MDRP_REDUCE2D: Log file mgDiag2d-8143-57023.log opened Fri Mar 11 13:20:39 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp137 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8143-57023.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8143 at Fri Mar 11 13:20:46 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8143-57021-50.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0081XX/8143/slitmap-8143-57021-50.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00192139.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.04323 1.96487 1.90563 1.89139 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00192139.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-04-56891.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 0.998001 MDRP_CCPEAKS: b1: Traces shifted by 4.80000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.976134 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 708 MDRP_CCPEAKS: b1: Number of Missing Fibers: 1 MDRP_CCPEAKS: b1: Number of missing edge fibers: 1 MDRP_CCPEAKS: b1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 1 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 55 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 571 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 54 MDRP_CCTRACEFIBERS: b1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00192139.fit XY2TRACESET: b1: Total rejected = 504741 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 7 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.05 1.05 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 489419 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 14 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.05 1.05 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00192139.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00192139.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00192140.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.02321 1.92055 1.89036 1.84944 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 4.10859e-05 MDRP_CALIB: b1: Arc sdR-b1-00192140.fit paired with flat sdR-b1-00192139.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 34753 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 638 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 157 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 47 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 35609 MDRP_CALIB: b1: Shifting traces with match_trace 0.0236816 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68011 0.20300 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68011 0.20274 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.738551 MDRP_FITARCIMAGE: b1: Best correlation = 0.738551 MDRP_FITARCIMAGE: b1: ASET = 3.68011 0.20274 -0.02422 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68172 0.20084 -0.02412 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794959 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20131 -0.02400 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68142 0.20134 -0.02412 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.790051 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68113 0.20145 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68113 0.20145 -0.02419 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.793889 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68092 0.20166 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790504 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68072 0.20199 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792019 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20220 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792464 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.790547 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790084 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02398 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20256 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.782354 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68011 0.20300 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68011 0.20274 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787815 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68011 0.20300 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68011 0.20274 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786258 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68011 0.20300 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68011 0.20274 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786323 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68011 0.20300 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68011 0.20274 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786091 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02398 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20283 -0.02410 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.781531 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788421 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791237 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20246 -0.02421 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.788219 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02396 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20222 -0.02408 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.785485 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68092 0.20192 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789219 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68112 0.20185 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68122 0.20155 -0.02419 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790005 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20131 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68142 0.20135 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790855 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20124 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68182 0.20094 -0.02411 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790604 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.72171678 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4634 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4507 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4525 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4818 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4836 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4846 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4869 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 4955 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 4985 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5033 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5033 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 3.10018e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.12203e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 1.46749e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 1.76236e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.16566e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 7.61010e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.81420e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.65971e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.08777e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 6.93121e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.91466e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.21050e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.51439e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.93822e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 7.80781e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 18 5400.5616 4.74369e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 1.98602e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.02218e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.14440e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.07222e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.08542e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.40725e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.95188e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.01187e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.13471e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.12152e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.28058e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.31587e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.37931e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.05296e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 8.53098e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 7.74594e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.04550e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.36142e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 1.52231e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 2.30587e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.60169e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.86466e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.56097e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 5.09517e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 1.01842e-05 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 4.04734e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 107. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9330 pixels XY2TRACESET: b1: Total rejected = 785 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.01 1.04 1.08 1.10 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00192140.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00192139.fit paired with arc sdR-b1-00192140.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 18 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3484.5376 6580.2589 MDRP_SUPERFLAT: b1: Creating superflat from 707 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1055461 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.07529 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart04/56899 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8143/57023/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 746. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 764. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0081XX/8143/slitmap-8143-57021-50.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00192139.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.86456 3.38218 3.58810 3.43564 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00192139.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-04-56891.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 0.998001 MDRP_CCPEAKS: r1: Traces shifted by 4.30000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97810420 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 703 MDRP_CCPEAKS: r1: Number of Missing Fibers: 6 MDRP_CCPEAKS: r1: Number of missing edge fibers: 1 MDRP_CCPEAKS: r1: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 6 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 55 206 230 231 545 564 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 565 1304 1424 1428 2943 3039 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 54 205 229 230 544 563 MDRP_CCTRACEFIBERS: r1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 544 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 563 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00192139.fit XY2TRACESET: r1: Total rejected = 84148 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 201 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.06 0.98 1.17 1.08 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 53704 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 145 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.06 0.98 1.18 1.08 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 17 bright pixels in extracted flat sdR-r1-00192139.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00192139.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00192140.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.85782 3.38651 3.59221 3.44096 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000372087 MDRP_CALIB: r1: Arc sdR-r1-00192140.fit paired with flat sdR-r1-00192139.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 68010 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1200 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 425 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 160 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 79 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 31 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 9 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 69918 MDRP_CALIB: r1: Shifting traces with match_trace 0.0234375 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 24 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16549 -0.01894 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.776732 MDRP_FITARCIMAGE: r1: Best correlation = 0.776732 MDRP_FITARCIMAGE: r1: ASET = 3.89440 0.16549 -0.01894 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16328 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89614 0.16304 -0.01851 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769394 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89590 0.16339 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89590 0.16339 -0.01852 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774324 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16389 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16389 -0.01859 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771347 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89527 0.16399 -0.01872 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89535 0.16423 -0.01860 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771206 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16445 -0.01867 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16445 -0.01873 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770011 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89479 0.16455 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89487 0.16479 -0.01886 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768944 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16496 -0.01868 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16499 -0.01880 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772079 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16504 -0.01887 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770231 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16533 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768717 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16522 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769270 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16547 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16549 -0.01888 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768684 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16549 -0.01894 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769833 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16546 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769257 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16520 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769508 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16528 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770417 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16496 -0.01874 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16498 -0.01886 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770953 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89496 0.16490 -0.01880 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89496 0.16490 -0.01874 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771159 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16444 -0.01879 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16444 -0.01885 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768527 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89544 0.16435 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89536 0.16437 -0.01866 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773595 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16389 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16389 -0.01865 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770557 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89591 0.16378 -0.01858 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89591 0.16378 -0.01852 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772995 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16328 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89622 0.16328 -0.01851 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773635 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.3682460 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.32046551 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7325 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7264 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7179 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7072 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7031 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 6932 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 6884 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 6871 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 6882 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 6871 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 6920 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 6928 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 6777 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.17852e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.73710e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.06705e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.11691e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.17640e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.06788e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.29367e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.41495e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.15447e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.91639e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.89782e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.52417e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.04658e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 2.11056e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.65594e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.47340e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.24032e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.94249e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.45941e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.21293e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.27432e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.34247e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.68256e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.86440e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.03782e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.03612e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.12301e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.27131e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.39816e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.68325e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.05604e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.01739e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 9.16458e-07 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.78885e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.76404e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.07737e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.04990e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.15963e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.84780e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 9.67428e-06 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 8.35798e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.43301e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 6.91978e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 8.71754e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.46956e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.05248e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.60370e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.48921e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.24385e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.48566e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.23797e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 9.09310e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.16956e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.53906e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.60017e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 3.02934e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.48168e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.33600e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 5.05568e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.13034e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 7.38143e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.27960e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.40170e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.13436e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 9.88271e-07 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 132. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 14634 pixels XY2TRACESET: r1: Total rejected = 2224 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.08 1.04 1.08 1.04 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00192140.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00192139.fit paired with arc sdR-r1-00192140.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 230 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5170.1659 10369.094 MDRP_SUPERFLAT: r1: Creating superflat from 693 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 716384 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.06760 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart04/56899 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8143/57023/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 833. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 835. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0081XX/8143/slitmap-8143-57021-50.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00192139.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.02676 2.17353 2.01925 1.82635 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00192139.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-04-56891.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 0.997501 MDRP_CCPEAKS: b2: Traces shifted by 5.20000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.954406 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 709 MDRP_CCPEAKS: b2: Number of Missing Fibers: 5 MDRP_CCPEAKS: b2: Number of missing edge fibers: 2 MDRP_CCPEAKS: b2: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 5 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 258 314 343 514 599 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 1554 1825 1966 2798 3213 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 257 313 342 513 598 MDRP_CCTRACEFIBERS: b2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 313 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 342 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 513 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 598 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00192139.fit XY2TRACESET: b2: Total rejected = 469862 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1917 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.95 0.93 1.03 1.00 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 375411 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1502 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.95 0.93 1.03 1.00 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 174 bright pixels in extracted flat sdR-b2-00192139.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00192139.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00192140.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.96946 2.11693 2.00224 1.80842 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 7.19597e-05 MDRP_CALIB: b2: Arc sdR-b2-00192140.fit paired with flat sdR-b2-00192139.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 26682 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 396 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 90 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 32 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 10 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 8 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 27222 MDRP_CALIB: b2: Shifting traces with match_trace 0.0227051 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 190 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19968 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19968 -0.02401 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.742510 MDRP_FITARCIMAGE: b2: Best correlation = 0.742510 MDRP_FITARCIMAGE: b2: ASET = 3.68721 0.19968 -0.02401 0.00122 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68933 0.19772 -0.02382 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68933 0.19772 -0.02394 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794833 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68895 0.19826 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68895 0.19799 -0.02389 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.792600 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68876 0.19833 -0.02372 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68866 0.19837 -0.02384 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795209 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19887 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68838 0.19860 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796594 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19893 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68809 0.19897 -0.02398 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.799935 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19901 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68789 0.19904 -0.02393 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800766 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19934 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.804776 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19928 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794789 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68741 0.19961 -0.02388 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68741 0.19961 -0.02400 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.800658 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68741 0.19961 -0.02388 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68731 0.19965 -0.02400 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.801321 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19968 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19968 -0.02401 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801649 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19968 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02401 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798879 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19969 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02395 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.796887 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19969 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02395 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.797870 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19969 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02395 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797204 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19928 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19955 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.800168 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19928 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19928 -0.02395 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799883 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19921 -0.02388 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68740 0.19921 -0.02400 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799105 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68759 0.19874 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68749 0.19905 -0.02400 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797255 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68759 0.19874 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68759 0.19874 -0.02399 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.800480 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68797 0.19821 -0.02368 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68788 0.19825 -0.02381 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794722 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68817 0.19814 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68807 0.19818 -0.02386 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796159 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.65099182 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 4803 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 4770 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4658 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 4669 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5004 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5028 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5048 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5159 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5210 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5229 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 10 XY2TRACESET: b2: Total rejected = 5260 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5260 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 7.03040e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.13033e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.39260e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.47661e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.19839e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 6.75068e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.77049e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 5.82875e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.08816e-05 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 7.06892e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 8.06556e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.60439e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.82895e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 2.24552e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.91179e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.82897e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.88383e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.01535e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.07777e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.08870e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.03975e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.34147e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.99900e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 5.62775e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.82358e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.65573e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 2.16819e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 9.37182e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 3.84887e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 3.82691e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 2.80205e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.64519e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 9.56680e-07 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.24052e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 2.15213e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.99304e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 3.39464e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.89199e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.73726e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 4.05073e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.83700e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.77662e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 115. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 11166 pixels XY2TRACESET: b2: Total rejected = 1082 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.04 1.03 1.09 1.06 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00192140.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00192139.fit paired with arc sdR-b2-00192140.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 3544 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3560.0000 6663.4007 MDRP_SUPERFLAT: b2: Creating superflat from 703 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1104769 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.09271 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart04/56899 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8143/57023/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 786. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 787. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0081XX/8143/slitmap-8143-57021-50.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00192139.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.73824 2.84367 2.69740 2.73295 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00192139.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-04-56891.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 0.997501 MDRP_CCPEAKS: r2: Traces shifted by 5.20000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.95717560 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 706 MDRP_CCPEAKS: r2: Number of Missing Fibers: 8 MDRP_CCPEAKS: r2: Number of missing edge fibers: 3 MDRP_CCPEAKS: r2: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 8 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 36 37 38 39 258 514 599 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 448 452 457 461 466 1550 2799 3215 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 35 36 37 38 257 513 598 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 513 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 598 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00192139.fit XY2TRACESET: r2: Total rejected = 74625 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 1346 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.99 1.02 1.07 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 39800 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 441 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.98 1.02 1.07 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 351 bright pixels in extracted flat sdR-r2-00192139.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00192139.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00192140.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.74624 2.85353 2.69943 2.73543 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.00133195 MDRP_CALIB: r2: Arc sdR-r2-00192140.fit paired with flat sdR-r2-00192139.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 54923 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 916 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 396 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 158 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 78 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 26 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 13 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 56516 MDRP_CALIB: r2: Shifting traces with match_trace 0.0239258 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 482 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89753 0.16403 -0.01865 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89753 0.16376 -0.01853 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.778510 MDRP_FITARCIMAGE: r2: Best correlation = 0.778510 MDRP_FITARCIMAGE: r2: ASET = 3.89753 0.16376 -0.01853 0.00114 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89889 0.16156 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89897 0.16154 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768557 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89859 0.16207 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89859 0.16207 -0.01831 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771713 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89845 0.16253 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89837 0.16255 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.773159 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89813 0.16263 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89821 0.16287 -0.01832 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768533 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89798 0.16309 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89798 0.16309 -0.01833 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772869 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89782 0.16314 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89782 0.16341 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766024 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16354 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89776 0.16330 -0.01840 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766507 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89768 0.16359 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89768 0.16359 -0.01840 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769582 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89752 0.16365 -0.01853 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769005 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89752 0.16391 -0.01853 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766392 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89753 0.16404 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89753 0.16378 -0.01847 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768321 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89752 0.16391 -0.01853 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768556 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16364 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89760 0.16388 -0.01846 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769810 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89768 0.16359 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89768 0.16386 -0.01846 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767465 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16354 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89776 0.16357 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770348 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16349 -0.01839 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769231 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89798 0.16309 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89806 0.16333 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771696 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16293 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89838 0.16295 -0.01837 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769641 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89860 0.16247 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89868 0.16271 -0.01830 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770851 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89884 0.16239 -0.01830 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770113 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89906 0.16191 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89922 0.16212 -0.01828 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767845 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89954 0.16148 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766025 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.3526569 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.39770471 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 7967 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 7826 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7751 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7708 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7580 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7469 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7412 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7331 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7360 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7380 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7375 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 7408 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 7249 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.10926e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.26959e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.15490e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.16637e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.04594e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.25961e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.32045e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.22915e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.21270e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.05189e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.38348e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.66578e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.14398e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 2.01019e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 1.19884e-06 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 1.18776e-06 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.74666e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.72997e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 1.02425e-06 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 7.54012e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.56072e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.90613e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.29677e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.45223e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 2.11279e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.22083e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.45797e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.47683e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.56408e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.92502e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.82644e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.26182e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.23251e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.61428e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.71924e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.08494e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.07382e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 7.05673e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.61595e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 9.45247e-06 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 8.44039e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.30194e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.31542e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 8.42968e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.56967e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.10064e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.11008e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.74024e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.39220e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.46343e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.32891e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 9.20781e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.21972e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.25252e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.54795e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.51073e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.00458e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 5.05020e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.73144e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 2.98704e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.49752e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 9.88373e-06 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.36289e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.15844e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.18782e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 140. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 13071 pixels XY2TRACESET: r2: Total rejected = 2465 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.00 1.04 1.03 1.02 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00192140.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00192139.fit paired with arc sdR-r2-00192140.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 6874 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5236.7239 10422.903 MDRP_SUPERFLAT: r2: Creating superflat from 699 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 712581 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.09051 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart04/56899 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8143/57023/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 870. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 871. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 3258. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.8 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 3267. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:15:04 2016