members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4784 8777813 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 12192 1 0 name 0 superkingdom 2157 0 306 55887 69 1783275 0 clade 8907 4387 48 0 28889 phylum Thermoprotei 1 4387 class 5 0 183924 48 462 order 0 871006 4 2 0 255472 family 400 Caldisphaera 400 1 genus 8 200414 0 2 Caldisphaera lagunensis 392 species 0 200415 1 62 2 0 871007 family Acidilobus 62 1 105850 0 1 genus 2 1 species 0 242703 61 Acidilobus saccharovorans Sulfolobales 2227 1 2281 0 order 2 13 1 2225 Sulfolobaceae 12 6 family 118883 0 genus 2 12914 0 2 Acidianus 1 262 1 563177 0 species 260 Acidianus hospitalis 0 2100760 genus 1 324 324 Sulfolobus solfataricus 1 0 2287 species 1 972 Sulfolobus 4 2284 0 18 genus 1 no rank 0 2641160 247 Sulfolobus sp. A20 247 species 1891280 0 1 493 Sulfolobus islandicus 1 43080 0 species Sulfolobus acidocaldarius 214 0 2285 species 1 Metallosphaera 1 212 41980 0 1 genus 3 1006005 0 species 1 Metallosphaera cuprina 117 94 Metallosphaera sedula 1 species 43687 0 449 0 69655 genus 1 0 111955 species 1 Sulfolobus tokodaii 449 114380 0 order 4 17 Desulfurococcales 932 1 0 2272 10 family 11 Desulfurococcaceae 676 1 43 1 0 54253 genus Thermosphaera aggregans 43 species 0 54254 1 477695 0 6 genus 2 Thermogladius 59 1 1 1200300 0 species 53 Thermogladius calderae 115 2 genus 0 54258 1 160233 0 species 51 Ignicoccus hospitalis 1 54259 0 species 64 Ignicoccus islandicus genus 6 0 2279 3 Staphylothermus 1 351 128 Staphylothermus hellenicus 1 0 84599 species 1 species 0 2280 217 Staphylothermus marinus 98 0 2273 genus 2 28 Desulfurococcus mucosus 1 species 0 2275 Desulfurococcus amylolyticus 70 species 0 94694 1 5 2307 0 7 family 1 252 Pyrodictiaceae 75 1 genus 0 54251 0 54252 species 1 Pyrolobus fumarii 75 genus 8 2308 0 2 Pyrodictium 56 1 1 1273541 0 species 48 Pyrodictium delaneyi 1 genus 0 54247 114 species 0 54248 1 Hyperthermus butylicus 114 order 4 2266 0 13 Thermoproteales 761 1 family 0 114378 5 258 1 258 Thermofilum 5 13 genus 0 2268 2269 0 species 1 Thermofilum pendens 48 1 1483572 0 species 67 Thermofilum carboxyditrophus Thermofilum uzonense 64 species 1550241 0 1 Thermofilum adornatus 66 0 1365176 species 1 499 7 family 0 2267 Thermoproteus 1 105 0 2270 2 genus 3 Thermoproteus tenax 48 species 2271 0 1 Thermoproteus uzoniensis 55 0 184117 species 1 61 genus 0 2276 1 2277 0 species 1 Pyrobaculum islandicum 61 0 164450 genus 2 236 135 Vulcanisaeta moutnovskia 1 0 985052 species 164451 0 species 1 Vulcanisaeta distributa 101 97 1 genus 0 76886 76887 0 species 1 Caldivirga maquilingensis 97 1 4459 Thaumarchaeota 20 phylum 1 651137 0 1599 1 Nitrosopumilales 7 0 31932 3 order Nitrosopumilaceae 1 1596 3 family 338190 0 6 915 1 Nitrosopumilus 3 0 338191 genus 5 Candidatus Nitrosopumilus sediminis 436 0 1229909 species 1 Candidatus Nitrosopumilus adriaticus 474 0 1580092 species 1 678 1 Candidatus Nitrosomarinus 2 genus 2 1993653 0 676 Candidatus Nitrosomarinus catalina 1 species 1898749 0 828 no rank 0 651142 5 3 1825023 0 genus 3 304 1 Candidatus Nitrosotenuis 159 Candidatus Nitrosotenuis cloacae 1 species 1603555 0 1 1846278 0 species 142 Candidatus Nitrosotenuis sp. AQ6f genus 7 1593364 0 2 Candidatus Nitrosopelagicus 1 524 1 species 1410606 0 517 Candidatus Nitrosopelagicus brevis Nitrososphaeria 2031 1 1643678 0 8 class 7 1033996 0 order 1 4 Nitrososphaerales 776 1 1 775 Nitrososphaeraceae 3 1 family 1033997 0 2 genus 2 497726 0 1 774 Nitrososphaera 1 species 0 1034015 772 Nitrososphaera viennensis 0 1968909 order 2 1247 1247 family 0 1968910 2 1 1247 Candidatus Nitrosocaldus 2 2 genus 498374 0 species 2045011 0 1 Candidatus Nitrosocaldus islandicus 1245 0 51967 phylum 1 61 1 genus 0 498845 61 1 0 498846 species 61 Candidatus Korarchaeum cryptofilum 58 1 0 1783276 clade 1 phylum 0 1801631 58 1 genus 2490204 0 58 1 1920749 0 species 58 Candidatus Micrarchaeota archaeon Mia14 0 28890 phylum 236 46922 876 1 Archaeoglobi 13 2 class 0 183980 874 1 Archaeoglobales 12 order 2 0 2231 11 0 2232 4 family 1 872 Archaeoglobaceae 5 4 genus 0 2233 1 490 Archaeoglobus Archaeoglobus sulfaticallidus 129 1316941 0 species 1 species 0 2234 1 Archaeoglobus fulgidus 123 102 Archaeoglobus veneficus 1 58290 0 species 84156 0 species 1 Archaeoglobus profundus 132 150 1 Ferroglobus 2 4 genus 54260 0 Ferroglobus placidus 146 54261 0 species 1 Geoglobus 1 228 1 genus 190818 0 3 0 565033 species 1 Geoglobus acetivorans 116 1 0 113653 species 111 Geoglobus ahangari clade 0 2283796 24 2876 Thermoplasmata 2549 1 183967 0 5 class 21 Thermoplasmatales 1 1538 0 2301 order 10 13 1 family 1747776 0 3 Cuniculiplasmataceae 1 362 2 12 genus 1747777 0 361 1 Cuniculiplasma 349 Cuniculiplasma divulgatum 1 1673428 0 species family 0 46630 2 219 219 1 Picrophilus 2 46631 0 2 genus 217 Picrophilus torridus 1 82076 0 species 0 90142 family 3 518 1 518 Ferroplasma 3 74968 0 genus 5 97393 0 species 1 Ferroplasma acidarmanus 257 74969 0 species 1 Ferroplasma acidiphilum 256 192 1 0 1919231 no rank 1 species 1054217 0 192 Thermoplasmatales archaeon BRNA1 3 46659 0 family 237 Thermoplasma 1 237 2302 0 4 genus 3 species 0 50339 1 Thermoplasma volcanium 108 species 2303 0 1 Thermoplasma acidophilum 125 Methanomassiliicoccales 1 857 1235850 0 order 3 6 4 family 7 1577788 0 661 1 Methanomassiliicoccaceae Methanomassiliicoccus 1 467 0 1080709 genus 3 2 0 1406512 species 1 Candidatus Methanomassiliicoccus intestinalis 464 genus 0 1607807 1 187 187 Candidatus Methanoplasma termitum 1 1577791 0 species 0 2517203 family 1 193 193 0 1291539 genus 1 193 Candidatus Methanomethylophilus alvus 1 species 0 1291540 no rank 0 1234666 1 149 species 0 1495144 1 methanogenic archaeon ISO4-H5 149 327 clade 0 1803510 3 3 0 379546 genus 5 1 327 Aciduliprofundum 0 379547 species 1 Aciduliprofundum boonei 205 no rank 0 2633939 1 117 Aciduliprofundum sp. MAR08-339 117 673860 0 species 1 25604 115 0 2290931 clade 7 class 224756 0 52 Methanomicrobia 1 9524 2 order 570264 0 4 Methanocellales 1 438 436 0 570265 family 3 Methanocella 436 1 10 genus 0 570266 3 Methanocella arvoryzae 298 1175445 0 species 1 128 Methanocella conradii 1 0 1175444 species Methanosarcinales 1 7750 0 94695 23 order 29 434 family 143067 0 3 Methanothrix 434 1 6 genus 2222 0 3 226 Methanothrix soehngenii 1 species 2223 0 1 species 0 301375 202 Methanosaeta harundinacea 25 0 2206 9 family 1 7293 Methanosarcinaceae 3 0 2225 genus 3 454 1 Methanococcoides Methanococcoides burtonii 206 29291 0 species 1 245 Methanococcoides methylutens 1 2226 0 species 284 1 0 196136 genus species 39669 0 1 Methanosalsum zhilinae 284 438 0 2321 genus 1 1 species 0 2322 438 Methanohalobium evestigatum Methanosarcina 5428 1 20 genus 0 2207 13 4 0 2644672 no rank 1273 1434100 0 species 1 Methanosarcina sp. MTP4 421 species 0 1434102 1 Methanosarcina sp. WH1 254 1 0 1434099 species 352 Methanosarcina sp. Kolksee 1 0 1434103 species 246 Methanosarcina sp. WWM596 1 0 2210 species 263 Methanosarcina thermophila 1 170861 0 species 375 Methanosarcina lacustris Methanosarcina mazei 571 species 0 2209 1 1 species 418008 0 319 Methanosarcina horonobensis species 2208 0 1 Methanosarcina barkeri 1302 647 Methanosarcina siciliae 1 species 0 38027 1 species 2215 0 366 Methanosarcina vacuolata 292 Methanosarcina acetivorans 1 2214 0 species 2 0 101191 genus 5 163 1 Methanomethylovorans 1 species 0 101192 158 Methanomethylovorans hollandica 154 2220 0 genus 1 species 420950 0 1 Methanolobus psychrophilus 154 1 363 Methanohalophilus 3 0 2175 genus 2 Methanohalophilus mahii 190 species 0 2176 1 Methanohalophilus halophilus 171 2177 0 species 1 Methanomicrobiales 1329 1 order 12 0 2191 18 2 family 0 88404 115 2 0 2192 genus 6 115 1 Methanocorpusculum species 0 83984 1 Methanocorpusculum labreanum 109 2 0 196137 family 192 12 genus 0 2202 2 Methanospirillum 192 1 1 0 2203 species 180 Methanospirillum hungatei family 10 1198451 0 6 Methanoregulaceae 358 1 214 1 Methanoregula 3 395331 0 genus 3 1 species 882104 0 97 Methanoregula formicica 114 Methanoregula boonei 1 species 0 358766 475087 0 genus 2 2 Methanosphaerula 1 134 132 Methanosphaerula palustris 1 475088 0 species 7 0 2194 6 family 652 1 Methanomicrobiaceae 0 230355 7 genus 2 Methanolacinia 1 174 1 species 54120 0 167 Methanolacinia petrolearia 4 45989 0 10 genus 1 472 Methanoculleus 155 Methanoculleus marisnigri 1 0 2198 species 136 1 0 2619537 no rank Methanoculleus sp. MAB1 136 species 0 86622 1 171 Methanoculleus bourgensis 1 0 83986 species 16080 1 Halobacteria 63 43 class 0 183963 0 2235 27 order 25 Halobacteriales 2853 1 1011 9 0 2236 family 4 genus 4 2239 0 1 678 Halobacterium 261 Halobacterium hubeiense 1 species 0 1407499 183 Halobacterium salinarum 1 species 0 2242 2668073 0 no rank 1 230 751944 0 species 1 Halobacterium sp. DL1 230 332246 0 genus 1 2 Halalkalicoccus 1 176 413810 0 species 1 Halalkalicoccus jeotgali 175 Halanaeroarchaeum 1 66 1656823 0 3 genus 2 Halanaeroarchaeum sulfurireducens 63 species 1604004 0 1 91 genus 1980514 0 1 1 species 1873524 0 91 Halodesulfurarchaeum formicicum 1963268 0 family 2 15 Haloarculaceae 1815 1 2 2 genus 0 1073987 236 1 Halorientalis no rank 0 2648975 1 234 species 1932360 0 1 Halorientalis sp. IM1011 234 63743 0 genus 1 3 Natronomonas 430 1 Natronomonas moolapensis 220 416273 0 species 1 Natronomonas pharaonis 209 species 2257 0 1 Haloarcula 651 1 8 genus 2237 0 5 170 1 2624677 0 no rank Haloarcula sp. CBA1115 170 1592728 0 species 1 0 1932004 species 1 Haloarcula taiwanensis 171 species 0 51589 1 Haloarcula hispanica 150 1 0 2238 species 152 Haloarcula marismortui Halomicrobium 190 1 genus 3 203135 0 2 species 0 57705 1 Halomicrobium mukohataei 187 2 genus 0 146825 306 1 species 0 146826 138 Halorhabdus utahensis species 430914 0 1 Halorhabdus tiamatea 168 Haloferacales 6324 1 74 order 1644055 0 19 252 1 no rank 0 2678336 756883 0 species 1 halophilic archaeon DL31 252 0 1644056 33 family 9 Haloferacaceae 1 4839 1 223 Halogeometricum 2 11 genus 60846 0 species 60847 0 1 Halogeometricum borinquense 212 2 genus 7 293431 0 1 3409 Haloquadratum species 0 293091 1 Haloquadratum walsbyi 3402 1 1174 Haloferax 4 2251 0 genus 9 1 2252 0 species 219 Haloferax mediterranei species 35746 0 1 Haloferax gibbonsii 438 508 Haloferax volcanii 1 species 2246 0 Halorubraceae 1159 1 0 1963271 9 family 8 Halorubrum 474 1 1 genus 0 56688 3 Halorubrum trapanicum 273 0 29284 species 1 Halorubrum lacusprofundi 200 0 2247 species 1 1 434 Salinigranum 2 genus 3 0 1644057 0 755307 species 1 Salinigranum rubrum 431 genus 4 1209988 0 2 Halopenitus 242 1 238 Halopenitus persicus 1 0 1048396 species 66 order 0 1644060 18 Natrialbales 1 6860 Natrialbaceae 6794 1 0 1644061 family 28 17 0 203193 genus 1 690 0 229731 species 1 Halobiforma lacisalsi 690 1 387342 0 genus 376 376 Halopiger xanaduensis 1 387343 0 species 1 3432 Natrialba 2 genus 6 63742 0 species 0 13769 1 Natrialba magadii 3426 2 genus 1 2256 0 1 247 Natronobacterium Natronobacterium gregoryi 246 0 44930 species 1 3 0 88723 genus 3 477 1 Natrinema Natrinema pellirubrum 281 0 69525 species 1 1 no rank 0 2622230 193 1 0 406552 species 193 Natrinema sp. J7-2 2 genus 1 29287 0 1 263 Natronococcus 262 Natronococcus occultus 1 species 29288 0 2 genus 0 121871 859 331 Haloterrigena turkmenica 1 0 62320 species Haloterrigena daqingensis 528 588898 0 species 1 genus 0 1269201 1 210 1 0 2621923 no rank 210 Salinarchaeum sp. Harcht-Bsk1 210 0 1333523 species 1 Halostagnicola 1 212 353799 0 genus 2 2 1 353800 0 species 210 Halostagnicola larsenii 13625 44 0 2283794 clade 1 7101 Methanococci 19 0 183939 1 class 7100 1 Methanococcales 18 order 5 2182 0 196117 0 3 family 10 Methanocaldococcaceae 1 3173 518 1 Methanotorris 2 8 genus 196119 0 Methanotorris igneus 510 2189 0 species 1 Methanocaldococcus 2652 1 23 genus 196118 0 7 no rank 0 2641196 1 449 Methanocaldococcus sp. FS406-22 449 644281 0 species 1 0 83171 species 1 Methanocaldococcus fervens 440 Methanocaldococcus vulcanius 480 0 73913 species 1 species 0 67760 1 Methanocaldococcus infernus 329 1 species 0 2190 439 Methanocaldococcus jannaschii 492 Methanocaldococcus bathoardescens 1 species 1301915 0 3 family 2183 0 7 Methanococcaceae 1 3922 5 0 2184 5 genus 1 3507 Methanococcus 433 Methanococcus vannielii 1 0 2187 species 1932 Methanococcus maripaludis 1 0 39152 species 1 42879 0 species 442 Methanococcus aeolicus 695 Methanococcus voltae 1 species 0 2188 1 genus 155862 0 412 species 155863 0 1 Methanothermococcus okinawensis 412 6524 1 Methanobacteria 25 0 183925 class 10 1 6514 Methanobacteriales 24 11 order 0 2158 491 0 2178 family 1 491 1 genus 0 2179 491 Methanothermus fervidus 1 species 0 2180 1 6012 Methanobacteriaceae 22 family 2 0 2159 1 3216 Methanobrevibacter 7 2172 0 6 genus 1 0 2173 species 597 Methanobrevibacter smithii Methanobrevibacter olleyae 715 species 294671 0 1 837 no rank 2638681 0 2 451 Methanobrevibacter sp. AbM4 1 224719 0 species 386 Methanobrevibacter sp. YE315 1 species 0 1609968 405 Methanobrevibacter ruminantium 1 83816 0 species 656 Methanobrevibacter millerae 1 0 230361 species 1 344 Methanothermobacter 5 genus 9 0 145260 106 no rank 2631116 0 1 Methanothermobacter sp. CaT2 106 species 866790 0 1 58 Methanothermobacter wolfeii 1 145261 0 species 1 species 145262 0 67 Methanothermobacter thermautotrophicus 1 145263 0 species 104 Methanothermobacter marburgensis 1 1811 Methanobacterium 8 genus 18 2160 0 1 118062 0 species 276 Methanobacterium congolense Methanobacterium lacus 379 species 0 877455 1 no rank 2627676 0 2 377 177 Methanobacterium sp. MZ-A1 1 1911685 0 species Methanobacterium sp. MB1 200 0 1379702 species 1 species 0 868131 1 Methanobacterium paludis 337 Methanobacterium formicicum 262 2162 0 species 1 162 Methanobacterium subterraneum 1 59277 0 species 0 2316 genus 1 639 639 Methanosphaera stadtmanae 1 species 2317 0 class 1 0 183968 40 Thermococci 3941 1 3940 39 order 0 2258 39 2259 0 2 family 1 3940 Thermococcaceae 159 genus 0 83867 1 1 971279 0 species 159 Palaeococcus pacificus 29 genus 31 0 2263 3075 1 Thermococcus 0 71997 species 1 Thermococcus gorgonarius 38 Thermococcus barophilus 232 55802 0 species 1 1 species 0 277988 61 Thermococcus thioreducens Thermococcus peptonophilus 39 53952 0 species 1 131 Thermococcus litoralis 1 species 0 2265 Thermococcus gammatolerans 60 187878 0 species 1 Thermococcus onnurineus 43 species 342948 0 1 0 72803 species 1 Thermococcus siculi 1046 1 species 172049 0 184 Thermococcus sibiricus species 0 187880 1 Thermococcus radiotolerans 47 Thermococcus profundus 56 49899 0 species 1 1 0 110164 species 43 Thermococcus guaymasensis 1 0 71998 species 30 Thermococcus pacificus 49 Thermococcus celer 1 species 0 2264 62 Thermococcus cleftensis 1 163003 0 species species 54077 0 1 Thermococcus barossii 42 1712654 0 species 1 Thermococcus piezophilus 37 203 Thermococcus paralvinellae 1 species 582419 0 1 species 0 195522 69 Thermococcus nautili Thermococcus chitonophagus 105 species 0 54262 1 6 no rank 0 2627626 368 1 species 122420 0 29 Thermococcus sp. P6 116 Thermococcus sp. 2319x1 1 0 1674923 species Thermococcus sp. AM4 69 species 246969 0 1 1 species 1042877 0 63 Thermococcus sp. 4557 44 Thermococcus sp. EXT12c 1 0 2016361 species species 2008440 0 1 Thermococcus sp. 5-4 47 Thermococcus eurythermalis 62 0 1505907 species 1 1 0 311400 species 37 Thermococcus kodakarensis 704 1 Pyrococcus 8 2260 0 genus 18 Pyrococcus horikoshii 108 0 53953 species 1 Pyrococcus furiosus 129 2261 0 species 1 Pyrococcus abyssi 72 species 29292 0 1 0 1609559 species 1 Pyrococcus kukulkanii 74 258 no rank 2629106 0 2 101 Pyrococcus sp. NA2 1 species 342949 0 1 1183377 0 species 157 Pyrococcus sp. ST04 Pyrococcus yayanosii 45 species 0 1008460 1 8709734 1 Bacteria 4446 0 2 superkingdom 31 1668 clade 0 1783272 6813883 1 235996 Actinobacteria 636 0 201174 14 phylum 793 class 1760 0 586 Actinobacteria 226255 1 4 0 85014 2 order 1 546 Glycomycetales 544 1 Glycomycetaceae 3 85034 0 family 48 Stackebrandtia 496 1 genus 2 0 283810 2 494 Stackebrandtia nassauensis 1 283811 0 species 7 0 85013 48 order 1 4323 Frankiales 4275 1 Frankiaceae 6 52 family 74712 0 4223 1 Frankia 5 0 1854 genus 39 809 1 no rank 0 2632575 1 species 298653 0 809 Frankia sp. EAN1pec species 0 1859 1 Frankia alni 1836 Frankia casuarinae 745 species 106370 0 1 794 Frankia inefficax 1 species 298654 0 2745 1 Actinomycetales 18 8 order 0 2037 42 family 2049 0 17 Actinomycetaceae 1 2737 28263 0 genus 4 2 Arcanobacterium 1 167 species 0 28264 1 Arcanobacterium haemolyticum 163 158 1 0 1069494 genus species 0 1661 1 Trueperella pyogenes 158 1876 1 Actinomyces 9 1654 0 65 genus Actinomyces radicidentis 421 0 111015 species 1 189 Actinomyces gaoshouyii 1 species 0 1960083 Actinomyces oris 233 species 544580 0 1 3 no rank 0 2609248 804 1851395 0 species 1 Actinomyces sp. Chiba101 253 220 Actinomyces sp. oral taxon 897 1 species 0 2081702 331 Actinomyces sp. oral taxon 414 1 species 712122 0 species 0 1852377 1 Actinomyces pacaensis 84 1 species 1912795 0 80 Actinomyces sp. VUL4_3 Mobiluncus 1 217 genus 1 0 2050 2 216 Mobiluncus curtisii 1 species 2051 0 1 genus 0 1653174 134 species 0 59505 1 Actinotignum schaalii 134 genus 0 2529408 1 143 1 0 52773 species 143 Actinomyces meyeri 307 order 0 622450 2 2 family 0 622451 307 Actinopolyspora 1 307 1 genus 0 1849 2 1 species 0 414996 306 Actinopolyspora erythraea 1 4507 Candidatus Nanopelagicales 12 0 2039638 23 order 0 2162846 family 11 4484 7 622681 0 genus 16 2215 1 Candidatus Planktophila 332 Candidatus Planktophila vernalis 1 species 0 1884907 Candidatus Planktophila limnetica 467 species 0 573600 1 406 Candidatus Planktophila versatilis 1 species 0 1884905 0 1884904 species 1 Candidatus Planktophila sulfonica 221 413 Candidatus Planktophila dulcis 1 0 1884914 species 1 1884913 0 species 360 Candidatus Planktophila lacus 2269 1 Candidatus Nanopelagicus 4 23 genus 2039639 0 1 species 0 1884634 751 Candidatus Nanopelagicus limnes 673 Candidatus Nanopelagicus hibericus 1 1884915 0 species Candidatus Nanopelagicus abundans 822 1884916 0 species 1 Corynebacteriales 50194 1 order 245 85007 0 160 218 1 Segniliparaceae 2 2 family 316606 0 216 0 286801 genus 1 Segniliparus rotundus 216 species 0 286802 1 Nocardiaceae 13722 1 85025 0 68 family 31 7 32 genus 0 1817 1 3924 Nocardia Nocardia terpenica 499 species 455432 0 1 601 Nocardia farcinica 1 0 37329 species 1 species 37330 0 471 Nocardia nova species 37332 0 1 Nocardia seriolae 425 135487 0 species 1 Nocardia cyriacigeorgica 793 Nocardia brasiliensis 1103 0 37326 species 1 9730 1 Rhodococcus 23 273 genus 1827 0 511 Rhodococcus aetherivorans 1 191292 0 species 0 103816 species 1 Rhodococcus pyridinivorans 538 3920 12 0 192944 no rank 235 Rhodococcus sp. 008 1 species 0 1723645 1 1033922 0 species 548 Rhodococcus sp. WB1 401 Rhodococcus sp. p52 1 species 935199 0 species 0 1727214 1 Rhodococcus sp. H-CA8f 258 276 Rhodococcus sp. YL-1 1 species 0 1045808 195 Rhodococcus sp. WMMA185 1 species 0 679318 1 species 1653478 0 347 Rhodococcus sp. PBTS 1 Rhodococcus sp. B7740 282 1564114 0 species 1 species 0 1805827 1 Rhodococcus sp. MTM3W5.2 567 Rhodococcus sp. PBTS 2 256 species 0 1653479 1 Rhodococcus sp. 2G 351 species 1570939 0 1 Rhodococcus sp. BH4 204 0 1807790 species 1 1 0 1830 species 587 Rhodococcus ruber 1323 Rhodococcus opacus 1 species 0 37919 0 1829 species 1 Rhodococcus rhodochrous 393 1 species 1833 0 525 Rhodococcus erythropolis Rhodococcus fascians 369 1828 0 species 1 Rhodococcus hoagii 429 species 43767 0 1 0 132919 species 1 Rhodococcus jostii 574 species 0 334542 1 Rhodococcus qingshengii 288 Corynebacteriaceae 10338 1 0 1653 25 family 52 Corynebacterium 1 10313 0 1716 142 genus 51 0 1404244 species 1 Corynebacterium glyciniphilum 146 253 no rank 0 2624378 2 111 Corynebacterium sp. ATCC 6931 1 species 1487956 0 1 species 0 702967 142 Corynebacterium sp. NML98-0116 Corynebacterium marinum 264 species 349751 0 1 Corynebacterium kutscheri 194 species 35755 0 1 1 1718 0 species 413 Corynebacterium glutamicum 175 Corynebacterium urealyticum 1 species 0 43771 300 Corynebacterium variabile 1 species 0 1727 189 Corynebacterium crudilactis 1 species 1652495 0 225326 0 species 1 Corynebacterium halotolerans 275 181 Corynebacterium callunae 1 species 1721 0 [Brevibacterium] flavum 167 species 0 92706 1 160 Corynebacterium ulcerans 1 65058 0 species 211 Corynebacterium deserti 1 0 1408191 species 1 species 0 187491 127 Corynebacterium glaucum 89154 0 species 1 Corynebacterium terpenotabidum 221 180 Corynebacterium testudinoris 1 species 0 136857 Corynebacterium efficiens 189 0 152794 species 1 Corynebacterium humireducens 295 0 1223514 species 1 0 169292 species 1 Corynebacterium aurimucosum 117 1 species 191610 0 136 Corynebacterium atypicum 0 401472 species 1 Corynebacterium ureicelerivorans 152 147 Corynebacterium pseudotuberculosis 1 species 1719 0 1 species 0 156978 145 Corynebacterium imitans 123 Corynebacterium simulans 1 species 146827 0 1 161896 0 species 108 Corynebacterium camporealensis Corynebacterium frankenforstense 280 1230998 0 species 1 136 Corynebacterium mustelae 1 0 571915 species 158 Corynebacterium falsenii 1 species 0 108486 1 species 203263 0 213 Corynebacterium aquilae 125 Corynebacterium casei 1 160386 0 species species 0 191493 1 Corynebacterium sphenisci 268 160 Corynebacterium doosanense 1 species 0 1121358 1 species 575200 0 222 Corynebacterium maris 42817 0 species 1 Corynebacterium argentoratense 140 Corynebacterium flavescens 136 species 0 28028 1 101 Corynebacterium resistens 1 species 0 258224 species 1072256 0 1 Corynebacterium uterequi 1338 1 0 38289 species 207 Corynebacterium jeikeium 1705 0 species 1 Corynebacterium stationis 138 1 1717 0 species 263 Corynebacterium diphtheriae 102 Corynebacterium singulare 1 species 0 161899 1 species 0 161879 92 Corynebacterium kroppenstedtii 1 species 0 35757 228 Corynebacterium cystitidis Corynebacterium ammoniagenes 68 species 0 1697 1 species 43770 0 1 Corynebacterium striatum 279 1231000 0 species 1 Corynebacterium lactis 124 Corynebacterium phocae 112 species 161895 0 1 107 Corynebacterium epidermidicanis 1 1050174 0 species 1 0 38305 species 306 Corynebacterium vitaeruminis 153 697024 0 no rank 1 153 1 0 1847725 genus Lawsonella clevelandensis 153 species 0 1528099 1 1 974 Tsukamurellaceae 4 family 1 0 85028 1 973 Tsukamurella 3 7 genus 0 2060 600 Tsukamurella tyrosinosolvens 1 species 0 57704 366 Tsukamurella paurometabola 1 species 0 2061 1 679 Dietziaceae 4 family 3 0 85029 3 37914 0 4 genus 676 1 Dietzia 417 2617939 0 no rank 1 0 712270 species 1 Dietzia sp. oral taxon 368 417 Dietzia timorensis 255 species 0 499555 1 56 1762 0 family 52 1 21347 Mycobacteriaceae 242 697025 0 genus 1 Hoyosella subflava 242 0 639313 species 1 5 genus 0 670516 2973 2068 Mycobacterium abscessus 1 0 36809 species 1 1578165 0 species 211 Mycobacterium saopaulense Mycobacterium stephanolepidis 208 species 0 1520670 1 1 0 1774 species 241 Mycobacterium chelonae 1 species 83262 0 245 Mycobacterium immunogenum Mycobacterium 1 11540 genus 597 1763 0 34 1 species 0 1809 358 Mycobacterium ulcerans 1031 0 77643 species group 4 822 1 Mycobacterium tuberculosis 3 1773 0 299 species 1 biotype 33894 0 257 Mycobacterium africanum Mycobacterium bovis 266 1765 0 biotype 1 1 78331 0 species 209 Mycobacterium canettii 1 261524 0 species 391 Mycobacterium liflandii 722 Mycobacterium marinum 1 1781 0 species 89 Mycobacterium leprae 1 1769 0 species 555 Mycobacterium dioxanotrophicus 1 species 482462 0 207 Mycobacterium haemophilum 1 0 29311 species 13 no rank 0 2642494 4368 Mycobacterium sp. EPa45 289 0 1545728 species 1 1 164756 0 species 350 Mycobacterium sp. MCS Mycobacterium sp. JLS 345 species 164757 0 1 Mycobacterium sp. MOTT36Y 158 0 1168287 species 1 1 species 212767 0 541 Mycobacterium sp. JS623 372 Mycobacterium sp. KMS 1 species 0 189918 196 Mycobacterium sp. QIA-37 1 species 0 1561223 species 0 1570328 1 Mycobacterium sp. NRRL B-3805 318 1 species 1682113 0 369 Mycobacterium sp. YC-RL4 1 species 1920667 0 341 Mycobacterium sp. WY10 305 Mycobacterium sp. VKM Ac-1817D 1 0 1273687 species species 0 2051552 1 Mycobacterium sp. PYR15 352 1 1879023 0 species 432 Mycobacterium sp. djl-10 8 species group 0 120793 2539 Mycobacterium avium 939 species 0 1764 1 1 953 Mycobacterium intracellulare 4 1767 0 species 222 Mycobacterium indicus pranii 129 0 35617 subspecies 1 399 Mycobacterium chimaera 1 subspecies 0 222805 203 Mycobacterium yongonense 1 0 1203599 subspecies 189 Mycobacterium marseillense 1 0 701042 species Mycobacterium paraintracellulare 124 1138383 0 species 1 334 Mycobacterium colombiense 1 339268 0 species species group 0 2249310 1 307 Mycobacterium shigaense 307 species 0 722731 1 species 1768 0 1 Mycobacterium kansasii 376 800 1073531 0 genus 2 species 1788 0 1 Mycobacterium terrae 388 1 species 875328 0 412 Mycobacterium sinense genus 1866885 0 13 5740 1 1795 0 species 318 Mycobacterium neoaurum 1 species 0 134601 437 Mycobacterium goodii Mycobacterium gilvum 664 0 1804 species 1 Mycobacterium thermoresistibile 315 1797 0 species 1 Mycobacterium aurum 510 species 1791 0 1 1 1771 0 species 483 Mycobacterium phlei Mycobacterium smegmatis 511 species 0 1772 1 Mycobacterium vanbaalenii 472 species 0 110539 1 1 species 1800 0 511 Mycobacterium chubuense 0 36814 species 1 Mycobacterium rhodesiae 354 303 Mycobacterium fortuitum 1 species 1766 0 351 Mycobacterium litorale 1 0 758802 species 0 1810 species 1 Mycobacterium vaccae 511 2518 1 Gordoniaceae 9 0 85026 11 family 8 2053 0 genus 33 1 2507 Gordonia species 1004901 0 1 Gordonia iterans 358 371 Gordonia bronchialis 1 2054 0 species 337 Gordonia phthalatica 1 0 1136941 species 643 2 no rank 2657482 0 0 337191 species 1 Gordonia sp. KTR9 373 Gordonia sp. YC-JH1 270 2059875 0 species 1 1 0 2055 species 368 Gordonia terrae species 84595 0 1 Gordonia polyisoprenivorans 397 3151 1 Catenulisporales 4 0 414714 7 order family 9 0 414877 3 Catenulisporaceae 3144 1 Catenulispora 3135 1 0 414878 5 genus 2 Catenulispora acidiphila 3130 species 0 304895 1 345 no rank 0 1643818 2 1 345 Thermobispora 2 0 147067 genus 4 1 species 2006 0 341 Thermobispora bispora Pseudonocardiales 1 19275 85010 0 19 order 41 40 0 2070 family 133 19256 1 Pseudonocardiaceae 2 genus 12 0 43356 657 1 Kutzneria species 0 43357 1 Kutzneria albida 645 2 3 genus 1835 0 1 654 Saccharopolyspora species 1836 0 1 Saccharopolyspora erythraea 651 674734 0 genus 3 2 Alloactinosynnema 1 558 no rank 0 2636053 1 555 555 Alloactinosynnema sp. L-07 1 0 1653480 species Lentzea 806 1 0 165301 genus 1 2 1 species 1586287 0 805 Lentzea guizhouensis 2 genus 2 0 2029 1 720 Kibdelosporangium 718 Kibdelosporangium phytohabitans 1 species 860235 0 6 genus 44 0 65496 1 2880 Actinoalloteichus 2 no rank 2644606 0 1096 1 species 0 2072503 507 Actinoalloteichus sp. AHMU CJ021 589 Actinoalloteichus sp. GBA129-24 1 species 1612551 0 633 Actinoalloteichus hoggarensis 1 0 1470176 species 751 Actinoalloteichus sp. ADI127-7 1 species 1612552 0 Actinoalloteichus hymeniacidonis 356 species 0 340345 1 genus 13 0 40566 3 Actinosynnema 1 1668 species 0 42197 1 Actinosynnema pretiosum 804 Actinosynnema mirum 851 species 40567 0 1 2 genus 2 0 142577 474 1 Prauserella Prauserella marina 472 530584 0 species 1 8 genus 62 1847 0 5021 1 Pseudonocardia 0 240495 species 1 Pseudonocardia dioxanivorans 760 6 0 2619320 no rank 4199 1 0 1688404 species 807 Pseudonocardia sp. EC080610-09 species 0 1690815 1 Pseudonocardia sp. HH130630-07 721 1 species 445576 0 724 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. EC080619-01 728 1096856 0 species 1 1 species 1096868 0 621 Pseudonocardia sp. EC080625-04 1641402 0 species 1 Pseudonocardia sp. HH130629-09 598 62 genus 0 1813 7 Amycolatopsis 4475 1 Amycolatopsis methanolica 526 0 1814 species 1 Amycolatopsis orientalis 1195 31958 0 species 1 Amycolatopsis japonica 673 0 208439 species 1 1180 no rank 0 2618356 2 1 species 0 1896961 555 Amycolatopsis sp. AA4 species 0 1911175 1 Amycolatopsis sp. BJA-103 625 Amycolatopsis mediterranei 839 species 33910 0 1 343 1 genus 0 1851 Saccharomonospora viridis 343 species 0 1852 1 867 1 Saccharothrix 2 genus 1 2071 0 species 0 103731 1 Saccharothrix espanaensis 866 1 430 Nakamurellales 4 2 order 1643684 0 Nakamurellaceae 1 428 family 3 0 85031 3 2 0 53460 4 genus 425 1 Nakamurella Nakamurella multipartita 421 53461 0 species 1 3 0 1643683 order 257 Acidothermaceae 257 1 85032 0 family 4 3 1 253 Acidothermus 2 genus 5 28048 0 248 Acidothermus cellulolyticus 1 28049 0 species 1 4553 Bifidobacteriales 27 0 85004 order 12 family 37 0 31953 26 Bifidobacteriaceae 4541 1 genus 45 0 1678 19 Bifidobacterium 3680 1 species 0 1683 1 Bifidobacterium angulatum 159 1680 0 species 1 Bifidobacterium adolescentis 137 0 1684 species 1 Bifidobacterium asteroides 118 0 28026 species 1 Bifidobacterium pseudocatenulatum 114 638619 0 species 1 Bifidobacterium actinocoloniiforme 321 1689 0 species 1 Bifidobacterium dentium 168 1 210 Bifidobacterium catenulatum 2 species 70 1686 0 1 subspecies 0 630129 140 Bifidobacterium kashiwanohense species 0 1687 1 Bifidobacterium coryneforme 93 Bifidobacterium animalis 185 28025 0 species 1 104 Bifidobacterium thermophilum 1 species 0 33905 Bifidobacterium indicum 119 1691 0 species 1 species 35760 0 1 Bifidobacterium choerinum 265 Bifidobacterium pseudolongum 332 1694 0 species 1 1 158787 0 species 226 Bifidobacterium scardovii Bifidobacterium longum 578 0 216816 species 1 1 0 1685 species 337 Bifidobacterium breve Bifidobacterium bifidum 169 1681 0 species 1 0 196082 genus 1 2 Parascardovia 1 109 1 78258 0 species 108 Parascardovia denticolens Gardnerella 1 586 genus 1 0 2701 2 585 Gardnerella vaginalis 1 species 2702 0 1 129 Scardovia 2 196081 0 genus 3 1 species 0 78259 126 Scardovia inopinata 1 77123 Streptomycetales 82 144 order 0 85011 Streptomycetaceae 76979 1 family 205 2062 0 81 0 1883 genus 977 75 Streptomyces 1 71436 Streptomyces xinghaiensis 662 species 1038928 0 1 985 Streptomyces alfalfae 1 0 1642299 species 1 species 1950 0 553 Streptomyces peucetius 766 Streptomyces albireticuli 1 species 1940 0 species 1915 0 1 Streptomyces lincolnensis 968 Streptomyces puniciscabiei 624 0 164348 species 1 species 1916 0 1 Streptomyces lividans 705 Streptomyces sp. S10(2016) 712 1783515 0 species 1 1 0 1355015 species 618 Streptomyces pluripotens 535 Streptomyces pratensis 1 0 1169025 species 1616117 0 species 1 Streptomyces formicae 1110 Streptomyces vietnamensis 1020 0 362257 species 1 Streptomyces collinus 651 species 42684 0 1 1 species 0 68570 4853 Streptomyces albulus 1 0 54571 species 1559 Streptomyces venezuelae 1 species 33903 0 1043 Streptomyces avermitilis 1 29303 0 species 624 Streptomyces cattleya 1 species 379067 0 1307 Streptomyces bingchenggensis 1 285473 0 species 662 Streptomyces rubrolavendulae 0 1901 species 1 Streptomyces clavuligerus 657 Streptomyces xiamenensis 509 species 408015 0 1 3316 2 0 1477431 species group 2608 Streptomyces coelicolor 1 0 1902 species 1 species 42239 0 708 Streptomyces sampsonii 1 species 0 1889 847 Streptomyces ambofaciens 1 0 92644 species 887 Streptomyces malaysiensis 1 species 0 38300 661 Streptomyces pristinaespiralis Streptomyces noursei 817 0 1971 species 1 species group 0 629295 2 1290 633 0 1482596 species subgroup 1 Streptomyces griseus 633 species 0 1911 1 0 1482558 species subgroup 1 657 1 species 0 1908 657 Streptomyces globisporus 667 Streptomyces sp. XZHG99 1 2049881 0 species Streptomyces scabiei 1017 species 1930 0 1 Streptomyces pactum 1820 68249 0 species 1 1 species 0 553510 881 Streptomyces gilvosporeus 1 species 1888 0 1889 Streptomyces albus Streptomyces hygroscopicus 1987 1912 0 species 1 0 1437453 species 1 Streptomyces leeuwenhoekii 614 Streptomyces autolyticus 2394 species 0 75293 1 19657 0 2593676 no rank 24 species 0 1495638 1 Streptomyces sp. M56 1303 1 species 0 1841249 828 Streptomyces sp. RTd22 783 Streptomyces sp. fd1-xmd 1 species 0 1812480 Streptomyces sp. CNQ-509 723 0 444103 species 1 1 species 0 1964449 1194 Streptomyces sp. 3211 1 species 0 1984801 788 Streptomyces sp. CLI2509 573 Streptomyces sp. 4F 1 0 1751294 species 1 species 0 1725411 848 Streptomyces sp. CdTB01 1 species 0 1661694 654 Streptomyces sp. Tue 6075 species 465541 0 1 Streptomyces sp. Mg1 867 species 0 2135430 1 Streptomyces sp. P3 1115 603 Streptomyces sp. CFMR 7 1 1649184 0 species 1 species 0 2059884 894 Streptomyces sp. CMB-StM0423 Streptomyces sp. SirexAA-E 505 862751 0 species 1 735 Streptomyces sp. CCM_MD2014 1 species 1561022 0 1 species 0 234612 674 Streptomyces sp. TN58 0 1837283 species 1 Streptomyces sp. S8 594 Streptomyces sp. Sge12 1006 species 0 1972846 1 607 Streptomyces sp. WAC00288 1 2094021 0 species 905 Streptomyces sp. 769 1 1262452 0 species 1 0 1265601 species 475 Streptomyces sp. PAMC 26508 Streptomyces sp. FR-008 1092 species 206662 0 1 1 1849967 0 species 1189 Streptomyces sp. SAT1 1 0 1961713 species 702 Streptomyces sp. MOE7 858 Streptomyces alboflavus 1 0 67267 species 1 species 0 68192 504 Streptomyces cyaneogriseus 1 species 0 1969 591 Streptomyces chartreusis Streptomyces violaceusniger 770 0 68280 species 1 2041 Streptomyces lydicus 1 species 0 47763 0 146923 species 1 Streptomyces parvulus 625 1 0 1935 species 568 Streptomyces violaceoruber 1 species 0 1926 812 Streptomyces reticuli Streptomyces glaucescens 809 species 0 1907 1 Streptomyces griseochromogenes 732 species 0 68214 1 1 species 1914 0 851 Streptomyces lavendulae 770 Streptomyces niveus 1 species 0 193462 1 68202 0 species 661 Streptomyces fulvissimus Kitasatospora 5338 1 2063 0 24 genus 5 Kitasatospora setae 1393 2066 0 species 1 2348 Kitasatospora albolonga 1 species 0 68173 Kitasatospora aureofaciens 714 1894 0 species 1 859 no rank 0 2633591 1 Kitasatospora sp. MMS16-BH015 859 species 2018025 0 1 1 52018 0 no rank 539 1650658 0 species 1 Actinobacteria bacterium IMCC26256 539 6 order 8 1643682 0 1744 1 Geodermatophilales 1736 1 Geodermatophilaceae 5 0 85030 78 family 2 0 38501 3 genus 544 1 Blastococcus 138336 0 species 1 Blastococcus saxobsidens 541 556 genus 0 88138 1 477641 0 species 1 Modestobacter marinus 556 1 0 1860 genus 558 Geodermatophilus obscurus 558 0 1861 species 1 0 85006 order 186 139 Micrococcales 1 34383 46 77 family 0 85023 1 13141 Microbacteriaceae 4 0 2034 16 genus 1023 1 Curtobacterium 659 0 257496 no rank 2 Curtobacterium sp. MR_MD2014 375 0 1561023 species 1 284 Curtobacterium sp. BH-2-1-1 1 species 1905847 0 species 0 69373 1 Curtobacterium pusillum 348 3 4 genus 0 33886 649 1 Rathayibacter 1 0 145458 species 344 Rathayibacter toxicus species 33888 0 1 Rathayibacter tritici 301 0 447237 1 genus 2 Frondihabitans 1 1351 no rank 0 2626248 1 1350 Frondihabitans sp. PAMC 28766 1350 0 1795630 species 1 743 0 110932 genus 1 1575 0 species 1 Leifsonia xyli 743 Microterricola 361 1 518733 0 3 genus 2 Microterricola viridarii 358 species 412690 0 1 4450 1 Microbacterium 14 50 genus 0 33882 1 300019 0 species 277 Microbacterium paludicola 2794 8 no rank 0 2609290 Microbacterium sp. str. 'China' 254 2103230 0 species 1 306 Microbacterium sp. TPU 3598 1 0 1938334 species Microbacterium sp. CGR1 307 species 1696072 0 1 Microbacterium sp. 1.5R 279 species 0 1916917 1 Microbacterium sp. XT11 271 367477 0 species 1 0 1714373 species 1 Microbacterium sp. No. 7 548 1 0 1795053 species 329 Microbacterium sp. PAMC 28756 500 Microbacterium sp. BH-3-3-3 1 1906742 0 species 2033 0 species 1 Microbacterium testaceum 395 0 162426 species 1 Microbacterium hominis 359 250 Microbacterium chocolatum 1 84292 0 species species 0 36805 1 Microbacterium aurum 325 519 1 Agromyces 2 33877 0 genus 1 species 0 453304 1 Agromyces aureus 518 no rank 0 1655488 3 359 1655489 0 clade 3 359 3 529883 0 16 genus 1 359 Rhodoluna 206 Rhodoluna lacicola 1 529884 0 species species 0 535712 1 Candidatus Rhodoluna planktonica 137 3 genus 8 0 69578 1 632 Cryobacterium 304 0 2649013 no rank 1 304 Cryobacterium sp. LW097 1 0 1978566 species Cryobacterium arcticum 320 species 0 670052 1 147 1 0 1705353 genus 147 Aurantimicrobium minutum 1 708131 0 species 0 1434032 genus 1 131 Pontimonas salivibrio 131 species 1159327 0 1 2 0 1759331 1 genus 438 1 Cnuibacter Cnuibacter physcomitrellae 437 1619308 0 species 1 0 337004 genus 1 262 1 279828 0 species 262 Microcella alkaliphila 1999 1 Clavibacter 6 0 1573 32 genus 5 28447 0 439 species 1967 1 Clavibacter michiganensis 1 0 33014 subspecies 356 Clavibacter insidiosus 1 subspecies 0 1874630 362 Clavibacter capsici 300 Clavibacter nebraskensis 1 subspecies 0 31963 Clavibacter sepedonicus 510 subspecies 0 31964 1 1632 1 Intrasporangiaceae 9 9 family 85021 0 400 1 Intrasporangium 2 8 genus 53357 0 1 0 53358 species 392 Intrasporangium calvum 393 1 Arsenicicoccus 2 1 genus 267408 0 no rank 0 2663846 1 392 1 species 0 1658671 392 Arsenicicoccus sp. oral taxon 190 Serinicoccus 1 422 0 265976 genus 1 2 Serinicoccus sp. JLT9 421 species 0 1758689 1 2 11 genus 53457 0 1 408 Janibacter species 0 857417 1 Janibacter indicus 397 152 no rank 0 577468 1 152 1 genus 0 2038 Tropheryma whipplei 152 species 0 2039 1 0 85017 17 family 9 Promicromonosporaceae 1 2721 0 157920 genus 4 3 Cellulosimicrobium 1148 1 species 1710 0 1 Cellulosimicrobium cellulans 526 618 1 no rank 0 2624466 1 species 1980001 0 618 Cellulosimicrobium sp. TH-20 genus 1 0 186188 2 Xylanimonas 512 1 Xylanimonas cellulosilytica 511 species 0 186189 1 3 genus 6 254250 0 1 1044 Isoptericola 372663 0 species 1 Isoptericola dokdonensis 591 447 Isoptericola variabilis 1 species 0 139208 252 1 0 85018 family 0 1862 genus 1 252 Dermatophilus congolensis 252 species 1863 0 1 2 family 85022 0 138 Jonesia 138 1 43673 0 genus 2 2 136 Jonesia denitrificans 1 species 0 43674 Cellulomonadaceae 1775 1 85016 0 family 5 6 5 0 1707 14 genus 1 1770 Cellulomonas Cellulomonas gilvus 377 11 0 species 1 418 0 2620175 no rank 1 Cellulomonas sp. PSBB021 418 species 2003551 0 1 471 Cellulomonas flavigena 1 1711 0 species 490 Cellulomonas fimi 1 1708 0 species 1 3386 Dermabacteraceae 11 85020 0 family 12 2 0 36739 genus 1 131 1 Dermabacter 130 Dermabacter vaginalis 1 0 1630135 species 1 250 Devriesea 2 0 472568 genus 30 220 Devriesea agamarum 1 0 472569 species Brachybacterium 1 2993 0 43668 17 genus 6 0 2017485 species 1 Brachybacterium sp. VR2415 391 388 Brachybacterium ginsengisoli 1 0 1331682 species 0 43669 species 1 Brachybacterium faecium 420 1 0 2017484 species 1370 Brachybacterium sp. VM2412 2623841 0 no rank 1 407 1 0 1903186 species 407 Brachybacterium sp. P6-10-X1 1 507 Brevibacteriaceae 3 0 85019 family 12 495 1 Brevibacterium 2 genus 1 0 1696 Brevibacterium linens 494 1703 0 species 1 Sanguibacteraceae 1 518 4 family 0 145360 3 genus 4 60919 0 2 Sanguibacter 514 1 1 species 0 60920 510 Sanguibacter keddieii 8407 1 Micrococcaceae 37 53 family 0 1268 1 genus 0 2078575 196 1 species 1618207 0 196 Arthrobacter sp. IHBB 11108 0 1742992 genus 1 274 274 Paenarthrobacter aurescens 1 0 43663 species Neomicrococcus 207 1 2 genus 1868332 0 2 556325 0 species 1 Neomicrococcus aestuarii 205 266 0 1269 genus 1 Micrococcus luteus 266 species 1270 0 1 2 genus 1645 0 2 Renibacterium 130 1 1 1646 0 species 128 Renibacterium salmoninarum 1 genus 0 1742989 306 306 Glutamicibacter arilaitensis 1 0 256701 species 1742993 0 16 genus 4 Pseudarthrobacter 1 797 361575 0 species 1 Pseudarthrobacter phenanthrenivorans 300 Pseudarthrobacter chlorophenolicus 248 species 0 85085 1 Pseudarthrobacter sulfonivorans 233 0 121292 species 1 0 57493 7 genus 4 Kocuria 1 812 Kocuria flava 353 species 0 446860 1 Kocuria palustris 274 species 0 71999 1 72000 0 species 1 Kocuria rhizophila 178 Arthrobacter 1 4657 genus 88 1663 0 15 Arthrobacter crystallopoietes 293 37928 0 species 1 497 Arthrobacter alpinus 1 species 0 656366 3779 12 no rank 0 235627 1 0 1652545 species 222 Arthrobacter sp. YC-RL1 334 Arthrobacter sp. U41 1 0 1849032 species 1 1806905 0 species 238 Arthrobacter sp. ZXY-2 Arthrobacter sp. LS16 249 species 1690248 0 1 Arthrobacter sp. ERGS1:01 419 0 1704044 species 1 1771959 0 species 1 Arthrobacter sp. ATCC 21022 200 Arthrobacter sp. FB24 250 species 0 290399 1 Arthrobacter sp. YN 224 0 2020486 species 1 Arthrobacter sp. Rue61a 176 1118963 0 species 1 1 0 2079227 species 849 Arthrobacter sp. PGP41 species 0 1357915 1 Arthrobacter sp. QXT-31 272 1 1494608 0 species 346 Arthrobacter sp. PAMC 25486 1 282 Rothia 3 genus 4 32207 0 Rothia dentocariosa 97 0 2047 species 1 0 43675 species 1 Rothia mucilaginosa 181 4 genus 596707 0 2 Sinomonas 1 427 423 Sinomonas atrocyanea 1 species 0 37927 1018 1 Dermacoccaceae 7 145357 0 5 family Dermacoccus 365 1 0 57495 genus 4 2 species 0 1274 1 Dermacoccus nishinomiyaensis 361 2 1 genus 745364 0 415 1 Luteipulveratus 414 Luteipulveratus mongoliensis 1 species 571913 0 1 233 Kytococcus 2 4 genus 0 57499 229 Kytococcus sedentarius 1 1276 0 species family 3 0 125316 3 Beutenbergiaceae 1 550 Beutenbergia 547 1 84756 0 genus 8 2 Beutenbergia cavernae 539 0 84757 species 1 20 85008 0 order 15 1 8485 Micromonosporales 28056 0 119 family 19 Micromonosporaceae 8470 1 Micromonospora 1808 1 11 genus 1873 0 4 624 1 no rank 0 2617518 Micromonospora sp. L5 624 species 0 648999 1 Micromonospora aurantiaca 687 47850 0 species 1 1 species 1003110 0 486 Verrucosispora maris 4 25 genus 673534 0 1 2047 Plantactinospora 0 2631981 no rank 3 2022 0 2071627 species 1 Plantactinospora sp. BB1 740 species 0 2108470 1 Plantactinospora sp. BC1 664 618 Plantactinospora sp. KBS50 1 2024580 0 species 1 genus 84593 0 5 Verrucosispora Salinispora 780 1 168694 0 12 genus 3 1 168695 0 species 385 Salinispora tropica 1 species 168697 0 383 Salinispora arenicola 3711 1 Actinoplanes 6 genus 30 1865 0 623 Actinoplanes friuliensis 1 0 196914 species 3 0 2626549 no rank 2310 Actinoplanes sp. N902-109 720 649831 0 species 1 Actinoplanes sp. SE50 795 0 2033844 species 1 1 0 134676 species 795 Actinoplanes sp. SE50/110 species 0 1866 1 Actinoplanes missouriensis 748 609 1 Kineosporiales 4 order 4 0 622452 0 83778 8 family 3 Kineosporiaceae 605 1 2 genus 1 33981 0 597 1 Kineococcus Kineococcus radiotolerans 596 species 0 131568 1 16 85012 0 56 order 4604 1 Streptosporangiales family 23 0 83676 7 Nocardiopsaceae 1850 1 2 0 83677 genus 1 183 1 Thermobifida 1 0 2021 species 182 Thermobifida fusca 1644 1 Nocardiopsis 4 genus 16 2013 0 species 0 53437 1 Nocardiopsis alba 404 1 species 280236 0 511 Nocardiopsis gilva 1 species 0 2014 713 Nocardiopsis dassonvillei 3 2 family 0 2012 428 1 Thermomonosporaceae 2 1 genus 2019 0 426 1 Thermomonospora 425 Thermomonospora curvata 1 0 2020 species 14 family 2004 0 5 Streptosporangiaceae 1 2270 2 2000 0 1 genus 1 1022 Streptosporangium 1 0 2001 species 1021 Streptosporangium roseum 2 5 genus 0 83681 1 1234 Nonomuraea 1 no rank 0 2593643 1229 1229 Nonomuraea sp. ATCC 55076 1 species 0 1909395 Propionibacteriales 7342 1 85009 0 order 48 33 Propionibacteriaceae 1 3594 0 31957 34 family 19 3 genus 7 0 1743 1 512 Propionibacterium 1 2608905 0 no rank 104 104 Propionibacterium sp. oral taxon 193 1 671223 0 species 1 0 1744 species 401 Propionibacterium freudenreichii 103 1 0 203133 genus 103 0 2633994 no rank 1 103 Propionimicrobium sp. Marseille-P3275 1 species 1871034 0 1 genus 0 2801844 249 1 1750 0 species 249 Pseudopropionibacterium propionicum Acidipropionibacterium 410 1 1912215 0 genus 1 2 species 1748 0 1 Acidipropionibacterium acidipropionici 409 0 72763 18 genus 5 Tessaracoccus 1 1234 Tessaracoccus aquimaris 369 1332264 0 species 1 283 0 2635419 no rank 1 Tessaracoccus sp. T2.5-30 283 0 1909732 species 1 species 0 1610493 1 Tessaracoccus flavus 256 Tessaracoccus flavescens 308 species 399497 0 1 1 361 Microlunatus 2 genus 2 0 29404 Microlunatus phosphovorus 359 species 29405 0 1 10 genus 1912216 0 4 Cutibacterium 691 1 212 Cutibacterium avidum 1 species 33010 0 1 species 0 33011 198 Cutibacterium granulosum 1 0 1747 species 271 Cutibacterium acnes 1 3700 Nocardioidaceae 13 family 41 0 85015 2 genus 2 2044 0 698 1 Pimelobacter 696 Pimelobacter simplex 1 species 0 2045 1 479 Aeromicrobium 2 genus 6 2040 0 473 Aeromicrobium erythreum 1 2041 0 species 1 612 Kribbella 2 182639 0 29 genus species 0 182640 1 Kribbella flavida 583 1839 0 32 genus 4 Nocardioides 1 1558 605 Nocardioides dokdonensis 1 species 450734 0 526 0 2615069 no rank 1 526 Nocardioides sp. JS614 1 0 196162 species Nocardioides sp. 78 395 2045452 0 species 1 312 1 Micropruina 2 0 116071 4 genus Micropruina glycogenica 308 75385 0 species 1 Coriobacteriia 3928 1 0 84998 17 class 30 14 84999 0 18 order 1426 1 Coriobacteriales 2 family 0 1643824 7 Atopobiaceae 1 938 236 genus 0 2767353 1 Atopobium parvulum 236 1382 0 species 1 Atopobium 3 genus 0 1380 1 4 11 genus 133925 0 1 697 Olsenella 1 no rank 2638792 0 279 Olsenella sp. oral taxon 807 279 species 0 712411 1 1805478 0 species 1 Olsenella sp. Marseille-P2300 261 1 species 133926 0 146 Olsenella uli 470 1 Coriobacteriaceae 6 3 family 84107 0 1 0 84113 no rank 196 196 Coriobacteriaceae bacterium 68-1-3 1 0 1531429 species 102106 0 genus 10 2 Collinsella 1 151 Collinsella aerofaciens 141 74426 0 species 1 2 8 genus 0 33870 120 1 Coriobacterium 112 Coriobacterium glomerans 1 species 0 33871 2485 1 Eggerthellales 15 order 18 0 1643822 57 family 0 1643826 14 Eggerthellaceae 2467 1 0 1981050 genus 1 379 379 Phoenicibacter massiliensis 1 species 0 1944646 172 genus 84108 0 1 172 Slackia heliotrinireducens 1 84110 0 species 2 79603 0 genus 1 185 1 Denitrobacterium 1 79604 0 species 184 Denitrobacterium detoxificans 3 2 genus 84111 0 534 1 Eggerthella 153 no rank 0 2648737 1 1 0 502558 species 153 Eggerthella sp. YY7918 Eggerthella lenta 379 species 0 84112 1 3 0 644652 genus 23 734 1 Gordonibacter Gordonibacter massiliensis 356 1841863 0 species 1 355 Gordonibacter urolithinfaciens 1 1335613 0 species 2 1 genus 0 447020 1 250 Adlercreutzia 249 Adlercreutzia equolifaciens 1 species 0 446660 1 0 84162 genus 156 species 84163 0 1 Cryptobacterium curtum 156 class 0 84995 5 593 1 593 Rubrobacterales 5 0 84996 order 9 4 84997 0 12 family 1 584 Rubrobacteraceae 3 1 genus 42255 0 572 1 Rubrobacter 1 species 42256 0 270 Rubrobacter radiotolerans 1 species 49319 0 301 Rubrobacter xylanophilus Acidimicrobiia 1576 1 class 4 84992 0 7 84993 0 order 29 6 Acidimicrobiales 1 1572 family 0 2448023 2 1133 682522 0 29 genus 2 Ilumatobacter 1 1133 Ilumatobacter coccineus 1104 467094 0 species 1 family 6 84994 0 3 Acidimicrobiaceae 1 410 2 21 genus 0 53634 1 404 Acidimicrobium 383 Acidimicrobium ferrooxidans 1 species 0 53635 1184 4 0 1752188 no rank 1848755 0 species 1 Actinobacteria bacterium IMCC26077 221 species 0 1848756 1 Actinobacteria bacterium IMCC26103 371 1 1848255 0 species 173 Actinobacteria bacterium IMCC25003 1 species 1848754 0 419 Actinobacteria bacterium IMCC19121 2446 class 0 1497346 3 order 20 588673 0 3 Solirubrobacterales 2446 1 2426 2 0 320583 family 0 191494 4 genus 2 Conexibacter 1 2426 Conexibacter woesei 2422 species 191495 0 1 0 1798711 clade 158 6133092 1 6133092 Cyanobacteria 158 1117 0 phylum 35 Pleurocapsales 4913 1 14 order 0 52604 8 4223 1 Dermocarpellaceae 4 1890498 0 20 family Stanieria 4203 1 genus 32 102115 0 3 Stanieria cyanosphaera 1927 102116 0 species 1 no rank 0 2642663 1 2244 Stanieria sp. NIES-3757 2244 species 0 1807358 1 Hyellaceae 1 676 0 1890500 family 22 3 654 1 Pleurocapsa 2 6 genus 0 44474 species 54308 0 1 Pleurocapsa minor 648 31117 1 Nostocales 34 0 1161 95 order 8735 family 0 2661849 8 Calothrix 1 8735 0 1186 genus 47 8 species 0 32054 1 Calothrix parietina 1284 7404 2619626 0 no rank 6 1306 Calothrix sp. NIES-2098 1 species 0 1954171 1 species 2005461 0 1403 Calothrix sp. NIES-4101 1 species 99598 0 1028 Calothrix sp. PCC 7507 0 2005462 species 1 Calothrix sp. NIES-3974 1006 1 species 0 1337936 991 Calothrix sp. 336/3 Calothrix sp. NIES-4071 1670 0 2005469 species 1 Rivulariaceae 1 2345 0 1185 family 51 3 genus 9 0 373984 2 Rivularia 1 2294 2285 0 2676603 no rank 1 373994 0 species 1 Rivularia sp. PCC 7116 2285 18 0 1162 49 family 1 16818 Nostocaceae 10 1177 0 genus 73 10415 1 Nostoc 8012 7 0 2593658 no rank 1176 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 species 1261031 0 Nostoc sp. CENA543 1056 1869241 0 species 1 0 1618022 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 989 1 28072 0 species 1381 Nostoc sp. PCC 7524 0 1751286 species 1 Nostoc sp. NIES-3756 1193 1 species 317936 0 1218 Nostoc sp. PCC 7107 999 Nostoc sp. PCC 7120 1 species 103690 0 1 species 0 1306274 1290 Nostoc flagelliforme 272131 0 species 1 Nostoc punctiforme 1040 3 264688 0 2 genus 1 2172 Trichormus Trichormus variabilis 1000 264691 0 species 1 1164 0 species 1 Trichormus azollae 1170 4182 1 Anabaena 4 1163 0 33 genus 2686 2 no rank 0 2619674 0 46234 species 1 Anabaena sp. 90 1254 species 0 1647413 1 Anabaena sp. WA102 1432 1463 Anabaena cylindrica 1 0 1165 species 1 2065 Hapalosiphonaceae 3 9 family 0 1892263 2 genus 2 1190 0 1 2056 Fischerella 2054 1 494603 0 no rank Fischerella sp. NIES-3754 2054 1752063 0 species 1 no rank 0 1219117 1 1059 1059 Nostocales cyanobacterium HT-58-2 1 species 1940762 0 6055308 1 Synechococcales 58 169 order 0 1890424 family 10 1890438 0 6 Leptolyngbyaceae 1 2082 5 0 47251 15 genus 1 2072 Leptolyngbya 1572 no rank 0 2650499 3 395 Leptolyngbya sp. NIES-3755 1 species 0 1752064 Leptolyngbya sp. O-77 324 0 1080068 species 1 853 Leptolyngbya sp. PCC 7376 1 111781 0 species 0 1184 species 1 Leptolyngbya boryana 485 3 1890429 0 2 family 1 971 Acaryochloridaceae 155977 0 genus 12 2 Acaryochloris 1 969 1 155978 0 species 957 Acaryochloris marina 1 1356 Merismopediaceae 5 0 1890428 6 family 4 0 1142 genus 29 1 1350 Synechocystis 3 no rank 0 2640012 1321 1 0 1148 species 325 Synechocystis sp. PCC 6803 1 1147 0 species 671 Synechocystis sp. PCC 6714 Synechocystis sp. IPPAS B-1465 325 species 0 2116702 1 47529 1 Synechococcaceae 33 family 33 1890426 0 0 146785 genus 1 248 Thermosynechococcus elongatus 248 0 146786 species 1 0 1129 genus 599 26 Synechococcus 44390 1 1 species 0 33070 179 Synechococcus lividus 43386 2626047 0 no rank 23 Synechococcus sp. NIES-970 226 species 1827144 0 1 323 Synechococcus sp. PCC 6312 1 0 195253 species 1 321327 0 species 185 Synechococcus sp. JA-3-3Ab 0 1173263 species 1 Synechococcus sp. PCC 7502 808 1 species 0 166314 8350 Synechococcus sp. WH 8109 1 species 374981 0 275 Synechococcus sp. PCC 7003 664 Synechococcus sp. SynAce01 1 species 0 1916956 Synechococcus sp. PCC 73109 240 species 374982 0 1 1 585425 0 species 3621 Synechococcus sp. KORDI-52 1 0 110662 species 14919 Synechococcus sp. CC9605 Synechococcus sp. CC9311 660 species 64471 0 1 species 0 32051 1 Synechococcus sp. WH 7803 626 1 195498 0 species 248 Synechococcus sp. PCC 7117 1 species 1350461 0 225 Synechococcus sp. UTEX 2973 1 1280380 0 species 7117 Synechococcus sp. KORDI-100 693 Synechococcus sp. RCC307 1 species 316278 0 Synechococcus sp. JA-2-3B'a(2-13) 258 species 0 321332 1 species 0 195248 1 Synechococcus sp. PCC 8807 181 1284 Synechococcus sp. WH 8102 1 84588 0 species species 585423 0 1 Synechococcus sp. KORDI-49 585 Synechococcus sp. WH 8103 1235 species 29410 0 1 Synechococcus sp. PCC 7002 233 species 32049 0 1 430 Synechococcus sp. CC9902 1 species 316279 0 Synechococcus elongatus 226 species 32046 0 1 2 0 13034 3 genus 839 1 Dactylococcopsis 1 292566 0 species 836 Dactylococcopsis salina 0 167375 genus 83 3 Cyanobium 2019 1 902 no rank 0 2627006 1 1 species 0 1851505 902 Cyanobium sp. NIES-981 1 0 59930 species 1034 Cyanobium gracile 646 family 0 2303730 2 646 1 Halomicronema 2 0 170610 1 genus 1 species 1209493 0 645 Halomicronema hongdechloris 6001581 1 Prochloraceae 5 24 family 1213 0 Prochlorococcus 1 6001557 244 genus 0 1218 4 0 1219 species 1 Prochlorococcus marinus 4538492 no rank 2627481 0 2 1462821 species 1501268 0 1 Prochlorococcus sp. MIT 0604 1455111 species 1501269 0 1 Prochlorococcus sp. MIT 0801 7710 1 974 Pseudanabaenaceae 3 2 family 0 1890436 Pseudanabaena 1 972 genus 6 0 1152 2 966 1 0 2593292 no rank 1 species 82654 0 966 Pseudanabaena sp. PCC 7367 class 4 307596 0 6 Gloeobacteria 1 660 1 656 Gloeobacterales 5 6 order 0 307595 4 0 1890422 family 14 650 1 Gloeobacteraceae 1 636 Gloeobacter 3 genus 6 33071 0 285 Gloeobacter kilaueensis 1 1416614 0 species 1 0 33072 species 345 Gloeobacter violaceus 826 no rank 1983111 0 1 826 cyanobacterium endosymbiont of Epithemia turgida 1 species 718217 0 46 0 1301283 subclass 38587 0 1150 68 order 21 Oscillatoriales 1 10899 Oscillatoriaceae 1 4769 61 family 1892254 0 6 3 16 genus 0 1158 1 2634 Oscillatoria 1393 Oscillatoria acuminata 1 species 0 118323 1 482564 0 species 1225 Oscillatoria nigro-viridis 1 2074 Moorea 2 0 1155738 genus 11 1 species 1155739 0 2063 Moorea producens 6 family 1892255 0 3 Gomontiellaceae 1 1121 4 genus 241421 0 2 Crinalium 1 1115 1111 Crinalium epipsammum 1 0 241425 species 5 21 family 0 1892252 4244 1 Microcoleaceae 2 genus 4 1205 0 1 3665 Trichodesmium species 1206 0 1 Trichodesmium erythraeum 3661 Microcoleus 1 558 44471 0 genus 4 2 554 2642155 0 no rank 1 species 0 1173027 1 Microcoleus sp. PCC 7113 554 47 family 1892249 0 3 Cyanothecaceae 376 1 2 genus 38 0 43988 329 1 Cyanothece 1 no rank 0 2649277 291 1 species 0 395961 291 Cyanothece sp. PCC 7425 1 321 Coleofasciculaceae 3 family 18 1892251 0 genus 3 63132 0 2 Geitlerinema 1 303 300 0 2648775 no rank 1 1 1173025 0 species 300 Geitlerinema sp. PCC 7407 27688 1 Chroococcales 25 0 1118 order 37 Chroococcaceae 7940 1 46 family 1890464 0 7 1 862 Gloeocapsa 2 0 102231 1 genus 861 no rank 0 2623012 1 861 Gloeocapsa sp. PCC 7428 1 species 0 1173026 Geminocystis 3575 1 27 genus 669357 0 3 no rank 2625037 0 2 3548 1 species 0 1617448 1585 Geminocystis sp. NIES-3709 Geminocystis sp. NIES-3708 1963 1615909 0 species 1 3457 1 genus 0 268175 3457 no rank 0 2648896 1 3457 Chondrocystis sp. NIES-4102 1 species 2005460 0 family 8 0 1890452 3 Cyanobacteriaceae 1561 1 102234 0 genus 3 2 Cyanobacterium 1 1553 1 species 379064 0 1550 Cyanobacterium aponinum 0 1890450 16 family 10 Aphanothecaceae 14567 1 Candidatus Atelocyanobacterium 1 1496 10 genus 0 1453359 2 1486 Candidatus Atelocyanobacterium thalassa 1 species 713887 0 genus 28070 0 2 3155 1528 species 0 2546356 1 Cyanothece sp. PCC 7424 1528 strain 0 65393 1 1 species 2546359 0 1627 1627 Cyanothece sp. PCC 7822 1 strain 0 497965 1 genus 263510 0 6304 1 0 2546360 species 6304 6304 Cyanothece sp. ATCC 51142 1 strain 0 43989 2849 2 genus 0 2546365 2 species 0 2546366 2849 395962 0 strain 1 Cyanothece sp. PCC 8802 1438 1411 Cyanothece sp. PCC 8801 1 strain 41431 0 0 92682 no rank 2 747 0 76023 8 genus 2 Halothece 747 1 739 no rank 0 2632878 1 1 species 65093 0 739 Halothece sp. PCC 7418 3583 1 Microcystaceae 4 1890449 0 family 15 1 3568 Microcystis 3 1125 0 genus 14 1 no rank 2643300 0 962 species 1967666 0 1 Microcystis sp. MC19 962 2592 Microcystis aeruginosa 1 0 1126 species 1646 1 Chroococcidiopsidales 4 0 1890505 7 order 3 0 1890528 family 28 1639 1 Chroococcidiopsidaceae genus 2 0 54298 2 Chroococcidiopsis 1611 1 1 0 54299 species 1609 Chroococcidiopsis thermalis phylum 0 200795 41 4644 Chloroflexia 1540 1 class 2 0 32061 11 32064 0 order 15 10 Chloroflexales 1538 1 0 1508595 suborder 4 581 Roseiflexaceae 1 581 3 family 0 1508635 4 Roseiflexus 578 1 0 120961 3 genus 3 1 no rank 0 2609473 297 Roseiflexus sp. RS-1 297 357808 0 species 1 278 Roseiflexus castenholzii 1 120962 0 species suborder 1508594 0 5 942 Chloroflexaceae 1 942 0 1106 4 family 5 4 11 genus 1107 0 1 938 Chloroflexus Chloroflexus aggregans 397 species 152260 0 1 Chloroflexus aurantiacus 1 530 1108 0 species 266 2 264 Chloroflexus sp. Y-400-fl 1 strain 480224 0 class 0 475962 4 393 4 0 475963 6 order 393 1 Caldilineales 3 475964 0 2 family 387 1 Caldilineaceae Caldilinea 385 1 genus 2 0 233191 2 1 0 133453 species 383 Caldilinea aerophila 8 189775 0 class 3 540 1 Thermomicrobia 0 85000 subclass 4 418 0 85001 order 4 4 Sphaerobacterales 1 418 3 0 255728 suborder 414 414 1 Sphaerobacteraceae 3 85002 0 family 7 407 1 Sphaerobacter 2 2056 0 1 genus 406 Sphaerobacter thermophilus 1 2057 0 species 3 189776 0 2 order 119 1 Thermomicrobiales family 1 189777 0 2 Thermomicrobiaceae 117 1 116 0 499 genus 1 116 Thermomicrobium roseum 1 500 0 species 650 1 Ardenticatenia 4 6 class 0 1382928 644 1 Ardenticatenales 3 0 1382929 order 14 2 family 2 0 1382930 630 1 Ardenticatenaceae 628 1 1988031 0 genus 1 species 1806508 0 628 Candidatus Promineofilum breve 7 1 class 301297 0 1 884 Dehalococcoidia 3 genus 15 670486 0 1 316 Dehalogenimonas species 1839801 0 1 Dehalogenimonas formicexedens 164 0 552810 species 1 Dehalogenimonas lykanthroporepellens 137 567 0 1202465 order 3 3 0 1202464 family 567 genus 5 61434 0 3 Dehalococcoides 567 1 120 0 237581 no rank 1 120 Dehalococcoides sp. UCH007 1 1522671 0 species Dehalococcoides mccartyi 442 species 0 61435 1 0 292625 2 class 7 Anaerolineae 1 637 Anaerolineales 1 635 292629 0 order 3 6 0 292628 family 4 5 Anaerolineaceae 632 1 2 2019482 0 4 genus 254 1 Brevefilum 250 Brevefilum fermentans 1 species 0 1986204 genus 233189 0 1 222 Anaerolinea thermophila 222 0 167964 species 1 no rank 1324991 0 1 152 1 0 1889813 species 152 Anaerolineaceae bacterium oral taxon 439 Tenericutes 51299 1 544448 0 6 phylum 102 0 31969 class 123 97 Mollicutes 49008 1 1 21321 Entomoplasmatales 39 186328 0 45 order 14 33925 0 22 family 6431 1 Entomoplasmataceae 0 46239 99 genus 8 Mesoplasma 1 4492 1 species 219745 0 568 Mesoplasma tabanidae 138853 0 species 1 Mesoplasma lactucae 417 1 0 2151 species 1127 Mesoplasma florum 2149 0 species 1 Mesoplasma entomophilum 577 Mesoplasma coleopterae 619 species 0 324078 1 1 species 0 216427 599 Mesoplasma chauliocola species 225999 0 1 Mesoplasma syrphidae 486 5 genus 15 46238 0 1917 1 Entomoplasma Entomoplasma somnilux 613 215578 0 species 1 74700 0 species 1 Entomoplasma freundtii 243 species 0 81459 1 Entomoplasma melaleucae 621 214888 0 species 1 Entomoplasma luminosum 425 24 2131 0 family 28 1 14845 Spiroplasmataceae 23 2132 0 195 genus 14817 1 Spiroplasma 631 Spiroplasma clarkii 1 species 0 2139 Spiroplasma corruscae 801 species 216934 0 1 Spiroplasma kunkelii 657 species 0 47834 1 0 2145 species 1 Spiroplasma taiwanense 923 994 no rank 0 2637901 2 Spiroplasma sp. TU-14 497 species 0 1898044 1 Spiroplasma sp. NBRC 100390 497 species 0 1914410 1 216936 0 species 1 Spiroplasma diminutum 869 Spiroplasma monobiae 638 species 2136 0 1 Spiroplasma litorale 973 0 216942 species 1 species 315358 0 1 Spiroplasma eriocheiris 465 Spiroplasma syrphidicola 484 species 0 216945 1 835 Spiroplasma turonicum 1 species 216946 0 596 Spiroplasma citri 1 species 0 2133 2137 0 species 1 Spiroplasma apis 496 516 Spiroplasma chrysopicola 1 0 216933 species 1 species 216935 0 817 Spiroplasma culicicola Spiroplasma sabaudiense 527 216944 0 species 1 Spiroplasma atrichopogonis 376 0 1114980 species 1 778 Spiroplasma helicoides 1 216938 0 species 1 216937 0 species 932 Spiroplasma floricola 939 Spiroplasma cantharicola 1 362837 0 species 375 Spiroplasma mirum 1 0 2144 species 13 14 order 186329 0 4982 1 Acholeplasmatales Acholeplasmataceae 1 4968 2146 0 19 family 12 1 2724 Acholeplasma 5 genus 13 2147 0 Acholeplasma laidlawii 606 species 0 2148 1 0 38986 species 1 Acholeplasma palmae 972 Acholeplasma oculi 631 species 0 35623 1 502 Acholeplasma brassicae 1 species 61635 0 Candidatus Phytoplasma 2225 1 25 genus 0 33926 6 1261 3 species group 0 85620 0 202462 species 1 Maize bushy stunt phytoplasma 409 100379 0 species 1 Onion yellows phytoplasma 453 0 229545 species 1 Aster yellows witches'-broom phytoplasma 399 0 85632 species group 1 469 0 59748 species 1 Candidatus Phytoplasma australiense 469 470 species group 0 85630 1 Candidatus Phytoplasma mali 470 0 37692 species 1 Mycoplasmatales 1 22582 0 2085 order 83 44 Mycoplasmataceae 22499 1 0 2092 46 family 43 6436 0 2767358 genus 12 Mycoplasma pullorum 393 species 48003 0 1 389 Mycoplasma bovigenitalium 1 species 0 2112 0 29555 species 1 Mycoplasma canis 636 1 171284 0 species 667 Mycoplasma cynos Mycoplasma fermentans 574 2115 0 species 1 Mycoplasma pulmonis 539 2107 0 species 1 2113 0 species 1 Mycoplasma californicum 283 species 2110 0 1 Mycoplasma agalactiae 606 384 Mycoplasma bovirhinis 1 29553 0 species 0 28903 species 1 Mycoplasma bovis 1012 0 2094 species 1 Mycoplasma arginini 574 0 2109 species 1 Mycoplasma synoviae 379 Ureaplasma 1022 1 0 2129 genus 3 3 575 Ureaplasma parvum 1 species 0 134821 444 Ureaplasma urealyticum 1 2130 0 species Mycoplasma 14995 1 genus 207 0 2093 27 329 Mycoplasma flocculare 1 2128 0 species 772 Mycoplasma penetrans 1 28227 0 species species 0 65123 1 Mycoplasma wenyonii 148 0 2100 species 1 Mycoplasma hyorhinis 576 799 Mycoplasma yeatsii 1 species 0 51365 species 0 29554 1 Mycoplasma canadense 548 1 species 0 984991 330 Mycoplasma parvum Mycoplasma hyopneumoniae 798 species 0 2099 1 1 species 0 86660 399 Mycoplasma dispar 285 Mycoplasma suis 1 0 57372 species 164 Mycoplasma ovis 1 0 171632 species no rank 2683645 0 1 465 465 Mycoplasma sp. (ex Biomphalaria glabrata) 1 species 1749074 0 species 0 45362 1 Mycoplasma bovoculi 523 species 136241 0 1 Mycoplasma haemocanis 411 Mycoplasma haemofelis 786 0 29501 species 1 1 0 2104 species 79 Mycoplasma pneumoniae 1 species 2097 0 263 Mycoplasma genitalium Mycoplasma mobile 781 species 2118 0 1 564 Mycoplasma crocodyli 1 0 50052 species Mycoplasma gallisepticum 445 species 2096 0 1 Mycoplasma putrefaciens 684 2123 0 species 1 1 species 2098 0 807 Mycoplasma hominis 273 Mycoplasma arthritidis 1 species 2111 0 species group 0 656088 3 3559 1 species 2105 0 914 Mycoplasma leachii 1 species 0 2102 1649 Mycoplasma mycoides 1 0 2095 species 996 Mycoplasma capricolum no rank 0 2799557 2 762 Candidatus Izimaplasma 762 1 genus 2 1912503 0 2 1 no rank 2624196 0 760 760 Candidatus Izimaplasma sp. HR1 1 species 1541959 0 1523 2 no rank 0 713063 761 Tenericutes bacterium MZ-XQ 1 0 1911683 species 1 species 1911684 0 762 Tenericutes bacterium MO-XQ phylum 133 1239 0 689 Firmicutes 381675 1 Clostridia 1 143103 class 156 186801 0 203 727 3 0 2770089 order 0 2770092 family 2 557 1 genus 0 499228 2 Tepidanaerobacter 1 557 1 species 499229 0 556 Tepidanaerobacter acetatoxydans 1 2770093 0 family 170 genus 0 291988 1 170 170 Thermosediminibacter oceani 1 0 291990 species 1 17493 Thermoanaerobacterales 33 14 order 68295 0 13 15 family 543371 0 1 7739 Thermoanaerobacterales Family III. Incertae Sedis 5713 1 Caldicellulosiruptor 9 108 genus 0 44000 Caldicellulosiruptor obsidiansis 686 717609 0 species 1 Caldicellulosiruptor kristjanssonii 627 0 52765 species 1 Caldicellulosiruptor saccharolyticus 786 species 0 44001 1 Caldicellulosiruptor owensensis 601 0 55205 species 1 1 species 413888 0 651 Caldicellulosiruptor hydrothermalis 1 species 0 52766 611 Caldicellulosiruptor lactoaceticus 828 Caldicellulosiruptor kronotskyensis 1 413889 0 species 31899 0 species 1 Caldicellulosiruptor bescii 815 2011 1 Thermoanaerobacterium 3 4 genus 0 28895 716 Thermoanaerobacterium xylanolyticum 1 0 29329 species 1 0 1517 species 1291 Thermoanaerobacterium thermosaccharolyticum 185 1 543372 0 family genus 0 252965 1 185 species 252966 0 1 Mahella australiensis 185 17 0 186814 27 family 8605 1 Thermoanaerobacteraceae 0 140458 genus 1 170 170 Thermacetogenium phaeum 1 85874 0 species Carboxydothermus 1 395 genus 3 129957 0 2 Carboxydothermus hydrogenoformans 392 129958 0 species 1 genus 1 0 249529 2 Caldanaerobacter 1 665 1 species 911092 0 664 Caldanaerobacter subterraneus 284 2 no rank 0 42857 102 0 42837 genus 1 102 Ammonifex degensii 1 42838 0 species 182 44260 0 genus 1 1 0 1525 species 182 Moorella thermoacetica 9 genus 314 1754 0 1 7064 Thermoanaerobacter Thermoanaerobacter wiegelii 926 46354 0 species 1 Thermoanaerobacter italicus 762 108150 0 species 1 0 2325 species 1 Thermoanaerobacter kivui 822 789 Thermoanaerobacter brockii 1 species 0 29323 1 0 496866 species 789 Thermoanaerobacter pseudethanolicus no rank 0 2636821 2 1942 species 399726 0 1 Thermoanaerobacter sp. X514 909 Thermoanaerobacter sp. X513 1033 0 573062 species 1 720 Thermoanaerobacter mathranii 1 species 583357 0 950 227387 0 family 1 950 0 227388 genus 1 species 0 184064 1 Thermodesulfobium narugense 950 Natranaerobiales 1 755 0 485256 7 order 4 748 1 Natranaerobiaceae 3 485255 0 family 1 Natranaerobius 747 1 7 genus 0 375928 2 740 Natranaerobius thermophilus 1 0 375929 species 1 118020 Clostridiales 150 352 order 186802 0 1 478 Syntrophomonadaceae 5 family 5 0 68298 Syntrophothermus 1 167 genus 2 0 129001 2 species 86170 0 1 Syntrophothermus lipocalidus 165 2 0 862 2 genus 1 306 Syntrophomonas Syntrophomonas wolfei 304 species 0 863 1 10152 1 Lachnospiraceae 23 186803 0 27 family 169 1 Roseburia 2 0 841 genus 6 163 Roseburia hominis 1 species 301301 0 289 0 2719313 genus 1 208479 0 species 1 [Clostridium] bolteae 289 1 0 2719231 genus 340 species 84030 0 1 [Clostridium] saccharolyticum 340 699 1 0 28050 genus 699 [Eubacterium] eligens 1 0 39485 species 2097 1 Cellulosilyticum 2 genus 1 0 698776 0 29360 species 1 Cellulosilyticum lentocellum 2096 1 genus 1663717 0 567 567 Herbinix luporum 1 species 1679721 0 3 genus 1 0 830 1236 1 Butyrivibrio 0 43305 species 1 Butyrivibrio proteoclasticus 649 species 0 185008 1 Butyrivibrio hungatei 586 619 2 no rank 0 186928 0 39491 species 1 [Eubacterium] rectale 385 species 712991 0 1 Lachnospiraceae bacterium oral taxon 500 234 1064 genus 0 2569097 1 1 0 39488 species 1064 [Eubacterium] hallii 207244 0 genus 1 620 Anaerostipes hadrus 620 649756 0 species 1 644 2 0 572511 genus 2648079 0 no rank 1 269 1 species 1796616 0 269 Blautia sp. YL58 375 Blautia hansenii 1 species 0 1322 genus 3 0 1506553 4 Lachnoclostridium 1 1401 896 Lachnoclostridium phytofermentans 1 species 0 66219 Lachnoclostridium phocaeense 187 1871021 0 species 1 315 1 no rank 2608895 0 1 0 1834196 species 315 Lachnoclostridium sp. YL32 380 genus 2039240 0 1 1 28446 0 species 380 Anaerotignum propionicum 1 81982 Clostridiaceae 39 family 71 31979 0 Mordavella 2 0 1981033 genus 1 2 114627 0 genus 1697 1103 Alkaliphilus metalliredigens 1 208226 0 species 1 461876 0 species 594 Alkaliphilus oremlandii 763 0 390805 genus 1 1 species 1424294 0 763 Geosporobacter ferrireducens Clostridium 76178 1 1485 0 genus 314 30 2 2614128 0 no rank 801 685 Clostridium sp. BNL1100 1 species 0 755731 species 1042156 0 1 Clostridium sp. SY8519 116 1493 0 species 1 Clostridium cellulovorans 1755 species 1501 0 1 Clostridium pasteurianum 3947 0 1491 species 1 Clostridium botulinum 17716 Clostridium tyrobutyricum 1280 0 1519 species 1 1696 Clostridium chauvoei 1 46867 0 species Clostridium butyricum 2869 species 0 1492 1 0 84022 species 1 Clostridium aceticum 1166 3197 Clostridium baratii 1 1561 0 species 1 species 1513 0 2104 Clostridium tetani 1 species 1509 0 1797 Clostridium sporogenes 1 species 1488 0 1754 Clostridium acetobutylicum Clostridium carboxidivorans 2442 217159 0 species 1 1 species 0 169679 3369 Clostridium saccharobutylicum 1400 Clostridium autoethanogenum 1 0 84023 species 0 1548 species 1 Clostridium scatologenes 2374 1216932 0 species 1 Clostridium bornimense 2171 1894 Clostridium taeniosporum 1 species 394958 0 1 species 0 1497 1122 Clostridium formicaceticum 3849 Clostridium beijerinckii 1 0 1520 species Clostridium kluyveri 2118 1534 0 species 1 1556 Clostridium novyi 1 species 0 1542 1 species 0 36745 3194 Clostridium saccharoperbutylacetonicum 1502 0 species 1 Clostridium perfringens 3640 1874 Clostridium argentinense 1 species 0 29341 species 0 238834 1 Clostridium estertheticum 1790 1 1538 0 species 1452 Clostridium ljungdahlii 1494 0 species 1 Clostridium cochlearium 1537 genus 34 0 49082 4 Candidatus Arthromitus 3271 1 0 2638829 no rank 3 3237 1096 Candidatus Arthromitus sp. SFB-rat-Yit 1 species 1041504 0 Candidatus Arthromitus sp. SFB-mouse 1054 species 49118 0 1 1 species 0 1508644 1087 Candidatus Arthromitus sp. SFB-mouse-NL 147 1 family 0 990719 147 0 990721 genus 1 Christensenella massiliensis 147 1805714 0 species 1 31984 0 1 family 3 Heliobacteriaceae 1 189 genus 1 0 2697 2 Heliobacterium 1 188 species 35701 0 1 Heliobacterium modesticaldum 187 Peptococcaceae 1 6990 186807 0 family 14 28 450 2282740 0 genus 1 Desulfotomaculum gibsoniae 450 species 0 102134 1 2 genus 51196 0 2 Syntrophobotulus 286 1 1 species 0 51197 284 Syntrophobotulus glycolicus 409 genus 0 2282742 1 1 0 58138 species 409 Desulfotomaculum acetoxidans 1 genus 0 278993 254 species 863643 0 1 Thermincola potens 254 Candidatus Desulforudis 1 188 genus 1 471826 0 2 187 Candidatus Desulforudis audaxviator 1 471827 0 species genus 5 56112 0 4 Dehalobacter 628 1 1 55583 0 species 205 Dehalobacter restrictus 418 2 no rank 0 2635733 211 Dehalobacter sp. CF 1 species 0 1131462 207 Dehalobacter sp. DCA 1 species 0 1147129 36853 0 genus 4 5 Desulfitobacterium 1 1397 395 Desulfitobacterium dichloroeliminans 1 species 0 233055 1 species 142877 0 422 Desulfitobacterium metallireducens 1 species 0 36854 283 Desulfitobacterium dehalogenans Desulfitobacterium hafniense 293 49338 0 species 1 1 1418 Desulfotomaculum 5 15 genus 1562 0 1 species 0 1565 266 Desulfotomaculum nigrificans species 0 1833852 1 Desulfotomaculum ferrireducens 321 Desulfotomaculum reducens 497 59610 0 species 1 319 Desulfotomaculum ruminis 1 species 0 1564 0 51514 2 genus 2 Dehalobacterium 1 431 1 species 51515 0 429 Dehalobacterium formicoaceticum 0 79206 1 genus 4 Desulfosporosinus 1515 1 1 885581 0 species 531 Desulfosporosinus acidiphilus 487 Desulfosporosinus meridiei 1 0 79209 species Desulfosporosinus orientis 496 species 1563 0 1 9 no rank 538999 0 1233 198 1 0 1392389 genus 1 species 0 1297617 198 Intestinimonas butyriciproducens 166 1 genus 0 2717089 1 2086584 0 species 166 Mordavella sp. Marseille-P3756 3 family 1 539000 0 1 224 Clostridiales Family XVII. Incertae Sedis Thermaerobacter 223 1 1 genus 73918 0 2 1 species 0 73919 222 Thermaerobacter marianensis 0 543314 family 1 4 Clostridiales Family XIII. Incertae Sedis 1 645 345 [Eubacterium] sulci 1 0 143393 species 2 2 genus 0 86331 299 1 Mogibacterium species 0 114527 1 Mogibacterium diversum 297 1 family 0 216572 200 0 459786 genus 1 200 351091 0 species 1 Oscillibacter valericigenes 200 Peptostreptococcaceae 1 8491 186804 0 13 family 11 657 1 0 1411023 no rank Peptostreptococcaceae bacterium oral taxon 929 657 2081703 0 species 1 2 2 genus 186831 0 1062 1 Acetoanaerobium 1 species 0 1511 1060 Acetoanaerobium sticklandii 2 1870884 0 genus 3 1 4006 Clostridioides Clostridioides difficile 4003 species 1496 0 1 genus 0 44259 1 492 Filifactor alocis 492 0 143361 species 1 1 272 Peptoclostridium 2 1481960 0 1 genus Peptoclostridium acidaminophilum 271 species 1731 0 1 1849828 0 genus 1 2 Paeniclostridium 1 1989 1988 Paeniclostridium sordellii 1 species 1505 0 1276 1 Eubacteriaceae 5 186806 0 6 family 6 genus 33951 0 2 Acetobacterium 544 1 Acetobacterium woodii 538 0 33952 species 1 1 726 Eubacterium 2 0 1730 6 genus 1 species 1736 0 720 Eubacterium limosum 4472 family 0 2304686 11 genus 2304691 0 1 281 1 0 1510 species 281 [Clostridium] stercorarium 2 0 236752 1 genus 1 586 Fastidiosipila Fastidiosipila sanguinis 585 species 236753 0 1 0 2304692 genus 3 2084 Ruminiclostridium thermocellum 462 0 1515 species 1 [Clostridium] clariflavum 856 species 288965 0 1 Herbivorax saccincola 766 0 1677857 species 1 246 1 0 1637257 genus 246 Mageeibacillus indolicus 1 884684 0 species 140 1 2305130 0 no rank Ruminiclostridium sp. KB18 140 1834198 0 species 1 2 0 1508657 19 genus 1 663 Ruminiclostridium 644 [Clostridium] cellulolyticum 1 species 1521 0 genus 0 2304693 1 472 472 [Clostridium] thermosuccinogenes 1 84032 0 species 1716 1 Ruminococcaceae 10 30 family 541000 0 Ethanoligenens 1 225 0 253238 1 genus 2 Ethanoligenens harbinense 224 0 253239 species 1 252 0 946234 genus 1 252 Flavonifractor plautii 1 292800 0 species 615 genus 0 1263 2 1 species 1160721 0 307 Ruminococcus bicirculans 308 Ruminococcus albus 1 0 1264 species 131 1 no rank 0 2305133 Ruminococcaceae bacterium CPB6 131 species 0 1572656 1 199 552397 0 no rank 1 199 [Clostridium] cellulosi 1 species 0 29343 Faecalibacterium 264 1 0 216851 genus 1 2 263 Faecalibacterium prausnitzii 1 853 0 species 342 1 Symbiobacteriaceae 3 2 family 543349 0 2733 0 genus 5 2 Symbiobacterium 1 340 Symbiobacterium thermophilum 335 2734 0 species 1 1 5952 Halanaerobiales 12 order 8 0 53433 972 0 13 family 6 Halanaerobiaceae 3924 1 3 20 genus 0 2330 1 3230 Halanaerobium Halanaerobium praevalens 1687 2331 0 species 1 species 656519 0 1 Halanaerobium hydrogeniformans 1523 2 21 genus 32636 0 1 681 Halothermothrix Halothermothrix orenii 660 0 31909 species 1 Halobacteroidaceae 1 2020 53434 0 family 7 5 Acetohalobium 718 1 28186 0 genus 4 2 714 Acetohalobium arabaticum 1 28187 0 species Halobacteroides 1295 1 6 genus 0 42417 2 1 species 42422 0 1289 Halobacteroides halobius 223553 1 Bacilli 424 186 class 91061 0 Bacillales 1 154783 order 327 0 1385 260 8 0 186823 6 family 1357 1 Alicyclobacillaceae 3 genus 1 1129704 0 532 1 Kyrpidia 0 2055160 species 1 Kyrpidia sp. EA-1 260 0 33943 species 1 Kyrpidia tusciae 271 432330 0 genus 3 3 Tumebacillus 516 1 species 1903704 0 1 Tumebacillus avium 348 1 0 1214604 species 165 Tumebacillus algifaecis genus 0 29330 1 303 Alicyclobacillus acidocaldarius 303 405212 0 species 1 1 0 186821 family 228 no rank 0 663587 1 228 species 0 85683 1 [Bacillus] selenitireducens 228 1892 0 539002 no rank 8 1265 no rank 539742 0 7 7 0 33986 14 genus 1265 1 Exiguobacterium no rank 0 2644629 4 885 species 0 360911 1 Exiguobacterium sp. AT1b 157 species 1399115 0 1 Exiguobacterium sp. MH3 163 species 0 1849031 1 Exiguobacterium sp. U13-1 281 1 1224749 0 species 284 Exiguobacterium sp. ZWU0009 153 Exiguobacterium sibiricum 1 species 0 332410 Exiguobacterium antarcticum 213 132920 0 species 1 627 no rank 539738 0 1 627 genus 0 1378 1 627 1 no rank 0 2624949 1 species 1785995 0 627 Gemella sp. oral taxon 928 31112 1 Staphylococcaceae 41 family 45 0 90964 1508 1 Macrococcus 4 genus 16 0 69965 1 69966 0 species 506 Macrococcus caseolyticus 371 Macrococcus canis 1 1855823 0 species 615 1 0 2619255 no rank Macrococcus sp. IME1552 615 0 1898474 species 1 2 genus 2 2005363 0 1 593 Auricoccucs Auricoccus indicus 591 0 1849491 species 1 Staphylococcus 1 28776 255 genus 1279 0 33 species 28035 0 1 Staphylococcus lugdunensis 734 Staphylococcus felis 565 0 46127 species 1 0 985002 species 1 Staphylococcus argenteus 953 Staphylococcus muscae 357 1294 0 species 1 1 no rank 0 91994 830 1715860 0 species 1 Staphylococcus sp. AntiMn-1 830 332 Staphylococcus pettenkoferi 1 species 170573 0 Staphylococcus xylosus 1472 species 0 1288 1 1 1280 0 species 3000 Staphylococcus aureus Staphylococcus saprophyticus 766 0 29385 species 1 1220 Staphylococcus equorum 1 0 246432 species 29384 0 species 1 Staphylococcus kloosii 777 1577 Staphylococcus epidermidis 1 species 1282 0 1 0 1292 species 820 Staphylococcus warneri 690 Staphylococcus carnosus 1 species 0 1281 Staphylococcus condimenti 683 0 70255 species 1 1 29388 0 species 864 Staphylococcus capitis Staphylococcus sciuri 1049 1296 0 species 1 1 0 643214 species 922 Staphylococcus stepanovicii 1 0 70258 species 539 Staphylococcus piscifermentans species 1284 0 1 Staphylococcus hyicus 481 1 species 155085 0 473 Staphylococcus lutrae Staphylococcus haemolyticus 978 species 0 1283 1 1 1295 0 species 600 Staphylococcus schleiferi 1 45972 0 species 1931 Staphylococcus pasteuri 1 species 308354 0 910 Staphylococcus simiae species 0 29382 1 Staphylococcus cohnii 810 1 1286 0 species 546 Staphylococcus simulans 0 985762 species 1 Staphylococcus agnetis 561 1 species 61015 0 782 Staphylococcus succinus 1 species 283734 0 532 Staphylococcus pseudintermedius Staphylococcus nepalensis 810 species 0 214473 1 species 0 1290 1 Staphylococcus hominis 957 1 genus 0 45669 190 190 Salinicoccus halodurans 1 species 0 407035 27 family 21 0 186818 1 11039 Planococcaceae Kurthia 627 1 genus 2 0 1649 2 1 2644826 0 no rank 625 species 1750719 0 1 Kurthia sp. 11kri321 625 1 2877 Sporosarcina 5 0 1569 genus 24 Sporosarcina ureae 1422 species 1571 0 1 1 species 1476 0 803 Sporosarcina psychrophila 0 2647733 no rank 2 628 species 1930764 0 1 Sporosarcina sp. P33 327 Sporosarcina sp. P37 301 0 1930546 species 1 648802 0 4 genus 2 Rummeliibacillus 1 561 557 Rummeliibacillus stabekisii 1 species 241244 0 4970 1 Planococcus 12 genus 41 0 1372 2 no rank 2662419 0 809 559 Planococcus sp. PAMC 21323 1 species 0 1526927 1 2058136 0 species 250 Planococcus sp. MB-3u-03 663 Planococcus sp. L10.15 1 species 0 1302659 Planococcus halocryophilus 640 species 1215089 0 1 0 192421 species 1 Planococcus maritimus 445 1 1374 0 species 537 Planococcus kocurii 1 200991 0 species 201 Planococcus rifietoensis 1 161360 0 species 314 Planococcus antarcticus 1 1038856 0 species 127 Planococcus plakortidis Planococcus donghaensis 601 species 414778 0 1 Planococcus faecalis 592 species 1598147 0 1 Solibacillus 1 1478 0 648800 genus 7 3 0 2637870 no rank 1 697 1 2048654 0 species 697 Solibacillus sp. R5-41 774 Solibacillus silvestris 1 76853 0 species 2 genus 4 0 157226 1 505 Jeotgalibacillus 501 Jeotgalibacillus malaysiensis 1 0 1508404 species family 41 186822 0 46 Paenibacillaceae 1 21728 1 230 Thermobacillus 2 2 genus 0 76632 Thermobacillus composti 228 species 377615 0 1 genus 9 0 55080 4 Brevibacillus 1 2078 1 1465 0 species 1093 Brevibacillus laterosporus species 0 54913 1 Brevibacillus formosus 387 1 species 1393 0 589 Brevibacillus brevis 0 44249 genus 103 36 Paenibacillus 18728 1 1 species 0 61624 741 Paenibacillus mucilaginosus 1 1763538 0 species 484 Paenibacillus crassostreae 1 species 0 159743 271 Paenibacillus terrae Paenibacillus odorifer 524 species 0 189426 1 Paenibacillus swuensis 288 species 0 1178515 1 639 Paenibacillus graminis 1 species 0 189425 416 Paenibacillus borealis 1 160799 0 species 169760 0 species 1 Paenibacillus stellifer 201 0 162209 species 1 Paenibacillus naphthalenovorans 254 13 0 185978 no rank 6336 1536770 0 species 1 Paenibacillus sp. FSL R5-0345 870 2069255 0 species 1 Paenibacillus sp. lzh-N1 357 1 481743 0 species 239 Paenibacillus sp. Y412MC10 1 1536775 0 species 458 Paenibacillus sp. FSL H7-0737 1536774 0 species 1 Paenibacillus sp. FSL H7-0357 424 310 Paenibacillus sp. FSL R7-0273 1 0 1536772 species 1 species 0 1536773 342 Paenibacillus sp. FSL R7-0331 0 324057 species 1 Paenibacillus sp. JDR-2 295 488 Paenibacillus sp. BIHB4019 1 1870819 0 species 1329 Paenibacillus sp. IHBB 10380 1 species 1566358 0 1536771 0 species 1 Paenibacillus sp. FSL R5-0912 357 Paenibacillus sp. FSL P4-0081 562 1536769 0 species 1 1 1695218 0 species 305 Paenibacillus sp. 32O-W 536 Paenibacillus peoriae 1 0 59893 species 339 Paenibacillus xylanexedens 1 species 528191 0 species 172713 0 1 Paenibacillus kribbensis 311 211 Paenibacillus yonginensis 1 species 1462996 0 species 1616788 0 1 Paenibacillus bovis 609 Paenibacillus beijingensis 327 1126833 0 species 1 species 1870820 0 1 Paenibacillus ihbetae 263 204 Paenibacillus sabinae 1 species 365617 0 Paenibacillus polymyxa 2831 species 0 1406 1 Paenibacillus larvae 587 1464 0 species 1 Paenibacillus durus 614 species 0 44251 1 349 1 0 2044880 species group 1 species 483937 0 349 Paenibacillus riograndensis 0 414771 species 1 Paenibacillus donghaensis 1290 3 0 85151 no rank 651 3 0 55079 3 genus 1 651 Aneurinibacillus Aneurinibacillus soli 348 0 1500254 species 1 300 2642329 0 no rank 1 species 1450761 0 1 Aneurinibacillus sp. XH2 300 186820 0 4 family 9 Listeriaceae 5391 1 Brochothrix 1 701 1 genus 0 2755 2 1 species 0 2756 700 Brochothrix thermosphacta Listeria 1 4686 genus 56 1637 0 6 Listeria monocytogenes 1759 species 1639 0 1 species 1640 0 1 Listeria seeligeri 542 species 1642 0 1 Listeria innocua 654 Listeria welshimeri 669 0 1643 species 1 Listeria ivanovii 1006 species 1638 0 1 0 186824 family 3 173 1677050 0 1 genus 2 Novibacillus 1 170 169 Novibacillus thermophilus 1 species 0 1471761 3 Laceyella 1 genus 0 292635 1 81536 Bacillaceae 116 family 121 186817 0 1 0 459532 genus 297 species 0 586416 1 Terribacillus aidingensis 297 150247 0 genus 49 6 Anoxybacillus 2952 1 no rank 0 2639704 2 1043 Anoxybacillus sp. B2M1 564 species 1490052 0 1 species 0 1490057 1 Anoxybacillus sp. B7M1 479 Anoxybacillus gonensis 524 species 0 198467 1 867 Anoxybacillus flavithermus 1 0 33934 species species 0 294699 1 Anoxybacillus amylolyticus 469 29331 0 4 genus 2 Amphibacillus 1 649 1 species 0 1449 645 Amphibacillus xylanus genus 2675234 0 5 3422 species 0 79880 1 Bacillus clausii 710 651 Bacillus pseudofirmus 1 species 0 79885 911 Bacillus krulwichiae 1 0 199441 species 1 species 0 86665 392 Bacillus halodurans 1 300825 0 species 758 Bacillus lehensis 1 genus 0 1906945 474 1 species 1426 0 474 Parageobacillus thermoglucosidasius 1 0 351195 genus 185 1 species 1230341 0 185 Salimicrobium jeotgali 84406 0 20 genus 7 Virgibacillus 4824 1 1 species 163877 0 821 Virgibacillus necropolis Virgibacillus halodenitrificans 732 0 1482 species 1 1658 0 2620237 no rank 2 702 Virgibacillus sp. SK37 1 403957 0 species 1 species 1911587 0 956 Virgibacillus sp. 6R species 0 2017483 1 Virgibacillus phasianinus 735 species 0 1473 1 Virgibacillus pantothenticus 858 2 1 genus 182709 0 1 1634 Oceanobacillus 1633 Oceanobacillus iheyensis 1 species 0 182710 Fictibacillus 967 1 1 genus 1329200 0 3 Fictibacillus arsenicus 457 species 255247 0 1 1 species 0 1221500 509 Fictibacillus phosphorivorans 337 175304 0 genus 1 Lentibacillus amyloliquefaciens 337 species 0 1472767 1 827 1 Halobacillus 3 genus 3 45667 0 species 1570 0 1 Halobacillus halophilus 364 species 402384 0 1 Halobacillus mangrovi 460 15 126 genus 129337 0 1 3631 Geobacillus Geobacillus genomosp. 3 169 0 1921421 species 1 129338 0 species 1 Geobacillus subterraneus 171 1070 4 1505648 0 species group 1 169283 0 species 165 Geobacillus lituanicus 1462 0 species 1 Geobacillus kaustophilus 157 206 Geobacillus thermocatenulatus 1 species 33938 0 542 Geobacillus thermoleovorans 1 species 33941 0 1 species 1422 0 314 Geobacillus stearothermophilus Geobacillus thermodenitrificans 337 33940 0 species 1 6 no rank 2642459 0 1444 species 581103 0 1 Geobacillus sp. Y4.1MC1 395 Geobacillus sp. Y412MC52 89 0 550542 species 1 species 0 1233873 1 Geobacillus sp. GHH01 106 species 0 691437 1 Geobacillus sp. C56-T3 262 0 471223 species 1 Geobacillus sp. WCH70 497 95 Geobacillus sp. Y412MC61 1 species 0 544556 1710 0 2675229 genus 2 390 Bacillus muralis 1 0 264697 species Bacillus simplex 1320 1478 0 species 1 1 52647 Bacillus 58 1024 genus 1386 0 Bacillus endophyticus 1111 0 135735 species 1 species 0 1413 1 Bacillus cellulosilyticus 856 932 Bacillus safensis 1 species 561879 0 561 Bacillus horikoshii 1 species 0 79883 1 0 86664 species 947 Bacillus flexus Bacillus gibsonii 120 species 79881 0 1 5689 0 653685 species group 9 1 0 1452 species 583 Bacillus atrophaeus Bacillus licheniformis 405 1402 0 species 1 320 Bacillus paralicheniformis 1 1648923 0 species species 1423 0 1 Bacillus subtilis 2283 1 species 119858 0 293 Bacillus sonorensis Bacillus vallismortis 78 72361 0 species 1 1727 0 1938374 species subgroup 3 768 Bacillus velezensis 1 species 0 492670 1 species 0 659243 136 Bacillus siamensis species 1390 0 1 Bacillus amyloliquefaciens 823 1 species group 1792192 0 460 1 species 0 293387 460 Bacillus altitudinis species 412384 0 1 Bacillus aryabhattai 698 Bacillus glycinifermentans 433 species 0 1664069 1 4943 0 185979 no rank 19 species 2026248 0 1 Bacillus sp. 1s-1 189 1 0 666686 species 914 Bacillus sp. 1NLA3E 109 Bacillus sp. 275 1 species 1941347 0 436 Bacillus sp. WP8 1 species 0 756828 species 0 1446792 1 Bacillus sp. Pc3 115 126 Bacillus sp. YP1 1 1574141 0 species 1 1628753 0 species 107 Bacillus sp. LM 4-2 1 species 0 2049935 73 Bacillus sp. Lzh-5 1 species 0 2009331 178 Bacillus sp. MD-5 Bacillus sp. X1(2014) 758 0 1565991 species 1 1 0 1570330 species 70 Bacillus sp. BH072 0 1774743 species 1 Bacillus sp. SDLI1 140 249 Bacillus sp. FJAT-14266 1 1837130 0 species 1 1827146 0 species 687 Bacillus sp. IHB B 7164 1 species 0 98228 224 Bacillus sp. OxB-1 1 species 1409 0 83 Bacillus sp. (in: Bacteria) species 0 1127744 1 Bacillus sp. JS 175 189 Bacillus sp. H15-1 1 0 1856406 species 563169 0 species 1 Bacillus sp. SJ-10 121 species 0 1398 1 Bacillus coagulans 589 Bacillus infantis 293 species 0 324767 1 3057 Bacillus megaterium 1 species 1404 0 species 0 632773 1 Bacillus beveridgei 248 0 86661 species group 10 25252 Bacillus bombysepticus 813 species 0 658666 1 species 580165 0 1 Bacillus cytotoxicus 744 1392 0 species 1 Bacillus anthracis 1008 8667 Bacillus cereus 1 1396 0 species Bacillus mycoides 3216 species 0 1405 1 species 1428 0 1 Bacillus thuringiensis 8104 659 Bacillus toyonensis 1 species 0 155322 2041 3 no rank 0 2750818 1 species 0 1892404 546 Bacillus sp. ABP14 1839798 0 species 1 Bacillus sp. FDAARGOS_235 901 594 Bacillus sp. HBCD-sjtu 1 species 2053832 0 1141 Bacillus cohnii 1 species 33932 0 1872 Bacillus pumilus 1 0 1408 species Bacillus xiamenensis 361 species 1178537 0 1 1479 0 species 1 Bacillus smithii 416 991 Bacillus weihaiensis 1 species 1547283 0 1 species 1471 0 653 Bacillus methanolicus 5 23 genus 400634 0 4591 1 Lysinibacillus 840 no rank 0 2636778 1 Lysinibacillus sp. YS11 840 species 0 2072025 1 1 0 1421 species 2241 Lysinibacillus sphaericus 1 species 0 1145276 763 Lysinibacillus varians Lysinibacillus fusiformis 724 0 28031 species 1 627 genus 0 1055323 1 1 species 33936 0 627 Aeribacillus pallidus 1641 2675230 0 genus 2 0 665099 species 1 Bacillus oceanisediminis 522 1119 Bacillus kochii 1 859143 0 species 1 68584 Lactobacillales 163 order 150 0 186826 1 no rank 0 263855 473 Lactobacillales bacterium 473 species 0 1993866 1 10 family 14 0 186828 4752 1 Carnobacteriaceae 1 genus 0 191769 858 no rank 2632303 0 1 858 858 Marinilactibacillus sp. 15R 1 species 1911586 0 Jeotgalibaca 933 1 1470540 0 genus 4 3 466 0 2621505 no rank 1 0 1903686 species 1 Jeotgalibaca sp. PTS2502 466 Jeotgalibaca dankookensis 463 0 708126 species 1 Carnobacterium 2947 1 18 genus 2747 0 5 1 2751 0 species 1306 Carnobacterium maltaromaticum Carnobacterium inhibens 613 species 147709 0 1 1010 257487 0 no rank 2 Carnobacterium sp. 17-4 595 208596 0 species 1 species 0 1564681 1 Carnobacterium sp. CP1 415 Enterococcaceae 9093 1 27 family 81852 0 19 21 genus 2737 0 3 Vagococcus 1254 1 1 species 0 519472 696 Vagococcus teuberi Vagococcus penaei 537 species 633807 0 1 752 1 0 51668 genus Tetragenococcus halophilus 752 species 51669 0 1 Melissococcus 1 875 6 genus 33969 0 2 1 species 33970 0 869 Melissococcus plutonius 12 0 1350 46 genus 6185 1 Enterococcus species 1354 0 1 Enterococcus hirae 620 Enterococcus thailandicus 586 species 417368 0 1 Enterococcus mundtii 490 species 53346 0 1 Enterococcus durans 553 53345 0 species 1 323 Enterococcus casseliflavus 1 0 37734 species 2005703 0 species 1 Enterococcus wangshanyuanii 540 965 2608891 0 no rank 3 1 species 0 2057791 316 Enterococcus sp. CR-Ec1 1 species 2060307 0 337 Enterococcus sp. FDAARGOS_375 1 0 2060306 species 312 Enterococcus sp. FDAARGOS_163 Enterococcus faecium 1058 species 0 1352 1 1004 Enterococcus faecalis 1 1351 0 species Lactobacillaceae 25121 1 family 47 33958 0 58 3 genus 0 2767842 1842 1 0 60520 species 219 Lactobacillus paraplantarum 1 1590 0 species 1371 Lactobacillus plantarum species 1589 0 1 Lactobacillus pentosus 252 161 genus 0 1578 16 Lactobacillus 8040 1 1 species 1579 0 486 Lactobacillus acidophilus 554 Lactobacillus amylovorus 1 species 1604 0 Lactobacillus gasseri 1041 species 1596 0 1 1136 Lactobacillus johnsonii 1 0 33959 species 1 0 109790 species 434 Lactobacillus jensenii species 267818 0 1 Lactobacillus kefiranofaciens 326 Lactobacillus delbrueckii 754 0 1584 species 1 1 1600 0 species 373 Lactobacillus acetotolerans 1 species 0 83683 251 Lactobacillus amylolyticus 1587 0 species 1 Lactobacillus helveticus 837 species 52242 0 1 Lactobacillus gallinarum 376 1311 2620435 0 no rank 4 437 Lactobacillus sp. wkB8 1 0 1545702 species species 0 2099789 1 Lactobacillus sp. CBA3606 261 species 0 2099788 1 Lactobacillus sp. CBA3605 384 0 2108362 species 1 Lactobacillus sp. D1501 229 2 genus 0 2767885 840 Lactobacillus curvatus 287 0 28038 species 1 1 species 0 1599 553 Lactobacillus sakei 150 1 genus 0 2767876 1 1603 0 species 150 Lactobacillus amylophilus 2759736 0 genus 3 1379 512 Lactobacillus casei 1 0 1582 species 429 Lactobacillus paracasei 1 1597 0 species species 47715 0 1 Lactobacillus rhamnosus 438 0 2767893 genus 3 734 152331 0 species 1 Lactobacillus parabuchneri 193 1 species 1581 0 228 Lactobacillus buchneri species 0 1138822 1 Lactobacillus curieae 313 genus 0 2767881 2 1001 442 Lactobacillus sanfranciscensis 1 0 1625 species 1 0 53444 species 559 Lactobacillus lindneri Pediococcus 1 2087 0 1253 24 genus 6 0 187452 species 1 Pediococcus claussenii 433 species group 0 1670797 1 279 Pediococcus acidilactici 279 1254 0 species 1 379 Pediococcus inopinatus 1 114090 0 species 1 species 0 51663 373 Pediococcus damnosus 599 Pediococcus pentosaceus 1 species 0 1255 2416 genus 0 2767887 4 species 0 1624 1 Lactobacillus salivarius 1640 230 Lactobacillus agilis 1 0 1601 species 1 1623 0 species 247 Lactobacillus ruminis 299 Lactobacillus acidipiscis 1 species 89059 0 321 genus 0 2767877 1 1 0 148814 species 321 Lactobacillus kunkeei 1 0 2767892 genus 349 species 0 240427 1 Lactobacillus paracollinoides 349 0 2767890 genus 1 411 1193095 0 species 1 Lactobacillus hokkaidonensis 411 0 2742598 genus 3 1458 1016 Lactobacillus reuteri 1 species 1598 0 Lactobacillus mucosae 216 97478 0 species 1 1 0 1613 species 226 Lactobacillus fermentum 736 0 2767889 genus 2 Lactobacillus backii 374 species 0 375175 1 species 0 1610 1 Lactobacillus coryniformis 362 3 0 2767886 genus 531 107 Lactobacillus koreensis 1 637971 0 species 1 0 267363 species 79 Lactobacillus zymae 1 0 1580 species 345 Lactobacillus brevis 2779 6 genus 0 2767879 Lactobacillus alimentarius 438 species 0 1602 1 1 species 1847728 0 600 Lactobacillus allii 392416 0 species 1 Lactobacillus crustorum 505 species 1612 0 1 Lactobacillus farciminis 415 0 1007676 species 1 Lactobacillus ginsenosidimutans 498 Lactobacillus heilongjiangensis 323 1074467 0 species 1 8 0 186827 family 3 1736 1 Aerococcaceae 1 1733 Aerococcus 7 1375 0 genus 14 1 species 0 87541 284 Aerococcus christensenii species 0 1377 1 Aerococcus viridans 322 1 species 0 1376 330 Aerococcus urinae species 51665 0 1 Aerococcus urinaeequi 407 1 species 119206 0 171 Aerococcus sanguinicola species 0 128944 1 Aerococcus urinaehominis 205 1300 0 family 27 49 Streptococcaceae 21998 1 17301 1 Streptococcus 43 184 genus 0 1301 1 1302 0 species 672 Streptococcus gordonii 45634 0 species 1 Streptococcus cristatus 154 Streptococcus macedonicus 344 59310 0 species 1 230 Streptococcus acidominimus 1 1326 0 species 209 Streptococcus halotolerans 1 species 0 1814128 2 119603 0 species group 874 317 Streptococcus dysgalactiae 1 1334 0 species 557 Streptococcus equi 1 species 1336 0 Streptococcus agalactiae 902 species 1311 0 1 0 257758 species 1 Streptococcus pseudopneumoniae 218 1422 no rank 0 2608887 7 species 0 1902136 1 Streptococcus sp. NPS 308 173 142 Streptococcus sp. I-G2 1 0 1156431 species 170 Streptococcus sp. A12 1 species 1759399 0 Streptococcus sp. FDAARGOS_192 229 species 1839799 0 1 0 1319 species 1 Streptococcus sp. 'group B' 408 Streptococcus sp. oral taxon 431 159 species 0 712633 1 species 0 1156433 1 Streptococcus sp. I-P16 141 1 0 1303 species 545 Streptococcus oralis species 0 1346 1 Streptococcus iniae 393 Streptococcus himalayensis 256 species 0 1888195 1 1 species 1314 0 848 Streptococcus pyogenes species 0 400065 1 Streptococcus merionis 258 0 1309 species 1 Streptococcus mutans 618 species 1349 0 1 Streptococcus uberis 426 1 species 0 1348 489 Streptococcus parauberis Streptococcus gallolyticus 643 species 315405 0 1 1 1304 0 species 757 Streptococcus salivarius 1335 0 species 1 Streptococcus equinus 224 species 0 1318 1 Streptococcus parasanguinis 253 1 species 0 102684 536 Streptococcus infantarius Streptococcus pantholopis 253 species 0 1811193 1 species 0 1313 1 Streptococcus pneumoniae 707 1 0 1307 species 1036 Streptococcus suis 1489 species group 0 671232 3 556 Streptococcus intermedius 1 0 1338 species species 1328 0 1 Streptococcus anginosus 663 species 76860 0 1 Streptococcus constellatus 270 species 0 28037 1 Streptococcus mitis 544 268 Streptococcus pluranimalium 1 species 0 82348 1 1825069 0 species 260 Streptococcus marmotae species 0 150055 1 Streptococcus lutetiensis 372 1 species 1305 0 159 Streptococcus sanguinis 272 Streptococcus pasteurianus 1 197614 0 species Streptococcus thermophilus 486 0 1308 species 1 1 4670 Lactococcus 5 4 genus 0 1357 0 1358 species 1 Lactococcus lactis 3191 species 1363 0 1 Lactococcus garvieae 685 1 species 1366 0 235 Lactococcus raffinolactis 1364 0 species 1 Lactococcus piscium 555 11 family 81850 0 17 Leuconostocaceae 5261 1 6 genus 10 46255 0 1 1554 Weissella 1 0 1631871 species 347 Weissella jogaejeotgali 137591 0 species 1 Weissella cibaria 231 1 0 1249 species 325 Weissella paramesenteroides species 0 759620 1 Weissella ceti 285 1 165096 0 species 356 Weissella koreensis 9 genus 24 1243 0 1 3322 Leuconostoc Leuconostoc citreum 311 species 33964 0 1 Leuconostoc gelidum 757 species 0 1244 1 1 1245 0 species 743 Leuconostoc mesenteroides Leuconostoc kimchii 327 136609 0 species 1 Leuconostoc lactis 147 species 1246 0 1 species 0 1252 1 Leuconostoc carnosum 547 1 species 255248 0 156 Leuconostoc garlicum 310 1 no rank 0 2685106 Leuconostoc sp. C2 310 species 979982 0 1 374 0 46254 genus 1 374 Oenococcus oeni 1 species 1247 0 0 1737404 19 class 16 Tissierellia 5851 1 2 0 1737407 no rank 538 2 0 1582879 genus 2 1 538 Ezakiella Ezakiella massiliensis 536 species 0 1852374 1 Tissierellales 1 5294 1737405 0 19 order 13 0 2042895 1 family 3 Gottschalkiaceae 1 1350 1 1349 Gottschalkia 2 1505664 0 4 genus 1345 Gottschalkia acidurici 1 species 0 1556 1 3925 Peptoniphilaceae 9 0 1570339 family 9 1 1177 Anaerococcus 3 0 165779 genus 2 1870984 0 species 1 Anaerococcus mediterraneensis 563 1 species 0 33034 612 Anaerococcus prevotii 0 150022 genus 1 847 Finegoldia magna 847 species 0 1260 1 Peptoniphilus 635 1 genus 2 0 162289 2 633 0 2637196 no rank 1 Peptoniphilus sp. ING2-D1G 633 0 1912856 species 1 1 1161127 0 genus 170 1 0 1852373 species 170 Murdochiella vaginalis 1087 genus 543311 0 1 1 species 33033 0 1087 Parvimonas micra 310 1676648 0 class 4 1 310 Limnochordales 4 1676649 0 order 3 1676650 0 1 family 3 Limnochordaceae 1 307 20 genus 1676651 0 2 Limnochorda 1 306 1 species 0 1555112 286 Limnochorda pilosa 1078 no rank 0 84086 1 endosymbiont 'TC1' of Trimyema compressum 1078 0 243899 species 1 15 class 0 909932 29 Negativicutes 5562 1 0 1843488 2 order 5 Acidaminococcales 345 1 5 family 0 909930 4 Acidaminococcaceae 1 343 338 1 Acidaminococcus 3 1 genus 904 0 134 Acidaminococcus intestini 1 187327 0 species Acidaminococcus fermentans 203 905 0 species 1 0 909929 order 18 13 Selenomonadales 1 3493 3 1843490 0 family 1829 3 0 365348 genus 8 1 1829 Pelosinus 931 1 no rank 0 2629460 Pelosinus sp. UFO1 931 species 484770 0 1 species 0 365349 1 Pelosinus fermentans 890 family 8 1843491 0 9 Selenomonadaceae 1 1646 Selenomonas 880 1 29 genus 0 970 6 Selenomonas sputigena 147 69823 0 species 1 no rank 0 2637378 3 460 species 0 1884263 1 Selenomonas sp. oral taxon 920 134 Selenomonas sp. oral taxon 478 162 0 712538 species 1 Selenomonas sp. oral taxon 136 164 species 0 713030 1 1 971 0 species 244 Selenomonas ruminantium Megamonas 1 758 genus 3 158846 0 2 species 158847 0 1 Megamonas hypermegale 755 1 1709 Veillonellales 10 order 9 0 1843489 Veillonellaceae 1 1700 15 family 0 31977 9 146 genus 909928 0 1 species 1702287 0 1 Negativicoccus massiliensis 146 2 2 genus 39948 0 473 1 Dialister species 0 39950 1 Dialister pneumosintes 471 4 genus 0 29465 3 Veillonella 768 1 553 Veillonella parvula 1 0 29466 species 1 248315 0 species 211 Veillonella rodentium 6 genus 0 906 2 Megasphaera 298 1 292 Megasphaera elsdenii 1 species 907 0 1 no rank 33974 0 137 0 1930845 genus 1 137 species 1871025 0 1 Ndongobacter massiliensis 137 Erysipelotrichia 1948 1 4 class 526524 0 10 9 0 526525 order 9 1944 1 Erysipelotrichales Erysipelotrichaceae 1935 1 13 family 0 128827 8 1 151 Faecalibaculum 2 1729679 0 1 genus 1702221 0 species 1 Faecalibaculum rodentium 150 1 0 191303 genus 539 539 no rank 0 2638206 1 539 Turicibacter sp. H121 1 0 1712675 species 1 0 544447 no rank 349 species 0 1834207 1 Erysipelotrichaceae bacterium I46 349 Erysipelothrix 883 1 1647 0 genus 6 3 1 1648 0 species 442 Erysipelothrix rhusiopathiae 1 species 1514105 0 435 Erysipelothrix larvae 1859062 0 no rank 2 188 Thermobaculum 188 1 262406 0 genus 2 2 species 0 166501 1 Thermobaculum terrenum 186 35 phylum 0 1297 6631 Deinococci 6631 1 0 188787 class 24 35 0 2762275 order 3 314 1 314 Trueperaceae 3 2 family 0 332247 2 genus 23 332248 0 312 1 Truepera 1 species 332249 0 289 Truepera radiovictrix 0 68933 order 12 16 Thermales 3106 1 3094 1 Thermaceae 15 24 family 188786 0 8 genus 29 270 0 1 2014 Thermus Thermus parvatiensis 232 456163 0 species 1 186 no rank 0 2619321 1 1 0 1111069 species 186 Thermus sp. CCB_US3_UF1 205 Thermus brockianus 1 species 0 56956 680 Thermus thermophilus 1 0 274 species 1 species 0 37636 137 Thermus scotoductus species 0 271 1 Thermus aquaticus 241 1 species 0 56957 304 Thermus oshimai 297 1 genus 0 208447 297 Oceanithermus profundus 1 0 187137 species 578 1 Meiothermus 3 genus 2 65551 0 1 0 277 species 348 Meiothermus ruber 228 Meiothermus silvanus 1 0 52022 species 2 0 186191 1 genus 1 181 Marinithermus 180 Marinithermus hydrothermalis 1 species 186192 0 118964 0 order 59 15 Deinococcales 1 3187 0 183710 family 14 14 Deinococcaceae 3128 1 13 genus 41 0 1298 1 3114 Deinococcus species 1768108 0 1 Deinococcus actinosclerus 220 155 Deinococcus deserti 1 species 0 310783 296 1 no rank 0 2623546 species 2080419 0 1 Deinococcus sp. NW-56 296 184 Deinococcus peraridilitoris 1 species 432329 0 Deinococcus radiodurans 212 0 1299 species 1 425 Deinococcus proteolyticus 1 55148 0 species 0 1182571 species 1 Deinococcus swuensis 278 309887 0 species 1 Deinococcus maricopensis 301 1 species 68909 0 182 Deinococcus geothermalis 1 1182568 0 species 235 Deinococcus puniceus 295 Deinococcus soli Cha et al. 2016 1 species 0 1309411 species 502394 0 1 Deinococcus gobiensis 290 5 0 67819 phylum 358 0 1663419 2 class 5 Fimbriimonadia 358 1 1 356 Fimbriimonadales 4 0 1663425 3 order 353 1 Fimbriimonadaceae 3 family 1 0 1663426 0 1005038 genus 4 2 Fimbriimonas 1 352 Fimbriimonas ginsengisoli 348 1005039 0 species 1 25553 58 phylum 0 203691 58 0 203692 class 43 1 25553 Spirochaetia 3765 9 order 0 1643688 Leptospiraceae 1 3765 family 22 0 170 9 2 genus 1 0 338321 1 204 Turneriella Turneriella parva 203 29510 0 species 1 6 171 0 genus 30 3539 1 Leptospira 337 Leptospira alstonii 1 28452 0 species 28183 0 species 1 Leptospira santarosai 348 654 Leptospira biflexa 1 species 0 172 575 Leptospira borgpetersenii 1 174 0 species Leptospira interrogans 1595 species 173 0 1 1 6335 Brachyspirales 7 order 30 0 1643686 5 family 0 143786 6 Brachyspiraceae 1 6305 0 29521 14 genus 5 Brachyspira 6300 1 1461 Brachyspira intermedia 1 84377 0 species 1516 Brachyspira hyodysenteriae 1 species 159 0 Brachyspira murdochii 1327 84378 0 species 1 1982 Brachyspira pilosicoli 1 species 0 52584 Spirochaetales 1 15410 39 order 136 0 41 23 137 0 family 35 5081 1 Spirochaetaceae Spirochaeta 1 602 4 genus 146 0 3 Spirochaeta africana 308 46355 0 species 1 290 Spirochaeta thermophila 1 species 154 0 274 genus 0 1911556 1 Sediminispirochaeta smaragdinae 274 species 0 55206 1 12 0 157 genus 17 1 2910 Treponema 309 Treponema primitia 1 88058 0 species 1 158 0 species 337 Treponema denticola no rank 0 2638727 1 193 Treponema sp. OMZ 838 193 species 0 1539298 1 164 Treponema azotonutricium 1 species 0 150829 1 species 160 0 102 Treponema pallidum 403 Treponema putidum 1 221027 0 species Treponema pedis 437 species 409322 0 1 81028 0 species 1 Treponema brennaborense 150 345 Treponema caldarium 1 species 215591 0 99 Treponema paraluiscuniculi 1 0 53435 species Treponema succinifaciens 354 species 0 167 1 genus 2 1616789 0 2 Salinispira 1 798 1 1307761 0 species 796 Salinispira pacifica 1 462 Sphaerochaeta 4 0 399320 genus 4 species 1131703 0 1 Sphaerochaeta globosa 152 Sphaerochaeta pleomorpha 179 species 1131707 0 1 127 Sphaerochaeta coccoides 1 0 273376 species 17 1643685 0 family 33 10290 1 Borreliaceae 1 4272 Borreliella 8 genus 269 0 64895 568 Borreliella bissettii 1 species 64897 0 species 1674146 0 1 Borrelia mayonii 577 437 Borreliella valaisiana 1 species 62088 0 species 29519 0 1 Borreliella garinii 879 560 Borreliella afzelii 1 29518 0 species 573 Borreliella burgdorferi 1 0 139 species 1 species 0 664662 409 Borreliella bavariensis 8 138 0 genus 129 5985 1 Borrelia 516 Borrelia hermsii 1 species 140 0 1 141 0 species 591 Borrelia parkeri 1295 Borrelia miyamotoi 1 species 0 47466 811 Borrelia recurrentis 1 0 44449 species 597 Borrelia anserina 1 species 143 0 Borrelia turicatae 619 species 0 142 1 Borrelia duttonii 1427 species 40834 0 1 3 0 2323 no rank 921 921 3 clade 1783234 0 819 0 95901 clade 2 819 2 2497643 0 class 819 order 0 2497644 2 819 0 2497645 family 2 819 1 Candidatus Babela 2 10 genus 0 1551504 species 673862 0 1 Candidatus Babela massiliensis 809 102 1 95818 0 phylum no rank 1895827 0 1 102 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 102 species 2056494 0 1 289 phylum 0 2138240 4 Coprothermobacteria 289 1 9 class 0 2138243 4 280 1 Coprothermobacterales 3 4 order 2138246 0 0 2138247 1 family 2 Coprothermobacteraceae 1 276 275 0 68335 genus 1 1 0 35786 species 275 Coprothermobacter proteolyticus 29 phylum 0 200783 8091 Aquificae 8091 1 187857 0 class 18 29 22 32069 0 order 12 1 6843 Aquificales 64898 0 4 family 13 Aquificaceae 1 3235 6 0 168657 81 genus 1 2634 Hydrogenobaculum 2553 0 2622382 no rank 5 1 species 547143 0 501 Hydrogenobaculum sp. 3684 species 0 547145 1 Hydrogenobaculum sp. SHO 501 1 0 380749 species 548 Hydrogenobaculum sp. Y04AAS1 501 Hydrogenobaculum sp. SN 1 species 547146 0 502 Hydrogenobaculum sp. HO 1 species 547144 0 168 genus 0 939 1 1 0 940 species 168 Hydrogenobacter thermophilus 2 1 genus 2713 0 1 130 Aquifex Aquifex aeolicus 129 0 63363 species 1 3 0 75905 1 genus 299 1 Thermocrinis 163 Thermocrinis albus 1 species 0 136094 135 Thermocrinis ruber 1 0 75906 species no rank 0 90150 2 318 Thermosulfidibacter 318 1 genus 3 0 412592 2 315 Thermosulfidibacter takaii 1 412593 0 species family 2 0 224027 6 Hydrogenothermaceae 3278 1 3 27 genus 212790 0 2585 1 Sulfurihydrogenibium 1256 Sulfurihydrogenibium azorense 1 309806 0 species 1302 1 0 2619248 no rank Sulfurihydrogenibium sp. YO3AOP1 1302 species 436114 0 1 3 genus 182899 0 2 Persephonella 1 691 688 Persephonella marina 1 309805 0 species Desulfurobacteriales 1 1230 4 order 1485951 0 6 1226 1 Desulfurobacteriaceae 5 10 family 0 558314 64159 0 3 genus 2 Desulfurobacterium 1 1061 1 species 64160 0 1058 Desulfurobacterium thermolithotrophum Thermovibrio 1 155 genus 3 171868 0 2 Thermovibrio ammonificans 152 0 228745 species 1 1546908 1 Proteobacteria 2058 phylum 315 0 1224 580370 0 class 4 6 Zetaproteobacteria 524 1 Mariprofundales 1 520 order 7 580371 0 5 Mariprofundaceae 513 1 1 family 0 580372 4 512 1 Mariprofundus 3 0 377315 17 genus 1 species 1921086 0 246 Mariprofundus aestuarium 0 1921087 species 1 Mariprofundus ferrinatatus 249 1 3687 Oligoflexia 11 class 10 0 1553900 Bacteriovoracales 1 2085 0 2024979 order 3 5 1418 2 family 1652132 0 1 1418 Halobacteriovorax 2 0 1652133 genus 4 Halobacteriovorax marinus 1414 97084 0 species 1 family 0 263369 2 664 664 1 Bacteriovorax 2 genus 4 0 146784 0 960 species 1 Bacteriovorax stolpii 660 1592 1 Bdellovibrionales 5 6 order 0 213481 213483 0 family 4 4 Bdellovibrionaceae 1 1586 958 0 10 genus 3 Bdellovibrio 1 1582 1115 Bdellovibrio bacteriovorus 1 species 959 0 0 453816 species 1 Bdellovibrio exovorus 457 6 0 1807140 class 1219 6 0 225057 40 order 1219 1 Acidithiobacillales 5 225058 0 family 22 1179 1 Acidithiobacillaceae Acidithiobacillus 1157 1 119977 0 genus 33 4 344 Acidithiobacillus ferrooxidans 1 species 920 0 1 species 33059 0 381 Acidithiobacillus caldus 399 Acidithiobacillus ferrivorans 1 species 0 160808 Alphaproteobacteria 1 489803 class 427 0 28211 571 0 2800060 order 6 2147 Hyphomonadaceae 2147 1 69657 0 30 family 6 2 2723 0 genus 19 1 1177 Hirschia Hirschia baltica 1158 2724 0 species 1 85 0 26 genus 3 Hyphomonas 940 1 species 0 81032 1 Hyphomonas neptunium 348 1 no rank 0 2630699 566 Hyphomonas sp. Mor2 566 1906738 0 species 1 4 order 23 255473 0 1 839 Parvularculales 3 0 255474 family 11 816 1 Parvularculaceae 0 208215 genus 12 2 Parvularcula 1 805 793 Parvularcula bermudensis 1 208216 0 species Caulobacterales 6875 1 204458 0 order 43 20 76892 0 113 family 19 Caulobacteraceae 6832 1 Asticcacaulis 1 397 genus 12 0 76890 2 0 78587 species 1 Asticcacaulis excentricus 385 1 no rank 0 81440 356 356 Caulobacteraceae bacterium OTSz_A_272 1 0 1759059 species 6 74 genus 0 75 2874 1 Caulobacter 1 155892 0 species 870 Caulobacter vibrioides 69666 0 species 1 Caulobacter mirabilis 471 Caulobacter segnis 445 88688 0 species 1 Caulobacter henricii 441 species 0 69395 1 573 1 no rank 2648921 0 573 Caulobacter sp. K31 1 species 0 366602 7 41275 0 genus 102 1 2448 Brevundimonas 1215 0 2622653 no rank 3 Brevundimonas sp. GW460-12-10-14-LB2 266 species 1827469 0 1 606 Brevundimonas sp. LM2 1 0 1938605 species species 0 1532555 1 Brevundimonas sp. DS20 343 Brevundimonas vesicularis 344 species 0 41276 1 355 Brevundimonas naejangsanensis 1 588932 0 species 432 Brevundimonas subvibrioides 1 0 74313 species 1 644 Phenylobacterium 2 genus 18 20 0 626 Phenylobacterium zucineum 1 0 284016 species 3 0 1191478 7 order 453 1 Magnetococcales 446 1 Magnetococcaceae 2 family 2 1191479 0 genus 0 162171 1 444 1 0 1124597 species 444 Magnetococcus marinus order 51 766 0 56 Rickettsiales 1 37478 1 15128 Rickettsiaceae 28 22 family 0 775 1 1111 Candidatus Phycorickettsia 2 0 2115980 genus 3 1 species 2115978 0 1108 Candidatus Phycorickettsia trachydisci 33988 0 tribe 25 13995 1 2234 Orientia 2 69474 0 1 genus 0 784 species 1 Orientia tsutsugamushi 2233 1 11761 Rickettsia 23 genus 1013 780 0 no rank 0 114295 1 1262 1262 Rickettsia endosymbiont of Bemisia tabaci 1 337479 0 species 2825 2 114292 0 species group Rickettsia prowazekii 1432 species 0 782 1 0 785 species 1 Rickettsia typhi 1393 4221 species group 114277 0 17 1 species 33992 0 198 Rickettsia rhipicephali species 109232 0 1 Rickettsia monacensis 508 1 0 786 species 553 Rickettsia akari 1 species 787 0 760 Rickettsia australis 96 Rickettsia philipii 1 1105106 0 species Rickettsia amblyommatis 241 33989 0 species 1 64 Rickettsia africae 1 species 0 35788 species 0 33991 1 Rickettsia montanensis 104 1 species 0 35791 163 Rickettsia massiliae Rickettsia parkeri 73 species 0 35792 1 0 781 species 1 Rickettsia conorii 90 1 species 0 783 132 Rickettsia rickettsii Rickettsia japonica 91 0 35790 species 1 Rickettsia slovaca 47 0 35794 species 1 623 Rickettsia felis 1 42862 0 species 383 Rickettsia peacockii 1 species 47589 0 1 species 0 226665 95 Rickettsia heilongjiangensis 2 0 1129742 species group 2440 992 Rickettsia canadensis 1 788 0 species 1448 Rickettsia bellii 1 species 33990 0 0 1699067 no rank 1 2555 Rickettsiales bacterium Ac37b 2555 0 1528098 species 1 942 0 35 family 23 Anaplasmataceae 18655 1 Neorickettsia 1 1475 12 genus 33993 0 4 species 0 33994 1 Neorickettsia helminthoeca 470 1 950 0 species 515 Neorickettsia risticii 1 species 0 951 478 Neorickettsia sennetsu 6 943 0 genus 65 1 8182 Ehrlichia 4 106178 0 species group 6657 1933 Ehrlichia ruminantium 1 species 0 779 945 0 species 1 Ehrlichia chaffeensis 1534 species 0 944 1 Ehrlichia canis 1773 Ehrlichia muris 1417 species 0 35795 1 1460 1 0 106181 no rank 0 391036 species 1 Ehrlichia sp. HF 1460 4 0 768 12 genus 1 871 Anaplasma 243 Anaplasma centrale 1 species 0 769 220 Anaplasma marginale 1 0 770 species 396 species group 0 106179 1 396 Anaplasma phagocytophilum 1 0 948 species 8 0 952 tribe 8092 genus 175 953 0 8 Wolbachia 8092 1 7917 no rank 0 2640676 7 872 Wolbachia endosymbiont of Onchocerca volvulus 1 species 77551 0 1 100901 0 species 895 Wolbachia endosymbiont of Onchocerca ochengi 963 Wolbachia endosymbiont of Brugia malayi 1 80849 0 species 1 0 66084 species 1033 Wolbachia sp. wRi 2213 Wolbachia endosymbiont of Drosophila simulans 1 species 0 77038 Wolbachia endosymbiont of Drosophila melanogaster 1063 species 0 163164 1 1 species 246273 0 878 Wolbachia endosymbiont of Cimex lectularius 1 1089 Candidatus Midichloriaceae 3 6 family 0 1328881 Candidatus Midichloria 1083 1 411566 0 17 genus 2 Candidatus Midichloria mitochondrii 1066 234827 0 species 1 0 204441 order 205 65 Rhodospirillales 1 30402 Acetobacteraceae 11010 1 0 433 102 family 33 Roseomonas 1 1471 125216 0 genus 25 3 694 Roseomonas gilardii 1 species 0 257708 752 1 0 2617492 no rank 2018065 0 species 1 Roseomonas sp. FDAARGOS_362 752 0 153497 1 genus 2 Kozakia 318 1 317 Kozakia baliensis 1 species 0 153496 231 genus 0 1602345 1 231 Parasaccharibacter apium 1 0 1510841 species Acetobacter 3724 1 434 0 32 genus 8 Acetobacter persici 367 0 1076596 species 1 0 104102 species 1 Acetobacter tropicalis 605 1 0 65959 species 296 Acetobacter pomorum Acetobacter oryzifermentans 350 species 1633874 0 1 1 0 151157 subgenus 244 1 0 435 species 244 Acetobacter aceti 1480 Acetobacter pasteurianus 1 438 0 species 1 0 446692 species 350 Acetobacter senegalensis 2 0 364409 6 genus 1 761 Granulibacter species 364410 0 1 Granulibacter bethesdensis 755 3 genus 9 0 441 679 1 Gluconobacter 1 0 442 species 468 Gluconobacter oxydans 202 Gluconobacter albidus 1 species 0 318683 279 genus 0 91914 1 Asaia bogorensis 279 0 91915 species 1 36 genus 1434011 0 5 Komagataeibacter 1 1695 1 0 1177712 species 360 Komagataeibacter medellinensis 1 265960 0 species 450 Komagataeibacter nataicola 1 species 0 28448 583 Komagataeibacter xylinus Komagataeibacter europaeus 266 species 0 33995 1 2 89583 0 3 genus 1 433 Gluconacetobacter Gluconacetobacter diazotrophicus 430 species 33996 0 1 0 522 genus 17 3 Acidiphilium 1 1068 Acidiphilium cryptum 500 species 0 524 1 species 0 62140 1 Acidiphilium multivorum 551 3 genus 0 320496 2 Neoasaia 249 1 Neoasaia chiangmaiensis 246 0 320497 species 1 Rhodospirillaceae 19187 1 family 223 0 41295 31 Tistrella 978 1 genus 17 0 171436 2 Tistrella mobilis 961 species 0 171437 1 Niveispirillum 1 609 12 genus 0 1543704 2 1 1612173 0 species 597 Niveispirillum cyanobacteriorum 1612157 0 2 genus 2 Pararhodospirillum 558 1 Pararhodospirillum photometricum 556 species 1084 0 1 genus 3 0 1263978 2 Candidatus Endolissoclinum 3239 1 species 1263979 0 1 Candidatus Endolissoclinum faulkneri 3236 5 158 genus 13134 0 1 3518 Magnetospirillum Magnetospirillum magneticum 817 species 0 84159 1 1 55518 0 species 878 Magnetospirillum gryphiswaldense 1665 2 2617991 0 no rank species 1639348 0 1 Magnetospirillum sp. ME-1 885 species 1663591 0 1 Magnetospirillum sp. XM-1 780 1 888 Nitrospirillum 2 5 genus 0 1543705 883 Nitrospirillum amazonense 1 28077 0 species 3 genus 1804663 0 2 Haematospirillum 475 1 species 0 1549855 1 Haematospirillum jordaniae 472 4998 1 Azospirillum 5 genus 151 191 0 1527 Azospirillum brasilense 1 0 192 species Azospirillum thiophilum 1031 species 0 528244 1 Azospirillum lipoferum 1744 193 0 species 1 Azospirillum humicireducens 545 species 1226968 0 1 1610 1 Thalassospira 3 genus 20 168934 0 species 0 2048283 1 Thalassospira sp. CSC3H3 769 1 220697 0 species 821 Thalassospira xiamenensis 1 1456 Rhodospirillum 3 0 1081 11 genus 1 0 34018 species 778 Rhodospirillum centenum 1085 0 species 1 Rhodospirillum rubrum 667 1 635 Magnetospira 2 1182780 0 genus 7 1 2685734 0 no rank 628 1 1288970 0 species 628 Magnetospira sp. QH-2 1 38380 Rhodobacterales 94 144 order 204455 0 31989 0 574 family 93 Rhodobacteraceae 1 38236 412 1 0 1649279 genus Ruegeria mobilis 412 0 379347 species 1 Ketogulonicigenium 1 733 21 genus 0 92944 3 Ketogulonicigenium vulgare 370 species 0 92945 1 species 0 92947 1 Ketogulonicigenium robustum 342 3 97050 0 genus 14 1311 1 Ruegeria 1 no rank 2625375 0 464 Ruegeria sp. TM1040 464 292414 0 species 1 Ruegeria pomeroyi 833 species 0 89184 1 2 1609958 0 1 genus 1 658 Confluentimicrobium 657 1 0 2643318 no rank Confluentimicrobium sp. EMB200-NS6 657 1609966 0 species 1 1060 0 genus 29 5 Rhodobacter 3038 1 1351 Rhodobacter sphaeroides 1 species 1063 0 2 no rank 0 196779 1151 species 1850250 0 1 Rhodobacter sp. LPB0142 569 Rhodobacter sp. CZR27 582 2033869 0 species 1 1 0 1061 species 507 Rhodobacter capsulatus 615 1 genus 2211641 0 Loktanella vestfoldensis 615 0 245188 species 1 4 0 34008 genus 33 1 2147 Rhodovulum 2 2631432 0 no rank 1148 1 species 0 308754 591 Rhodovulum sp. MB263 Rhodovulum sp. P5 557 0 1564506 species 1 966 Rhodovulum sulfidophilum 1 species 35806 0 Roseovarius 1 520 4 genus 0 74030 2 516 Roseovarius mucosus 1 species 215743 0 3 genus 13 2433 0 1106 1 Roseobacter 1 0 2434 species 507 Roseobacter denitrificans species 42443 0 1 Roseobacter litoralis 586 409 1 Thioclava 2 0 285107 2 genus 1 0 1915078 species 407 Thioclava nitratireducens 1 0 436357 genus 2 Thalassococcus 1260 genus 263377 0 2 624 1 0 2640570 no rank 1 0 1792508 species 624 Yangia sp. CCB-MM3 636 Thiobacimonas profunda 1 1229727 0 species 1 1548 Octadecabacter 4 21 genus 0 53945 1 species 1217908 0 643 Octadecabacter antarcticus Octadecabacter temperatus 381 1458307 0 species 1 503 Octadecabacter arcticus 1 species 0 53946 8 genus 0 188905 2 Jannaschia 535 1 527 no rank 0 2645469 1 Jannaschia sp. CCS1 527 290400 0 species 1 1 genus 0 245186 5 Loktanella 1 638 Sagittula 2 8 genus 0 58842 630 0 2624628 no rank 1 Sagittula sp. P11 630 species 0 2009329 1 800 2 no rank 0 58840 species 0 2033435 1 Rhodobacteraceae bacterium QY30 417 1 species 0 1904441 383 Rhodobacteraceae bacterium 651 1 Leisingera 2 191028 0 4 genus 1 species 133924 0 647 Leisingera methylohalidivorans 1097466 0 8 genus 2 Defluviimonas 1 601 593 Defluviimonas alba 1 species 0 1335048 875170 0 genus 16 5 Celeribacter 2453 1 species 0 1208324 1 Celeribacter indicus 766 1 0 1758178 species 433 Celeribacter ethanolicus 1 0 1397108 species 475 Celeribacter marinus 763 Celeribacter manganoxidans 1 0 1411902 species 1 552 Halocynthiibacter 2 genus 4 0 1579315 1 1579316 0 species 548 Halocynthiibacter arcticus 1 355 Marivivens 2 0 1759396 genus 2 353 no rank 0 2622455 1 0 1920883 species 1 Marivivens sp. JLT3646 353 Planktomarina 781 1 genus 1 1284657 0 2 species 1284658 0 1 Planktomarina temperata 780 Dinoroseobacter 1 518 0 309512 genus 3 2 species 0 215813 1 Dinoroseobacter shibae 515 Roseibacterium 584 1 5 genus 159345 0 2 1 species 0 159346 579 Roseibacterium elongatum Rhodobaca 488 1 0 119541 genus 2 2 486 Rhodobaca barguzinensis 1 species 441209 0 5 genus 0 367771 2 Marinovum 814 1 809 Marinovum algicola 1 species 42444 0 2 227873 0 genus 10 1 536 Pannonibacter 1 121719 0 species 526 Pannonibacter phragmitetus Tateyamaria 1 545 299261 0 genus 1 2 Tateyamaria omphalii 544 species 0 299262 1 2 4 genus 0 360528 817 1 Pelagibaca 813 Pelagibaca abyssi 1 0 1250539 species 554 1 Antarctobacter 2 74032 0 3 genus Antarctobacter heliothermus 551 74033 0 species 1 4360 1 Paracoccus 9 79 genus 265 0 species 34004 0 1 Paracoccus aminovorans 535 no rank 0 246570 1 554 Paracoccus sp. BM15 554 species 1529068 0 1 147645 0 species 1 Paracoccus yeei 666 Paracoccus zhejiangensis 525 1077935 0 species 1 species 0 266 1 Paracoccus denitrificans 581 species 0 34003 1 Paracoccus aminophilus 457 1945662 0 species 1 Paracoccus contaminans 420 Paracoccus sp. CBA4604 543 2065379 0 species 1 4 478070 0 59 genus 1829 1 Labrenzia 0 187304 species 1 Labrenzia aggregata 605 no rank 0 2648686 2 1165 Labrenzia sp. VG12 627 0 2021862 species 1 538 Labrenzia sp. CP4 1 1674922 0 species Phaeobacter 4270 1 genus 60 0 302485 5 1041 Phaeobacter gallaeciensis 1 0 60890 species 952 Phaeobacter piscinae 1 1580596 0 species Phaeobacter porticola 438 0 1844006 species 1 1 0 221822 species 1779 Phaeobacter inhibens 3 11 genus 60136 0 1217 1 Sulfitobacter 582 Sulfitobacter pseudonitzschiae 1 0 1402135 species 624 1 0 196795 no rank Sulfitobacter sp. AM1-D1 624 species 0 1917485 1 9 54526 0 order 34 1 224525 Pelagibacterales Pelagibacteraceae 1 207542 family 86 1655514 0 6 113709 1655516 0 no rank 2 alpha proteobacterium HIMB5 102565 species 0 859653 1 species 744985 0 1 alpha proteobacterium HIMB59 11144 Candidatus Pelagibacter 1 93747 genus 34 0 198251 3 78575 Candidatus Pelagibacter ubique 1 0 198252 species 15138 0 2647897 no rank 1 1002672 0 species 1 Candidatus Pelagibacter sp. IMCC9063 15138 Candidatus Fonsibacter 16949 1 0 2045213 32 genus 2 1925548 0 species 1 Candidatus Fonsibacter ubiquis 16917 Sphingomonadales 1 31610 178 order 0 204457 82 6603 1 Erythrobacteraceae 22 108 family 0 335929 4 361177 0 genus 99 890 1 Altererythrobacter species 1267766 0 1 Altererythrobacter atlanticus 253 1 0 476157 species 266 Altererythrobacter ishigakiensis species 0 361183 1 Altererythrobacter epoxidivorans 272 0 2800686 genus 2 506 266 Altererythrobacter mangrovi 1 species 0 1982042 Altererythrobacter dongtanensis 240 0 692370 species 1 1232 2 genus 0 2800681 640 Erythrobacter atlanticus 1 1648404 0 species Erythrobacter gangjinensis 592 502682 0 species 1 3 20 genus 1295327 0 709 1 Croceicoccus 251 Croceicoccus naphthovorans 1 0 1348774 species species 0 450378 1 Croceicoccus marinus 438 no rank 2800788 0 6 1879 3 104 genus 1041 0 1068 1 Erythrobacter species 39960 0 1 Erythrobacter litoralis 647 Porphyrobacter neustonensis 317 0 1112 species 1 genus 48 0 1111 3 Porphyrobacter 811 1 763 2 no rank 0 2683265 415 Porphyrobacter sp. LM 6 1 0 1896196 species 348 Porphyrobacter HT-58-2 1 species 0 2023229 2800682 0 genus 1 511 Altererythrobacter namhicola 511 species 645517 0 1 0 1855416 genus 2 531 266951 0 species 1 Erythrobacter seohaensis 251 1 0 192812 species 280 Erythrobacter flavus 237 genus 0 2800685 1 Altererythrobacter marensis 237 543877 0 species 1 24829 1 Sphingomonadaceae 59 0 41297 243 family 1 0 2709685 genus 392 1 species 266812 0 392 Sphingorhabdus flavimaris 15 0 165695 genus 205 1 5189 Sphingobium 351 Sphingobium chlorophenolicum 1 46429 0 species 2075 6 no rank 0 2611147 1 1855519 0 species 247 Sphingobium sp. EP60837 1 627192 0 species 388 Sphingobium sp. SYK-6 0 407020 species 1 Sphingobium sp. MI1205 324 364 Sphingobium sp. YBL2 1 0 484429 species 1315974 0 species 1 Sphingobium sp. TKS 404 1 species 1843368 0 348 Sphingobium sp. RAC03 species 0 1332080 1 Sphingobium baderi 302 654 Sphingobium yanoikuyae 1 13690 0 species 301 Sphingobium hydrophobicum 1 0 1673076 species Sphingobium herbicidovorans 264 0 76947 species 1 1 332056 0 species 356 Sphingobium japonicum 0 332055 species 1 Sphingobium indicum 345 336 Sphingobium cloacae 1 120107 0 species Zymomonas 1125 1 genus 3 0 541 2 1 species 0 542 1122 Zymomonas mobilis 5 genus 40 165696 0 1 1696 Novosphingobium species 205844 0 1 Novosphingobium pentaromativorans 441 Novosphingobium aromaticivorans 346 48935 0 species 1 0 158500 species 1 Novosphingobium resinovorum 470 399 0 2644732 no rank 1 Novosphingobium sp. PP1Y 399 0 702113 species 1 Sphingopyxis 1 4354 101 genus 165697 0 10 33050 0 species 1 Sphingopyxis macrogoltabida 735 species 267128 0 1 Sphingopyxis granuli 447 4 no rank 0 2614943 2001 Sphingopyxis sp. 113P3 352 0 292913 species 1 Sphingopyxis sp. LPB0140 747 1913578 0 species 1 Sphingopyxis sp. MG 426 0 1866325 species 1 Sphingopyxis sp. QXT-31 476 0 1357916 species 1 1515612 0 species 1 Sphingopyxis fribergensis 359 Sphingopyxis alaskensis 314 species 0 117207 1 1 0 33052 species 397 Sphingopyxis terrae Citromicrobium 289 1 9 genus 72173 0 2 280 1 no rank 0 2630544 280 Citromicrobium sp. JL477 1 species 1634516 0 Sphingomonas 1 9183 167 genus 13687 0 15 705 Sphingomonas sanxanigenens 1 397260 0 species Sphingomonas melonis 483 152682 0 species 1 Sphingomonas hengshuiensis 443 0 1609977 species 1 Sphingomonas koreensis 402 0 93064 species 1 2 0 160791 726 species 1 1450 Sphingomonas wittichii 1 1283312 0 strain 724 Sphingomonas sp. DC-6 465 Sphingomonas taxi 1 species 1549858 0 1 0 1560345 species 431 Sphingomonas panacis 4637 no rank 0 196159 6 Sphingomonas sp. LK11 2591 species 0 1390395 1 Sphingomonas sp. LM7 375 1938607 0 species 1 432 Sphingomonas sp. MM-1 1 species 745310 0 422 Sphingomonas sp. NIC1 1 1961362 0 species Sphingomonas sp. Cra20 424 species 1327635 0 1 1 0 1030157 species 393 Sphingomonas sp. KC8 0 1649486 4 genus 2 Rhizorhabdus 1 474 1 species 1850238 0 470 Rhizorhabdus dicambivorans 446 1 0 2685927 genus 1 1921510 0 species 446 Sphingomonas sp. JJ-A5 Blastomonas 471 1 0 150203 genus 3 2 1 no rank 2626550 0 468 species 0 1842535 1 Blastomonas sp. RAC04 468 1 967 Sphingorhabdus 3 0 1434046 27 genus 940 2 no rank 0 2614947 490 Sphingorhabdus sp. M41 1 species 0 1806885 450 Sphingorhabdus sp. YGSMI21 1 2077182 0 species 212 0 356 order 640 1 107701 Rhizobiales Beijerinckiaceae 1056 1 45404 0 family 4 5 1 426 Methylocella 2 11 genus 120652 0 1 species 0 199596 415 Methylocella silvestris Beijerinckia 1 626 532 0 14 genus 2 Beijerinckia indica 612 533 0 species 1 26 family 0 772 18 Bartonellaceae 1 22885 genus 498 0 773 17 Bartonella 1 22859 1 species 388640 0 756 Bartonella australis Bartonella apis 1086 1686310 0 species 1 Bartonella henselae 1246 species 38323 0 1 species 803 0 1 Bartonella quintana 1069 Bartonella grahamii 1403 species 0 33045 1 1 1318743 0 species 1279 Bartonella ancashensis Bartonella clarridgeiae 1473 species 56426 0 1 species 33047 0 1 Bartonella vinsonii 1324 1 85701 0 species 1381 Bartonella tribocorum 6 2645622 0 no rank 9944 1663 Bartonella sp. JB15 1 1933906 0 species 1762 Bartonella sp. Raccoon60 1 species 1933912 0 1765 Bartonella sp. A1379B 1 species 1933910 0 species 0 515256 1 Bartonella sp. 1-1C 1610 1481 Bartonella sp. WD16.2 1 species 1933904 0 Bartonella sp. JB63 1663 species 1933907 0 1 1 0 774 species 1400 Bartonella bacilliformis 6 no rank 0 119042 1742 0 1484898 17 genus 2 Methyloceanibacter 1 514 1384459 0 species 1 Methyloceanibacter caenitepidi 497 1734920 0 genus 14 2 Pseudorhodoplanes 1 529 1235591 0 species 1 Pseudorhodoplanes sinuspersici 515 genus 28 1572860 0 2 Hartmannibacter 699 1 1 0 1482074 species 671 Hartmannibacter diazotrophicus 41294 0 113 family 26 Bradyrhizobiaceae 1 16447 2 genus 33 0 1073 1 3638 Rhodopseudomonas species 0 1076 1 Rhodopseudomonas palustris 3605 1 803 Nitrobacter 3 911 0 14 genus species 913 0 1 Nitrobacter winogradskyi 350 Nitrobacter hamburgensis 439 0 912 species 1 Variibacter 484 1 genus 8 1649510 0 2 1 0 1333996 species 476 Variibacter gotjawalensis Bradyrhizobium 1 8267 0 374 genus 241 11 1274631 0 species 1 Bradyrhizobium icense 666 Bradyrhizobium japonicum 1119 species 0 375 1 4256 0 2631580 no rank 6 1 species 288000 0 669 Bradyrhizobium sp. BTAi1 690 Bradyrhizobium sp. 1 species 376 0 1 species 115808 0 649 Bradyrhizobium sp. ORS 285 Bradyrhizobium sp. CCGE-LA001 668 species 0 1223566 1 838 Bradyrhizobium sp. ORS 278 1 114615 0 species species 0 2057741 1 Bradyrhizobium sp. SK17 742 717 Bradyrhizobium oligotrophicum 1 species 0 44255 1268 Bradyrhizobium diazoefficiens 1 species 0 1355477 0 40136 6 genus 2 Oligotropha 480 1 40137 0 species 1 Oligotropha carboxidovorans 474 Bosea 2662 1 genus 65 85413 0 5 1526658 0 species 1 Bosea vaviloviae 762 1835 0 2653178 no rank 3 651 Bosea sp. AS-1 1 species 2015316 0 species 0 1842539 1 Bosea sp. RAC05 701 483 Bosea sp. PAMC 26642 1 0 1792307 species 1 28520 Rhizobiaceae 55 149 family 82115 0 0 227292 no rank 10 6025 0 28105 genus 82 7 Sinorhizobium 1 5084 1 species 382 0 1340 Sinorhizobium meliloti no rank 0 2613772 2 1069 496 Sinorhizobium sp. CCBAU 05631 1 794846 0 species 0 1842534 species 1 Sinorhizobium sp. RAC02 573 559 Sinorhizobium americanum 1 species 194963 0 1 0 663276 species group 1549 Sinorhizobium fredii 1549 380 0 species 1 Sinorhizobium medicae 485 110321 0 species 1 Ensifer 941 1 17 genus 0 106591 3 497 Ensifer adhaerens 1 species 106592 0 427 Ensifer sojae 1 species 0 716925 15623 36 0 227290 no rank 7 62 genus 357 0 4262 1 Agrobacterium 406 Agrobacterium vitis 1 0 373 species 1 species 359 0 355 Agrobacterium rhizogenes 2 species group 0 1183400 2536 1 species 358 0 2143 Agrobacterium tumefaciens 393 Agrobacterium fabrum 1 1176649 0 species 903 no rank 0 2632611 2 0 1842536 species 1 Agrobacterium sp. RAC06 536 0 861208 species 1 Agrobacterium sp. H13-3 367 genus 7 1525371 0 2 Neorhizobium 678 1 671 Neorhizobium galegae 1 0 399 species 10683 1 Rhizobium 27 genus 655 379 0 Rhizobium etli 1292 0 29449 species 1 570 Rhizobium gallicum 1 species 0 56730 998 Rhizobium phaseoli 1 0 396 species 4268 21 no rank 0 2613769 Rhizobium sp. IRBG74 355 species 424182 0 1 1 species 1703967 0 5 Rhizobium sp. N741 1 species 2020311 0 304 Rhizobium sp. Kim5 1 1703965 0 species 1 Rhizobium sp. N6212 Rhizobium sp. NXC14 234 0 1981173 species 1 species 0 1571470 1 Rhizobium sp. ACO-34A 399 Rhizobium sp. N324 372 1703969 0 species 1 2020313 0 species 1 Rhizobium sp. TAL182 104 Rhizobium sp. N1314 83 0 1703961 species 1 1 1703968 0 species 6 Rhizobium sp. N871 1125847 0 species 1 Rhizobium sp. NT-26 354 1 0 1869170 species 324 Rhizobium sp. S41 1 species 2028343 0 375 Rhizobium sp. 10195 2 Rhizobium sp. N113 1 species 0 1703960 Rhizobium sp. N1341 3 0 1703962 species 1 Rhizobium sp. N621 1 0 1703964 species 1 83 Rhizobium sp. N731 1 species 1703966 0 1 species 2048897 0 388 Rhizobium sp. NXC24 297 Rhizobium sp. CIAT894 1 2020312 0 species 302 Rhizobium sp. IE4771 1 1301032 0 species 1914541 0 species 1 Rhizobium sp. Y9 276 0 384 species 1 Rhizobium leguminosarum 2515 1 species 0 398 385 Rhizobium tropici 2 0 323620 genus 17 761 1 Shinella 744 1 0 2643062 no rank 1 0 879274 species 744 Shinella sp. HZN7 genus 156 34019 0 6 Liberibacter 5962 1 556287 0 species 1 Candidatus Liberibacter solanacearum 1069 940 Candidatus Liberibacter asiaticus 1 0 34021 species Candidatus Liberibacter africanus 974 34020 0 species 1 1434 Liberibacter crescens 1 0 1273132 species 1389 Candidatus Liberibacter americanus 1 species 309868 0 20 0 118882 family 8 3846 1 Brucellaceae 528 0 23 genus 5 Ochrobactrum 1 2400 1 species 419475 0 608 Ochrobactrum pseudogrignonense 1 species 0 571256 830 Ochrobactrum pituitosum Ochrobactrum sp. A44 522 271865 0 species 1 1 species 529 0 417 Ochrobactrum anthropi 1 1438 Brucella 14 genus 461 234 0 species 0 236 1 Brucella ovis 21 1 species 29461 0 130 Brucella suis 24 Brucella microti 1 0 444163 species species 0 120577 1 Brucella ceti 74 Brucella canis 89 36855 0 species 1 1 0 981386 species 103 Brucella vulpis 350 no rank 0 2632610 4 1891098 0 species 1 Brucella sp. 2002734562 34 117 Brucella sp. 09RB8471 1 0 1149952 species 1885919 0 species 1 Brucella sp. 141012304 89 110 Brucella sp. 09RB8910 1 0 1844051 species 75 Brucella pinnipedialis 1 0 120576 species 1 29459 0 species 51 Brucella melitensis Brucella abortus 60 species 235 0 1 23 family 0 335928 7 Xanthobacteraceae 1 2039 Xanthobacter 779 1 279 0 genus 10 2 1 280 0 species 769 Xanthobacter autotrophicus 1 619 Azorhizobium 2 genus 8 0 6 1 0 7 species 611 Azorhizobium caulinodans 618 1 Starkeya 2 0 152053 genus 15 Starkeya novella 603 0 921 species 1 0 31993 family 4 6 Methylocystaceae 1427 1 1 865 Methylocystis 3 133 0 genus 44 no rank 2625913 0 1 392 1 0 187303 species 392 Methylocystis sp. SC2 1 species 655015 0 429 Methylocystis bryophila Methylosinus 558 1 11 genus 425 0 2 1 species 0 426 547 Methylosinus trichosporium 9814 1 Methylobacteriaceae 15 family 20 119045 0 genus 199 407 0 9 Methylobacterium 5249 1 species 0 31998 1 Methylobacterium radiotolerans 610 270351 0 species 1 Methylobacterium aquaticum 743 0 2615210 no rank 3 1940 873 Methylobacterium sp. 4-46 1 0 426117 species Methylobacterium sp. AMS5 497 925818 0 species 1 0 1479019 species 1 Methylobacterium sp. C1 570 418223 0 species 1 Methylobacterium phyllosphaerae 513 Methylobacterium nodulans 769 0 114616 species 1 0 334852 species 1 Methylobacterium oryzae 475 genus 2282523 0 3 3926 1 0 223967 species 1021 Methylobacterium populi species 29429 0 1 Methylobacterium zatmanii 505 408 0 species 1 Methylobacterium extorquens 2400 619 1 Microvirga 2 14 genus 186650 0 Microvirga ossetica 605 species 0 1882682 1 family 52 69277 0 20 Phyllobacteriaceae 1 8938 Chelativorans 1 371 0 449972 genus 16 2 355 0 2643807 no rank 1 1 0 266779 species 355 Chelativorans sp. BNC1 0 274591 genus 24 2 Hoeflea 1 663 639 1 0 2614931 no rank 1 1620421 0 species 639 Hoeflea sp. IMCC20628 Aminobacter 642 1 11 genus 0 31988 2 83263 0 species 1 Aminobacter aminovorans 631 245876 0 genus 9 2 Nitratireductor 1 605 596 Nitratireductor basaltis 1 472175 0 species 1 531 Phyllobacterium 2 0 28100 genus 6 1 species 1867719 0 525 Phyllobacterium zundukense 6074 1 Mesorhizobium 9 genus 214 68287 0 1 species 381 0 645 Mesorhizobium loti 0 39645 species 1 Mesorhizobium ciceri 959 731 Mesorhizobium opportunistum 1 0 593909 species 1 0 2066070 species 677 Mesorhizobium japonicum 656 Mesorhizobium australicum 1 species 536018 0 674 Mesorhizobium amorphae 1 species 0 71433 0 325217 no rank 1 837 837 Mesorhizobium sp. WSM1497 1 species 278153 0 681 Mesorhizobium sp. B7 1 0 1670800 species Chelatococcaceae 1369 1 0 2036754 family 9 4 1360 1 Chelatococcus 3 0 28209 43 genus 740 1 0 2638111 no rank Chelatococcus sp. CO-6 740 species 1702325 0 1 Chelatococcus daeguensis 577 species 444444 0 1 Hyphomicrobiaceae 1 6091 45401 0 family 62 19 4 55 genus 46913 0 1 1747 Devosia 1692 3 no rank 0 196773 1736675 0 species 1 Devosia sp. A16 691 546 Devosia sp. H5989 1 species 1643450 0 Devosia sp. I507 455 species 0 2083786 1 4 0 81 genus 65 1678 1 Hyphomicrobium Hyphomicrobium nitrativorans 388 1427356 0 species 1 1 53399 0 species 489 Hyphomicrobium denitrificans no rank 0 2619925 1 736 Hyphomicrobium sp. MC1 736 717785 0 species 1 Filomicrobium 481 1 119044 0 genus 9 2 1 1608628 0 species 472 Candidatus Filomicrobium marinum 586 1 Blastochloris 2 0 59282 9 genus species 0 1079 1 Blastochloris viridis 577 1 724 Rhodoplanes 2 29407 0 genus 21 703 1 no rank 2619116 0 703 Rhodoplanes sp. Z2-YC6860 1 species 674703 0 Pelagibacterium 391 1 16 genus 1082930 0 2 1 species 531813 0 375 Pelagibacterium halotolerans 1 422 Rhodomicrobium 2 21 genus 0 1068 0 1069 species 1 Rhodomicrobium vannielii 401 0 255475 6 family 7 Aurantimonadaceae 2169 1 genus 13 414371 0 2 Aureimonas 524 1 511 no rank 2615206 0 1 Aureimonas sp. AU20 511 0 1349819 species 1 1 1639 Martelella 4 293088 0 genus 50 species 0 293089 1 Martelella mediterranea 595 Martelella endophytica 461 species 0 1486262 1 0 2629616 no rank 1 533 Martelella sp. AD-3 533 0 686597 species 1 Rhodobiaceae 1 718 family 2 119043 0 3 2 0 256616 29 genus 716 1 Parvibaculum 256618 0 species 1 Parvibaculum lavamentivorans 687 5107 8 0 82117 no rank Phreatobacter 1 765 1632780 0 17 genus 2 748 Phreatobacter sp. S-12 1 0 1868589 species 0 62654 clade 2 3044 Candidatus Puniceispirillum 3044 1 767891 0 30 genus 2 0 767892 species 1 Candidatus Puniceispirillum marinum 3014 1 695 Polymorphum 2 991903 0 genus 24 Polymorphum gilvum 671 0 991904 species 1 Micavibrio 603 1 0 213485 genus 7 2 Micavibrio aeruginosavorus 596 species 0 349221 1 550 0 2800059 order 2 550 0 2800061 family 2 14 genus 0 74317 2 Maricaulis 1 550 536 Maricaulis maris 1 species 0 74318 9 order 9 1921002 0 3309 1 Holosporales Caedimonadaceae 1 1265 5 family 2100208 0 3 1260 1 Candidatus Nucleicultrix 2 15 genus 1509243 0 1 species 1509244 0 1245 Candidatus Nucleicultrix amoebiphila Holosporaceae 1 1203 44746 0 family 10 2 1193 1 204454 0 no rank 1193 endosymbiont of Acanthamoeba sp. UWC8 1 species 86106 0 1 832 Candidatus Paracaedibacteraceae 3 family 11 0 1777752 1521255 0 genus 9 2 Candidatus Paracaedibacter 1 821 91604 0 species 1 Candidatus Paracaedibacter acanthamoebae 812 353 179 class 0 28216 1 172226 Betaproteobacteria no rank 0 33809 2 911 beta proteobacterium CB 494 543913 0 species 1 1 0 1904640 species 417 Betaproteobacteria bacterium GR16-43 no rank 0 119066 12 7328 327159 0 2 genus 2 Candidatus Accumulibacter 1 411 1 0 327160 species 409 Candidatus Accumulibacter phosphatis 1 5545 Kinetoplastibacterium 6 genus 18 0 33055 Candidatus Kinetoplastibacterium desouzaii 1326 species 994692 0 1 1 species 994695 0 842 Candidatus Kinetoplastibacterium galatii 1 0 33056 species 1314 Candidatus Kinetoplastibacterium crithidii 941 Kinetoplastibacterium blastocrithidii 1 233181 0 species 1104 Candidatus Kinetoplastibacterium oncopeltii 1 994696 0 species Candidatus Profftella 1061 1 0 1381133 2 genus 2 1059 Candidatus Profftella armatura 1 669502 0 species 68 1 genus 0 189384 1 0 189385 species 68 Candidatus Tremblaya princeps 0 1301080 genus 1 243 Candidatus Nasuia deltocephalinicola 243 1160784 0 species 1 1 138933 Burkholderiales 236 1142 order 0 80840 Alcaligenaceae 1 18457 family 85 0 506 44 1 4891 Achromobacter 6 132 genus 222 0 1 0 2626865 no rank 510 510 Achromobacter sp. AONIH1 1 1758194 0 species 1 0 32002 species 984 Achromobacter denitrificans Achromobacter insolitus 416 0 217204 species 1 1 85698 0 species 1934 Achromobacter xylosoxidans species 217203 0 1 Achromobacter spanius 915 2 0 507 5 genus 1443 1 Alcaligenes 1438 Alcaligenes faecalis 1 511 0 species 2 1921582 0 4 genus 1 400 Orrella 396 Orrella dioscoreae 1 species 1851544 0 Pusillimonas 1 372 genus 3 0 305976 2 1 no rank 2640016 0 369 1 1007105 0 species 369 Pusillimonas sp. T7-7 Taylorella 1712 1 1 genus 29574 0 3 Taylorella equigenitalis 1007 0 29575 species 1 1 84590 0 species 704 Taylorella asinigenitalis 751 1 Advenella 3 10 genus 290425 0 438 Advenella mimigardefordensis 1 302406 0 species Advenella kashmirensis 303 310575 0 species 1 Oligella 1 343 1 genus 0 90243 2 1 0 90245 species 342 Oligella urethralis 0 517 156 genus 17 Bordetella 1 7225 Bordetella hinzii 466 species 0 103855 1 1 species 463025 0 456 Bordetella bronchialis species 1416803 0 1 Bordetella genomosp. 9 315 1 1416806 0 species 483 Bordetella genomosp. 8 1 0 521 species 218 Bordetella avium 350 1 no rank 0 2630031 1 species 1697043 0 350 Bordetella sp. H567 1 species 0 123899 336 Bordetella trematum 1 species 463014 0 367 Bordetella flabilis 533 Bordetella pertussis 1 520 0 species 1 species 463024 0 562 Bordetella genomosp. 6 1 species 0 519 514 Bordetella parapertussis 389 Bordetella pseudohinzii 1 species 1331258 0 1 species 94624 0 388 Bordetella petrii 1 species 0 463040 474 Bordetella genomosp. 13 237 Bordetella holmesii 1 species 0 35814 981 Bordetella bronchiseptica 1 0 518 species Basilea 515 1 0 1472344 genus 1 2 1 1472345 0 species 514 Basilea psittacipulmonis genus 3 1100891 0 2 Paenalcaligenes 1 413 Paenalcaligenes hominis 410 0 643674 species 1 Castellaniella 1 307 8 genus 0 359336 2 Castellaniella defragrans 299 75697 0 species 1 17 0 224471 no rank 6196 619 1 Rubrivivax 2 0 28067 15 genus 604 Rubrivivax gelatinosus 1 species 28068 0 Paucibacter 1 728 0 318147 4 genus 2 no rank 0 2642959 1 724 1768242 0 species 1 Paucibacter sp. KCTC 42545 724 Methylibium 491 1 0 316612 10 genus 2 Methylibium petroleiphilum 481 105560 0 species 1 Thiomonas 529 1 0 32012 genus 8 2 Thiomonas intermedia 521 species 926 0 1 Roseateles 1 867 genus 11 93681 0 2 species 0 76731 1 Roseateles depolymerans 856 12 genus 88 0 2 Leptothrix 1 551 34029 0 species 1 Leptothrix cholodnii 539 1 813 Mitsuaria 2 9 genus 0 65047 1 0 2648776 no rank 804 804 Mitsuaria sp. 7 1 1658665 0 species Rhizobacter 1 566 14 genus 0 212743 2 552 Rhizobacter gummiphilus 1 species 946333 0 1032 [Polyangium] brachysporum 1 species 413882 0 59 80864 0 family 181 1 24631 Comamonadaceae 2 352450 0 6 genus 253 1 Simplicispira Simplicispira sp. SC1-8 247 2109915 0 species 1 0 219181 genus 5 3 Ottowia 1 642 243 1 2645081 0 no rank Ottowia sp. oral taxon 894 243 species 1658672 0 1 Ottowia sp. KADR8-3 394 0 2109914 species 1 392 genus 2678886 0 1 392 Melaminivora sp. SC2-7 1 2116657 0 species 12 genus 0 1649468 2 Melaminivora 372 1 1 no rank 0 2641902 360 Melaminivora sp. SC2-9 360 species 2109913 0 1 631 2490452 0 genus 2 Comamonadaceae bacterium A1 302 0 1458425 species 1 Comamonadaceae bacterium B1 329 1458426 0 species 1 Limnohabitans 1 464 genus 4 0 665874 3 0 2626134 no rank 2 460 1 0 1678128 species 235 Limnohabitans sp. 63ED37-2 225 Limnohabitans sp. 103DPR2 1 0 1678129 species 80865 0 genus 31 5 Delftia 1 2728 species 180282 0 1 Delftia tsuruhatensis 693 2 0 2613839 no rank 1402 1 species 742013 0 775 Delftia sp. Cs1-4 species 0 1920191 1 Delftia sp. HK171 627 species 80866 0 1 Delftia acidovorans 602 270 1 Candidatus Symbiobacter 2 1 genus 0 1436289 Candidatus Symbiobacter mobilis 269 1436290 0 species 1 genus 2 0 364316 2 Verminephrobacter 1007 1 1 species 0 364317 1005 Verminephrobacter eiseniae 0 201096 genus 8 2 Alicycliphilus 1 481 Alicycliphilus denitrificans 473 species 179636 0 1 5 genus 48 0 34072 1 5601 Variovorax 664 Variovorax boronicumulans 1 species 436515 0 1471 no rank 0 663243 2 Variovorax sp. PAMC 28711 758 1795631 0 species 1 1 species 2126319 0 713 Variovorax sp. PMC12 3418 Variovorax paradoxus 1 species 34073 0 3108 1 Acidovorax 9 genus 87 12916 0 1533 0 2684926 no rank 4 species 0 232721 1 Acidovorax sp. JS42 291 Acidovorax sp. RAC01 347 species 0 1842533 1 1 species 0 1858609 568 Acidovorax sp. T1 Acidovorax sp. KKS102 327 species 358220 0 1 1 species 0 721785 294 Acidovorax ebreus 1 80867 0 species 521 Acidovorax avenae Acidovorax citrulli 456 species 80869 0 1 species 0 553814 1 Acidovorax sp. NA3 217 1319 1 Hydrogenophaga 4 7 genus 0 47420 1 species 1763535 0 393 Hydrogenophaga crassostreae 919 2 no rank 0 2610897 Hydrogenophaga sp. PBC 480 795665 0 species 1 439 Hydrogenophaga sp. RAC07 1 species 1842537 0 2 174951 0 6 genus 1 904 Ramlibacter 1 species 0 94132 898 Ramlibacter tataouinensis 10 genus 0 283 4 Comamonas 2291 1 1 species 0 285 721 Comamonas testosteroni 625 Comamonas kerstersii 1 species 0 225992 Comamonas serinivorans 935 1082851 0 species 1 5 19 genus 28065 0 1 1600 Rhodoferax species 0 81479 1 Rhodoferax antarcticus 367 Rhodoferax ferrireducens 365 species 192843 0 1 568 Rhodoferax koreense 1 1842727 0 species 281 Rhodoferax saidenbachensis 1 species 1484693 0 Diaphorobacter 363 1 0 238749 genus 2 2 361 Diaphorobacter polyhydroxybutyrativorans 1 1546149 0 species 52972 0 1 genus 3 Polaromonas 2024 1 650 Polaromonas naphthalenivorans 1 species 0 216465 no rank 0 2638319 1 1373 Polaromonas sp. JS666 1373 species 296591 0 1 1 11128 Oxalobacteraceae 29 family 45 75682 0 0 149698 48 genus 6 Massilia 1 2630 Massilia sp. ZMN-3 532 0 2072590 species 1 0 2045208 species 1 Massilia sp. B2 524 no rank 0 2609279 2 981 1 species 0 1707785 528 Massilia sp. WG5 1 species 1678028 0 453 Massilia sp. NR 4-1 species 1141883 0 1 Massilia putida 545 2727 1 Janthinobacterium 7 38 genus 0 29580 1659 4 no rank 0 2610881 1 375286 0 species 288 Janthinobacterium sp. Marseille species 0 1644131 1 Janthinobacterium sp. 1_2014MBL_MicDiv 559 species 1236179 0 1 Janthinobacterium sp. B9-8 391 1 species 1938606 0 421 Janthinobacterium sp. LM6 Janthinobacterium agaricidamnosum 458 species 0 55508 1 Janthinobacterium svalbardensis 572 368607 0 species 1 1 256 Oxalobacter 2 0 846 genus 8 species 847 0 1 Oxalobacter formigenes 248 Herminiimonas 1 503 genus 4 0 303379 3 1 0 204773 species 261 Herminiimonas arsenicoxydans 1809410 0 species 1 Herminiimonas arsenitoxidans 238 6 34 genus 0 963 1 3204 Herbaspirillum 1 0 80842 species 489 Herbaspirillum rubrisubalbicans species 0 964 1 Herbaspirillum seropedicae 789 1 species 0 92645 501 Herbaspirillum frisingense no rank 2624150 0 1 387 2025949 0 species 1 Herbaspirillum sp. meg3 387 1 species 0 341045 1004 Herbaspirillum hiltneri 1763 1 Collimonas 4 31 genus 0 202907 708 Collimonas arenae 1 279058 0 species 279113 0 species 1 Collimonas pratensis 476 158899 0 species 1 Collimonas fungivorans 548 84 family 291 119060 0 1 76770 Burkholderiaceae 8904 1 Cupriavidus 9 106589 0 genus 173 1371 Cupriavidus basilensis 1 species 68895 0 1 0 248026 species 595 Cupriavidus pinatubonensis 0 2640874 no rank 2 2424 1389192 0 species 1 Cupriavidus sp. USMAHM13 1163 Cupriavidus sp. USMAA2-4 1261 0 876364 species 1 887 Cupriavidus necator 1 0 106590 species species 0 119219 1 Cupriavidus metallidurans 1755 Cupriavidus gilardii 661 species 82541 0 1 Cupriavidus sp. USMAA1020 1038 0 367825 species 1 Paraburkholderia 1 8717 132 genus 1822464 0 12 Paraburkholderia phymatum 748 148447 0 species 1 2026199 0 species 1 Paraburkholderia aromaticivorans 641 1 species 252970 0 614 Paraburkholderia phenoliruptrix 1 261302 0 species 1191 Paraburkholderia phytofirmans 1 no rank 0 2615204 778 Paraburkholderia sp. SOS3 778 species 1926494 0 1 948107 0 species 1 Paraburkholderia sprentiae 643 546 Paraburkholderia terrae 1 species 0 311230 0 75105 species 1 Paraburkholderia caribensis 1323 803 Paraburkholderia xenovorans 1 36873 0 species 741 Paraburkholderia hospita 1 0 169430 species Paraburkholderia fungorum 557 134537 0 species 1 41 32008 0 genus 1170 45409 1 Burkholderia Burkholderia glumae 1420 species 337 0 1 0 2613784 no rank 11 6197 Burkholderia sp. KJ006 537 416344 0 species 1 0 758796 species 1 Burkholderia sp. RPE67 820 1795874 0 species 1 Burkholderia sp. PAMC 28687 293 1 0 1468409 species 463 Burkholderia sp. 2002721687 326 Burkholderia sp. PAMC 26561 1 0 1795043 species 588 Burkholderia sp. CCGE1001 1 0 640510 species species 1740163 0 1 Burkholderia sp. Bp7605 463 species 0 1097668 1 Burkholderia sp. YI23 934 Burkholderia sp. HB1 665 1678678 0 species 1 Burkholderia sp. CCGE1003 686 species 640512 0 1 1 species 0 1740162 422 Burkholderia sp. Bp5365 692 Burkholderia plantarii 1 species 0 41899 19303 19 0 87882 species group Burkholderia lata 1769 species 482957 0 1 1 488731 0 species 549 Burkholderia seminalis 1 species 0 292 3129 Burkholderia cepacia Burkholderia diffusa 454 species 0 488732 1 0 101571 species 1 Burkholderia ubonensis 1805 Burkholderia stabilis 829 species 0 95485 1 501 [Pseudomonas] mesoacidophila 1 species 0 265293 Burkholderia vietnamiensis 1266 60552 0 species 1 Burkholderia contaminans 617 species 488447 0 1 Burkholderia cenocepacia 2699 species 95486 0 1 1227 Burkholderia multivorans 1 species 0 87883 species 60550 0 1 Burkholderia pyrrocinia 400 1 species 0 1503054 487 Burkholderia stagnalis 805 Burkholderia ambifaria 1 152480 0 species 1 species 488446 0 911 Burkholderia latens Burkholderia territorii 359 0 1503055 species 1 0 488729 species 1 Burkholderia metallica 446 species 0 152500 1 Burkholderia dolosa 524 species 0 1207504 1 Burkholderia pseudomultivorans 526 7 species group 0 111527 15263 species 0 342113 1 Burkholderia oklahomensis 959 1 species 0 57975 1653 Burkholderia thailandensis 0 13373 species 1 Burkholderia mallei 1402 1 species 28450 0 8592 Burkholderia pseudomallei 1030 Burkholderia sp. MSMB0852 1 1637841 0 species 1 0 1637831 species 818 Burkholderia sp. MSMB617WGS species 0 1637837 1 Burkholderia sp. MSMB0266 809 1 species 28095 0 1364 Burkholderia gladioli 1 1487 Polynucleobacter 4 44013 0 genus 23 458 Polynucleobacter duraquae 1 species 0 1835254 species 576610 0 1 Polynucleobacter necessarius 334 672 Polynucleobacter asymbioticus 1 species 0 576611 1 0 2571159 genus 305 1 412963 0 species 305 Paraburkholderia rhizoxinica 48736 0 47 genus 5 Ralstonia 4644 1 1 species 190721 0 479 Ralstonia insidiosa Ralstonia pickettii 904 0 329 species 1 0 105219 species 1 Ralstonia mannitolilytica 606 305 0 species 1 Ralstonia solanacearum 2608 Pandoraea 6327 1 93217 0 68 genus 10 Pandoraea thiooxydans 383 0 445709 species 1 372 Pandoraea faecigallinarum 1 species 0 656179 Pandoraea oxalativorans 653 573737 0 species 1 362 Pandoraea sputorum 1 93222 0 species 767 Pandoraea pnomenusa 1 species 0 93220 1 species 93219 0 767 Pandoraea norimbergensis 1 0 93221 species 2072 Pandoraea pulmonicola Pandoraea vervacti 434 species 0 656178 1 449 Pandoraea apista 1 species 93218 0 genus 0 1827195 1 686 Burkholderia sp. RPE64 686 758793 0 species 1 609 2 no rank 80841 0 1 0 1834205 species 356 Burkholderiales bacterium YL45 0 1469502 species 1 Burkholderiales bacterium GJ-E10 253 44 order 78 0 32003 1 9969 Nitrosomonadales Thiobacillaceae 335 1 6 family 0 2008790 3 2 0 919 genus 3 329 1 Thiobacillus species 0 36861 1 Thiobacillus denitrificans 326 family 16 206379 0 12 Nitrosomonadaceae 4147 1 4 0 35798 genus 5 1 675 Nitrosospira 0 1288494 species 1 Nitrosospira lacus 254 223 Nitrosospira briensis 1 species 35799 0 1 species 1231 0 193 Nitrosospira multiformis Nitrosomonas 1 3456 914 0 20 genus 7 1342 2 no rank 0 2609265 1 species 261292 0 615 Nitrosomonas sp. Is79A3 Nitrosomonas sp. AL212 727 153948 0 species 1 1 44574 0 species 725 Nitrosomonas communis 617 Nitrosomonas ureae 1 species 0 44577 299 Nitrosomonas europaea 1 0 915 species Nitrosomonas eutropha 453 916 0 species 1 1 680 Sterolibacteriaceae 5 13 family 0 2008793 2 genus 5 0 378210 308 1 Methyloversatilis 303 1 2639971 0 no rank 303 Methyloversatilis sp. RAC08 1 1842540 0 species 2 1054211 0 14 genus 359 1 Sulfuritalea 1 748811 0 species 345 Sulfuritalea hydrogenivorans 1 582 Gallionellaceae 5 14 family 90627 0 291 1 Sideroxydans 2 314343 0 genus 1 species 0 63745 1 Sideroxydans lithotrophicus 290 2 96 0 7 genus 277 1 Gallionella Gallionella capsiferriformans 270 species 370405 0 1 0 32011 27 family 14 Methylophilaceae 3631 1 3 14 genus 0 81682 435 1 Methylovorus 1 species 0 266009 214 Methylovorus glucosotrophus 207 2634027 0 no rank 1 species 887061 0 1 Methylovorus sp. MP688 207 359407 0 11 genus 3 Methylotenera 1 1010 Methylotenera versatilis 624 1055487 0 species 1 375 Methylotenera mobilis 1 species 0 359408 0 404 1 genus 2 Methylobacillus 1 229 228 Methylobacillus flagellatus 1 species 0 405 2 genus 1 0 16 303 1 Methylophilus 0 2630143 no rank 1 302 species 1662285 0 1 Methylophilus sp. TWE2 302 1627 1 Candidatus Methylopumilus 3 8 genus 0 1679002 410 Candidatus Methylopumilus turicensis 1 species 1581680 0 1209 Candidatus Methylopumilus planktonicus 1 0 1581557 species 4 family 0 2772226 516 1 genus 0 1778653 2 Sulfuriferula 239 1 1 no rank 0 2637784 238 238 Sulfuriferula sp. AH1 1 species 1985873 0 Sulfuricella 1 277 genus 2 0 935200 2 1 species 649841 0 275 Sulfuricella denitrificans 22 order 69 206389 0 1 5660 Rhodocyclales Rhodocyclaceae 1 1144 75787 0 17 family 6 0 75788 no rank 1 270 1 species 1898103 0 270 Rhodocyclaceae bacterium 1 378 Azospira 2 146937 0 9 genus Azospira oryzae 369 species 146939 0 1 2 genus 5 0 551759 1 479 Aromatoleum 1 551760 0 species 474 Aromatoleum aromaticum Azonexaceae 381 1 2 family 0 2008795 3 Dechloromonas 379 1 3 genus 0 73029 2 species 0 259537 1 Dechloromonas aromatica 376 0 2008794 family 65 12 Zoogloeaceae 4066 1 1810 1 Azoarcus 5 genus 33 0 12960 403 Azoarcus olearius 1 0 418699 species 1022 2629479 0 no rank 2 561 Azoarcus sp. CIB 1 0 198107 species 1 748247 0 species 461 Azoarcus sp. KH32C 352 Azoarcus sp. SY39 1 0 2067960 species 0 33057 genus 58 6 Thauera 1 2191 396 Thauera aromatica 1 species 59405 0 970 no rank 0 2609274 2 species 85643 0 1 Thauera sp. MZ1T 500 species 2005884 0 1 Thauera sp. K11 470 Thauera chlorobenzoica 399 species 96773 0 1 368 Thauera humireducens 1 0 1134435 species Neisseriales 1 9246 0 206351 98 order 36 22 20 family 481 0 1 5724 Neisseriaceae no rank 421605 0 1 886 Neisseriaceae bacterium DSM 100970 886 species 2052837 0 1 3 59 0 9 genus 1 700 Vitreoscilla 458 1 no rank 2627922 0 458 Vitreoscilla sp. C1 1 96942 0 species 63 0 species 1 Vitreoscilla filiformis 233 2 0 1193515 1 genus 1 589 Snodgrassella Snodgrassella alvi 588 1196083 0 species 1 Neisseria 1 2872 58 genus 482 0 12 1 0 488 species 157 Neisseria mucosa Neisseria sp. 10023 142 0 1853278 species 1 Neisseria lactamica 244 0 486 species 1 Neisseria gonorrhoeae 314 species 0 485 1 252 Neisseria weaveri 1 species 0 28091 0 487 species 1 Neisseria meningitidis 833 1 326523 0 species 230 Neisseria zoodegmatis 321 2 0 2623750 no rank 151 Neisseria sp. 10022 1 species 1853276 0 1 species 0 655307 170 Neisseria sp. KEM232 175 Neisseria elongata 1 species 495 0 490 0 species 1 Neisseria sicca 146 2 2 genus 538 0 1 246 Eikenella Eikenella corrodens 244 0 539 species 1 1 0 71 genus 411 411 Simonsiella muelleri 1 72 0 species 13 0 1499392 43 family 1 3424 Chromobacteriaceae 374 1 Pseudogulbenkiania 2 3 genus 0 568394 no rank 0 2642558 1 371 Pseudogulbenkiania sp. NH8B 371 species 0 748280 1 2 168470 0 genus 6 336 1 Laribacter 330 Laribacter hongkongensis 1 168471 0 species 0 90153 no rank 4 1966 4 535 0 35 genus 1966 1 Chromobacterium 1 no rank 0 2641838 506 Chromobacterium sp. ATCC 53434 506 0 2059672 species 1 0 1108595 species 1 Chromobacterium vaccinii 876 species 0 536 1 Chromobacterium violaceum 549 1 310 Aquaspirillum 2 0 187 genus 2 308 2620219 0 no rank 1 1 0 1938604 species 308 Aquaspirillum sp. LM1 2 885864 0 genus 10 395 1 Jeongeupia 385 1 no rank 0 2619593 385 Jeongeupia sp. USM3 1 species 0 1906741 907 0 1236 class 1086 771494 1 Gammaproteobacteria 2542 1 Orbales 6 2 order 1240482 0 1 2540 Orbaceae 5 1240483 0 family 25 2 4 genus 1193503 0 1 1359 Gilliamella Gilliamella apicola 1355 species 0 1196095 1 1335631 0 genus 3 2 Frischella 1 1156 1267021 0 species 1 Frischella perrara 1153 0 1934945 12 order 4 Immundisolibacterales 1 539 3 1934946 0 family 7 1 527 Immundisolibacteraceae Immundisolibacter 1 520 genus 3 0 1934947 2 517 Immundisolibacter cernigliae 1 species 0 1810504 1 3818 Methylococcales 13 0 135618 12 order 12 0 403 family 24 3806 1 Methylococcaceae Methylomonas 1 2254 78 genus 0 416 5 413 Methylomonas methanica 1 species 0 421 468 1 2608980 0 no rank Methylomonas sp. DH-1 468 species 1727196 0 1 species 1538553 0 1 Methylomonas denitrificans 860 1 species 0 702114 435 Methylomonas koyamae Methylovulum 380 1 0 762296 genus 1 2 1 species 1704499 0 379 Methylovulum psychrotolerans 1 249 Methylococcus 2 8 genus 0 413 241 Methylococcus capsulatus 1 species 414 0 899 1 Methylomicrobium 2 genus 3 0 39773 896 Methylomicrobium alcaliphilum 1 0 271065 species Pasteurellales 15762 1 135625 0 12 order 33 15750 1 Pasteurellaceae 32 0 712 family 104 1 846 Histophilus 2 2 genus 0 214906 Histophilus somni 844 731 0 species 1 4 0 75984 15 genus 1650 1 Mannheimia species 0 75985 1 Mannheimia haemolytica 545 Mannheimia varigena 676 85404 0 species 1 1 0 2645054 no rank 414 414 Mannheimia sp. USDA-ARS-USMARC-1261 1 species 1432056 0 2717 1 Pasteurella 3 745 0 genus 17 1 747 0 species 1983 Pasteurella multocida 717 Pasteurella dagmatis 1 0 754 species Basfia 393 1 697331 0 6 genus 2 0 157673 species 1 [Mannheimia] succiniciproducens 387 1 genus 0 2094023 2 Glaesserella 1 986 1 738 0 species 985 Glaesserella parasuis 724 0 genus 29 6 Haemophilus 1 5340 539 Haemophilus parainfluenzae 1 species 729 0 1 no rank 0 2609962 461 species 0 712310 1 Haemophilus sp. oral taxon 036 461 357 Haemophilus pittmaniae 1 0 249188 species Haemophilus influenzae 2833 727 0 species 1 730 0 species 1 [Haemophilus] ducreyi 1121 1 968 Aggregatibacter 3 8 genus 416916 0 Aggregatibacter aphrophilus 465 0 732 species 1 0 714 species 1 Aggregatibacter actinomycetemcomitans 495 16 genus 713 0 5 Actinobacillus 1 1552 532 Actinobacillus pleuropneumoniae 1 species 0 715 245 Actinobacillus succinogenes 1 0 67854 species 423 Actinobacillus equuli 1 species 0 718 Actinobacillus suis 336 0 716 species 1 Bibersteinia 632 1 476528 0 5 genus 2 Bibersteinia trehalosi 627 species 47735 0 1 2 155493 0 1 genus 1 562 Gallibacterium 1 species 750 0 561 Gallibacterium anatis 2 33811 0 no rank 1016 endosymbiont of unidentified scaly snail isolate Monju 418 species 0 1248727 1 species 0 83406 1 gamma proteobacterium HdN1 598 249 91347 0 order 361 131743 1 Enterobacterales 2 0 451511 no rank 459 2 genus 10 0 702 1 459 Plesiomonas Plesiomonas shigelloides 449 703 0 species 1 1 6875 Pectobacteriaceae 20 0 1903410 family 29 6 35 genus 204037 0 2218 1 Dickeya 907 Dickeya zeae 1 204042 0 species Dickeya dadantii 264 0 204038 species 1 1 0 204039 species 277 Dickeya dianthicola 1 0 1778540 species 261 Dickeya fangzhongdai Dickeya solani 474 species 1089444 0 1 6 122277 0 39 genus 2437 1 Pectobacterium Pectobacterium wasabiae 323 0 55208 species 1 1 species 0 1905730 817 Pectobacterium parmentieri Pectobacterium polaris 230 0 2042057 species 1 781 Pectobacterium carotovorum 1 554 0 species 29471 0 species 1 Pectobacterium atrosepticum 247 5 84565 0 43 genus 1836 1 Sodalis species 0 1239307 1 Sodalis praecaptivus 334 850 Sodalis endosymbiont of Henestaris halophilus 1 species 0 1929246 1 0 63612 species 249 Sodalis glossinidius 1 1486991 0 species 360 Candidatus Sodalis pierantonius 5 genus 71655 0 2 Brenneria 355 1 Brenneria goodwinii 350 0 1109412 species 1 48 family 1903411 0 38 Yersiniaceae 18882 1 Yersinia 1 9789 genus 112 629 0 13 Yersinia aleksiciae 281 0 263819 species 1 353 Yersinia kristensenii 1 species 28152 0 0 631 species 1 Yersinia intermedia 374 485 Yersinia aldovae 1 29483 0 species 1 species 0 29486 459 Yersinia ruckeri 1649845 0 species group 3 4486 species 632 0 1 Yersinia pestis 1255 1085 Yersinia pseudotuberculosis 1 633 0 species 1 species 367190 0 2146 Yersinia similis 380 Yersinia rohdei 1 0 29485 species Yersinia enterocolitica 1551 species 630 0 1 0 2653513 no rank 1 334 species 1839800 0 1 Yersinia sp. FDAARGOS_228 334 Yersinia frederiksenii 974 0 29484 species 1 4 genus 11 34037 0 1 718 Rahnella 1 species 34038 0 186 Rahnella aquatilis 2635087 0 no rank 2 521 1805933 0 species 1 Rouxiella sp. ERMR1:05 331 species 0 741091 1 Rahnella sp. Y9602 190 244 1 genus 0 929812 Gibbsiella quercinecans 244 species 929813 0 1 Chania 242 1 3 genus 1745211 0 2 species 1639108 0 1 Chania multitudinisentens 239 1 genus 0 1565532 3 Rouxiella Serratia 1 7838 613 0 genus 192 16 1 0 61652 species 309 Serratia rubidaea 0 61651 species 1 Serratia ficaria 331 0 2647522 no rank 8 2496 1 species 768493 0 205 Serratia sp. AS13 species 671990 0 1 Serratia sp. FGI94 267 Serratia sp. FS14 322 species 1327989 0 1 Serratia sp. MYb239 271 species 0 2033438 1 205 Serratia sp. AS12 1 species 768490 0 Serratia sp. SCBI 674 species 0 488142 1 Serratia sp. ATCC 39006 264 0 104623 species 1 1 species 0 1758196 288 Serratia sp. SSNIH1 Serratia marcescens 2430 species 615 0 1 Serratia fonticola 939 47917 0 species 1 1 species 0 28151 188 Serratia proteamaculans Serratia plymuthica 594 species 0 82996 1 0 614 species 1 Serratia liquefaciens 359 1 22846 Erwiniaceae 28 77 family 0 1903409 101 genus 0 53335 11 Pantoea 1 4278 species 553 0 1 Pantoea ananatis 500 Candidatus Pantoea carbekii 918 0 1235990 species 1 434 1 0 1654067 species group 1 549 0 species 434 Pantoea agglomerans 678 Pantoea vagans 1 470934 0 species 234 Pantoea rwandensis 1 0 1076550 species 3 no rank 0 2630326 839 1484157 0 species 1 Pantoea sp. PSNIH2 278 species 0 1484158 1 Pantoea sp. PSNIH1 246 Pantoea sp. At-9b 315 0 592316 species 1 Pantoea alhagi 288 0 1891675 species 1 286 Pantoea stewartii 1 species 66269 0 0 82986 genus 9 2 Tatumella 292 1 283 Tatumella citrea 1 53336 0 species 0 51228 21 genus 2 Wigglesworthia 2621 1 2600 Wigglesworthia glossinidia 1 species 51229 0 719 2 genus 0 2100764 393 Pantoea calida 1 665913 0 species Pantoea gaviniae 326 665914 0 species 1 1 2123 Erwinia 8 0 551 31 genus 457 Erwinia billingiae 1 182337 0 species 1 species 1922217 0 524 Candidatus Erwinia sp. ErCipseudotaxifoliae Erwinia pyrifoliae 177 species 79967 0 1 1 species 0 552 266 Erwinia amylovora 1 no rank 0 2622719 206 Erwinia sp. Ejp617 206 species 0 215689 1 193 Erwinia tasmaniensis 1 0 338565 species Erwinia gerundensis 269 species 0 1619313 1 2 genus 38 32199 0 12736 1 Buchnera 9 0 species 1 Buchnera aphidicola 12698 1 366 Budviciaceae 3 1903416 0 6 family 2 0 82984 13 genus 360 1 Pragia 347 Pragia fontium 1 species 82985 0 22 1903414 0 family 50 1 10758 Morganellaceae 4 29487 0 21 genus 1678 1 Photorhabdus Photorhabdus luminescens 556 0 29488 species 1 species 574560 0 1 Photorhabdus temperata 422 1 species 291112 0 679 Photorhabdus asymbiotica 1 397 Morganella 2 581 0 genus 3 species 0 582 1 Morganella morganii 394 Proteus 1 2949 583 0 genus 22 3 1 species 585 0 1075 Proteus vulgaris Proteus mirabilis 1852 0 584 species 1 11 genus 0 586 4 Providencia 1 2011 0 126385 species 1 Providencia alcalifaciens 417 727 Providencia rettgeri 1 0 587 species 856 Providencia stuartii 1 species 0 588 0 637 genus 11 2 Arsenophonus 1203 1 1192 Arsenophonus symbiont of Lipoptena fortisetosa 1 0 634113 species Xenorhabdus 1 2470 626 0 genus 16 6 461 Xenorhabdus hominickii 1 0 351679 species species 351671 0 1 Xenorhabdus doucetiae 369 species 0 628 1 Xenorhabdus nematophila 418 Xenorhabdus bovienii 785 40576 0 species 1 Xenorhabdus poinarii 421 species 40577 0 1 13159 1 Hafniaceae 14 0 1903412 19 family 1 11975 Edwardsiella 8 genus 74 635 0 1 species 1821960 0 448 Edwardsiella anguillarum 9757 Edwardsiella tarda 1 species 0 636 841 0 2676541 no rank 2 408 Edwardsiella sp. EA181011 1 species 1578828 0 Edwardsiella sp. LADL05-105 433 species 0 1650654 1 1 67780 0 species 347 Edwardsiella ictaluri 1263550 0 species 1 Edwardsiella piscicida 333 1 species 93378 0 175 Edwardsiella hoshinae 568 0 10 genus 3 Hafnia 1 910 660 Hafnia alvei 1 0 569 species 1 no rank 0 2621980 240 Hafnia sp. CBA7124 240 species 1848580 0 1 255 1 Obesumbacterium 2 82982 0 genus 5 250 Obesumbacterium proteus 1 82983 0 species 394 family 543 0 121 Enterobacteriaceae 1 58037 1086 1 Candidatus Ishikawaella 2 4 genus 0 409304 1082 Candidatus Ishikawaella capsulata 1 0 168169 species 3 160674 0 8 genus 1 1025 Raoultella Raoultella ornithinolytica 759 0 54291 species 1 1 species 0 575 258 Raoultella planticola genus 194 547 0 22 Enterobacter 1 5810 4393 12 species group 0 354276 1 species 0 550 1933 Enterobacter cloacae 1 1812935 0 species 121 Enterobacter cloacae complex 'Hoffmann cluster IV' species 889 158836 0 3 Enterobacter hormaechei 1189 1 1 subspecies 0 1812934 187 Enterobacter cloacae complex 'Hoffmann cluster III' 1 subspecies 0 1296536 113 Enterobacter xiangfangensis 3 no rank 2757714 0 365 1 2077137 0 species 136 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 species 0 1915310 111 Enterobacter cloacae complex sp. ECNIH7 Enterobacter cloacae complex bacterium 118 0 2027919 species 1 species 0 69218 1 Enterobacter cancerogenus 117 127 Enterobacter kobei 1 0 208224 species 1 0 61645 species 423 Enterobacter asburiae species 299767 0 1 Enterobacter ludwigii 118 9 no rank 2608935 0 1223 Enterobacter sp. R4-368 166 0 1166130 species 1 species 1560339 0 1 Enterobacter sp. E20 89 89 Enterobacter sp. Crenshaw 1 0 1977566 species Enterobacter sp. ODB01 129 1827481 0 species 1 166 Enterobacter sp. 638 1 species 0 399742 1 species 1692238 0 167 Enterobacter sp. FY-07 Enterobacter sp. SA187 193 species 1914861 0 1 1868135 0 species 1 Enterobacter sp. HK169 102 Enterobacter sp. CRENT-193 122 2051905 0 species 1 253 1 0 579 genus Kluyvera intermedia 253 0 61648 species 1 216 genus 1048757 0 1 Candidatus Moranella endobia 216 1048758 0 species 1 14 genus 128 0 544 4495 1 Citrobacter 545 0 species 1 Citrobacter koseri 239 2369 species group 0 1344959 7 2066049 0 species 1 Citrobacter freundii complex sp. CFNIH2 201 0 67827 species 1 Citrobacter werkmanii 330 57706 0 species 1 Citrobacter braakii 343 182 Citrobacter freundii complex sp. CFNIH9 1 species 0 2077149 Citrobacter freundii complex sp. CFNIH4 200 species 0 2077148 1 943 Citrobacter freundii 1 546 0 species 1 0 2077147 species 170 Citrobacter freundii complex sp. CFNIH3 184 Citrobacter rodentium 1 species 0 67825 0 2644389 no rank 2 422 255 Citrobacter sp. CFNIH10 1 0 1920110 species 0 1702170 species 1 Citrobacter sp. FDAARGOS_156 167 35703 0 species 1 Citrobacter amalonaticus 559 594 Citrobacter farmeri 1 0 67824 species Escherichia 8625 1 561 0 genus 16 5 1 0 1499973 species 165 Escherichia marmotae 1 0 564 species 131 Escherichia fergusonii 1 562 0 species 7833 Escherichia coli 208962 0 species 1 Escherichia albertii 480 genus 21 83654 0 4 Leclercia 793 1 0 2627398 no rank 2 480 Leclercia sp. LSNIH1 247 1920114 0 species 1 233 Leclercia sp. LSNIH3 1 0 1920116 species 83655 0 species 1 Leclercia adecarboxylata 292 1 760 Pluralibacter 3 4 genus 1330546 0 475 Pluralibacter gergoviae 1 61647 0 species 1 1334193 0 species 281 [Enterobacter] lignolyticus 5 0 1330547 5 genus 1036 1 Kosakonia 206 Kosakonia cowanii 1 species 208223 0 1 species 0 283686 348 Kosakonia radicincitans 0 1158459 species 1 Kosakonia sacchari 210 267 Kosakonia oryzae 1 0 497725 species 2105 5 0 36866 no rank Enterobacteriaceae bacterium ENNIH2 185 0 1920109 species 1 Enterobacteriaceae bacterium ENNIH3 200 species 0 1920128 1 2066051 0 species 1 Enterobacteriaceae bacterium ENNIH1 193 1320 Plautia stali symbiont 1 0 891974 species 207 Enterobacteriaceae bacterium strain FGI 57 1 species 693444 0 10 genus 163 570 0 1 10477 Klebsiella 746 Klebsiella michiganensis 1 1134687 0 species 223 Klebsiella quasivariicola 1 species 0 2026240 571 0 species 1 Klebsiella oxytoca 1306 526 no rank 0 2608929 2 247 Klebsiella sp. M5al 1 species 0 1934254 1905288 0 species 1 Klebsiella sp. LTGPAF-6F 279 1 species 573 0 4457 Klebsiella pneumoniae Klebsiella quasipneumoniae 358 1463165 0 species 1 species 0 548 1 Klebsiella aerogenes 2144 Klebsiella variicola 554 0 244366 species 1 0 191675 no rank 20 9338 9338 20 clade 0 84563 2 genus 1906657 0 2 Candidatus Doolittlea 1 137 0 1778262 species 1 Candidatus Doolittlea endobia 135 Candidatus Hoaglandella 186 1 1906659 0 genus 5 2 0 1778263 species 1 Candidatus Hoaglandella endobia 181 472 1 genus 0 1906661 1 0 1070130 species 472 Candidatus Gullanella endobia 2 1906660 0 genus 7 614 1 Candidatus Mikella species 0 1778264 1 Candidatus Mikella endobia 607 1377 4 clade 0 146507 species 134287 0 1 secondary endosymbiont of Heteropsylla cubana 554 2 568987 0 genus 1 596 1 Candidatus Hamiltonella 1 species 138072 0 595 Candidatus Hamiltonella defensa 227 secondary endosymbiont of Ctenarytaina eucalypti 1 1199245 0 species 1400 1 genus 0 1682492 0 1410383 species 1 Candidatus Tachikawaea gelatinosa 1400 7 clade 84564 0 4624 203804 0 genus 40 7 Candidatus Blochmannia 4624 1 species 0 251535 1 Candidatus Blochmannia vafer 935 0 101534 species 1 Candidatus Blochmannia pennsylvanicus 624 2 0 711328 no rank 1559 1 1505597 0 species 897 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 662 0 1505596 species 1 779 Candidatus Blochmannia floridanus 1 0 203907 species Candidatus Blochmannia chromaiodes 687 251542 0 species 1 528 1 0 199891 clade 1 1835721 0 species 528 secondary endosymbiont of Trabutina mannipara 7245 1 Salmonella 3 13 genus 590 0 species 0 54736 1 Salmonella bongori 427 28901 0 species 1 Salmonella enterica 6805 genus 22 413496 0 8 Cronobacter 1 1594 236 Cronobacter condimenti 1 0 1163710 species 0 413501 species 1 Cronobacter muytjensii 205 0 535744 species 1 Cronobacter universalis 180 1 species 413497 0 210 Cronobacter dublinensis Cronobacter sakazakii 374 0 28141 species 1 species 413503 0 1 Cronobacter malonaticus 168 199 Cronobacter turicensis 1 413502 0 species 1 749 Candidatus Riesia 2 6 genus 401618 0 species 0 401619 1 Candidatus Riesia pediculicola 743 4 4 genus 620 0 359 1 Shigella Shigella flexneri 90 species 0 623 1 0 2629414 no rank 1 88 88 Shigella sp. PAMC 28760 1 0 1813821 species Shigella dysenteriae 177 species 622 0 1 713 1 Cedecea 2 4 genus 0 158483 Cedecea neteri 709 species 0 158822 1 188 1 Shimwellia 2 1 genus 1335483 0 species 0 563 1 Shimwellia blattae 187 776 1 Lelliottia 4 1330545 0 genus 1 0 69220 species 1 Lelliottia nimipressuralis 151 species 61646 0 1 Lelliottia amnigena 435 1 1907578 0 species 189 Lelliottia jeotgali 1 37448 Xanthomonadales 54 171 order 0 135614 14 1775411 0 28 family 1 3348 Rhodanobacteraceae 314 1 Luteibacter 2 242605 0 2 genus 0 242606 species 1 Luteibacter rhizovicinus 312 298 1 2233801 0 genus 1 species 2021234 0 298 Xanthomonadales bacterium D13 1 1241 Dyella 4 genus 33 231454 0 1 species 231455 0 424 Dyella japonica species 445710 0 1 Dyella thiooxydans 439 1 species 0 1379159 345 Dyella jiangningensis genus 6 0 75309 2 Rhodanobacter 1 558 1 666685 0 species 552 Rhodanobacter denitrificans Dokdonella 532 1 6 genus 323413 0 2 0 323415 species 1 Dokdonella koreensis 526 1 377 Frateuria 2 70411 0 genus 3 1 species 0 81475 374 Frateuria aurantia 33929 1 Xanthomonadaceae 39 32033 0 family 260 Xanthomonas 16769 1 genus 317 0 338 17 Xanthomonas vasicola 232 56459 0 species 1 0 56460 species 1 Xanthomonas vesicatoria 683 1260 Xanthomonas translucens 1 species 343 0 1 0 347 species 3729 Xanthomonas oryzae 358 Xanthomonas phaseoli 1 species 1985254 0 322 Xanthomonas alfalfae 1 0 366650 species 1 species 442694 0 385 Xanthomonas perforans 1 species 339 0 2607 Xanthomonas campestris 456327 0 species 1 Xanthomonas euvesicatoria 426 species 29447 0 1 Xanthomonas albilineans 361 0 56458 species 1 Xanthomonas sacchari 482 0 56454 species 1 Xanthomonas hortorum 478 1 53413 0 species 305 Xanthomonas axonopodis 2 0 643453 species group 4056 1 0 346 species 3292 Xanthomonas citri 366648 0 species 1 Xanthomonas fuscans 764 1 48664 0 species 768 Xanthomonas fragariae 2 0 2370 5 genus 1 2509 Xylella Xylella fastidiosa 2504 0 2371 species 1 7626 1 Stenotrophomonas 9 40323 0 genus 117 species 0 83617 1 Stenotrophomonas nitritireducens 512 Stenotrophomonas acidaminiphila 868 128780 0 species 1 Stenotrophomonas rhizophila 377 species 0 216778 1 3720 species group 995085 0 1 40324 0 species 1 Stenotrophomonas maltophilia 3720 2032 196198 0 no rank 4 1 species 0 1904944 282 Stenotrophomonas sp. LM091 1 species 2005046 0 519 Stenotrophomonas sp. WZN-1 1 species 0 1827305 711 Stenotrophomonas sp. MYb57 1793721 0 species 1 Stenotrophomonas sp. KCTC 12332 520 Luteimonas 1 341 83614 0 genus 2 2 339 Luteimonas sp. 100111 1 species 0 2006110 0 83618 18 genus 3 Pseudoxanthomonas 1 1168 811 Pseudoxanthomonas suwonensis 1 314722 0 species 0 415229 species 1 Pseudoxanthomonas spadix 339 Lysobacter 1 5256 0 68 32 genus 5 435897 0 species 1 Lysobacter capsici 1632 Lysobacter antibioticus 2038 84531 0 species 1 species 0 262324 1 Lysobacter gummosus 908 646 Lysobacter enzymogenes 1 species 69 0 order 41 0 135623 44 Vibrionales 1 280248 Vibrionaceae 1 280207 170 family 641 0 43 Vibrio 1 259559 662 0 genus 1530 30 Vibrio fluvialis 622 species 676 0 1 610 Vibrio mimicus 1 species 674 0 672 0 species 1 Vibrio vulnificus 3492 species group 0 717610 10 233391 Vibrio natriegens 1521 691 0 species 1 species 0 190895 1 Vibrio rotiferianus 113430 2 species subgroup 0 2315253 2798 1 0 50719 species 1956 Vibrio diabolicus Vibrio antiquarius 842 species 0 150340 1 Vibrio campbellii 29872 species 680 0 1 6558 Vibrio alginolyticus 1 0 663 species 5169 Vibrio parahaemolyticus 1 species 670 0 696485 0 species 1 Vibrio owensii 25834 766224 0 species 1 Vibrio jasicida 6884 1 species 0 669 41325 Vibrio harveyi 5478 Vibrio hyugaensis 1 species 0 1534743 0 1435069 species 1 Vibrio tritonius 679 Vibrio tasmaniensis 1192 0 212663 species 1 52443 0 species 1 Vibrio tapetis 1065 1 species group 0 1891919 952 952 Vibrio tubiashii 1 species 0 29498 0 28173 species 1 Vibrio nigripulchritudo 577 Vibrio qinghaiensis 500 0 2025808 species 1 1 species 190893 0 1696 Vibrio coralliilyticus 1 species 55601 0 1774 Vibrio anguillarum 2 0 2614977 no rank 877 species 0 1116375 1 Vibrio sp. EJY3 569 Vibrio sp. 2521-89 308 0 2014742 species 1 771 Vibrio furnissii 1 29494 0 species 523 Vibrio breoganii 1 species 553239 0 1 45658 0 species 1191 Vibrio scophthalmi species 0 666 1 Vibrio cholerae 1864 species 687 0 1 Vibrio gazogenes 775 4 657 0 genus 14 12609 1 Photobacterium 1295392 0 species 1 Photobacterium gaetbulicola 404 species 0 74109 1 Photobacterium profundum 965 Photobacterium damselae 11226 species 38293 0 1 Paraphotobacterium 1 3429 21 genus 2042066 0 2 Paraphotobacterium marinum 3408 0 1755811 species 1 2 0 246861 genus 1 406 1 Grimontia 405 Grimontia hollisae 1 species 0 673 4 genus 19 511678 0 4034 1 Aliivibrio 2180 Aliivibrio wodanis 1 species 80852 0 1 40269 0 species 802 Aliivibrio salmonicida 1033 Aliivibrio fischeri 1 0 668 species 0 1775403 order 16 4 Nevskiales 1 413 Sinobacteraceae 3 family 568386 0 1 394 2 0 2689614 family Steroidobacter 394 1 0 469322 33 genus 2 Steroidobacter denitrificans 361 species 0 465721 1 36 0 72273 order 36 1 34502 Thiotrichales 5 135617 0 20 family 2459 1 Thiotrichaceae 8 genus 40751 0 2 Thioploca 1 1153 1 40754 0 species 1145 Thioploca ingrica 2 0 1021 1 genus 1 1286 Beggiatoa 1 species 0 288004 1285 Beggiatoa leptomitoformis Francisellaceae 1 24578 32 family 0 34064 15 Francisella 23288 1 0 262 230 genus 12 species 263 0 1 Francisella tularensis 3894 Francisella halioticida 4647 species 549298 0 1 Francisella sp. CA97-1460 1583 1542390 0 species 1 Francisella sp. TX077308 1072 573569 0 species 1 2058 Francisella noatunensis 1 657445 0 species Francisella hispaniensis 1294 species 622488 0 1 1048 Francisella persica 1 species 954 0 1 28110 0 species 3061 Francisella philomiragia 573570 0 species 1 Francisella sp. TX077310 1768 2633 no rank 0 2610885 2 1528 Francisella sp. FSC1006 1 1547445 0 species Francisella sp. MA067296 1105 475375 0 species 1 Allofrancisella 1258 1 5 genus 1869285 0 2 1253 Allofrancisella guangzhouensis 1 594679 0 species Piscirickettsiaceae 1 7429 135616 0 family 49 15 Piscirickettsia 1 1403 4 genus 1237 0 2 Piscirickettsia salmonis 1399 1238 0 species 1 3221 1 Cycloclasticus 4 62 genus 34067 0 Cycloclasticus zancles 1175 species 0 1329899 1 2621467 0 no rank 2 1984 1 species 385025 0 997 Cycloclasticus sp. P1 species 0 728003 1 Cycloclasticus sp. PY97N 987 1 1307 Methylophaga 3 genus 19 40222 0 0 754476 species 1 Methylophaga nitratireducenticrescens 732 556 Methylophaga frappieri 1 species 0 754477 560 1 Hydrogenovibrio 2 28884 0 4 genus 1 species 39765 0 556 Hydrogenovibrio crunogenus 3 5 genus 0 933 1 889 Thiomicrospira 470 Thiomicrospira aerophila 1 0 92245 species 1 147268 0 species 414 Thiomicrospira cyclica Pseudomonadales 89089 1 order 264 0 72274 129 Moraxellaceae 33639 1 0 468 91 family 42 24932 1 Acinetobacter 25 genus 256 0 469 722 1 species 0 202950 722 Acinetobacter sp. ADP1 1 strain 62977 0 1 species 40215 0 1088 Acinetobacter junii 0 909768 species group 5 11335 885 Acinetobacter lactucae 1 0 1785128 species 3850 Acinetobacter pittii 1 species 48296 0 1 species 0 471 1495 Acinetobacter calcoaceticus 1167 Acinetobacter nosocomialis 1 species 106654 0 0 470 species 1 Acinetobacter baumannii 3938 7 0 196816 no rank 4330 Acinetobacter sp. SWBY1 561 species 2079596 0 1 694 Acinetobacter sp. TTH0-4 1 species 1646498 0 480 Acinetobacter sp. LoGeW2-3 1 1808001 0 species species 0 1608473 1 Acinetobacter sp. NCu2D-2 530 775 Acinetobacter sp. ACNIH1 1 species 1636603 0 1 species 0 1407071 644 Acinetobacter sp. TGL-Y2 1758189 0 species 1 Acinetobacter sp. ACNIH2 646 Acinetobacter schindleri 627 species 0 108981 1 species 40214 0 1 Acinetobacter johnsonii 527 1031 Acinetobacter bereziniae 1 0 106648 species Acinetobacter haemolyticus 896 29430 0 species 1 1 species 0 40216 467 Acinetobacter radioresistens 1 species 1789224 0 611 Acinetobacter larvae 487316 0 species 1 Acinetobacter soli 604 Acinetobacter oleivorans 838 species 0 1148157 1 Acinetobacter indicus 337 756892 0 species 1 species 1324350 0 1 Acinetobacter equi 1263 1 2791 Moraxella 5 34 genus 475 0 Moraxella osloensis 1134 species 0 34062 1 298 Moraxella ovis 1 0 29433 species 1 species 0 480 753 Moraxella catarrhalis 1 species 386891 0 572 Moraxella bovoculi 129 genus 0 497 11 Psychrobacter 5825 1 1 45610 0 species 647 Psychrobacter urativorans Psychrobacter arcticus 450 species 0 334543 1 1 species 0 330922 500 Psychrobacter cryohalolentis 0 261164 species 1 Psychrobacter alimentarius 711 3388 0 196806 no rank 6 1 species 0 1699622 532 Psychrobacter sp. P2G3 1 1720344 0 species 488 Psychrobacter sp. AntiMn-1 530 Psychrobacter sp. P11G5 1 0 1699624 species 527 Psychrobacter sp. DAB_AL43B 1 species 0 1028416 504 Psychrobacter sp. G 1 species 571800 0 807 Psychrobacter sp. PRwf-1 1 species 349106 0 304 family 0 135621 86 Pseudomonadaceae 1 55186 286 0 genus 1271 80 Pseudomonas 1 52723 species 198620 0 1 Pseudomonas koreensis 646 species 237610 0 1 Pseudomonas psychrotolerans 468 0 1583341 species 1 Pseudomonas cerasi 493 1 1853130 0 species 583 Pseudomonas silesiensis 0 136849 species group 8 5504 species 33069 0 1 Pseudomonas viridiflava 238 Pseudomonas cichorii 270 36746 0 species 1 232 Pseudomonas avellanae 1 0 46257 species 750 Pseudomonas syringae group genomosp. 3 1 251701 0 species 332 1 no rank 2775504 0 332 Pseudomonas sp. Lz4W 1 0 1206777 species 2546 species subgroup 0 251695 1 2546 Pseudomonas syringae 1 317 0 species 1136 0 251698 species subgroup 2 1 species 0 29438 710 Pseudomonas savastanoi 426 Pseudomonas amygdali 1 species 0 47877 0 104087 species 1 Pseudomonas frederiksbergensis 830 30 0 196821 no rank 9962 Pseudomonas sp. StFLB209 352 species 1028989 0 1 346 Pseudomonas sp. TCU-HL1 1 1856685 0 species Pseudomonas sp. M30-35 408 species 1981174 0 1 Pseudomonas sp. URMO17WK12:I11 597 species 1283291 0 1 237 Pseudomonas sp. SWI6 1 species 0 2083051 species 2083055 0 1 Pseudomonas sp. LH1G9 285 Pseudomonas sp. JY-Q 266 1338689 0 species 1 Pseudomonas sp. MYb193 191 0 1827300 species 1 species 69328 0 1 Pseudomonas sp. VLB120 190 267 Pseudomonas sp. LG1D9 1 species 0 2083054 1 species 1500686 0 322 Pseudomonas sp. Os17 Pseudomonas sp. SWI44 221 0 2083053 species 1 species 0 1636610 1 Pseudomonas sp. PONIH3 307 1 species 0 2049589 240 Pseudomonas sp. HLS-6 Pseudomonas sp. SWI36 307 species 0 2083052 1 1 species 0 1898684 356 Pseudomonas sp. LPH1 Pseudomonas sp. DR 5-09 309 1534110 0 species 1 Pseudomonas sp. MRSN12121 353 0 1611770 species 1 1 species 1931241 0 437 Pseudomonas sp. S-6-2 1 1294143 0 species 420 Pseudomonas sp. ATCC 13867 1 0 1415630 species 671 Pseudomonas sp. TKP 239 Pseudomonas sp. FGI182 1 1259844 0 species 1 species 0 1649877 282 Pseudomonas sp. CCOS 191 319 Pseudomonas sp. St29 1 species 1500687 0 species 1930532 0 1 Pseudomonas sp. CC6-YY-74 603 1 species 1207075 0 288 Pseudomonas sp. UW4 species 0 2067572 1 Pseudomonas sp. NC02 327 0 1659194 species 1 Pseudomonas sp. GR 6-02 314 1 0 2018067 species 224 Pseudomonas sp. FDAARGOS_380 species 0 2069256 1 Pseudomonas sp. XWY-1 284 440 Pseudomonas knackmussii 1 species 0 65741 2546 species group 0 136842 2 0 587753 species 1 Pseudomonas chlororaphis 1978 Pseudomonas fragi 568 species 296 0 1 species 0 219572 1 Pseudomonas antarctica 279 Pseudomonas alcaliphila 308 101564 0 species 1 671 Pseudomonas brassicacearum 1 species 930166 0 species group 136843 0 9 7955 1 species 0 47879 254 Pseudomonas corrugata 234 Pseudomonas poae 1 species 0 200451 Pseudomonas protegens 526 species 380021 0 1 1 species 0 200450 710 Pseudomonas trivialis 1 species 76761 0 289 Pseudomonas veronii Pseudomonas azotoformans 987 47878 0 species 1 1 species 294 0 4459 Pseudomonas fluorescens 227 Pseudomonas orientalis 1 species 0 76758 Pseudomonas mandelii 269 species 75612 0 1 Pseudomonas parafulva 686 0 157782 species 1 Pseudomonas alkylphenolica 270 species 237609 0 1 species 0 216142 1 Pseudomonas rhizosphaerae 285 7352 6 species group 0 136841 Pseudomonas aeruginosa 3420 species 0 287 1 1 0 300 species 1475 Pseudomonas mendocina 0 53408 species 1 Pseudomonas citronellolis 868 43263 0 species 1 Pseudomonas alcaligenes 365 483 Pseudomonas resinovorans 1 species 0 53412 1 species subgroup 0 1232139 741 741 Pseudomonas furukawaii 1 0 1149133 species 3259 0 136846 species group 2 74829 0 species 1 Pseudomonas balearica 375 1 0 578833 species subgroup 2884 2884 Pseudomonas stutzeri 1 species 0 316 1 0 1788301 species 329 Pseudomonas versuta Pseudomonas cremoricolorata 287 157783 0 species 1 1 species 312306 0 284 Pseudomonas entomophila 7790 0 136845 species group 6 0 78327 species 1 Pseudomonas mosselii 1116 1 0 70775 species 264 Pseudomonas plecoglossicida species 303 0 1 Pseudomonas putida 4384 1 47880 0 species 567 Pseudomonas fulva 1057 Pseudomonas monteilii 1 0 76759 species species 47885 0 1 Pseudomonas oryzihabitans 402 Pseudomonas lurida 225 species 0 244566 1 1579 3 subfamily 351 0 3 352 0 genus 15 1 1579 Azotobacter 1 354 0 species 543 Azotobacter vinelandii species 0 353 1 Azotobacter chroococcum 1021 1 580 Oblitimonas 2 1849530 0 genus 1 1 1697053 0 species 579 Oblitimonas alkaliphila 186 order 0 135622 106 Alteromonadales 69036 1 7755 1 Colwelliaceae 9 family 28 267889 0 1518149 0 6 genus 2 Thalassotalea 1 1130 species 1763536 0 1 Thalassotalea crassostreae 1124 6 28228 0 genus 50 1 6597 Colwellia 0 28229 species 1 Colwellia psychrerythraea 1348 1967665 0 species 1 Colwellia beringensis 1398 3801 3 0 196834 no rank 1 species 0 58049 1185 Colwellia sp. MT41 1337 Colwellia sp. PAMC 21821 1 species 1816219 0 1 1816218 0 species 1279 Colwellia sp. PAMC 20917 1 345 Ferrimonadaceae 3 7 family 267892 0 2 0 44011 genus 2 1 338 Ferrimonas 1 species 0 44012 336 Ferrimonas balearica 3 family 267893 0 6 Idiomarinaceae 1400 1 5 135575 0 24 genus 1 1397 Idiomarina 656 no rank 0 2614829 2 294 Idiomarina sp. OT37-5b 1 0 2100422 species species 2055892 0 1 Idiomarina sp. X4 362 Idiomarina loihiensis 365 species 135577 0 1 352 Idiomarina piscisalsi 1 1096243 0 species Alteromonadaceae 19487 1 family 48 0 72275 30 1 4549 Marinobacter 10 genus 91 2742 0 Marinobacter psychrophilus 389 species 330734 0 1 Marinobacter similis 329 1420916 0 species 1 Marinobacter adhaerens 346 species 0 1033846 1 Marinobacter hydrocarbonoclasticus 517 0 2743 species 1 Marinobacter salarius 1357 1420917 0 species 1 1874317 0 species 1 Marinobacter salinus 337 3 83889 0 no rank 1183 1 species 0 490759 385 Marinobacter sp. BSs20148 1 species 1671721 0 363 Marinobacter sp. CP1 Marinobacter sp. LQ44 435 species 0 1749259 1 10 77 genus 0 226 1 10775 Alteromonas Alteromonas australica 526 589873 0 species 1 1 28108 0 species 4737 Alteromonas macleodii Alteromonas mediterranea 1535 species 0 314275 1 species 287094 0 1 Alteromonas addita 646 1 0 233316 species 861 Alteromonas stellipolaris 1 715451 0 species 616 Alteromonas naphthalenivorans 1777 0 2614992 no rank 3 544 Alteromonas sp. Mac1 1 1777491 0 species 572 Alteromonas sp. MB-3u-76 1 2058133 0 species 661 Alteromonas sp. RW2A1 1 1917158 0 species 3 genus 0 1751872 2 Lacimicrobium 1 647 1 0 1526571 species 644 Lacimicrobium alkaliphilum Paraglaciecola 1 1520 1621534 0 genus 6 2 1 0 326544 species 1514 Paraglaciecola psychrophila genus 2 261825 0 2 Agarivorans 1 522 520 Agarivorans gilvus 1 680279 0 species 0 89404 18 genus 3 Glaciecola 1 1426 747 0 2618684 no rank 1 Glaciecola sp. 4H-3-7+YE-5 747 species 983545 0 1 Glaciecola nitratireducens 661 300231 0 species 1 267888 0 24 family 25 Pseudoalteromonadaceae 1 20403 20379 1 Pseudoalteromonas 24 0 53246 345 genus Pseudoalteromonas luteoviolacea 871 43657 0 species 1 no rank 0 194690 5 5836 Pseudoalteromonas sp. NC201 2672 species 0 1514074 1 727 Pseudoalteromonas sp. SM9913 1 234831 0 species 855 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 species 1720343 0 species 283699 0 1 Pseudoalteromonas sp. Bsw20308 823 759 Pseudoalteromonas sp. 13-15 1 species 1761891 0 Pseudoalteromonas rubra 433 43658 0 species 1 1050 Pseudoalteromonas tunicata 1 species 0 314281 631 Pseudoalteromonas issachenkonii 1 species 0 152297 1 28109 0 species 705 Pseudoalteromonas nigrifaciens 1 species 28107 0 736 Pseudoalteromonas espejiana Pseudoalteromonas piratica 915 species 1348114 0 1 161398 0 species 1 Pseudoalteromonas phenolica 935 species 0 166935 1 Pseudoalteromonas translucida 704 589 Pseudoalteromonas agarivorans 1 0 176102 species species 43659 0 1 Pseudoalteromonas tetraodonis 625 Pseudoalteromonas arctica 863 0 394751 species 1 Pseudoalteromonas aliena 906 247523 0 species 1 298657 0 species 1 Pseudoalteromonas spongiae 967 species 0 228 1 Pseudoalteromonas haloplanktis 725 288 0 species 1 Pseudoalteromonas atlantica 1233 Pseudoalteromonas piscicida 602 43662 0 species 1 708 Pseudoalteromonas marina 1 267375 0 species 3 15 family 267891 0 1143 1 Moritellaceae Moritella 1 1128 7 genus 0 58050 2 1121 Moritella viscosa 1 species 0 80854 267890 0 family 27 25 Shewanellaceae 16042 1 1 16015 Shewanella 24 genus 182 0 22 1 species 404011 0 583 Shewanella piezotolerans Shewanella psychrophila 1270 225848 0 species 1 Shewanella frigidimarina 878 species 0 56812 1 2419 no rank 0 196818 6 Shewanella sp. ANA-3 367 94122 0 species 1 1 species 0 2029986 433 Shewanella sp. WE21 1 species 0 60480 293 Shewanella sp. MR-4 Shewanella sp. W3-18-1 483 species 351745 0 1 species 0 2059264 1 Shewanella sp. Pdp11 506 species 0 60481 1 Shewanella sp. MR-7 337 0 2018305 species 1 Shewanella bicestrii 340 species 0 192073 1 Shewanella denitrificans 530 Shewanella pealeana 431 70864 0 species 1 1 0 271097 species 687 Shewanella sediminis Shewanella japonica 1111 93973 0 species 1 1 species 0 260364 275 Shewanella marisflavi 334 Shewanella loihica 1 species 0 359303 60478 0 species 1 Shewanella amazonensis 300 1 species 0 60217 966 Shewanella violacea species 0 271098 1 Shewanella halifaxensis 2301 Shewanella baltica 1677 62322 0 species 1 1 species 24 0 553 Shewanella putrefaciens 60961 0 species 1 Shewanella woodyi 888 Shewanella oneidensis 290 70863 0 species 1 4 0 267894 7 family 2275 1 Psychromonadaceae 2268 1 Psychromonas 3 genus 15 67572 0 1228 Psychromonas ingrahamii 1 357794 0 species 1025 0 2614957 no rank 1 Psychromonas sp. CNPT3 1025 species 314282 0 1 21 order 55 0 118969 1 18098 Legionellales 2338 1 Coxiellaceae 5 0 118968 46 family 1 1481 Coxiella 3 0 776 9 genus no rank 0 2676648 1 739 0 325775 species 1 Coxiella endosymbiont of Amblyomma americanum 739 species 777 0 1 Coxiella burnetii 733 0 134284 no rank 1 811 species 1592897 0 1 Coxiella-like endosymbiont 811 15705 1 Legionellaceae 15 0 444 27 family Legionella 1 14781 0 445 genus 137 12 species 450 0 1 Legionella longbeachae 1398 species 0 2005262 1 Legionella endosymbiont of Polyplax serrata 1434 species 28087 0 1 Legionella sainthelensi 1377 4301 Legionella pneumophila 1 species 446 0 0 66969 species 1 Legionella waltersii 1056 998 Legionella hackeliae 1 449 0 species species 0 45067 1 Legionella lansingensis 772 species 0 29423 1 Legionella oakridgensis 777 1 species 452 0 430 Legionella spiritensis 861 Legionella clemsonensis 1 1867846 0 species Legionella fallonii 1240 species 96230 0 1 1 897 Tatlockia 2 0 465 genus 6 891 Tatlockia micdadei 1 species 0 451 6 order 4 1692040 0 1 1128 Acidiferrobacterales 1 1124 Acidiferrobacteraceae 5 family 12 0 1692041 2 genus 5 0 1692042 1 727 Sulfurifustis 722 Sulfurifustis variabilis 1 0 1675686 species Sulfuricaulis 385 1 genus 13 1744881 0 2 Sulfuricaulis limicola 372 1620215 0 species 1 order 119 0 135613 52 Chromatiales 1 15382 4 255526 0 6 family 576 1 Halothiobacillaceae Halothiobacillus 570 1 109262 0 genus 20 3 no rank 0 2636392 1 263 263 Halothiobacillus sp. LS2 1 0 1860122 species Halothiobacillus neapolitanus 287 927 0 species 1 4911 1 Ectothiorhodospiraceae 18 0 72276 55 family 1 351 Halorhodospira 2 85108 0 genus 8 Halorhodospira halophila 343 species 0 1053 1 genus 10 0 133193 2 Alkalilimnicola 443 1 species 351052 0 1 Alkalilimnicola ehrlichii 433 Ectothiorhodospira 463 1 2 genus 0 1051 2 461 1 0 2684909 no rank 1 species 1442136 0 461 Ectothiorhodospira sp. BSL-9 1335745 0 genus 16 3 Spiribacter 1 638 268 Spiribacter salinus 1 species 1335746 0 1 species 1335757 0 354 Spiribacter curvatus genus 81 0 106633 6 Thioalkalivibrio 1 2428 0 186931 species 1 Thioalkalivibrio nitratireducens 385 769 Thioalkalivibrio sulfidiphilus 1 species 1033854 0 1 0 2621013 no rank 419 species 396595 0 1 Thioalkalivibrio sp. K90mix 419 380 Thioalkalivibrio versutus 1 0 106634 species 108010 0 species 1 Thioalkalivibrio paradoxus 394 2 0 1765964 genus 2 533 1 Acidihalobacter 531 Acidihalobacter prosperus 1 0 160660 species Chromatiaceae 1 7298 0 1046 42 family 18 Candidatus Nitrosoglobus 814 1 1980513 0 genus 12 2 1 species 0 1630141 802 Candidatus Nitrosoglobus terrae 13724 0 9 genus 2 Thiocystis 1 496 1 0 73141 species 487 Thiocystis violascens 541 1 Marichromatium 2 genus 10 0 85076 Marichromatium purpuratum 531 37487 0 species 1 2 genus 8 0 156885 489 1 Thioflavicoccus 1 80679 0 species 481 Thioflavicoccus mobilis 5 genus 0 85072 2 Allochromatium 398 1 Allochromatium vinosum 393 0 1049 species 1 1 2018 Nitrosococcus 4 1227 0 25 genus species 1229 0 1 Nitrosococcus oceani 446 385 Nitrosococcus halophilus 1 0 133539 species 1 473531 0 species 1162 Nitrosococcus watsonii 1 no rank 0 82569 433 Chromatiaceae bacterium 2141T.STBD.0c.01a 433 species 1978339 0 1 Thiodictyon 2067 1 genus 15 0 53392 2 1 1166950 0 species 2052 Candidatus Thiodictyon syntrophicum family 4 449719 0 3 Granulosicoccaceae 1 937 1 933 Granulosicoccus 2 genus 17 437504 0 916 Granulosicoccus antarcticus 1 437505 0 species Wenzhouxiangellaceae 1 555 4 family 1676141 0 3 551 1 Wenzhouxiangella 2 4 genus 1676142 0 547 Wenzhouxiangella marina 1 0 1579979 species 502 2 no rank 0 451214 Thiohalobacter 502 1 0 1273155 genus 10 2 species 0 585455 1 Thiohalobacter thiocyanaticus 492 3 family 1 0 1738654 484 1 Woeseiaceae 1 483 Woeseia 2 0 1738655 genus 11 472 Woeseia oceani 1 species 0 1548547 0 135615 order 3 451 family 10 868 0 3 Cardiobacteriaceae 451 1 3 genus 869 0 2 Dichelobacter 441 1 438 Dichelobacter nodosus 1 species 0 870 0 135624 order 44 29 Aeromonadales 1 10386 28 84642 0 88 family 1 10342 Aeromonadaceae 3 genus 43947 0 2 Tolumonas 242 1 43948 0 species 1 Tolumonas auensis 239 Oceanisphaera 1 831 225143 0 6 genus 3 species 0 1903694 1 Oceanisphaera sp. AMac2203 367 Oceanisphaera profunda 458 species 1416627 0 1 331 genus 642 0 18 Aeromonas 1 8244 species 0 196024 1 Aeromonas dhakensis 254 2455 8 no rank 0 257493 1636606 0 species 1 Aeromonas sp. ASNIH1 536 Aeromonas sp. ASNIH2 218 0 1636607 species 1 Aeromonas sp. ASNIH3 214 0 1636608 species 1 1 0 1920107 species 199 Aeromonas sp. ASNIH7 1 species 2033033 0 232 Aeromonas sp. CU5 0 1636609 species 1 Aeromonas sp. ASNIH4 397 294 Aeromonas sp. ASNIH5 1 species 1758179 0 1 2033032 0 species 365 Aeromonas sp. CA23 1962 Aeromonas hydrophila 1 644 0 species Aeromonas veronii 876 654 0 species 1 251 Aeromonas media 1 651 0 species Aeromonas rivipollensis 260 species 0 948519 1 283 Aeromonas aquatica 1 species 0 558964 species 652 0 1 Aeromonas schubertii 268 species 0 648 1 Aeromonas caviae 186 1 645 0 species 1118 Aeromonas salmonicida genus 7 0 347533 2 Zobellella 490 1 347534 0 species 1 Zobellella denitrificans 483 0 129577 4 genus 2 Oceanimonas 447 1 443 1 no rank 0 2636315 Oceanimonas sp. GK1 443 511062 0 species 1 Cellvibrionales 10052 1 0 1706369 31 order 29 7 1706375 0 53 family 1 2305 Spongiibacteraceae 1 583 Spongiibacter 2 genus 8 630749 0 1 no rank 0 2631504 575 0 1620392 species 1 Spongiibacter sp. IMCC21906 575 629 1 Zhongshania 2 1434050 0 13 genus Zhongshania aliphaticivorans 616 1470434 0 species 1 4 genus 0 1084558 2 Oceanicoccus 1 1040 Oceanicoccus sagamiensis 1036 species 716816 0 1 family 49 1706371 0 12 Cellvibrionaceae 4545 1 Cellvibrio 1 1602 0 10 11 genus 4 483 Cellvibrio japonicus 1 species 0 155077 0 2624793 no rank 2 1108 570 Cellvibrio sp. PSBB006 1 0 1987723 species 1 1945512 0 species 538 Cellvibrio sp. PSBB023 genus 5 0 316625 2 Saccharophagus 1 729 1 0 86304 species 724 Saccharophagus degradans 2036021 0 genus 4 2 Agarilytica 1 1132 1 0 1737490 species 1128 Agarilytica rhodophyticola 2425 0 genus 1 2 Teredinibacter 613 1 Teredinibacter turnerae 612 0 2426 species 1 420 0 447467 genus 1 species 0 447471 1 Simiduia agarivorans 420 1620 1 Microbulbiferaceae 5 1706373 0 7 family 48073 0 40 genus 4 Microbulbifer 1613 1 species 0 260552 1 Microbulbifer agarilyticus 470 1 252514 0 species 532 Microbulbifer thermotolerans Microbulbifer aggregans 571 0 1769779 species 1 Halieaceae 1 1551 family 5 0 1706372 4 Halioglobus 1 1546 1217416 0 genus 40 3 930805 0 species 1 Halioglobus japonicus 836 species 930806 0 1 Halioglobus pacificus 670 73 135619 0 order 102 1 38902 Oceanospirillales 0 28256 105 family 33 Halomonadaceae 1 11640 1 794 Kushneria 3 0 504090 14 genus 351 Kushneria marisflavi 1 species 157779 0 Kushneria konosiri 429 species 0 698828 1 0 376488 genus 2 2 Halotalea 438 1 1 species 0 376489 436 Halotalea alkalilenta 1 433 Chromohalobacter 2 42054 0 2 genus 1 species 158080 0 431 Chromohalobacter salexigens 6 no rank 0 114403 2513 235572 0 genus 11 2 Candidatus Portiera 1290 1 91844 0 species 1 Candidatus Portiera aleyrodidarum 1279 2 genus 4 114185 0 473 1 Candidatus Carsonella Candidatus Carsonella ruddii 469 0 114186 species 1 2 0 1495768 genus 2 750 1 Candidatus Evansia Candidatus Evansia muelleri 748 species 0 1495769 1 0 204286 5 genus 2 Cobetia 550 1 1 species 28258 0 545 Cobetia marina 472 1 Salinicola 2 6 genus 0 404432 466 Salinicola tamaricis 1 1771309 0 species 6335 1 Halomonas 15 107 genus 2745 0 Halomonas chromatireducens 366 species 0 507626 1 Halomonas huangheensis 560 species 1178482 0 1 1 species 475662 0 758 Halomonas beimenensis 486 Halomonas aestuarii 1 species 1897729 0 species 213554 0 1 Halomonas campaniensis 346 no rank 0 2609666 8 3299 1971364 0 species 1 Halomonas sp. GT 429 1 0 1883416 species 482 Halomonas sp. 1513 1504981 0 species 1 Halomonas sp. KO116 397 1962264 0 species 1 Halomonas sp. 'Soap Lake #7' 420 1 species 1610576 0 393 Halomonas sp. R57-5 0 1949203 species 1 Halomonas sp. 'Soap Lake #6' 422 477 Halomonas sp. SF2003 1 species 2136172 0 Halomonas sp. GFAJ-1 279 1118153 0 species 1 1 species 115561 0 413 Halomonas hydrothermalis 255527 0 family 5 5 Saccharospirillaceae 1312 1 2 230494 0 6 genus 613 1 Reinekea Reinekea forsetii 607 0 1336806 species 1 0 1445504 4 genus 2 Gynuella 694 1 690 Gynuella sunshinyii 1 0 1445505 species family 26 135620 0 13 Oceanospirillaceae 1 5454 Thalassolituus 690 1 genus 4 0 187492 2 1 species 187493 0 686 Thalassolituus oleivorans Oleispira 1 703 7 genus 188907 0 2 696 Oleispira antarctica 1 0 188908 species Marinomonas 2557 1 13 genus 28253 0 4 1156 1 196814 0 no rank 1156 Marinomonas sp. MWYL1 1 species 400668 0 648 Marinomonas posidonica 1 0 936476 species 1 119864 0 species 740 Marinomonas mediterranea 1 555 Bacterioplanes 2 0 1537406 genus 6 1 0 1249553 species 549 Bacterioplanes sanyensis Marinobacterium 1 923 48075 0 3 genus 2 920 Marinobacterium aestuarii 1 0 1821621 species 541 1 Hahellaceae 3 family 3 0 224379 2 genus 11 0 158481 1 538 Hahella Hahella chejuensis 527 species 0 158327 1 9 family 26 0 224372 16845 1 Alcanivoracaceae Alcanivorax 1 16203 genus 113 59753 0 6 1 0 2638842 no rank 6350 species 1113728 0 1 Alcanivorax sp. NBRC 101098 6350 1 1306787 0 species 807 Alcanivorax pacificus 6570 Alcanivorax borkumensis 1 0 59754 species 1204 Alcanivorax xenomutans 1 species 0 1094342 species 285091 0 1 Alcanivorax dieselolei 1159 2 2025617 0 genus 26 1 616 Ketobacter species 1917421 0 1 Ketobacter alkanivorans 590 3 191033 0 family 26 1 758 Oleiphilaceae 8 genus 0 141450 2 Oleiphilus 1 732 141451 0 species 1 Oleiphilus messinensis 724 6 family 16 0 1920240 2250 1 Kangiellaceae 57 genus 261963 0 5 Kangiella 1 2234 Kangiella geojedonensis 497 species 914150 0 1 species 1561924 0 1 Kangiella profundi 569 564 Kangiella sediminilitoris 1 species 1144748 0 547 Kangiella koreensis 1 species 261964 0 13 118884 0 no rank 9853 1 0 198346 clade 1842 1842 Candidatus Baumannia cicadellinicola 1 186490 0 species Candidatus Thioglobus 1 3056 genus 68 0 655184 3 899 Candidatus Thioglobus autotrophicus 1 1705394 0 species 1427364 0 species 1 Candidatus Thioglobus singularis 2089 genus 0 1524249 1 472 1 species 1249552 0 472 Pseudohongiella spirulinae 3453 0 32036 clade 4 2 genus 11 1541743 0 1060 1 Candidatus Ruthia Candidatus Ruthia magnifica 1049 species 386487 0 1 1 species 0 113267 934 Bathymodiolus septemdierum thioautotrophic gill symbiont 1459 Calyptogena okutanii thioautotrophic gill symbiont 1 410330 0 species Thiolapillus 386 1 1608298 0 genus 5 2 1 1076588 0 species 381 Thiolapillus brandeum 2 349742 0 genus 6 644 1 Sedimenticola 1 0 1543721 species 638 Sedimenticola thiotaurini 107640 203 subphylum 68525 0 1 60599 Epsilonproteobacteria 73 29547 0 42 class 213849 0 114 order 66 Campylobacterales 59033 1 5 family 72293 0 15 Helicobacteraceae 1 8344 843 0 1 genus 2 Wolinella 1 199 198 Wolinella succinogenes 1 844 0 species Helicobacter 8140 1 genus 39 0 209 12 Helicobacter typhlonius 349 species 0 76936 1 Helicobacter mustelae 301 species 0 217 1 species 0 37372 1 Helicobacter bilis 507 210 0 species 1 Helicobacter pylori 4094 Helicobacter himalayensis 303 species 1591088 0 1 Helicobacter hepaticus 561 species 32025 0 1 1 213 0 species 393 Helicobacter cinaedi 1 0 2593540 no rank 327 Helicobacter sp. MIT 01-6242 327 species 0 222136 1 212 0 species 1 Helicobacter acinonychis 287 194 Helicobacter felis 1 species 214 0 785 Helicobacter cetorum 1 species 0 138563 5 family 0 2771472 1194 0 265570 genus 9 3 Sulfurovum 773 1 1 no rank 0 2646778 349 Sulfurovum sp. NBC37-1 349 species 0 387093 1 415 Sulfurovum lithotrophicum 1 species 0 206403 Nitratifractor 1 421 2 genus 269260 0 2 1 species 269261 0 419 Nitratifractor salsuginis Campylobacteraceae 47669 1 family 79 0 72294 41 30729 1 Campylobacter 26 0 194 260 genus 1 0 1965231 species 1852 Campylobacter pinnipediorum Campylobacter hominis 676 0 76517 species 1 1 497724 0 species 1407 Campylobacter subantarcticus 1123 Campylobacter peloridis 1 species 488546 0 Campylobacter insulaenigrae 1435 species 0 260714 1 1 species 206 0 2156 Campylobacter sputorum Campylobacter ureolyticus 1628 species 0 827 1 1 species 195 0 2032 Campylobacter coli 4 0 2593542 no rank 3578 1 species 0 1660074 837 Campylobacter sp. RM8964 1 0 1500960 species 1411 Campylobacter sp. RM16704 576 Campylobacter sp. RM6137 1 species 1660073 0 1 species 1660076 0 754 Campylobacter sp. RM12175 Campylobacter concisus 763 species 0 199 1 0 1244531 species 1 Campylobacter iguaniorum 713 1256 Campylobacter fetus 1 196 0 species Campylobacter helveticus 617 species 28898 0 1 1031542 0 species 1 Campylobacter volucris 1300 species 0 198 1 Campylobacter hyointestinalis 904 1 824 0 species 168 Campylobacter gracilis Campylobacter cuniculorum 1126 374106 0 species 1 Campylobacter jejuni 2743 species 0 197 1 1 0 201 species 3542 Campylobacter lari Campylobacter curvus 167 species 200 0 1 Campylobacter lanienae 539 species 75658 0 1 1 522485 0 species 744 Campylobacter avium 68 genus 57665 0 9 Sulfurospirillum 1 3705 0 194424 species 1 Sulfurospirillum halorespirans 325 272 Sulfurospirillum cavolei 1 species 366522 0 65553 0 species 1 Sulfurospirillum deleyianum 494 1 0 66821 species 357 Sulfurospirillum multivorans 1 species 44674 0 480 Sulfurospirillum barnesii 1709 0 2618290 no rank 3 538 Sulfurospirillum sp. SL2-1 1 species 0 1986224 1 0 220622 species 419 Sulfurospirillum sp. JPD-1 752 Sulfurospirillum sp. UCH001 1 species 1581011 0 13156 no rank 2321108 0 5 28196 0 genus 55 3 Arcobacter 1 6930 1 0 28197 species 4240 Arcobacter butzleri 1 species 0 28199 2635 Arcobacter nitrofigilis no rank 0 2321207 1 3126 1 species 944547 0 3126 Arcobacter sp. L 0 2321187 genus 1 3100 0 1850254 species 1 Arcobacter sp. LPB0137 3100 family 0 2771471 4 1712 180 1 286130 0 genus Sulfuricurvum kujiense 180 0 148813 species 1 1 1532 Sulfurimonas 3 genus 4 202746 0 893 Sulfurimonas denitrificans 1 39766 0 species Sulfurimonas autotrophica 635 202747 0 species 1 Nautiliales 1 1524 0 235899 7 order 6 224467 0 family 6 3 Nautiliaceae 1149 1 2 0 191291 6 genus 1 1143 Nautilia 1 244787 0 species 1137 Nautilia profundicola 368 2 0 2795691 family 2 0 269258 genus 6 368 1 Nitratiruptor no rank 2624044 0 1 362 Nitratiruptor sp. SB155-2 362 species 0 387092 1 Deltaproteobacteria 1 47041 0 28221 47 class 130 order 9 213462 0 11 Syntrophobacterales 1064 1 814 1 Syntrophaceae 7 5 family 213468 0 2 genus 4 0 43773 1 236 Syntrophus species 0 316277 1 Syntrophus aciditrophicus 232 2 2357 0 genus 3 336 1 Desulfomonile Desulfomonile tiedjei 333 0 2358 species 1 Desulfobacca 237 1 genus 1 60892 0 2 236 Desulfobacca acetoxidans 1 60893 0 species Syntrophobacteraceae 1 241 1 family 213465 0 3 Syntrophobacter 1 240 1 genus 29526 0 2 239 Syntrophobacter fumaroxidans 1 species 119484 0 1949 1 Desulfurellales 6 2 order 213113 0 family 4 0 117942 5 Desulfurellaceae 1 1947 Hippea 1 618 genus 3 84404 0 2 615 Hippea maritima 1 0 84405 species Desulfurella 1325 1 3 genus 33001 0 2 species 33002 0 1 Desulfurella acetivorans 1322 38 29 0 216 order 24305 1 Myxococcales suborder 0 80811 26 14037 Anaeromyxobacteraceae 1 2489 1524215 0 family 10 5 genus 31 161492 0 4 Anaeromyxobacter 1 2479 1392 2 no rank 0 2620896 447217 0 species 1 Anaeromyxobacter sp. K 642 1 404589 0 species 750 Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter dehalogenans 1056 species 0 161493 1 4816 1 Archangiaceae 9 39 0 family 46 2318 1 Archangium 2 3 genus 47 0 Archangium gephyra 2315 0 48 species 1 2 0 40 2 genus 707 1 Stigmatella 705 Stigmatella aurantiaca 1 41 0 species Melittangium 751 1 genus 8 0 44 2 743 Melittangium boletus 1 83453 0 species 2 genus 6 0 42 994 1 Cystobacter 0 43 species 1 Cystobacter fuscus 988 Vulgatibacteraceae 574 1 1524213 0 family 1 3 2 6 genus 1524214 0 573 1 Vulgatibacter Vulgatibacter incomptus 567 0 1391653 species 1 6158 1 Myxococcaceae 9 31 0 family 22 genus 116 32 0 5 Myxococcus 1 4315 0 34 species 1 Myxococcus xanthus 670 1 0 1297742 species 882 Myxococcus hansupus Myxococcus stipitatus 808 83455 0 species 1 species 33 0 1 Myxococcus fulvus 1839 Corallococcus 1821 1 genus 18 83461 0 3 1 species 0 35 792 Myxococcus macrosporus 1 0 184914 species 1011 Corallococcus coralloides 8048 8 suborder 80812 0 Polyangiaceae 6628 1 14 family 0 49 5 0 39643 genus 7 2 Sorangium 1 5250 1 56 0 species 5243 Sorangium cellulosum 2 4 genus 50 0 1 1364 Chondromyces 52 0 species 1 Chondromyces crocatus 1360 1420 1 Sandaracinaceae 3 family 4 0 1055686 1 1416 Sandaracinus 2 7 genus 0 1055688 1409 Sandaracinus amylolyticus 1 species 927083 0 2004 3 suborder 0 224462 Kofleriaceae 1 2004 19 family 0 224464 3 9 genus 162027 0 2 Haliangium 1 1985 Haliangium ochraceum 1976 80816 0 species 1 6307 1 Desulfovibrionales 26 61 order 0 213115 4 family 4 213116 0 1 496 Desulfomicrobiaceae Desulfomicrobium 492 1 0 898 genus 5 3 Desulfomicrobium baculatum 276 species 0 899 1 Desulfomicrobium orale 211 0 132132 species 1 2 family 213117 0 3 Desulfohalobiaceae 181 1 179 1 Desulfohalobium 2 4 genus 45662 0 1 0 45663 species 175 Desulfohalobium retbaense 28 family 194924 0 18 Desulfovibrionaceae 1 5569 477 1 genus 2794998 0 477 Desulfovibrio salexigens 1 species 880 0 4 genus 41707 0 2 Lawsonia 1126 1 0 29546 species 1 Lawsonia intracellularis 1122 Pseudodesulfovibrio 1 765 0 2035811 genus 3 4 256 Pseudodesulfovibrio indicus 1 0 1716143 species 1 species 57320 0 183 Pseudodesulfovibrio profundus 182210 0 species 1 Pseudodesulfovibrio aespoeensis 323 872 0 28 genus 9 Desulfovibrio 2896 1 species 44742 0 1 Desulfovibrio fairfieldensis 197 Desulfovibrio piger 172 species 901 0 1 1 876 0 species 505 Desulfovibrio desulfuricans 0 881 species 1 Desulfovibrio vulgaris 913 1 no rank 0 2593640 155 631220 0 species 1 Desulfovibrio sp. G11 155 0 58180 species 1 Desulfovibrio alaskensis 249 565 Desulfovibrio magneticus 1 184917 0 species Candidatus Desulfovibrio trichonymphae 112 1725232 0 species 1 1 2582840 0 genus 277 873 0 species 1 Desulfovibrio africanus 277 0 69541 order 72 24 Desulfuromonadales 7267 1 9 0 213421 family 23 2266 1 Desulfuromonadaceae 1143 1 Pelobacter 5 18 0 genus 22 246 Pelobacter carbinolicus 1 species 0 19 0 29543 species 1 Pelobacter propionicus 298 Pelobacter acetylenicus 298 species 0 29542 1 2620299 0 no rank 1 279 1 1842532 0 species 279 Pelobacter sp. SFB93 0 890 7 genus 3 Desulfuromonas 1100 1 1 0 1603606 species 734 Desulfuromonas soudanensis 359 1 no rank 0 2614637 1 0 1823759 species 359 Desulfuromonas sp. DDH964 14 family 29 0 213422 1 4929 Geobacteraceae genus 15 0 392332 2 Geoalkalibacter 337 1 1 species 0 483547 322 Geoalkalibacter subterraneus Geobacter 4563 1 genus 62 28231 0 11 819 2 0 2627627 no rank 1 443143 0 species 489 Geobacter sp. M18 0 443144 species 1 Geobacter sp. M21 330 1 0 28232 species 689 Geobacter metallireducens Geobacter daltonii 310 1203471 0 species 1 species 345632 0 1 Geobacter pickeringii 328 1 313985 0 species 288 Geobacter lovleyi 225194 0 species 1 Geobacter bemidjiensis 346 species 351604 0 1 Geobacter uraniireducens 1260 231 Geobacter anodireducens 1 1340425 0 species Geobacter sulfurreducens 230 species 35554 0 1 Desulfarculales 1 430 453227 0 4 order 4 Desulfarculaceae 1 426 family 13 453228 0 3 Desulfarculus 413 1 453229 0 genus 1 2 1 species 453230 0 412 Desulfarculus baarsii 213118 0 47 order 20 Desulfobacterales 5672 1 1 4070 Desulfobacteraceae 10 21 family 213119 0 Desulfobacterium 1 415 genus 7 2295 0 2 1 species 2296 0 408 Desulfobacterium autotrophicum 0 896 1 genus 3 Desulfococcus 1 731 181663 0 species 1 Desulfococcus oleovorans 436 1 0 897 species 294 Desulfococcus multivorans 1 1528 Desulfatibacillum 2 0 218207 genus 5 Desulfatibacillum alkenivorans 1523 species 259354 0 1 28222 0 genus 2 2 Desulfobacula 1 1375 28223 0 species 1 Desulfobacula toluolica 1373 1555 1 Desulfobulbaceae 9 0 213121 family 12 1 248 Desulfobulbus 2 893 0 genus 1 1 0 1986146 species 247 Desulfobulbus sp. ORNL Desulfotalea 1 527 genus 13 109168 0 2 1 species 84980 0 514 Desulfotalea psychrophila 249 1 Desulfurivibrio 2 genus 1 427922 0 Desulfurivibrio alkaliphilus 248 0 427923 species 1 1 519 Desulfocapsa 2 0 53318 3 genus 0 65555 species 1 Desulfocapsa sulfexigens 516 0 1783270 clade 373 225710 phylum 0 142182 8 1764 9 class 0 219685 8 Gemmatimonadetes 1764 1 7 15 order 219686 0 1 1755 Gemmatimonadales Gemmatimonadaceae 1 1740 219687 0 family 8 6 Gemmatirosa 1 1026 0 1706036 10 genus 2 Gemmatirosa kalamazoonesis 1016 861299 0 species 1 Gemmatimonas 706 1 8 genus 173479 0 3 1 0 1379270 species 336 Gemmatimonas phototrophica 1 species 173480 0 362 Gemmatimonas aurantiaca 456828 0 phylum 2 576 Candidatus Cloacimonas 1 576 456826 0 genus 3 2 456827 0 species 1 Candidatus Cloacimonas acidaminovorans 573 521 3 0 65842 phylum 3 class 0 204430 521 3 0 218872 order 2 521 1 Fibrobacterales 2 204431 0 family 519 519 1 Fibrobacter 2 832 0 2 genus 517 Fibrobacter succinogenes 1 species 0 833 68336 0 clade 360 222849 8 0 1134404 phylum 2147 0 795747 class 5 8 Ignavibacteria 1 2147 14 order 0 795748 7 Ignavibacteriales 2142 1 3 3 family 1334117 0 425 1 Melioribacteraceae 2 0 1134403 genus 2 1 422 Melioribacter 1 1134405 0 species 420 Melioribacter roseus family 4 795749 0 3 Ignavibacteriaceae 1703 1 2 0 795750 genus 6 1699 1 Ignavibacterium 1 591197 0 species 1693 Ignavibacterium album 4243 phylum 1090 0 22 Chlorobia 4243 1 191410 0 class 33 22 21 order 25 191411 0 4210 1 Chlorobiales 191412 0 51 family 20 Chlorobiaceae 1 4185 5 1101 0 genus 44 1 857 Prosthecochloris 3 no rank 2632826 0 610 Prosthecochloris sp. HL-130-GSB 214 0 1974213 species 1 1868325 0 species 1 Prosthecochloris sp. CIB 2401 216 0 281093 species 1 Prosthecochloris sp. GSB1 180 Prosthecochloris aestuarii 203 species 1102 0 1 1 449 Chloroherpeton 2 100715 0 1 genus 0 100716 species 1 Chloroherpeton thalassium 448 8 0 274493 no rank 2109 424 1 Pelodictyon 3 3 genus 0 1099 Pelodictyon luteolum 158 species 1100 0 1 34090 0 species 1 Pelodictyon phaeoclathratiforme 263 genus 39 1091 0 5 Chlorobium 1 1685 333 Chlorobium chlorochromatii 1 species 0 337090 Chlorobium phaeobacteroides 803 species 0 1096 1 species 0 1094 1 Chlorobium phaeovibrioides 161 349 Chlorobium limicola 1 0 1092 species 0 256319 genus 60 4 Chlorobaculum 1 719 1 274537 0 species 242 Chlorobaculum limnaeum Chlorobaculum parvum 224 0 274539 species 1 193 Chlorobaculum tepidum 1 0 1097 species 330 phylum 54 0 976 216459 1 Bacteroidetes Sphingobacteriia 1 13913 117747 0 class 12 24 Sphingobacteriales 1 13901 27 order 0 200666 23 Sphingobacteriaceae 1 13874 0 84566 family 61 22 0 1649482 2 genus 2 Pseudopedobacter 1091 1 1 species 151895 0 1089 Pseudopedobacter saltans Pedobacter 4695 1 43 genus 84567 0 6 1 2628915 0 no rank 1057 Pedobacter sp. PACM 27299 1057 1727164 0 species 1 430522 0 species 1 Pedobacter steynii 829 363852 0 species 1 Pedobacter ginsengisoli 943 species 188932 0 1 Pedobacter cryoconitis 1044 1 species 0 984 779 Pedobacter heparinus 1 no rank 0 84568 1727 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1727 0 1986952 species 1 0 423349 21 genus 4 Mucilaginibacter 1864 1 438 no rank 0 2617802 1 Mucilaginibacter sp. PAMC 26640 438 1300914 0 species 1 0 1550579 species 1 Mucilaginibacter gotjawali 751 Mucilaginibacter sp. BJC16-A31 654 1234841 0 species 1 Sphingobacterium 1 3353 28453 0 16 genus 6 Sphingobacterium mizutaii 634 1010 0 species 1 2703 0 2609468 no rank 4 922 Sphingobacterium sp. ML3W 1 species 0 1538644 Sphingobacterium sp. 21 513 743722 0 species 1 species 0 2003121 1 Sphingobacterium sp. G1-14 638 1 species 0 1933220 630 Sphingobacterium sp. B29 1 1083 Solitalea 2 8 genus 0 929509 species 0 995 1 Solitalea canadensis 1075 Bacteroidia 17484 1 class 33 200643 0 65 Marinilabiliales 3702 1 17 order 1970189 0 12 4 family 0 558415 3 Marinilabiliaceae 757 1 Alkalitalea 1 753 10 genus 0 1193324 2 1 889453 0 species 743 Alkalitalea saponilacus 1 1204 Marinifilaceae 2 9 family 0 1573805 1195 1 genus 0 2060722 0 1717717 species 1 Marinifilaceae bacterium SPP2 1195 Salinivirgaceae 790 1 family 4 1970190 0 3 2 genus 2 0 1970191 1 786 Salinivirga 784 Salinivirga cyanobacteriivorans 1 0 1307839 species Prolixibacteraceae 934 1 family 5 1471398 0 3 Draconibacterium 1 929 0 1471399 genus 19 2 species 1168034 0 1 Draconibacterium orientale 910 Bacteroidales 1 13749 0 171549 61 order 52 0 815 family 15 11 Bacteroidaceae 3555 1 Bacteroides 3540 1 0 816 genus 43 10 Bacteroides ovatus 391 species 28116 0 1 1 species 817 0 726 Bacteroides fragilis species 0 47678 1 Bacteroides caccae 348 Bacteroides heparinolyticus 250 0 28113 species 1 1 species 0 818 505 Bacteroides thetaiotaomicron Bacteroides zoogleoformans 219 species 28119 0 1 1 species 246787 0 485 Bacteroides cellulosilyticus Bacteroides helcogenes 251 0 290053 species 1 1 species 0 1796613 322 Bacteroides caecimuris 0 171550 family 3 3 Rikenellaceae 1 474 1 239759 0 genus 250 Alistipes finegoldii 250 species 214856 0 1 221 0 1611681 genus 1 221 Mucinivorans hirudinis 1 0 1433126 species 203 2 family 0 2005519 2 0 397864 2 genus 203 1 Barnesiella 397865 0 species 1 Barnesiella viscericola 201 2637 no rank 333046 0 5 genus 909656 0 3 1343 species 357276 0 1 Bacteroides dorei 426 521 Bacteroides salanitronis 1 species 0 376805 396 Bacteroides vulgatus 1 0 821 species 2 4 genus 0 511434 1 1294 Candidatus Azobacteroides 511435 0 species 1 Candidatus Azobacteroides pseudotrichonymphae 1290 1092 family 0 2005520 5 2 genus 5 1784836 0 1 604 Fermentimonas 1562970 0 species 1 Fermentimonas caenicola 599 1 273 Proteiniphilum 2 0 294702 2 genus species 1642647 0 1 Proteiniphilum saccharofermentans 271 0 307628 genus 1 215 species 0 1642646 1 Petrimonas mucosa 215 Odoribacteraceae 339 1 family 1 1853231 0 2 0 283168 genus 1 338 338 Odoribacter splanchnicus 1 species 28118 0 290 1 no rank 0 185291 Bacteroidales bacterium CF 290 0 1400053 species 1 Tannerellaceae 1118 1 2005525 0 family 3 6 Parabacteroides 1 621 375288 0 genus 4 3 1 0 823 species 309 Parabacteroides distasonis 0 2649774 no rank 1 308 1 species 2025876 0 308 Parabacteroides sp. CT06 494 2 0 195950 genus 268 1 0 2620507 no rank 1 species 0 712710 268 Tannerella sp. oral taxon HOT-286 Tannerella forsythia 226 species 0 28112 1 795 0 2005523 family 2 1 795 Paludibacter 2 0 346096 genus 1 Paludibacter propionicigenes 794 0 185300 species 1 Porphyromonadaceae 471 1 0 171551 family 5 3 466 2 0 836 genus 315 Porphyromonas gingivalis 1 species 837 0 1 species 0 28123 151 Porphyromonas asaccharolytica 11 family 9 0 171552 1 2714 Prevotellaceae 838 0 12 genus 10 Prevotella 2705 1 1 species 52227 0 238 Prevotella dentalis 0 839 species 1 Prevotella ruminicola 277 1 589436 0 species 196 Prevotella fusca 1 28132 0 species 227 Prevotella melaninogenica 1 no rank 0 2638335 406 0 652716 species 1 Prevotella sp. oral taxon 299 406 142 Prevotella enoeca 1 76123 0 species 269 Prevotella jejuni 1 0 1177574 species 1 species 0 28129 142 Prevotella denticola Prevotella intermedia 796 0 28131 species 1 Saprospiria 1 1414 0 1937959 1 class 7 Saprospirales 1 1413 4 order 0 1936988 6 family 0 89374 2 496 496 1 Saprospira 2 1007 0 4 genus species 1008 0 1 Saprospira grandis 492 Haliscomenobacteraceae 1 913 1937961 0 family 2 3 Haliscomenobacter 1 911 0 2349 10 genus 2 1 0 2350 species 901 Haliscomenobacter hydrossis 61 class 41 0 768503 27347 1 Cytophagia 27306 1 Cytophagales 60 768507 0 order 120 3 family 2 0 1853234 973 1 Persicobacteraceae Persicobacter 971 1 6 genus 59740 0 2 1 no rank 0 2664020 965 1 species 0 1085624 965 Persicobacter sp. JZB09 16 family 0 1853232 16 Hymenobacteraceae 5862 1 Rufibacter 1 1468 0 1379908 genus 15 4 897 0 2639626 no rank 2 427 Rufibacter sp. DG15C 1 1379909 0 species Rufibacter sp. DG31D 470 1379910 0 species 1 1 512763 0 species 556 Rufibacter tibetensis Pontibacter 759 1 10 genus 323449 0 3 346 Pontibacter akesuensis 1 388950 0 species 403 Pontibacter korlensis 1 0 400092 species 38 genus 89966 0 8 Hymenobacter 3619 1 1 0 1411621 species 453 Hymenobacter sedentarius Hymenobacter swuensis 423 species 0 1446467 1 no rank 2615202 0 5 2705 491 Hymenobacter sp. APR13 1 species 1356852 0 Hymenobacter sp. DG25B 287 species 0 1385664 1 species 1484116 0 1 Hymenobacter sp. PAMC 26554 921 species 0 1484118 1 Hymenobacter sp. PAMC 26628 740 266 Hymenobacter sp. DG25A 1 species 0 1385663 1518 2 family 0 2762301 Marivirga 1518 1 0 869806 12 genus 2 Marivirga tractuosa 1506 0 1006 species 1 Flammeovirgaceae 6175 1 family 8 0 200667 4 0 340671 no rank 1 4112 1 1257021 0 species 4112 Flammeovirgaceae bacterium 311 2 genus 13 59739 0 2055 1 Flammeovirga 1 no rank 0 2637820 2042 1 1191459 0 species 2042 Flammeovirga sp. MY04 Bernardetiaceae 2192 1 0 1937968 family 11 3 2181 1 Bernardetia 2 0 1937972 14 genus Bernardetia litoralis 2167 999 0 species 1 787 1 Amoebophilaceae 5 1501348 0 15 family 2 273135 0 genus 3 1 274 Candidatus Cardinium 271 1 0 2641185 no rank species 249402 0 1 Cardinium endosymbiont of Encarsia pergandiella 271 1 498 Candidatus Amoebophilus 2 281119 0 genus 6 species 281120 0 1 Candidatus Amoebophilus asiaticus 492 16 8 family 89373 0 5075 1 Cytophagaceae 2 978 0 genus 31 1 818 Cytophaga 787 Cytophaga hutchinsonii 1 species 0 985 Leadbetterella 1 573 0 319458 genus 8 2 1 0 316068 species 565 Leadbetterella byssophila Fibrella 1 327 4 genus 861914 0 2 323 1 no rank 0 2620963 1 1834519 0 species 323 Fibrella sp. ES10-3-2-2 genus 3 120831 0 2 Dyadobacter 410 1 Dyadobacter fermentans 407 species 94254 0 1 891 genus 0 105 1 1 0 106 species 891 Runella slithyformis Spirosoma 1 2048 107 0 10 genus 6 Spirosoma rigui 305 species 0 564064 1 species 0 2057025 1 Spirosoma sp. HA7 471 Spirosoma aerolatum 439 species 1211326 0 1 407 Spirosoma radiotolerans 1 0 1379870 species 1 1178516 0 species 416 Spirosoma montaniterrae 10 family 0 563798 10 Cyclobacteriaceae 4604 1 232244 0 13 genus 2 Belliella 1 1298 1285 Belliella baltica 1 species 0 232259 Algoriphagus 737 1 4 genus 0 246875 2 Algoriphagus sp. M8-2 733 species 0 1727163 1 2 0 390846 genus 18 513 1 Echinicola 0 390884 species 1 Echinicola vietnamensis 495 3 genus 11 0 68288 2046 1 Cyclobacterium 104 0 species 1 Cyclobacterium marinum 935 1100 Cyclobacterium amurskyense 1 species 0 320787 order 16 0 1100069 6 Bacteroidetes Order II. Incertae sedis 1815 1 1799 1 Rhodothermaceae 5 family 15 0 563843 Rhodothermus 1 557 genus 9 29548 0 2 548 Rhodothermus marinus 1 species 0 29549 0 1196022 no rank 1 719 Rhodothermaceae bacterium RA 719 species 1779382 0 1 508 1 146918 0 genus 0 146919 species 1 Salinibacter ruber 508 1 4343 Chitinophagia 16 0 1853228 class 10 4333 1 Chitinophagales 15 0 1853229 8 order 4325 1 Chitinophagaceae 14 42 family 0 563835 3 genus 5 79328 0 1 963 Chitinophaga species 0 79329 1 Chitinophaga pinensis 470 488 Chitinophagaceae bacterium 13 1 species 0 2029983 genus 398041 0 1 723 1 1492898 0 species 723 Flavisolibacter tropicus 1769012 0 genus 2 2 Arachidicoccus 603 1 no rank 2636138 0 1 601 1850526 0 species 1 Arachidicoccus sp. BS20 601 818 1 Niastella 2 genus 4 0 354354 1 species 0 354356 814 Niastella koreensis 379899 0 3 genus 3 Niabella 1 693 Niabella ginsenosidivorans 370 species 1176587 0 1 species 0 446683 1 Niabella soli 320 Filimonas 483 1 0 649460 genus 1 2 1 477680 0 species 482 Filimonas lacunae 150 117743 0 138 class 1 150089 Flavobacteriia 200644 0 order 161 149 Flavobacteriales 149951 1 859 1 Ichthyobacteriaceae 3 0 1755828 2 family 1 857 Ichthyobacterium 2 genus 19 0 1755829 1 242600 0 species 838 Ichthyobacterium seriolicida 1040 2 family 0 1853230 Fluviicola 1 1040 0 332102 genus 8 2 191579 0 species 1 Fluviicola taffensis 1032 18902 21 family 2762318 0 2 28250 0 genus 1 626 1 Ornithobacterium 625 Ornithobacterium rhinotracheale 1 28251 0 species 6639 1 Elizabethkingia 6 308865 0 genus 57 1470 Elizabethkingia miricola 1 species 0 172045 Elizabethkingia anophelis 2233 1117645 0 species 1 1 1756149 0 species 1071 Elizabethkingia genomosp. 3 1 238 0 species 915 Elizabethkingia meningoseptica Elizabethkingia genomosp. 4 893 1756150 0 species 1 9411 10 no rank 0 2782232 0 2782228 genus 1 507 507 Chryseobacterium taklimakanense 1 536441 0 species genus 47 59732 0 9 Chryseobacterium 8904 1 734 Chryseobacterium gallinarum 1 0 1324352 species Chryseobacterium piperi 1090 species 0 558152 1 Chryseobacterium glaciei 1800 0 1685010 species 1 no rank 0 2593645 3 3051 1 1721091 0 species 901 Chryseobacterium sp. IHB B 17019 0 2015076 species 1 Chryseobacterium sp. T16E-39 1105 1045 Chryseobacterium sp. StRB126 1 species 0 878220 species 0 1265445 1 Chryseobacterium camelliae 374 Chryseobacterium indologenes 1808 0 253 species 1 800 0 1013 genus 1 1 species 1014 0 800 Weeksella virosa 1 1426 Riemerella 2 1 genus 34084 0 Riemerella anatipestifer 1425 34085 0 species 1 1 6459 Blattabacteriaceae 10 39782 0 9 family genus 41 0 34098 9 Blattabacterium 6450 1 0 1653831 species 1 Blattabacterium cuenoti 811 831 Blattabacterium punctulatus 1 0 164514 species 4767 6 no rank 0 2647581 species 0 367488 1 Blattabacterium sp. (Periplaneta americana) 732 Blattabacterium sp. (Blaberus giganteus) 943 species 0 1186051 1 species 624186 0 1 Blattabacterium sp. (Blattella germanica) 815 674 Blattabacterium sp. (Mastotermes darwiniensis) 1 species 39768 0 Blattabacterium sp. (Nauphoeta cinerea) 910 species 1316444 0 1 0 367806 species 1 Blattabacterium sp. (Blatta orientalis) 693 119953 1 Flavobacteriaceae 105 580 family 49546 0 3 286104 0 17 genus 1 3988 Winogradskyella 3971 no rank 0 2615021 2 2339 Winogradskyella sp. PG-2 1 species 0 754409 1 species 1936080 0 1632 Winogradskyella sp. J14-2 2563 2 no rank 0 61432 1 species 1150389 0 2143 Flavobacteriaceae bacterium UJ101 1 species 531844 0 420 Flavobacteriaceae bacterium 3519-10 15 59 genus 1016 0 1 8159 Capnocytophaga 389 Capnocytophaga gingivalis 1 1017 0 species 384 Capnocytophaga leadbetteri 1 327575 0 species 0 2640652 no rank 6 3121 1316593 0 species 1 Capnocytophaga sp. oral taxon 864 438 638 Capnocytophaga sp. H2931 1 1945657 0 species 1 species 1945658 0 611 Capnocytophaga sp. H4358 1 0 1705617 species 373 Capnocytophaga sp. oral taxon 323 Capnocytophaga sp. oral taxon 878 574 species 1316596 0 1 Capnocytophaga sp. ChDC OS43 487 209053 0 species 1 426 Capnocytophaga ochracea 1 species 0 1018 1 28188 0 species 983 Capnocytophaga canimorsus 1 1019 0 species 1090 Capnocytophaga sputigena Capnocytophaga stomatis 668 1848904 0 species 1 1 species 28189 0 759 Capnocytophaga cynodegmi 1 species 45243 0 280 Capnocytophaga haemolytica 4 28 genus 326319 0 3913 1 Dokdonia no rank 2615033 0 2 2462 1 species 313590 0 1214 Dokdonia sp. MED134 1 species 0 983548 1248 Dokdonia sp. 4H-3-7-5 326320 0 species 1 Dokdonia donghaensis 1423 1833 0 1204360 genus 1 1 762954 0 species 1833 Siansivirga zeaxanthinifaciens Wenyingzhuangia 1858 1 1 genus 1518147 0 2 1790137 0 species 1 Wenyingzhuangia fucanilytica 1857 1772 1 genus 0 417127 Zunongwangia profunda 1772 species 398743 0 1 1604 1 Croceibacter 2 3 genus 216431 0 1 species 0 313588 1601 Croceibacter atlanticus Cellulophaga 1 6355 0 104264 genus 40 4 2180 Cellulophaga lytica 1 979 0 species 1 species 59600 0 2047 Cellulophaga algicola species 0 76594 1 Cellulophaga baltica 2088 Formosa 1 2733 genus 7 225842 0 3 2726 0 2644710 no rank 2 Formosa sp. Hel3_A1_48 1539 0 1336795 species 1 1187 Formosa sp. Hel1_33_131 1 1336794 0 species Robiginitalea 284 1 1 genus 0 252306 2 Robiginitalea biformata 283 252307 0 species 1 Myroides 3706 1 82 genus 0 76831 5 Myroides odoratimimus 958 76832 0 species 1 1 species 480520 0 885 Myroides profundi 1781 2 no rank 0 2642485 1583100 0 species 1 Myroides sp. A21 863 918 Myroides sp. ZB35 1 0 1458492 species 1 genus 0 261827 2319 0 1736674 species 1 Algibacter alginicilyticus 2319 Muricauda 1298 1 12 genus 111500 0 3 1 111501 0 species 847 Muricauda ruestringensis 0 516051 species 1 Muricauda lutaonensis 439 336276 0 1 genus 2 Olleya 1 1864 1 0 2615019 no rank 1863 1863 Olleya sp. Bg11-27 1 2058135 0 species genus 0 83612 1 1484 1484 Psychroflexus torquis 1 species 0 57029 27 genus 0 104267 5 Tenacibaculum 1 8681 2421 Tenacibaculum todarodis 1 species 1850252 0 1 0 584609 species 2683 Tenacibaculum jejuense 1 0 107401 species 1759 Tenacibaculum maritimum Tenacibaculum dicentrarchi 1791 species 0 669041 1 1430 0 393005 genus 1 1430 Tamlana sp. UJ94 1 0 2069432 species 2 1 genus 0 153265 1 1075 Aequorivita Aequorivita sublithincola 1074 0 101385 species 1 0 237 39 genus 9 Flavobacterium 1 14555 3448 Flavobacterium johnsoniae 1 986 0 species 1 0 96345 species 1553 Flavobacterium psychrophilum 928 Flavobacterium crassostreae 1 1763534 0 species Flavobacterium branchiophilum 1322 species 55197 0 1 1232 Flavobacterium gilvum 1 species 1492737 0 2672 Flavobacterium columnare 1 996 0 species species 0 312277 1 Flavobacterium indicum 2150 Flavobacterium commune 1211 species 1306519 0 1 1 genus 0 1209327 1720 1 1803846 0 species 1720 Flavivirga eckloniae Lutibacter 2819 1 1 genus 358023 0 2 species 1622118 0 1 Lutibacter profundi 2818 1 0 389486 genus 703 703 1 no rank 2648869 0 Sediminicola sp. YIK13 703 species 0 1453352 1 1 6513 Lacinutrix 4 291183 0 58 genus 4330 2 no rank 0 2647285 2201 Lacinutrix sp. Bg11-31 1 species 2057808 0 2129 Lacinutrix sp. 5H-3-7-4 1 species 0 983544 1 species 1486034 0 2125 Lacinutrix venerupis 0 178469 genus 1 933 1 616991 0 species 933 Arenibacter algicola Seonamhaeicola 1 2144 1649495 0 genus 1 2 2143 1 0 2622645 no rank 1 species 0 1936081 2143 Seonamhaeicola sp. S2-3 1 0 112040 genus 614 1 63186 0 species 614 Zobellia galactanivorans 0 1176327 genus 1 754 1 2636237 0 no rank 754 species 2094025 0 1 Aureitalea sp. RR4-38 754 genus 0 2700084 1 2872 1 species 1850246 0 2872 Lutibacter sp. LPB0138 1 13126 Polaribacter 6 52959 0 genus 85 2990 Polaribacter vadi 1 0 1774273 species 2973 Polaribacter reichenbachii 1 species 996801 0 7078 3 0 196858 no rank 2060 Polaribacter sp. ALD11 1 0 2058137 species Polaribacter sp. MED152 2554 species 313598 0 1 2464 Polaribacter sp. BM10 1 species 1529069 0 5 19 genus 0 292691 3525 1 Gramella 937 Gramella sp. LPB0144 1 0 1913577 species 1185 Gramella forsetii 1 species 0 411153 1 0 1486245 species 604 Gramella flava 780 Gramella sp. SH35 1 species 2126553 0 1292 genus 0 143222 1 1292 1 0 2633436 no rank Salegentibacter sp. T436 1292 species 1729720 0 1 1 5766 Maribacter 5 252356 0 55 genus 4877 3 no rank 0 2615042 1 1836467 0 species 1567 Maribacter sp. T28 1 1644130 0 species 1900 Maribacter sp. 1_2014MBL_MicDiv 0 313603 species 1 Maribacter sp. HTCC2170 1410 Maribacter cobaltidurans 834 1178778 0 species 1 5 156 genus 363408 0 5118 1 Nonlabens 1235 Nonlabens dokdonensis 1 species 328515 0 1 319236 0 species 1269 Nonlabens sediminis 2 2615035 0 no rank 2458 1 0 1476901 species 1314 Nonlabens sp. MIC269 species 2058134 0 1 Nonlabens sp. MB-3u-79 1144 0 1333713 family 2 755 755 1 Owenweeksia 2 genus 16 267986 0 0 253245 species 1 Owenweeksia hongkongensis 739 no rank 313602 0 4 1807 Candidatus Walczuchella 331 1 2 genus 0 1940138 2 1 species 1415657 0 329 Candidatus Walczuchella monophlebidarum genus 3 0 336809 2 Candidatus Sulcia 1476 1 1473 Candidatus Sulcia muelleri 1 0 336810 species 1 family 246874 0 15 Cryomorphaceae 1012 10 phylum 0 508458 0 649775 class 2 10 Synergistia 1 1012 Synergistales 1010 1 order 8 0 649776 9 Synergistaceae 1002 1 649777 0 family 3 8 226 genus 0 336260 1 1 336261 0 species 226 Thermovirga lienii 508459 0 genus 1 2 Cloacibacillus 1 212 Cloacibacillus porcorum 211 1197717 0 species 1 187 genus 0 49894 1 187 Acetomicrobium mobile 1 species 0 97477 Aminobacterium 217 1 2 genus 0 81466 2 species 81468 0 1 Aminobacterium colombiense 215 157 1 genus 0 81461 1 81462 0 species 157 Thermanaerovibrio acidaminovorans 20639 96 0 1783257 clade phylum 0 204428 24 4533 1 4533 Chlamydiia 24 0 204429 20 class 3215 1 Chlamydiales 14 order 12 51291 0 1 3203 Chlamydiaceae 13 6 family 809 0 no rank 0 1113537 12 3197 12 0 810 genus 41 1 3197 Chlamydia species 0 85991 1 Chlamydia pecorum 397 species 0 83559 1 Chlamydia suis 141 0 1457141 species 1 Chlamydia avium 295 Chlamydia felis 292 0 83556 species 1 species 0 83554 1 Chlamydia psittaci 436 Chlamydia pneumoniae 335 0 83558 species 1 Chlamydia gallinacea 274 1457153 0 species 1 83560 0 species 1 Chlamydia muridarum 224 813 0 species 1 Chlamydia trachomatis 247 1 species 83555 0 237 Chlamydia abortus Chlamydia caviae 278 83557 0 species 1 1963360 0 order 2 9 Parachlamydiales 1298 1 813 family 0 92713 4 2 0 83551 genus 3 1 475 Parachlamydia Parachlamydia acanthamoebae 472 0 83552 species 1 Candidatus Protochlamydia 338 1 genus 2 282132 0 2 species 389348 0 1 Candidatus Protochlamydia naegleriophila 336 2 0 92712 family 269 2 2 genus 34093 0 269 1 Simkania 1 0 83561 species 267 Simkania negevensis 214 0 92714 family 2 2 0 71666 1 genus 1 214 Waddlia 213 Waddlia chondrophila 1 0 71667 species phylum 0 134625 4 544 544 1 Kiritimatiellae 4 0 1921781 class 1 Kiritimatiellales 1 543 order 3 1921782 0 3 540 1 Kiritimatiellaceae 2 1921783 0 family 7 1 0 1921784 genus 533 533 Kiritimatiella glycovorans 1 0 1307763 species 0 203682 phylum 37 9615 3 0 2517206 class 1726 5 order 0 1127829 3 Candidatus Brocadiales 1 1726 2 1127830 0 family 1 1721 1 Candidatus Brocadiaceae 1720 0 380738 genus 1 1 species 0 174633 1720 Candidatus Kuenenia stuttgartiensis 6583 1 Planctomycetia 27 class 10 203683 0 1709 7 0 2691356 order 7 family 22 0 1763524 1709 1 Isosphaeraceae 2 genus 4 1763521 0 1 578 Paludisphaera 1387353 0 species 1 Paludisphaera borealis 574 2 127 0 genus 15 1 519 Isosphaera 1 species 0 128 504 Isosphaera pallida 1 590 Singulisphaera 2 genus 13 0 466152 Singulisphaera acidiphila 577 species 466153 0 1 Planctomycetales 2772 1 0 112 order 82 11 10 0 126 26 family 1 2690 Planctomycetaceae Rubinisphaera 508 1 14 genus 0 1649490 2 494 Rubinisphaera brasiliensis 1 species 119 0 1308 1 Planctomyces 3 genus 14 118 0 2 no rank 0 2648843 1294 1 species 0 1632864 569 Planctomyces sp. SH-PL14 1 species 0 1636152 725 Planctomyces sp. SH-PL62 1 genus 0 1649480 2 Planctopirus 1 293 292 Planctopirus limnophila 1 0 120 species Fuerstia 1 555 genus 1 1936111 0 2 0 1891926 species 1 Fuerstia marisgermanicae 554 597 3 order 0 2691355 Gemmataceae 1 597 family 1 1914233 0 3 1 596 Gemmata 2 113 0 26 genus 0 2622970 no rank 1 570 570 Gemmata sp. SH-PL17 1 0 1630693 species 5 order 0 2691354 1495 0 2691358 family 1 282 1 0 1676125 genus 282 282 Thermogutta terrifontis 1 0 1331910 species 1213 family 0 2691357 4 1 615 Rhodopirellula 2 15 genus 0 265488 600 Rhodopirellula baltica 1 species 265606 0 Pirellula 1 598 genus 3 0 123 2 595 Pirellula staleyi 1 species 0 125 1 1306 Phycisphaerae 7 0 666505 7 class order 10 0 666506 4 Phycisphaerales 807 1 3 0 666507 family 3 1 797 Phycisphaeraceae genus 4 666508 0 2 Phycisphaera 1 794 790 Phycisphaera mikurensis 1 0 547188 species 492 2 order 0 2483366 492 0 2483367 family 2 0 2483368 genus 2 492 1 species 1941349 0 228 Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerae bacterium L21-RPul-D3 264 1940790 0 species 1 256845 0 phylum 3 363 3 1313211 0 class 9 1 363 Lentisphaeria 1 354 Victivallales 2 8 order 0 278082 0 1674876 no rank 1 346 species 0 2094242 1 Victivallales bacterium CCUG 44730 346 phylum 4 0 74201 28 Verrucomicrobia 5584 1 2 0 134549 class 132 Candidatus Xiphinematobacter 132 1 9 genus 0 134550 2 123 0 2648876 no rank 1 123 Candidatus Xiphinematobacter sp. Idaho Grape 1 species 0 1704307 910 2 417295 0 no rank 382 Verrucomicrobia bacterium IMCC26134 1 species 1637999 0 1 species 2026799 0 528 Verrucomicrobia bacterium 604 5 203494 0 class order 4 48461 0 5 Verrucomicrobiales 604 1 1647988 0 family 4 4 Akkermansiaceae 1 600 Akkermansia 1 596 7 genus 239934 0 3 1 species 239935 0 260 Akkermansia muciniphila Akkermansia glycaniphila 329 species 1679444 0 1 Opitutae 3121 1 8 class 0 414999 12 4 0 415001 order 4 1290 1 Puniceicoccales 0 415002 family 7 3 Puniceicoccaceae 1286 1 0 442430 6 genus 2 Coraliomargarita 1279 1 Coraliomargarita akajimensis 1273 0 395922 species 1 415000 0 15 order 7 Opitutales 1 1823 family 16 0 134623 6 Opitutaceae 1 1808 2 0 178440 7 genus 508 1 Opitutus Opitutus terrae 501 species 0 107709 1 590 1 Lacunisphaera 2 4 genus 0 1961799 Lacunisphaera limnophila 586 species 0 1838286 1 694 1 no rank 0 278955 694 Opitutaceae bacterium TAV5 1 0 794903 species 1955630 0 class 3 6 Methylacidiphilae 1 813 Methylacidiphilales 810 1 0 717963 order 4 5 4 0 717964 family 2 1 806 Methylacidiphilaceae 804 1 Methylacidiphilum 3 511745 0 2 genus 1 species 0 511746 343 Methylacidiphilum infernorum 1 species 0 591154 459 Methylacidiphilum fumariolicum 469 2498710 0 clade 4 469 4 phylum 67814 0 0 693071 3 class 4 Caldisericia 469 1 1 466 Caldisericales 3 2 order 693072 0 693073 0 family 2 464 1 464 Caldisericum 2 genus 3 693074 0 species 0 693075 1 Caldisericum exile 461 279 phylum 200938 0 5 1 class 0 118001 5 Chrysiogenetes 279 1 4 10 order 0 189769 278 1 Chrysiogenales 268 1 Chrysiogenaceae 3 family 6 0 189770 393029 0 genus 6 2 Desulfurispirillum 1 262 1 species 936456 0 256 Desulfurispirillum indicum 1839 1 Elusimicrobia 8 7 phylum 0 74152 540 1 0 99260 no rank 540 uncultured Termite group 1 bacterium 1 species 0 167965 946 3 0 447830 class 3 order 0 1783344 946 family 1783343 0 3 946 3 1408194 0 genus 1 1 946 Endomicrobium Endomicrobium proavitum 465 1408281 0 species 1 0 1408204 species 1 Candidatus Endomicrobium trichonymphae 480 3 class 3 0 641853 346 1 Elusimicrobia 343 2 0 641854 order 343 2 0 641876 family 2 1 genus 423604 0 343 1 Elusimicrobium Elusimicrobium minutum 342 species 0 423605 1 4125 10 phylum 0 200930 class 21 68337 0 10 Deferribacteres 1 4125 1 4104 Deferribacterales 9 9 order 191393 0 8 191394 0 16 family 1 4095 Deferribacteraceae 781 1 Calditerrivibrio 2 2 genus 545865 0 Calditerrivibrio nitroreducens 779 477976 0 species 1 1947 1 genus 0 53572 Deferribacter desulfuricans 1947 species 0 197162 1 Denitrovibrio 1 515 117999 0 genus 5 2 Denitrovibrio acetiphilus 510 0 118000 species 1 836 1 Flexistipes 2 1 genus 0 2351 species 2352 0 1 Flexistipes sinusarabici 835 35205 25 phylum 0 32066 Fusobacteriia 1 35205 0 203490 class 47 25 Fusobacteriales 35158 1 order 71 0 203491 24 11 0 1129771 21 family 8252 1 Leptotrichiaceae 2 168808 0 4 genus 1108 1 Sneathia 187101 0 species 1 Sneathia amnii 1104 genus 0 34104 1 1408 Streptobacillus moniliformis 1408 34105 0 species 1 5 genus 23 0 32067 4688 1 Leptotrichia 1229 Leptotrichia buccalis 1 species 0 40542 3 2633022 0 no rank 3436 1252 Leptotrichia sp. oral taxon 847 1 0 1785996 species 956 Leptotrichia sp. oral taxon 212 1 species 0 712357 0 712368 species 1 Leptotrichia sp. oral taxon 498 1228 2 genus 1 0 32068 1027 1 Sebaldella 0 826 species 1 Sebaldella termitidis 1026 12 family 14 203492 0 1 26835 Fusobacteriaceae 0 848 genus 90 9 Fusobacterium 1 25808 Fusobacterium varium 3036 0 856 species 1 596 Fusobacterium necrophorum 1 859 0 species 860 0 species 1 Fusobacterium periodonticum 4938 Fusobacterium mortiferum 1547 0 850 species 1 Fusobacterium nucleatum 10337 species 851 0 1 951 Fusobacterium gonidiaformans 1 0 849 species Fusobacterium ulcerans 1589 species 861 0 1 species 0 1583098 1 Fusobacterium hwasookii 2724 1013 1 Ilyobacter 2 167639 0 genus 1 167642 0 species 1 Ilyobacter polytropus 1012 6 0 68297 phylum 1700 4 class 0 203486 6 Dictyoglomia 1700 1 order 8 203487 0 5 Dictyoglomales 1 1696 1 1688 Dictyoglomaceae 4 family 4 0 203488 3 8 genus 0 13 1684 1 Dictyoglomus 14 0 species 1 Dictyoglomus thermophilum 827 Dictyoglomus turgidum 849 species 513050 0 1 13558 phylum 0 200918 44 0 188708 class 33 44 Thermotogae 13558 1 28 order 15 0 2419 7895 1 Thermotogales 1 5246 Fervidobacteriaceae 10 1643950 0 family 13 1 3893 Thermosipho 5 2420 0 genus 32 0 46541 species 1 Thermosipho melanesiensis 943 2 0 2676525 no rank 1794 Thermosipho sp. 1063 877 species 1462747 0 1 1437364 0 species 1 Thermosipho sp. 1070 917 species 2421 0 1 Thermosipho africanus 1124 18 genus 0 2422 4 Fervidobacterium 1340 1 Fervidobacterium pennivorans 510 species 93466 0 1 Fervidobacterium islandicum 232 0 2423 species 1 1 species 2424 0 580 Fervidobacterium nodosum Thermotogaceae 1 2634 family 5 188709 0 17 5 0 1643951 19 genus 1 1201 Pseudothermotoga Pseudothermotoga lettingae 391 species 177758 0 1 1 species 57487 0 73 Pseudothermotoga hypogea 1 species 0 38322 387 Pseudothermotoga elfii species 119394 0 1 Pseudothermotoga thermarum 331 11 2335 0 35 genus 1428 1 Thermotoga species 0 1508420 1 Thermotoga profunda 416 Thermotoga petrophila 94 species 0 93929 1 114 Thermotoga maritima 1 0 2336 species Thermotoga naphthophila 125 93930 0 species 1 1 species 1508419 0 85 Thermotoga caldifontis 0 2631113 no rank 4 412 Thermotoga sp. RQ7 149 species 126738 0 1 0 1157948 species 1 Thermotoga sp. 2812B 91 1 species 126740 0 88 Thermotoga sp. RQ2 1 1157947 0 species 84 Thermotoga sp. Cell2 147 Thermotoga neapolitana 1 species 2337 0 7 0 1643946 order 11 1 1078 Kosmotogales 6 1643948 0 family 2 1067 1 Kosmotogaceae genus 8 0 651456 3 Kosmotoga 1 805 Kosmotoga olearia 326 species 0 651457 1 Kosmotoga pacifica 471 species 0 1330330 1 1 260 Mesotoga 2 3 genus 1184396 0 257 Mesotoga prima 1 species 1184387 0 1643947 0 order 10 8 Petrotogales 1 4552 4542 1643949 0 family 7 2 0 1511648 2 genus 1059 1 Defluviitoga Defluviitoga tunisiensis 1057 species 1006576 0 1 Petrotoga 1 605 28236 0 genus 1 2 69499 0 species 1 Petrotoga mobilis 604 Marinitoga 2878 1 genus 44 0 160798 3 1 species 149715 0 1462 Marinitoga piezophila 1372 0 2640159 no rank 1 1372 Marinitoga sp. 1137 1 1545835 0 species 2950 0 200940 phylum 8 7 class 67799 0 8 Thermodesulfobacteria 2950 1 Thermodesulfobacteriales 1 2943 6 order 0 188710 7 6 0 188711 family 16 1 2937 Thermodesulfobacteriaceae 376 genus 241192 0 1 376 Thermodesulfatator indicus 1 species 0 171695 genus 0 444090 1 452 452 Caldimicrobium thiodismutans 1 species 0 1653476 5 genus 1740 0 3 Thermodesulfobacterium 2093 1 species 1741 0 1 Thermodesulfobacterium commune 605 1 species 0 1295609 1483 Thermodesulfobacterium geofontis 2 0 1930617 phylum 591 2 class 1962850 0 591 2 3 order 0 1962852 591 1 Calditrichales 588 0 1962854 family 1 588 0 187144 genus 1 588 Caldithrix abyssi 1 species 0 187145 0 40117 phylum 14 3005 14 class 28 203693 0 3005 1 Nitrospira 13 189778 0 order 17 1 2977 Nitrospirales 12 11 family 189779 0 1 2960 Nitrospiraceae 1 783 Nitrospira 5 7 genus 1234 0 Nitrospira moscoviensis 296 42253 0 species 1 176 Nitrospira japonica 1 1325564 0 species 184 Nitrospira defluvii 1 0 330214 species Candidatus Nitrospira inopinata 120 0 1715989 species 1 4 7 genus 0 179 652 1 Leptospirillum species group 0 261385 1 180 180 Leptospirillum sp. Group II 'CF-1' 1 species 0 1660083 1 261386 0 species group 160 1 178606 0 species 160 Leptospirillum ferriphilum species group 0 655606 1 305 180 0 species 1 Leptospirillum ferrooxidans 305 2 0 28261 1 genus 1514 1 Thermodesulfovibrio 1 species 28262 0 1513 Thermodesulfovibrio yellowstonii 20 phylum 0 57723 2976 Blastocatellia 1 345 0 1562566 5 class 3 Chloracidobacterium 340 1 0 458032 genus 7 2 1 species 0 458033 333 Chloracidobacterium thermophilum 0 204432 12 class 17 Acidobacteriia 2631 1 Acidobacteriales 2054 1 15 order 0 204433 12 1 2039 Acidobacteriaceae 11 15 family 204434 0 Candidatus Koribacter 277 1 658061 0 genus 5 2 species 0 658062 1 Candidatus Koribacter versatilis 272 0 940557 genus 7 3 Granulicella 693 1 Granulicella tundricola 432 0 940615 species 1 species 0 940614 1 Granulicella mallensis 254 genus 3 33973 0 2 Acidobacterium 1 482 Acidobacterium capsulatum 479 33075 0 species 1 0 392733 2 genus 3 Terriglobus 1 572 1 0 392734 species 221 Terriglobus roseus 1 species 870903 0 349 Terriglobus saanensis 4 332160 0 5 order 1 565 Solibacterales family 6 0 332161 3 Solibacteraceae 560 1 2 genus 2 0 332162 554 1 Candidatus Solibacter species 0 332163 1 Candidatus Solibacter usitatus 552