", "No top task named %s known by the manager.", name); return; } Int_t itop = fTopTasks->IndexOf(task); Int_t itask = fTasks->IndexOf(task); // Create canvas with 2 pads: first draw COO + Terminate, second Exec TDirectory *cdir = gDirectory; TFile f("syswatch.root"); TTree *tree = (TTree*)f.Get("syswatch"); if (!tree) { Error("ProfileTask", "No tree named <syswatch> found in file syswatch.root"); return; } tree->SetAlias("event", "id0"); tree->SetAlias("task", "id1"); tree->SetAlias("stage", "id2"); if (fDebug > 1) printf("=== Profiling task %s (class %s)\n", name, task->ClassName()); TCanvas *canvas = new TCanvas(Form("profile_%d",itop),Form("Profile of task %s (class %s)",name,task->ClassName()),10,10,800,600); canvas->Divide(2, 2, 0.01, 0.01); Int_t ipad = 1; TString cut; TH1 *hist; // VM profile for COO and Terminate methods canvas->cd(ipad++); cut = Form("task==%d && (stage==0 || stage==2)",itask); tree->Draw("deltaVM:sname",cut,"", 1234567890, 0); hist = (TH1*)gPad->GetListOfPrimitives()->FindObject("htemp"); if (hist) { hist->SetTitle("Alocated VM[MB] for COO and Terminate"); hist->GetYaxis()->SetTitle("deltaVM [MB]"); hist->GetXaxis()->SetTitle("method"); } // CPU profile per event canvas->cd(ipad++); cut = Form("task==%d && stage==1",itop); tree->Draw("deltaT:event",cut,"", 1234567890, 0); hist = (TH1*)gPad->GetListOfPrimitives()->FindObject("htemp"); if (hist) { hist->SetTitle("Execution time per event"); hist->GetYaxis()->SetTitle("CPU/event [s]"); } // VM profile for Exec canvas->cd(ipad++); cut = Form("task==%d && stage==1",itop); tree->Draw("deltaVM:event",cut,"", 1234567890, 0); hist = (TH1*)gPad->GetListOfPrimitives()->FindObject("htemp"); if (hist) { hist->SetTitle("Alocated VM[MB] per event"); hist->GetYaxis()->SetTitle("deltaVM [MB]"); } canvas->Modified(); delete tree; f.Close(); if (cdir) cdir->cd(); } //______________________________________________________________________________ void AliAnalysisManager::AddTask(AliAnalysisTask *task) { // Adds a user task to the global list of tasks. if (fInitOK) { Error("AddTask", "Cannot add task %s since InitAnalysis was already called", task->GetName()); return; } if (fTasks->FindObject(task)) { Warning("AddTask", "Task %s: the same object already added to the analysis manager. Not adding.", task->GetName()); return; } task->SetActive(kFALSE); fTasks->Add(task); } //______________________________________________________________________________ AliAnalysisTask *AliAnalysisManager::GetTask(const char *name) const { // Retreive task by name. if (!fTasks) return NULL; return (AliAnalysisTask*)fTasks->FindObject(name); } //______________________________________________________________________________ Int_t AliAnalysisManager::GetTaskIndex(const AliAnalysisTask *task) const { // Returns task inded in the manager's list, -1 if not registered. if (!fTasks) return -1; return fTasks->IndexOf(task); } //______________________________________________________________________________ AliAnalysisDataContainer *AliAnalysisManager::CreateContainer(const char *name, TClass *datatype, EAliAnalysisContType type, const char *filename) { // Create a data container of a certain type. Types can be: // kExchangeContainer = 0, used to exchange data between tasks // kInputContainer = 1, used to store input data // kOutputContainer = 2, used for writing result to a file // filename: composed by file#folder (e.g. results.root#INCLUSIVE) - will write // the output object to a folder inside the output file if (fContainers->FindObject(name)) { Error("CreateContainer","A container named %s already defined !",name); return NULL; } AliAnalysisDataContainer *cont = new AliAnalysisDataContainer(name, datatype); fContainers->Add(cont); switch (type) { case kInputContainer: fInputs->Add(cont); break; case kOutputContainer: fOutputs->Add(cont); if (filename && strlen(filename)) { cont->SetFileName(filename); cont->SetDataOwned(kFALSE); // data owned by the file } break; case kParamContainer: fParamCont->Add(cont); if (filename && strlen(filename)) { cont->SetFileName(filename); cont->SetDataOwned(kFALSE); // data owned by the file } break; case kExchangeContainer: cont->SetExchange(kTRUE); fExchangeCont->Add(cont); cont->SetDataOwned(kFALSE); // data owned by the publisher break; } return cont; } //______________________________________________________________________________ Bool_t AliAnalysisManager::ConnectInput(AliAnalysisTask *task, Int_t islot, AliAnalysisDataContainer *cont) { // Connect input of an existing task to a data container. if (!task) { Error("ConnectInput", "Task pointer is NULL"); return kFALSE; } if (!fTasks->FindObject(task)) { AddTask(task); Info("ConnectInput", "Task %s was not registered. Now owned by analysis manager", task->GetName()); } Bool_t connected = task->ConnectInput(islot, cont); return connected; } //______________________________________________________________________________ Bool_t AliAnalysisManager::ConnectOutput(AliAnalysisTask *task, Int_t islot, AliAnalysisDataContainer *cont) { // Connect output of an existing task to a data container. if (!task) { Error("ConnectOutput", "Task pointer is NULL"); return kFALSE; } if (!fTasks->FindObject(task)) { AddTask(task); Warning("ConnectOutput", "Task %s not registered. Now owned by analysis manager", task->GetName()); } Bool_t connected = task->ConnectOutput(islot, cont); return connected; } //______________________________________________________________________________ void AliAnalysisManager::CleanContainers() { // Clean data from all containers that have already finished all client tasks. TIter next(fContainers); AliAnalysisDataContainer *cont; while ((cont=(AliAnalysisDataContainer *)next())) { if (cont->IsOwnedData() && cont->IsDataReady() && cont->ClientsExecuted()) cont->DeleteData(); } } //______________________________________________________________________________ Bool_t AliAnalysisManager::InitAnalysis() { // Initialization of analysis chain of tasks. Should be called after all tasks // and data containers are properly connected // Reset flag and remove valid_outputs file if exists if (fInitOK) return kTRUE; if (!gSystem->AccessPathName("outputs_valid")) gSystem->Unlink("outputs_valid"); // Check for top tasks (depending only on input data containers) if (!fTasks->First()) { Error("InitAnalysis", "Analysis has no tasks !"); return kFALSE; } TIter next(fTasks); AliAnalysisTask *task; AliAnalysisDataContainer *cont; Int_t ntop = 0; Int_t nzombies = 0; Bool_t iszombie = kFALSE; Bool_t istop = kTRUE; Int_t i; while ((task=(AliAnalysisTask*)next())) { istop = kTRUE; iszombie = kFALSE; Int_t ninputs = task->GetNinputs(); for (i=0; i<ninputs; i++) { cont = task->GetInputSlot(i)->GetContainer(); if (!cont) { if (!iszombie) { task->SetZombie(); fZombies->Add(task); nzombies++; iszombie = kTRUE; } Error("InitAnalysis", "Input slot %d of task %s has no container connected ! Declared zombie...", i, task->GetName()); } if (iszombie) continue; // Check if cont is an input container if (istop && !fInputs->FindObject(cont)) istop=kFALSE; // Connect to parent task } if (istop) { ntop++; fTopTasks->Add(task); } } if (!ntop) { Error("InitAnalysis", "No top task defined. At least one task should be connected only to input containers"); return kFALSE; } // Check now if there are orphan tasks for (i=0; i<ntop; i++) { task = (AliAnalysisTask*)fTopTasks->At(i); task->SetUsed(); } Int_t norphans = 0; next.Reset(); while ((task=(AliAnalysisTask*)next())) { if (!task->IsUsed()) { norphans++; Warning("InitAnalysis", "Task %s is orphan", task->GetName()); } } // Check the task hierarchy (no parent task should depend on data provided // by a daughter task) for (i=0; i<ntop; i++) { task = (AliAnalysisTask*)fTopTasks->At(i); if (task->CheckCircularDeps()) { Error("InitAnalysis", "Found illegal circular dependencies between following tasks:"); PrintStatus("dep"); return kFALSE; } } // Check that all containers feeding post-event loop tasks are in the outputs list TIter nextcont(fContainers); // loop over all containers while ((cont=(AliAnalysisDataContainer*)nextcont())) { if (!cont->IsPostEventLoop() && !fOutputs->FindObject(cont)) { if (cont->HasConsumers()) { // Check if one of the consumers is post event loop TIter nextconsumer(cont->GetConsumers()); while ((task=(AliAnalysisTask*)nextconsumer())) { if (task->IsPostEventLoop()) { fOutputs->Add(cont); break; } } } } } // Check if all special output containers have a file name provided TIter nextout(fOutputs); while ((cont=(AliAnalysisDataContainer*)nextout())) { if (cont->IsSpecialOutput() && !strlen(cont->GetFileName())) { Error("InitAnalysis", "Wrong container %s : a file name MUST be provided for special outputs", cont->GetName()); return kFALSE; } } // Initialize requested branch list if needed if (!fAutoBranchHandling) { next.Reset(); while ((task=(AliAnalysisTask*)next())) { if (!task->HasBranches()) { Error("InitAnalysis", "Manual branch loading requested but task %s of type %s does not define branches.\nUse: fBranchNames = \"ESD:br1,br2,...,brN AOD:bra1,bra2,...,braM\"", task->GetName(), task->ClassName()); return kFALSE; } if (!fInputEventHandler || !strlen(fInputEventHandler->GetDataType())) { Error("InitAnalysis", "Manual branch loading requested but no input handler defined or handler does not define data type."); return kFALSE; } TString taskbranches; task->GetBranches(fInputEventHandler->GetDataType(), taskbranches); if (taskbranches.IsNull()) { Error("InitAnalysis", "Manual branch loading requested but task %s of type %s does not define branches of type %s:", task->GetName(), task->ClassName(), fInputEventHandler->GetDataType()); return kFALSE; } AddBranches(taskbranches); } } fInitOK = kTRUE; return kTRUE; } //______________________________________________________________________________ void AliAnalysisManager::AddBranches(const char *branches) { // Add branches to the existing fRequestedBranches. TString br(branches); TObjArray *arr = br.Tokenize(","); TIter next(arr); TObject *obj; while ((obj=next())) { if (!fRequestedBranches.Contains(obj->GetName())) { if (!fRequestedBranches.IsNull()) fRequestedBranches += ","; fRequestedBranches += obj->GetName(); } } delete arr; } //______________________________________________________________________________ void AliAnalysisManager::CheckBranches(Bool_t load) { // The method checks the input branches to be loaded during the analysis. if (fAutoBranchHandling || fRequestedBranches.IsNull() || !fTree) return; TObjArray *arr = fRequestedBranches.Tokenize(","); TIter next(arr); TObject *obj; while ((obj=next())) { TBranch *br = dynamic_cast<TBranch*>(fTable.FindObject(obj->GetName())); if (!br) { br = fTree->GetBranch(obj->GetName()); if (!br) { Error("CheckBranches", "Could not find branch %s",obj->GetName()); continue; } fTable.Add(br); } if (load && br->GetReadEntry()!=GetCurrentEntry()) { br->GetEntry(GetCurrentEntry()); } } delete arr; } //______________________________________________________________________________ Bool_t AliAnalysisManager::CheckTasks() const { // Check consistency of tasks. Int_t ntasks = fTasks->GetEntries(); if (!ntasks) { Error("CheckTasks", "No tasks connected to the manager. This may be due to forgetting to compile the task or to load their library."); return kFALSE; } // Get the pointer to AliAnalysisTaskSE::Class() TClass *badptr = (TClass*)gROOT->ProcessLine("AliAnalysisTaskSE::Class()"); // Loop all tasks to check if their corresponding library was loaded TIter next(fTasks); TObject *obj; while ((obj=next())) { if (obj->IsA() == badptr) { Error("CheckTasks", "##################\n \ Class for task %s NOT loaded. You probably forgot to load the library for this task (or compile it dynamically).\n###########################\n",obj->GetName()); return kFALSE; } } return kTRUE; } //______________________________________________________________________________ void AliAnalysisManager::PrintStatus(Option_t *option) const { // Print task hierarchy. if (!fInitOK) { Info("PrintStatus", "Analysis manager %s not initialized : call InitAnalysis() first", GetName()); return; } Bool_t getsysInfo = ((fNSysInfo>0) && (fMode==kLocalAnalysis))?kTRUE:kFALSE; if (getsysInfo) { AliSysInfo::SetVerbose(kTRUE); Info("PrintStatus", "System information will be collected each %lld events", fNSysInfo); } AliAnalysisDataContainer *cont = fCommonInput; if (!cont) cont = (AliAnalysisDataContainer*)fInputs->At(0); printf("=== TOP CONTAINER:\n"); cont->PrintContainer(option,0); // Reset "touched" flag TIter next(fContainers); while ((cont = (AliAnalysisDataContainer*)next())) cont->SetTouched(kFALSE); TIter nextt(fTasks); AliAnalysisTask *task; while ((task=(AliAnalysisTask*)nextt())) task->SetActive(kFALSE); if (!fAutoBranchHandling && !fRequestedBranches.IsNull()) printf("Requested input branches:\n%s\n", fRequestedBranches.Data()); TString sopt(option); sopt.ToUpper(); if (sopt.Contains("ALL")) { if ( fOutputEventHandler ) { cout << TString('_',78) << endl; cout << "OutputEventHandler:" << endl; fOutputEventHandler->Print(" "); } } } //______________________________________________________________________________ void AliAnalysisManager::ResetAnalysis() { // Reset all execution flags and clean containers. TIter nextTask(fTasks); AliAnalysisTask *task; while ((task=(AliAnalysisTask*)nextTask())) { // Clean all tasks task->Reset(); } // CleanContainers(); } //______________________________________________________________________________ void AliAnalysisManager::RunLocalInit() { // Run LocalInit method for all tasks. TDirectory *cdir = gDirectory; if (IsTrainInitialized()) return; TIter nextTask(fTasks); AliAnalysisTask *task; while ((task=(AliAnalysisTask*)nextTask())) { gROOT->cd(); task->LocalInit(); } if (cdir) cdir->cd(); TObject::SetBit(kTasksInitialized, kTRUE); } //______________________________________________________________________________ void AliAnalysisManager::InputFileFromTree(TTree * const tree, TString &fname) { // Retrieves name of the file from tree fname = ""; if (!tree) return; TFile *file = tree->GetCurrentFile(); TString basename; if (!file) { TChain *chain = dynamic_cast<TChain*>(tree); if (!chain || !chain->GetNtrees()) return; basename = gSystem->BaseName(chain->GetListOfFiles()->First()->GetTitle()); } else { basename = gSystem->BaseName(file->GetName()); } Int_t index = basename.Index("#"); fname = basename(index+1, basename.Length()); } //______________________________________________________________________________ Long64_t AliAnalysisManager::StartAnalysis(const char *type, Long64_t nentries, Long64_t firstentry) { // Start analysis having a grid handler. if (!fGridHandler) { Error("StartAnalysis", "Cannot start analysis providing just the analysis type without a grid handler."); Info("===", "Add an AliAnalysisAlien object as plugin for this manager and configure it."); return -1; } TTree *tree = NULL; return StartAnalysis(type, tree, nentries, firstentry); } //______________________________________________________________________________ Long64_t AliAnalysisManager::StartAnalysis(const char *type, TTree * const tree, Long64_t nentries, Long64_t firstentry) { // Start analysis for this manager. Analysis task can be: LOCAL, PROOF, GRID or // MIX. Process nentries starting from firstentry Long64_t retv = 0; // Backup current directory and make sure gDirectory points to gROOT TDirectory *cdir = gDirectory; gROOT->cd(); if (!fInitOK) { Error("StartAnalysis","Analysis manager was not initialized !"); if (cdir) cdir->cd(); return -1; } if (!CheckTasks()) Fatal("StartAnalysis", "Not all needed libraries were loaded"); if (fDebug > 1) { printf("StartAnalysis %s\n",GetName()); AliLog::SetGlobalLogLevel(AliLog::kInfo); } fMaxEntries = nentries; fIsRemote = kFALSE; TString anaType = type; anaType.ToLower(); fMode = kLocalAnalysis; if (anaType.Contains("file")) fIsRemote = kTRUE; if (anaType.Contains("proof")) fMode = kProofAnalysis; else if (anaType.Contains("grid")) fMode = kGridAnalysis; else if (anaType.Contains("mix")) fMode = kMixingAnalysis; if (fInputEventHandler) { TString fname; InputFileFromTree(tree, fname); if (fname.Length()) fInputEventHandler->SetInputFileName(fname); } if (fMode == kGridAnalysis) { fIsRemote = kTRUE; if (!anaType.Contains("terminate")) { if (!fGridHandler) { Error("StartAnalysis", "Cannot start grid analysis without a grid handler."); Info("===", "Add an AliAnalysisAlien object as plugin for this manager and configure it."); if (cdir) cdir->cd(); return -1; } // Write analysis manager in the analysis file cout << "===== RUNNING GRID ANALYSIS: " << GetName() << endl; // run local task configuration RunLocalInit(); if (!fGridHandler->StartAnalysis(nentries, firstentry)) { Info("StartAnalysis", "Grid analysis was stopped and cannot be terminated"); if (cdir) cdir->cd(); return -1; } // Terminate grid analysis if (fSelector && fSelector->GetStatus() == -1) {if (cdir) cdir->cd(); return -1;} if (fGridHandler->GetRunMode() == AliAnalysisGrid::kOffline) {if (cdir) cdir->cd(); return 0;} cout << "===== MERGING OUTPUTS REGISTERED BY YOUR ANALYSIS JOB: " << GetName() << endl; if (!fGridHandler->MergeOutputs()) { // Return if outputs could not be merged or if it alien handler // was configured for offline mode or local testing. if (cdir) cdir->cd(); return 0; } } cout << "===== TERMINATING GRID ANALYSIS JOB: " << GetName() << endl; if (cdir) cdir->cd(); ImportWrappers(NULL); Terminate(); if (cdir) cdir->cd(); return 0; } TString line; SetEventLoop(kFALSE); // Enable event loop mode if a tree was provided if (tree || fGridHandler || fMode==kMixingAnalysis) SetEventLoop(kTRUE); TChain *chain = 0; TString ttype = "TTree"; if (tree && tree->IsA() == TChain::Class()) { chain = (TChain*)tree; if (!chain || !chain->GetListOfFiles()->First()) { Error("StartAnalysis", "Cannot process null or empty chain..."); if (cdir) cdir->cd(); return -1; } ttype = "TChain"; } Bool_t getsysInfo = ((fNSysInfo>0) && (fMode==kLocalAnalysis))?kTRUE:kFALSE; if (getsysInfo) { AliSysInfo::SetVerbose(kTRUE); AliSysInfo::AddStamp("Start", 0); } // Initialize locally all tasks (happens for all modes) TIter next(fTasks); AliAnalysisTask *task; RunLocalInit(); switch (fMode) { case kLocalAnalysis: if (!tree && !fGridHandler) { TIter nextT(fTasks); // Call CreateOutputObjects for all tasks Int_t itask = 0; Bool_t dirStatus = TH1::AddDirectoryStatus(); while ((task=(AliAnalysisTask*)nextT())) { TH1::AddDirectory(kFALSE); task->CreateOutputObjects(); if (!task->CheckPostData()) { Error("SlaveBegin","####### IMPORTANT! ####### \n\n\n\ Task %s (%s) did not call PostData() for all its outputs in (User)CreateOutputObjects()\n\n\ ########### FIX YOUR CODE, THIS WILL PRODUCE A FATAL ERROR IN FUTURE! ###########", task->GetName(), task->ClassName()); } if (getsysInfo) AliSysInfo::AddStamp(Form("%s_CREATEOUTOBJ",task->ClassName()), 0, itask, 0); gROOT->cd(); itask++; } TH1::AddDirectory(dirStatus); if (IsExternalLoop()) { Info("StartAnalysis", "Initialization done. Event loop is controlled externally.\ \nSetData for top container, call ExecAnalysis in a loop and then Terminate manually"); return 0; } ExecAnalysis(); Terminate(); return 0; } fSelector = new AliAnalysisSelector(this); // Check if a plugin handler is used if (fGridHandler) { // Get the chain from the plugin TString dataType = "esdTree"; if (fInputEventHandler) { dataType = fInputEventHandler->GetDataType(); dataType.ToLower(); dataType += "Tree"; } chain = fGridHandler->GetChainForTestMode(dataType); if (!chain) { Error("StartAnalysis", "No chain for test mode. Aborting."); return -1; } cout << "===== RUNNING LOCAL ANALYSIS" << GetName() << " ON CHAIN " << chain->GetName() << endl; retv = chain->Process(fSelector, "", nentries, firstentry); break; } // Run tree-based analysis via AliAnalysisSelector cout << "===== RUNNING LOCAL ANALYSIS " << GetName() << " ON TREE " << tree->GetName() << endl; retv = tree->Process(fSelector, "", nentries, firstentry); break; case kProofAnalysis: fIsRemote = kTRUE; // Check if the plugin is used if (fGridHandler) { return StartAnalysis(type, fGridHandler->GetProofDataSet(), nentries, firstentry); } if (!gROOT->GetListOfProofs() || !gROOT->GetListOfProofs()->GetEntries()) { Error("StartAnalysis", "No PROOF!!! Exiting."); if (cdir) cdir->cd(); return -1; } line = Form("gProof->AddInput((TObject*)%p);", this); gROOT->ProcessLine(line); if (chain) { chain->SetProof(); cout << "===== RUNNING PROOF ANALYSIS " << GetName() << " ON CHAIN " << chain->GetName() << endl; retv = chain->Process("AliAnalysisSelector", "", nentries, firstentry); } else { Error("StartAnalysis", "No chain!!! Exiting."); if (cdir) cdir->cd(); return -1; } break; case kGridAnalysis: fIsRemote = kTRUE; if (!anaType.Contains("terminate")) { if (!fGridHandler) { Error("StartAnalysis", "Cannot start grid analysis without a grid handler."); Info("===", "Add an AliAnalysisAlien object as plugin for this manager and configure it."); if (cdir) cdir->cd(); return -1; } // Write analysis manager in the analysis file cout << "===== RUNNING GRID ANALYSIS: " << GetName() << endl; // Start the analysis via the handler if (!fGridHandler->StartAnalysis(nentries, firstentry)) { Info("StartAnalysis", "Grid analysis was stopped and cannot be terminated"); if (cdir) cdir->cd(); return -1; } // Terminate grid analysis if (fSelector && fSelector->GetStatus() == -1) {if (cdir) cdir->cd(); return -1;} if (fGridHandler->GetRunMode() == AliAnalysisGrid::kOffline) {if (cdir) cdir->cd(); return 0;} cout << "===== MERGING OUTPUTS REGISTERED BY YOUR ANALYSIS JOB: " << GetName() << endl; if (!fGridHandler->MergeOutputs()) { // Return if outputs could not be merged or if it alien handler // was configured for offline mode or local testing. if (cdir) cdir->cd(); return 0; } } cout << "===== TERMINATING GRID ANALYSIS JOB: " << GetName() << endl; ImportWrappers(NULL); Terminate(); if (cdir) cdir->cd(); return 0; case kMixingAnalysis: // Run event mixing analysis if (!fEventPool) { Error("StartAnalysis", "Cannot run event mixing without event pool"); if (cdir) cdir->cd(); return -1; } cout << "===== RUNNING EVENT MIXING ANALYSIS " << GetName() << endl; fSelector = new AliAnalysisSelector(this); while ((chain=fEventPool->GetNextChain())) { next.Reset(); // Call NotifyBinChange for all tasks while ((task=(AliAnalysisTask*)next())) if (!task->IsPostEventLoop()) task->NotifyBinChange(); retv = chain->Process(fSelector); if (retv < 0) { Error("StartAnalysis", "Mixing analysis failed"); if (cdir) cdir->cd(); return retv; } } PackOutput(fSelector->GetOutputList()); Terminate(); } if (cdir) cdir->cd(); return retv; } //______________________________________________________________________________ Long64_t AliAnalysisManager::StartAnalysis(const char *type, const char *dataset, Long64_t nentries, Long64_t firstentry) { // Start analysis for this manager on a given dataset. Analysis task can be: // LOCAL, PROOF or GRID. Process nentries starting from firstentry. if (!fInitOK) { Error("StartAnalysis","Analysis manager was not initialized !"); return -1; } fIsRemote = kTRUE; if (fDebug > 1) printf("StartAnalysis %s\n",GetName()); TString anaType = type; anaType.ToLower(); if (!anaType.Contains("proof")) { Error("StartAnalysis", "Cannot process datasets in %s mode. Try PROOF.", type); return -1; } fMode = kProofAnalysis; TString line; TString proofProcessOpt; SetEventLoop(kTRUE); // Set the dataset flag TObject::SetBit(kUseDataSet); fTree = 0; if (fGridHandler) { // Start proof analysis using the grid handler if (!fGridHandler->StartAnalysis(nentries, firstentry)) { Error("StartAnalysis", "The grid plugin could not start PROOF analysis"); return -1; } // Check if the plugin is in test mode if (fGridHandler->GetRunMode() == AliAnalysisGrid::kTest) { dataset = "test_collection"; } else { dataset = fGridHandler->GetProofDataSet(); } proofProcessOpt = fGridHandler->GetProofProcessOpt(); } if (!gROOT->GetListOfProofs() || !gROOT->GetListOfProofs()->GetEntries()) { Error("StartAnalysis", "No PROOF!!! Exiting."); return -1; } // Initialize locally all tasks RunLocalInit(); line = Form("gProof->AddInput((TObject*)%p);", this); gROOT->ProcessLine(line); Long_t retv; line = Form("gProof->Process(\"%s\", \"AliAnalysisSelector\", \"%s\", %lld, %lld);", dataset,proofProcessOpt.Data(), nentries, firstentry); cout << "===== RUNNING PROOF ANALYSIS " << GetName() << " ON DATASET " << dataset << endl; retv = (Long_t)gROOT->ProcessLine(line); return retv; } //______________________________________________________________________________ TFile *AliAnalysisManager::OpenFile(AliAnalysisDataContainer *cont, const char *option, Bool_t ignoreProof) { // Opens according the option the file specified by cont->GetFileName() and changes // current directory to cont->GetFolderName(). If the file was already opened, it // checks if the option UPDATE was preserved. File open via TProofOutputFile can // be optionally ignored. AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); TString filename = cont->GetFileName(); TFile *f = NULL; if (filename.IsNull()) { ::Error("AliAnalysisManager::OpenFile", "No file name specified for container %s", cont->GetName()); return NULL; } if (mgr->GetAnalysisType()==AliAnalysisManager::kProofAnalysis && cont->IsSpecialOutput() && !ignoreProof) f = mgr->OpenProofFile(cont,option); else { // Check first if the file is already opened f = (TFile*)gROOT->GetListOfFiles()->FindObject(filename); if (f) { // Check if option "UPDATE" was preserved TString opt(option); opt.ToUpper(); if ((opt=="UPDATE") && (opt!=f->GetOption())) ::Info("AliAnalysisManager::OpenFile", "File %s already opened in %s mode!", cont->GetFileName(), f->GetOption()); } else { f = TFile::Open(filename, option); } } if (f && !f->IsZombie() && !f->TestBit(TFile::kRecovered)) { cont->SetFile(f); // Cd to file f->cd(); // Check for a folder request TString dir = cont->GetFolderName(); if (!dir.IsNull()) { if (!f->GetDirectory(dir)) f->mkdir(dir); f->cd(dir); } return f; } ::Fatal("AliAnalysisManager::OpenFile", "File %s could not be opened", filename.Data()); cont->SetFile(NULL); return NULL; } //______________________________________________________________________________ TFile *AliAnalysisManager::OpenProofFile(AliAnalysisDataContainer *cont, const char *option, const char *extaod) { // Opens a special output file used in PROOF. TString line; TString filename = cont->GetFileName(); if (cont == fCommonOutput) { if (fOutputEventHandler) { if (strlen(extaod)) filename = extaod; filename = fOutputEventHandler->GetOutputFileName(); } else Fatal("OpenProofFile","No output container. Exiting."); } TFile *f = NULL; if (fMode!=kProofAnalysis || !fSelector) { Fatal("OpenProofFile","Cannot open PROOF file %s: no PROOF or selector",filename.Data()); return NULL; } if (fSpecialOutputLocation.Length()) { f = (TFile*)gROOT->GetListOfFiles()->FindObject(filename); if (f) { // Check if option "UPDATE" was preserved TString opt(option); opt.ToUpper(); if ((opt=="UPDATE") && (opt!=f->GetOption())) ::Info("OpenProofFile", "File %s already opened in %s mode!", cont->GetFileName(), f->GetOption()); } else { f = new TFile(filename, option); } if (f && !f->IsZombie() && !f->TestBit(TFile::kRecovered)) { cont->SetFile(f); // Cd to file f->cd(); // Check for a folder request TString dir = cont->GetFolderName(); if (dir.Length()) { if (!f->GetDirectory(dir)) f->mkdir(dir); f->cd(dir); } return f; } Fatal("OpenProofFile", "File %s could not be opened", cont->GetFileName()); cont->SetFile(NULL); return NULL; } // Check if there is already a proof output file in the output list TObject *pof = fSelector->GetOutputList()->FindObject(filename); if (pof) { // Get the actual file line = Form("((TProofOutputFile*)%p)->GetFileName();", pof); filename = (const char*)gROOT->ProcessLine(line); if (fDebug>1) { printf("File: %s already booked via TProofOutputFile\n", filename.Data()); } f = (TFile*)gROOT->GetListOfFiles()->FindObject(filename); if (!f) { Fatal("OpenProofFile", "Proof output file found but no file opened for %s", filename.Data()); return NULL; } // Check if option "UPDATE" was preserved TString opt(option); opt.ToUpper(); if ((opt=="UPDATE") && (opt!=f->GetOption())) Fatal("OpenProofFile", "File %s already opened, but not in UPDATE mode!", cont->GetFileName()); } else { if (cont->IsRegisterDataset()) { TString dsetName = filename; dsetName.ReplaceAll(".root", cont->GetTitle()); dsetName.ReplaceAll(":","_"); if (fDebug>1) printf("Booking dataset: %s\n", dsetName.Data()); line = Form("TProofOutputFile *pf = new TProofOutputFile(\"%s\", \"DROV\", \"%s\");", filename.Data(), dsetName.Data()); } else { if (fDebug>1) printf("Booking TProofOutputFile: %s to be merged\n", filename.Data()); line = Form("TProofOutputFile *pf = new TProofOutputFile(\"%s\");", filename.Data()); } if (fDebug > 1) printf("=== %s\n", line.Data()); gROOT->ProcessLine(line); line = Form("pf->OpenFile(\"%s\");", option); gROOT->ProcessLine(line); f = gFile; if (fDebug > 1) { gROOT->ProcessLine("pf->Print()"); printf(" == proof file name: %s", f->GetName()); } // Add to proof output list line = Form("((TList*)%p)->Add(pf);",fSelector->GetOutputList()); if (fDebug > 1) printf("=== %s\n", line.Data()); gROOT->ProcessLine(line); } if (f && !f->IsZombie() && !f->TestBit(TFile::kRecovered)) { cont->SetFile(f); // Cd to file f->cd(); // Check for a folder request TString dir = cont->GetFolderName(); if (!dir.IsNull()) { if (!f->GetDirectory(dir)) f->mkdir(dir); f->cd(dir); } return f; } Fatal("OpenProofFile", "File %s could not be opened", cont->GetFileName()); cont->SetFile(NULL); return NULL; } //______________________________________________________________________________ void AliAnalysisManager::ExecAnalysis(Option_t *option) { // Execute analysis. static Long64_t nentries = 0; static TTree *lastTree = 0; static TStopwatch *timer = new TStopwatch(); // Only the first call to Process will trigger a true Notify. Other Notify // coming before is ignored. if (!TObject::TestBit(AliAnalysisManager::kTrueNotify)) { TObject::SetBit(AliAnalysisManager::kTrueNotify); Notify(); } if (fDebug > 0) printf("MGR: Processing event #%d\n", fNcalls); else { if (fTree && (fTree != lastTree)) { nentries += fTree->GetEntries(); lastTree = fTree; } if (!fNcalls) timer->Start(); if (!fIsRemote && TObject::TestBit(kUseProgressBar)) ProgressBar("Processing event", fNcalls, TMath::Min(fMaxEntries,nentries), timer, kFALSE); } fIOTimer->Start(kTRUE); gROOT->cd(); TDirectory *cdir = gDirectory; Bool_t getsysInfo = ((fNSysInfo>0) && (fMode==kLocalAnalysis))?kTRUE:kFALSE; if (getsysInfo && ((fNcalls%fNSysInfo)==0)) AliSysInfo::AddStamp("Exec_start", (Int_t)fNcalls); if (!fInitOK) { Error("ExecAnalysis", "Analysis manager was not initialized !"); if (cdir) cdir->cd(); return; } fNcalls++; AliAnalysisTask *task; // Reset the analysis ResetAnalysis(); // Check if the top tree is active. if (fTree) { if (getsysInfo && ((fNcalls%fNSysInfo)==0)) AliSysInfo::AddStamp("Handlers_BeginEventGroup",fNcalls, 1002, 0); TIter next(fTasks); // De-activate all tasks (not needed anymore after ResetAnalysis // while ((task=(AliAnalysisTask*)next())) task->SetActive(kFALSE); AliAnalysisDataContainer *cont = fCommonInput; if (!cont) cont = (AliAnalysisDataContainer*)fInputs->At(0); if (!cont) { Error("ExecAnalysis","Cannot execute analysis in TSelector mode without at least one top container"); if (cdir) cdir->cd(); return; } cont->SetData(fTree); // This set activity for all tasks reading only from the top container Long64_t entry = fTree->GetTree()->GetReadEntry(); // // Call BeginEvent() for optional input/output and MC services if (fInputEventHandler) fInputEventHandler ->BeginEvent(entry); if (fOutputEventHandler) fOutputEventHandler ->BeginEvent(entry); if (fMCtruthEventHandler) fMCtruthEventHandler->BeginEvent(entry); gROOT->cd(); if (getsysInfo && ((fNcalls%fNSysInfo)==0)) AliSysInfo::AddStamp("Handlers_BeginEvent",fNcalls, 1000, 0); // // Execute the tasks // TIter next1(cont->GetConsumers()); fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); fCPUTimer->Start(kTRUE); TIter next1(fTopTasks); Int_t itask = 0; while ((task=(AliAnalysisTask*)next1())) { task->SetActive(kTRUE); if (fDebug >1) { cout << " Executing task " << task->GetName() << endl; } if (fStatistics) fStatistics->StartTimer(GetTaskIndex(task), task->GetName(), task->ClassName()); UInt_t taskvmem = task->GetUniqueID(); if (taskvmem<2147483648) { TString pictname = Form("%s_%s", task->GetName(), task->ClassName()); try { ProcInfo_t pinfo; gSystem->GetProcInfo(&pinfo); Long_t vmem = pinfo.fMemVirtual + pinfo.fMemResident; task->ExecuteTask(option); // C.L. gSystem->GetProcInfo(&pinfo); vmem -= pinfo.fMemVirtual + pinfo.fMemResident; task->SetUniqueID(taskvmem+vmem); if (task->GetUniqueID()>2147483647) { Error("ExecAnalysis", "Task %s takes more vmem %ld KB than still available %u KB, task disabled", pictname.Data(), -vmem, taskvmem); } else if (vmem<0) { if (!task->InheritsFrom("AliPhysicsSelectionTask")) Warning("ExecAnalysis", "Task %s uses %ld KB vmem in UserExec (entry=%d), if seen repeatedly check for a memory leak!", pictname.Data(), -vmem, (Int_t)entry); } } catch(std::exception const& e) { Error("ExecAnalysis", "Caught exception %s in %s, task disabled", e.what(), pictname.Data()); task->SetUniqueID(-1); } catch(...) { Error("ExecAnalysis", "Caught exception in %s, task disabled", pictname.Data()); task->SetUniqueID(-1); } } if (fStatistics) fStatistics->StopTimer(); gROOT->cd(); if (getsysInfo && ((fNcalls%fNSysInfo)==0)) AliSysInfo::AddStamp(task->ClassName(), fNcalls, itask, 1); itask++; } fCPUTimer->Stop(); fCPUTime += fCPUTimer->RealTime(); fIOTimer->Start(kTRUE); // // Call FinishEvent() for optional output and MC services if (fInputEventHandler) fInputEventHandler ->FinishEvent(); if (fOutputEventHandler) fOutputEventHandler ->FinishEvent(); if (fMCtruthEventHandler) fMCtruthEventHandler->FinishEvent(); // Gather system information if requested if (getsysInfo && ((fNcalls%fNSysInfo)==0)) AliSysInfo::AddStamp("Handlers_FinishEvent",fNcalls, 1001, 1); if (cdir) cdir->cd(); fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); return; } // The event loop is not controlled by TSelector // // Call BeginEvent() for optional input/output and MC services fIOTimer->Start(kTRUE); if (fInputEventHandler) fInputEventHandler ->BeginEvent(-1); if (fOutputEventHandler) fOutputEventHandler ->BeginEvent(-1); if (fMCtruthEventHandler) fMCtruthEventHandler->BeginEvent(-1); fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); gROOT->cd(); if (getsysInfo && ((fNcalls%fNSysInfo)==0)) AliSysInfo::AddStamp("Handlers_BeginEvent",fNcalls, 1000, 0); fCPUTimer->Start(kTRUE); TIter next2(fTopTasks); while ((task=(AliAnalysisTask*)next2())) { task->SetActive(kTRUE); if (fDebug > 1) { cout << " Executing task " << task->GetName() << endl; } if (fStatistics) fStatistics->StartTimer(GetTaskIndex(task), task->GetName(), task->ClassName()); task->ExecuteTask(option); if (fStatistics) fStatistics->StopTimer(); gROOT->cd(); } fCPUTimer->Stop(); fCPUTime += fCPUTimer->RealTime(); // // Call FinishEvent() for optional output and MC services fIOTimer->Start(kTRUE); if (fInputEventHandler) fInputEventHandler ->FinishEvent(); if (fOutputEventHandler) fOutputEventHandler ->FinishEvent(); if (fMCtruthEventHandler) fMCtruthEventHandler->FinishEvent(); if (getsysInfo && ((fNcalls%fNSysInfo)==0)) AliSysInfo::AddStamp("Handlers_FinishEvent",fNcalls, 1000, 1); if (cdir) cdir->cd(); fIOTimer->Stop(); fIOTime += fIOTimer->RealTime(); } //______________________________________________________________________________ Bool_t AliAnalysisManager::IsPipe(std::ostream &out) { // Check if the stdout is connected to a pipe (C.Holm) Bool_t ispipe = kFALSE; out.seekp(0, std::ios_base::cur); if (out.fail()) { out.clear(); if (errno == ESPIPE) ispipe = kTRUE; } return ispipe; } //______________________________________________________________________________ void AliAnalysisManager::SetInputEventHandler(AliVEventHandler* const handler) { // Set the input event handler and create a container for it. Changed(); fInputEventHandler = handler; if (!fCommonInput) fCommonInput = CreateContainer("cAUTO_INPUT", TChain::Class(), AliAnalysisManager::kInputContainer); } //______________________________________________________________________________ void AliAnalysisManager::SetOutputEventHandler(AliVEventHandler* const handler) { // Set the input event handler and create a container for it. Changed(); fOutputEventHandler = handler; if (!fCommonOutput) fCommonOutput = CreateContainer("cAUTO_OUTPUT", TTree::Class(), AliAnalysisManager::kOutputContainer, "default"); fCommonOutput->SetSpecialOutput(); } //______________________________________________________________________________ void AliAnalysisManager::SetDebugLevel(UInt_t level) { // Set verbosity of the analysis manager. If the progress bar is used, the call is ignored if (TObject::TestBit(kUseProgressBar)) { Info("SetDebugLevel","Ignored. Disable the progress bar first."); return; } fDebug = level; } //______________________________________________________________________________ void AliAnalysisManager::SetUseProgressBar(Bool_t flag, Int_t freq) { // Enable a text mode progress bar. Resets debug level to 0. Info("SetUseProgressBar", "Progress bar enabled, updated every %d events.\n ### NOTE: Debug level reset to 0 ###", freq); TObject::SetBit(kUseProgressBar,flag); fPBUpdateFreq = freq; fDebug = 0; } //______________________________________________________________________________ void AliAnalysisManager::RegisterExtraFile(const char *fname) { // This method is used externally to register output files which are not // connected to any output container, so that the manager can properly register, // retrieve or merge them when running in distributed mode. The file names are // separated by blancs. The method has to be called in MyAnalysisTask::LocalInit(). if (fExtraFiles.Contains(fname)) return; if (fExtraFiles.Length()) fExtraFiles += " "; fExtraFiles += fname; } //______________________________________________________________________________ Bool_t AliAnalysisManager::GetFileFromWrapper(const char *filename, const TList *source) { // Copy a file from the location specified ina the wrapper with the same name from the source list. char fullPath[512]; char chUrl[512]; char tmp[1024]; TObject *pof = source->FindObject(filename); if (!pof || !pof->InheritsFrom("TProofOutputFile")) { Error("GetFileFromWrapper", "TProofOutputFile object not found in output list for file %s", filename); return kFALSE; } gROOT->ProcessLine(Form("sprintf((char*)%p, \"%%s\", ((TProofOutputFile*)%p)->GetOutputFileName());", fullPath, pof)); gROOT->ProcessLine(Form("sprintf((char*)%p, \"%%s\", gProof->GetUrl());",chUrl)); TString clientUrl(chUrl); TString fullPath_str(fullPath); if (clientUrl.Contains("localhost")){ TObjArray* array = fullPath_str.Tokenize ( "//" ); TObjString *strobj = ( TObjString *)array->At(1); TObjArray* arrayPort = strobj->GetString().Tokenize ( ":" ); TObjString *strobjPort = ( TObjString *) arrayPort->At(1); fullPath_str.ReplaceAll(strobj->GetString().Data(),"localhost:PORT"); fullPath_str.ReplaceAll(":PORT",Form(":%s",strobjPort->GetString().Data())); if (fDebug > 1) Info("GetFileFromWrapper","Using tunnel from %s to %s",fullPath_str.Data(),filename); delete arrayPort; delete array; } else if (clientUrl.Contains("__lite__")) { // Special case for ProofLite environement - get file info and copy. gROOT->ProcessLine(Form("sprintf((char*)%p,\"%%s\",((TProofOutputFile*)%p)->GetDir());", tmp, pof)); fullPath_str = Form("%s/%s", tmp, fullPath); } if (fDebug > 1) Info("GetFileFromWrapper","Copying file %s from PROOF scratch space to %s", fullPath_str.Data(),filename); Bool_t gotit = TFile::Cp(fullPath_str.Data(), filename); if (!gotit) Error("GetFileFromWrapper", "Could not get file %s from proof scratch space", filename); return gotit; } //______________________________________________________________________________ void AliAnalysisManager::GetAnalysisTypeString(TString &type) const { // Fill analysis type in the provided string. switch (fMode) { case kLocalAnalysis: type = "local"; return; case kProofAnalysis: type = "proof"; return; case kGridAnalysis: type = "grid"; return; case kMixingAnalysis: type = "mix"; } } //______________________________________________________________________________ Bool_t AliAnalysisManager::ValidateOutputFiles() const { // Validate all output files. TIter next(fOutputs); AliAnalysisDataContainer *output; TDirectory *cdir = gDirectory; TString openedFiles; while ((output=(AliAnalysisDataContainer*)next())) { if (output->IsRegisterDataset()) continue; TString filename = output->GetFileName(); if (filename == "default") { if (!fOutputEventHandler) continue; filename = fOutputEventHandler->GetOutputFileName(); // Main AOD may not be there if (gSystem->AccessPathName(filename)) continue; } // Check if the file is closed if (openedFiles.Contains(filename)) continue;; TFile *file = (TFile*)gROOT->GetListOfFiles()->FindObject(filename); if (file) { Warning("ValidateOutputs", "File %s was not closed. Closing.", filename.Data()); // Clear file list to release object ownership to user. // file->Clear(); file->Close(); } file = TFile::Open(filename); if (!file || file->IsZombie() || file->TestBit(TFile::kRecovered)) { Error("ValidateOutputs", "Output file <%s> was not created or invalid", filename.Data()); if (cdir) cdir->cd(); return kFALSE; } file->Close(); openedFiles += filename; openedFiles += " "; } if (cdir) cdir->cd(); return kTRUE; } //______________________________________________________________________________ void AliAnalysisManager::ProgressBar(const char *opname, Long64_t current, Long64_t size, TStopwatch * const watch, Bool_t last, Bool_t refresh) { // Implements a nice text mode progress bar. static Long64_t icount = 0; static TString oname; static TString nname; static Long64_t ocurrent = 0; static Long64_t osize = 0; static Int_t oseconds = 0; static TStopwatch *owatch = 0; static Bool_t oneoftwo = kFALSE; static Int_t nrefresh = 0; static Int_t nchecks = 0; static char lastChar = 0; const char symbol[4] = {'-','\\','|','/'}; if (!lastChar) lastChar = (IsPipe(std::cerr))?'\r':'\n'; if (!refresh) { nrefresh = 0; if (!size) return; owatch = watch; oname = opname; ocurrent = TMath::Abs(current); osize = TMath::Abs(size); if (ocurrent > osize) ocurrent=osize; } else { nrefresh++; if (!osize) return; } if ((current % fPBUpdateFreq) != 0) return; icount++; char progress[11] = " "; Int_t ichar = icount%4; Double_t time = 0.; Int_t hours = 0; Int_t minutes = 0; Int_t seconds = 0; if (owatch && !last) { owatch->Stop(); time = owatch->RealTime(); seconds = int(time) % 60; minutes = (int(time) / 60) % 60; hours = (int(time) / 60 / 60); if (refresh) { if (oseconds==seconds) { owatch->Continue(); return; } oneoftwo = !oneoftwo; } oseconds = seconds; } if (refresh && oneoftwo) { nname = oname; if (nchecks <= 0) nchecks = nrefresh+1; Int_t pctdone = (Int_t)(100.*nrefresh/nchecks); oname = Form(" == %d%% ==", pctdone); } Double_t percent = 100.0*ocurrent/osize; Int_t nchar = Int_t(percent/10); if (nchar>10) nchar=10; Int_t i; for (i=0; i<nchar; i++) progress[i] = '='; progress[nchar] = symbol[ichar]; for (i=nchar+1; i<10; i++) progress[i] = ' '; progress[10] = '\0'; oname += " "; oname.Remove(20); if(size<10000) fprintf(stderr, "%s [%10s] %4lld ", oname.Data(), progress, ocurrent); else if(size<100000) fprintf(stderr, "%s [%10s] %5lld ",oname.Data(), progress, ocurrent); else fprintf(stderr, "%s [%10s] %7lld ",oname.Data(), progress, ocurrent); if (time>0.) { Int_t full = Int_t(ocurrent > 0 ? time * (float(osize)/ocurrent) + .5 : 99*3600+59*60+59); Int_t remain = Int_t(full - time); Int_t rsec = remain % 60; Int_t rmin = (remain / 60) % 60; Int_t rhour = (remain / 60 / 60); fprintf(stderr, "[%6.2f %%] TIME %.2d:%.2d:%.2d ETA %.2d:%.2d:%.2d%c", percent, hours, minutes, seconds, rhour, rmin, rsec, lastChar); } else fprintf(stderr, "[%6.2f %%]%c", percent, lastChar); if (refresh && oneoftwo) oname = nname; if (owatch) owatch->Continue(); if (last) { icount = 0; owatch = 0; ocurrent = 0; osize = 0; oseconds = 0; oneoftwo = kFALSE; nrefresh = 0; fprintf(stderr, "\n"); } } //______________________________________________________________________________ void AliAnalysisManager::DoLoadBranch(const char *name) { // Get tree and load branch if needed. static Long64_t crtEntry = -100; if (fAutoBranchHandling || !fTree) return; TBranch *br = dynamic_cast<TBranch*>(fTable.FindObject(name)); if (!br) { br = fTree->GetBranch(name); if (!br) { Error("DoLoadBranch", "Could not find branch %s",name); return; } fTable.Add(br); } if (br->GetReadEntry()==fCurrentEntry) return; Long64_t readbytes = br->GetEntry(GetCurrentEntry()); if (readbytes<0) { Error("DoLoadBranch", "Could not load entry %lld from branch %s",GetCurrentEntry(), name); if (crtEntry != fCurrentEntry) { CountEvent(1,0,1,0); crtEntry = fCurrentEntry; } } else { if (crtEntry != fCurrentEntry) { CountEvent(1,1,0,0); crtEntry = fCurrentEntry; } } } //______________________________________________________________________________ void AliAnalysisManager::AddStatisticsTask(UInt_t offlineMask) { // Add the statistics task to the manager. if (fStatistics) { Info("AddStatisticsTask", "Already added"); return; } TString line = Form("AliAnalysisTaskStat::AddToManager(%u);", offlineMask); gROOT->ProcessLine(line); } //______________________________________________________________________________ void AliAnalysisManager::CountEvent(Int_t ninput, Int_t nprocessed, Int_t nfailed, Int_t naccepted) { // Bookkeep current event; if (!fStatistics) return; fStatistics->AddInput(ninput); fStatistics->AddProcessed(nprocessed); fStatistics->AddFailed(nfailed); fStatistics->AddAccepted(naccepted); } //______________________________________________________________________________ void AliAnalysisManager::AddStatisticsMsg(const char *line) { // Add a line in the statistics message. If available, the statistics message is written // at the end of the SlaveTerminate phase on workers AND at the end of Terminate // on the client. if (!strlen(line)) return; if (!fStatisticsMsg.IsNull()) fStatisticsMsg += "\n"; fStatisticsMsg += line; } //______________________________________________________________________________ void AliAnalysisManager::WriteStatisticsMsg(Int_t) { // If fStatistics is present, write the file in the format ninput_nprocessed_nfailed_naccepted.stat static Bool_t done = kFALSE; if (done) return; done = kTRUE; if (!fStatistics) return; ofstream out; AddStatisticsMsg(Form("Number of input events: %lld",fStatistics->GetNinput())); AddStatisticsMsg(Form("Number of processed events: %lld",fStatistics->GetNprocessed())); AddStatisticsMsg(Form("Number of failed events (I/O): %lld",fStatistics->GetNfailed())); AddStatisticsMsg(Form("Number of accepted events for mask %s: %lld", AliAnalysisStatistics::GetMaskAsString(fStatistics->GetOfflineMask()), fStatistics->GetNaccepted())); out.open(Form("%lld_%lld_%lld_%lld.stat",fStatistics->GetNinput(), fStatistics->GetNprocessed(),fStatistics->GetNfailed(), fStatistics->GetNaccepted()), ios::out); out << fStatisticsMsg << endl; out.close(); } //______________________________________________________________________________ const char* AliAnalysisManager::GetOADBPath() { // returns the path of the OADB // this static function just depends on environment variables static TString oadbPath; if (gSystem->Getenv("OADB_PATH")) oadbPath = gSystem->Getenv("OADB_PATH"); else if (gSystem->Getenv("ALICE_ROOT")) oadbPath.Form("%s/OADB", gSystem->Getenv("ALICE_ROOT")); else ::Fatal("AliAnalysisManager::GetOADBPath", "Cannot figure out AODB path. Define ALICE_ROOT or OADB_PATH!"); return oadbPath; } //______________________________________________________________________________ void AliAnalysisManager::SetGlobalStr(const char *key, const char *value) { // Define a custom string variable mapped to a global unique name. The variable // can be then retrieved by a given analysis macro via GetGlobalStr(key). AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); if (!mgr) { ::Error("AliAnalysisManager::SetGlobalStr", "No analysis manager defined"); return; } Bool_t valid = kFALSE; TString existing = AliAnalysisManager::GetGlobalStr(key, valid); if (valid) { ::Error("AliAnalysisManager::SetGlobalStr", "Global %s = %s already defined.", key, existing.Data()); return; } mgr->GetGlobals()->Add(new TObjString(key), new TObjString(value)); } //______________________________________________________________________________ const char *AliAnalysisManager::GetGlobalStr(const char *key, Bool_t &valid) { // Static method to retrieve a global variable defined via SetGlobalStr. valid = kFALSE; AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); if (!mgr) return 0; TObject *value = mgr->GetGlobals()->GetValue(key); if (!value) return 0; valid = kTRUE; return value->GetName(); } //______________________________________________________________________________ void AliAnalysisManager::SetGlobalInt(const char *key, Int_t value) { // Define a custom integer variable mapped to a global unique name. The variable // can be then retrieved by a given analysis macro via GetGlobalInt(key). AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); if (!mgr) { ::Error("AliAnalysisManager::SetGlobalStr", "No analysis manager defined"); return; } Bool_t valid = kFALSE; Int_t existing = AliAnalysisManager::GetGlobalInt(key, valid); if (valid) { ::Error("AliAnalysisManager::SetGlobalInt", "Global %s = %i already defined.", key, existing); return; } mgr->GetGlobals()->Add(new TObjString(key), new TObjString(TString::Format("%i",value))); } //______________________________________________________________________________ Int_t AliAnalysisManager::GetGlobalInt(const char *key, Bool_t &valid) { // Static method to retrieve a global variable defined via SetGlobalInt. valid = kFALSE; AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); if (!mgr) return 0; TObject *value = mgr->GetGlobals()->GetValue(key); if (!value) return 0; valid = kTRUE; TString s = value->GetName(); return s.Atoi(); } //______________________________________________________________________________ void AliAnalysisManager::SetGlobalDbl(const char *key, Double_t value) { // Define a custom double precision variable mapped to a global unique name. The variable // can be then retrieved by a given analysis macro via GetGlobalInt(key). AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); if (!mgr) { ::Error("AliAnalysisManager::SetGlobalStr", "No analysis manager defined"); return; } Bool_t valid = kFALSE; Double_t existing = AliAnalysisManager::GetGlobalDbl(key, valid); if (valid) { ::Error("AliAnalysisManager::SetGlobalInt", "Global %s = %g already defined.", key, existing); return; } mgr->GetGlobals()->Add(new TObjString(key), new TObjString(TString::Format("%f.16",value))); } //______________________________________________________________________________ Double_t AliAnalysisManager::GetGlobalDbl(const char *key, Bool_t &valid) { // Static method to retrieve a global variable defined via SetGlobalDbl. valid = kFALSE; AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); if (!mgr) return 0; TObject *value = mgr->GetGlobals()->GetValue(key); if (!value) return 0; valid = kTRUE; TString s = value->GetName(); return s.Atof(); } //______________________________________________________________________________ void AliAnalysisManager::AddClassDebug(const char *className, Int_t debugLevel) { // Sets Class debug level if (!fDebugOptions) { fDebugOptions = new TObjArray(); fDebugOptions->SetOwner(kTRUE); } TNamed *debugOpt = (TNamed*)fDebugOptions->FindObject(className); if (!debugOpt) { AliInfo(TString::Format("Adding debug level %d for class %s",debugLevel,className).Data()); fDebugOptions->Add(new TNamed(className,TString::Format("%d",debugLevel).Data())); } else { TString oldDebugStr = debugOpt->GetTitle(); Int_t oldDebug = oldDebugStr.Atoi(); if (debugLevel > oldDebug) { AliWarning(TString::Format("Overwriting debug level to %d class %s, because it is higher then previously set (%d).",debugLevel,className,oldDebug).Data()); debugOpt->SetTitle(TString::Format("%d",debugLevel).Data()); } else { AliWarning(TString::Format("Ignoring debug level to %d class %s, because it is smaller then previously set (%d).",debugLevel,className,oldDebug).Data()); } } } //______________________________________________________________________________ void AliAnalysisManager::ApplyDebugOptions() { // Apply debug options if (!fDebugOptions) return; TIter next(fDebugOptions); TNamed *debug; TString debugLevel; while ((debug=dynamic_cast<TNamed*>(next()))) { debugLevel = debug->GetTitle(); AliInfo(TString::Format("Class=%s debulLevel=%d",debug->GetName(),debugLevel.Atoi()).Data()); AliLog::SetClassDebugLevel(debug->GetName(), debugLevel.Atoi()); } } //______________________________________________________________________________ Bool_t AliAnalysisManager::IsMacroLoaded(const char * filename) { // Check if a macro was loaded. return fgMacroNames.Contains(filename); } //______________________________________________________________________________ Int_t AliAnalysisManager::LoadMacro(const char *filename, Int_t *error, Bool_t check) { // Redirection of gROOT->LoadMacro which makes sure the same macro is not loaded // twice TString macroName = gSystem->BaseName(filename); // Strip appended +, ++, +g, +O Int_t index = macroName.Index("+"); if (index>0) macroName.Remove(index); if (fgMacroNames.Contains(macroName)) { // Macro with the same name loaded already in this root session, do // nothing error = 0; return 0; } Int_t ret = gROOT->LoadMacro(filename,error,check); // In case of error return the error code if (ret) return ret; // Append the macro name to the loaded macros list fgMacroNames += macroName; fgMacroNames += " "; return ret; } //______________________________________________________________________________ void AliAnalysisManager::Lock() { // Security lock. This is to detect NORMAL user errors and not really to // protect against intentional hacks. if (fLocked) return; fLocked = kTRUE; if (fInputEventHandler) fInputEventHandler->Lock(); if (fOutputEventHandler) fOutputEventHandler->Lock(); if (fMCtruthEventHandler) fMCtruthEventHandler->Lock(); Info("Lock","====== ANALYSIS MANAGER LOCKED ======"); } //______________________________________________________________________________ void AliAnalysisManager::UnLock() { // Verbose unlocking. Hackers will be punished ;-) ... if (!fLocked) return; fLocked = kFALSE; if (fInputEventHandler) fInputEventHandler->UnLock(); if (fOutputEventHandler) fOutputEventHandler->UnLock(); if (fMCtruthEventHandler) fMCtruthEventHandler->UnLock(); Info("UnLock", "====== ANALYSIS MANAGER UNLOCKED ======"); } //______________________________________________________________________________ void AliAnalysisManager::Changed() { // All critical setters pass through the Changed method that throws an exception // in case the lock was set. if (fLocked) Fatal("Changed","Critical setter called in locked mode"); } //______________________________________________________________________________ void AliAnalysisManager::InitInputData(AliVEvent* esdEvent, AliVfriendEvent* esdFriend) { // Method to propagte to all the connected tasks the HLT event. // This method expects that the input hanlder is of type HLT, should // not be used otherwise if (fInputEventHandler) { TString classInputHandler = fInputEventHandler->ClassName(); if (classInputHandler.Contains("HLT")){ TObjArray* arrTasks = GetTasks(); fInputEventHandler->InitTaskInputData(esdEvent, esdFriend, arrTasks); } else { Fatal("PropagateHLTEvent", "Input Handler not of type HLT, we cannot use this method!"); } } else { Fatal("PropagateHLTEvent", "Input Handler not found, we cannot use this method!"); } }
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