MDRP_REDUCE2D: Log file mgDiag2d-8315-57180.log opened Fri Mar 11 21:50:43 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp121 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8315-57180.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8315 at Fri Mar 11 21:50:44 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8315-57180-01.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8315/slitmap-8315-57180-01.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00200838.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06319 1.96313 1.89114 1.89246 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00200838.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-57179.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00000 MDRP_CCPEAKS: b1: Traces shifted by 0.00000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.982793 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 707 MDRP_CCPEAKS: b1: Number of Missing Fibers: 2 MDRP_CCPEAKS: b1: Number of missing edge fibers: 0 MDRP_CCPEAKS: b1: Number of missing interior fibers: 2 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 2 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 59 518 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 591 2822 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 58 517 MDRP_CCTRACEFIBERS: b1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00200838.fit XY2TRACESET: b1: Total rejected = 507135 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 10 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.97 0.98 1.13 1.07 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 466934 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 12 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.97 0.98 1.13 1.07 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00200838.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00200838.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00200839.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.03923 1.91957 1.85273 1.87011 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 3.39612e-05 MDRP_CALIB: b1: Arc sdR-b1-00200839.fit paired with flat sdR-b1-00200838.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 30685 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 404 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 106 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 21 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 31221 MDRP_CALIB: b1: Shifting traces with match_trace -0.0344238 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 14 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02398 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20256 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.735154 MDRP_FITARCIMAGE: b1: Best correlation = 0.735154 MDRP_FITARCIMAGE: b1: ASET = 3.68022 0.20256 -0.02410 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68172 0.20084 -0.02412 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.794529 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68153 0.20091 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68153 0.20091 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790845 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02401 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68123 0.20142 -0.02413 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.790826 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68113 0.20144 -0.02389 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68103 0.20148 -0.02402 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785802 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68072 0.20199 -0.02421 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.790599 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68063 0.20203 -0.02415 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787178 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20220 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785159 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.787303 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787482 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787866 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787393 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02398 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20256 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.782249 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785795 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785906 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786981 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02416 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.785317 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68063 0.20229 -0.02415 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.786103 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02396 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20195 -0.02408 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786454 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68092 0.20192 -0.02420 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.789066 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02395 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68123 0.20141 -0.02407 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787389 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20131 -0.02400 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68142 0.20134 -0.02412 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.787650 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68172 0.20084 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789793 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.68990371 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4917 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4917 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4727 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4713 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4734 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4793 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4800 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 4838 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 4861 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 4882 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 4882 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 8.20909e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.09528e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 3.66902e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 3.48368e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.17360e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 8.82536e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.93550e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 3.57658e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.02475e-05 MDRP_FITARCIMAGE: b1: Line 11 4662.3520 5.43166e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.34010e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.67999e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.39019e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.82078e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.04955e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.63205e-05 Reject MDRP_FITARCIMAGE: b1: Line 18 5400.5616 5.11903e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.03200e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.04992e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.08020e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.05307e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.08649e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.39839e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.30659e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.65259e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.77386e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.70537e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.80821e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.94301e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 2.30460e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.28787e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 1.11864e-06 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 8.05298e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 9.60062e-07 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 3.09233e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 5.49418e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 6.00524e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 3.21952e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 2.01873e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.44211e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 3.33121e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 1.00157e-05 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 8.18838e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 96. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8547 pixels XY2TRACESET: b1: Total rejected = 2023 MDRP_FITDISPERSION: b1: Median wavelength widths = 0.99 1.02 1.08 1.10 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00200839.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00200838.fit paired with arc sdR-b1-00200839.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 14 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3485.7665 6577.7431 MDRP_SUPERFLAT: b1: Creating superflat from 704 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1060416 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.08094 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8315/57180/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 601. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 602. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8315/slitmap-8315-57180-01.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00200838.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.92099 3.11075 3.22729 3.30945 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00200838.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-57179.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00000 MDRP_CCPEAKS: r1: Traces shifted by 0.00000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.98001969 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 702 MDRP_CCPEAKS: r1: Number of Missing Fibers: 7 MDRP_CCPEAKS: r1: Number of missing edge fibers: 0 MDRP_CCPEAKS: r1: Number of missing interior fibers: 7 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 7 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 59 205 229 230 518 543 562 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 587 1305 1424 1429 2830 2942 3039 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 58 204 228 229 517 542 561 MDRP_CCTRACEFIBERS: r1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 204 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 228 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 542 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 561 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00200838.fit XY2TRACESET: r1: Total rejected = 64718 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 92 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 1.02 1.11 1.05 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 43801 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 66 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 1.02 1.10 1.05 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 7 bright pixels in extracted flat sdR-r1-00200838.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00200838.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00200839.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.93017 3.11724 3.22380 3.31203 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000493976 MDRP_CALIB: r1: Arc sdR-r1-00200839.fit paired with flat sdR-r1-00200838.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 54835 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 952 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 323 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 104 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 37 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 19 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 56274 MDRP_CALIB: r1: Shifting traces with match_trace -0.0539551 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 174 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16522 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771469 MDRP_FITARCIMAGE: r1: Best correlation = 0.771469 MDRP_FITARCIMAGE: r1: ASET = 3.89440 0.16522 -0.01893 0.00115 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89605 0.16293 -0.01858 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89613 0.16317 -0.01845 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.763519 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89590 0.16339 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89590 0.16339 -0.01852 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769544 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16388 -0.01871 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16362 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764567 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89527 0.16399 -0.01872 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89527 0.16399 -0.01878 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766023 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16445 -0.01873 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16445 -0.01873 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766869 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16450 -0.01868 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89487 0.16453 -0.01880 0.00116 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765298 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16495 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89480 0.16495 -0.01880 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764325 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16501 -0.01881 0.00117 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766203 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16506 -0.01893 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765849 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16533 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766358 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16522 -0.01894 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765408 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16522 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766521 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16533 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767621 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16530 -0.01881 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764824 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16504 -0.01887 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766666 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16496 -0.01868 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16499 -0.01880 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768356 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89496 0.16490 -0.01874 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89488 0.16466 -0.01886 0.00114 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767668 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16445 -0.01873 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16445 -0.01879 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768429 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89544 0.16435 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89536 0.16437 -0.01866 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.764538 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16389 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16389 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769228 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89574 0.16343 -0.01871 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89582 0.16367 -0.01864 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768189 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16328 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89614 0.16330 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770726 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 36, at 7514.6518 Ang: RMS= 0.20405781 pix MDRP_FITARCIMAGE: r1: Discarding line 45, at 8521.4422 Ang: RMS= 0.20009796 pix MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.2076191 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.33392933 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 61 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 8891 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 8820 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 8773 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 8670 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 8617 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 8474 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 8441 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 8434 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 8434 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 8434 MDRP_FITARCIMAGE: r1: Rejecting line at 8408.2096 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 8425 MDRP_FITARCIMAGE: r1: Rejecting line at 9122.9674 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 8442 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 8401 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.03805e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.78694e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.02777e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.06025e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.09033e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.09242e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.35711e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.48202e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.10886e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 2.39728e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.97019e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.24717e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.12354e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.40161e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.08374e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.04507e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 6.85484e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.86306e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.51863e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.18186e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.05719e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.38403e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.72227e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.88075e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.02374e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 2.81184e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.11114e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 2.81936e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 2.88841e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.33574e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 1.73736e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.13768e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.14382e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.77904e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.92126e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.16417e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.11226e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.30235e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 9.30973e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.09120e-05 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 1.05497e-05 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.89064e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.27998e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 1.05270e-05 Reject MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.56132e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.19509e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.78264e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.52657e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.28335e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.21496e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.14482e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 1.01724e-05 Reject MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.00608e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.26223e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 5.36184e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 2.53361e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.11563e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.36526e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.60736e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 2.97125e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 6.58927e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.16543e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.28988e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.16865e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 9.29057e-07 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 116. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 11675 pixels XY2TRACESET: r1: Total rejected = 2127 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.07 1.04 1.06 1.00 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00200839.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00200838.fit paired with arc sdR-r1-00200839.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 425 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5170.9676 10366.515 MDRP_SUPERFLAT: r1: Creating superflat from 688 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 721213 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.07314 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8315/57180/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 678. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 679. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8315/slitmap-8315-57180-01.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00200838.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.12608 2.16466 2.04042 1.81685 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00200838.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-57179.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00000 MDRP_CCPEAKS: b2: Traces shifted by 0.00000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.978188 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 710 MDRP_CCPEAKS: b2: Number of Missing Fibers: 4 MDRP_CCPEAKS: b2: Number of missing edge fibers: 3 MDRP_CCPEAKS: b2: Number of missing interior fibers: 1 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 4 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 1 258 343 515 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 302 1552 1965 2815 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 0 257 342 514 MDRP_CCTRACEFIBERS: b2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 342 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00200838.fit XY2TRACESET: b2: Total rejected = 453146 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.97 0.96 1.01 0.99 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 369175 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.97 0.96 1.01 0.99 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00200838.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00200838.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00200839.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.08514 2.04659 2.01737 1.82005 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 0.000102240 MDRP_CALIB: b2: Arc sdR-b2-00200839.fit paired with flat sdR-b2-00200838.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 23678 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 233 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 67 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 9 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 23988 MDRP_CALIB: b2: Shifting traces with match_trace -0.0234375 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 5 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19934 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68809 0.19937 -0.02392 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.741907 MDRP_FITARCIMAGE: b2: Best correlation = 0.741907 MDRP_FITARCIMAGE: b2: ASET = 3.68809 0.19937 -0.02392 0.00128 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.69049 0.19730 -0.02378 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.69049 0.19703 -0.02378 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795640 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.69011 0.19744 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.69011 0.19744 -0.02380 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.792578 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68973 0.19798 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68973 0.19798 -0.02387 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801534 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68953 0.19806 -0.02369 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68944 0.19809 -0.02382 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.802664 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68916 0.19859 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68916 0.19832 -0.02395 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.804116 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68896 0.19866 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68896 0.19866 -0.02389 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798268 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68877 0.19873 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68877 0.19873 -0.02396 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.803461 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68857 0.19880 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68857 0.19880 -0.02396 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795194 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19927 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68838 0.19900 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800176 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68839 0.19927 -0.02373 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68829 0.19904 -0.02385 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796251 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19933 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68809 0.19937 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.800183 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19934 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68809 0.19911 -0.02386 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797220 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19940 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19914 -0.02398 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794544 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19940 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19914 -0.02398 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800543 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19900 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19900 -0.02398 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799983 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19900 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19900 -0.02398 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.800334 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19900 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19900 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.800632 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68808 0.19884 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801024 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68818 0.19853 -0.02398 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.800422 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68837 0.19847 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68837 0.19820 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.805289 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19800 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68856 0.19800 -0.02390 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.803179 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68875 0.19793 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68875 0.19766 -0.02396 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.803293 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.69335594 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 4809 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 4768 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4780 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 4767 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 4783 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 4831 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 4854 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 4886 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 4909 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 4943 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 4943 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 5.34995e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.15346e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 2.32889e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 2.76334e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.10380e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 9.49952e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.85626e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 3.15314e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 9.79810e-06 MDRP_FITARCIMAGE: b2: Line 11 4662.3520 5.31619e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 5.22186e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.14817e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.74966e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 1.87814e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.77506e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 1.59474e-05 Reject MDRP_FITARCIMAGE: b2: Line 18 5400.5616 5.04847e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 1.98091e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.03260e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.05699e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.16381e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.09149e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.38186e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.29246e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 5.06641e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.12883e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.15128e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.14719e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 8.76929e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 1.54637e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 1.29320e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 1.25861e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 8.27004e-07 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 9.77597e-07 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.43681e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 2.44620e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 4.21141e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 4.61459e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.87799e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.81294e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 2.94169e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.10970e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 4.66108e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 97. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 10091 pixels XY2TRACESET: b2: Total rejected = 2128 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.00 0.99 1.08 1.06 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00200839.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00200838.fit paired with arc sdR-b2-00200839.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3567.3909 6673.3340 MDRP_SUPERFLAT: b2: Creating superflat from 705 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1108639 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.11430 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8315/57180/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 619. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 621. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8315/slitmap-8315-57180-01.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00200838.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.64647 2.79711 2.72525 2.72631 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00200838.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-57179.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00000 MDRP_CCPEAKS: r2: Traces shifted by 0.00000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.97583389 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 707 MDRP_CCPEAKS: r2: Number of Missing Fibers: 7 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 7 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 1 36 37 38 39 258 515 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 287 447 452 456 461 1548 2815 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 0 35 36 37 38 257 514 MDRP_CCTRACEFIBERS: r2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00200838.fit XY2TRACESET: r2: Total rejected = 63802 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 96 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.98 1.03 1.07 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 35712 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 79 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.98 1.03 1.07 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 10 bright pixels in extracted flat sdR-r2-00200838.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00200838.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00200839.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.66084 2.79072 2.72774 2.72441 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000677988 MDRP_CALIB: r2: Arc sdR-r2-00200839.fit paired with flat sdR-r2-00200838.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 44015 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 957 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 320 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 103 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 41 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 17 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 5 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 9 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 45465 MDRP_CALIB: r2: Shifting traces with match_trace -0.0338135 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 160 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16337 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16337 -0.01850 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772666 MDRP_FITARCIMAGE: r2: Best correlation = 0.772666 MDRP_FITARCIMAGE: r2: ASET = 3.89831 0.16337 -0.01850 0.00114 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89984 0.16124 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 192 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89992 0.16122 -0.01826 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.761413 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89962 0.16172 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763787 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89922 0.16186 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89930 0.16210 -0.01828 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765558 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89908 0.16231 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89908 0.16231 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763667 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89894 0.16276 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89894 0.16276 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763241 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89862 0.16287 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89870 0.16284 -0.01836 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766384 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89862 0.16287 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89862 0.16314 -0.01837 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764577 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89847 0.16333 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89855 0.16330 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.762837 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89847 0.16333 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89839 0.16335 -0.01843 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765074 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16337 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16337 -0.01850 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763899 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89824 0.16341 -0.01850 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763667 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16338 -0.01844 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764617 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16338 -0.01844 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764701 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89847 0.16333 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89847 0.16333 -0.01843 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765539 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89847 0.16331 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89855 0.16329 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765483 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89863 0.16327 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89863 0.16300 -0.01837 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764224 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89878 0.16282 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89878 0.16282 -0.01842 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766058 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89910 0.16271 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89902 0.16274 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763577 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89924 0.16226 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89924 0.16226 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763436 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89956 0.16215 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89956 0.16215 -0.01827 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765141 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89985 0.16164 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89978 0.16167 -0.01826 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764400 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89999 0.16119 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 192 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.90015 0.16140 -0.01825 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.761925 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 35, at 7503.8691 Ang: RMS= 0.22321051 pix MDRP_FITARCIMAGE: r2: Discarding line 36, at 7514.6518 Ang: RMS= 0.22751170 pix MDRP_FITARCIMAGE: r2: Discarding line 45, at 8521.4422 Ang: RMS= 0.22055576 pix MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.1577997 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.37773569 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 60 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 8871 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 8768 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 8673 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 8601 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 8531 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 8455 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 8375 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 8321 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 8312 MDRP_FITARCIMAGE: r2: Rejecting line at 8408.2096 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 8300 MDRP_FITARCIMAGE: r2: Rejecting line at 8103.6930 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 8370 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 8326 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.21009e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.35581e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.06802e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.05283e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.15753e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.53187e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.52074e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.09325e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.23043e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.56692e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.37893e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.09667e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.15812e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.40015e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 8.81483e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 7.73491e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 6.99269e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.50950e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 1.00790e-06 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 6.60115e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.38595e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.73457e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.41987e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.27184e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.85468e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 2.83021e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 2.89513e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.04395e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.13721e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.35857e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.54518e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.30949e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.23641e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.23986e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.36271e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.14161e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.10369e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.57893e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 9.07018e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 1.08739e-05 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 1.11090e-05 Reject MDRP_FITARCIMAGE: r2: Line 41 8300.3260 2.78691e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.10567e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 1.07795e-05 Reject MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.32543e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.09579e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 46 8591.2583 2.78626e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.65143e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.14852e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.30941e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.12619e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 1.00452e-05 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.30053e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.36863e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 5.50835e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.45121e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.18827e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 4.56606e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.58864e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.22136e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.82265e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.31685e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.31196e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.17022e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.24201e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 116. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 11398 pixels XY2TRACESET: r2: Total rejected = 2043 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.01 1.02 1.04 1.03 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00200839.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00200838.fit paired with arc sdR-r2-00200839.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 203 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5247.7404 10432.402 MDRP_SUPERFLAT: r2: Creating superflat from 704 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 706599 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.09612 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8315/57180/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 670. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 671. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 2574. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.7 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 2574. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 22:33:37 2016