MDRP_REDUCE2D: Log file mgDiag2d-8606-57163.log opened Fri Mar 11 13:16:49 2016 MDRP_REDUCE2D: IDL version: x86_64 linux unix linux 7.1.1 Aug 21 2009 64 64 MDRP_REDUCE2D: UNAME: Linux kp121 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux MDRP_REDUCE2D: DISPLAY= MDRP_REDUCE2D: mangadrp version v1_5_4 MDRP_REDUCE2D: mangacore version v1_2_3 MDRP_REDUCE2D: idlutils version v5_5_23 MDRP_REDUCE2D: specflat version v1_26 MDRP_REDUCE2D: Plan file mgPlan2d-8606-57163.par MDRP_REDUCE2D: DOCAMS = b1 r1 b2 r2 MDRP_REDUCE2D: Begin plate 8606 at Fri Mar 11 13:16:50 2016 MDRP_REDUCE2D: Slitmap file = slitmap-8606-57156-02.par ML_READSLITMAP: b1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0086XX/8606/slitmap-8606-57156-02.par MDRP_REDUCE: b1: STARTING CALIBRATION--------------- MDRP_CALIB: b1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b1: Tracing flat # 1 of 2 MDRP_CALIB: b1: Reading flat sdR-b1-00200006.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06310 1.98361 1.95433 1.90782 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00200006.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00000 MDRP_CCPEAKS: b1: Traces shifted by -0.299995 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.980405 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 705 MDRP_CCPEAKS: b1: Number of Missing Fibers: 4 MDRP_CCPEAKS: b1: Number of missing edge fibers: 1 MDRP_CCPEAKS: b1: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 4 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 59 195 518 645 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 593 1260 2822 3435 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 58 194 517 644 MDRP_CCTRACEFIBERS: b1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 644 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00200006.fit XY2TRACESET: b1: Total rejected = 510332 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 5 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.94 0.97 1.04 1.06 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 480301 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 6 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.94 0.97 1.04 1.06 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 0 bright pixels in extracted flat sdR-b1-00200006.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00200006.fit MDRP_CALIB: b1: Tracing flat # 2 of 2 MDRP_CALIB: b1: Reading flat sdR-b1-00200011.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.05528 1.98904 1.92476 1.88877 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Tracing fibers in sdR-b1-00200011.fit ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: b1: Total Fibers: 709 MDRP_CCPEAKS: b1: Traces scaled by 1.00000 MDRP_CCPEAKS: b1: Traces shifted by 0.200005 ccd units MDRP_CCPEAKS: b1: Trace correlation = 0.976623 MDRP_CCPEAKS: b1: THIS PASS: MDRP_CCPEAKS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: b1: Number of peaks Found: 706 MDRP_CCPEAKS: b1: Number of Missing Fibers: 3 MDRP_CCPEAKS: b1: Number of missing edge fibers: 0 MDRP_CCPEAKS: b1: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: b1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: b1: TOTAL MISSING FIBERS: 3 MDRP_CCTRACEFIBERS: b1: MISSING FIBERS (1-indexed): 59 195 518 MDRP_CCTRACEFIBERS: b1: MISSING PEAKS 594 1261 2822 MDRP_CCTRACEFIBERS: b1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b1: Warning: Fixing traces: 58 194 517 MDRP_CCTRACEFIBERS: b1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b1: Fitting traces in sdR-b1-00200011.fit XY2TRACESET: b1: Total rejected = 501068 MDRP_CALIB: b1: Extracting flat with proftype= 1 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_ROW: b1: XCEN is not sorted or not separated by greater than 3 pixels. EXTRACT_IMAGE: b1: masked 7 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.03 1.05 pix (LL UL LR UR) ML_CCTWEAK: b1: Cross-correlating peaks up/down detector XY2TRACESET: b1: Total rejected = 483249 EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9 pixels MDRP_FITFLATWIDTH: b1: Median spatial widths = 0.93 0.97 1.03 1.05 pix (LL UL LR UR) MDRP_CALIB: b1: Using proftype= 1 MDRP_CALIB: b1: Found 1 bright pixels in extracted flat sdR-b1-00200011.fit MDRP_CALIB: b1: GOOD FLAT!, sdR-b1-00200011.fit MDRP_CALIB: b1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b1: Extracting arc # 1 of 2 MDRP_CALIB: b1: Reading arc sdR-b1-00200005.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.03968 1.93518 2.04090 1.88968 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 3.85329e-05 MDRP_CALIB: b1: Arc sdR-b1-00200005.fit paired with flat sdR-b1-00200006.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 32980 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 563 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 157 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 56 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 28 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 8 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 9 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 33793 MDRP_CALIB: b1: Shifting traces with match_trace -0.0358887 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 10 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20257 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.734789 MDRP_FITARCIMAGE: b1: Best correlation = 0.734789 MDRP_FITARCIMAGE: b1: ASET = 3.68022 0.20257 -0.02422 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68172 0.20084 -0.02418 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.794633 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20131 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68162 0.20101 -0.02412 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791521 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68132 0.20138 -0.02419 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792702 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68113 0.20145 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68103 0.20176 -0.02420 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.792221 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20196 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.793680 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20199 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68063 0.20230 -0.02421 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.789478 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20246 -0.02421 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.789561 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790131 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788917 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.786853 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20284 -0.02422 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.786162 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20284 -0.02422 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.786144 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68022 0.20284 -0.02422 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.785383 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785098 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68032 0.20253 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68032 0.20253 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788263 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787396 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20239 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68062 0.20243 -0.02421 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.788620 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68082 0.20223 -0.02420 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.788510 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68112 0.20185 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68102 0.20189 -0.02420 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.792533 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20138 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68123 0.20168 -0.02419 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.790952 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20131 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68152 0.20131 -0.02418 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.791213 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68192 0.20076 -0.02387 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68182 0.20107 -0.02399 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.786865 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.78805039 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4683 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4669 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4540 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4573 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4847 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4876 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4961 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 4973 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 4983 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5006 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5006 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 3.97029e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.15307e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 2.03956e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.22911e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.13795e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 7.78927e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.86798e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.40526e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.12001e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 7.12661e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.58528e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.52308e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.44334e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.95030e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 7.46146e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 18 5400.5616 4.89354e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.18797e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 9.85619e-06 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.11489e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.08376e-05 MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.09465e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.66418e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.63856e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 4.77188e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.36888e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.29328e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.16690e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.43475e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.31878e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.01924e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 9.53043e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 7.58605e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 9.37688e-07 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.55228e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 2.53747e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 3.27991e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.42685e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.75695e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.33862e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 4.36523e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 5.11075e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 3.95196e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 104. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8948 pixels XY2TRACESET: b1: Total rejected = 1302 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.00 1.05 1.07 1.10 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00200005.fit MDRP_CALIB: b1: Extracting arc # 2 of 2 MDRP_CALIB: b1: Reading arc sdR-b1-00200012.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.02896 1.94456 1.89919 1.86989 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz MDRP_CALIB: b1: Fraction of bad pixels in arc = 5.25449e-05 MDRP_CALIB: b1: Arc sdR-b1-00200012.fit paired with flat sdR-b1-00200011.fit MDRP_MATCH_TRACE: b1: Iteration: 0 Pixels Rejected: 33526 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 1 Pixels Rejected: 504 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 2 Pixels Rejected: 141 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 3 Pixels Rejected: 44 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 4 Pixels Rejected: 15 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 5 Pixels Rejected: 8 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 6 Pixels Rejected: 5 Finished? 0 MDRP_MATCH_TRACE: b1: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b1: Warning: Large number of pixels rejected! 34243 MDRP_CALIB: b1: Shifting traces with match_trace 0.00488281 MDRP_CALIB: b1: Extracting arc EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 13 pixels MDRP_CALIB: b1: Searching for initial wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 5 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b1: Combining rows 352 to 356 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68031 0.20293 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68031 0.20267 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.740446 MDRP_FITARCIMAGE: b1: Best correlation = 0.740446 MDRP_FITARCIMAGE: b1: ASET = 3.68031 0.20267 -0.02422 0.00120 MDRP_CALIB: b1: Searching for wavelength solution MDRP_FITARCIMAGE: b1: Setting ncoeff= 6 MDRP_FITARCIMAGE: b1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68192 0.20077 -0.02405 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68182 0.20081 -0.02417 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.795294 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20084 -0.02406 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68163 0.20114 -0.02418 0.00124 ARCFIT_GUESS: b1: Initial correlation = 0.792168 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68152 0.20130 -0.02388 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68142 0.20134 -0.02400 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790564 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68112 0.20185 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68112 0.20159 -0.02419 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.793246 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68092 0.20192 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.793350 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20239 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68072 0.20213 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.791135 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20239 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68062 0.20243 -0.02421 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.789997 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20246 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.790864 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788413 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02397 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20249 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.782233 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68031 0.20293 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68031 0.20267 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787471 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68031 0.20293 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68031 0.20267 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788065 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68031 0.20293 -0.02410 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 151 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68031 0.20267 -0.02422 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.787438 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02397 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20249 -0.02410 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.780669 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02403 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68042 0.20250 -0.02416 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.785151 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68052 0.20246 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68052 0.20246 -0.02421 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788209 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68072 0.20239 -0.02409 0.00124 ARCFIT_ITER: b1: Searching lags from -152 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68072 0.20239 -0.02421 0.00128 ARCFIT_GUESS: b1: Initial correlation = 0.788480 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68092 0.20192 -0.02408 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68092 0.20192 -0.02420 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.789537 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68112 0.20185 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68112 0.20185 -0.02419 0.00122 ARCFIT_GUESS: b1: Initial correlation = 0.792992 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68132 0.20178 -0.02407 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 152 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68132 0.20152 -0.02419 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.792162 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68172 0.20124 -0.02394 0.00124 ARCFIT_ITER: b1: Searching lags from -153 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68162 0.20127 -0.02406 0.00120 ARCFIT_GUESS: b1: Initial correlation = 0.788839 XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b1: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Searching about coefficients = 3.68192 0.20077 -0.02405 0.00124 ARCFIT_ITER: b1: Searching lags from -154 to 153 spaced 1 pixels XY2TRACESET: b1: Total rejected = 0 ARCFIT_GUESS: b1: Initial wavelength fit = 3.68182 0.20107 -0.02417 0.00126 ARCFIT_GUESS: b1: Initial correlation = 0.792966 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Iterating flux-weighted centers MDRP_FITARCIMAGE: b1: Discarding line 2, at 3654.8390 Ang: RMS= 0.74483160 pix MDRP_FITARCIMAGE: b1: Number of arc lines: 44 MDRP_FITARCIMAGE: b1: Iteration 0 XY2TRACESET: b1: Total rejected = 4789 MDRP_FITARCIMAGE: b1: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b1: Iteration 1 XY2TRACESET: b1: Total rejected = 4745 MDRP_FITARCIMAGE: b1: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b1: Iteration 2 XY2TRACESET: b1: Total rejected = 4596 MDRP_FITARCIMAGE: b1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b1: Iteration 3 XY2TRACESET: b1: Total rejected = 4621 MDRP_FITARCIMAGE: b1: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b1: Iteration 4 XY2TRACESET: b1: Total rejected = 4880 MDRP_FITARCIMAGE: b1: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b1: Iteration 5 XY2TRACESET: b1: Total rejected = 4905 MDRP_FITARCIMAGE: b1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b1: Iteration 6 XY2TRACESET: b1: Total rejected = 4907 MDRP_FITARCIMAGE: b1: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b1: Iteration 7 XY2TRACESET: b1: Total rejected = 5009 MDRP_FITARCIMAGE: b1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b1: Iteration 8 XY2TRACESET: b1: Total rejected = 5045 MDRP_FITARCIMAGE: b1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b1: Iteration 9 XY2TRACESET: b1: Total rejected = 5077 MDRP_FITARCIMAGE: b1: Iterations done XY2TRACESET: b1: Total rejected = 5077 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Line 0 3610.5080 3.99553e-07 MDRP_FITARCIMAGE: b1: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b1: Line 3 3983.8390 1.11999e-05 Reject MDRP_FITARCIMAGE: b1: Line 4 4046.5720 2.16389e-06 MDRP_FITARCIMAGE: b1: Line 5 4077.8380 2.35582e-06 MDRP_FITARCIMAGE: b1: Line 6 4306.6720 1.09495e-05 Reject MDRP_FITARCIMAGE: b1: Line 7 4339.2200 7.99667e-06 MDRP_FITARCIMAGE: b1: Line 8 4347.5060 2.86458e-06 MDRP_FITARCIMAGE: b1: Line 9 4358.3370 4.17195e-06 MDRP_FITARCIMAGE: b1: Line 10 4412.9890 1.07938e-05 Reject MDRP_FITARCIMAGE: b1: Line 11 4662.3520 7.02961e-06 MDRP_FITARCIMAGE: b1: Line 12 4678.1490 3.56028e-06 MDRP_FITARCIMAGE: b1: Line 13 4799.9120 2.75409e-06 MDRP_FITARCIMAGE: b1: Line 14 4916.0700 3.46978e-06 MDRP_FITARCIMAGE: b1: Line 15 5085.8220 1.90903e-06 MDRP_FITARCIMAGE: b1: Line 16 5330.7775 7.84251e-06 MDRP_FITARCIMAGE: b1: Line 17 5341.0938 0.00461395 Reject-offset MDRP_FITARCIMAGE: b1: Line 18 5400.5616 4.60816e-06 MDRP_FITARCIMAGE: b1: Line 19 5460.7530 2.26119e-06 MDRP_FITARCIMAGE: b1: Line 20 5656.6588 1.04901e-05 Reject MDRP_FITARCIMAGE: b1: Line 21 5675.8600 1.05018e-05 Reject MDRP_FITARCIMAGE: b1: Line 22 5689.8163 1.06929e-05 MDRP_FITARCIMAGE: b1: Line 23 5719.5300 1.01897e-05 Reject MDRP_FITARCIMAGE: b1: Line 24 5769.5980 1.78068e-06 MDRP_FITARCIMAGE: b1: Line 25 5790.6630 1.66351e-06 MDRP_FITARCIMAGE: b1: Line 26 5820.1558 4.93502e-06 MDRP_FITARCIMAGE: b1: Line 27 5852.4880 1.45517e-06 MDRP_FITARCIMAGE: b1: Line 28 5881.8950 1.45135e-06 MDRP_FITARCIMAGE: b1: Line 29 5944.8340 1.16333e-06 MDRP_FITARCIMAGE: b1: Line 30 5965.4710 9.07798e-06 Reject MDRP_FITARCIMAGE: b1: Line 31 6029.9970 1.42294e-06 MDRP_FITARCIMAGE: b1: Line 32 6074.3380 1.04374e-06 MDRP_FITARCIMAGE: b1: Line 33 6096.1630 9.24819e-07 MDRP_FITARCIMAGE: b1: Line 34 6143.0630 7.58952e-07 MDRP_FITARCIMAGE: b1: Line 35 6163.5940 1.02504e-06 MDRP_FITARCIMAGE: b1: Line 36 6217.2810 1.31447e-06 MDRP_FITARCIMAGE: b1: Line 37 6266.4950 2.46456e-06 MDRP_FITARCIMAGE: b1: Line 38 6304.7890 2.93789e-06 MDRP_FITARCIMAGE: b1: Line 39 6334.4280 1.64058e-06 MDRP_FITARCIMAGE: b1: Line 40 6382.9920 1.83299e-06 MDRP_FITARCIMAGE: b1: Line 41 6402.2460 1.47934e-06 MDRP_FITARCIMAGE: b1: Line 42 6438.4700 4.74129e-06 MDRP_FITARCIMAGE: b1: Line 43 6506.5280 5.18465e-06 MDRP_FITARCIMAGE: b1: Line 44 6532.8820 3.95059e-06 XY2TRACESET: b1: Total rejected = 0 MDRP_FITARCIMAGE: b1: Time 106. seconds elapsed MDRP_CALIB: b1: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 9026 pixels XY2TRACESET: b1: Total rejected = 1310 MDRP_FITDISPERSION: b1: Median wavelength widths = 1.00 1.05 1.07 1.10 pix (L B T R) MDRP_CALIB: b1: GOOD ARC!, sdR-b1-00200012.fit MDRP_CALIB: b1: CREATING FIBERFLATS---------------------- MDRP_CALIB: b1: Create fiberflats for flat # 1 of 2 MDRP_CALIB: b1: Flat sdR-b1-00200006.fit paired with arc sdR-b1-00200005.fit MDRP_CALIB: b1: Reading flat sdR-b1-00200006.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.06310 1.98361 1.95433 1.90782 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 6 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3486.2151 6579.5187 MDRP_SUPERFLAT: b1: Creating superflat from 702 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1065994 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.04785 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b1: Create fiberflats for flat # 2 of 2 MDRP_CALIB: b1: Flat sdR-b1-00200011.fit paired with arc sdR-b1-00200012.fit MDRP_CALIB: b1: Reading flat sdR-b1-00200011.fit SDSSPROC: b1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b1: Selecting op file boss_pixbias-56859-b1.fits.gz SDSSPROC: b1: Read noise = 2.05528 1.98904 1.92476 1.88877 electrons FINDOPFILE: b1: Selecting op file pixflatave-55056-b1.fits.gz SDSSPROC: b1: Correcting with pixel flat pixflatave-55056-b1.fits.gz FINDOPFILE: b1: Selecting op file badpixels-56149-b1.fits.gz SDSSPROC: b1: Correcting with badpixels badpixels-56149-b1.fits.gz EXTRACT_IMAGE: b1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b1: masked 8 pixels MDRP_SUPERFLAT: b1: Wavelength range = 3486.9553 6580.5802 MDRP_SUPERFLAT: b1: Creating superflat from 703 fibers MDRP_FIBERFLAT: b1: Number of fiberflat points LE 0 = 1064677 ML_QAIFUFLAT: b1: Normalizing to 4th highest value of 1.04790 ML_MATCHMJD: b1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8606/57163/calibstruct-b1.sav MDRP_CALIB: b1: Elapsed time = 1570. seconds MDRP_REDUCE: b1: FINISHED CALIBRATION--------------- MDRP_REDUCE: b1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1581. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r1: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0086XX/8606/slitmap-8606-57156-02.par MDRP_REDUCE: r1: STARTING CALIBRATION--------------- MDRP_CALIB: r1: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r1: Tracing flat # 1 of 2 MDRP_CALIB: r1: Reading flat sdR-r1-00200006.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.75008 3.19324 3.25410 3.23166 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00200006.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00000 MDRP_CCPEAKS: r1: Traces shifted by -0.699997 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97855987 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 700 MDRP_CCPEAKS: r1: Number of Missing Fibers: 9 MDRP_CCPEAKS: r1: Number of missing edge fibers: 1 MDRP_CCPEAKS: r1: Number of missing interior fibers: 8 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 9 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 59 195 205 229 230 518 544 562 645 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 588 1260 1305 1424 1428 2829 2946 3037 3446 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 58 194 204 228 229 517 543 561 644 MDRP_CCTRACEFIBERS: r1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 204 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 228 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 543 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 561 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 644 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00200006.fit XY2TRACESET: r1: Total rejected = 73627 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 87 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.99 1.14 1.07 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 49752 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 69 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 0.99 1.14 1.07 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 2 bright pixels in extracted flat sdR-r1-00200006.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00200006.fit MDRP_CALIB: r1: Tracing flat # 2 of 2 MDRP_CALIB: r1: Reading flat sdR-r1-00200011.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.72221 3.10703 3.26142 3.24929 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Tracing fibers in sdR-r1-00200011.fit ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: r1: Total Fibers: 709 MDRP_CCPEAKS: r1: Traces scaled by 1.00000 MDRP_CCPEAKS: r1: Traces shifted by -0.500000 ccd units MDRP_CCPEAKS: r1: Trace correlation = 0.97653199 MDRP_CCPEAKS: r1: THIS PASS: MDRP_CCPEAKS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCPEAKS: r1: Number of peaks Found: 700 MDRP_CCPEAKS: r1: Number of Missing Fibers: 9 MDRP_CCPEAKS: r1: Number of missing edge fibers: 1 MDRP_CCPEAKS: r1: Number of missing interior fibers: 8 MDRP_CCTRACEFIBERS: r1: EXPECTED TOTAL NUMBER OF FIBERS: 709 MDRP_CCTRACEFIBERS: r1: TOTAL MISSING FIBERS: 9 MDRP_CCTRACEFIBERS: r1: MISSING FIBERS (1-indexed): 59 195 205 229 230 518 544 562 645 MDRP_CCTRACEFIBERS: r1: MISSING PEAKS 588 1261 1305 1424 1429 2829 2946 3038 3446 MDRP_CCTRACEFIBERS: r1: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r1: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r1: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r1: Warning: Fixing traces: 58 194 204 228 229 517 543 561 644 MDRP_CCTRACEFIBERS: r1: Fiber 58 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 194 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 204 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 228 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 229 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 517 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 543 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 561 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Fiber 644 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r1: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r1: Fitting traces in sdR-r1-00200011.fit XY2TRACESET: r1: Total rejected = 79351 MDRP_CALIB: r1: Extracting flat with proftype= 1 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 76 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 1.00 1.13 1.07 pix (LL UL LR UR) ML_CCTWEAK: r1: Cross-correlating peaks up/down detector XY2TRACESET: r1: Total rejected = 52448 EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 49 pixels MDRP_FITFLATWIDTH: r1: Median spatial widths = 1.04 1.00 1.13 1.07 pix (LL UL LR UR) MDRP_CALIB: r1: Using proftype= 1 MDRP_CALIB: r1: Found 0 bright pixels in extracted flat sdR-r1-00200011.fit MDRP_CALIB: r1: GOOD FLAT!, sdR-r1-00200011.fit MDRP_CALIB: r1: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r1: Extracting arc # 1 of 2 MDRP_CALIB: r1: Reading arc sdR-r1-00200005.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.75815 3.17616 3.24415 3.22558 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000325098 MDRP_CALIB: r1: Arc sdR-r1-00200005.fit paired with flat sdR-r1-00200006.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 66020 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1150 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 398 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 145 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 48 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 20 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 6 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 67789 MDRP_CALIB: r1: Shifting traces with match_trace -0.0273438 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 122 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16544 -0.01881 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.774768 MDRP_FITARCIMAGE: r1: Best correlation = 0.774768 MDRP_FITARCIMAGE: r1: ASET = 3.89456 0.16544 -0.01881 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16328 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89622 0.16301 -0.01845 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769136 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89590 0.16338 -0.01864 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89598 0.16335 -0.01852 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773407 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89575 0.16384 -0.01853 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89567 0.16387 -0.01859 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769871 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89543 0.16395 -0.01854 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89543 0.16421 -0.01866 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770550 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16444 -0.01879 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89520 0.16442 -0.01873 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769544 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16450 -0.01880 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89503 0.16474 -0.01873 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768645 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89496 0.16490 -0.01868 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89488 0.16493 -0.01880 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771308 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16496 -0.01868 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16499 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770010 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16528 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768095 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16517 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768725 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16544 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767290 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89448 0.16546 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89448 0.16520 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766552 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16544 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767359 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16517 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770400 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16504 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769235 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16495 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16498 -0.01892 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770882 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89496 0.16490 -0.01880 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89496 0.16490 -0.01886 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768762 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89511 0.16444 -0.01879 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89519 0.16442 -0.01873 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767987 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89544 0.16434 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89544 0.16434 -0.01866 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770077 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16388 -0.01871 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89559 0.16388 -0.01871 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770480 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89591 0.16378 -0.01864 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89591 0.16351 -0.01858 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769499 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16328 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89622 0.16328 -0.01851 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773889 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.0935755 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.32745368 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7468 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7456 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7365 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7288 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7219 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7112 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7067 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7041 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7070 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7062 MDRP_FITARCIMAGE: r1: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7105 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 11 XY2TRACESET: r1: Total rejected = 7124 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 6928 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.24425e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.80466e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.20464e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.19524e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.09683e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.18462e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.35254e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.89383e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.20847e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.80765e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 1.92535e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.48171e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.02773e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.69246e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.49816e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.32443e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.59634e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 9.04342e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.39084e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.19808e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.46649e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.43898e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.67737e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.86273e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.06433e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.14990e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.15537e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.08297e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.54134e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.71119e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.04245e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 9.98500e-07 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 9.14086e-07 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.69621e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.76343e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.13447e-05 Reject MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.05410e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.15359e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 7.74767e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 9.60746e-06 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 8.25689e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 2.86258e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.14842e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 8.06580e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.51913e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.11503e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.84374e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.47113e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.26336e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.48786e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.26717e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 9.09540e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.14622e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.30648e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.12992e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 2.55745e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.35082e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 6.00969e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.63164e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.04797e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 7.30534e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 2.66655e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.54845e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.16217e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 1.07132e-06 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 130. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 14041 pixels XY2TRACESET: r1: Total rejected = 2165 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.07 1.04 1.06 1.03 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00200005.fit MDRP_CALIB: r1: Extracting arc # 2 of 2 MDRP_CALIB: r1: Reading arc sdR-r1-00200012.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.70729 3.11894 3.26501 3.24193 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz MDRP_CALIB: r1: Fraction of bad pixels in arc = 0.000359427 MDRP_CALIB: r1: Arc sdR-r1-00200012.fit paired with flat sdR-r1-00200011.fit MDRP_MATCH_TRACE: r1: Iteration: 0 Pixels Rejected: 66971 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 1 Pixels Rejected: 1135 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 2 Pixels Rejected: 429 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 3 Pixels Rejected: 147 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 4 Pixels Rejected: 66 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 5 Pixels Rejected: 19 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 6 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 7 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r1: Iteration: 8 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: r1: Warning: Large number of pixels rejected! 68772 MDRP_CALIB: r1: Shifting traces with match_trace -0.0131836 MDRP_CALIB: r1: Extracting arc EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 47 pixels MDRP_CALIB: r1: Setting 2-phase readout flag MDRP_CALIB: r1: Searching for initial wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 5 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r1: Combining rows 352 to 356 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16544 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.776665 MDRP_FITARCIMAGE: r1: Best correlation = 0.776665 MDRP_FITARCIMAGE: r1: ASET = 3.89456 0.16544 -0.01893 0.00123 -0.00001 -0.00002 MDRP_CALIB: r1: Searching for wavelength solution MDRP_FITARCIMAGE: r1: Setting ncoeff= 6 MDRP_FITARCIMAGE: r1: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89621 0.16288 -0.01851 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89629 0.16312 -0.01839 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771411 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89606 0.16333 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89606 0.16333 -0.01846 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770400 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89575 0.16384 -0.01859 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89575 0.16384 -0.01859 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771453 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89543 0.16394 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89551 0.16418 -0.01854 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769553 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89528 0.16440 -0.01866 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89520 0.16442 -0.01879 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769734 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89495 0.16450 -0.01880 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89503 0.16474 -0.01879 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767904 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89496 0.16490 -0.01874 0.00118 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89496 0.16490 -0.01874 0.00120 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768078 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16495 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89472 0.16498 -0.01892 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769444 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16528 -0.01893 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767237 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16517 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768782 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16517 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.766729 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16544 -0.01887 0.00123 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768174 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16517 -0.01893 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767795 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16541 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -187 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89456 0.16517 -0.01893 0.00119 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769174 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89464 0.16501 -0.01881 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89464 0.16501 -0.01887 0.00115 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.767733 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89480 0.16495 -0.01880 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89480 0.16495 -0.01886 0.00117 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771451 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89512 0.16485 -0.01861 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 187 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89504 0.16488 -0.01873 0.00122 -0.00001 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.769216 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89528 0.16440 -0.01860 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89520 0.16443 -0.01873 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.768114 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89544 0.16434 -0.01872 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -188 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89544 0.16434 -0.01872 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.770431 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89559 0.16388 -0.01877 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 188 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89567 0.16385 -0.01865 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.771924 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89590 0.16338 -0.01858 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89598 0.16362 -0.01852 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773047 XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r1: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Searching about coefficients = 3.89622 0.16327 -0.01857 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r1: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r1: Total rejected = 0 ARCFIT_GUESS: r1: Initial wavelength fit = 3.89622 0.16327 -0.01851 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r1: Initial correlation = 0.773164 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Iterating flux-weighted centers MDRP_FITARCIMAGE: r1: Discarding line 61, at 9657.7860 Ang: RMS= 1.1646428 pix MDRP_FITARCIMAGE: r1: Discarding line 63, at 9784.5030 Ang: RMS= 0.33121429 pix MDRP_FITARCIMAGE: r1: Number of arc lines: 63 MDRP_FITARCIMAGE: r1: Iteration 0 XY2TRACESET: r1: Total rejected = 7565 MDRP_FITARCIMAGE: r1: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r1: Iteration 1 XY2TRACESET: r1: Total rejected = 7477 MDRP_FITARCIMAGE: r1: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r1: Iteration 2 XY2TRACESET: r1: Total rejected = 7361 MDRP_FITARCIMAGE: r1: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r1: Iteration 3 XY2TRACESET: r1: Total rejected = 7259 MDRP_FITARCIMAGE: r1: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r1: Iteration 4 XY2TRACESET: r1: Total rejected = 7144 MDRP_FITARCIMAGE: r1: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r1: Iteration 5 XY2TRACESET: r1: Total rejected = 7045 MDRP_FITARCIMAGE: r1: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r1: Iteration 6 XY2TRACESET: r1: Total rejected = 7025 MDRP_FITARCIMAGE: r1: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r1: Iteration 7 XY2TRACESET: r1: Total rejected = 7019 MDRP_FITARCIMAGE: r1: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r1: Iteration 8 XY2TRACESET: r1: Total rejected = 7045 MDRP_FITARCIMAGE: r1: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r1: Iteration 9 XY2TRACESET: r1: Total rejected = 7061 MDRP_FITARCIMAGE: r1: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r1: Iteration 10 XY2TRACESET: r1: Total rejected = 7069 MDRP_FITARCIMAGE: r1: Iterations done XY2TRACESET: r1: Total rejected = 6902 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Line 0 5400.5616 1.21145e-05 Reject MDRP_FITARCIMAGE: r1: Line 1 5460.7530 4.83842e-06 MDRP_FITARCIMAGE: r1: Line 2 5656.6588 1.25459e-05 Reject MDRP_FITARCIMAGE: r1: Line 3 5675.8600 1.13634e-05 Reject MDRP_FITARCIMAGE: r1: Line 4 5689.8163 1.21495e-05 Reject MDRP_FITARCIMAGE: r1: Line 5 5719.5300 1.26350e-05 Reject MDRP_FITARCIMAGE: r1: Line 6 5769.5980 3.41277e-06 MDRP_FITARCIMAGE: r1: Line 7 5790.6630 2.98300e-06 MDRP_FITARCIMAGE: r1: Line 8 5820.1558 1.11091e-05 Reject MDRP_FITARCIMAGE: r1: Line 9 5852.4880 1.96217e-06 MDRP_FITARCIMAGE: r1: Line 10 5881.8950 2.03160e-06 MDRP_FITARCIMAGE: r1: Line 11 5944.8340 1.32022e-06 MDRP_FITARCIMAGE: r1: Line 12 5965.4710 1.04707e-05 Reject MDRP_FITARCIMAGE: r1: Line 13 6029.9970 1.76337e-06 MDRP_FITARCIMAGE: r1: Line 14 6074.3380 1.52958e-06 MDRP_FITARCIMAGE: r1: Line 15 6096.1630 1.38863e-06 MDRP_FITARCIMAGE: r1: Line 16 6143.0630 7.24377e-07 MDRP_FITARCIMAGE: r1: Line 17 6163.5940 8.53828e-07 MDRP_FITARCIMAGE: r1: Line 18 6217.2810 1.38823e-06 MDRP_FITARCIMAGE: r1: Line 19 6266.4950 1.22253e-06 MDRP_FITARCIMAGE: r1: Line 20 6304.7890 1.37676e-06 MDRP_FITARCIMAGE: r1: Line 21 6334.4280 1.34838e-06 MDRP_FITARCIMAGE: r1: Line 22 6382.9920 1.60256e-06 MDRP_FITARCIMAGE: r1: Line 23 6402.2460 1.95341e-06 MDRP_FITARCIMAGE: r1: Line 24 6438.4700 1.24178e-06 MDRP_FITARCIMAGE: r1: Line 25 6506.5280 3.10502e-06 MDRP_FITARCIMAGE: r1: Line 26 6532.8820 3.31799e-06 MDRP_FITARCIMAGE: r1: Line 27 6598.9530 3.22347e-06 MDRP_FITARCIMAGE: r1: Line 28 6717.0430 3.49353e-06 MDRP_FITARCIMAGE: r1: Line 29 6929.4670 2.87851e-06 MDRP_FITARCIMAGE: r1: Line 30 7032.4128 2.20965e-06 MDRP_FITARCIMAGE: r1: Line 31 7173.9380 1.33939e-06 MDRP_FITARCIMAGE: r1: Line 32 7245.1670 1.26877e-06 MDRP_FITARCIMAGE: r1: Line 33 7438.9000 3.76473e-06 MDRP_FITARCIMAGE: r1: Line 34 7488.8710 4.87231e-06 MDRP_FITARCIMAGE: r1: Line 35 7503.8691 1.04491e-05 MDRP_FITARCIMAGE: r1: Line 36 7514.6518 1.06206e-05 Reject MDRP_FITARCIMAGE: r1: Line 37 7535.7740 6.32181e-06 MDRP_FITARCIMAGE: r1: Line 38 7635.1060 8.45181e-06 MDRP_FITARCIMAGE: r1: Line 39 8014.7860 9.59045e-06 Reject MDRP_FITARCIMAGE: r1: Line 40 8103.6930 8.21677e-06 MDRP_FITARCIMAGE: r1: Line 41 8300.3260 3.08192e-06 MDRP_FITARCIMAGE: r1: Line 42 8377.6065 7.28096e-06 MDRP_FITARCIMAGE: r1: Line 43 8408.2096 8.31459e-06 MDRP_FITARCIMAGE: r1: Line 44 8495.3598 3.65178e-06 MDRP_FITARCIMAGE: r1: Line 45 8521.4422 1.06576e-05 Reject MDRP_FITARCIMAGE: r1: Line 46 8591.2583 2.88169e-06 MDRP_FITARCIMAGE: r1: Line 47 8634.6470 1.52355e-06 MDRP_FITARCIMAGE: r1: Line 48 8654.3831 2.26751e-06 MDRP_FITARCIMAGE: r1: Line 49 8853.8670 1.42638e-06 MDRP_FITARCIMAGE: r1: Line 50 8919.5007 2.24554e-06 MDRP_FITARCIMAGE: r1: Line 51 9122.9674 9.07089e-06 MDRP_FITARCIMAGE: r1: Line 52 9201.7590 2.03696e-06 MDRP_FITARCIMAGE: r1: Line 53 9300.8530 2.31556e-06 MDRP_FITARCIMAGE: r1: Line 54 9313.1386 6.31640e-06 MDRP_FITARCIMAGE: r1: Line 55 9326.5070 2.42553e-06 MDRP_FITARCIMAGE: r1: Line 56 9425.3790 3.39856e-06 MDRP_FITARCIMAGE: r1: Line 57 9459.2100 5.29094e-06 MDRP_FITARCIMAGE: r1: Line 58 9486.6800 4.46243e-06 MDRP_FITARCIMAGE: r1: Line 59 9534.1630 3.12518e-06 MDRP_FITARCIMAGE: r1: Line 60 9547.4000 6.89586e-06 MDRP_FITARCIMAGE: r1: Line 61 9657.7860 1.18429e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 62 9665.4240 3.96972e-06 MDRP_FITARCIMAGE: r1: Line 63 9784.5030 1.17524e-05 Reject-RMS MDRP_FITARCIMAGE: r1: Line 64 10139.750 9.67674e-07 XY2TRACESET: r1: Total rejected = 0 MDRP_FITARCIMAGE: r1: Time 131. seconds elapsed MDRP_CALIB: r1: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 14631 pixels XY2TRACESET: r1: Total rejected = 2901 MDRP_FITDISPERSION: r1: Median wavelength widths = 1.08 1.04 1.06 1.03 pix (L B T R) MDRP_CALIB: r1: GOOD ARC!, sdR-r1-00200012.fit MDRP_CALIB: r1: CREATING FIBERFLATS---------------------- MDRP_CALIB: r1: Create fiberflats for flat # 1 of 2 MDRP_CALIB: r1: Flat sdR-r1-00200006.fit paired with arc sdR-r1-00200005.fit MDRP_CALIB: r1: Reading flat sdR-r1-00200006.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.75008 3.19324 3.25410 3.23166 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 171 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5171.3683 10368.216 MDRP_SUPERFLAT: r1: Creating superflat from 686 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 720814 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.04400 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r1: Create fiberflats for flat # 2 of 2 MDRP_CALIB: r1: Flat sdR-r1-00200011.fit paired with arc sdR-r1-00200012.fit MDRP_CALIB: r1: Reading flat sdR-r1-00200011.fit SDSSPROC: r1: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r1: Selecting op file boss_pixbias-56859-r1.fits.gz SDSSPROC: r1: Read noise = 3.72221 3.10703 3.26142 3.24929 electrons FINDOPFILE: r1: Selecting op file pixflatave-56859-r1.fits.gz SDSSPROC: r1: Correcting with pixel flat pixflatave-56859-r1.fits.gz FINDOPFILE: r1: Selecting op file badpixels-56859-r1.fits.gz SDSSPROC: r1: Correcting with badpixels badpixels-56859-r1.fits.gz EXTRACT_IMAGE: r1: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r1: masked 163 pixels MDRP_SUPERFLAT: r1: Wavelength range = 5172.0808 10369.039 MDRP_SUPERFLAT: r1: Creating superflat from 687 fibers MDRP_FIBERFLAT: r1: Number of fiberflat points LE 0 = 720826 ML_QAIFUFLAT: r1: Normalizing to 4th highest value of 1.04501 ML_MATCHMJD: r1: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r1: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8606/57163/calibstruct-r1.sav MDRP_CALIB: r1: Elapsed time = 1807. seconds MDRP_REDUCE: r1: FINISHED CALIBRATION--------------- MDRP_REDUCE: r1: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1807. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r1 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: b2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0086XX/8606/slitmap-8606-57156-02.par MDRP_REDUCE: b2: STARTING CALIBRATION--------------- MDRP_CALIB: b2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: b2: Tracing flat # 1 of 2 MDRP_CALIB: b2: Reading flat sdR-b2-00200006.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.93537 2.15033 2.05917 1.79869 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00200006.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00000 MDRP_CCPEAKS: b2: Traces shifted by -1.00000 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.977625 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 710 MDRP_CCPEAKS: b2: Number of Missing Fibers: 4 MDRP_CCPEAKS: b2: Number of missing edge fibers: 3 MDRP_CCPEAKS: b2: Number of missing interior fibers: 1 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 4 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 1 258 343 515 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 305 1553 1966 2814 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 0 257 342 514 MDRP_CCTRACEFIBERS: b2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 342 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00200006.fit XY2TRACESET: b2: Total rejected = 455607 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.96 0.95 1.02 1.00 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 359049 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.96 0.95 1.02 1.00 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00200006.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00200006.fit MDRP_CALIB: b2: Tracing flat # 2 of 2 MDRP_CALIB: b2: Reading flat sdR-b2-00200011.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.01195 2.09976 2.05119 1.84271 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Tracing fibers in sdR-b2-00200011.fit ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: b2: Total Fibers: 714 MDRP_CCPEAKS: b2: Traces scaled by 1.00000 MDRP_CCPEAKS: b2: Traces shifted by -0.400002 ccd units MDRP_CCPEAKS: b2: Trace correlation = 0.971502 MDRP_CCPEAKS: b2: THIS PASS: MDRP_CCPEAKS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: b2: Number of peaks Found: 711 MDRP_CCPEAKS: b2: Number of Missing Fibers: 3 MDRP_CCPEAKS: b2: Number of missing edge fibers: 3 MDRP_CCPEAKS: b2: Number of missing interior fibers: 0 MDRP_CCTRACEFIBERS: b2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: b2: TOTAL MISSING FIBERS: 3 MDRP_CCTRACEFIBERS: b2: MISSING FIBERS (1-indexed): 1 258 515 MDRP_CCTRACEFIBERS: b2: MISSING PEAKS 305 1553 2815 MDRP_CCTRACEFIBERS: b2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: b2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: b2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: b2: Warning: Fixing traces: 0 257 514 MDRP_CCTRACEFIBERS: b2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: b2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: b2: Fitting traces in sdR-b2-00200011.fit XY2TRACESET: b2: Total rejected = 446071 MDRP_CALIB: b2: Extracting flat with proftype= 1 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.94 0.93 1.03 1.00 pix (LL UL LR UR) ML_CCTWEAK: b2: Cross-correlating peaks up/down detector XY2TRACESET: b2: Total rejected = 362958 EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 1 pixels MDRP_FITFLATWIDTH: b2: Median spatial widths = 0.94 0.93 1.03 1.00 pix (LL UL LR UR) MDRP_CALIB: b2: Using proftype= 1 MDRP_CALIB: b2: Found 0 bright pixels in extracted flat sdR-b2-00200011.fit MDRP_CALIB: b2: GOOD FLAT!, sdR-b2-00200011.fit MDRP_CALIB: b2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: b2: Extracting arc # 1 of 2 MDRP_CALIB: b2: Reading arc sdR-b2-00200005.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.89191 2.11503 2.03536 1.74459 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 0.000100756 MDRP_CALIB: b2: Arc sdR-b2-00200005.fit paired with flat sdR-b2-00200006.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 23267 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 314 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 86 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 35 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 4 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 7 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 23720 MDRP_CALIB: b2: Shifting traces with match_trace -0.0480957 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 7 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19940 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19944 -0.02399 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.743135 MDRP_FITARCIMAGE: b2: Best correlation = 0.743135 MDRP_FITARCIMAGE: b2: ASET = 3.68790 0.19944 -0.02399 0.00126 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.69030 0.19737 -0.02379 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.69030 0.19737 -0.02391 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.793654 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68991 0.19751 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68991 0.19778 -0.02392 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.792985 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68953 0.19805 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68953 0.19805 -0.02393 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.799971 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68934 0.19812 -0.02376 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68924 0.19842 -0.02388 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798117 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68896 0.19866 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68896 0.19866 -0.02395 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797887 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68877 0.19873 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68877 0.19873 -0.02396 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.799270 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68877 0.19874 -0.02366 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68867 0.19877 -0.02378 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796729 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19927 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68838 0.19900 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797513 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19933 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68829 0.19903 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797221 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19933 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68809 0.19937 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799620 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19940 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19944 -0.02399 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.799187 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19941 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19944 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798034 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19947 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794725 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19917 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796183 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19921 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800681 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19907 -0.02399 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800798 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19907 -0.02399 0.00122 ARCFIT_GUESS: b2: Initial correlation = 0.798886 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19900 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68799 0.19874 -0.02392 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798730 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19854 -0.02368 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68808 0.19858 -0.02380 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797927 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68818 0.19853 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797575 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68836 0.19807 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68836 0.19807 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795506 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19800 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68865 0.19769 -0.02378 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796715 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.66377402 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 4902 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 4708 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4737 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 5080 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5079 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5161 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5184 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5214 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5237 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5266 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5266 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 3.35520e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 2.90110e-05 Reject MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.14803e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.27576e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.63825e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.17724e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 8.46120e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 2.84511e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 5.07580e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.10646e-05 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 6.78120e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 7.24580e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.51547e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.76409e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 2.03713e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.91734e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.77021e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.01779e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 9.61599e-06 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.09251e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.10166e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.10064e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.28766e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.34763e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 4.87315e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.15172e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.16223e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.12790e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 8.87719e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.13956e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.10509e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 1.85068e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.16828e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 1.07134e-06 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.24657e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.22560e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.12356e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.35496e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.79985e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.61698e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 4.22983e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.40195e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.50305e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 102. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 2 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 9632 pixels XY2TRACESET: b2: Total rejected = 878 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.04 1.02 1.10 1.08 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00200005.fit MDRP_CALIB: b2: Extracting arc # 2 of 2 MDRP_CALIB: b2: Reading arc sdR-b2-00200012.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.96084 2.08341 2.02367 1.81331 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz MDRP_CALIB: b2: Fraction of bad pixels in arc = 5.35542e-05 MDRP_CALIB: b2: Arc sdR-b2-00200012.fit paired with flat sdR-b2-00200011.fit MDRP_MATCH_TRACE: b2: Iteration: 0 Pixels Rejected: 29736 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 1 Pixels Rejected: 365 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 2 Pixels Rejected: 111 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 3 Pixels Rejected: 30 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 4 Pixels Rejected: 20 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 5 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: b2: Iteration: 6 Pixels Rejected: 0 Finished? 1 MDRP_MATCH_TRACE: b2: Warning: Large number of pixels rejected! 30264 MDRP_CALIB: b2: Shifting traces with match_trace -0.0245361 MDRP_CALIB: b2: Extracting arc EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 16 pixels MDRP_CALIB: b2: Searching for initial wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 5 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: b2: Combining rows 355 to 359 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19941 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19944 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.742724 MDRP_FITARCIMAGE: b2: Best correlation = 0.742724 MDRP_FITARCIMAGE: b2: ASET = 3.68790 0.19944 -0.02393 0.00128 MDRP_CALIB: b2: Searching for wavelength solution MDRP_FITARCIMAGE: b2: Setting ncoeff= 6 MDRP_FITARCIMAGE: b2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.69030 0.19737 -0.02379 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.69030 0.19737 -0.02379 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.793845 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68991 0.19751 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 156 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68982 0.19781 -0.02392 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.794048 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68953 0.19805 -0.02381 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68953 0.19805 -0.02387 0.00126 ARCFIT_GUESS: b2: Initial correlation = 0.798814 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68934 0.19813 -0.02370 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68924 0.19816 -0.02382 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797004 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68896 0.19866 -0.02383 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68896 0.19866 -0.02395 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.800635 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68877 0.19873 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68867 0.19876 -0.02396 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796660 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68857 0.19880 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68857 0.19880 -0.02396 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799255 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68838 0.19927 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68838 0.19900 -0.02397 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797477 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19933 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68819 0.19933 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.799095 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68819 0.19934 -0.02374 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68809 0.19938 -0.02386 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.796199 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19941 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68790 0.19944 -0.02393 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797905 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19947 -0.02399 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.797525 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19947 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.784346 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19947 -0.02399 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.798439 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68780 0.19947 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68780 0.19921 -0.02393 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.799616 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19907 -0.02393 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.800062 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68779 0.19907 -0.02387 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68779 0.19907 -0.02399 0.00124 ARCFIT_GUESS: b2: Initial correlation = 0.799531 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68799 0.19901 -0.02380 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 154 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68789 0.19878 -0.02393 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.797839 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68798 0.19860 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68798 0.19860 -0.02398 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.798942 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68818 0.19853 -0.02386 0.00124 ARCFIT_ITER: b2: Searching lags from -155 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68818 0.19853 -0.02398 0.00128 ARCFIT_GUESS: b2: Initial correlation = 0.797192 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68836 0.19807 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68836 0.19807 -0.02391 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.795234 XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68467 0.19959 -0.02385 0.00124 ARCFIT_ITER: b2: Searching lags from -772 to 772 spaced 2 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Searching about coefficients = 3.68856 0.19800 -0.02384 0.00124 ARCFIT_ITER: b2: Searching lags from -156 to 155 spaced 1 pixels XY2TRACESET: b2: Total rejected = 0 ARCFIT_GUESS: b2: Initial wavelength fit = 3.68856 0.19773 -0.02396 0.00120 ARCFIT_GUESS: b2: Initial correlation = 0.796928 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Iterating flux-weighted centers MDRP_FITARCIMAGE: b2: Discarding line 2, at 3654.8390 Ang: RMS= 0.66858487 pix MDRP_FITARCIMAGE: b2: Number of arc lines: 44 MDRP_FITARCIMAGE: b2: Iteration 0 XY2TRACESET: b2: Total rejected = 5144 MDRP_FITARCIMAGE: b2: Rejecting line at 5341.0938 Ang MDRP_FITARCIMAGE: b2: Iteration 1 XY2TRACESET: b2: Total rejected = 5108 MDRP_FITARCIMAGE: b2: Rejecting line at 4306.6720 Ang MDRP_FITARCIMAGE: b2: Iteration 2 XY2TRACESET: b2: Total rejected = 4952 MDRP_FITARCIMAGE: b2: Rejecting line at 3650.1570 Ang MDRP_FITARCIMAGE: b2: Iteration 3 XY2TRACESET: b2: Total rejected = 5219 MDRP_FITARCIMAGE: b2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: b2: Iteration 4 XY2TRACESET: b2: Total rejected = 5219 MDRP_FITARCIMAGE: b2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: b2: Iteration 5 XY2TRACESET: b2: Total rejected = 5236 MDRP_FITARCIMAGE: b2: Rejecting line at 3983.8390 Ang MDRP_FITARCIMAGE: b2: Iteration 6 XY2TRACESET: b2: Total rejected = 5303 MDRP_FITARCIMAGE: b2: Rejecting line at 4412.9890 Ang MDRP_FITARCIMAGE: b2: Iteration 7 XY2TRACESET: b2: Total rejected = 5337 MDRP_FITARCIMAGE: b2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: b2: Iteration 8 XY2TRACESET: b2: Total rejected = 5367 MDRP_FITARCIMAGE: b2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: b2: Iteration 9 XY2TRACESET: b2: Total rejected = 5393 MDRP_FITARCIMAGE: b2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: b2: Iteration 10 XY2TRACESET: b2: Total rejected = 5423 MDRP_FITARCIMAGE: b2: Iterations done XY2TRACESET: b2: Total rejected = 5423 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Line 0 3610.5080 3.65802e-07 MDRP_FITARCIMAGE: b2: Line 1 3650.1570 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 2 3654.8390 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 3 3983.8390 1.12843e-05 Reject MDRP_FITARCIMAGE: b2: Line 4 4046.5720 1.46810e-06 MDRP_FITARCIMAGE: b2: Line 5 4077.8380 1.65676e-06 MDRP_FITARCIMAGE: b2: Line 6 4306.6720 1.15101e-05 Reject MDRP_FITARCIMAGE: b2: Line 7 4339.2200 8.19004e-06 MDRP_FITARCIMAGE: b2: Line 8 4347.5060 3.27900e-06 MDRP_FITARCIMAGE: b2: Line 9 4358.3370 5.95417e-06 MDRP_FITARCIMAGE: b2: Line 10 4412.9890 1.14044e-05 Reject MDRP_FITARCIMAGE: b2: Line 11 4662.3520 7.42217e-06 MDRP_FITARCIMAGE: b2: Line 12 4678.1490 8.76216e-06 MDRP_FITARCIMAGE: b2: Line 13 4799.9120 2.43636e-06 MDRP_FITARCIMAGE: b2: Line 14 4916.0700 3.93259e-06 MDRP_FITARCIMAGE: b2: Line 15 5085.8220 2.09158e-06 MDRP_FITARCIMAGE: b2: Line 16 5330.7775 7.83026e-06 MDRP_FITARCIMAGE: b2: Line 17 5341.0938 0.00000 Reject-offset MDRP_FITARCIMAGE: b2: Line 18 5400.5616 4.87560e-06 MDRP_FITARCIMAGE: b2: Line 19 5460.7530 2.13579e-06 MDRP_FITARCIMAGE: b2: Line 20 5656.6588 9.71663e-06 Reject MDRP_FITARCIMAGE: b2: Line 21 5675.8600 1.11664e-05 Reject MDRP_FITARCIMAGE: b2: Line 22 5689.8163 1.08350e-05 Reject MDRP_FITARCIMAGE: b2: Line 23 5719.5300 1.03801e-05 Reject MDRP_FITARCIMAGE: b2: Line 24 5769.5980 1.39531e-06 MDRP_FITARCIMAGE: b2: Line 25 5790.6630 1.42054e-06 MDRP_FITARCIMAGE: b2: Line 26 5820.1558 5.21889e-06 MDRP_FITARCIMAGE: b2: Line 27 5852.4880 1.24145e-06 MDRP_FITARCIMAGE: b2: Line 28 5881.8950 1.27866e-06 MDRP_FITARCIMAGE: b2: Line 29 5944.8340 1.55364e-06 MDRP_FITARCIMAGE: b2: Line 30 5965.4710 8.93348e-06 Reject MDRP_FITARCIMAGE: b2: Line 31 6029.9970 2.83127e-06 MDRP_FITARCIMAGE: b2: Line 32 6074.3380 2.83878e-06 MDRP_FITARCIMAGE: b2: Line 33 6096.1630 2.51762e-06 MDRP_FITARCIMAGE: b2: Line 34 6143.0630 1.54034e-06 MDRP_FITARCIMAGE: b2: Line 35 6163.5940 1.48445e-06 MDRP_FITARCIMAGE: b2: Line 36 6217.2810 1.30088e-06 MDRP_FITARCIMAGE: b2: Line 37 6266.4950 1.31334e-06 MDRP_FITARCIMAGE: b2: Line 38 6304.7890 2.40303e-06 MDRP_FITARCIMAGE: b2: Line 39 6334.4280 2.48613e-06 MDRP_FITARCIMAGE: b2: Line 40 6382.9920 1.93448e-06 MDRP_FITARCIMAGE: b2: Line 41 6402.2460 1.75754e-06 MDRP_FITARCIMAGE: b2: Line 42 6438.4700 4.73108e-06 MDRP_FITARCIMAGE: b2: Line 43 6506.5280 3.74081e-06 MDRP_FITARCIMAGE: b2: Line 44 6532.8820 5.75185e-06 XY2TRACESET: b2: Total rejected = 0 MDRP_FITARCIMAGE: b2: Time 103. seconds elapsed MDRP_CALIB: b2: Number of Rejected lamp lines: 3 out of 45 lamp lines EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 9092 pixels XY2TRACESET: b2: Total rejected = 871 MDRP_FITDISPERSION: b2: Median wavelength widths = 1.06 1.05 1.12 1.09 pix (L B T R) MDRP_CALIB: b2: GOOD ARC!, sdR-b2-00200012.fit MDRP_CALIB: b2: CREATING FIBERFLATS---------------------- MDRP_CALIB: b2: Create fiberflats for flat # 1 of 2 MDRP_CALIB: b2: Flat sdR-b2-00200006.fit paired with arc sdR-b2-00200005.fit MDRP_CALIB: b2: Reading flat sdR-b2-00200006.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 1.93537 2.15033 2.05917 1.79869 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3565.3880 6672.8400 MDRP_SUPERFLAT: b2: Creating superflat from 707 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1108390 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.11302 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b2: Create fiberflats for flat # 2 of 2 MDRP_CALIB: b2: Flat sdR-b2-00200011.fit paired with arc sdR-b2-00200012.fit MDRP_CALIB: b2: Reading flat sdR-b2-00200011.fit SDSSPROC: b2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: b2: Selecting op file boss_pixbias-56859-b2.fits.gz BOLTON_BIASSUB: b2: Doing row-by-row bias for b2 crazy quadrant. SDSSPROC: b2: Read noise = 2.01195 2.09976 2.05119 1.84271 electrons FINDOPFILE: b2: Selecting op file pixflatave-55056-b2.fits.gz SDSSPROC: b2: Correcting with pixel flat pixflatave-55056-b2.fits.gz FINDOPFILE: b2: Selecting op file badpixels-56149-b2.fits.gz SDSSPROC: b2: Correcting with badpixels badpixels-56149-b2.fits.gz EXTRACT_IMAGE: b2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: b2: masked 0 pixels MDRP_SUPERFLAT: b2: Wavelength range = 3565.0552 6672.5685 MDRP_SUPERFLAT: b2: Creating superflat from 707 fibers MDRP_FIBERFLAT: b2: Number of fiberflat points LE 0 = 1107957 ML_QAIFUFLAT: b2: Normalizing to 4th highest value of 1.10786 ML_MATCHMJD: b2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: b2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8606/57163/calibstruct-b2.sav MDRP_CALIB: b2: Elapsed time = 1560. seconds MDRP_REDUCE: b2: FINISHED CALIBRATION--------------- MDRP_REDUCE: b2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1561. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera b2 MDRP_REDUCE2D: Continuing with next camera ML_READSLITMAP: r2: Reading slitmap from /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/slitmaps/0086XX/8606/slitmap-8606-57156-02.par MDRP_REDUCE: r2: STARTING CALIBRATION--------------- MDRP_CALIB: r2: LOOP THROUGH FLATS----------------------------- MDRP_CALIB: r2: Tracing flat # 1 of 2 MDRP_CALIB: r2: Reading flat sdR-r2-00200006.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.85960 2.83345 2.72850 2.92111 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00200006.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00000 MDRP_CCPEAKS: r2: Traces shifted by -0.799995 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.97207568 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 707 MDRP_CCPEAKS: r2: Number of Missing Fibers: 7 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 7 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 1 36 37 38 39 258 515 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 290 449 454 458 463 1549 2815 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 0 35 36 37 38 257 514 MDRP_CCTRACEFIBERS: r2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00200006.fit XY2TRACESET: r2: Total rejected = 66738 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 35 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 1.00 0.99 1.02 1.08 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 38310 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 26 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 0.99 0.99 1.02 1.08 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 0 bright pixels in extracted flat sdR-r2-00200006.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00200006.fit MDRP_CALIB: r2: Tracing flat # 2 of 2 MDRP_CALIB: r2: Reading flat sdR-r2-00200011.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.73603 2.83660 2.73157 2.72880 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Tracing fibers in sdR-r2-00200011.fit ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/opfiles/opFibers-03-56886.par MDRP_CCTRACEFIBERS: r2: Total Fibers: 714 MDRP_CCPEAKS: r2: Traces scaled by 1.00000 MDRP_CCPEAKS: r2: Traces shifted by -0.299995 ccd units MDRP_CCPEAKS: r2: Trace correlation = 0.96451712 MDRP_CCPEAKS: r2: THIS PASS: MDRP_CCPEAKS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCPEAKS: r2: Number of peaks Found: 707 MDRP_CCPEAKS: r2: Number of Missing Fibers: 7 MDRP_CCPEAKS: r2: Number of missing edge fibers: 4 MDRP_CCPEAKS: r2: Number of missing interior fibers: 3 MDRP_CCTRACEFIBERS: r2: EXPECTED TOTAL NUMBER OF FIBERS: 714 MDRP_CCTRACEFIBERS: r2: TOTAL MISSING FIBERS: 7 MDRP_CCTRACEFIBERS: r2: MISSING FIBERS (1-indexed): 1 36 37 38 39 258 515 MDRP_CCTRACEFIBERS: r2: MISSING PEAKS 290 449 454 458 463 1549 2815 MDRP_CCTRACEFIBERS: r2: TRACING FIBERS ALONG THE REST OF THE CCD MDRP_CCTRACEFIBERS: r2: Comparing traces to ystart. Fit polynomial and assume traces are mapped to that. MDRP_CCTRACEFIBERS: r2: Deviant centers from this rejected and replaced with predicted position from fit. MDRP_CCTRACEFIBERS: r2: Warning: Fixing traces: 0 35 36 37 38 257 514 MDRP_CCTRACEFIBERS: r2: Fiber 0 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 35 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 36 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 37 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 38 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 257 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Fiber 514 Only 1 neighboring good fibers, skipping MDRP_CCTRACEFIBERS: r2: Flagging fibermask bits for any fiber with more than 45% of positions masked out. Ignore xgood MDRP_CALIB: r2: Fitting traces in sdR-r2-00200011.fit XY2TRACESET: r2: Total rejected = 63507 MDRP_CALIB: r2: Extracting flat with proftype= 1 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 48 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 1.00 1.00 1.02 1.09 pix (LL UL LR UR) ML_CCTWEAK: r2: Cross-correlating peaks up/down detector XY2TRACESET: r2: Total rejected = 37443 EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 43 pixels MDRP_FITFLATWIDTH: r2: Median spatial widths = 1.00 1.00 1.02 1.09 pix (LL UL LR UR) MDRP_CALIB: r2: Using proftype= 1 MDRP_CALIB: r2: Found 0 bright pixels in extracted flat sdR-r2-00200011.fit MDRP_CALIB: r2: GOOD FLAT!, sdR-r2-00200011.fit MDRP_CALIB: r2: LOOP THROUGH ARCS------------------------- MDRP_CALIB: r2: Extracting arc # 1 of 2 MDRP_CALIB: r2: Reading arc sdR-r2-00200005.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.85133 2.83939 2.73213 2.90668 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000821076 MDRP_CALIB: r2: Arc sdR-r2-00200005.fit paired with flat sdR-r2-00200006.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 43816 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 1028 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 349 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 122 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 38 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 12 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 11 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 3 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 45383 MDRP_CALIB: r2: Shifting traces with match_trace -0.0476074 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 133 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89824 0.16367 -0.01838 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.777729 MDRP_FITARCIMAGE: r2: Best correlation = 0.777729 MDRP_FITARCIMAGE: r2: ASET = 3.89824 0.16367 -0.01838 0.00120 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89968 0.16130 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89976 0.16127 -0.01826 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.763588 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89938 0.16180 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89946 0.16178 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769328 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89924 0.16226 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89916 0.16228 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767156 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89892 0.16236 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765459 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89878 0.16282 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89878 0.16282 -0.01830 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768736 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16292 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89854 0.16289 -0.01837 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768012 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16293 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89846 0.16319 -0.01837 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767248 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16337 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89839 0.16335 -0.01837 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767361 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89823 0.16341 -0.01850 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766904 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16343 -0.01856 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765916 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16370 -0.01844 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765710 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89824 0.16367 -0.01838 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766325 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89824 0.16367 -0.01838 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766741 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16338 -0.01850 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767713 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16337 -0.01856 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89839 0.16334 -0.01843 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768348 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89847 0.16332 -0.01849 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89855 0.16329 -0.01837 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766285 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89862 0.16287 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89870 0.16311 -0.01830 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768548 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89894 0.16276 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89886 0.16279 -0.01830 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768471 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89908 0.16231 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89908 0.16258 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766874 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89940 0.16220 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89940 0.16220 -0.01828 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768542 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89962 0.16172 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769470 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.90001 0.16159 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89993 0.16135 -0.01826 0.00116 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765041 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.3136315 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.46021934 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 7631 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 7575 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7500 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7435 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7302 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7185 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7132 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7079 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7096 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7117 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7146 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 7160 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 6990 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.17500e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.22578e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.05867e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.10600e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 9.72489e-06 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.01032e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.34151e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.11900e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.16342e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.10075e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.23764e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 3.12977e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.16291e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.46261e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 9.54666e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 8.39818e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.50190e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.98256e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.71450e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 6.67865e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.36267e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.61835e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.42855e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.20852e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.97595e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 2.88781e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.13292e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.32627e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.31429e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.73545e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.87637e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.22287e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.11994e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.13875e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.23121e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.12971e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.09086e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.48202e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.34008e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 9.43987e-06 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 9.51110e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.96505e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 8.19797e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 8.73251e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 4.63571e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.07419e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.96920e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 2.50521e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 1.94509e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.51520e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.27701e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 7.93762e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.15830e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.33061e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 5.82645e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.48641e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.02583e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 4.84689e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.47295e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.05565e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.91285e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.07993e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.33832e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.03622e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.46159e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 129. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 12810 pixels XY2TRACESET: r2: Total rejected = 2244 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.02 1.02 1.06 1.04 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00200005.fit MDRP_CALIB: r2: Extracting arc # 2 of 2 MDRP_CALIB: r2: Reading arc sdR-r2-00200012.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.74165 2.84221 2.74171 2.73867 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz MDRP_CALIB: r2: Fraction of bad pixels in arc = 0.000696183 MDRP_CALIB: r2: Arc sdR-r2-00200012.fit paired with flat sdR-r2-00200011.fit MDRP_MATCH_TRACE: r2: Iteration: 0 Pixels Rejected: 37740 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 1 Pixels Rejected: 609 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 2 Pixels Rejected: 188 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 3 Pixels Rejected: 61 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 4 Pixels Rejected: 20 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 5 Pixels Rejected: 11 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 6 Pixels Rejected: 8 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 7 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 8 Pixels Rejected: 2 Finished? 0 MDRP_MATCH_TRACE: r2: Iteration: 9 Pixels Rejected: 1 Finished? 0 MDRP_MATCH_TRACE: r2: Warning: Large number of pixels rejected! 38642 MDRP_CALIB: r2: Shifting traces with match_trace -0.0146484 MDRP_CALIB: r2: Extracting arc EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 81 pixels MDRP_CALIB: r2: Setting 2-phase readout flag MDRP_CALIB: r2: Searching for initial wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 5 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat MDRP_FITARCIMAGE: r2: Combining rows 355 to 359 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16370 -0.01850 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.777220 MDRP_FITARCIMAGE: r2: Best correlation = 0.777220 MDRP_FITARCIMAGE: r2: ASET = 3.89816 0.16370 -0.01850 0.00122 -0.00002 -0.00002 MDRP_CALIB: r2: Searching for wavelength solution MDRP_FITARCIMAGE: r2: Setting ncoeff= 6 MDRP_FITARCIMAGE: r2: Reading lamp file /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangadrp/v1_5_4/etc/lamphgcdne.dat XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89968 0.16130 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89976 0.16127 -0.01826 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.759114 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89938 0.16180 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89938 0.16180 -0.01828 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768290 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89908 0.16231 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89916 0.16228 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.771272 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89892 0.16236 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89892 0.16263 -0.01829 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765423 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89878 0.16282 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89870 0.16284 -0.01830 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766921 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89846 0.16293 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89854 0.16290 -0.01831 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767366 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89847 0.16333 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89839 0.16309 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766501 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16338 -0.01838 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767130 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16342 -0.01856 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89823 0.16339 -0.01844 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768898 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16343 -0.01850 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767344 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89800 0.16347 -0.01863 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16368 -0.01850 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765069 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16370 -0.01844 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766199 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89816 0.16343 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89816 0.16370 -0.01850 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.764109 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16338 -0.01844 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -189 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89831 0.16338 -0.01844 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767136 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89831 0.16337 -0.01850 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89839 0.16335 -0.01837 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769022 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89847 0.16333 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 189 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89847 0.16333 -0.01837 0.00122 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.765718 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89862 0.16287 -0.01843 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89870 0.16311 -0.01830 0.00120 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.768408 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89878 0.16282 -0.01842 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89886 0.16279 -0.01830 0.00118 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.769279 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89910 0.16271 -0.01841 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -190 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89910 0.16244 -0.01829 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767849 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89940 0.16220 -0.01840 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 190 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89940 0.16220 -0.01828 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767350 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89954 0.16175 -0.01839 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -191 to 191 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89962 0.16172 -0.01827 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.767439 XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89270 0.16507 -0.01875 0.00119 -0.00001 -0.00002 ARCFIT_ITER: r2: Searching lags from -938 to 936 spaced 2 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Searching about coefficients = 3.89984 0.16124 -0.01838 0.00118 -0.00002 -0.00002 ARCFIT_ITER: r2: Searching lags from -192 to 192 spaced 1 pixels XY2TRACESET: r2: Total rejected = 0 ARCFIT_GUESS: r2: Initial wavelength fit = 3.89999 0.16146 -0.01826 0.00114 -0.00002 -0.00002 ARCFIT_GUESS: r2: Initial correlation = 0.766024 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Iterating flux-weighted centers MDRP_FITARCIMAGE: r2: Discarding line 61, at 9657.7860 Ang: RMS= 1.3078055 pix MDRP_FITARCIMAGE: r2: Discarding line 63, at 9784.5030 Ang: RMS= 0.45640259 pix MDRP_FITARCIMAGE: r2: Number of arc lines: 63 MDRP_FITARCIMAGE: r2: Iteration 0 XY2TRACESET: r2: Total rejected = 7743 MDRP_FITARCIMAGE: r2: Rejecting line at 5719.5300 Ang MDRP_FITARCIMAGE: r2: Iteration 1 XY2TRACESET: r2: Total rejected = 7706 MDRP_FITARCIMAGE: r2: Rejecting line at 5689.8163 Ang MDRP_FITARCIMAGE: r2: Iteration 2 XY2TRACESET: r2: Total rejected = 7600 MDRP_FITARCIMAGE: r2: Rejecting line at 5675.8600 Ang MDRP_FITARCIMAGE: r2: Iteration 3 XY2TRACESET: r2: Total rejected = 7496 MDRP_FITARCIMAGE: r2: Rejecting line at 5656.6588 Ang MDRP_FITARCIMAGE: r2: Iteration 4 XY2TRACESET: r2: Total rejected = 7397 MDRP_FITARCIMAGE: r2: Rejecting line at 5400.5616 Ang MDRP_FITARCIMAGE: r2: Iteration 5 XY2TRACESET: r2: Total rejected = 7286 MDRP_FITARCIMAGE: r2: Rejecting line at 5820.1558 Ang MDRP_FITARCIMAGE: r2: Iteration 6 XY2TRACESET: r2: Total rejected = 7209 MDRP_FITARCIMAGE: r2: Rejecting line at 5965.4710 Ang MDRP_FITARCIMAGE: r2: Iteration 7 XY2TRACESET: r2: Total rejected = 7143 MDRP_FITARCIMAGE: r2: Rejecting line at 7514.6518 Ang MDRP_FITARCIMAGE: r2: Iteration 8 XY2TRACESET: r2: Total rejected = 7159 MDRP_FITARCIMAGE: r2: Rejecting line at 8521.4422 Ang MDRP_FITARCIMAGE: r2: Iteration 9 XY2TRACESET: r2: Total rejected = 7176 MDRP_FITARCIMAGE: r2: Rejecting line at 7503.8691 Ang MDRP_FITARCIMAGE: r2: Iteration 10 XY2TRACESET: r2: Total rejected = 7192 MDRP_FITARCIMAGE: r2: Rejecting line at 8014.7860 Ang MDRP_FITARCIMAGE: r2: Iteration 11 XY2TRACESET: r2: Total rejected = 7203 MDRP_FITARCIMAGE: r2: Iterations done XY2TRACESET: r2: Total rejected = 7086 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Line 0 5400.5616 1.13529e-05 Reject MDRP_FITARCIMAGE: r2: Line 1 5460.7530 5.44056e-06 MDRP_FITARCIMAGE: r2: Line 2 5656.6588 1.15626e-05 Reject MDRP_FITARCIMAGE: r2: Line 3 5675.8600 1.23542e-05 Reject MDRP_FITARCIMAGE: r2: Line 4 5689.8163 1.17501e-05 Reject MDRP_FITARCIMAGE: r2: Line 5 5719.5300 1.24372e-05 Reject MDRP_FITARCIMAGE: r2: Line 6 5769.5980 2.36248e-06 MDRP_FITARCIMAGE: r2: Line 7 5790.6630 2.23378e-06 MDRP_FITARCIMAGE: r2: Line 8 5820.1558 1.20865e-05 Reject MDRP_FITARCIMAGE: r2: Line 9 5852.4880 3.18545e-06 MDRP_FITARCIMAGE: r2: Line 10 5881.8950 3.04620e-06 MDRP_FITARCIMAGE: r2: Line 11 5944.8340 2.90277e-06 MDRP_FITARCIMAGE: r2: Line 12 5965.4710 1.14802e-05 Reject MDRP_FITARCIMAGE: r2: Line 13 6029.9970 1.59345e-06 MDRP_FITARCIMAGE: r2: Line 14 6074.3380 9.88974e-07 MDRP_FITARCIMAGE: r2: Line 15 6096.1630 9.42747e-07 MDRP_FITARCIMAGE: r2: Line 16 6143.0630 7.50621e-07 MDRP_FITARCIMAGE: r2: Line 17 6163.5940 8.42704e-07 MDRP_FITARCIMAGE: r2: Line 18 6217.2810 9.41190e-07 MDRP_FITARCIMAGE: r2: Line 19 6266.4950 6.83250e-07 MDRP_FITARCIMAGE: r2: Line 20 6304.7890 1.37630e-06 MDRP_FITARCIMAGE: r2: Line 21 6334.4280 1.82226e-06 MDRP_FITARCIMAGE: r2: Line 22 6382.9920 2.41750e-06 MDRP_FITARCIMAGE: r2: Line 23 6402.2460 2.35488e-06 MDRP_FITARCIMAGE: r2: Line 24 6438.4700 1.93186e-06 MDRP_FITARCIMAGE: r2: Line 25 6506.5280 2.89919e-06 MDRP_FITARCIMAGE: r2: Line 26 6532.8820 3.24895e-06 MDRP_FITARCIMAGE: r2: Line 27 6598.9530 3.36367e-06 MDRP_FITARCIMAGE: r2: Line 28 6717.0430 3.28258e-06 MDRP_FITARCIMAGE: r2: Line 29 6929.4670 2.69738e-06 MDRP_FITARCIMAGE: r2: Line 30 7032.4128 1.84222e-06 MDRP_FITARCIMAGE: r2: Line 31 7173.9380 1.18337e-06 MDRP_FITARCIMAGE: r2: Line 32 7245.1670 1.10502e-06 MDRP_FITARCIMAGE: r2: Line 33 7438.9000 4.14974e-06 MDRP_FITARCIMAGE: r2: Line 34 7488.8710 5.37336e-06 MDRP_FITARCIMAGE: r2: Line 35 7503.8691 1.03668e-05 Reject MDRP_FITARCIMAGE: r2: Line 36 7514.6518 1.09983e-05 Reject MDRP_FITARCIMAGE: r2: Line 37 7535.7740 6.47398e-06 MDRP_FITARCIMAGE: r2: Line 38 7635.1060 7.64203e-06 MDRP_FITARCIMAGE: r2: Line 39 8014.7860 9.99557e-06 Reject MDRP_FITARCIMAGE: r2: Line 40 8103.6930 9.12435e-06 MDRP_FITARCIMAGE: r2: Line 41 8300.3260 3.63233e-06 MDRP_FITARCIMAGE: r2: Line 42 8377.6065 7.91394e-06 MDRP_FITARCIMAGE: r2: Line 43 8408.2096 8.29887e-06 MDRP_FITARCIMAGE: r2: Line 44 8495.3598 4.45763e-06 MDRP_FITARCIMAGE: r2: Line 45 8521.4422 1.08804e-05 Reject MDRP_FITARCIMAGE: r2: Line 46 8591.2583 3.87441e-06 MDRP_FITARCIMAGE: r2: Line 47 8634.6470 2.33903e-06 MDRP_FITARCIMAGE: r2: Line 48 8654.3831 2.00534e-06 MDRP_FITARCIMAGE: r2: Line 49 8853.8670 1.47357e-06 MDRP_FITARCIMAGE: r2: Line 50 8919.5007 2.29271e-06 MDRP_FITARCIMAGE: r2: Line 51 9122.9674 7.78132e-06 MDRP_FITARCIMAGE: r2: Line 52 9201.7590 2.30650e-06 MDRP_FITARCIMAGE: r2: Line 53 9300.8530 2.39568e-06 MDRP_FITARCIMAGE: r2: Line 54 9313.1386 5.83778e-06 MDRP_FITARCIMAGE: r2: Line 55 9326.5070 2.49699e-06 MDRP_FITARCIMAGE: r2: Line 56 9425.3790 3.03960e-06 MDRP_FITARCIMAGE: r2: Line 57 9459.2100 4.76814e-06 MDRP_FITARCIMAGE: r2: Line 58 9486.6800 4.53152e-06 MDRP_FITARCIMAGE: r2: Line 59 9534.1630 3.14142e-06 MDRP_FITARCIMAGE: r2: Line 60 9547.4000 4.94240e-06 MDRP_FITARCIMAGE: r2: Line 61 9657.7860 1.30305e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 62 9665.4240 2.45413e-06 MDRP_FITARCIMAGE: r2: Line 63 9784.5030 1.16163e-05 Reject-RMS MDRP_FITARCIMAGE: r2: Line 64 10139.750 1.64014e-06 XY2TRACESET: r2: Total rejected = 0 MDRP_FITARCIMAGE: r2: Time 129. seconds elapsed MDRP_CALIB: r2: Number of Rejected lamp lines: 1 out of 45 lamp lines EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 12247 pixels XY2TRACESET: r2: Total rejected = 2246 MDRP_FITDISPERSION: r2: Median wavelength widths = 1.01 1.01 1.08 1.05 pix (L B T R) MDRP_CALIB: r2: GOOD ARC!, sdR-r2-00200012.fit MDRP_CALIB: r2: CREATING FIBERFLATS---------------------- MDRP_CALIB: r2: Create fiberflats for flat # 1 of 2 MDRP_CALIB: r2: Flat sdR-r2-00200006.fit paired with arc sdR-r2-00200005.fit MDRP_CALIB: r2: Reading flat sdR-r2-00200006.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.85960 2.83345 2.72850 2.92111 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 633 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5244.5699 10430.319 MDRP_SUPERFLAT: r2: Creating superflat from 703 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 707687 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.09269 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r2: Create fiberflats for flat # 2 of 2 MDRP_CALIB: r2: Flat sdR-r2-00200011.fit paired with arc sdR-r2-00200012.fit MDRP_CALIB: r2: Reading flat sdR-r2-00200011.fit SDSSPROC: r2: BOSS survey-quality MJD: applying pixbias whether you like it or not! FINDOPFILE: r2: Selecting op file boss_pixbias-56859-r2.fits.gz SDSSPROC: r2: Read noise = 2.73603 2.83660 2.73157 2.72880 electrons FINDOPFILE: r2: Selecting op file pixflatave-56859-r2.fits.gz SDSSPROC: r2: Correcting with pixel flat pixflatave-56859-r2.fits.gz FINDOPFILE: r2: Selecting op file badpixels-56859-r2.fits.gz SDSSPROC: r2: Correcting with badpixels badpixels-56859-r2.fits.gz EXTRACT_IMAGE: r2: LOOPING THROUGH NUMBER OF ROWS TO EXTRACT ---------------- EXTRACT_IMAGE: r2: masked 274 pixels MDRP_SUPERFLAT: r2: Wavelength range = 5244.0441 10429.797 MDRP_SUPERFLAT: r2: Creating superflat from 703 fibers MDRP_FIBERFLAT: r2: Number of fiberflat points LE 0 = 707652 ML_QAIFUFLAT: r2: Normalizing to 4th highest value of 1.09142 ML_MATCHMJD: r2: Using /uufs/chpc.utah.edu/common/home/sdss05/software/svn.sdss.org/repo/manga/mangacore/v1_2_3/ifuflat/cart03/56897 MDRP_CALIB: r2: Writing calibration structure /uufs/chpc.utah.edu/common/home/sdss03/mangawork/manga/spectro/redux/v1_5_4/8606/57163/calibstruct-r2.sav MDRP_CALIB: r2: Elapsed time = 1727. seconds MDRP_REDUCE: r2: FINISHED CALIBRATION--------------- MDRP_REDUCE: r2: CALIB KEYWORD SET. SKIPPING SCIENCE AND ONLY REDUCING CALIBRATION FILES! MDRP_REDUCE: Elapsed time = 1727. seconds MDRP_REDUCE2D: Error. No science extractions were done. Problem with calibration files for camera r2 MDRP_REDUCE2D: Continuing with next camera MDRP_REDUCE2D: Time to extract/sky-sub all cameras = 6677. seconds MDRP_REDUCE2D: CALIB keyword set, or not all cameras processed. Skipping flux calibration. MDRP_REDUCE2D: Time to flux calibration = 0. seconds MDRP_REDUCE2D: Max memory usage = 1573.2 MB MDRP_REDUCE2D: Total time for MDRP_REDUCE2D = 6679. seconds MDRP_REDUCE2D: Successful completion of MDRP_REDUCE2D at Fri Mar 11 15:08:08 2016