MDRP_REDUCE2D: Log file mgDiag2d-8439-57101.log opened Fri Mar 11 13:22:21 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp128 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8439-57101.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8439 at Fri Mar 11 13:22:25 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8439-57098-01.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8439/slitmap-8439-57098-01.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00196893.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06137 1.97122 1.95336 1.94504 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00196893.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00000 MDRP_CCPEAKS: b1: Traces shifted by -0.400002 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.972824 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 706 MDRP_CCPEAKS: b1: Number of Missing Fibers: 3 MDRP_CCPEAKS: b1: Number of missing edge fibers: 0 MDRP_CCPEAKS: b1: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 3 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 59 195 518 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 593 1260 2822 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 58 194 517 MDRP_CCTRACEFIBERS: b1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00196893.fit XY2TRACESET: b1: Total rejected = 500856 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 12 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.99 1.00 1.18 1.11 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 466757 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.99 1.00 1.18 1.11 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00196893.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00196893.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00196894.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.02159 1.94589 1.95971 1.86930 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 4.25109e-05 MDRP_CALIB: b1: Arc sdR-b1-00196894.fit paired with flat sdR-b1-00196893.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 32878 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 296 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 98 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 42 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 14 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 5 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 8 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 9 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 33342 MDRP_CALIB: b1: Shifting traces with match_trace -0.0136719 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 14 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02398 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20256 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.733901 MDRP_FITARCIMAGE: b1: Best correlation = 0.733901 MDRP_FITARCIMAGE: b1: ASET = 3.68022 0.20256 -0.02410 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68172 0.20084 -0.02418 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.796163 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20131 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68152 0.20105 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794376 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02401 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68123 0.20142 -0.02413 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791609 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68102 0.20162 -0.02414 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788509 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02396 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20195 -0.02408 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789826 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68063 0.20203 -0.02415 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788425 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20220 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791221 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02397 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20249 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785847 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787279 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787186 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20284 -0.02422 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.786710 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68011 0.20300 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68011 0.20274 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786428 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20284 -0.02422 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.785784 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785098 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786441 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02416 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787773 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20239 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68062 0.20216 -0.02415 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786382 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02402 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20196 -0.02414 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788917 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68112 0.20185 -0.02395 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68102 0.20188 -0.02408 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.788063 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02395 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68123 0.20168 -0.02407 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.787382 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20131 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68142 0.20135 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792775 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68172 0.20111 -0.02418 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.791883 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Number of arc lines: 45 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 5795 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4873 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4825 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4873 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4883 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4971 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4997 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 5014 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 5027 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5056 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5056 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 5.84018e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.17684e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 2.92818e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 3.00618e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.16619e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 8.29247e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.98813e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 3.64560e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.05087e-05 MDRP_FITARCIMAGE: b1: Line 11 4662.3520 6.01376e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.36950e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.48007e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.73234e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.91363e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 8.17341e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.68664e-05 Reject MDRP_FITARCIMAGE: b1: Line 18 5400.5616 5.15818e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.01162e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.08850e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.10123e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.15412e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.12713e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.40007e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.34136e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.61039e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.19081e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.13651e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 9.68027e-07 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.83618e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.54776e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.00647e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 8.73864e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 7.57906e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.00643e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.68729e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 3.08792e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 4.02786e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 2.24417e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.80090e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.39347e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 3.77431e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 4.52047e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 3.63424e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 106. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8515 pixels XY2TRACESET: b1: Total rejected = 1743 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.02 1.04 1.08 1.11 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00196894.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00196893.fit paired with arc sdR-b1-00196894.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 11 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3485.5989 6578.5054 MDRP_SUPERFLAT: b1: Creating superflat from 701 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1061030 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.07541 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8439/57101/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 707. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 718. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8439/slitmap-8439-57098-01.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00196893.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.70979 3.14914 3.22801 3.20591 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00196893.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00000 MDRP_CCPEAKS: r1: Traces shifted by -0.500000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97491991 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 701 MDRP_CCPEAKS: r1: Number of Missing Fibers: 8 MDRP_CCPEAKS: r1: Number of missing edge fibers: 0 MDRP_CCPEAKS: r1: Number of missing interior fibers: 8 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 8 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 59 195 205 229 230 518 544 562 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 588 1261 1305 1424 1429 2829 2946 3038 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 58 194 204 228 229 517 543 561 MDRP_CCTRACEFIBERS: r1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 204 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 228 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 543 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 561 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00196893.fit XY2TRACESET: r1: Total rejected = 77375 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 33 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.07 1.00 1.14 1.07 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 51963 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 12 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.07 1.00 1.14 1.07 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 1 bright pixels in extracted flat sdR-r1-00196893.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00196893.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00196894.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.71637 3.14845 3.20845 3.20745 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000334578 MDRP_CALIB: r1: Arc sdR-r1-00196894.fit paired with flat sdR-r1-00196893.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 63437 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1129 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 425 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 143 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 56 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 26 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 13 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 7 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 65241 MDRP_CALIB: r1: Shifting traces with match_trace -0.0189209 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 49 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16546 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774220 MDRP_FITARCIMAGE: r1: Best correlation = 0.774220 MDRP_FITARCIMAGE: r1: ASET = 3.89448 0.16546 -0.01893 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89605 0.16293 -0.01858 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89613 0.16317 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767504 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89590 0.16339 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89590 0.16339 -0.01852 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773635 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16388 -0.01871 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89567 0.16386 -0.01859 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768902 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89527 0.16399 -0.01872 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89535 0.16423 -0.01866 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770681 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16445 -0.01873 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16445 -0.01873 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769777 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16450 -0.01868 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89495 0.16477 -0.01874 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768996 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16495 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89480 0.16495 -0.01886 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768969 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16501 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770115 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16530 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767062 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16533 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769210 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16546 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766364 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89440 0.16522 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767479 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16520 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767152 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16530 -0.01887 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768336 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16506 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16504 -0.01887 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767070 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16496 -0.01868 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16499 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770609 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89496 0.16490 -0.01880 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89488 0.16466 -0.01886 0.00114 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768167 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16444 -0.01879 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16444 -0.01879 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771249 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89544 0.16435 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89536 0.16437 -0.01866 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769430 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16389 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16389 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771099 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89591 0.16379 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89583 0.16355 -0.01864 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770871 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16328 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89614 0.16330 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772211 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.1949077 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.33290272 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7942 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7906 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7827 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7732 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7672 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7611 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7560 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7552 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7562 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7580 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7600 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 7595 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 7516 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.21451e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.68654e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.10636e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.12736e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.08019e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.10946e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.02771e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.41420e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.15702e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 2.02890e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.90104e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.46117e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.10022e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.85746e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.51898e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.23626e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.21271e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.98911e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.41657e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.23931e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.17373e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.35403e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.88517e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 2.03797e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 7.48625e-07 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 2.98485e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.12000e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.05115e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.29072e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.52532e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.00317e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.00411e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 9.93823e-07 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.49087e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.67817e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.11214e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.11251e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 5.90263e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.19473e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.12128e-05 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 9.60402e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.58848e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 6.94194e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 9.53949e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.35907e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.13276e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.56927e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.59917e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.16063e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.61599e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.46334e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 9.93431e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.17442e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.33100e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.00201e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 2.83815e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.47822e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.60604e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 5.01684e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.29561e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 6.68121e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.13774e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.39493e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.20489e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.02535e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 129. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 13714 pixels XY2TRACESET: r1: Total rejected = 2602 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.08 1.03 1.06 1.02 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00196894.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00196893.fit paired with arc sdR-r1-00196894.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 114 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5170.5320 10367.372 MDRP_SUPERFLAT: r1: Creating superflat from 684 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 723802 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.06962 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8439/57101/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 792. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 794. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8439/slitmap-8439-57098-01.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00196893.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.96244 2.13295 2.04360 1.75954 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00196893.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00000 MDRP_CCPEAKS: b2: Traces shifted by -0.500000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.969223 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 711 MDRP_CCPEAKS: b2: Number of Missing Fibers: 3 MDRP_CCPEAKS: b2: Number of missing edge fibers: 3 MDRP_CCPEAKS: b2: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 3 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 1 258 515 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 305 1553 2815 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 0 257 514 MDRP_CCTRACEFIBERS: b2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00196893.fit XY2TRACESET: b2: Total rejected = 459852 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.98 0.96 1.03 1.00 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 389972 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.98 0.96 1.03 1.00 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00196893.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00196893.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00196894.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.92399 2.09482 2.03681 1.72646 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 9.70744e-05 MDRP_CALIB: b2: Arc sdR-b2-00196894.fit paired with flat sdR-b2-00196893.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 24106 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 264 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 48 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 6 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 24425 MDRP_CALIB: b2: Shifting traces with match_trace -0.00659180 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 7 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19948 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19951 -0.02393 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.743287 MDRP_FITARCIMAGE: b2: Best correlation = 0.743287 MDRP_FITARCIMAGE: b2: ASET = 3.68770 0.19951 -0.02393 0.00126 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.69011 0.19744 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.69011 0.19744 -0.02380 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795921 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68972 0.19758 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68962 0.19788 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796317 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68934 0.19812 -0.02382 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68934 0.19812 -0.02388 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.800811 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68915 0.19819 -0.02371 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68905 0.19850 -0.02383 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799982 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68877 0.19873 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68877 0.19873 -0.02396 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.804370 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68857 0.19880 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68847 0.19883 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799441 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19887 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68838 0.19887 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.803065 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19933 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68819 0.19907 -0.02398 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797658 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19940 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19940 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799404 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19941 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19945 -0.02387 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797529 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19948 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19951 -0.02393 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.799398 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19948 -0.02375 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19951 -0.02387 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.797916 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797182 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19954 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799513 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19954 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19928 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801071 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19914 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800390 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19914 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.801007 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19911 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.800118 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68798 0.19861 -0.02368 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68788 0.19865 -0.02381 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799460 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68798 0.19860 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68798 0.19860 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.802564 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68817 0.19813 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68817 0.19813 -0.02398 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.790890 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68836 0.19807 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68836 0.19807 -0.02397 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796275 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.60343673 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 4912 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 4870 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4801 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 4940 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 4965 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5050 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5062 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5090 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5114 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5140 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5140 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 4.24965e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.08408e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.50584e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.79476e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.20786e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 7.82678e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.87369e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 4.44245e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.03408e-05 MDRP_FITARCIMAGE: b2: Line 11 4662.3520 6.17316e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 6.05552e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.23373e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.67120e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 2.15642e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.93284e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 1.86069e-05 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 5.03019e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.13238e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.02298e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.11181e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.07528e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.08931e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.34689e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.49742e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 4.97092e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.14621e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.17635e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.31526e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 1.01941e-05 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.38689e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.19500e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 1.59679e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.00675e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 1.00352e-06 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.22718e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.25710e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 1.93066e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.32184e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.75637e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.55802e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 3.63506e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.26575e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.52155e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 114. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 9854 pixels XY2TRACESET: b2: Total rejected = 1918 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.02 0.99 1.08 1.06 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00196894.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00196893.fit paired with arc sdR-b2-00196894.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3563.6774 6670.3299 MDRP_SUPERFLAT: b2: Creating superflat from 708 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1106645 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.09381 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8439/57101/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 728. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 729. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8439/slitmap-8439-57098-01.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00196893.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.80906 2.82856 2.72789 2.85732 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00196893.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00000 MDRP_CCPEAKS: r2: Traces shifted by -0.299995 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.96052365 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 707 MDRP_CCPEAKS: r2: Number of Missing Fibers: 7 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 7 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 1 36 37 38 39 258 515 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 290 449 454 458 463 1549 2815 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 0 35 36 37 38 257 514 MDRP_CCTRACEFIBERS: r2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00196893.fit XY2TRACESET: r2: Total rejected = 64951 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 115 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.98 1.03 1.07 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 36727 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 106 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.98 1.03 1.07 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 12 bright pixels in extracted flat sdR-r2-00196893.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00196893.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00196894.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.79583 2.84177 2.72965 2.86647 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000753124 MDRP_CALIB: r2: Arc sdR-r2-00196894.fit paired with flat sdR-r2-00196893.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 47734 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 877 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 293 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 103 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 49 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 18 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 9 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 49086 MDRP_CALIB: r2: Shifting traces with match_trace -0.00390625 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 132 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16347 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16371 -0.01845 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.777409 MDRP_FITARCIMAGE: r2: Best correlation = 0.777409 MDRP_FITARCIMAGE: r2: ASET = 3.89808 0.16371 -0.01845 0.00120 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89952 0.16135 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89960 0.16132 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764275 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89922 0.16186 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89930 0.16183 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769072 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89908 0.16231 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89900 0.16234 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769807 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89876 0.16242 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89876 0.16242 -0.01830 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765666 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89862 0.16287 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89862 0.16287 -0.01831 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768709 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16293 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89838 0.16295 -0.01843 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767752 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89830 0.16298 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89838 0.16322 -0.01831 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767114 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89823 0.16340 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767725 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16346 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767262 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16347 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16347 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765107 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89800 0.16375 -0.01845 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765053 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16349 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16373 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767224 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16348 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89808 0.16372 -0.01845 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766289 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16343 -0.01850 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767529 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89824 0.16341 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768702 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16337 -0.01856 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89839 0.16334 -0.01843 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764970 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16293 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89854 0.16317 -0.01837 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768404 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89878 0.16282 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89878 0.16282 -0.01830 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768804 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89900 0.16260 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768052 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89924 0.16226 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89924 0.16226 -0.01828 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767313 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89954 0.16175 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767349 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89985 0.16164 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89985 0.16138 -0.01826 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765499 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.3562149 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.37056653 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 8108 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 8020 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7946 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7905 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7767 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7648 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7601 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7561 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7576 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7581 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7606 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 7596 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 7433 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.44083e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.18030e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.09916e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.10222e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.25841e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.08061e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.39489e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.12877e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.08305e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.17845e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.06314e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.27318e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.10750e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.51344e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 9.28462e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 9.35430e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.61395e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 9.19750e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.46079e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 7.44453e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.60280e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.72871e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.47497e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.39267e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.95547e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 2.97204e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.17865e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.31833e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.42609e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.86576e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.91936e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.23143e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.20391e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.38287e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.53354e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.07434e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.14253e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.67117e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.13472e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 1.05105e-05 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 9.60271e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.81789e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.63821e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 9.70763e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 4.10025e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.08937e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.59064e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 2.15181e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.14851e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.57413e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.71296e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 9.21070e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.18717e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.34269e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.35478e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.39960e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.08356e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 4.99400e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.47205e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.04095e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.55929e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.14282e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.26725e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.13792e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.21268e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 133. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 12867 pixels XY2TRACESET: r2: Total rejected = 3042 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.01 1.02 1.03 1.02 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00196894.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00196893.fit paired with arc sdR-r2-00196894.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 482 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5242.2365 10428.046 MDRP_SUPERFLAT: r2: Creating superflat from 703 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 710431 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.08403 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8439/57101/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 811. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 812. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 3054. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.8 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 3058. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:13:19 2016