/home/sdss3/products/Linux64/sqlalchemy/0.7.10/lib/python2.7/site-packages/sqlalchemy/engine/reflection.py:49: SAWarning: Skipped unsupported reflection of expression-based index q3c_field_idx
  ret = fn(self, con, *args, **kw)
2014-07-17 16:55:55.861Z root             30 Actor.py:110 reading config file /home/sdss3/products/Linux64/apogeeql/v1_5_3a/etc/apogeeql.cfg
new rollover = 51364.14 s from now, at time.struct_time(tm_year=2014, tm_mon=7, tm_mday=18, tm_hour=7, tm_min=12, tm_sec=0, tm_wday=4, tm_yday=199, tm_isdst=0)

2014-07-17 16:55:55.934Z root             30 sdss3logging.py:280 checking for stderr on <logging.StreamHandler object at 0x4ab4c90>,<open file '<stderr>', mode 'w' at 0x7f2082bae1e0>
2014-07-17 16:55:55.934Z root             30 sdss3logging.py:287 disabling all but critical stderr output on <logging.StreamHandler object at 0x4ab4c90>,<open file '<stderr>', mode 'w' at 0x7f2082bae1e0>
% Compiled module: APQR_WRAPPER.
% Compiled module: APWAVECAL_CHIP.
% Compiled module: APGETDIR.
% Compiled module: APGUNDEF.
% Compiled module: ADDSLASH.
% Compiled module: APQL_DEFSYS.
% Compiled module: APGETDIR.
% Compiled module: APGUNDEF.
% Compiled module: ADDSLASH.
% Compiled module: CALDAT.
% Compiled module: APFILEINFO.
% Compiled module: STRSPLIT.
% Compiled module: FIRST_EL.
% Compiled module: HEADFITS.
% Compiled module: FXPOSIT.
% Compiled module: FXMOVE.
% Compiled module: MRD_HREAD.
% Compiled module: FXPAR.
% Compiled module: GETTOK.
% Compiled module: VALID_NUM.
% Compiled module: MRD_SKIP.
% Compiled module: SXPAR.
% Compiled module: GETMJD5.
% Compiled module: JULDAY.
% Compiled module: DATE2JD.
% Compiled module: CHECK_DATEFORMAT.
% Compiled module: REVERSE.
% Compiled module: MRDFITS.
% Compiled module: MATCH.
% Compiled module: APFILEINFO.
% Compiled module: STRSPLIT.
% Compiled module: FIRST_EL.
% Compiled module: HEADFITS.
% Compiled module: FXPOSIT.
% Compiled module: FXMOVE.
% Compiled module: MRD_HREAD.
% Compiled module: FXPAR.
% Compiled module: GETTOK.
% Compiled module: VALID_NUM.
% Compiled module: MRD_SKIP.
% Compiled module: SXPAR.
% Compiled module: GETMJD5.
% Compiled module: JULDAY.
% Compiled module: DATE2JD.
% Compiled module: CHECK_DATEFORMAT.
% Compiled module: MRD_STRUCT.
% Compiled module: REVERSE.
Connecting from apqr_wrapper to apogeeql through: localhost   10039
% Loaded DLM: IDL_IDLBRIDGE.
% Compiled module: IMPORTASCII.
% Compiled module: STRESS.
% Compiled module: STREP.
% Compiled module: READ_ASCII.
% Compiled module: QUERY_ASCII.
% Compiled module: UNIQ.
Connecting from apql_wrapper to apogeeql through: localhost   10038
% Loaded DLM: IDL_IDLBRIDGE.
% Error opening file. File: 
1 qr Message = PING
% Compiled module: WRITELINE.
2 qr Message = STARTING
% Error opening file. File: 
1 ql Message = PING
% Compiled module: WRITELINE.
plugmaps/plPlugMapA-7367-56847-01.par
apqr_wrapper  PLUGMAPINFO  values= 7367 56847 1
/data-ql/plugmaps/plPlugMapA-7367-56847-01.par
4 qr Message = 
plugMapInfo=7367,56847,1,/data-ql/plugmaps/plPlugMapA-7367-56847-01.par
apqr_wrapper  PLUGMAPINFO  values= 7367 56847 1
/data-ql/plugmaps/plPlugMapA-7367-56847-01.par
2 ql Message = STARTING
3 ql Message = 
plugMapInfo=7367,56847,1,/data-ql/plugmaps/plPlugMapA-7367-56847-01.par
% Compiled module: APLOADPLUGMAP.
% Compiled module: YANNY_READ.
% Compiled module: FILEANDPATH.
% Compiled module: FDECOMP.
% Compiled module: NUMLINES.
% Compiled module: HOGG_UNQUOTED_REGEX.
% Compiled module: HOGG_STRSPLIT.
% Compiled module: YANNY_FREE.
% Compiled module: ADD_TAG.
% Compiled module: COMBINE_STRUCTS.
% Compiled module: COPY_STRUCT.
% Compiled module: YANNY_PAR.
% Compiled module: STR_SEP.
% Compiled module: ROTSPHCEN.
% Compiled module: ROTSPH.
% Compiled module: GET_SQL_COL.
% Compiled module: GET_SQL_SETUP.
% Compiled module: APQL_GET_PREVEXP.
4 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
5 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
6 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
7 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
8 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
9 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
10 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
11 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
12 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
13 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
14 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
15 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

16 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-001.fits,71762,1,10
% Compiled module: FITS_READ.
% Compiled module: FITS_OPEN.
% Compiled module: SXDELPAR.
% Compiled module: FITS_CLOSE.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

17 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-002.fits,71762,2,10
% Compiled module: APQL.
Processing /data-ql/data/56856/apRaw-12940001-002.fits
APEXTRACT...
% Compiled module: APEXTRACT.
% Compiled module: POLY.
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
% Compiled module: APQL_FITSHEADER.
dt = 2.9480510 sec
% Compiled module: PUSH.
% Compiled module: FILEPATH.
% Compiled module: APQL_DBINSERT.
% Restored file: IDL_IDLBRIDGE::EXECUTETIMER.
% Compiled module: GET_SQL_COL.
% Compiled module: GET_SQL_SETUP.
% Compiled module: IDL_SQL_DEFSYSV.
libGL error: failed to load driver: swrast
libGL error: Try again with LIBGL_DEBUG=verbose for more details.
% Compiled module: XMANAGER.
% Compiled module: AVG.
<PtrHeapVar34>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940001-002.fits
% Compiled module: EXEC_SQL.
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

18 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-003.fits,71762,3,10
Processing /data-ql/data/56856/apRaw-12940001-003.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.8717120 sec
% Compiled module: APQL_DBINSERT_CALLBACK.
<PtrHeapVar38>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940001-003.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

19 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-004.fits,71762,4,10
Processing /data-ql/data/56856/apRaw-12940001-004.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.4677968 sec
<PtrHeapVar42>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940001-004.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

20 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-005.fits,71762,5,10
Processing /data-ql/data/56856/apRaw-12940001-005.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.3856690 sec
<PtrHeapVar46>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940001-005.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

21 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-006.fits,71762,6,10
Processing /data-ql/data/56856/apRaw-12940001-006.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
% Compiled module: APQL_PLOTSPEC.
APQL_PLOTARRAYS ...
% Compiled module: APQL_PLOTARRAYS.
% Compiled module: ZSCALE.
% Compiled module: GOODPOLY.
% Compiled module: BADPAR.
% Compiled module: POLY_FIT.
% Compiled module: STDEV.
APQL_FITSHEADER ...
dt = 3.3179610 sec
<PtrHeapVar50>  UINT      = Array[6144]
<PtrHeapVar51>  UINT      = Array[6144]
<PtrHeapVar52>  UINT      = Array[6144]
<PtrHeapVar53>  UINT      = Array[6144]
<PtrHeapVar54>  UINT      = Array[6144]
<PtrHeapVar55>  UINT      = Array[6144]
<PtrHeapVar56>  UINT      = Array[6144]
<PtrHeapVar57>  UINT      = Array[6144]
<PtrHeapVar58>  UINT      = Array[6144]
<PtrHeapVar59>  BYTE      = Array[768, 100]
<PtrHeapVar60>  BYTE      = Array[768, 100]
<PtrHeapVar61>  BYTE      = Array[768, 100]
<PtrHeapVar62>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940001-006.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Inserting quicklook60 information
% Compiled module: SET_SQL_COLARRAY.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

22 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-007.fits,71762,7,10
Processing /data-ql/data/56856/apRaw-12940001-007.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.8016131 sec
<PtrHeapVar66>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940001-007.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

23 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-008.fits,71762,8,10
Processing /data-ql/data/56856/apRaw-12940001-008.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.5557270 sec
<PtrHeapVar70>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940001-008.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

24 ql Message = UTR=/data-ql/data/56856/apRaw-12940001-009.fits,71762,9,10
Processing /data-ql/data/56856/apRaw-12940001-009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.3108718 sec
<PtrHeapVar74>  STRUCT    = -> <Anonymous> Array[1]
25 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Inserting basic information for  -> apRaw-12940001-009.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

5 qr Message = UTR=DONE,12940001,56856,71762
Processing /data-ql/data/56856/apRaw-12940001-010.fits
Number of running qrBridge processes:            1
Number of valid qrBridge objects:            1  res=   1
% Restored file: IDL_IDLBRIDGE::EXECUTETIMER.
libGL error: failed to load driver: swrast
libGL error: Try again with LIBGL_DEBUG=verbose for more details.
% Compiled module: APGUNDEF.

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 17:47:39 2014
% Compiled module: APGETDIR.
% Compiled module: ADDSLASH.
% Compiled module: XMANAGER.
Directory /data/apogee/quickred/56856/ does NOT exist.  Creating it.
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940001  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

% Compiled module: APQBUNDLE.
Nfiles = 10 for 12940001
% Compiled module: FITS_READ.
% Compiled module: FITS_OPEN.
APEXTRACT...
% Compiled module: SXPAR.
% Compiled module: GETTOK.
% Compiled module: SXDELPAR.
% Compiled module: FITS_CLOSE.
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940001.fits
% Compiled module: SXADDPAR.
% Compiled module: FITS_ADD_CHECKSUM.
% Compiled module: CHECKSUM32.
% Compiled module: N_BYTES.
% Compiled module: IS_IEEE_BIG.
% Compiled module: FITS_ASCII_ENCODE.
% Compiled module: MWRFITS.
% Compiled module: FXPAR.
% Compiled module: FXADDPAR.
% Compiled module: VALID_NUM.
APEXTRACT...
% Compiled module: FITS_TEST_CHECKSUM.
% Compiled module: HOST_TO_IEEE.
% Compiled module: REVERSE.
% Compiled module: DETABIFY.
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.3212888 sec
<PtrHeapVar78>  STRUCT    = -> <Anonymous> Array[1]
27 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940001-010.fits
Inserting S/N information
Inserting exposure_pk information 71762
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

28 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-001.fits,71763,1,10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

29 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-002.fits,71763,2,10
Processing /data-ql/data/56856/apRaw-12940002-002.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
dt = 25.257425 sec

Step 2 - Collapsing the datacube
--------------------------------

% Compiled module: AP3DQUICK.
% Compiled module: HEADFITS.
% Compiled module: FXPOSIT.
% Compiled module: MRD_HREAD.
Processing /data/apogee/archive/56856/apR-a-12940001.fits  Nreads=10
APQL_FITSHEADER ...
dt = 2.8791242 sec
<PtrHeapVar83>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-002.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
% Compiled module: MAD.
Using FOWLER sampling. NFOWLER=5
% Compiled module: MEAN.
% Compiled module: MOMENT.
% Compiled module: SXADDHIST.
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940001.fits
Saving FLUX/ERR as LONG instead of FLOAT
% Compiled module: FITS_WRITE.
% Compiled module: MKHDR.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 4.0498021 sec
% Compiled module: PUSH.

Processing /data/apogee/archive/56856/apR-b-12940001.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940001.fits
Saving FLUX/ERR as LONG instead of FLOAT
30 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-003.fits,71763,3,10
Processing /data-ql/data/56856/apRaw-12940002-003.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 1.9552090 sec
<PtrHeapVar87>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-003.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
dt = 6.8196158 sec

Processing /data/apogee/archive/56856/apR-c-12940001.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940001.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 4.0807362 sec


Step 3 - Extracting the spectra
-------------------------------
% Compiled module: AP2DPROC.
% Compiled module: APFILEINFO.
% Compiled module: STRSPLIT.
% Compiled module: FIRST_EL.
% Compiled module: FXMOVE.
% Compiled module: MRD_SKIP.
% Compiled module: GETMJD5.
% Compiled module: JULDAY.
% Compiled module: DATE2JD.
% Compiled module: CHECK_DATEFORMAT.

Extracting file /data/apogee/quickred/56856/12940001
--------------------------------------------------
MJD5 = 56856
% Compiled module: APLOADFRAME.
 Processing chip a - ap2D-a-12940001.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
% Compiled module: MRDFITS.
% Compiled module: MATCH.
% Compiled module: MRD_STRUCT.
No signal was seen on any fibers for chip        0
% Compiled module: STRINGIZE.
% Compiled module: STRMULT.
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
% Compiled module: TRACESET2XY.
% Compiled module: TAG_EXIST.
% Compiled module: DJS_LAXISGEN.
% Compiled module: FPOLY.
% Compiled module: FLEGENDRE.
31 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-004.fits,71763,4,10
Processing /data-ql/data/56856/apRaw-12940002-004.fits
% Compiled module: AP_EXTRACT_IMAGE.
 ROW NITER SIG(med) CHI^2
% Compiled module: AP_EXTRACT_ROW.
% Compiled module: IDLUTILS_SO_EXT.
% Compiled module: FILEPATH.
% Compiled m
% Compiled module: SDSS_FLAGVAL.
% Compiled module: YANNY_READ.
% Compiled module: FILEANDPATH.
% Compiled module: FDECOMP.
% Compiled module: NUMLINES.
% Compiled module: HOGG_UNQUOTED_REGEX.
% Compiled module: HOGG_STRSPLIT.
% Compiled module: YANNY_FREE.
% Compiled module: CALCFLUX.
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.8831542 sec
<PtrHeapVar91>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-004.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

% Compiled module: SPLOG.
% Compiled module: STR_SEP.
  AP_EXTRACT_IMAGE: masked  3035 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940001.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940001.fits

 Processing chip b - ap2D-b-12940001.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
No signal was seen on any fibers for chip        1
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
32 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-005.fits,71763,5,10
Processing /data-ql/data/56856/apRaw-12940002-005.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.2078211 sec
<PtrHeapVar95>  STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-005.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

  AP_EXTRACT_IMAGE: masked  5301 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940001.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940001.fits

 Processing chip c - ap2D-c-12940001.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
No signal was seen on any fibers for chip        2
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
33 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-006.fits,71763,6,10
Processing /data-ql/data/56856/apRaw-12940002-006.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 2.8068600 sec
<PtrHeapVar99>  UINT      = Array[6144]
<PtrHeapVar100> UINT      = Array[6144]
<PtrHeapVar101> UINT      = Array[6144]
<PtrHeapVar102> UINT      = Array[6144]
<PtrHeapVar103> UINT      = Array[6144]
<PtrHeapVar104> UINT      = Array[6144]
<PtrHeapVar105> UINT      = Array[6144]
<PtrHeapVar106> UINT      = Array[6144]
<PtrHeapVar107> UINT      = Array[6144]
<PtrHeapVar108> BYTE      = Array[768, 100]
<PtrHeapVar109> BYTE      = Array[768, 100]
<PtrHeapVar110> BYTE      = Array[768, 100]
<PtrHeapVar111> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-006.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
Inserting quicklook60 information
  AP_EXTRACT_IMAGE: masked  3914 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940001.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940001.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
% Compiled module: APZIP.
% Compiled module: LOADINPUT.
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940001.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
% Compiled module: MKTEMP.
34 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-007.fits,71763,7,10
Processing /data-ql/data/56856/apRaw-12940002-007.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.5677390 sec
<PtrHeapVar115> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-007.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

35 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-008.fits,71763,8,10
Processing /data-ql/data/56856/apRaw-12940002-008.fits
Step II: Subtracting average dCounts
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.0782590 sec
<PtrHeapVar119> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-008.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

36 ql Message = UTR=/data-ql/data/56856/apRaw-12940002-009.fits,71763,9,10
Processing /data-ql/data/56856/apRaw-12940002-009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 1.9801171 sec
<PtrHeapVar123> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940002-009.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
Step III: Compressing with fpack
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

6 qr Message = UTR=DONE,12940002,56856,71763
-12940002-010.fits,71763,10,10
Processing /data-ql/data/56856/apRaw-12940002-010.fits
Number of running qrBridge processes:            1
Number of valid qrBridge objects:            1  res=   1
---------> Starting a new apquickred Bridge
Input file size = 104984640 bytes
Output file size = 50408640 bytes
Compression ratio = 2.08267
dt = 36.650328 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940001.fits<< (104.98 MB)
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
% Error opening file. File: 
% Compiled module: APQUICKRED.
in APQUICKRED
% Compiled module: APGUNDEF.

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 17:49:29 2014
% Compiled module: APGETDIR.
% Compiled module: ADDSLASH.
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940002  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

% Compiled module: APQBUNDLE.
Nfiles = 10 for 12940002
% Compiled module: FITS_READ.
% Compiled module: FITS_OPEN.
% Compiled module: SXPAR.
% Compiled module: GETTOK.
% Compiled module: SXDELPAR.
% Compiled module: FITS_CLOSE.
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940002.fits
% Compiled module: SXADDPAR.
% Compiled module: FITS_ADD_CHECKSUM.
% Compiled module: CHECKSUM32.
% Compiled module: N_BYTES.
% Compiled module: IS_IEEE_BIG.
% Compiled module: FITS_ASCII_ENCODE.
% Compiled module: MWRFITS.
% Compiled module: FXPAR.
% Compiled module: FXADDPAR.
% Compiled module: VALID_NUM.
% Compiled module: FITS_TEST_CHECKSUM.
APEXTRACT...
% Compiled module: HOST_TO_IEEE.
% Compiled module: REVERSE.
% Compiled module: DETABIFY.
APQL_FITSHEADER ...
dt = 2.4580019 sec
<PtrHeapVar127> STRUCT    = -> <Anonymous> Array[1]
38 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940002-010.fits
Inserting S/N information
Inserting exposure_pk information 71763
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

39 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-001.fits,71764,1,10
Step II: Subtracting average dCounts
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

40 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-002.fits,71764,2,10
Processing /data-ql/data/56856/apRaw-12940003-002.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 1.9567719 sec
<PtrHeapVar132> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-002.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
Step III: Compressing with fpack
dt = 26.877060 sec

Step 2 - Collapsing the datacube
--------------------------------

% Compiled module: AP3DQUICK.
% Compiled module: HEADFITS.
% Compiled module: FXPOSIT.
% Compiled module: MRD_HREAD.
Processing /data/apogee/archive/56856/apR-a-12940002.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
% Compiled module: MAD.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Using FOWLER sampling. NFOWLER=5
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

% Compiled module: MEAN.
% Compiled module: MOMENT.
% Compiled module: SXADDHIST.
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940002.fits
Saving FLUX/ERR as LONG instead of FLOAT
% Compiled module: FITS_WRITE.
% Compiled module: MKHDR.
dt = 5.5708649 sec
% Compiled module: PUSH.
41 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-003.fits,71764,3,10
Processing /data-ql/data/56856/apRaw-12940003-003.fits

Processing /data/apogee/archive/56856/apR-b-12940002.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940002.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.1008830 sec
<PtrHeapVar136> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-003.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
dt = 3.8860741 sec
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Input file size = 104984640 bytes
Output file size = 48306240 bytes
Compression ratio = 2.17331
dt = 39.229802 sec

3/3

Processing /data/apogee/archive/56856/apR-c-12940002.fits  Nreads=10
Compressing >>/data/apogee/archive/56856/apR-c-12940001.fits<< (104.98 MB)
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Nreads = 10
Step I: Making dCounts temporary file
42 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-004.fits,71764,4,10
Processing /data-ql/data/56856/apRaw-12940003-004.fits
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940002.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APEXTRACT...
dt = 9.0711319 sec


Step 3 - Extracting the spectra
-------------------------------
% Compiled module: AP2DPROC.
% Compiled module: APFILEINFO.
% Compiled module: STRSPLIT.
% Compiled module: FIRST_EL.
% Compiled module: FXMOVE.
% Compiled module: MRD_SKIP.
% Compiled module: GETMJD5.
% Compiled module: JULDAY.
% Compiled module: DATE2JD.
% Compiled module: CHECK_DATEFORMAT.

Extracting file /data/apogee/quickred/56856/12940002
--------------------------------------------------
MJD5 = 56856
% Compiled module: APLOADFRAME.
APQL_FITSHEADER ...
dt = 4.4027140 sec
<PtrHeapVar140> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-004.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

 Processing chip a - ap2D-a-12940002.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
% Compiled module: MRDFITS.
% Compiled module: MATCH.
% Compiled module: MRD_STRUCT.
No signal was seen on any fibers for chip        0
% Compiled module: STRINGIZE.
% Compiled module: STRMULT.
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
% Compiled module: TRACESET2XY.
% Compiled module: TAG_EXIST.
% Compiled module: DJS_LAXISGEN.
% Compiled module: FPOLY.
% Compiled module: FLEGENDRE.
% Compiled module: AP_EXTRACT_IMAGE.
 ROW NITER SIG(med) CHI^2
% Compiled module: AP_EXTRACT_ROW.
% Compiled module: IDLUTILS_SO_EXT.
43 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-005.fits,71764,5,10
Processing /data-ql/data/56856/apRaw-12940003-005.fits
% Compiled module: FILEPATH.
% Compiled module: PIXELMASK_BITS.
% Compiled module: SDSS_FLAGVAL.
% Compiled module: YANNY_READ.
% Compiled module: FILEANDPATH.
% Compiled module: FDECOMP.
% Compiled module: NUMLINES.
% Compiled module: HOGG_UNQUOTED_REGEX.
% Compiled module: HOGG_STRSPLIT.
% Compiled module: YANNY_FREE.
% Compiled module: CALCFLUX.
APEXTRACT...
Step II: Subtracting average dCounts
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.0403540 sec
<PtrHeapVar144> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-005.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

% Compiled module: SPLOG.
% Compiled module: STR_SEP.
  AP_EXTRACT_IMAGE: masked  3629 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940002.fits
Saving FLUX/ERR as LONG instead of FLOAT
44 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-006.fits,71764,6,10
Processing /data-ql/data/56856/apRaw-12940003-006.fits
Step III: Compressing with fpack
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940002.fits
APEXTRACT...

 Processing chip b - ap2D-b-12940002.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
No signal was seen on any fibers for chip        1
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 2.8964491 sec
<PtrHeapVar148> UINT      = Array[6144]
<PtrHeapVar149> UINT      = Array[6144]
<PtrHeapVar150> UINT      = Array[6144]
<PtrHeapVar151> UINT      = Array[6144]
<PtrHeapVar152> UINT      = Array[6144]
<PtrHeapVar153> UINT      = Array[6144]
<PtrHeapVar154> UINT      = Array[6144]
<PtrHeapVar155> UINT      = Array[6144]
<PtrHeapVar156> UINT      = Array[6144]
<PtrHeapVar157> BYTE      = Array[768, 100]
<PtrHeapVar158> BYTE      = Array[768, 100]
<PtrHeapVar159> BYTE      = Array[768, 100]
<PtrHeapVar160> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-006.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
Inserting quicklook60 information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

45 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-007.fits,71764,7,10
Processing /data-ql/data/56856/apRaw-12940003-007.fits
  AP_EXTRACT_IMAGE: masked  6453 pixels
 file size = 48035520 bytes
Compression ratio = 2.18556
dt = 36.959673 sec

Compressing the 2D images with FPACK
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940002.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap2D-a-12940001.fits
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940002.fits
APEXTRACT...

 Processing chip c - ap2D-c-12940002.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Compressing /data/apogee/quickred/56856/ap2D-b-12940001.fits
No signal was seen on any fibers for chip        2
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.0401649 sec
<PtrHeapVar164> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-007.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap2D-c-12940001.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940001.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940001.fits
Compressing /data/apogee/quickred/56856/ap1D-c-12940001.fits
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940001.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940001.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940001.fitsProStep 5 - Database prep and insert
-----------------
% Compiled module: APQUICKRED_DBPREP.
% Compiled module: ZSCALE.
% Compiled module: GOODPOLY.
% Compiled module: BADPAR.
% Compiled module: POLY_FIT.
% Compiled module: STDEV.
% Compiled module: POLY.
APEXTRACT...
% Compiled module: APQUICKRED_DBINSERT.
starting apquickred_dbinsert ...
% Compiled module: GET_SQL_COL.
% Compiled module: GET_SQL_SETUP.
% Compiled module: IDL_SQL_DEFSYSV.
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  5288 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940002.fits
Saving FLUX/ERR as LONG instead of FLOAT
Inserting Quickred data
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940002.fits
% Compiled module: REPSTR.
% Compiled module: EXEC_SQL.
APEXTRACT...
% Compiled module: SET_SQL_COLARRAY.
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
% Compiled module: APZIP.
% Compiled module: LOADINPUT.
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940002.fits<< (104.98 MB)
APQL_FITSHEADER ...
dt = 2.0899801 sec
<PtrHeapVar168> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-008.fits
Nreads = 10
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
Step I: Making dCounts temporary file
% Compiled module: MKTEMP.
Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

47 ql Message = UTR=/data-ql/data/56856/apRaw-12940003-009.fits,71764,9,10
Processing /data-ql/data/56856/apRaw-12940003-009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.7976980 sec
<PtrHeapVar172> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940003-009.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
Step II: Subtracting average dCounts
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

7 qr Message = UTR=DONE,12940003,56856,71764
Number of running qrBridge processes:            2
Number of valid qrBridge objects:            2  res=   1   1
---------> Starting a new apquickred Bridge
APEXTRACT...
APEXTRACT...
% Error opening file. File: 
% Compiled module: APQUICKRED.
in APQUICKRED
% Compiled module: APGUNDEF.

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 17:51:16 2014
% Compiled module: APGETDIR.
% Compiled module: ADDSLASH.
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940003  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

% Compiled module: APQBUNDLE.
Nfiles = 10 for 12940003
% Compiled module: FITS_READ.
% Compiled module: FITS_OPEN.
% Compiled module: SXPAR.
% Compiled module: GETTOK.
% Compiled module: SXDELPAR.
% Compiled module: FITS_CLOSE.
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940003.fits
% Compiled module: SXADDPAR.
% Compiled module: FITS_ADD_CHECKSUM.
% Compiled module: CHECKSUM32.
% Compiled module: N_BYTES.
% Compiled module: IS_IEEE_BIG.
% Compiled module: FITS_ASCII_ENCODE.
% Compiled module: MWRFITS.
APEXTRACT...
% Compiled module: FXPAR.
% Compiled module: FXADDPAR.
% Compiled module: VALID_NUM.
APQL_FITSHEADER ...
dt = 2.2009921 sec
<PtrHeapVar176> STRUCT    = -> <Anonymous> Array[1]
49 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940003-010.fits
Inserting S/N information
Inserting exposure_pk information 71764
Inserting required fits keywords error information
% Compiled module: FITS_TEST_CHECKSUM.
% Compiled module: HOST_TO_IEEE.
% Compiled module: REVERSE.
% Compiled module: DETABIFY.
Step III: Compressing with fpack
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

50 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-001.fits,71765,1,10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Input file size = 104984640 bytes
Output file size = 50454720 bytes
Compression ratio = 2.08077
dt = 52.109933 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940002.fits<< (104.98 MB)
Nreads = 10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step I: Making dCounts temporary file
Inserting exposure header information
apquickred_dbinsert completed
dt = 57.606482 sec.
dt = 252.47764 sec
dt = 37.098252 sec

Step 2 - Collapsing the datacube
--------------------------------

% Compiled module: AP3DQUICK.
% Compiled module: HEADFITS.
% Compiled module: FXPOSIT.
% Compiled module: MRD_HREAD.
Processing /data/apogee/archive/56856/apR-a-12940003.fits  Nreads=10
51 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-002.fits,71765,2,10
Processing /data-ql/data/56856/apRaw-12940004-002.fits
Card is too 
ong, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.0044770 sec
<PtrHeapVar181> STRUCT    = -> <Anonymous> Array[1]
52 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-003.fits,71765,3,10
Processing /data-ql/data/56856/apRaw-12940004-003.fits
Inserting basic information for  -> apRaw-12940004-002.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
APEXTRACT...
% Compiled module: MEAN.
% Compiled module: MOMENT.
% Compiled module: SXADDHIST.
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940003.fits
Saving FLUX/ERR as LONG instead of FLOAT
% Compiled module: FITS_WRITE.
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.1304731 sec
<PtrHeapVar185> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940004-003.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
% Compiled module: MKHDR.
53 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-004.fits,71765,4,10
Processing /data-ql/data/56856/apRaw-12940004-004.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 1.9949851 sec
<PtrHeapVar189> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940004-004.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
dt = 9.6673989 sec
% Compiled module: PUSH.

Processing /data/apogee/archive/56856/apR-b-12940003.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step II: Subtracting average dCounts
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940003.fits
Saving FLUX/ERR as LONG instead of FLOAT
54 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-005.fits,71765,5,10
Processing /data-ql/data/56856/apRaw-12940004-005.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 1.9039111 sec
<PtrHeapVar193> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940004-005.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
dt = 10.964965 sec

Processing /data/apogee/archive/56856/apR-c-12940003.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing output to: /data/apogee/quickred/56856/ap2D-c-12940003.fits
Saving FLUX/ERR as LONG instead of FLOAT
55 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-006.fits,71765,6,10
Processing /data-ql/data/56856/apRaw-12940004-006.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 2.1300921 sec
<PtrHeapVar197> UINT      = Array[6144]
<PtrHeapVar198> UINT      = Array[6144]
<PtrHeapVar199> UINT      = Array[6144]
<PtrHeapVar200> UINT      = Array[6144]
<PtrHeapVar201> UINT      = Array[6144]
<PtrHeapVar202> UINT      = Array[6144]
<PtrHeapVar203> UINT      = Array[6144]
<PtrHeapVar204> UINT      = Array[6144]
<PtrHeapVar205> UINT      = Array[6144]
<PtrHeapVar206> BYTE      = Array[768, 100]
<PtrHeapVar207> BYTE      = Array[768, 100]
<PtrHeapVar208> BYTE      = Array[768, 100]
<PtrHeapVar209> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940004-006.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
Inserting quicklook60 information
dt = 9.7983840 sec


Step 3 - Extracting the spectra
-------------------------------
% Compiled module: AP2DPROC.
% Compiled module: APFILEINFO.
% Compiled module: STRSPLIT.
% Compiled module: FIRST_EL.
% Compiled module: FXMOVE.
% Compiled module: MRD_SKIP.
% Compiled module: GETMJD5.
% Compiled module: JULDAY.
% Compiled module: DATE2JD.
% Compiled module: CHECK_DATEFORMAT.

Extracting file /data/apogee/quickred/56856/12940003
--------------------------------------------------
MJD5 = 56856
% Compiled module: APLOADFRAME.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

 Processing chip a - ap2D-a-12940003.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
% Compiled module: MRDFITS.
% Compiled module: MATCH.
% Compiled module: MRD_STRUCT.
No signal was seen on any fibers for chip        0
Step III: Compressing with fpack
% Compiled module: STRINGIZE.
% Compiled module: STRMULT.
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
% Compiled module: TRACESET2XY.
% Compiled module: TAG_EXIST.
% Compiled module: DJS_LAXISGEN.
% Compiled module: FPOLY.
% Compiled module: FLEGENDRE.
% Compiled module: AP_EXTRACT_IMAGE.
 ROW NITER SIG(med) CHI^2
% Compiled module: AP_EXTRACT_ROW.
% Compiled module: IDLUTILS_SO_EXT.
% Compiled module: FILEPATH.
% Compiled module: PIXELMASK_BITS.
% Compiled module: SDSS_FLAGVAL.
% Compiled module: YANNY_READ.
% Compiled module: FILEANDPATH.
% Compiled module: FDECOMP.
% Compiled module: NUMLINES.
% Compiled module: HOGG_UNQUOTED_REGEX.
% Compiled module: HOGG_STRSPLIT.
% Compiled module: YANNY_FREE.
% Compiled module: CALCFLUX.
56 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-007.fits,71765,7,10
Processing /data-ql/data/56856/apRaw-12940004-007.fits
Input file size = 104984640 bytes
Output file size = 48369600 bytes
Compression ratio = 2.17047
dt = 46.529477 sec

3/3

APEXTRACT...
Compressing >>/data/apogee/archive/56856/apR-c-12940002.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.0117750 sec
<PtrHeapVar213> STRUCT    = -> <Anonymous> Array[1]
57 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Inserting basic information for  -> apRaw-12940004-007.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

% Compiled module: SPLOG.
% Compiled module: STR_SEP.
  AP_EXTRACT_IMAGE: masked  5850 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940003.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940003.fits
58 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-008.fits,71765,8,10
Processing /data-ql/data/56856/apRaw-12940004-008.fits
APEXTRACT...

 Processing chip b - ap2D-b-12940003.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
APEXTRACT...
% Compiled module: POLY.
% Compiled module: GFUNC.
% Compiled module: C_CORRELATE.
% Compiled module: MAXLOC.
% Compiled module: MPFITPEAK.
% Compiled module: MPFIT.
% Compiled module: MPFITFUN.
Recentering shift = 0.152
Using Gaussian PSF fitting Extraction
APEXTRACT...
 ROW NITER SIG(med) CHI^2
APQL_FITSHEADER ...
dt = 2.0564501 sec
<PtrHeapVar217> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940004-008.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step II: Subtracting average dCounts
59 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-009.fits,71765,9,10
Processing /data-ql/data/56856/apRaw-12940004-009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.3196881 sec
<PtrHeapVar221> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940004-009.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  11026 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940003.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940003.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.


 Processing chip c - ap2D-c-12940003.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
No signal was seen on any fibers for chip        2
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Step III: Compressing with fpack
60 ql Message = UTR=/data-ql/data/56856/apRaw-12940004-010.fits,71765,10,10
Processing /data-ql/data/56856/apRaw-12940004Number of running qrBridge processes:            3
Number of valid qrBridge objects:            3  res=   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 17:53:01 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940004  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940004
APEXTRACT...
APEXTRACT...
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940004.fits
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.1964600 sec
<PtrHeapVar225> STRUCT    = -> <Anonymous> Array[1]
61 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940004-010.fits
Inserting S/N information
Inserting exposure_pk information 71765
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  9308 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940003.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940003.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
% Compiled module: APZIP.
% Compiled module: LOADINPUT.
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940003.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
% Compiled module: MKTEMP.
62 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-001.fits,71766,1,10
Input file size = 104984640 bytes
Output file size = 47998080 bytes
Compression ratio = 2.18727
dt = 42.437163 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940002.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing /data/apogee/quickred/56856/ap2D-b-12940002.fits
Compressing /data/apogee/quickred/56856/ap2D-c-12940002.fits
dt = 26.343908 sec

Step 2 - Collapsing the datacube
--------------------------------

63 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-002.fits,71766,2,10
Processing /data-ql/data/56856/apRaw-12940005-002.fits
Processing /data/apogee/archive/56856/apR-a-12940004.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.6615250 sec
<PtrHeapVar230> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-002.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940002.fits
Step II: Subtracting average dCounts
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940004.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap1D-b-12940002.fits
64 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-003.fits,71766,3,10
Processing /data-ql/data/56856/apRaw-12940005-003.fits
APEXTRACT...
dt = 10.018686 sec
Compressing /data/apogee/quickred/56856/ap1D-c-12940002.fits

APEXTRACT...
Processing /data/apogee/archive/56856/apR-b-12940004.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.2965360 sec
<PtrHeapVar234> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-003.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940002.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940002.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940002.fits.

Step 5 - Database prep and insert
--------------------------

% Compiled module: APQUICKRED_DBPREP.
% Compiled module: ZSCALE.
% Compiled module: GOODPOLY.
% Compiled module: BADPAR.
% Compiled module: POLY_FIT.
% Compiled module: STDEV.
% Compiled module: POLY.
% Compiled module: APQUICKRED_DBINSERT.
starting apquickred_dbinsert ...
% Compiled module: GET_SQL_COL.
% Compiled module: GET_SQL_SETUP.
% Compiled module: IDL_SQL_DEFSYSV.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing output to: /data/apogee/quickred/56856/ap2D-b-12940004.fits
Saving FLUX/ERR as LONG instead of FLOAT
Inserting Quickred data
% Compiled module: REPSTR.
% Compiled module: EXEC_SQL.
% Compiled module: SET_SQL_COLARRAY.
Inserting Quickred IMBINZOOM
dt = 10.190525 sec

5 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-004.fits,71766,4,10
Processing /data-ql/data/56856/apRaw-12940005-004.fits
Processing /data/apogee/archive/56856/apR-c-12940004.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.2604241 sec
<PtrHeapVar238> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-004.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
Step III: Compressing with fpack
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940004.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 4.5599160 sec


Step 3 - Extracting the spectra
-------------------------------

Extracting file /data/apogee/quickred/56856/12940004
--------------------------------------------------
MJD5 = 56856
 Processing chip a - ap2D-a-12940004.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
% Compiled module: GFUNC.
% Compiled module: C_CORRELATE.
% Compiled module: MAXLOC.
% Compiled module: MPFITPEAK.
% Compiled module: MPFIT.
% Compiled module: MPFITFUN.
Recentering shift = 0.095
Using Gaussian PSF fitting Extraction
66 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-005.fits,71766,5,10
Processing /data-ql/data/56856/apRaw-12940005-005.fits
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.0469191 sec
<PtrHeapVar242> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-005.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Input file size = 104984640 bytes
Output file size = 50518080 bytes
Compression ratio = 2.07816
dt = 51.280100 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940003.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
  AP_EXTRACT_IMAGE: masked  4371 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940004.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940004.fits
67 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-006.fits,71766,6,10
Processing /data-ql/data/56856/apRaw-12940005-006.fits

 Processing chip b - ap2D-b-12940004.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.060
Using Gaussian PSF fitting Extraction
APEXTRACT...
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 4.5967770 sec
<PtrHeapVar246> UINT      = Array[6144]
<PtrHeapVar247> UINT      = Array[6144]
<PtrHeapVar248> UINT      = Array[6144]
<PtrHeapVar249> UINT      = Array[6144]
<PtrHeapVar250> UINT      = Array[6144]
<PtrHeapVar251> UINT      = Array[6144]
<PtrHeapVar252> UINT      = Array[6144]
<PtrHeapVar253> UINT      = Array[6144]
<PtrHeapVar254> UINT      = Array[6144]
<PtrHeapVar255> BYTE      = Array[768, 100]
<PtrHeapVar256> BYTE      = Array[768, 100]
<PtrHeapVar257> BYTE      = Array[768, 100]
<PtrHeapVar258> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-006.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
Inserting quicklook60 information
68 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-007.fits,71766,7,10
Processing /data-ql/data/56856/apRaw-12940005-007.fits
APEXTRACT...
Step II: Subtracting average dCounts
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.0014949 sec
<PtrHeapVar262> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-007.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fmasked  8283 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940004.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940004.fits

 Processing chip c - ap2D-c-12940004.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Recentering shift = -0.304
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Inserting exposure header information
apquickred_dbinsert completed
dt = 48.566043 sec.
dt = 300.67005 sec
69 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-008.fits,71766,8,10
Processing /data-ql/data/56856/apRaw-12940005-008.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.4182370 sec
<PtrHeapVar266> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-008.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  6786 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940004.fits
Saving FLUX/ERR as LONG instead of FLOAT
Step III: Compressing with fpack
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940004.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940004.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
70 ql Message = UTR=/data-ql/data/56856/apRaw-12940005-009.fits,71766,9,10
Processing /data-ql/data/56856/apRaw-12940005-009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.4684608 sec
<PtrHeapVar270> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940005-009.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Input file size = 104984640 bytes
Output file size = 48464640 bytes
Compression ratio = 2.16621
dt = 44.939489 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940003.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Step II: Subtracting average dCounts
9 qr Message = UTR=DONE,12940005,56856,71766
Number of running qrBridge processes:            3
Number of valid qrBridge objects:            3  res=   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 17:54:53 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940005  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940005
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940005.fits
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too 
ong, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 5.2924030 sec
<PtrHeapVar274> STRUCT    = -> <Anonymous> Array[1]
72 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940005-010.fits
Inserting S/N information
Inserting exposure_pk information 71766
Inserting required fits keywords error information
73 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-001.fits,71767,1,10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step III: Compressing with fpack
Step II: Subtracting average dCounts
74 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-002.fits,71767,2,10
Processing /data-ql/data/56856/apRaw-12940006-002.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.0731430 sec
<PtrHeapVar279> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-002.fits
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

75 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-003.fits,71767,3,10
Processing /data-ql/data/56856/apRaw-12940006-003.fits
dt = 32.619699 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940005.fits  Nreads=10
Step III: Compressing with fpack
APEXTRACT...
Input file size = 104984640 bytes
Output file size = 50621760 bytes
Compression ratio = 2.07390
dt = 52.180293 sec

2/3

Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Compressing >>/data/apogee/archive/56856/apR-b-12940004.fits<< (104.98 MB)
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.8126140 sec
<PtrHeapVar283> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-003.fits
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing output to: /data/apogee/quickred/56856/ap2D-a-12940005.fits
Saving FLUX/ERR as LONG instead of FLOAT
76 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-004.fits,71767,4,10
Processing /data-ql/data/56856/apRaw-12940006-004.fits
APEXTRACT...
Input file size = 104984640 bytes
Output file size = 48018240 bytes
Compression ratio = 2.18635
dt = 51.232131 sec

Compressing the 2D images with FPACK
APEXTRACT...
Compressing /data/apogee/quickred/56856/ap2D-a-12940003.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 15.371591 sec

Processing /data/apogee/archive/56856/apR-b-12940005.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APQL_FITSHEADER ...
dt = 5.1494470 sec
<PtrHeapVar287> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-004.fits
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940005.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap2D-b-12940003.fits
77 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-005.fits,71767,5,10
Processing /data-ql/data/56856/apRaw-12940006-005.fits
APEXTRACT...
Step II: Subtracting average dCounts
dt = 7.5392160 sec
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Processing /data/apogee/archive/56856/apR-c-12940005.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APQL_FITSHEADER ...
dt = 6.2740600 sec
<PtrHeapVar291> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-005.fits
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap2D-c-12940003.fits
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940005.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing the 1D spectral files with FPACK
78 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-006.fits,71767,6,10
Processing /data-ql/data/56856/apRaw-12940006-006.fits
Compressing /data/apogee/quickred/56856/ap1D-a-12940003.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 10.961405 sec
Compressing /data/apogee/quickred/56856/ap1D-b-12940003.fits
APEXTRACT...


Step 3 - Extracting the spectra
-------------------------------

Extracting file /data/apogee/quickred/56856/12940005
--------------------------------------------------
MJD5 = 56856
Compressing /data/apogee/quickred/56856/ap1D-c-12940003.fits
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 5.7944069 sec
<PtrHeapVar295> UINT      = Array[6144]
<PtrHeapVar296> UINT      = Array[6144]
<PtrHeapVar297> UINT      = Array[6144]
<PtrHeapVar298> UINT      = Array[6144]
<PtrHeapVar299> UINT      = Array[6144]
<PtrHeapVar300> UINT      = Array[6144]
<PtrHeapVar301> UINT      = Array[6144]
<PtrHeapVar302> UINT      = Array[6144]
<PtrHeapVar303> UINT      = Array[6144]
<PtrHeapVar304> BYTE      = Array[768, 100]
<PtrHeapVar305> BYTE      = Array[768, 100]
<PtrHeapVar306> BYTE      = Array[768, 100]
<PtrHeapVar307> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-006.fits
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
Inserting quicklook60 information
79 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-007.fits,71767,7,10
Processing /data-ql/data/56856/apRaw-12940006-007.fits
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940003.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940003.fits.
 Processing chip a - ap2D-a-12940005.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
APEXTRACT...
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940003.fits.

Step 5 - Database prep and insert
--------------------------

% Compiled module: APQUICKRED_DBPREP.
% Compiled module: GFUNC.
% Compiled module: C_CORRE
% Compiled module: MAXLOC.
% Compiled module: GOODPOLY.
% Compiled module: BADPAR.
% Compiled module: MPFIT.
% Compiled module: MPFITFUN.
Recentering shift = 0.129
Using Gaussian PSF fitting Extraction
% Compiled module: POLY_FIT.
% Compiled module: STDEV.
% Compiled module: APQUICKRED_DBINSERT.
starting apquickred_dbinsert ...
% Compiled module: GET_SQL_COL.
% Compiled module: GET_SQL_SETUP.
% Compiled module: IDL_SQL_DEFSYSV.
APEXTRACT...
 ROW NITER SIG(med) CHI^2
Step III: Compressing with fpack
Inserting Quickred data
% Compiled module: REPSTR.
% Compiled module: EXEC_SQL.
% Compiled module: SET_SQL_COLARRAY.
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting Quickred IMBINZOOM
APQL_FITSHEADER ...
dt = 3.5621190 sec
<PtrHeapVar311> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-007.fits
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
Inserting Quickred SPECTRUM
80 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-008.fits,71767,8,10
Processing /data-ql/data/56856/apRaw-12940006-008.fits
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  2482 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940005.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940005.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
I Processing chip b - ap2D-b-12940005.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
0 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940004.fits<< (104.98 MB)
Recentering shift = 0.147
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
APQL_FITSHEADER ...
dt = 7.1206219 sec
<PtrHeapVar315> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-008.fits
Nreads = 10
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
Step I: Making dCounts temporary file
81 ql Message = UTR=/data-ql/data/56856/apRaw-12940006-009.fits,71767,9,10
Processing /data-ql/data/56856/apRaw-12940006-009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.5672410 sec
<PtrHeapVar319> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940006-009.fits
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  4638 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940005.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940005.fits

 Processing chip c - ap2D-c-12940005.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Recentering shift = 0.016
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
10 qr Message = UTR=DONE,12940006,56856,71767
Number of running qrBridge proProcessing /data-ql/data/56856/apRaw-12940006-010.fits
           3  res=   1   1   1
---------> Starting a new apquickred Bridge
APEXTRACT...
APEXTRACT...
% Error opening file. File: 
% Compiled module: APQUICKRED.
in APQUICKRED
% Compiled module: APGUNDEF.

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 17:56:38 2014
% Compiled module: APGETDIR.
% Compiled module: ADDSLASH.
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940006  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

% Compiled module: APQBUNDLE.
Nfiles = 10 for 12940006
% Compiled module: FITS_READ.
% Compiled module: FITS_OPEN.
% Compiled module: SXPAR.
% Compiled module: GETTOK.
% Compiled module: SXDELPAR.
Step II: Subtracting average dCounts
% Compiled module: FITS_CLOSE.
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940006.fits
% Compiled module: SXADDPAR.
% Compiled module: FITS_ADD_CHECKSUM.
% Compiled module: CHECKSUM32.
% Compiled module: N_BYTES.
% Compiled module: IS_IEEE_BIG.
% Compiled module: FITS_ASCII_ENCODE.
% Compiled module: MWRFITS.
% Compiled module: FXPAR.
% Compiled module: FXADDPAR.
% Compiled module: VALID_NUM.
% Compiled module: FITS_TEST_CHECKSUM.
% Compiled module: HOST_TO_IEEE.
% Compiled module: REVERSE.
APQL_FITSHEADER ...
dt = 2.8735130 sec
<PtrHeapVar323> STRUCT    = -> <Anonymous> Array[1]
83 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940006-010.fits
% Compiled module: DETABIFY.
Inserting S/N information
Inserting exposure_pk information 71767
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  3731 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940005.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940005.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940005.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Inserting exposure header information
84 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-001.fits,71768,1,10
apquickred_dbinsert completed
dt = 42.564240 sec.
dt = 337.01256 sec
Step III: Compressing with fpack
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

85 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-002.fits,71768,2,10
Processing /data-ql/data/56856/apRaw-12940007-002.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.4375372 sec
<PtrHeapVar328> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940007-002.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
Step II: Subtracting average dCounts
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 28.796723 sec

Step 2 - Collapsing the datacube
--------------------------------

% Compiled module: AP3DQUICK.
% Compiled module: HEADFITS.
% Compiled module: FXPOSIT.
% Compiled module: MRD_HREAD.
Processing /data/apogee/archive/56856/apR-a-12940006.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
% Compiled module: MAD.
Using FOWLER sampling. NFOWLER=5
86 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-003.fits,71768,3,10
Processing /data-ql/data/56856/apRaw-12940007-003.fits
Input file size = 104984640 bytes
Output file size = 48121920 bytes
Compression ratio = 2.18164
dt = 49.723412 sec

Compressing the 2D images with FPACK
APEXTRACT...
Compressing /data/apogee/quickred/56856/ap2D-a-12940004.fits
% Compiled module: MEAN.
% Compiled module: MOMENT.
% Compiled module: SXADDHIST.
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940006.fits
Saving FLUX/ERR as LONG instead of FLOAT
% Compiled module: FITS_WRITE.
% Compiled module: MKHDR.
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 9.9540060 sec
% Compiled module: PUSH.

Processing /data/apogee/archive/56856/apR-b-12940006.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APQL_FITSHEADER ...
dt = 4.5632031 sec
<PtrHeapVar332> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940007-003.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap2D-b-12940004.fits
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940006.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap2D-c-12940004.fits
ts,71768,4,10
Processing /data-ql/data/56856/apRaw-12940007-004.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
dt = 10.663117 sec

Processing /data/apogee/archive/56856/apR-c-12940006.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 6.3999920 sec
<PtrHeapVar336> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940007-004.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940006.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing the 1D spectral files with FPACK
88 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-005.fits,71768,5,10
Processing /data-ql/data/56856/apRaw-12940007-005.fits
Compressing /data/apogee/quickred/56856/ap1D-a-12940004.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940004.fits
APEXTRACT...
Input file size = 104984640 bytes
Output file size = 50734080 bytes
Compression ratio = 2.06931
dt = 50.658715 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940005.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 10.446066 sec
Compressing /data/apogee/quickred/56856/ap1D-c-12940004.fits
APEXTRACT...


Step 3 - Extracting the spectra
-------------------------------
% Compiled module: AP2DPROC.
% Compiled module: APFILEINFO.
% Compiled module: STRSPLIT.
% Compiled module: FIRST_EL.
% Compiled module: FXMOVE.
% Compiled module: MRD_SKIP.
% Compiled module: GETMJD5.
% Compiled module: JULDAY.
% Compiled module: DATE2JD.
% Compiled module: CHECK_DATEFORMAT.

Extracting file /data/apogee/quickred/56856/12940006
--------------------------------------------------
MJD5 = 56856
APEXTRACT...
% Compiled module: APLOADFRAME.
APQL_FITSHEADER ...
dt = 9.6706100 sec
<PtrHeapVar340> STRUCT    = -> <Anonymous> Array[1]
89 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Inserting basic information for  -> apRaw-12940007-005.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
90 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-006.fits,71768,6,10
Processing /data-ql/data/56856/apRaw-12940007-006.fits
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940004.fits.
APEXTRACT...
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940004.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940004.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
APEXTRACT...
Inserting Quickred SPECTRUM
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 3.0191770 sec
<PtrHeapVar344> UINT      = Array[6144]
<PtrHeapVar345> UINT      = Array[6144]
<PtrHeapVar346> UINT      = Array[6144]
<PtrHeapVar347> UINT      = Array[6144]
<PtrHeapVar348> UINT      = Array[6144]
<PtrHeapVar349> UINT      = Array[6144]
<PtrHeapVar350> UINT      = Array[6144]
<PtrHeapVar351> UINT      = Array[6144]
<PtrHeapVar352> UINT      = Array[6144]
<PtrHeapVar353> BYTE      = Array[768, 100]
<PtrHeapVar354> BYTE      = Array[768, 100]
<PtrHeapVar355> BYTE      = Array[768, 100]
<PtrHeapVar356> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940007-006.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
Inserting quicklook60 information
 Processing chip a - ap2D-a-12940006.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
% Compiled module: MRDFITS.
% Compiled module: MATCH.
% Compiled module: MRD_STRUCT.
% Compiled module: POLY.
% Compiled module: GFUNC.
% Compiled module: C_CORRELATE.
% Compiled module: MAXLOC.
% Compiled module: MPFITPEAK.
% Compiled module: MPFIT.
% Compiled module: MPFITFUN.
% Compiled module: STRINGIZE.
Recentering shift = 0.249
Using Gaussian PSF fitting Extraction
% Compiled module: TRACESET2XY.
% Compiled module: TAG_EXIST.
% Compiled module: DJS_LAXISGEN.
% Compiled module: FPOLY.
% Compiled module: FLEGENDRE.
 be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

% Compiled module: AP_EXTRACT_IMAGE.
 ROW NITER SIG(med) CHI^2
% Compiled module: AP_EXTRACT_ROW.
% Compiled module: IDLUTILS_SO_EXT.
% Compiled module: FILEPATH.
% Compiled module: PIXELMASK_BITS.
% Compiled module: SDSS_FLAGVAL.
% Compiled module: YANNY_READ.
% Compiled module: FILEANDPATH.
% Compiled module: FDECOMP.
% Compiled module: NUMLINES.
% Compiled module: HOGG_UNQUOTED_REGEX.
% Compiled module: HOGG_STRSPLIT.
% Compiled module: YANNY_FREE.
% Compiled module: CALCFLUX.
91 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-007.fits,71768,7,10
Processing /data-ql/data/56856/apRaw-12940007-007.fits
APEXTRACT...
Step II: Subtracting average dCounts
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.5829139 sec
<PtrHeapVar360> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940007-007.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
% Compiled module: SPLOG.
% Compiled module: STR_SEP.
  AP_EXTRACT_IMAGE: masked  4173 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940006.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940006.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.


 Processing chip b - ap2D-b-12940006.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.228
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
92 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-008.fits,71768,8,10
Processing /data-ql/data/56856/apRaw-12940007-008.fits
APEXTRACT...
Step III: Compressing with fpack
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.1458652 sec
<PtrHeapVar364> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940007-008.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  8379 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940006.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940006.fits

 Processing chip c - ap2D-c-12940006.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Recentering shift = 0.065
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
93 ql Message = UTR=/data-ql/data/56856/apRaw-12940007-009.fits,71768,9,10
Processing /data-ql/data/56856/apRaw-12940007-009.fits
Input file size = 104984640 bytes
Output file size = 48764160 bytes
Compression ratio = 2.15291
dt = 38.948516 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940005.fits<< (104.98 MB)
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.1906521 sec
<PtrHeapVar368> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940007-009.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
Inserting exposure header information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

  AP_EXTRACT_IMAGE: masked  6683 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940006.fits
Saving FLUX/ERR as LONG instead of FLOAT
apquickred_dbinsert completed
dt = 35.531571 sec.
dt = 319.70848 sec
% Program caused arithmetic error: Floating underflow
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940006.fits
11 qr Message = UTR=DONE,12940007,56856,71768
Number of running qrBridge processes:            4
Number of valid qrBridge objects:            4  res=   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 17:58:25 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940007  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940007
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940007.fits
AP2PROC finished
APEXTRACT...

Step 4 - Compressing files
--------------------------

Compressing the bundled files
% Compiled module: APZIP.
% Compiled module: LOADINPUT.
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940006.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
% Compiled module: MKTEMP.
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.4167159 sec
<PtrHeapVar372> STRUCT    = -> <Anonymous> Array[1]
95 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940007-010.fits
Inserting S/N information
Inserting exposure_pk information 71768
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

96 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-001.fits,71769,1,10
Step II: Subtracting average dCounts
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

97 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-002.fits,71769,2,10
Processing /data-ql/data/56856/apRaw-12940008-002.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.8885732 sec
<PtrHeapVar377> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940008-002.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step III: Compressing with fpack
98 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-003.fits,71769,3,10
Processing /data-ql/data/56856/apRaw-12940008-003.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.2150879 sec
<PtrHeapVar381> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940008-003.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
Card is too long, c
Step 2 - Collapsing the datacube
--------------------------------

d.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Processing /data/apogee/archive/56856/apR-a-12940007.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Step III: Compressing with fpack
99 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-004.fits,71769,4,10
Processing /data-ql/data/56856/apRaw-12940008-004.fits
Input file size = 104984640 bytes
Output file size = 48234240 bytes
Compression ratio = 2.17656
dt = 55.415106 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940005.fits
APEXTRACT...
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940007.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.3187540 sec
<PtrHeapVar385> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940008-004.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing /data/apogee/quickred/56856/ap2D-b-12940005.fits
dt = 11.046959 sec

Processing /data/apogee/archive/56856/apR-b-12940007.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Compressing /data/apogee/quickred/56856/ap2D-c-12940005.fits
100 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-005.fits,71769,5,10
Processing /data-ql/data/56856/apRaw-12940008-005.fits
Input file size = 104984640 bytes
Output file size = 50713920 bytes
Compression ratio = 2.07013
dt = 55.727903 sec

2/3

Writing output to: /data/apogee/quickred/56856/ap2D-b-12940007.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing >>/data/apogee/archive/56856/apR-b-12940006.fits<< (104.98 MB)
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
dt = 7.6610911 sec

Processing /data/apogee/archive/56856/apR-c-12940007.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940005.fits
APQL_FITSHEADER ...
dt = 3.0331941 sec
<PtrHeapVar389> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940008-005.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing /data/apogee/quickred/56856/ap1D-b-12940005.fits
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940007.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap1D-c-12940005.fits
101 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-006.fits,71769,6,10
Processing /data-ql/data/56856/apRaw-12940008-006.fits
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Deleting Bundled f
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940005.fits.
% FILE_DELET
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940005.fits.

Step 5 - Database prep and insert
--------------------------



Step 3 - Extracting the spectra
-------------------------------

Extracting file /data/apogee/quickred/56856/12940007
--------------------------------------------------
MJD5 = 56856
starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
 Processing chip a - ap2D-a-12940007.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
Inserting Quickred SPECTRUM
Recentering shift = 0.292
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step II: Subtracting average dCounts
APQL_FITSHEADER ...
dt = 11.926425 sec
<PtrHeapVar393> UINT      = Array[6144]
<PtrHeapVar394> UINT      = Array[6144]
<PtrHeapVar395> UINT      = Array[6144]
<PtrHeapVar396> UINT      = Array[6144]
<PtrHeapVar397> UINT      = Array[6144]
<PtrHeapVar398> UINT      = Array[6144]
<PtrHeapVar399> UINT      = Array[6144]
<PtrHeapVar400> UINT      = Array[6144]
<PtrHeapVar401> UINT      = Array[6144]
<PtrHeapVar402> BYTE      = Array[768, 100]
<PtrHeapVar403> BYTE      = Array[768, 100]
<PtrHeapVar404> BYTE      = Array[768, 100]
<PtrHeapVar405> STRUCT    = -> <Anonymous> Array[1]
102 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-007.fits,71769,7,10
Processing /data-ql/data/56856/apRaw-12940008-007.fits
Inserting basic information for  -> apRaw-12940008-006.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
Inserting quicklook60 information
APEXTRACT...
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  4474 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940007.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940007.fits
APQL_FITSHEADER ...
dt = 6.7841680 sec
<PtrHeapVar409> STRUCT    = -> <Anonymous> Array[1]
103 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-008.fits,71769,8,10
Processing /data-ql/data/56856/apRaw-12940008-008.fits
Inserting basic information for  -> apRaw-12940008-007.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information

 Processing chip b - ap2D-b-12940007.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.286
Using Gaussian PSF fitting Extraction
APEXTRACT...
 ROW NITER SIG(med) CHI^2
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 5.0330839 sec
<PtrHeapVar413> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940008-008.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
104 ql Message = UTR=/data-ql/data/56856/apRaw-12940008-009.fits,71769,9,10
Processing /data-ql/data/56856/apRaw-12940008-009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.0413949 sec
<PtrHeapVar417> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940008-009.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  9353 pixels
Step III: Compressing with fpack
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940007.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940007.fits

 Processing chip c - ap2D-c-12940007.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Recentering shift = -0.100
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
12 qr Message = UTR=DONE,12940008,56856,71769
Number of running qrBridge processes:            4
Number of valid qrBridge objects:            4  res=   1   1   1   1
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:00:14 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940008  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940008
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940008.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.5023191 sec
<PtrHeapVar421> STRUCT    = -> <Anonymous> Array[1]
106 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940008-010.fits
Inserting S/N information
Inserting exposure_pk information 71769
Inserting required fits keywords error information
Inserting exposure header information
  AP_EXTRACT_IMAGE: masked  8560 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940007.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940007.fits
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940007.fits<< (104.98 MB)
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Nreads = 10
Step I: Making dCounts temporary file
apquickred_dbinsert completed
dt = 41.496646 sec.
dt = 327.30157 sec
% Program caused arithmetic error: Floating underflow
Input file size = 104984640 bytes
Output file size = 48761280 bytes
Compression ratio = 2.15303
dt = 59.506974 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940006.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
107 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-001.fits,71770,1,10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

108 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-002.fits,71770,2,10
Processing /data-ql/data/56856/apRaw-12940009-002.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.9399898 sec
<PtrHeapVar426> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-002.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 31.170288 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940008.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940008.fits
Saving FLUX/ERR as LONG instead of FLOAT
109 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-003.fits,71770,3,10
Processing /data-ql/data/56856/apRaw-12940009-003.fits
Step II: Subtracting average dCounts
APEXTRACT...
APEXTRACT...
dt = 5.9738979 sec

Processing /data/apogee/archive/56856/apR-b-12940008.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Card is too 
ong, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 5.4477549 sec
<PtrHeapVar430> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-003.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
Step II: Subtracting average dCounts
110 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-004.fits,71770,4,10
Processing /data-ql/data/56856/apRaw-12940009-004.fits
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940008.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
dt = 9.9444101 sec

Processing /data/apogee/archive/56856/apR-c-12940008.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bCard is too long, comment will
be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 6.3670819 sec
<PtrHeapVar434> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-004.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940008.fits
Saving FLUX/ERR as LONG instead of FLOAT
Step III: Compressing with fpack
111 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-005.fits,71770,5,10
Processing /data-ql/data/56856/apRaw-12940009-005.fits
APEXTRACT...
APEXTRACT...
dt = 9.3603001 sec
APEXTRACT...


Step 3 - Extracting the spectra
-------------------------------

Extracting file /data/apogee/quickred/56856/12940008
--------------------------------------------------
MJD5 = 56856
APQL_FITSHEADER ...
dt = 2.4574070 sec
<PtrHeapVar438> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-005.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

 Processing chip a - ap2D-a-12940008.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
Recentering shift = 0.335
Using Gaussian PSF fitting Extraction
Step III: Compressing with fpack
 ROW NITER SIG(med) CHI^2
112 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-006.fits,71770,6,10
Processing /data-ql/data/56856/apRaw-12940009-006.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 2.0961080 sec
<PtrHeapVar442> UINT      = Array[6144]
<PtrHeapVar443> UINT      = Array[6144]
<PtrHeapVar444> UINT      = Array[6144]
<PtrHeapVar445> UINT      = Array[6144]
<PtrHeapVar446> UINT      = Array[6144]
<PtrHeapVar447> UINT      = Array[6144]
<PtrHeapVar448> UINT      = Array[6144]
<PtrHeapVar449> UINT      = Array[6144]
<PtrHeapVar450> UINT      = Array[6144]
<PtrHeapVar451> BYTE      = Array[768, 100]
<PtrHeapVar452> BYTE      = Array[768, 100]
<PtrHeapVar453> BYTE      = Array[768, 100]
<PtrHeapVar454> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-006.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
Inserting quicklook60 information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Input file size = 104984640 bytes
Output file size = 50673600 bytes
Compression ratio = 2.07178
dt = 64.830952 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940007.fits<< (104.98 MB)
Nreads = 10
  AP_EXTRACT_IMAGE: masked  5949 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940008.fits
Saving FLUX/ERR as LONG instead of FLOAT
Step I: Making dCounts temporary file
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940008.fits
113 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-007.fits,71770,7,10
Processing /data-ql/data/56856/apRaw-12940009-007.fits

 Processing chip b - ap2D-b-12940008.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Input file size = 104984640 bytes
Output file size = 48199680 bytes
Compression ratio = 2.17812
dt = 69.271529 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940006.fits
Recentering shift = 0.329
Using Gaussian PSF fitting Extraction
APEXTRACT...
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 3.8822920 sec
<PtrHeapVar458> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-007.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap2D-c-12940006.fits
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940006.fits
114 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-008.fits,71770,8,10
Processing /data-ql/data/56856/apRaw-12940009-008.fits
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  11522 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940008.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap1D-b-12940006.fits
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940008.fits
APEXTRACT...
Compressing /data/apogee/quickred/56856/ap1D-c-12940006.fits
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940006.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940006.fits.
APQL_FITSHEADER ...
dt = 7.4617209 sec
<PtrHeapVar462> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-008.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940006.fits.

Step 5 - Database prep and insert
--------------------------

% Processing chip c - ap2D-c-12940008
fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Step II: Subtracting average dCounts
115 ql Message = UTR=/data-ql/data/56856/apRaw-12940009-009.fits,71770,9,10
Processing /data-ql/data/56856/apRaw-12940009-009.fits
% Compiled module: ZSCALE.
Recentering shift = -0.390
Using Gaussian PSF fitting Extraction
% Compiled module: GOODPOLY.
% Compiled module: BADPAR.
% Compiled module: POLY_FIT.
% Compiled module: STDEV.
 ROW NITER SIG(med) CHI^2
APEXTRACT...
% Compiled module: APQUICKRED_DBINSERT.
starting apquickred_dbinsert ...
% Compiled module: GET_SQL_COL.
% Compiled module: GET_SQL_SETUP.
% Compiled module: IDL_SQL_DEFSYSV.
APEXTRACT...
Inserting Quickred data
% Compiled module: REPSTR.
% Compiled module: EXEC_SQL.
% Compiled module: SET_SQL_COLARRAY.
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.9049780 sec
<PtrHeapVar466> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940009-009.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
  AP_EXTRACT_IMAGE: masked  8835 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940008.fits
Saving FLUX/ERR as LONG instead of FLOAT
13 qr Message = UTR=DONE,12940009,56856,71770
Number of running qrBridge processes:            4
Number of valid qrBridge objects:            4  res=   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:02:03 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940009  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940009
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940009.fits
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940008.fits
APEXTRACT...
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940008.fits<< (104.98 MB)
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APQL_FITSHEADER ...
dt = 5.7984200 sec
<PtrHeapVar470> STRUCT    = -> <Anonymous> Array[1]
117 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940009-010.fits
Inserting S/N information
Inserting exposure_pk information 71770
Inserting required fits keywords error information
118 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-001.fits,71771,1,10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step III: Compressing with fpack
119 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-002.fits,71771,2,10
Processing /data-ql/data/56856/apRaw-12940010-002.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.4921761 sec
<PtrHeapVar475> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940010-002.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step II: Subtracting average dCounts
120 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-003.fits,71771,3,10
Processing /data-ql/data/56856/apRaw-12940010-003.fits
APEXTRACT...
Input file size = 104984640 bytes
Output file size = 48683520 bytes
Compression ratio = 2.15647
dt = 71.695243 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940007.fits<< (104.98 MB)
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.6682911 sec
<PtrHeapVar479> STRUCT    = -> <Anonymous> Array[1]
121 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Inserting basic information for  -> apRaw-12940010-003.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting exposure header information
apquickred_dbinsert completed
dt = 50.921397 sec.
dt = 364.87765 sec
122 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-004.fits,71771,4,10
Processing /data-ql/data/56856/apRaw-12940010-004.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 1.9479120 sec
<PtrHeapVar483> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940010-004.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

123 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-005.fits,71771,5,10
Processing /data-ql/data/56856/apRaw-12940010-005.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.4292209 sec
<PtrHeapVar487> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940010-005.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Step III: Compressing with fpack
dt = 56.616721 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940009.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
 truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step II: Subtracting average dCounts
124 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-006.fits,71771,6,10
Processing /data-ql/data/56856/apRaw-12940010-006.fits
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940009.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 2.7435570 sec
<PtrHeapVar491> UINT      = Array[6144]
<PtrHeapVar492> UINT      = Array[6144]
<PtrHeapVar493> UINT      = Array[6144]
<PtrHeapVar494> UINT      = Array[6144]
<PtrHeapVar495> UINT      = Array[6144]
<PtrHeapVar496> UINT      = Array[6144]
<PtrHeapVar497> UINT      = Array[6144]
<PtrHeapVar498> UINT      = Array[6144]
<PtrHeapVar499> UINT      = Array[6144]
<PtrHeapVar500> BYTE      = Array[768, 100]
<PtrHeapVar501> BYTE      = Array[768, 100]
<PtrHeapVar502> BYTE      = Array[768, 100]
<PtrHeapVar503> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940010-006.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Inserting quicklook60 information
dt = 8.5196140 sec

Processing /data/apogee/archive/56856/apR-b-12940009.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing output to: /data/apogee/quickred/56856/ap2D-b-12940009.fits
Saving FLUX/ERR as LONG instead of FLOAT
125 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-007.fits,71771,7,10
Processing /data-ql/data/56856/apRaw-12940010-007.fits
dt = 9.2669361 sec

Processing /data/apogee/archive/56856/apR-c-12940009.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
Step III: Compressing with fpack
APEXTRACT...
APQL_FITSHEADER ...
dt = 6.6435421 sec
<PtrHeapVar507> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940010-007.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
126 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-008.fits,71771,8,10
Processing /data-ql/data/56856/apRaw-12940010-008.fits
Input file size = 104984640 bytes
Output file size = 50708160 bytes
Compression ratio = 2.07037
dt = 82.856697 sec

2/3

APEXTRACT...
Compressing >>/data/apogee/archive/56856/apR-b-12940008.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940009.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
dt = 13.558176 sec
APQL_FITSHEADER ...
dt = 4.1725161 sec
<PtrHeapVar511> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940010-008.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Input file size = 104984640 bytes
Output file size = 48150720 bytes
Compression ratio = 2.18033
dt = 58.505324 sec

Compressing the 2D images with FPACK


Step 3 - Extracting the spectra
-------------------------------
Compressing /data/apogee/quickred/56856/ap2D-a-12940007.fits

Extracting file /data/apogee/quickred/56856/12940009
--------------------------------------------------
MJD5 = 56856
Compressing /data/apogee/quickred/56856/ap2D-b-12940007.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

 Processing chip a - ap2D-a-12940009.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
Recentering shift = 0.349
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Step II: Subtracting average dCounts
127 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-009.fits,71771,9,10
Processing /data-ql/data/56856/apRaw-12940010-009.fits
14 qr Message = UTR=DONE,12940010,56856,71771
Number of running qrBridge processes:            4
Number of valid qrBridge objects:            4  res=   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:03:51 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940010  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940010
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940010.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.5819681 sec
<PtrHeapVar515> STRUCT    = -> <Anonymous> Array[1]
128 ql Message = UTR=/data-ql/data/56856/apRaw-12940010-010.fits,71771,10,10
Processing /data-ql/data/56856/apRaw-12940010-010.fits
APEXTRACT...
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  7106 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940009.fits
Saving FLUX/ERR as LONG instead of FLOAT
APQL_FITSHEADER ...
dt = 2.3079731 sec
<PtrHeapVar519> STRUCT    = -> <Anonymous> Array[1]
129 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940010-010.fits
Inserting S/N information
Inserting exposure_pk information 71771
Inserting required fits keywords error information
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940007.fits
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940009.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940007.fits
Compressing /data/apogee/quickred/56856/ap1D-c-12940007.fits
130 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-001.fits,71772,1,10

 Processing chip b - ap2D-b-12940009.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.330
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940007.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940007.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940007.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

131 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-002.fits,71772,2,10
Processing /data-ql/data/56856/apRaw-12940011-002.fits
  AP_EXTRACT_IMAGE: masked  12175 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940009.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940009.fits
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 3.5716419 sec
<PtrHeapVar524> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940011-002.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information

 Processing chip c - ap2D-c-12940009.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
No signal was seen on any fibers for chip        2
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
132 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-003.fits,71772,3,10
Processing /data-ql/data/56856/apRaw-12940011-003.fits
Input file size = 104984640 bytes
Output file size = 48752640 bytes
Compression ratio = 2.15341
dt = 53.886470 sec

3/3

APEXTRACT...
Compressing >>/data/apogee/archive/56856/apR-c-12940008.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
mment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Inserting basic information HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  10635 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940009.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940009.fits
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940009.fits<< (104.98 MB)
dt = 39.481779 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940010.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Nreads = 10
Using FOWLER sampling. NFOWLER=5
Step I: Making dCounts temporary file
133 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-004.fits,71772,4,10
Processing /data-ql/data/56856/apRaw-12940011-004.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.3594270 sec
<PtrHeapVar532> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940011-004.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing output to: /data/apogee/quickred/56856/ap2D-a-12940010.fits
Saving FLUX/ERR as LONG instead of FLOAT
Inserting exposure header information
apquickred_dbinsert completed
dt = 38.548977 sec.
dt = 377.45881 sec
% Program caused arithmetic error: Floating underflow
134 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-005.fits,71772,5,10
Processing /data-ql/data/56856/apRaw-12940011-005.fits
dt = 12.334342 sec

Processing /data/apogee/archive/56856/apR-b-12940010.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.3314402 sec
<PtrHeapVar536> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940011-005.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step II: Subtracting average dCounts
Step II: Subtracting average dCounts
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940010.fits
Saving FLUX/ERR as LONG instead of FLOAT
dt = 15.176815 sec

Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Processing /data/apogee/archive/56856/apR-c-12940010.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
135 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-006.fits,71772,6,10
Processing /data-ql/data/56856/apRaw-12940011-006.fits
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940010.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
dt = 11.301240 sec


Step 3 - Extracting the spectra
-------------------------------
APEXTRACT...

Extracting file /data/apogee/quickred/56856/12940010
--------------------------------------------------
MJD5 = 56856
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 7.4614120 sec
<PtrHeapVar540> UINT      = Array[6144]
<PtrHeapVar541> UINT      = Array[6144]
<PtrHeapVar542> UINT      = Array[6144]
<PtrHeapVar543> UINT      = Array[6144]
<PtrHeapVar544> UINT      = Array[6144]
<PtrHeapVar545> UINT      = Array[6144]
<PtrHeapVar546> UINT      = Array[6144]
<PtrHeapVar547> UINT      = Array[6144]
<PtrHeapVar548> UINT      = Array[6144]
<PtrHeapVar549> BYTE      = Array[768, 100]
<PtrHeapVar550> BYTE      = Array[768, 100]
<PtrHeapVar551> BYTE      = Array[768, 100]
<PtrHeapVar552> STRUCT    = -> <Anonymous> Array[1]
136 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-007.fits,71772,7,10
Processing /data-ql/data/56856/apRaw-12940011-007.fits
Inserting basic information for  -> apRaw-12940011-006.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information
Inserting quicklook60 information
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.1299000 sec
<PtrHeapVar556> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940011-007.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information
Step III: Compressing with fpack
a/56856/apRaw-12940011-008.fits,71772,8,10
Processing /data-ql/data/56856/apRaw-12940011-008.fits
APEXTRACT...
 Processing chip a - ap2D-a-12940010.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
APEXTRACT...
Step III: Compressing with fpack
Recentering shift = 0.351
Using Gaussian PSF fitting Extraction
APEXTRACT...
 ROW NITER SIG(med) CHI^2
APQL_FITSHEADER ...
dt = 2.1521239 sec
<PtrHeapVar560> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940011-008.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

138 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-009.fits,71772,9,10
Processing /data-ql/data/56856/apRaw-12940011-009.fits
APEXTRACT...
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  7707 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940010.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940010.fits
APQL_FITSHEADER ...
dt = 4.2318330 sec
<PtrHeapVar564> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940011-009.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information

 Processing chip b - ap2D-b-12940010.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.310
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Input file size = 104984640 bytes
Output file size = 48168000 bytes
Compression ratio = 2.17955
dt = 67.782988 sec

Compressing the 2D images with FPACK
Input file size = 104984640 bytes
Output file size = 50716800 bytes
Compression ratio = 2.07002
dt = 60.980848 sec

2/3

Compressing /data/apogee/quickred/56856/ap2D-a-12940008.fits
Compressing >>/data/apogee/archive/56856/apR-b-12940009.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Compressing /data/apogee/quickred/56856/ap2D-b-12940008.fits
139 ql Message = UTR=/data-ql/data/56856/apRaw-12940011-010.fits,71772,10,10
Processing /data-ql/data/56856/apRaw-12940011-Number of running qrBridge processes:            4
Number of valid qrBridge objects:            4  res=   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:05:36 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940011  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940011
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940011.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.8264821 sec
<PtrHeapVar568> STRUCT    = -> <Anonymous> Array[1]
140 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940011-010.fits
Inserting S/N information
Inserting exposure_pk information 71772
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  12243 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940010.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap2D-c-12940008.fits
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940010.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940008.fits

 Processing chip c - ap2D-c-12940010.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
No signal was seen on any fibers for chip        2
% Compiled module: STRMULT.
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
Compressing /data/apogee/quickred/56856/ap1D-b-12940008.fits
 ROW NITER SIG(med) CHI^2
Compressing /data/apogee/quickred/56856/ap1D-c-12940008.fits
141 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-001.fits,71773,1,10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940008.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940008.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940008.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Inserting Quickred Smasked  10946 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940010.fits
Saving FLUX/ERR as LONG instead of FLOAT
Step II: Subtracting average dCounts
142 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-002.fits,71773,2,10
Processing /data-ql/data/56856/apRaw-12940012-002.fits
APEXTRACT...
APEXTRACT...
AP2PROC finished
APEXTRACT...

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940010.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
APQL_FITSHEADER ...
dt = 3.3431132 sec
<PtrHeapVar573> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940012-002.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

143 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-003.fits,71773,3,10
Processing /data-ql/data/56856/apRaw-12940012-003.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.6100972 sec
<PtrHeapVar577> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940012-003.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

144 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-004.fits,71773,4,10
Processing /data-ql/data/56856/apRaw-12940012-004.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.7089770 sec
<PtrHeapVar581> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940012-004.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
Step III: Compressing with fpack
dt = 56.712198 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940011.fits  Nreads=10
145 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-005.fits,71773,5,10
Processing /data-ql/data/56856/apRaw-12940012-005.fits
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APQL_FITSHEADER ...
dt = 3.5760381 sec
<PtrHeapVar585> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940012-005.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940011.fits
Saving FLUX/ERR as LONG instead of FLOAT
Step II: Subtracting average dCounts
146 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-006.fits,71773,6,10
Processing /data-ql/data/56856/apRaw-12940012-006.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 13.815035 sec

APEXTRACT...
Processing /data/apogee/archive/56856/apR-b-12940011.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 4.4899440 sec
<PtrHeapVar589> UINT      = Array[6144]
<PtrHeapVar590> UINT      = Array[6144]
<PtrHeapVar591> UINT      = Array[6144]
<PtrHeapVar592> UINT      = Array[6144]
<PtrHeapVar593> UINT      = Array[6144]
<PtrHeapVar594> UINT      = Array[6144]
<PtrHeapVar595> UINT      = Array[6144]
<PtrHeapVar596> UINT      = Array[6144]
<PtrHeapVar597> UINT      = Array[6144]
<PtrHeapVar598> BYTE      = Array[768, 100]
<PtrHeapVar599> BYTE      = Array[768, 100]
<PtrHeapVar600> BYTE      = Array[768, 100]
<PtrHeapVar601> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940012-006.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
Inserting quicklook60 information
Inserting exposure header information
apquickred_dbinsert completed
dt = 59.414098 sec.
dt = 399.79916 sec
% Program caused arithmetic error: Floating underflow
Input file size = 104984640 bytes
Output file size = 48767040 bytes
Compression ratio = 2.15278
dt = 88.561157 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940009.fits<< (104.98 MB)
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Nreads = 10
Step I: Making dCounts temporary file
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940011.fits
Saving FLUX/ERR as LONG instead of FLOAT
147 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-007.fits,71773,7,10
Processing /data-ql/data/56856/apRaw-12940012-007.fits
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
dt = 31.935487 sec

Processing /data/apogee/archive/56856/apR-c-12940011.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940011.fits
Saving FLUX/ERR as LONG instead of FLOAT
APQL_FITSHEADER ...
dt = 7.4758701 sec
<PtrHeapVar605> STRUCT    = -> <Anonymous> Array[1]
148 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-008.fits,71773,8,10
Processing /data-ql/data/56856/apRaw-12940012-008.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Inserting S/N information
Inserting exposure_pk information 71773
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting required fits keywords error information
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 7.1366649 sec
<PtrHeapVar609> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940012-008.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
dt = 12.431443 sec
149 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-009.fits,71773,9,10
Processing /data-ql/data/56856/apRaw-12940012-009.fits
A
Step 3 - Extracting the spectra
-------------------------------

Extracting file /data/apogee/quickred/56856/12940011
--------------------------------------------------
MJD5 = 56856
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
Step III: Compressing with fpack
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.6558561 sec
<PtrHeapVar613> STRUCT    = -> <Anonymous> Array[1]
150 ql Message = UTR=/data-ql/data/56856/apRaw-12940012-010.fits,71773,10,10
Processing /data-ql/data/56856/apRaw-12940012-010.fits
Inserting basic information for  -> apRaw-12940012-009.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
 Processing chip a - ap2D-a-12940011.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
16 qr Message = UTR=DONE,12940012,56856,71773
Number of running qrBridge processes:            4
Number of valid qrBridge objects:            4  res=   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:07:38 2014
Recentering 
hift = 0.357
Using Gaussian PSF fitting Extraction

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940012
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Writing bundled file to /data/apogee/archive/Card is too long, comment willAPQL_FITSHEADER ...
dt = 5.6301222 sec
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

<PtrHeapVar617> STRUCT    = -> <Anonymous> Array[1]
151 ql Message = UTR=DONE
152 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
153 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-001.fits,71774,1,10
Inserting basic information for  -> apRaw-12940012-010.fits
Inserting S/N information
Inserting exposure_pk information 71773
Inserting required fits keywords error information
 ROW NITER SIG(med) CHI^2
  AP_EXTRACT_IMAGE: masked  7216 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940011.fits
Saving FLUX/ERR as LONG instead of FLOAT
Step II: Subtracting average dCounts
Input file size = 104984640 bytes
Output file size = 50705280 bytes
Compression ratio = 2.07049
dt = 108.61130 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940010.fits<< (104.98 MB)
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940011.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Nreads = 10
Step I: Making dCounts temporary file

 Processing chip b - ap2D-b-12940011.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.324
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
154 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-002.fits,71774,2,10
Processing /data-ql/data/56856/apRaw-12940013-002.fits
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
  AP_EXTRACT_IMAGE: masked  12256 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940011.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.3280280 sec
<PtrHeapVar622> STRUCT    = -> <Anonymous> Array[1]
155 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-003.fits,71774,3,10
Processing /data-ql/data/56856/apRaw-12940013-003.fits
APEXTRACT...
ic information for  -> apRaw-12940013-002.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940011.fits
APEXTRACT...
APQL_FITSHEADER ...
dt = 5.6428280 sec
<PtrHeapVar626> STRUCT    = -> <Anonymous> Array[1]
156 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-004.fits,71774,4,10
Processing /data-ql/data/56856/apRaw-12940013-004.fits
Inserting basic information for  -> apRaw-12940013-003.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...

 Processing chip c - ap2D-c-12940011.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
No signal was seen on any fibers for chip        2
Recentering shift = 0.000
Using Gaussian PSF fitting Extraction
APEXTRACT...
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.3798349 sec
<PtrHeapVar630> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940013-004.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
Step III: Compressing with fpack
157 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-005.fits,71774,5,10
Processing /data-ql/data/56856/apRaw-12940013-005.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  11271 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940011.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APQL_FITSHEADER ...
dt = 5.5427999 sec
<PtrHeapVar634> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940013-005.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940011.fits
Step II: Subtracting average dCounts
158 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-006.fits,71774,6,10
Processing /data-ql/data/56856/apRaw-12940013-006.fits
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

APEXTRACT...
Compressing >>/data/apogee/archive/56856/apR-a-12940011.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 55.941500 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940012.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 5.3829319 sec
<PtrHeapVar638> UINT      = Array[6144]
<PtrHeapVar639> UINT      = Array[6144]
<PtrHeapVar640> UINT      = Array[6144]
<PtrHeapVar641> UINT      = Array[6144]
<PtrHeapVar642> UINT      = Array[6144]
<PtrHeapVar643> UINT      = Array[6144]
<PtrHeapVar644> UINT      = Array[6144]
<PtrHeapVar645> UINT      = Array[6144]
<PtrHeapVar646> UINT      = Array[6144]
<PtrHeapVar647> BYTE      = Array[768, 100]
<PtrHeapVar648> BYTE      = Array[768, 100]
<PtrHeapVar649> BYTE      = Array[768, 100]
<PtrHeapVar650> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940013-006.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
Inserting quicklook60 information
Input file size = 104984640 bytes
Output file size = 48153600 bytes
Compression ratio = 2.18020
dt = 105.53354 sec

Compressing the 2D images with FPACK
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940012.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap2D-a-12940009.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

dt = 15.582551 sec

159 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-007.fits,71774,7,10
Processing /data-ql/data/56856/apRaw-12940013-007.fits
Processing /data/apogee/archive/56856/apR-b-12940012.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.0634570 sec
<PtrHeapVar654> STRUCT    = -> <Anonymous> Array[1]
160 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-008.fits,71774,8,10
Processing /data-ql/data/56856/apRaw-12940013-008.fits
Inserting basic information for  -> apRaw-12940013-007.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap2D-c-12940009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.5928550 sec
<PtrHeapVar658> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940013-008.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
Step II: Subtracting average dCounts
Step III: Compressing with fpack
161 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-009.fits,71774,9,10
Processing /data-ql/data/56856/apRaw-12940013-009.fits
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940009.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.0062749 sec
<PtrHeapVar662> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940013-009.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap1D-b-12940009.fits
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940012.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing /data/apogee/quickred/56856/ap1D-c-12940009.fits
dt = 17.160028 sec

Processing /data/apogee/archive/56856/apR-c-12940012.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940009.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940009.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940009.fits.

Step 5 - Database prep and insert
--------------------------

Input file size = 104984640 bytes
Output file size = 48749760 bytes
Compression ratio = 2.15354
dt = 85.810352 sec

3/3

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing >>/data/apogee/archive/56856/apR-c-12940010.fits<< (104.98 MB)
Nreads = 10
Inserting Quickred SPECTRUM
Step I: Making dCounts temporary file
162 ql Message = UTR=/data-ql/data/56856/apRaw-12940013-010.fits,71774,10,10
Processing /data-ql/data/56856/apRaw-12940013-010.fits
17 qr Message = UTR=DONE,12940013,56856,71774
Number of running qrBridge processes:            4
Number of valid qrBridge objects:            4  res=   1   1   1   1
---------> Starting a new apquickred Bridge
APEXTRACT...
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940012.fits
Saving FLUX/ERR as LONG instead of FLOAT
% Error opening file. File: 
% Compiled module: APQUICKRED.
in APQUICKRED
% Compiled module: APGUNDEF.

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:09:27 2014
% Compiled module: APGETDIR.
% Compiled module: ADDSLASH.
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940013  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

% Compiled module: APQBUNDLE.
Nfiles = 10 for 12940013
% Compiled module: FITS_READ.
% Compiled module: FITS_OPEN.
% Compiled module: SXPAR.
% Compiled module: GETTOK.
% Compiled module: SXDELPAR.
% Compiled module: FITS_CLOSE.
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940013.fits
% Compiled module: SXADDPAR.
% Compiled module: FITS_ADD_CHECKSUM.
% Compiled module: CHECKSUM32.
% Compiled module: N_BYTES.
% Compiled module: IS_IEEE_BIG.
% Compiled module: FITS_ASCII_ENCODE.
% Compiled module: MWRFITS.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

% Compiled module: FXPAR.
% Compiled module: FXADDPAR.
% Compiled module: VALID_NUM.
APEXTRACT...
APEXTRACT...
% Compiled module: FITS_TEST_CHECKSUM.
APQL_FITSHEADER ...
dt = 5.4923480 sec
<PtrHeapVar666> STRUCT    = -> <Anonymous> Array[1]
163 ql Message = UTR=DONE
164 ql Message = UTR=/data-ql/data/56856/apRaw-12940014-001.fits,71775,1,10
Inserting basic information for  -> apRaw-12940013-010.fits
Inserting S/N information
Inserting exposure_pk information 71774
Inserting required fits keywords error information
dt = 23.057065 sec


Step 3 - Extracting the spectra
-------------------------------
Step III: Compressing with fpack
% Compiled module: HOST_TO_IEEE.
% Compiled module: REVERSE.

Extracting file /data/apogee/quickred/56856/12940012
--------------------------------------------------
MJD5 = 56856
% Compiled module: DETABIFY.
APEXTRACT...
APEXTRACT...
APEXTRACT...
 Processing chip a - ap2D-a-12940012.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
APQL_FITSHEADER ...
dt = 2.2138340 sec
<PtrHeapVar671> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940014-002.fits
Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information
Recentering shift = 0.345
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

166 ql Message = UTR=/data-ql/data/56856/apRaw-12940014-003.fits,71775,3,10
Processing /data-ql/data/56856/apRaw-12940014-003.fits
  AP_EXTRACT_IMAGE: masked  7003 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940012.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940012.fits
Inserting exposure header information
apquickred_dbinsert completed
dt = 35.906129 sec.
dt = 470.16104 sec
% Program caused arithmetic error: Floating underflow
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 9.8100698 sec
<PtrHeapVar675> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940014-003.fits
Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information

 Processing chip b - ap2D-b-12940012.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
167 ql Message = UTR=/data-ql/data/56856/apRaw-12940014-004.fits,71775,4,10
Processing /data-ql/data/56856/apRaw-12940014-004.fits
Input file size = 104984640 bytes
Output file size = 50659200 bytes
Compression ratio = 2.07237
dt = 86.278282 sec

2/3

Recentering shift = 0.315
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Compressing >>/data/apogee/archive/56856/apR-b-12940011.fits<< (104.98 MB)
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
Step II: Subtracting average dCounts
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.8240340 sec
<PtrHeapVar679> STRUCT    = -> <Anonymous> Array[1]
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information
168 ql Message = UTR=/data-ql/data/56856/apRaw-12940014-005.fits,71775,5,10
Processing /data-ql/data/56856/apRaw-12940014-005.fits
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  12490 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940012.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.8977170 sec
<PtrHeapVar683> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940014-005.fits
Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940012.fits
169 ql Message = UTR=/data-ql/data/56856/apRaw-12940014-006.fits,71775,6,10
Processing /data-ql/data/56856/apRaw-12940014-006.fits

 Processing chip c - ap2D-c-12940012.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Recentering shift = -0.524
Using Gaussian PSF fitting Extraction
APEXTRACT...
 ROW NITER SIG(med) CHI^2
will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 7.8995862 sec
<PtrHeapVar687> UINT      = Array[6144]
<PtrHeapVar688> UINT      = Array[6144]
<PtrHeapVar689> UINT      = Array[6144]
<PtrHeapVar690> UINT      = Array[6144]
<PtrHeapVar691> UINT      = Array[6144]
<PtrHeapVar692> UINT      = Array[6144]
<PtrHeapVar693> UINT      = Array[6144]
<PtrHeapVar694> UINT      = Array[6144]
<PtrHeapVar695> UINT      = Array[6144]
<PtrHeapVar696> BYTE      = Array[768, 100]
<PtrHeapVar697> BYTE      = Array[768, 100]
<PtrHeapVar698> BYTE      = Array[768, 100]
<PtrHeapVar699> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940014-006.fits
Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information
Inserting quicklook60 information
  AP_EXTRACT_IMAGE: masked  9371 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940012.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step II: Subtracting average dCounts
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940012.fits
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940012.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
170 ql Message = UTR=/data-ql/data/56856/apRaw-12940014-007.fits,71775,7,10
Processing /data-ql/data/56856/apRaw-12940014-007.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 2.1020782 sec
<PtrHeapVar703> STRUCT    = -> <Anonymous> Array[1]
171 ql Message = UTR=/data-ql/data/56856/apRaw-12940014-008.fits,71775,8,10
Processing /data-ql/data/56856/apRaw-12940014-008.fits
Inserting basic information for  -> apRaw-12940014-007.fits
Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information
Step III: Compressing with fpack
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 5.9591758 sec
<PtrHeapVar707> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940014-008.fits
dt = 82.946735 sec

Step 2 - Collapsing the datacube
--------------------------------

Inserting S/N information
Inserting exposure_pk information 71775
172 ql Message = UTR=/data-qlInserting required fits keywords error informatPro
essing /data-ql/data/56856/apRaw-12940014-009.fits
% Compiled module: HEADFITS.
% Compiled module: FXPOSIT.
% Compiled module: MRD_HREAD.
Processing /data/apogee/archive/56856/apR-a-12940013.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
% Compiled module: MAD.
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 4.1604171 sec
<PtrHeapVar711> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940014-009.fits
Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information
% Compiled module: MEAN.
12940014,56856,71775
Number of running qrBridge processes:            5
Number of valid qrBridge objects:            5  res=   1   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
% Compiled module: MOMENT.
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940014  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940014
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940014.fits
APEXTRACT...
% Compiled module: SXADDHIST.
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940013.fits
Saving FLUX/ERR as LONG instead of FLOAT
% Compiled module: FITS_WRITE.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

% Compiled module: MKHDR.
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.6759541 sec
<PtrHeapVar715> STRUCT    = -> <Anonymous> Array[1]
174 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940014-010.fits
Inserting S/N information
Inserting exposure_pk information 71775
Inserting required fits keywords error information
dt = 24.701040 sec
% Compiled module: PUSH.
175 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-001.fits,71776,1,10
Step III: Compressing with fpack
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.


Processing /data/apogee/archive/56856/apR-b-12940013.fits  Nreads=10
Input file size = 104984640 bytes
Output file size = 48130560 bytes
Compression ratio = 2.18125
dt = 120.29659 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940010.fits
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Step II: Subtracting average dCounts
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940013.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap2D-b-12940010.fits
176 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-002.fits,71776,2,10
Processing /data-ql/data/56856/apRaw-12940015-002.fits
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing /data/apogee/quickred/56856/ap2D-c-12940010.fits
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.7097230 sec
<PtrHeapVar720> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940015-002.fits
Inserting S/N information
Inserting exposure_pk information 71776
Inserting required fits keywords error information
dt = 11.028275 sec

Processing /data/apogee/archive/56856/apR-c-12940013.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940010.fits
177 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-003.fits,71776,3,10
Processing /data-ql/data/56856/apRaw-12940015-003.fits
Input file size = 104984640 bytes
Output file size = 48672000 bytes
Compression ratio = 2.15698
dt = 98.225919 sec

3/3

APEXTRACT...
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940013.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing >>/data/apogee/archive/56856/apR-c-12940011.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.3175390 sec
<PtrHeapVar724> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940015-003.fits
Inserting S/N information
Inserting exposure_pk information 71776
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap1D-c-12940010.fits
178 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-004.fits,71776,4,10
Processing /data-ql/data/56856/apRaw-12940015-004.fits
APEXTRACT...
dt = 17.485075 sec
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...


Step 3 - Extracting the spectra
-------------------------------
% Compiled module: AP2DPROC.
APQL_FITSHEADER ...
dt = 3.0837839 sec
% Compiled module: APFILEINFO.
<PtrHeapVar728> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information f% Compiled module: FIRST_EL.
s
% Compiled module: FXMOVE.
% Compiled module: MRD_SKIP.
% Compiled module: GETMJD5.
% Compiled module: JULDAY.
% Compiled module: DATE2JDInserting exposure_pk information 71776
Deleting Bundled files

Extracting file /data/apogee/quickred/56856/12940013
--------------------------------------------------
MJD5 = 56856
% Compiled module: APLOADFRAME.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940010.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940010.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940010.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
179 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-005.fits,71776,5,10
Processing /data-ql/data/56856/apRaw-12940015-005.fits
APEXTRACT...
Step III: Compressing with fpack
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.5278530 sec
<PtrHeapVar732> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940015-005.fits
Inserting S/N information
Inserting exposure_pk information 71776
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

 Processing chip a - ap2D-a-12940013.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
% Compiled module: MRDFITS.
% Compiled module: MATCH.
% Compiled module: MRD_STRUCT.
% Compiled module: POLY.
% Compiled module: GFUNC.
% Compiled module: C_CORRELATE.
% Compiled module: MAXLOC.
% Compiled module: MPFITPEAK.
% Compiled module: MPFIT.
% Compiled module: MPFITFUN.
% Compiled module: STRINGIZE.
Recentering shift = 0.342
Using Gaussian PSF fitting Extraction
% Compiled module: TRACESET2XY.
% Compiled module: TAG_EXIST.
% Compiled module: DJS_LAXISGEN.
% Compiled module: FPOLY.
% Compiled module: FLEGENDRE.
% Compiled module: AP_EXTRACT_IMAGE.
 ROW NITER SIG(med) CHI^2
% Compiled module: AP_EXTRACT_ROW.
% Compiled module: IDLUTILS_SO_EXT.
% Compiled module: FILEPATH.
% Compiled module: PIXELMASK_BITS.
% Compiled module: SDSS_FLAGVAL.
% Compiled module: YANNY_READ.
% Compiled module: FILEANDPATH.
% Compiled module: FDECOMP.
% Compiled module: NUMLINES.
% Compiled module: HOGG_UNQUOTED_REGEX.
% Compiled module: HOGG_STRSPLIT.
% Compiled module: YANNY_FREE.
% Compiled module: CALCFLUX.
180 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-006.fits,71776,6,10
Processing /data-ql/data/56856/apRaw-12940015-006.fits
APEXTRACT...
Step II: Subtracting average dCounts
dt = 62.904900 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940014.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 2.7107620 sec
<PtrHeapVar736> UINT      = Array[6144]
<PtrHeapVar737> UINT      = Array[6144]
<PtrHeapVar738> UINT      = Array[6144]
<PtrHeapVar739> UINT      = Array[6144]
<PtrHeapVar740> UINT      = Array[6144]
<PtrHeapVar741> UINT      = Array[6144]
<PtrHeapVar742> UINT      = Array[6144]
<PtrHeapVar743> UINT      = Array[6144]
<PtrHeapVar744> UINT      = Array[6144]
<PtrHeapVar745> BYTE      = Array[768, 100]
<PtrHeapVar746> BYTE      = Array[768, 100]
<PtrHeapVar747> BYTE      = Array[768, 100]
<PtrHeapVar748> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940015-006.fits
Inserting S/N information
Inserting exposure_pk information 71776
Inserting required fits keywords error information
Inserting quicklook60 information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Writing output to: /data/apogee/quickred/56856/ap2D-a-12940014.fits
Saving FLUX/ERR as LONG instead of FLOAT
% Compiled module: SPLOG.
% Compiled module: STR_SEP.
  AP_EXTRACT_IMAGE: masked  7093 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940013.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model t

Processing /data/apogee/archive/56856/apR-b-12940014.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Input file size = 104984640 bytes
Output file size = 50636160 bytes
Compression ratio = 2.07331
dt = 102.94541 sec

2/3

Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing >>/data/apogee/archive/56856/apR-b-12940012.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940014.fits
Saving FLUX/ERR as LONG instead of FLOAT

 Processing chip b - ap2D-b-12940013.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.328
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
dt = 10.723147 sec
181 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-007.fits,71776,7,10
Processing /data-ql/data/56856/apRaw-12940015-007.fits

Processing /data/apogee/archive/56856/apR-c-12940014.fits  Nreads=10
APEXTRACT...
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.3441658 sec
<PtrHeapVar752> STRUCT    = -> <Anonymous> Array[1]
182 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-008.fits,71776,8,10
Processing /data-ql/data/56856/apRaw-12940015-008.fits
Step III: CompressinInserting expInserti
g S/N informatio

Inserting exposure_pk information 71776
Inserting required fits keywords error information
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940013.fits
Saving FLUX/ERR as LONG instead of FLOAT
apquickred_dbinsert completed
dt = 44.258093 sec.
dt = 524.09769 sec
% Program caused arithmetic error: Floating underflow
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940013.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 8.1632462 sec
<PtrHeapVar756> STRUCT    = -> <Anonymous> Array[1]
183 ql Message = UTR=/data-ql/data/56856/apRaw-12940015-009.fits,71776,9,10
Processing /data-ql/data/56856/apRaw-12940015-009.fits
Inserting basic information for  -> apRaw-12940015-008.fits
Inserting S/N information
Inserting exposure_pk information 71776
Inserting required fits keywords error information
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.


 Processing chip c - ap2D-c-12940013.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.Using Gaussian PSF fitting Extraction
<PtrHeapVar760> STRUCT    = -> <Anonymous> Array[1]
184 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Inserting basic information for  -> apRaw-12940015-009.fits
Inserting S/N information
Inserting exposure_pk information 71776
Inserting required fits keywords error information
 ROW NITER SIG(med) CHI^2
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940014.fits
Saving FLUX/ERR as LONG instead of FLOAT
19 qr Message = UTR=DONE,12940015,56856,71776
Number of running qrBridge procProcessing /data-qlINumber of valid qrBridge objects
Output file size = 48090240 bytes
Compression ratio = 2.18308
dt = 74.333893 sec

Compressing t
===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:12:50 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940015  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940015
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940015.fits
dt = 22.008940 sec


Step 3 - Extracting the spectra
-------------------------------
  AP_EXTRACT_IMAGE: masked  9887 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940013.fits
Saving FLUX/ERR as LONG instead of FLOAT

Extracting file /data/apogee/quickred/56856/12940014
--------------------------------------------------
MJD5 = 56856
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940013.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
AP2PROC finished
APQL_FITSHEADER ...
dt = 6.0367620 sec
<PtrHeapVar764> STRUCT    = -> <Anonymous> Array[1]
186 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940015-010.fits
Inserting S/N information
Inserting exposure_pk information 71776

Step 4 - Compressing files
--------------------------

Compressing the bundled files
% Compiled module: APZIP.
% Compiled module: LOADINPUT.
3 Files input
1/3

Inserting required fits keywords error information
Compressing >>/data/apogee/archive/56856/apR-a-12940013.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
% Compiled module: MKTEMP.
Step II: Subtracting average dCounts
Compressing /data/apogee/quickred/56856/ap2D-b-12940011.fits
 Processing chip a - ap2D-a-12940014.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
Compressing /data/apogee/quickred/56856/ap2D-c-12940011.fits
its,71777,1,10
Recentering shift = 0.365
Using Gaussian PSF fitting Extraction
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

 ROW NITER SIG(med) CHI^2
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940011.fits
  AP_EXTRACT_IMAGE: masked  6311 pixels
188 ql Message = UTR=/data-ql/data/56856/apRaw-12940016-002.fits,71777,2,10
Processing /data-ql/data/56856/apRaw-12940016-002.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
G instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940014.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940011.fits
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 5.3638430 sec
<PtrHeapVar769> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940016-002.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
189 ql Message = UTR=/data-ql/data/56856/apRaw-12940016-003.fits,71777,3,10
Processing /data-ql/data/56856/apRaw-12940016-003.fits

 Processing chip b - ap2D-b-12940014.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.329
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing /data/apogee/quickred/56856/ap1D-c-12940011.fits
APEXTRACT...
Deleting Bundled files
Step III: Compressing with fpack
APEXTRACT...
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940011.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940011.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940011.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
  AP_EXTRACT_IMAGE: masked  11135 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940014.fits
Saving FLUX/ERR as LONG instead of FLOAT
Inserting Quickred SPECTRUM
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

APEXTRACT...
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 12.783369 sec
<PtrHeapVar773> STRUCT    = -> <Anonymous> Array[1]
190 ql Message = UTR=/data-ql/data/56856/apRaw-12940016-004.fits,71777,4,10
Processing /data-ql/data/56856/apRaw-12940016-004.fits
Inserting basic information for  -> apRaw-12940016-003.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940014.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.0228622 sec
<PtrHeapVar777> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940016-004.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
Step II: Subtracting average dCounts

 Processing chip c - ap2D-c-12940014.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
191 ql Message = UTR=/data-ql/data/56856/apRaw-12940016-005.fits,71777,5,10
Processing /data-ql/data/56856/apRaw-12940016-005.fits
Recentering shift = -0.033
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Input file size = 104984640 bytes
Output file size = 48628800 bytes
Compression ratio = 2.15890
dt = 84.834401 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940012.fits<< (104.98 MB)
APEXTRACT...
Nreads = 10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step I: Making dCounts temporary file
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 4.0720940 sec
<PtrHeapVar781> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940016-005.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
  AP_EXTRACT_IMAGE: masked  9964 pixels
/apRaw-12940016-006.fits,71777,6,10
Processing /data-ql/data/56856/apRaw-12940016-006.fits
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940014.fits
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940014.fits
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 4.3014350 sec
<PtrHeapVar785> UINT      = Array[6144]
<PtrHeapVar786> UINT      = Array[6144]
<PtrHeapVar787> UINT      = Array[6144]
<PtrHeapVar788> UINT      = Array[6144]
<PtrHeapVar789> UINT      = Array[6144]
<PtrHeapVar790> UINT      = Array[6144]
<PtrHeapVar791> UINT      = Array[6144]
<PtrHeapVar792> UINT      = Array[6144]
<PtrHeapVar793> UINT      = Array[6144]
<PtrHeapVar794> BYTE      = Array[768, 100]
<PtrHeapVar795> BYTE      = Array[768, 100]
<PtrHeapVar796> BYTE      = Array[768, 100]
<PtrHeapVar797> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940016-006.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
Inserting quicklook60 information
193 ql Message = UTR=/data-ql/data/56856/apRaw-12940016-007.fits,71777,7,10
Processing /data-ql/data/56856/apRaw-12940016-007.fits
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

dt = 74.409639 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940015.fits  Nreads=10
APEXTRACT...
Compressing >>/data/apogee/archive/56856/apR-a-12940014.fits<< (104.98 MB)
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.8013642 sec
<PtrHeapVar801> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940016-007.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting exposure header information
apquickred_dbinsert completed
dt = 41.207474 sec.
dt = 519.20968 sec
% Program caused arithmetic error: Floating underflow
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Step III: Compressing with fpack
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940015.fits
Saving FLUX/ERR as LONG instead of FLOAT
Step II: Subtracting average dCounts
194 ql Message = UTR=/data-ql/data/56856/apRaw-12940016-008.fits,71777,8,10
Processing /data-ql/data/56856/apRaw-12940016-008.fits
APEXTRACT...
dt = 23.713665 sec

Processing /data/apogee/archive/56856/apR-b-12940015.fits  Nreads=10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 7.1884639 sec
<PtrHeapVar805> STRUCT    = -> <Anonymous> Array[1]
195 ql Message = UTR=/data-ql/data/56856/apRaw-12940016-009.fits,71777,9,10
Processing /data-ql/data/56856/apRaw-12940016-009.fits
Inserting basic information for  -> apRaw-12940016-008.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.5826290 sec
<PtrHeapVar809> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940016-009.fits
Inserting S/N information
Inserting exposure_pk information 71777
Inserting required fits keywords error information
20 qr Message = UTR=DONE,12940016,56856,71777
Number of running qrBridge processes:            5
Number of valid qrBridge objects:            5  res=   1   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:14:37 2014
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940016  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

Nfiles = 10 for 12940016
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-129400
Saving FLUX/ERR as LONG instead of FLOAT
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.4931040 sec
<PtrHeapVar813> STRUCT    = -> <Anonymous> Array[1]
197 ql Message = UTR=DONE
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Inserting S/N information
Inserting exposure_pk information 71777
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Inserting required fits keywords error information
dt = 15.093645 sec
Step II: Subtracting average dCounts

Processing /data/apogee/archive/56856/apR-c-12940015.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
198 ql Message = UTR=/data-ql/data/56856/apRaw-12940017-001.fits,71778,1,10
Input file size = 104984640 bytes
Output file size = 50647680 bytes
Compression ratio = 2.07284
dt = 114.32102 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940013.fits<< (104.98 MB)
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Nreads = 10
Step I: Making dCounts temporary file
Step III: Compressing with fpack
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940015.fits
Saving FLUX/ERR as LONG instead of FLOAT
dt = 23.222048 sec


Step 3 - Extracting the spectra
-------------------------------
Input file size = 104984640 bytes
Output file size = 48064320 bytes
Compression ratio = 2.18425
dt = 82.376835 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940012.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.


Extracting file /data/apogee/quickred/56856/12940015
--------------------------------------------------
MJD5 = 56856
Step III: Compressing with fpack
 Processing chip a - ap2D-a-12940015.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
Recentering shift = 0.377
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

  AP_EXTRACT_IMAGE: masked  7097 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940015.fits
Saving FLUX/ERR as LONG instead of FLOAT
Compressing /data/apogee/quickred/56856/ap2D-b-12940012.fits
APEXTRACT...
APEXTRACT...
ong, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be Output file size = 50662080 bytes
Compression ratio = 2.07225
dt = 87.145582 sec

2/3

Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Compressing >>/data/apogee/archive/56856/apR-b-12940014.fits<< (104.98 MB)
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940015.fits
APEXTRACT...
Nreads = 10
Step I: Making dCounts temporary file
APQL_FITSHEADER ...
dt = 16.965845 sec
<PtrHeapVar818> STRUCT    = -> <Anonymous> Array[1]
200 ql Message = UTR=/data-ql/data/56856/apRaw-12940017-003.fits,71778,3,10
Processing /data-ql/data/56856/apRaw-12940017-003.fits
Inserting basic information for  -> apRaw-12940017-002.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information
Compressing /data/apogee/quickred/56856/ap2D-c-12940012.fits
APEXTRACT...

 Processing chip b - ap2D-b-12940015.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
APEXTRACT...
ong, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
Recentering shift = 0.356
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
APQL_FITSHEADER ...
dt = 9.0963600 sec
<PtrHeapVar822> STRUCT    = -> <Anonymous> Array[1]
201 ql Message = UTR=/data-ql/data/56856/apRaw-12940017-004.fits,71778,4,10
Processing /data-ql/data/56856/apRaw-12940017-004.fits
Inserting basic information for  -> apRaw-12940017-003.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information
APEXTRACT...
APEXTRACT...
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940012.fits
Step II: Subtracting average dCounts
APEXTRACT...
APQL_FITSHEADER ...
dt = 6.5007582 sec
<PtrHeapVar826> STRUCT    = -> <Anonymous> Array[1]
202 ql Message = UTR=/data-ql/data/56856/apRaw-12940017-005.fits,71778,5,10
Processing /data-ql/data/56856/apRaw-12940017-005.fits
APEXTRACT...
ong, comment will be truncated.
Card is too long, comment will be truncatInseCard is too long, comment will be t
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

  AP_EXTRACT_IMAGE: masked  11304 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940015.fits
Saving FLUX/ERR as LONG instead of FLOAT
dt = 74.786003 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940016.fits  Nreads=10
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940015.fits
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APEXTRACT...
APQL_FITSHEADER ...
dt = 6.2858770 sec
<PtrHeapVar830> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940017-005.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information

 Processing chip c - ap2D-c-12940015.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
203 ql Message = UTR=/data-ql/data/56856/apRaw-12940017-006.fits,71778,6,10
Processing /data-ql/data/56856/apRaw-12940017-006.fits
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Recentering shift = -0.156
Using Gaussian PSF fitting Extraction
Compressing /data/apogee/quickred/56856/ap1D-c-12940012.fits
APEXTRACT...
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 6.2092340 sec
<PtrHeapVar834> UINT      = Array[6144]
<PtrHeapVar835> UINT      = Array[6144]
<PtrHeapVar836> UINT      = Array[6144]
<PtrHeapVar837> UINT      = Array[6144]
<PtrHeapVar838> UINT      = Array[6144]
<PtrHeapVar839> UINT      = Array[6144]
<PtrHeapVar840> UINT      = Array[6144]
<PtrHeapVar841> UINT      = Array[6144]
<PtrHeapVar842> UINT      = Array[6144]
<PtrHeapVar843> BYTE      = Array[768, 100]
<PtrHeapVar844> BYTE      = Array[768, 100]
<PtrHeapVar845> BYTE      = Array[768, 100]
<PtrHeapVar846> STRUCT    = -> <Anonymous> Array[1]
204 ql Message = UTR=/data-ql/data/56856/apRaw-12940017-007.fits,71778,7,10
Processing /data-ql/data/56856/apRaw-12940017-007.fits
Inserting basic information for  -> apRaw-12940017-006.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information
Inserting quicklook60 information
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.0326638 sec
<PtrHeapVar850> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940017-007.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940012.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940012.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940012.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

  AP_EXTRACT_IMAGE: masked  10032 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940015.fits
Saving FLUX/ERR as LONG instead of FLOAT
Inserting Quickred SPECTRUM
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940016.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940015.fits
Step II: Subtracting average dCounts
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
AP2PROC finished

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940015.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 6.8850510 sec
<PtrHeapVar854> STRUCT    = -> <Anonymous> Array[1]
206 ql Message = UTR=/data-ql/data/56856/apRaw-12940017-009.fits,71778,9,10
Processing /data-ql/data/56856/apRaw-12940017-009.fits
Inserting basic information for  -> apRaw-12940017-008.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information
APEXTRACT...
APEXTRACT...
APEXTRACT...
dt = 33.542149 sec

Processing /data/apogee/archive/56856/apR-b-12940016.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
APQL_FITSHEADER ...
dt = 1.9811139 sec
<PtrHeapVar858> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940017-009.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information
21 qr Message = UTR=DONE,12940017,56856,71778
Number of running qrBridge processes:            5
Number of valid qrBridge objects:            5  res=   1   1   1   1   1

****************
 ERROR: reached maximum number of apquickred processes (       5)
        skipping apquickred for 12940017
****************
APEXTRACT...
APEXTRACT...
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 3.0103860 sec
<PtrHeapVar862> STRUCT    = -> <Anonymous> Array[1]
208 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940017-010.fits
Inserting S/N information
Inserting exposure_pk information 71778
Inserting required fits keywords error information
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940016.fits
Saving FLUX/ERR as LONG instead of FLOAT
209 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-001.fits,71779,1,10
dt = 12.950236 sec

Processing /data/apogee/archive/56856/apR-c-12940016.fits  Nreads=10
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Inserting exposure header information
210 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-002.fits,71779,2,10
Processing /data-ql/data/56856/apRaw-12940018-002.fits
apquickred_dbinsert completed
dt = 36.339324 sec.
dt = 548.28697 sec
% Program caused arithmetic error: Floating underflow
APEXTRACT...
APEXTRACT...
APEXTRACT...
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940016.fits
Saving FLUX/ERR as LONG instead of FLOAT
APQL_FITSHEADER ...
dt = 4.2434170 sec
<PtrHeapVar867> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940018-002.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

Input file size = 104984640 bytes
Output file size = 48651840 bytes
Compression ratio = 2.15788
dt = 121.66551 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940013.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
dt = 14.589285 sec


Step 3 - Extracting the spectra
-------------------------------

Extracting file /data/apogee/quickred/56856/12940016
--------------------------------------------------
MJD5 = 56856
Step II: Subtracting average dCounts
211 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-003.fits,71779,3,10
Processing /data-ql/data/56856/apRaw-12940018-003.fits
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.6750281 sec
<PtrHeapVar871> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940018-003.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

 Processing chip a - ap2D-a-12940016.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
Recentering shift = 0.404
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Input file size = 104984640 bytes
Output file size = 48674880 bytes
Compression ratio = 2.15685
dt = 99.980444 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940014.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

  AP_EXTRACT_IMAGE: masked  7807 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940016.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940016.fits
212 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-004.fits,71779,4,10
Processing /data-ql/data/56856/apRaw-12940018-004.fits
APEXTRACT...

 Processing chip b - ap2D-b-12940016.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.372
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.8369880 sec
<PtrHeapVar875> STRUCT    = -> <Anonymous> Array[1]
213 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-005.fits,71779,5,10
Processing /data-ql/data/56856/apRaw-12940018-005.fits
Inserting basic information for  -> apRaw-12940018-004.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
APEXTRACT...
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 2.3674841 sec
<PtrHeapVar879> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940018-005.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
Step III: Compressing with fpack
214 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-006.fits,71779,6,10
Processing /data-ql/data/56856/apRaw-12940018-006.fits
APEXTRACT...
Step II: Subtracting average dCounts
  AP_EXTRACT_IMAGE: masked  11984 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940016.fits
Saving FLUX/ERR as LONG instead of FLOAT
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APEXTRACT...
APQL_PLOTSPEC ...
APQL_PLOTARRAYS ...
APQL_FITSHEADER ...
dt = 12.311323 sec
<PtrHeapVar883> UINT      = Array[6144]
<PtrHeapVar884> UINT      = Array[6144]
<PtrHeapVar885> UINT      = Array[6144]
<PtrHeapVar886> UINT      = Array[6144]
<PtrHeapVar887> UINT      = Array[6144]
<PtrHeapVar888> UINT      = Array[6144]
<PtrHeapVar889> UINT      = Array[6144]
<PtrHeapVar890> UINT      = Array[6144]
<PtrHeapVar891> UINT      = Array[6144]
<PtrHeapVar892> BYTE      = Array[768, 100]
<PtrHeapVar893> BYTE      = Array[768, 100]
<PtrHeapVar894> BYTE      = Array[768, 100]
<PtrHeapVar895> STRUCT    = -> <Anonymous> Array[1]
215 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Inserting basic information for  -> apRaw-12940018-006.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
Inserting quicklook60 information
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940016.fits
Input file size = 104984640 bytes
Output file size = 50653440 bytes
Compression ratio = 2.07261
dt = 79.418829 sec

2/3

216 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-007.fits,71779,7,10
Processing /data-ql/data/56856/apRaw-12940018-007.fits
Compressing >>/data/apogee/archive/56856/apR-b-12940015.fits<< (104.98 MB)
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.


 Processing chip c - ap2D-c-12940016.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
APEXTRACT...
Nreads = 10
Step II: Subtracting average dCounts
Step I: Making dCounts temporary file
Recentering shift = -0.181
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
APEXTRACT...
APEXTRACT...
  AP_EXTRACT_IMAGE: masked  10216 pixels
Writing output to: /data/apogee/quickred/5685Card is too long, commeSaving FLUX/ERR as LONCard is too long, 
omment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APQL_FITSHEADER ...
dt = 14.446086 sec
<PtrHeapVar899> STRUCT    = -> <Anonymous> Array[1]
217 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-008.fits,71779,8,10
Processing /data-ql/data/56856/apRaw-12940018-008.fits
Inserting basic information for  -> apRaw-12940018-007.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
APEXTRACT...
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940016.fits
AP2PROC finished
APEXTRACT...

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing >>/data/apogee/archive/56856/apR-a-12940016.fits<< (104.98 MB)
APEXTRACT...
APQL_FITSHEADER ...
dt = 8.1765020 sec
<PtrHeapVar903> STRUCT    = -> <Anonymous> Array[1]
218 ql Message = UTR=/data-ql/data/56856/apRaw-12940018-009.fits,71779,9,10
Processing /data-ql/data/56856/apRaw-12940018-009.fits
Inserting basic information for  -> apRaw-12940018-008.fits
Step III: Compressing with fpack
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
Nreads = 10
APEXTRACT...
Step I: Making dCounts temporary file
APEXTRACT...
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Card is too long, comment will be truncated.
Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFX' card to meet the FITS standard.
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).  Fixed 'BOREOFFY' card to meet the FITS standard.
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFX' card to meet the FITS standard.
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFY' card to meet the FITS standard.
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).  Fixed 'CALOFFR' card to meet the FITS standard.
Note: PyFITS uses zero-based indexing.

Output verification result:
HDU 0:
    Card 84:
        Card 'BOREOFFX' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 85:
        Card 'BOREOFFY' is not FITS standard (invalid value string: NAN.0 / TCC Boresight offset, deg).
    Card 90:
        Card 'CALOFFX' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 91:
        Card 'CALOFFY' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
    Card 92:
        Card 'CALOFFR' is not FITS standard (invalid value string: NAN.0 / TCC CalibOff, deg).
Note: PyFITS uses zero-based indexing.

APEXTRACT...
APQL_FITSHEADER ...
dt = 2.5350261 sec
<PtrHeapVar907> STRUCT    = -> <Anonymous> Array[1]
Inserting basic information for  -> apRaw-12940018-009.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
22 qr Message = UTR=DONE,12940018,56856,71779
Number of running qrBridge processes:            5
Number of valid qrBridge objects:            5  res=   1   1   1   1   1
apqractor_lun=         100
APQUICKRED Completed normally
in APQUICKRED

===============================
Running APOGEE QUICK REDUCTION
===============================
Thu Jul 17 18:18:13 2014
Step III: Compressing with fpack
Using BPM = /data-ql/spectro/v0.6//cal/bpm/55577-00000037
Using PSF = /data-ql/spectro/v0.6//cal/psf/09710014

-----------------------------------------------------------
Processing Frame = 12940018  Nreads=10
-----------------------------------------------------------

Step 1 - Bundling
-----------------

APEXTRACT...
Nfiles = 10 for 12940018
Writing bundled file to /data/apogee/archive/56856/apR-[abc]-12940018.fits
APEXTRACT...
APEXTRACT...
APQL_FITSHEADER ...
dt = 3.4978540 sec
<PtrHeapVar911> STRUCT    = -> <Anonymous> Array[1]
220 ql Message = UTR=DONE
Inserting basic information for  -> apRaw-12940018-010.fits
Inserting S/N information
Inserting exposure_pk information 71779
Inserting required fits keywords error information
Step II: Subtracting average dCounts
Input file size = 104984640 bytes
Output file size = 48070080 bytes
Compression ratio = 2.18399
dt = 88.900627 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940013.fits
Compressing /data/apogee/quickred/56856/ap2D-b-12940013.fits
Input file size = 104984640 bytes
Output file size = 48078720 bytes
Compression ratio = 2.18360
dt = 77.316612 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940014.fits
Compressing /data/apogee/quickred/56856/ap2D-c-12940013.fits
Step II: Subtracting average dCounts
221 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap2D-b-12940014.fits
Compressing /data/apogee/quickred/56856/ap1D-a-12940013.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940013.fits
Compressing /data/apogee/quickred/56856/ap2D-c-12940014.fits
Compressing /data/apogee/quickred/56856/ap1D-c-12940013.fits
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/ar
hive/56856/apR-a-12940013.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940013.fits.
Compressing /data/apogee/quickred/56856/ap1D-a-12940014.fits
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940013.fits.

Step 5 - Database prep and insert
--------------------------

% Compiled module: APQUICKRED_DBPREP.
% Compiled module: ZSCALE.
% Compiled module: GOODPOLY.
% Compiled module: BADPAR.
% Compiled module: POLY_FIT.
% Compiled module: STDEV.
% Compiled module: APQUICKRED_DBINSERT.
starting apquickred_dbinsert ...
% Compiled module: GET_SQL_COL.
% Compiled module: GET_SQL_SETUP.
% Compiled module: IDL_SQL_DEFSYSV.
Compressing /data/apogee/quickred/56856/ap1D-b-12940014.fits
Compressing /data/apogee/quickred/56856/ap1D-c-12940014.fits
Inserting Quickred data
% Compiled module: REPSTR.
% Compiled module: EXEC_SQL.
Deleting Bundled files
% Compiled module: SET_SQL_COLARRAY.
Step III: Compressing with fpack
Step III: Compressing with fpack
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940014.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940014.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940014.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
Inserting Quickred SPECTRUM
dt = 54.243545 sec

Step 2 - Collapsing the datacube
--------------------------------

Processing /data/apogee/archive/56856/apR-a-12940018.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-a-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Writing output to: /data/apogee/quickred/56856/ap2D-a-12940018.fits
Saving FLUX/ERR as LONG instead of FLOAT
dt = 3.8294702 sec

Processing /data/apogee/archive/56856/apR-b-12940018.fits  Nreads=10
Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-b-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Writing output to: /data/apogee/quickred/56856/ap2D-b-12940018.fits
Saving FLUX/ERR as LONG instead of FLOAT
dt = 7.1454930 sec

Processing /data/apogee/archive/56856/apR-c-12940018.fits  Nreads=10
Input file size = 104984640 bytes
Output file size = 48689280 bytes
Compression ratio = 2.15622
dt = 99.765672 sec

3/3

Using BPM file = /data-ql/spectro/v0.6//cal/bpm/apBPM-c-55577-00000037.fits
Using FOWLER sampling. NFOWLER=5
Compressing >>/data/apogee/archive/56856/apR-c-12940015.fits<< (104.98 MB)
Input file size = 104984640 bytes
Output file size = 50659200 bytes
Compression ratio = 2.07237
dt = 78.978924 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940016.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Nreads = 10
Step I: Making dCounts temporary file
Writing output to: /data/apogee/quickred/56856/ap2D-c-12940018.fits
Saving FLUX/ERR as LONG instead of FLOAT
dt = 11.780976 sec


Step 3 - Extracting the spectra
-------------------------------

Extracting file /data/apogee/quickred/56856/12940018
--------------------------------------------------
MJD5 = 56856
 Processing chip a - ap2D-a-12940018.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-a-09710014.fits
Recentering shift = 0.444
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Inserting exposure header information
apquickred_dbinsert completed
dt = 40.926486 sec.
dt = 520.03619 sec
% Program caused arithmetic error: Floating underflow
Inserting exposure header information
  AP_EXTRACT_IMAGE: masked  7923 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-a-12940018.fits
Saving FLUX/ERR as LONG instead of FLOAT
apquickred_dbinsert completed
dt = 54.231273 sec.
dt = 620.82421 sec
Step II: Subtracting average dCounts
Step II: Subtracting average dCounts
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-a-12940018.fits

 Processing chip b - ap2D-b-12940018.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-b-09710014.fits
Recentering shift = 0.424
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
  AP_EXTRACT_IMAGE: masked  13101 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-b-12940018.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-b-12940018.fits

 Processing chip c - ap2D-c-12940018.fits
  PSF file = /data-ql/spectro/v0.6//cal/psf/apPSF-c-09710014.fits
Recentering shift = 0.281
Using Gaussian PSF fitting Extraction
 ROW NITER SIG(med) CHI^2
Step III: Compressing with fpack
Step III: Compressing with fpack
  AP_EXTRACT_IMAGE: masked  10921 pixels
Writing output to: /data/apogee/quickred/56856/ap1D-c-12940018.fits
Saving FLUX/ERR as LONG instead of FLOAT
Writing 2D model to: /data/apogee/quickred/56856/ap2Dmodel-c-12940018.fits
AP2PROC finished
Input file size = 104984640 bytes
Output file size = 48683520 bytes
Compression ratio = 2.15647
dt = 61.243761 sec

3/3

Input file size = 104984640 bytes
Output file size = 48078720 bytes
Compression ratio = 2.18360
dt = 61.452946 sec

Compressing the 2D images with FPACK

Step 4 - Compressing files
--------------------------

Compressing the bundled files
3 Files input
1/3

Compressing /data/apogee/quickred/56856/ap2D-a-12940015.fits
Compressing >>/data/apogee/archive/56856/apR-a-12940018.fits<< (104.98 MB)
Compressing >>/data/apogee/archive/56856/apR-c-12940016.fits<< (104.98 MB)
Nreads = 10
Nreads = 10
Step I: Making dCounts temporary file
Step I: Making dCounts temporary file
Compressing /data/apogee/quickred/56856/ap2D-b-12940015.fits
Compressing /data/apogee/quickred/56856/ap2D-c-12940015.fits
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940015.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940015.fits
Compressing /data/apogee/quickred/56856/ap1D-c-12940015.fits
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940015.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940015.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940015.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
Step II: Subtracting average dCounts
Step II: Subtracting average dCounts
Step III: Compressing with fpack
Step III: Compressing with fpack
Input file size = 104984640 bytes
Output file size = 48075840 bytes
Compression ratio = 2.18373
dt = 54.333564 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940016.fits
Input file size = 104984640 bytes
Output file size = 50690880 bytes
Compression ratio = 2.07108
dt = 54.310195 sec

2/3

Compressing >>/data/apogee/archive/56856/apR-b-12940018.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Inserting exposure header information
Compressing /data/apogee/quickred/56856/ap2D-b-12940016.fits
apquickred_dbinsert completed
dt = 39.872884 sec.
dt = 509.02808 sec
% Program caused arithmetic error: Floating underflow
Compressing /data/apogee/quickred/56856/ap2D-c-12940016.fits
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940016.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940016.fits
Compressing /data/apogee/quickred/56856/ap1D-c-12940016.fits
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940016.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940016.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940016.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
Step II: Subtracting average dCounts
Step III: Compressing with fpack
Input file size = 104984640 bytes
Output file size = 48732480 bytes
Compression ratio = 2.15431
dt = 52.345051 sec

3/3

Compressing >>/data/apogee/archive/56856/apR-c-12940018.fits<< (104.98 MB)
Nreads = 10
Step I: Making dCounts temporary file
Inserting exposure header information
apquickred_dbinsert completed
dt = 49.086522 sec.
dt = 464.15201 sec
% Program caused arithmetic error: Floating underflow
Step II: Subtracting average dCounts
222 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Step III: Compressing with fpack
Input file size = 104984640 bytes
Output file size = 48136320 bytes
Compression ratio = 2.18099
dt = 37.771862 sec

Compressing the 2D images with FPACK
Compressing /data/apogee/quickred/56856/ap2D-a-12940018.fits
Compressing /data/apogee/quickred/56856/ap2D-b-12940018.fits
Compressing /data/apogee/quickred/56856/ap2D-c-12940018.fits
Compressing the 1D spectral files with FPACK
Compressing /data/apogee/quickred/56856/ap1D-a-12940018.fits
Compressing /data/apogee/quickred/56856/ap1D-b-12940018.fits
Compressing /data/apogee/quickred/56856/ap1D-c-12940018.fits
Deleting Bundled files
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-a-12940018.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-b-12940018.fits.
% FILE_DELETE: Removed file: /data/apogee/archive/56856/apR-c-12940018.fits.

Step 5 - Database prep and insert
--------------------------

starting apquickred_dbinsert ...
Inserting Quickred data
Inserting Quickred IMBINZOOM
Inserting Quickred SPECTRUM
Inserting exposure header information
apquickred_dbinsert completed
dt = 36.444453 sec.
dt = 317.85144 sec
% Program caused arithmetic error: Floating underflow
223 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
224 ql Message = ditherPosition=12.994020,A
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320 ql Message = ditherPosition=12.994020,A
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325 ql Message = ditherPosition=12.994020,A
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375 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
new rollover = 86395.81 s from now, at time.struct_time(tm_year=2014, tm_mon=7, tm_mday=19, tm_hour=7, tm_min=12, tm_sec=0, tm_wday=5, tm_yday=200, tm_isdst=0)

376 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
377 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
378 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
379 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
380 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
381 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
382 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
383 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
384 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
385 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
386 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
387 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
388 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
389 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
390 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
391 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
392 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
393 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
394 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
395 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
396 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
397 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
398 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
399 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
400 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
401 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
402 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
403 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
404 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
405 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
406 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
407 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
408 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
409 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
410 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
411 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
412 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
413 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
414 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
415 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
416 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
417 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
418 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
419 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
420 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
421 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
422 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
423 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
424 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
425 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
426 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
427 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
428 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
429 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
430 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
431 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
432 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
433 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
434 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
435 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
436 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
437 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
438 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
439 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
440 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
441 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
442 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
443 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
444 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
445 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
446 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
447 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
448 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
449 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
450 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
451 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
452 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
453 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
454 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
455 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
456 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
457 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
458 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
459 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
460 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
461 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
462 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
463 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
464 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
465 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
466 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
467 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
468 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
469 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
470 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
471 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
472 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
473 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
474 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
475 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
476 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
477 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
478 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
479 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
480 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
481 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
482 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
483 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
484 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
485 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
486 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
487 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
488 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
489 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
490 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
491 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
492 ql Message = ditherPosition=12.994020,A
0 - namedDitherPos=A
Error reading apqlactor_lun -> testing the socket connection
493 ql Message = 
% PRINTF: Error encountered writing to file. Unit: 100
          File: localhost.10038
  Broken pipe
% PRINTF: Error encountered writing to file. Unit: 100
          File: localhost.10038
  Broken pipe
Error reading apqlactor_lun -> testing the socket connection
% PRINTF: Error encountered writing to file. Unit: 100
          File: localhost.10038
  Broken pipe
socket is close -> EXITING apql_wrapper

% Error encountered writing to file. Unit: 100
  File: localhost.10038
  Broken pipe
apqr_wrapper -> Connection from  127.0.0.1 54540
Connection from  127.0.0.1 35559