MDRP_REDUCE2D: Log file mgDiag2d-8330-57183.log opened Fri Mar 11 13:24:12 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp129 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8330-57183.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8330 at Fri Mar 11 13:24:13 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8330-57179-02.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8330/slitmap-8330-57179-02.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00200943.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.07148 1.96744 1.88298 1.90258 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00200943.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00250 MDRP_CCPEAKS: b1: Traces shifted by -5.20000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.968453 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 704 MDRP_CCPEAKS: b1: Number of Missing Fibers: 5 MDRP_CCPEAKS: b1: Number of missing edge fibers: 5 MDRP_CCPEAKS: b1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 5 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 149 285 381 485 613 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 1027 1677 2139 2633 3275 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 148 284 380 484 612 MDRP_CCTRACEFIBERS: b1: Fiber 148 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 284 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 380 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 484 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 612 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00200943.fit XY2TRACESET: b1: Total rejected = 505137 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 14 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.96 0.97 1.14 1.05 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 474616 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.96 0.97 1.14 1.05 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00200943.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00200943.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00200944.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.04289 1.92077 1.84701 1.86754 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 3.15863e-05 MDRP_CALIB: b1: Arc sdR-b1-00200944.fit paired with flat sdR-b1-00200943.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 27912 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 351 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 102 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 24 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 10 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 28407 MDRP_CALIB: b1: Shifting traces with match_trace -0.0155029 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 10 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.737430 MDRP_FITARCIMAGE: b1: Best correlation = 0.737430 MDRP_FITARCIMAGE: b1: ASET = 3.67873 0.20310 -0.02427 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68035 0.20133 -0.02404 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68025 0.20137 -0.02416 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.796227 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68015 0.20140 -0.02404 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68005 0.20144 -0.02417 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790605 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67974 0.20195 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67974 0.20195 -0.02424 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.790538 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67955 0.20202 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67955 0.20202 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789378 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67934 0.20249 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67934 0.20249 -0.02425 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.789343 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20256 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67914 0.20256 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789997 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20255 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67904 0.20285 -0.02420 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.784721 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.786057 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787162 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786503 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785797 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786107 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784245 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785367 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787938 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67903 0.20299 -0.02426 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.783457 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67913 0.20296 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67913 0.20269 -0.02425 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789191 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67954 0.20241 -0.02400 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67944 0.20244 -0.02413 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785936 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67954 0.20242 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67954 0.20242 -0.02424 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.789391 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67994 0.20187 -0.02405 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67984 0.20191 -0.02417 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788896 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68014 0.20180 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68004 0.20184 -0.02423 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.789162 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68054 0.20125 -0.02391 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68044 0.20129 -0.02404 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786272 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.21257458 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4893 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4849 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4693 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4717 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 5030 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 5084 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 5087 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 5125 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 5168 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5203 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5203 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 6.42837e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.07247e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 3.25806e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 3.02413e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.20930e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 8.43108e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.87492e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 3.40941e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.14798e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 7.33075e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.23140e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.84639e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.47690e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.92156e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.16553e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.63988e-05 Reject MDRP_FITARCIMAGE: b1: Line 18 5400.5616 5.12135e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.10638e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.03909e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.08838e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.09381e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.06965e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.57275e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.53391e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.27231e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.82761e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.71827e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.91984e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.43731e-06 MDRP_FITARCIMAGE: b1: Line 31 6029.9970 2.57648e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.75405e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 1.28319e-06 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 1.00112e-06 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.16717e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 2.83257e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 4.76792e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 5.19003e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 2.43392e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 2.37708e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.89656e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 4.67936e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 9.56445e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 8.57251e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 104. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 13084 pixels XY2TRACESET: b1: Total rejected = 558 MDRP_FITDISPERSION: b1: Median wavelength widths = 0.99 1.03 1.07 1.11 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00200944.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00200943.fit paired with arc sdR-b1-00200944.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 15 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3471.5854 6562.7615 MDRP_SUPERFLAT: b1: Creating superflat from 704 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1067322 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.05322 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56895 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8330/57183/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 705. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 708. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8330/slitmap-8330-57179-02.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00200943.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 4.03937 3.20799 3.26914 3.33546 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00200943.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00300 MDRP_CCPEAKS: r1: Traces shifted by -1.30000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.94574409 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 699 MDRP_CCPEAKS: r1: Number of Missing Fibers: 10 MDRP_CCPEAKS: r1: Number of missing edge fibers: 5 MDRP_CCPEAKS: r1: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 10 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 149 206 230 231 285 381 485 544 563 613 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 1026 1305 1424 1429 1680 2143 2640 2942 3038 3286 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 148 205 229 230 284 380 484 543 562 612 MDRP_CCTRACEFIBERS: r1: Fiber 148 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 284 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 380 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 484 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 543 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 562 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 612 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00200943.fit XY2TRACESET: r1: Total rejected = 70307 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 35 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.98 1.09 1.03 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 52105 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 28 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.98 1.09 1.03 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 0 bright pixels in extracted flat sdR-r1-00200943.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00200943.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00200944.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 4.05489 3.21574 3.27332 3.33997 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000275046 MDRP_CALIB: r1: Arc sdR-r1-00200944.fit paired with flat sdR-r1-00200943.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 50633 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1165 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 471 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 174 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 72 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 36 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 15 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 6 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 52574 MDRP_CALIB: r1: Shifting traces with match_trace -0.0310059 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 21 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774404 MDRP_FITARCIMAGE: r1: Best correlation = 0.774404 MDRP_FITARCIMAGE: r1: ASET = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89494 0.16331 -0.01856 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89502 0.16355 -0.01843 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769087 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89478 0.16376 -0.01856 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89470 0.16379 -0.01862 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771552 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16427 -0.01857 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89439 0.16403 -0.01863 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768831 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16438 -0.01870 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89415 0.16438 -0.01870 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770933 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89399 0.16483 -0.01871 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89391 0.16486 -0.01883 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768884 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16494 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16494 -0.01896 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768485 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16534 -0.01872 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89359 0.16510 -0.01884 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767618 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01873 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89343 0.16542 -0.01885 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769993 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16547 -0.01897 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768517 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16561 -0.01897 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770315 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89319 0.16550 -0.01886 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16574 -0.01897 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770040 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16564 -0.01898 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767085 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16561 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769578 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16571 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769283 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16545 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16545 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770288 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16539 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769929 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16494 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89367 0.16520 -0.01896 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771233 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89399 0.16483 -0.01877 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89399 0.16483 -0.01877 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769450 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16477 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89423 0.16475 -0.01870 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770034 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16427 -0.01863 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89447 0.16427 -0.01869 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772606 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89479 0.16416 -0.01862 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89471 0.16392 -0.01868 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.779133 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89510 0.16366 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89510 0.16366 -0.01849 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774062 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.2214714 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.33927632 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7587 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7501 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7415 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7334 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7241 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7172 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7118 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7127 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7143 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7157 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7168 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 7124 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.32354e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 5.12602e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.17766e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.13930e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.07656e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.14644e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.38813e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.72412e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.10366e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 2.25273e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.96450e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.38030e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.14887e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.37496e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.02178e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 9.70964e-07 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 6.75881e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 7.95894e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.50247e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 8.84509e-07 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.22737e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.42890e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 2.01208e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 2.15214e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 8.12370e-07 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.00320e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.16946e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.01718e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.17302e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.59426e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.03100e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.08309e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.01337e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.76355e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.79350e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.07009e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.14210e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.15439e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.55213e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.04161e-05 MDRP_FITARCIMAGE: r1: Line 40 8103.6930 8.44775e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.61282e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.08090e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 8.49424e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.34639e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.05488e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.49704e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.62969e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.49126e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.50787e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.20488e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 8.12613e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.08914e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.37878e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 5.89004e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 2.88952e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.21200e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 4.81271e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.36085e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.29197e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 4.96620e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.11972e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 2.93875e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.08598e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.02685e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 128. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 14081 pixels XY2TRACESET: r1: Total rejected = 2878 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.06 1.01 1.04 0.99 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00200944.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00200943.fit paired with arc sdR-r1-00200944.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 232 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5151.4274 10347.126 MDRP_SUPERFLAT: r1: Creating superflat from 689 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 738701 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.05536 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56895 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8330/57183/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 786. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 789. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8330/slitmap-8330-57179-02.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00200943.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.11383 2.14514 2.05073 1.84589 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00200943.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00300 MDRP_CCPEAKS: b2: Traces shifted by -4.90000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.949397 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 708 MDRP_CCPEAKS: b2: Number of Missing Fibers: 6 MDRP_CCPEAKS: b2: Number of missing edge fibers: 4 MDRP_CCPEAKS: b2: Number of missing interior fibers: 2 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 6 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 387 417 491 498 585 714 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 2178 2322 2687 2723 3144 3771 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 386 416 490 497 584 713 MDRP_CCTRACEFIBERS: b2: Fiber 386 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 416 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 490 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 497 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 584 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 713 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00200943.fit XY2TRACESET: b2: Total rejected = 470798 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 2 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.96 0.96 1.02 0.98 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 366949 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 3 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.96 0.96 1.02 0.98 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00200943.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00200943.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00200944.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.06746 2.12040 2.02426 1.81485 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 5.11199e-05 MDRP_CALIB: b2: Arc sdR-b2-00200944.fit paired with flat sdR-b2-00200943.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 22712 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 337 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 68 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 23129 MDRP_CALIB: b2: Shifting traces with match_trace -0.0120850 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 5 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68643 0.19996 -0.02403 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.739460 MDRP_FITARCIMAGE: b2: Best correlation = 0.739460 MDRP_FITARCIMAGE: b2: ASET = 3.68643 0.19996 -0.02403 0.00128 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68894 0.19786 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68894 0.19759 -0.02395 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.791721 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19800 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68856 0.19800 -0.02384 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.792916 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68818 0.19853 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795830 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19867 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19867 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796349 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68750 0.19918 -0.02400 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797087 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19921 -0.02388 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68731 0.19925 -0.02400 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.801748 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19928 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19928 -0.02395 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799810 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68701 0.19935 -0.02395 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.793801 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68682 0.19956 -0.02402 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799377 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68663 0.19989 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68663 0.19963 -0.02402 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798336 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68663 0.19989 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68653 0.19993 -0.02397 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794930 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68643 0.19996 -0.02403 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794525 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68643 0.19970 -0.02403 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794811 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19996 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68633 0.19973 -0.02403 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794359 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19956 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68633 0.19986 -0.02403 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797003 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19956 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68633 0.19960 -0.02403 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795191 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68643 0.19956 -0.02391 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68643 0.19956 -0.02403 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797226 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68662 0.19909 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68662 0.19936 -0.02396 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794750 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68681 0.19903 -0.02378 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68672 0.19906 -0.02390 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798039 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68700 0.19856 -0.02371 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68691 0.19886 -0.02384 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794932 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68700 0.19855 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68700 0.19855 -0.02401 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801189 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68739 0.19802 -0.02364 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68729 0.19806 -0.02376 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794791 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.73686833 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 4923 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 4901 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4794 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 4817 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 4883 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5204 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5288 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5315 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5344 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5335 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5335 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 5.10787e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 2.22817e-05 Reject MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.11878e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 2.48146e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 2.77598e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.10619e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 7.84857e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 3.24596e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 3.60921e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 9.96193e-06 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 7.62299e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 5.38826e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.01921e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.57525e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 2.12176e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.99818e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 1.86484e-05 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 5.05923e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.16167e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.03405e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.07017e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.10116e-05 MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.16257e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.64931e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.57864e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 4.84225e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.39958e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.40853e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.08742e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 1.02210e-05 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 1.32761e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 1.18806e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 1.01229e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 8.16898e-07 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 1.00123e-06 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.67670e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 2.41037e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 4.04118e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 4.14176e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.82771e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.96280e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 3.99518e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.18242e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.05425e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 110. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 11667 pixels XY2TRACESET: b2: Total rejected = 1665 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.01 1.00 1.06 1.04 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00200944.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00200943.fit paired with arc sdR-b2-00200944.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3553.6475 6656.2669 MDRP_SUPERFLAT: b2: Creating superflat from 704 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1102047 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.09212 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56895 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8330/57183/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 717. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 718. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0083XX/8330/slitmap-8330-57179-02.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00200943.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.63421 2.80311 2.74367 2.74216 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00200943.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-02-56690.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00350 MDRP_CCPEAKS: r2: Traces shifted by -4.30000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.95612931 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 706 MDRP_CCPEAKS: r2: Number of Missing Fibers: 8 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 4 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 8 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 38 387 417 491 498 585 714 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 449 462 2176 2320 2687 2723 3147 3779 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 37 386 416 490 497 584 713 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 386 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 416 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 490 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 497 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 584 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 713 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00200943.fit XY2TRACESET: r2: Total rejected = 69712 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 137 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.98 0.98 1.01 1.06 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 38865 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 106 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.98 0.99 1.01 1.06 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 0 bright pixels in extracted flat sdR-r2-00200943.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00200943.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00200944.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.63541 2.79559 2.74053 2.73407 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000957745 MDRP_CALIB: r2: Arc sdR-r2-00200944.fit paired with flat sdR-r2-00200943.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 46717 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 1113 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 420 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 153 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 69 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 26 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 48503 MDRP_CALIB: r2: Shifting traces with match_trace -0.00402832 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 111 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16380 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89704 0.16380 -0.01860 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.776097 MDRP_FITARCIMAGE: r2: Best correlation = 0.776097 MDRP_FITARCIMAGE: r2: ASET = 3.89704 0.16380 -0.01860 0.00114 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89873 0.16162 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89873 0.16162 -0.01830 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765508 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89827 0.16218 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89835 0.16215 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768094 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89813 0.16263 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89813 0.16263 -0.01832 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.779032 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89781 0.16274 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89781 0.16274 -0.01833 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767952 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89766 0.16319 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89766 0.16319 -0.01834 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769447 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89751 0.16325 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89743 0.16327 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767668 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89735 0.16330 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89743 0.16354 -0.01835 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767147 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16375 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89728 0.16372 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768295 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16375 -0.01848 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89720 0.16375 -0.01842 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768447 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16380 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89704 0.16380 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768222 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16380 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89704 0.16380 -0.01854 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767720 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16381 -0.01848 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89704 0.16381 -0.01854 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767342 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89704 0.16379 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89712 0.16377 -0.01854 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766359 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16375 -0.01848 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89720 0.16375 -0.01848 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768629 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89720 0.16374 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89728 0.16371 -0.01853 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770272 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89735 0.16330 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89743 0.16354 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771185 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89750 0.16324 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89758 0.16321 -0.01846 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767719 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89782 0.16314 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89790 0.16311 -0.01833 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768800 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89797 0.16268 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89805 0.16265 -0.01839 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768393 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89829 0.16258 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89837 0.16255 -0.01831 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770527 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89859 0.16207 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89867 0.16204 -0.01830 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767437 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89889 0.16156 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89897 0.16180 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769799 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.2793987 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.39907603 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 7867 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 7826 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7798 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7727 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7644 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7449 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7369 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7323 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7356 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7367 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7386 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 7409 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 7213 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.14780e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.84845e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.43086e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.09435e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.23627e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.02961e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.49217e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.27448e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.13982e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.64967e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.80828e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.30167e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.10739e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.37427e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 9.25312e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 8.00804e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 6.95028e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.10484e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 8.86935e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 7.19805e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.49212e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.99007e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.36904e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.31106e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 2.17601e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.05957e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.22710e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.34849e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.27739e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.55544e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.73013e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.19651e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.17660e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.47070e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.53793e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.08163e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.05365e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.88914e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.77401e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 9.25407e-06 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 8.54718e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.02200e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.07546e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 8.00209e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.08647e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.10435e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 2.84846e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.51474e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.34980e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.46203e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.27401e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 8.31414e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.06068e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.16750e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 5.74185e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.41668e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.04460e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 5.18532e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.18792e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 2.60859e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.62331e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.25682e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.25373e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.08960e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.36018e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 129. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 12776 pixels XY2TRACESET: r2: Total rejected = 2545 MDRP_FITDISPERSION: r2: Median wavelength widths = 0.99 1.02 1.01 1.00 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00200944.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00200943.fit paired with arc sdR-r2-00200944.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 208 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5227.8790 10411.004 MDRP_SUPERFLAT: r2: Creating superflat from 697 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 723865 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.09902 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart02/56895 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8330/57183/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 776. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 778. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 2992. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.7 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 2993. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:14:05 2016