MDRP_REDUCE2D: Log file mgDiag2d-7341-57004.log opened Fri Mar 11 13:14:46 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp127 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-7341-57004.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 7341 at Fri Mar 11 13:14:47 2016 MDRP_REDUCE2D: Slitmap file = slitmap-7341-57004-03.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0073XX/7341/slitmap-7341-57004-03.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00190909.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.04140 1.97184 1.93625 1.87807 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00190909.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00050 MDRP_CCPEAKS: b1: Traces shifted by -1.90000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.969001 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 709 MDRP_CCPEAKS: b1: Number of Missing Fibers: 0 MDRP_CCPEAKS: b1: Number of missing edge fibers: 0 MDRP_CCPEAKS: b1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b1: No Missing Fibers. MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00190909.fit XY2TRACESET: b1: Total rejected = 508028 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 11 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.91 0.98 1.04 1.04 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 488766 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.91 0.98 1.04 1.04 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00190909.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00190909.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00190910.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.01892 1.95699 1.91163 1.86341 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 1.68619e-05 MDRP_CALIB: b1: Arc sdR-b1-00190910.fit paired with flat sdR-b1-00190909.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 35055 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 406 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 110 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 34 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 7 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 35613 MDRP_CALIB: b1: Shifting traces with match_trace 0.0314941 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02404 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02416 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.735407 MDRP_FITARCIMAGE: b1: Best correlation = 0.735407 MDRP_FITARCIMAGE: b1: ASET = 3.68022 0.20257 -0.02416 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68163 0.20088 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.797222 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68153 0.20091 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68143 0.20121 -0.02418 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.795668 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02395 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68123 0.20141 -0.02407 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792203 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68092 0.20166 -0.02414 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792554 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68072 0.20199 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794601 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68063 0.20203 -0.02415 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788871 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02422 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.790601 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790000 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789368 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786964 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68011 0.20300 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68011 0.20274 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786402 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02404 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20283 -0.02416 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.783935 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20284 -0.02422 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.785250 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786251 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02397 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20249 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.783266 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20246 -0.02421 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.787992 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20246 -0.02421 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.790524 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20223 -0.02420 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.788518 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68112 0.20185 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68102 0.20189 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791824 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20178 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68132 0.20152 -0.02419 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792799 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20124 -0.02394 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68162 0.20127 -0.02406 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790257 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68192 0.20077 -0.02405 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68182 0.20107 -0.02417 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.792676 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.74596118 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4847 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4815 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4770 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4728 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4761 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4863 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4862 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 4866 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 4925 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 4957 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 4957 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 6.10983e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.14266e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 3.05693e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.98458e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.13897e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 8.55683e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 3.26150e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.74668e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.06142e-05 MDRP_FITARCIMAGE: b1: Line 11 4662.3520 5.83481e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.80032e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.81605e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.89091e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 2.01402e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.40584e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.73819e-05 Reject MDRP_FITARCIMAGE: b1: Line 18 5400.5616 5.15383e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.22659e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.10528e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.10519e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.08297e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.06617e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.51913e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.46666e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.28834e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.24861e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.22876e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.03376e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.91236e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.41388e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.10725e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 9.78447e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 8.62057e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.10205e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.62763e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 2.85950e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 3.63984e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.99607e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.80370e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.52064e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 3.95754e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 4.84429e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 3.98381e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 112. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 6293 pixels XY2TRACESET: b1: Total rejected = 1943 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.10 1.12 1.12 1.15 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00190910.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00190909.fit paired with arc sdR-b1-00190910.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3485.3344 6580.6400 MDRP_SUPERFLAT: b1: Creating superflat from 709 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1054389 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.11262 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7341/57004/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 717. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 726. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0073XX/7341/slitmap-7341-57004-03.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00190909.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.93695 3.46929 3.52974 3.38583 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00190909.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00100 MDRP_CCPEAKS: r1: Traces shifted by -2.30000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.95743726 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 704 MDRP_CCPEAKS: r1: Number of Missing Fibers: 5 MDRP_CCPEAKS: r1: Number of missing edge fibers: 0 MDRP_CCPEAKS: r1: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 5 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 206 230 231 545 563 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 1304 1424 1429 2944 3038 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 205 229 230 544 562 MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 544 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 562 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00190909.fit XY2TRACESET: r1: Total rejected = 81380 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 863 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.98 1.19 1.11 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 56581 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 389 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.98 1.19 1.11 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 7 bright pixels in extracted flat sdR-r1-00190909.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00190909.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00190910.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.92391 3.45830 3.50936 3.36949 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000354068 MDRP_CALIB: r1: Arc sdR-r1-00190910.fit paired with flat sdR-r1-00190909.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 68978 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1304 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 463 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 157 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 68 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 35 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 20 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 71041 MDRP_CALIB: r1: Shifting traces with match_trace 0.0253906 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 348 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16546 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772285 MDRP_FITARCIMAGE: r1: Best correlation = 0.772285 MDRP_FITARCIMAGE: r1: ASET = 3.89448 0.16546 -0.01893 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89605 0.16293 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89613 0.16317 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768897 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89590 0.16339 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89582 0.16341 -0.01858 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768935 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16389 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16389 -0.01859 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767400 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89527 0.16400 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89527 0.16427 -0.01866 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768846 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16445 -0.01867 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16445 -0.01867 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767859 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16450 -0.01868 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89495 0.16477 -0.01874 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767246 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16495 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89480 0.16495 -0.01880 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764045 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16501 -0.01887 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767759 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16533 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764829 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16520 -0.01887 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766370 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16522 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764793 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16546 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766020 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16520 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764286 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16517 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766774 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16528 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765796 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16495 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16498 -0.01892 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767473 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89496 0.16490 -0.01868 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89488 0.16493 -0.01880 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767241 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16444 -0.01879 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16444 -0.01885 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767044 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89544 0.16434 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89544 0.16434 -0.01860 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767983 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16388 -0.01871 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16388 -0.01877 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768196 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89607 0.16373 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89591 0.16352 -0.01864 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768299 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16327 -0.01863 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89630 0.16324 -0.01851 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772013 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.2776197 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.32844827 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 8448 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 8346 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 8315 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 8211 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 8154 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 8070 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 8050 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 8046 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 8030 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 8062 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 8066 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 8038 MDRP_FITARCIMAGE: r1: Rejecting line at 8408.2096 Ang MDRP_FITARCIMAGE: r1: Iteration 12 XY2TRACESET: r1: Total rejected = 8071 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 8009 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.02616e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 5.05809e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.12912e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.01369e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.09231e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.15155e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.07488e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.37932e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.07144e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.99046e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 2.01965e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.40026e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.14276e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.65611e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.50369e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.32530e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.86401e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 9.06133e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.37082e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.24826e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.22984e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.37014e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.72031e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.78243e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 8.81880e-07 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 2.98695e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.20461e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.12273e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.46267e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.67200e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 1.89562e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.19640e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.11276e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.68955e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.68299e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.09887e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.18522e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.24968e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 8.18813e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.03741e-05 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 1.02094e-05 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.45727e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 6.75525e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 1.04974e-05 Reject MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.03263e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.10901e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.27352e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.55176e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.05421e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.52042e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.47204e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 1.02684e-05 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.30635e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.69861e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.21116e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 3.24522e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.50731e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 6.11696e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 5.26420e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.44348e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 7.08546e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.17833e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 4.09623e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.16341e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.23870e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 135. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 13416 pixels XY2TRACESET: r1: Total rejected = 2552 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.10 1.08 1.14 1.13 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00190910.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00190909.fit paired with arc sdR-r1-00190910.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 5022 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5170.7478 10369.459 MDRP_SUPERFLAT: r1: Creating superflat from 692 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 711768 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.09766 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7341/57004/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 852. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 853. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0073XX/7341/slitmap-7341-57004-03.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00190909.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.93377 2.10875 2.06188 1.75383 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00190909.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00100 MDRP_CCPEAKS: b2: Traces shifted by -1.80000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.973978 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 713 MDRP_CCPEAKS: b2: Number of Missing Fibers: 1 MDRP_CCPEAKS: b2: Number of missing edge fibers: 1 MDRP_CCPEAKS: b2: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 1 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 420 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 2344 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 419 MDRP_CCTRACEFIBERS: b2: Fiber 419 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00190909.fit XY2TRACESET: b2: Total rejected = 465100 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.97 0.93 1.06 0.98 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 375473 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.97 0.93 1.05 0.98 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00190909.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00190909.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00190910.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.90180 2.09730 2.02056 1.74380 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 4.55982e-05 MDRP_CALIB: b2: Arc sdR-b2-00190910.fit paired with flat sdR-b2-00190909.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 33438 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 408 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 138 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 59 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 24 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 8 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 9 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 34077 MDRP_CALIB: b2: Shifting traces with match_trace 0.0737305 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 16 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.748279 MDRP_FITARCIMAGE: b2: Best correlation = 0.748279 MDRP_FITARCIMAGE: b2: ASET = 3.68760 0.19954 -0.02399 0.00126 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68991 0.19752 -0.02362 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68982 0.19756 -0.02374 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797831 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68953 0.19766 -0.02369 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68943 0.19796 -0.02382 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797765 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68915 0.19819 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68915 0.19819 -0.02395 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.801276 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68895 0.19826 -0.02371 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68886 0.19857 -0.02384 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799336 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68857 0.19880 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68857 0.19880 -0.02396 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.804273 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19887 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68838 0.19887 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.804550 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19893 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68818 0.19920 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.806881 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19940 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19914 -0.02398 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.802286 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19947 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.804639 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19951 -0.02399 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.805967 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.807021 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.803569 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19955 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68751 0.19958 -0.02394 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.802566 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19955 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68751 0.19958 -0.02394 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801758 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19915 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19945 -0.02394 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.802641 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19945 -0.02400 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801224 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19914 -0.02399 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.806707 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19908 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19885 -0.02393 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.804843 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68798 0.19861 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68788 0.19865 -0.02387 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.804965 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68798 0.19860 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68798 0.19860 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.804664 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68817 0.19813 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68817 0.19813 -0.02392 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801061 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68836 0.19807 -0.02373 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68836 0.19781 -0.02379 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799303 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.61883053 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 5026 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 5015 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4992 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 4952 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 4989 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5078 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5074 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5084 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5103 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5153 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5153 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 4.42357e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.13209e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.59989e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.84629e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.12899e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 8.14551e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 3.14124e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 4.93554e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.02559e-05 MDRP_FITARCIMAGE: b2: Line 11 4662.3520 5.82035e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 7.80286e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.16972e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.70968e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 2.07492e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.98089e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 1.91686e-05 Reject MDRP_FITARCIMAGE: b2: Line 18 5400.5616 5.22892e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.16554e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.07396e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.09627e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.08085e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.13119e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.42849e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.58811e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 5.32758e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.17460e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.20962e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.18491e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 8.78830e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.31767e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.30906e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 2.10959e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.08125e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 1.01410e-06 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.27263e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.32086e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.24635e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.28168e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 2.04733e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.73946e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 3.50697e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.42099e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.03818e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 112. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 7588 pixels XY2TRACESET: b2: Total rejected = 1980 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.12 1.09 1.17 1.15 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00190910.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00190909.fit paired with arc sdR-b2-00190910.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3564.2265 6667.7208 MDRP_SUPERFLAT: b2: Creating superflat from 707 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1101706 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.09339 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7341/57004/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 731. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 732. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0073XX/7341/slitmap-7341-57004-03.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00190909.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.84028 2.84707 2.73136 2.85354 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00190909.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00100 MDRP_CCPEAKS: r2: Traces shifted by -1.80000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.97478219 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 708 MDRP_CCPEAKS: r2: Number of Missing Fibers: 6 MDRP_CCPEAKS: r2: Number of missing edge fibers: 2 MDRP_CCPEAKS: r2: Number of missing interior fibers: 4 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 6 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 36 37 38 39 420 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 447 452 456 461 465 2342 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 35 36 37 38 419 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 419 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00190909.fit XY2TRACESET: r2: Total rejected = 71408 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 470 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 1.00 1.01 1.02 1.08 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 42930 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 225 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 1.01 1.01 1.02 1.08 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 4 bright pixels in extracted flat sdR-r2-00190909.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00190909.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00190910.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.85062 2.85505 2.73299 2.87382 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000713908 MDRP_CALIB: r2: Arc sdR-r2-00190910.fit paired with flat sdR-r2-00190909.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 39488 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 688 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 272 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 98 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 46 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 19 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 7 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 9 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 40623 MDRP_CALIB: r2: Shifting traces with match_trace 0.0717773 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 252 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16353 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89792 0.16377 -0.01845 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.774692 MDRP_FITARCIMAGE: r2: Best correlation = 0.774692 MDRP_FITARCIMAGE: r2: ASET = 3.89792 0.16377 -0.01845 0.00120 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89936 0.16140 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89936 0.16140 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764293 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89906 0.16191 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89899 0.16194 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765290 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89876 0.16242 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89884 0.16239 -0.01830 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765286 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89845 0.16253 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89861 0.16274 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764793 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89830 0.16298 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89838 0.16295 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766311 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89814 0.16303 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89822 0.16301 -0.01832 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764940 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16319 -0.01845 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765544 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16349 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767156 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16353 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89792 0.16350 -0.01845 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767076 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16353 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89784 0.16353 -0.01857 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765123 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16354 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89792 0.16378 -0.01833 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764205 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16353 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89792 0.16377 -0.01845 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766097 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16353 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89792 0.16377 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764157 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16349 -0.01851 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766008 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16343 -0.01838 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766448 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16338 -0.01832 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764662 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16293 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89846 0.16319 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766740 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89862 0.16287 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89870 0.16284 -0.01830 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769126 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89892 0.16263 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764298 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89908 0.16231 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89916 0.16228 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767571 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89938 0.16180 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89946 0.16178 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765735 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89970 0.16170 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89970 0.16143 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766341 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.3015857 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.47666678 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 8570 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 8517 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 8467 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 8410 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 8275 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 8185 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 8105 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 8055 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 8074 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 8087 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 8099 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 8123 MDRP_FITARCIMAGE: r2: Rejecting line at 8408.2096 Ang MDRP_FITARCIMAGE: r2: Iteration 12 XY2TRACESET: r2: Total rejected = 8136 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 8081 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.20882e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.61078e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.08350e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.05239e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.17676e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.13853e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.29005e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.19547e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.00558e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.67350e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.83016e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.41991e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.19552e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.45932e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 1.03722e-06 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 9.31415e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.32952e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.87114e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.66583e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 7.95917e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.42959e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.86914e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.47517e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.53190e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 2.20595e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.09218e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.30829e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.58027e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.39900e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.67235e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.70599e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.32246e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.25771e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.61196e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.70201e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.09301e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.15751e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 7.23937e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.65695e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 1.11926e-05 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 1.00856e-05 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.52992e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.39138e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 1.05564e-05 Reject MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.74808e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.09049e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.30349e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.82198e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 1.78801e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.50072e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.36679e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 9.64510e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.34480e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.52182e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.33232e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.72925e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.25089e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 5.41894e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.87157e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.31046e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 5.12510e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.23631e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.57692e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.23312e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.27739e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 138. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 11093 pixels XY2TRACESET: r2: Total rejected = 2545 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.06 1.07 1.15 1.10 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00190910.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00190909.fit paired with arc sdR-r2-00190910.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 3044 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5240.4415 10426.279 MDRP_SUPERFLAT: r2: Creating superflat from 702 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 703652 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.10898 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7341/57004/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 839. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 841. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 3152. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.7 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 3154. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:07:19 2016