MDRP_REDUCE2D: Log file mgDiag2d-8329-57084.log opened Fri Mar 11 13:22:47 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp132 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8329-57084.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8329 at Fri Mar 11 13:22:49 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8329-57068-50.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00195726.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.04803 1.98268 1.95648 1.88809 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00195726.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 0.999001 MDRP_CCPEAKS: b1: Traces shifted by 2.20000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.970266 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 706 MDRP_CCPEAKS: b1: Number of Missing Fibers: 3 MDRP_CCPEAKS: b1: Number of missing edge fibers: 3 MDRP_CCPEAKS: b1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 3 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 55 87 125 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 570 725 894 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 54 86 124 MDRP_CCTRACEFIBERS: b1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00195726.fit XY2TRACESET: b1: Total rejected = 497021 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 10 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.98 1.06 1.06 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 472695 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 13 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.98 1.06 1.06 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00195726.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00195726.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00195727.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.01996 1.94031 1.93741 1.85745 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 6.24007e-05 MDRP_CALIB: b1: Arc sdR-b1-00195727.fit paired with flat sdR-b1-00195726.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 32391 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 409 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 99 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 21 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 5 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 32925 MDRP_CALIB: b1: Shifting traces with match_trace 0.00195312 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 40 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67872 0.20350 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67872 0.20323 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.736073 MDRP_FITARCIMAGE: b1: Best correlation = 0.736073 MDRP_FITARCIMAGE: b1: ASET = 3.67872 0.20323 -0.02427 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68054 0.20126 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68044 0.20130 -0.02416 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794134 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68014 0.20180 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68014 0.20154 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791552 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67994 0.20187 -0.02405 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67984 0.20191 -0.02417 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.793752 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67954 0.20242 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67954 0.20215 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.793298 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67934 0.20249 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67924 0.20252 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790088 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20256 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67914 0.20256 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786558 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67893 0.20303 -0.02426 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.785822 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787097 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.783954 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67863 0.20340 -0.02427 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.782318 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67872 0.20350 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67872 0.20323 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785032 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67872 0.20350 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67872 0.20323 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784931 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20302 -0.02402 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20332 -0.02414 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.777452 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67893 0.20303 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.781491 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67913 0.20295 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67903 0.20299 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.783459 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67913 0.20296 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67913 0.20296 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785987 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67933 0.20289 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67933 0.20289 -0.02425 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.785118 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67973 0.20235 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67964 0.20238 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786440 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67993 0.20227 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67983 0.20231 -0.02423 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787759 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68013 0.20220 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68013 0.20194 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789341 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68053 0.20166 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68044 0.20170 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788134 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68094 0.20112 -0.02396 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68084 0.20142 -0.02408 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.786798 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.71693327 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4872 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4858 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4785 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4762 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4775 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4832 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4837 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 4868 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 4893 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 4907 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 4907 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 4.91481e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.09012e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 2.56287e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.20951e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.12624e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 7.77230e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.76997e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.41169e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 9.86117e-06 MDRP_FITARCIMAGE: b1: Line 11 4662.3520 5.30469e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 4.21895e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 3.23221e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.22713e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.84421e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.45783e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.80954e-05 Reject MDRP_FITARCIMAGE: b1: Line 18 5400.5616 5.17147e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.04616e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 9.60429e-06 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.08488e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.10033e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.09028e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.48127e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.36964e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.36989e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.17518e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.07703e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 9.63737e-07 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 1.01416e-05 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.42801e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.02697e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 8.84708e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 7.97542e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 9.59823e-07 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.35869e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 1.86657e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 3.07369e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.70785e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.74140e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.39650e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 3.29074e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 6.41187e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 3.84544e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 104. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8481 pixels XY2TRACESET: b1: Total rejected = 2047 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.00 1.04 1.05 1.08 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00195727.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00195726.fit paired with arc sdR-b1-00195727.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 16 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3470.6086 6569.1734 MDRP_SUPERFLAT: b1: Creating superflat from 705 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1061280 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.07987 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57084/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 735. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 742. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00195726.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.85502 3.32755 3.38362 3.29483 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00195726.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 0.999001 MDRP_CCPEAKS: r1: Traces shifted by 2.00000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97206729 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 701 MDRP_CCPEAKS: r1: Number of Missing Fibers: 8 MDRP_CCPEAKS: r1: Number of missing edge fibers: 3 MDRP_CCPEAKS: r1: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 8 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 55 87 125 206 230 231 545 563 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 565 721 891 1305 1424 1428 2943 3037 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 54 86 124 205 229 230 544 562 MDRP_CCTRACEFIBERS: r1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 544 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 562 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00195726.fit XY2TRACESET: r1: Total rejected = 76665 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 73 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 0.99 1.13 1.06 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 52839 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 54 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 0.99 1.13 1.06 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 36 bright pixels in extracted flat sdR-r1-00195726.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00195726.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00195727.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.82824 3.32073 3.37922 3.27780 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000287353 MDRP_CALIB: r1: Arc sdR-r1-00195727.fit paired with flat sdR-r1-00195726.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 61169 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1125 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 415 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 167 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 82 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 24 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 7 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 62993 MDRP_CALIB: r1: Shifting traces with match_trace 0.00000 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 48 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772111 MDRP_FITARCIMAGE: r1: Best correlation = 0.772111 MDRP_FITARCIMAGE: r1: ASET = 3.89319 0.16590 -0.01898 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89510 0.16366 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89510 0.16339 -0.01849 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768346 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89478 0.16376 -0.01856 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89478 0.16376 -0.01856 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771051 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16427 -0.01863 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89447 0.16427 -0.01863 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769360 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16438 -0.01864 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89415 0.16464 -0.01876 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770201 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16488 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16488 -0.01889 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768274 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16494 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16520 -0.01890 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766082 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16539 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768536 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16545 -0.01897 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768504 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16550 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16574 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767793 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16564 -0.01898 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766604 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765175 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16590 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01891 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765095 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16561 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.765655 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16571 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767358 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16566 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768224 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16534 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16534 -0.01896 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770027 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89383 0.16528 -0.01883 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89383 0.16528 -0.01895 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768366 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16477 -0.01876 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89415 0.16477 -0.01882 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766697 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16467 -0.01869 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89439 0.16469 -0.01882 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768503 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89463 0.16421 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89471 0.16445 -0.01868 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768638 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16406 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89503 0.16382 -0.01861 0.00114 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770206 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89542 0.16355 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89542 0.16355 -0.01854 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773498 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 35, at 7503.8691 Ang: RMS= 0.20176712 pix MDRP_FITARCIMAGE: r1: Discarding line 36, at 7514.6518 Ang: RMS= 0.20709151 pix MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.2258725 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.30175791 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 61 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 8690 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 8655 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 8524 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 8433 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 8359 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 8304 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 8270 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 8261 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 8270 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 8268 MDRP_FITARCIMAGE: r1: Rejecting line at 8408.2096 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 8307 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 8251 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.13555e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.69133e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.23737e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.19272e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.13524e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.05085e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.13450e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.09265e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.11148e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.92867e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 2.16664e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.49290e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.13246e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.79901e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.40765e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.40411e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.37621e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 9.20846e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.49661e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 9.97813e-07 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.08033e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.37991e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.74500e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.78046e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.05024e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.15391e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.24367e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 2.98484e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.29240e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.65666e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.29936e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.17325e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.09732e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.88242e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.80401e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.12543e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.09973e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.46802e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 9.14800e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.11901e-05 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 1.04680e-05 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.85588e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.21544e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 1.05298e-05 Reject MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.51057e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.08658e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.78323e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.56976e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.19957e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.43955e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.20754e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 1.04586e-05 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.21195e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.51420e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.44875e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 2.91451e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.43397e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.37181e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.91325e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.39128e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 5.89159e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.04249e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 2.83763e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.06479e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.02397e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 129. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 11985 pixels XY2TRACESET: r1: Total rejected = 2711 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.07 1.03 1.07 1.03 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00195727.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00195726.fit paired with arc sdR-r1-00195727.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 161 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5156.6979 10354.654 MDRP_SUPERFLAT: r1: Creating superflat from 692 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 733214 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.06834 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57084/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 819. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 820. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00195726.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.00102 2.12773 2.03890 1.82771 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00195726.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 0.998501 MDRP_CCPEAKS: b2: Traces shifted by 3.90000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.952780 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 703 MDRP_CCPEAKS: b2: Number of Missing Fibers: 11 MDRP_CCPEAKS: b2: Number of missing edge fibers: 4 MDRP_CCPEAKS: b2: Number of missing interior fibers: 7 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 11 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 191 192 193 194 195 196 197 198 354 682 714 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 1228 1233 1238 1244 1249 1254 1259 1264 2015 3610 3765 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 190 191 192 193 194 195 196 197 353 681 713 MDRP_CCTRACEFIBERS: b2: Fiber 190 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 191 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 192 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 193 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 195 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 196 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 197 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 681 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 713 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00195726.fit XY2TRACESET: b2: Total rejected = 463512 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.95 0.93 1.02 1.00 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 357854 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.94 0.93 1.02 1.00 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00195726.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00195726.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00195727.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.93916 2.06473 2.03293 1.79465 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 7.16035e-05 MDRP_CALIB: b2: Arc sdR-b2-00195727.fit paired with flat sdR-b2-00195726.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 24307 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 405 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 87 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 22 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 9 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 24834 MDRP_CALIB: b2: Shifting traces with match_trace 0.00732422 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 73 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.742668 MDRP_FITARCIMAGE: b2: Best correlation = 0.742668 MDRP_FITARCIMAGE: b2: ASET = 3.68682 0.19982 -0.02402 0.00124 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68933 0.19772 -0.02376 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68933 0.19772 -0.02376 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.786100 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68894 0.19787 -0.02365 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68885 0.19817 -0.02378 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.788359 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19840 -0.02372 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68847 0.19844 -0.02385 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.794941 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68808 0.19884 -0.02398 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.792247 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19901 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68789 0.19905 -0.02387 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796437 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19914 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800578 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19915 -0.02369 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19919 -0.02382 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796032 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19922 -0.02376 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68731 0.19952 -0.02388 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.789297 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19969 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02395 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.791964 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19975 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68702 0.19975 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.792758 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19976 -0.02377 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19979 -0.02390 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.791383 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.798426 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19982 -0.02402 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796184 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68672 0.19986 -0.02402 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796662 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19956 -0.02402 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798789 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19936 -0.02377 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19939 -0.02390 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798283 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68701 0.19935 -0.02395 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.796644 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19928 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68711 0.19932 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798583 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19882 -0.02382 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68730 0.19885 -0.02394 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797926 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68759 0.19875 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19878 -0.02394 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798101 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68778 0.19827 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68778 0.19827 -0.02387 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795324 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68797 0.19820 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68797 0.19820 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.793662 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.69908803 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 5347 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 5307 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 5269 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 5291 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5370 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5385 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5407 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5426 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5457 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5457 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 4.05213e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.17252e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.52681e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.64975e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.09249e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 6.23572e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.74328e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 4.89624e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.00892e-05 MDRP_FITARCIMAGE: b2: Line 11 4662.3520 5.36048e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 7.78575e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.70320e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.54324e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 1.99502e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 8.30470e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 5.20568e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.72744e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.04745e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.07749e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.13292e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.10985e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.39613e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.74542e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 5.17733e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.18776e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.28487e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.61040e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 8.53104e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 3.00664e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.89049e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 2.05266e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.32648e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 1.05462e-06 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.24515e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.23712e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.15987e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.21714e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.70340e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.56374e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 3.20530e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 4.26713e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.12673e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 113. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 10358 pixels XY2TRACESET: b2: Total rejected = 2368 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.03 1.03 1.08 1.07 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00195727.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00195726.fit paired with arc sdR-b2-00195727.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3556.8227 6661.8663 MDRP_SUPERFLAT: b2: Creating superflat from 697 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1117750 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.08709 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57084/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 735. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 736. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8329/slitmap-8329-57068-50.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00195726.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.78324 2.84447 2.71545 2.85392 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00195726.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 0.998501 MDRP_CCPEAKS: r2: Traces shifted by 3.80000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.94934817 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 699 MDRP_CCPEAKS: r2: Number of Missing Fibers: 15 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 11 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 15 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 36 37 38 39 191 192 193 194 195 196 197 198 354 682 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 447 451 456 460 464 1222 1227 1232 1238 1243 1248 1253 1258 2012 3615 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 35 36 37 38 190 191 192 193 194 195 196 197 353 681 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 190 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 191 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 192 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 193 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 195 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 196 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 197 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 681 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00195726.fit XY2TRACESET: r2: Total rejected = 69693 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 730 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.99 1.02 1.08 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 33793 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 237 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.99 1.02 1.08 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 4 bright pixels in extracted flat sdR-r2-00195726.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00195726.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00195727.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.78483 2.84282 2.73159 2.85450 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000732574 MDRP_CALIB: r2: Arc sdR-r2-00195727.fit paired with flat sdR-r2-00195726.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 45638 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 843 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 256 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 103 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 36 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 6 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 46895 MDRP_CALIB: r2: Shifting traces with match_trace 0.0139160 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 458 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89737 0.16410 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89729 0.16386 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.777424 MDRP_FITARCIMAGE: r2: Best correlation = 0.777424 MDRP_FITARCIMAGE: r2: ASET = 3.89729 0.16386 -0.01859 0.00114 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89889 0.16156 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89897 0.16154 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765909 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89859 0.16207 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89859 0.16207 -0.01831 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770412 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89829 0.16258 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89829 0.16258 -0.01832 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771103 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89797 0.16269 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89805 0.16293 -0.01833 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767193 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89782 0.16314 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89782 0.16314 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768138 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89766 0.16319 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89766 0.16319 -0.01840 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766417 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89751 0.16325 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89758 0.16349 -0.01834 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767574 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16369 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16366 -0.01847 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768394 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16370 -0.01847 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767594 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16374 -0.01872 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89728 0.16371 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765894 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16374 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89728 0.16398 -0.01853 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765299 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16374 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89736 0.16395 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765306 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16370 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16394 -0.01841 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765943 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16369 -0.01865 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16366 -0.01853 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765228 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89768 0.16359 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89760 0.16362 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768606 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16354 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89784 0.16354 -0.01833 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766868 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89798 0.16309 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89798 0.16335 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770181 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89830 0.16298 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89830 0.16298 -0.01832 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770097 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89845 0.16253 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89853 0.16277 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769410 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89876 0.16242 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89884 0.16239 -0.01830 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769546 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89906 0.16191 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89914 0.16188 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766949 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89954 0.16148 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765821 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 35, at 7503.8691 Ang: RMS= 0.23131707 pix MDRP_FITARCIMAGE: r2: Discarding line 36, at 7514.6518 Ang: RMS= 0.23079574 pix MDRP_FITARCIMAGE: r2: Discarding line 45, at 8521.4422 Ang: RMS= 0.21134257 pix MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.2728357 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.40953431 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 60 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 9426 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 9366 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 9253 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 9184 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 9097 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 8938 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 8895 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 8836 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 8842 MDRP_FITARCIMAGE: r2: Rejecting line at 8408.2096 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 8840 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 8798 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.13511e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.35659e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.19834e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.24857e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.53648e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.20832e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.22200e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.08360e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.16109e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 2.97015e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.13416e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.48994e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.11610e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.57519e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 9.93169e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 1.05884e-06 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.63307e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.84912e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.35553e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 6.87170e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.28125e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.89910e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.39086e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.43010e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.65741e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.06547e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.32307e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.38520e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.44046e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.59851e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.78750e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.32840e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.31944e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.61846e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.70041e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.13614e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.14386e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 37 7535.7740 7.10750e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 8.64294e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 1.12327e-05 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 1.02040e-05 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 2.95858e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.27059e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 1.10078e-05 Reject MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.44765e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.15857e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.05236e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.65678e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.07015e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.41619e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.29943e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 1.01310e-05 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.13959e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.32232e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.11641e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.61269e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.00504e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 5.08457e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.72326e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.28418e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 5.03057e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.24070e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.51524e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.15710e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.20053e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 132. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 10378 pixels XY2TRACESET: r2: Total rejected = 2885 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.00 1.02 1.04 1.03 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00195727.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00195726.fit paired with arc sdR-r2-00195727.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 7842 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5237.5970 10423.327 MDRP_SUPERFLAT: r2: Creating superflat from 693 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 737331 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.08429 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8329/57084/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 836. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 837. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 3134. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.8 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 3136. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:15:03 2016