MDRP_REDUCE2D: Log file mgDiag2d-7962-57167.log opened Fri Mar 11 13:23:49 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp136 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-7962-57167.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 7962 at Fri Mar 11 13:23:49 2016 MDRP_REDUCE2D: Slitmap file = slitmap-7962-57166-02.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0079XX/7962/slitmap-7962-57166-02.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00200313.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06468 1.97975 1.95752 2.07447 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00200313.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00050 MDRP_CCPEAKS: b1: Traces shifted by -0.900002 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.973946 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 709 MDRP_CCPEAKS: b1: Number of Missing Fibers: 0 MDRP_CCPEAKS: b1: Number of missing edge fibers: 0 MDRP_CCPEAKS: b1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b1: No Missing Fibers. MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00200313.fit XY2TRACESET: b1: Total rejected = 495939 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 11 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.97 1.00 1.10 1.09 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 467186 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.97 1.00 1.10 1.09 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00200313.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00200313.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00200314.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.02728 1.92768 1.92141 1.98699 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 4.77950e-05 MDRP_CALIB: b1: Arc sdR-b1-00200314.fit paired with flat sdR-b1-00200313.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 32032 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 321 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 102 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 35 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 32503 MDRP_CALIB: b1: Shifting traces with match_trace -0.00854492 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 13 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67991 0.20307 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67991 0.20281 -0.02423 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.739043 MDRP_FITARCIMAGE: b1: Best correlation = 0.739043 MDRP_FITARCIMAGE: b1: ASET = 3.67991 0.20281 -0.02423 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68153 0.20091 -0.02400 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68143 0.20094 -0.02412 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794542 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68133 0.20098 -0.02395 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68123 0.20128 -0.02407 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.789796 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68093 0.20152 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68093 0.20152 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.793664 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68073 0.20159 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68063 0.20190 -0.02421 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.791720 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68053 0.20206 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68053 0.20206 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791190 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68053 0.20206 -0.02397 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68043 0.20209 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784235 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.787482 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68012 0.20260 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68012 0.20260 -0.02422 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.786497 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68012 0.20260 -0.02398 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68002 0.20263 -0.02411 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.783522 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68012 0.20260 -0.02404 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68002 0.20264 -0.02417 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785183 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67992 0.20267 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67992 0.20294 -0.02423 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.785349 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67991 0.20307 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67991 0.20281 -0.02423 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785549 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68012 0.20260 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68002 0.20264 -0.02423 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784831 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68012 0.20260 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68002 0.20291 -0.02423 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.783557 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68012 0.20260 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68012 0.20260 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786520 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788966 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.786571 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68063 0.20203 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787158 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02402 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20196 -0.02414 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785641 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68113 0.20145 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68103 0.20176 -0.02420 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.788333 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68132 0.20138 -0.02419 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789766 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68163 0.20114 -0.02418 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.790740 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.76433398 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4716 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4694 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4613 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4816 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4839 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4919 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4915 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 4965 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 4971 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5005 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 10 XY2TRACESET: b1: Total rejected = 5041 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5041 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 5.73711e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.08636e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 2.82286e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 3.02320e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.18777e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 8.36415e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.84991e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.13594e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.08242e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 7.04325e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.56193e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.47411e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.30911e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.92650e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.19318e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.94378e-05 Reject-offset MDRP_FITARCIMAGE: b1: Line 18 5400.5616 4.96219e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.10478e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.04853e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.10034e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.06873e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.09375e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.44877e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.36107e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.23312e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.19128e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.15344e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 9.44192e-07 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.92419e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.39232e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.03927e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 9.11324e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 7.88882e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 9.96504e-07 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.37462e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 2.74251e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 3.77264e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.91942e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.77779e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.42279e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 4.34237e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 3.88304e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 3.82319e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 107. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9060 pixels XY2TRACESET: b1: Total rejected = 861 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.01 1.04 1.07 1.10 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00200314.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00200313.fit paired with arc sdR-b1-00200314.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 13 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3483.2395 6578.0110 MDRP_SUPERFLAT: b1: Creating superflat from 707 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1057070 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.08220 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7962/57167/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 728. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 730. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0079XX/7962/slitmap-7962-57166-02.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00200313.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.80744 3.21958 3.27556 3.19985 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00200313.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00050 MDRP_CCPEAKS: r1: Traces shifted by -0.299995 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97891509 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 703 MDRP_CCPEAKS: r1: Number of Missing Fibers: 6 MDRP_CCPEAKS: r1: Number of missing edge fibers: 0 MDRP_CCPEAKS: r1: Number of missing interior fibers: 6 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 6 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 205 206 230 231 545 563 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 1302 1306 1426 1430 2945 3038 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 204 205 229 230 544 562 MDRP_CCTRACEFIBERS: r1: Fiber 204 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 544 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 562 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00200313.fit XY2TRACESET: r1: Total rejected = 85341 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 3494 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.06 1.00 1.15 1.05 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 49384 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 433 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 1.00 1.15 1.05 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 0 bright pixels in extracted flat sdR-r1-00200313.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00200313.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00200314.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.80760 3.20174 3.26406 3.19735 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000422079 MDRP_CALIB: r1: Arc sdR-r1-00200314.fit paired with flat sdR-r1-00200313.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 64595 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1048 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 379 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 147 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 57 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 34 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 21 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 10 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 66295 MDRP_CALIB: r1: Shifting traces with match_trace -0.00781250 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 398 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16552 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89432 0.16552 -0.01888 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773632 MDRP_FITARCIMAGE: r1: Best correlation = 0.773632 MDRP_FITARCIMAGE: r1: ASET = 3.89432 0.16552 -0.01888 0.00121 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89589 0.16299 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89597 0.16323 -0.01840 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769408 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89558 0.16348 -0.01871 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89566 0.16346 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769898 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89543 0.16395 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89543 0.16395 -0.01854 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769483 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16406 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16432 -0.01861 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768379 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16451 -0.01862 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89487 0.16453 -0.01874 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770551 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89463 0.16461 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89471 0.16485 -0.01886 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767568 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01869 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16504 -0.01881 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764049 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16507 -0.01869 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16509 -0.01882 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768723 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16512 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89432 0.16539 -0.01894 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768509 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16552 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89424 0.16528 -0.01894 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768738 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16552 -0.01876 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89424 0.16555 -0.01888 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766516 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16552 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89424 0.16528 -0.01894 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766636 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16552 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89432 0.16552 -0.01894 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766898 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89432 0.16512 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16536 -0.01887 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769317 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16533 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769285 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16504 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770508 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16496 -0.01862 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16499 -0.01874 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768344 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16450 -0.01880 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89495 0.16450 -0.01886 0.00114 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768694 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89528 0.16440 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89520 0.16443 -0.01873 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770132 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89543 0.16394 -0.01872 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89543 0.16394 -0.01872 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769179 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89575 0.16383 -0.01871 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89575 0.16356 -0.01865 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770043 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89606 0.16333 -0.01858 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89606 0.16333 -0.01858 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772824 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.4067428 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.36876097 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7704 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7678 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7623 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7512 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7426 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7363 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7321 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7310 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7314 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7318 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7336 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 7357 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 7253 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.09702e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.72921e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.29074e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.08609e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.10815e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.07360e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.06736e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.44187e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.16771e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.95400e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 2.06777e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.49213e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.13844e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.76578e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.53173e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.30886e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.34580e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.76182e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.30183e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.09009e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.17479e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.30985e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.76506e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.90276e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 8.54224e-07 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.00569e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.02090e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 2.93114e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.28363e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.43671e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.07679e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.04320e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.02079e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.46019e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.62741e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.12857e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.07844e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 5.94831e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.18146e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.05913e-05 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 9.46643e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.50134e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.02701e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 9.06240e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.31188e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.09876e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.44365e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.58118e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.13752e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.45504e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.36189e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 9.19061e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.25625e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.31556e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.58224e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 3.01727e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.13048e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.02331e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.83403e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.26629e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 7.42970e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.17919e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.71511e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.12583e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.03093e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 130. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 13789 pixels XY2TRACESET: r1: Total rejected = 2593 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.08 1.03 1.06 1.03 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00200314.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00200313.fit paired with arc sdR-r1-00200314.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 5579 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5168.0081 10366.364 MDRP_SUPERFLAT: r1: Creating superflat from 692 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 714216 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.07984 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7962/57167/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 847. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 849. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0079XX/7962/slitmap-7962-57166-02.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00200313.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.93666 2.12775 2.03996 1.76597 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00200313.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00050 MDRP_CCPEAKS: b2: Traces shifted by 0.00000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.973917 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 713 MDRP_CCPEAKS: b2: Number of Missing Fibers: 1 MDRP_CCPEAKS: b2: Number of missing edge fibers: 0 MDRP_CCPEAKS: b2: Number of missing interior fibers: 1 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 1 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 593 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 3188 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 592 MDRP_CCTRACEFIBERS: b2: Fiber 592 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00200313.fit XY2TRACESET: b2: Total rejected = 460133 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 6 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.98 0.95 1.04 0.99 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 363048 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 4 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.98 0.95 1.03 0.98 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00200313.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00200313.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00200314.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.91193 2.09151 2.02796 1.72844 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 8.45468e-05 MDRP_CALIB: b2: Arc sdR-b2-00200314.fit paired with flat sdR-b2-00200313.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 23730 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 289 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 72 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 24 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 7 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 24127 MDRP_CALIB: b2: Shifting traces with match_trace 0.0124512 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 59 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.740895 MDRP_FITARCIMAGE: b2: Best correlation = 0.740895 MDRP_FITARCIMAGE: b2: ASET = 3.68760 0.19954 -0.02399 0.00124 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68991 0.19751 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68982 0.19755 -0.02386 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794586 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68953 0.19765 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68943 0.19795 -0.02394 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796211 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68915 0.19819 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68915 0.19819 -0.02395 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.799843 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68895 0.19826 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68886 0.19856 -0.02396 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.802081 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68857 0.19880 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68857 0.19880 -0.02396 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801214 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19887 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68838 0.19887 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801549 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19887 -0.02373 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68828 0.19891 -0.02385 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799601 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19894 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68809 0.19924 -0.02386 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.788953 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19941 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19944 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799413 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19947 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799597 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.799127 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.797943 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795265 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19928 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795567 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19928 -0.02393 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800858 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19914 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798363 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19908 -0.02375 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19911 -0.02387 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.799301 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19881 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801984 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68798 0.19860 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68798 0.19860 -0.02392 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801925 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19854 -0.02368 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68808 0.19858 -0.02380 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798801 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68836 0.19808 -0.02367 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68827 0.19811 -0.02379 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796481 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68836 0.19807 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68836 0.19780 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796842 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.66258227 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 4859 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 4711 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4745 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 4996 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5071 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5078 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5110 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5123 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5179 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5213 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5213 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 3.18378e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 1.37881e-05 Reject MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.12511e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.29563e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.50055e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.12531e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 7.36648e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.78736e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 5.01802e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.06930e-05 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 6.78576e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 6.79610e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.98842e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.76841e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 1.96819e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 8.19201e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.97715e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.02651e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 9.76696e-06 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.09616e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.09903e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.15462e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.38320e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.29023e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 4.87763e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.14529e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.11692e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 9.23878e-07 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 9.12336e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.04192e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 1.78844e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 1.43139e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 9.01289e-07 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 9.57961e-07 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.13827e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.12808e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 1.94726e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.12347e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.61144e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.56215e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 3.53101e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.17966e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 4.47683e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 115. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 10780 pixels XY2TRACESET: b2: Total rejected = 1039 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.03 0.99 1.07 1.05 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00200314.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00200313.fit paired with arc sdR-b2-00200314.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 4 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3565.0387 6667.6895 MDRP_SUPERFLAT: b2: Creating superflat from 707 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1101977 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.10671 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7962/57167/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 744. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 745. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0079XX/7962/slitmap-7962-57166-02.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00200313.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.87115 2.83669 2.72919 2.92208 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00200313.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-05-57001.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00050 MDRP_CCPEAKS: r2: Traces shifted by 0.500000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.96975630 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 709 MDRP_CCPEAKS: r2: Number of Missing Fibers: 5 MDRP_CCPEAKS: r2: Number of missing edge fibers: 0 MDRP_CCPEAKS: r2: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 5 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 34 36 37 38 593 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 446 455 459 464 3191 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 33 35 36 37 592 MDRP_CCTRACEFIBERS: r2: Fiber 33 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 592 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00200313.fit XY2TRACESET: r2: Total rejected = 71311 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 74 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.98 0.98 1.01 1.07 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 42006 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 31 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.98 0.98 1.01 1.07 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 5 bright pixels in extracted flat sdR-r2-00200313.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00200313.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00200314.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.87015 2.83545 2.73279 2.92002 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000621107 MDRP_CALIB: r2: Arc sdR-r2-00200314.fit paired with flat sdR-r2-00200313.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 52941 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 957 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 420 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 163 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 75 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 22 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 15 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 11 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 9 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 54606 MDRP_CALIB: r2: Shifting traces with match_trace 0.00650024 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 77 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16375 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.776709 MDRP_FITARCIMAGE: r2: Best correlation = 0.776709 MDRP_FITARCIMAGE: r2: ASET = 3.89800 0.16375 -0.01851 0.00122 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89936 0.16140 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89944 0.16138 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764181 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89906 0.16191 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89914 0.16188 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767636 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89892 0.16236 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771966 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89860 0.16247 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89868 0.16271 -0.01830 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767506 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16293 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89846 0.16293 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767571 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89830 0.16298 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89830 0.16298 -0.01838 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767648 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89814 0.16303 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89822 0.16327 -0.01838 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769190 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16346 -0.01845 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767541 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16349 -0.01851 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768603 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89792 0.16351 -0.01857 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765760 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16352 -0.01863 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16374 -0.01851 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765324 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16375 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766130 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16373 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767725 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16346 -0.01851 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767133 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16342 -0.01856 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89823 0.16339 -0.01844 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769590 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16337 -0.01856 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89839 0.16334 -0.01843 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766382 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16292 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89854 0.16316 -0.01837 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766318 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89878 0.16282 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89878 0.16282 -0.01830 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769162 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89908 0.16257 -0.01835 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766884 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89924 0.16226 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89932 0.16223 -0.01828 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768116 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89954 0.16175 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766811 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89985 0.16164 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89978 0.16140 -0.01826 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765285 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.3474165 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.45172220 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 7884 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 7856 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7767 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7691 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7581 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7491 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7432 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7375 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7395 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7396 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7413 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 7440 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 7328 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.22503e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.34357e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.23487e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.11498e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.11029e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.18291e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.40004e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.30043e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.19432e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.24525e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.31540e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.33457e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.16043e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.47672e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 9.81817e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 9.12822e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.49827e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.95390e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.93007e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 6.93685e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.55956e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.91173e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.35175e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.28725e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.73037e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.00857e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.26590e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.44026e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.36271e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.56757e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.83208e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.25222e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.17674e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.35576e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.44402e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.08145e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.05507e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.71862e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.06259e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 1.05284e-05 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 9.37826e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.48901e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.59589e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 9.18090e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.80571e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.12308e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.65834e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.92625e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.11097e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.52694e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.50971e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 9.25476e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.10312e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.36634e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.21982e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.47164e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 2.96483e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 4.88890e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.33048e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.04871e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.58636e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.14418e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.29204e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.18186e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.32539e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 134. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 13577 pixels XY2TRACESET: r2: Total rejected = 2852 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.00 1.03 1.03 1.01 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00200314.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00200313.fit paired with arc sdR-r2-00200314.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 85 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5242.3666 10428.186 MDRP_SUPERFLAT: r2: Creating superflat from 701 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 704309 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.10026 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart05/57004 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/7962/57167/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 788. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 790. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 3114. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.7 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 3115. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:15:44 2016