members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 59271 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4764 23728787 0 273 2157 80426 superkingdom 0 Euryarchaeota 221 28890 1 10 phylum 75248 12 1 10083 class 0 183968 41 Thermococci 0 40 2258 Thermococcales 22 1 10071 order 1 36 family 10049 0 Thermococcaceae 39 2259 0 83867 2 Palaeococcus 1 1 120 genus Palaeococcus pacificus 1 971279 0 species 119 genus 1321 2260 7 0 species 176 Pyrococcus kukulkanii 1609559 1 0 species 191 0 Pyrococcus horikoshii 53953 1 29292 1 Pyrococcus abyssi 0 145 species 0 1 2261 Pyrococcus furiosus 207 species 2629106 2 0 no rank 415 Pyrococcus sp. ST04 1183377 1 0 species 146 species 269 0 Pyrococcus sp. NA2 342949 1 species 187 Pyrococcus yayanosii 1008460 1 0 1 62 genus 8572 0 Thermococcus 2263 29 175 species 0 2265 1 Thermococcus litoralis 119 species 342948 1 Thermococcus onnurineus 0 279 species 1 582419 Thermococcus paralvinellae 0 0 Thermococcus cleftensis 1 163003 species 561 187878 1 Thermococcus gammatolerans 0 253 species species 149 0 Thermococcus gorgonarius 71997 1 species 100 Thermococcus chitonophagus 1 54262 0 0 Thermococcus guaymasensis 110164 1 species 320 Thermococcus radiotolerans 1 187880 0 species 363 129 species 0 1712654 1 Thermococcus piezophilus no rank 2378 6 2627626 0 species 316 0 Thermococcus sp. 4557 1 1042877 472 species 1 2008440 Thermococcus sp. 5-4 0 691 species 0 246969 1 Thermococcus sp. AM4 Thermococcus sp. EXT12c 1 2016361 0 species 440 386 species 1 122420 Thermococcus sp. P6 0 Thermococcus sp. 2319x1 1674923 1 0 species 73 644 species 1 195522 Thermococcus nautili 0 Thermococcus eurythermalis 1 1505907 0 species 288 227 species 0 311400 1 Thermococcus kodakarensis 96 species 1 172049 Thermococcus sibiricus 0 species 519 0 Thermococcus peptonophilus 1 53952 species 384 0 Thermococcus thioreducens 1 277988 0 Thermococcus celer 1 2264 species 375 343 species 0 54077 1 Thermococcus barossii 72803 1 Thermococcus siculi 0 313 species species 152 Thermococcus pacificus 1 71998 0 210 species 0 1 49899 Thermococcus profundus Thermococcus barophilus 1 55802 0 species 133 2288 class 4 1 183980 10 Archaeoglobi 0 9 2231 0 order 2284 family 2284 9 2232 0 0 2 190818 680 genus Geoglobus ahangari 113653 1 0 species 240 species 440 0 Geoglobus acetivorans 565033 1 0 Ferroglobus 2 54260 1 1 genus 158 species 157 Ferroglobus placidus 1 54261 0 1 1 genus 1446 0 Archaeoglobus 5 2233 Archaeoglobus profundus 84156 1 0 species 240 Archaeoglobus fulgidus 1 2234 0 species 593 218 species 0 1 58290 Archaeoglobus veneficus species 394 0 Archaeoglobus sulfaticallidus 1 1316941 clade 8173 0 38 2283794 3114 class 0 183939 14 14 2182 Methanococcales 0 3114 order 2 1 family 1275 196117 8 0 genus 1072 1 1 Methanocaldococcus 7 196118 0 Methanocaldococcus vulcanius 73913 1 0 species 130 Methanocaldococcus bathoardescens 1 1301915 0 species 244 species 200 0 Methanocaldococcus fervens 83171 1 Methanocaldococcus infernus 1 67760 0 species 110 no rank 253 2641196 1 0 species 253 0 Methanocaldococcus sp. FS406-22 644281 1 species 134 0 Methanocaldococcus jannaschii 2190 1 196119 1 0 genus 203 0 Methanotorris igneus 2189 1 species 203 1837 family 0 2183 5 1622 genus 0 2184 4 191 species 0 2188 1 Methanococcus voltae 0 Methanococcus vannielii 1 2187 species 295 0 1 42879 Methanococcus aeolicus 140 species 996 species 0 1 39152 Methanococcus maripaludis 1 155862 0 genus 215 215 species 155863 1 Methanothermococcus okinawensis 0 Methanobacteria 24 183925 0 class 5059 1 1 order 5058 23 2158 0 2178 1 0 285 family 0 1 2179 285 genus 0 1 2180 Methanothermus fervidus 285 species 1 1 family 4773 0 Methanobacteriaceae 2159 22 0 2316 1 genus 409 0 1 2317 Methanosphaera stadtmanae 409 species Methanobacterium 8 2160 0 genus 1717 1 3 species 126 Methanobacterium congolense 1 118062 0 188 species 0 868131 1 Methanobacterium paludis 0 Methanobacterium formicicum 1 2162 species 285 292 species 0 1 877455 Methanobacterium lacus 0 2627676 2 702 no rank 0 1 1911685 Methanobacterium sp. MZ-A1 108 species Methanobacterium sp. MB1 1379702 1 0 species 594 species 121 0 Methanobacterium subterraneum 1 59277 1 1 genus 624 0 Methanothermobacter 145260 5 1 145263 Methanothermobacter marburgensis 0 276 species 1 145261 Methanothermobacter wolfeii 0 120 species 0 1 2631116 149 no rank 866790 1 Methanothermobacter sp. CaT2 0 149 species 0 Methanothermobacter thermautotrophicus 1 145262 species 78 Methanobrevibacter 2172 7 0 genus 2022 1 2 1 294671 Methanobrevibacter olleyae 0 240 species 632 no rank 0 2638681 2 0 1609968 1 Methanobrevibacter sp. YE315 321 species 311 species 0 224719 1 Methanobrevibacter sp. AbM4 Methanobrevibacter millerae 230361 1 0 species 421 1 83816 Methanobrevibacter ruminantium 0 291 species species 436 Methanobrevibacter smithii 2173 1 0 clade 5484 0 18 2283796 class 5273 1 16 Thermoplasmata 16 183967 0 1598 no rank 0 1 1234666 1598 species 1 1495144 methanogenic archaeon ISO4-H5 0 0 Methanomassiliicoccales 1235850 5 1 1 order 1407 612 family 2 2517203 0 2 1291539 Candidatus Methanomethylophilus 0 612 genus 28 1 Candidatus Methanomethylophilus alvus 1 1291540 0 species 584 0 1577788 2 family 794 1 1080709 0 526 genus species 526 Candidatus Methanomassiliicoccus intestinalis 1 1406512 0 1607807 1 0 genus 268 268 species 1 1577791 Candidatus Methanoplasma termitum 0 0 9 2301 Thermoplasmatales 4 1 2252 order 46659 3 Thermoplasmataceae 0 720 family 2 1 0 2302 2 genus 718 Thermoplasma acidophilum 2303 1 0 species 592 species 126 0 Thermoplasma volcanium 50339 1 1919231 1 0 no rank 800 0 1 1054217 Thermoplasmatales archaeon BRNA1 800 species family 137 1747776 1 0 137 genus 0 1 1747777 0 1 1673428 Cuniculiplasma divulgatum 137 species 2 90142 0 273 family 74968 2 0 273 genus 103 species 1 74969 Ferroplasma acidiphilum 0 0 Ferroplasma acidarmanus 1 97393 species 170 family 318 46630 1 0 318 genus 0 46631 1 0 1 82076 Picrophilus torridus 318 species 0 2 1803510 clade 211 genus 211 0 379546 2 species 142 Aciduliprofundum boonei 1 379547 0 no rank 69 0 2633939 1 69 species 0 673860 1 Aciduliprofundum sp. MAR08-339 clade 49210 0 113 2290931 0 62 183963 Halobacteria 198 1 28592 class 0 26 2235 Halobacteriales 193 1 12612 order 0 2236 9 Halobacteriaceae 23 1 3701 family 128 genus 0 1656823 1 Halanaeroarchaeum sulfurireducens 1 1604004 0 species 128 292 genus 1 1980514 0 1873524 1 Halodesulfurarchaeum formicicum 0 292 species 1 29 genus 2424 0 Halobacterium 2239 4 species 552 Halobacterium salinarum 1 2242 0 1407499 1 Halobacterium hubeiense 0 1095 species 2668073 1 0 748 no rank Halobacterium sp. DL1 751944 1 0 species 748 0 2 332246 Halalkalicoccus 59 1 834 genus 0 1 413810 Halalkalicoccus jeotgali 775 species 1 110 family 8718 0 Haloarculaceae 16 1963268 Halorhabdus 3 146825 0 genus 1510 1 67 301 species 1 430914 Halorhabdus tiamatea 0 0 1 146826 Halorhabdus utahensis 1142 species 0 3 63743 Natronomonas 7 1 1633 genus species 649 Natronomonas moolapensis 1 416273 0 0 1 2257 Natronomonas pharaonis 977 species 1 1 genus 1110 0 Halomicrobium 203135 2 1109 species 0 57705 1 Halomicrobium mukohataei 2237 5 Haloarcula 0 3021 genus 94 1 no rank 637 0 1 2624677 species 637 0 Haloarcula sp. CBA1115 1592728 1 814 species 0 1 51589 Haloarcula hispanica 0 Haloarcula taiwanensis 1 1932004 species 576 species 900 Haloarcula marismortui 2238 1 0 genus 1334 1 28 Halorientalis 1073987 2 0 1 2648975 0 1306 no rank species 1306 0 Halorientalis sp. IM1011 1932360 1 0 Natrialbales 1644060 17 1 62 order 7529 family 7467 1 161 Natrialbaceae 1644061 16 0 Natrialba 2 63742 0 genus 427 1 1 0 13769 1 Natrialba magadii 426 species genus 993 1 8 Halopiger 387342 2 0 1 387343 Halopiger xanaduensis 0 985 species genus 825 29287 1 0 825 species 1 29288 Natronococcus occultus 0 genus 512 0 1 1269201 0 1 2621923 512 no rank species 512 Salinarchaeum sp. Harcht-Bsk1 1333523 1 0 841 genus 0 203193 1 841 species 229731 1 Halobiforma lacisalsi 0 2256 1 0 317 genus 317 species 44930 1 Natronobacterium gregoryi 0 0 3 88723 Natrinema 13 1 1295 genus 662 no rank 1 2622230 0 0 406552 1 Natrinema sp. J7-2 662 species 0 Natrinema pellirubrum 69525 1 species 620 353799 1 0 genus 452 353800 1 Halostagnicola larsenii 0 452 species 0 Haloterrigena 3 121871 1 14 genus 1644 425 species 0 1 588898 Haloterrigena daqingensis 1205 species 62320 1 Haloterrigena turkmenica 0 8253 order 118 1 18 1644055 Haloferacales 0 Halorubraceae 8 1963271 0 family 3349 1 98 1644057 2 Salinigranum 0 1327 genus 2 1 Salinigranum rubrum 755307 1 0 species 1325 Halorubrum 3 56688 0 genus 1310 1 55 Halorubrum trapanicum 29284 1 0 species 750 Halorubrum lacusprofundi 1 2247 0 species 505 0 Halopenitus 1209988 2 1 10 genus 614 species 604 Halopenitus persicus 1 1048396 0 family 4103 1 3 Haloferacaceae 8 1644056 0 173 genus 293431 1 0 Haloquadratum walsbyi 293091 1 0 species 173 2251 4 Haloferax 0 3291 genus 66 1 species 1446 0 Haloferax gibbonsii 1 35746 0 1 2246 Haloferax volcanii 1411 species 368 species 0 2252 1 Haloferax mediterranei 2 1 636 genus 0 2 60846 Halogeometricum 634 species 0 1 60847 Halogeometricum borinquense no rank 683 2678336 1 0 0 halophilic archaeon DL31 1 756883 species 683 Methanomicrobia 224756 51 0 class 20618 1 18 1 30 order 13010 0 Methanosarcinales 30 94695 0 Methanosarcinaceae 25 2206 1 18 family 11536 522 genus 1 1 2220 2 Methanolobus 0 1 420950 Methanolobus psychrophilus 0 521 species 30 1 547 genus 0 2175 3 Methanohalophilus 0 1 2177 Methanohalophilus halophilus 278 species 239 species 1 2176 Methanohalophilus mahii 0 Methanosarcina 2207 13 0 genus 8841 1 101 2209 1 Methanosarcina mazei 0 899 species species 451 Methanosarcina lacustris 170861 1 0 0 2208 1 Methanosarcina barkeri 1646 species species 636 Methanosarcina acetivorans 2214 1 0 0 4 2644672 2250 no rank 0 1434102 1 Methanosarcina sp. WH1 359 species 460 species 0 1 1434103 Methanosarcina sp. WWM596 551 species 0 1 1434099 Methanosarcina sp. Kolksee 0 1 1434100 Methanosarcina sp. MTP4 880 species 0 418008 1 Methanosarcina horonobensis 992 species species 943 Methanosarcina siciliae 38027 1 0 0 2210 1 Methanosarcina thermophila 416 species species 507 Methanosarcina vacuolata 1 2215 0 0 2225 2 genus 468 197 species 1 2226 Methanococcoides methylutens 0 species 271 0 Methanococcoides burtonii 1 29291 genus 251 1 196136 0 0 39669 1 Methanosalsum zhilinae 251 species 290 genus 1 2321 0 species 290 Methanohalobium evestigatum 2322 1 0 genus 599 1 2 Methanomethylovorans 101191 2 0 101192 1 Methanomethylovorans hollandica 0 597 species 0 Methanosaetaceae 4 143067 1 1 family 1444 1443 genus 4 1 2222 3 Methanothrix 0 Methanosaeta harundinacea 1 301375 0 species 570 1 2223 Methanothrix soehngenii 0 869 species 12 1 1878 order 0 570264 5 Methanocellales 1 3 family 1866 0 Methanocellaceae 570265 4 1 6 genus 1863 0 Methanocella 570266 3 Methanocella arvoryzae 1 1175445 0 species 1359 498 species 0 1175444 1 Methanocella conradii 0 Methanomicrobiales 15 2191 1 60 order 5712 196137 1 0 family 272 2202 1 0 272 genus Methanospirillum hungatei 2203 1 0 species 272 1 10 family 1874 0 Methanoregulaceae 6 1198451 1334 genus 3 1 3 395331 Methanoregula 0 0 1 882104 Methanoregula formicica 747 species 584 species 0 1 358766 Methanoregula boonei 1 1 530 genus 0 2 475087 Methanosphaerula 0 1 475088 Methanosphaerula palustris 529 species 0 6 2194 Methanomicrobiaceae 3 1 2693 family 1 30 genus 2402 0 Methanoculleus 4 45989 species 723 0 Methanoculleus marisnigri 2198 1 species 817 0 Methanoculleus bourgensis 83986 1 2619537 1 0 no rank 832 832 species 1 86622 Methanoculleus sp. MAB1 0 0 230355 1 288 genus species 288 Methanolacinia petrolearia 1 54120 0 813 family 1 88404 0 0 1 2192 813 genus 813 species 83984 1 Methanocorpusculum labreanum 0 clade 5143 51 1783275 0 35 phylum 1 51967 0 1 498845 0 genus 35 1 498846 Candidatus Korarchaeum cryptofilum 0 35 species 3268 phylum 28889 39 0 Thermoprotei 39 183924 0 class 3268 1 6 923 order 1 1 2266 14 Thermoproteales 0 family 505 1 4 Thermoproteaceae 7 2267 0 0 76886 1 genus 26 0 76887 1 Caldivirga maquilingensis 26 species 2 2270 0 genus 286 0 Thermoproteus uzoniensis 1 184117 species 182 104 species 0 2271 1 Thermoproteus tenax 164450 2 0 103 genus 0 Vulcanisaeta distributa 1 164451 species 60 1 985052 Vulcanisaeta moutnovskia 0 43 species 0 1 2276 genus 86 0 2277 1 Pyrobaculum islandicum 86 species 0 Thermofilaceae 6 114378 1 22 family 417 1 7 genus 395 0 Thermofilum 5 2268 110 species 0 1 2269 Thermofilum pendens species 27 Thermofilum uzonense 1550241 1 0 species 124 Thermofilum adornatus 1365176 1 0 species 127 0 Thermofilum carboxyditrophus 1483572 1 order 1121 114380 11 0 593 family 2272 8 0 95 genus 0 54253 1 1 54254 Thermosphaera aggregans 0 95 species 0 1 477695 59 genus 1 1200300 Thermogladius calderae 0 59 species 0 2 2279 genus 167 0 Staphylothermus hellenicus 84599 1 species 77 Staphylothermus marinus 1 2280 0 species 90 0 2 54258 66 genus Ignicoccus hospitalis 160233 1 0 species 39 0 Ignicoccus islandicus 54259 1 species 27 206 genus 0 2 2273 species 136 Desulfurococcus mucosus 2275 1 0 94694 1 Desulfurococcus amylolyticus 0 70 species 2307 3 0 family 528 0 2308 1 genus 50 Pyrodictium delaneyi 1 1273541 0 species 50 0 1 54247 215 genus Hyperthermus butylicus 1 54248 0 species 215 263 genus 54251 1 0 263 species 1 54252 Pyrolobus fumarii 0 order 939 8 2281 0 0 8 118883 939 family genus 178 0 1 69655 0 Sulfolobus tokodaii 1 111955 species 178 41980 2 0 genus 78 0 Metallosphaera cuprina 1 1006005 species 38 0 Metallosphaera sedula 43687 1 species 40 3 2284 0 genus 330 0 Sulfolobus acidocaldarius 1 2285 species 56 no rank 125 0 1 2641160 species 125 Sulfolobus sp. A20 1891280 1 0 1 43080 Sulfolobus islandicus 0 149 species 0 2100760 1 genus 219 0 Sulfolobus solfataricus 1 2287 species 219 12914 1 0 134 genus Acidianus hospitalis 563177 1 0 species 134 1 1 order 279 0 Acidilobales 5 871006 871007 2 0 family 164 genus 164 1 4 Acidilobus 2 105850 0 species 160 Acidilobus saccharovorans 242703 1 0 family 114 255472 2 0 1 1 114 genus 0 200414 2 Caldisphaera 0 1 200415 Caldisphaera lagunensis 113 species phylum 1840 651137 11 0 573 no rank 4 651142 0 0 1825023 3 Candidatus Nitrosotenuis 1 1 425 genus species 222 Candidatus Nitrosotenuis sp. AQ6f 1 1846278 0 1603555 1 Candidatus Nitrosotenuis cloacae 0 202 species 0 1 1593364 148 genus 0 1410606 1 Candidatus Nitrosopelagicus brevis 148 species 719 order 0 31932 3 719 family 0 338190 3 genus 557 338191 2 0 0 Candidatus Nitrosopumilus adriaticus 1 1580092 species 200 357 species 0 1229909 1 Candidatus Nitrosopumilus sediminis 0 1993653 1 162 genus 0 1898749 1 Candidatus Nitrosomarinus catalina 162 species class 548 1 1 Nitrososphaeria 1643678 4 0 2 1033996 Nitrososphaerales 0 450 order 1 1 1033997 1 0 449 family 497726 1 0 genus 449 449 species 1034015 1 Nitrososphaera viennensis 0 1968909 1 0 order 97 family 97 0 1 1968910 0 1 498374 genus 97 2045011 1 Candidatus Nitrosocaldus islandicus 0 97 species 1783276 1 0 35 clade 0 1 1801631 35 phylum 2490204 1 0 35 genus 35 species 1 1920749 Candidatus Micrarchaeota archaeon Mia14 0 superkingdom 23589090 1 266 Bacteria 4459 2 0 14368 phylum 0 11 508458 58 1 14368 class 0 11 649775 Synergistia order 14310 1 125 Synergistales 649776 10 0 1 408 family 14185 0 Synergistaceae 9 649777 genus 922 0 1 81466 0 81468 1 Aminobacterium colombiense 922 species genus 500 1 336260 0 500 species 1 336261 Thermovirga lienii 0 Thermanaerovibrio 81461 2 0 genus 1641 1 8 1 81462 Thermanaerovibrio acidaminovorans 0 1633 species 10097 genus 32 1 2 508459 Cloacibacillus 0 0 1197717 1 Cloacibacillus porcorum 10065 species 0 2 49894 Acetomicrobium 7 1 617 genus 0 1 97477 Acetomicrobium mobile 610 species 0 57723 21 Acidobacteria 1 1 20854 phylum 3 1562566 Blastocatellia 0 2251 class 7 1 458032 2 Chloracidobacterium 0 2244 genus 23 1 species 2221 Chloracidobacterium thermophilum 458033 1 0 class 18602 1 213 Acidobacteriia 17 204432 0 0 Solibacterales 4 332160 1 262 order 3871 3609 family 15 1 332161 3 Solibacteraceae 0 1 21 genus 3594 0 Candidatus Solibacter 2 332162 3573 species 332163 1 Candidatus Solibacter usitatus 0 14518 order 214 1 12 204433 Acidobacteriales 0 family 14304 1 162 Acidobacteriaceae 204434 11 0 1 85 genus 3778 0 Terriglobus 392733 3 2119 species 392734 1 Terriglobus roseus 0 species 1574 Terriglobus saanensis 1 870903 0 0 33973 2 Acidobacterium 3 1 2798 genus 0 33075 1 Acidobacterium capsulatum 2795 species Candidatus Koribacter 2 658061 0 genus 3593 1 20 species 3573 0 Candidatus Koribacter versatilis 1 658062 940557 3 Granulicella 0 3973 genus 25 1 species 2138 0 Granulicella mallensis 940614 1 1810 species 940615 1 Granulicella tundricola 0 200938 5 0 phylum 5940 37 1 5940 class 0 5 118001 Chrysiogenetes 0 189769 4 Chrysiogenales 21 1 5903 order 2 1 5882 family 0 3 189770 Chrysiogenaceae 5880 genus 10 1 2 393029 Desulfurispirillum 0 0 Desulfurispirillum indicum 1 936456 species 5870 2638 phylum 1930617 5 0 0 Calditrichae 5 1962850 1 5 class 2638 1 20 order 2633 0 Calditrichales 1962852 4 1962854 3 Calditrichaceae 0 2613 family 5 1 0 Caldithrix 187144 2 1 10 genus 2608 species 2598 Caldithrix abyssi 187145 1 0 15331921 clade 0 1720 1783272 0 Tenericutes 544448 102 1 1 phylum 32147 no rank 6013 0 713063 2 species 2993 Tenericutes bacterium MO-XQ 1 1911684 0 3020 species 0 1911683 1 Tenericutes bacterium MZ-XQ 2 2799557 0 585 no rank 1 1 585 genus 0 1912503 2 Candidatus Izimaplasma 2624196 1 0 no rank 584 species 584 0 Candidatus Izimaplasma sp. HR1 1 1541959 97 31969 Mollicutes 0 25548 class 109 1 2085 44 Mycoplasmatales 0 8743 order 20 1 43 2092 Mycoplasmataceae 0 8723 family 68 1 110 1 5622 genus 0 27 2093 Mycoplasma species 271 Mycoplasma arthritidis 1 2111 0 0 2100 1 Mycoplasma hyorhinis 113 species 86660 1 Mycoplasma dispar 0 176 species 2683645 1 0 287 no rank 0 1749074 1 Mycoplasma sp. (ex Biomphalaria glabrata) 287 species species 252 Mycoplasma canadense 29554 1 0 species 197 0 Mycoplasma putrefaciens 1 2123 species 95 0 Mycoplasma suis 57372 1 species 38 Mycoplasma ovis 171632 1 0 30 species 0 65123 1 Mycoplasma wenyonii species 121 0 Mycoplasma flocculare 2128 1 species 277 0 Mycoplasma gallisepticum 2096 1 species 166 0 Mycoplasma crocodyli 50052 1 0 Mycoplasma hominis 2098 1 species 701 0 29501 1 Mycoplasma haemofelis 39 species 244 species 45362 1 Mycoplasma bovoculi 0 species 214 0 Mycoplasma penetrans 28227 1 species group 1234 3 656088 0 1 2102 Mycoplasma mycoides 0 697 species 1 2095 Mycoplasma capricolum 0 291 species 0 1 2105 Mycoplasma leachii 246 species 0 Mycoplasma genitalium 2097 1 species 64 Mycoplasma pneumoniae 2104 1 0 species 35 0 51365 1 Mycoplasma yeatsii 350 species species 74 Mycoplasma parvum 984991 1 0 223 species 0 1 2099 Mycoplasma hyopneumoniae species 57 0 Mycoplasma haemocanis 1 136241 0 Mycoplasma mobile 2118 1 species 254 0 Ureaplasma 2129 3 1 1 genus 403 species 172 0 Ureaplasma urealyticum 1 2130 species 230 Ureaplasma parvum 134821 1 0 genus 2630 2767358 12 0 0 1 28903 Mycoplasma bovis 354 species species 164 0 Mycoplasma arginini 1 2094 0 2115 1 Mycoplasma fermentans 383 species Mycoplasma bovigenitalium 2112 1 0 species 115 212 species 0 29555 1 Mycoplasma canis 0 Mycoplasma pullorum 1 48003 species 103 2113 1 Mycoplasma californicum 0 172 species 261 species 2107 1 Mycoplasma pulmonis 0 species 330 0 Mycoplasma agalactiae 2110 1 0 2109 1 Mycoplasma synoviae 250 species Mycoplasma cynos 1 171284 0 species 205 1 29553 Mycoplasma bovirhinis 0 81 species Acholeplasmatales 13 186329 0 order 6015 1 14 Acholeplasmataceae 12 2146 0 family 6001 1 11 5 2147 Acholeplasma 0 3951 genus 102 1 1157 species 1 38986 Acholeplasma palmae 0 0 35623 1 Acholeplasma oculi 646 species 1 61635 Acholeplasma brassicae 0 955 species 1 2148 Acholeplasma laidlawii 0 1091 species 1 40 genus 2039 0 Candidatus Phytoplasma 6 33926 1 85630 0 species group 258 0 Candidatus Phytoplasma mali 1 37692 species 258 85620 3 0 1328 species group 100379 1 Onion yellows phytoplasma 0 486 species 447 species 0 1 202462 Maize bushy stunt phytoplasma 395 species 1 229545 Aster yellows witches'-broom phytoplasma 0 85632 1 0 413 species group 0 Candidatus Phytoplasma australiense 59748 1 species 413 order 10681 1 7 Entomoplasmatales 39 186328 0 6542 family 9 1 2131 24 Spiroplasmataceae 0 256 1 6533 genus 0 23 2132 Spiroplasma 0 2145 1 Spiroplasma taiwanense 185 species 193 species 0 1 216936 Spiroplasma diminutum 2144 1 Spiroplasma mirum 0 277 species Spiroplasma sabaudiense 1 216944 0 species 258 0 Spiroplasma litorale 1 216942 species 209 0 1114980 1 Spiroplasma atrichopogonis 284 species 249 species 0 1 2133 Spiroplasma citri species 373 Spiroplasma helicoides 1 216938 0 0 1 315358 Spiroplasma eriocheiris 333 species 1 216945 Spiroplasma syrphidicola 0 401 species species 427 0 Spiroplasma chrysopicola 216933 1 0 216934 1 Spiroplasma corruscae 178 species 0 2 2637901 no rank 826 Spiroplasma sp. NBRC 100390 1 1914410 0 species 413 1898044 1 Spiroplasma sp. TU-14 0 413 species 0 Spiroplasma floricola 216937 1 species 251 0 Spiroplasma turonicum 216946 1 species 329 0 1 362837 Spiroplasma cantharicola 272 species species 211 Spiroplasma apis 1 2137 0 194 species 0 1 2136 Spiroplasma monobiae 0 1 2139 Spiroplasma clarkii 321 species Spiroplasma culicicola 1 216935 0 species 254 species 252 0 Spiroplasma kunkelii 47834 1 8 1 4132 family 0 33925 14 Entomoplasmataceae 3129 genus 116 1 46239 8 Mesoplasma 0 species 556 Mesoplasma entomophilum 1 2149 0 529 species 0 1 225999 Mesoplasma syrphidae species 520 0 Mesoplasma coleopterae 1 324078 169 species 0 1 219745 Mesoplasma tabanidae 439 species 0 1 2151 Mesoplasma florum 1 216427 Mesoplasma chauliocola 0 164 species Mesoplasma lactucae 138853 1 0 species 636 0 Entomoplasma 5 46238 1 5 genus 995 1 74700 Entomoplasma freundtii 0 362 species 211 species 0 1 215578 Entomoplasma somnilux 0 Entomoplasma luminosum 214888 1 species 208 0 81459 1 Entomoplasma melaleucae 209 species 74525 phylum 0 36 1297 0 188787 36 Deinococci 508 1 74525 class order 48420 1 657 Deinococcales 118964 15 0 183710 14 Deinococcaceae 0 47763 family 337 1 genus 47426 1 691 Deinococcus 1298 13 0 Deinococcus swuensis 1 1182571 0 species 5477 species 2345 0 Deinococcus maricopensis 1 309887 species 4171 0 Deinococcus soli Cha et al. 2016 1 1309411 0 1182568 1 Deinococcus puniceus 3837 species 4699 species 1 1768108 Deinococcus actinosclerus 0 3712 species 0 1 68909 Deinococcus geothermalis 0 Deinococcus peraridilitoris 1 432329 species 2450 species 3751 0 Deinococcus radiodurans 1 1299 species 4200 0 Deinococcus gobiensis 502394 1 species 6182 Deinococcus proteolyticus 55148 1 0 0 2623546 1 3668 no rank 1 2080419 Deinococcus sp. NW-56 0 3668 species 2243 species 0 310783 1 Deinococcus deserti 0 68933 17 Thermales 410 1 23534 order family 23124 1 183 Thermaceae 16 188786 0 24 1 5221 genus 0 65551 3 Meiothermus 1 52022 Meiothermus silvanus 0 1691 species 3506 species 277 1 Meiothermus ruber 0 2 208447 Oceanithermus 0 3505 genus 9 1 0 Oceanithermus profundus 187137 1 species 3496 Marinithermus 2 186191 0 genus 1802 1 1 1801 species 186192 1 Marinithermus hydrothermalis 0 8 270 Thermus 0 12413 genus 160 1 Thermus thermophilus 1 274 0 species 3774 0 2619321 1 no rank 1461 1 1111069 Thermus sp. CCB_US3_UF1 0 1461 species 828 species 0 1 56956 Thermus brockianus species 1772 0 Thermus aquaticus 271 1 species 1646 0 Thermus oshimai 1 56957 456163 1 Thermus parvatiensis 0 1392 species 37636 1 Thermus scotoductus 0 1380 species order 2063 0 3 2762275 family 2063 1 19 Trueperaceae 3 332247 0 1 40 genus 2044 0 Truepera 2 332248 species 2004 0 Truepera radiovictrix 332249 1 no rank 934 0 2 1859062 0 Thermobaculum 2 262406 1 151 genus 934 Thermobaculum terrenum 1 166501 0 species 783 0 Chloroflexi 48 200795 1 6 phylum 37472 Anaerolineae 292625 8 0 class 9538 1 17 7 292629 Anaerolineales 0 9521 order 23 1 9498 family 19 1 292628 6 Anaerolineaceae 0 0 1324991 1 5432 no rank Anaerolineaceae bacterium oral taxon 439 1889813 1 0 species 5432 1 8 genus 1725 0 Brevefilum 2019482 2 species 1717 Brevefilum fermentans 1 1986204 0 Anaerolinea 2 233189 0 genus 2322 1 8 0 Anaerolinea thermophila 1 167964 species 2314 2 1 2942 class 0 475962 5 Caldilineae 2940 order 41 1 475963 4 Caldilineales 0 1 12 family 2899 0 Caldilineaceae 475964 3 31 1 2887 genus 0 233191 2 Caldilinea species 2856 Caldilinea aerophila 1 133453 0 1 151 class 7793 0 Chloroflexia 32061 11 0 10 32064 Chloroflexales 54 1 7642 order suborder 4861 0 4 1508595 0 4 1508635 Roseiflexaceae 28 1 4861 family 0 Roseiflexus 120961 3 1 13 genus 4833 1 2609473 0 no rank 2839 0 1 357808 Roseiflexus sp. RS-1 2839 species Roseiflexus castenholzii 120962 1 0 species 1981 suborder 2727 0 1508594 5 Chloroflexaceae 1106 5 0 family 2727 1 5 0 Chloroflexus 1107 4 1 201 genus 2722 0 Chloroflexus aggregans 152260 1 species 551 0 2 1108 Chloroflexus aurantiacus 985 1 1970 species Chloroflexus sp. Y-400-fl 480224 1 0 strain 985 1 149 class 6729 0 Ardenticatenia 5 1382928 Ardenticatenales 4 1382929 0 order 6580 1 29 family 6551 1 31 Ardenticatenaceae 1382930 3 0 1988031 2 Candidatus Promineofilum 0 6520 genus 16 1 1806508 1 Candidatus Promineofilum breve 0 6504 species Dehalococcoidia 301297 9 0 class 7398 1 38 3 670486 Dehalogenimonas 0 3179 genus 47 1 Dehalogenimonas formicexedens 1839801 1 0 species 1982 1 552810 Dehalogenimonas lykanthroporepellens 0 1150 species Dehalococcoidales 1202465 5 0 order 4181 1 8 4 1202464 Dehalococcoidaceae 0 4173 family 23 1 genus 4150 1 17 Dehalococcoides 61434 3 0 Dehalococcoides mccartyi 1 61435 0 species 3458 no rank 675 1 237581 0 0 1522671 1 Dehalococcoides sp. UCH007 675 species 22 1 3066 class 0 189775 9 Thermomicrobia 0 85000 4 subclass 2171 2171 order 36 1 4 85001 Sphaerobacterales 0 255728 3 0 2135 suborder 2135 family 23 1 3 85002 Sphaerobacteraceae 0 1 52 genus 2112 0 Sphaerobacter 2 2056 species 2060 Sphaerobacter thermophilus 1 2057 0 873 order 6 1 4 189776 Thermomicrobiales 0 6 1 867 family 0 3 189777 Thermomicrobiaceae Thermomicrobium 499 2 0 genus 861 1 4 1 500 Thermomicrobium roseum 0 857 species 0 1798711 147 clade 96783 96783 phylum 12 1 147 1117 Cyanobacteria 0 0 Chroococcidiopsidales 1890505 4 1 1 order 674 1890528 3 Chroococcidiopsidaceae 0 673 family 16 1 2 1 657 genus 0 54298 2 Chroococcidiopsis 54299 1 Chroococcidiopsis thermalis 0 655 species 1983111 1 0 328 no rank species 328 cyanobacterium endosymbiont of Epithemia turgida 718217 1 0 order 1521 1 84 Pleurocapsales 6 52604 0 1 1 family 677 0 Dermocarpellaceae 1890498 3 genus 676 2 102115 0 no rank 348 0 2642663 1 1 1807358 Stanieria sp. NIES-3757 0 348 species 328 species 0 102116 1 Stanieria cyanosphaera 760 family 0 1890500 2 760 genus 2 1 44474 2 Pleurocapsa 0 Pleurocapsa minor 1 54308 0 species 758 subclass 17205 1301283 40 0 1118 23 Chroococcales 0 8138 order 17 1 0 1890449 4 Microcystaceae 27 1 2112 family 1125 3 Microcystis 0 2085 genus 37 1 0 1 2643300 660 no rank species 660 0 Microcystis sp. MC19 1 1967666 0 1126 1 Microcystis aeruginosa 1388 species 3297 family 0 8 1890450 no rank 305 1 92682 0 1 76023 0 genus 305 305 no rank 0 2632878 1 305 species 0 1 65093 Halothece sp. PCC 7418 genus 785 2 2546365 0 0 2 2546366 785 species strain 350 0 Cyanothece sp. PCC 8801 41431 1 strain 435 Cyanothece sp. PCC 8802 395962 1 0 0 1 263510 577 genus 1 2546360 0 species 577 strain 577 Cyanothece sp. ATCC 51142 43989 1 0 1235 genus 0 28070 2 2546359 1 0 530 species 530 strain 1 497965 Cyanothece sp. PCC 7822 0 0 2546356 1 705 species strain 705 0 Cyanothece sp. PCC 7424 65393 1 4 1 395 genus 0 2 1453359 Candidatus Atelocyanobacterium Candidatus Atelocyanobacterium thalassa 1 713887 0 species 391 695 family 1 1 1890452 3 Cyanobacteriaceae 0 0 Cyanobacterium 102234 2 1 6 genus 694 species 688 Cyanobacterium aponinum 379064 1 0 Chroococcaceae 7 1890464 0 family 2017 1 16 0 Gloeocapsa 2 102231 1 5 genus 368 0 1 2623012 363 no rank Gloeocapsa sp. PCC 7428 1173026 1 0 species 363 301 genus 1 268175 0 no rank 301 0 1 2648896 301 species 0 1 2005460 Chondrocystis sp. NIES-4102 1332 genus 5 1 669357 3 Geminocystis 0 0 2 2625037 1327 no rank 1 1617448 Geminocystis sp. NIES-3709 0 831 species 496 species 0 1 1615909 Geminocystis sp. NIES-3708 1 113 order 9067 0 Oscillatoriales 1150 17 family 2755 1 49 Coleofasciculaceae 3 1892251 0 2706 genus 20 1 2 63132 Geitlerinema 0 2686 no rank 0 2648775 1 0 Geitlerinema sp. PCC 7407 1 1173025 species 2686 family 682 1 60 Gomontiellaceae 2 1892255 0 genus 622 1 241421 0 622 species 241425 1 Crinalium epipsammum 0 1 17 family 1454 0 Cyanothecaceae 3 1892249 0 Cyanothece 2 43988 1 54 genus 1437 1 2649277 0 no rank 1383 species 1383 0 Cyanothece sp. PCC 7425 1 395961 2 1892252 0 family 1666 genus 659 0 1 44471 no rank 659 1 2642155 0 0 Microcoleus sp. PCC 7113 1 1173027 species 659 0 1 1205 1007 genus 1206 1 Trichodesmium erythraeum 0 1007 species 0 1892254 6 Oscillatoriaceae 3 1 2397 family 1155738 2 Moorea 0 624 genus 7 1 0 1 1155739 Moorea producens 617 species 0 Oscillatoria 1158 3 1 22 genus 1770 species 1218 0 Oscillatoria nigro-viridis 1 482564 species 530 Oscillatoria acuminata 1 118323 0 18459 order 29 1 34 1161 Nostocales 0 8 2661849 0 4933 family 4933 genus 68 1 8 1186 Calothrix 0 species 593 0 Calothrix parietina 32054 1 4272 no rank 2619626 6 0 0 2005469 1 Calothrix sp. NIES-4071 1690 species species 323 Calothrix sp. 336/3 1337936 1 0 species 498 0 Calothrix sp. NIES-3974 2005462 1 544 species 2005461 1 Calothrix sp. NIES-4101 0 species 539 0 Calothrix sp. NIES-2098 1954171 1 Calothrix sp. PCC 7507 1 99598 0 species 678 1162 18 Nostocaceae 0 11371 family 52 1 genus 1034 1 3 Trichormus 3 264688 0 0 Trichormus azollae 1 1164 species 289 742 species 0 1 264691 Trichormus variabilis 0 Nostoc 1177 10 1 30 genus 8087 0 Nostoc flagelliforme 1306274 1 species 2586 2593658 7 0 no rank 4478 0 1618022 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 929 species 503 species 1 103690 Nostoc sp. PCC 7120 0 species 576 0 Nostoc sp. PCC 7524 28072 1 424 species 0 1751286 1 Nostoc sp. NIES-3756 0 Nostoc sp. CENA543 1869241 1 species 493 species 1126 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 1261031 0 Nostoc sp. PCC 7107 317936 1 species 427 Nostoc punctiforme 272131 1 0 species 993 2198 genus 2 1 4 1163 Anabaena 0 no rank 998 0 2619674 2 species 446 0 Anabaena sp. 90 1 46234 species 552 Anabaena sp. WA102 1647413 1 0 0 Anabaena cylindrica 1165 1 species 1198 477 no rank 0 1219117 1 species 477 Nostocales cyanobacterium HT-58-2 1 1940762 0 0 1185 3 Rivulariaceae 9 1 1160 family 373984 2 Rivularia 0 1151 genus 1 1 0 2676603 1 no rank 1150 1150 species 0 1 373994 Rivularia sp. PCC 7116 3 1892263 Hapalosiphonaceae 0 489 family 2 1 487 genus 2 1 2 1190 Fischerella 0 no rank 485 1 494603 0 species 485 0 Fischerella sp. NIES-3754 1 1752063 307596 6 Gloeobacteria 0 6090 class 113 1 307595 5 Gloeobacterales 0 5977 order 54 1 4 1890422 Gloeobacteraceae 0 5923 family 43 1 genus 5880 1 69 Gloeobacter 33071 3 0 33072 1 Gloeobacter violaceus 0 3645 species 0 Gloeobacter kilaueensis 1416614 1 species 2166 Synechococcales 55 1890424 0 order 52494 1 790 family 652 0 1890436 2 5 1 652 genus 0 1152 2 Pseudanabaena no rank 647 2593292 1 0 0 Pseudanabaena sp. PCC 7367 82654 1 species 647 family 6334 1 34 Leptolyngbyaceae 6 1890438 0 0 47251 5 Leptolyngbya 5 1 6300 genus Leptolyngbya boryana 1 1184 0 species 1020 0 3 2650499 5275 no rank species 3346 0 Leptolyngbya sp. O-77 1080068 1 1752064 1 Leptolyngbya sp. NIES-3755 0 1076 species 0 1 111781 Leptolyngbya sp. PCC 7376 853 species 0 2303730 2 1239 family Halomicronema 2 170610 0 genus 1239 1 6 1233 species 1209493 1 Halomicronema hongdechloris 0 0 5 1890428 Merismopediaceae 3 1 3312 family 1 61 genus 3309 0 Synechocystis 1142 4 0 2640012 3 no rank 3248 2116702 1 Synechocystis sp. IPPAS B-1465 0 942 species 1364 species 0 1147 1 Synechocystis sp. PCC 6714 1 1148 Synechocystis sp. PCC 6803 0 942 species 37133 family 194 1 32 1890426 Synechococcaceae 0 365 genus 0 13034 1 292566 1 Dactylococcopsis salina 0 365 species 1129 26 Synechococcus 0 28435 genus 481 1 Synechococcus lividus 1 33070 0 species 667 no rank 26056 0 23 2626047 Synechococcus sp. PCC 6312 195253 1 0 species 463 0 Synechococcus sp. CC9605 110662 1 species 2027 459 species 0 1 195498 Synechococcus sp. PCC 7117 1 195248 Synechococcus sp. PCC 8807 0 596 species species 1440 Synechococcus sp. WH 8103 29410 1 0 1643 species 316278 1 Synechococcus sp. RCC307 0 0 Synechococcus sp. KORDI-49 1 585423 species 1521 species 1506 0 Synechococcus sp. WH 8109 166314 1 0 Synechococcus sp. PCC 7003 1 374981 species 940 1520 species 0 1350461 1 Synechococcus sp. UTEX 2973 2997 species 321327 1 Synechococcus sp. JA-3-3Ab 0 1280380 1 Synechococcus sp. KORDI-100 0 763 species Synechococcus sp. NIES-970 1827144 1 0 species 741 species 401 Synechococcus sp. CC9311 1 64471 0 84588 1 Synechococcus sp. WH 8102 0 1419 species 1 374982 Synechococcus sp. PCC 73109 0 453 species 1164 species 585425 1 Synechococcus sp. KORDI-52 0 species 1502 Synechococcus sp. JA-2-3B'a(2-13) 321332 1 0 0 1 316279 Synechococcus sp. CC9902 1146 species species 382 Synechococcus sp. PCC 7502 1 1173263 0 0 Synechococcus sp. WH 7803 1 32051 species 998 1916956 1 Synechococcus sp. SynAce01 0 1444 species species 531 Synechococcus sp. PCC 7002 32049 1 0 0 1 32046 Synechococcus elongatus 1231 species Cyanobium 167375 3 0 genus 7668 1 84 Cyanobium gracile 59930 1 0 species 3421 1 2627006 0 4163 no rank 4163 species 1851505 1 Cyanobium sp. NIES-981 0 genus 471 1 146785 0 471 species 146786 1 Thermosynechococcus elongatus 0 0 1890429 2 family 761 1 1 genus 761 0 Acaryochloris 155977 2 760 species 155978 1 Acaryochloris marina 0 1213 5 Prochloraceae 0 2273 family 1 1 genus 2272 1 23 Prochlorococcus 4 1218 0 species 1710 0 Prochlorococcus marinus 1 1219 no rank 539 0 2 2627481 species 343 Prochlorococcus sp. MIT 0604 1501268 1 0 species 196 Prochlorococcus sp. MIT 0801 1501269 1 0 phylum 1378 5 67819 0 1663419 5 Fimbriimonadia 0 1378 class 4 1 13 1 1374 order 0 4 1663425 Fimbriimonadales 0 Fimbriimonadaceae 3 1663426 1 19 family 1361 Fimbriimonas 1005038 2 0 genus 1342 1 2 Fimbriimonas ginsengisoli 1005039 1 0 species 1340 1 489 phylum 12910916 0 Firmicutes 724 1239 11594792 class 931 1 186801 227 Clostridia 0 Natranaerobiales 485256 4 0 order 2100 1 30 2070 family 7 1 3 485255 Natranaerobiaceae 0 1 235 genus 2063 0 Natranaerobius 375928 2 Natranaerobius thermophilus 375929 1 0 species 1828 4 2770089 0 3647 order family 2121 2 2770093 0 291988 2 Thermosediminibacter 0 2121 genus 64 1 species 2057 0 Thermosediminibacter oceani 1 291990 1526 family 2770092 2 0 0 Tepidanaerobacter 2 499228 1 1 genus 1526 species 1525 0 Tepidanaerobacter acetatoxydans 499229 1 7 1 5679 order 0 53433 12 Halanaerobiales 1 9 family 1806 0 Halobacteroidaceae 5 53434 2 28186 Acetohalobium 0 1123 genus 2 1 1121 species 0 1 28187 Acetohalobium arabaticum 0 Halobacteroides 42417 2 1 5 genus 674 0 1 42422 Halobacteroides halobius 669 species 972 6 Halanaerobiaceae 0 3866 family 9 1 0 Halanaerobium 2330 3 1 35 genus 2707 1332 species 0 1 656519 Halanaerobium hydrogeniformans species 1340 Halanaerobium praevalens 1 2331 0 32636 2 Halothermothrix 0 1150 genus 5 1 0 1 31909 Halothermothrix orenii 1145 species order 39540 1 126 Thermoanaerobacterales 68295 39 0 21308 family 47 1 186814 20 Thermoanaerobacteraceae 0 6143 no rank 0 4 42857 2052 genus 17 1 42837 2 Ammonifex 0 0 Ammonifex degensii 1 42838 species 2035 Moorella 44260 2 0 genus 4091 1 47 4044 species 0 1525 1 Moorella thermoacetica 129957 2 Carboxydothermus 0 3116 genus 6 1 1 129958 Carboxydothermus hydrogenoformans 0 3110 species genus 1928 1 48 Caldanaerobacter 249529 2 0 species 1880 Caldanaerobacter subterraneus 911092 1 0 140458 2 Thermacetogenium 0 1676 genus 6 1 0 85874 1 Thermacetogenium phaeum 1670 species 0 1754 9 Thermoanaerobacter 418 1 8398 genus species 593 Thermoanaerobacter mathranii 583357 1 0 species 1161 Thermoanaerobacter kivui 2325 1 0 2362 no rank 0 2636821 2 0 Thermoanaerobacter sp. X513 573062 1 species 1118 Thermoanaerobacter sp. X514 1 399726 0 species 1244 1 29323 Thermoanaerobacter brockii 0 1152 species 0 46354 1 Thermoanaerobacter wiegelii 899 species 1 108150 Thermoanaerobacter italicus 0 661 species 1152 species 496866 1 Thermoanaerobacter pseudethanolicus 0 family 15898 1 91 Thermoanaerobacterales Family III. Incertae Sedis 543371 13 0 genus 5830 1 47 Thermoanaerobacterium 28895 3 0 species 2190 0 Thermoanaerobacterium xylanolyticum 29329 1 3593 species 1 1517 Thermoanaerobacterium thermosaccharolyticum 0 Caldicellulosiruptor 9 44000 0 genus 9977 1 257 1744 species 0 44001 1 Caldicellulosiruptor saccharolyticus 0 31899 1 Caldicellulosiruptor bescii 828 species 1327 species 1 717609 Caldicellulosiruptor obsidiansis 0 species 1285 0 Caldicellulosiruptor kronotskyensis 413889 1 988 species 0 1 55205 Caldicellulosiruptor owensensis 0 Caldicellulosiruptor hydrothermalis 413888 1 species 1356 Caldicellulosiruptor lactoaceticus 52766 1 0 species 1018 species 1174 0 Caldicellulosiruptor kristjanssonii 52765 1 48 1 1662 family 0 3 543372 Thermoanaerobacterales Family IV. Incertae Sedis 0 252965 2 Mahella 22 1 1614 genus 0 Mahella australiensis 1 252966 species 1592 546 family 0 2 227387 546 genus 2 1 2 227388 Thermodesulfobium 0 species 544 Thermodesulfobium narugense 184064 1 0 Clostridiales 186802 167 0 order 11542895 1 52782 3 31984 Heliobacteriaceae 0 9364 family 53 1 genus 9311 1 127 Heliobacterium 2 2697 0 Heliobacterium modesticaldum 35701 1 0 species 9184 1 3548 family 192606 0 Clostridiaceae 41 31979 Alkaliphilus 114627 3 0 genus 6190 1 20 0 Alkaliphilus oremlandii 461876 1 species 2744 Alkaliphilus metalliredigens 208226 1 0 species 3426 3169 genus 104 1 4 49082 Candidatus Arthromitus 0 no rank 3065 0 2638829 3 0 Candidatus Arthromitus sp. SFB-rat-Yit 1 1041504 species 1502 species 780 Candidatus Arthromitus sp. SFB-mouse 49118 1 0 783 species 0 1 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 6 1 6547 genus 0 2 390805 Geosporobacter 6541 species 0 1424294 1 Geosporobacter ferrireducens 352 genus 1 1981033 Mordavella 0 1 1960 genus 172800 0 Clostridium 30 1485 0 1493 1 Clostridium cellulovorans 2730 species 0 Clostridium botulinum 1491 1 species 12419 0 Clostridium taeniosporum 1 394958 species 1857 Clostridium cochlearium 1 1494 0 species 3533 species 2437 Clostridium argentinense 29341 1 0 1586 species 0 1 46867 Clostridium chauvoei 217159 1 Clostridium carboxidivorans 0 2483 species species 4662 0 Clostridium beijerinckii 1520 1 species 3151 0 Clostridium scatologenes 1 1548 0 1 84022 Clostridium aceticum 3221 species species 3105 0 Clostridium butyricum 1 1492 1502 1 Clostridium perfringens 0 18126 species 0 1 1216932 Clostridium bornimense 2618 species 0 Clostridium autoethanogenum 84023 1 species 3085 species 2647 Clostridium saccharobutylicum 1 169679 0 species 3298 0 Clostridium ljungdahlii 1 1538 64224 no rank 0 2 2614128 58078 species 0 1042156 1 Clostridium sp. SY8519 6146 species 0 755731 1 Clostridium sp. BNL1100 species 2222 0 Clostridium sporogenes 1 1509 2560 species 0 1488 1 Clostridium acetobutylicum 0 1 1561 Clostridium baratii 3225 species 1542 1 Clostridium novyi 0 1252 species 0 1501 1 Clostridium pasteurianum 4575 species species 3931 Clostridium formicaceticum 1 1497 0 0 Clostridium tetani 1 1513 species 3453 species 3254 Clostridium saccharoperbutylacetonicum 1 36745 0 Clostridium kluyveri 1534 1 0 species 6515 species 2074 Clostridium tyrobutyricum 1 1519 0 2597 species 0 1 238834 Clostridium estertheticum 1518 1 6755115 family 0 13 541000 Ruminococcaceae 0 1 2305133 47408 no rank species 47408 Ruminococcaceae bacterium CPB6 1 1572656 0 1 67 genus 41123 0 Ethanoligenens 253238 2 Ethanoligenens harbinense 253239 1 0 species 41056 0 Ruminococcus 3 1263 1 467 genus 106218 1 1160721 Ruminococcus bicirculans 0 73452 species 0 1 1264 Ruminococcus albus 32299 species 0 Faecalibacterium 2 216851 1 3423 genus 6338037 6334614 species 0 853 1 Faecalibacterium prausnitzii 18965 no rank 552397 1 0 species 18965 [Clostridium] cellulosi 1 29343 0 0 946234 2 Flavonifractor 434 1 201836 genus species 201402 Flavonifractor plautii 1 292800 0 0 1890281 1 Herbivorax 10 genus Peptostreptococcaceae 186804 12 0 family 277855 1 1539 1 8 genus 5252 0 Peptoclostridium 2 1481960 1 1731 Peptoclostridium acidaminophilum 0 5244 species 0 Acetoanaerobium 186831 2 1 3 genus 2117 species 2114 Acetoanaerobium sticklandii 1 1511 0 6 1 8695 genus 0 44259 2 Filifactor 8689 species 1 143361 Filifactor alocis 0 0 Paeniclostridium 1849828 2 1 2 genus 3057 0 Paeniclostridium sordellii 1505 1 species 3055 0 2 1870884 Clostridioides 620 1 253334 genus 0 Clostridioides difficile 1 1496 species 252714 0 1411023 1 3861 no rank 3861 species 0 1 2081703 Peptostreptococcaceae bacterium oral taxon 929 74928 family 377 1 29 186807 Peptococcaceae 0 4 56112 Dehalobacter 0 13514 genus 114 1 no rank 9449 0 2635733 2 0 1131462 1 Dehalobacter sp. CF 5002 species 4447 species 0 1 1147129 Dehalobacter sp. DCA 0 Dehalobacter restrictus 1 55583 species 3951 genus 3057 1 7 Candidatus Desulforudis 471826 2 0 species 3050 0 Candidatus Desulforudis audaxviator 1 471827 genus 2197 0 2282742 1 species 2197 Desulfotomaculum acetoxidans 1 58138 0 2282740 1 0 3793 genus 0 102134 1 Desulfotomaculum gibsoniae 3793 species 540 1 14775 genus 0 5 1562 Desulfotomaculum species 5992 0 Desulfotomaculum ruminis 1 1564 species 2762 0 Desulfotomaculum reducens 1 59610 2571 species 0 1833852 1 Desulfotomaculum ferrireducens 2910 species 1565 1 Desulfotomaculum nigrificans 0 genus 15331 1 138 Desulfitobacterium 36853 5 0 Desulfitobacterium dichloroeliminans 1 233055 0 species 2819 species 6409 0 Desulfitobacterium hafniense 49338 1 0 1 36854 Desulfitobacterium dehalogenans 3694 species Desulfitobacterium metallireducens 142877 1 0 species 2271 6 1 3103 genus 0 278993 2 Thermincola 3097 species 1 863643 Thermincola potens 0 0 Dehalobacterium 2 51514 1 2 genus 6606 0 Dehalobacterium formicoaceticum 51515 1 species 6604 0 51196 2 Syntrophobotulus 6 1 3364 genus species 3358 Syntrophobotulus glycolicus 1 51197 0 0 79206 4 Desulfosporosinus 502 1 8811 genus 3205 species 0 1 79209 Desulfosporosinus meridiei species 2538 Desulfosporosinus orientis 1563 1 0 2566 species 0 885581 1 Desulfosporosinus acidiphilus 73458 family 16 1 3 216572 Oscillospiraceae 0 1 97 genus 73442 0 Oscillibacter 459786 2 1 351091 Oscillibacter valericigenes 0 73345 species 49384 family 44 1 186806 5 Eubacteriaceae 0 Eubacterium 1730 2 0 genus 46539 1 1406 0 Eubacterium limosum 1736 1 species 45133 1 16 genus 2801 0 Acetobacterium 33951 2 Acetobacterium woodii 33952 1 0 species 2785 0 990719 3 Christensenellaceae 72 1 101352 family 2622 1 101280 genus 0 2 990721 Christensenella Christensenella massiliensis 1805714 1 0 species 98658 68298 5 Syntrophomonadaceae 0 2782 family 3 1 Syntrophomonas 2 862 0 genus 1480 1 1 0 863 1 Syntrophomonas wolfei 1479 species 1 2 genus 1299 0 Syntrophothermus 2 129001 Syntrophothermus lipocalidus 86170 1 0 species 1297 0 543349 3 Symbiobacteriaceae 43 1 9331 family 0 2 2733 Symbiobacterium 97 1 9288 genus 9191 species 1 2734 Symbiobacterium thermophilum 0 0 2304686 12 121728 family genus 6714 1 2 Mageeibacillus 2 1637257 0 6712 species 0 884684 1 Mageeibacillus indolicus 6653 genus 2304691 1 0 species 6653 0 [Clostridium] stercorarium 1 1510 no rank 77182 0 1 2305130 0 Ruminiclostridium sp. KB18 1834198 1 species 77182 15 1 1447 genus 0 2 236752 Fastidiosipila 236753 1 Fastidiosipila sanguinis 0 1432 species 5713 genus 2304693 1 0 0 [Clostridium] thermosuccinogenes 1 84032 species 5713 genus 14003 3 2304692 0 Ruminiclostridium thermocellum 1515 1 0 species 5422 Herbivorax saccincola 1 1677857 0 species 3531 5050 species 0 288965 1 [Clostridium] clariflavum 1 1681 genus 10016 0 Ruminiclostridium 2 1508657 0 [Clostridium] cellulolyticum 1521 1 species 8335 10 538999 0 372064 no rank genus 174862 1 2852 Intestinimonas 1392389 2 0 1297617 1 Intestinimonas butyriciproducens 0 172010 species 0 2717089 1 180041 genus species 180041 Mordavella sp. Marseille-P3756 1 2086584 0 14 1 11322 family 0 4 543314 Clostridiales Family XIII. Incertae Sedis genus 5137 1 3 Mogibacterium 86331 2 0 114527 1 Mogibacterium diversum 0 5134 species 1 143393 [Eubacterium] sulci 0 6171 species 34 1 5839 family 0 3 539000 Clostridiales Family XVII. Incertae Sedis 1 22 genus 5805 0 Thermaerobacter 73918 2 Thermaerobacter marianensis 73919 1 0 species 5783 3450146 family 5709 1 27 186803 Lachnospiraceae 0 0 3 830 Butyrivibrio 57 1 23582 genus Butyrivibrio hungatei 185008 1 0 species 10945 12580 species 0 43305 1 Butyrivibrio proteoclasticus 2569097 1 0 203583 genus 203583 species 1 39488 [Eubacterium] hallii 0 1 1444 genus 318399 0 Lachnoclostridium 4 1506553 1 1871021 Lachnoclostridium phocaeense 0 212819 species species 9379 0 Lachnoclostridium phytofermentans 66219 1 94757 no rank 2608895 1 0 Lachnoclostridium sp. YL32 1 1834196 0 species 94757 0 2 186928 no rank 259595 species 202398 [Eubacterium] rectale 1 39491 0 0 712991 1 Lachnospiraceae bacterium oral taxon 500 57197 species 1 71 genus 1019121 0 Roseburia 2 841 species 1019050 Roseburia hominis 1 301301 0 Herbinix 2 1663717 0 genus 8183 1 6 0 Herbinix luporum 1679721 1 species 8177 1 387 genus 159594 0 Anaerostipes 2 207244 159207 species 0 649756 1 Anaerostipes hadrus 110082 genus 0 1 2719231 110082 species 0 1 84030 [Clostridium] saccharolyticum Cellulosilyticum 2 698776 0 genus 4888 1 2 0 1 29360 Cellulosilyticum lentocellum 4886 species 0 1 28050 genus 471934 species 471934 [Eubacterium] eligens 39485 1 0 1 2719313 0 602319 genus 0 [Clostridium] bolteae 1 208479 species 602319 572511 3 Blautia 0 256423 genus 184 1 59546 no rank 1 2648079 0 59546 species 1796616 1 Blautia sp. YL58 0 0 1 1322 Blautia hansenii 196693 species 9 1 6734 genus 0 2039240 2 Anaerotignum species 6725 Anaerotignum propionicum 1 28446 0 33974 2 0 no rank 5144 Ndongobacter 2 1930845 0 genus 5144 1 53 1871025 1 Ndongobacter massiliensis 0 5091 species 0 11 526524 Erysipelotrichia 12 1 60344 class order 60332 1 110 Erysipelotrichales 10 526525 0 60222 family 821 1 9 128827 Erysipelotrichaceae 0 genus 2585 1 15 Erysipelothrix 3 1647 0 1292 species 1514105 1 Erysipelothrix larvae 0 1648 1 Erysipelothrix rhusiopathiae 0 1278 species 0 544447 1 23631 no rank 23631 species 1 1834207 Erysipelotrichaceae bacterium I46 0 genus 20512 1 52 Faecalibaculum 1729679 2 0 20460 species 0 1702221 1 Faecalibaculum rodentium Turicibacter 2 191303 0 genus 12673 1 255 no rank 12418 0 2638206 1 species 12418 0 Turicibacter sp. H121 1 1712675 1178 no rank 0 1 84086 1178 species 0 1 243899 endosymbiont 'TC1' of Trimyema compressum 137108 class 1737404 18 0 no rank 1533 1737407 2 0 genus 1533 1 11 Ezakiella 1582879 2 0 species 1522 0 Ezakiella massiliensis 1852374 1 330 1 135575 order 0 16 1737405 Tissierellales Gottschalkiaceae 3 2042895 0 family 1308 1 2 genus 1306 1 3 Gottschalkia 1505664 2 0 1 1556 Gottschalkia acidurici 0 1303 species family 133937 1 17419 Peptoniphilaceae 12 1570339 0 2483 genus 1 1 162289 2 Peptoniphilus 0 2637196 1 0 2482 no rank 2482 species 0 1 1912856 Peptoniphilus sp. ING2-D1G 1 29 genus 23150 0 Murdochiella 2 1161127 0 1852373 1 Murdochiella vaginalis 23121 species 0 Finegoldia 150022 2 1 10 genus 1873 1863 species 1 1260 Finegoldia magna 0 genus 85602 1 18 Parvimonas 2 543311 0 33033 1 Parvimonas micra 0 85584 species 12 1 3410 genus 0 3 165779 Anaerococcus 0 1870984 1 Anaerococcus mediterraneensis 1689 species 1709 species 0 33034 1 Anaerococcus prevotii 4258 class 25 1 1676648 5 Limnochordia 0 4233 order 106 1 4 1676649 Limnochordales 0 0 Limnochordaceae 3 1676650 1 34 family 4127 4093 genus 57 1 2 1676651 Limnochorda 0 0 1 1555112 Limnochorda pilosa 4036 species 0 Bacilli 428 91061 1 680 class 925457 0 Lactobacillales 186826 164 1 6172 order 479899 1300 49 Streptococcaceae 0 275694 family 2451 1 1 12377 genus 267524 0 Streptococcus 43 1301 5004 species group 119603 2 0 1 1334 Streptococcus dysgalactiae 0 1305 species species 3699 Streptococcus equi 1336 1 0 species 1701 0 Streptococcus sanguinis 1305 1 species 4879 Streptococcus pyogenes 1314 1 0 1417 species 0 1 1309 Streptococcus mutans 1348 1 Streptococcus parauberis 0 1409 species 1811193 1 Streptococcus pantholopis 0 1885 species 1833 species 1 45634 Streptococcus cristatus 0 1 1326 Streptococcus acidominimus 0 1725 species 0 197614 1 Streptococcus pasteurianus 4687 species 0 Streptococcus himalayensis 1888195 1 species 732 495 species 0 1814128 1 Streptococcus halotolerans 2775 species 1 1335 Streptococcus equinus 0 0 1 400065 Streptococcus merionis 582 species species 6877 Streptococcus parasanguinis 1318 1 0 Streptococcus lutetiensis 1 150055 0 species 5139 315405 1 Streptococcus gallolyticus 0 2057 species 0 82348 1 Streptococcus pluranimalium 784 species 1 1308 Streptococcus thermophilus 0 2319 species 0 Streptococcus mitis 1 28037 species 3877 0 Streptococcus agalactiae 1 1311 species 12969 3981 species 1 1346 Streptococcus iniae 0 species 945 0 Streptococcus uberis 1 1349 Streptococcus marmotae 1 1825069 0 species 627 0 1 1304 Streptococcus salivarius 17685 species species 34130 Streptococcus suis 1307 1 0 2446 species 1303 1 Streptococcus oralis 0 Streptococcus pseudopneumoniae 257758 1 0 species 724 7 2608887 0 17944 no rank 0 Streptococcus sp. FDAARGOS_192 1 1839799 species 4901 2375 species 0 1759399 1 Streptococcus sp. A12 species 917 Streptococcus sp. NPS 308 1902136 1 0 species 501 0 Streptococcus sp. 'group B' 1 1319 0 Streptococcus sp. oral taxon 431 712633 1 species 979 Streptococcus sp. I-G2 1 1156431 0 species 4044 species 4227 0 Streptococcus sp. I-P16 1 1156433 Streptococcus infantarius 102684 1 0 species 4861 species 2714 0 Streptococcus pneumoniae 1 1313 Streptococcus gordonii 1 1302 0 species 2533 1224 species 0 59310 1 Streptococcus macedonicus 0 3 671232 species group 102187 0 Streptococcus constellatus 1 76860 species 45939 3890 species 1338 1 Streptococcus intermedius 0 species 52358 Streptococcus anginosus 1328 1 0 1357 5 Lactococcus 0 5719 genus 12 1 0 1363 1 Lactococcus garvieae 991 species Lactococcus lactis 1358 1 0 species 3570 Lactococcus piscium 1 1364 0 species 559 587 species 1 1366 Lactococcus raffinolactis 0 87741 family 92 1 81852 19 Enterococcaceae 0 Enterococcus 12 1350 0 genus 84638 1 7826 species 14413 Enterococcus faecalis 1351 1 0 0 Enterococcus durans 53345 1 species 2345 species 2467 Enterococcus thailandicus 417368 1 0 1 1352 Enterococcus faecium 0 45001 species 3 2608891 0 4268 no rank Enterococcus sp. FDAARGOS_375 1 2060307 0 species 2084 1039 species 1 2057791 Enterococcus sp. CR-Ec1 0 1145 species 0 2060306 1 Enterococcus sp. FDAARGOS_163 1 53346 Enterococcus mundtii 0 1643 species 0 Enterococcus hirae 1 1354 species 3949 1796 species 1 2005703 Enterococcus wangshanyuanii 0 species 930 0 Enterococcus casseliflavus 1 37734 0 1 33969 502 genus 0 Melissococcus plutonius 33970 1 species 502 51668 2 Tetragenococcus 0 1453 genus 5 1 0 1 51669 Tetragenococcus halophilus 1448 species 11 1 1056 genus 0 3 2737 Vagococcus Vagococcus penaei 633807 1 0 species 543 0 Vagococcus teuberi 519472 1 species 502 416 no rank 0 263855 1 species 416 0 Lactobacillales bacterium 1 1993866 Carnobacteriaceae 11 186828 0 family 6118 1 1 0 5 2747 Carnobacterium 41 1 3875 genus species 1264 Carnobacterium maltaromaticum 2751 1 0 2 257487 0 1921 no rank 944 species 0 1564681 1 Carnobacterium sp. CP1 0 208596 1 Carnobacterium sp. 17-4 977 species Carnobacterium inhibens 1 147709 0 species 649 1 8 genus 1313 0 Jeotgalibaca 3 1470540 1 2621505 0 no rank 931 0 1 1903686 Jeotgalibaca sp. PTS2502 931 species 374 species 0 1 708126 Jeotgalibaca dankookensis Marinilactibacillus 191769 2 0 genus 929 1 6 923 no rank 0 1 2632303 1911586 1 Marinilactibacillus sp. 15R 0 923 species family 8032 1 147 Leuconostocaceae 81850 17 0 1 35 genus 4671 0 Leuconostoc 1243 9 Leuconostoc carnosum 1 1252 0 species 609 species 582 0 Leuconostoc citreum 33964 1 Leuconostoc lactis 1246 1 0 species 690 583 species 0 1244 1 Leuconostoc gelidum 0 Leuconostoc mesenteroides 1 1245 species 1005 1 2685106 0 300 no rank 0 Leuconostoc sp. C2 1 979982 species 300 Leuconostoc kimchii 1 136609 0 species 394 Leuconostoc garlicum 255248 1 0 species 473 46254 1 0 genus 619 Oenococcus oeni 1 1247 0 species 619 6 46255 Weissella 0 2595 genus 13 1 species 310 0 Weissella ceti 759620 1 species 647 Weissella koreensis 165096 1 0 788 species 1 137591 Weissella cibaria 0 0 Weissella paramesenteroides 1249 1 species 328 0 1631871 1 Weissella jogaejeotgali 509 species 17 1 7634 family 0 186827 8 Aerococcaceae 0 Aerococcus 7 1375 1 121 genus 7617 1780 species 0 87541 1 Aerococcus christensenii Aerococcus urinaeequi 1 51665 0 species 860 1 1376 Aerococcus urinae 0 1189 species 0 128944 1 Aerococcus urinaehominis 1077 species species 1507 Aerococcus sanguinicola 1 119206 0 0 1377 1 Aerococcus viridans 1083 species family 88092 1 789 Lactobacillaceae 33958 58 0 2 2767885 0 2145 genus 1450 species 1 1599 Lactobacillus sakei 0 species 695 0 Lactobacillus curvatus 28038 1 3453 genus 3 2767886 0 species 1013 Lactobacillus koreensis 1 637971 0 0 Lactobacillus zymae 267363 1 species 1164 species 1276 Lactobacillus brevis 1580 1 0 genus 3648 2767842 3 0 1807 species 1590 1 Lactobacillus plantarum 0 Lactobacillus pentosus 1 1589 0 species 1019 822 species 0 1 60520 Lactobacillus paraplantarum 0 6 2767879 genus 3810 species 585 Lactobacillus alimentarius 1602 1 0 0 1 1847728 Lactobacillus allii 527 species Lactobacillus ginsenosidimutans 1 1007676 0 species 565 species 832 Lactobacillus farciminis 1 1612 0 1 1074467 Lactobacillus heilongjiangensis 0 571 species species 730 0 Lactobacillus crustorum 392416 1 0 1 2767876 genus 4770 0 Lactobacillus amylophilus 1603 1 species 4770 0 1578 16 Lactobacillus 4709 1 29487 genus species 491 Lactobacillus jensenii 1 109790 0 597 species 1 1600 Lactobacillus acetotolerans 0 0 Lactobacillus delbrueckii 1584 1 species 3887 2726 no rank 2620435 4 0 0 2108362 1 Lactobacillus sp. D1501 697 species species 748 Lactobacillus sp. CBA3606 2099789 1 0 1 1545702 Lactobacillus sp. wkB8 0 682 species 1 2099788 Lactobacillus sp. CBA3605 0 599 species species 2203 Lactobacillus gallinarum 52242 1 0 0 1 1587 Lactobacillus helveticus 953 species 4815 species 1604 1 Lactobacillus amylovorus 0 species 615 0 Lactobacillus kefiranofaciens 267818 1 species 5858 0 Lactobacillus johnsonii 1 33959 0 1596 1 Lactobacillus gasseri 1032 species 740 species 83683 1 Lactobacillus amylolyticus 0 Lactobacillus acidophilus 1579 1 0 species 861 2742598 3 0 genus 5976 species 2296 0 Lactobacillus reuteri 1 1598 Lactobacillus mucosae 97478 1 0 species 1819 1613 1 Lactobacillus fermentum 0 1861 species 1 2767892 0 genus 1357 0 Lactobacillus paracollinoides 240427 1 species 1357 940 genus 0 2767881 2 0 1 1625 Lactobacillus sanfranciscensis 609 species 0 Lactobacillus lindneri 53444 1 species 331 8445 genus 0 2759736 3 0 1597 1 Lactobacillus paracasei 2284 species 2119 species 47715 1 Lactobacillus rhamnosus 0 species 4042 0 Lactobacillus casei 1 1582 0 2767890 1 517 genus 0 1193095 1 Lactobacillus hokkaidonensis 517 species genus 14182 2767887 4 0 5195 species 1 1623 Lactobacillus ruminis 0 4598 species 0 1 1601 Lactobacillus agilis Lactobacillus acidipiscis 89059 1 0 species 937 1 1624 Lactobacillus salivarius 0 3452 species 0 2 2767889 1768 genus species 1002 0 Lactobacillus coryniformis 1610 1 0 1 375175 Lactobacillus backii 766 species 1 10 genus 4398 0 Pediococcus 6 1253 524 species 1 51663 Pediococcus damnosus 0 2041 species group 0 1670797 1 Pediococcus acidilactici 1254 1 0 species 2041 0 187452 1 Pediococcus claussenii 411 species 0 114090 1 Pediococcus inopinatus 555 species species 857 Pediococcus pentosaceus 1 1255 0 2767893 3 0 2073 genus Lactobacillus parabuchneri 1 152331 0 species 589 764 species 0 1138822 1 Lactobacillus curieae 0 Lactobacillus buchneri 1581 1 species 720 2767877 1 0 genus 334 Lactobacillus kunkeei 148814 1 0 species 334 444878 order 1323 1 263 1385 Bacillales 0 5612 1 40392 family 0 90964 42 Staphylococcaceae genus 2741 1 13 Macrococcus 4 69965 0 species 1553 Macrococcus caseolyticus 69966 1 0 535 no rank 2619255 1 0 0 1 1898474 Macrococcus sp. IME1552 535 species 1855823 1 Macrococcus canis 0 640 species 2005363 2 Auricoccucs 0 528 genus 72 1 species 456 0 Auricoccus indicus 1849491 1 2024 1 29874 genus 0 1279 33 Staphylococcus 643214 1 Staphylococcus stepanovicii 0 598 species 1 45972 Staphylococcus pasteuri 0 1079 species species 694 0 Staphylococcus succinus 1 61015 1 985002 Staphylococcus argenteus 0 535 species 1 1280 Staphylococcus aureus 0 4327 species 0 1 246432 Staphylococcus equorum 923 species 1 46127 Staphylococcus felis 0 586 species 1274 species 0 1288 1 Staphylococcus xylosus 1 70258 Staphylococcus piscifermentans 0 859 species Staphylococcus hominis 1290 1 0 species 690 species 500 0 Staphylococcus schleiferi 1 1295 1284 1 Staphylococcus hyicus 0 533 species 650 species 1 29388 Staphylococcus capitis 0 species 610 Staphylococcus sciuri 1296 1 0 641 species 29385 1 Staphylococcus saprophyticus 0 1283 1 Staphylococcus haemolyticus 0 597 species 617 species 0 308354 1 Staphylococcus simiae 70255 1 Staphylococcus condimenti 0 956 species 605 species 1 985762 Staphylococcus agnetis 0 0 1 91994 772 no rank Staphylococcus sp. AntiMn-1 1715860 1 0 species 772 Staphylococcus simulans 1286 1 0 species 676 0 1 155085 Staphylococcus lutrae 484 species 1 170573 Staphylococcus pettenkoferi 0 432 species Staphylococcus warneri 1 1292 0 species 659 670 species 1 28035 Staphylococcus lugdunensis 0 0 Staphylococcus kloosii 1 29384 species 504 0 Staphylococcus nepalensis 1 214473 species 592 0 29382 1 Staphylococcus cohnii 512 species 0 1282 1 Staphylococcus epidermidis 910 species 0 1 283734 Staphylococcus pseudintermedius 3168 species 0 Staphylococcus muscae 1 1294 species 300 species 897 Staphylococcus carnosus 1281 1 0 45669 2 Salinicoccus 0 1637 genus 66 1 0 1 407035 Salinicoccus halodurans 1571 species 0 9 186823 Alicyclobacillaceae 59 1 17163 family Kyrpidia 1129704 3 0 genus 3554 1 113 species 1893 Kyrpidia sp. EA-1 1 2055160 0 1548 species 33943 1 Kyrpidia tusciae 0 0 2 29330 Alicyclobacillus 168 1 4888 genus Alicyclobacillus acidocaldarius 1 405212 0 species 4720 432330 3 Tumebacillus 0 8662 genus 54 1 1214604 1 Tumebacillus algifaecis 0 3239 species species 5369 Tumebacillus avium 1903704 1 0 1 1 2075 family 0 2 186821 Sporolactobacillaceae 1 663587 0 no rank 2074 species 2074 0 [Bacillus] selenitireducens 85683 1 1 6 family 2807 0 Thermoactinomycetaceae 186824 4 0 Novibacillus 2 1677050 1 53 genus 2796 Novibacillus thermophilus 1 1471761 0 species 2743 0 Laceyella 292635 1 genus 5 0 46 186822 Paenibacillaceae 521 1 171153 family Thermobacillus 76632 2 0 genus 7305 1 10 Thermobacillus composti 377615 1 0 species 7295 0 36 44249 Paenibacillus 1451 1 152186 genus 2139 species 0 1464 1 Paenibacillus larvae species 3256 0 Paenibacillus kribbensis 1 172713 species 1801 Paenibacillus odorifer 1 189426 0 Paenibacillus crassostreae 1 1763538 0 species 1068 species 2788 Paenibacillus terrae 1 159743 0 7085 species 44251 1 Paenibacillus durus 0 species 4160 Paenibacillus beijingensis 1 1126833 0 185978 13 0 no rank 51148 1 2069255 Paenibacillus sp. lzh-N1 0 2104 species species 1444 Paenibacillus sp. FSL H7-0737 1536775 1 0 1536769 1 Paenibacillus sp. FSL P4-0081 0 5607 species species 3909 0 Paenibacillus sp. Y412MC10 481743 1 3483 species 324057 1 Paenibacillus sp. JDR-2 0 0 Paenibacillus sp. FSL R7-0331 1536773 1 species 6066 0 Paenibacillus sp. FSL R5-0345 1536770 1 species 1912 Paenibacillus sp. FSL R5-0912 1536771 1 0 species 6290 0 1 1536772 Paenibacillus sp. FSL R7-0273 6042 species 1073 species 1566358 1 Paenibacillus sp. IHBB 10380 0 0 1695218 1 Paenibacillus sp. 32O-W 4598 species species 4942 0 Paenibacillus sp. FSL H7-0357 1536774 1 0 1 1870819 Paenibacillus sp. BIHB4019 3678 species 2050 species 0 1 59893 Paenibacillus peoriae 0 160799 1 Paenibacillus borealis 6521 species Paenibacillus donghaensis 414771 1 0 species 6929 Paenibacillus stellifer 1 169760 0 species 7218 1462996 1 Paenibacillus yonginensis 0 6718 species 0 1 365617 Paenibacillus sabinae 4653 species species 1926 Paenibacillus xylanexedens 528191 1 0 Paenibacillus bovis 1616788 1 0 species 3506 0 1 162209 Paenibacillus naphthalenovorans 2725 species 2044880 1 0 species group 6030 0 1 483937 Paenibacillus riograndensis 6030 species 5100 species 1 1870820 Paenibacillus ihbetae 0 0 61624 1 Paenibacillus mucilaginosus 8745 species 2567 species 1 1178515 Paenibacillus swuensis 0 species 6964 Paenibacillus polymyxa 1 1406 0 5638 species 1 189425 Paenibacillus graminis 0 44 1 6782 genus 0 4 55080 Brevibacillus 0 Brevibacillus laterosporus 1465 1 species 2391 species 1878 Brevibacillus formosus 54913 1 0 2469 species 0 1 1393 Brevibacillus brevis no rank 4359 0 85151 3 5 1 4359 genus 0 55079 3 Aneurinibacillus 1 2642329 0 no rank 2031 2031 species 0 1450761 1 Aneurinibacillus sp. XH2 species 2323 Aneurinibacillus soli 1 1500254 0 family 171211 1 1230 Bacillaceae 186817 117 0 genus 1714 0 459532 1 1 586416 Terribacillus aidingensis 0 1714 species 6691 genus 183 1 84406 7 Virgibacillus 0 0 Virgibacillus necropolis 163877 1 species 1415 801 species 0 1473 1 Virgibacillus pantothenticus no rank 1795 0 2620237 2 1911587 1 Virgibacillus sp. 6R 0 1127 species species 668 0 Virgibacillus sp. SK37 403957 1 1049 species 0 1482 1 Virgibacillus halodenitrificans 1 2017483 Virgibacillus phasianinus 0 1448 species 1872 genus 1 1 2 175304 Lentibacillus 0 species 1871 0 Lentibacillus amyloliquefaciens 1 1472767 0 3 45667 Halobacillus 19 1 2725 genus species 1367 0 Halobacillus halophilus 1570 1 0 Halobacillus mangrovi 402384 1 species 1339 Bacillus 1386 58 0 genus 104109 1 7279 0 Bacillus megaterium 1 1404 species 2958 19 185979 0 no rank 15684 Bacillus sp. 1NLA3E 666686 1 0 species 1782 1081 species 0 1 1837130 Bacillus sp. FJAT-14266 1409 1 Bacillus sp. (in: Bacteria) 0 274 species 0 1 2049935 Bacillus sp. Lzh-5 168 species species 1205 Bacillus sp. OxB-1 1 98228 0 Bacillus sp. 1s-1 1 2026248 0 species 1454 0 Bacillus sp. MD-5 1 2009331 species 471 species 264 Bacillus sp. BH072 1570330 1 0 1138 species 1827146 1 Bacillus sp. IHB B 7164 0 0 1565991 1 Bacillus sp. X1(2014) 1374 species 0 1941347 1 Bacillus sp. 275 475 species Bacillus sp. H15-1 1856406 1 0 species 1455 species 940 0 Bacillus sp. WP8 1 756828 0 Bacillus sp. YP1 1574141 1 species 419 1 1446792 Bacillus sp. Pc3 0 604 species 0 1 1628753 Bacillus sp. LM 4-2 268 species 510 species 1 1127744 Bacillus sp. JS 0 species 1350 Bacillus sp. SDLI1 1 1774743 0 452 species 1 563169 Bacillus sp. SJ-10 0 1 1178537 Bacillus xiamenensis 0 960 species 0 653685 9 23698 species group 2074 species 119858 1 Bacillus sonorensis 0 7274 species subgroup 1938374 3 0 0 1 492670 Bacillus velezensis 2715 species species 3221 Bacillus amyloliquefaciens 1 1390 0 1338 species 0 659243 1 Bacillus siamensis species 8475 0 Bacillus subtilis 1 1423 0 1452 1 Bacillus atrophaeus 1985 species Bacillus paralicheniformis 1648923 1 0 species 1482 species 443 Bacillus vallismortis 1 72361 0 1 1402 Bacillus licheniformis 0 1965 species Bacillus glycinifermentans 1 1664069 0 species 2728 species 965 Bacillus cellulosilyticus 1 1413 0 species 1302 Bacillus endophyticus 135735 1 0 0 Bacillus aryabhattai 412384 1 species 1401 Bacillus smithii 1 1479 0 species 1021 930 species 0 1547283 1 Bacillus weihaiensis 86661 10 0 24937 species group 0 Bacillus toyonensis 1 155322 species 846 580165 1 Bacillus cytotoxicus 0 1014 species 1405 1 Bacillus mycoides 0 3142 species 7516 species 0 1 1396 Bacillus cereus 0 3 2750818 no rank 3672 Bacillus sp. ABP14 1 1892404 0 species 744 species 1661 0 Bacillus sp. HBCD-sjtu 2053832 1 1267 species 0 1839798 1 Bacillus sp. FDAARGOS_235 1 1392 Bacillus anthracis 0 1240 species 535 species 0 1 658666 Bacillus bombysepticus Bacillus thuringiensis 1428 1 0 species 6972 1152 species group 0 1 1792192 0 Bacillus altitudinis 1 293387 species 1152 1398 1 Bacillus coagulans 0 4439 species Bacillus horikoshii 79883 1 0 species 922 species 4384 0 Bacillus pumilus 1408 1 632773 1 Bacillus beveridgei 0 1493 species 0 Bacillus cohnii 1 33932 species 1123 0 Bacillus safensis 561879 1 species 1971 739 species 1 86664 Bacillus flexus 0 species 2410 0 Bacillus infantis 1 324767 species 1453 Bacillus methanolicus 1 1471 0 0 Bacillus gibsonii 1 79881 species 160 0 351195 1 genus 945 species 945 0 Salimicrobium jeotgali 1230341 1 400634 5 Lysinibacillus 0 7277 genus 54 1 1 1421 Lysinibacillus sphaericus 0 3264 species no rank 1711 1 2636778 0 species 1711 0 Lysinibacillus sp. YS11 1 2072025 0 Lysinibacillus fusiformis 28031 1 species 1175 0 Lysinibacillus varians 1145276 1 species 1073 0 1 29331 1610 genus species 1610 0 Amphibacillus xylanus 1449 1 1 2 genus 1852 0 Oceanobacillus 182709 2 0 Oceanobacillus iheyensis 182710 1 species 1850 genus 945 1055323 1 0 0 Aeribacillus pallidus 1 33936 species 945 27 1 2083 genus 0 3 1329200 Fictibacillus 661 species 0 1 1221500 Fictibacillus phosphorivorans species 1395 0 Fictibacillus arsenicus 255247 1 1 1194 genus 17665 0 Geobacillus 15 129337 Geobacillus thermodenitrificans 33940 1 0 species 1860 species 1489 Geobacillus subterraneus 1 129338 0 0 4 1505648 species group 5608 species 1528 0 Geobacillus lituanicus 169283 1 0 Geobacillus thermoleovorans 1 33941 species 2246 595 species 0 1 1462 Geobacillus kaustophilus 1239 species 33938 1 Geobacillus thermocatenulatus 0 1680 species 0 1 1422 Geobacillus stearothermophilus 4389 no rank 6 2642459 0 570 species 0 1 691437 Geobacillus sp. C56-T3 581103 1 Geobacillus sp. Y4.1MC1 0 1382 species 0 544556 1 Geobacillus sp. Y412MC61 417 species 471223 1 Geobacillus sp. WCH70 0 1137 species Geobacillus sp. GHH01 1233873 1 0 species 436 447 species 550542 1 Geobacillus sp. Y412MC52 0 1445 species 1 1921421 Geobacillus genomosp. 3 0 150247 6 Anoxybacillus 0 5493 genus 51 1 0 1 33934 Anoxybacillus flavithermus 1359 species 2383 no rank 2639704 2 0 0 Anoxybacillus sp. B2M1 1 1490052 species 1144 0 Anoxybacillus sp. B7M1 1 1490057 species 1239 748 species 0 1 198467 Anoxybacillus gonensis 294699 1 Anoxybacillus amylolyticus 0 952 species 0 5 2675234 genus 7553 Bacillus halodurans 86665 1 0 species 2004 species 1097 Bacillus pseudofirmus 1 79885 0 0 199441 1 Bacillus krulwichiae 864 species 1065 species 1 300825 Bacillus lehensis 0 0 Bacillus clausii 79880 1 species 2523 0 2675230 2 2541 genus species 945 0 Bacillus kochii 1 859143 0 Bacillus oceanisediminis 665099 1 species 1596 3234 genus 2675229 2 0 species 2200 0 Bacillus simplex 1478 1 species 1034 Bacillus muralis 264697 1 0 2 1906945 Parageobacillus 0 1672 genus 1 1 0 1426 1 Parageobacillus thermoglucosidasius 1671 species 8 539002 0 no rank 7023 4690 no rank 539742 7 0 0 7 33986 Exiguobacterium 83 1 4690 genus 2785 no rank 0 2644629 4 species 567 Exiguobacterium sp. MH3 1 1399115 0 species 644 0 Exiguobacterium sp. ZWU0009 1224749 1 360911 1 Exiguobacterium sp. AT1b 0 997 species 0 Exiguobacterium sp. U13-1 1849031 1 species 577 Exiguobacterium sibiricum 332410 1 0 species 891 0 132920 1 Exiguobacterium antarcticum 931 species 0 539738 1 no rank 2333 2333 genus 0 1378 1 2333 no rank 2624949 1 0 1 1785995 Gemella sp. oral taxon 928 0 2333 species 0 Listeriaceae 186820 9 1 5 family 7247 1 1 genus 690 0 Brochothrix 2 2755 0 2756 1 Brochothrix thermosphacta 689 species genus 6552 1 50 Listeria 1637 6 0 1026 species 0 1643 1 Listeria welshimeri 814 species 1 1640 Listeria seeligeri 0 0 1 1642 Listeria innocua 730 species species 1249 Listeria ivanovii 1 1638 0 species 2683 Listeria monocytogenes 1639 1 0 120 1 24484 family 0 186818 25 Planococcaceae 1 17 genus 2465 0 Solibacillus 3 648800 no rank 959 0 2637870 1 1 2048654 Solibacillus sp. R5-41 0 959 species 0 Solibacillus silvestris 1 76853 species 1489 1 1649 0 882 genus 2644826 1 0 no rank 882 1750719 1 Kurthia sp. 11kri321 0 882 species 12066 genus 130 1 1372 12 Planococcus 0 Planococcus kocurii 1374 1 0 species 730 no rank 2086 2 2662419 0 456 species 1526927 1 Planococcus sp. PAMC 21323 0 1630 species 1 2058136 Planococcus sp. MB-3u-03 0 0 1302659 1 Planococcus sp. L10.15 622 species 0 Planococcus halocryophilus 1215089 1 species 762 1 200991 Planococcus rifietoensis 0 1264 species 844 species 161360 1 Planococcus antarcticus 0 3042 species 1 192421 Planococcus maritimus 0 species 1183 0 Planococcus plakortidis 1038856 1 Planococcus donghaensis 1 414778 0 species 678 725 species 0 1 1598147 Planococcus faecalis 1 1 1718 genus 0 157226 2 Jeotgalibacillus Jeotgalibacillus malaysiensis 1508404 1 0 species 1717 96 1 6184 genus 0 1569 5 Sporosarcina 0 Sporosarcina psychrophila 1 1476 species 783 3204 species 1571 1 Sporosarcina ureae 0 0 2647733 2 2101 no rank 859 species 0 1 1930546 Sporosarcina sp. P37 1242 species 0 1930764 1 Sporosarcina sp. P33 0 648802 1 1049 genus 1049 species 0 1 241244 Rummeliibacillus stabekisii 182146 class 232 1 31 909932 Negativicutes 0 0 1843489 11 Veillonellales 725 1 40680 order 31977 10 Veillonellaceae 0 39955 family 1172 1 1 21 genus 2890 0 Negativicoccus 2 909928 2869 species 1 1702287 Negativicoccus massiliensis 0 1 63 genus 8618 0 Veillonella 29465 3 4893 species 0 1 29466 Veillonella parvula 0 Veillonella rodentium 1 248315 species 3662 212 1 7197 genus 0 2 39948 Dialister species 6985 0 Dialister pneumosintes 39950 1 Megasphaera 906 2 0 genus 20078 1 592 0 907 1 Megasphaera elsdenii 19486 species 1 245 order 58091 0 Selenomonadales 14 909929 1 653 family 50483 0 Selenomonadaceae 9 1843491 1 3 genus 3590 0 Megamonas 2 158846 0 1 158847 Megamonas hypermegale 3587 species 0 6 970 Selenomonas 448 1 46240 genus 0 3 2637378 no rank 20317 6145 species 1 1884263 Selenomonas sp. oral taxon 920 0 species 7732 0 Selenomonas sp. oral taxon 136 713030 1 Selenomonas sp. oral taxon 478 712538 1 0 species 6440 0 Selenomonas sputigena 1 69823 species 9705 971 1 Selenomonas ruminantium 0 15770 species family 7363 1 7 Sporomusaceae 1843490 4 0 365348 3 Pelosinus 0 7356 genus 104 1 1 2629460 0 3335 no rank species 3335 Pelosinus sp. UFO1 1 484770 0 Pelosinus fermentans 1 365349 0 species 3917 323 1 83143 order 0 1843488 5 Acidaminococcales Acidaminococcaceae 909930 4 0 family 82820 1 145 0 Acidaminococcus 3 904 1 376 genus 82675 0 Acidaminococcus intestini 1 187327 species 57008 25291 species 1 905 Acidaminococcus fermentans 0 0 Actinobacteria 201174 656 1 125 phylum 2177766 1 18 class 3956 0 Rubrobacteria 6 84995 0 5 84996 Rubrobacterales 140 1 3938 order 0 Rubrobacteraceae 4 84997 1 45 family 3798 0 Rubrobacter 3 42255 1 63 genus 3753 1 49319 Rubrobacter xylanophilus 0 2709 species Rubrobacter radiotolerans 1 42256 0 species 981 no rank 977 4 1752188 0 species 297 Actinobacteria bacterium IMCC25003 1848255 1 0 273 species 0 1 1848756 Actinobacteria bacterium IMCC26103 Actinobacteria bacterium IMCC19121 1 1848754 0 species 220 0 1 1848755 Actinobacteria bacterium IMCC26077 187 species 0 84998 33 Coriobacteriia 813 1 264565 class Coriobacteriales 84999 14 0 order 106447 1 439 0 Atopobiaceae 1643824 7 1 1367 family 38105 genus 34121 1 213 Olsenella 4 133925 0 species 16477 Olsenella sp. Marseille-P2300 1805478 1 0 0 1 2638792 no rank 6384 1 712411 Olsenella sp. oral taxon 807 0 6384 species species 11047 0 Olsenella uli 1 133926 4 genus 1380 1 Atopobium 0 2613 genus 0 1 2767353 species 2613 Atopobium parvulum 1382 1 0 1 5815 family 67903 0 Coriobacteriaceae 84107 6 33870 2 Coriobacterium 0 4446 genus 1 1 Coriobacterium glomerans 1 33871 0 species 4445 0 1 84113 8312 no rank 1531429 1 Coriobacteriaceae bacterium 68-1-3 0 8312 species 1 87 genus 49330 0 Collinsella 102106 2 49243 species 1 74426 Collinsella aerofaciens 0 609 1 157305 order 0 18 1643822 Eggerthellales 156696 family 40572 1 1643826 17 Eggerthellaceae 0 Denitrobacterium 79603 2 0 genus 7277 1 7 0 Denitrobacterium detoxificans 1 79604 species 7270 genus 3093 1 9 Phoenicibacter 2 1981050 0 species 3084 0 Phoenicibacter massiliensis 1 1944646 Eggerthella 3 84111 0 genus 46701 1 311 Eggerthella lenta 1 84112 0 species 37688 0 1 2648737 no rank 8702 0 Eggerthella sp. YY7918 1 502558 species 8702 3 644652 Gordonibacter 0 32850 genus 139 1 0 Gordonibacter massiliensis 1841863 1 species 16765 0 Gordonibacter urolithinfaciens 1 1335613 species 15946 0 2 84162 Cryptobacterium 2 1 1040 genus Cryptobacterium curtum 84163 1 0 species 1038 2 447020 Adlercreutzia 0 14592 genus 20 1 0 Adlercreutzia equolifaciens 1 446660 species 14572 Slackia 84108 2 0 genus 10571 1 36 10535 species 84110 1 Slackia heliotrinireducens 0 Thermoleophilia 1497346 5 0 class 3560 1 18 1 180 order 3542 0 Solirubrobacterales 4 588673 1 23 family 3362 0 Conexibacteraceae 320583 3 1 79 genus 3339 0 Conexibacter 191494 2 3260 species 0 191495 1 Conexibacter woesei Actinobacteria 600 1760 0 class 1902068 1 8120 544 order 1 1 1643683 4 Acidothermales 0 Acidothermaceae 3 85032 0 family 543 1 3 Acidothermus 2 28048 0 genus 540 1 4 Acidothermus cellulolyticus 1 28049 0 species 536 0 85009 34 Propionibacteriales 281 1 57108 order 0 Nocardioidaceae 85015 13 1 928 family 19562 182639 2 Kribbella 0 2940 genus 28 1 species 2912 0 Kribbella flavida 1 182640 1 6 genus 2393 0 Micropruina 116071 2 0 75385 1 Micropruina glycogenica 2387 species 1 162 genus 7993 0 Nocardioides 1839 4 0 Nocardioides dokdonensis 450734 1 species 2579 0 2615069 1 no rank 2782 2782 species 0 1 196162 Nocardioides sp. JS614 2470 species 1 2045452 Nocardioides sp. 78 0 1 11 genus 2778 0 Pimelobacter 2044 2 Pimelobacter simplex 1 2045 0 species 2767 0 Aeromicrobium 2 2040 1 24 genus 2530 2041 1 Aeromicrobium erythreum 0 2506 species 0 20 31957 Propionibacteriaceae 733 1 37265 family 69 1 11589 genus 0 72763 5 Tessaracoccus species 2782 Tessaracoccus flavescens 399497 1 0 0 1332264 1 Tessaracoccus aquimaris 2936 species 1 2635419 0 3471 no rank species 3471 Tessaracoccus sp. T2.5-30 1909732 1 0 species 2331 Tessaracoccus flavus 1 1610493 0 genus 7365 1 184 Propionibacterium 1743 3 0 2608905 1 0 no rank 1169 1169 species 671223 1 Propionibacterium sp. oral taxon 193 0 6012 species 1744 1 Propionibacterium freudenreichii 0 14 1 3733 genus 0 2 203133 Propionimicrobium 3719 no rank 2633994 1 0 0 Propionimicrobium sp. Marseille-P3275 1871034 1 species 3719 1912216 4 Cutibacterium 0 5997 genus 17 1 Cutibacterium granulosum 1 33011 0 species 1334 species 1322 Cutibacterium acnes 1 1747 0 0 1 33010 Cutibacterium avidum 3324 species 2 29404 Microlunatus 0 1771 genus 13 1 0 Microlunatus phosphovorus 1 29405 species 1758 1912215 2 Acidipropionibacterium 0 4366 genus 21 1 species 4345 0 Acidipropionibacterium acidipropionici 1 1748 1711 genus 2801844 1 0 1750 1 Pseudopropionibacterium propionicum 0 1711 species 10433 order 15 1 8 1643682 Geodermatophilales 0 145 1 10418 family 0 85030 7 Geodermatophilaceae 1 35 genus 4225 0 Modestobacter 2 88138 species 4190 Modestobacter marinus 1 477641 0 3466 genus 77 1 1860 2 Geodermatophilus 0 0 1861 1 Geodermatophilus obscurus 3389 species 2582 genus 26 1 2 38501 Blastococcus 0 species 2556 0 Blastococcus saxobsidens 1 138336 1 218 order 33648 0 Streptosporangiales 85012 16 0 Nocardiopsaceae 83676 7 1 210 family 11929 0 83677 2 Thermobifida 11 1 1769 genus 0 1 2021 Thermobifida fusca 1758 species Nocardiopsis 2013 4 0 genus 9950 1 243 3640 species 280236 1 Nocardiopsis gilva 0 Nocardiopsis dassonvillei 1 2014 0 species 3653 2414 species 53437 1 Nocardiopsis alba 0 0 2004 5 Streptosporangiaceae 122 1 15502 family genus 9609 1 62 Nonomuraea 83681 2 0 0 2593643 1 9547 no rank 0 1909395 1 Nonomuraea sp. ATCC 55076 9547 species 0 2 2000 Streptosporangium 58 1 5771 genus Streptosporangium roseum 1 2001 0 species 5713 0 Thermomonosporaceae 2012 3 1 28 family 5999 genus 5971 1 115 Thermomonospora 2019 2 0 Thermomonospora curvata 2020 1 0 species 5856 4 1643684 Nakamurellales 0 3282 order 38 1 0 Nakamurellaceae 3 85031 1 153 family 3244 3091 genus 45 1 2 53460 Nakamurella 0 3046 species 53461 1 Nakamurella multipartita 0 53 1 36888 order 0 20 2037 Actinomycetales 1 2679 family 36835 0 Actinomycetaceae 2049 19 1 14 genus 4860 0 Trueperella 1069494 2 0 1 1661 Trueperella pyogenes 4846 species 9 1654 Actinomyces 0 20793 genus 292 1 2651 species 0 1960083 1 Actinomyces gaoshouyii 0 Actinomyces sp. VUL4_3 1912795 1 species 639 2371 species 1 544580 Actinomyces oris 0 species 2738 0 Actinomyces pacaensis 1 1852377 species 3238 Actinomyces radicidentis 1 111015 0 0 3 2609248 no rank 8864 0 1851395 1 Actinomyces sp. Chiba101 2686 species species 3076 Actinomyces sp. oral taxon 414 1 712122 0 0 2081702 1 Actinomyces sp. oral taxon 897 3102 species 0 Arcanobacterium 2 28263 1 2 genus 553 551 species 28264 1 Arcanobacterium haemolyticum 0 genus 1315 1 8 Actinotignum 1653174 2 0 0 1 59505 Actinotignum schaalii 1307 species 1779 genus 1 2529408 0 0 1 52773 Actinomyces meyeri 1779 species 1 44 genus 4856 0 Mobiluncus 2 2050 4812 species 0 2051 1 Mobiluncus curtisii 1 13 order 5640 0 Catenulisporales 414714 4 3 414877 Catenulisporaceae 0 5627 family 31 1 0 Catenulispora 414878 2 1 57 genus 5596 5539 species 0 1 304895 Catenulispora acidiphila 0 622450 3 2316 order 0 Actinopolysporaceae 3 622451 1 31 family 2316 13 1 2285 genus 0 1849 2 Actinopolyspora 2272 species 0 414996 1 Actinopolyspora erythraea 85011 82 Streptomycetales 0 288741 order 530 1 0 81 2062 Streptomycetaceae 2010 1 288211 family 223 1 17685 genus 0 5 2063 Kitasatospora no rank 4991 2633591 1 0 2018025 1 Kitasatospora sp. MMS16-BH015 0 4991 species Kitasatospora albolonga 1 68173 0 species 3462 3984 species 1894 1 Kitasatospora aureofaciens 0 5025 species 0 2066 1 Kitasatospora setae 1 8226 genus 268516 0 Streptomyces 1883 75 species 4231 Streptomyces autolyticus 75293 1 0 3799 species 0 553510 1 Streptomyces gilvosporeus 0 1 68214 Streptomyces griseochromogenes 3601 species 3073 species 1901 1 Streptomyces clavuligerus 0 3071 species 2049881 1 Streptomyces sp. XZHG99 0 species 3280 0 Streptomyces sp. S10(2016) 1 1783515 species 3264 Streptomyces vietnamensis 1 362257 0 species 2823 0 Streptomyces niveus 193462 1 2554 species 0 285473 1 Streptomyces rubrolavendulae Streptomyces lividans 1916 1 0 species 2815 0 1 1616117 Streptomyces formicae 2961 species 0 Streptomyces lavendulae 1 1914 species 2705 species 4399 Streptomyces xiamenensis 1 408015 0 0 47763 1 Streptomyces lydicus 8930 species species group 6611 1477431 2 0 0 Streptomyces sampsonii 1 42239 species 2957 3654 species 0 1902 1 Streptomyces coelicolor 3441 species 0 1935 1 Streptomyces violaceoruber species 3140 Streptomyces glaucescens 1907 1 0 Streptomyces malaysiensis 92644 1 0 species 3998 Streptomyces lincolnensis 1915 1 0 species 3560 species 3408 Streptomyces collinus 42684 1 0 0 2 629295 species group 5154 0 1 1482596 species subgroup 2891 Streptomyces griseus 1 1911 0 species 2891 2263 species subgroup 1482558 1 0 species 2263 0 Streptomyces globisporus 1908 1 species 2590 0 Streptomyces avermitilis 1 33903 3055 species 1 1969 Streptomyces chartreusis 0 1 1971 Streptomyces noursei 0 3124 species species 3274 0 Streptomyces alfalfae 1642299 1 68192 1 Streptomyces cyaneogriseus 0 3175 species 1 1038928 Streptomyces xinghaiensis 0 2616 species 3385 species 1 146923 Streptomyces parvulus 0 1940 1 Streptomyces albireticuli 0 3476 species species 3203 Streptomyces alboflavus 1 67267 0 Streptomyces hygroscopicus 1 1912 0 species 8085 0 1930 1 Streptomyces scabiei 3708 species 0 1 164348 Streptomyces puniciscabiei 3581 species 1 68249 Streptomyces pactum 0 5932 species 0 1 1889 Streptomyces ambofaciens 2954 species 5151 species 0 379067 1 Streptomyces bingchenggensis 1950 1 Streptomyces peucetius 0 2577 species 0 1 68570 Streptomyces albulus 3617 species 0 1 68280 Streptomyces violaceusniger 3882 species 0 1 38300 Streptomyces pristinaespiralis 3050 species Streptomyces pratensis 1169025 1 0 species 2534 Streptomyces leeuwenhoekii 1437453 1 0 species 2809 0 Streptomyces albus 1 1888 species 8125 0 Streptomyces venezuelae 1 54571 species 5615 species 2560 Streptomyces pluripotens 1 1355015 0 2280 species 0 1 68202 Streptomyces fulvissimus 24 2593676 0 77787 no rank 0 1 2135430 Streptomyces sp. P3 3935 species 1812480 1 Streptomyces sp. fd1-xmd 0 3281 species 3096 species 0 1961713 1 Streptomyces sp. MOE7 0 Streptomyces sp. CNQ-509 444103 1 species 3769 0 1 2094021 Streptomyces sp. WAC00288 3183 species 0 1751294 1 Streptomyces sp. 4F 2403 species Streptomyces sp. CLI2509 1984801 1 0 species 2386 3508 species 0 1725411 1 Streptomyces sp. CdTB01 species 3752 Streptomyces sp. 769 1 1262452 0 1 1561022 Streptomyces sp. CCM_MD2014 0 3088 species 0 1837283 1 Streptomyces sp. S8 2390 species species 2946 0 Streptomyces sp. SAT1 1 1849967 3174 species 1972846 1 Streptomyces sp. Sge12 0 0 1 1841249 Streptomyces sp. RTd22 4714 species 1 2059884 Streptomyces sp. CMB-StM0423 0 3536 species 3900 species 0 1 206662 Streptomyces sp. FR-008 species 2019 Streptomyces sp. SirexAA-E 862751 1 0 1495638 1 Streptomyces sp. M56 0 4420 species 1649184 1 Streptomyces sp. CFMR 7 0 2382 species 0 1 465541 Streptomyces sp. Mg1 3932 species species 2564 Streptomyces sp. PAMC 26508 1265601 1 0 1 234612 Streptomyces sp. TN58 0 3289 species 0 Streptomyces sp. Tue 6075 1661694 1 species 2813 species 3307 Streptomyces sp. 3211 1964449 1 0 species 3711 Streptomyces reticuli 1926 1 0 3616 species 29303 1 Streptomyces cattleya 0 6 1 3984 order 0 85014 4 Glycomycetales 3978 family 238 1 85034 3 Glycomycetaceae 0 Stackebrandtia 2 283810 0 genus 3740 1 40 3700 species 283811 1 Stackebrandtia nassauensis 0 Pseudonocardiales 85010 42 0 order 97818 1 150 1 1435 family 97668 0 Pseudonocardiaceae 41 2070 Alloactinosynnema 2 674734 0 genus 2736 1 6 2636053 1 0 no rank 2730 1653480 1 Alloactinosynnema sp. L-07 0 2730 species 1845 genus 8 1 2 142577 Prauserella 0 0 Prauserella marina 1 530584 species 1837 genus 1399 1 9 Saccharomonospora 1851 2 0 1390 species 0 1852 1 Saccharomonospora viridis 0 Saccharopolyspora 1835 2 1 34 genus 4991 Saccharopolyspora erythraea 1 1836 0 species 4957 1 366 genus 23183 0 Amycolatopsis 7 1813 5574 species 0 1 31958 Amycolatopsis orientalis 0 1 208439 Amycolatopsis japonica 3127 species 0 2618356 2 no rank 6911 0 Amycolatopsis sp. BJA-103 1911175 1 species 3043 Amycolatopsis sp. AA4 1 1896961 0 species 3868 Amycolatopsis mediterranei 33910 1 0 species 4156 3049 species 1814 1 Amycolatopsis methanolica 0 genus 3133 1 5 Kibdelosporangium 2029 2 0 3128 species 860235 1 Kibdelosporangium phytohabitans 0 genus 13393 1 289 Actinoalloteichus 65496 6 0 1612552 1 Actinoalloteichus sp. ADI127-7 0 3002 species species 3202 Actinoalloteichus hoggarensis 1 1470176 0 Actinoalloteichus hymeniacidonis 340345 1 0 species 2140 2 2644606 0 4760 no rank 0 1 1612551 Actinoalloteichus sp. GBA129-24 2907 species 1853 species 1 2072503 Actinoalloteichus sp. AHMU CJ021 0 18 1 3728 genus 0 2 165301 Lentzea species 3710 Lentzea guizhouensis 1 1586287 0 5566 genus 30 1 43356 2 Kutzneria 0 0 1 43357 Kutzneria albida 5536 species 2071 2 Saccharothrix 0 5148 genus 21 1 103731 1 Saccharothrix espanaensis 0 5127 species 0 40566 3 Actinosynnema 371 1 11181 genus Actinosynnema mirum 1 40567 0 species 5452 0 Actinosynnema pretiosum 42197 1 species 5358 19930 genus 424 1 1847 8 Pseudonocardia 0 species 2973 0 Pseudonocardia dioxanivorans 240495 1 no rank 16533 6 2619320 0 0 Pseudonocardia sp. HH130630-07 1 1690815 species 2668 0 1 1096856 Pseudonocardia sp. EC080619-01 2727 species species 3145 0 Pseudonocardia sp. AL041005-10 1 445576 2331 species 0 1096868 1 Pseudonocardia sp. EC080625-04 Pseudonocardia sp. EC080610-09 1688404 1 0 species 2714 species 2948 Pseudonocardia sp. HH130629-09 1 1641402 0 688 no rank 1 52018 0 1650658 1 Actinobacteria bacterium IMCC26256 0 688 species 0 20 85008 Micromonosporales 68 1 44791 order 44723 family 669 1 28056 19 Micromonosporaceae 0 0 Micromonospora 4 1873 1 211 genus 10858 3969 no rank 0 1 2617518 648999 1 Micromonospora sp. L5 0 3969 species 2852 species 1003110 1 Verrucosispora maris 0 0 1 47850 Micromonospora aurantiaca 3826 species 296 1 18606 genus 0 6 1865 Actinoplanes species 3677 Actinoplanes friuliensis 1 196914 0 species 3676 0 Actinoplanes missouriensis 1 1866 10957 no rank 2626549 3 0 species 3460 0 Actinoplanes sp. SE50/110 1 134676 Actinoplanes sp. N902-109 649831 1 0 species 4037 3460 species 2033844 1 Actinoplanes sp. SE50 0 673534 4 Plantactinospora 0 10561 genus 205 1 0 2631981 3 10356 no rank 2108470 1 Plantactinospora sp. BC1 0 3338 species 2024580 1 Plantactinospora sp. KBS50 0 3533 species 3485 species 1 2071627 Plantactinospora sp. BB1 0 22 genus 84593 1 Verrucosispora 0 0 3 168694 Salinispora 51 1 4007 genus 1740 species 0 1 168695 Salinispora tropica species 2216 Salinispora arenicola 1 168697 0 order 3423 1 16 Candidatus Nanopelagicales 12 2039638 0 2162846 11 0 family 3407 0 2039639 4 Candidatus Nanopelagicus 20 1 732 genus 0 1 1884915 Candidatus Nanopelagicus hibericus 226 species species 136 Candidatus Nanopelagicus limnes 1 1884634 0 350 species 0 1 1884916 Candidatus Nanopelagicus abundans Candidatus Planktophila 7 622681 0 genus 2675 1 49 407 species 0 573600 1 Candidatus Planktophila limnetica species 473 Candidatus Planktophila lacus 1 1884913 0 1 1884907 Candidatus Planktophila vernalis 0 232 species 0 Candidatus Planktophila dulcis 1884914 1 species 578 229 species 1884904 1 Candidatus Planktophila sulfonica 0 707 species 0 1884905 1 Candidatus Planktophila versatilis 2270 no rank 1643818 2 0 1 6 genus 2270 0 Thermobispora 2 147067 2264 species 0 2006 1 Thermobispora bispora 2161 1 215104 order 0 144 85006 Micrococcales 167 1 6198 family 0 7 145357 Dermacoccaceae genus 2574 1 6 Luteipulveratus 2 745364 0 2568 species 571913 1 Luteipulveratus mongoliensis 0 1 31 genus 1895 0 Kytococcus 57499 2 species 1864 Kytococcus sedentarius 1276 1 0 2 57495 Dermacoccus 0 1562 genus 9 1 1553 species 0 1274 1 Dermacoccus nishinomiyaensis 1220 family 40 1 85018 2 Dermatophilaceae 0 1180 genus 0 1 1862 1180 species 1 1863 Dermatophilus congolensis 0 family 9863 1 44 Cellulomonadaceae 6 85016 0 1 254 genus 9819 0 Cellulomonas 1707 5 Cellulomonas flavigena 1 1711 0 species 2890 1638 no rank 2620175 1 0 0 2003551 1 Cellulomonas sp. PSBB021 1638 species 1708 1 Cellulomonas fimi 0 2492 species 0 Cellulomonas gilvus 1 11 species 2545 0 Beutenbergiaceae 125316 3 1 2 family 1697 2 84756 Beutenbergia 0 1695 genus 53 1 species 1642 Beutenbergia cavernae 1 84757 0 family 2109 1 7 Sanguibacteraceae 145360 3 0 genus 2102 1 18 Sanguibacter 60919 2 0 2084 species 1 60920 Sanguibacter keddieii 0 3 85019 Brevibacteriaceae 0 3865 family 40 1 60 1 3825 genus 0 1696 2 Brevibacterium 3765 species 0 1 1703 Brevibacterium linens 0 11 85020 Dermabacteraceae 190 1 16790 family Devriesea 2 472568 0 genus 793 1 1 Devriesea agamarum 472569 1 0 species 792 1 1 963 genus 0 36739 2 Dermabacter Dermabacter vaginalis 1630135 1 0 species 962 0 6 43668 Brachybacterium 260 1 14844 genus 43669 1 Brachybacterium faecium 0 3937 species 0 Brachybacterium ginsengisoli 1 1331682 species 2581 3178 species 1 2017484 Brachybacterium sp. VM2412 0 Brachybacterium sp. VR2415 2017485 1 0 species 2243 no rank 2645 1 2623841 0 0 Brachybacterium sp. P6-10-X1 1903186 1 species 2645 9 85021 Intrasporangiaceae 0 8891 family 64 1 0 Arsenicicoccus 2 267408 1 69 genus 3006 no rank 2937 0 1 2663846 0 1 1658671 Arsenicicoccus sp. oral taxon 190 2937 species 0 Janibacter 53457 2 1 39 genus 1858 1819 species 0 1 857417 Janibacter indicus 1206 genus 13 1 53357 2 Intrasporangium 0 species 1193 Intrasporangium calvum 53358 1 0 0 Serinicoccus 2 265976 1 22 genus 2757 2735 species 0 1758689 1 Serinicoccus sp. JLT9 0 2 85022 294 family Jonesia 43673 2 0 genus 294 1 24 species 270 Jonesia denitrificans 1 43674 0 family 10185 1 82 Promicromonosporaceae 9 85017 0 0 186188 2 Xylanimonas 21 1 2636 genus 1 186189 Xylanimonas cellulosilytica 0 2615 species 0 3 157920 Cellulosimicrobium 29 1 3157 genus 1436 no rank 1 2624466 0 1980001 1 Cellulosimicrobium sp. TH-20 0 1436 species 1692 species 1710 1 Cellulosimicrobium cellulans 0 Isoptericola 254250 3 0 genus 4310 1 110 0 Isoptericola variabilis 139208 1 species 2151 2049 species 1 372663 Isoptericola dokdonensis 0 0 39 1268 Micrococcaceae 7199 1 91562 family 36 1 8038 genus 0 1742993 4 Pseudarthrobacter 0 Pseudarthrobacter chlorophenolicus 1 85085 species 2754 3221 species 0 1 121292 Pseudarthrobacter sulfonivorans 0 361575 1 Pseudarthrobacter phenanthrenivorans 2027 species 1599 genus 5 1 1742992 2 Paenarthrobacter 0 1594 species 1 43663 Paenarthrobacter aurescens 0 0 1645 1 613 genus 613 species 0 1 1646 Renibacterium salmoninarum 0 Micrococcus 2 1269 1 22 genus 2687 1270 1 Micrococcus luteus 0 2665 species 1 17 genus 2424 0 Sinomonas 2 596707 0 37927 1 Sinomonas atrocyanea 2407 species 0 4 57493 Kocuria 85 1 7147 genus species 2562 Kocuria flava 446860 1 0 species 2781 0 Kocuria rhizophila 72000 1 1719 species 0 1 71999 Kocuria palustris 1 74 genus 6095 0 Neomicrococcus 1868332 2 6021 species 0 1 556325 Neomicrococcus aestuarii genus 43253 1 1110 Arthrobacter 15 1663 0 0 235627 12 33462 no rank 0 1 1771959 Arthrobacter sp. ATCC 21022 1640 species Arthrobacter sp. YN 2020486 1 0 species 3038 0 Arthrobacter sp. QXT-31 1357915 1 species 2780 Arthrobacter sp. Rue61a 1118963 1 0 species 1474 3147 species 0 1 290399 Arthrobacter sp. FB24 Arthrobacter sp. U41 1849032 1 0 species 3196 1 1806905 Arthrobacter sp. ZXY-2 0 1712 species 0 1690248 1 Arthrobacter sp. LS16 3799 species 1 1494608 Arthrobacter sp. PAMC 25486 0 2781 species Arthrobacter sp. YC-RL1 1 1652545 0 species 3680 0 Arthrobacter sp. ERGS1:01 1704044 1 species 3126 Arthrobacter sp. PGP41 1 2079227 0 species 3089 3471 species 37928 1 Arthrobacter crystallopoietes 0 species 5210 Arthrobacter alpinus 1 656366 0 2 1742989 Glutamicibacter 0 3504 genus 15 1 256701 1 Glutamicibacter arilaitensis 0 3489 species 8 1 6783 genus 0 3 32207 Rothia 1315 species 1 2047 Rothia dentocariosa 0 species 5460 Rothia mucilaginosa 43675 1 0 genus 2220 0 2078575 1 Arthrobacter sp. IHBB 11108 1618207 1 0 species 2220 106 no rank 577468 2 0 Tropheryma 2038 2 0 genus 106 1 1 105 species 0 2039 1 Tropheryma whipplei 85023 47 Microbacteriaceae 0 60163 family 633 1 0 Curtobacterium 4 2034 1 74 genus 4375 1478 species 0 1 69373 Curtobacterium pusillum 2823 no rank 257496 2 0 1488 species 1561023 1 Curtobacterium sp. MR_MD2014 0 species 1335 Curtobacterium sp. BH-2-1-1 1 1905847 0 489 genus 1434032 1 0 0 1 1159327 Pontimonas salivibrio 489 species 14 33882 Microbacterium 0 23164 genus 412 1 species 917 0 Microbacterium chocolatum 84292 1 0 Microbacterium paludicola 1 300019 species 1598 no rank 14060 8 2609290 0 0 Microbacterium sp. str. 'China' 2103230 1 species 2242 1795053 1 Microbacterium sp. PAMC 28756 0 2066 species species 1667 0 Microbacterium sp. CGR1 1 1696072 0 Microbacterium sp. XT11 1 367477 species 1459 Microbacterium sp. 1.5R 1 1916917 0 species 1637 species 1915 0 Microbacterium sp. BH-3-3-3 1906742 1 species 1722 Microbacterium sp. No. 7 1 1714373 0 species 1352 0 Microbacterium sp. TPU 3598 1938334 1 1442 species 0 2033 1 Microbacterium testaceum 2043 species 1 36805 Microbacterium aurum 0 0 Microbacterium hominis 162426 1 species 2692 genus 2430 1 11 Microterricola 2 518733 0 2419 species 0 1 412690 Microterricola viridarii 0 3 1655488 no rank 542 clade 542 0 3 1655489 3 1 542 genus 0 529883 3 Rhodoluna species 257 Candidatus Rhodoluna planktonica 1 535712 0 282 species 1 529884 Rhodoluna lacicola 0 9 1 1921 genus 0 3 33886 Rathayibacter 0 Rathayibacter toxicus 145458 1 species 497 species 1415 0 Rathayibacter tritici 33888 1 genus 1417 1 5 Microcella 2 337004 0 1412 species 1 279828 Microcella alkaliphila 0 Frondihabitans 447237 2 0 genus 1968 1 5 1 2626248 0 1963 no rank species 1963 0 Frondihabitans sp. PAMC 28766 1795630 1 386 genus 0 1 1705353 Aurantimicrobium minutum 708131 1 0 species 386 0 2 110932 Leifsonia 38 1 4598 genus 1575 1 Leifsonia xyli 0 4560 species 0 Agromyces 2 33877 1 14 genus 2435 453304 1 Agromyces aureus 0 2421 species 1565 genus 1 1759331 0 Cnuibacter physcomitrellae 1 1619308 0 species 1565 382 1 7689 genus 0 6 1573 Clavibacter 0 Clavibacter michiganensis 28447 5 1 1824 species 7307 subspecies 1160 0 Clavibacter insidiosus 1 33014 Clavibacter nebraskensis 1 31963 0 subspecies 1326 subspecies 1280 0 Clavibacter sepedonicus 1 31964 1717 subspecies 1 1874630 Clavibacter capsici 0 0 Cryobacterium 3 69578 1 65 genus 6551 2649013 1 0 3700 no rank 0 1 1978566 Cryobacterium sp. LW097 3700 species species 2786 0 Cryobacterium arcticum 1 670052 287372 order 2160 1 163 85007 Corynebacteriales 0 Segniliparaceae 3 316606 0 family 1512 1 4 1508 genus 10 1 286801 2 Segniliparus 0 1498 species 0 286802 1 Segniliparus rotundus Gordoniaceae 85026 9 0 family 13700 1 109 2053 8 Gordonia 0 13591 genus 309 1 2265 species 0 1 2055 Gordonia terrae 1543 species 2054 1 Gordonia bronchialis 0 2346 species 0 84595 1 Gordonia polyisoprenivorans Gordonia iterans 1004901 1 0 species 1515 no rank 3622 2 2657482 0 species 1591 0 Gordonia sp. YC-JH1 2059875 1 species 2031 Gordonia sp. KTR9 1 337191 0 1991 species 0 1 1136941 Gordonia phthalatica 0 Corynebacteriaceae 52 1653 1 408 family 91473 1831 1 91065 genus 0 51 1716 Corynebacterium 1 92706 [Brevibacterium] flavum 0 935 species species 2172 Corynebacterium glutamicum 1718 1 0 species 2618 0 Corynebacterium efficiens 152794 1 Corynebacterium lactis 1 1231000 0 species 1627 0 Corynebacterium variabile 1727 1 species 1929 1460 species 0 1 1717 Corynebacterium diphtheriae 1 571915 Corynebacterium mustelae 0 928 species 0 Corynebacterium callunae 1721 1 species 1193 0 Corynebacterium aquilae 203263 1 species 1907 43771 1 Corynebacterium urealyticum 0 1666 species 1910 species 1 575200 Corynebacterium maris 0 1 1230998 Corynebacterium frankenforstense 0 2904 species 191493 1 Corynebacterium sphenisci 0 2193 species 1671 species 0 1 1705 Corynebacterium stationis Corynebacterium doosanense 1 1121358 0 species 2270 0 28028 1 Corynebacterium flavescens 1122 species 0 Corynebacterium testudinoris 136857 1 species 1535 0 161899 1 Corynebacterium singulare 1276 species 1999 species 0 1 161896 Corynebacterium camporealensis 2395 species 225326 1 Corynebacterium halotolerans 0 1 89154 Corynebacterium terpenotabidum 0 966 species Corynebacterium falsenii 1 108486 0 species 3253 0 Corynebacterium marinum 349751 1 species 2441 1864 species 1 156978 Corynebacterium imitans 0 1050174 1 Corynebacterium epidermidicanis 0 1146 species 0 401472 1 Corynebacterium ureicelerivorans 2209 species 905 species 1 35757 Corynebacterium cystitidis 0 species 3834 0 Corynebacterium jeikeium 1 38289 0 Corynebacterium vitaeruminis 1 38305 species 3222 0 Corynebacterium kutscheri 35755 1 species 787 0 Corynebacterium phocae 161895 1 species 2175 0 1 160386 Corynebacterium casei 1642 species 2067 species 1223514 1 Corynebacterium humireducens 0 0 Corynebacterium uterequi 1 1072256 species 1787 species 878 Corynebacterium pseudotuberculosis 1 1719 0 0 Corynebacterium aurimucosum 169292 1 species 2882 3085 species 146827 1 Corynebacterium simulans 0 species 910 Corynebacterium crudilactis 1652495 1 0 258224 1 Corynebacterium resistens 0 953 species 527 species 0 161879 1 Corynebacterium kroppenstedtii 1 42817 Corynebacterium argentoratense 0 644 species 3089 species 43770 1 Corynebacterium striatum 0 1610 species 0 1 65058 Corynebacterium ulcerans 0 2 2624378 no rank 2401 1359 species 1 702967 Corynebacterium sp. NML98-0116 0 1042 species 0 1 1487956 Corynebacterium sp. ATCC 6931 species 1774 Corynebacterium glyciniphilum 1 1404244 0 1607 species 1 187491 Corynebacterium glaucum 0 species 1608 Corynebacterium atypicum 191610 1 0 1979 species 1 1697 Corynebacterium ammoniagenes 0 species 1279 0 Corynebacterium deserti 1408191 1 23 1 2537 family 0 4 85029 Dietziaceae 1 17 genus 2514 0 Dietzia 3 37914 0 1 2617939 1259 no rank 0 712270 1 Dietzia sp. oral taxon 368 1259 species species 1238 Dietzia timorensis 1 499555 0 0 31 85025 Nocardiaceae 428 1 67006 family genus 38292 1 1439 Rhodococcus 1827 23 0 0 Rhodococcus qingshengii 1 334542 species 1148 species 1715 0 Rhodococcus erythropolis 1833 1 15317 no rank 192944 12 0 0 1564114 1 Rhodococcus sp. B7740 1402 species species 597 Rhodococcus sp. WMMA185 679318 1 0 0 1 1653478 Rhodococcus sp. PBTS 1 1616 species species 1008 Rhodococcus sp. BH4 1807790 1 0 species 907 Rhodococcus sp. 2G 1 1570939 0 1166 species 1 1723645 Rhodococcus sp. 008 0 1322 species 0 1 935199 Rhodococcus sp. p52 1218 species 0 1653479 1 Rhodococcus sp. PBTS 2 1 1727214 Rhodococcus sp. H-CA8f 0 1062 species 1763 species 1 1805827 Rhodococcus sp. MTM3W5.2 0 0 Rhodococcus sp. YL-1 1 1045808 species 1178 Rhodococcus sp. WB1 1 1033922 0 species 2078 1 43767 Rhodococcus hoagii 0 1753 species 1327 species 1829 1 Rhodococcus rhodochrous 0 species 1238 0 Rhodococcus pyridinivorans 1 103816 2606 species 1 191292 Rhodococcus aetherivorans 0 species 2293 Rhodococcus jostii 1 132919 0 2514 species 1830 1 Rhodococcus ruber 0 1 1828 Rhodococcus fascians 0 1460 species 37919 1 Rhodococcus opacus 0 5482 species 0 Nocardia 1817 7 1 335 genus 28286 0 Nocardia nova 1 37330 species 3280 1 455432 Nocardia terpenica 0 4924 species 0 Nocardia cyriacigeorgica 1 135487 species 5322 37332 1 Nocardia seriolae 0 4344 species species 6464 0 Nocardia brasiliensis 37326 1 37329 1 Nocardia farcinica 0 3617 species 103761 family 419 1 1762 57 Mycobacteriaceae 0 0 670516 5 9120 genus 0 1774 1 Mycobacterium chelonae 1307 species species 1176 Mycobacterium immunogenum 83262 1 0 species 1477 Mycobacterium stephanolepidis 1520670 1 0 species 3850 0 Mycobacterium abscessus 36809 1 1578165 1 Mycobacterium saopaulense 0 1310 species 4091 1 57459 genus 0 1763 34 Mycobacterium 2704 species 0 482462 1 Mycobacterium dioxanotrophicus 11476 species group 0 8 120793 1532 species 0 701042 1 Mycobacterium marseillense 0 1 339268 Mycobacterium colombiense 2695 species species 2972 1 867 Mycobacterium intracellulare 1767 4 0 subspecies 421 0 Mycobacterium indicus pranii 1 35617 subspecies 425 Mycobacterium yongonense 1 1203599 0 Mycobacterium chimaera 1 222805 0 subspecies 1259 species 3829 0 Mycobacterium avium 1 1764 448 species 0 1138383 1 Mycobacterium paraintracellulare 1769 1 Mycobacterium leprae 0 407 species Mycobacterium ulcerans 1809 1 0 species 1502 species 1785 Mycobacterium marinum 1781 1 0 0 2249310 1 species group 1142 Mycobacterium shigaense 722731 1 0 species 1142 species 1226 Mycobacterium liflandii 261524 1 0 5097 species group 77643 4 0 1189 species 1 78331 Mycobacterium canettii 0 Mycobacterium tuberculosis 3 1773 0 species 3908 1 1400 Mycobacterium africanum 1 33894 0 biotype 1241 0 1765 1 Mycobacterium bovis 1267 biotype 1 29311 Mycobacterium haemophilum 0 958 species 0 1768 1 Mycobacterium kansasii 2586 species no rank 24485 0 2642494 13 0 Mycobacterium sp. MOTT36Y 1168287 1 species 591 species 1319 0 Mycobacterium sp. KMS 1 189918 1646 species 0 1 164757 Mycobacterium sp. JLS 2301 species 0 1682113 1 Mycobacterium sp. YC-RL4 Mycobacterium sp. QIA-37 1561223 1 0 species 1564 Mycobacterium sp. EPa45 1545728 1 0 species 1998 0 1 1920667 Mycobacterium sp. WY10 2213 species 2125 species 1 212767 Mycobacterium sp. JS623 0 species 2326 0 Mycobacterium sp. PYR15 2051552 1 Mycobacterium sp. MCS 164756 1 0 species 1254 species 1667 Mycobacterium sp. VKM Ac-1817D 1273687 1 0 0 Mycobacterium sp. NRRL B-3805 1570328 1 species 1912 0 1 1879023 Mycobacterium sp. djl-10 3569 species 0 Hoyosella 2 697025 1 3 genus 1233 species 1230 0 Hoyosella subflava 1 639313 2 1073531 0 genus 3628 1863 species 0 1788 1 Mycobacterium terrae 1765 species 875328 1 Mycobacterium sinense 0 31902 genus 13 1866885 0 species 1912 0 Mycobacterium neoaurum 1795 1 1772 1 Mycobacterium smegmatis 0 3191 species 2301 species 0 1 758802 Mycobacterium litorale 0 Mycobacterium vanbaalenii 110539 1 species 2533 2604 species 1771 1 Mycobacterium phlei 0 1797 1 Mycobacterium thermoresistibile 0 2411 species Mycobacterium rhodesiae 1 36814 0 species 1614 1791 1 Mycobacterium aurum 0 3402 species Mycobacterium fortuitum 1 1766 0 species 1806 species 2810 0 Mycobacterium vaccae 1810 1 species 2478 0 Mycobacterium gilvum 1 1804 0 Mycobacterium chubuense 1800 1 species 1988 0 Mycobacterium goodii 134601 1 species 2852 0 697024 2 1007 no rank genus 1007 1 8 Lawsonella 1847725 2 0 species 999 Lawsonella clevelandensis 1528099 1 0 family 4216 1 17 Tsukamurellaceae 4 85028 0 genus 4199 1 64 Tsukamurella 3 2060 0 0 Tsukamurella paurometabola 1 2061 species 1512 species 2623 0 Tsukamurella tyrosinosolvens 1 57704 21 1 10887 order 0 85013 7 Frankiales 6 74712 Frankiaceae 0 10866 family 117 1 0 5 1854 Frankia 225 1 10749 genus species 2288 0 Frankia alni 1859 1 298654 1 Frankia inefficax 0 3182 species 1 106370 Frankia casuarinae 0 1842 species 2632575 1 0 3212 no rank 298653 1 Frankia sp. EAN1pec 0 3212 species 4 622452 Kineosporiales 0 3747 order 9 1 3738 family 65 1 3 83778 Kineosporiaceae 0 genus 3673 1 15 Kineococcus 33981 2 0 species 3658 0 Kineococcus radiotolerans 131568 1 785264 order 511 1 85004 25 Bifidobacteriales 0 0 Bifidobacteriaceae 31953 24 1 27637 family 784753 Bifidobacterium 19 1678 0 genus 750103 1 2975 species 5448 Bifidobacterium dentium 1689 1 0 10671 species 0 1 1680 Bifidobacterium adolescentis 14051 species 0 1 28026 Bifidobacterium pseudocatenulatum 1687 1 Bifidobacterium coryneforme 0 2189 species 0 Bifidobacterium bifidum 1 1681 species 36529 0 1 1691 Bifidobacterium indicum 2156 species Bifidobacterium choerinum 35760 1 0 species 3650 6283 species 1 1683 Bifidobacterium angulatum 0 0 1685 1 Bifidobacterium breve 69509 species species 6212 Bifidobacterium pseudolongum 1 1694 0 541886 species 216816 1 Bifidobacterium longum 0 8651 species 1 28025 Bifidobacterium animalis 0 18630 species 5166 1 2 1686 Bifidobacterium catenulatum 0 subspecies 13464 Bifidobacterium kashiwanohense 630129 1 0 species 3004 0 Bifidobacterium actinocoloniiforme 1 638619 4034 species 0 1684 1 Bifidobacterium asteroides 1 33905 Bifidobacterium thermophilum 0 5840 species species 8385 0 Bifidobacterium scardovii 158787 1 Gardnerella 2 2701 0 genus 2488 1 2 0 2702 1 Gardnerella vaginalis 2486 species 1 196081 0 genus 1295 1295 species 0 1 78259 Scardovia inopinata genus 3230 196082 1 0 3230 species 1 78258 Parascardovia denticolens 0 0 7 84992 Acidimicrobiia 11 1 2515 class 73 1 2504 order 0 6 84993 Acidimicrobiales Acidimicrobiaceae 3 84994 0 family 580 1 13 0 53634 2 Acidimicrobium 10 1 567 genus 0 Acidimicrobium ferrooxidans 1 53635 species 557 family 1851 0 2448023 2 9 1 1851 genus 0 682522 2 Ilumatobacter species 1842 0 Ilumatobacter coccineus 467094 1 1318 phylum 68297 6 0 3 1 1318 class 0 203486 6 Dictyoglomia order 1315 1 1 Dictyoglomales 5 203487 0 family 1314 1 1 Dictyoglomaceae 203488 4 0 1 3 genus 1313 0 Dictyoglomus 13 3 0 Dictyoglomus turgidum 1 513050 species 655 0 1 14 Dictyoglomus thermophilum 655 species 0 13 40117 7760 phylum Nitrospira 203693 13 0 class 7760 1 35 1 152 order 7725 0 Nitrospirales 12 189778 41 1 7573 family 0 11 189779 Nitrospiraceae 28261 1 0 genus 722 Thermodesulfovibrio yellowstonii 1 28262 0 species 722 Leptospirillum 179 4 0 genus 1538 1 3 261386 1 0 species group 683 0 178606 1 Leptospirillum ferriphilum 683 species 347 species group 655606 1 0 species 347 0 Leptospirillum ferrooxidans 1 180 species group 505 0 261385 1 species 505 Leptospirillum sp. Group II 'CF-1' 1660083 1 0 1 37 genus 5272 0 Nitrospira 1234 5 species 842 Nitrospira japonica 1 1325564 0 species 2105 0 Nitrospira moscoviensis 1 42253 species 984 Candidatus Nitrospira inopinata 1 1715989 0 species 1304 Nitrospira defluvii 330214 1 0 0 200940 9 1065 phylum class 1065 1 2 Thermodesulfobacteria 67799 9 0 order 1063 0 188710 8 Thermodesulfobacteriaceae 188711 8 0 family 1063 1 5 1 3 genus 458 0 Thermodesulfatator 241192 2 455 species 0 171695 1 Thermodesulfatator indicus 0 444090 2 Caldimicrobium 1 1 180 genus Caldimicrobium thiodismutans 1653476 1 0 species 179 1 5 genus 420 0 Thermodesulfobacterium 1740 3 0 Thermodesulfobacterium commune 1741 1 species 165 species 250 Thermodesulfobacterium geofontis 1295609 1 0 0 200783 26 6444 phylum class 6444 1 39 Aquificae 187857 26 0 0 Desulfurobacteriales 1485951 5 1 12 order 1602 0 Desulfurobacteriaceae 4 558314 1 3 family 1590 171868 2 Thermovibrio 0 838 genus 4 1 228745 1 Thermovibrio ammonificans 0 834 species 749 genus 64159 1 0 749 species 0 64160 1 Desulfurobacterium thermolithotrophum 1 4 order 4803 0 Aquificales 32069 20 6 1 1430 family 0 224027 6 Hydrogenothermaceae 690 genus 1 1 2 182899 Persephonella 0 689 species 309805 1 Persephonella marina 0 4 1 734 genus 0 212790 3 Sulfurihydrogenibium 394 species 0 1 309806 Sulfurihydrogenibium azorense 2619248 1 0 no rank 336 species 336 Sulfurihydrogenibium sp. YO3AOP1 1 436114 0 0 64898 11 Aquificaceae 2 1 2942 family 2 75905 0 genus 706 Thermocrinis ruber 1 75906 0 species 419 species 287 Thermocrinis albus 1 136094 0 genus 169 0 1 939 0 Hydrogenobacter thermophilus 940 1 species 169 genus 417 0 1 2713 species 417 Aquifex aeolicus 1 63363 0 1 29 genus 1648 0 Hydrogenobaculum 168657 6 1619 no rank 5 2622382 0 1 547146 Hydrogenobaculum sp. SN 0 365 species 0 1 547143 Hydrogenobaculum sp. 3684 365 species Hydrogenobaculum sp. Y04AAS1 1 380749 0 species 159 species 365 Hydrogenobaculum sp. SHO 1 547145 0 0 1 547144 Hydrogenobaculum sp. HO 365 species 90150 2 0 427 no rank Thermosulfidibacter 2 412592 0 genus 427 1 3 1 412593 Thermosulfidibacter takaii 0 424 species clade 4352844 0 1783270 372 142182 8 0 8367 phylum class 8367 1 45 Gemmatimonadetes 219685 8 0 7 219686 Gemmatimonadales 0 8322 order 184 1 0 Gemmatimonadaceae 219687 6 1 38 family 8138 173479 3 Gemmatimonas 0 4192 genus 23 1 0 Gemmatimonas aurantiaca 1 173480 species 2214 1379270 1 Gemmatimonas phototrophica 0 1955 species 2 1706036 Gemmatirosa 0 3908 genus 17 1 Gemmatirosa kalamazoonesis 1 861299 0 species 3891 1 456828 0 phylum 622 genus 622 456826 1 0 0 Candidatus Cloacimonas acidaminovorans 1 456827 species 622 0 358 68336 4339701 clade phylum 23732 0 1090 22 71 1 23732 class 0 191410 22 Chlorobia 0 191411 21 Chlorobiales 222 1 23661 order 0 Chlorobiaceae 191412 20 1 99 family 23439 2 100715 Chloroherpeton 0 965 genus 35 1 species 930 0 Chloroherpeton thalassium 100716 1 8753 no rank 0 274493 8 1 9 genus 5773 0 Chlorobium 1091 5 0 Chlorobium chlorochromatii 1 337090 species 628 Chlorobium phaeovibrioides 1094 1 0 species 1087 0 Chlorobium limicola 1092 1 species 1200 2849 species 0 1 1096 Chlorobium phaeobacteroides genus 2980 1 18 Pelodictyon 3 1099 0 0 1 1100 Pelodictyon luteolum 2013 species 1 34090 Pelodictyon phaeoclathratiforme 0 949 species 5 1101 Prosthecochloris 0 4305 genus 2 1 2632826 3 0 no rank 3629 1974213 1 Prosthecochloris sp. HL-130-GSB 0 928 species 1910 species 0 281093 1 Prosthecochloris sp. GSB1 1 1868325 Prosthecochloris sp. CIB 2401 0 791 species Prosthecochloris aestuarii 1 1102 0 species 674 genus 9317 1 72 Chlorobaculum 4 256319 0 species 3628 0 Chlorobaculum parvum 1 274539 1097 1 Chlorobaculum tepidum 0 1870 species 3747 species 0 1 274537 Chlorobaculum limnaeum 0 976 329 Bacteroidetes 56 1 4314021 phylum 0 Cytophagia 768503 57 1 263 class 71934 342 1 71671 order 0 56 768507 Cytophagales 1 126 family 43952 0 Hymenobacteraceae 16 1853232 Hymenobacter 89966 8 0 genus 33749 1 411 species 4567 Hymenobacter swuensis 1 1446467 0 5237 species 1 1411621 Hymenobacter sedentarius 0 no rank 23534 5 2615202 0 4922 species 1484116 1 Hymenobacter sp. PAMC 26554 0 Hymenobacter sp. DG25A 1 1385663 0 species 3303 species 6398 0 Hymenobacter sp. PAMC 26628 1 1484118 1 1385664 Hymenobacter sp. DG25B 0 4011 species 0 1 1356852 Hymenobacter sp. APR13 4900 species 0 1379908 4 Rufibacter 24 1 5669 genus 2 2639626 0 no rank 3503 species 1189 Rufibacter sp. DG15C 1379909 1 0 2314 species 0 1379910 1 Rufibacter sp. DG31D species 2142 Rufibacter tibetensis 512763 1 0 323449 3 Pontibacter 0 4408 genus 8 1 species 2170 0 Pontibacter akesuensis 388950 1 1 400092 Pontibacter korlensis 0 2230 species 864 family 0 2762301 2 4 1 864 genus 0 2 869806 Marivirga 0 1006 1 Marivirga tractuosa 860 species 1 11 family 4114 0 Flammeovirgaceae 4 200667 0 2 59739 Flammeovirga 3 1 1852 genus 1849 no rank 2637820 1 0 0 Flammeovirga sp. MY04 1191459 1 species 1849 no rank 2251 0 1 340671 2251 species 1 1257021 Flammeovirgaceae bacterium 311 0 1 41 family 3554 0 Cyclobacteriaceae 9 563798 246875 1 0 genus 523 0 Algoriphagus sp. M8-2 1727163 1 species 523 genus 1425 1 5 Cyclobacterium 68288 3 0 species 539 0 Cyclobacterium marinum 104 1 0 320787 1 Cyclobacterium amurskyense 881 species genus 583 1 1 Belliella 2 232244 0 582 species 0 1 232259 Belliella baltica Echinicola 2 390846 0 genus 982 1 1 0 1 390884 Echinicola vietnamensis 981 species 301 family 1501348 2 0 153 genus 0 1 273135 1 2641185 0 no rank 153 species 153 Cardinium endosymbiont of Encarsia pergandiella 249402 1 0 148 genus 0 1 281119 0 Candidatus Amoebophilus asiaticus 281120 1 species 148 1 1 family 1961 0 Persicobacteraceae 1853234 3 1 3 genus 1960 0 Persicobacter 59740 2 1957 no rank 2664020 1 0 1957 species 1 1085624 Persicobacter sp. JZB09 0 16 89373 Cytophagaceae 0 15684 family 47 1 1 1 1777 genus 0 105 2 Runella 1776 species 0 106 1 Runella slithyformis 4 1 1324 genus 0 2 861914 Fibrella 1 2620963 0 no rank 1320 0 1834519 1 Fibrella sp. ES10-3-2-2 1320 species 0 Spirosoma 6 107 1 47 genus 8230 species 2103 Spirosoma montaniterrae 1 1178516 0 0 Spirosoma aerolatum 1 1211326 species 968 species 1563 0 Spirosoma sp. HA7 1 2057025 species 2266 Spirosoma rigui 564064 1 0 1379870 1 Spirosoma radiotolerans 0 1283 species Dyadobacter 120831 2 0 genus 2501 1 2 2499 species 1 94254 Dyadobacter fermentans 0 695 genus 7 1 978 2 Cytophaga 0 1 985 Cytophaga hutchinsonii 0 688 species 319458 1 0 genus 1110 1110 species 1 316068 Leadbetterella byssophila 0 0 Bernardetiaceae 3 1937968 1 4 family 899 genus 895 1 1 Bernardetia 1937972 2 0 Bernardetia litoralis 1 999 0 species 894 class 4078782 1 163 Bacteroidia 71 200643 0 4 1 6474 order 0 1970189 11 Marinilabiliales family 1061 1 5 Salinivirgaceae 3 1970190 0 1056 genus 1 1 2 1970191 Salinivirga 0 species 1055 0 Salinivirga cyanobacteriivorans 1307839 1 3 558415 Marinilabiliaceae 0 1512 family 6 1 0 Alkalitalea 1193324 2 1 2 genus 1506 0 1 889453 Alkalitalea saponilacus 1504 species 0 1 1573805 1422 family 1422 genus 0 1 2060722 0 Marinifilaceae bacterium SPP2 1 1717717 species 1422 0 Prolixibacteraceae 3 1471398 1 2 family 2475 1471399 2 Draconibacterium 0 2473 genus 4 1 2469 species 1 1168034 Draconibacterium orientale 0 4072145 order 1299 1 171549 59 Bacteroidales 0 74 1 196452 family 0 171552 11 Prevotellaceae 196378 genus 318 1 838 10 Prevotella 0 species 6410 0 Prevotella enoeca 1 76123 0 Prevotella fusca 589436 1 species 14930 Prevotella ruminicola 1 839 0 species 17444 16787 species 0 1 52227 Prevotella dentalis 0 1 28129 Prevotella denticola 11170 species Prevotella melaninogenica 28132 1 0 species 16556 0 1 1177574 Prevotella jejuni 14295 species no rank 3596 2638335 1 0 0 Prevotella sp. oral taxon 299 652716 1 species 3596 94872 species 0 28131 1 Prevotella intermedia 86115 family 24 1 2005519 3 Barnesiellaceae 0 86091 genus 70 1 397864 2 Barnesiella 0 1 397865 Barnesiella viscericola 0 86021 species Porphyromonadaceae 171551 4 0 family 8423 1 23 0 Porphyromonas 836 3 1 4 genus 8400 species 1893 Porphyromonas asaccharolytica 1 28123 0 0 1 837 Porphyromonas gingivalis 6503 species 2005520 6 0 10028 family 3327 genus 6 1 307628 2 Petrimonas 0 0 1 1642646 Petrimonas mucosa 3321 species Proteiniphilum 2 294702 0 genus 3760 1 8 1 1642647 Proteiniphilum saccharofermentans 0 3752 species 1 3 genus 2941 0 Fermentimonas 2 1784836 species 2938 Fermentimonas caenicola 1562970 1 0 0 5 171550 Rikenellaceae 17 1 175623 family 20 1 2496 genus 0 1611681 2 Mucinivorans Mucinivorans hirudinis 1 1433126 0 species 2476 0 Alistipes 239759 2 1 66 genus 173110 214856 1 Alistipes finegoldii 0 173044 species 0 333046 5 300095 no rank 0 Candidatus Azobacteroides 511434 2 1 2 genus 843 species 841 0 Candidatus Azobacteroides pseudotrichonymphae 511435 1 299252 genus 0 3 909656 species 84268 Bacteroides dorei 357276 1 0 152332 species 0 821 1 Bacteroides vulgatus 376805 1 Bacteroides salanitronis 0 62652 species 1 74 family 2895154 0 Bacteroidaceae 815 11 2895080 genus 47739 1 816 10 Bacteroides 0 species 245780 0 Bacteroides caccae 47678 1 Bacteroides helcogenes 290053 1 0 species 44803 1796613 1 Bacteroides caecimuris 0 126512 species species 34792 Bacteroides zoogleoformans 1 28119 0 0 Bacteroides thetaiotaomicron 818 1 species 365188 0 1 246787 Bacteroides cellulosilyticus 235047 species species 955737 Bacteroides ovatus 1 28116 0 0 Bacteroides fragilis 817 1 species 803555 35927 species 28113 1 Bacteroides heparinolyticus 0 family 2865 0 2 2005523 346096 2 Paludibacter 0 2865 genus 8 1 Paludibacter propionicigenes 185300 1 0 species 2857 7 2005525 Tannerellaceae 0 330387 family 120 1 314141 genus 142 1 375288 3 Parabacteroides 0 no rank 209600 0 1 2649774 0 Parabacteroides sp. CT06 2025876 1 species 209600 0 Parabacteroides distasonis 823 1 species 104399 Tannerella 195950 3 0 genus 16126 1 47 5772 no rank 0 1 2620507 species 5772 0 Tannerella sp. oral taxon HOT-286 1 712710 0 Tannerella forsythia 1 28112 species 10307 no rank 1890 1 185291 0 1890 species 0 1 1400053 Bacteroidales bacterium CF 1 2 family 63814 0 Odoribacteraceae 1853231 3 2 283168 Odoribacter 0 63812 genus 12 1 63800 species 28118 1 Odoribacter splanchnicus 0 1 31 class 3004 0 Saprospiria 7 1937959 Saprospirales 6 1936988 0 order 2973 1 29 family 1108 0 89374 2 1007 2 Saprospira 0 1108 genus 5 1 Saprospira grandis 1 1008 0 species 1103 1937961 3 Haliscomenobacteraceae 0 1836 family 5 1 0 2 2349 Haliscomenobacter 8 1 1831 genus Haliscomenobacter hydrossis 2350 1 0 species 1823 0 7 1100069 Bacteroidetes Order II. Incertae sedis 176 1 12185 order Rhodothermaceae 6 563843 0 family 12009 1 101 2 29548 Rhodothermus 0 5588 genus 110 1 species 5478 0 Rhodothermus marinus 1 29549 4424 no rank 1 1196022 0 0 1 1779382 Rhodothermaceae bacterium RA 4424 species 146918 2 Salinibacter 0 1896 genus 2 1 0 1 146919 Salinibacter ruber 1894 species 33 1 12689 class 0 17 1853228 Chitinophagia order 12656 1 41 Chitinophagales 16 1853229 0 15 563835 Chitinophagaceae 0 12615 family 57 1 genus 2438 1 3 Niastella 2 354354 0 species 2435 Niastella koreensis 1 354356 0 genus 699 1 3 Flavisolibacter 398041 2 0 696 species 1492898 1 Flavisolibacter tropicus 0 3002 genus 1 1 379899 3 Niabella 0 species 1266 Niabella soli 1 446683 0 1735 species 1 1176587 Niabella ginsenosidivorans 0 3 79328 Chitinophaga 0 3287 genus 6 1 Chitinophaga pinensis 1 79329 0 species 2164 0 2029983 1 Chitinophagaceae bacterium 13 1117 species 2091 genus 2 1 2 649460 Filimonas 0 0 Filimonas lacunae 477680 1 species 2089 Arachidicoccus 1769012 2 0 genus 1041 1 3 0 1 2636138 no rank 1038 0 Arachidicoccus sp. BS20 1 1850526 species 1038 116474 class 99 1 117743 146 Flavobacteriia 0 200644 145 Flavobacteriales 0 116375 order 123 1 no rank 242 0 3 313602 genus 75 0 1940138 1 species 75 Candidatus Walczuchella monophlebidarum 1415657 1 0 2 1 167 genus 0 336809 2 Candidatus Sulcia species 165 0 Candidatus Sulcia muelleri 1 336810 family 1 Cryomorphaceae 1 246874 0 1755828 2 Ichthyobacteriaceae 0 308 family 1 1 1 1755829 0 genus 307 0 1 242600 Ichthyobacterium seriolicida 307 species 0 2 1333713 family 648 0 Owenweeksia 2 267986 1 2 genus 648 646 species 0 1 253245 Owenweeksia hongkongensis family 45258 0 2762318 21 471 genus 1013 1 0 471 species 0 1014 1 Weeksella virosa 0 34084 2 Riemerella 1 1 2804 genus 0 Riemerella anatipestifer 34085 1 species 2803 10575 genus 90 1 2 28250 Ornithobacterium 0 species 10485 Ornithobacterium rhinotracheale 28251 1 0 no rank 24614 10 2782232 0 0 59732 9 Chryseobacterium 25 1 21929 genus 3032 no rank 0 3 2593645 0 Chryseobacterium sp. T16E-39 1 2015076 species 1005 Chryseobacterium sp. StRB126 1 878220 0 species 1075 species 952 Chryseobacterium sp. IHB B 17019 1 1721091 0 species 2351 0 Chryseobacterium indologenes 253 1 1 558152 Chryseobacterium piperi 0 874 species 0 1265445 1 Chryseobacterium camelliae 1203 species 885 species 0 1685010 1 Chryseobacterium glaciei Chryseobacterium gallinarum 1 1324352 0 species 13559 0 2782228 1 2685 genus Chryseobacterium taklimakanense 536441 1 0 species 2685 1 28 genus 6794 0 Elizabethkingia 308865 6 0 1 1756149 Elizabethkingia genomosp. 3 1005 species species 1664 0 Elizabethkingia miricola 1 172045 1312 species 238 1 Elizabethkingia meningoseptica 0 0 Elizabethkingia anophelis 1 1117645 species 2069 1 1756150 Elizabethkingia genomosp. 4 0 716 species 1254 1 67675 family 0 49546 102 Flavobacteriaceae 0 237 9 Flavobacterium 20 1 8525 genus species 2587 Flavobacterium johnsoniae 1 986 0 0 Flavobacterium indicum 1 312277 species 550 Flavobacterium crassostreae 1 1763534 0 species 716 1027 species 0 1 1492737 Flavobacterium gilvum 1155 species 1 996 Flavobacterium columnare 0 Flavobacterium commune 1306519 1 0 species 1064 Flavobacterium branchiophilum 55197 1 0 species 876 0 96345 1 Flavobacterium psychrophilum 530 species 1 8 genus 3515 0 Polaribacter 52959 6 species 791 Polaribacter vadi 1 1774273 0 0 3 196858 no rank 1875 species 615 0 Polaribacter sp. ALD11 2058137 1 515 species 1 313598 Polaribacter sp. MED152 0 0 Polaribacter sp. BM10 1529069 1 species 745 0 Polaribacter reichenbachii 996801 1 species 841 9 1 1197 genus 0 326319 4 Dokdonia 2 2615033 0 768 no rank 206 species 313590 1 Dokdonia sp. MED134 0 983548 1 Dokdonia sp. 4H-3-7-5 0 562 species Dokdonia donghaensis 1 326320 0 species 420 723 genus 0 1 393005 723 species 0 1 2069432 Tamlana sp. UJ94 3 225842 Formosa 0 647 genus 1 1 2 2644710 0 646 no rank 348 species 0 1336795 1 Formosa sp. Hel3_A1_48 species 298 0 Formosa sp. Hel1_33_131 1336794 1 genus 551 1 1 Lutibacter 358023 2 0 550 species 1 1622118 Lutibacter profundi 0 genus 1048 0 1 1176327 no rank 1048 0 2636237 1 Aureitalea sp. RR4-38 1 2094025 0 species 1048 652 genus 0 1 261827 652 species 0 1 1736674 Algibacter alginicilyticus 0 178469 1 genus 698 0 Arenibacter algicola 616991 1 species 698 0 Robiginitalea 2 252306 1 7 genus 1896 1889 species 0 252307 1 Robiginitalea biformata 5 363408 Nonlabens 0 2083 genus 1 1 328515 1 Nonlabens dokdonensis 0 541 species 2 2615035 0 no rank 923 species 445 Nonlabens sp. MIC269 1476901 1 0 0 1 2058134 Nonlabens sp. MB-3u-79 478 species 1 319236 Nonlabens sediminis 0 618 species genus 468 1 216431 0 1 313588 Croceibacter atlanticus 0 468 species 111500 3 Muricauda 0 1690 genus 4 1 species 746 Muricauda lutaonensis 1 516051 0 0 Muricauda ruestringensis 111501 1 species 940 genus 878 0 1 1209327 Flavivirga eckloniae 1 1803846 0 species 878 0 Myroides 76831 5 1 68 genus 5298 575 species 480520 1 Myroides profundi 0 3139 species 1 76832 Myroides odoratimimus 0 1516 no rank 2642485 2 0 1458492 1 Myroides sp. ZB35 0 727 species 789 species 1 1583100 Myroides sp. A21 0 0 2 112040 Zobellia 5 1 1067 genus 1062 species 0 63186 1 Zobellia galactanivorans 1 68 genus 12734 0 Capnocytophaga 1016 15 0 2640652 6 no rank 4666 0 1945657 1 Capnocytophaga sp. H2931 532 species 590 species 1 1945658 Capnocytophaga sp. H4358 0 629 species 1 1316593 Capnocytophaga sp. oral taxon 864 0 species 681 Capnocytophaga sp. oral taxon 323 1 1705617 0 Capnocytophaga sp. oral taxon 878 1316596 1 0 species 971 1263 species 0 209053 1 Capnocytophaga sp. ChDC OS43 0 Capnocytophaga stomatis 1 1848904 species 831 563 species 1 28189 Capnocytophaga cynodegmi 0 0 Capnocytophaga haemolytica 45243 1 species 749 850 species 1 28188 Capnocytophaga canimorsus 0 species 1391 Capnocytophaga leadbetteri 1 327575 0 0 Capnocytophaga sputigena 1 1019 species 1779 species 830 0 Capnocytophaga ochracea 1018 1 1 1017 Capnocytophaga gingivalis 0 1007 species Maribacter 252356 5 0 genus 2951 1 1 species 818 0 Maribacter cobaltidurans 1 1178778 2615042 3 0 no rank 2132 0 Maribacter sp. 1_2014MBL_MicDiv 1644130 1 species 649 0 313603 1 Maribacter sp. HTCC2170 787 species 0 1 1836467 Maribacter sp. T28 696 species 83612 1 0 genus 557 species 557 0 Psychroflexus torquis 1 57029 808 genus 9 1 417127 2 Zunongwangia 0 799 species 0 398743 1 Zunongwangia profunda 1 1649495 0 genus 910 910 no rank 0 1 2622645 1 1936081 Seonamhaeicola sp. S2-3 0 910 species 0 1 336276 genus 501 1 2615019 0 501 no rank Olleya sp. Bg11-27 1 2058135 0 species 501 0 Gramella 292691 5 1 15 genus 3037 Gramella forsetii 1 411153 0 species 682 species 673 0 Gramella sp. LPB0144 1913577 1 0 Gramella flava 1 1486245 species 816 Gramella sp. SH35 1 2126553 0 species 851 genus 954 1 9 Salegentibacter 2 143222 0 1 2633436 0 no rank 945 species 945 0 Salegentibacter sp. T436 1 1729720 0 286104 2 1699 genus 0 2 2615021 no rank 1699 0 754409 1 Winogradskyella sp. PG-2 798 species 1936080 1 Winogradskyella sp. J14-2 0 901 species genus 561 1 389486 0 2648869 1 0 561 no rank 561 species 1 1453352 Sediminicola sp. YIK13 0 0 1 1204360 495 genus 495 species 762954 1 Siansivirga zeaxanthinifaciens 0 genus 597 1518147 1 0 597 species 1 1790137 Wenyingzhuangia fucanilytica 0 Lacinutrix 4 291183 0 genus 1817 1 6 species 823 0 Lacinutrix venerupis 1 1486034 988 no rank 2 2647285 0 0 Lacinutrix sp. 5H-3-7-4 983544 1 species 535 Lacinutrix sp. Bg11-31 1 2057808 0 species 453 2496 genus 11 1 104267 5 Tenacibaculum 0 635 species 0 1 669041 Tenacibaculum dicentrarchi 548 species 0 107401 1 Tenacibaculum maritimum species 813 Tenacibaculum jejuense 1 584609 0 Tenacibaculum todarodis 1850252 1 0 species 489 0 1 153265 genus 693 0 Aequorivita sublithincola 1 101385 species 693 2 61432 0 1703 no rank 0 Flavobacteriaceae bacterium UJ101 1 1150389 species 756 Flavobacteriaceae bacterium 3519-10 531844 1 0 species 947 0 2700084 1 genus 667 0 Lutibacter sp. LPB0138 1850246 1 species 667 104264 4 Cellulophaga 0 2305 genus 7 1 species 802 0 Cellulophaga lytica 979 1 0 Cellulophaga baltica 76594 1 species 789 Cellulophaga algicola 59600 1 0 species 707 39782 10 Blattabacteriaceae 0 1189 family 3 1 0 Blattabacterium 9 34098 1 97 genus 1186 species 148 0 Blattabacterium cuenoti 1653831 1 no rank 770 0 6 2647581 39768 1 Blattabacterium sp. (Mastotermes darwiniensis) 0 176 species 0 624186 1 Blattabacterium sp. (Blattella germanica) 102 species 1 1316444 Blattabacterium sp. (Nauphoeta cinerea) 0 144 species Blattabacterium sp. (Blatta orientalis) 367806 1 0 species 122 0 1 1186051 Blattabacterium sp. (Blaberus giganteus) 103 species 0 Blattabacterium sp. (Periplaneta americana) 1 367488 species 123 0 1 164514 Blattabacterium punctulatus 171 species 0 Crocinitomicaceae 3 1853230 1 3 family 931 928 genus 26 1 332102 2 Fluviicola 0 191579 1 Fluviicola taffensis 0 902 species 0 Sphingobacteriia 23 117747 1 15 class 18897 18882 order 60 1 200666 22 Sphingobacteriales 0 21 84566 Sphingobacteriaceae 0 18822 family 40 1 genus 4094 1 26 Mucilaginibacter 423349 4 0 Mucilaginibacter gotjawali 1550579 1 0 species 1903 1229 no rank 1 2617802 0 0 1 1300914 Mucilaginibacter sp. PAMC 26640 1229 species 936 species 1 1234841 Mucilaginibacter sp. BJC16-A31 0 0 2 1649482 Pseudopedobacter 3 1 1030 genus 1027 species 1 151895 Pseudopedobacter saltans 0 genus 1191 929509 1 0 995 1 Solitalea canadensis 0 1191 species 0 84567 6 Pedobacter 21 1 6127 genus 1396 species 0 1 188932 Pedobacter cryoconitis 1213 no rank 1 2628915 0 1213 species 0 1727164 1 Pedobacter sp. PACM 27299 Pedobacter steynii 1 430522 0 species 1298 Pedobacter heparinus 984 1 0 species 1053 363852 1 Pedobacter ginsengisoli 0 1146 species no rank 1047 0 84568 1 1047 species 1 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 27 1 5293 genus 0 6 28453 Sphingobacterium 4142 no rank 0 4 2609468 1 1538644 Sphingobacterium sp. ML3W 0 802 species Sphingobacterium sp. 21 743722 1 0 species 831 1185 species 1 1933220 Sphingobacterium sp. B29 0 species 1324 0 Sphingobacterium sp. G1-14 1 2003121 0 Sphingobacterium mizutaii 1 1010 species 1124 1948 phylum 1134404 7 0 0 Ignavibacteria 7 795747 1 2 class 1948 Ignavibacteriales 6 795748 0 order 1946 1 8 1334117 3 Melioribacteraceae 0 1164 family 11 1 1153 genus 1 1 2 1134403 Melioribacter 0 Melioribacter roseus 1134405 1 0 species 1152 family 774 1 3 Ignavibacteriaceae 2 795749 0 795750 1 0 genus 771 771 species 0 1 591197 Ignavibacterium album 4154 phylum 5 65842 0 Fibrobacteria 5 204430 0 class 4154 1 9 Fibrobacterales 218872 4 0 order 4145 1 14 204431 3 Fibrobacteraceae 0 4131 family 3 1 Fibrobacter 832 2 0 genus 4128 1 10 4118 species 0 833 1 Fibrobacter succinogenes 2138240 2 0 500 phylum 2 2138243 Coprothermobacteria 0 500 class 1 1 0 1 2138246 order 499 0 1 2138247 499 family 68335 1 0 genus 499 Coprothermobacter proteolyticus 35786 1 0 species 499 0 200930 10 phylum 3426 class 3426 1 2 Deferribacteres 68337 10 0 0 191393 9 Deferribacterales 8 1 3424 order family 3416 1 14 Deferribacteraceae 191394 8 0 0 545865 1 genus 676 676 species 0 1 477976 Calditerrivibrio nitroreducens 0 2351 2 Flexistipes 3 1 911 genus 908 species 0 2352 1 Flexistipes sinusarabici 1140 genus 5 1 2 117999 Denitrovibrio 0 0 Denitrovibrio acetiphilus 118000 1 species 1135 1 1 675 genus 0 2 53572 Deferribacter 674 species 0 197162 1 Deferribacter desulfuricans 0 3 2323 no rank 761 clade 761 0 1783234 3 95901 2 0 clade 375 375 class 0 2497643 2 order 375 2497644 2 0 family 375 0 2497645 2 375 genus 1 1 1551504 2 Candidatus Babela 0 species 374 0 Candidatus Babela massiliensis 673862 1 386 phylum 1 95818 0 0 1 1895827 no rank 386 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 1 species 386 1901 1 3596956 phylum 0 1224 2023 Proteobacteria Acidithiobacillia 1807140 7 0 class 6054 1 1 0 225057 6 Acidithiobacillales 66 1 6053 order 0 Acidithiobacillaceae 225058 5 1 85 family 5987 0 Acidithiobacillus 4 119977 1 49 genus 5902 0 1 33059 Acidithiobacillus caldus 1893 species 1 920 Acidithiobacillus ferrooxidans 0 2161 species Acidithiobacillus ferrivorans 1 160808 0 species 1799 1 3831 class 1564651 0 Gammaproteobacteria 1236 890 0 6 1692040 Acidiferrobacterales 136 1 3966 order 206 1 3830 family 0 1692041 5 Acidiferrobacteraceae genus 1660 1 13 Sulfurifustis 1692042 2 0 1675686 1 Sulfurifustis variabilis 0 1647 species genus 1964 1 16 Sulfuricaulis 2 1744881 0 1620215 1 Sulfuricaulis limicola 0 1948 species 645424 order 2358 1 243 91347 Enterobacterales 0 1896 no rank 2 451511 0 Plesiomonas 2 702 0 genus 1896 1 12 1884 species 0 1 703 Plesiomonas shigelloides 21 1903414 Morganellaceae 0 14348 family 90 1 Photorhabdus 4 29487 0 genus 2291 1 33 768 species 574560 1 Photorhabdus temperata 0 0 1 29488 Photorhabdus luminescens 745 species 0 1 291112 Photorhabdus asymbiotica 745 species 3443 genus 25 1 626 6 Xenorhabdus 0 species 1220 Xenorhabdus bovienii 40576 1 0 species 452 Xenorhabdus poinarii 1 40577 0 0 1 351679 Xenorhabdus hominickii 469 species Xenorhabdus doucetiae 1 351671 0 species 659 618 species 0 1 628 Xenorhabdus nematophila 35 1 1598 genus 0 4 586 Providencia species 377 0 Providencia alcalifaciens 126385 1 Providencia rettgeri 1 587 0 species 443 1 588 Providencia stuartii 0 743 species 581 2 Morganella 0 3481 genus 359 1 3122 species 582 1 Morganella morganii 0 3 583 Proteus 0 3290 genus 287 1 1897 species 1 584 Proteus mirabilis 0 Proteus vulgaris 1 585 0 species 1106 155 genus 0 637 1 species 155 Arsenophonus symbiont of Lipoptena fortisetosa 634113 1 0 0 14 1903412 Hafniaceae 189 1 22843 family genus 707 1 19 Obesumbacterium 2 82982 0 0 82983 1 Obesumbacterium proteus 688 species 0 Hafnia 3 568 1 55 genus 3138 no rank 830 2621980 1 0 830 species 0 1848580 1 Hafnia sp. CBA7124 0 1 569 Hafnia alvei 2253 species 0 635 8 Edwardsiella 1169 1 18809 genus 0 2676541 2 no rank 5039 2782 species 1578828 1 Edwardsiella sp. EA181011 0 2257 species 0 1 1650654 Edwardsiella sp. LADL05-105 1 1263550 Edwardsiella piscicida 0 2873 species Edwardsiella ictaluri 1 67780 0 species 1698 4326 species 0 636 1 Edwardsiella tarda 0 1 93378 Edwardsiella hoshinae 1437 species 2267 species 1821960 1 Edwardsiella anguillarum 0 0 Pectobacteriaceae 1903410 20 1 172 family 40541 0 Pectobacterium 122277 6 1 384 genus 14350 0 Pectobacterium parmentieri 1 1905730 species 1323 2854 species 2042057 1 Pectobacterium polaris 0 species 6914 0 Pectobacterium carotovorum 554 1 0 Pectobacterium atrosepticum 1 29471 species 1486 Pectobacterium wasabiae 1 55208 0 species 1389 genus 18326 1 652 Dickeya 204037 6 0 2912 species 1 204038 Dickeya dadantii 0 0 1 204042 Dickeya zeae 2749 species species 2798 Dickeya dianthicola 1 204039 0 5915 species 0 1089444 1 Dickeya solani species 3300 Dickeya fangzhongdai 1 1778540 0 Sodalis 5 84565 0 genus 5502 1 79 Sodalis glossinidius 63612 1 0 species 1456 species 1683 0 Candidatus Sodalis pierantonius 1486991 1 species 217 0 Sodalis endosymbiont of Henestaris halophilus 1929246 1 0 Sodalis praecaptivus 1239307 1 species 2067 genus 2191 1 32 Brenneria 71655 2 0 species 2159 0 Brenneria goodwinii 1109412 1 310 1 85131 family 0 1903411 39 Yersiniaceae 0 Rouxiella 1 1565532 genus 26 11372 genus 251 1 13 629 Yersinia 0 396 species 631 1 Yersinia intermedia 0 855 species 263819 1 Yersinia aleksiciae 0 Yersinia kristensenii 1 28152 0 species 617 2499 species 630 1 Yersinia enterocolitica 0 2304 species group 0 1649845 3 633 1 Yersinia pseudotuberculosis 0 1094 species 611 species 632 1 Yersinia pestis 0 Yersinia similis 1 367190 0 species 599 0 Yersinia rohdei 29485 1 species 748 752 species 0 29483 1 Yersinia aldovae species 1948 0 Yersinia frederiksenii 29484 1 613 species 29486 1 Yersinia ruckeri 0 1 2653513 0 no rank 389 0 Yersinia sp. FDAARGOS_228 1 1839800 species 389 34037 4 Rahnella 0 6287 genus 196 1 no rank 3901 0 2 2635087 1802 species 1 1805933 Rouxiella sp. ERMR1:05 0 Rahnella sp. Y9602 741091 1 0 species 2099 1 34038 Rahnella aquatilis 0 2190 species 1 3238 genus 62823 0 Serratia 16 613 species 4467 0 Serratia plymuthica 82996 1 species 2346 0 Serratia liquefaciens 614 1 species 3470 Serratia rubidaea 1 61652 0 species 1800 0 Serratia proteamaculans 1 28151 0 2647522 8 22314 no rank 1 488142 Serratia sp. SCBI 0 3064 species 0 Serratia sp. AS13 1 768493 species 1964 0 1 768490 Serratia sp. AS12 1964 species species 1398 0 Serratia sp. ATCC 39006 104623 1 1758196 1 Serratia sp. SSNIH1 0 3483 species species 3600 Serratia sp. FGI94 671990 1 0 species 3392 0 Serratia sp. MYb239 1 2033438 3449 species 0 1 1327989 Serratia sp. FS14 0 Serratia marcescens 615 1 species 14547 1 47917 Serratia fonticola 0 5775 species Serratia ficaria 61651 1 0 species 4866 Gibbsiella 2 929812 0 genus 2898 1 7 2891 species 1 929813 Gibbsiella quercinecans 0 0 1745211 2 Chania 9 1 1415 genus species 1406 0 Chania multitudinisentens 1639108 1 family 849 2 1903416 0 2 82984 Pragia 0 849 genus 31 1 species 818 Pragia fontium 1 82985 0 1903409 27 Erwiniaceae 0 44047 family 227 1 0 Pantoea 11 53335 1 760 genus 23645 species 607 0 Candidatus Pantoea carbekii 1 1235990 species 1306 0 Pantoea alhagi 1 1891675 Pantoea vagans 1 470934 0 species 3840 0 1654067 1 3574 species group 0 1 549 Pantoea agglomerans 3574 species 1852 species 0 1 66269 Pantoea stewartii 2069 species 1 1076550 Pantoea rwandensis 0 no rank 7532 3 2630326 0 Pantoea sp. PSNIH1 1484158 1 0 species 2850 592316 1 Pantoea sp. At-9b 0 1731 species 1484157 1 Pantoea sp. PSNIH2 0 2951 species 0 553 1 Pantoea ananatis 2105 species genus 1382 1 1 Buchnera 32199 2 0 1 9 Buchnera aphidicola 0 1381 species 0 82986 2 Tatumella 11 1 1555 genus 0 Tatumella citrea 1 53336 species 1544 175 genus 0 51228 1 0 Wigglesworthia glossinidia 51229 1 species 175 8 551 Erwinia 0 10183 genus 470 1 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 1922217 species 86 species 1038 Erwinia pyrifoliae 1 79967 0 1906 species 0 1 338565 Erwinia tasmaniensis 1813 species 0 1 1619313 Erwinia gerundensis Erwinia billingiae 182337 1 0 species 2027 552 1 Erwinia amylovora 0 1381 species no rank 1462 0 1 2622719 species 1462 0 Erwinia sp. Ejp617 215689 1 genus 6880 2100764 2 0 species 3082 Pantoea gaviniae 665914 1 0 1 665913 Pantoea calida 0 3798 species Enterobacteriaceae 117 543 0 family 433411 1 3171 0 Cedecea 2 158483 1 60 genus 7450 0 Cedecea neteri 1 158822 species 7390 no rank 10241 36866 5 0 Enterobacteriaceae bacterium ENNIH2 1 1920109 0 species 1956 species 1541 Enterobacteriaceae bacterium ENNIH1 2066051 1 0 2189 species 0 891974 1 Plautia stali symbiont species 2559 Enterobacteriaceae bacterium strain FGI 57 1 693444 0 1996 species 1 1920128 Enterobacteriaceae bacterium ENNIH3 0 genus 15254 1 979 Shigella 620 4 0 3034 species 0 1 623 Shigella flexneri 5715 no rank 2629414 1 0 5715 species 1813821 1 Shigella sp. PAMC 28760 0 Shigella dysenteriae 1 622 0 species 5526 0 1 401618 genus 76 species 76 Candidatus Riesia pediculicola 1 401619 0 7140 genus 33 1 1330545 4 Lelliottia 0 2221 species 0 1 69220 Lelliottia nimipressuralis 61646 1 Lelliottia amnigena 0 3153 species 0 1907578 1 Lelliottia jeotgali 1733 species 1 409304 0 genus 120 0 1 168169 Candidatus Ishikawaella capsulata 120 species genus 74218 1 2650 Klebsiella 570 10 0 species 4298 Klebsiella quasipneumoniae 1463165 1 0 7168 no rank 2608929 2 0 0 Klebsiella sp. LTGPAF-6F 1 1905288 species 2478 species 4690 0 Klebsiella sp. M5al 1 1934254 2758 species 0 2026240 1 Klebsiella quasivariicola 0 Klebsiella aerogenes 1 548 species 4844 Klebsiella variicola 244366 1 0 species 8937 11287 species 1 571 Klebsiella oxytoca 0 Klebsiella pneumoniae 573 1 0 species 26847 1 1134687 Klebsiella michiganensis 0 5429 species 0 1048757 1 72 genus 1048758 1 Candidatus Moranella endobia 0 72 species 0 14 544 Citrobacter 1540 1 33541 genus Citrobacter farmeri 67824 1 0 species 1457 no rank 2678 0 2 2644389 0 1920110 1 Citrobacter sp. CFNIH10 1528 species 1702170 1 Citrobacter sp. FDAARGOS_156 0 1150 species species group 17359 0 7 1344959 Citrobacter braakii 57706 1 0 species 2790 Citrobacter freundii 1 546 0 species 6107 0 Citrobacter werkmanii 67827 1 species 2717 1219 species 2077148 1 Citrobacter freundii complex sp. CFNIH4 0 1488 species 0 2077147 1 Citrobacter freundii complex sp. CFNIH3 2077149 1 Citrobacter freundii complex sp. CFNIH9 0 1399 species Citrobacter freundii complex sp. CFNIH2 2066049 1 0 species 1639 35703 1 Citrobacter amalonaticus 0 5347 species Citrobacter koseri 545 1 0 species 2637 0 Citrobacter rodentium 1 67825 species 2523 22 547 Enterobacter 0 56002 genus 3398 1 0 9 2608935 no rank 14440 species 1987 0 Enterobacter sp. R4-368 1166130 1 0 Enterobacter sp. SA187 1914861 1 species 2511 Enterobacter sp. Crenshaw 1977566 1 0 species 1077 species 1546 0 Enterobacter sp. HK169 1 1868135 1002 species 0 1 1560339 Enterobacter sp. E20 399742 1 Enterobacter sp. 638 0 1408 species 0 Enterobacter sp. ODB01 1827481 1 species 1251 0 Enterobacter sp. CRENT-193 2051905 1 species 1651 1 1692238 Enterobacter sp. FY-07 0 2007 species 0 354276 12 species group 38164 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 1 0 species 1262 15399 species 0 550 1 Enterobacter cloacae 1187 species 0 208224 1 Enterobacter kobei 4105 no rank 0 2757714 3 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 1 0 species 1095 1511 species 2027919 1 Enterobacter cloacae complex bacterium 0 species 1499 0 Enterobacter cloacae complex sp. ECNIH7 1915310 1 0 1 61645 Enterobacter asburiae 5985 species 4263 1 7163 species 0 3 158836 Enterobacter hormaechei Enterobacter xiangfangensis 1 1296536 0 subspecies 1112 1 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' 0 1788 subspecies species 1656 0 Enterobacter cancerogenus 1 69218 0 Enterobacter ludwigii 1 299767 species 1407 18 191675 0 2268 no rank clade 2268 18 84563 0 1682492 1 0 180 genus species 180 Candidatus Tachikawaea gelatinosa 1 1410383 0 1 1906660 0 80 genus 1 1778264 Candidatus Mikella endobia 0 80 species 254 genus 1 1906661 0 254 species 1070130 1 Candidatus Gullanella endobia 0 1906659 2 Candidatus Hoaglandella 0 186 genus 1 1 Candidatus Hoaglandella endobia 1778263 1 0 species 185 146507 3 0 727 clade 0 secondary endosymbiont of Ctenarytaina eucalypti 1 1199245 species 428 1 134287 secondary endosymbiont of Heteropsylla cubana 0 124 species 1 568987 0 genus 175 0 1 138072 Candidatus Hamiltonella defensa 175 species clade 89 0 1 199891 1835721 1 secondary endosymbiont of Trabutina mannipara 0 89 species 0 7 84564 654 clade 0 7 203804 Candidatus Blochmannia 1 1 654 genus species 67 Candidatus Blochmannia vafer 1 251535 0 1 203907 Candidatus Blochmannia floridanus 0 202 species 0 2 711328 no rank 215 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 1505596 species 90 1505597 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 125 species species 126 0 Candidatus Blochmannia pennsylvanicus 1 101534 43 species 251542 1 Candidatus Blochmannia chromaiodes 0 Candidatus Doolittlea 1906657 2 0 genus 98 1 2 96 species 1 1778262 Candidatus Doolittlea endobia 0 0 2 1335483 Shimwellia 25 1 3246 genus Shimwellia blattae 563 1 0 species 3221 0 Escherichia 5 561 1 1009 genus 137390 species 2027 0 Escherichia marmotae 1499973 1 1 208962 Escherichia albertii 0 8666 species species 121599 0 Escherichia coli 562 1 0 564 1 Escherichia fergusonii 4089 species 0 Raoultella 3 160674 1 120 genus 10557 7578 species 54291 1 Raoultella ornithinolytica 0 0 Raoultella planticola 1 575 species 2859 1 296 genus 8521 0 Leclercia 83654 4 0 Leclercia adecarboxylata 1 83655 species 2789 0 2 2627398 5436 no rank species 2797 0 Leclercia sp. LSNIH3 1920116 1 2639 species 1 1920114 Leclercia sp. LSNIH1 0 0 1 579 genus 1459 61648 1 Kluyvera intermedia 0 1459 species Cronobacter 8 413496 0 genus 16250 1 397 1 413502 Cronobacter turicensis 0 1310 species Cronobacter sakazakii 1 28141 0 species 3823 535744 1 Cronobacter universalis 0 1847 species 1811 species 0 1 413497 Cronobacter dublinensis 1541 species 413503 1 Cronobacter malonaticus 0 Cronobacter condimenti 1163710 1 0 species 2320 species 3201 0 Cronobacter muytjensii 413501 1 genus 9929 1 90 Pluralibacter 3 1330546 0 species 5820 Pluralibacter gergoviae 61647 1 0 1334193 1 [Enterobacter] lignolyticus 0 4019 species 87 1 9731 genus 0 5 1330547 Kosakonia species 1467 0 Kosakonia sacchari 1 1158459 Kosakonia cowanii 208223 1 0 species 3018 Kosakonia oryzae 497725 1 0 species 2106 species 3053 Kosakonia radicincitans 1 283686 0 genus 26775 1 68 Salmonella 590 3 0 species 25206 Salmonella enterica 28901 1 0 54736 1 Salmonella bongori 0 1501 species 0 Chromatiales 52 135613 1 828 order 53666 0 451214 2 3333 no rank 3333 genus 81 1 1273155 2 Thiohalobacter 0 1 585455 Thiohalobacter thiocyanaticus 0 3252 species family 18097 1 347 Chromatiaceae 18 1046 0 genus 2073 1 20 Thioflavicoccus 2 156885 0 2053 species 1 80679 Thioflavicoccus mobilis 0 Nitrosococcus 1227 4 0 genus 1555 1 6 523 species 0 1 1229 Nitrosococcus oceani species 602 Nitrosococcus watsonii 473531 1 0 0 Nitrosococcus halophilus 133539 1 species 424 1 82569 0 2270 no rank 2270 species 1 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 85072 2 Allochromatium 0 2790 genus 22 1 2768 species 1 1049 Allochromatium vinosum 0 4017 genus 20 1 53392 2 Thiodictyon 0 species 3997 Candidatus Thiodictyon syntrophicum 1 1166950 0 1 124 genus 2789 0 Marichromatium 2 85076 2665 species 0 1 37487 Marichromatium purpuratum 13724 2 Thiocystis 0 2066 genus 105 1 species 1961 0 Thiocystis violascens 73141 1 190 genus 2 1 1980513 2 Candidatus Nitrosoglobus 0 0 1 1630141 Candidatus Nitrosoglobus terrae 188 species 1174 family 1 1 1738654 3 Woeseiaceae 0 1 22 genus 1173 0 Woeseia 2 1738655 Woeseia oceani 1548547 1 0 species 1151 family 2329 1 16 Granulosicoccaceae 3 449719 0 Granulosicoccus 437504 2 0 genus 2313 1 1 1 437505 Granulosicoccus antarcticus 0 2312 species family 2707 1 31 Wenzhouxiangellaceae 1676141 3 0 0 Wenzhouxiangella 1676142 2 1 99 genus 2676 0 1579979 1 Wenzhouxiangella marina 2577 species 1 21 family 2583 0 Halothiobacillaceae 255526 4 109262 3 Halothiobacillus 0 2562 genus 168 1 0 2636392 1 1461 no rank 1461 species 0 1 1860122 Halothiobacillus sp. LS2 Halothiobacillus neapolitanus 927 1 0 species 933 1 299 family 22615 0 Ectothiorhodospiraceae 18 72276 10 1 1744 genus 0 85108 2 Halorhodospira 0 Halorhodospira halophila 1053 1 species 1734 1051 2 Ectothiorhodospira 0 3280 genus 55 1 1 2684909 0 3225 no rank 3225 species 0 1442136 1 Ectothiorhodospira sp. BSL-9 1 20 genus 2095 0 Alkalilimnicola 2 133193 351052 1 Alkalilimnicola ehrlichii 0 2075 species Acidihalobacter 1765964 2 0 genus 1336 1 76 0 1 160660 Acidihalobacter prosperus 1260 species genus 1935 1 26 Spiribacter 3 1335745 0 0 1335757 1 Spiribacter curvatus 1397 species 0 Spiribacter salinus 1335746 1 species 512 0 Thioalkalivibrio 6 106633 1 166 genus 11926 1 108010 Thioalkalivibrio paradoxus 0 1575 species 0 1 2621013 1703 no rank 1703 species 1 396595 Thioalkalivibrio sp. K90mix 0 2887 species 106634 1 Thioalkalivibrio versutus 0 species 4433 0 Thioalkalivibrio sulfidiphilus 1033854 1 0 Thioalkalivibrio nitratireducens 186931 1 species 1162 6 1 1249 order 0 1775403 4 Nevskiales family 1236 2 2689614 0 0 469322 2 Steroidobacter 6 1 1236 genus Steroidobacter denitrificans 465721 1 0 species 1230 family 7 0 Sinobacteraceae 568386 1 1461 1 355227 order 0 72274 129 Pseudomonadales 42 468 Moraxellaceae 0 22373 family 48 1 0 Acinetobacter 25 469 1 346 genus 15593 Acinetobacter soli 487316 1 0 species 796 Acinetobacter equi 1 1324350 0 species 574 species 643 0 Acinetobacter indicus 756892 1 species 466 0 Acinetobacter junii 1 40215 0 Acinetobacter haemolyticus 1 29430 species 638 0 5 909768 species group 5618 species 2083 0 Acinetobacter baumannii 1 470 0 106654 1 Acinetobacter nosocomialis 607 species 1 48296 Acinetobacter pittii 0 1743 species 424 species 0 1785128 1 Acinetobacter lactucae 471 1 Acinetobacter calcoaceticus 0 761 species 0 1 40216 Acinetobacter radioresistens 621 species 438 species 0 202950 1 438 strain 62977 1 Acinetobacter sp. ADP1 0 813 species 106648 1 Acinetobacter bereziniae 0 407 species 0 108981 1 Acinetobacter schindleri 491 species 40214 1 Acinetobacter johnsonii 0 2910 no rank 0 7 196816 species 432 0 Acinetobacter sp. TGL-Y2 1 1407071 1758189 1 Acinetobacter sp. ACNIH2 0 450 species 325 species 0 1 1608473 Acinetobacter sp. NCu2D-2 Acinetobacter sp. TTH0-4 1 1646498 0 species 390 1 1808001 Acinetobacter sp. LoGeW2-3 0 465 species species 368 Acinetobacter sp. ACNIH1 1636603 1 0 0 Acinetobacter sp. SWBY1 1 2079596 species 480 563 species 0 1148157 1 Acinetobacter oleivorans 0 1 1789224 Acinetobacter larvae 269 species 0 Moraxella 475 5 1 24 genus 3392 species 389 Moraxella ovis 29433 1 0 361 species 480 1 Moraxella catarrhalis 0 1525 species 0 1 34062 Moraxella osloensis 0 Moraxella bovoculi 386891 1 species 1093 0 Psychrobacter 497 11 1 29 genus 3340 1 330922 Psychrobacter cryohalolentis 0 344 species species 322 Psychrobacter urativorans 45610 1 0 320 species 1 261164 Psychrobacter alimentarius 0 196806 6 0 1853 no rank 0 Psychrobacter sp. G 571800 1 species 275 466 species 0 1 1028416 Psychrobacter sp. DAB_AL43B Psychrobacter sp. PRwf-1 1 349106 0 species 232 0 1699622 1 Psychrobacter sp. P2G3 181 species species 317 Psychrobacter sp. P11G5 1699624 1 0 species 382 Psychrobacter sp. AntiMn-1 1720344 1 0 472 species 334543 1 Psychrobacter arcticus 0 Pseudomonadaceae 135621 86 0 family 331393 1 2035 0 Oblitimonas 1849530 2 1 3 genus 719 species 716 Oblitimonas alkaliphila 1697053 1 0 0 Pseudomonas 286 80 1 12312 genus 320026 species group 43470 0 9 136843 Pseudomonas fluorescens 294 1 0 species 24100 0 200450 1 Pseudomonas trivialis 2587 species 0 47878 1 Pseudomonas azotoformans 3625 species species 2100 0 Pseudomonas mandelii 75612 1 species 1850 Pseudomonas poae 200451 1 0 76758 1 Pseudomonas orientalis 0 1674 species 1986 species 0 47879 1 Pseudomonas corrugata Pseudomonas protegens 1 380021 0 species 3206 1 76761 Pseudomonas veronii 0 2342 species 2426 species 216142 1 Pseudomonas rhizosphaerae 0 species 1801 0 Pseudomonas alkylphenolica 1 237609 Pseudomonas alcaliphila 1 101564 0 species 3398 4188 species 0 1 157782 Pseudomonas parafulva species group 14445 136842 2 0 species 3788 Pseudomonas fragi 1 296 0 species 10657 0 Pseudomonas chlororaphis 1 587753 species 2778 0 Pseudomonas cremoricolorata 1 157783 1 930166 Pseudomonas brassicacearum 0 4638 species 0 8 136849 species group 29129 species 1506 0 Pseudomonas cichorii 1 36746 0 2 251698 6237 species subgroup 47877 1 Pseudomonas amygdali 0 2930 species 3307 species 0 1 29438 Pseudomonas savastanoi species 1948 Pseudomonas avellanae 1 46257 0 2310 species 0 33069 1 Pseudomonas viridiflava 3344 species 0 251701 1 Pseudomonas syringae group genomosp. 3 1 251695 0 species subgroup 12256 317 1 Pseudomonas syringae 0 12256 species 1528 no rank 2775504 1 0 0 Pseudomonas sp. Lz4W 1 1206777 species 1528 species 1547 Pseudomonas antarctica 219572 1 0 66652 no rank 0 196821 30 1910 species 1 1534110 Pseudomonas sp. DR 5-09 0 species 1209 Pseudomonas sp. SWI44 1 2083053 0 3045 species 0 1028989 1 Pseudomonas sp. StFLB209 species 2439 0 Pseudomonas sp. FGI182 1 1259844 2023 species 1 2083052 Pseudomonas sp. SWI36 0 species 2595 0 Pseudomonas sp. LH1G9 1 2083055 0 Pseudomonas sp. TCU-HL1 1 1856685 species 3134 1611770 1 Pseudomonas sp. MRSN12121 0 2957 species species 1781 Pseudomonas sp. UW4 1207075 1 0 0 2018067 1 Pseudomonas sp. FDAARGOS_380 1937 species 0 Pseudomonas sp. MYb193 1827300 1 species 1400 species 2527 0 Pseudomonas sp. TKP 1 1415630 0 1 1930532 Pseudomonas sp. CC6-YY-74 3002 species 1 1283291 Pseudomonas sp. URMO17WK12:I11 0 2599 species 1990 species 1 2069256 Pseudomonas sp. XWY-1 0 species 1224 Pseudomonas sp. HLS-6 1 2049589 0 species 2181 Pseudomonas sp. JY-Q 1 1338689 0 2763 species 1649877 1 Pseudomonas sp. CCOS 191 0 2869 species 0 1636610 1 Pseudomonas sp. PONIH3 1500686 1 Pseudomonas sp. Os17 0 2710 species 0 1500687 1 Pseudomonas sp. St29 3207 species Pseudomonas sp. SWI6 2083051 1 0 species 1128 species 2261 Pseudomonas sp. LPH1 1 1898684 0 2004 species 1 1659194 Pseudomonas sp. GR 6-02 0 species 1579 0 Pseudomonas sp. S-6-2 1 1931241 641 species 0 1981174 1 Pseudomonas sp. M30-35 0 Pseudomonas sp. ATCC 13867 1 1294143 species 4429 0 Pseudomonas sp. NC02 2067572 1 species 1935 0 69328 1 Pseudomonas sp. VLB120 1326 species 0 2083054 1 Pseudomonas sp. LG1D9 1847 species 65741 1 Pseudomonas knackmussii 0 3506 species 2901 species 1 237610 Pseudomonas psychrotolerans 0 136846 2 0 18304 species group 0 1 578833 16250 species subgroup 16250 species 0 1 316 Pseudomonas stutzeri 2054 species 1 74829 Pseudomonas balearica 0 0 244566 1 Pseudomonas lurida 1716 species Pseudomonas cerasi 1583341 1 0 species 1587 species 1026 Pseudomonas versuta 1788301 1 0 species group 42991 0 136841 6 0 1232139 1 species subgroup 4085 1 1149133 Pseudomonas furukawaii 0 4085 species Pseudomonas aeruginosa 1 287 0 species 12788 3787 species 53412 1 Pseudomonas resinovorans 0 1 300 Pseudomonas mendocina 0 10312 species 7611 species 0 1 53408 Pseudomonas citronellolis 0 Pseudomonas alcaligenes 43263 1 species 4408 104087 1 Pseudomonas frederiksbergensis 0 5360 species 1853130 1 Pseudomonas silesiensis 0 1496 species 0 136845 6 49109 species group species 4285 Pseudomonas fulva 1 47880 0 species 3136 Pseudomonas oryzihabitans 1 47885 0 species 2116 0 Pseudomonas plecoglossicida 70775 1 Pseudomonas mosselii 1 78327 0 species 5264 species 6377 0 Pseudomonas monteilii 1 76759 27931 species 1 303 Pseudomonas putida 0 1662 species 1 312306 Pseudomonas entomophila 0 species 3584 0 Pseudomonas koreensis 1 198620 0 3 351 subfamily 8613 3 352 Azotobacter 0 8613 genus 67 1 5740 species 0 1 353 Azotobacter chroococcum species 2806 Azotobacter vinelandii 354 1 0 922 1 73403 order 0 135619 69 Oceanospirillales family 1669 1 10 Hahellaceae 3 224379 0 0 158481 2 Hahella 5 1 1659 genus 0 158327 1 Hahella chejuensis 1654 species 0 9 224372 Alcanivoracaceae 117 1 13593 family 0 Alcanivorax 6 59753 1 259 genus 11301 Alcanivorax pacificus 1306787 1 0 species 3584 1 2638842 0 915 no rank 0 Alcanivorax sp. NBRC 101098 1113728 1 species 915 1 285091 Alcanivorax dieselolei 0 2699 species 0 59754 1 Alcanivorax borkumensis 911 species Alcanivorax xenomutans 1 1094342 0 species 2933 2025617 2 Ketobacter 0 2175 genus 30 1 species 2145 0 Ketobacter alkanivorans 1917421 1 4 1 1612 family 0 1920240 6 Kangiellaceae 0 Kangiella 261963 5 1 44 genus 1608 species 560 Kangiella geojedonensis 914150 1 0 species 351 0 Kangiella koreensis 1 261964 Kangiella sediminilitoris 1144748 1 0 species 365 species 288 0 Kangiella profundi 1 1561924 0 Oceanospirillaceae 135620 13 1 155 family 7952 1 2 genus 699 0 Oleispira 2 188907 Oleispira antarctica 1 188908 0 species 697 1537406 2 Bacterioplanes 0 2080 genus 61 1 Bacterioplanes sanyensis 1249553 1 0 species 2019 Thalassolituus 187492 2 0 genus 490 1 1 489 species 187493 1 Thalassolituus oleivorans 0 4 28253 Marinomonas 0 1865 genus 30 1 571 species 1 119864 Marinomonas mediterranea 0 no rank 601 1 196814 0 species 601 Marinomonas sp. MWYL1 400668 1 0 663 species 0 936476 1 Marinomonas posidonica 66 1 2663 genus 0 48075 2 Marinobacterium Marinobacterium aestuarii 1 1821621 0 species 2597 4 1 2919 family 0 5 255527 Saccharospirillaceae 1 7 genus 1240 0 Reinekea 2 230494 0 1 1336806 Reinekea forsetii 1233 species 7 1 1675 genus 0 1445504 2 Gynuella species 1668 Gynuella sunshinyii 1445505 1 0 0 2 191033 family 841 28 1 841 genus 0 141450 2 Oleiphilus 813 species 0 141451 1 Oleiphilus messinensis 1 561 family 43895 0 Halomonadaceae 28256 30 1668 genus 52 1 42054 2 Chromohalobacter 0 0 158080 1 Chromohalobacter salexigens 1616 species 0 Halomonas 15 2745 1 461 genus 28515 1367 species 1178482 1 Halomonas huangheensis 0 no rank 14537 8 2609666 0 1 2136172 Halomonas sp. SF2003 0 2779 species 3243 species 0 1883416 1 Halomonas sp. 1513 species 1377 0 Halomonas sp. KO116 1 1504981 0 1971364 1 Halomonas sp. GT 1044 species species 1668 0 Halomonas sp. 'Soap Lake #6' 1 1949203 Halomonas sp. GFAJ-1 1 1118153 0 species 816 1 1962264 Halomonas sp. 'Soap Lake #7' 0 1668 species 1942 species 0 1 1610576 Halomonas sp. R57-5 2395 species 0 1 507626 Halomonas chromatireducens Halomonas campaniensis 213554 1 0 species 752 2921 species 0 115561 1 Halomonas hydrothermalis species 2912 0 Halomonas beimenensis 1 475662 3170 species 0 1897729 1 Halomonas aestuarii 0 2 204286 Cobetia 38 1 4036 genus 0 Cobetia marina 28258 1 species 3998 1756 genus 35 1 376488 2 Halotalea 0 1721 species 376489 1 Halotalea alkalilenta 0 114403 3 0 92 no rank 1 1495768 0 genus 42 species 42 0 Candidatus Evansia muelleri 1495769 1 1 114185 0 15 genus 0 1 114186 Candidatus Carsonella ruddii 15 species 1 235572 0 35 genus 0 Candidatus Portiera aleyrodidarum 1 91844 species 35 0 404432 2 Salinicola 54 1 2637 genus 2583 species 1 1771309 Salinicola tamaricis 0 101 1 4630 genus 0 3 504090 Kushneria 0 Kushneria konosiri 1 698828 species 2712 Kushneria marisflavi 157779 1 0 species 1817 0 Pasteurellales 32 135625 1 16 order 27242 27226 family 991 1 31 712 Pasteurellaceae 0 0 3 416916 Aggregatibacter 31 1 2493 genus 0 Aggregatibacter actinomycetemcomitans 714 1 species 1116 species 1346 Aggregatibacter aphrophilus 732 1 0 Gallibacterium 155493 2 0 genus 727 1 3 724 species 0 1 750 Gallibacterium anatis 0 Glaesserella 2094023 2 1 1 genus 650 species 649 0 Glaesserella parasuis 738 1 476528 2 Bibersteinia 0 1371 genus 22 1 47735 1 Bibersteinia trehalosi 0 1349 species 0 4 75984 Mannheimia 9 1 2166 genus species 715 0 Mannheimia varigena 85404 1 species 997 0 Mannheimia haemolytica 1 75985 0 2645054 1 no rank 445 0 Mannheimia sp. USDA-ARS-USMARC-1261 1432056 1 species 445 0 Basfia 2 697331 1 1 genus 1114 1113 species 0 157673 1 [Mannheimia] succiniciproducens 0 214906 1 748 genus 731 1 Histophilus somni 0 748 species Haemophilus 6 724 0 genus 12164 1 18 [Haemophilus] ducreyi 730 1 0 species 634 0 729 1 Haemophilus parainfluenzae 7962 species 0 2609962 1 no rank 542 species 542 Haemophilus sp. oral taxon 036 712310 1 0 0 1 727 Haemophilus influenzae 2011 species Haemophilus pittmaniae 249188 1 0 species 997 1 1 1280 genus 0 745 3 Pasteurella 244 species 0 754 1 Pasteurella dagmatis 1035 species 0 747 1 Pasteurella multocida Actinobacillus 5 713 0 genus 3522 1 25 species 1332 0 Actinobacillus pleuropneumoniae 715 1 0 Actinobacillus suis 1 716 species 690 786 species 1 67854 Actinobacillus succinogenes 0 0 718 1 Actinobacillus equuli 689 species 1 12 order 33258 0 Vibrionales 44 135623 43 641 Vibrionaceae 0 33246 family 326 1 0 Grimontia 246861 2 1 19 genus 921 Grimontia hollisae 673 1 0 species 902 genus 328 1 1 Paraphotobacterium 2042066 2 0 species 327 Paraphotobacterium marinum 1755811 1 0 616 1 26738 genus 0 30 662 Vibrio 322 species 212663 1 Vibrio tasmaniensis 0 1600 species 676 1 Vibrio fluvialis 0 species 471 0 Vibrio hyugaensis 1 1534743 687 1 Vibrio gazogenes 0 491 species Vibrio coralliilyticus 190893 1 0 species 1560 2614977 2 0 1035 no rank species 522 0 Vibrio sp. 2521-89 1 2014742 513 species 1 1116375 Vibrio sp. EJY3 0 species 1166 Vibrio cholerae 666 1 0 species 1148 0 Vibrio furnissii 29494 1 717610 10 0 9145 species group 645 species 1 696485 Vibrio owensii 0 582 species 1 190895 Vibrio rotiferianus 0 0 2315253 2 species subgroup 1503 1 50719 Vibrio diabolicus 0 971 species 532 species 0 150340 1 Vibrio antiquarius 0 1 680 Vibrio campbellii 1009 species species 1253 0 Vibrio parahaemolyticus 1 670 species 1117 0 Vibrio natriegens 691 1 0 Vibrio harveyi 1 669 species 1023 species 1632 Vibrio alginolyticus 663 1 0 Vibrio jasicida 1 766224 0 species 381 0 1 55601 Vibrio anguillarum 1069 species species 420 Vibrio qinghaiensis 1 2025808 0 2490 species 672 1 Vibrio vulnificus 0 species 518 Vibrio tritonius 1435069 1 0 0 1 1891919 546 species group 0 1 29498 Vibrio tubiashii 546 species 819 species 0 1 45658 Vibrio scophthalmi 0 Vibrio tapetis 1 52443 species 572 species 680 Vibrio nigripulchritudo 28173 1 0 species 867 Vibrio breoganii 1 553239 0 674 1 Vibrio mimicus 0 1203 species 12 1 1387 genus 0 4 511678 Aliivibrio 0 Aliivibrio fischeri 1 668 species 563 431 species 80852 1 Aliivibrio wodanis 0 Aliivibrio salmonicida 40269 1 0 species 381 2 1 3546 genus 0 657 4 Photobacterium Photobacterium damselae 38293 1 0 species 786 824 species 0 1 74109 Photobacterium profundum 1934 species 0 1295392 1 Photobacterium gaetbulicola 14 1 496 order 0 135615 3 Cardiobacteriales 2 868 0 family 482 482 genus 33 1 2 869 Dichelobacter 0 species 449 0 Dichelobacter nodosus 1 870 1 3 order 5710 0 Legionellales 118969 20 family 824 1 1 Coxiellaceae 5 118968 0 1 1 genus 675 0 Coxiella 776 3 566 species 777 1 Coxiella burnetii 0 108 no rank 1 2676648 0 species 108 Coxiella endosymbiont of Amblyomma americanum 1 325775 0 1 134284 0 148 no rank 0 Coxiella-like endosymbiont 1592897 1 species 148 4883 family 9 1 444 14 Legionellaceae 0 14 1 4594 genus 0 445 12 Legionella species 248 Legionella oakridgensis 1 29423 0 species 293 Legionella hackeliae 1 449 0 456 species 1 450 Legionella longbeachae 0 210 species 1 28087 Legionella sainthelensi 0 407 species 452 1 Legionella spiritensis 0 219 species 0 1 45067 Legionella lansingensis Legionella waltersii 1 66969 0 species 307 Legionella pneumophila 446 1 0 species 1770 224 species 0 1 96230 Legionella fallonii 126 species 0 1 2005262 Legionella endosymbiont of Polyplax serrata species 320 Legionella clemsonensis 1867846 1 0 1 465 0 genus 280 species 280 0 Tatlockia micdadei 451 1 Aeromonadales 135624 29 0 order 89706 1 372 1 561 family 89334 0 Aeromonadaceae 84642 28 0 129577 2 Oceanimonas 42 1 4123 genus 0 2636315 1 no rank 4081 0 Oceanimonas sp. GK1 511062 1 species 4081 Aeromonas 18 642 0 genus 77891 1 4876 7333 species 654 1 Aeromonas veronii 0 0 Aeromonas caviae 648 1 species 2063 19065 species 0 644 1 Aeromonas hydrophila 0 8 257493 23969 no rank 2582 species 1 1636608 Aeromonas sp. ASNIH3 0 species 3078 0 Aeromonas sp. CU5 1 2033033 species 3399 0 Aeromonas sp. ASNIH5 1 1758179 Aeromonas sp. ASNIH4 1636609 1 0 species 4394 1 2033032 Aeromonas sp. CA23 0 3441 species 0 1636606 1 Aeromonas sp. ASNIH1 2345 species 2220 species 1920107 1 Aeromonas sp. ASNIH7 0 2510 species 1636607 1 Aeromonas sp. ASNIH2 0 Aeromonas rivipollensis 1 948519 0 species 2870 0 1 651 Aeromonas media 2537 species 3538 species 0 196024 1 Aeromonas dhakensis 2342 species 0 1 652 Aeromonas schubertii Aeromonas salmonicida 645 1 0 species 5639 3659 species 0 558964 1 Aeromonas aquatica 225143 3 Oceanisphaera 0 1311 genus 1 1 species 776 Oceanisphaera profunda 1416627 1 0 1 1903694 Oceanisphaera sp. AMac2203 0 534 species 2 43947 Tolumonas 0 987 genus 12 1 0 Tolumonas auensis 43948 1 species 975 347533 2 Zobellella 0 4461 genus 37 1 0 Zobellella denitrificans 347534 1 species 4424 0 72273 34 Thiotrichales 12 1 10359 order 14 34064 Francisellaceae 0 5733 family 4 1 0 Francisella 262 12 1 49 genus 5517 Francisella persica 954 1 0 species 212 1 573569 Francisella sp. TX077308 0 396 species species 681 Francisella philomiragia 28110 1 0 species 417 Francisella noatunensis 1 657445 0 0 2 2610885 no rank 715 0 475375 1 Francisella sp. MA067296 220 species species 495 0 Francisella sp. FSC1006 1547445 1 Francisella sp. CA97-1460 1 1542390 0 species 355 0 1 263 Francisella tularensis 1476 species 510 species 0 573570 1 Francisella sp. TX077310 219 species 0 1 549298 Francisella halioticida species 487 0 Francisella hispaniensis 1 622488 212 genus 0 1 1869285 Allofrancisella guangzhouensis 594679 1 0 species 212 653 family 8 1 4 135617 Thiotrichaceae 0 0 1 40751 genus 219 0 1 40754 Thioploca ingrica 219 species 426 genus 7 1 2 1021 Beggiatoa 0 419 species 0 1 288004 Beggiatoa leptomitoformis 3961 family 22 1 135616 15 Piscirickettsiaceae 0 2 1 531 genus 0 3 933 Thiomicrospira species 248 0 Thiomicrospira aerophila 92245 1 1 147268 Thiomicrospira cyclica 0 281 species 1 30 genus 1233 0 Methylophaga 40222 3 0 Methylophaga nitratireducenticrescens 754476 1 species 712 0 Methylophaga frappieri 1 754477 species 491 26 1 293 genus 0 2 28884 Hydrogenovibrio species 267 0 Hydrogenovibrio crunogenus 39765 1 Piscirickettsia 2 1237 0 genus 690 1 2 species 688 Piscirickettsia salmonis 1238 1 0 4 34067 Cycloclasticus 0 1192 genus 10 1 Cycloclasticus zancles 1 1329899 0 species 456 726 no rank 2621467 2 0 298 species 0 385025 1 Cycloclasticus sp. P1 species 428 0 Cycloclasticus sp. PY97N 1 728003 6268 no rank 118884 11 0 1882 genus 1 1 1608298 2 Thiolapillus 0 species 1881 Thiolapillus brandeum 1076588 1 0 1032 genus 0 1 1524249 1 1249552 Pseudohongiella spirulinae 0 1032 species 0 1 198346 clade 486 0 186490 1 Candidatus Baumannia cicadellinicola 486 species 379 genus 655184 2 0 species 141 0 Candidatus Thioglobus singularis 1427364 1 1705394 1 Candidatus Thioglobus autotrophicus 0 238 species 1903 genus 5 1 2 349742 Sedimenticola 0 species 1898 0 Sedimenticola thiotaurini 1543721 1 32036 3 0 586 clade 0 1 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 180 species 0 1541743 1 139 genus 0 Candidatus Ruthia magnifica 1 386487 species 139 267 species 0 410330 1 Calyptogena okutanii thioautotrophic gill symbiont 0 2 33811 no rank 4737 0 1 83406 gamma proteobacterium HdN1 2630 species 0 1248727 1 endosymbiont of unidentified scaly snail isolate Monju 2107 species 961 order 1 1 1240482 5 Orbales 0 0 Orbaceae 4 1240483 1 166 family 960 0 1193503 1 genus 412 412 species 1196095 1 Gilliamella apicola 0 382 genus 3 1 2 1335631 Frischella 0 species 379 0 Frischella perrara 1 1267021 order 10563 1 172 Methylococcales 13 135618 0 Methylococcaceae 12 403 0 family 10391 1 95 1 1 genus 1334 0 Methylovulum 762296 2 species 1333 Methylovulum psychrotolerans 1 1704499 0 416 5 Methylomonas 0 5713 genus 102 1 0 421 1 Methylomonas methanica 999 species 0 2608980 1 2225 no rank 0 1727196 1 Methylomonas sp. DH-1 2225 species 1385 species 0 1 702114 Methylomonas koyamae 0 Methylomonas denitrificans 1538553 1 species 1002 0 Methylomicrobium 2 39773 1 24 genus 1314 0 Methylomicrobium alcaliphilum 271065 1 species 1290 1935 genus 55 1 413 2 Methylococcus 0 0 Methylococcus capsulatus 1 414 species 1880 69098 order 252 1 105 135622 Alteromonadales 0 21 1 2313 family 0 267892 3 Ferrimonadaceae 2292 genus 29 1 44011 2 Ferrimonas 0 species 2263 0 Ferrimonas balearica 44012 1 0 29 72275 Alteromonadaceae 114 1 30046 family 0 1 1621534 genus 471 species 471 Paraglaciecola psychrophila 326544 1 0 1 4 genus 1052 0 Glaciecola 89404 3 0 2618684 1 no rank 576 1 983545 Glaciecola sp. 4H-3-7+YE-5 0 576 species species 472 0 Glaciecola nitratireducens 300231 1 226 10 Alteromonas 0 5184 genus 38 1 0 Alteromonas stellipolaris 233316 1 species 609 no rank 1072 2614992 3 0 species 534 Alteromonas sp. Mac1 1777491 1 0 species 221 0 Alteromonas sp. MB-3u-76 2058133 1 317 species 1917158 1 Alteromonas sp. RW2A1 0 0 Alteromonas addita 287094 1 species 492 Alteromonas australica 1 589873 0 species 326 Alteromonas naphthalenivorans 715451 1 0 species 295 species 1153 0 Alteromonas mediterranea 1 314275 species 1199 Alteromonas macleodii 1 28108 0 2742 10 Marinobacter 0 17890 genus 285 1 species 3151 0 Marinobacter salarius 1 1420917 1256 species 0 330734 1 Marinobacter psychrophilus 0 3 83889 6246 no rank species 2748 Marinobacter sp. LQ44 1 1749259 0 species 2007 Marinobacter sp. CP1 1671721 1 0 Marinobacter sp. BSs20148 1 490759 0 species 1491 1874317 1 Marinobacter salinus 0 1186 species species 2259 0 Marinobacter adhaerens 1 1033846 species 1200 Marinobacter similis 1 1420916 0 0 2743 1 Marinobacter hydrocarbonoclasticus 2307 species Agarivorans 261825 2 0 genus 2395 1 4 0 680279 1 Agarivorans gilvus 2391 species genus 2940 1 1 Lacimicrobium 1751872 2 0 2939 species 1526571 1 Lacimicrobium alkaliphilum 0 1 9 family 2300 0 Idiomarinaceae 6 267893 2291 genus 44 1 5 135575 Idiomarina 0 741 species 0 135577 1 Idiomarina loihiensis 2 2614829 0 1187 no rank 0 Idiomarina sp. OT37-5b 2100422 1 species 635 552 species 0 1 2055892 Idiomarina sp. X4 0 Idiomarina piscisalsi 1096243 1 species 319 79 1 10311 family 0 267888 25 Pseudoalteromonadaceae 0 24 53246 Pseudoalteromonas 241 1 10232 genus 0 1 152297 Pseudoalteromonas issachenkonii 525 species 421 species 0 1 166935 Pseudoalteromonas translucida species 390 Pseudoalteromonas haloplanktis 228 1 0 species 843 Pseudoalteromonas spongiae 1 298657 0 321 species 1 161398 Pseudoalteromonas phenolica 0 1 43658 Pseudoalteromonas rubra 0 493 species 408 species 1 247523 Pseudoalteromonas aliena 0 species 469 Pseudoalteromonas tunicata 314281 1 0 species 415 Pseudoalteromonas arctica 394751 1 0 581 species 1 288 Pseudoalteromonas atlantica 0 species 334 Pseudoalteromonas piscicida 1 43662 0 species 431 Pseudoalteromonas nigrifaciens 1 28109 0 no rank 2265 194690 5 0 species 348 0 Pseudoalteromonas sp. 13-15 1 1761891 species 441 0 Pseudoalteromonas sp. Bsw20308 1 283699 0 1514074 1 Pseudoalteromonas sp. NC201 337 species 600 species 0 1 234831 Pseudoalteromonas sp. SM9913 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 1720343 0 species 539 43659 1 Pseudoalteromonas tetraodonis 0 460 species 298 species 43657 1 Pseudoalteromonas luteoviolacea 0 species 448 Pseudoalteromonas piratica 1 1348114 0 1 176102 Pseudoalteromonas agarivorans 0 313 species species 381 Pseudoalteromonas espejiana 28107 1 0 species 195 Pseudoalteromonas marina 267375 1 0 267889 9 Colwelliaceae 0 5108 family 6 1 Thalassotalea 2 1518149 0 genus 482 1 1 species 481 0 Thalassotalea crassostreae 1 1763536 4620 genus 58 1 6 28228 Colwellia 0 no rank 2845 0 196834 3 species 1106 Colwellia sp. PAMC 21821 1 1816219 0 Colwellia sp. MT41 58049 1 0 species 997 species 742 0 Colwellia sp. PAMC 20917 1 1816218 species 1019 Colwellia beringensis 1967665 1 0 28229 1 Colwellia psychrerythraea 0 698 species 267891 3 Moritellaceae 0 587 family 3 1 0 Moritella 2 58050 1 4 genus 584 0 1 80854 Moritella viscosa 580 species 59 1 17221 family 0 267890 25 Shewanellaceae 301 1 17162 genus 0 22 24 Shewanella no rank 3855 196818 6 0 94122 1 Shewanella sp. ANA-3 0 736 species 400 species 0 1 2029986 Shewanella sp. WE21 0 Shewanella sp. Pdp11 2059264 1 species 707 772 species 0 351745 1 Shewanella sp. W3-18-1 0 1 60481 Shewanella sp. MR-7 619 species 621 species 0 1 60480 Shewanella sp. MR-4 0 Shewanella marisflavi 260364 1 species 621 0 24 1 Shewanella putrefaciens 831 species Shewanella piezotolerans 1 404011 0 species 623 506 species 0 70863 1 Shewanella oneidensis species 423 Shewanella japonica 1 93973 0 1636 species 1 60478 Shewanella amazonensis 0 0 Shewanella sediminis 271097 1 species 470 0 62322 1 Shewanella baltica 1468 species species 863 Shewanella frigidimarina 1 56812 0 173 species 1 192073 Shewanella denitrificans 0 1534 species 0 1 359303 Shewanella loihica species 933 0 Shewanella psychrophila 225848 1 673 species 1 271098 Shewanella halifaxensis 0 0 Shewanella pealeana 70864 1 species 366 1 60217 Shewanella violacea 0 516 species 0 1 2018305 Shewanella bicestrii 736 species species 634 Shewanella woodyi 60961 1 0 family 960 1 3 Psychromonadaceae 267894 4 0 0 3 67572 Psychromonas 2 1 957 genus 340 no rank 1 2614957 0 340 species 314282 1 Psychromonas sp. CNPT3 0 0 Psychromonas ingrahamii 1 357794 species 615 0 54 135614 Xanthomonadales 1323 1 143111 order family 24505 1 324 Rhodanobacteraceae 1775411 14 0 Dyella 4 231454 0 genus 11446 1 203 Dyella thiooxydans 445710 1 0 species 4406 1379159 1 Dyella jiangningensis 0 3210 species 1 231455 Dyella japonica 0 3627 species 0 Frateuria 70411 2 1 22 genus 2341 0 Frateuria aurantia 1 81475 species 2319 genus 1544 1 2233801 0 species 1544 Xanthomonadales bacterium D13 1 2021234 0 3051 genus 38 1 2 323413 Dokdonella 0 3013 species 0 323415 1 Dokdonella koreensis 3784 genus 16 1 75309 2 Rhodanobacter 0 Rhodanobacter denitrificans 666685 1 0 species 3768 19 1 2015 genus 0 242605 2 Luteibacter 0 Luteibacter rhizovicinus 1 242606 species 1996 0 39 32033 Xanthomonadaceae 1407 1 117283 family Stenotrophomonas 40323 9 0 genus 45256 1 1049 Stenotrophomonas acidaminiphila 1 128780 0 species 5360 2975 species 0 1 83617 Stenotrophomonas nitritireducens 20095 species group 995085 1 0 Stenotrophomonas maltophilia 1 40324 0 species 20095 4 196198 0 12836 no rank 2590 species 1793721 1 Stenotrophomonas sp. KCTC 12332 0 0 Stenotrophomonas sp. MYb57 1827305 1 species 3386 0 2005046 1 Stenotrophomonas sp. WZN-1 3139 species 3721 species 1904944 1 Stenotrophomonas sp. LM091 0 2941 species 216778 1 Stenotrophomonas rhizophila 0 genus 9040 1 129 Pseudoxanthomonas 83618 3 0 species 5492 Pseudoxanthomonas suwonensis 314722 1 0 0 1 415229 Pseudoxanthomonas spadix 3419 species 44112 genus 2284 1 17 338 Xanthomonas 0 Xanthomonas translucens 1 343 0 species 3841 0 48664 1 Xanthomonas fragariae 1260 species 0 Xanthomonas vasicola 56459 1 species 1500 species 3872 Xanthomonas sacchari 1 56458 0 0 Xanthomonas perforans 442694 1 species 1964 species 1885 Xanthomonas hortorum 56454 1 0 0 Xanthomonas axonopodis 53413 1 species 1733 species 1311 0 Xanthomonas phaseoli 1 1985254 1538 species 0 1 456327 Xanthomonas euvesicatoria Xanthomonas alfalfae 1 366650 0 species 1576 Xanthomonas campestris 1 339 0 species 5710 2496 species 0 56460 1 Xanthomonas vesicatoria 3487 species 347 1 Xanthomonas oryzae 0 0 Xanthomonas albilineans 29447 1 species 1012 0 643453 2 species group 8643 366648 1 Xanthomonas fuscans 0 2305 species 6338 species 0 346 1 Xanthomonas citri 1323 genus 1 1 2370 2 Xylella 0 Xylella fastidiosa 1 2371 0 species 1322 Lysobacter 68 5 0 genus 14305 1 295 0 262324 1 Lysobacter gummosus 3155 species Lysobacter enzymogenes 69 1 0 species 3028 Lysobacter antibioticus 84531 1 0 species 3051 Lysobacter capsici 435897 1 0 species 4776 0 2 83614 Luteimonas 14 1 1840 genus species 1826 Luteimonas sp. 100111 1 2006110 0 1934945 4 Immundisolibacterales 0 3984 order 167 1 1934946 3 Immundisolibacteraceae 0 3817 family 156 1 1 55 genus 3661 0 Immundisolibacter 1934947 2 Immundisolibacter cernigliae 1810504 1 0 species 3606 1 79 order 22392 0 Cellvibrionales 30 1706369 10833 family 52 1 13 1706371 Cellvibrionaceae 0 2 316625 Saccharophagus 0 1249 genus 2 1 86304 1 Saccharophagus degradans 0 1247 species genus 1281 1 5 Teredinibacter 2 2425 0 1276 species 0 2426 1 Teredinibacter turnerae 0 Agarilytica 2 2036021 1 6 genus 466 species 460 Agarilytica rhodophyticola 1 1737490 0 Cellvibrio 10 4 0 genus 5215 1 10 0 2624793 2 3514 no rank 1031 species 1 1945512 Cellvibrio sp. PSBB023 0 species 2483 0 Cellvibrio sp. PSBB006 1 1987723 species 1691 0 Cellvibrio japonicus 155077 1 Simiduia 2 447467 0 genus 2570 1 17 Simiduia agarivorans 1 447471 0 species 2553 Halieaceae 1706372 4 0 family 2338 1 13 Halioglobus 1217416 3 0 genus 2325 1 12 0 930806 1 Halioglobus pacificus 958 species 930805 1 Halioglobus japonicus 0 1355 species 1706375 7 Spongiibacteraceae 0 2745 family 125 1 2 1434050 Zhongshania 0 1125 genus 7 1 species 1118 0 Zhongshania aliphaticivorans 1 1470434 2 630749 Spongiibacter 0 660 genus 6 1 no rank 654 0 1 2631504 654 species 0 1 1620392 Spongiibacter sp. IMCC21906 genus 835 1 6 Oceanicoccus 1084558 2 0 0 Oceanicoccus sagamiensis 716816 1 species 829 1 61 family 6397 0 Microbulbiferaceae 5 1706373 0 4 48073 Microbulbifer 28 1 6336 genus 2086 species 1769779 1 Microbulbifer aggregans 0 260552 1 Microbulbifer agarilyticus 0 2326 species Microbulbifer thermotolerans 252514 1 0 species 1896 3071 1 862120 class 0 560 28211 Alphaproteobacteria 0 Rhodobacterales 93 204455 1 995 order 161149 Rhodobacteraceae 31989 92 0 family 160154 1 2921 2594 genus 11 1 53945 4 Octadecabacter 0 species 873 Octadecabacter arcticus 53946 1 0 0 1 1458307 Octadecabacter temperatus 596 species 1114 species 0 1217908 1 Octadecabacter antarcticus 3614 genus 15 1 2 1097466 Defluviimonas 0 3599 species 1 1335048 Defluviimonas alba 0 56 1 3698 genus 0 58842 2 Sagittula 0 1 2624628 no rank 3642 Sagittula sp. P11 1 2009329 0 species 3642 982 genus 0 1 119541 441209 1 Rhodobaca barguzinensis 0 982 species 1 118 genus 10074 0 Rhodovulum 4 34008 2 2631432 0 4688 no rank Rhodovulum sp. MB263 308754 1 0 species 2560 0 Rhodovulum sp. P5 1564506 1 species 2128 species 5268 0 Rhodovulum sulfidophilum 1 35806 genus 1888 1 6 Roseibacterium 2 159345 0 0 Roseibacterium elongatum 159346 1 species 1882 3 1 2078 genus 0 2 188905 Jannaschia 0 1 2645469 2075 no rank 0 Jannaschia sp. CCS1 1 290400 species 2075 1 1649279 0 genus 2047 species 2047 Ruegeria mobilis 1 379347 0 1 595 genus 23249 0 Paracoccus 9 265 246570 1 0 2349 no rank 1 1529068 Paracoccus sp. BM15 0 2349 species 0 Paracoccus contaminans 1 1945662 species 1928 species 2610 Paracoccus aminovorans 1 34004 0 0 Paracoccus sp. CBA4604 2065379 1 species 2956 0 Paracoccus denitrificans 1 266 species 4072 1 147645 Paracoccus yeei 0 3281 species 2133 species 0 1 34003 Paracoccus aminophilus 3325 species 1077935 1 Paracoccus zhejiangensis 0 0 Leisingera 191028 2 1 89 genus 4397 133924 1 Leisingera methylohalidivorans 0 4308 species 2838 no rank 0 58840 2 species 1931 0 Rhodobacteraceae bacterium QY30 2033435 1 0 1904441 1 Rhodobacteraceae bacterium 907 species 7572 genus 79 1 478070 4 Labrenzia 0 5182 no rank 2 2648686 0 Labrenzia sp. VG12 2021862 1 0 species 2665 2517 species 0 1 1674922 Labrenzia sp. CP4 0 1 187304 Labrenzia aggregata 2311 species 245186 1 Loktanella 0 3 genus 5387 genus 9 1 97050 3 Ruegeria 0 no rank 1893 0 1 2625375 1893 species 292414 1 Ruegeria sp. TM1040 0 Ruegeria pomeroyi 89184 1 0 species 3485 2 1284657 Planktomarina 0 599 genus 10 1 0 1 1284658 Planktomarina temperata 589 species 0 227873 2 Pannonibacter 49 1 5448 genus 5399 species 0 1 121719 Pannonibacter phragmitetus 205 1 16282 genus 0 302485 5 Phaeobacter species 4375 Phaeobacter gallaeciensis 60890 1 0 1750 species 1844006 1 Phaeobacter porticola 0 species 4193 Phaeobacter piscinae 1580596 1 0 0 221822 1 Phaeobacter inhibens 5759 species Ketogulonicigenium 92944 3 0 genus 3811 1 19 2172 species 1 92945 Ketogulonicigenium vulgare 0 Ketogulonicigenium robustum 1 92947 0 species 1620 Roseobacter 3 2433 0 genus 3123 1 1 1568 species 0 1 42443 Roseobacter litoralis 1554 species 2434 1 Roseobacter denitrificans 0 Marivivens 2 1759396 0 genus 754 1 7 747 no rank 2622455 1 0 747 species 0 1 1920883 Marivivens sp. JLT3646 2544 genus 3 1 74030 2 Roseovarius 0 0 1 215743 Roseovarius mucosus 2541 species 2 1609958 Confluentimicrobium 0 3345 genus 13 1 0 1 2643318 3332 no rank 3332 species 0 1609966 1 Confluentimicrobium sp. EMB200-NS6 8557 genus 29 1 875170 5 Celeribacter 0 2173 species 0 1 1411902 Celeribacter manganoxidans 3097 species 1208324 1 Celeribacter indicus 0 0 Celeribacter ethanolicus 1 1758178 species 2055 0 1 1397108 Celeribacter marinus 1203 species 6551 genus 0 2 263377 no rank 3105 2640570 1 0 species 3105 0 Yangia sp. CCB-MM3 1792508 1 Thiobacimonas profunda 1229727 1 0 species 3446 2259 genus 19 1 309512 2 Dinoroseobacter 0 species 2240 0 Dinoroseobacter shibae 215813 1 1 11 genus 4643 0 Sulfitobacter 3 60136 Sulfitobacter pseudonitzschiae 1 1402135 0 species 2854 1 196795 0 no rank 1778 1917485 1 Sulfitobacter sp. AM1-D1 0 1778 species 1 1 genus 1681 0 Tateyamaria 2 299261 1680 species 1 299262 Tateyamaria omphalii 0 1060 5 Rhodobacter 0 13347 genus 155 1 196779 2 0 no rank 3637 2158 species 0 2033869 1 Rhodobacter sp. CZR27 species 1479 0 Rhodobacter sp. LPB0142 1 1850250 6522 species 0 1 1063 Rhodobacter sphaeroides species 3033 Rhodobacter capsulatus 1061 1 0 Antarctobacter 74032 2 0 genus 1929 1 6 species 1923 0 Antarctobacter heliothermus 74033 1 2 367771 Marinovum 0 3559 genus 7 1 0 Marinovum algicola 1 42444 species 3552 1579315 2 Halocynthiibacter 0 763 genus 1 1 0 Halocynthiibacter arcticus 1579316 1 species 762 Pelagibaca 2 360528 0 genus 2752 1 30 2722 species 1 1250539 Pelagibaca abyssi 0 genus 22 0 Thalassococcus 1 436357 2211641 1 0 genus 2529 2529 species 0 245188 1 Loktanella vestfoldensis genus 2314 1 8 Thioclava 285107 2 0 1 1915078 Thioclava nitratireducens 0 2306 species order 130508 1 882 Sphingomonadales 204457 82 0 27693 family 491 1 335929 22 Erythrobacteraceae 0 0 2800685 1 1258 genus 0 543877 1 Altererythrobacter marensis 1258 species 0 361177 4 Altererythrobacter 248 1 3942 genus 0 361183 1 Altererythrobacter epoxidivorans 1494 species 0 1267766 1 Altererythrobacter atlanticus 1598 species species 602 Altererythrobacter ishigakiensis 476157 1 0 1 2800682 0 genus 1782 1782 species 1 645517 Altererythrobacter namhicola 0 0 2 2800686 genus 2047 692370 1 Altererythrobacter dongtanensis 0 1106 species Altererythrobacter mangrovi 1 1982042 0 species 941 genus 3235 2 2800681 0 species 2134 0 Erythrobacter gangjinensis 502682 1 1101 species 1648404 1 Erythrobacter atlanticus 0 0 3 1295327 Croceicoccus 95 1 4205 genus 0 Croceicoccus marinus 1 450378 species 2411 Croceicoccus naphthovorans 1348774 1 0 species 1699 2596 genus 0 2 1855416 0 1 266951 Erythrobacter seohaensis 1191 species species 1405 0 Erythrobacter flavus 1 192812 no rank 8137 2800788 6 0 Erythrobacter 3 1041 0 genus 4602 1 111 species 3041 0 Erythrobacter litoralis 1 39960 1450 species 0 1112 1 Porphyrobacter neustonensis 100 1 3535 genus 0 1111 3 Porphyrobacter 2683265 2 0 3435 no rank 0 1 1896196 Porphyrobacter sp. LM 6 1734 species Porphyrobacter HT-58-2 1 2023229 0 species 1701 0 Sphingomonadaceae 59 41297 1 1528 family 101933 Novosphingobium 165696 5 0 genus 8547 1 101 1 48935 Novosphingobium aromaticivorans 0 1989 species Novosphingobium resinovorum 1 158500 0 species 2790 no rank 1857 0 1 2644732 species 1857 0 Novosphingobium sp. PP1Y 702113 1 species 1810 0 Novosphingobium pentaromativorans 205844 1 0 Sphingomonas 15 13687 1 441 genus 31402 0 6 196159 13478 no rank 1722 species 0 1 1938607 Sphingomonas sp. LM7 0 Sphingomonas sp. NIC1 1961362 1 species 2363 1030157 1 Sphingomonas sp. KC8 0 2022 species species 1644 0 Sphingomonas sp. Cra20 1327635 1 species 2625 Sphingomonas sp. LK11 1 1390395 0 745310 1 Sphingomonas sp. MM-1 0 3102 species species 2434 Sphingomonas taxi 1549858 1 0 species 1789 0 Sphingomonas koreensis 93064 1 0 Sphingomonas sanxanigenens 1 397260 species 3114 0 Sphingomonas wittichii 160791 2 1 1821 species 3968 0 Sphingomonas sp. DC-6 1283312 1 strain 2147 1675 species 0 1 1609977 Sphingomonas hengshuiensis 1 1560345 Sphingomonas panacis 0 2159 species 0 Sphingomonas melonis 1 152682 species 2344 2709685 1 0 genus 534 0 Sphingorhabdus flavimaris 266812 1 species 534 0 Blastomonas 2 150203 1 13 genus 1867 no rank 1854 0 2626550 1 1854 species 0 1842535 1 Blastomonas sp. RAC04 genus 1452 1 16 Citromicrobium 2 72173 0 0 2630544 1 no rank 1436 1436 species 0 1634516 1 Citromicrobium sp. JL477 Sphingorhabdus 3 1434046 0 genus 3522 1 64 0 2614947 2 3458 no rank Sphingorhabdus sp. YGSMI21 2077182 1 0 species 1002 2456 species 1806885 1 Sphingorhabdus sp. M41 0 15 165695 Sphingobium 0 31282 genus 884 1 1 13690 Sphingobium yanoikuyae 0 2611 species species 2022 Sphingobium japonicum 1 332056 0 Sphingobium chlorophenolicum 1 46429 0 species 2331 Sphingobium herbicidovorans 1 76947 0 species 1293 2611147 6 0 12048 no rank 1 484429 Sphingobium sp. YBL2 0 2839 species 0 Sphingobium sp. RAC03 1843368 1 species 1854 species 1329 Sphingobium sp. MI1205 407020 1 0 Sphingobium sp. EP60837 1855519 1 0 species 1601 Sphingobium sp. SYK-6 627192 1 0 species 1780 2645 species 1315974 1 Sphingobium sp. TKS 0 1744 species 120107 1 Sphingobium cloacae 0 Sphingobium hydrophobicum 1673076 1 0 species 2702 Sphingobium indicum 332055 1 0 species 3084 1332080 1 Sphingobium baderi 0 2563 species 2 541 Zymomonas 0 1367 genus 7 1 species 1360 Zymomonas mobilis 1 542 0 1 2685927 0 genus 1616 species 1616 Sphingomonas sp. JJ-A5 1921510 1 0 Rhizorhabdus 2 1649486 0 genus 2074 1 25 species 2049 0 Rhizorhabdus dicambivorans 1 1850238 0 Sphingopyxis 165697 10 1 336 genus 16742 0 117207 1 Sphingopyxis alaskensis 2013 species species 1568 Sphingopyxis fribergensis 1 1515612 0 0 1 267128 Sphingopyxis granuli 1827 species 33050 1 Sphingopyxis macrogoltabida 0 3646 species 0 33052 1 Sphingopyxis terrae 1046 species 0 4 2614943 no rank 6306 1611 species 1866325 1 Sphingopyxis sp. MG 0 0 Sphingopyxis sp. 113P3 292913 1 species 1208 Sphingopyxis sp. LPB0140 1913578 1 0 species 1185 0 Sphingopyxis sp. QXT-31 1357916 1 species 2302 1191478 4 Magnetococcales 0 1529 order 8 1 family 1521 1 24 Magnetococcaceae 3 1191479 0 0 Magnetococcus 162171 2 1 8 genus 1497 0 Magnetococcus marinus 1 1124597 species 1489 Parvularculales 4 255473 0 order 587 1 1 3 255474 Parvularculaceae 0 586 family 15 1 2 208215 Parvularcula 0 571 genus 3 1 species 568 Parvularcula bermudensis 1 208216 0 order 1407 0 2 2800059 0 2 2800061 family 1407 Maricaulis 2 74317 0 genus 1407 1 26 species 1381 0 Maricaulis maris 1 74318 1 3938 order 356306 0 Rhizobiales 210 356 2036754 4 Chelatococcaceae 0 5417 family 32 1 3 28209 Chelatococcus 0 5385 genus 183 1 Chelatococcus daeguensis 1 444444 0 species 2183 3019 no rank 0 2638111 1 1702325 1 Chelatococcus sp. CO-6 0 3019 species Methylobacteriaceae 119045 15 0 family 42413 1 279 186650 2 Microvirga 0 3140 genus 66 1 species 3074 0 Microvirga ossetica 1 1882682 1 1244 genus 23485 0 Methylobacterium 407 9 2044 species 334852 1 Methylobacterium oryzae 0 31998 1 Methylobacterium radiotolerans 0 3331 species no rank 8092 0 2615210 3 2454 species 1 925818 Methylobacterium sp. AMS5 0 2954 species 1479019 1 Methylobacterium sp. C1 0 Methylobacterium sp. 4-46 426117 1 0 species 2684 1 114616 Methylobacterium nodulans 0 2884 species species 2267 0 Methylobacterium phyllosphaerae 418223 1 species 3623 0 Methylobacterium aquaticum 1 270351 15509 genus 0 2282523 3 4848 species 0 223967 1 Methylobacterium populi species 2007 0 Methylobacterium zatmanii 1 29429 8654 species 0 408 1 Methylobacterium extorquens 0 7 335928 Xanthobacteraceae 177 1 12179 family genus 3127 1 49 Starkeya 2 152053 0 species 3078 Starkeya novella 1 921 0 Xanthobacter 279 2 0 genus 4077 1 75 4002 species 1 280 Xanthobacter autotrophicus 0 Azorhizobium 2 6 0 genus 4798 1 67 Azorhizobium caulinodans 1 7 0 species 4731 1 80 family 15375 0 Brucellaceae 20 118882 0 Brucella 234 14 1 3866 genus 8118 species 684 Brucella vulpis 981386 1 0 Brucella microti 1 444163 0 species 93 no rank 1854 2632610 4 0 species 614 0 Brucella sp. 141012304 1 1885919 116 species 1 1891098 Brucella sp. 2002734562 0 1 1149952 Brucella sp. 09RB8471 0 475 species species 649 Brucella sp. 09RB8910 1844051 1 0 0 1 236 Brucella ovis 53 species species 392 Brucella pinnipedialis 1 120576 0 386 species 0 1 36855 Brucella canis 29461 1 Brucella suis 0 115 species species 410 Brucella ceti 120577 1 0 0 1 235 Brucella abortus 158 species Brucella melitensis 1 29459 0 species 107 genus 7177 1 97 Ochrobactrum 5 528 0 271865 1 Ochrobactrum sp. A44 0 1596 species species 1606 0 Ochrobactrum pituitosum 571256 1 0 Ochrobactrum anthropi 1 529 species 2311 0 419475 1 Ochrobactrum pseudogrignonense 1567 species 1 48 family 11386 0 Aurantimonadaceae 7 255475 2645 genus 50 1 414371 2 Aureimonas 0 no rank 2595 1 2615206 0 species 2595 Aureimonas sp. AU20 1349819 1 0 1 204 genus 8693 0 Martelella 4 293088 Martelella endophytica 1 1486262 0 species 3526 Martelella mediterranea 1 293089 0 species 2425 1 2629616 0 2538 no rank 0 Martelella sp. AD-3 1 686597 species 2538 1 18 family 5059 0 Methylocystaceae 6 31993 genus 2387 1 58 Methylocystis 133 3 0 1004 species 655015 1 Methylocystis bryophila 0 2625913 1 0 no rank 1325 Methylocystis sp. SC2 1 187303 0 species 1325 0 Methylosinus 425 2 1 100 genus 2654 2554 species 0 1 426 Methylosinus trichosporium 7532 no rank 119042 6 0 1 38 genus 1693 0 Methyloceanibacter 2 1484898 0 1384459 1 Methyloceanibacter caenitepidi 1655 species 0 Pseudorhodoplanes 1734920 2 1 185 genus 2516 2331 species 1235591 1 Pseudorhodoplanes sinuspersici 0 0 1572860 2 Hartmannibacter 79 1 3323 genus 3244 species 1482074 1 Hartmannibacter diazotrophicus 0 5 45404 Beijerinckiaceae 0 1940 family 7 1 1 6 genus 645 0 Beijerinckia 2 532 1 533 Beijerinckia indica 0 639 species 10 1 1288 genus 0 120652 2 Methylocella 1278 species 1 199596 Methylocella silvestris 0 0 Bradyrhizobiaceae 26 41294 1 1056 family 66796 1 15 genus 2881 0 Nitrobacter 3 911 0 1 913 Nitrobacter winogradskyi 1183 species species 1683 Nitrobacter hamburgensis 912 1 0 0 2 40136 Oligotropha 1 1 1948 genus 0 40137 1 Oligotropha carboxidovorans 1947 species 2 1073 Rhodopseudomonas 0 15176 genus 120 1 1 1076 Rhodopseudomonas palustris 0 15056 species 1 176 genus 12028 0 Bosea 85413 5 8625 no rank 2653178 3 0 Bosea sp. RAC05 1 1842539 0 species 3269 0 Bosea sp. AS-1 1 2015316 species 2439 0 1 1792307 Bosea sp. PAMC 26642 2917 species 0 Bosea vaviloviae 1 1526658 species 3227 1318 genus 41 1 1649510 2 Variibacter 0 0 1 1333996 Variibacter gotjawalensis 1277 species Bradyrhizobium 374 11 0 genus 32389 1 762 17235 no rank 2631580 6 0 species 3297 Bradyrhizobium sp. ORS 285 1 115808 0 species 2991 Bradyrhizobium sp. SK17 2057741 1 0 114615 1 Bradyrhizobium sp. ORS 278 0 3378 species 2815 species 0 1 376 Bradyrhizobium sp. 0 Bradyrhizobium sp. CCGE-LA001 1223566 1 species 2208 species 2546 Bradyrhizobium sp. BTAi1 288000 1 0 0 1355477 1 Bradyrhizobium diazoefficiens 4830 species 4318 species 375 1 Bradyrhizobium japonicum 0 species 2986 Bradyrhizobium oligotrophicum 1 44255 0 0 Bradyrhizobium icense 1274631 1 species 2258 261 1 27175 family 0 45401 19 Hyphomicrobiaceae 119044 2 Filomicrobium 0 1284 genus 5 1 0 1608628 1 Candidatus Filomicrobium marinum 1279 species Rhodoplanes 29407 2 0 genus 2586 1 50 0 1 2619116 no rank 2536 2536 species 0 674703 1 Rhodoplanes sp. Z2-YC6860 59282 2 Blastochloris 0 2821 genus 55 1 species 2766 Blastochloris viridis 1 1079 0 1 61 genus 7565 0 Hyphomicrobium 4 81 species 2225 0 Hyphomicrobium denitrificans 1 53399 Hyphomicrobium nitrativorans 1427356 1 0 species 2704 no rank 2575 1 2619925 0 species 2575 0 Hyphomicrobium sp. MC1 1 717785 1155 genus 17 1 2 1068 Rhodomicrobium 0 species 1138 0 Rhodomicrobium vannielii 1069 1 0 Pelagibacterium 1082930 2 1 12 genus 2230 2218 species 0 1 531813 Pelagibacterium halotolerans 4 46913 Devosia 0 9273 genus 326 1 8947 no rank 3 196773 0 0 Devosia sp. I507 2083786 1 species 2048 0 1 1736675 Devosia sp. A16 3746 species 1 1643450 Devosia sp. H5989 0 3153 species family 1256 0 2 119043 56 1 1256 genus 0 2 256616 Parvibaculum 0 1 256618 Parvibaculum lavamentivorans 1200 species 0 Rhizobiaceae 82115 54 1 1529 family 116544 227290 35 0 85725 no rank 0 Agrobacterium 357 7 1 460 genus 22084 1183400 2 0 11156 species group Agrobacterium fabrum 1176649 1 0 species 2114 species 9042 Agrobacterium tumefaciens 1 358 0 0 Agrobacterium vitis 1 373 species 3289 4453 no rank 0 2632611 2 0 1842536 1 Agrobacterium sp. RAC06 2458 species species 1995 0 Agrobacterium sp. H13-3 861208 1 species 2726 0 Agrobacterium rhizogenes 1 359 0 Neorhizobium 1525371 2 1 17 genus 4680 0 Neorhizobium galegae 1 399 species 4663 26 379 Rhizobium 0 58961 genus 4437 1 3372 species 0 1 56730 Rhizobium gallicum 2225 species 398 1 Rhizobium tropici 0 0 20 2613769 25778 no rank species 5 0 Rhizobium sp. N871 1 1703968 281 species 1 2020313 Rhizobium sp. TAL182 0 0 Rhizobium sp. CIAT894 2020312 1 species 2100 1 1301032 Rhizobium sp. IE4771 0 1475 species 3453 species 1 1571470 Rhizobium sp. ACO-34A 0 species 1684 0 Rhizobium sp. NXC14 1 1981173 Rhizobium sp. NXC24 1 2048897 0 species 2362 0 1703962 1 Rhizobium sp. N1341 3 species 0 Rhizobium sp. N621 1 1703964 species 15 0 Rhizobium sp. NT-26 1125847 1 species 1858 2458 species 0 1703969 1 Rhizobium sp. N324 268 species 0 1703966 1 Rhizobium sp. N731 0 Rhizobium sp. S41 1 1869170 species 1885 1981 species 1914541 1 Rhizobium sp. Y9 0 species 268 Rhizobium sp. N1314 1 1703961 0 species 1339 Rhizobium sp. Kim5 2020311 1 0 15 species 0 1 1703965 Rhizobium sp. N6212 Rhizobium sp. 10195 1 2028343 0 species 2252 1703960 1 Rhizobium sp. N113 0 3 species species 2073 Rhizobium sp. IRBG74 1 424182 0 species 4145 Rhizobium phaseoli 396 1 0 species 12565 Rhizobium leguminosarum 1 384 0 species 6439 0 Rhizobium etli 1 29449 24169 no rank 227292 10 0 Ensifer 3 106591 0 genus 4637 1 27 716925 1 Ensifer sojae 0 2156 species Ensifer adhaerens 1 106592 0 species 2454 0 7 28105 Sinorhizobium 574 1 19532 genus species group 5017 1 663276 0 1 380 Sinorhizobium fredii 0 5017 species 1 382 Sinorhizobium meliloti 0 4919 species 4478 no rank 0 2 2613772 794846 1 Sinorhizobium sp. CCBAU 05631 0 1792 species Sinorhizobium sp. RAC02 1 1842534 0 species 2686 species 1975 0 Sinorhizobium medicae 110321 1 1 194963 Sinorhizobium americanum 0 2569 species 3875 genus 40 1 2 323620 Shinella 0 3835 no rank 1 2643062 0 species 3835 Shinella sp. HZN7 879274 1 0 Liberibacter 34019 6 0 genus 1246 1 15 63 species 0 1 34021 Candidatus Liberibacter asiaticus 95 species 556287 1 Candidatus Liberibacter solanacearum 0 Liberibacter crescens 1 1273132 0 species 562 Candidatus Liberibacter africanus 34020 1 0 species 374 species 137 Candidatus Liberibacter americanus 309868 1 0 1 230 family 32963 0 Phyllobacteriaceae 69277 20 Nitratireductor 245876 2 0 genus 1946 1 78 1868 species 472175 1 Nitratireductor basaltis 0 1606 genus 52 1 2 449972 Chelativorans 0 2643807 1 0 1554 no rank 1554 species 0 1 266779 Chelativorans sp. BNC1 genus 3442 1 35 Aminobacter 2 31988 0 3407 species 0 83263 1 Aminobacter aminovorans 0 28100 2 Phyllobacterium 61 1 2059 genus 0 Phyllobacterium zundukense 1 1867719 species 1998 1 561 genus 22059 0 Mesorhizobium 9 68287 0 1 593909 Mesorhizobium opportunistum 2650 species 1 325217 0 2816 no rank 2816 species 0 278153 1 Mesorhizobium sp. WSM1497 species 3196 0 Mesorhizobium ciceri 39645 1 0 Mesorhizobium loti 381 1 species 3024 2099 species 1 1670800 Mesorhizobium sp. B7 0 species 2306 Mesorhizobium amorphae 1 71433 0 species 2862 Mesorhizobium japonicum 1 2066070 0 2545 species 0 1 536018 Mesorhizobium australicum genus 1621 1 18 Hoeflea 274591 2 0 0 1 2614931 1603 no rank 1 1620421 Hoeflea sp. IMCC20628 0 1603 species 0 Bartonellaceae 772 18 1 44 family 6333 0 Bartonella 17 773 1 29 genus 6289 species 189 Bartonella clarridgeiae 1 56426 0 Bartonella australis 1 388640 0 species 159 123 species 1318743 1 Bartonella ancashensis 0 0 6 2645622 1078 no rank 0 Bartonella sp. 1-1C 1 515256 species 118 species 82 0 Bartonella sp. A1379B 1 1933910 257 species 0 1 1933906 Bartonella sp. JB15 1933904 1 Bartonella sp. WD16.2 0 263 species species 257 0 Bartonella sp. JB63 1933907 1 0 Bartonella sp. Raccoon60 1933912 1 species 101 144 species 0 1 38323 Bartonella henselae 1 1686310 Bartonella apis 0 3185 species species 356 Bartonella quintana 1 803 0 209 species 774 1 Bartonella bacilliformis 0 species 219 0 Bartonella vinsonii 1 33047 Bartonella grahamii 33045 1 0 species 421 177 species 0 1 85701 Bartonella tribocorum order 143227 1 1213 Rhodospirillales 67 204441 0 1326 1 84285 family 0 41295 31 Rhodospirillaceae 1 48 genus 4440 0 Niveispirillum 1543704 2 0 Niveispirillum cyanobacteriorum 1 1612173 species 4392 1 91 genus 7463 0 Rhodospirillum 1081 3 0 Rhodospirillum centenum 34018 1 species 4384 2988 species 1085 1 Rhodospirillum rubrum 0 46 1 6419 genus 0 2 1543705 Nitrospirillum 28077 1 Nitrospirillum amazonense 0 6373 species 191 5 Azospirillum 0 30068 genus 459 1 6685 species 0 528244 1 Azospirillum thiophilum 10336 species 192 1 Azospirillum brasilense 0 species 2560 Azospirillum humicireducens 1 1226968 0 0 Azospirillum lipoferum 1 193 species 10028 168934 3 Thalassospira 0 4331 genus 50 1 species 2235 0 Thalassospira sp. CSC3H3 2048283 1 0 Thalassospira xiamenensis 220697 1 species 2046 29 1 2464 genus 0 1612157 2 Pararhodospirillum species 2435 Pararhodospirillum photometricum 1084 1 0 0 Magnetospira 2 1182780 1 4 genus 1964 no rank 1960 2685734 1 0 1960 species 1 1288970 Magnetospira sp. QH-2 0 247 1 20304 genus 0 13134 5 Magnetospirillum 0 2617991 2 8872 no rank species 4377 0 Magnetospirillum sp. ME-1 1 1639348 species 4495 0 Magnetospirillum sp. XM-1 1 1663591 5273 species 1 84159 Magnetospirillum magneticum 0 species 5912 Magnetospirillum gryphiswaldense 1 55518 0 1 16 genus 559 0 Haematospirillum 1804663 2 543 species 0 1 1549855 Haematospirillum jordaniae 1263978 2 Candidatus Endolissoclinum 0 604 genus 7 1 species 597 Candidatus Endolissoclinum faulkneri 1 1263979 0 171436 2 Tistrella 0 4343 genus 112 1 0 171437 1 Tistrella mobilis 4231 species Acetobacteraceae 35 433 0 family 57729 1 1270 15426 genus 124 1 434 8 Acetobacter 0 0 1 151157 subgenus 1050 1050 species 1 435 Acetobacter aceti 0 1 65959 Acetobacter pomorum 0 1244 species 2769 species 1 446692 Acetobacter senegalensis 0 2358 species 0 1 1076596 Acetobacter persici Acetobacter oryzifermentans 1 1633874 0 species 1034 0 1 104102 Acetobacter tropicalis 2522 species 0 1 438 Acetobacter pasteurianus 4325 species Kozakia 153497 2 0 genus 1645 1 9 153496 1 Kozakia baliensis 0 1636 species 0 Gluconacetobacter 89583 2 1 36 genus 3225 3189 species 1 33996 Gluconacetobacter diazotrophicus 0 2 364409 Granulibacter 0 4922 genus 55 1 Granulibacter bethesdensis 364410 1 0 species 4867 4 1 1625 genus 0 1602345 2 Parasaccharibacter species 1621 Parasaccharibacter apium 1510841 1 0 genus 9746 1 343 Komagataeibacter 5 1434011 0 5076 species 0 1 28448 Komagataeibacter xylinus 0 265960 1 Komagataeibacter nataicola 1782 species species 1463 Komagataeibacter medellinensis 1177712 1 0 0 Komagataeibacter europaeus 33995 1 species 1082 0 Asaia 2 91914 1 7 genus 1050 Asaia bogorensis 1 91915 0 species 1043 1 65 genus 4494 0 Gluconobacter 441 3 species 3048 0 Gluconobacter oxydans 442 1 1381 species 1 318683 Gluconobacter albidus 0 1 199 genus 4581 0 Acidiphilium 522 3 0 Acidiphilium multivorum 62140 1 species 2027 2355 species 1 524 Acidiphilium cryptum 0 20 1 1501 genus 0 320496 2 Neoasaia species 1481 0 Neoasaia chiangmaiensis 320497 1 1 194 genus 8244 0 Roseomonas 3 125216 species 3553 0 Roseomonas gilardii 1 257708 4497 no rank 2617492 1 0 Roseomonas sp. FDAARGOS_362 1 2018065 0 species 4497 0 Holosporales 5 1921002 1 3 order 953 2100208 2 Caedimonadaceae 0 271 family 4 1 1 1509243 0 267 genus species 267 0 Candidatus Nucleicultrix amoebiphila 1 1509244 1 44746 0 family 365 204454 1 0 no rank 365 365 species 86106 1 endosymbiont of Acanthamoeba sp. UWC8 0 314 family 1 1777752 0 314 genus 0 1 1521255 species 314 0 Candidatus Paracaedibacter acanthamoebae 1 91604 0 6 2800060 4077 order 4077 family 140 1 69657 6 Hyphomonadaceae 0 914 genus 1 1 2723 2 Hirschia 0 913 species 2724 1 Hirschia baltica 0 3023 genus 3 1 3 85 Hyphomonas 0 Hyphomonas neptunium 81032 1 0 species 1891 1129 no rank 2630699 1 0 Hyphomonas sp. Mor2 1906738 1 0 species 1129 Rickettsiales 766 52 0 order 8178 1 8 Candidatus Midichloriaceae 2 1328881 0 family 203 1 4 0 411566 1 199 genus species 199 Candidatus Midichloria mitochondrii 1 234827 0 291 no rank 1699067 1 0 291 species 1528098 1 Rickettsiales bacterium Ac37b 0 6 1 5037 family 0 775 26 Rickettsiaceae 0 33988 24 4881 tribe 780 23 Rickettsia 0 4688 genus 683 1 no rank 514 114295 1 0 514 species 337479 1 Rickettsia endosymbiont of Bemisia tabaci 0 114277 17 0 species group 2360 0 Rickettsia monacensis 109232 1 species 97 1 786 Rickettsia akari 0 248 species 35791 1 Rickettsia massiliae 0 68 species 0 Rickettsia peacockii 1 47589 species 108 Rickettsia australis 787 1 0 species 389 102 species 783 1 Rickettsia rickettsii 0 species 17 Rickettsia heilongjiangensis 1 226665 0 species 8 0 Rickettsia parkeri 35792 1 23 species 35790 1 Rickettsia japonica 0 0 35788 1 Rickettsia africae 25 species species 23 0 Rickettsia slovaca 35794 1 44 species 33991 1 Rickettsia montanensis 0 species 44 Rickettsia amblyommatis 1 33989 0 species 95 Rickettsia philipii 1 1105106 0 781 1 Rickettsia conorii 0 27 species species 146 0 Rickettsia rhipicephali 33992 1 896 species 42862 1 Rickettsia felis 0 species group 819 1129742 2 0 108 species 788 1 Rickettsia canadensis 0 Rickettsia bellii 33990 1 0 species 711 312 species group 114292 2 0 161 species 782 1 Rickettsia prowazekii 0 0 Rickettsia typhi 785 1 species 151 genus 193 69474 1 0 species 193 Orientia tsutsugamushi 784 1 0 2115980 1 0 genus 150 150 species 0 1 2115978 Candidatus Phycorickettsia trachydisci 0 Anaplasmataceae 942 22 1 5 family 2639 962 tribe 0 952 8 0 953 8 Wolbachia 10 1 962 genus 7 2640676 0 952 no rank Wolbachia sp. wRi 66084 1 0 species 154 Wolbachia endosymbiont of Drosophila simulans 1 77038 0 species 275 species 72 0 Wolbachia endosymbiont of Onchocerca ochengi 100901 1 Wolbachia endosymbiont of Onchocerca volvulus 1 77551 0 species 72 0 Wolbachia endosymbiont of Brugia malayi 80849 1 species 148 species 133 Wolbachia endosymbiont of Drosophila melanogaster 1 163164 0 species 98 0 Wolbachia endosymbiont of Cimex lectularius 1 246273 3 768 0 genus 430 148 species group 0 106179 1 species 148 Anaplasma phagocytophilum 948 1 0 species 172 Anaplasma centrale 769 1 0 770 1 Anaplasma marginale 0 110 species Ehrlichia 6 943 0 genus 991 1 48 106178 4 0 species group 853 0 1 35795 Ehrlichia muris 126 species Ehrlichia canis 944 1 0 species 369 species 117 Ehrlichia chaffeensis 945 1 0 species 241 Ehrlichia ruminantium 779 1 0 90 no rank 106181 1 0 90 species 391036 1 Ehrlichia sp. HF 0 Neorickettsia 4 33993 0 genus 251 1 2 950 1 Neorickettsia risticii 0 118 species 78 species 0 1 951 Neorickettsia sennetsu species 53 Neorickettsia helminthoeca 33994 1 0 Caulobacterales 20 204458 0 order 40807 1 344 Caulobacteraceae 76892 19 0 family 40463 1 807 0 2 76890 Asticcacaulis 62 1 2286 genus 0 Asticcacaulis excentricus 1 78587 species 2224 Caulobacter 6 75 0 genus 20874 1 362 155892 1 Caulobacter vibrioides 0 6297 species 1 2648921 0 4610 no rank 0 Caulobacter sp. K31 366602 1 species 4610 2629 species 69395 1 Caulobacter henricii 0 3606 species 88688 1 Caulobacter segnis 0 0 69666 1 Caulobacter mirabilis 3370 species 1 81440 0 no rank 843 0 Caulobacteraceae bacterium OTSz_A_272 1759059 1 species 843 genus 3668 1 17 Phenylobacterium 2 20 0 3651 species 0 1 284016 Phenylobacterium zucineum Brevundimonas 7 41275 0 genus 11985 1 175 2584 species 0 1 588932 Brevundimonas naejangsanensis 1822 species 0 1 41276 Brevundimonas vesicularis Brevundimonas subvibrioides 1 74313 0 species 1661 5743 no rank 2622653 3 0 Brevundimonas sp. LM2 1 1938605 0 species 2005 1730 species 0 1 1827469 Brevundimonas sp. GW460-12-10-14-LB2 species 2008 0 Brevundimonas sp. DS20 1532555 1 no rank 9056 0 8 82117 0 1632780 2 Phreatobacter 92 1 3059 genus 2967 species 0 1 1868589 Phreatobacter sp. S-12 0 62654 2 860 clade 5 1 860 genus 0 2 767891 Candidatus Puniceispirillum 855 species 0 1 767892 Candidatus Puniceispirillum marinum genus 2584 1 58 Micavibrio 2 213485 0 0 1 349221 Micavibrio aeruginosavorus 2526 species 0 2 991903 Polymorphum 29 1 2553 genus 0 Polymorphum gilvum 1 991904 species 2524 Pelagibacterales 54526 6 0 order 1265 1 1 0 4 1655514 984 family 0 2 1655516 no rank 631 0 1 744985 alpha proteobacterium HIMB59 457 species alpha proteobacterium HIMB5 859653 1 0 species 174 353 genus 0 198251 2 no rank 200 0 2647897 1 200 species 0 1 1002672 Candidatus Pelagibacter sp. IMCC9063 1 198252 Candidatus Pelagibacter ubique 0 153 species genus 280 1 2045213 0 0 1925548 1 Candidatus Fonsibacter ubiquis 280 species 4 1 4891 class 0 1553900 10 Oligoflexia 1 1 order 1017 0 Bacteriovoracales 4 2024979 1652132 1 0 441 family 441 genus 1652133 1 0 Halobacteriovorax marinus 97084 1 0 species 441 2 263369 0 family 575 1 5 genus 575 0 Bacteriovorax 146784 2 570 species 0 960 1 Bacteriovorax stolpii 0 5 213481 Bdellovibrionales 29 1 3870 order 213483 4 Bdellovibrionaceae 0 3841 family 17 1 32 1 3824 genus 0 958 3 Bdellovibrio 1 959 Bdellovibrio bacteriovorus 0 3479 species species 313 0 Bdellovibrio exovorus 453816 1 28216 350 Betaproteobacteria 0 762471 class 1453 1 3218 no rank 12 119066 0 0 Candidatus Accumulibacter 327159 2 1 148 genus 2059 1911 species 0 1 327160 Candidatus Accumulibacter phosphatis 189384 1 0 genus 2 0 1 189385 Candidatus Tremblaya princeps 2 species genus 16 1 1301080 0 0 1 1160784 Candidatus Nasuia deltocephalinicola 16 species 1025 genus 7 1 6 33055 Kinetoplastibacterium 0 994692 1 Candidatus Kinetoplastibacterium desouzaii 0 114 species 33056 1 Candidatus Kinetoplastibacterium crithidii 0 386 species 255 species 1 994695 Candidatus Kinetoplastibacterium galatii 0 0 1 233181 Kinetoplastibacterium blastocrithidii 89 species 994696 1 Candidatus Kinetoplastibacterium oncopeltii 0 174 species genus 116 1 1 Candidatus Profftella 1381133 2 0 0 Candidatus Profftella armatura 1 669502 species 115 order 37997 1 511 Rhodocyclales 206389 22 0 809 1 26601 family 0 2008794 12 Zoogloeaceae 15377 genus 192 1 33057 6 Thauera 0 1134435 1 Thauera humireducens 0 2819 species 0 96773 1 Thauera chlorobenzoica 2448 species 0 2 2609274 no rank 7981 species 3783 Thauera sp. MZ1T 1 85643 0 species 4198 Thauera sp. K11 2005884 1 0 1937 species 0 1 59405 Thauera aromatica 5 12960 Azoarcus 0 10415 genus 334 1 no rank 5349 2629479 2 0 0 748247 1 Azoarcus sp. KH32C 2471 species species 2878 Azoarcus sp. CIB 1 198107 0 2113 species 2067960 1 Azoarcus sp. SY39 0 species 2619 Azoarcus olearius 418699 1 0 165 1 8896 family 0 75787 6 Rhodocyclaceae 551759 2 Aromatoleum 0 2021 genus 18 1 2003 species 551760 1 Aromatoleum aromaticum 0 73 1 4555 genus 0 146937 2 Azospira species 4482 Azospira oryzae 1 146939 0 no rank 2155 0 75788 1 species 2155 0 Rhodocyclaceae bacterium 1898103 1 2008795 3 Azonexaceae 0 1989 family 20 1 Dechloromonas 73029 2 0 genus 1969 1 11 species 1958 Dechloromonas aromatica 259537 1 0 0 80840 234 Burkholderiales 8157 1 622920 order 69763 family 575 1 75682 29 Oxalobacteraceae 0 507 1 17135 genus 0 963 6 Herbaspirillum 0 1 341045 Herbaspirillum hiltneri 2275 species 1 2624150 0 no rank 2139 1 2025949 Herbaspirillum sp. meg3 0 2139 species 0 1 92645 Herbaspirillum frisingense 4134 species 0 80842 1 Herbaspirillum rubrisubalbicans 3765 species species 4315 0 Herbaspirillum seropedicae 1 964 265 1 11118 genus 0 4 202907 Collimonas species 3611 Collimonas pratensis 1 279113 0 0 Collimonas arenae 279058 1 species 3305 158899 1 Collimonas fungivorans 0 3937 species genus 21013 1 427 Massilia 6 149698 0 species 2998 Massilia sp. B2 2045208 1 0 0 2609279 2 8809 no rank species 4383 0 Massilia sp. WG5 1707785 1 Massilia sp. NR 4-1 1 1678028 0 species 4426 species 3486 Massilia putida 1141883 1 0 Massilia sp. ZMN-3 2072590 1 0 species 5293 0 Herminiimonas 303379 3 1 3 genus 1379 species 695 0 Herminiimonas arsenicoxydans 204773 1 681 species 1 1809410 Herminiimonas arsenitoxidans 0 0 29580 7 Janthinobacterium 232 1 17296 genus 0 368607 1 Janthinobacterium svalbardensis 3678 species 2664 species 0 55508 1 Janthinobacterium agaricidamnosum 0 2610881 4 10722 no rank species 1059 Janthinobacterium sp. Marseille 1 375286 0 0 1236179 1 Janthinobacterium sp. B9-8 1108 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 0 species 3926 4629 species 0 1938606 1 Janthinobacterium sp. LM6 1247 genus 2 1 846 2 Oxalobacter 0 0 Oxalobacter formigenes 847 1 species 1245 family 164788 1 2837 Comamonadaceae 58 80864 0 Rhodoferax 28065 5 0 genus 13297 1 150 species 4319 Rhodoferax koreense 1842727 1 0 0 81479 1 Rhodoferax antarcticus 3460 species 2092 species 1 192843 Rhodoferax ferrireducens 0 species 3276 Rhodoferax saidenbachensis 1484693 1 0 21723 genus 733 1 5 80865 Delftia 0 6224 species 0 1 180282 Delftia tsuruhatensis species 4521 Delftia acidovorans 80866 1 0 10245 no rank 0 2613839 2 1 1920191 Delftia sp. HK171 0 4631 species 0 1 742013 Delftia sp. Cs1-4 5614 species 0 Ramlibacter 174951 2 1 27 genus 7417 94132 1 Ramlibacter tataouinensis 0 7390 species genus 2627 1 37 Verminephrobacter 2 364316 0 1 364317 Verminephrobacter eiseniae 0 2590 species 0 Polaromonas 3 52972 1 40 genus 7061 216465 1 Polaromonas naphthalenivorans 0 3384 species 0 2638319 1 3637 no rank 0 296591 1 Polaromonas sp. JS666 3637 species 29574 genus 917 1 12916 9 Acidovorax 0 species 2852 Acidovorax ebreus 1 721785 0 Acidovorax sp. NA3 1 553814 0 species 3236 Acidovorax avenae 1 80867 0 species 3802 3033 species 1 80869 Acidovorax citrulli 0 0 4 2684926 no rank 15734 3076 species 0 1 1858609 Acidovorax sp. T1 species 5045 Acidovorax sp. KKS102 358220 1 0 1842533 1 Acidovorax sp. RAC01 0 4234 species species 3379 0 Acidovorax sp. JS42 1 232721 0 3 219181 Ottowia 52 1 7717 genus species 3979 0 Ottowia sp. KADR8-3 1 2109914 no rank 3686 1 2645081 0 species 3686 0 Ottowia sp. oral taxon 894 1658672 1 0 1 1436289 1132 genus 0 1436290 1 Candidatus Symbiobacter mobilis 1132 species Limnohabitans 3 665874 0 genus 3189 1 19 3170 no rank 2 2626134 0 1 1678129 Limnohabitans sp. 103DPR2 0 931 species species 2239 0 Limnohabitans sp. 63ED37-2 1 1678128 genus 3066 1 53 Simplicispira 352450 2 0 species 3013 0 Simplicispira sp. SC1-8 1 2109915 0 Variovorax 5 34072 1 466 genus 20078 species 3583 0 Variovorax boronicumulans 1 436515 no rank 7240 2 663243 0 1910 species 1 1795631 Variovorax sp. PAMC 28711 0 1 2126319 Variovorax sp. PMC12 0 5330 species 8789 species 1 34073 Variovorax paradoxus 0 0 Melaminivora 1649468 2 1 73 genus 3703 3630 no rank 2641902 1 0 2109913 1 Melaminivora sp. SC2-9 0 3630 species 4165 genus 1 2678886 0 4165 species 0 1 2116657 Melaminivora sp. SC2-7 47420 4 Hydrogenophaga 0 10296 genus 86 1 no rank 8073 2610897 2 0 3584 species 1842537 1 Hydrogenophaga sp. RAC07 0 species 4489 0 Hydrogenophaga sp. PBC 1 795665 Hydrogenophaga crassostreae 1763535 1 0 species 2137 Comamonas 283 4 0 genus 14498 1 124 0 1082851 1 Comamonas serinivorans 3631 species 0 Comamonas testosteroni 285 1 species 6742 0 225992 1 Comamonas kerstersii 4001 species 1 24 genus 5016 0 Alicycliphilus 2 201096 0 179636 1 Alicycliphilus denitrificans 4992 species genus 2472 1 21 Diaphorobacter 2 238749 0 0 1546149 1 Diaphorobacter polyhydroxybutyrativorans 2451 species 0 2490452 2 genus 4920 0 Comamonadaceae bacterium A1 1 1458425 species 1959 2961 species 1458426 1 Comamonadaceae bacterium B1 0 0 Burkholderiaceae 84 119060 1 1502 family 209310 0 10 93217 Pandoraea 383 1 17173 genus species 1472 Pandoraea faecigallinarum 656179 1 0 2378 species 0 1 573737 Pandoraea oxalativorans 0 93218 1 Pandoraea apista 2088 species 0 1 93220 Pandoraea pnomenusa 1813 species 93222 1 Pandoraea sputorum 0 1458 species species 1937 Pandoraea pulmonicola 1 93221 0 0 656178 1 Pandoraea vervacti 2246 species Pandoraea norimbergensis 93219 1 0 species 1644 species 1754 Pandoraea thiooxydans 1 445709 0 1103 genus 2571159 1 0 Paraburkholderia rhizoxinica 412963 1 0 species 1103 1727 genus 1827195 1 0 758793 1 Burkholderia sp. RPE64 0 1727 species genus 1023 1 2 Polynucleobacter 44013 4 0 species 430 Polynucleobacter duraquae 1 1835254 0 201 species 1 576610 Polynucleobacter necessarius 0 species 390 Polynucleobacter asymbioticus 576611 1 0 genus 35613 1 1155 Cupriavidus 9 106589 0 3672 species 1 119219 Cupriavidus metallidurans 0 3560 species 0 68895 1 Cupriavidus basilensis 1 367825 Cupriavidus sp. USMAA1020 0 4815 species 7238 species 1 106590 Cupriavidus necator 0 0 1 82541 Cupriavidus gilardii 2893 species 1 248026 Cupriavidus pinatubonensis 0 2746 species 0 2640874 2 no rank 9534 Cupriavidus sp. USMAA2-4 876364 1 0 species 5280 species 4254 0 Cupriavidus sp. USMAHM13 1389192 1 1 4233 genus 97595 0 Burkholderia 32008 41 species group 13429 0 111527 7 species 1203 0 Burkholderia mallei 13373 1 1 1637837 Burkholderia sp. MSMB0266 0 1080 species 0 Burkholderia thailandensis 1 57975 species 3663 3830 species 0 1 28450 Burkholderia pseudomallei 0 1 1637831 Burkholderia sp. MSMB617WGS 948 species species 937 Burkholderia sp. MSMB0852 1 1637841 0 species 1768 Burkholderia oklahomensis 342113 1 0 species 6277 Burkholderia gladioli 1 28095 0 17124 no rank 11 2613784 0 Burkholderia sp. Bp7605 1740163 1 0 species 1447 species 1020 Burkholderia sp. PAMC 28687 1795874 1 0 species 1384 Burkholderia sp. KJ006 416344 1 0 921 species 1 1740162 Burkholderia sp. Bp5365 0 0 1 1468409 Burkholderia sp. 2002721687 942 species 0 Burkholderia sp. YI23 1097668 1 species 2481 2260 species 758796 1 Burkholderia sp. RPE67 0 0 1678678 1 Burkholderia sp. HB1 1860 species 0 Burkholderia sp. PAMC 26561 1795043 1 species 976 species 1938 0 Burkholderia sp. CCGE1001 640510 1 1895 species 1 640512 Burkholderia sp. CCGE1003 0 48534 species group 19 87882 0 1345 species 1207504 1 Burkholderia pseudomultivorans 0 species 2125 0 Burkholderia ambifaria 152480 1 1535 species 1 488732 Burkholderia diffusa 0 0 1 1503054 Burkholderia stagnalis 1484 species species 1006 Burkholderia metallica 1 488729 0 1148 species 0 60550 1 Burkholderia pyrrocinia 2027 species 0 95485 1 Burkholderia stabilis Burkholderia latens 488446 1 0 species 1552 species 2190 0 Burkholderia vietnamiensis 60552 1 species 8908 Burkholderia cepacia 1 292 0 1332 species 488731 1 Burkholderia seminalis 0 Burkholderia ubonensis 1 101571 0 species 4624 0 1 265293 [Pseudomonas] mesoacidophila 1620 species 0 95486 1 Burkholderia cenocepacia 7885 species 2957 species 482957 1 Burkholderia lata 0 1005 species 0 1 1503055 Burkholderia territorii species 2711 Burkholderia multivorans 87883 1 0 0 Burkholderia contaminans 1 488447 species 1794 species 1286 Burkholderia dolosa 152500 1 0 Burkholderia glumae 1 337 0 species 5078 0 Burkholderia plantarii 1 41899 species 2920 12 1822464 Paraburkholderia 0 26256 genus 352 1 Paraburkholderia phytofirmans 1 261302 0 species 2520 0 148447 1 Paraburkholderia phymatum 1930 species Paraburkholderia sprentiae 1 948107 0 species 2481 1 2615204 0 no rank 2024 1926494 1 Paraburkholderia sp. SOS3 0 2024 species 0 252970 1 Paraburkholderia phenoliruptrix 2399 species species 1796 Paraburkholderia xenovorans 1 36873 0 Paraburkholderia aromaticivorans 1 2026199 0 species 2531 species 2102 Paraburkholderia hospita 1 169430 0 0 75105 1 Paraburkholderia caribensis 3702 species species 2434 0 Paraburkholderia terrae 1 311230 0 Paraburkholderia fungorum 1 134537 species 1985 genus 27318 1 404 Ralstonia 48736 5 0 Ralstonia insidiosa 1 190721 0 species 3873 species 4090 0 Ralstonia mannitolilytica 105219 1 1 305 Ralstonia solanacearum 0 12525 species 0 329 1 Ralstonia pickettii 6426 species family 127248 1 1024 Alcaligenaceae 506 43 0 0 2 90243 Oligella 15 1 632 genus species 617 0 Oligella urethralis 90245 1 3353 genus 148 1 3 290425 Advenella 0 302406 1 Advenella mimigardefordensis 0 1618 species 0 310575 1 Advenella kashmirensis 1587 species genus 377 1 13 Basilea 1472344 2 0 364 species 1472345 1 Basilea psittacipulmonis 0 Achromobacter 6 222 0 genus 46671 1 1459 9878 species 32002 1 Achromobacter denitrificans 0 species 17500 Achromobacter xylosoxidans 85698 1 0 1 217204 Achromobacter insolitus 0 4301 species no rank 5613 1 2626865 0 Achromobacter sp. AONIH1 1 1758194 0 species 5613 7920 species 1 217203 Achromobacter spanius 0 1 52 genus 3959 0 Alcaligenes 2 507 species 3907 Alcaligenes faecalis 511 1 0 517 17 Bordetella 0 58343 genus 1813 1 2957 species 1 520 Bordetella pertussis 0 Bordetella pseudohinzii 1 1331258 0 species 3799 3839 species 1 94624 Bordetella petrii 0 species 2992 0 Bordetella genomosp. 9 1416803 1 3905 species 1 103855 Bordetella hinzii 0 0 Bordetella bronchiseptica 1 518 species 6548 2355 species 1 521 Bordetella avium 0 4057 species 0 1 1416806 Bordetella genomosp. 8 0 Bordetella genomosp. 13 463040 1 species 3135 species 3403 Bordetella flabilis 1 463014 0 3713 species 0 519 1 Bordetella parapertussis species 3942 0 Bordetella bronchialis 463025 1 0 Bordetella trematum 1 123899 species 3173 0 Bordetella holmesii 1 35814 species 1865 0 2630031 1 3695 no rank species 3695 0 Bordetella sp. H567 1 1697043 3152 species 1 463024 Bordetella genomosp. 6 0 1 121 genus 4792 0 Castellaniella 2 359336 75697 1 Castellaniella defragrans 0 4671 species 1100891 2 Paenalcaligenes 0 562 genus 4 1 643674 1 Paenalcaligenes hominis 0 558 species 1 12 genus 2184 0 Pusillimonas 2 305976 no rank 2172 0 1 2640016 Pusillimonas sp. T7-7 1 1007105 0 species 2172 1921582 2 Orrella 0 4784 genus 139 1 0 Orrella dioscoreae 1 1851544 species 4645 29574 2 0 567 genus 1 84590 Taylorella asinigenitalis 0 286 species 1 29575 Taylorella equigenitalis 0 281 species 0 2 80841 no rank 3159 Burkholderiales bacterium GJ-E10 1 1469502 0 species 1064 2095 species 1834205 1 Burkholderiales bacterium YL45 0 0 17 224471 no rank 40495 4430 genus 270 1 2 318147 Paucibacter 0 no rank 4160 0 1 2642959 species 4160 0 Paucibacter sp. KCTC 42545 1768242 1 genus 4807 1 59 Thiomonas 32012 2 0 4748 species 0 1 926 Thiomonas intermedia genus 5162 1 102 Rubrivivax 28067 2 0 1 28068 Rubrivivax gelatinosus 0 5060 species genus 4022 1 159 Leptothrix 2 88 0 species 3863 0 Leptothrix cholodnii 1 34029 0 212743 2 Rhizobacter 138 1 4819 genus Rhizobacter gummiphilus 946333 1 0 species 4681 3394 species 413882 1 [Polyangium] brachysporum 0 Mitsuaria 65047 2 0 genus 3889 1 106 no rank 3783 0 2648776 1 Mitsuaria sp. 7 1658665 1 0 species 3783 0 93681 2 Roseateles 92 1 6471 genus Roseateles depolymerans 76731 1 0 species 6379 54 1 3501 genus 0 316612 2 Methylibium species 3447 Methylibium petroleiphilum 105560 1 0 Neisseriales 206351 36 0 order 64356 1 1083 Chromobacteriaceae 13 1499392 0 family 30200 1 484 0 Aquaspirillum 187 2 1 33 genus 4086 0 1 2620219 no rank 4053 4053 species 0 1938604 1 Aquaspirillum sp. LM1 38 1 2216 genus 0 885864 2 Jeongeupia 0 1 2619593 2178 no rank 0 1 1906741 Jeongeupia sp. USM3 2178 species 90153 4 0 16072 no rank 240 1 16072 genus 0 535 4 Chromobacterium 4509 species 0 536 1 Chromobacterium violaceum 4499 no rank 0 1 2641838 4499 species 1 2059672 Chromobacterium sp. ATCC 53434 0 1108595 1 Chromobacterium vaccinii 0 6824 species 1 36 genus 3584 0 Laribacter 2 168470 0 Laribacter hongkongensis 1 168471 species 3548 Pseudogulbenkiania 2 568394 0 genus 3758 1 25 1 2642558 0 3733 no rank 0 748280 1 Pseudogulbenkiania sp. NH8B 3733 species family 33073 1 632 Neisseriaceae 22 481 0 25249 genus 458 1 12 482 Neisseria 0 5162 species 1 487 Neisseria meningitidis 0 species 1504 0 Neisseria elongata 495 1 species 1425 0 Neisseria zoodegmatis 1 326523 Neisseria mucosa 1 488 0 species 1674 0 2623750 2 5095 no rank 1 1853276 Neisseria sp. 10022 0 1633 species species 3462 Neisseria sp. KEM232 1 655307 0 Neisseria lactamica 486 1 0 species 2670 1 28091 Neisseria weaveri 0 1573 species species 1817 Neisseria sp. 10023 1 1853278 0 1751 species 0 490 1 Neisseria sicca 2120 species 1 485 Neisseria gonorrhoeae 0 1 2 genus 768 0 Snodgrassella 1193515 2 766 species 0 1196083 1 Snodgrassella alvi 0 Eikenella 2 538 1 11 genus 2246 1 539 Eikenella corrodens 0 2235 species 1 86 genus 3349 0 Vitreoscilla 59 3 1 2627922 0 no rank 536 species 536 0 Vitreoscilla sp. C1 1 96942 0 Vitreoscilla filiformis 63 1 species 2727 364 no rank 1 421605 0 0 Neisseriaceae bacterium DSM 100970 2052837 1 species 364 71 1 0 genus 465 species 465 0 Simonsiella muelleri 1 72 1 170 order 29819 0 Nitrosomonadales 32003 43 2008790 3 Thiobacillaceae 0 1432 family 16 1 2 919 Thiobacillus 0 1416 genus 19 1 0 Thiobacillus denitrificans 1 36861 species 1397 206379 12 Nitrosomonadaceae 0 7525 family 40 1 1 93 genus 4568 0 Nitrosomonas 914 7 no rank 1272 0 2609265 2 815 species 1 261292 Nitrosomonas sp. Is79A3 0 species 457 0 Nitrosomonas sp. AL212 1 153948 Nitrosomonas europaea 1 915 0 species 1483 772 species 1 44574 Nitrosomonas communis 0 916 1 Nitrosomonas eutropha 0 462 species 44577 1 Nitrosomonas ureae 0 486 species 0 Nitrosospira 35798 4 1 18 genus 2917 1293 species 0 35799 1 Nitrosospira briensis 718 species 1 1231 Nitrosospira multiformis 0 888 species 0 1 1288494 Nitrosospira lacus family 3931 1 156 Gallionellaceae 5 90627 0 0 2 314343 Sideroxydans 52 1 2695 genus 0 63745 1 Sideroxydans lithotrophicus 2643 species 1080 genus 19 1 2 96 Gallionella 0 species 1061 0 Gallionella capsiferriformans 370405 1 4 2772226 0 family 2926 1778653 2 Sulfuriferula 0 1327 genus 2 1 0 2637784 1 1325 no rank 0 Sulfuriferula sp. AH1 1 1985873 species 1325 137 1 1599 genus 0 2 935200 Sulfuricella 1462 species 1 649841 Sulfuricella denitrificans 0 Sterolibacteriaceae 5 2008793 0 family 6202 1 112 Sulfuritalea 1054211 2 0 genus 2648 1 155 0 Sulfuritalea hydrogenivorans 748811 1 species 2493 0 Methyloversatilis 2 378210 1 39 genus 3442 3403 no rank 1 2639971 0 3403 species 0 1 1842540 Methyloversatilis sp. RAC08 Methylophilaceae 13 32011 0 family 7633 1 54 genus 773 1679002 2 0 0 1581680 1 Candidatus Methylopumilus turicensis 351 species species 422 Candidatus Methylopumilus planktonicus 1 1581557 0 1 17 genus 1549 0 Methylobacillus 2 404 0 405 1 Methylobacillus flagellatus 1532 species genus 1350 1 13 Methylotenera 3 359407 0 662 species 0 1 359408 Methylotenera mobilis 0 1055487 1 Methylotenera versatilis 675 species 3 1 497 genus 0 16 2 Methylophilus no rank 494 0 2630143 1 0 Methylophilus sp. TWE2 1662285 1 species 494 0 81682 3 Methylovorus 149 1 3410 genus no rank 1703 2634027 1 0 1703 species 887061 1 Methylovorus sp. MP688 0 species 1558 0 Methylovorus glucosotrophus 1 266009 33809 2 0 no rank 2708 0 Betaproteobacteria bacterium GR16-43 1 1904640 species 2307 species 401 beta proteobacterium CB 1 543913 0 subphylum 391606 68525 200 0 0 Epsilonproteobacteria 29547 72 1 213 class 94045 1 1190 order 92512 0 Campylobacterales 66 213849 12 1 5659 family 0 72293 15 Helicobacteraceae 2 843 Wolinella 0 360 genus 4 1 0 1 844 Wolinella succinogenes 356 species Helicobacter 12 209 0 genus 5287 1 9 no rank 154 0 1 2593540 Helicobacter sp. MIT 01-6242 222136 1 0 species 154 487 species 0 138563 1 Helicobacter cetorum 285 species 1591088 1 Helicobacter himalayensis 0 0 Helicobacter bilis 37372 1 species 220 Helicobacter hepaticus 32025 1 0 species 417 species 101 0 Helicobacter acinonychis 212 1 503 species 214 1 Helicobacter felis 0 217 1 Helicobacter mustelae 0 466 species species 307 0 Helicobacter cinaedi 1 213 0 1 76936 Helicobacter typhlonius 322 species 2016 species 210 1 Helicobacter pylori 0 3368 1 81174 family 0 41 72294 Campylobacteraceae 0 5 2321108 no rank 2938 937 genus 2321187 1 0 species 937 0 Arcobacter sp. LPB0137 1 1850254 1004 genus 36 1 28196 3 Arcobacter 0 0 Arcobacter butzleri 1 28197 species 469 499 species 1 28199 Arcobacter nitrofigilis 0 2321207 1 0 997 no rank 0 1 944547 Arcobacter sp. L 997 species 3307 genus 65 1 9 57665 Sulfurospirillum 0 Sulfurospirillum halorespirans 1 194424 0 species 399 no rank 1298 0 2618290 3 Sulfurospirillum sp. UCH001 1581011 1 0 species 525 species 331 Sulfurospirillum sp. JPD-1 220622 1 0 0 1986224 1 Sulfurospirillum sp. SL2-1 442 species species 241 Sulfurospirillum barnesii 1 44674 0 Sulfurospirillum multivorans 66821 1 0 species 454 Sulfurospirillum deleyianum 65553 1 0 species 287 species 563 Sulfurospirillum cavolei 1 366522 0 71561 genus 282 1 194 26 Campylobacter 0 species 682 Campylobacter sputorum 206 1 0 species 615 Campylobacter lanienae 75658 1 0 species 321 Campylobacter insulaenigrae 260714 1 0 species 414 0 Campylobacter peloridis 488546 1 species 8538 0 Campylobacter jejuni 197 1 1 196 Campylobacter fetus 0 1159 species 0 Campylobacter lari 201 1 species 980 0 1 28898 Campylobacter helveticus 359 species 1160 species 1 824 Campylobacter gracilis 0 896 species 199 1 Campylobacter concisus 0 1 200 Campylobacter curvus 0 707 species 796 no rank 0 2593542 4 Campylobacter sp. RM6137 1660073 1 0 species 246 209 species 1500960 1 Campylobacter sp. RM16704 0 0 1660076 1 Campylobacter sp. RM12175 128 species 213 species 1660074 1 Campylobacter sp. RM8964 0 423 species 0 1 1244531 Campylobacter iguaniorum 0 1 1031542 Campylobacter volucris 476 species species 796 Campylobacter ureolyticus 1 827 0 0 1 522485 Campylobacter avium 324 species 294 species 0 1 374106 Campylobacter cuniculorum Campylobacter pinnipediorum 1965231 1 0 species 595 0 497724 1 Campylobacter subantarcticus 319 species 473 species 0 198 1 Campylobacter hyointestinalis 0 1 76517 Campylobacter hominis 404 species 50548 species 0 1 195 Campylobacter coli family 2818 0 2771472 5 3 265570 Sulfurovum 0 1555 genus 2 1 2646778 1 0 823 no rank 823 species 387093 1 Sulfurovum sp. NBC37-1 0 0 206403 1 Sulfurovum lithotrophicum 730 species 0 Nitratifractor 2 269260 1 10 genus 1263 species 1253 0 Nitratifractor salsuginis 269261 1 family 1671 0 2771471 4 genus 481 1 286130 0 Sulfuricurvum kujiense 148813 1 0 species 481 Sulfurimonas 3 202746 0 genus 1190 1 3 species 829 Sulfurimonas autotrophica 1 202747 0 0 Sulfurimonas denitrificans 1 39766 species 358 0 Nautiliales 5 235899 1 9 order 1320 family 522 2795691 2 0 genus 522 1 1 Nitratiruptor 269258 2 0 no rank 521 1 2624044 0 0 Nitratiruptor sp. SB155-2 1 387092 species 521 family 789 224467 2 0 genus 789 1 20 Nautilia 2 191291 0 244787 1 Nautilia profundicola 0 769 species 848 1 297561 class 0 128 28221 Deltaproteobacteria 0 Desulfobacterales 213118 19 1 181 order 23203 0 10 213119 Desulfobacteraceae 75 1 12811 family 1204 genus 8 1 2 2295 Desulfobacterium 0 species 1196 0 Desulfobacterium autotrophicum 1 2296 1483 genus 1 1 28222 2 Desulfobacula 0 0 28223 1 Desulfobacula toluolica 1482 species 0 Desulfococcus 896 3 1 25 genus 6666 4367 species 181663 1 Desulfococcus oleovorans 0 species 2274 Desulfococcus multivorans 1 897 0 1 6 genus 3383 0 Desulfatibacillum 218207 2 3377 species 1 259354 Desulfatibacillum alkenivorans 0 family 10211 1 55 Desulfobulbaceae 8 213121 0 0 Desulfocapsa 53318 2 1 2 genus 790 species 788 Desulfocapsa sulfexigens 65555 1 0 genus 1213 0 1 109168 Desulfotalea psychrophila 1 84980 0 species 1213 genus 3126 1 22 Desulfobulbus 2 893 0 0 Desulfobulbus sp. ORNL 1986146 1 species 3104 0 2 427922 Desulfurivibrio 19 1 5027 genus 0 427923 1 Desulfurivibrio alkaliphilus 5008 species 0 Myxococcales 38 29 1 1393 order 107829 4442 suborder 224462 3 0 Kofleriaceae 224464 3 0 family 4442 1 66 56 1 4376 genus 0 162027 2 Haliangium species 4320 Haliangium ochraceum 1 80816 0 suborder 16359 8 80812 0 5 49 Polyangiaceae 0 13782 family 31 1 10453 genus 41 1 2 39643 Sorangium 0 10412 species 56 1 Sorangium cellulosum 0 0 2 50 Chondromyces 18 1 3298 genus 0 52 1 Chondromyces crocatus 3280 species family 2577 1 13 Sandaracinaceae 1055686 3 0 1 61 genus 2564 0 Sandaracinus 1055688 2 2503 species 1 927083 Sandaracinus amylolyticus 0 0 80811 26 85635 suborder 0 Anaeromyxobacteraceae 5 1524215 1 139 family 16545 genus 16406 1 310 Anaeromyxobacter 161492 4 0 no rank 7858 0 2 2620896 2880 species 1 404589 Anaeromyxobacter sp. Fw109-5 0 0 Anaeromyxobacter sp. K 447217 1 species 4978 0 Anaeromyxobacter dehalogenans 161493 1 species 8238 2483 family 18 1 3 1524213 Vulgatibacteraceae 0 1 36 genus 2465 0 Vulgatibacter 1524214 2 0 1391653 1 Vulgatibacter incomptus 2429 species 1 713 family 24763 0 Archangiaceae 9 39 1 32 genus 5110 0 Melittangium 2 44 0 1 83453 Melittangium boletus 5078 species genus 6461 1 214 Cystobacter 42 2 0 6247 species 43 1 Cystobacter fuscus 0 5619 genus 57 1 2 40 Stigmatella 0 5562 species 0 41 1 Stigmatella aurantiaca 132 1 6860 genus 0 47 2 Archangium 6728 species 0 1 48 Archangium gephyra 0 31 9 Myxococcaceae 528 1 41844 family 358 1 14239 genus 0 3 83461 Corallococcus Corallococcus coralloides 1 184914 0 species 7639 species 6242 Myxococcus macrosporus 1 35 0 1183 1 27077 genus 0 32 5 Myxococcus species 4581 0 Myxococcus stipitatus 1 83455 species 5759 0 Myxococcus hansupus 1297742 1 species 4726 0 Myxococcus xanthus 1 34 0 Myxococcus fulvus 33 1 species 10828 1161 order 47 1 213113 5 Desulfurellales 0 4 117942 0 family 1114 genus 703 1 2 Hippea 2 84404 0 species 701 0 Hippea maritima 84405 1 33001 2 Desulfurella 0 411 genus 3 1 33002 1 Desulfurella acetivorans 0 408 species 4 453227 Desulfarculales 0 5759 order 128 1 5631 family 81 1 3 453228 Desulfarculaceae 0 5550 genus 51 1 2 453229 Desulfarculus 0 1 453230 Desulfarculus baarsii 0 5499 species 1 769 order 61985 0 Desulfuromonadales 24 69541 family 20796 1 472 Desulfuromonadaceae 213421 9 0 18 5 Pelobacter 0 12616 genus 55 1 0 1 29543 Pelobacter propionicus 5169 species 1 2620299 0 1956 no rank 1956 species 0 1842532 1 Pelobacter sp. SFB93 0 Pelobacter carbinolicus 19 1 species 2050 Pelobacter acetylenicus 29542 1 0 species 3386 0 890 3 Desulfuromonas 98 1 7708 genus no rank 3910 2614637 1 0 Desulfuromonas sp. DDH964 1 1823759 0 species 3910 3700 species 0 1 1603606 Desulfuromonas soudanensis 0 213422 14 Geobacteraceae 274 1 40420 family 1 13 genus 4876 0 Geoalkalibacter 392332 2 483547 1 Geoalkalibacter subterraneus 0 4863 species 0 Geobacter 28231 11 1 534 genus 35270 0 Geobacter anodireducens 1 1340425 species 3472 4134 species 0 1 345632 Geobacter pickeringii 0 1 351604 Geobacter uraniireducens 2983 species species 1763 0 Geobacter daltonii 1203471 1 35554 1 Geobacter sulfurreducens 0 3150 species species 3811 0 Geobacter bemidjiensis 225194 1 3878 species 1 313985 Geobacter lovleyi 0 no rank 9238 0 2 2627627 0 443143 1 Geobacter sp. M18 5206 species 4032 species 0 1 443144 Geobacter sp. M21 species 2307 Geobacter metallireducens 1 28232 0 1 145 order 5599 0 Syntrophobacterales 213462 11 family 1665 1 17 Syntrophobacteraceae 3 213465 0 1 1 1648 genus 0 2 29526 Syntrophobacter 1647 species 119484 1 Syntrophobacter fumaroxidans 0 family 3789 1 7 Syntrophaceae 213468 7 0 0 60892 2 Desulfobacca 1 1 1400 genus 0 Desulfobacca acetoxidans 1 60893 species 1399 3 1 1458 genus 0 43773 2 Syntrophus 0 316277 1 Syntrophus aciditrophicus 1455 species genus 924 1 5 Desulfomonile 2357 2 0 919 species 1 2358 Desulfomonile tiedjei 0 0 26 213115 Desulfovibrionales 1078 1 91177 order 0 194924 18 Desulfovibrionaceae 576 1 81615 family 1 120 genus 12622 0 Pseudodesulfovibrio 2035811 4 species 2154 Pseudodesulfovibrio profundus 1 57320 0 6107 species 1 1716143 Pseudodesulfovibrio indicus 0 0 Pseudodesulfovibrio aespoeensis 1 182210 species 4241 0 2582840 1 4881 genus 0 Desulfovibrio africanus 1 873 species 4881 0 872 9 Desulfovibrio 603 1 59443 genus 0 Desulfovibrio fairfieldensis 1 44742 species 8251 species 10551 0 Desulfovibrio desulfuricans 1 876 0 58180 1 Desulfovibrio alaskensis 4342 species Candidatus Desulfovibrio trichonymphae 1725232 1 0 species 2476 0 Desulfovibrio magneticus 184917 1 species 6363 Desulfovibrio vulgaris 1 881 0 species 12142 no rank 3732 1 2593640 0 0 Desulfovibrio sp. G11 1 631220 species 3732 10983 species 0 1 901 Desulfovibrio piger 41707 2 Lawsonia 0 1128 genus 6 1 0 Lawsonia intracellularis 1 29546 species 1122 genus 2965 0 1 2794998 0 Desulfovibrio salexigens 880 1 species 2965 3 213117 Desulfohalobiaceae 0 1347 family 5 1 0 45662 2 Desulfohalobium 5 1 1342 genus species 1337 0 Desulfohalobium retbaense 1 45663 0 4 213116 Desulfomicrobiaceae 103 1 7137 family 3 898 Desulfomicrobium 0 7034 genus 61 1 species 3007 Desulfomicrobium orale 132132 1 0 3966 species 0 1 899 Desulfomicrobium baculatum class 3262 580370 5 0 Mariprofundales 580371 5 0 order 3262 1 26 580372 4 Mariprofundaceae 0 3236 family 7 1 1 26 genus 3229 0 Mariprofundus 3 377315 2118 species 1 1921086 Mariprofundus aestuarium 0 1085 species 0 1 1921087 Mariprofundus ferrinatatus 200918 42 0 11931 phylum class 11931 1 17 Thermotogae 188708 42 0 0 2419 28 Thermotogales 15 1 8612 order 0 Fervidobacteriaceae 1643950 10 1 2 family 2421 1530 genus 4 1 2420 5 Thermosipho 0 no rank 699 2 2676525 0 0 1 1437364 Thermosipho sp. 1070 353 species 346 species 0 1 1462747 Thermosipho sp. 1063 496 species 0 1 2421 Thermosipho africanus 0 1 46541 Thermosipho melanesiensis 331 species 0 Fervidobacterium 2422 4 1 4 genus 889 Fervidobacterium pennivorans 1 93466 0 species 293 216 species 2424 1 Fervidobacterium nodosum 0 0 2423 1 Fervidobacterium islandicum 376 species family 6176 1 10 Thermotogaceae 188709 17 0 0 11 2335 Thermotoga 261 1 3967 genus Thermotoga profunda 1 1508420 0 species 335 344 species 0 1 1508419 Thermotoga caldifontis species 400 Thermotoga neapolitana 1 2337 0 282 species 1 93929 Thermotoga petrophila 0 species 718 0 Thermotoga naphthophila 93930 1 0 4 2631113 no rank 1265 0 126738 1 Thermotoga sp. RQ7 383 species Thermotoga sp. RQ2 126740 1 0 species 221 277 species 1157947 1 Thermotoga sp. Cell2 0 Thermotoga sp. 2812B 1 1157948 0 species 384 Thermotoga maritima 1 2336 0 species 362 2199 genus 168 1 1643951 5 Pseudothermotoga 0 0 1 57487 Pseudothermotoga hypogea 912 species 353 species 119394 1 Pseudothermotoga thermarum 0 species 394 0 Pseudothermotoga lettingae 177758 1 0 1 38322 Pseudothermotoga elfii 372 species order 1132 1 1 Kosmotogales 1643946 7 0 1131 family 5 1 6 1643948 Kosmotogaceae 0 2 1 543 genus 0 1184396 2 Mesotoga Mesotoga prima 1184387 1 0 species 541 583 genus 1 1 651456 3 Kosmotoga 0 species 258 0 Kosmotoga olearia 651457 1 species 324 Kosmotoga pacifica 1 1330330 0 order 2170 0 6 1643947 family 2170 6 1643949 0 28236 2 Petrotoga 0 362 genus 2 1 0 Petrotoga mobilis 1 69499 species 360 0 1511648 1 279 genus 0 Defluviitoga tunisiensis 1 1006576 species 279 0 Marinitoga 3 160798 1 6 genus 1529 787 no rank 1 2640159 0 species 787 Marinitoga sp. 1137 1 1545835 0 0 Marinitoga piezophila 149715 1 species 736 2498710 3 0 clade 355 phylum 355 67814 3 0 0 3 693071 355 class 693072 3 0 355 order 0 693073 3 Caldisericaceae 2 1 355 family 1 24 genus 353 0 Caldisericum 693074 2 species 329 0 Caldisericum exile 693075 1 75145 phylum 58 203691 0 Spirochaetia 58 203692 0 class 75145 1 298 0 Spirochaetales 42 136 1 462 order 62481 58480 family 1531 1 24 137 Spirochaetaceae 0 5536 genus 80 1 146 3 Spirochaeta 0 species 2935 0 Spirochaeta thermophila 154 1 species 2521 Spirochaeta africana 1 46355 0 5 1 7285 genus 0 399320 4 Sphaerochaeta species 3287 0 Sphaerochaeta globosa 1131703 1 0 273376 1 Sphaerochaeta coccoides 2032 species 0 1131707 1 Sphaerochaeta pleomorpha 1961 species genus 40134 1 534 Treponema 157 12 0 1 167 Treponema succinifaciens 0 9733 species species 1732 0 Treponema caldarium 215591 1 species 3295 0 Treponema azotonutricium 150829 1 species 7173 0 Treponema putidum 1 221027 species 722 Treponema pedis 409322 1 0 0 2638727 1 no rank 6518 0 Treponema sp. OMZ 838 1 1539298 species 6518 2035 species 0 88058 1 Treponema primitia species 3192 Treponema denticola 158 1 0 0 160 1 Treponema pallidum 388 species species 4426 0 Treponema brennaborense 1 81028 species 386 0 Treponema paraluiscuniculi 1 53435 2437 genus 4 1 1616789 2 Salinispira 0 1 1307761 Salinispira pacifica 0 2433 species 1557 genus 7 1 2 1911556 Sediminispirochaeta 0 55206 1 Sediminispirochaeta smaragdinae 0 1550 species 0 17 1643685 Borreliaceae 8 1 3539 family 0 8 64895 Borreliella 24 1 1932 genus 0 1 664662 Borreliella bavariensis 241 species species 181 0 Borreliella valaisiana 1 62088 species 177 0 Borrelia mayonii 1 1674146 1 139 Borreliella burgdorferi 0 194 species 29519 1 Borreliella garinii 0 752 species 220 species 1 29518 Borreliella afzelii 0 0 1 64897 Borreliella bissettii 143 species 0 8 138 Borrelia 12 1 1599 genus 0 Borrelia miyamotoi 47466 1 species 516 species 130 0 Borrelia duttonii 1 40834 species 212 0 Borrelia hermsii 1 140 305 species 0 1 141 Borrelia parkeri 0 1 142 Borrelia turicatae 200 species Borrelia recurrentis 1 44449 0 species 132 species 92 0 Borrelia anserina 1 143 2 1 7925 order 0 1643686 7 Brachyspirales 0 6 143786 Brachyspiraceae 165 1 7923 family 0 5 29521 Brachyspira 1110 1 7758 genus 0 Brachyspira intermedia 84377 1 species 1369 0 84378 1 Brachyspira murdochii 1010 species species 1384 0 Brachyspira hyodysenteriae 159 1 Brachyspira pilosicoli 1 52584 0 species 2885 1643688 8 0 4441 order 4441 family 29 1 170 8 Leptospiraceae 0 0 1 338321 genus 1247 species 1247 0 Turneriella parva 29510 1 0 Leptospira 6 171 1 21 genus 3165 661 species 0 28452 1 Leptospira alstonii Leptospira interrogans 1 173 0 species 894 0 Leptospira santarosai 28183 1 species 511 809 species 0 1 174 Leptospira borgpetersenii species 269 Leptospira biflexa 1 172 0 82576 phylum 22 32066 0 0 Fusobacteriia 22 203490 1 8 class 82576 1 16 order 82568 0 Fusobacteriales 21 203491 173 1 75162 family 0 11 203492 Fusobacteriaceae 851 genus 0 1 167639 167642 1 Ilyobacter polytropus 0 851 species 848 9 Fusobacterium 0 74138 genus 219 1 0 850 1 Fusobacterium mortiferum 1629 species 0 1583098 1 Fusobacterium hwasookii 7620 species 6951 species 0 860 1 Fusobacterium periodonticum 1936 species 856 1 Fusobacterium varium 0 1437 species 0 861 1 Fusobacterium ulcerans species 1277 Fusobacterium necrophorum 1 859 0 species 1054 0 Fusobacterium gonidiaformans 849 1 species 52015 0 Fusobacterium nucleatum 851 1 0 Leptotrichiaceae 1129771 9 1 46 family 7390 genus 3727 1 3 Leptotrichia 5 32067 0 3 2633022 0 no rank 2936 0 Leptotrichia sp. oral taxon 212 712357 1 species 1087 species 743 0 Leptotrichia sp. oral taxon 498 712368 1 1106 species 0 1785996 1 Leptotrichia sp. oral taxon 847 0 1 40542 Leptotrichia buccalis 788 species genus 866 1 168808 0 Sneathia amnii 187101 1 0 species 866 1570 genus 1 34104 0 0 34105 1 Streptobacillus moniliformis 1570 species 0 32068 1 genus 1181 0 826 1 Sebaldella termitidis 1181 species Elusimicrobia 9 74152 0 phylum 2356 1 2 1 99260 0 no rank 321 0 1 167965 uncultured Termite group 1 bacterium 321 species 553 class 641853 3 0 Elusimicrobiales 3 641854 0 order 553 1 1 family 552 1 21 Elusimicrobiaceae 2 641876 0 genus 531 1 423604 0 1 423605 Elusimicrobium minutum 0 531 species 0 447830 4 class 1480 order 1480 1 1 Endomicrobiales 4 1783344 0 1 1 family 1479 0 Endomicrobiaceae 3 1783343 2 1408194 0 genus 1478 0 Endomicrobium proavitum 1 1408281 species 1121 1 1408204 Candidatus Endomicrobium trichonymphae 0 357 species 98 1783257 0 69666 clade phylum 10189 0 3 256845 1 31 class 10189 0 Lentisphaeria 1313211 3 10158 order 467 1 2 278082 Victivallales 0 0 1674876 1 9691 no rank 9691 species 0 2094242 1 Victivallales bacterium CCUG 44730 0 29 74201 Verrucomicrobia 44 1 27065 phylum 0 Opitutae 414999 11 1 287 class 12856 order 739 1 12 Puniceicoccales 3 415001 0 Puniceicoccaceae 415002 2 0 family 727 1 4 1 442430 0 723 genus 723 species 395922 1 Coraliomargarita akajimensis 0 7 415000 Opitutales 0 11830 order 349 1 204 1 11481 family 0 134623 6 Opitutaceae 0 2 1961799 Lacunisphaera 48 1 3547 genus species 3499 Lacunisphaera limnophila 1838286 1 0 1 30 genus 3045 0 Opitutus 2 178440 107709 1 Opitutus terrae 0 3015 species no rank 4685 278955 1 0 species 4685 0 Opitutaceae bacterium TAV5 794903 1 6 1955630 Methylacidiphilae 0 853 class 3 1 0 717963 5 Methylacidiphilales 3 1 850 order 1 1 847 family 0 717964 4 Methylacidiphilaceae genus 846 1 2 Methylacidiphilum 3 511745 0 1 591154 Methylacidiphilum fumariolicum 0 186 species Methylacidiphilum infernorum 1 511746 0 species 658 class 215 1 3 Spartobacteria 134549 3 0 134550 2 Candidatus Xiphinematobacter 0 212 genus 2 1 2648876 1 0 no rank 210 0 1 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 210 species 0 2 417295 4861 no rank Verrucomicrobia bacterium 2026799 1 0 species 2306 Verrucomicrobia bacterium IMCC26134 1 1637999 0 species 2555 class 8236 1 124 Verrucomicrobiae 6 203494 0 0 5 48461 Verrucomicrobiales 22 1 8112 order family 8090 1 95 Akkermansiaceae 1647988 4 0 0 239934 3 Akkermansia 51 1 7995 genus 0 Akkermansia glycaniphila 1 1679444 species 3950 3994 species 239935 1 Akkermansia muciniphila 0 5 134625 0 2288 phylum class 2288 1 19 Kiritimatiellae 5 1921781 0 0 1921782 4 Kiritimatiellales 29 1 2269 order family 2240 1 15 Kiritimatiellaceae 1921783 3 0 1921784 2 Kiritimatiella 0 2225 genus 73 1 0 Kiritimatiella glycovorans 1 1307763 species 2152 Planctomycetes 38 203682 0 phylum 27068 1 3 0 203683 27 Planctomycetia 111 1 21116 class 5 2691354 0 order 2503 776 family 0 2 2691358 genus 776 1 1 Thermogutta 2 1676125 0 775 species 1331910 1 Thermogutta terrifontis 0 0 2691357 3 family 1727 913 genus 3 1 123 2 Pirellula 0 1 125 Pirellula staleyi 0 910 species 814 genus 0 265488 1 814 species 0 1 265606 Rhodopirellula baltica 0 3 2691355 order 1607 1 2 family 1607 0 Gemmataceae 3 1914233 2 1 1605 genus 0 2 113 Gemmata 1 2622970 0 1603 no rank 1603 species 0 1630693 1 Gemmata sp. SH-PL17 order 6654 2691356 7 0 1763524 7 Isosphaeraceae 0 6654 family 78 1 2 127 Isosphaera 0 1401 genus 22 1 0 128 1 Isosphaera pallida 1379 species 2 466152 Singulisphaera 0 2207 genus 5 1 Singulisphaera acidiphila 466153 1 0 species 2202 0 Paludisphaera 2 1763521 1 80 genus 2968 species 2888 Paludisphaera borealis 1 1387353 0 0 112 11 Planctomycetales 356 1 10241 order Planctomycetaceae 10 126 0 family 9885 1 41 0 Planctomyces 118 3 1 26 genus 4941 2648843 2 0 4915 no rank 0 Planctomyces sp. SH-PL14 1632864 1 species 2000 2915 species 0 1 1636152 Planctomyces sp. SH-PL62 genus 1918 1 1 Planctopirus 1649480 2 0 1 120 Planctopirus limnophila 0 1917 species 2 1649490 Rubinisphaera 0 1409 genus 6 1 0 Rubinisphaera brasiliensis 1 119 species 1403 0 2 1936111 Fuerstia 3 1 1576 genus 1573 species 1 1891926 Fuerstia marisgermanicae 0 1 36 class 4953 0 Phycisphaerae 7 666505 1579 order 0 2 2483366 family 1579 2 2483367 0 1579 genus 0 2483368 2 786 species 0 1 1941349 Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerae bacterium L21-RPul-D3 1 1940790 0 species 793 3338 order 182 1 666506 4 Phycisphaerales 0 666507 3 Phycisphaeraceae 0 3156 family 18 1 3138 genus 24 1 2 666508 Phycisphaera 0 species 3114 0 Phycisphaera mikurensis 1 547188 2517206 3 0 996 class 996 order 29 1 1127829 3 Candidatus Brocadiales 0 1127830 2 Candidatus Brocadiaceae 0 967 family 1 1 genus 966 1 380738 0 Candidatus Kuenenia stuttgartiensis 174633 1 0 species 966 phylum 3056 204428 23 0 24 1 3056 class 0 204429 23 Chlamydiia 1963360 8 Parachlamydiales 0 856 order 3 1 0 Waddliaceae 92714 3 1 2 family 197 1 1 genus 195 0 Waddlia 2 71666 species 194 0 Waddlia chondrophila 1 71667 92713 3 0 415 family 259 genus 2 1 2 282132 Candidatus Protochlamydia 0 0 389348 1 Candidatus Protochlamydia naegleriophila 257 species 83551 1 0 genus 156 0 Parachlamydia acanthamoebae 1 83552 species 156 family 241 0 92712 1 0 34093 1 genus 241 Simkania negevensis 83561 1 0 species 241 0 Chlamydiales 51291 14 1 7 order 2176 family 2169 1 2 Chlamydiaceae 809 13 0 no rank 2167 0 1113537 12 Chlamydia 810 12 0 genus 2167 1 146 0 Chlamydia pneumoniae 1 83558 species 113 270 species 0 83556 1 Chlamydia felis species 175 0 Chlamydia trachomatis 813 1 0 Chlamydia gallinacea 1 1457153 species 266 Chlamydia avium 1457141 1 0 species 232 species 62 0 Chlamydia caviae 1 83557 104 species 0 1 85991 Chlamydia pecorum species 134 0 Chlamydia psittaci 1 83554 0 Chlamydia abortus 83555 1 species 253 1 83560 Chlamydia muridarum 0 198 species 214 species 1 83559 Chlamydia suis 0 name 1 0 0