MDRP_REDUCE2D: Log file mgDiag2d-8329-57083.log opened Fri Mar 11 13:14:46 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp131 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8329-57083.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8329 at Fri Mar 11 13:14:48 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8329-57068-50.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 2 MDRP_CALIB: b1: Reading flat sdR-b1-00195675.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06298 1.99719 1.93129 1.88549 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00195675.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 0.999001 MDRP_CCPEAKS: b1: Traces shifted by 3.00000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.974643 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 705 MDRP_CCPEAKS: b1: Number of Missing Fibers: 4 MDRP_CCPEAKS: b1: Number of missing edge fibers: 3 MDRP_CCPEAKS: b1: Number of missing interior fibers: 1 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 4 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 55 87 125 647 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 571 726 894 3440 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 54 86 124 646 MDRP_CCTRACEFIBERS: b1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 646 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00195675.fit XY2TRACESET: b1: Total rejected = 493052 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 6 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.04 1.05 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 470197 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 11 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.04 1.05 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00195675.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00195675.fit MDRP_CALIB: b1: Tracing flat # 2 of 2 MDRP_CALIB: b1: Reading flat sdR-b1-00195683.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.04989 1.99508 1.94052 1.87594 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00195683.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 0.999001 MDRP_CCPEAKS: b1: Traces shifted by 2.80000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.975625 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 705 MDRP_CCPEAKS: b1: Number of Missing Fibers: 4 MDRP_CCPEAKS: b1: Number of missing edge fibers: 3 MDRP_CCPEAKS: b1: Number of missing interior fibers: 1 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 4 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 55 87 125 647 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 570 725 894 3439 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 54 86 124 646 MDRP_CCTRACEFIBERS: b1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 646 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00195683.fit XY2TRACESET: b1: Total rejected = 501840 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 13 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.05 1.05 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 473831 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 18 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.05 1.05 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00195683.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00195683.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 2 MDRP_CALIB: b1: Reading arc sdR-b1-00195676.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.02178 1.97504 1.93426 1.86646 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 3.55643e-05 MDRP_CALIB: b1: Arc sdR-b1-00195676.fit paired with flat sdR-b1-00195675.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 32193 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 480 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 122 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 33 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 32836 MDRP_CALIB: b1: Shifting traces with match_trace 0.00878906 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 35 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67852 0.20357 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -151 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67852 0.20330 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.735248 MDRP_FITARCIMAGE: b1: Best correlation = 0.735248 MDRP_FITARCIMAGE: b1: ASET = 3.67852 0.20330 -0.02427 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68035 0.20133 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68035 0.20133 -0.02416 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792408 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67994 0.20187 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68004 0.20157 -0.02417 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788874 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67974 0.20195 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67974 0.20195 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791070 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67934 0.20249 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67944 0.20218 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790065 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20256 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67914 0.20256 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789626 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20255 -0.02401 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67904 0.20258 -0.02414 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.781578 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20302 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02420 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.782302 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786250 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67853 0.20317 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67853 0.20317 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.782650 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67852 0.20357 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -151 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67852 0.20330 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784629 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20309 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20339 -0.02415 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.777789 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67852 0.20357 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -151 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67862 0.20327 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.783802 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20340 -0.02427 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.783626 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67872 0.20350 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67872 0.20323 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.783331 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.783710 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67913 0.20296 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67903 0.20299 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787615 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67933 0.20288 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67923 0.20292 -0.02419 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.781238 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67954 0.20242 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67954 0.20242 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784841 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67973 0.20235 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67973 0.20235 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787964 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68014 0.20180 -0.02404 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68004 0.20210 -0.02417 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.786781 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68034 0.20173 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68034 0.20173 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790780 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68074 0.20119 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68064 0.20150 -0.02421 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.788315 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.68511796 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4803 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4774 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4621 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4648 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4961 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4984 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 5069 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 5096 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 5127 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5159 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 10 XY2TRACESET: b1: Total rejected = 5188 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5188 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 3.29113e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.10689e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 1.98672e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.00695e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.16702e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 7.67890e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.69832e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.40113e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.04304e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 7.10916e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.64135e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.82048e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.19036e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.90460e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.07946e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.85946e-05 Reject-offset MDRP_FITARCIMAGE: b1: Line 18 5400.5616 5.00402e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.02796e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.06228e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.07260e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.06698e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.19498e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.47589e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.72037e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.55457e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.20913e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.10075e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.01208e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.51857e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.30951e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.03384e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 9.40741e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 8.41831e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.02256e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.34216e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 1.65324e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 2.56523e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.64127e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.84052e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.55325e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 5.13351e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 8.61377e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 4.36411e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 109. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9832 pixels XY2TRACESET: b1: Total rejected = 936 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.02 1.04 1.06 1.08 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00195676.fit MDRP_CALIB: b1: Extracting arc # 2 of 2 MDRP_CALIB: b1: Reading arc sdR-b1-00195684.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.02526 1.95761 1.91792 1.86105 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 3.17644e-05 MDRP_CALIB: b1: Arc sdR-b1-00195684.fit paired with flat sdR-b1-00195683.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 31494 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 404 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 106 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 28 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 8 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 9 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 32043 MDRP_CALIB: b1: Shifting traces with match_trace -0.0517578 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 44 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20340 -0.02427 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.739700 MDRP_FITARCIMAGE: b1: Best correlation = 0.739700 MDRP_FITARCIMAGE: b1: ASET = 3.67863 0.20340 -0.02427 0.00122 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68054 0.20126 -0.02397 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68044 0.20129 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.796058 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68015 0.20140 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68005 0.20171 -0.02423 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.795704 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67994 0.20187 -0.02399 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67984 0.20190 -0.02411 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794306 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67954 0.20242 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67954 0.20215 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794025 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67934 0.20249 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67924 0.20252 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792975 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20256 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67904 0.20286 -0.02426 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.789134 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67893 0.20303 -0.02426 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.787521 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789361 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20313 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786123 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20340 -0.02427 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.786116 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20340 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786013 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20340 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786033 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67872 0.20350 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67872 0.20323 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786635 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20333 -0.02426 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.785903 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67893 0.20303 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786974 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67913 0.20296 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67913 0.20296 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791015 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67933 0.20289 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67933 0.20262 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787239 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67974 0.20234 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67964 0.20238 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788099 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67993 0.20227 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67983 0.20231 -0.02423 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792134 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68013 0.20220 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68013 0.20194 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792577 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68053 0.20166 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68044 0.20170 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794635 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68073 0.20159 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68083 0.20129 -0.02414 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791312 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.67411040 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4903 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4875 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4783 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4755 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4770 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4847 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4879 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 4887 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 4915 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 4953 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 4953 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 5.14421e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.09057e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 2.53110e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.36634e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.10838e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 7.93301e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.88639e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 3.80096e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 9.88507e-06 MDRP_FITARCIMAGE: b1: Line 11 4662.3520 5.62620e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.51160e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.75323e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.55411e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.80589e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.17824e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.52617e-05 Reject MDRP_FITARCIMAGE: b1: Line 18 5400.5616 4.80142e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.03262e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.02052e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.10499e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.08286e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.08844e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.40448e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.61657e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.18493e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.21452e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.18868e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 9.54994e-07 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.99851e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.30119e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.04425e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 8.72405e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 8.10064e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.01255e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.31938e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 1.76759e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 3.03131e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.61692e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.75230e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.49740e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 3.43117e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 6.72855e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 4.00916e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 107. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8668 pixels XY2TRACESET: b1: Total rejected = 1791 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.00 1.04 1.05 1.07 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00195684.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 2 MDRP_CALIB: b1: Flat sdR-b1-00195675.fit paired with arc sdR-b1-00195676.fit MDRP_CALIB: b1: Reading flat sdR-b1-00195675.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06298 1.99719 1.93129 1.88549 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3469.6464 6567.9274 MDRP_SUPERFLAT: b1: Creating superflat from 705 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1060531 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.08026 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b1: Create fiberflats for flat # 2 of 2 MDRP_CALIB: b1: Flat sdR-b1-00195683.fit paired with arc sdR-b1-00195684.fit MDRP_CALIB: b1: Reading flat sdR-b1-00195683.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.04989 1.99508 1.94052 1.87594 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 11 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3470.3669 6568.8088 MDRP_SUPERFLAT: b1: Creating superflat from 705 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1060530 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.08076 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57083/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 1645. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1650. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 2 MDRP_CALIB: r1: Reading flat sdR-r1-00195675.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.83290 3.33127 3.38429 3.26070 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00195675.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 0.999001 MDRP_CCPEAKS: r1: Traces shifted by 3.00000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97371696 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 700 MDRP_CCPEAKS: r1: Number of Missing Fibers: 9 MDRP_CCPEAKS: r1: Number of missing edge fibers: 3 MDRP_CCPEAKS: r1: Number of missing interior fibers: 6 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 9 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 55 87 125 206 230 231 545 563 647 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 566 722 892 1306 1425 1429 2944 3038 3451 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 54 86 124 205 229 230 544 562 646 MDRP_CCTRACEFIBERS: r1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 544 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 562 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 646 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00195675.fit XY2TRACESET: r1: Total rejected = 78644 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 113 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 0.98 1.13 1.07 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 52681 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 85 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.99 1.13 1.07 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 5 bright pixels in extracted flat sdR-r1-00195675.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00195675.fit MDRP_CALIB: r1: Tracing flat # 2 of 2 MDRP_CALIB: r1: Reading flat sdR-r1-00195683.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.83055 3.31493 3.37422 3.24881 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00195683.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 0.999001 MDRP_CCPEAKS: r1: Traces shifted by 2.80000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97532481 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 700 MDRP_CCPEAKS: r1: Number of Missing Fibers: 9 MDRP_CCPEAKS: r1: Number of missing edge fibers: 3 MDRP_CCPEAKS: r1: Number of missing interior fibers: 6 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 9 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 55 87 125 206 230 231 545 563 647 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 566 722 892 1306 1424 1429 2944 3037 3450 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 54 86 124 205 229 230 544 562 646 MDRP_CCTRACEFIBERS: r1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 544 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 562 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 646 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00195683.fit XY2TRACESET: r1: Total rejected = 67754 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 35 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 0.99 1.13 1.07 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 43770 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 15 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 0.99 1.13 1.07 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 24 bright pixels in extracted flat sdR-r1-00195683.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00195683.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 2 MDRP_CALIB: r1: Reading arc sdR-r1-00195676.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.83186 3.33333 3.37177 3.25404 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000390576 MDRP_CALIB: r1: Arc sdR-r1-00195676.fit paired with flat sdR-r1-00195675.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 61185 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1150 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 391 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 136 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 58 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 24 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 11 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 62961 MDRP_CALIB: r1: Shifting traces with match_trace 0.00747681 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 50 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.778859 MDRP_FITARCIMAGE: r1: Best correlation = 0.778859 MDRP_FITARCIMAGE: r1: ASET = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89510 0.16366 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89502 0.16342 -0.01855 0.00118 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772274 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89478 0.16376 -0.01856 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89470 0.16379 -0.01862 0.00117 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.776530 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16427 -0.01857 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89447 0.16427 -0.01857 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772624 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89399 0.16443 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89415 0.16464 -0.01870 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772429 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16488 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16488 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772871 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16494 -0.01878 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16521 -0.01884 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773035 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16539 -0.01885 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768444 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16545 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771961 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16550 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16577 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771911 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769676 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770569 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771348 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770766 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16558 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770910 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01879 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16566 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770521 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16534 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89359 0.16537 -0.01896 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771845 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16528 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16528 -0.01889 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773212 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16478 -0.01870 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89407 0.16480 -0.01883 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770202 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16467 -0.01863 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89439 0.16470 -0.01876 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774962 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89463 0.16421 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89463 0.16421 -0.01875 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773435 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16406 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89503 0.16408 -0.01861 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772718 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89542 0.16355 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89534 0.16357 -0.01860 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.782230 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.1830576 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.30600342 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7274 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7191 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7161 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7046 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 6989 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 6876 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 6856 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 6842 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 6866 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 6871 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 6895 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 6791 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.13133e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 5.07770e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.17231e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.22749e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.14855e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.12956e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 2.98732e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.47359e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.12670e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 2.10432e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.95463e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.63894e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.12985e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 2.01804e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.46787e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.28597e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.30109e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 9.38436e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.36721e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.09557e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.25054e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.41093e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.64886e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.87406e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.20798e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.20371e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.29133e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.16045e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.35495e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.60103e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.24519e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.08614e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.01512e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.87528e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.91816e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.06423e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.08967e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.30350e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.99553e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.03254e-05 MDRP_FITARCIMAGE: r1: Line 40 8103.6930 8.22969e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 3.18469e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.36625e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 7.98167e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.72753e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.08198e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.71885e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.87729e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.25336e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.54276e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.39517e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 7.89011e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.24039e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.77873e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.75482e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 3.49791e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.46971e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.34820e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.95799e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.61600e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 5.96474e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.14719e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 2.80382e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.13049e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.00735e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 129. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 14223 pixels XY2TRACESET: r1: Total rejected = 2860 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.07 1.02 1.06 1.02 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00195676.fit MDRP_CALIB: r1: Extracting arc # 2 of 2 MDRP_CALIB: r1: Reading arc sdR-r1-00195684.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.81915 3.32365 3.36944 3.22997 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000244662 MDRP_CALIB: r1: Arc sdR-r1-00195684.fit paired with flat sdR-r1-00195683.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 62680 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1003 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 387 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 160 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 55 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 20 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 5 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 64312 MDRP_CALIB: r1: Shifting traces with match_trace -0.0510254 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 45 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774472 MDRP_FITARCIMAGE: r1: Best correlation = 0.774472 MDRP_FITARCIMAGE: r1: ASET = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89510 0.16366 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89502 0.16342 -0.01861 0.00118 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768272 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89478 0.16376 -0.01856 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89470 0.16379 -0.01862 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772050 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16427 -0.01857 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89447 0.16427 -0.01857 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769240 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89399 0.16443 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89415 0.16464 -0.01870 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768235 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16488 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16488 -0.01883 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770051 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16494 -0.01878 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16521 -0.01890 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768800 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16539 -0.01885 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765520 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16545 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768511 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16550 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16577 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768029 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765957 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766814 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767270 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767083 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16571 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770265 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16566 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767773 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16534 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16534 -0.01890 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769619 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16528 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16528 -0.01889 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769417 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16478 -0.01870 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89407 0.16480 -0.01883 0.00117 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767543 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16467 -0.01863 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89439 0.16470 -0.01876 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771102 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89463 0.16421 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89463 0.16421 -0.01875 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769826 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16406 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89503 0.16408 -0.01861 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770902 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89542 0.16355 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89534 0.16357 -0.01860 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.777094 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.3354648 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.33220824 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 8052 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 8007 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7968 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7919 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7834 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7738 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7698 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7692 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7703 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7700 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7696 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 7683 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 7662 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.21242e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.97803e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.13444e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.09153e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.05962e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.07278e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.11459e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.21023e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.28607e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.91247e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.92791e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.59229e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.10208e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 2.01083e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.37564e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.35119e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 6.85073e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.26343e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.33579e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.02389e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.07201e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.33561e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.74819e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.84534e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.52129e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.23095e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.42522e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.14454e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.22725e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.45137e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.12588e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.10508e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.03182e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.66554e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.81920e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.16135e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.15027e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.18510e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.76478e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.09635e-05 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 9.95579e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.81803e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.10157e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 9.57802e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.33468e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.14473e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.46991e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.64077e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.09393e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.58108e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.32801e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 9.89649e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.11961e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.40393e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.63949e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 3.47603e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.59585e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.59705e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 5.11016e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.50900e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 5.74566e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.12063e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.16046e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.11168e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.04263e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 129. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 14030 pixels XY2TRACESET: r1: Total rejected = 3131 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.07 1.02 1.06 1.02 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00195684.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 2 MDRP_CALIB: r1: Flat sdR-r1-00195675.fit paired with arc sdR-r1-00195676.fit MDRP_CALIB: r1: Reading flat sdR-r1-00195675.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.83290 3.33127 3.38429 3.26070 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 149 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5156.0863 10354.019 MDRP_SUPERFLAT: r1: Creating superflat from 689 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 734363 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.06762 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r1: Create fiberflats for flat # 2 of 2 MDRP_CALIB: r1: Flat sdR-r1-00195683.fit paired with arc sdR-r1-00195684.fit MDRP_CALIB: r1: Reading flat sdR-r1-00195683.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.83055 3.31493 3.37422 3.24881 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 98 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5156.2051 10354.123 MDRP_SUPERFLAT: r1: Creating superflat from 689 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 734316 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.06880 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57083/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 1828. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1829. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 2 MDRP_CALIB: b2: Reading flat sdR-b2-00195675.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.95764 2.15755 2.05914 1.80066 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00195675.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 0.998501 MDRP_CCPEAKS: b2: Traces shifted by 4.70000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.948004 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 703 MDRP_CCPEAKS: b2: Number of Missing Fibers: 11 MDRP_CCPEAKS: b2: Number of missing edge fibers: 4 MDRP_CCPEAKS: b2: Number of missing interior fibers: 7 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 11 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 191 192 193 194 195 196 197 198 354 682 714 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 1229 1234 1239 1244 1250 1255 1260 1265 2016 3611 3765 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 190 191 192 193 194 195 196 197 353 681 713 MDRP_CCTRACEFIBERS: b2: Fiber 190 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 191 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 192 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 193 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 195 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 196 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 197 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 681 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 713 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00195675.fit XY2TRACESET: b2: Total rejected = 460421 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.95 0.93 1.02 0.99 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 363735 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.95 0.93 1.02 0.99 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00195675.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00195675.fit MDRP_CALIB: b2: Tracing flat # 2 of 2 MDRP_CALIB: b2: Reading flat sdR-b2-00195683.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.96737 2.09237 2.06370 1.81582 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00195683.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 0.998501 MDRP_CCPEAKS: b2: Traces shifted by 4.90000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.953385 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 703 MDRP_CCPEAKS: b2: Number of Missing Fibers: 11 MDRP_CCPEAKS: b2: Number of missing edge fibers: 4 MDRP_CCPEAKS: b2: Number of missing interior fibers: 7 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 11 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 191 192 193 194 195 196 197 198 354 682 714 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 1229 1234 1239 1245 1250 1255 1260 1265 2016 3611 3766 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 190 191 192 193 194 195 196 197 353 681 713 MDRP_CCTRACEFIBERS: b2: Fiber 190 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 191 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 192 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 193 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 195 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 196 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 197 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 681 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 713 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00195683.fit XY2TRACESET: b2: Total rejected = 463083 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.94 0.93 1.02 0.99 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 356339 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.94 0.93 1.02 0.99 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00195683.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00195683.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 2 MDRP_CALIB: b2: Reading arc sdR-b2-00195676.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.90805 2.09250 2.02413 1.76797 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 6.70912e-05 MDRP_CALIB: b2: Arc sdR-b2-00195676.fit paired with flat sdR-b2-00195675.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 21975 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 337 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 73 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 18 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 22412 MDRP_CALIB: b2: Shifting traces with match_trace 0.0106201 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 61 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.739953 MDRP_FITARCIMAGE: b2: Best correlation = 0.739953 MDRP_FITARCIMAGE: b2: ASET = 3.68682 0.19982 -0.02402 0.00122 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68933 0.19772 -0.02382 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68933 0.19772 -0.02388 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.787151 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68894 0.19786 -0.02371 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68885 0.19817 -0.02384 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.791292 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19840 -0.02378 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68847 0.19843 -0.02391 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794102 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68818 0.19880 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795413 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19901 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68789 0.19904 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796457 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19908 -0.02375 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19911 -0.02387 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795940 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19915 -0.02375 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19918 -0.02388 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796270 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19922 -0.02376 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68731 0.19952 -0.02388 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.787411 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19968 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.791069 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19975 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68702 0.19975 -0.02401 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.791613 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19975 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19979 -0.02396 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.791104 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.796453 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.795645 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68672 0.19986 -0.02402 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.792202 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19956 -0.02402 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795535 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19939 -0.02396 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795961 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68701 0.19935 -0.02401 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.797167 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19928 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19902 -0.02395 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796292 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19881 -0.02388 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68730 0.19885 -0.02400 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796430 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68759 0.19875 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19878 -0.02394 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794679 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68778 0.19827 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68778 0.19827 -0.02393 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.793232 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68797 0.19820 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68797 0.19820 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.791822 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.66148457 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 5177 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 5123 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4980 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 5009 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5320 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5348 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5448 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5460 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5500 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5526 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 10 XY2TRACESET: b2: Total rejected = 5557 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5557 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 3.87882e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.10243e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.21998e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.44160e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.14140e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 6.80708e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.76544e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 5.35530e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.14749e-05 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 7.37603e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 7.69295e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.55088e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.57530e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 1.94524e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 8.03091e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 0.000110887 Reject MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.89942e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.51674e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 9.94353e-06 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.05064e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.06646e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.08295e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.40493e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.54356e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 5.30175e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.17604e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.28731e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.59676e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 9.67651e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.93458e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.81908e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 2.07926e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.17821e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 9.33916e-07 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.25290e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.24655e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.01223e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.13530e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.89443e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.55034e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 4.11529e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.39655e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.21104e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 108. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 11255 pixels XY2TRACESET: b2: Total rejected = 1396 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.04 1.02 1.07 1.05 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00195676.fit MDRP_CALIB: b2: Extracting arc # 2 of 2 MDRP_CALIB: b2: Reading arc sdR-b2-00195684.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.94329 2.10731 2.04055 1.78941 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 5.73540e-05 MDRP_CALIB: b2: Arc sdR-b2-00195684.fit paired with flat sdR-b2-00195683.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 23833 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 379 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 104 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 34 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 10 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 8 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 24373 MDRP_CALIB: b2: Shifting traces with match_trace -0.0349121 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 55 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.744658 MDRP_FITARCIMAGE: b2: Best correlation = 0.744658 MDRP_FITARCIMAGE: b2: ASET = 3.68682 0.19982 -0.02402 0.00124 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68933 0.19772 -0.02376 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68933 0.19772 -0.02376 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.791356 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68894 0.19787 -0.02365 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68885 0.19817 -0.02378 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.792611 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19840 -0.02372 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68847 0.19844 -0.02385 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.798793 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68808 0.19884 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799577 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19901 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68789 0.19905 -0.02387 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799070 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19914 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.803406 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19915 -0.02369 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19919 -0.02382 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798686 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19968 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19942 -0.02401 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796066 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19969 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02395 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795134 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19975 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68702 0.19975 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796129 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19976 -0.02377 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19979 -0.02390 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.794293 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.800137 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68672 0.19986 -0.02402 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.799218 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68672 0.19986 -0.02402 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799606 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19956 -0.02402 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801479 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19936 -0.02377 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19939 -0.02390 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800611 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19939 -0.02402 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800943 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19928 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68711 0.19932 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801737 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19882 -0.02376 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68730 0.19885 -0.02388 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799371 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68759 0.19875 -0.02375 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19878 -0.02388 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799681 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68778 0.19828 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68778 0.19828 -0.02381 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796476 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68797 0.19820 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68797 0.19820 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796732 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.74364460 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 5337 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 5329 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 5235 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 5215 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5219 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5291 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5321 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5352 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5374 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5384 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5384 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 4.35484e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.13838e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.59391e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.76237e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.08662e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 7.30138e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.96256e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 4.90124e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.00319e-05 MDRP_FITARCIMAGE: b2: Line 11 4662.3520 5.64671e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 7.61935e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.76039e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.69785e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 1.99040e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.80221e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 1.42939e-05 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.69251e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.59653e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 9.91582e-06 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.06315e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.11771e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.12219e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.36830e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.70989e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 4.97722e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.22073e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.32669e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.54325e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 9.37682e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 3.16482e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.68649e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 2.12086e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.18427e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 9.70193e-07 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.26084e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.31672e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.17075e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.13527e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.79183e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.61803e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 3.35175e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.49250e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.96221e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 111. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 10497 pixels XY2TRACESET: b2: Total rejected = 2184 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.04 1.04 1.07 1.06 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00195684.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 2 MDRP_CALIB: b2: Flat sdR-b2-00195675.fit paired with arc sdR-b2-00195676.fit MDRP_CALIB: b2: Reading flat sdR-b2-00195675.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.95764 2.15755 2.05914 1.80066 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3557.1443 6662.1982 MDRP_SUPERFLAT: b2: Creating superflat from 699 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1117584 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.08772 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b2: Create fiberflats for flat # 2 of 2 MDRP_CALIB: b2: Flat sdR-b2-00195683.fit paired with arc sdR-b2-00195684.fit MDRP_CALIB: b2: Reading flat sdR-b2-00195683.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.96737 2.09237 2.06370 1.81582 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3556.7041 6661.8670 MDRP_SUPERFLAT: b2: Creating superflat from 697 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1117338 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.08676 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57083/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 1607. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1608. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 2 MDRP_CALIB: r2: Reading flat sdR-r2-00195675.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.86544 2.84571 2.72354 2.91818 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00195675.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 0.998501 MDRP_CCPEAKS: r2: Traces shifted by 4.50000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.94837547 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 699 MDRP_CCPEAKS: r2: Number of Missing Fibers: 15 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 11 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 15 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 36 37 38 39 191 192 193 194 195 196 197 198 354 682 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 448 451 456 460 465 1223 1228 1233 1238 1244 1249 1254 1259 2013 3616 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 35 36 37 38 190 191 192 193 194 195 196 197 353 681 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 190 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 191 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 192 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 193 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 195 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 196 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 197 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 681 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00195675.fit XY2TRACESET: r2: Total rejected = 68934 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 1281 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.99 1.02 1.07 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 35546 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 838 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.99 1.02 1.07 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 4 bright pixels in extracted flat sdR-r2-00195675.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00195675.fit MDRP_CALIB: r2: Tracing flat # 2 of 2 MDRP_CALIB: r2: Reading flat sdR-r2-00195683.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.86949 2.85671 2.73461 2.91791 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00195683.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 0.998501 MDRP_CCPEAKS: r2: Traces shifted by 4.70000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.95065177 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 699 MDRP_CCPEAKS: r2: Number of Missing Fibers: 15 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 11 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 15 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 36 37 38 39 191 192 193 194 195 196 197 198 354 682 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 448 452 457 460 465 1223 1228 1233 1239 1244 1249 1254 1259 2013 3616 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 35 36 37 38 190 191 192 193 194 195 196 197 353 681 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 190 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 191 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 192 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 193 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 195 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 196 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 197 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 681 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00195683.fit XY2TRACESET: r2: Total rejected = 73279 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 1087 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.98 1.02 1.07 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 37538 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 795 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.98 1.02 1.07 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 15 bright pixels in extracted flat sdR-r2-00195683.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00195683.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 2 MDRP_CALIB: r2: Reading arc sdR-r2-00195676.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.87590 2.83487 2.72672 2.92021 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000650136 MDRP_CALIB: r2: Arc sdR-r2-00195676.fit paired with flat sdR-r2-00195675.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 42089 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 665 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 172 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 53 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 19 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 7 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 43007 MDRP_CALIB: r2: Shifting traces with match_trace 0.0134277 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 488 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89737 0.16410 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89729 0.16386 -0.01865 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.781518 MDRP_FITARCIMAGE: r2: Best correlation = 0.781518 MDRP_FITARCIMAGE: r2: ASET = 3.89729 0.16386 -0.01865 0.00118 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89905 0.16151 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89897 0.16154 -0.01829 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769329 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89859 0.16207 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89859 0.16207 -0.01831 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772932 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89829 0.16258 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89837 0.16255 -0.01831 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772636 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89797 0.16269 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89813 0.16290 -0.01832 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769721 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89782 0.16314 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89790 0.16311 -0.01833 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772835 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89766 0.16319 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89766 0.16319 -0.01846 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769803 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89751 0.16325 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89758 0.16349 -0.01840 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772531 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89752 0.16365 -0.01841 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771320 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16370 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770888 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16370 -0.01847 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769005 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16397 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771383 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16397 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770921 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16394 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771364 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16367 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770635 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89768 0.16359 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89768 0.16359 -0.01840 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771712 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16354 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89784 0.16354 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772463 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89798 0.16309 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89806 0.16333 -0.01833 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.773098 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89830 0.16298 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89830 0.16298 -0.01832 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.774102 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89845 0.16253 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89861 0.16274 -0.01831 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770804 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89884 0.16239 -0.01830 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.774151 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89906 0.16191 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89914 0.16188 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771301 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89954 0.16148 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770796 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.2752088 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.38528973 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 7942 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 7900 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7828 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7729 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7649 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7528 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7454 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7413 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7429 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7432 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7455 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 7269 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.15165e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.51623e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.17061e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.20940e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.20046e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.20514e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.39209e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.13618e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.14356e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.21313e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.31117e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.30402e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.13788e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.64261e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 1.00141e-06 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 9.12107e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.37069e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.56407e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.49882e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 6.73939e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.46353e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 2.16118e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.32366e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.42138e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.93347e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.11369e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.36545e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.48089e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.52832e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.73445e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.91064e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.23878e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.16589e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.52762e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.63974e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.13322e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.05616e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.97068e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 8.06516e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 8.91166e-06 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 8.47520e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.20525e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.24792e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 7.94159e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.45647e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.05917e-05 MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.26974e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.80585e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.46585e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.67067e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.63962e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 7.99590e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.30080e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.36878e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.04271e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.52058e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.18569e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 5.14160e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.75902e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.10756e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.88668e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.23019e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.43659e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.16557e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.30869e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 127. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 12336 pixels XY2TRACESET: r2: Total rejected = 3094 MDRP_FITDISPERSION: r2: Median wavelength widths = 0.99 1.01 1.03 1.01 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00195676.fit MDRP_CALIB: r2: Extracting arc # 2 of 2 MDRP_CALIB: r2: Reading arc sdR-r2-00195684.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.87304 2.84033 2.72316 2.91875 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000678989 MDRP_CALIB: r2: Arc sdR-r2-00195684.fit paired with flat sdR-r2-00195683.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 50575 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 938 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 363 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 148 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 51 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 29 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 16 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 11 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 5 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 52137 MDRP_CALIB: r2: Shifting traces with match_trace -0.0395508 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 412 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89737 0.16410 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89729 0.16386 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.778517 MDRP_FITARCIMAGE: r2: Best correlation = 0.778517 MDRP_FITARCIMAGE: r2: ASET = 3.89729 0.16386 -0.01859 0.00114 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89889 0.16156 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89897 0.16154 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767515 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89859 0.16207 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89859 0.16207 -0.01831 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771608 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89829 0.16258 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89829 0.16258 -0.01832 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.772107 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89797 0.16269 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89805 0.16293 -0.01833 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766955 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89782 0.16314 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89782 0.16314 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767597 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89766 0.16319 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89766 0.16319 -0.01840 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767248 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89751 0.16325 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89758 0.16349 -0.01840 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769032 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16367 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769496 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16370 -0.01853 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768049 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89728 0.16373 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767311 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16374 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16395 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765413 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16374 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16395 -0.01853 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765991 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16394 -0.01841 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766521 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16369 -0.01865 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16366 -0.01853 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766430 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89768 0.16359 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89760 0.16362 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769271 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16354 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89784 0.16354 -0.01833 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768088 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89798 0.16309 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89798 0.16335 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770077 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89830 0.16298 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89830 0.16298 -0.01832 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770864 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89845 0.16253 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89853 0.16277 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769742 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89876 0.16242 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89884 0.16239 -0.01830 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770140 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89906 0.16191 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89914 0.16188 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767510 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89954 0.16148 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766315 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.2396413 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.38187719 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 8711 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 8654 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 8508 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 8422 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 8350 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 8267 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 8218 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 8158 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 8174 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 8188 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 8192 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 8196 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 8067 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.16563e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.32900e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.16218e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.10603e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.15852e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.12906e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.39902e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.25888e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.15562e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.24302e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.44747e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.46442e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.16845e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.54011e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 1.03614e-06 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 9.57613e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.93491e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 9.15188e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.39188e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 8.09321e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.41072e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 2.07042e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.34571e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.50363e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.81189e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.05114e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.30144e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.35401e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.50029e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.73162e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.80261e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.30327e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.24120e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.56281e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.63461e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.09000e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.10240e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.86727e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.25909e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 1.11802e-05 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 9.82427e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.08809e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.35351e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 9.64698e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.61665e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.06399e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.08903e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.72982e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.05895e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.66857e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.45864e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 9.63335e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.25038e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.27724e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 5.87759e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.66771e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.11947e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 4.98287e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.68969e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 2.91755e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.50432e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.20904e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.41096e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.18474e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.22582e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 130. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 13047 pixels XY2TRACESET: r2: Total rejected = 3485 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.00 1.02 1.02 1.01 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00195684.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 2 MDRP_CALIB: r2: Flat sdR-r2-00195675.fit paired with arc sdR-r2-00195676.fit MDRP_CALIB: r2: Reading flat sdR-r2-00195675.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.86544 2.84571 2.72354 2.91818 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 8621 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5238.0962 10423.636 MDRP_SUPERFLAT: r2: Creating superflat from 693 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 737356 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.08403 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r2: Create fiberflats for flat # 2 of 2 MDRP_CALIB: r2: Flat sdR-r2-00195683.fit paired with arc sdR-r2-00195684.fit MDRP_CALIB: r2: Reading flat sdR-r2-00195683.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.86949 2.85671 2.73461 2.91791 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 7778 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5237.4485 10422.961 MDRP_SUPERFLAT: r2: Creating superflat from 693 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 737052 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.08511 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57083/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 1778. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1779. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 6866. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1573.2 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 6869. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 15:09:14 2016