2026-06-03 18:39:07 | INFO     | ======================================================================
2026-06-03 18:39:07 | INFO     | E3SM AR / TC / ETC Unified Workflow
2026-06-03 18:39:07 | INFO     | ======================================================================
2026-06-03 18:39:07 | INFO     |   run_dir    : era5
2026-06-03 18:39:07 | INFO     |   work_dir   : era5
2026-06-03 18:39:07 | INFO     |   result_dir : ec_results_era5_ne120
2026-06-03 18:39:07 | INFO     |   case_id    : data_tc
2026-06-03 18:39:07 | INFO     |   years      : 2010 – 2014
2026-06-03 18:39:07 | INFO     |   resolution : ne120  pg2=True
2026-06-03 18:39:07 | INFO     |   map_file   : /global/cfs/projectdirs/m4359/zhan524/mapping_files/map_ne120pg2_to_cmip6_180x360_traave.20240401.nc
2026-06-03 18:39:07 | INFO     |   steps      : [3, 4, 5, 6, 7]
2026-06-03 18:39:07 | INFO     | ======================================================================
2026-06-03 18:39:07 | INFO     |   Input file list: inputfile_data_tc_2010_2014.txt (60 entries)
2026-06-03 18:39:07 | INFO     |   Mesh ready: connect_CSne120_v2.dat (type=FV)
2026-06-03 18:39:07 | INFO     |   Grid type: FV
2026-06-03 18:39:07 | INFO     | ======================================================================
2026-06-03 18:39:07 | INFO     | STEP 3 – Tropical cyclone detection and tracking
2026-06-03 18:39:07 | INFO     | ======================================================================
2026-06-03 18:39:07 | INFO     |   Stitching TC tracks (range=6°, mintime=6, maxgap=1, wind≥17.5 m/s, lat ±40°)...
2026-06-03 18:39:07 | INFO     |   Calculating TC radial wind profiles (bin=0.125°, 159 bins)...
2026-06-03 18:49:14 | INFO     |   Radial profiles written to cyclones_radprof_data_tc_2010_2014.dat
2026-06-03 18:49:14 | INFO     |   Creating TC mask files (binary: 1 inside circulation, 0 outside)...
2026-06-03 18:49:35 | INFO     |   TC masks written (list: tc_mask_files_out.txt)
2026-06-03 18:49:35 | INFO     | Step 3 complete.
2026-06-03 18:49:35 | INFO     | ======================================================================
2026-06-03 18:49:35 | INFO     | STEP 4 – Extratropical cyclone detection and tracking
2026-06-03 18:49:35 | INFO     | ======================================================================
2026-06-03 18:49:35 | INFO     |   Detecting ETC candidate nodes (SLP minima, PSL drop ≥200 Pa/6°, warm-core excluded)...
2026-06-03 18:55:31 | INFO     |   ETC candidates written to etc_candidates_data_tc_2010_2014.txt
2026-06-03 18:55:31 | INFO     |   Stitching ETC tracks (range=6°, mintime=60h, maxgap=18h, min_endpoint_dist=12°)...
2026-06-03 18:55:33 | INFO     |   ETC tracks written to etc_tracks_data_tc_2010_2014.dat
2026-06-03 18:55:33 | INFO     |   Creating ETC mask files (binary: 1 within 6° of centre, 0 outside)...
2026-06-03 18:56:39 | INFO     |   ETC masks written (list: etc_mask_files_out.txt)
2026-06-03 18:56:39 | INFO     | Step 4 complete.
2026-06-03 18:56:39 | INFO     | ======================================================================
2026-06-03 18:56:39 | INFO     | STEP 5 – Atmospheric river detection and TC filtering
2026-06-03 18:56:39 | INFO     | ======================================================================
2026-06-03 18:56:39 | INFO     |   Detecting ARs: Laplacian(IVT) ≤ -20,000, minlat=15°, area ≥ 4×10⁵ km²...
2026-06-03 19:04:48 | INFO     |   Unfiltered AR masks written (list: ar_nofilt_files_out.txt)
2026-06-03 19:04:48 | INFO     |   Filtering ARs: removing detections within 8° of TC centres...
2026-06-03 19:05:07 | INFO     |   TC-filtered AR masks written (list: ar_filt_files_out.txt)
2026-06-03 19:05:07 | INFO     | Step 5 complete.
2026-06-03 19:05:07 | INFO     | ======================================================================
2026-06-03 19:05:07 | INFO     | STEP 6 – Apply AR mask to TVQ and PRECT
2026-06-03 19:05:07 | INFO     | ======================================================================
2026-06-03 19:05:07 | INFO     |   Creating TVQ_AR, TVQ_NONAR, PRECT_AR via VariableProcessor...
2026-06-03 19:07:34 | INFO     |   AR-masked variables written (list: TVQ_PRECT_AR_mask_files_out.txt)
2026-06-03 19:07:34 | INFO     | Step 6 complete.
2026-06-03 19:07:34 | INFO     | ======================================================================
2026-06-03 19:07:34 | INFO     | STEP 7 – Regrid and process with ncclimo
2026-06-03 19:07:34 | INFO     | ======================================================================
2026-06-03 19:07:34 | INFO     |   Processing AR masks ...
2026-06-03 19:08:41 | INFO     |   Done: AR masks
2026-06-03 19:08:41 | INFO     |   Processing TC masks ...
2026-06-03 19:09:58 | INFO     |   Done: TC masks
2026-06-03 19:09:58 | INFO     |   Processing ETC masks ...
2026-06-03 19:11:19 | INFO     |   Done: ETC masks
2026-06-03 19:11:19 | INFO     |   Processing AR-masked TVQ/PRECT variables ...
2026-06-03 19:13:22 | ERROR    | /global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncremap: line 3559: 1660142 Killed                  ncks -O -t 1 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --gaa remap_script=ncremap --gaa remap_hostname=login34 --gaa remap_version=5.3.9 --rgr lat_nm_out=lat --rgr lon_nm_out=lon --map_fl="/global/cfs/projectdirs/m4359/zhan524/mapping_files/map_ne120pg2_to_cmip6_180x360_traave.20240401.nc" "ec_results_era5_ne120/native/PRECT_AR_201001_201412.nc" "ec_results_era5_ne120/rgr/PRECT_AR_201001_201412.nc"
/global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncremap: line 3559: 1660144 Killed                  ncks -O -t 1 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --gaa remap_script=ncremap --gaa remap_hostname=login34 --gaa remap_version=5.3.9 --rgr lat_nm_out=lat --rgr lon_nm_out=lon --map_fl="/global/cfs/projectdirs/m4359/zhan524/mapping_files/map_ne120pg2_to_cmip6_180x360_traave.20240401.nc" "ec_results_era5_ne120/native/TVQ_NONAR_201001_201412.nc" "ec_results_era5_ne120/rgr/TVQ_NONAR_201001_201412.nc"
nco_err_exit(): ERROR Short NCO-generated message (usually name of function that triggered error): nco_put_vara()
nco_err_exit(): ERROR Error code is -60. Translation into English with nc_strerror(-60) is "NetCDF: Numeric conversion not representable"
/global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncclimo: line 3477: kill: (1660011) - No such process
/global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncclimo: line 3477: kill: (1660012) - No such process
2026-06-03 19:13:22 | ERROR    |   ncclimo failed for AR-masked TVQ/PRECT variables: Command failed (exit 1):
  cd ec_results_era5_ne120 && source /global/common/software/e3sm/anaconda_envs/load_latest_e3sm_unified_pm-cpu.sh && ls TVQ_PRECT_AR_mask/data_tc.*.nc | ncclimo -P eam --clm_md=hfc --caseid=data_tc.eam.h2 --yr_srt=2010 --yr_end=2014 --drc_out=ec_results_era5_ne120/native -O ec_results_era5_ne120/rgr --map=/global/cfs/projectdirs/m4359/zhan524/mapping_files/map_ne120pg2_to_cmip6_180x360_traave.20240401.nc --tpd=4 --split -v TVQ_AR,TVQ_NONAR,PRECT_AR
  stderr: /global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncremap: line 3559: 1660142 Killed                  ncks -O -t 1 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --gaa remap_script=ncremap --gaa remap_hostname=login34 --gaa remap_version=5.3.9 --rgr lat_nm_out=lat --rgr lon_nm_out=lon --map_fl="/global/cfs/projectdirs/m4359/zhan524/mapping_files/map_ne120pg2_to_cmip6_180x360_traave.20240401.nc" "ec_results_era5_ne120/native/PRECT_AR_201001_201412.nc" "ec_results_era5_ne120/rgr/PRECT_AR_201001_201412.nc"
/global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncremap: line 3559: 1660144 Killed                  ncks -O -t 1 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --no_tmp_fl --bfr_sz=33554432 --hdr_pad=10000 --gaa remap_script=ncremap --gaa remap_hostname=login34 --gaa remap_version=5.3.9 --rgr lat_nm_out=lat --rgr lon_nm_out=lon --map_fl="/global/cfs/projectdirs/m4359/zhan524/mapping_files/map_ne120pg2_to_cmip6_180x360_traave.20240401.nc" "ec_results_era5_ne120/native/TVQ_NONAR_201001_201412.nc" "ec_results_era5_ne120/rgr/TVQ_NONAR_201001_201412.nc"
nco_err_exit(): ERROR Short NCO-generated message (usually name of function that triggered error): nco_put_vara()
nco_err_exit(): ERROR Error code is -60. Translation into English with nc_strerror(-60) is "NetCDF: Numeric conversion not representable"
/global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncclimo: line 3477: kill: (1660011) - No such process
/global/common/software/e3sm/anaconda_envs/e3smu_1_13_0/pm-cpu/pixi_login/.pixi/envs/default/bin/ncclimo: line 3477: kill: (1660012) - No such process
2026-06-03 19:13:22 | INFO     | Step 7 complete.
2026-06-03 19:13:22 | INFO     |   Native-grid files : ec_results_era5_ne120/native
2026-06-03 19:13:22 | INFO     |   Regridded files   : ec_results_era5_ne120/rgr
2026-06-03 19:13:22 | INFO     | ======================================================================
2026-06-03 19:13:22 | INFO     | All requested steps finished in 2055.4 s.
2026-06-03 19:13:22 | INFO     | ======================================================================
2026-06-03 19:13:22 | INFO     | Output summary:
2026-06-03 19:13:22 | INFO     |   Unfiltered AR masks   : ec_results_era5_ne120/AR_mask_nofilt/
2026-06-03 19:13:22 | INFO     |   TC-filtered AR masks  : ec_results_era5_ne120/AR_mask/
2026-06-03 19:13:22 | INFO     |   AR-masked TVQ/PRECT   : ec_results_era5_ne120/TVQ_PRECT_AR_mask/
2026-06-03 19:13:22 | INFO     |   TC tracks             : ec_results_era5_ne120/cyclones_stitch_*.dat
2026-06-03 19:13:22 | INFO     |   TC radial profiles    : ec_results_era5_ne120/cyclones_radprof_*.dat
2026-06-03 19:13:22 | INFO     |   TC masks              : ec_results_era5_ne120/TC_mask/
2026-06-03 19:13:22 | INFO     |   ETC tracks            : ec_results_era5_ne120/etc_tracks_*.dat
2026-06-03 19:13:22 | INFO     |   ETC masks             : ec_results_era5_ne120/ETC_mask/
2026-06-03 19:13:22 | INFO     |   Native grid output    : ec_results_era5_ne120/native/
2026-06-03 19:13:22 | INFO     |   Regridded output      : ec_results_era5_ne120/rgr/
2026-06-03 19:13:22 | INFO     | ======================================================================
