MDRP_REDUCE2D: Log file mgDiag2d-8448-57124.log opened Fri Mar 11 13:22:49 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp132 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8448-57124.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8448 at Fri Mar 11 13:22:50 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8448-57122-01.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8448/slitmap-8448-57122-01.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 1 MDRP_CALIB: b1: Reading flat sdR-b1-00198106.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06314 1.97029 1.94536 1.96240 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00198106.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 0.999001 MDRP_CCPEAKS: b1: Traces shifted by 2.80000 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.965493 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 706 MDRP_CCPEAKS: b1: Number of Missing Fibers: 3 MDRP_CCPEAKS: b1: Number of missing edge fibers: 3 MDRP_CCPEAKS: b1: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 3 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 55 87 125 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 570 725 894 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 54 86 124 MDRP_CCTRACEFIBERS: b1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00198106.fit XY2TRACESET: b1: Total rejected = 501496 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 16 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.97 0.99 1.15 1.08 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 457861 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 14 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.98 0.99 1.15 1.08 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00198106.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00198106.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 1 MDRP_CALIB: b1: Reading arc sdR-b1-00198107.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.03002 1.92863 1.93876 1.99474 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 3.87110e-05 MDRP_CALIB: b1: Arc sdR-b1-00198107.fit paired with flat sdR-b1-00198106.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 31018 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 232 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 64 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 6 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 31332 MDRP_CALIB: b1: Shifting traces with match_trace -0.0134277 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 19 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20336 -0.02427 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.736401 MDRP_FITARCIMAGE: b1: Best correlation = 0.736401 MDRP_FITARCIMAGE: b1: ASET = 3.67873 0.20336 -0.02427 0.00126 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68054 0.20126 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68044 0.20130 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.799909 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68014 0.20180 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68014 0.20154 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791302 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67994 0.20187 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67984 0.20191 -0.02423 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.795744 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67954 0.20242 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67954 0.20215 -0.02424 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789851 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67934 0.20249 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67934 0.20249 -0.02425 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.791028 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67914 0.20256 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67914 0.20282 -0.02425 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.789810 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67893 0.20303 -0.02426 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.786046 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787340 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787646 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67873 0.20310 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67873 0.20310 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784709 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67872 0.20350 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67872 0.20323 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786550 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67872 0.20350 -0.02415 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67872 0.20323 -0.02427 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786985 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67883 0.20306 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784674 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67893 0.20303 -0.02414 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67893 0.20303 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785328 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67913 0.20296 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67903 0.20299 -0.02426 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789571 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67933 0.20288 -0.02401 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67923 0.20291 -0.02413 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.784156 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67933 0.20289 -0.02413 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67933 0.20289 -0.02425 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.785604 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67973 0.20235 -0.02412 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67964 0.20265 -0.02424 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.788254 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.67993 0.20227 -0.02411 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.67993 0.20227 -0.02423 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.788800 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68013 0.20220 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68013 0.20194 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788186 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68053 0.20166 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68053 0.20166 -0.02421 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.789623 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68094 0.20112 -0.02402 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68084 0.20142 -0.02414 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.786353 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.78724542 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4719 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4680 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4580 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4610 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4936 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4940 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 5013 MDRP_FITARCIMAGE: b1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 5036 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 5081 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5117 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 10 XY2TRACESET: b1: Total rejected = 5157 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5157 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 5.09089e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.11542e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 2.71363e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.47743e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.13994e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 8.38083e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.59325e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 3.71175e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.13976e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 6.76412e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.05595e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.35982e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.55722e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.90470e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 7.99218e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 1.84211e-05 Reject MDRP_FITARCIMAGE: b1: Line 18 5400.5616 4.76806e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.01308e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.04991e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.14454e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.07904e-05 Reject MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.11385e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.41839e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.37182e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 5.11868e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.19691e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.11546e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 9.74533e-07 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.91938e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.36711e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 9.68242e-07 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 9.32706e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 7.63144e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 9.67289e-07 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.38229e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 2.90059e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 3.79676e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 2.00085e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.62095e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.44288e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 4.09942e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 3.89039e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 3.79315e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 105. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9745 pixels XY2TRACESET: b1: Total rejected = 850 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.00 1.02 1.06 1.08 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00198107.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b1: Flat sdR-b1-00198106.fit paired with arc sdR-b1-00198107.fit EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 17 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3471.2661 6569.2561 MDRP_SUPERFLAT: b1: Creating superflat from 706 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1063197 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.05260 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8448/57124/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 711. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 717. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8448/slitmap-8448-57122-01.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 1 MDRP_CALIB: r1: Reading flat sdR-r1-00198106.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.71162 3.12250 3.20705 3.12863 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00198106.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 0.999001 MDRP_CCPEAKS: r1: Traces shifted by 3.20000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.96280079 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 701 MDRP_CCPEAKS: r1: Number of Missing Fibers: 8 MDRP_CCPEAKS: r1: Number of missing edge fibers: 3 MDRP_CCPEAKS: r1: Number of missing interior fibers: 5 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 8 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 55 87 125 206 230 231 545 563 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 566 722 893 1306 1425 1430 2944 3038 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 54 86 124 205 229 230 544 562 MDRP_CCTRACEFIBERS: r1: Fiber 54 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 86 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 124 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 205 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 230 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 544 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 562 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00198106.fit XY2TRACESET: r1: Total rejected = 71399 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 90 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 0.98 1.12 1.06 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 56753 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 86 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.05 0.98 1.12 1.06 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 14 bright pixels in extracted flat sdR-r1-00198106.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00198106.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 1 MDRP_CALIB: r1: Reading arc sdR-r1-00198107.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.72433 3.12016 3.18321 3.14349 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000419017 MDRP_CALIB: r1: Arc sdR-r1-00198107.fit paired with flat sdR-r1-00198106.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 63270 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1085 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 411 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 162 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 66 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 30 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 13 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 10 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 9 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 65049 MDRP_CALIB: r1: Shifting traces with match_trace -0.0169678 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 43 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.776614 MDRP_FITARCIMAGE: r1: Best correlation = 0.776614 MDRP_FITARCIMAGE: r1: ASET = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89510 0.16326 -0.01855 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89518 0.16350 -0.01849 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770523 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89478 0.16376 -0.01862 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89478 0.16376 -0.01868 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773486 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16427 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89455 0.16424 -0.01863 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770983 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16437 -0.01876 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89423 0.16461 -0.01870 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769588 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89399 0.16483 -0.01871 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89391 0.16486 -0.01883 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770443 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16494 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89375 0.16518 -0.01890 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768992 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16534 -0.01872 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89359 0.16537 -0.01884 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766584 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01879 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89343 0.16542 -0.01891 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770028 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16561 -0.01897 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771405 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89319 0.16564 -0.01898 0.00121 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766718 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766977 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89327 0.16587 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767633 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89335 0.16585 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89335 0.16585 -0.01897 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767727 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16579 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 186 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89343 0.16555 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769901 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89351 0.16539 -0.01885 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89351 0.16539 -0.01897 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769659 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89367 0.16534 -0.01884 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89375 0.16531 -0.01890 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770662 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89399 0.16523 -0.01871 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89391 0.16526 -0.01883 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769568 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89415 0.16477 -0.01882 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89415 0.16477 -0.01894 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768579 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89447 0.16466 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89447 0.16466 -0.01875 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.772340 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89479 0.16416 -0.01856 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89471 0.16419 -0.01868 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771174 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16405 -0.01861 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89511 0.16379 -0.01861 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771839 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89542 0.16354 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89542 0.16354 -0.01860 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.777588 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.3614165 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.32908806 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7479 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7440 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7398 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7342 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7270 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7128 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7099 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7089 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7110 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7130 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7159 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 7049 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.13564e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 5.13203e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.09939e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.23014e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.20609e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.13560e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.10658e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.42539e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.18314e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.90982e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.95796e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.54873e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.15991e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.77380e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.31641e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.22144e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.01929e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.57882e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.40268e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 9.89565e-07 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.19221e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.36918e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.87047e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.91629e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 8.73633e-07 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 2.94159e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.29036e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.08209e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.22674e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.45411e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.13220e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.08027e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.00811e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.56729e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.58383e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.13566e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.13988e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 5.98922e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.73195e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 1.08475e-05 MDRP_FITARCIMAGE: r1: Line 40 8103.6930 8.25851e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 3.14570e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.44871e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 8.75186e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.78582e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.06532e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.86116e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.77083e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.17998e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.44737e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.35430e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 8.79297e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.05979e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.48349e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.39172e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 2.83751e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.18061e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 4.77421e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.65599e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.33942e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 4.81993e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 2.91769e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 2.61113e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.11503e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.05713e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 131. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 13916 pixels XY2TRACESET: r1: Total rejected = 2882 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.07 1.02 1.05 1.01 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00198107.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r1: Flat sdR-r1-00198106.fit paired with arc sdR-r1-00198107.fit EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 152 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5157.7876 10355.438 MDRP_SUPERFLAT: r1: Creating superflat from 688 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 730121 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.04662 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8448/57124/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 812. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 814. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8448/slitmap-8448-57122-01.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 1 MDRP_CALIB: b2: Reading flat sdR-b2-00198106.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.97483 2.12756 2.06286 1.75058 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00198106.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 0.999001 MDRP_CCPEAKS: b2: Traces shifted by 3.90000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.978997 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 712 MDRP_CCPEAKS: b2: Number of Missing Fibers: 2 MDRP_CCPEAKS: b2: Number of missing edge fibers: 2 MDRP_CCPEAKS: b2: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 2 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 354 714 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 2016 3766 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 353 713 MDRP_CCTRACEFIBERS: b2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 713 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00198106.fit XY2TRACESET: b2: Total rejected = 477291 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.96 0.95 1.01 0.99 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 366601 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.96 0.95 1.01 0.99 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00198106.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00198106.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 1 MDRP_CALIB: b2: Reading arc sdR-b2-00198107.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.94352 2.04661 2.03220 1.73548 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 8.25281e-05 MDRP_CALIB: b2: Arc sdR-b2-00198107.fit paired with flat sdR-b2-00198106.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 22468 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 307 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 56 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 13 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 22848 MDRP_CALIB: b2: Shifting traces with match_trace -0.0134277 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 67 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19975 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19979 -0.02402 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.743312 MDRP_FITARCIMAGE: b2: Best correlation = 0.743312 MDRP_FITARCIMAGE: b2: ASET = 3.68692 0.19979 -0.02402 0.00124 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68953 0.19766 -0.02363 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68943 0.19770 -0.02376 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.787429 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68894 0.19786 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68894 0.19812 -0.02395 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.791656 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19840 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68856 0.19840 -0.02396 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.797956 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68837 0.19847 -0.02373 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68827 0.19877 -0.02385 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795712 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19900 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19900 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.801873 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68770 0.19911 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800421 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68760 0.19914 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68760 0.19914 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799787 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68741 0.19961 -0.02388 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68741 0.19935 -0.02400 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794116 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19968 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68721 0.19968 -0.02401 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.795122 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19969 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68712 0.19972 -0.02395 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.793253 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19975 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68702 0.19975 -0.02401 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.794134 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19975 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19979 -0.02396 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.796691 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68702 0.19976 -0.02377 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19979 -0.02390 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794274 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68682 0.19982 -0.02390 0.00124 ARCFIT_ITER: b2: Searching lags from -154 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19952 -0.02402 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795406 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68692 0.19965 -0.02402 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.798018 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68701 0.19935 -0.02389 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68701 0.19935 -0.02401 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798341 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68721 0.19929 -0.02377 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68711 0.19932 -0.02389 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.794068 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19882 -0.02376 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68730 0.19912 -0.02388 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.796537 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68740 0.19881 -0.02388 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68740 0.19881 -0.02400 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798359 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68759 0.19874 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68759 0.19874 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799382 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68797 0.19821 -0.02368 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68788 0.19825 -0.02381 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795280 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68817 0.19813 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68817 0.19787 -0.02386 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.794503 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.66909832 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 4712 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 4584 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4608 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 4947 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 4951 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5034 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5074 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5104 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5123 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5151 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5151 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 3.56329e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 2.57235e-05 Reject MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.12661e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.28431e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.44129e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.07254e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 6.87957e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.71106e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 4.29293e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.08174e-05 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 6.68282e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 6.37636e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.47866e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.55973e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 1.92880e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.52539e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.63233e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 1.99509e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 1.07689e-05 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.09442e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.04215e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.05355e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.33131e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.68761e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 4.58909e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.16708e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.13787e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.52511e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 1.01238e-05 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.38942e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.45763e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 1.77857e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.24346e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 8.93905e-07 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.13268e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.18161e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 1.96905e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.13589e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.67982e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.59490e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 3.64868e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.09404e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.45535e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 112. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 11509 pixels XY2TRACESET: b2: Total rejected = 868 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.01 0.98 1.06 1.03 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00198107.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: b2: Flat sdR-b2-00198106.fit paired with arc sdR-b2-00198107.fit EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3558.3329 6662.8665 MDRP_SUPERFLAT: b2: Creating superflat from 708 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1098008 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.07587 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8448/57124/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 737. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 738. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0084XX/8448/slitmap-8448-57122-01.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 1 MDRP_CALIB: r2: Reading flat sdR-r2-00198106.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.81479 2.83590 2.73235 2.85921 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00198106.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-01-56835.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 0.999001 MDRP_CCPEAKS: r2: Traces shifted by 4.00000 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.97124749 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 707 MDRP_CCPEAKS: r2: Number of Missing Fibers: 7 MDRP_CCPEAKS: r2: Number of missing edge fibers: 3 MDRP_CCPEAKS: r2: Number of missing interior fibers: 4 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 7 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 35 36 37 38 39 354 714 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 447 451 456 460 465 2013 3774 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 34 35 36 37 38 353 713 MDRP_CCTRACEFIBERS: r2: Fiber 34 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 353 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 713 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00198106.fit XY2TRACESET: r2: Total rejected = 65569 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 1034 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.97 0.99 1.01 1.06 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 36879 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 730 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.97 0.98 1.01 1.06 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 0 bright pixels in extracted flat sdR-r2-00198106.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00198106.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 1 MDRP_CALIB: r2: Reading arc sdR-r2-00198107.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.80400 2.82900 2.72398 2.86104 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000618045 MDRP_CALIB: r2: Arc sdR-r2-00198107.fit paired with flat sdR-r2-00198106.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 54044 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 956 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 353 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 122 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 48 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 29 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 55565 MDRP_CALIB: r2: Shifting traces with match_trace -0.0114746 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 405 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16369 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16393 -0.01853 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.778797 MDRP_FITARCIMAGE: r2: Best correlation = 0.778797 MDRP_FITARCIMAGE: r2: ASET = 3.89744 0.16393 -0.01853 0.00122 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89905 0.16151 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89905 0.16151 -0.01829 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766570 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89859 0.16207 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89867 0.16204 -0.01830 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770549 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89845 0.16253 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89845 0.16253 -0.01831 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770608 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89813 0.16263 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89821 0.16287 -0.01832 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767680 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89798 0.16309 -0.01845 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89798 0.16309 -0.01833 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770218 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89766 0.16318 -0.01858 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89774 0.16316 -0.01846 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768094 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89768 0.16359 -0.01846 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89768 0.16333 -0.01840 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768546 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16364 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89760 0.16362 -0.01840 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769753 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16367 -0.01853 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769181 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16369 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16366 -0.01847 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766781 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16369 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16393 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769301 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89736 0.16369 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89744 0.16393 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768729 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16365 -0.01847 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89752 0.16391 -0.01847 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767957 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89752 0.16364 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89752 0.16364 -0.01859 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768580 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89768 0.16358 -0.01858 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89776 0.16356 -0.01846 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768813 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89784 0.16353 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89792 0.16350 -0.01845 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769580 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89798 0.16308 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89814 0.16329 -0.01838 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768922 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89830 0.16297 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89838 0.16295 -0.01837 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770515 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89860 0.16247 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89868 0.16271 -0.01830 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.770163 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89892 0.16236 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771833 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89922 0.16186 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89922 0.16186 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768097 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89970 0.16170 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89962 0.16146 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767758 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.2755098 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.42154459 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 7828 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 7808 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7730 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7577 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7415 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7285 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7222 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7187 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7202 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7211 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7222 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 7233 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 7085 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.17154e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.48968e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.02645e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.11375e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.08447e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.12223e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.36771e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.23937e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.16498e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.33596e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.51736e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.48922e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.14054e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.49916e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 9.64937e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 8.67313e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.33887e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.74646e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.86371e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 7.40283e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.37515e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 2.15324e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.28975e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.41118e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.96920e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 3.14181e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.38219e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.39096e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.51056e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.69818e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.89401e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.24913e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.11234e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.47696e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.47945e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.09949e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.05219e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.82917e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 8.61905e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 9.58442e-06 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 8.94523e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.50042e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.44761e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 8.50268e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 3.75857e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.07609e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.00282e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 1.83393e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.22712e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.48905e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.26552e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 8.61585e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.04138e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.19998e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 6.23693e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.39679e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 2.73423e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 4.79231e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.49890e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 2.79829e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.44571e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.06934e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.19117e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.17881e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.16400e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 134. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 13237 pixels XY2TRACESET: r2: Total rejected = 2649 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.00 1.02 1.01 1.01 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00198107.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 1 MDRP_CALIB: r2: Flat sdR-r2-00198106.fit paired with arc sdR-r2-00198107.fit EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 7609 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5239.2084 10424.854 MDRP_SUPERFLAT: r2: Creating superflat from 703 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 708661 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.06804 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart01/56898 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8448/57124/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 824. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 825. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 3094. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1549.8 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 3096. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 14:14:24 2016