MDRP_REDUCE2D: Log file mgDiag2d-7443-56738.log opened Fri Mar 11 13:15:32 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp134 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-7443-56738.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 7443 at Fri Mar 11 13:15:38 2016 MDRP_REDUCE2D: Slitmap file = slitmap-7443-56738-01.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0074XX/7443/slitmap-7443-56738-01.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00177062.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56152-b1.fits.gz SDSSPROC: b1: Read noise = 2.07120 2.01159 1.95357 1.91714 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00177062.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00250 MDRP_CCPEAKS: b1: Traces shifted by -4.70000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.958153 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 708 MDRP_CCPEAKS: b1: Number of Missing Fibers: 1 MDRP_CCPEAKS: b1: Number of missing edge fibers: 1 MDRP_CCPEAKS: b1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 1 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 485 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 2633 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 484 MDRP_CCTRACEFIBERS: b1: Fiber 484 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00177062.fit XY2TRACESET: b1: Total rejected = 501298 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 6 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.90 1.00 1.00 1.03 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 470014 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.90 1.00 1.00 1.03 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00177062.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00177062.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00177063.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56152-b1.fits.gz SDSSPROC: b1: Read noise = 2.04748 1.99007 1.93009 1.89351 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 0.000168440 MDRP_CALIB: b1: Arc sdR-b1-00177063.fit paired with flat sdR-b1-00177062.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 38435 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 700 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 170 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 45 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 7 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 39357 MDRP_CALIB: b1: Shifting traces with match_trace 0.0207520 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 6 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20316 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67843 0.20320 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.736396 MDRP_FITARCIMAGE: b1: Best correlation = 0.736396 MDRP_FITARCIMAGE: b1: ASET = 3.67843 0.20320 -0.02422 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67995 0.20147 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67995 0.20147 -0.02423 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.796166 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67975 0.20155 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67975 0.20181 -0.02424 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.792766 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67955 0.20201 -0.02400 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67945 0.20204 -0.02413 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791574 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67935 0.20208 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67925 0.20238 -0.02419 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.791165 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20255 -0.02401 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67904 0.20258 -0.02414 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787172 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67894 0.20262 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67884 0.20266 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788999 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20283 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790776 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67853 0.20317 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789563 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67843 0.20320 -0.02428 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788794 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67843 0.20320 -0.02428 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787414 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20316 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67843 0.20320 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784332 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67843 0.20320 -0.02428 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785082 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67843 0.20320 -0.02428 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785209 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67853 0.20317 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786730 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67853 0.20317 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787702 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20313 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787169 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20302 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20279 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784540 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20256 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67914 0.20256 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788136 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67934 0.20249 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67924 0.20252 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789888 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67954 0.20242 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67954 0.20215 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791726 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67994 0.20187 -0.02399 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67984 0.20190 -0.02411 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787542 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68015 0.20140 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68015 0.20167 -0.02422 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.788819 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.71233205 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4923 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4868 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4773 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4920 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4942 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 5001 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4998 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 5029 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 5058 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5103 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5103 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 5.81093e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.18288e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 3.01096e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.79687e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.19914e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 8.51942e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 3.17691e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.88708e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.06273e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 7.07449e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.80200e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.99588e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.45831e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 2.00136e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 7.80410e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 18 5400.5616 5.13830e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.25397e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 9.48831e-06 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.03099e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.07729e-05 MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.10560e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.60464e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.64538e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.13572e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.43181e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.39917e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.23356e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.70950e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.49923e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.10069e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 1.00210e-06 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 1.16785e-06 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.20008e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 2.72859e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 4.19379e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 4.17331e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.90116e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.84503e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.57133e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 4.59068e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 5.02645e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 5.57953e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 106. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9032 pixels XY2TRACESET: b1: Total rejected = 1513 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.07 1.11 1.10 1.13 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00177063.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00177062.fit paired with arc sdR-b1-00177063.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 6 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3467.9660 6560.3434 MDRP_SUPERFLAT: b1: Creating superflat from 707 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1058678 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.07254 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56737 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7443/56738/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 734. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 751. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0074XX/7443/slitmap-7443-56738-01.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00177062.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56152-r1.fits.gz SDSSPROC: r1: Read noise = 2.86939 2.63003 2.47602 2.47495 electrons FINDOPFILE: r1: Selecting op file pixflatave-56698-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56698-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56149-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56149-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00177062.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00250 MDRP_CCPEAKS: r1: Traces shifted by -7.50000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97336389 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 708 MDRP_CCPEAKS: r1: Number of Missing Fibers: 1 MDRP_CCPEAKS: r1: Number of missing edge fibers: 1 MDRP_CCPEAKS: r1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 1 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 485 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 2632 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 484 MDRP_CCTRACEFIBERS: r1: Fiber 484 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00177062.fit XY2TRACESET: r1: Total rejected = 68529 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 62 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.98 1.15 1.16 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 57839 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 56 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.98 1.15 1.16 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 0 bright pixels in extracted flat sdR-r1-00177062.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00177062.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00177063.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56152-r1.fits.gz SDSSPROC: r1: Read noise = 2.87264 2.63956 2.48180 2.47170 electrons FINDOPFILE: r1: Selecting op file pixflatave-56698-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56698-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56149-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56149-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.00149747 MDRP_CALIB: r1: Arc sdR-r1-00177063.fit paired with flat sdR-r1-00177062.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 60064 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 933 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 292 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 92 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 34 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 15 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 61433 MDRP_CALIB: r1: Shifting traces with match_trace 0.0170898 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 245 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16579 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16579 -0.01885 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771649 MDRP_FITARCIMAGE: r1: Best correlation = 0.771649 MDRP_FITARCIMAGE: r1: ASET = 3.89351 0.16579 -0.01885 0.00121 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89446 0.16387 -0.01857 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89446 0.16360 -0.01845 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765263 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89430 0.16393 -0.01858 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89422 0.16395 -0.01858 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765628 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89399 0.16443 -0.01859 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89399 0.16443 -0.01859 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766459 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16449 -0.01859 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16475 -0.01865 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766123 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16494 -0.01872 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16494 -0.01872 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766014 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16499 -0.01879 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89359 0.16523 -0.01866 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766054 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01873 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16539 -0.01873 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766116 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16545 -0.01891 0.00117 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766899 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01879 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16571 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765898 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16580 -0.01867 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89343 0.16582 -0.01879 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764373 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16579 -0.01873 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89343 0.16582 -0.01885 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765590 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16579 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16579 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766396 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16574 -0.01872 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89359 0.16577 -0.01884 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764130 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16569 -0.01871 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89375 0.16545 -0.01884 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765297 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16528 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16528 -0.01889 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764950 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16518 -0.01864 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89407 0.16521 -0.01877 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767010 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16512 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89432 0.16512 -0.01882 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767156 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89463 0.16461 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89463 0.16461 -0.01881 0.00117 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767297 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16450 -0.01868 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89495 0.16450 -0.01868 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768001 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89527 0.16400 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89527 0.16400 -0.01866 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770525 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89575 0.16384 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89567 0.16360 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771181 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89606 0.16333 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89614 0.16330 -0.01839 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774272 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.2906698 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.38356836 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7762 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7685 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7603 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7503 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7421 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7329 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7293 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7244 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7272 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7285 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7318 MDRP_FITARCIMAGE: r1: Rejecting line at 8408.2096 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 7327 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 12 XY2TRACESET: r1: Total rejected = 7345 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 7324 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.02699e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 5.37548e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.04254e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.12403e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.19868e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.06269e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.03763e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.74792e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.15824e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 2.65055e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 2.36237e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.41627e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.10935e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.41046e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 8.92439e-07 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 8.65412e-07 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.34052e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.80698e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.07346e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 9.81292e-07 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.27830e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.45231e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.60952e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.69386e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.67151e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 2.88737e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 2.87801e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.02888e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.26908e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 3.20614e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.62091e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.20196e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.28237e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.78297e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.65497e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.18699e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.13710e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 5.96317e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 6.96845e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.10006e-05 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 9.43513e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.13726e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 6.83635e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 9.96923e-06 Reject MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.36391e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.07700e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 4.17377e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 2.69961e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 1.99430e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.89040e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.34092e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 9.29682e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.37135e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.80212e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 5.68107e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 3.61710e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.82363e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.16289e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 5.51580e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.66265e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 5.57030e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 0.00000 Reject-offset MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.08500e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.22179e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.04706e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 132. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 11553 pixels XY2TRACESET: r1: Total rejected = 2205 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.08 1.03 1.13 1.19 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00177063.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00177062.fit paired with arc sdR-r1-00177063.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 111 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5170.7312 10367.180 MDRP_SUPERFLAT: r1: Creating superflat from 708 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 711350 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.07827 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56737 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7443/56738/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 790. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 792. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0074XX/7443/slitmap-7443-56738-01.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00177062.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56170-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.17713 2.16568 2.21321 2.01145 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00177062.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00250 MDRP_CCPEAKS: b2: Traces shifted by -5.20000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.950881 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 710 MDRP_CCPEAKS: b2: Number of Missing Fibers: 4 MDRP_CCPEAKS: b2: Number of missing edge fibers: 2 MDRP_CCPEAKS: b2: Number of missing interior fibers: 2 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 4 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 342 387 417 585 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 1965 2176 2321 3142 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 341 386 416 584 MDRP_CCTRACEFIBERS: b2: Fiber 341 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 386 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 416 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 584 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00177062.fit XY2TRACESET: b2: Total rejected = 463306 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 5 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.97 0.94 1.07 1.01 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 345691 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 5 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.97 0.94 1.07 1.01 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00177062.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00177062.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00177063.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56170-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.13265 2.11685 2.18149 1.99006 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 0.000182987 MDRP_CALIB: b2: Arc sdR-b2-00177063.fit paired with flat sdR-b2-00177062.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 31999 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 468 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 129 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 35 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 6 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 32639 MDRP_CALIB: b2: Shifting traces with match_trace 0.0437012 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 42 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68643 0.19996 -0.02403 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.742443 MDRP_FITARCIMAGE: b2: Best correlation = 0.742443 MDRP_FITARCIMAGE: b2: ASET = 3.68643 0.19996 -0.02403 0.00126 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68894 0.19786 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68894 0.19786 -0.02389 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796554 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19800 -0.02378 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68846 0.19830 -0.02391 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797243 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68818 0.19853 -0.02398 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.798774 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19867 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19894 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795932 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19915 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19918 -0.02394 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797924 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19922 -0.02382 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68731 0.19925 -0.02394 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800932 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19928 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68711 0.19958 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801920 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19965 -0.02402 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.793470 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68672 0.19986 -0.02402 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795135 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68663 0.19989 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68663 0.19989 -0.02402 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796638 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68663 0.19990 -0.02378 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68653 0.19993 -0.02391 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.792563 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68643 0.19996 -0.02403 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796296 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68633 0.20000 -0.02403 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.797320 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68633 0.20000 -0.02403 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798818 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19957 -0.02379 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68633 0.19987 -0.02391 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797726 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19956 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68633 0.19960 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795221 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19956 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68643 0.19956 -0.02403 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.798542 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68662 0.19949 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68652 0.19953 -0.02403 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799239 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68681 0.19903 -0.02378 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68672 0.19906 -0.02390 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799466 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68681 0.19902 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68681 0.19902 -0.02402 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799947 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68700 0.19855 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68700 0.19855 -0.02401 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797335 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68720 0.19848 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68720 0.19822 -0.02395 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794665 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.68530736 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 5474 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 5423 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 5304 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 5469 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5483 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5538 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5573 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5594 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5603 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5637 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5637 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 5.59248e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 2.39410e-05 Reject MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.14472e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.80806e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 2.15037e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.21725e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 8.09287e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 4.02761e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 4.95372e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.09405e-05 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 7.45169e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 7.64271e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.37479e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 4.31591e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 2.17514e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.74665e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 1.89933e-05 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.97593e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.39896e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.03068e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.10413e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.09879e-05 MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.07092e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.87265e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.96219e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 5.16480e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.49657e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.45145e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.22100e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 9.18550e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.60134e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.62623e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 2.19906e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.11399e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 9.87725e-07 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.20856e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.33959e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.52536e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.51516e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.90532e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.68295e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 4.10678e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.62352e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.25228e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 111. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 9271 pixels XY2TRACESET: b2: Total rejected = 1782 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.12 1.10 1.11 1.10 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00177063.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00177062.fit paired with arc sdR-b2-00177063.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 4 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3552.6739 6657.1341 MDRP_SUPERFLAT: b2: Creating superflat from 692 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1098249 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.08661 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56737 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7443/56738/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 704. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 706. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0074XX/7443/slitmap-7443-56738-01.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00177062.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56665-r2.fits.gz SDSSPROC: r2: Read noise = 2.73447 2.79509 2.88647 2.73582 electrons FINDOPFILE: r2: Selecting op file pixflatave-56656-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56656-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56649-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56649-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00177062.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00250 MDRP_CCPEAKS: r2: Traces shifted by -4.30000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.95779633 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 706 MDRP_CCPEAKS: r2: Number of Missing Fibers: 8 MDRP_CCPEAKS: r2: Number of missing edge fibers: 3 MDRP_CCPEAKS: r2: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 8 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 36 37 38 39 387 417 585 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 449 453 458 462 467 2174 2318 3144 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 35 36 37 38 386 416 584 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 386 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 416 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 584 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00177062.fit XY2TRACESET: r2: Total rejected = 78848 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 286 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 1.04 1.04 1.07 1.11 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 42640 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 237 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 1.04 1.04 1.06 1.11 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 20 bright pixels in extracted flat sdR-r2-00177062.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00177062.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00177063.fit SDSSPROC_BADFORMAT: r2: Warning: Serial transient not detected in 8 rows SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56665-r2.fits.gz SDSSPROC: r2: Read noise = 2.72741 2.79784 2.89060 2.72890 electrons FINDOPFILE: r2: Selecting op file pixflatave-56656-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56656-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56649-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56649-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.00332040 MDRP_CALIB: r2: Arc sdR-r2-00177063.fit paired with flat sdR-r2-00177062.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 35406 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 959 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 401 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 159 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 66 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 16 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 9 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 37020 MDRP_CALIB: r2: Shifting traces with match_trace 0.0520020 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 327 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89688 0.16386 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89688 0.16413 -0.01855 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.774237 MDRP_FITARCIMAGE: r2: Best correlation = 0.774237 MDRP_FITARCIMAGE: r2: ASET = 3.89688 0.16413 -0.01855 0.00122 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89858 0.16167 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89850 0.16170 -0.01831 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763557 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89812 0.16223 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89819 0.16221 -0.01832 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765353 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89797 0.16269 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89797 0.16269 -0.01833 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770253 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89749 0.16284 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89765 0.16306 -0.01840 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763716 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89735 0.16330 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89743 0.16327 -0.01841 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765662 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89719 0.16335 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89727 0.16332 -0.01847 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765212 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16375 -0.01848 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89712 0.16352 -0.01854 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763608 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16381 -0.01848 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89704 0.16381 -0.01848 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764962 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89688 0.16385 -0.01867 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89696 0.16382 -0.01855 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765892 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89688 0.16386 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89688 0.16386 -0.01855 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763466 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89688 0.16386 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89688 0.16413 -0.01855 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763370 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89688 0.16386 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89688 0.16413 -0.01855 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764780 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89688 0.16385 -0.01861 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89696 0.16409 -0.01848 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764879 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16381 -0.01848 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89696 0.16384 -0.01860 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765087 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16380 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89712 0.16377 -0.01848 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765273 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16375 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89728 0.16372 -0.01841 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765029 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89735 0.16330 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89743 0.16354 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764312 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89766 0.16319 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89766 0.16319 -0.01840 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768829 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89781 0.16274 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89797 0.16295 -0.01833 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769689 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89813 0.16263 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89821 0.16261 -0.01832 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767119 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89843 0.16213 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89843 0.16213 -0.01831 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765967 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89873 0.16162 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89881 0.16186 -0.01830 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766644 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.3640603 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.47771676 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 9079 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 9022 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 8932 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 8749 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 8669 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 8542 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 8476 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 8422 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 8430 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 8445 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 8442 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 8465 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 8343 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.01614e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.98081e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.17295e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.30132e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.29642e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.08468e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.57766e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.17300e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.17395e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.62533e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.48711e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.07098e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.15677e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.63815e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 1.05670e-06 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 9.48987e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.15176e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.48448e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.55771e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 9.13855e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.45305e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 2.16383e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.55126e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.56236e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 2.66602e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.39281e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.71815e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.60538e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.46230e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.66993e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.76772e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.32627e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.26456e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.44488e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.70624e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.11427e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.13764e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 7.03709e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.42946e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 1.05939e-05 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 9.51651e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.20415e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.39209e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 8.96072e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.62248e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.11177e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 2.94459e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.66759e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 1.92892e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.54259e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.44504e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 9.40305e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.25550e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.24097e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.77269e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.34433e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.15560e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 5.70917e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.57539e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.00877e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.92440e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 8.34878e-06 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.49495e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.10962e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.21828e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 137. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 13402 pixels XY2TRACESET: r2: Total rejected = 2826 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.03 1.02 1.12 1.08 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00177063.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00177062.fit paired with arc sdR-r2-00177063.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 517 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5224.8674 10408.953 MDRP_SUPERFLAT: r2: Creating superflat from 684 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 722005 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.09579 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56737 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7443/56738/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 831. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 832. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 3082. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1483.3 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 3089. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:07:00 2016