members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 22335 12798290 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4748 31 66 12716292 0 2 Bacteria 4442 superkingdom 1 1569 0 68297 6 phylum class 6 Dictyoglomia 1 1 1569 0 203486 0 203487 2 1568 5 Dictyoglomales order 1 1566 4 203488 0 1 4 Dictyoglomaceae family Dictyoglomus 3 genus 1 0 13 3 1562 species 1 Dictyoglomus turgidum 756 0 513050 803 14 0 1 Dictyoglomus thermophilum species 1 Acidobacteria 21 phylum 57723 0 7230 1 39 6512 0 204432 17 Acidobacteriia class 1 75 5248 0 204433 order 12 Acidobacteriales 1 5173 75 204434 0 1 11 Acidobacteriaceae family 16 1713 0 940557 genus 3 Granulicella 1 species Granulicella tundricola 1 940615 0 757 940 0 940614 Granulicella mallensis 1 species genus Acidobacterium 2 1 7 1032 0 33973 Acidobacterium capsulatum 1 species 1025 33075 0 Terriglobus 3 genus 1 0 392733 4 1531 726 0 870903 species Terriglobus saanensis 1 0 392734 801 species Terriglobus roseus 1 1 genus Candidatus Koribacter 2 658061 0 822 16 806 0 658062 species 1 Candidatus Koribacter versatilis 1 order Solibacterales 4 1225 23 332160 0 0 332161 10 1202 family 3 Solibacteraceae 1 5 1192 0 332162 Candidatus Solibacter 2 genus 1 1 Candidatus Solibacter usitatus species 0 332163 1187 0 1562566 2 717 3 Blastocatellia class 1 458032 0 715 2 1 genus 2 Chloracidobacterium 458033 0 713 Chloracidobacterium thermophilum 1 species 207 0 2138240 2 phylum 2 class 207 2138243 0 207 2138246 0 2 order family 2 Coprothermobacteraceae 1 1 207 0 2138247 1 genus 206 68335 0 Coprothermobacter proteolyticus 1 species 206 35786 0 1783257 0 31163 clade 95 3 phylum 7495 256845 0 Lentisphaeria 3 class 1 15 7495 0 1313211 2 Victivallales order 1 0 278082 1256 7480 1 no rank 0 1674876 6224 Victivallales bacterium CCUG 44730 1 species 2094242 0 6224 134625 0 677 phylum 5 677 5 1921781 0 1 5 Kiritimatiellae class 4 Kiritimatiellales order 1 0 1921782 2 672 1 family Kiritimatiellaceae 3 670 1 1921783 0 1 genus 2 Kiritimatiella 669 31 1921784 0 0 1307763 638 1 Kiritimatiella glycovorans species 9505 5 74201 0 1 28 Verrucomicrobia phylum class 2 0 134549 80 80 1 134550 0 1 2 Candidatus Xiphinematobacter genus 1 no rank 2648876 0 79 species Candidatus Xiphinematobacter sp. Idaho Grape 1 79 0 1704307 2 no rank 1510 0 417295 756 0 1637999 Verrucomicrobia bacterium IMCC26134 1 species 754 0 2026799 1 Verrucomicrobia bacterium species 4127 35 414999 0 1 class Opitutae 12 415000 0 3694 73 1 Opitutales 7 order 1 Opitutaceae 6 family 134623 0 3621 47 Lacunisphaera 2 genus 1 16 968 0 1961799 952 1838286 0 species 1 Lacunisphaera limnophila genus 2 Opitutus 1 0 178440 12 1037 0 107709 1025 species 1 Opitutus terrae 1 no rank 1569 0 278955 1569 0 794903 species 1 Opitutaceae bacterium TAV5 Puniceicoccales 4 order 1 0 415001 2 398 family Puniceicoccaceae 3 1 0 415002 1 396 395 12 442430 0 1 genus Coraliomargarita 2 species Coraliomargarita akajimensis 1 395922 0 383 1955630 0 412 5 class 1 412 0 717963 order 5 Methylacidiphilales 1 1 family 4 Methylacidiphilaceae 411 2 717964 0 1 genus Methylacidiphilum 3 409 1 511745 0 591154 0 222 species Methylacidiphilum fumariolicum 1 511746 0 186 species 1 Methylacidiphilum infernorum 1 class Verrucomicrobiae 6 203494 0 3371 13 1 order 5 Verrucomicrobiales 48461 0 3358 6 1 Akkermansiaceae 4 family 3352 15 1647988 0 0 239934 3 3337 3 Akkermansia genus 1 239935 0 2196 species 1 Akkermansia muciniphila species 1 Akkermansia glycaniphila 0 1679444 1138 204428 0 2730 phylum 21 class Chlamydiia 21 1 0 204429 7 2730 1771 0 51291 13 order 809 0 1771 1 1 Chlamydiaceae 13 family 0 1113537 1770 12 no rank 131 1770 0 810 genus Chlamydia 12 1 0 83556 214 Chlamydia felis 1 species 813 0 133 1 Chlamydia trachomatis species 105 83559 0 species 1 Chlamydia suis species Chlamydia avium 1 0 1457141 138 0 83560 89 species Chlamydia muridarum 1 Chlamydia abortus 1 species 0 83555 72 Chlamydia pneumoniae 1 species 83558 0 136 Chlamydia gallinacea 1 species 338 0 1457153 146 85991 0 species Chlamydia pecorum 1 species Chlamydia psittaci 1 83554 0 165 species Chlamydia caviae 1 103 83557 0 1 order 7 Parachlamydiales 952 1 1963360 0 580 0 92713 3 family 282132 0 310 1 genus 310 389348 0 1 Candidatus Protochlamydia naegleriophila species 1 2 Parachlamydia genus 83551 0 270 2 Parachlamydia acanthamoebae 1 species 83552 0 268 1 family 0 92714 240 240 71666 0 genus 1 0 71667 240 species Waddlia chondrophila 1 1 2 Simkaniaceae family 131 1 92712 0 130 34093 0 genus 1 130 0 83561 1 Simkania negevensis species 1 phylum 38 Planctomycetes 203682 0 10756 2 class Phycisphaerae 7 1 0 666505 20 2461 666506 0 891 36 1 4 Phycisphaerales order 1 3 Phycisphaeraceae family 666507 0 855 5 666508 0 850 6 1 genus Phycisphaera 2 844 547188 0 species Phycisphaera mikurensis 1 2483366 0 1550 order 2 family 2 1550 0 2483367 1550 2483368 0 2 genus Phycisphaerae bacterium ST-PulAB-D4 1 species 740 1941349 0 species Phycisphaerae bacterium L21-RPul-D3 1 810 1940790 0 Planctomycetia 26 class 1 40 7723 0 203683 1 order 10 Planctomycetales 112 0 3823 127 1 Planctomycetaceae 9 family 3696 30 126 0 2055 42 118 0 1 3 Planctomyces genus 2013 0 2648843 2 no rank 0 1632864 799 1 Planctomyces sp. SH-PL14 species 1214 0 1636152 species 1 Planctomyces sp. SH-PL62 0 1936111 1 646 2 Fuerstia genus 1 Fuerstia marisgermanicae 1 species 1891926 0 645 0 1649480 431 genus 1 120 0 431 species 1 Planctopirus limnophila Rubinisphaera 2 genus 1 0 1649490 1 534 533 119 0 Rubinisphaera brasiliensis 1 species 3 order 2691355 0 634 Gemmataceae 3 family 1 0 1914233 5 634 genus 2 Gemmata 1 0 113 1 629 0 2622970 628 1 no rank 628 1630693 0 Gemmata sp. SH-PL17 1 species 2691356 0 2003 7 order 1763524 0 2003 27 1 7 Isosphaeraceae family 1 genus Singulisphaera 2 466152 0 547 1 546 0 466153 Singulisphaera acidiphila 1 species 1 genus 2 Paludisphaera 995 12 1763521 0 1 Paludisphaera borealis species 983 1387353 0 2 Isosphaera genus 1 0 127 1 434 128 0 433 1 Isosphaera pallida species 0 2691354 1223 5 order 1 family 2691358 0 338 genus 1 0 1676125 338 338 1331910 0 species Thermogutta terrifontis 1 0 2691357 885 family 4 123 0 399 1 1 Pirellula 2 genus 398 125 0 Pirellula staleyi 1 species 1 genus 2 Rhodopirellula 265488 0 486 3 1 Rhodopirellula baltica species 483 265606 0 2517206 0 570 class 4 1 4 Candidatus Brocadiales order 1127829 0 570 9 Candidatus Brocadiaceae 3 family 1 0 1127830 1 561 380738 0 560 3 1 genus 2 Candidatus Kuenenia 0 174633 557 Candidatus Kuenenia stuttgartiensis 1 species 371 clade 3195598 1783270 0 0 456828 472 phylum 1 1 genus 472 456826 0 Candidatus Cloacimonas acidaminovorans 1 species 0 456827 472 1596 65842 0 phylum 4 class 4 Fibrobacteria 1 0 204430 5 1596 1591 3 218872 0 1 Fibrobacterales 3 order 0 204431 1588 2 family 1 genus Fibrobacter 2 1588 2 832 0 Fibrobacter succinogenes 1 species 0 833 1586 0 142182 2951 8 phylum class 8 Gemmatimonadetes 1 0 219685 11 2951 1 order 7 Gemmatimonadales 2940 73 219686 0 2867 16 219687 0 1 Gemmatimonadaceae 6 family 0 1706036 8 1359 Gemmatirosa 2 genus 1 1 Gemmatirosa kalamazoonesis species 1351 861299 0 Gemmatimonas 3 genus 1 26 1492 0 173479 731 0 1379270 species 1 Gemmatimonas phototrophica species Gemmatimonas aurantiaca 1 0 173480 735 clade 358 3190579 0 68336 2109 1134404 0 phylum 7 7 Ignavibacteria class 1 0 795747 1 2109 0 795748 3 2108 Ignavibacteriales 6 order 1 1150 0 795749 2 family 1 genus 2 Ignavibacterium 1150 2 795750 0 1148 591197 0 1 Ignavibacterium album species 1 3 Melioribacteraceae family 1334117 0 955 1 1134403 0 954 1 1 Melioribacter 2 genus Melioribacter roseus 1 species 953 0 1134405 1 329 Bacteroidetes phylum 3178382 18 976 0 6 class 1937959 0 1758 0 1936988 7 1758 6 Saprospirales order 1 5 1249 0 1937961 family 3 Haliscomenobacteraceae 1 1244 4 2349 0 1 genus Haliscomenobacter 2 1 Haliscomenobacter hydrossis species 0 2350 1240 family 2 0 89374 502 2 Saprospira genus 1 0 1007 6 502 496 0 1008 species Saprospira grandis 1 1 Sphingobacteriia 24 class 18832 12 117747 0 0 200666 23 18820 order Sphingobacteriales 23 1 22 18797 0 84566 Sphingobacteriaceae 22 family 1 1 1197 0 929509 genus 2 Solitalea 1 995 0 1196 species Solitalea canadensis 1 28453 0 5846 23 1 6 Sphingobacterium genus 1146 0 1010 Sphingobacterium mizutaii 1 species 4677 2609468 0 no rank 4 species Sphingobacterium sp. ML3W 1 1538644 0 1310 Sphingobacterium sp. 21 1 species 1018 0 743722 1070 0 1933220 species 1 Sphingobacterium sp. B29 1 Sphingobacterium sp. G1-14 species 0 2003121 1279 genus Pseudopedobacter 2 1 5 1323 0 1649482 Pseudopedobacter saltans 1 species 151895 0 1318 1 no rank 1185 84568 0 0 1986952 1185 species 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 84567 0 6407 15 1 genus Pedobacter 6 1 Pedobacter steynii species 1202 0 430522 984 0 1175 species Pedobacter heparinus 1 1172 2628915 0 no rank 1 species Pedobacter sp. PACM 27299 1 1727164 0 1172 896 363852 0 1 Pedobacter ginsengisoli species 0 188932 1947 Pedobacter cryoconitis 1 species 67 2817 0 423349 Mucilaginibacter 4 genus 1 species Mucilaginibacter sp. BJC16-A31 1 1234841 0 1005 0 1550579 884 1 Mucilaginibacter gotjawali species no rank 1 0 2617802 861 species 1 Mucilaginibacter sp. PAMC 26640 0 1300914 861 60 117651 0 117743 Flavobacteriia 149 class 1 0 200644 76 117591 order Flavobacteriales 148 1 104 Flavobacteriaceae family 1 472 78697 0 49546 0 76831 54 4752 genus Myroides 5 1 no rank 2 1843 0 2642485 species 1 Myroides sp. A21 921 1583100 0 Myroides sp. ZB35 1 species 0 1458492 922 1708 0 76832 Myroides odoratimimus 1 species 1147 480520 0 Myroides profundi 1 species genus 1 0 1176327 454 2636237 0 454 no rank 1 species 1 Aureitalea sp. RR4-38 454 0 2094025 1 genus 668 0 83612 0 57029 668 species 1 Psychroflexus torquis genus 2 Lutibacter 1 2 1094 0 358023 1092 0 1622118 species 1 Lutibacter profundi 1 genus Nonlabens 5 2339 3 363408 0 Nonlabens dokdonensis 1 species 521 0 328515 2 no rank 2615035 0 1136 Nonlabens sp. MIC269 1 species 0 1476901 489 species Nonlabens sp. MB-3u-79 1 647 2058134 0 Nonlabens sediminis 1 species 0 319236 679 genus 1 0 153265 907 0 101385 907 species 1 Aequorivita sublithincola 1 genus 0 1209327 1162 1162 0 1803846 Flavivirga eckloniae 1 species 0 393005 953 genus 1 species Tamlana sp. UJ94 1 953 2069432 0 5 genus 0 52959 6325 1630 0 996801 species 1 Polaribacter reichenbachii 1 Polaribacter vadi species 1305 1774273 0 3390 0 196858 no rank 3 Polaribacter sp. BM10 1 species 0 1529069 1218 1 Polaribacter sp. MED152 species 892 0 313598 1 Polaribacter sp. ALD11 species 2058137 0 1280 genus 1 0 2700084 1244 1 Lutibacter sp. LPB0138 species 1850246 0 1244 Olleya 2 genus 1 3 868 0 336276 1 no rank 865 2615019 0 865 0 2058135 Olleya sp. Bg11-27 1 species genus 2 225842 0 797 2644710 0 797 2 no rank 1 Formosa sp. Hel1_33_131 species 369 1336794 0 species 1 Formosa sp. Hel3_A1_48 428 1336795 0 0 292691 7 3351 genus Gramella 5 1 species Gramella sp. SH35 1 999 2126553 0 1 Gramella sp. LPB0144 species 643 1913577 0 411153 0 749 species Gramella forsetii 1 953 1486245 0 species Gramella flava 1 1 genus 261827 0 1035 Algibacter alginicilyticus 1 species 1736674 0 1035 genus 1 729 0 178469 1 Arenibacter algicola species 0 616991 729 1 genus Zunongwangia 2 1147 2 417127 0 1 Zunongwangia profunda species 1145 398743 0 genus 2 Sediminicola 1 2 619 0 389486 2648869 0 617 1 no rank 617 0 1453352 1 Sediminicola sp. YIK13 species genus 9 Flavobacterium 1 12 11066 0 237 species 1 Flavobacterium johnsoniae 3105 986 0 species Flavobacterium indicum 1 881 0 312277 species 1 Flavobacterium psychrophilum 806 96345 0 0 996 2341 species Flavobacterium columnare 1 598 1763534 0 species 1 Flavobacterium crassostreae 0 1492737 1337 species 1 Flavobacterium gilvum 0 1306519 1223 species Flavobacterium commune 1 0 55197 763 species Flavobacterium branchiophilum 1 0 104267 1 4412 Tenacibaculum 5 genus 1 1850252 0 923 Tenacibaculum todarodis 1 species 107401 0 958 species Tenacibaculum maritimum 1 species 1 Tenacibaculum dicentrarchi 1228 0 669041 1302 0 584609 species Tenacibaculum jejuense 1 0 291183 1 2409 genus 4 Lacinutrix 1 847 1486034 0 1 Lacinutrix venerupis species no rank 2 0 2647285 1561 0 2057808 851 species 1 Lacinutrix sp. Bg11-31 710 0 983544 species 1 Lacinutrix sp. 5H-3-7-4 3 Winogradskyella genus 1 1 1448 0 286104 0 2615021 1447 no rank 2 Winogradskyella sp. J14-2 1 species 647 1936080 0 species 1 Winogradskyella sp. PG-2 0 754409 800 104264 0 3355 14 1 genus Cellulophaga 4 species 1 Cellulophaga algicola 0 59600 1022 species 1 Cellulophaga lytica 1034 0 979 species 1 Cellulophaga baltica 76594 0 1285 0 1204360 8 836 genus Siansivirga 2 1 Siansivirga zeaxanthinifaciens 1 species 828 762954 0 0 216431 568 genus 1 313588 0 568 Croceibacter atlanticus 1 species 0 1518147 1145 genus 1 0 1790137 1145 Wenyingzhuangia fucanilytica 1 species 1649495 0 1147 1 1 genus 2 Seonamhaeicola 1 no rank 1146 2622645 0 1936081 0 1146 Seonamhaeicola sp. S2-3 1 species 2 no rank 0 61432 1920 species 1 Flavobacteriaceae bacterium UJ101 1127 1150389 0 Flavobacteriaceae bacterium 3519-10 1 species 531844 0 793 1 2 Salegentibacter genus 143222 0 973 2 2633436 0 971 no rank 1 Salegentibacter sp. T436 1 species 971 1729720 0 112040 0 980 genus 1 species 1 Zobellia galactanivorans 980 0 63186 5 3235 0 252356 5 Maribacter genus 1 0 2615042 2575 no rank 3 species Maribacter sp. 1_2014MBL_MicDiv 1 898 0 1644130 species Maribacter sp. HTCC2170 1 806 0 313603 Maribacter sp. T28 1 species 1836467 0 871 0 1178778 655 species 1 Maribacter cobaltidurans 2 1510 0 111500 genus Muricauda 3 1 111501 0 1115 Muricauda ruestringensis 1 species Muricauda lutaonensis 1 species 393 516051 0 4 Dokdonia genus 1 0 326319 33 1787 2 no rank 1248 0 2615033 species Dokdonia sp. 4H-3-7-5 1 0 983548 710 0 313590 538 species 1 Dokdonia sp. MED134 species 1 Dokdonia donghaensis 0 326320 506 0 1016 105 12408 Capnocytophaga 15 genus 1 567 0 45243 1 Capnocytophaga haemolytica species 0 1017 757 species Capnocytophaga gingivalis 1 1 Capnocytophaga canimorsus species 1258 0 28188 species 1 Capnocytophaga ochracea 1018 0 734 no rank 6 5109 2640652 0 1 Capnocytophaga sp. oral taxon 323 species 1705617 0 816 0 1945658 785 Capnocytophaga sp. H4358 1 species 1945657 0 829 Capnocytophaga sp. H2931 1 species species Capnocytophaga sp. ChDC OS43 1 920 209053 0 species 1 Capnocytophaga sp. oral taxon 878 1316596 0 861 Capnocytophaga sp. oral taxon 864 1 species 898 0 1316593 722 28189 0 Capnocytophaga cynodegmi 1 species Capnocytophaga stomatis 1 species 0 1848904 971 species Capnocytophaga sputigena 1 1019 0 1553 1 Capnocytophaga leadbetteri species 0 327575 632 1 Robiginitalea 2 genus 582 2 252306 0 1 Robiginitalea biformata species 0 252307 580 2 family 626 0 1333713 0 267986 8 626 genus 2 Owenweeksia 1 species 1 Owenweeksia hongkongensis 618 253245 0 1853230 0 981 4 1 3 Crocinitomicaceae family 977 12 332102 0 1 Fluviicola 2 genus 0 191579 965 1 Fluviicola taffensis species 1 Ichthyobacteriaceae 2 family 501 5 1755828 0 496 0 1755829 genus 1 496 242600 0 Ichthyobacterium seriolicida 1 species 3 3582 0 39782 Blattabacteriaceae 10 family 1 Blattabacterium 9 genus 1 0 34098 19 3579 2647581 0 2636 6 no rank 0 624186 755 species Blattabacterium sp. (Blattella germanica) 1 286 0 367806 species Blattabacterium sp. (Blatta orientalis) 1 436 0 1186051 Blattabacterium sp. (Blaberus giganteus) 1 species species Blattabacterium sp. (Periplaneta americana) 1 0 367488 216 species 1 Blattabacterium sp. (Mastotermes darwiniensis) 0 39768 376 567 1316444 0 1 Blattabacterium sp. (Nauphoeta cinerea) species species 1 Blattabacterium cuenoti 1653831 0 394 530 0 164514 species 1 Blattabacterium punctulatus 0 2762318 32363 family 22 10 no rank 2782232 0 13424 0 59732 52 12061 9 Chryseobacterium genus 1 4214 2593645 0 3 no rank 878220 0 1434 species Chryseobacterium sp. StRB126 1 Chryseobacterium sp. T16E-39 1 species 0 2015076 1602 1721091 0 1178 species Chryseobacterium sp. IHB B 17019 1 species Chryseobacterium piperi 1 1157 0 558152 species 1 Chryseobacterium glaciei 0 1685010 1356 1 Chryseobacterium camelliae species 1265445 0 1319 1 Chryseobacterium indologenes species 0 253 2720 1243 1324352 0 species Chryseobacterium gallinarum 1 1 genus 2782228 0 1363 Chryseobacterium taklimakanense 1 species 0 536441 1363 2 Weeksella genus 1 6 653 0 1013 1 Weeksella virosa species 0 1014 647 8269 44 308865 0 1 genus Elizabethkingia 6 species 1 Elizabethkingia meningoseptica 0 238 1273 172045 0 1736 1 Elizabethkingia miricola species 1756149 0 1017 Elizabethkingia genomosp. 3 1 species 3032 0 1117645 species 1 Elizabethkingia anophelis Elizabethkingia genomosp. 4 1 species 1167 1756150 0 2 Ornithobacterium genus 1 40 7957 0 28250 Ornithobacterium rhinotracheale 1 species 28251 0 7917 genus 2 Riemerella 1 3 2060 0 34084 1 Riemerella anatipestifer species 0 34085 2057 4 no rank 765 313602 0 Candidatus Walczuchella 2 genus 1 2 201 0 1940138 199 1415657 0 species 1 Candidatus Walczuchella monophlebidarum genus 2 Candidatus Sulcia 1 1 564 0 336809 336810 0 563 species 1 Candidatus Sulcia muelleri 0 1100069 71 4148 order Bacteroidetes Order II. Incertae sedis 7 1 Rhodothermaceae 6 family 1 0 563843 37 4077 no rank 1 1196022 0 1518 species Rhodothermaceae bacterium RA 1 1779382 0 1518 146918 0 755 1 1 genus 2 Salinibacter 1 Salinibacter ruber species 146919 0 754 7 1767 0 29548 2 Rhodothermus genus 1 species 1 Rhodothermus marinus 1760 0 29549 200643 0 2991222 97 1 class 69 Bacteroidia 1 Bacteroidales 58 order 171549 0 2985501 298 0 171551 24 6662 family 4 Porphyromonadaceae 1 genus Porphyromonas 3 1 1 6638 0 836 1 Porphyromonas gingivalis species 0 837 5109 1 Porphyromonas asaccharolytica species 0 28123 1528 no rank 5 333046 0 1452493 909656 0 1451082 3 genus species 1 Bacteroides dorei 0 357276 275620 70821 0 376805 species Bacteroides salanitronis 1 821 0 1104641 species 1 Bacteroides vulgatus 1 genus Candidatus Azobacteroides 2 1411 4 511434 0 511435 0 1407 Candidatus Azobacteroides pseudotrichonymphae 1 species 2005519 0 76381 3 1 3 Barnesiellaceae family 29 76378 0 397864 genus Barnesiella 2 1 76349 397865 0 Barnesiella viscericola 1 species family 2 0 1853231 77665 1 2 Odoribacter genus 77665 2 283168 0 77663 28118 0 Odoribacter splanchnicus 1 species 0 2005523 24 3028 family Paludibacteraceae 3 1 1 Paludibacter 2 genus 346096 0 3004 7 185300 0 2997 Paludibacter propionicigenes 1 species 0 2005520 8975 5 family 2 Fermentimonas genus 1 1 2023 0 1784836 1562970 0 2022 Fermentimonas caenicola 1 species 0 307628 3672 genus 1 1 Petrimonas mucosa species 3672 1642646 0 genus Proteiniphilum 2 1 4 3280 0 294702 3276 0 1642647 species 1 Proteiniphilum saccharofermentans 1 7 Tannerellaceae family 2005525 0 251466 55 1 Tannerella 3 genus 195950 0 11687 12 1 no rank 2620507 0 3219 species 1 Tannerella sp. oral taxon HOT-286 3219 0 712710 28112 0 8456 species 1 Tannerella forsythia 375288 0 239724 69 1 genus 3 Parabacteroides 1 Parabacteroides distasonis species 81262 0 823 158393 2649774 0 1 no rank 0 2025876 158393 species 1 Parabacteroides sp. CT06 185291 0 1098 1 no rank 1098 1400053 0 1 Bacteroidales bacterium CF species 1 Bacteroidaceae 11 family 909246 26 815 0 816 0 909220 40147 1 genus Bacteroides 10 species Bacteroides helcogenes 1 46226 290053 0 1796613 0 105066 species Bacteroides caecimuris 1 0 246787 167357 1 Bacteroides cellulosilyticus species 34317 0 28119 1 Bacteroides zoogleoformans species Bacteroides heparinolyticus 1 species 0 28113 35482 134654 0 818 species 1 Bacteroides thetaiotaomicron 28116 0 82768 species Bacteroides ovatus 1 172359 817 0 species Bacteroides fragilis 1 47678 0 90844 species 1 Bacteroides caccae 1 family 11 Prevotellaceae 171552 0 107763 12 Prevotella 10 genus 1 142 107751 0 838 species 1 Prevotella denticola 28129 0 3485 0 839 5123 species Prevotella ruminicola 1 1 Prevotella melaninogenica species 5420 28132 0 species 1 Prevotella jejuni 3664 1177574 0 1 Prevotella dentalis species 0 52227 4856 Prevotella intermedia 1 species 76216 0 28131 76123 0 2320 Prevotella enoeca 1 species 1 no rank 2428 2638335 0 0 652716 2428 species Prevotella sp. oral taxon 299 1 species 1 Prevotella fusca 4097 589436 0 171550 0 90426 9 1 family Rikenellaceae 5 27 89293 0 239759 genus 2 Alistipes 1 89266 214856 0 species Alistipes finegoldii 1 1124 3 1611681 0 1 Mucinivorans 2 genus 0 1433126 1121 Mucinivorans hirudinis 1 species 6 5624 0 1970189 Marinilabiliales 10 order 1 0 1573805 1544 family 1 1544 0 2060722 1 genus 1544 0 1717717 species 1 Marinifilaceae bacterium SPP2 0 1970190 24 919 Salinivirgaceae 3 family 1 1970191 0 895 5 1 genus 2 Salinivirga Salinivirga cyanobacteriivorans 1 species 890 0 1307839 1 Marinilabiliaceae 2 family 558415 0 1094 24 1 genus 1070 0 1193324 1070 0 889453 species Alkalitalea saponilacus 1 1 3 Prolixibacteraceae family 2061 7 1471398 0 1 Draconibacterium 2 genus 2054 9 1471399 0 2045 1168034 0 species Draconibacterium orientale 1 35804 67 768503 0 1 class Cytophagia 56 35737 150 768507 0 1 55 Cytophagales order 89373 0 9596 27 1 16 Cytophagaceae family 1 genus 2 Dyadobacter 1256 1 120831 0 species Dyadobacter fermentans 1 0 94254 1255 0 978 3 1125 genus 2 Cytophaga 1 species 1 Cytophaga hutchinsonii 1122 0 985 1 Fibrella 2 genus 861914 0 744 1 743 0 2620963 no rank 1 1 Fibrella sp. ES10-3-2-2 species 743 1834519 0 0 107 7 4438 Spirosoma 6 genus 1 1 Spirosoma sp. HA7 species 902 0 2057025 918 0 1379870 species 1 Spirosoma radiotolerans 0 564064 729 species 1 Spirosoma rigui 907 1211326 0 species Spirosoma aerolatum 1 1 Spirosoma montaniterrae species 1178516 0 975 genus Leadbetterella 2 1 0 319458 6 962 956 0 316068 1 Leadbetterella byssophila species 105 0 1044 1 genus 1044 0 106 species Runella slithyformis 1 1853234 0 1675 3 1 family 3 Persicobacteraceae 2 Persicobacter genus 1 0 59740 7 1672 2664020 0 1665 no rank 1 1085624 0 1665 Persicobacter sp. JZB09 1 species family Amoebophilaceae 4 1 6 576 0 1501348 0 273135 348 genus 1 no rank 1 348 0 2641185 348 249402 0 Cardinium endosymbiont of Encarsia pergandiella 1 species Candidatus Amoebophilus 2 genus 1 0 281119 1 222 1 Candidatus Amoebophilus asiaticus species 0 281120 221 1 family 3 Flammeovirgaceae 200667 0 2870 28 no rank 1 1266 340671 0 Flammeovirgaceae bacterium 311 1 species 0 1257021 1266 genus 1 1576 0 59739 1576 2637820 0 no rank 1 1 Flammeovirga sp. MY04 species 0 1191459 1576 1937968 0 1488 2 1 Bernardetiaceae 2 family 1486 1937972 0 genus 1 1 Bernardetia litoralis species 0 999 1486 1 family 8 Cyclobacteriaceae 3789 9 563798 0 1 Cyclobacterium 3 genus 1622 17 68288 0 species Cyclobacterium marinum 1 928 0 104 677 320787 0 species Cyclobacterium amurskyense 1 Echinicola 2 genus 1 1 938 0 390846 1 Echinicola vietnamensis species 937 390884 0 1 genus 702 0 232244 232259 0 702 1 Belliella baltica species 0 246875 518 1 genus 0 1727163 518 species Algoriphagus sp. M8-2 1 1036 2762301 0 2 family 0 869806 4 1036 genus 2 Marivirga 1 1032 0 1006 1 Marivirga tractuosa species 1 family 16 Hymenobacteraceae 1853232 0 14557 88 6 2242 0 323449 3 Pontibacter genus 1 species Pontibacter akesuensis 1 1304 388950 0 species Pontibacter korlensis 1 400092 0 932 89966 0 9812 92 1 Hymenobacter 8 genus 1 Hymenobacter sedentarius species 0 1411621 1476 no rank 5 0 2615202 6983 1356852 0 1725 species 1 Hymenobacter sp. APR13 1484118 0 1669 species 1 Hymenobacter sp. PAMC 26628 species 1 Hymenobacter sp. PAMC 26554 1472 0 1484116 1 Hymenobacter sp. DG25A species 0 1385663 908 1209 1385664 0 species Hymenobacter sp. DG25B 1 1446467 0 1261 species 1 Hymenobacter swuensis 8 2415 0 1379908 genus Rufibacter 4 1 0 2639626 1600 2 no rank species Rufibacter sp. DG31D 1 0 1379910 768 Rufibacter sp. DG15C 1 species 0 1379909 832 512763 0 807 species 1 Rufibacter tibetensis 3 8949 0 1853228 class Chitinophagia 17 1 0 1853229 12 8946 16 Chitinophagales order 1 8934 51 563835 0 1 15 Chitinophagaceae family Arachidicoccus 2 genus 1 0 1769012 1 891 1 no rank 890 0 2636138 890 0 1850526 1 Arachidicoccus sp. BS20 species 0 354354 1 1284 2 Niastella genus 1 354356 0 1283 species Niastella koreensis 1 649460 0 1461 1 1 genus Filimonas 2 species 1 Filimonas lacunae 477680 0 1460 3 Chitinophaga genus 1 4 2316 0 79328 species Chitinophaga pinensis 1 1373 79329 0 species 1 Chitinophagaceae bacterium 13 0 2029983 939 0 398041 2 870 2 Flavisolibacter genus 1 1492898 0 868 species Flavisolibacter tropicus 1 3 Niabella genus 1 0 379899 2 2061 Niabella ginsenosidivorans 1 species 1176587 0 1013 1046 0 446683 species 1 Niabella soli 10088 1090 0 phylum 22 1 class Chlorobia 22 191410 0 10088 37 1 order Chlorobiales 21 10051 114 191411 0 1 family Chlorobiaceae 20 9937 34 191412 0 256319 0 3003 55 1 4 Chlorobaculum genus species 1 Chlorobaculum parvum 1132 274539 0 725 1097 0 species Chlorobaculum tepidum 1 1091 274537 0 species Chlorobaculum limnaeum 1 1101 0 2216 25 1 genus 5 Prosthecochloris no rank 3 2632826 0 1665 Prosthecochloris sp. CIB 2401 1 species 441 0 1868325 species 1 Prosthecochloris sp. GSB1 631 281093 0 0 1974213 593 1 Prosthecochloris sp. HL-130-GSB species Prosthecochloris aestuarii 1 species 526 0 1102 4181 0 274493 8 no rank Chlorobium 5 genus 1 7 2818 0 1091 337090 0 464 Chlorobium chlorochromatii 1 species 1 Chlorobium phaeovibrioides species 450 1094 0 765 0 1092 Chlorobium limicola 1 species 1132 0 1096 species 1 Chlorobium phaeobacteroides 15 1363 0 1099 genus Pelodictyon 3 1 34090 0 544 species Pelodictyon phaeoclathratiforme 1 804 0 1100 species 1 Pelodictyon luteolum 1 503 0 100715 2 Chloroherpeton genus 1 0 100716 502 1 Chloroherpeton thalassium species 5 phylum 1053 200938 0 1 class Chrysiogenetes 5 1053 2 118001 0 1 4 Chrysiogenales order 189769 0 1051 23 189770 0 1028 3 1 Chrysiogenaceae 3 family genus 2 Desulfurispirillum 1 0 393029 6 1025 1019 0 936456 Desulfurispirillum indicum 1 species 200783 0 5808 phylum 28 class 28 Aquificae 1 6 5808 0 187857 1 order 6 Desulfurobacteriales 1042 2 1485951 0 3 1040 0 558314 family Desulfurobacteriaceae 5 1 1 2 Thermovibrio genus 171868 0 273 1 1 Thermovibrio ammonificans species 272 228745 0 Desulfurobacterium 2 genus 1 1 764 0 64159 Desulfurobacterium thermolithotrophum 1 species 763 0 64160 Aquificales 21 order 1 1 4760 0 32069 4 2632 0 64898 family 12 Aquificaceae 1 1 genus 376 0 2713 species 1 Aquifex aeolicus 63363 0 376 240 75905 0 genus 2 1 Thermocrinis albus species 64 136094 0 0 75906 176 species Thermocrinis ruber 1 1 2 Hydrogenobacter genus 939 0 129 1 0 940 128 species 1 Hydrogenobacter thermophilus 168657 0 1883 55 1 6 Hydrogenobaculum genus 1828 0 2622382 no rank 5 0 547144 364 species Hydrogenobaculum sp. HO 1 species Hydrogenobaculum sp. SN 1 364 0 547146 species 1 Hydrogenobaculum sp. SHO 547145 0 364 1 Hydrogenobaculum sp. Y04AAS1 species 0 380749 372 Hydrogenobaculum sp. 3684 1 species 0 547143 364 255 90150 0 2 no rank 412592 0 255 1 1 2 Thermosulfidibacter genus 254 412593 0 Thermosulfidibacter takaii 1 species 1 Hydrogenothermaceae 6 family 224027 0 1872 14 1 genus 3 Sulfurihydrogenibium 1395 4 212790 0 0 309806 576 1 Sulfurihydrogenibium azorense species no rank 1 0 2619248 815 species Sulfurihydrogenibium sp. YO3AOP1 1 815 0 436114 genus 2 Persephonella 1 0 182899 1 463 species 1 Persephonella marina 309805 0 462 no rank 3 2323 0 660 clade 3 660 1783234 0 2 clade 95901 0 464 464 2497643 0 2 class 464 2497644 0 order 2 0 2497645 464 family 2 2 Candidatus Babela genus 1 1 464 0 1551504 673862 0 463 Candidatus Babela massiliensis 1 species 1 phylum 196 95818 0 196 0 1895827 no rank 1 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 2056494 0 196 0 200940 1944 6 phylum 0 67799 1944 class 6 6 order 1944 0 188710 0 188711 1 1944 Thermodesulfobacteriaceae 6 family 1 1740 0 1228 genus 2 0 1741 405 1 Thermodesulfobacterium commune species 0 1295609 823 Thermodesulfobacterium geofontis 1 species genus Thermodesulfatator 2 1 0 241192 3 401 398 171695 0 species Thermodesulfatator indicus 1 1 genus 444090 0 314 1653476 0 314 Caldimicrobium thiodismutans 1 species 24 phylum 45375 0 32066 1 Fusobacteriia 24 class 45375 18 203490 0 203491 0 45357 62 1 23 Fusobacteriales order 8 11894 0 1129771 Leptotrichiaceae 10 family 1 genus 1 34104 0 1615 0 34105 1615 1 Streptobacillus moniliformis species genus Sneathia 2 1 0 168808 4 1616 1 Sneathia amnii species 1612 0 187101 1 genus Leptotrichia 5 32067 0 6484 9 0 2633022 4799 3 no rank species 1 Leptotrichia sp. oral taxon 212 1704 0 712357 Leptotrichia sp. oral taxon 498 1 species 1585 712368 0 1785996 0 1510 species 1 Leptotrichia sp. oral taxon 847 1 Leptotrichia buccalis species 40542 0 1676 genus 1 2171 32068 0 species 1 Sebaldella termitidis 2171 0 826 family Fusobacteriaceae 12 1 19 33401 0 203492 2 Ilyobacter genus 1 0 167639 1 1181 1180 0 167642 1 Ilyobacter polytropus species 1 Fusobacterium 9 genus 848 0 32201 86 1 Fusobacterium periodonticum species 5642 0 860 1 Fusobacterium varium species 4405 0 856 0 850 2487 1 Fusobacterium mortiferum species 851 0 10923 Fusobacterium nucleatum 1 species Fusobacterium ulcerans 1 species 861 0 2470 1 Fusobacterium gonidiaformans species 1648 0 849 0 859 1438 species 1 Fusobacterium necrophorum Fusobacterium hwasookii 1 species 0 1583098 3102 15436 200918 0 43 phylum 40 15436 0 188708 Thermotogae 43 class 1 1 Thermotogales 27 order 2419 0 9534 4 6 5397 0 188709 17 Thermotogaceae family 1 genus 11 Thermotoga 1 34 3558 0 2335 Thermotoga maritima 1 species 0 2336 343 Thermotoga profunda 1 species 1508420 0 438 273 0 1508419 species Thermotoga caldifontis 1 2337 0 515 species Thermotoga neapolitana 1 1 Thermotoga naphthophila species 93930 0 276 278 0 93929 Thermotoga petrophila 1 species no rank 4 1401 2631113 0 Thermotoga sp. Cell2 1 species 1157947 0 327 0 126740 290 Thermotoga sp. RQ2 1 species 0 126738 497 species Thermotoga sp. RQ7 1 species 1 Thermotoga sp. 2812B 287 1157948 0 13 1833 0 1643951 genus 5 Pseudothermotoga 1 Pseudothermotoga lettingae 1 species 502 0 177758 512 38322 0 species Pseudothermotoga elfii 1 533 57487 0 species Pseudothermotoga hypogea 1 273 0 119394 species 1 Pseudothermotoga thermarum 1 9 Fervidobacteriaceae family 4133 10 1643950 0 1288 0 2422 genus 3 464 0 2424 species 1 Fervidobacterium nodosum 93466 0 515 Fervidobacterium pennivorans 1 species 1 Fervidobacterium islandicum species 2423 0 309 1 Thermosipho 5 genus 2835 32 2420 0 species Thermosipho melanesiensis 1 0 46541 664 2 no rank 1193 0 2676525 species 1 Thermosipho sp. 1063 597 1462747 0 1437364 0 596 species Thermosipho sp. 1070 1 species 1 Thermosipho africanus 946 0 2421 order Kosmotogales 7 1 0 1643946 1 938 937 13 1643948 0 1 Kosmotogaceae 6 family 1 3 Kosmotoga genus 571 2 651456 0 1 Kosmotoga olearia species 0 651457 252 317 1330330 0 1 Kosmotoga pacifica species 6 353 0 1184396 genus 2 Mesotoga 1 species Mesotoga prima 1 347 1184387 0 Petrotogales 8 order 1 0 1643947 2 4924 4922 0 1643949 family 7 0 160798 25 3348 genus 3 Marinitoga 1 1 no rank 1515 2640159 0 species Marinitoga sp. 1137 1 1515 1545835 0 1 Marinitoga piezophila species 149715 0 1808 28236 0 855 8 1 2 Petrotoga genus species 1 Petrotoga mobilis 847 69499 0 1 genus 2 Defluviitoga 1511648 0 719 1 1 Defluviitoga tunisiensis species 1006576 0 718 2498710 0 372 clade 4 4 phylum 67814 0 372 0 693071 1 372 class 4 Caldisericia 1 1 order 3 Caldisericales 371 2 693072 0 15 369 0 693073 family 2 Caldisericaceae 1 354 0 693074 1 genus 354 0 693075 1 Caldisericum exile species 0 74152 2316 6 phylum 0 641853 450 2 class 1 2 Elusimicrobiales order 641854 0 450 1 family 1 449 641876 0 1 genus 0 423604 449 species 1 Elusimicrobium minutum 423605 0 449 550 99260 0 no rank 1 550 167965 0 uncultured Termite group 1 bacterium 1 species 1316 447830 0 class 3 1 Endomicrobiales 3 order 1783344 0 1316 1 2 family 1315 1783343 0 1408194 0 1315 2 genus 1 Candidatus Endomicrobium trichonymphae species 482 1408204 0 1408281 0 833 1 Endomicrobium proavitum species 1930617 0 931 phylum 4 931 5 1962850 0 1 Calditrichae 4 class 1962852 0 926 5 1 3 Calditrichales order family Calditrichaceae 2 1 0 1962854 1 921 1 genus 0 187144 920 187145 0 920 1 Caldithrix abyssi species 7 phylum 2920 200930 0 2920 1 68337 0 1 class Deferribacteres 7 2919 8 191393 0 1 Deferribacterales 6 order 5 Deferribacteraceae family 1 0 191394 10 2911 910 53572 0 genus 1 910 197162 0 species Deferribacter desulfuricans 1 genus 1 776 0 117999 Denitrovibrio acetiphilus 1 species 776 0 118000 706 0 2351 1 genus species 1 Flexistipes sinusarabici 2352 0 706 545865 0 509 1 genus 509 0 477976 1 Calditerrivibrio nitroreducens species phylum 14 0 40117 3918 Nitrospira 14 class 1 12 3918 0 203693 order 13 Nitrospirales 1 0 189778 32 3906 1 Nitrospiraceae 12 family 3874 9 189779 0 1 Leptospirillum 4 genus 179 0 963 10 species group 1 370 261385 0 0 1660083 370 species Leptospirillum sp. Group II 'CF-1' 1 species group 1 0 655606 191 180 0 191 1 Leptospirillum ferrooxidans species species group 1 392 0 261386 species 1 Leptospirillum ferriphilum 392 178606 0 genus 2 Thermodesulfovibrio 1 0 28261 2 677 28262 0 675 species 1 Thermodesulfovibrio yellowstonii 1 genus Nitrospira 5 1234 0 2225 25 Nitrospira defluvii 1 species 645 330214 0 0 42253 643 1 Nitrospira moscoviensis species Candidatus Nitrospira inopinata 1 species 507 1715989 0 Nitrospira japonica 1 species 405 0 1325564 8071262 1783272 0 1723 clade 7 12626 0 200795 48 Chloroflexi phylum 1 4 2583 0 292625 class 8 Anaerolineae 1 order 7 Anaerolineales 1 9 2579 0 292629 0 292628 7 2570 family Anaerolineaceae 6 1 genus 2 Anaerolinea 1 6 654 0 233189 0 167964 648 1 Anaerolinea thermophila species 0 2019482 1 493 genus Brevefilum 2 1 492 0 1986204 species 1 Brevefilum fermentans 1324991 0 1416 1 no rank 1416 1889813 0 species Anaerolineaceae bacterium oral taxon 439 1 1851 45 1382928 0 1 Ardenticatenia 5 class Ardenticatenales 4 order 1 0 1382929 28 1806 12 1778 0 1382930 family Ardenticatenaceae 3 1 1988031 0 1766 9 1 2 Candidatus Promineofilum genus 1 Candidatus Promineofilum breve species 1757 1806508 0 0 32061 4 3001 class Chloroflexia 11 1 12 2997 0 32064 10 Chloroflexales order 1 1732 0 1508595 4 suborder family Roseiflexaceae 4 1 0 1508635 13 1732 0 120961 8 1719 3 Roseiflexus genus 1 Roseiflexus castenholzii 1 species 0 120962 781 930 2609473 0 no rank 1 930 0 357808 1 Roseiflexus sp. RS-1 species 1253 1508594 0 suborder 5 1 family Chloroflexaceae 5 1106 0 1253 4 1107 0 1249 14 1 4 Chloroflexus genus 407 0 152260 species Chloroflexus aggregans 1 828 414 1108 0 1 species 2 Chloroflexus aurantiacus strain 1 Chloroflexus sp. Y-400-fl 0 480224 414 1 9 Dehalococcoidia class 3006 7 301297 0 1003 7 670486 0 1 Dehalogenimonas 3 genus 1 Dehalogenimonas lykanthroporepellens species 461 0 552810 Dehalogenimonas formicexedens 1 species 0 1839801 535 0 1202465 5 1996 order 5 Dehalococcoidales 1 2 1991 0 1202464 4 Dehalococcoidaceae family 1 1 genus 3 Dehalococcoides 1989 4 61434 0 0 61435 1584 species Dehalococcoides mccartyi 1 no rank 1 401 0 237581 401 1522671 0 species 1 Dehalococcoides sp. UCH007 1 9 Thermomicrobia class 1160 7 189775 0 85000 0 715 4 subclass 85001 0 715 15 1 order Sphaerobacterales 4 700 0 255728 suborder 3 0 85002 2 700 family 3 Sphaerobacteraceae 1 5 698 0 2056 2 Sphaerobacter genus 1 species 1 Sphaerobacter thermophilus 2057 0 693 Thermomicrobiales 4 order 1 0 189776 10 438 3 Thermomicrobiaceae family 1 11 428 0 189777 1 genus Thermomicrobium 2 417 37 499 0 380 500 0 species 1 Thermomicrobium roseum 1 class Caldilineae 5 1018 5 475962 0 4 Caldilineales order 1 6 1013 0 475963 0 475964 19 1007 family Caldilineaceae 3 1 233191 0 988 12 1 genus Caldilinea 2 976 0 133453 species 1 Caldilinea aerophila 1859062 0 385 2 no rank 0 262406 4 385 genus 2 Thermobaculum 1 1 Thermobaculum terrenum species 166501 0 381 7250980 187 1239 0 1 Firmicutes 726 phylum 23717 2 526524 0 1 class 11 Erysipelotrichia order 10 Erysipelotrichales 1 0 526525 18 23715 23697 56 128827 0 1 family Erysipelotrichaceae 9 genus Faecalibaculum 2 1 0 1729679 114 6275 6161 0 1702221 species 1 Faecalibaculum rodentium 1647 0 2997 28 1 Erysipelothrix 3 genus species 1 Erysipelothrix rhusiopathiae 1575 1648 0 1 Erysipelothrix larvae species 1394 0 1514105 no rank 1 544447 0 8851 1 Erysipelotrichaceae bacterium I46 species 1834207 0 8851 1 genus Turicibacter 2 5518 7 191303 0 5511 0 2638206 no rank 1 5511 0 1712675 Turicibacter sp. H121 1 species 1 19 Tissierellia class 21930 3 1737404 0 1737407 0 1142 2 no rank 1 genus 2 Ezakiella 1582879 0 1142 21 1 Ezakiella massiliensis species 0 1852374 1121 order Tissierellales 16 1 140 20785 0 1737405 17477 2038 1570339 0 1 family 12 Peptoniphilaceae 6 2767 0 165779 genus 3 Anaerococcus 1 Anaerococcus mediterraneensis 1 species 1332 1870984 0 33034 0 1429 species Anaerococcus prevotii 1 genus Peptoniphilus 2 1 13 1689 0 162289 2637196 0 1676 no rank 1 1912856 0 1676 species 1 Peptoniphilus sp. ING2-D1G 1161127 0 5650 2 1 2 Murdochiella genus 0 1852373 5648 Murdochiella vaginalis 1 species 1 genus Finegoldia 2 150022 0 2555 9 0 1260 2546 species Finegoldia magna 1 0 543311 12 2778 genus 2 Parvimonas 1 Parvimonas micra 1 species 0 33033 2766 2042895 0 3168 1 1 family 3 Gottschalkiaceae 0 1505664 4 3167 2 Gottschalkia genus 1 1 Gottschalkia acidurici species 1556 0 3163 Negativicutes 31 class 1 0 909932 65 71884 20176 21 1843488 0 1 order 5 Acidaminococcales 20155 53 909930 0 1 4 Acidaminococcaceae family 20102 55 904 0 1 genus Acidaminococcus 3 Acidaminococcus intestini 1 species 15181 0 187327 species 1 Acidaminococcus fermentans 905 0 4866 1843489 0 26841 915 1 order Veillonellales 11 1 family Veillonellaceae 10 31977 0 25926 1457 2 Dialister genus 1 28 5409 0 39948 Dialister pneumosintes 1 species 5381 0 39950 1 genus 2 Megasphaera 8707 167 906 0 species Megasphaera elsdenii 1 907 0 8540 14 2069 0 909928 2 Negativicoccus genus 1 species Negativicoccus massiliensis 1 1702287 0 2055 8284 8 29465 0 1 genus Veillonella 3 species Veillonella parvula 1 0 29466 6289 1987 0 248315 species 1 Veillonella rodentium 1 order Selenomonadales 14 24802 85 909929 0 0 1843491 119 21301 family Selenomonadaceae 9 1 18528 176 970 0 1 genus Selenomonas 6 no rank 3 9518 2637378 0 713030 0 3556 Selenomonas sp. oral taxon 136 1 species species 1 Selenomonas sp. oral taxon 478 3144 0 712538 0 1884263 2818 Selenomonas sp. oral taxon 920 1 species 3661 0 69823 Selenomonas sputigena 1 species species Selenomonas ruminantium 1 5173 971 0 Megamonas 2 genus 1 0 158846 2 2654 2652 0 158847 species 1 Megamonas hypermegale 3416 11 1843490 0 1 family Sporomusaceae 4 3405 13 365348 0 1 3 Pelosinus genus Pelosinus fermentans 1 species 0 365349 1739 1653 2629460 0 no rank 1 484770 0 1653 Pelosinus sp. UFO1 1 species 0 84086 1127 no rank 1 1127 243899 0 endosymbiont 'TC1' of Trimyema compressum 1 species class Bacilli 433 1 248 637944 0 91061 1 166 Lactobacillales order 186826 0 290620 3078 4949 7 186827 0 1 family 8 Aerococcaceae 55 4942 0 1375 genus 7 Aerococcus 1 species 1 Aerococcus viridans 1377 0 592 species Aerococcus christensenii 1 0 87541 1015 684 51665 0 1 Aerococcus urinaeequi species 0 119206 1186 species 1 Aerococcus sanguinicola species 1 Aerococcus urinaehominis 535 0 128944 Aerococcus urinae 1 species 0 1376 875 1 family Enterococcaceae 20 81852 0 36189 53 1 12 Enterococcus genus 1350 0 30233 1363 0 2005703 1411 Enterococcus wangshanyuanii 1 species 1354 0 1351 1 Enterococcus hirae species species 1 Enterococcus faecium 14394 1352 0 53345 0 1384 species 1 Enterococcus durans 0 2608891 2391 3 no rank Enterococcus sp. CR-Ec1 1 species 755 0 2057791 1 Enterococcus sp. FDAARGOS_163 species 863 0 2060306 species Enterococcus sp. FDAARGOS_375 1 0 2060307 773 species Enterococcus casseliflavus 1 37734 0 751 species Enterococcus faecalis 1 1351 0 4604 0 53346 1610 Enterococcus mundtii 1 species 974 417368 0 1 Enterococcus thailandicus species 3 Vagococcus genus 1 35 3049 0 2737 species 1 Vagococcus teuberi 1625 0 519472 Vagococcus penaei 1 species 1389 0 633807 1 genus 2 Melissococcus 33969 0 1301 13 Melissococcus plutonius 1 species 33970 0 1288 genus Tetragenococcus 2 1 4 1553 0 51668 51669 0 1549 species Tetragenococcus halophilus 1 18 Leuconostocaceae family 1 0 81850 26 8589 1 genus Weissella 6 46255 0 2702 54 species 1 Weissella koreensis 605 165096 0 654 1249 0 Weissella paramesenteroides 1 species Weissella jogaejeotgali 1 species 1631871 0 425 species 1 Weissella cibaria 137591 0 491 0 759620 473 species 1 Weissella ceti Oenococcus 2 genus 1 1 615 0 46254 1247 0 614 Oenococcus oeni 1 species 1 genus Leuconostoc 9 5246 24 1243 0 no rank 1 0 2685106 695 695 979982 0 Leuconostoc sp. C2 1 species 975 1244 0 1 Leuconostoc gelidum species 592 1252 0 species Leuconostoc carnosum 1 0 136609 688 species Leuconostoc kimchii 1 0 255248 340 1 Leuconostoc garlicum species 1 Leuconostoc citreum species 33964 0 427 1245 0 972 species Leuconostoc mesenteroides 1 species 1 Leuconostoc lactis 0 1246 533 0 1300 4049 168191 family 49 Streptococcaceae 1 8359 15 1357 0 1 Lactococcus 5 genus Lactococcus piscium 1 species 0 1364 991 0 1363 1200 Lactococcus garvieae 1 species Lactococcus raffinolactis 1 species 1366 0 1334 Lactococcus lactis 1 species 4819 0 1358 0 1301 2340 155783 43 Streptococcus genus 1 Streptococcus parauberis 1 species 1348 0 1234 species Streptococcus marmotae 1 723 1825069 0 1302 0 2089 species Streptococcus gordonii 1 species Streptococcus mitis 1 28037 0 1969 1304 0 8031 Streptococcus salivarius 1 species species 1 Streptococcus pneumoniae 1668 1313 0 Streptococcus halotolerans 1 species 662 1814128 0 species Streptococcus pseudopneumoniae 1 539 0 257758 0 1349 893 species 1 Streptococcus uberis species 1 Streptococcus equinus 1545 0 1335 species Streptococcus lutetiensis 1 150055 0 3636 2608887 0 5531 no rank 7 Streptococcus sp. oral taxon 431 1 species 569 712633 0 Streptococcus sp. 'group B' 1 species 637 0 1319 Streptococcus sp. FDAARGOS_192 1 species 1961 0 1839799 0 1156433 680 species Streptococcus sp. I-P16 1 species Streptococcus sp. A12 1 482 0 1759399 579 0 1156431 species Streptococcus sp. I-G2 1 623 1902136 0 species 1 Streptococcus sp. NPS 308 1811193 0 574 1 Streptococcus pantholopis species 1 Streptococcus agalactiae species 1311 0 10164 0 45634 959 species 1 Streptococcus cristatus 315405 0 2336 Streptococcus gallolyticus 1 species species group 3 34192 0 671232 species Streptococcus intermedius 1 1611 1338 0 species Streptococcus anginosus 1 18882 0 1328 Streptococcus constellatus 1 species 13699 0 76860 1 Streptococcus sanguinis species 1174 1305 0 82348 0 714 species 1 Streptococcus pluranimalium 3939 102684 0 species Streptococcus infantarius 1 Streptococcus oralis 1 species 2335 0 1303 2086 197614 0 1 Streptococcus pasteurianus species species 1 Streptococcus himalayensis 546 1888195 0 Streptococcus mutans 1 species 1309 0 1223 Streptococcus suis 1 species 1307 0 48708 1 Streptococcus macedonicus species 919 59310 0 species group 2 119603 0 2696 1336 0 1850 species 1 Streptococcus equi 1334 0 846 species 1 Streptococcus dysgalactiae 1314 0 2442 1 Streptococcus pyogenes species 400065 0 576 1 Streptococcus merionis species 0 1346 1091 species 1 Streptococcus iniae 1 Streptococcus thermophilus species 2405 1308 0 0 1318 1575 species 1 Streptococcus parasanguinis 1326 0 4269 species Streptococcus acidominimus 1 11 Carnobacteriaceae family 1 0 186828 9 7549 2747 0 4540 42 1 Carnobacterium 5 genus 2 no rank 2163 0 257487 0 1564681 1003 species 1 Carnobacterium sp. CP1 species Carnobacterium sp. 17-4 1 208596 0 1160 0 147709 964 1 Carnobacterium inhibens species 0 2751 1371 species Carnobacterium maltaromaticum 1 1 2 Marinilactibacillus genus 1314 2 191769 0 no rank 1 1312 0 2632303 1911586 0 1312 species Marinilactibacillus sp. 15R 1 1 Jeotgalibaca 3 genus 1470540 0 1686 10 no rank 1 2621505 0 906 906 0 1903686 species Jeotgalibaca sp. PTS2502 1 770 0 708126 species 1 Jeotgalibaca dankookensis no rank 1 1058 0 263855 1058 1993866 0 species Lactobacillales bacterium 1 61017 166 33958 0 1 58 Lactobacillaceae family 2767892 0 845 genus 1 845 240427 0 species 1 Lactobacillus paracollinoides 6297 2767879 0 genus 6 961 0 1007676 species 1 Lactobacillus ginsenosidimutans 1 Lactobacillus heilongjiangensis species 951 0 1074467 species 1 Lactobacillus allii 0 1847728 1219 species Lactobacillus farciminis 1 995 1612 0 0 1602 1160 species 1 Lactobacillus alimentarius species 1 Lactobacillus crustorum 0 392416 1011 0 2759736 3973 3 genus 1617 1582 0 1 Lactobacillus casei species 1083 0 47715 1 Lactobacillus rhamnosus species species 1 Lactobacillus paracasei 1597 0 1273 0 1253 10 3975 6 Pediococcus genus 1 species Pediococcus pentosaceus 1 1255 0 1082 848 187452 0 species Pediococcus claussenii 1 species 1 Pediococcus inopinatus 541 114090 0 777 51663 0 1 Pediococcus damnosus species 1 species group 717 0 1670797 1 Pediococcus acidilactici species 0 1254 717 1818 2767881 0 genus 2 1 Lactobacillus lindneri species 883 53444 0 1625 0 935 Lactobacillus sanfranciscensis 1 species 0 2767877 706 1 genus species Lactobacillus kunkeei 1 706 0 148814 1 genus 1493 0 2767876 species 1 Lactobacillus amylophilus 0 1603 1493 2804 0 2767842 genus 3 0 1589 677 species Lactobacillus pentosus 1 0 60520 360 1 Lactobacillus paraplantarum species species 1 Lactobacillus plantarum 1590 0 1767 0 2767893 2063 genus 3 species 1 Lactobacillus buchneri 701 0 1581 1138822 0 589 1 Lactobacillus curieae species 773 152331 0 Lactobacillus parabuchneri 1 species 0 2767886 1847 3 genus 1 Lactobacillus koreensis species 637971 0 552 1 Lactobacillus zymae species 453 267363 0 842 1580 0 Lactobacillus brevis 1 species 2 genus 0 2767889 1332 375175 0 439 species Lactobacillus backii 1 species 1 Lactobacillus coryniformis 0 1610 893 1 genus 661 0 2767890 species 1 Lactobacillus hokkaidonensis 1193095 0 661 4 genus 8560 2767887 0 Lactobacillus salivarius 1 species 0 1624 3414 1623 0 3545 Lactobacillus ruminis 1 species species Lactobacillus acidipiscis 1 89059 0 605 Lactobacillus agilis 1 species 996 1601 0 3519 0 2742598 3 genus species 1 Lactobacillus reuteri 1598 0 1845 species 1 Lactobacillus fermentum 0 1613 826 Lactobacillus mucosae 1 species 848 0 97478 genus 2 1734 0 2767885 1104 0 1599 species Lactobacillus sakei 1 Lactobacillus curvatus 1 species 0 28038 630 1207 19224 0 1578 genus 16 Lactobacillus 1 species Lactobacillus helveticus 1 0 1587 1354 3727 0 1604 species 1 Lactobacillus amylovorus 1584 0 2341 species Lactobacillus delbrueckii 1 0 1579 853 1 Lactobacillus acidophilus species species 1 Lactobacillus acetotolerans 1600 0 672 2620435 0 2287 4 no rank 1 Lactobacillus sp. D1501 species 0 2108362 576 species Lactobacillus sp. CBA3605 1 0 2099788 529 512 1545702 0 species Lactobacillus sp. wkB8 1 2099789 0 670 Lactobacillus sp. CBA3606 1 species 1001 109790 0 1 Lactobacillus jensenii species Lactobacillus gasseri 1 species 1596 0 1644 species 1 Lactobacillus gallinarum 817 52242 0 species 1 Lactobacillus johnsonii 2035 0 33959 species Lactobacillus amylolyticus 1 83683 0 648 0 267818 638 Lactobacillus kefiranofaciens 1 species 266 Bacillales order 1 0 1385 660 347076 6183 25 186823 0 1 family 9 Alicyclobacillaceae 1 Alicyclobacillus 2 genus 1624 31 29330 0 1 Alicyclobacillus acidocaldarius species 1593 0 405212 3 Kyrpidia genus 1 23 1143 0 1129704 species 1 Kyrpidia tusciae 0 33943 566 1 Kyrpidia sp. EA-1 species 554 0 2055160 Tumebacillus 3 genus 1 22 3391 0 432330 Tumebacillus avium 1 species 2055 0 1903704 species Tumebacillus algifaecis 1 1214604 0 1314 186817 0 159249 250 1 Bacillaceae 118 family 39 7513 0 84406 genus Virgibacillus 7 1 1 Virgibacillus phasianinus species 2017483 0 1008 1371 0 1482 species Virgibacillus halodenitrificans 1 no rank 2 0 2620237 2496 1 Virgibacillus sp. SK37 species 1103 0 403957 1911587 0 1393 species 1 Virgibacillus sp. 6R 1209 1473 0 species 1 Virgibacillus pantothenticus species Virgibacillus necropolis 1 1390 163877 0 351195 0 950 1 1 Salimicrobium 2 genus 1 Salimicrobium jeotgali species 1230341 0 949 1906945 0 1176 1 1 Parageobacillus 2 genus species Parageobacillus thermoglucosidasius 1 0 1426 1175 1 Bacillus 58 genus 100856 3668 1386 0 species 1 Bacillus smithii 977 1479 0 species Bacillus pumilus 1 3888 1408 0 Bacillus xiamenensis 1 species 0 1178537 855 1182 79883 0 1 Bacillus horikoshii species Bacillus megaterium 1 species 3718 1404 0 991 0 86664 Bacillus flexus 1 species 1 Bacillus methanolicus species 1699 1471 0 653685 0 17173 species group 9 1648923 0 1331 Bacillus paralicheniformis 1 species species subgroup 3 1938374 0 4978 2035 492670 0 species 1 Bacillus velezensis species 1 Bacillus siamensis 659243 0 693 1390 0 2250 Bacillus amyloliquefaciens 1 species 1126 0 119858 species Bacillus sonorensis 1 species 1 Bacillus licheniformis 1402 0 1476 Bacillus atrophaeus 1 species 1452 0 1511 Bacillus subtilis 1 species 0 1423 6519 Bacillus vallismortis 1 species 72361 0 232 1 species group 1792192 0 1184 species Bacillus altitudinis 1 1184 0 293387 0 1547283 1426 Bacillus weihaiensis 1 species species Bacillus cellulosilyticus 1 1413 0 1664 79881 0 99 1 Bacillus gibsonii species species group 10 0 86661 34649 10999 0 1396 species Bacillus cereus 1 3 no rank 0 2750818 3847 1 Bacillus sp. HBCD-sjtu species 1106 0 2053832 Bacillus sp. ABP14 1 species 1892404 0 1037 species Bacillus sp. FDAARGOS_235 1 1704 1839798 0 0 1405 4479 species Bacillus mycoides 1 0 1428 10655 Bacillus thuringiensis 1 species 0 1392 936 species Bacillus anthracis 1 1 Bacillus bombysepticus species 1039 658666 0 1164 155322 0 1 Bacillus toyonensis species 0 580165 1530 1 Bacillus cytotoxicus species 412384 0 1514 species 1 Bacillus aryabhattai 135735 0 2328 1 Bacillus endophyticus species 1024 632773 0 species Bacillus beveridgei 1 1582 324767 0 1 Bacillus infantis species 3107 0 1398 species Bacillus coagulans 1 species 1 Bacillus cohnii 1670 33932 0 1636 0 1664069 1 Bacillus glycinifermentans species Bacillus safensis 1 species 0 561879 1903 12919 0 185979 19 no rank Bacillus sp. FJAT-14266 1 species 1837130 0 906 516 563169 0 1 Bacillus sp. SJ-10 species 705 0 1774743 species 1 Bacillus sp. SDLI1 species Bacillus sp. LM 4-2 1 1628753 0 208 species 1 Bacillus sp. (in: Bacteria) 1409 0 157 2049935 0 168 Bacillus sp. Lzh-5 1 species 1 Bacillus sp. 275 species 1941347 0 524 1127744 0 382 species 1 Bacillus sp. JS Bacillus sp. 1s-1 1 species 0 2026248 953 666686 0 1605 Bacillus sp. 1NLA3E 1 species 1 Bacillus sp. OxB-1 species 784 98228 0 species 1 Bacillus sp. X1(2014) 0 1565991 1238 species 1 Bacillus sp. H15-1 963 1856406 0 1 Bacillus sp. Pc3 species 539 0 1446792 1535 0 1827146 species Bacillus sp. IHB B 7164 1 Bacillus sp. YP1 1 species 0 1574141 296 350 2009331 0 Bacillus sp. MD-5 1 species species 1 Bacillus sp. BH072 295 1570330 0 756828 0 795 1 Bacillus sp. WP8 species 1 genus 0 29331 1324 1324 0 1449 1 Amphibacillus xylanus species 1885 1 182709 0 1 2 Oceanobacillus genus Oceanobacillus iheyensis 1 species 1884 0 182710 0 175304 1070 1 genus Lentibacillus amyloliquefaciens 1 species 1070 0 1472767 5 genus 5857 2675234 0 1467 0 79880 1 Bacillus clausii species Bacillus lehensis 1 species 0 300825 967 species 1 Bacillus pseudofirmus 1343 0 79885 1238 0 199441 species Bacillus krulwichiae 1 1 Bacillus halodurans species 86665 0 842 10550 626 129337 0 1 Geobacillus 15 genus 1921421 0 678 Geobacillus genomosp. 3 1 species 129338 0 871 species Geobacillus subterraneus 1 0 2642459 3585 6 no rank species 1 Geobacillus sp. C56-T3 591 0 691437 364 550542 0 species 1 Geobacillus sp. Y412MC52 species Geobacillus sp. Y412MC61 1 544556 0 431 Geobacillus sp. Y4.1MC1 1 species 581103 0 957 species 1 Geobacillus sp. GHH01 361 0 1233873 881 471223 0 species 1 Geobacillus sp. WCH70 species group 4 1505648 0 2913 567 0 33938 species 1 Geobacillus thermocatenulatus 169283 0 687 1 Geobacillus lituanicus species Geobacillus kaustophilus 1 species 406 1462 0 species Geobacillus thermoleovorans 1 33941 0 1253 33940 0 879 Geobacillus thermodenitrificans 1 species species Geobacillus stearothermophilus 1 998 1422 0 0 150247 8 5224 Anoxybacillus 6 genus 1 2272 2639704 0 no rank 2 species Anoxybacillus sp. B2M1 1 1155 1490052 0 species Anoxybacillus sp. B7M1 1 0 1490057 1117 species 1 Anoxybacillus gonensis 743 0 198467 33934 0 1396 species 1 Anoxybacillus flavithermus 0 294699 805 species 1 Anoxybacillus amylolyticus 3144 0 2675230 genus 2 1 Bacillus kochii species 859143 0 1488 1656 665099 0 species 1 Bacillus oceanisediminis 1 Terribacillus 2 genus 459532 0 1229 1 species Terribacillus aidingensis 1 1228 586416 0 1055323 0 1469 genus 1 Aeribacillus pallidus 1 species 0 33936 1469 2 genus 2675229 0 3057 2013 0 1478 species 1 Bacillus simplex species Bacillus muralis 1 1044 264697 0 400634 0 8620 98 1 genus Lysinibacillus 5 species 1 Lysinibacillus sphaericus 0 1421 4216 1145276 0 1324 Lysinibacillus varians 1 species 1479 0 28031 species 1 Lysinibacillus fusiformis 1503 2636778 0 1 no rank Lysinibacillus sp. YS11 1 species 1503 2072025 0 1 2140 0 45667 genus Halobacillus 3 1 species Halobacillus halophilus 1 0 1570 1186 0 402384 953 Halobacillus mangrovi 1 species 1 genus 3 Fictibacillus 2935 4 1329200 0 Fictibacillus arsenicus 1 species 255247 0 1702 1221500 0 1229 Fictibacillus phosphorivorans 1 species 6110 0 539002 no rank 9 2 no rank 1624 539738 0 10 1624 0 1378 Gemella 2 genus 1 1 no rank 2624949 0 1614 1785995 0 1614 Gemella sp. oral taxon 928 1 species 7 no rank 539742 0 4486 1 Exiguobacterium 7 genus 4486 174 33986 0 818 332410 0 1 Exiguobacterium sibiricum species 754 132920 0 Exiguobacterium antarcticum 1 species no rank 4 2740 0 2644629 1849031 0 649 1 Exiguobacterium sp. U13-1 species 0 1399115 612 species Exiguobacterium sp. MH3 1 species 1 Exiguobacterium sp. ZWU0009 0 1224749 775 360911 0 704 species 1 Exiguobacterium sp. AT1b 1 family Listeriaceae 9 186820 0 10266 23 2755 0 1215 1 1 Brochothrix 2 genus 1214 0 2756 Brochothrix thermosphacta 1 species 1 Listeria 6 genus 9028 91 1637 0 1769 0 1638 1 Listeria ivanovii species 945 1640 0 species 1 Listeria seeligeri 3893 0 1639 Listeria monocytogenes 1 species 0 1643 1437 Listeria welshimeri 1 species 0 1642 893 1 Listeria innocua species 24611 66 186818 0 1 family 26 Planococcaceae 1 Jeotgalibacillus 2 genus 157226 0 1551 1 1 Jeotgalibacillus malaysiensis species 1508404 0 1550 648800 0 3833 20 1 Solibacillus 3 genus 0 76853 2354 species 1 Solibacillus silvestris 2637870 0 1459 no rank 1 2048654 0 1459 Solibacillus sp. R5-41 1 species 0 1569 29 6756 Sporosarcina 5 genus 1 species Sporosarcina psychrophila 1 1101 0 1476 2 no rank 2386 0 2647733 1132 1930546 0 species Sporosarcina sp. P37 1 0 1930764 1254 1 Sporosarcina sp. P33 species 1 Sporosarcina ureae species 0 1571 3240 genus 1 1649 0 1230 1 no rank 1230 0 2644826 species Kurthia sp. 11kri321 1 1230 1750719 0 0 1372 101 10399 genus Planococcus 12 1 816 0 1302659 species 1 Planococcus sp. L10.15 Planococcus halocryophilus 1 species 776 1215089 0 species 1 Planococcus donghaensis 791 0 414778 915 161360 0 1 Planococcus antarcticus species 634 0 1598147 species 1 Planococcus faecalis species Planococcus plakortidis 1 880 1038856 0 0 1374 811 species Planococcus kocurii 1 200991 0 814 Planococcus rifietoensis 1 species 2072 192421 0 species Planococcus maritimus 1 2662419 0 1789 2 no rank 657 1526927 0 Planococcus sp. PAMC 21323 1 species 2058136 0 1132 1 Planococcus sp. MB-3u-03 species 2 Rummeliibacillus genus 1 2 776 0 648802 774 0 241244 Rummeliibacillus stabekisii 1 species 46 Paenibacillaceae family 1 0 186822 268 89781 genus 4 Brevibacillus 1 29 5219 0 55080 2089 1465 0 Brevibacillus laterosporus 1 species species 1 Brevibacillus formosus 0 54913 1045 species 1 Brevibacillus brevis 2056 1393 0 691 79007 0 44249 genus 36 Paenibacillus 1 species 1 Paenibacillus borealis 0 160799 3542 185978 0 28302 no rank 13 1536771 0 2949 species Paenibacillus sp. FSL R5-0912 1 3017 1536772 0 Paenibacillus sp. FSL R7-0273 1 species 1623 1536775 0 Paenibacillus sp. FSL H7-0737 1 species 1336 1536770 0 1 Paenibacillus sp. FSL R5-0345 species species Paenibacillus sp. FSL R7-0331 1 2991 0 1536773 species Paenibacillus sp. IHBB 10380 1 1186 0 1566358 species 1 Paenibacillus sp. FSL P4-0081 3262 0 1536769 1870819 0 1824 species Paenibacillus sp. BIHB4019 1 Paenibacillus sp. Y412MC10 1 species 0 481743 1702 2311 324057 0 species Paenibacillus sp. JDR-2 1 2517 1536774 0 Paenibacillus sp. FSL H7-0357 1 species 1695218 0 1844 species 1 Paenibacillus sp. 32O-W 1 Paenibacillus sp. lzh-N1 species 2069255 0 1740 0 1464 1955 species Paenibacillus larvae 1 species group 1 2533 2044880 0 species Paenibacillus riograndensis 1 2533 0 483937 2526 189425 0 species 1 Paenibacillus graminis 0 44251 3484 1 Paenibacillus durus species 1 Paenibacillus odorifer species 1385 0 189426 1443 0 59893 Paenibacillus peoriae 1 species Paenibacillus kribbensis 1 species 1283 172713 0 159743 0 1317 species Paenibacillus terrae 1 1168 0 1178515 Paenibacillus swuensis 1 species 3479 0 61624 1 Paenibacillus mucilaginosus species Paenibacillus beijingensis 1 species 1126833 0 2172 1 Paenibacillus xylanexedens species 1528 0 528191 3212 169760 0 Paenibacillus stellifer 1 species 1 Paenibacillus polymyxa species 0 1406 5052 2112 0 1616788 species Paenibacillus bovis 1 1515 162209 0 species 1 Paenibacillus naphthalenovorans species Paenibacillus crassostreae 1 0 1763538 1351 species Paenibacillus yonginensis 1 1816 0 1462996 Paenibacillus sabinae 1 species 0 365617 2032 Paenibacillus ihbetae 1 species 1870820 0 2091 414771 0 3018 Paenibacillus donghaensis 1 species 76632 0 2673 6 1 genus 2 Thermobacillus species Thermobacillus composti 1 2667 0 377615 no rank 3 2614 85151 0 1 Aneurinibacillus 3 genus 55079 0 2614 4 2642329 0 959 1 no rank 959 0 1450761 species 1 Aneurinibacillus sp. XH2 0 1500254 1651 1 Aneurinibacillus soli species 1402 1 186821 0 1 family Sporolactobacillaceae 2 no rank 1 1401 0 663587 [Bacillus] selenitireducens 1 species 1401 0 85683 family Thermoactinomycetaceae 4 1 4 899 0 186824 883 35 1677050 0 1 genus Novibacillus 2 Novibacillus thermophilus 1 species 848 1471761 0 292635 0 12 genus Laceyella 1 90964 0 47915 882 1 Staphylococcaceae 42 family 0 2005363 19 792 genus 2 Auricoccucs 1 1849491 0 773 species 1 Auricoccus indicus 1 genus Salinicoccus 2 943 10 45669 0 407035 0 933 1 Salinicoccus halodurans species 1 Macrococcus 4 genus 3501 26 69965 0 0 1855823 1053 species 1 Macrococcus canis 1 no rank 0 2619255 1105 species 1 Macrococcus sp. IME1552 1105 0 1898474 1317 0 69966 species 1 Macrococcus caseolyticus 742 41797 0 1279 genus 33 Staphylococcus 1 species Staphylococcus xylosus 1 1699 1288 0 0 1286 927 species 1 Staphylococcus simulans 1236 0 283734 1 Staphylococcus pseudintermedius species 1285 0 70255 species Staphylococcus condimenti 1 0 29385 1387 1 Staphylococcus saprophyticus species species 1 Staphylococcus succinus 61015 0 990 species Staphylococcus lutrae 1 0 155085 455 0 45972 2663 Staphylococcus pasteuri 1 species species 1 Staphylococcus pettenkoferi 675 0 170573 1344 0 28035 species 1 Staphylococcus lugdunensis 643214 0 1297 species Staphylococcus stepanovicii 1 1201 0 1292 Staphylococcus warneri 1 species 0 1282 2126 1 Staphylococcus epidermidis species species Staphylococcus equorum 1 0 246432 1379 0 70258 902 species Staphylococcus piscifermentans 1 species 1 Staphylococcus hominis 1290 0 1546 1126 1283 0 Staphylococcus haemolyticus 1 species 0 29382 1216 Staphylococcus cohnii 1 species 0 308354 1209 species Staphylococcus simiae 1 861 1294 0 species Staphylococcus muscae 1 species Staphylococcus nepalensis 1 214473 0 1180 species 1 Staphylococcus schleiferi 0 1295 1090 no rank 1 0 91994 1249 0 1715860 1249 species Staphylococcus sp. AntiMn-1 1 species Staphylococcus sciuri 1 0 1296 1181 0 985002 991 species 1 Staphylococcus argenteus species Staphylococcus agnetis 1 985762 0 781 1 Staphylococcus capitis species 1412 0 29388 1151 0 29384 species 1 Staphylococcus kloosii 947 0 46127 Staphylococcus felis 1 species Staphylococcus aureus 1 species 3997 1280 0 species 1 Staphylococcus carnosus 0 1281 1057 species 1 Staphylococcus hyicus 1284 0 495 2037 0 33974 2 no rank genus 2 Ndongobacter 1 0 1930845 18 2037 species Ndongobacter massiliensis 1 2019 1871025 0 class 223 Clostridia 1 273 6490768 0 186801 68295 0 35045 21 1 Thermoanaerobacterales 38 order 15406 26 186814 0 1 family 20 Thermoanaerobacteraceae genus 2 Caldanaerobacter 1 3 1323 0 249529 0 911092 1320 species 1 Caldanaerobacter subterraneus 140458 0 630 7 1 genus 2 Thermacetogenium species 1 Thermacetogenium phaeum 85874 0 623 no rank 4 0 42857 1804 1092 3 44260 0 1 Moorella 2 genus 1089 1525 0 Moorella thermoacetica 1 species 1 genus 2 Ammonifex 42837 0 712 3 0 42838 709 1 Ammonifex degensii species Thermoanaerobacter 9 genus 1 417 10886 0 1754 1223 496866 0 1 Thermoanaerobacter pseudethanolicus species species 1 Thermoanaerobacter mathranii 0 583357 1269 Thermoanaerobacter brockii 1 species 0 29323 1223 no rank 2 0 2636821 2689 species 1 Thermoanaerobacter sp. X513 573062 0 1472 1217 399726 0 species 1 Thermoanaerobacter sp. X514 1 Thermoanaerobacter wiegelii species 0 46354 1381 species 1 Thermoanaerobacter italicus 108150 0 1421 1 Thermoanaerobacter kivui species 0 2325 1263 2 Carboxydothermus genus 1 0 129957 1 737 Carboxydothermus hydrogenoformans 1 species 736 129958 0 1 family 13 Thermoanaerobacterales Family III. Incertae Sedis 543371 0 17526 26 12021 302 44000 0 1 genus 9 Caldicellulosiruptor 52765 0 1704 Caldicellulosiruptor kristjanssonii 1 species 1 Caldicellulosiruptor hydrothermalis species 1326 0 413888 Caldicellulosiruptor kronotskyensis 1 species 1467 0 413889 1492 44001 0 species 1 Caldicellulosiruptor saccharolyticus 31899 0 1526 species Caldicellulosiruptor bescii 1 1 Caldicellulosiruptor obsidiansis species 1294 717609 0 52766 0 1581 Caldicellulosiruptor lactoaceticus 1 species 1329 55205 0 Caldicellulosiruptor owensensis 1 species 5479 8 28895 0 1 Thermoanaerobacterium 3 genus 29329 0 2227 species Thermoanaerobacterium xylanolyticum 1 species Thermoanaerobacterium thermosaccharolyticum 1 1517 0 3244 543372 0 1521 13 1 family 3 Thermoanaerobacterales Family IV. Incertae Sedis 1508 102 252965 0 1 2 Mahella genus species Mahella australiensis 1 0 252966 1406 571 0 227387 1 family 1 genus 0 227388 571 Thermodesulfobium narugense 1 species 571 0 184064 2770089 0 2561 3 order 2 family 2770093 0 903 0 291988 4 903 2 Thermosediminibacter genus 1 species Thermosediminibacter oceani 1 291990 0 899 1 family 1658 2770092 0 1658 0 499228 1 genus 499229 0 1658 Tepidanaerobacter acetatoxydans 1 species 6477 4 53433 0 1 12 Halanaerobiales order 0 972 26 4003 Halanaerobiaceae 6 family 1 857 8 32636 0 1 genus Halothermothrix 2 849 0 31909 species Halothermothrix orenii 1 3120 17 2330 0 1 genus 3 Halanaerobium 2331 0 1536 Halanaerobium praevalens 1 species species Halanaerobium hydrogeniformans 1 1567 656519 0 0 53434 7 2470 5 Halobacteroidaceae family 1 0 42417 3 1324 genus Halobacteroides 2 1 1 Halobacteroides halobius species 1321 42422 0 0 28186 1 1139 genus 2 Acetohalobium 1 0 28187 1138 species 1 Acetohalobium arabaticum 186802 0 6445487 10624 1 order Clostridiales 165 family Ruminococcaceae 12 1 454 2051893 0 541000 0 253238 29 10914 2 Ethanoligenens genus 1 species Ethanoligenens harbinense 1 253239 0 10885 1902407 517 216851 0 1 genus 2 Faecalibacterium 1901890 0 853 Faecalibacterium prausnitzii 1 species 946234 0 40257 107 1 genus 2 Flavonifractor 40150 292800 0 species Flavonifractor plautii 1 no rank 1 10317 2305133 0 species Ruminococcaceae bacterium CPB6 1 0 1572656 10317 no rank 1 552397 0 5418 [Clostridium] cellulosi 1 species 29343 0 5418 82126 220 1263 0 1 genus 3 Ruminococcus Ruminococcus bicirculans 1 species 0 1160721 62832 species 1 Ruminococcus albus 0 1264 19074 0 543349 14 3012 family Symbiobacteriaceae 3 1 2733 0 2998 12 1 Symbiobacterium 2 genus 2986 2734 0 1 Symbiobacterium thermophilum species 1 41 Clostridiaceae family 197580 457 31979 0 8 3686 0 390805 genus 2 Geosporobacter 1 species 1 Geosporobacter ferrireducens 3678 1424294 0 1 Clostridium 30 genus 1485 0 184258 941 1 Clostridium argentinense species 0 29341 4300 1 Clostridium saccharoperbutylacetonicum species 7621 0 36745 no rank 2 27805 0 2614128 1 Clostridium sp. SY8519 species 22721 0 1042156 5084 0 755731 species 1 Clostridium sp. BNL1100 3187 84023 0 Clostridium autoethanogenum 1 species 4226 0 1494 Clostridium cochlearium 1 species species 1 Clostridium cellulovorans 5448 1493 0 species 1 Clostridium botulinum 27178 1491 0 1 Clostridium acetobutylicum species 1488 0 3667 Clostridium novyi 1 species 1542 0 3740 1 Clostridium formicaceticum species 0 1497 2574 2751 0 1519 Clostridium tyrobutyricum 1 species species 1 Clostridium estertheticum 238834 0 3732 0 394958 4929 1 Clostridium taeniosporum species species Clostridium butyricum 1 7439 0 1492 5152 0 1513 species 1 Clostridium tetani 5340 0 1534 Clostridium kluyveri 1 species 169679 0 5130 species Clostridium saccharobutylicum 1 species 1 Clostridium ljungdahlii 0 1538 3263 4971 0 1216932 Clostridium bornimense 1 species species 1 Clostridium carboxidivorans 5092 0 217159 0 84022 2272 Clostridium aceticum 1 species 7505 0 1502 species 1 Clostridium perfringens 1 Clostridium chauvoei species 4385 0 46867 1520 0 8242 species Clostridium beijerinckii 1 0 1509 4137 Clostridium sporogenes 1 species 6735 1561 0 1 Clostridium baratii species 1548 0 5217 species Clostridium scatologenes 1 1 Clostridium pasteurianum species 7279 0 1501 84 4409 0 49082 4 Candidatus Arthromitus genus 1 0 2638829 4325 no rank 3 1508644 0 1306 Candidatus Arthromitus sp. SFB-mouse-NL 1 species species 1 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 0 1641 1 Candidatus Arthromitus sp. SFB-mouse species 0 49118 1378 4611 15 114627 0 1 genus Alkaliphilus 3 461876 0 1979 Alkaliphilus oremlandii 1 species 208226 0 2617 1 Alkaliphilus metalliredigens species 1981033 0 159 genus 1 Mordavella 0 186804 296 84998 Peptostreptococcaceae 12 family 1 2 Acetoanaerobium genus 1 1 2396 0 186831 2395 0 1511 species 1 Acetoanaerobium sticklandii 1895 0 1411023 1 no rank Peptostreptococcaceae bacterium oral taxon 929 1 species 0 2081703 1895 genus Filifactor 2 1 5 2414 0 44259 Filifactor alocis 1 species 2409 143361 0 1 2 Clostridioides genus 70664 226 1870884 0 Clostridioides difficile 1 species 0 1496 70438 0 1481960 6 2546 2 Peptoclostridium genus 1 1 Peptoclostridium acidaminophilum species 2540 0 1731 1849828 0 4787 16 1 genus Paeniclostridium 2 species Paeniclostridium sordellii 1 0 1505 4771 family 12 2304686 0 48598 1 genus 3445 0 2304691 1 [Clostridium] stercorarium species 3445 0 1510 2898 11 1637257 0 1 Mageeibacillus 2 genus species Mageeibacillus indolicus 1 2887 884684 0 0 2304693 3905 genus 1 0 84032 3905 species [Clostridium] thermosuccinogenes 1 no rank 1 19378 2305130 0 19378 1834198 0 1 Ruminiclostridium sp. KB18 species 433 5925 0 1508657 genus 2 Ruminiclostridium 1 [Clostridium] cellulolyticum 1 species 5492 0 1521 genus 3 11089 2304692 0 4326 288965 0 species [Clostridium] clariflavum 1 1677857 0 2647 1 Herbivorax saccincola species species Ruminiclostridium thermocellum 1 0 1515 4116 1 genus 2 Fastidiosipila 1958 1 236752 0 species Fastidiosipila sanguinis 1 1957 0 236753 1 family Syntrophomonadaceae 4 1221 27 68298 0 1 genus 499 0 129001 species Syntrophothermus lipocalidus 1 0 86170 499 0 862 1 695 genus 2 Syntrophomonas 1 Syntrophomonas wolfei 1 species 694 863 0 26578 16 990719 0 1 family 3 Christensenellaceae genus 2 Christensenella 1 311 26562 0 990721 species 1 Christensenella massiliensis 26251 1805714 0 0 186807 140 35931 Peptococcaceae 29 family 1 53 7314 0 56112 genus 4 Dehalobacter 1 55583 0 2082 species 1 Dehalobacter restrictus 2 no rank 0 2635733 5179 Dehalobacter sp. DCA 1 species 1147129 0 2447 0 1131462 2732 Dehalobacter sp. CF 1 species genus 1 2282740 0 2157 1 Desulfotomaculum gibsoniae species 0 102134 2157 3245 6 51514 0 1 genus Dehalobacterium 2 3239 0 51515 species Dehalobacterium formicoaceticum 1 1 2 Syntrophobotulus genus 2153 1 51196 0 51197 0 2152 species 1 Syntrophobotulus glycolicus 0 278993 4 1272 genus 2 Thermincola 1 1268 863643 0 species 1 Thermincola potens 1 genus 5 Desulfitobacterium 7988 191 36853 0 142877 0 1339 1 Desulfitobacterium metallireducens species species Desulfitobacterium dehalogenans 1 0 36854 1924 1584 0 233055 1 Desulfitobacterium dichloroeliminans species 0 49338 2950 Desulfitobacterium hafniense 1 species genus 1 0 2282742 1359 0 58138 1359 species 1 Desulfotomaculum acetoxidans 5019 89 1562 0 1 genus 5 Desulfotomaculum 1697 0 1564 1 Desulfotomaculum ruminis species species Desulfotomaculum ferrireducens 1 1171 1833852 0 1 Desulfotomaculum reducens species 0 59610 1070 1 Desulfotomaculum nigrificans species 1565 0 992 1 Desulfosporosinus 4 genus 79206 0 4366 44 1573 0 79209 Desulfosporosinus meridiei 1 species species Desulfosporosinus acidiphilus 1 0 885581 1196 species Desulfosporosinus orientis 1 1553 0 1563 918 6 471826 0 1 genus 2 Candidatus Desulforudis 1 Candidatus Desulforudis audaxviator species 0 471827 912 family Eubacteriaceae 5 1 30 17009 0 186806 0 1730 446 14845 Eubacterium 2 genus 1 14399 0 1736 species 1 Eubacterium limosum 2 Acetobacterium genus 1 6 2134 0 33951 1 Acetobacterium woodii species 33952 0 2128 1 family Heliobacteriaceae 3 31984 0 2578 8 2 Heliobacterium genus 1 32 2570 0 2697 2538 35701 0 species Heliobacterium modesticaldum 1 1 3 Oscillospiraceae family 22053 9 216572 0 1 2 Oscillibacter genus 459786 0 22044 89 351091 0 21955 Oscillibacter valericigenes 1 species 0 538999 130263 no rank 10 2717089 0 54431 1 genus 1 Mordavella sp. Marseille-P3756 species 2086584 0 54431 539000 0 1735 51 1 family Clostridiales Family XVII. Incertae Sedis 3 genus Thermaerobacter 2 1 27 1684 0 73918 1 Thermaerobacter marianensis species 1657 0 73919 403 68334 0 1392389 Intestinimonas 2 genus 1 0 1297617 67931 species 1 Intestinimonas butyriciproducens 1 4 Clostridiales Family XIII. Incertae Sedis family 5763 17 543314 0 Mogibacterium 2 genus 1 10 2967 0 86331 Mogibacterium diversum 1 species 2957 114527 0 2779 143393 0 [Eubacterium] sulci 1 species family 27 Lachnospiraceae 1 1193 3813149 0 186803 103500 0 2569097 genus 1 species 1 [Eubacterium] hallii 103500 39488 0 698776 0 5633 40 1 genus 2 Cellulosilyticum 5593 0 29360 species 1 Cellulosilyticum lentocellum 1556054 0 186928 no rank 2 19641 0 712991 species Lachnospiraceae bacterium oral taxon 500 1 [Eubacterium] rectale 1 species 39491 0 1536413 0 572511 77 119671 genus 3 Blautia 1 0 2648079 33970 1 no rank species 1 Blautia sp. YL58 0 1796616 33970 Blautia hansenii 1 species 85624 1322 0 0 207244 177 181933 genus Anaerostipes 2 1 181756 0 649756 1 Anaerostipes hadrus species 28050 0 1221296 1 genus 0 39485 1221296 species 1 [Eubacterium] eligens 0 841 26 357360 Roseburia 2 genus 1 0 301301 357334 species Roseburia hominis 1 1 genus Butyrivibrio 3 830 0 33954 13 1 Butyrivibrio hungatei species 16487 185008 0 Butyrivibrio proteoclasticus 1 species 43305 0 17454 9 6094 0 2039240 genus Anaerotignum 2 1 Anaerotignum propionicum 1 species 0 28446 6085 2719231 0 27702 1 genus 84030 0 27702 1 [Clostridium] saccharolyticum species 1 2 Herbinix genus 9267 2 1663717 0 species 1 Herbinix luporum 9265 1679721 0 90880 0 2719313 1 genus 0 208479 90880 1 [Clostridium] bolteae species genus Lachnoclostridium 4 1 363 98612 0 1506553 no rank 1 35411 0 2608895 Lachnoclostridium sp. YL32 1 species 0 1834196 35411 Lachnoclostridium phytofermentans 1 species 66219 0 13046 species Lachnoclostridium phocaeense 1 0 1871021 49792 0 485256 1 925 order 4 Natranaerobiales 1 1 Natranaerobiaceae 3 family 485255 0 924 8 22 916 0 375928 genus 2 Natranaerobius 1 species Natranaerobius thermophilus 1 375929 0 894 1676648 0 1386 2 1 class 5 Limnochordia 0 1676649 14 1384 Limnochordales 4 order 1 family Limnochordaceae 3 1 0 1676650 22 1370 0 1676651 10 1348 2 Limnochorda genus 1 1 Limnochorda pilosa species 1555112 0 1338 670757 84 201174 0 1 phylum 652 Actinobacteria Acidimicrobiia 6 class 1 0 84992 1 948 order Acidimicrobiales 5 1 0 84993 19 947 2448023 0 715 2 family 715 9 682522 0 1 genus 2 Ilumatobacter 706 467094 0 species Ilumatobacter coccineus 1 5 213 0 84994 family 2 Acidimicrobiaceae 1 1 genus 208 0 53634 Acidimicrobium ferrooxidans 1 species 208 0 53635 84998 0 67809 696 1 Coriobacteriia 32 class 31144 375 84999 0 1 order Coriobacteriales 14 19839 369 84107 0 1 6 Coriobacteriaceae family 1 no rank 0 84113 2174 species 1 Coriobacteriaceae bacterium 68-1-3 1531429 0 2174 15589 35 102106 0 1 2 Collinsella genus 1 Collinsella aerofaciens species 0 74426 15554 1 1707 0 33870 Coriobacterium 2 genus 1 1 Coriobacterium glomerans species 33871 0 1706 116 10930 0 1643824 7 Atopobiaceae family 1 0 2767353 1055 1 genus 1382 0 1055 species 1 Atopobium parvulum Atopobium 1 genus 0 1380 2 1 genus 4 Olsenella 133925 0 9757 125 species 1 Olsenella sp. Marseille-P2300 0 1805478 4791 1832 2638792 0 1 no rank 1832 0 712411 Olsenella sp. oral taxon 807 1 species species Olsenella uli 1 3009 0 133926 1643822 0 35969 785 1 Eggerthellales 17 order 1 family Eggerthellaceae 16 35184 4119 1643826 0 84111 0 9810 178 1 Eggerthella 3 genus species Eggerthella lenta 1 7052 0 84112 no rank 1 2580 2648737 0 2580 502558 0 species 1 Eggerthella sp. YY7918 genus 1 0 1981050 1427 0 1944646 1427 1 Phoenicibacter massiliensis species genus Denitrobacterium 2 1 0 79603 9 2250 species Denitrobacterium detoxificans 1 79604 0 2241 7 4091 0 447020 Adlercreutzia 2 genus 1 species Adlercreutzia equolifaciens 1 446660 0 4084 genus Gordonibacter 3 1 0 644652 44 8797 species Gordonibacter urolithinfaciens 1 1335613 0 4496 1 Gordonibacter massiliensis species 1841863 0 4257 1 792 0 84162 genus 2 Cryptobacterium 1 791 0 84163 species 1 Cryptobacterium curtum 0 84108 11 3898 2 Slackia genus 1 Slackia heliotrinireducens 1 species 0 84110 3887 class Rubrobacteria 6 1 0 84995 8 1406 1398 24 84996 0 1 5 Rubrobacterales order 1 Rubrobacteraceae 4 family 84997 0 1374 23 1 Rubrobacter 3 genus 1351 48 42255 0 1 Rubrobacter radiotolerans species 42256 0 515 0 49319 788 species 1 Rubrobacter xylanophilus 1760 0 598387 3967 1 599 Actinobacteria class 1643684 0 1037 1 1 Nakamurellales 4 order 3 Nakamurellaceae family 1 22 1036 0 85031 Nakamurella 2 genus 1 0 53460 6 1014 53461 0 1008 1 Nakamurella multipartita species 0 85013 32 3469 order 7 Frankiales 1 family Frankiaceae 6 1 50 3437 0 74712 1 Frankia 5 genus 3387 30 1854 0 1 no rank 0 2632575 871 298653 0 871 Frankia sp. EAN1pec 1 species 1 Frankia alni species 0 1859 891 1079 298654 0 1 Frankia inefficax species Frankia casuarinae 1 species 516 106370 0 1260 1 85014 0 1 order 4 Glycomycetales family 3 Glycomycetaceae 1 0 85034 16 1259 1243 8 283810 0 1 Stackebrandtia 2 genus 1235 283811 0 Stackebrandtia nassauensis 1 species 90435 176 85011 0 1 order Streptomycetales 82 519 90259 0 2062 family Streptomycetaceae 81 1 5457 54 2063 0 1 genus 5 Kitasatospora 1 no rank 2633591 0 1607 2018025 0 1607 species 1 Kitasatospora sp. MMS16-BH015 1 Kitasatospora aureofaciens species 1894 0 1113 2066 0 1534 species 1 Kitasatospora setae species Kitasatospora albolonga 1 1149 68173 0 1 genus Streptomyces 75 1883 0 84283 2853 Streptomyces gilvosporeus 1 species 0 553510 1132 species Streptomyces sp. S10(2016) 1 1783515 0 1102 species Streptomyces xiamenensis 1 408015 0 1089 species Streptomyces pratensis 1 1169025 0 703 Streptomyces cyaneogriseus 1 species 985 0 68192 937 67267 0 Streptomyces alboflavus 1 species 951 1616117 0 Streptomyces formicae 1 species species 1 Streptomyces niveus 0 193462 909 2141 0 1888 species 1 Streptomyces albus 164348 0 1176 Streptomyces puniciscabiei 1 species 933 1940 0 Streptomyces albireticuli 1 species 1599 379067 0 species 1 Streptomyces bingchenggensis Streptomyces hygroscopicus 1 species 1912 0 2705 2796 47763 0 1 Streptomyces lydicus species species 1 Streptomyces cattleya 1264 0 29303 0 1916 905 species 1 Streptomyces lividans 1 Streptomyces peucetius species 1950 0 814 1798 54571 0 species Streptomyces venezuelae 1 species 1 Streptomyces alfalfae 1032 0 1642299 species Streptomyces glaucescens 1 1098 0 1907 1013 0 33903 species Streptomyces avermitilis 1 Streptomyces griseochromogenes 1 species 1044 0 68214 38300 0 986 species Streptomyces pristinaespiralis 1 species 1 Streptomyces rubrolavendulae 285473 0 897 species 1 Streptomyces fulvissimus 0 68202 778 Streptomyces pactum 1 species 0 68249 1932 species Streptomyces ambofaciens 1 1889 0 931 0 42684 825 Streptomyces collinus 1 species 0 1901 1010 species 1 Streptomyces clavuligerus Streptomyces reticuli 1 species 1015 1926 0 1 Streptomyces pluripotens species 667 0 1355015 0 1971 1067 species 1 Streptomyces noursei 1160 92644 0 species Streptomyces malaysiensis 1 1069 1437453 0 species 1 Streptomyces leeuwenhoekii 0 629295 1812 species group 2 species subgroup 1 1482558 0 853 853 0 1908 species Streptomyces globisporus 1 species subgroup 1 1482596 0 959 1 Streptomyces griseus species 1911 0 959 1203 362257 0 Streptomyces vietnamensis 1 species 917 1935 0 Streptomyces violaceoruber 1 species 24 no rank 24306 0 2593676 1217 1495638 0 1 Streptomyces sp. M56 species Streptomyces sp. Tue 6075 1 species 1661694 0 835 species Streptomyces sp. CNQ-509 1 1144 444103 0 939 0 1964449 Streptomyces sp. 3211 1 species 862 234612 0 species 1 Streptomyces sp. TN58 species Streptomyces sp. CCM_MD2014 1 1561022 0 990 922 1812480 0 species Streptomyces sp. fd1-xmd 1 0 2059884 1351 species Streptomyces sp. CMB-StM0423 1 1344 1841249 0 1 Streptomyces sp. RTd22 species species 1 Streptomyces sp. FR-008 1078 0 206662 1195 0 2135430 species Streptomyces sp. P3 1 species Streptomyces sp. Sge12 1 0 1972846 1122 species Streptomyces sp. Mg1 1 1091 0 465541 species 1 Streptomyces sp. CdTB01 0 1725411 1277 2094021 0 784 species Streptomyces sp. WAC00288 1 species Streptomyces sp. PAMC 26508 1 680 0 1265601 0 1961713 948 1 Streptomyces sp. MOE7 species 819 0 1984801 species 1 Streptomyces sp. CLI2509 species Streptomyces sp. SirexAA-E 1 862751 0 761 0 1751294 817 species 1 Streptomyces sp. 4F 1 Streptomyces sp. CFMR 7 species 905 1649184 0 1 Streptomyces sp. S8 species 1837283 0 743 1262452 0 1456 species 1 Streptomyces sp. 769 species 1 Streptomyces sp. SAT1 1026 0 1849967 75293 0 1115 Streptomyces autolyticus 1 species 1206 68280 0 Streptomyces violaceusniger 1 species 0 146923 1129 species 1 Streptomyces parvulus 0 2049881 802 species Streptomyces sp. XZHG99 1 Streptomyces chartreusis 1 species 0 1969 1119 2 species group 1477431 0 1894 1902 0 899 1 Streptomyces coelicolor species 995 42239 0 Streptomyces sampsonii 1 species 1188 0 68570 species Streptomyces albulus 1 species Streptomyces lavendulae 1 1914 0 901 species 1 Streptomyces xinghaiensis 1038928 0 950 1228 0 1930 species Streptomyces scabiei 1 Streptomyces lincolnensis 1 species 1197 0 1915 1 33 Propionibacteriales order 16249 100 85009 0 1 family 13 Nocardioidaceae 85015 0 5732 67 47 2456 0 1839 4 Nocardioides genus 1 species Nocardioides dokdonensis 1 817 450734 0 0 2045452 733 species 1 Nocardioides sp. 78 no rank 1 859 2615069 0 859 196162 0 species Nocardioides sp. JS614 1 22 888 0 2044 genus 2 Pimelobacter 1 2045 0 866 Pimelobacter simplex 1 species 2 Kribbella genus 1 10 899 0 182639 Kribbella flavida 1 species 182640 0 889 1 genus 2 Micropruina 713 14 116071 0 1 Micropruina glycogenica species 699 0 75385 0 2040 13 709 Aeromicrobium 2 genus 1 696 2041 0 species Aeromicrobium erythreum 1 31957 0 10417 117 1 family 19 Propionibacteriaceae genus 4 Cutibacterium 1 0 1912216 20 1816 Cutibacterium acnes 1 species 0 1747 581 species Cutibacterium granulosum 1 33011 0 409 species 1 Cutibacterium avidum 806 0 33010 genus 1 604 2801844 0 604 0 1750 Pseudopropionibacterium propionicum 1 species 1743 0 1719 35 1 3 Propionibacterium genus 1 Propionibacterium freudenreichii species 1328 1744 0 no rank 1 2608905 0 356 Propionibacterium sp. oral taxon 193 1 species 0 671223 356 1 2 Microlunatus genus 29404 0 704 4 29405 0 700 1 Microlunatus phosphovorus species 72763 0 3366 32 1 genus 5 Tessaracoccus 1011 1332264 0 species 1 Tessaracoccus aquimaris 1 Tessaracoccus flavescens species 399497 0 748 1610493 0 666 species 1 Tessaracoccus flavus 0 2635419 909 1 no rank species Tessaracoccus sp. T2.5-30 1 1909732 0 909 1 Acidipropionibacterium 2 genus 1304 11 1912215 0 1 Acidipropionibacterium acidipropionici species 0 1748 1293 0 203133 787 genus 1 1 no rank 0 2633994 787 Propionimicrobium sp. Marseille-P3275 1 species 787 0 1871034 252 0 52018 1 no rank 1650658 0 252 species 1 Actinobacteria bacterium IMCC26256 2674 8 2039638 0 1 12 Candidatus Nanopelagicales order 0 2162846 2666 family 11 4 802 0 2039639 genus Candidatus Nanopelagicus 4 1 1 Candidatus Nanopelagicus abundans species 371 0 1884916 220 1884915 0 species 1 Candidatus Nanopelagicus hibericus species Candidatus Nanopelagicus limnes 1 207 0 1884634 622681 0 1864 12 1 7 Candidatus Planktophila genus species 1 Candidatus Planktophila versatilis 1884905 0 420 1 Candidatus Planktophila limnetica species 168 573600 0 species Candidatus Planktophila vernalis 1 244 0 1884907 1 Candidatus Planktophila dulcis species 490 0 1884914 1 Candidatus Planktophila sulfonica species 261 0 1884904 269 0 1884913 1 Candidatus Planktophila lacus species 164 245790 0 85004 26 Bifidobacteriales order 1 1 25 Bifidobacteriaceae family 245626 4263 31953 0 0 2701 6 1551 genus Gardnerella 2 1 1545 2702 0 species Gardnerella vaginalis 1 196081 0 361 genus 1 species Scardovia inopinata 1 361 0 78259 genus Bifidobacterium 19 1 0 1678 633 238524 1 Bifidobacterium choerinum species 1141 35760 0 216816 0 52127 Bifidobacterium longum 1 species species Bifidobacterium dentium 1 1747 0 1689 Bifidobacterium pseudocatenulatum 1 species 28026 0 82740 species 1 Bifidobacterium thermophilum 2343 0 33905 1 Bifidobacterium breve species 14710 1685 0 1823 0 1694 Bifidobacterium pseudolongum 1 species 1681 0 25255 species Bifidobacterium bifidum 1 10520 31386 0 1686 species Bifidobacterium catenulatum 2 1 20866 0 630129 subspecies 1 Bifidobacterium kashiwanohense 2168 158787 0 species 1 Bifidobacterium scardovii species Bifidobacterium asteroides 1 0 1684 955 15050 1680 0 Bifidobacterium adolescentis 1 species 2994 1683 0 species 1 Bifidobacterium angulatum 574 0 1687 Bifidobacterium coryneforme 1 species 638619 0 793 species Bifidobacterium actinocoloniiforme 1 species 1 Bifidobacterium indicum 0 1691 597 1488 0 28025 1 Bifidobacterium animalis species 927 3 196082 0 1 Parascardovia 2 genus 78258 0 924 Parascardovia denticolens 1 species 0 2037 45 14640 order 20 Actinomycetales 1 Actinomycetaceae 19 family 1 0 2049 4174 14595 582 0 2529408 genus 1 species Actinomyces meyeri 1 582 52773 0 1 genus Actinomyces 9 1654 0 5738 116 544580 0 961 species 1 Actinomyces oris Actinomyces radicidentis 1 species 111015 0 907 species 1 Actinomyces gaoshouyii 0 1960083 489 2502 2609248 0 3 no rank 2081702 0 804 species 1 Actinomyces sp. oral taxon 897 0 712122 994 Actinomyces sp. oral taxon 414 1 species Actinomyces sp. Chiba101 1 species 1851395 0 704 516 0 1852377 species 1 Actinomyces pacaensis 1 Actinomyces sp. VUL4_3 species 0 1912795 247 28263 0 456 3 1 genus Arcanobacterium 2 453 0 28264 species 1 Arcanobacterium haemolyticum 1043 5 1069494 0 1 genus Trueperella 2 species 1 Trueperella pyogenes 0 1661 1038 0 2050 83 2100 2 Mobiluncus genus 1 species 1 Mobiluncus curtisii 2017 2051 0 9 502 0 1653174 Actinotignum 2 genus 1 493 0 59505 Actinotignum schaalii 1 species order 8 Geodermatophilales 1 0 1643682 7 2976 1 family 7 Geodermatophilaceae 85030 0 2969 52 1 genus 2 Modestobacter 88138 0 1193 31 1162 477641 0 species 1 Modestobacter marinus 1 genus 2 Blastococcus 38501 0 633 7 0 138336 626 1 Blastococcus saxobsidens species Geodermatophilus 2 genus 1 0 1860 14 1091 0 1861 1077 species 1 Geodermatophilus obscurus 1 Catenulisporales 4 order 1775 3 414714 0 family 3 Catenulisporaceae 1 0 414877 11 1772 2 Catenulispora genus 1 0 414878 19 1761 304895 0 1742 species Catenulispora acidiphila 1 0 1643818 690 no rank 2 1 2 Thermobispora genus 147067 0 690 4 0 2006 686 Thermobispora bispora 1 species 1 306 0 1643683 Acidothermales 4 order 1 family Acidothermaceae 3 1 0 85032 3 305 28048 0 302 3 1 Acidothermus 2 genus 0 28049 299 1 Acidothermus cellulolyticus species 510 63306 0 85006 Micrococcales 144 order 1 0 145357 8 1985 family Dermacoccaceae 7 1 0 745364 4 688 Luteipulveratus 2 genus 1 species 1 Luteipulveratus mongoliensis 684 0 571913 Kytococcus 2 genus 1 8 605 0 57499 Kytococcus sedentarius 1 species 0 1276 597 2 Dermacoccus genus 1 3 684 0 57495 Dermacoccus nishinomiyaensis 1 species 0 1274 681 family Intrasporangiaceae 9 1 0 85021 24 2988 0 53457 17 577 2 Janibacter genus 1 species Janibacter indicus 1 857417 0 560 2 Arsenicicoccus genus 1 0 267408 6 1048 1 no rank 0 2663846 1042 0 1658671 1042 species 1 Arsenicicoccus sp. oral taxon 190 1 genus 2 Serinicoccus 265976 0 857 6 851 0 1758689 species Serinicoccus sp. JLT9 1 genus 2 Intrasporangium 1 7 482 0 53357 1 Intrasporangium calvum species 475 53358 0 1 3 Sanguibacteraceae family 145360 0 792 4 60919 0 788 7 1 genus Sanguibacter 2 0 60920 781 1 Sanguibacter keddieii species 22280 566 1268 0 1 Micrococcaceae 38 family 8 690 0 1269 genus 2 Micrococcus 1 1 Micrococcus luteus species 1270 0 682 327 0 1645 genus 1 327 1646 0 species 1 Renibacterium salmoninarum 1 748 0 596707 genus Sinomonas 2 1 1 Sinomonas atrocyanea species 0 37927 747 26 2564 0 1742993 genus 4 Pseudarthrobacter 1 0 121292 894 species Pseudarthrobacter sulfonivorans 1 361575 0 762 Pseudarthrobacter phenanthrenivorans 1 species Pseudarthrobacter chlorophenolicus 1 species 882 85085 0 1 genus Arthrobacter 15 11468 269 1663 0 1453 656366 0 species Arthrobacter alpinus 1 species 1 Arthrobacter crystallopoietes 895 0 37928 no rank 12 8851 0 235627 species 1 Arthrobacter sp. LS16 0 1690248 1025 678 1357915 0 1 Arthrobacter sp. QXT-31 species 0 1494608 743 species 1 Arthrobacter sp. PAMC 25486 761 0 290399 species Arthrobacter sp. FB24 1 species 1 Arthrobacter sp. YC-RL1 1025 0 1652545 2079227 0 625 Arthrobacter sp. PGP41 1 species 1771959 0 460 species 1 Arthrobacter sp. ATCC 21022 736 0 2020486 1 Arthrobacter sp. YN species species 1 Arthrobacter sp. U41 914 1849032 0 Arthrobacter sp. Rue61a 1 species 513 0 1118963 690 1806905 0 species Arthrobacter sp. ZXY-2 1 1704044 0 681 species Arthrobacter sp. ERGS1:01 1 1 Glutamicibacter 2 genus 1012 6 1742989 0 1006 256701 0 species 1 Glutamicibacter arilaitensis 1 genus 493 2078575 0 1 Arthrobacter sp. IHBB 11108 species 0 1618207 493 genus 1 607 0 1742992 43663 0 607 species Paenarthrobacter aurescens 1 1 2 Neomicrococcus genus 482 29 1868332 0 0 556325 453 Neomicrococcus aestuarii 1 species 2019 32 57493 0 1 4 Kocuria genus 1 Kocuria flava species 648 446860 0 species 1 Kocuria palustris 71999 0 631 species Kocuria rhizophila 1 72000 0 708 1304 4 32207 0 1 Rothia 3 genus 1 Rothia dentocariosa species 2047 0 456 species Rothia mucilaginosa 1 0 43675 844 577468 0 115 no rank 2 1 genus 2 Tropheryma 2038 0 115 1 0 2039 114 species Tropheryma whipplei 1 1 3 Dermatophilaceae family 85018 0 349 2 1 Dermatophilus 2 genus 347 4 1862 0 0 1863 343 1 Dermatophilus congolensis species 3 Beutenbergiaceae family 1 0 125316 2 832 Beutenbergia 2 genus 1 55 830 0 84756 84757 0 775 species Beutenbergia cavernae 1 1 family Cellulomonadaceae 6 85016 0 2697 11 genus 5 Cellulomonas 1 0 1707 55 2686 no rank 1 0 2620175 505 2003551 0 505 species 1 Cellulomonas sp. PSBB021 11 0 579 Cellulomonas gilvus 1 species species 1 Cellulomonas fimi 1708 0 719 0 1711 828 Cellulomonas flavigena 1 species 0 85017 50 3513 family 9 Promicromonosporaceae 1 17 1307 0 254250 Isoptericola 3 genus 1 0 139208 568 species Isoptericola variabilis 1 Isoptericola dokdonensis 1 species 722 0 372663 186188 0 879 8 1 Xylanimonas 2 genus Xylanimonas cellulosilytica 1 species 0 186189 871 1 Cellulosimicrobium 3 genus 157920 0 1277 17 678 1710 0 species Cellulosimicrobium cellulans 1 no rank 1 582 2624466 0 1 Cellulosimicrobium sp. TH-20 species 1980001 0 582 1 Microbacteriaceae 47 family 85023 0 20513 146 1 genus Rathayibacter 3 33886 0 687 1 species 1 Rathayibacter toxicus 244 0 145458 species 1 Rathayibacter tritici 442 0 33888 no rank 2 1655488 0 280 2 clade 1655489 0 280 280 529883 0 genus 2 Candidatus Rhodoluna planktonica 1 species 535712 0 84 species 1 Rhodoluna lacicola 196 529884 0 518733 0 711 5 1 2 Microterricola genus 706 412690 0 Microterricola viridarii 1 species Microcella 2 genus 1 2 405 0 337004 1 Microcella alkaliphila species 0 279828 403 1 genus Agromyces 2 33877 0 772 9 453304 0 763 species Agromyces aureus 1 202 0 1434032 genus 1 202 0 1159327 Pontimonas salivibrio 1 species genus Leifsonia 2 1 0 110932 24 1356 1575 0 1332 1 Leifsonia xyli species 1 Frondihabitans 2 genus 689 1 447237 0 no rank 1 2626248 0 688 688 1795630 0 1 Frondihabitans sp. PAMC 28766 species Clavibacter 6 genus 1 0 1573 123 2742 species Clavibacter michiganensis 5 1 453 2619 0 28447 0 33014 427 1 Clavibacter insidiosus subspecies subspecies 1 Clavibacter sepedonicus 577 31964 0 Clavibacter nebraskensis 1 subspecies 511 31963 0 Clavibacter capsici 1 subspecies 651 1874630 0 1 genus Curtobacterium 4 1915 51 2034 0 2 no rank 0 257496 1135 species Curtobacterium sp. BH-2-1-1 1 516 0 1905847 619 0 1561023 species Curtobacterium sp. MR_MD2014 1 0 69373 729 species 1 Curtobacterium pusillum 1 208 0 1705353 genus 2 Aurantimicrobium 1 207 708131 0 species Aurantimicrobium minutum 1 1 genus 14 Microbacterium 33882 0 7790 118 0 2033 447 species 1 Microbacterium testaceum Microbacterium chocolatum 1 species 0 84292 368 1 Microbacterium aurum species 36805 0 609 species Microbacterium hominis 1 782 0 162426 species 1 Microbacterium paludicola 0 300019 653 no rank 8 0 2609290 4813 1696072 0 475 species Microbacterium sp. CGR1 1 2103230 0 637 Microbacterium sp. str. 'China' 1 species 0 1916917 496 species 1 Microbacterium sp. 1.5R 1 Microbacterium sp. XT11 species 0 367477 585 647 1906742 0 species Microbacterium sp. BH-3-3-3 1 species Microbacterium sp. PAMC 28756 1 0 1795053 769 490 0 1938334 species Microbacterium sp. TPU 3598 1 1 Microbacterium sp. No. 7 species 0 1714373 714 634 1759331 0 genus 1 species 1 Cnuibacter physcomitrellae 0 1619308 634 1 Cryobacterium 3 genus 1976 17 69578 0 0 670052 989 1 Cryobacterium arcticum species 1 no rank 970 0 2649013 970 1978566 0 1 Cryobacterium sp. LW097 species 2 family 281 85022 0 genus Jonesia 2 1 5 281 0 43673 1 Jonesia denitrificans species 0 43674 276 5210 26 85020 0 1 family 11 Dermabacteraceae 0 36739 4 334 genus Dermabacter 2 1 Dermabacter vaginalis 1 species 330 1630135 0 1 genus Devriesea 2 351 3 472568 0 348 0 472569 1 Devriesea agamarum species 1 6 Brachybacterium genus 43668 0 4499 69 824 2017485 0 1 Brachybacterium sp. VR2415 species no rank 1 0 2623841 919 1 Brachybacterium sp. P6-10-X1 species 919 1903186 0 964 0 43669 1 Brachybacterium faecium species species Brachybacterium sp. VM2412 1 880 0 2017484 species Brachybacterium ginsengisoli 1 843 0 1331682 family Brevibacteriaceae 3 1 26 1241 0 85019 1215 30 1696 0 1 genus 2 Brevibacterium Brevibacterium linens 1 species 1185 1703 0 90991 660 85007 0 1 order Corynebacteriales 163 Gordoniaceae 9 family 1 0 85026 26 4114 1 genus Gordonia 8 4088 65 2053 0 Gordonia polyisoprenivorans 1 species 84595 0 529 778 2055 0 Gordonia terrae 1 species 1092 2657482 0 2 no rank 0 337191 564 species Gordonia sp. KTR9 1 Gordonia sp. YC-JH1 1 species 0 2059875 528 0 1136941 551 species 1 Gordonia phthalatica 1 Gordonia iterans species 0 1004901 555 1 Gordonia bronchialis species 2054 0 518 167 28605 0 1653 Corynebacteriaceae 52 family 1 1716 0 28438 612 1 Corynebacterium 51 genus species Corynebacterium diphtheriae 1 572 0 1717 species Corynebacterium marinum 1 0 349751 626 1 Corynebacterium lactis species 561 0 1231000 1121358 0 549 species Corynebacterium doosanense 1 0 1719 399 1 Corynebacterium pseudotuberculosis species 335 0 161879 1 Corynebacterium kroppenstedtii species 203263 0 559 Corynebacterium aquilae 1 species 571915 0 438 Corynebacterium mustelae 1 species species 1 Corynebacterium sphenisci 778 191493 0 species 1 Corynebacterium resistens 0 258224 405 461 169292 0 species Corynebacterium aurimucosum 1 633 1072256 0 species Corynebacterium uterequi 1 854 0 146827 species Corynebacterium simulans 1 1340 43770 0 1 Corynebacterium striatum species 187491 0 554 species 1 Corynebacterium glaucum species 1 Corynebacterium ulcerans 620 65058 0 649 0 156978 1 Corynebacterium imitans species species Corynebacterium maris 1 537 575200 0 0 1230998 782 species Corynebacterium frankenforstense 1 species Corynebacterium callunae 1 1721 0 526 species Corynebacterium flavescens 1 318 0 28028 1404244 0 573 species Corynebacterium glyciniphilum 1 Corynebacterium crudilactis 1 species 240 1652495 0 species Corynebacterium cystitidis 1 312 35757 0 Corynebacterium epidermidicanis 1 species 0 1050174 301 1 Corynebacterium testudinoris species 0 136857 446 401472 0 502 species Corynebacterium ureicelerivorans 1 419 0 1697 species 1 Corynebacterium ammoniagenes 1408191 0 513 species Corynebacterium deserti 1 434 191610 0 1 Corynebacterium atypicum species 413 161899 0 Corynebacterium singulare 1 species 685 0 1223514 species Corynebacterium humireducens 1 938 1718 0 species 1 Corynebacterium glutamicum Corynebacterium phocae 1 species 341 161895 0 Corynebacterium terpenotabidum 1 species 395 0 89154 species Corynebacterium kutscheri 1 35755 0 400 species Corynebacterium stationis 1 0 1705 404 Corynebacterium urealyticum 1 species 0 43771 520 2 no rank 842 0 2624378 384 0 1487956 1 Corynebacterium sp. ATCC 6931 species 458 702967 0 species Corynebacterium sp. NML98-0116 1 0 108486 591 species 1 Corynebacterium falsenii 1 Corynebacterium efficiens species 152794 0 745 1 Corynebacterium argentoratense species 42817 0 395 0 92706 377 1 [Brevibacterium] flavum species 1 Corynebacterium halotolerans species 0 225326 794 Corynebacterium variabile 1 species 0 1727 608 species Corynebacterium camporealensis 1 161896 0 479 402 160386 0 1 Corynebacterium casei species species Corynebacterium jeikeium 1 38289 0 1120 1141 38305 0 species Corynebacterium vitaeruminis 1 85025 0 22588 145 1 family 31 Nocardiaceae genus 7 Nocardia 1 117 8264 0 1817 135487 0 1664 species Nocardia cyriacigeorgica 1 0 37326 1957 species Nocardia brasiliensis 1 921 37330 0 Nocardia nova 1 species 1216 0 37332 1 Nocardia seriolae species Nocardia terpenica 1 species 455432 0 1216 0 37329 1173 species 1 Nocardia farcinica 1 Rhodococcus 23 genus 1827 0 14179 446 species 1 Rhodococcus aetherivorans 0 191292 755 829 0 1830 species Rhodococcus ruber 1 1 Rhodococcus erythropolis species 0 1833 774 1 Rhodococcus qingshengii species 0 334542 453 species 1 Rhodococcus hoagii 657 0 43767 Rhodococcus opacus 1 species 0 37919 1572 12 no rank 0 192944 6256 1 Rhodococcus sp. 2G species 398 0 1570939 0 1653478 539 species 1 Rhodococcus sp. PBTS 1 species Rhodococcus sp. p52 1 468 935199 0 0 1045808 467 species 1 Rhodococcus sp. YL-1 Rhodococcus sp. H-CA8f 1 species 592 0 1727214 1 Rhodococcus sp. 008 species 425 1723645 0 1564114 0 683 species Rhodococcus sp. B7740 1 312 0 679318 Rhodococcus sp. WMMA185 1 species species Rhodococcus sp. MTM3W5.2 1 583 1805827 0 788 0 1033922 species 1 Rhodococcus sp. WB1 433 1807790 0 species Rhodococcus sp. BH4 1 Rhodococcus sp. PBTS 2 1 species 1653479 0 568 461 1829 0 1 Rhodococcus rhodochrous species 496 0 103816 species Rhodococcus pyridinivorans 1 1 Rhodococcus jostii species 132919 0 853 627 0 1828 1 Rhodococcus fascians species 4 Tsukamurellaceae family 1 0 85028 7 1325 Tsukamurella 3 genus 1 0 2060 28 1318 57704 0 781 Tsukamurella tyrosinosolvens 1 species 509 2061 0 Tsukamurella paurometabola 1 species 0 1762 89 31854 Mycobacteriaceae 57 family 1 0 1763 1238 18257 34 Mycobacterium genus 1 574 1809 0 Mycobacterium ulcerans 1 species 705 0 1781 species 1 Mycobacterium marinum species group 4 77643 0 1118 species Mycobacterium tuberculosis 3 1 0 1773 290 811 1 Mycobacterium africanum biotype 256 33894 0 0 1765 265 biotype Mycobacterium bovis 1 species Mycobacterium canettii 1 0 78331 307 468 0 2249310 1 species group 468 722731 0 species Mycobacterium shigaense 1 596 0 1768 species Mycobacterium kansasii 1 Mycobacterium haemophilum 1 species 308 0 29311 8 species group 120793 0 3869 Mycobacterium paraintracellulare 1 species 1138383 0 147 1 species Mycobacterium intracellulare 4 1767 0 1314 322 subspecies Mycobacterium chimaera 1 222805 0 544 209 35617 0 subspecies Mycobacterium indicus pranii 1 239 0 1203599 1 Mycobacterium yongonense subspecies 1 Mycobacterium marseillense species 479 701042 0 species Mycobacterium colombiense 1 659 339268 0 1270 0 1764 species Mycobacterium avium 1 species 1 Mycobacterium liflandii 608 261524 0 species 1 Mycobacterium dioxanotrophicus 482462 0 723 13 no rank 2642494 0 7848 1 Mycobacterium sp. VKM Ac-1817D species 1273687 0 644 1570328 0 622 species Mycobacterium sp. NRRL B-3805 1 1545728 0 537 species 1 Mycobacterium sp. EPa45 species 1 Mycobacterium sp. PYR15 0 2051552 677 species 1 Mycobacterium sp. WY10 800 1920667 0 Mycobacterium sp. MCS 1 species 499 0 164756 1 Mycobacterium sp. KMS species 189918 0 507 1561223 0 352 Mycobacterium sp. QIA-37 1 species 1879023 0 1019 species 1 Mycobacterium sp. djl-10 species Mycobacterium sp. MOTT36Y 1 207 1168287 0 species 1 Mycobacterium sp. JLS 574 0 164757 Mycobacterium sp. JS623 1 species 584 0 212767 species Mycobacterium sp. YC-RL4 1 0 1682113 826 0 1769 202 1 Mycobacterium leprae species genus 2 1080 1073531 0 species Mycobacterium sinense 1 528 875328 0 species Mycobacterium terrae 1 0 1788 552 13 genus 0 1866885 9142 1 Mycobacterium vanbaalenii species 714 0 110539 693 134601 0 species 1 Mycobacterium goodii 750 1791 0 1 Mycobacterium aurum species Mycobacterium phlei 1 species 0 1771 759 868 0 1772 species 1 Mycobacterium smegmatis 1 Mycobacterium chubuense species 0 1800 671 679 1766 0 species 1 Mycobacterium fortuitum Mycobacterium vaccae 1 species 0 1810 752 0 1797 692 Mycobacterium thermoresistibile 1 species species Mycobacterium neoaurum 1 622 1795 0 36814 0 516 1 Mycobacterium rhodesiae species species 1 Mycobacterium litorale 758802 0 598 1804 0 828 species 1 Mycobacterium gilvum genus 5 0 670516 2920 1774 0 465 species Mycobacterium chelonae 1 450 0 1578165 species Mycobacterium saopaulense 1 1 Mycobacterium immunogenum species 579 83262 0 969 0 36809 Mycobacterium abscessus 1 species 457 0 1520670 1 Mycobacterium stephanolepidis species 0 697025 1 366 2 Hoyosella genus 1 species Hoyosella subflava 1 0 639313 365 85029 0 988 3 1 family 4 Dietziaceae 3 Dietzia genus 1 12 985 0 37914 0 499555 434 Dietzia timorensis 1 species 1 no rank 539 0 2617939 Dietzia sp. oral taxon 368 1 species 539 712270 0 1 family Segniliparaceae 3 316606 0 479 1 Segniliparus 2 genus 1 0 286801 3 478 Segniliparus rotundus 1 species 475 286802 0 2 no rank 697024 0 378 1 Lawsonella 2 genus 378 9 1847725 0 species 1 Lawsonella clevelandensis 0 1528099 369 85012 0 10280 77 1 Streptosporangiales 16 order 4515 40 2004 0 1 family 5 Streptosporangiaceae 1 Streptosporangium 2 genus 2000 0 1979 30 1949 0 2001 Streptosporangium roseum 1 species 1 2 Nonomuraea genus 83681 0 2496 30 2593643 0 2466 no rank 1 1909395 0 2466 Nonomuraea sp. ATCC 55076 1 species 53 4132 0 83676 family Nocardiopsaceae 7 1 0 83677 7 677 2 Thermobifida genus 1 species 1 Thermobifida fusca 670 2021 0 genus Nocardiopsis 4 1 0 2013 66 3402 1 Nocardiopsis gilva species 1112 0 280236 species Nocardiopsis alba 1 848 0 53437 1376 2014 0 Nocardiopsis dassonvillei 1 species 0 2012 5 1556 Thermomonosporaceae 3 family 1 26 1551 0 2019 genus 2 Thermomonospora 1 species Thermomonospora curvata 1 0 2020 1525 order 4 Kineosporiales 1 0 622452 2 1043 1041 11 83778 0 1 Kineosporiaceae 3 family 2 1030 0 33981 genus Kineococcus 2 1 1 Kineococcus radiotolerans species 0 131568 1028 85008 0 15697 10 1 Micromonosporales 20 order 15687 159 28056 0 1 Micromonosporaceae 19 family 1873 0 3788 63 1 4 Micromonospora genus 47850 0 1262 1 Micromonospora aurantiaca species 1438 2617518 0 no rank 1 1438 648999 0 1 Micromonospora sp. L5 species 0 1003110 1025 Verrucosispora maris 1 species 1 genus 4 Plantactinospora 673534 0 3642 91 3 no rank 3551 2631981 0 1256 2108470 0 species Plantactinospora sp. BC1 1 0 2071627 1108 species 1 Plantactinospora sp. BB1 species Plantactinospora sp. KBS50 1 0 2024580 1187 1 genus 3 Salinispora 1445 4 168694 0 species Salinispora tropica 1 168695 0 628 Salinispora arenicola 1 species 168697 0 813 0 1865 173 6650 genus 6 Actinoplanes 1 0 196914 1397 species 1 Actinoplanes friuliensis 3 no rank 3826 2626549 0 species Actinoplanes sp. N902-109 1 1475 649831 0 1177 0 134676 species Actinoplanes sp. SE50/110 1 0 2033844 1174 Actinoplanes sp. SE50 1 species Actinoplanes missouriensis 1 species 0 1866 1254 1 Verrucosispora genus 84593 0 3 1 671 0 622450 order Actinopolysporales 4 1 670 12 622451 0 1 family Actinopolysporaceae 3 1 genus 2 Actinopolyspora 1849 0 658 4 Actinopolyspora erythraea 1 species 0 414996 654 1 order Pseudonocardiales 40 85010 0 30879 70 0 2070 422 30809 Pseudonocardiaceae 39 family 1 65496 0 4368 77 1 genus 6 Actinoalloteichus species Actinoalloteichus sp. ADI127-7 1 1076 0 1612552 614 340345 0 species Actinoalloteichus hymeniacidonis 1 2644606 0 1764 2 no rank 0 2072503 705 species Actinoalloteichus sp. AHMU CJ021 1 1059 1612551 0 Actinoalloteichus sp. GBA129-24 1 species Actinoalloteichus hoggarensis 1 species 0 1470176 837 1230 0 2029 genus 1 Kibdelosporangium phytohabitans 1 species 860235 0 1230 505 1851 0 genus 1 species Saccharomonospora viridis 1 1852 0 505 Kutzneria 2 genus 1 0 43356 8 1777 species Kutzneria albida 1 43357 0 1769 1 8 Pseudonocardia genus 5951 125 1847 0 4872 2619320 0 no rank 6 1 Pseudonocardia sp. EC080625-04 species 0 1096868 756 species Pseudonocardia sp. EC080610-09 1 1688404 0 920 species Pseudonocardia sp. HH130630-07 1 0 1690815 689 species 1 Pseudonocardia sp. HH130629-09 756 1641402 0 species 1 Pseudonocardia sp. EC080619-01 908 1096856 0 Pseudonocardia sp. AL041005-10 1 species 843 445576 0 1 Pseudonocardia dioxanivorans species 954 240495 0 10 903 0 674734 genus 2 Alloactinosynnema 1 no rank 1 2636053 0 893 Alloactinosynnema sp. L-07 1 species 1653480 0 893 1 genus 3 Actinosynnema 3159 58 40566 0 species 1 Actinosynnema mirum 1502 40567 0 0 42197 1599 species Actinosynnema pretiosum 1 142577 0 742 3 1 genus 2 Prauserella species 1 Prauserella marina 739 0 530584 1520 5 2071 0 1 Saccharothrix 2 genus 103731 0 1515 Saccharothrix espanaensis 1 species genus 2 Lentzea 1 3 1298 0 165301 1 Lentzea guizhouensis species 1295 0 1586287 1 genus 2 Saccharopolyspora 1254 2 1835 0 species 1 Saccharopolyspora erythraea 1836 0 1252 1813 0 7680 108 1 genus 7 Amycolatopsis species 1 Amycolatopsis japonica 914 0 208439 1 Amycolatopsis methanolica species 1814 0 1038 0 31958 1943 species Amycolatopsis orientalis 1 1528 0 33910 species Amycolatopsis mediterranei 1 2 no rank 2149 0 2618356 Amycolatopsis sp. BJA-103 1 species 988 1911175 0 0 1896961 1161 Amycolatopsis sp. AA4 1 species 4 no rank 1752188 0 1005 Actinobacteria bacterium IMCC26077 1 species 196 1848755 0 218 0 1848754 1 Actinobacteria bacterium IMCC19121 species 1 Actinobacteria bacterium IMCC26103 species 271 0 1848756 320 1848255 0 Actinobacteria bacterium IMCC25003 1 species 4 class 1497346 0 1118 23 1118 0 588673 order 4 Solirubrobacterales 1 1095 11 320583 0 1 3 Conexibacteraceae family 191494 0 1084 28 1 genus 2 Conexibacter 1056 191495 0 species Conexibacter woesei 1 36 phylum 21744 0 1297 1 Deinococci 36 class 21744 135 188787 0 0 118964 131 13488 Deinococcales 15 order 1 183710 0 13357 40 1 14 Deinococcaceae family 13 Deinococcus genus 1 160 13317 0 1298 species 1 Deinococcus deserti 778 310783 0 Deinococcus swuensis 1 species 1605 1182571 0 0 1299 1197 1 Deinococcus radiodurans species no rank 1 2623546 0 924 0 2080419 924 1 Deinococcus sp. NW-56 species 1454 0 502394 species Deinococcus gobiensis 1 1220 0 1768108 species 1 Deinococcus actinosclerus species 1 Deinococcus maricopensis 309887 0 999 species 1 Deinococcus peraridilitoris 742 0 432329 species 1 Deinococcus soli Cha et al. 2016 0 1309411 1159 1355 55148 0 Deinococcus proteolyticus 1 species 68909 0 827 Deinococcus geothermalis 1 species Deinococcus puniceus 1 species 1182568 0 897 0 2762275 683 order 3 1 family Trueperaceae 3 332247 0 683 5 1 2 Truepera genus 332248 0 678 6 0 332249 672 Truepera radiovictrix 1 species 1 Thermales 17 order 7438 82 68933 0 16 Thermaceae family 1 0 188786 32 7356 17 1632 0 65551 3 Meiothermus genus 1 670 52022 0 species Meiothermus silvanus 1 species Meiothermus ruber 1 0 277 945 270 0 4168 89 1 8 Thermus genus species Thermus thermophilus 1 1215 0 274 species Thermus scotoductus 1 0 37636 447 559 56957 0 species Thermus oshimai 1 0 56956 375 1 Thermus brockianus species 1 no rank 491 2619321 0 491 0 1111069 1 Thermus sp. CCB_US3_UF1 species 0 456163 358 species 1 Thermus parvatiensis 0 271 634 species 1 Thermus aquaticus 208447 0 1087 14 1 Oceanithermus 2 genus 1073 0 187137 Oceanithermus profundus 1 species 0 186191 5 437 genus 2 Marinithermus 1 432 0 186192 species Marinithermus hydrothermalis 1 Tenericutes 102 phylum 1 1 60889 0 544448 55229 27 31969 0 1 class 97 Mollicutes 8553 8 186329 0 1 order 13 Acholeplasmatales family 12 Acholeplasmataceae 1 46 8545 0 2146 0 33926 4 2097 genus 6 Candidatus Phytoplasma 1 400 85630 0 1 species group 1 Candidatus Phytoplasma mali species 0 37692 400 0 85620 1184 3 species group 202462 0 348 1 Maize bushy stunt phytoplasma species species Aster yellows witches'-broom phytoplasma 1 348 0 229545 Onion yellows phytoplasma 1 species 0 100379 488 509 85632 0 1 species group 1 Candidatus Phytoplasma australiense species 0 59748 509 5 Acholeplasma genus 1 0 2147 59 6402 2194 38986 0 1 Acholeplasma palmae species 1 Acholeplasma brassicae species 926 61635 0 0 2148 1739 1 Acholeplasma laidlawii species 1 Acholeplasma oculi species 35623 0 1484 order 39 Entomoplasmatales 1 20 25057 0 186328 7670 16 33925 0 1 14 Entomoplasmataceae family 4991 170 46239 0 1 8 Mesoplasma genus species 1 Mesoplasma entomophilum 533 2149 0 species Mesoplasma syrphidae 1 0 225999 584 1083 0 2151 species Mesoplasma florum 1 411 219745 0 species 1 Mesoplasma tabanidae species 1 Mesoplasma coleopterae 0 324078 567 1 Mesoplasma chauliocola species 620 0 216427 1 Mesoplasma lactucae species 138853 0 1023 0 46238 29 2663 genus 5 Entomoplasma 1 834 0 215578 1 Entomoplasma somnilux species Entomoplasma melaleucae 1 species 995 81459 0 1 Entomoplasma freundtii species 0 74700 328 species 1 Entomoplasma luminosum 477 214888 0 family Spiroplasmataceae 24 1 0 2131 35 17367 genus Spiroplasma 23 1 0 2132 340 17332 1 Spiroplasma citri species 1181 0 2133 47834 0 1126 species 1 Spiroplasma kunkelii species 1 Spiroplasma taiwanense 890 2145 0 1114980 0 557 1 Spiroplasma atrichopogonis species species Spiroplasma diminutum 1 1167 216936 0 0 2139 782 species Spiroplasma clarkii 1 1278 0 2637901 2 no rank 1 Spiroplasma sp. TU-14 species 0 1898044 639 1 Spiroplasma sp. NBRC 100390 species 1914410 0 639 494 0 216933 species Spiroplasma chrysopicola 1 216944 0 542 species Spiroplasma sabaudiense 1 1 Spiroplasma helicoides species 727 0 216938 species Spiroplasma syrphidicola 1 485 0 216945 1 Spiroplasma mirum species 0 2144 547 934 0 216946 Spiroplasma turonicum 1 species 1 Spiroplasma culicicola species 1045 216935 0 707 216934 0 species Spiroplasma corruscae 1 Spiroplasma litorale 1 species 855 216942 0 1 Spiroplasma floricola species 867 0 216937 1 Spiroplasma monobiae species 2136 0 831 Spiroplasma eriocheiris 1 species 756 315358 0 Spiroplasma apis 1 species 0 2137 415 806 0 362837 Spiroplasma cantharicola 1 species 1 order 44 Mycoplasmatales 2085 0 21592 14 43 Mycoplasmataceae family 1 54 21578 0 2092 3 Ureaplasma genus 1 0 2129 8 1086 0 2130 532 Ureaplasma urealyticum 1 species species 1 Ureaplasma parvum 546 134821 0 6965 2767358 0 genus 12 species Mycoplasma pullorum 1 444 48003 0 2107 0 510 species 1 Mycoplasma pulmonis 301 0 2113 1 Mycoplasma californicum species 0 2109 373 species Mycoplasma synoviae 1 1030 28903 0 species 1 Mycoplasma bovis Mycoplasma canis 1 species 507 0 29555 1 Mycoplasma cynos species 171284 0 764 640 0 2110 species Mycoplasma agalactiae 1 species Mycoplasma bovigenitalium 1 2112 0 441 495 0 29553 species 1 Mycoplasma bovirhinis species 1 Mycoplasma arginini 679 0 2094 781 0 2115 1 Mycoplasma fermentans species 1 genus Mycoplasma 27 2093 0 13473 180 species Mycoplasma hyorhinis 1 2100 0 672 0 50052 702 Mycoplasma crocodyli 1 species 171632 0 113 species 1 Mycoplasma ovis 327 0 45362 species Mycoplasma bovoculi 1 species Mycoplasma parvum 1 221 984991 0 species 1 Mycoplasma mobile 603 0 2118 1 Mycoplasma wenyonii species 80 65123 0 223 2128 0 species 1 Mycoplasma flocculare 2098 0 1269 species Mycoplasma hominis 1 Mycoplasma haemofelis 1 species 121 0 29501 428 2096 0 species Mycoplasma gallisepticum 1 1 Mycoplasma dispar species 0 86660 288 1 Mycoplasma arthritidis species 2111 0 357 species 1 Mycoplasma hyopneumoniae 307 2099 0 species Mycoplasma yeatsii 1 884 0 51365 610 2123 0 species 1 Mycoplasma putrefaciens 0 28227 834 1 Mycoplasma penetrans species 495 0 2683645 no rank 1 1 Mycoplasma sp. (ex Biomphalaria glabrata) species 0 1749074 495 Mycoplasma genitalium 1 species 194 0 2097 species 1 Mycoplasma pneumoniae 147 0 2104 0 656088 3781 3 species group 2105 0 912 species 1 Mycoplasma leachii 1712 2102 0 species Mycoplasma mycoides 1 1 Mycoplasma capricolum species 2095 0 1157 species Mycoplasma suis 1 0 57372 178 1 Mycoplasma haemocanis species 91 136241 0 1 Mycoplasma canadense species 29554 0 368 2 no rank 2799557 0 1845 Candidatus Izimaplasma 2 genus 1 5 1845 0 1912503 no rank 1 1840 2624196 0 0 1541959 1840 1 Candidatus Izimaplasma sp. HR1 species 0 713063 3814 no rank 2 1911684 0 1920 Tenericutes bacterium MO-XQ 1 species species Tenericutes bacterium MZ-XQ 1 1911683 0 1894 750 67819 0 5 phylum class Fimbriimonadia 5 1 0 1663419 1 750 1663425 0 749 9 1 order Fimbriimonadales 4 family Fimbriimonadaceae 3 1 5 740 0 1663426 1 genus Fimbriimonas 2 1005038 0 735 2 species Fimbriimonas ginsengisoli 1 733 0 1005039 53131 1798711 0 clade 152 phylum 152 Cyanobacteria 1 0 1117 12 53131 order 7 Pleurocapsales 1 0 52604 10 1845 1890498 0 1423 7 1 family 4 Dermocarpellaceae 3 1416 0 102115 3 Stanieria genus 1 679 0 2642663 no rank 1 0 1807358 679 1 Stanieria sp. NIES-3757 species 1 Stanieria cyanosphaera species 102116 0 734 0 1890500 1 412 family 2 Hyellaceae 1 411 44474 0 genus 1 411 54308 0 species Pleurocapsa minor 1 13330 0 1301283 46 subclass 26 Chroococcales order 1 17 8642 0 1118 family Aphanothecaceae 10 1 1 3869 0 1890450 463 0 92682 2 no rank genus Halothece 2 1 4 463 0 76023 no rank 1 0 2632878 459 65093 0 459 species Halothece sp. PCC 7418 1 genus 1 702 263510 0 1 species 702 2546360 0 1 Cyanothece sp. ATCC 51142 strain 0 43989 702 0 1453359 1 491 genus 2 Candidatus Atelocyanobacterium 1 species Candidatus Atelocyanobacterium thalassa 1 490 713887 0 836 0 2546365 genus 2 species 2 836 0 2546366 355 0 395962 Cyanothece sp. PCC 8802 1 strain 0 41431 481 1 Cyanothece sp. PCC 8801 strain genus 2 28070 0 1376 species 1 2546359 0 717 717 0 497965 Cyanothece sp. PCC 7822 1 strain 659 0 2546356 species 1 strain Cyanothece sp. PCC 7424 1 659 0 65393 1 8 Chroococcaceae family 2747 4 1890464 0 102231 0 405 1 1 genus 2 Gloeocapsa 1 no rank 0 2623012 404 1 Gloeocapsa sp. PCC 7428 species 404 0 1173026 1 genus Geminocystis 3 669357 0 1633 6 1627 2625037 0 no rank 2 907 1615909 0 Geminocystis sp. NIES-3708 1 species species 1 Geminocystis sp. NIES-3709 1617448 0 720 1 Chondrocystis 2 genus 705 6 268175 0 699 0 2648896 1 no rank 699 0 2005460 species Chondrocystis sp. NIES-4102 1 1 Cyanobacteriaceae 3 family 1890452 0 721 1 Cyanobacterium 2 genus 1 1 720 0 102234 species 1 Cyanobacterium aponinum 379064 0 719 0 1890449 7 1288 family Microcystaceae 4 1 1 3 Microcystis genus 1125 0 1281 3 0 2643300 366 1 no rank 1967666 0 366 Microcystis sp. MC19 1 species 912 1126 0 species Microcystis aeruginosa 1 0 1150 27 4688 order Oscillatoriales 20 1 family 6 Oscillatoriaceae 1 19 1683 0 1892254 genus Oscillatoria 3 1 3 1126 0 1158 118323 0 419 species 1 Oscillatoria acuminata 704 482564 0 Oscillatoria nigro-viridis 1 species 1 538 0 1155738 genus 2 Moorea 1 0 1155739 537 species 1 Moorea producens 2 Gomontiellaceae family 1 10 530 0 1892255 genus 1 0 241421 520 species Crinalium epipsammum 1 520 0 241425 1892251 0 782 4 1 Coleofasciculaceae 3 family 63132 0 778 1 1 genus 2 Geitlerinema no rank 1 777 2648775 0 0 1173025 777 species Geitlerinema sp. PCC 7407 1 485 17 1892249 0 1 3 Cyanothecaceae family 1 genus Cyanothece 2 43988 0 468 13 0 2649277 455 no rank 1 Cyanothece sp. PCC 7425 1 species 455 395961 0 1 Microcoleaceae 5 family 1181 3 1892252 0 0 1205 1 793 genus Trichodesmium 2 1 species 1 Trichodesmium erythraeum 1206 0 792 385 2 44471 0 1 Microcoleus 2 genus 383 2642155 0 1 no rank species 1 Microcoleus sp. PCC 7113 0 1173027 383 0 1983111 444 1 no rank 444 0 718217 species 1 cyanobacterium endosymbiont of Epithemia turgida 0 1161 21 13885 33 Nostocales order 1 1185 0 985 1 1 family 3 Rivulariaceae 373984 0 984 5 1 2 Rivularia genus 979 0 2676603 1 no rank species Rivularia sp. PCC 7116 1 373994 0 979 4019 0 2661849 8 family 1 Calothrix 8 genus 1186 0 4019 19 0 32054 559 species 1 Calothrix parietina no rank 6 0 2619626 3441 species Calothrix sp. NIES-2098 1 0 1954171 567 Calothrix sp. NIES-4101 1 species 0 2005461 686 424 2005462 0 species 1 Calothrix sp. NIES-3974 463 1337936 0 1 Calothrix sp. 336/3 species 99598 0 313 Calothrix sp. PCC 7507 1 species 988 2005469 0 species 1 Calothrix sp. NIES-4071 1219117 0 632 no rank 1 species Nostocales cyanobacterium HT-58-2 1 1940762 0 632 1 family Nostocaceae 17 7801 21 1162 0 3 Trichormus genus 1 2 973 0 264688 264691 0 499 species Trichormus variabilis 1 species Trichormus azollae 1 472 0 1164 24 5072 0 1177 genus 10 Nostoc 1 1306274 0 596 Nostoc flagelliforme 1 species species Nostoc punctiforme 1 272131 0 487 no rank 7 3965 2593658 0 543 103690 0 species 1 Nostoc sp. PCC 7120 641 1869241 0 1 Nostoc sp. CENA543 species species 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 0 504 676 1751286 0 1 Nostoc sp. NIES-3756 species species 1 Nostoc sp. PCC 7107 525 317936 0 species 1 Nostoc sp. PCC 7524 28072 0 596 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1618022 480 0 1163 1735 3 genus 575 0 1165 1 Anabaena cylindrica species 1160 0 2619674 no rank 2 564 1647413 0 1 Anabaena sp. WA102 species 596 0 46234 1 Anabaena sp. 90 species 1892263 0 427 1 1 3 Hapalosiphonaceae family 1 genus 2 Fischerella 426 1 1190 0 425 0 494603 1 no rank 425 1752063 0 1 Fischerella sp. NIES-3754 species 1890505 0 474 2 order 0 1890528 474 2 family 0 54298 1 474 Chroococcidiopsis 2 genus 1 Chroococcidiopsis thermalis 1 species 54299 0 473 1 order 56 Synechococcales 21265 153 1890424 0 1890436 0 413 1 1 family 3 Pseudanabaenaceae genus 2 Pseudanabaena 1 0 1152 3 412 409 2593292 0 no rank 1 Pseudanabaena sp. PCC 7367 1 species 82654 0 409 family 1 1890429 0 369 155977 0 369 1 genus 1 Acaryochloris marina species 0 155978 369 0 1890428 9 855 5 Merismopediaceae family 1 846 21 1142 0 1 Synechocystis 4 genus 0 2640012 825 3 no rank 0 2116702 229 Synechocystis sp. IPPAS B-1465 1 species 1 Synechocystis sp. PCC 6714 species 367 0 1147 1 Synechocystis sp. PCC 6803 species 0 1148 229 family Synechococcaceae 33 1 0 1890426 49 12517 2166 20 167375 0 1 Cyanobium 3 genus 1234 2627006 0 no rank 1 species 1 Cyanobium sp. NIES-981 1851505 0 1234 0 59930 912 1 Cyanobium gracile species genus Synechococcus 26 1 0 1129 148 9582 266 32046 0 Synechococcus elongatus 1 species 33070 0 308 Synechococcus lividus 1 species no rank 23 8860 0 2626047 321332 0 433 1 Synechococcus sp. JA-2-3B'a(2-13) species 0 374982 288 Synechococcus sp. PCC 73109 1 species 276 0 374981 Synechococcus sp. PCC 7003 1 species 168 316279 0 species Synechococcus sp. CC9902 1 species 1 Synechococcus sp. PCC 8807 195248 0 361 895 321327 0 species 1 Synechococcus sp. JA-3-3Ab 0 316278 539 species 1 Synechococcus sp. RCC307 1 Synechococcus sp. WH 8109 species 311 166314 0 408 0 32051 1 Synechococcus sp. WH 7803 species 311 1350461 0 species 1 Synechococcus sp. UTEX 2973 335 1173263 0 1 Synechococcus sp. PCC 7502 species species Synechococcus sp. KORDI-52 1 411 585425 0 110662 0 336 Synechococcus sp. CC9605 1 species 531 0 1916956 Synechococcus sp. SynAce01 1 species species Synechococcus sp. NIES-970 1 365 1827144 0 350 0 195498 Synechococcus sp. PCC 7117 1 species Synechococcus sp. CC9311 1 species 184 64471 0 84588 0 455 1 Synechococcus sp. WH 8102 species species 1 Synechococcus sp. WH 8103 447 0 29410 0 1280380 483 Synechococcus sp. KORDI-100 1 species 0 32049 340 species 1 Synechococcus sp. PCC 7002 0 585423 353 species 1 Synechococcus sp. KORDI-49 1 Synechococcus sp. PCC 6312 species 195253 0 280 genus 1 285 146785 0 0 146786 285 1 Thermosynechococcus elongatus species 435 5 13034 0 1 2 Dactylococcopsis genus 430 0 292566 1 Dactylococcopsis salina species 0 1890438 13 2194 6 Leptolyngbyaceae family 1 0 47251 6 2181 Leptolyngbya 5 genus 1 0 2650499 1794 3 no rank 111781 0 414 Leptolyngbya sp. PCC 7376 1 species 1 Leptolyngbya sp. NIES-3755 species 382 0 1752064 0 1080068 998 species 1 Leptolyngbya sp. O-77 381 1184 0 species 1 Leptolyngbya boryana 0 2303730 415 2 family 1 genus Halomicronema 2 170610 0 415 6 1 Halomicronema hongdechloris species 409 1209493 0 4349 3 1213 0 1 5 Prochloraceae family 4 Prochlorococcus genus 1 4 4346 0 1218 1127 2627481 0 no rank 2 species 1 Prochlorococcus sp. MIT 0604 0 1501268 729 species 1 Prochlorococcus sp. MIT 0801 0 1501269 398 3215 0 1219 species 1 Prochlorococcus marinus 0 307596 12 1876 Gloeobacteria 6 class 1 1 Gloeobacterales 5 order 1864 23 307595 0 1890422 0 1841 51 1 family 4 Gloeobacteraceae 1 genus Gloeobacter 3 1790 12 33071 0 1040 0 33072 species Gloeobacter violaceus 1 738 1416614 0 species 1 Gloeobacter kilaueensis 5627 508458 0 10 phylum class 10 Synergistia 1 0 649775 8 5627 649776 0 5619 42 1 9 Synergistales order 0 649777 38 5577 8 Synergistaceae family 1 genus 1 349 0 81466 species 1 Aminobacterium colombiense 349 0 81468 0 81461 3 483 Thermanaerovibrio 2 genus 1 480 0 81462 species Thermanaerovibrio acidaminovorans 1 genus 1 0 49894 256 Acetomicrobium mobile 1 species 0 97477 256 1 genus 0 336260 343 336261 0 343 species Thermovirga lienii 1 genus 2 Cloacibacillus 1 6 4108 0 508459 1 Cloacibacillus porcorum species 0 1197717 4102 57 phylum 44961 0 203691 203692 0 44961 98 1 class Spirochaetia 57 6 order 8618 1643686 0 0 143786 38 8618 Brachyspiraceae 6 family 1 1 genus 5 Brachyspira 29521 0 8580 98 84378 0 1460 1 Brachyspira murdochii species 159 0 2001 1 Brachyspira hyodysenteriae species species 1 Brachyspira intermedia 1824 0 84377 3197 0 52584 species Brachyspira pilosicoli 1 0 1643688 3787 order 8 family Leptospiraceae 8 1 0 170 3 3787 0 171 14 3205 Leptospira 6 genus 1 1167 0 173 1 Leptospira interrogans species Leptospira biflexa 1 species 400 0 172 596 174 0 1 Leptospira borgpetersenii species species 1 Leptospira santarosai 28183 0 398 630 28452 0 species 1 Leptospira alstonii genus 1 0 338321 579 29510 0 579 Turneriella parva 1 species 1 42 Spirochaetales order 32458 796 136 0 1643685 0 5538 1 1 17 Borreliaceae family 1 genus Borreliella 8 64895 0 2695 87 species 1 Borreliella burgdorferi 319 139 0 390 0 1674146 species Borrelia mayonii 1 291 0 62088 species Borreliella valaisiana 1 0 29518 351 Borreliella afzelii 1 species 0 29519 614 species Borreliella garinii 1 species 1 Borreliella bavariensis 0 664662 418 225 64897 0 species Borreliella bissettii 1 genus Borrelia 8 1 40 2842 0 138 Borrelia duttonii 1 species 424 40834 0 species 1 Borrelia miyamotoi 651 0 47466 species 1 Borrelia turicatae 328 0 142 Borrelia anserina 1 species 143 0 287 140 0 339 1 Borrelia hermsii species species 1 Borrelia parkeri 448 0 141 species Borrelia recurrentis 1 44449 0 325 0 137 103 26124 24 Spirochaetaceae family 1 1 868 0 1616789 genus Salinispira 2 1 species Salinispira pacifica 1 0 1307761 867 2220 10 146 0 1 Spirochaeta 3 genus 1 Spirochaeta africana species 0 46355 973 1 Spirochaeta thermophila species 154 0 1237 2 Sediminispirochaeta genus 1 0 1911556 4 1212 1208 0 55206 species 1 Sediminispirochaeta smaragdinae 129 18864 0 157 Treponema 12 genus 1 species Treponema pallidum 1 160 0 154 Treponema azotonutricium 1 species 0 150829 1151 1582 0 158 Treponema denticola 1 species 81028 0 1818 species 1 Treponema brennaborense 1 Treponema putidum species 2948 221027 0 species 1 Treponema pedis 673 409322 0 2638727 0 2576 no rank 1 0 1539298 2576 1 Treponema sp. OMZ 838 species 1210 88058 0 Treponema primitia 1 species species Treponema succinifaciens 1 167 0 5622 215591 0 842 1 Treponema caldarium species 159 0 53435 species Treponema paraluiscuniculi 1 1 genus 4 Sphaerochaeta 399320 0 2857 7 872 0 1131707 Sphaerochaeta pleomorpha 1 species 778 273376 0 species Sphaerochaeta coccoides 1 0 1131703 1200 Sphaerochaeta globosa 1 species Proteobacteria 2012 phylum 1 0 1224 474 1277876 3671 0 1553900 10 class 5 order 2024979 0 1324 family Bacteriovoracaceae 3 1 1 649 0 263369 1 genus Bacteriovorax 2 146784 0 648 1 Bacteriovorax stolpii 1 species 960 0 647 675 0 1652132 family 2 2 Halobacteriovorax genus 1 5 675 0 1652133 species Halobacteriovorax marinus 1 670 97084 0 1 5 Bdellovibrionales order 213481 0 2347 18 4 Bdellovibrionaceae family 1 0 213483 9 2329 958 0 2320 15 1 Bdellovibrio 3 genus Bdellovibrio exovorus 1 species 453816 0 351 species Bdellovibrio bacteriovorus 1 1954 0 959 460 256576 0 28216 class 351 Betaproteobacteria 1 22001 211 206351 0 1 Neisseriales 36 order 0 1499392 118 9489 13 Chromobacteriaceae family 1 genus Laribacter 2 1 0 168470 13 1261 0 168471 1248 species Laribacter hongkongensis 1 genus 2 Aquaspirillum 1 0 187 6 986 0 2620219 980 no rank 1 980 0 1938604 species 1 Aquaspirillum sp. LM1 885864 0 948 12 1 Jeongeupia 2 genus no rank 1 0 2619593 936 species Jeongeupia sp. USM3 1 936 1906741 0 568394 0 1301 12 1 genus 2 Pseudogulbenkiania 1 no rank 2642558 0 1289 1289 0 748280 species 1 Pseudogulbenkiania sp. NH8B 0 90153 4875 no rank 4 genus Chromobacterium 4 1 71 4875 0 535 no rank 1 1377 0 2641838 2059672 0 1377 species Chromobacterium sp. ATCC 53434 1 Chromobacterium vaccinii 1 species 0 1108595 1920 species Chromobacterium violaceum 1 536 0 1507 1 family Neisseriaceae 22 481 0 12301 134 2 Simonsiella genus 1 0 71 3 392 species 1 Simonsiella muelleri 0 72 389 0 59 20 948 Vitreoscilla 3 genus 1 1 no rank 0 2627922 235 Vitreoscilla sp. C1 1 species 0 96942 235 693 63 0 1 Vitreoscilla filiformis species 1 12 Neisseria genus 9137 181 482 0 2623750 0 1648 2 no rank 1128 655307 0 Neisseria sp. KEM232 1 species species 1 Neisseria sp. 10022 520 1853276 0 664 0 490 Neisseria sicca 1 species 485 0 604 Neisseria gonorrhoeae 1 species species Neisseria weaveri 1 28091 0 588 species Neisseria lactamica 1 938 0 486 species 1 Neisseria sp. 10023 617 1853278 0 1 Neisseria zoodegmatis species 615 0 326523 1 Neisseria elongata species 495 0 673 Neisseria mucosa 1 species 679 488 0 species Neisseria meningitidis 1 0 487 1930 Eikenella 2 genus 1 4 647 0 538 539 0 643 Eikenella corrodens 1 species no rank 1 0 421605 405 1 Neisseriaceae bacterium DSM 100970 species 0 2052837 405 genus 1 1193515 0 638 Snodgrassella alvi 1 species 1196083 0 638 80840 0 205562 2056 1 order Burkholderiales 235 1 84 Burkholderiaceae family 119060 0 78960 495 1827195 0 802 1 genus 802 758793 0 1 Burkholderia sp. RPE64 species 204 8858 0 48736 Ralstonia 5 genus 1 species 1 Ralstonia mannitolilytica 1364 105219 0 305 0 3906 species Ralstonia solanacearum 1 species 1 Ralstonia insidiosa 1245 0 190721 2139 0 329 1 Ralstonia pickettii species 9 Cupriavidus genus 1 0 106589 294 11334 68895 0 1373 1 Cupriavidus basilensis species 1171 0 248026 Cupriavidus pinatubonensis 1 species 119219 0 1079 species Cupriavidus metallidurans 1 species 1 Cupriavidus sp. USMAA1020 1478 367825 0 968 82541 0 species Cupriavidus gilardii 1 2 no rank 0 2640874 2884 species Cupriavidus sp. USMAHM13 1 1435 0 1389192 0 876364 1449 species Cupriavidus sp. USMAA2-4 1 1 Cupriavidus necator species 2087 0 106590 39488 1936 32008 0 1 Burkholderia 41 genus 19430 87882 0 19 species group Burkholderia multivorans 1 species 1411 87883 0 Burkholderia stabilis 1 species 949 95485 0 1 Burkholderia seminalis species 548 0 488731 2919 0 95486 species 1 Burkholderia cenocepacia 0 1503055 396 species Burkholderia territorii 1 910 0 60552 1 Burkholderia vietnamiensis species Burkholderia lata 1 species 482957 0 1007 species 1 Burkholderia cepacia 292 0 3366 488729 0 515 species 1 Burkholderia metallica 852 0 152480 species 1 Burkholderia ambifaria 0 1207504 597 Burkholderia pseudomultivorans 1 species species 1 Burkholderia stagnalis 0 1503054 594 species 1 Burkholderia ubonensis 2167 0 101571 species 1 Burkholderia latens 488446 0 596 species 1 Burkholderia diffusa 488732 0 465 [Pseudomonas] mesoacidophila 1 species 265293 0 605 0 488447 643 species 1 Burkholderia contaminans 1 Burkholderia pyrrocinia species 60550 0 375 515 0 152500 species 1 Burkholderia dolosa Burkholderia gladioli 1 species 1710 0 28095 species 1 Burkholderia plantarii 1097 0 41899 111527 0 5927 7 species group 1 Burkholderia thailandensis species 1310 57975 0 1637831 0 510 species 1 Burkholderia sp. MSMB617WGS 0 28450 1711 Burkholderia pseudomallei 1 species Burkholderia oklahomensis 1 species 0 342113 897 1 Burkholderia sp. MSMB0266 species 1637837 0 499 species 1 Burkholderia sp. MSMB0852 1637841 0 522 478 13373 0 species 1 Burkholderia mallei no rank 11 2613784 0 7496 1795874 0 490 species Burkholderia sp. PAMC 28687 1 species Burkholderia sp. HB1 1 1678678 0 792 species 1 Burkholderia sp. YI23 874 0 1097668 965 0 758796 1 Burkholderia sp. RPE67 species 416344 0 534 species 1 Burkholderia sp. KJ006 1795043 0 495 species 1 Burkholderia sp. PAMC 26561 787 1740163 0 species 1 Burkholderia sp. Bp7605 species Burkholderia sp. CCGE1001 1 770 640510 0 species 1 Burkholderia sp. CCGE1003 640512 0 671 Burkholderia sp. Bp5365 1 species 540 0 1740162 species 1 Burkholderia sp. 2002721687 578 0 1468409 1892 337 0 species Burkholderia glumae 1 0 44013 2 671 Polynucleobacter 4 genus 1 155 576610 0 1 Polynucleobacter necessarius species 274 576611 0 1 Polynucleobacter asymbioticus species species Polynucleobacter duraquae 1 240 1835254 0 Paraburkholderia 12 genus 1 0 1822464 202 10366 689 252970 0 species Paraburkholderia phenoliruptrix 1 0 134537 849 species 1 Paraburkholderia fungorum 1398 75105 0 Paraburkholderia caribensis 1 species 937 0 261302 1 Paraburkholderia phytofirmans species 2615204 0 663 no rank 1 species 1 Paraburkholderia sp. SOS3 663 1926494 0 1 Paraburkholderia phymatum species 148447 0 932 948107 0 859 species 1 Paraburkholderia sprentiae 1 Paraburkholderia aromaticivorans species 0 2026199 952 species 1 Paraburkholderia xenovorans 36873 0 1013 Paraburkholderia terrae 1 species 895 311230 0 977 0 169430 Paraburkholderia hospita 1 species 6685 131 93217 0 1 Pandoraea 10 genus species Pandoraea apista 1 819 0 93218 species Pandoraea faecigallinarum 1 0 656179 708 species 1 Pandoraea pnomenusa 853 93220 0 Pandoraea vervacti 1 species 0 656178 766 species Pandoraea thiooxydans 1 724 445709 0 650 0 93221 species 1 Pandoraea pulmonicola 1 Pandoraea norimbergensis species 716 93219 0 754 0 573737 species 1 Pandoraea oxalativorans 0 93222 564 species Pandoraea sputorum 1 261 0 2571159 genus 1 Paraburkholderia rhizoxinica 1 species 412963 0 261 187 23812 0 75682 29 Oxalobacteraceae family 1 1 genus Oxalobacter 2 778 3 846 0 species Oxalobacter formigenes 1 775 847 0 0 303379 11 902 genus Herminiimonas 3 1 species Herminiimonas arsenitoxidans 1 370 1809410 0 521 204773 0 Herminiimonas arsenicoxydans 1 species genus Janthinobacterium 7 1 67 5629 0 29580 species 1 Janthinobacterium svalbardensis 368607 0 1107 species 1 Janthinobacterium agaricidamnosum 55508 0 806 4 no rank 3649 2610881 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1 species 1302 0 1644131 553 1236179 0 1 Janthinobacterium sp. B9-8 species species 1 Janthinobacterium sp. LM6 1938606 0 1221 573 0 375286 1 Janthinobacterium sp. Marseille species 202907 0 3943 112 1 genus Collimonas 4 1431 279058 0 species 1 Collimonas arenae species 1 Collimonas fungivorans 1137 158899 0 0 279113 1263 species Collimonas pratensis 1 1 Massilia 6 genus 6684 123 149698 0 species Massilia putida 1 1207 1141883 0 2690 2609279 0 no rank 2 1363 0 1678028 species 1 Massilia sp. NR 4-1 1707785 0 1327 species Massilia sp. WG5 1 0 2045208 1109 1 Massilia sp. B2 species 1 Massilia sp. ZMN-3 species 2072590 0 1555 963 0 5689 173 1 6 Herbaspirillum genus species 1 Herbaspirillum rubrisubalbicans 80842 0 1092 1450 92645 0 species Herbaspirillum frisingense 1 1 Herbaspirillum seropedicae species 964 0 1391 species Herbaspirillum hiltneri 1 0 341045 765 0 2624150 818 1 no rank 0 2025949 818 species Herbaspirillum sp. meg3 1 11692 0 224471 17 no rank genus Leptothrix 2 1 33 1178 0 88 0 34029 1145 species Leptothrix cholodnii 1 1487 31 93681 0 1 2 Roseateles genus 76731 0 1456 species 1 Roseateles depolymerans Rubrivivax 2 genus 1 0 28067 42 1519 1477 28068 0 species 1 Rubrivivax gelatinosus 1 2 Rhizobacter genus 1375 36 212743 0 species 1 Rhizobacter gummiphilus 946333 0 1339 316612 0 1131 36 1 genus 2 Methylibium 1095 105560 0 species Methylibium petroleiphilum 1 65047 0 1390 66 1 genus 2 Mitsuaria 1324 2648776 0 1 no rank 1658665 0 1324 species 1 Mitsuaria sp. 7 1066 413882 0 1 [Polyangium] brachysporum species 48 1483 0 32012 2 Thiomonas genus 1 926 0 1435 1 Thiomonas intermedia species 0 318147 29 1063 2 Paucibacter genus 1 0 2642959 1034 no rank 1 Paucibacter sp. KCTC 42545 1 species 1034 1768242 0 1473 0 80841 2 no rank 883 1834205 0 species Burkholderiales bacterium YL45 1 Burkholderiales bacterium GJ-E10 1 species 1469502 0 590 683 48953 0 80864 family Comamonadaceae 58 1 1 genus 4 Comamonas 4315 54 283 0 Comamonas testosteroni 1 species 2039 285 0 species Comamonas serinivorans 1 1082851 0 1180 225992 0 1042 Comamonas kerstersii 1 species 1 9 Acidovorax genus 12916 0 8780 481 80869 0 1106 Acidovorax citrulli 1 species 910 0 553814 species 1 Acidovorax sp. NA3 species Acidovorax avenae 1 0 80867 1042 4293 2684926 0 4 no rank Acidovorax sp. KKS102 1 species 1175 0 358220 0 1842533 1020 1 Acidovorax sp. RAC01 species species Acidovorax sp. JS42 1 1047 232721 0 species 1 Acidovorax sp. T1 1051 0 1858609 species Acidovorax ebreus 1 0 721785 948 genus 2 Simplicispira 1 0 352450 10 685 2109915 0 675 1 Simplicispira sp. SC1-8 species 501 1436289 0 genus 1 0 1436290 501 species 1 Candidatus Symbiobacter mobilis 2050 18 52972 0 1 3 Polaromonas genus Polaromonas naphthalenivorans 1 species 216465 0 994 2638319 0 1038 1 no rank 1038 0 296591 species 1 Polaromonas sp. JS666 2490452 0 1473 genus 2 667 0 1458425 1 Comamonadaceae bacterium A1 species 1458426 0 806 1 Comamonadaceae bacterium B1 species genus 1 1119 2678886 0 2116657 0 1119 species 1 Melaminivora sp. SC2-7 47420 0 3033 37 1 genus 4 Hydrogenophaga 672 0 1763535 Hydrogenophaga crassostreae 1 species 2 no rank 2610897 0 2324 0 1842537 1068 Hydrogenophaga sp. RAC07 1 species 795665 0 1256 Hydrogenophaga sp. PBC 1 species 1 Variovorax 5 genus 34072 0 6567 131 1 Variovorax boronicumulans species 436515 0 1226 no rank 2 2108 0 663243 0 2126319 1503 species Variovorax sp. PMC12 1 605 1795631 0 species Variovorax sp. PAMC 28711 1 Variovorax paradoxus 1 species 3102 0 34073 genus Verminephrobacter 2 1 7 876 0 364316 0 364317 869 1 Verminephrobacter eiseniae species genus Rhodoferax 5 1 27 3253 0 28065 651 192843 0 1 Rhodoferax ferrireducens species 1034 0 1842727 Rhodoferax koreense 1 species species Rhodoferax saidenbachensis 1 746 0 1484693 795 81479 0 species 1 Rhodoferax antarcticus genus 2 Diaphorobacter 1 0 238749 15 1310 0 1546149 1295 1 Diaphorobacter polyhydroxybutyrativorans species Ottowia 3 genus 1 0 219181 21 2319 1064 0 2645081 no rank 1 0 1658672 1064 species 1 Ottowia sp. oral taxon 894 species Ottowia sp. KADR8-3 1 1234 0 2109914 1 Ramlibacter 2 genus 174951 0 2309 9 1 Ramlibacter tataouinensis species 94132 0 2300 1200 14 1649468 0 1 2 Melaminivora genus 1186 2641902 0 1 no rank 0 2109913 1186 species Melaminivora sp. SC2-9 1 genus Limnohabitans 3 1 10 814 0 665874 0 2626134 804 no rank 2 1 Limnohabitans sp. 63ED37-2 species 0 1678128 472 0 1678129 332 Limnohabitans sp. 103DPR2 1 species 8 1736 0 201096 genus 2 Alicycliphilus 1 179636 0 1728 species Alicycliphilus denitrificans 1 5 Delftia genus 1 165 5930 0 80865 species 1 Delftia tsuruhatensis 0 180282 1415 0 80866 1400 Delftia acidovorans 1 species 2950 0 2613839 no rank 2 species 1 Delftia sp. Cs1-4 0 742013 1585 1 Delftia sp. HK171 species 1365 0 1920191 506 0 38616 287 1 Alcaligenaceae 44 family Basilea 2 genus 1 1 384 0 1472344 383 0 1472345 species Basilea psittacipulmonis 1 Orrella 2 genus 1 0 1921582 26 1289 1 Orrella dioscoreae species 1263 0 1851544 222 0 13119 421 1 Achromobacter 6 genus species Achromobacter spanius 1 217203 0 2363 2767 32002 0 Achromobacter denitrificans 1 species species 1 Achromobacter insolitus 1162 0 217204 1358 2626865 0 no rank 1 species Achromobacter sp. AONIH1 1 1758194 0 1358 5048 0 85698 species 1 Achromobacter xylosoxidans 14 343 0 90243 genus Oligella 2 1 0 90245 329 species 1 Oligella urethralis 1 genus Bordetella 17 517 0 17374 528 913 0 1416803 Bordetella genomosp. 9 1 species 1 Bordetella parapertussis species 1145 0 519 518 0 2138 Bordetella bronchiseptica 1 species 1416806 0 1142 species 1 Bordetella genomosp. 8 species 1 Bordetella bronchialis 463025 0 1105 0 463014 1156 species Bordetella flabilis 1 2630031 0 1090 1 no rank Bordetella sp. H567 1 species 1090 1697043 0 species Bordetella petrii 1 0 94624 893 species 1 Bordetella trematum 1007 123899 0 856 0 520 Bordetella pertussis 1 species species 1 Bordetella hinzii 0 103855 1240 0 1331258 979 species 1 Bordetella pseudohinzii species 1 Bordetella avium 532 0 521 1 Bordetella genomosp. 6 species 0 463024 1125 1034 0 463040 species Bordetella genomosp. 13 1 35814 0 491 Bordetella holmesii 1 species 0 305976 5 562 genus 2 Pusillimonas 1 557 0 2640016 1 no rank species Pusillimonas sp. T7-7 1 1007105 0 557 genus 3 Taylorella 1 0 29574 4 705 322 0 29575 species 1 Taylorella equigenitalis species 1 Taylorella asinigenitalis 0 84590 379 Castellaniella 2 genus 1 63 1225 0 359336 species Castellaniella defragrans 1 1162 75697 0 257 2 1100891 0 1 genus 2 Paenalcaligenes Paenalcaligenes hominis 1 species 643674 0 255 1626 23 507 0 1 2 Alcaligenes genus 1 Alcaligenes faecalis species 0 511 1603 Advenella 3 genus 1 0 290425 22 1445 Advenella mimigardefordensis 1 species 792 302406 0 631 310575 0 species Advenella kashmirensis 1 119066 0 2846 11 no rank 1 genus 100 1301080 0 1 Candidatus Nasuia deltocephalinicola species 100 1160784 0 11 0 189384 genus 1 species Candidatus Tremblaya princeps 1 0 189385 11 genus 6 Kinetoplastibacterium 1 0 33055 11 1670 species 1 Candidatus Kinetoplastibacterium galatii 994695 0 387 1 Candidatus Kinetoplastibacterium crithidii species 300 33056 0 204 994696 0 species Candidatus Kinetoplastibacterium oncopeltii 1 Candidatus Kinetoplastibacterium desouzaii 1 species 465 0 994692 303 233181 0 species 1 Kinetoplastibacterium blastocrithidii 1381133 0 176 genus 1 Candidatus Profftella armatura 1 species 669502 0 176 889 25 327159 0 1 Candidatus Accumulibacter 2 genus 864 0 327160 species 1 Candidatus Accumulibacter phosphatis 32003 0 11673 62 1 Nitrosomonadales 44 order 0 90627 64 1384 Gallionellaceae 5 family 1 96 0 507 2 1 Gallionella 2 genus species Gallionella capsiferriformans 1 505 0 370405 813 15 314343 0 1 Sideroxydans 2 genus 0 63745 798 species 1 Sideroxydans lithotrophicus 1 12 Nitrosomonadaceae family 206379 0 3599 29 35798 0 1275 2 1 genus 4 Nitrosospira 1288494 0 274 1 Nitrosospira lacus species 530 0 35799 species Nitrosospira briensis 1 0 1231 469 species Nitrosospira multiformis 1 6 2295 0 914 genus 7 Nitrosomonas 1 44574 0 337 species 1 Nitrosomonas communis 907 0 2609265 2 no rank 470 0 153948 1 Nitrosomonas sp. AL212 species 437 261292 0 1 Nitrosomonas sp. Is79A3 species 426 0 915 species 1 Nitrosomonas europaea species Nitrosomonas eutropha 1 916 0 271 1 Nitrosomonas ureae species 44577 0 348 0 2008793 32 1657 Sterolibacteriaceae 5 family 1 1 Methyloversatilis 2 genus 770 14 378210 0 1 no rank 756 2639971 0 species Methyloversatilis sp. RAC08 1 756 0 1842540 0 1054211 17 855 Sulfuritalea 2 genus 1 1 Sulfuritalea hydrogenivorans species 748811 0 838 1 family 14 Methylophilaceae 3021 20 32011 0 404 0 337 8 1 genus Methylobacillus 2 species Methylobacillus flagellatus 1 0 405 329 genus Methylovorus 3 1 0 81682 14 1078 species 1 Methylovorus glucosotrophus 522 0 266009 1 no rank 542 0 2634027 Methylovorus sp. MP688 1 species 542 887061 0 2 Methylophilus genus 1 0 16 1 410 409 2630143 0 no rank 1 species 1 Methylophilus sp. TWE2 0 1662285 409 0 359407 3 617 genus Methylotenera 3 1 359408 0 293 species Methylotenera mobilis 1 1055487 0 321 1 Methylotenera versatilis species 2 559 0 1679002 genus 3 Candidatus Methylopumilus 1 1 Candidatus Methylopumilus turicensis species 1581680 0 270 287 0 1581557 1 Candidatus Methylopumilus planktonicus species 2 557 0 2008790 family Thiobacillaceae 3 1 2 Thiobacillus genus 1 8 555 0 919 species 1 Thiobacillus denitrificans 0 36861 547 family 4 1393 0 2772226 1 genus 2 Sulfuriferula 1778653 0 861 3 858 0 2637784 1 no rank 858 0 1985873 Sulfuriferula sp. AH1 1 species genus Sulfuricella 2 1 10 532 0 935200 Sulfuricella denitrificans 1 species 522 0 649841 951 33809 0 2 no rank 0 1904640 730 1 Betaproteobacteria bacterium GR16-43 species 221 0 543913 beta proteobacterium CB 1 species order 22 Rhodocyclales 1 176 13083 0 206389 1 12 Zoogloeaceae family 9131 210 2008794 0 1 genus Azoarcus 5 3869 170 12960 0 2099 2629479 0 no rank 2 1109 198107 0 species Azoarcus sp. CIB 1 species Azoarcus sp. KH32C 1 990 748247 0 780 2067960 0 Azoarcus sp. SY39 1 species 0 418699 820 species Azoarcus olearius 1 5052 90 33057 0 1 genus 6 Thauera 0 2609274 2340 2 no rank 85643 0 1238 Thauera sp. MZ1T 1 species Thauera sp. K11 1 species 0 2005884 1102 Thauera chlorobenzoica 1 species 745 96773 0 species 1 Thauera aromatica 920 59405 0 Thauera humireducens 1 species 957 0 1134435 Azonexaceae 3 family 1 3 730 0 2008795 1 genus 2 Dechloromonas 727 6 73029 0 1 Dechloromonas aromatica species 721 259537 0 family Rhodocyclaceae 6 1 51 3046 0 75787 Aromatoleum 2 genus 1 0 551759 22 764 551760 0 742 Aromatoleum aromaticum 1 species 1533 29 146937 0 1 Azospira 2 genus 1 Azospira oryzae species 1504 0 146939 0 75788 698 1 no rank 698 1898103 0 species 1 Rhodocyclaceae bacterium 1198 2 580370 0 1 class Zetaproteobacteria 6 5 Mariprofundales order 1 27 1196 0 580371 13 1169 0 580372 family 4 Mariprofundaceae 1 1 Mariprofundus 3 genus 377315 0 1156 14 species 1 Mariprofundus aestuarium 561 1921086 0 species Mariprofundus ferrinatatus 1 581 0 1921087 28211 0 309168 1041 1 Alphaproteobacteria 557 class order 2 566 0 2800059 566 0 2800061 2 family 0 74317 5 566 2 Maricaulis genus 1 0 74318 561 species Maricaulis maris 1 1 88 Rhodobacterales order 204455 0 52425 306 862 52119 0 31989 Rhodobacteraceae 87 family 1 2 Defluviimonas genus 1 4 999 0 1097466 0 1335048 995 species Defluviimonas alba 1 2 genus 2244 0 263377 1233 0 1229727 species 1 Thiobacimonas profunda 1 no rank 1011 2640570 0 1792508 0 1011 species 1 Yangia sp. CCB-MM3 0 478070 40 2543 Labrenzia 4 genus 1 no rank 2 2648686 0 1634 1 Labrenzia sp. CP4 species 1674922 0 932 702 2021862 0 1 Labrenzia sp. VG12 species 1 Labrenzia aggregata species 187304 0 869 genus Roseibacterium 2 1 0 159345 3 544 Roseibacterium elongatum 1 species 0 159346 541 1 genus Octadecabacter 4 1201 1 53945 0 1 Octadecabacter temperatus species 0 1458307 438 Octadecabacter arcticus 1 species 53946 0 407 species Octadecabacter antarcticus 1 355 1217908 0 genus 1 0 119541 540 species 1 Rhodobaca barguzinensis 540 0 441209 1 genus 2 Jannaschia 772 14 188905 0 2645469 0 758 1 no rank species Jannaschia sp. CCS1 1 0 290400 758 genus Leisingera 2 1 3 1011 0 191028 1 Leisingera methylohalidivorans species 1008 0 133924 60136 0 1636 4 1 Sulfitobacter 3 genus no rank 1 796 0 196795 1 Sulfitobacter sp. AM1-D1 species 796 1917485 0 1 Sulfitobacter pseudonitzschiae species 1402135 0 836 0 227873 18 1742 genus Pannonibacter 2 1 0 121719 1724 species Pannonibacter phragmitetus 1 480 1759396 0 1 genus 0 2622455 480 1 no rank 480 0 1920883 Marivivens sp. JLT3646 1 species 5 Celeribacter genus 1 11 2645 0 875170 1 Celeribacter manganoxidans species 0 1411902 754 0 1397108 351 1 Celeribacter marinus species 739 1208324 0 Celeribacter indicus 1 species Celeribacter ethanolicus 1 species 1758178 0 790 0 367771 5 1019 Marinovum 2 genus 1 Marinovum algicola 1 species 1014 42444 0 0 74032 1 813 genus Antarctobacter 2 1 812 74033 0 1 Antarctobacter heliothermus species 2 no rank 1149 58840 0 1904441 0 448 species 1 Rhodobacteraceae bacterium 701 2033435 0 Rhodobacteraceae bacterium QY30 1 species 399 1284657 0 genus 1 399 0 1284658 species 1 Planktomarina temperata 1 3 Roseobacter genus 1086 5 2433 0 510 2434 0 species 1 Roseobacter denitrificans Roseobacter litoralis 1 species 0 42443 571 436 4 1579315 0 1 Halocynthiibacter 2 genus Halocynthiibacter arcticus 1 species 1579316 0 432 0 92944 7 1274 Ketogulonicigenium 3 genus 1 611 0 92947 species 1 Ketogulonicigenium robustum 656 0 92945 1 Ketogulonicigenium vulgare species genus Rhodovulum 4 1 34 2729 0 34008 35806 0 1372 species 1 Rhodovulum sulfidophilum no rank 2 0 2631432 1323 Rhodovulum sp. P5 1 species 0 1564506 574 1 Rhodovulum sp. MB263 species 308754 0 749 1 genus Thioclava 2 285107 0 754 1 species 1 Thioclava nitratireducens 0 1915078 753 0 265 129 7677 Paracoccus 9 genus 1 no rank 1 246570 0 730 730 1529068 0 species 1 Paracoccus sp. BM15 0 1945662 786 species Paracoccus contaminans 1 147645 0 1360 Paracoccus yeei 1 species 0 34003 720 species 1 Paracoccus aminophilus species 1 Paracoccus aminovorans 927 0 34004 882 0 2065379 species Paracoccus sp. CBA4604 1 1237 0 266 species Paracoccus denitrificans 1 Paracoccus zhejiangensis 1 species 1077935 0 906 genus 1 0 299261 553 553 299262 0 species Tateyamaria omphalii 1 2 Sagittula genus 1 0 58842 2 1423 0 2624628 1421 no rank 1 species 1 Sagittula sp. P11 1421 2009329 0 Pelagibaca 2 genus 1 16 1120 0 360528 1104 1250539 0 1 Pelagibaca abyssi species 745 1 309512 0 1 genus Dinoroseobacter 2 744 215813 0 1 Dinoroseobacter shibae species 730 1649279 0 genus 1 0 379347 730 species Ruegeria mobilis 1 genus Phaeobacter 5 1 0 302485 55 5063 species Phaeobacter inhibens 1 1779 221822 0 1 Phaeobacter gallaeciensis species 60890 0 1375 species 1 Phaeobacter piscinae 0 1580596 1431 1844006 0 423 species 1 Phaeobacter porticola 8 1391 0 97050 Ruegeria 3 genus 1 1 no rank 0 2625375 476 292414 0 476 1 Ruegeria sp. TM1040 species 907 89184 0 1 Ruegeria pomeroyi species 3 540 0 74030 genus Roseovarius 2 1 Roseovarius mucosus 1 species 537 0 215743 1609958 0 883 10 1 genus Confluentimicrobium 2 no rank 1 2643318 0 873 species Confluentimicrobium sp. EMB200-NS6 1 0 1609966 873 0 1060 44 4518 Rhodobacter 5 genus 1 196779 0 1422 no rank 2 827 2033869 0 species 1 Rhodobacter sp. CZR27 species Rhodobacter sp. LPB0142 1 1850250 0 595 Rhodobacter capsulatus 1 species 1021 1061 0 1063 0 2031 Rhodobacter sphaeroides 1 species 1 genus 598 0 2211641 Loktanella vestfoldensis 1 species 598 245188 0 82 Sphingomonadales order 1 0 204457 314 45274 35556 410 41297 0 1 family 59 Sphingomonadaceae 1 genus 2709685 0 558 0 266812 558 species 1 Sphingorhabdus flavimaris 1 genus Sphingorhabdus 3 1317 61 1434046 0 no rank 2 1256 2614947 0 species 1 Sphingorhabdus sp. YGSMI21 592 0 2077182 664 1806885 0 species 1 Sphingorhabdus sp. M41 165697 0 5928 131 1 10 Sphingopyxis genus 117207 0 528 Sphingopyxis alaskensis 1 species 447 33052 0 Sphingopyxis terrae 1 species 1212 0 33050 1 Sphingopyxis macrogoltabida species 0 2614943 2164 4 no rank 603 1866325 0 species 1 Sphingopyxis sp. MG species 1 Sphingopyxis sp. QXT-31 1357916 0 652 species 1 Sphingopyxis sp. LPB0140 0 1913578 412 497 292913 0 1 Sphingopyxis sp. 113P3 species 1515612 0 656 species 1 Sphingopyxis fribergensis 790 267128 0 species Sphingopyxis granuli 1 41 864 0 150203 genus 2 Blastomonas 1 0 2626550 823 1 no rank 823 1842535 0 species Blastomonas sp. RAC04 1 10065 176 13687 0 1 15 Sphingomonas genus 4004 196159 0 no rank 6 species 1 Sphingomonas sp. LK11 1390395 0 805 species 1 Sphingomonas sp. Cra20 580 0 1327635 1 Sphingomonas sp. NIC1 species 0 1961362 743 species 1 Sphingomonas sp. LM7 556 0 1938607 species Sphingomonas sp. KC8 1 565 1030157 0 species Sphingomonas sp. MM-1 1 755 0 745310 571 0 1560345 Sphingomonas panacis 1 species 0 1549858 775 species Sphingomonas taxi 1 1 Sphingomonas sanxanigenens species 914 397260 0 species Sphingomonas koreensis 1 0 93064 658 1 Sphingomonas melonis species 152682 0 618 701 1609977 0 Sphingomonas hengshuiensis 1 species 714 1648 0 160791 Sphingomonas wittichii 2 species 1 934 0 1283312 1 Sphingomonas sp. DC-6 strain 72173 0 727 14 1 genus Citromicrobium 2 1 no rank 713 2630544 0 713 0 1634516 species Citromicrobium sp. JL477 1 2685927 0 591 1 genus species 1 Sphingomonas sp. JJ-A5 591 0 1921510 165696 0 3237 54 1 genus Novosphingobium 5 species 1 Novosphingobium resinovorum 0 158500 973 2644732 0 831 1 no rank species Novosphingobium sp. PP1Y 1 0 702113 831 665 48935 0 1 Novosphingobium aromaticivorans species 0 205844 714 species 1 Novosphingobium pentaromativorans 215 9906 0 165695 15 Sphingobium genus 1 no rank 6 3810 0 2611147 species Sphingobium sp. YBL2 1 0 484429 851 species Sphingobium sp. TKS 1 719 0 1315974 1 Sphingobium sp. RAC03 species 0 1843368 674 1 Sphingobium sp. MI1205 species 454 0 407020 403 1855519 0 1 Sphingobium sp. EP60837 species 709 0 627192 Sphingobium sp. SYK-6 1 species 332055 0 853 1 Sphingobium indicum species species 1 Sphingobium herbicidovorans 0 76947 532 886 0 1673076 species 1 Sphingobium hydrophobicum species 1 Sphingobium japonicum 0 332056 742 496 1332080 0 1 Sphingobium baderi species 606 120107 0 1 Sphingobium cloacae species 1 Sphingobium yanoikuyae species 903 13690 0 863 0 46429 species Sphingobium chlorophenolicum 1 1 2 Zymomonas genus 541 0 1273 6 0 542 1267 Zymomonas mobilis 1 species genus 2 Rhizorhabdus 1 0 1649486 18 680 species 1 Rhizorhabdus dicambivorans 1850238 0 662 1 family Erythrobacteraceae 22 9404 162 335929 0 95 1417 0 361177 genus Altererythrobacter 4 1 1 Altererythrobacter atlanticus species 570 0 1267766 species Altererythrobacter ishigakiensis 1 0 476157 297 361183 0 455 species 1 Altererythrobacter epoxidivorans genus 1 0 2800685 462 543877 0 462 Altererythrobacter marensis 1 species 2 genus 0 2800681 959 species 1 Erythrobacter gangjinensis 515 0 502682 444 1648404 0 species 1 Erythrobacter atlanticus 0 1855416 934 2 genus 0 192812 546 species Erythrobacter flavus 1 0 266951 388 species 1 Erythrobacter seohaensis 0 2800682 581 genus 1 645517 0 581 1 Altererythrobacter namhicola species 1 genus Croceicoccus 3 1265 92 1295327 0 1348774 0 428 species Croceicoccus naphthovorans 1 745 450378 0 species 1 Croceicoccus marinus no rank 6 2821 0 2800788 0 1041 152 1504 3 Erythrobacter genus 1 Erythrobacter litoralis 1 species 877 0 39960 Porphyrobacter neustonensis 1 species 0 1112 475 3 Porphyrobacter genus 1 0 1111 98 1317 no rank 2 1219 0 2683265 2023229 0 645 Porphyrobacter HT-58-2 1 species species Porphyrobacter sp. LM 6 1 574 1896196 0 2 genus 803 2800686 0 0 1982042 329 1 Altererythrobacter mangrovi species species Altererythrobacter dongtanensis 1 474 0 692370 204458 0 13391 80 1 order Caulobacterales 20 13311 197 76892 0 1 Caulobacteraceae 19 family no rank 1 372 0 81440 0 1759059 372 species 1 Caulobacteraceae bacterium OTSz_A_272 20 0 956 8 1 Phenylobacterium 2 genus Phenylobacterium zucineum 1 species 948 284016 0 12 917 0 76890 2 Asticcacaulis genus 1 905 78587 0 species 1 Asticcacaulis excentricus 0 41275 93 4371 7 Brevundimonas genus 1 Brevundimonas vesicularis 1 species 41276 0 645 699 74313 0 species Brevundimonas subvibrioides 1 Brevundimonas naejangsanensis 1 species 0 588932 758 0 2622653 2176 no rank 3 1 Brevundimonas sp. GW460-12-10-14-LB2 species 1827469 0 596 862 0 1938605 1 Brevundimonas sp. LM2 species 1532555 0 718 Brevundimonas sp. DS20 1 species 75 0 6498 74 1 6 Caulobacter genus 0 2648921 1465 1 no rank 1 Caulobacter sp. K31 species 1465 0 366602 species Caulobacter henricii 1 69395 0 758 1 Caulobacter vibrioides species 0 155892 2055 species 1 Caulobacter segnis 88688 0 1080 species 1 Caulobacter mirabilis 0 69666 1066 0 1921002 1 794 order Holosporales 6 1 family Caedimonadaceae 2 1 0 2100208 11 220 genus 1 209 1509243 0 Candidatus Nucleicultrix amoebiphila 1 species 1509244 0 209 1 family 44746 0 320 0 204454 320 1 no rank 0 86106 320 species 1 endosymbiont of Acanthamoeba sp. UWC8 253 0 1777752 2 family 253 4 1521255 0 1 genus Candidatus Paracaedibacter 2 species 1 Candidatus Paracaedibacter acanthamoebae 0 91604 249 Rhizobiales 209 order 1 1199 132302 0 356 Beijerinckiaceae 5 family 1 0 45404 9 1049 1 Beijerinckia 2 genus 532 0 520 1 0 533 519 species 1 Beijerinckia indica 520 13 120652 0 1 Methylocella 2 genus 1 Methylocella silvestris species 0 199596 507 0 118882 50 6377 20 Brucellaceae family 1 2966 1068 234 0 1 genus Brucella 14 130 120577 0 Brucella ceti 1 species species Brucella suis 1 106 0 29461 Brucella microti 1 species 444163 0 86 92 0 29459 species Brucella melitensis 1 1 Brucella pinnipedialis species 123 120576 0 1 Brucella abortus species 82 235 0 0 981386 238 species Brucella vulpis 1 0 236 62 species Brucella ovis 1 species Brucella canis 1 0 36855 114 2632610 0 865 no rank 4 1 Brucella sp. 141012304 species 0 1885919 388 species 1 Brucella sp. 09RB8471 0 1149952 188 225 1844051 0 1 Brucella sp. 09RB8910 species 1 Brucella sp. 2002734562 species 64 1891098 0 genus 5 Ochrobactrum 1 0 528 29 3361 1 Ochrobactrum pseudogrignonense species 1009 0 419475 Ochrobactrum pituitosum 1 species 868 0 571256 0 529 725 species Ochrobactrum anthropi 1 1 Ochrobactrum sp. A44 species 730 0 271865 69277 0 12805 139 1 Phyllobacteriaceae 20 family 3 686 0 274591 Hoeflea 2 genus 1 no rank 1 2614931 0 683 species 1 Hoeflea sp. IMCC20628 1620421 0 683 1 genus 2 Phyllobacterium 28100 0 765 10 1 Phyllobacterium zundukense species 1867719 0 755 genus 2 Aminobacter 1 15 1114 0 31988 83263 0 1099 species 1 Aminobacter aminovorans 1 genus 2 Chelativorans 449972 0 1206 5 0 2643807 1201 1 no rank 1201 266779 0 Chelativorans sp. BNC1 1 species 245876 0 677 17 1 genus 2 Nitratireductor 660 472175 0 species 1 Nitratireductor basaltis genus Mesorhizobium 9 1 258 8218 0 68287 no rank 1 893 325217 0 Mesorhizobium sp. WSM1497 1 species 0 278153 893 850 0 71433 species 1 Mesorhizobium amorphae Mesorhizobium loti 1 species 1169 381 0 2066070 0 1115 species 1 Mesorhizobium japonicum 1 Mesorhizobium opportunistum species 593909 0 953 893 536018 0 species Mesorhizobium australicum 1 Mesorhizobium ciceri 1 species 0 39645 1360 727 0 1670800 species 1 Mesorhizobium sp. B7 no rank 6 2081 119042 0 1 Hartmannibacter 2 genus 931 17 1572860 0 914 1482074 0 1 Hartmannibacter diazotrophicus species 2 Pseudorhodoplanes genus 1 10 633 0 1734920 623 0 1235591 species 1 Pseudorhodoplanes sinuspersici 517 6 1484898 0 1 genus 2 Methyloceanibacter 511 1384459 0 1 Methyloceanibacter caenitepidi species 83 8539 0 45401 19 Hyphomicrobiaceae family 1 1068 0 547 9 1 Rhodomicrobium 2 genus species 1 Rhodomicrobium vannielii 538 1069 0 genus 2 Blastochloris 1 0 59282 16 864 Blastochloris viridis 1 species 848 1079 0 0 81 25 2573 genus Hyphomicrobium 4 1 species 1 Hyphomicrobium denitrificans 810 53399 0 2619925 0 828 1 no rank Hyphomicrobium sp. MC1 1 species 0 717785 828 910 0 1427356 1 Hyphomicrobium nitrativorans species 1082930 0 598 7 1 Pelagibacterium 2 genus species Pelagibacterium halotolerans 1 531813 0 591 Rhodoplanes 2 genus 1 42 991 0 29407 1 no rank 2619116 0 949 Rhodoplanes sp. Z2-YC6860 1 species 949 0 674703 0 119044 1 311 Filomicrobium 2 genus 1 0 1608628 310 Candidatus Filomicrobium marinum 1 species 46913 0 2572 56 1 4 Devosia genus 2516 0 196773 3 no rank 2083786 0 590 species 1 Devosia sp. I507 species 1 Devosia sp. A16 0 1736675 1096 Devosia sp. H5989 1 species 1643450 0 830 family 52 Rhizobiaceae 1 404 45412 0 82115 Shinella 2 genus 1 0 323620 7 1442 0 2643062 1435 1 no rank 1435 0 879274 species 1 Shinella sp. HZN7 10 no rank 10029 0 227292 8384 145 28105 0 1 genus Sinorhizobium 7 849 110321 0 Sinorhizobium medicae 1 species 2120 382 0 species Sinorhizobium meliloti 1 1963 2613772 0 no rank 2 1 Sinorhizobium sp. CCBAU 05631 species 805 0 794846 Sinorhizobium sp. RAC02 1 species 1842534 0 1158 species Sinorhizobium americanum 1 194963 0 1150 2157 0 663276 1 species group species 1 Sinorhizobium fredii 2157 380 0 11 1645 0 106591 genus Ensifer 3 1 0 716925 691 species 1 Ensifer sojae 943 106592 0 species Ensifer adhaerens 1 32354 227290 0 33 no rank 1525371 0 1633 19 1 2 Neorhizobium genus Neorhizobium galegae 1 species 399 0 1614 24 Rhizobium genus 1 1325 22963 0 379 0 56730 1429 species Rhizobium gallicum 1 2613769 0 9403 no rank 18 867 1703969 0 Rhizobium sp. N324 1 species 911 0 2028343 species Rhizobium sp. 10195 1 1 Rhizobium sp. N1314 species 102 1703961 0 3 1703964 0 Rhizobium sp. N621 1 species 0 1703967 1 1 Rhizobium sp. N741 species 1 Rhizobium sp. CIAT894 species 590 2020312 0 1869170 0 784 species 1 Rhizobium sp. S41 1 Rhizobium sp. N6212 species 0 1703965 3 species Rhizobium sp. IE4771 1 557 0 1301032 species 1 Rhizobium sp. N731 0 1703966 102 773 0 2020311 Rhizobium sp. Kim5 1 species 0 424182 724 species 1 Rhizobium sp. IRBG74 852 2048897 0 species 1 Rhizobium sp. NXC24 1 Rhizobium sp. NXC14 species 540 1981173 0 species Rhizobium sp. Y9 1 790 1914541 0 1571470 0 1060 species 1 Rhizobium sp. ACO-34A 1 Rhizobium sp. NT-26 species 599 0 1125847 1 Rhizobium sp. TAL182 species 145 2020313 0 384 0 5478 1 Rhizobium leguminosarum species 0 396 1700 species Rhizobium phaseoli 1 species Rhizobium tropici 1 398 0 920 2708 29449 0 Rhizobium etli 1 species 0 357 130 7758 7 Agrobacterium genus 1 0 359 949 species Agrobacterium rhizogenes 1 899 373 0 species 1 Agrobacterium vitis species group 2 1183400 0 4413 3436 358 0 species Agrobacterium tumefaciens 1 species 1 Agrobacterium fabrum 0 1176649 977 1367 0 2632611 2 no rank Agrobacterium sp. RAC06 1 species 1842536 0 605 861208 0 762 1 Agrobacterium sp. H13-3 species 34019 0 1183 6 1 genus Liberibacter 6 species 1 Candidatus Liberibacter americanus 309868 0 209 116 0 34021 species 1 Candidatus Liberibacter asiaticus 317 0 556287 Candidatus Liberibacter solanacearum 1 species 1 Liberibacter crescens species 321 1273132 0 Candidatus Liberibacter africanus 1 species 214 34020 0 1 15 Methylobacteriaceae family 13906 69 119045 0 genus 3 0 2282523 4776 species 1 Methylobacterium zatmanii 0 29429 685 species 1 Methylobacterium populi 1690 223967 0 2401 408 0 species 1 Methylobacterium extorquens 1 Microvirga 2 genus 186650 0 1083 7 1 Microvirga ossetica species 1882682 0 1076 9 Methylobacterium genus 1 0 407 379 7978 1025 0 31998 species Methylobacterium radiotolerans 1 species Methylobacterium aquaticum 1 1165 270351 0 species 1 Methylobacterium phyllosphaerae 0 418223 802 875 334852 0 Methylobacterium oryzae 1 species 2727 0 2615210 3 no rank species 1 Methylobacterium sp. AMS5 925818 0 742 983 426117 0 1 Methylobacterium sp. 4-46 species 1002 1479019 0 species 1 Methylobacterium sp. C1 Methylobacterium nodulans 1 species 0 114616 1005 1767 16 2036754 0 1 4 Chelatococcaceae family 28209 0 1751 78 1 genus Chelatococcus 3 0 444444 615 species 1 Chelatococcus daeguensis 0 2638111 1058 no rank 1 1702325 0 1058 1 Chelatococcus sp. CO-6 species 1 7 Xanthobacteraceae family 3830 30 335928 0 37 1246 0 279 genus Xanthobacter 2 1 1209 0 280 Xanthobacter autotrophicus 1 species 29 1477 0 6 genus 2 Azorhizobium 1 species Azorhizobium caulinodans 1 7 0 1448 1 genus Starkeya 2 152053 0 1077 15 1062 921 0 1 Starkeya novella species family Rhodobiaceae 3 1 0 119043 3 452 449 12 256616 0 1 genus 2 Parvibaculum 0 256618 437 Parvibaculum lavamentivorans 1 species 311 23371 0 41294 family 26 Bradyrhizobiaceae 1 genus Rhodopseudomonas 2 1 0 1073 56 5383 5327 0 1076 1 Rhodopseudomonas palustris species 0 40136 3 597 2 Oligotropha genus 1 0 40137 594 Oligotropha carboxidovorans 1 species genus 3 Nitrobacter 1 0 911 11 853 913 0 398 species 1 Nitrobacter winogradskyi species Nitrobacter hamburgensis 1 444 0 912 Variibacter 2 genus 1 16 528 0 1649510 Variibacter gotjawalensis 1 species 1333996 0 512 Bosea 5 genus 1 61 3969 0 85413 0 1526658 1055 species 1 Bosea vaviloviae 2853 2653178 0 3 no rank species 1 Bosea sp. AS-1 1052 0 2015316 1 Bosea sp. PAMC 26642 species 0 1792307 823 978 1842539 0 species Bosea sp. RAC05 1 1 genus Bradyrhizobium 11 374 0 11730 332 909 1274631 0 Bradyrhizobium icense 1 species 44255 0 947 Bradyrhizobium oligotrophicum 1 species 6256 2631580 0 no rank 6 1 Bradyrhizobium sp. ORS 285 species 1056 115808 0 1061 288000 0 species 1 Bradyrhizobium sp. BTAi1 1185 0 114615 1 Bradyrhizobium sp. ORS 278 species species 1 Bradyrhizobium sp. CCGE-LA001 0 1223566 1002 958 0 2057741 1 Bradyrhizobium sp. SK17 species 376 0 994 Bradyrhizobium sp. 1 species Bradyrhizobium diazoefficiens 1 species 1601 0 1355477 0 375 1685 1 Bradyrhizobium japonicum species 255475 0 4389 25 1 family Aurantimonadaceae 7 4 Martelella genus 1 0 293088 46 3518 no rank 1 0 2629616 1166 686597 0 1166 Martelella sp. AD-3 1 species 1 Martelella endophytica species 1179 1486262 0 0 293089 1127 1 Martelella mediterranea species Aureimonas 2 genus 1 16 846 0 414371 830 0 2615206 1 no rank Aureimonas sp. AU20 1 species 830 0 1349819 31993 0 1856 8 1 family 6 Methylocystaceae Methylocystis 3 genus 1 0 133 30 1093 1 no rank 2625913 0 522 187303 0 522 Methylocystis sp. SC2 1 species 541 655015 0 species 1 Methylocystis bryophila 425 0 755 12 1 2 Methylosinus genus 743 426 0 Methylosinus trichosporium 1 species family Bartonellaceae 18 1 0 772 32 5269 773 0 5237 46 1 Bartonella 17 genus 246 0 1318743 1 Bartonella ancashensis species Bartonella vinsonii 1 species 148 33047 0 473 774 0 Bartonella bacilliformis 1 species Bartonella australis 1 species 168 0 388640 1 Bartonella grahamii species 279 33045 0 0 1686310 1162 Bartonella apis 1 species 287 0 38323 1 Bartonella henselae species no rank 6 0 2645622 1397 species 1 Bartonella sp. WD16.2 0 1933904 353 species Bartonella sp. A1379B 1 0 1933910 155 1 Bartonella sp. JB63 species 1933907 0 231 Bartonella sp. Raccoon60 1 species 188 1933912 0 239 515256 0 species 1 Bartonella sp. 1-1C species Bartonella sp. JB15 1 0 1933906 231 0 803 278 species 1 Bartonella quintana 313 56426 0 species Bartonella clarridgeiae 1 1 Bartonella tribocorum species 0 85701 440 8 no rank 3351 0 82117 0 1632780 19 1123 genus 2 Phreatobacter 1 1104 1868589 0 Phreatobacter sp. S-12 1 species 2 Micavibrio genus 1 1 799 0 213485 1 Micavibrio aeruginosavorus species 349221 0 798 571 0 62654 clade 2 767891 0 571 5 1 2 Candidatus Puniceispirillum genus species 1 Candidatus Puniceispirillum marinum 566 0 767892 858 8 991903 0 1 genus 2 Polymorphum 1 Polymorphum gilvum species 0 991904 850 1631 0 2800060 order 6 Hyphomonadaceae 6 family 1 0 69657 17 1631 1 Hirschia 2 genus 2723 0 520 1 species 1 Hirschia baltica 2724 0 519 85 0 1094 17 1 genus 3 Hyphomonas 449 0 2630699 no rank 1 449 1906738 0 species 1 Hyphomonas sp. Mor2 628 0 81032 species 1 Hyphomonas neptunium 9 Pelagibacterales order 1 0 54526 2 2412 458 1 2045213 0 1 genus 2 Candidatus Fonsibacter 1 Candidatus Fonsibacter ubiquis species 457 0 1925548 family 6 Pelagibacteraceae 1 0 1655514 5 1952 1192 1655516 0 2 no rank 597 744985 0 species 1 alpha proteobacterium HIMB59 859653 0 595 species 1 alpha proteobacterium HIMB5 1 genus Candidatus Pelagibacter 3 198251 0 755 3 no rank 1 0 2647897 307 0 1002672 307 species 1 Candidatus Pelagibacter sp. IMCC9063 species Candidatus Pelagibacter ubique 1 445 0 198252 8 613 0 1191478 order Magnetococcales 4 1 605 13 1191479 0 1 Magnetococcaceae 3 family 1 genus Magnetococcus 2 592 1 162171 0 0 1124597 591 species Magnetococcus marinus 1 0 766 27 11056 Rickettsiales 53 order 1 Candidatus Midichloriaceae 3 family 1 11 281 0 1328881 270 1 411566 0 1 2 Candidatus Midichloria genus 0 234827 269 Candidatus Midichloria mitochondrii 1 species 22 Anaplasmataceae family 1 0 942 5 4199 Neorickettsia 4 genus 1 0 33993 2 247 107 0 33994 species Neorickettsia helminthoeca 1 species Neorickettsia risticii 1 73 0 950 1 Neorickettsia sennetsu species 0 951 65 tribe 8 0 952 1585 14 1585 0 953 Wolbachia 8 genus 1 7 no rank 2640676 0 1571 species 1 Wolbachia endosymbiont of Onchocerca volvulus 148 0 77551 species 1 Wolbachia endosymbiont of Onchocerca ochengi 153 0 100901 202 0 163164 species 1 Wolbachia endosymbiont of Drosophila melanogaster 187 66084 0 Wolbachia sp. wRi 1 species 1 Wolbachia endosymbiont of Cimex lectularius species 298 0 246273 0 77038 376 species Wolbachia endosymbiont of Drosophila simulans 1 Wolbachia endosymbiont of Brugia malayi 1 species 207 0 80849 0 768 225 genus 3 51 0 769 species Anaplasma centrale 1 95 770 0 1 Anaplasma marginale species 1 species group 79 106179 0 species Anaplasma phagocytophilum 1 79 948 0 1 genus Ehrlichia 6 943 0 2137 17 4 species group 106178 0 1833 Ehrlichia chaffeensis 1 species 0 945 440 1 Ehrlichia ruminantium species 584 779 0 944 0 493 species Ehrlichia canis 1 1 Ehrlichia muris species 0 35795 316 1 no rank 287 106181 0 species 1 Ehrlichia sp. HF 287 391036 0 775 0 5963 15 1 family Rickettsiaceae 26 1 genus 2115980 0 268 268 0 2115978 1 Candidatus Phycorickettsia trachydisci species 24 tribe 5680 33988 0 23 Rickettsia genus 1 0 780 555 5127 114292 0 881 species group 2 414 785 0 species Rickettsia typhi 1 Rickettsia prowazekii 1 species 0 782 467 114295 0 423 1 no rank 337479 0 423 species Rickettsia endosymbiont of Bemisia tabaci 1 2557 114277 0 species group 17 344 787 0 species Rickettsia australis 1 79 781 0 Rickettsia conorii 1 species species Rickettsia slovaca 1 0 35794 43 783 0 101 1 Rickettsia rickettsii species 0 35791 144 species Rickettsia massiliae 1 1 Rickettsia akari species 225 786 0 species Rickettsia montanensis 1 127 33991 0 1 Rickettsia peacockii species 0 47589 171 species 1 Rickettsia felis 379 0 42862 250 0 109232 1 Rickettsia monacensis species species Rickettsia parkeri 1 53 0 35792 1 Rickettsia rhipicephali species 0 33992 165 species 1 Rickettsia philipii 0 1105106 65 35790 0 81 1 Rickettsia japonica species 1 Rickettsia amblyommatis species 191 0 33989 Rickettsia heilongjiangensis 1 species 72 226665 0 species 1 Rickettsia africae 67 35788 0 2 species group 711 0 1129742 1 Rickettsia bellii species 455 33990 0 species Rickettsia canadensis 1 256 0 788 553 0 69474 1 genus 553 784 0 species 1 Orientia tsutsugamushi 586 0 1699067 no rank 1 1528098 0 586 species 1 Rickettsiales bacterium Ac37b 44035 383 204441 0 1 Rhodospirillales 65 order 0 41295 334 25825 family Rhodospirillaceae 30 1 genus 1 0 1263978 380 380 1263979 0 1 Candidatus Endolissoclinum faulkneri species 1241 29 1543704 0 1 2 Niveispirillum genus 1212 1612173 0 Niveispirillum cyanobacteriorum 1 species 554 11 1182780 0 1 genus Magnetospira 2 no rank 1 2685734 0 543 species 1 Magnetospira sp. QH-2 0 1288970 543 genus 2 Nitrospirillum 1 15 1988 0 1543705 species Nitrospirillum amazonense 1 28077 0 1973 1 genus 3 Rhodospirillum 1081 0 2435 65 species Rhodospirillum rubrum 1 829 1085 0 species 1 Rhodospirillum centenum 1541 0 34018 1 2 Pararhodospirillum genus 1612157 0 608 10 species Pararhodospirillum photometricum 1 1084 0 598 genus Haematospirillum 2 1 0 1804663 11 325 1 Haematospirillum jordaniae species 314 1549855 0 1 genus Tistrella 2 1434 23 171436 0 Tistrella mobilis 1 species 1411 0 171437 Azospirillum 5 genus 1 180 9817 0 191 species 1 Azospirillum thiophilum 2203 528244 0 species 1 Azospirillum humicireducens 0 1226968 905 0 193 3474 species 1 Azospirillum lipoferum 3055 0 192 1 Azospirillum brasilense species 1688 5 168934 0 1 genus Thalassospira 3 0 220697 815 species 1 Thalassospira xiamenensis species Thalassospira sp. CSC3H3 1 868 2048283 0 5 Magnetospirillum genus 1 95 5021 0 13134 1 Magnetospirillum gryphiswaldense species 0 55518 1411 Magnetospirillum magneticum 1 species 0 84159 1239 2276 0 2617991 2 no rank species 1 Magnetospirillum sp. XM-1 1087 0 1663591 species 1 Magnetospirillum sp. ME-1 1189 1639348 0 0 433 209 17827 34 Acetobacteraceae family 1 0 89583 16 909 genus 2 Gluconacetobacter 1 Gluconacetobacter diazotrophicus 1 species 893 33996 0 1 Asaia 2 genus 477 6 91914 0 0 91915 471 species Asaia bogorensis 1 42 1594 0 522 Acidiphilium 3 genus 1 0 62140 805 species Acidiphilium multivorum 1 species Acidiphilium cryptum 1 0 524 747 genus Roseomonas 3 1 71 2408 0 125216 no rank 1 2617492 0 1243 2018065 0 1243 Roseomonas sp. FDAARGOS_362 1 species 1094 257708 0 Roseomonas gilardii 1 species 320496 0 510 2 1 genus Neoasaia 2 1 Neoasaia chiangmaiensis species 508 320497 0 1 genus 153497 0 590 species Kozakia baliensis 1 590 0 153496 1268 22 364409 0 1 genus 2 Granulibacter species 1 Granulibacter bethesdensis 1246 0 364410 genus 5 Komagataeibacter 1 92 3179 0 1434011 Komagataeibacter europaeus 1 species 33995 0 383 1288 28448 0 species 1 Komagataeibacter xylinus 0 265960 838 species 1 Komagataeibacter nataicola species 1 Komagataeibacter medellinensis 578 1177712 0 1 Acetobacter 8 genus 4692 48 434 0 Acetobacter persici 1 species 588 0 1076596 337 1633874 0 species 1 Acetobacter oryzifermentans 0 151157 687 1 subgenus 0 435 687 Acetobacter aceti 1 species Acetobacter tropicalis 1 species 0 104102 610 446692 0 658 1 Acetobacter senegalensis species species Acetobacter pomorum 1 65959 0 380 1 Acetobacter pasteurianus species 1384 0 438 1 Gluconobacter 3 genus 441 0 1658 25 0 442 1161 1 Gluconobacter oxydans species 1 Gluconobacter albidus species 0 318683 472 1 genus Parasaccharibacter 2 1602345 0 333 2 species Parasaccharibacter apium 1 0 1510841 331 1 277 0 255473 order 4 Parvularculales 1 0 255474 4 276 family 3 Parvularculaceae 1 genus Parvularcula 2 1 0 208215 2 272 1 Parvularcula bermudensis species 0 208216 270 class 883 Gammaproteobacteria 1 0 1236 1117 549170 1 29 Cellvibrionales order 1706369 0 8036 47 Microbulbiferaceae 5 family 1 15 2052 0 1706373 48073 0 2037 16 1 4 Microbulbifer genus 1 Microbulbifer thermotolerans species 589 0 252514 0 260552 842 1 Microbulbifer agarilyticus species Microbulbifer aggregans 1 species 590 0 1769779 Halieaceae 4 family 1 0 1706372 11 897 11 886 0 1217416 genus 3 Halioglobus 1 1 Halioglobus pacificus species 0 930806 448 427 0 930805 Halioglobus japonicus 1 species 1 family 7 Spongiibacteraceae 1231 11 1706375 0 genus 2 Oceanicoccus 1 0 1084558 1 552 Oceanicoccus sagamiensis 1 species 551 0 716816 1434050 0 317 2 1 2 Zhongshania genus 315 0 1470434 species 1 Zhongshania aliphaticivorans Spongiibacter 2 genus 1 1 351 0 630749 350 2631504 0 no rank 1 Spongiibacter sp. IMCC21906 1 species 1620392 0 350 0 1706371 15 3809 Cellvibrionaceae 12 family 1 genus 1 413 0 316625 413 0 86304 Saccharophagus degradans 1 species 447467 0 777 1 1 2 Simiduia genus 1 Simiduia agarivorans species 0 447471 776 10 0 1557 9 1 genus Cellvibrio 4 0 2624793 917 2 no rank 0 1945512 382 1 Cellvibrio sp. PSBB023 species species Cellvibrio sp. PSBB006 1 535 0 1987723 631 0 155077 species Cellvibrio japonicus 1 0 2425 12 500 Teredinibacter 2 genus 1 0 2426 488 Teredinibacter turnerae 1 species 547 1 2036021 0 1 genus Agarilytica 2 1 Agarilytica rhodophyticola species 1737490 0 546 1 Xanthomonadales 54 order 43128 361 135614 0 1 Xanthomonadaceae 39 family 35641 376 32033 0 1 genus 9 Stenotrophomonas 12585 303 40323 0 3257 196198 0 no rank 4 965 1904944 0 Stenotrophomonas sp. LM091 1 species species 1 Stenotrophomonas sp. MYb57 746 0 1827305 species 1 Stenotrophomonas sp. KCTC 12332 661 1793721 0 885 0 2005046 species 1 Stenotrophomonas sp. WZN-1 species Stenotrophomonas acidaminiphila 1 128780 0 1628 species 1 Stenotrophomonas rhizophila 816 216778 0 species group 1 0 995085 5864 40324 0 5864 species Stenotrophomonas maltophilia 1 Stenotrophomonas nitritireducens 1 species 717 0 83617 37 2683 0 83618 genus 3 Pseudoxanthomonas 1 species Pseudoxanthomonas spadix 1 415229 0 739 314722 0 1907 Pseudoxanthomonas suwonensis 1 species 446 1 2370 0 1 genus Xylella 2 445 0 2371 species Xylella fastidiosa 1 Luteimonas 2 genus 1 3 616 0 83614 species 1 Luteimonas sp. 100111 0 2006110 613 17 Xanthomonas genus 1 0 338 741 14574 species Xanthomonas hortorum 1 0 56454 649 Xanthomonas phaseoli 1 species 657 1985254 0 0 53413 539 species 1 Xanthomonas axonopodis species Xanthomonas vasicola 1 355 0 56459 species 1 Xanthomonas campestris 0 339 1931 1377 343 0 species Xanthomonas translucens 1 393 0 29447 species Xanthomonas albilineans 1 0 643453 2766 species group 2 Xanthomonas citri 1 species 346 0 2080 686 366648 0 species Xanthomonas fuscans 1 Xanthomonas alfalfae 1 species 366650 0 585 Xanthomonas euvesicatoria 1 species 574 456327 0 Xanthomonas sacchari 1 species 0 56458 954 species 1 Xanthomonas fragariae 598 0 48664 711 0 442694 1 Xanthomonas perforans species 0 56460 663 species Xanthomonas vesicatoria 1 species Xanthomonas oryzae 1 1081 347 0 4361 62 68 0 1 5 Lysobacter genus species 1 Lysobacter antibioticus 0 84531 1214 Lysobacter gummosus 1 species 1062 0 262324 969 69 0 species Lysobacter enzymogenes 1 Lysobacter capsici 1 species 435897 0 1054 0 1775411 115 7126 family Rhodanobacteraceae 14 1 0 323413 18 1067 genus Dokdonella 2 1 1 Dokdonella koreensis species 1049 0 323415 242605 0 609 8 1 genus 2 Luteibacter species Luteibacter rhizovicinus 1 242606 0 601 0 2233801 427 genus 1 0 2021234 427 species Xanthomonadales bacterium D13 1 2 Frateuria genus 1 5 828 0 70411 species 1 Frateuria aurantia 0 81475 823 57 3140 0 231454 Dyella 4 genus 1 Dyella japonica 1 species 0 231455 1112 species 1 Dyella thiooxydans 1166 0 445710 Dyella jiangningensis 1 species 0 1379159 805 Rhodanobacter 2 genus 1 8 940 0 75309 1 Rhodanobacter denitrificans species 932 0 666685 13466 5 72273 0 1 order Thiotrichales 35 0 135617 2 1075 Thiotrichaceae 5 family 1 genus 2 Beggiatoa 1 1 633 0 1021 288004 0 632 species 1 Beggiatoa leptomitoformis 1 Thioploca 2 genus 40751 0 440 14 0 40754 426 species 1 Thioploca ingrica 1 family Francisellaceae 15 34064 0 9204 7 525 2 1869285 0 1 genus 2 Allofrancisella species 1 Allofrancisella guangzhouensis 0 594679 523 262 0 8672 59 1 genus 12 Francisella 0 263 2106 Francisella tularensis 1 species 0 573569 358 species 1 Francisella sp. TX077308 species 1 Francisella sp. CA97-1460 0 1542390 733 28110 0 1505 species 1 Francisella philomiragia 0 657445 926 1 Francisella noatunensis species 585 0 573570 species Francisella sp. TX077310 1 468 0 622488 species 1 Francisella hispaniensis 1 Francisella halioticida species 0 549298 506 1063 2610885 0 no rank 2 species 1 Francisella sp. MA067296 484 475375 0 species Francisella sp. FSC1006 1 579 0 1547445 363 0 954 species Francisella persica 1 15 3182 0 135616 Piscirickettsiaceae 14 family 1 genus Methylophaga 3 1 3 824 0 40222 species 1 Methylophaga frappieri 341 754477 0 species Methylophaga nitratireducenticrescens 1 754476 0 480 genus Cycloclasticus 4 1 0 34067 3 895 2621467 0 553 2 no rank 251 0 385025 species Cycloclasticus sp. P1 1 302 0 728003 Cycloclasticus sp. PY97N 1 species species 1 Cycloclasticus zancles 339 0 1329899 715 0 1237 1 genus Piscirickettsia salmonis 1 species 715 0 1238 259 40 28884 0 1 2 Hydrogenovibrio genus 219 0 39765 species 1 Hydrogenovibrio crunogenus 474 1 933 0 1 genus 3 Thiomicrospira 147268 0 266 Thiomicrospira cyclica 1 species species Thiomicrospira aerophila 1 0 92245 207 12 no rank 0 118884 3736 1 genus 498 1524249 0 1 Pseudohongiella spirulinae species 0 1249552 498 Candidatus Thioglobus 3 genus 1 0 655184 1 533 1 Candidatus Thioglobus singularis species 338 0 1427364 species 1 Candidatus Thioglobus autotrophicus 194 0 1705394 1 2 Sedimenticola genus 633 2 349742 0 species 1 Sedimenticola thiotaurini 1543721 0 631 1 clade 650 0 198346 species Candidatus Baumannia cicadellinicola 1 186490 0 650 clade 3 864 32036 0 348 0 113267 1 Bathymodiolus septemdierum thioautotrophic gill symbiont species 1 genus 0 1541743 180 1 Candidatus Ruthia magnifica species 180 386487 0 336 410330 0 Calyptogena okutanii thioautotrophic gill symbiont 1 species 1 genus Thiolapillus 2 558 6 1608298 0 Thiolapillus brandeum 1 species 552 0 1076588 0 1775403 3 663 4 Nevskiales order 1 family 2 2689614 0 659 genus Steroidobacter 2 1 3 659 0 469322 0 465721 656 Steroidobacter denitrificans 1 species family Sinobacteraceae 1 568386 0 1 order Pseudomonadales 129 1 488 123603 0 72274 468 0 19820 48 1 family 42 Moraxellaceae Psychrobacter 11 genus 1 0 497 103 3424 0 45610 178 Psychrobacter urativorans 1 species 449 330922 0 species Psychrobacter cryohalolentis 1 species Psychrobacter alimentarius 1 243 0 261164 1971 196806 0 6 no rank species Psychrobacter sp. PRwf-1 1 275 349106 0 species 1 Psychrobacter sp. AntiMn-1 379 0 1720344 345 0 571800 1 Psychrobacter sp. G species species 1 Psychrobacter sp. P11G5 0 1699624 301 species Psychrobacter sp. DAB_AL43B 1 421 1028416 0 250 0 1699622 species Psychrobacter sp. P2G3 1 species Psychrobacter arcticus 1 480 0 334543 Acinetobacter 25 genus 1 0 469 100 14239 433 487316 0 1 Acinetobacter soli species 853 0 202950 1 species strain 1 Acinetobacter sp. ADP1 62977 0 853 Acinetobacter haemolyticus 1 species 0 29430 469 592 40215 0 species 1 Acinetobacter junii 756892 0 425 Acinetobacter indicus 1 species 5044 909768 0 species group 5 526 0 106654 species Acinetobacter nosocomialis 1 species 1 Acinetobacter lactucae 394 1785128 0 Acinetobacter calcoaceticus 1 species 768 0 471 Acinetobacter baumannii 1 species 1968 0 470 species 1 Acinetobacter pittii 48296 0 1388 604 0 40216 species Acinetobacter radioresistens 1 106648 0 586 species 1 Acinetobacter bereziniae Acinetobacter schindleri 1 species 0 108981 362 1 Acinetobacter oleivorans species 523 1148157 0 0 196816 2857 7 no rank 0 1758189 421 1 Acinetobacter sp. ACNIH2 species species Acinetobacter sp. NCu2D-2 1 1608473 0 412 Acinetobacter sp. ACNIH1 1 species 0 1636603 459 1 Acinetobacter sp. LoGeW2-3 species 603 0 1808001 1407071 0 397 1 Acinetobacter sp. TGL-Y2 species 0 2079596 303 Acinetobacter sp. SWBY1 1 species 0 1646498 262 Acinetobacter sp. TTH0-4 1 species 1 Acinetobacter larvae species 280 0 1789224 501 40214 0 1 Acinetobacter johnsonii species species Acinetobacter equi 1 610 0 1324350 1 genus 5 Moraxella 2109 4 475 0 359 0 480 Moraxella catarrhalis 1 species 908 34062 0 species Moraxella osloensis 1 1 Moraxella ovis species 0 29433 277 561 386891 0 1 Moraxella bovoculi species 135621 0 103295 583 1 family 86 Pseudomonadaceae 1 418 0 1849530 2 Oblitimonas genus 1 Oblitimonas alkaliphila 1 species 0 1697053 417 subfamily 3 2987 0 351 2987 39 352 0 1 genus Azotobacter 3 1 Azotobacter chroococcum species 1746 0 353 1202 354 0 species Azotobacter vinelandii 1 Pseudomonas 80 genus 1 0 286 3198 99307 Pseudomonas rhizosphaerae 1 species 530 216142 0 species 1 Pseudomonas entomophila 312306 0 683 6 species group 0 136841 13497 0 1232139 1368 species subgroup 1 1 Pseudomonas furukawaii species 0 1149133 1368 0 43263 1025 1 Pseudomonas alcaligenes species 2281 0 53408 Pseudomonas citronellolis 1 species 1165 53412 0 species 1 Pseudomonas resinovorans 4586 0 287 1 Pseudomonas aeruginosa species 3072 0 300 species Pseudomonas mendocina 1 no rank 30 20439 0 196821 693 0 1338689 species 1 Pseudomonas sp. JY-Q species 1 Pseudomonas sp. PONIH3 688 0 1636610 1 Pseudomonas sp. SWI36 species 2083052 0 777 1 Pseudomonas sp. ATCC 13867 species 0 1294143 1028 0 1259844 761 species Pseudomonas sp. FGI182 1 1 Pseudomonas sp. SWI44 species 507 2083053 0 1 Pseudomonas sp. GR 6-02 species 0 1659194 500 895 0 1028989 Pseudomonas sp. StFLB209 1 species 0 1415630 543 Pseudomonas sp. TKP 1 species 0 1649877 681 species Pseudomonas sp. CCOS 191 1 species 1 Pseudomonas sp. XWY-1 716 2069256 0 species 1 Pseudomonas sp. TCU-HL1 973 1856685 0 Pseudomonas sp. URMO17WK12:I11 1 species 1165 0 1283291 species Pseudomonas sp. NC02 1 2067572 0 641 species 1 Pseudomonas sp. MRSN12121 1611770 0 835 1 Pseudomonas sp. SWI6 species 0 2083051 534 555 1207075 0 species Pseudomonas sp. UW4 1 507 1931241 0 species 1 Pseudomonas sp. S-6-2 478 0 2049589 1 Pseudomonas sp. HLS-6 species 1 Pseudomonas sp. St29 species 774 0 1500687 species Pseudomonas sp. MYb193 1 490 1827300 0 species 1 Pseudomonas sp. LPH1 830 0 1898684 species Pseudomonas sp. Os17 1 1500686 0 805 740 0 2083055 species 1 Pseudomonas sp. LH1G9 698 2018067 0 species Pseudomonas sp. FDAARGOS_380 1 species Pseudomonas sp. CC6-YY-74 1 0 1930532 678 species Pseudomonas sp. VLB120 1 69328 0 557 species Pseudomonas sp. DR 5-09 1 1534110 0 658 275 0 1981174 species Pseudomonas sp. M30-35 1 0 2083054 457 Pseudomonas sp. LG1D9 1 species 136842 0 4840 2 species group species 1 Pseudomonas fragi 989 296 0 587753 0 3851 species 1 Pseudomonas chlororaphis 136843 0 13688 species group 9 0 75612 674 1 Pseudomonas mandelii species 542 0 76758 species 1 Pseudomonas orientalis 1 Pseudomonas azotoformans species 47878 0 1196 species 1 Pseudomonas trivialis 0 200450 948 0 76761 678 species Pseudomonas veronii 1 1058 380021 0 1 Pseudomonas protegens species 200451 0 537 Pseudomonas poae 1 species 1 Pseudomonas corrugata species 47879 0 657 294 0 7398 Pseudomonas fluorescens 1 species 1 Pseudomonas cremoricolorata species 634 0 157783 Pseudomonas alcaliphila 1 species 101564 0 840 8 species group 136849 0 9989 2775504 0 462 no rank 1 1 Pseudomonas sp. Lz4W species 462 1206777 0 species subgroup 2 0 251698 2085 1 Pseudomonas savastanoi species 29438 0 1040 1 Pseudomonas amygdali species 1045 0 47877 0 251695 4429 species subgroup 1 0 317 4429 Pseudomonas syringae 1 species species 1 Pseudomonas avellanae 0 46257 609 species Pseudomonas cichorii 1 0 36746 443 1 Pseudomonas syringae group genomosp. 3 species 0 251701 1157 804 33069 0 species 1 Pseudomonas viridiflava 104087 0 1614 species 1 Pseudomonas frederiksbergensis Pseudomonas versuta 1 species 0 1788301 415 Pseudomonas koreensis 1 species 0 198620 1047 species Pseudomonas parafulva 1 157782 0 1169 Pseudomonas knackmussii 1 species 968 65741 0 14325 136845 0 species group 6 1 Pseudomonas fulva species 47880 0 1228 species 1 Pseudomonas oryzihabitans 795 0 47885 Pseudomonas mosselii 1 species 1599 78327 0 1 Pseudomonas plecoglossicida species 0 70775 671 8207 0 303 species Pseudomonas putida 1 76759 0 1825 Pseudomonas monteilii 1 species 219572 0 551 Pseudomonas antarctica 1 species 668 1583341 0 Pseudomonas cerasi 1 species Pseudomonas lurida 1 species 244566 0 455 species Pseudomonas silesiensis 1 0 1853130 598 919 0 237610 1 Pseudomonas psychrotolerans species 0 237609 675 species 1 Pseudomonas alkylphenolica 2 species group 6284 136846 0 Pseudomonas balearica 1 species 945 74829 0 5339 578833 0 1 species subgroup 5339 0 316 Pseudomonas stutzeri 1 species 930166 0 1281 species Pseudomonas brassicacearum 1 0 135623 20 24535 Vibrionales 43 order 1 1 family Vibrionaceae 42 24515 81 641 0 16 1727 0 511678 genus Aliivibrio 4 1 Aliivibrio wodanis 1 species 636 80852 0 Aliivibrio fischeri 1 species 578 0 668 497 40269 0 Aliivibrio salmonicida 1 species 398 19239 0 662 genus Vibrio 30 1 190893 0 929 Vibrio coralliilyticus 1 species 45658 0 571 1 Vibrio scophthalmi species 0 666 947 species Vibrio cholerae 1 Vibrio gazogenes 1 species 687 0 723 species group 1 302 0 1891919 1 Vibrio tubiashii species 302 0 29498 1430 672 0 Vibrio vulnificus 1 species 0 1435069 519 species 1 Vibrio tritonius 676 0 977 species 1 Vibrio fluvialis 835 2614977 0 2 no rank 0 1116375 412 1 Vibrio sp. EJY3 species 423 2014742 0 species Vibrio sp. 2521-89 1 species 1 Vibrio hyugaensis 332 1534743 0 species 1 Vibrio tapetis 52443 0 399 553239 0 378 species Vibrio breoganii 1 species 1 Vibrio anguillarum 691 55601 0 species Vibrio furnissii 1 0 29494 618 0 28173 601 1 Vibrio nigripulchritudo species 313 2025808 0 1 Vibrio qinghaiensis species species 1 Vibrio mimicus 0 674 741 species group 10 717610 0 7163 Vibrio campbellii 1 species 969 680 0 0 696485 449 species 1 Vibrio owensii 0 663 1171 1 Vibrio alginolyticus species 595 0 669 Vibrio harveyi 1 species 1241 670 0 Vibrio parahaemolyticus 1 species 0 2315253 1074 2 species subgroup 696 50719 0 species 1 Vibrio diabolicus Vibrio antiquarius 1 species 0 150340 378 species Vibrio natriegens 1 925 691 0 438 0 766224 Vibrio jasicida 1 species species Vibrio rotiferianus 1 301 0 190895 212663 0 372 1 Vibrio tasmaniensis species 0 246861 1 537 Grimontia 2 genus 1 Grimontia hollisae 1 species 0 673 536 genus 1 841 0 2042066 1755811 0 841 species 1 Paraphotobacterium marinum Photobacterium 4 genus 1 6 2090 0 657 species 1 Photobacterium damselae 675 38293 0 0 74109 607 species Photobacterium profundum 1 802 1295392 0 Photobacterium gaetbulicola 1 species 103 Alteromonadales order 1 112 37997 0 135622 1 3 Moritellaceae family 552 2 267891 0 1 genus Moritella 2 58050 0 550 2 80854 0 548 1 Moritella viscosa species 267889 0 2998 5 1 Colwelliaceae 8 family genus 1 301 1518149 0 301 1763536 0 Thalassotalea crassostreae 1 species 28228 0 2692 19 1 genus Colwellia 6 1967665 0 424 Colwellia beringensis 1 species species Colwellia psychrerythraea 1 563 28229 0 196834 0 1686 3 no rank 559 0 1816219 species 1 Colwellia sp. PAMC 21821 559 0 58049 species 1 Colwellia sp. MT41 568 0 1816218 1 Colwellia sp. PAMC 20917 species 0 267893 7 1006 6 Idiomarinaceae family 1 1 5 Idiomarina genus 135575 0 999 7 619 0 2614829 2 no rank species 1 Idiomarina sp. X4 273 0 2055892 Idiomarina sp. OT37-5b 1 species 0 2100422 346 Idiomarina piscisalsi 1 species 1096243 0 147 1 Idiomarina loihiensis species 226 0 135577 0 267892 4 1104 family Ferrimonadaceae 3 1 1100 13 44011 0 1 genus Ferrimonas 2 0 44012 1087 species Ferrimonas balearica 1 0 72275 117 12161 family 29 Alteromonadaceae 1 1 10 Alteromonas genus 4422 19 226 0 species Alteromonas addita 1 398 0 287094 species Alteromonas macleodii 1 28108 0 932 589873 0 416 Alteromonas australica 1 species 3 no rank 1263 2614992 0 species 1 Alteromonas sp. Mac1 387 1777491 0 species Alteromonas sp. MB-3u-76 1 2058133 0 457 species Alteromonas sp. RW2A1 1 0 1917158 419 273 0 715451 Alteromonas naphthalenivorans 1 species species Alteromonas stellipolaris 1 0 233316 489 1 Alteromonas mediterranea species 632 314275 0 1 genus 10 Marinobacter 2742 0 5531 69 no rank 3 1803 83889 0 species Marinobacter sp. BSs20148 1 423 0 490759 678 0 1749259 species 1 Marinobacter sp. LQ44 0 1671721 702 species Marinobacter sp. CP1 1 1 Marinobacter salinus species 394 1874317 0 species Marinobacter hydrocarbonoclasticus 1 1069 0 2743 1 Marinobacter psychrophilus species 371 0 330734 Marinobacter salarius 1 species 0 1420917 662 707 0 1033846 species Marinobacter adhaerens 1 species 1 Marinobacter similis 0 1420916 456 1 810 0 89404 genus Glaciecola 3 1 1 no rank 2618684 0 390 983545 0 390 1 Glaciecola sp. 4H-3-7+YE-5 species 0 300231 419 species Glaciecola nitratireducens 1 2 Agarivorans genus 1 8 246 0 261825 Agarivorans gilvus 1 species 238 0 680279 1751872 0 681 23 1 genus 2 Lacimicrobium 658 1526571 0 1 Lacimicrobium alkaliphilum species genus 1 0 1621534 354 species 1 Paraglaciecola psychrophila 354 0 326544 3 family 950 267894 0 950 3 67572 0 1 genus Psychromonas 3 0 2614957 448 no rank 1 314282 0 448 species Psychromonas sp. CNPT3 1 357794 0 499 Psychromonas ingrahamii 1 species 1 25 Shewanellaceae family 267890 0 10091 28 1 24 Shewanella genus 10063 251 22 0 271097 0 551 species 1 Shewanella sediminis Shewanella denitrificans 1 species 231 192073 0 614 60478 0 species Shewanella amazonensis 1 303 0 2018305 species Shewanella bicestrii 1 655 359303 0 species 1 Shewanella loihica Shewanella psychrophila 1 species 401 0 225848 343 260364 0 1 Shewanella marisflavi species 6 no rank 196818 0 1939 436 0 2029986 1 Shewanella sp. WE21 species 294 94122 0 species 1 Shewanella sp. ANA-3 species 1 Shewanella sp. MR-4 60480 0 260 365 2059264 0 Shewanella sp. Pdp11 1 species 389 351745 0 species Shewanella sp. W3-18-1 1 1 Shewanella sp. MR-7 species 195 0 60481 0 60961 381 1 Shewanella woodyi species 0 70863 416 species 1 Shewanella oneidensis 0 271098 470 Shewanella halifaxensis 1 species 1 Shewanella putrefaciens species 0 24 447 62322 0 1010 species Shewanella baltica 1 0 93973 496 1 Shewanella japonica species 322 0 56812 species 1 Shewanella frigidimarina 1 Shewanella piezotolerans species 365 0 404011 species Shewanella violacea 1 60217 0 382 1 Shewanella pealeana species 70864 0 486 25 Pseudoalteromonadaceae family 1 0 267888 16 9023 1 genus Pseudoalteromonas 24 53246 0 9007 175 1 Pseudoalteromonas nigrifaciens species 370 28109 0 247523 0 356 1 Pseudoalteromonas aliena species Pseudoalteromonas translucida 1 species 166935 0 408 Pseudoalteromonas luteoviolacea 1 species 43657 0 398 250 0 152297 1 Pseudoalteromonas issachenkonii species species 1 Pseudoalteromonas haloplanktis 263 0 228 species Pseudoalteromonas espejiana 1 249 28107 0 species 1 Pseudoalteromonas arctica 428 0 394751 Pseudoalteromonas piratica 1 species 443 1348114 0 0 314281 542 species 1 Pseudoalteromonas tunicata Pseudoalteromonas marina 1 species 318 0 267375 Pseudoalteromonas spongiae 1 species 640 298657 0 0 43662 446 Pseudoalteromonas piscicida 1 species 1 Pseudoalteromonas tetraodonis species 214 0 43659 194690 0 1991 5 no rank species Pseudoalteromonas sp. Bsw20308 1 391 283699 0 species 1 Pseudoalteromonas sp. NC201 0 1514074 423 0 1761891 376 species 1 Pseudoalteromonas sp. 13-15 234831 0 260 species Pseudoalteromonas sp. SM9913 1 541 1720343 0 species 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1 Pseudoalteromonas rubra 43658 0 339 species 1 Pseudoalteromonas agarivorans 176102 0 314 species Pseudoalteromonas atlantica 1 288 0 576 161398 0 287 species Pseudoalteromonas phenolica 1 6799 2 118969 0 1 order Legionellales 20 1 5 Coxiellaceae family 118968 0 688 28 0 776 1 450 Coxiella 3 genus 1 Coxiella burnetii 1 species 0 777 336 no rank 1 0 2676648 113 species Coxiella endosymbiont of Amblyomma americanum 1 113 325775 0 210 0 134284 no rank 1 species Coxiella-like endosymbiont 1 0 1592897 210 Legionellaceae 14 family 1 0 444 6 6109 1 genus 363 0 465 Tatlockia micdadei 1 species 363 451 0 445 0 5740 12 1 genus 12 Legionella species 1 Legionella fallonii 0 96230 418 1 Legionella clemsonensis species 411 1867846 0 29423 0 313 Legionella oakridgensis 1 species Legionella longbeachae 1 species 634 450 0 1 Legionella endosymbiont of Polyplax serrata species 238 0 2005262 1 Legionella lansingensis species 45067 0 253 329 0 452 Legionella spiritensis 1 species 1670 0 446 species 1 Legionella pneumophila 461 66969 0 Legionella waltersii 1 species species Legionella hackeliae 1 486 0 449 Legionella sainthelensi 1 species 28087 0 515 1 69 Oceanospirillales order 135619 0 25004 193 1920240 0 1253 10 1 Kangiellaceae 6 family 1 genus Kangiella 5 1243 47 261963 0 species Kangiella profundi 1 1561924 0 272 species 1 Kangiella geojedonensis 242 914150 0 261964 0 411 1 Kangiella koreensis species 271 0 1144748 species 1 Kangiella sediminilitoris 1 3 Hahellaceae family 224379 0 920 1 1 genus 2 Hahella 158481 0 919 5 1 Hahella chejuensis species 158327 0 914 family 31 Halomonadaceae 1 0 28256 199 13738 1509 4 504090 0 1 Kushneria 3 genus 826 698828 0 species 1 Kushneria konosiri Kushneria marisflavi 1 species 0 157779 679 404432 0 921 11 1 genus 2 Salinicola 1 Salinicola tamaricis species 910 0 1771309 413 114403 0 no rank 4 1 genus 2 Candidatus Evansia 1495768 0 220 1 Candidatus Evansia muelleri 1 species 219 1495769 0 114185 0 45 genus 1 0 114186 45 1 Candidatus Carsonella ruddii species 0 235572 148 1 genus Candidatus Portiera aleyrodidarum 1 species 91844 0 148 7 517 0 42054 genus 2 Chromohalobacter 1 1 Chromohalobacter salexigens species 510 158080 0 2 Halotalea genus 1 8 712 0 376488 species 1 Halotalea alkalilenta 376489 0 704 1 Cobetia 2 genus 906 4 204286 0 species Cobetia marina 1 902 28258 0 1 genus 15 Halomonas 8561 88 2745 0 0 1897729 889 Halomonas aestuarii 1 species 8 no rank 2609666 0 4128 1504981 0 394 species 1 Halomonas sp. KO116 1 Halomonas sp. 'Soap Lake #6' species 376 1949203 0 0 2136172 827 species 1 Halomonas sp. SF2003 species 1 Halomonas sp. GFAJ-1 321 1118153 0 1 Halomonas sp. R57-5 species 530 1610576 0 376 0 1962264 Halomonas sp. 'Soap Lake #7' 1 species 1 Halomonas sp. 1513 species 1003 1883416 0 0 1971364 301 species 1 Halomonas sp. GT 335 0 213554 1 Halomonas campaniensis species species 1 Halomonas beimenensis 974 0 475662 species Halomonas hydrothermalis 1 668 0 115561 1 Halomonas huangheensis species 669 1178482 0 species 1 Halomonas chromatireducens 0 507626 810 224372 0 3674 22 1 Alcanivoracaceae 9 family 1 2 Ketobacter genus 2025617 0 614 41 0 1917421 573 Ketobacter alkanivorans 1 species 45 3038 0 59753 genus Alcanivorax 6 1 1 Alcanivorax pacificus species 970 0 1306787 1 Alcanivorax dieselolei species 827 285091 0 0 1094342 694 species 1 Alcanivorax xenomutans no rank 1 2638842 0 251 251 1113728 0 1 Alcanivorax sp. NBRC 101098 species species 1 Alcanivorax borkumensis 59754 0 251 191033 0 503 family 2 43 503 0 141450 Oleiphilus 2 genus 1 Oleiphilus messinensis 1 species 141451 0 460 255527 0 1253 6 1 5 Saccharospirillaceae family 230494 0 438 2 1 Reinekea 2 genus species 1 Reinekea forsetii 0 1336806 436 0 1445504 7 809 Gynuella 2 genus 1 1 Gynuella sunshinyii species 802 1445505 0 3470 20 135620 0 1 family 12 Oceanospirillaceae 310 1 187492 0 1 genus 2 Thalassolituus 187493 0 309 1 Thalassolituus oleivorans species 1 4 Marinomonas genus 1453 6 28253 0 450 119864 0 1 Marinomonas mediterranea species 936476 0 475 species 1 Marinomonas posidonica 522 0 196814 no rank 1 400668 0 522 species 1 Marinomonas sp. MWYL1 1 genus 447 0 188907 species 1 Oleispira antarctica 188908 0 447 2 Bacterioplanes genus 1 0 1537406 2 444 Bacterioplanes sanyensis 1 species 442 0 1249553 2 Marinobacterium genus 1 5 796 0 48075 Marinobacterium aestuarii 1 species 791 1821621 0 1240482 0 1371 3 1 order 5 Orbales 1 family 4 Orbaceae 1240483 0 1368 7 genus 1 511 1335631 0 1 Frischella perrara species 511 1267021 0 2 Gilliamella genus 1 5 850 0 1193503 Gilliamella apicola 1 species 0 1196095 845 1725 26 1692040 0 1 order Acidiferrobacterales 6 0 1692041 51 1699 family 5 Acidiferrobacteraceae 1 939 13 1744881 0 1 genus 2 Sulfuricaulis 1620215 0 926 species 1 Sulfuricaulis limicola 1692042 0 709 13 1 Sulfurifustis 2 genus Sulfurifustis variabilis 1 species 0 1675686 696 135624 0 27284 111 1 29 Aeromonadales order 27173 195 84642 0 1 family Aeromonadaceae 28 genus 2 Tolumonas 1 2 604 0 43947 Tolumonas auensis 1 species 602 0 43948 2 Zobellella genus 1 0 347533 9 1303 Zobellella denitrificans 1 species 1294 347534 0 22957 1383 642 0 1 genus Aeromonas 18 2752 0 654 Aeromonas veronii 1 species 6789 257493 0 8 no rank Aeromonas sp. ASNIH3 1 species 0 1636608 821 1 Aeromonas sp. ASNIH4 species 1636609 0 929 1 Aeromonas sp. CA23 species 2033032 0 993 692 1920107 0 species Aeromonas sp. ASNIH7 1 1636607 0 658 species 1 Aeromonas sp. ASNIH2 753 1636606 0 1 Aeromonas sp. ASNIH1 species Aeromonas sp. CU5 1 species 840 2033033 0 species Aeromonas sp. ASNIH5 1 0 1758179 1103 920 0 558964 species Aeromonas aquatica 1 Aeromonas hydrophila 1 species 0 644 5032 1 Aeromonas rivipollensis species 1051 948519 0 1 Aeromonas salmonicida species 1606 0 645 species Aeromonas dhakensis 1 0 196024 1087 700 648 0 species 1 Aeromonas caviae 0 651 801 1 Aeromonas media species 836 0 652 species Aeromonas schubertii 1 genus 3 Oceanisphaera 1 0 225143 8 750 Oceanisphaera profunda 1 species 1416627 0 540 1 Oceanisphaera sp. AMac2203 species 202 1903694 0 1 genus 2 Oceanimonas 129577 0 1364 7 1 no rank 1357 2636315 0 Oceanimonas sp. GK1 1 species 0 511062 1357 Methylococcales 12 order 1 25 5407 0 135618 5382 63 403 0 1 11 Methylococcaceae family 13 687 0 413 genus Methylococcus 2 1 674 0 414 species 1 Methylococcus capsulatus 39773 0 957 1 genus 0 271065 957 species Methylomicrobium alcaliphilum 1 443 7 762296 0 1 2 Methylovulum genus species 1 Methylovulum psychrotolerans 436 1704499 0 3232 31 416 0 1 genus Methylomonas 5 996 702114 0 Methylomonas koyamae 1 species Methylomonas methanica 1 species 0 421 512 1 Methylomonas denitrificans species 599 1538553 0 2608980 0 1094 1 no rank 1 Methylomonas sp. DH-1 species 0 1727196 1094 33811 0 1534 2 no rank species gamma proteobacterium HdN1 1 0 83406 765 1 endosymbiont of unidentified scaly snail isolate Monju species 769 1248727 0 order 3 276 135615 0 276 1 868 0 1 family 3 Cardiobacteriaceae 275 1 869 0 1 Dichelobacter 2 genus 274 870 0 species 1 Dichelobacter nodosus Chromatiales 51 order 1 0 135613 239 17896 1 family 18 Ectothiorhodospiraceae 7020 83 72276 0 genus 2 Alkalilimnicola 1 7 804 0 133193 1 Alkalilimnicola ehrlichii species 0 351052 797 2 Ectothiorhodospira genus 1 6 866 0 1051 1 no rank 0 2684909 860 1 Ectothiorhodospira sp. BSL-9 species 860 0 1442136 2 Acidihalobacter genus 1 0 1765964 9 480 0 160660 471 species 1 Acidihalobacter prosperus 5 689 0 85108 2 Halorhodospira genus 1 species Halorhodospira halophila 1 1053 0 684 0 106633 46 3284 genus Thioalkalivibrio 6 1 561 0 108010 species 1 Thioalkalivibrio paradoxus Thioalkalivibrio versutus 1 species 0 106634 671 no rank 1 0 2621013 521 1 Thioalkalivibrio sp. K90mix species 396595 0 521 species 1 Thioalkalivibrio nitratireducens 0 186931 449 0 1033854 1036 1 Thioalkalivibrio sulfidiphilus species genus 3 Spiribacter 1 9 814 0 1335745 Spiribacter curvatus 1 species 1335757 0 513 292 0 1335746 species Spiribacter salinus 1 no rank 2 970 0 451214 17 970 0 1273155 genus 2 Thiohalobacter 1 Thiohalobacter thiocyanaticus 1 species 0 585455 953 1 18 Chromatiaceae family 1046 0 6976 48 genus 2 Marichromatium 1 0 85076 13 936 species 1 Marichromatium purpuratum 37487 0 923 1 Nitrosococcus 4 genus 614 3 1227 0 133539 0 257 species Nitrosococcus halophilus 1 198 1229 0 Nitrosococcus oceani 1 species 473531 0 156 species 1 Nitrosococcus watsonii genus Allochromatium 2 1 22 1114 0 85072 1 Allochromatium vinosum species 0 1049 1092 1 Thiocystis 2 genus 1047 16 13724 0 1031 0 73141 species 1 Thiocystis violascens 82569 0 932 no rank 1 1978339 0 932 1 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1 2 Thioflavicoccus genus 156885 0 691 11 species Thioflavicoccus mobilis 1 680 80679 0 1 genus Candidatus Nitrosoglobus 2 1980513 0 195 1 species 1 Candidatus Nitrosoglobus terrae 0 1630141 194 53392 0 1399 14 1 2 Thiodictyon genus 1385 1166950 0 1 Candidatus Thiodictyon syntrophicum species 0 1676141 6 605 3 Wenzhouxiangellaceae family 1 Wenzhouxiangella 2 genus 1 14 599 0 1676142 0 1579979 585 species 1 Wenzhouxiangella marina 255526 0 910 19 1 family 4 Halothiobacillaceae 109262 0 891 23 1 genus Halothiobacillus 3 927 0 428 1 Halothiobacillus neapolitanus species 0 2636392 440 1 no rank species Halothiobacillus sp. LS2 1 440 1860122 0 448 0 1738654 family 2 1 Woeseia 2 genus 448 14 1738655 0 434 1548547 0 1 Woeseia oceani species family Granulosicoccaceae 3 1 0 449719 4 728 1 genus Granulosicoccus 2 724 3 437504 0 721 0 437505 species 1 Granulosicoccus antarcticus 135625 0 16567 4 1 30 Pasteurellales order 1 29 Pasteurellaceae family 16563 80 712 0 genus 1 697331 0 646 species 1 [Mannheimia] succiniciproducens 157673 0 646 genus Gallibacterium 2 1 0 155493 8 673 665 0 750 Gallibacterium anatis 1 species 214906 0 644 1 genus 0 731 644 1 Histophilus somni species 1 Aggregatibacter 3 genus 416916 0 1470 7 588 0 714 species 1 Aggregatibacter actinomycetemcomitans Aggregatibacter aphrophilus 1 species 732 0 875 1 genus Glaesserella 2 998 1 2094023 0 738 0 997 species 1 Glaesserella parasuis 1 genus 933 0 476528 species Bibersteinia trehalosi 1 0 47735 933 genus 6 Haemophilus 1 0 724 22 5641 491 730 0 species 1 [Haemophilus] ducreyi 1 no rank 0 2609962 394 species 1 Haemophilus sp. oral taxon 036 712310 0 394 1525 0 727 species 1 Haemophilus influenzae 1 Haemophilus parainfluenzae species 2571 0 729 638 0 249188 Haemophilus pittmaniae 1 species 1 genus 5 Actinobacillus 2155 31 713 0 0 716 365 species Actinobacillus suis 1 species 1 Actinobacillus pleuropneumoniae 715 0 748 Actinobacillus succinogenes 1 species 0 67854 415 species 1 Actinobacillus equuli 596 718 0 genus 4 Mannheimia 1 8 1820 0 75984 1 Mannheimia varigena species 0 85404 755 488 2645054 0 no rank 1 1 Mannheimia sp. USDA-ARS-USMARC-1261 species 0 1432056 488 species Mannheimia haemolytica 1 0 75985 569 745 0 1503 13 1 3 Pasteurella genus Pasteurella multocida 1 species 0 747 1132 358 754 0 1 Pasteurella dagmatis species 1 Enterobacterales 242 order 187830 805 91347 0 1 family 39 Yersiniaceae 31894 144 1903411 0 2160 123 34037 0 1 4 Rahnella genus no rank 2 1474 0 2635087 1805933 0 895 species 1 Rouxiella sp. ERMR1:05 species 1 Rahnella sp. Y9602 0 741091 579 species Rahnella aquatilis 1 0 34038 563 629 0 7338 115 1 13 Yersinia genus 389 0 28152 species 1 Yersinia kristensenii 467 0 263819 species 1 Yersinia aleksiciae 1 Yersinia frederiksenii species 1463 29484 0 species Yersinia enterocolitica 1 630 0 1651 1 no rank 0 2653513 357 Yersinia sp. FDAARGOS_228 1 species 357 1839800 0 Yersinia intermedia 1 species 411 631 0 325 0 29483 species Yersinia aldovae 1 3 species group 1271 0 1649845 367190 0 312 species Yersinia similis 1 species Yersinia pseudotuberculosis 1 633 0 582 0 632 377 species 1 Yersinia pestis Yersinia rohdei 1 species 0 29485 419 1 Yersinia ruckeri species 470 0 29486 1 2 Gibbsiella genus 929812 0 898 4 1 Gibbsiella quercinecans species 0 929813 894 genus Rouxiella 1 0 1565532 19 12 687 0 1745211 genus 2 Chania 1 0 1639108 675 Chania multitudinisentens 1 species 696 20648 0 613 16 Serratia genus 1 1 Serratia rubidaea species 0 61652 1355 680 28151 0 Serratia proteamaculans 1 species species Serratia marcescens 1 4686 615 0 894 614 0 Serratia liquefaciens 1 species 2170 82996 0 species Serratia plymuthica 1 61651 0 1136 species 1 Serratia ficaria 1972 0 47917 species 1 Serratia fonticola 8 no rank 0 2647522 7059 979 0 1327989 Serratia sp. FS14 1 species Serratia sp. AS13 1 species 634 768493 0 Serratia sp. SCBI 1 species 488142 0 979 1 Serratia sp. MYb239 species 1178 2033438 0 species 1 Serratia sp. SSNIH1 1758196 0 823 770 0 104623 1 Serratia sp. ATCC 39006 species Serratia sp. AS12 1 species 768490 0 634 species Serratia sp. FGI94 1 1062 671990 0 0 543 836 100890 family 117 Enterobacteriaceae 1 genus Shigella 4 1 55 1326 0 620 Shigella flexneri 1 species 0 623 345 species 1 Shigella dysenteriae 0 622 577 1 no rank 2629414 0 349 349 0 1813821 species 1 Shigella sp. PAMC 28760 1 Cronobacter 8 genus 413496 0 6388 164 613 413502 0 1 Cronobacter turicensis species 0 413501 962 species Cronobacter muytjensii 1 species Cronobacter condimenti 1 852 0 1163710 1 Cronobacter universalis species 535744 0 753 1581 0 28141 species 1 Cronobacter sakazakii 680 413503 0 Cronobacter malonaticus 1 species 783 413497 0 species 1 Cronobacter dublinensis genus 14 Citrobacter 1 347 13004 0 544 1 Citrobacter farmeri species 630 0 67824 Citrobacter rodentium 1 species 886 67825 0 1344959 0 7130 species group 7 0 2077147 473 Citrobacter freundii complex sp. CFNIH3 1 species 646 2077148 0 1 Citrobacter freundii complex sp. CFNIH4 species 57706 0 1153 species 1 Citrobacter braakii 0 2077149 563 species 1 Citrobacter freundii complex sp. CFNIH9 546 0 2636 species Citrobacter freundii 1 2066049 0 681 Citrobacter freundii complex sp. CFNIH2 1 species 1 Citrobacter werkmanii species 978 0 67827 species 1 Citrobacter koseri 0 545 963 1096 0 2644389 2 no rank 1702170 0 554 species 1 Citrobacter sp. FDAARGOS_156 1 Citrobacter sp. CFNIH10 species 0 1920110 542 1952 35703 0 Citrobacter amalonaticus 1 species 561 0 9205 54 1 5 Escherichia genus 6929 0 562 1 Escherichia coli species 1 Escherichia albertii species 0 208962 1113 0 564 580 species Escherichia fergusonii 1 1 Escherichia marmotae species 529 1499973 0 1 genus 22 Enterobacter 21043 920 547 0 354276 0 14816 12 species group Enterobacter cloacae 1 species 5699 550 0 species 3 Enterobacter hormaechei 1 0 158836 1690 2698 Enterobacter cloacae complex 'Hoffmann cluster III' 1 subspecies 564 0 1812934 subspecies Enterobacter xiangfangensis 1 444 0 1296536 1 Enterobacter kobei species 499 0 208224 Enterobacter asburiae 1 species 61645 0 2144 Enterobacter ludwigii 1 species 0 299767 556 936 0 69218 1 Enterobacter cancerogenus species species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 675 1812935 0 3 no rank 1609 0 2757714 2027919 0 522 species 1 Enterobacter cloacae complex bacterium 562 0 2077137 species 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 525 0 1915310 Enterobacter cloacae complex sp. ECNIH7 1 species 2608935 0 5307 no rank 9 1827481 0 498 species Enterobacter sp. ODB01 1 Enterobacter sp. R4-368 1 species 0 1166130 821 1 Enterobacter sp. E20 species 416 1560339 0 Enterobacter sp. 638 1 species 399742 0 612 Enterobacter sp. Crenshaw 1 species 386 1977566 0 species Enterobacter sp. FY-07 1 0 1692238 770 1868135 0 402 1 Enterobacter sp. HK169 species species 1 Enterobacter sp. SA187 764 0 1914861 species 1 Enterobacter sp. CRENT-193 638 0 2051905 1 genus 96 0 1048757 96 1048758 0 Candidatus Moranella endobia 1 species no rank 17 0 191675 2652 clade 17 2652 0 84563 genus 1 0 1682492 323 species 1 Candidatus Tachikawaea gelatinosa 323 1410383 0 3 clade 0 146507 680 202 134287 0 species secondary endosymbiont of Heteropsylla cubana 1 1 genus 568987 0 294 1 Candidatus Hamiltonella defensa species 0 138072 294 0 1199245 184 species 1 secondary endosymbiont of Ctenarytaina eucalypti 100 199891 0 clade 1 species 1 secondary endosymbiont of Trabutina mannipara 100 0 1835721 1 Candidatus Hoaglandella 2 genus 61 1 1906659 0 Candidatus Hoaglandella endobia 1 species 60 1778263 0 1040 84564 0 7 clade 203804 0 1040 5 1 genus Candidatus Blochmannia 7 Candidatus Blochmannia chromaiodes 1 species 155 0 251542 0 251535 188 Candidatus Blochmannia vafer 1 species no rank 2 711328 0 373 1505596 0 174 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 199 0 1505597 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species Candidatus Blochmannia floridanus 1 species 0 203907 232 species 1 Candidatus Blochmannia pennsylvanicus 87 101534 0 119 0 1906657 1 genus 0 1778262 119 species 1 Candidatus Doolittlea endobia 0 1906661 139 1 genus species 1 Candidatus Gullanella endobia 0 1070130 139 190 1906660 0 genus 1 Candidatus Mikella endobia 1 species 0 1778264 190 1 genus 833 579 0 species 1 Kluyvera intermedia 833 0 61648 genus Salmonella 3 1 35 5355 0 590 1 Salmonella bongori species 54736 0 840 Salmonella enterica 1 species 4480 28901 0 genus Klebsiella 10 1 0 570 436 19068 2 no rank 0 2608929 2196 1905288 0 1091 1 Klebsiella sp. LTGPAF-6F species 1 Klebsiella sp. M5al species 1105 1934254 0 4778 573 0 1 Klebsiella pneumoniae species 1 Klebsiella aerogenes species 1393 0 548 1 Klebsiella quasivariicola species 963 0 2026240 1 Klebsiella oxytoca species 571 0 3940 2079 1134687 0 species 1 Klebsiella michiganensis 1 Klebsiella quasipneumoniae species 1247 1463165 0 species 1 Klebsiella variicola 2036 244366 0 genus Pluralibacter 3 1 15 3104 0 1330546 species 1 [Enterobacter] lignolyticus 1290 1334193 0 species Pluralibacter gergoviae 1 1799 0 61647 2 Candidatus Riesia genus 1 0 401618 1 149 0 401619 148 1 Candidatus Riesia pediculicola species 2 Shimwellia genus 1 0 1335483 1 694 Shimwellia blattae 1 species 563 0 693 25 2479 0 1330545 Lelliottia 4 genus 1 1120 0 61646 species 1 Lelliottia amnigena 1 Lelliottia jeotgali species 687 1907578 0 647 69220 0 1 Lelliottia nimipressuralis species 0 83654 75 2665 genus 4 Leclercia 1 742 0 83655 species 1 Leclercia adecarboxylata 0 2627398 1848 no rank 2 Leclercia sp. LSNIH3 1 species 860 1920116 0 988 0 1920114 species Leclercia sp. LSNIH1 1 0 160674 27 2849 3 Raoultella genus 1 1 Raoultella ornithinolytica species 2032 0 54291 species Raoultella planticola 1 790 0 575 5 no rank 3253 36866 0 0 693444 558 species 1 Enterobacteriaceae bacterium strain FGI 57 Enterobacteriaceae bacterium ENNIH3 1 species 639 0 1920128 2066051 0 744 species Enterobacteriaceae bacterium ENNIH1 1 Enterobacteriaceae bacterium ENNIH2 1 species 0 1920109 627 Plautia stali symbiont 1 species 891974 0 685 250 0 409304 genus 1 250 0 168169 species 1 Candidatus Ishikawaella capsulata 0 1330547 23 3293 genus 5 Kosakonia 1 283686 0 859 Kosakonia radicincitans 1 species Kosakonia cowanii 1 species 0 208223 911 0 1158459 669 species Kosakonia sacchari 1 497725 0 831 1 Kosakonia oryzae species 0 158483 11 2348 Cedecea 2 genus 1 species 1 Cedecea neteri 158822 0 2337 1 family Erwiniaceae 26 1903409 0 19734 55 3870 32199 0 genus 1 species Buchnera aphidicola 1 9 0 3870 genus 2 Tatumella 1 22 724 0 82986 species Tatumella citrea 1 53336 0 702 0 51228 555 1 genus 555 0 51229 Wigglesworthia glossinidia 1 species 4339 93 551 0 1 genus Erwinia 8 970 0 182337 Erwinia billingiae 1 species 602 2622719 0 no rank 1 Erwinia sp. Ejp617 1 species 0 215689 602 613 0 338565 1 Erwinia tasmaniensis species 1 Erwinia pyrifoliae species 578 79967 0 1 Erwinia amylovora species 0 552 528 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 species 206 0 1922217 749 1619313 0 Erwinia gerundensis 1 species genus 2 2100764 0 2051 0 665913 1136 species 1 Pantoea calida 915 665914 0 species Pantoea gaviniae 1 Pantoea 11 genus 1 0 53335 268 8140 0 1235990 248 species 1 Candidatus Pantoea carbekii species group 1 1312 1654067 0 species Pantoea agglomerans 1 0 549 1312 species 1 Pantoea alhagi 739 1891675 0 534 0 1076550 species Pantoea rwandensis 1 3 no rank 2630326 0 2286 0 592316 594 1 Pantoea sp. At-9b species Pantoea sp. PSNIH1 1 species 0 1484158 637 species 1 Pantoea sp. PSNIH2 0 1484157 1055 Pantoea ananatis 1 species 0 553 807 470934 0 1436 1 Pantoea vagans species species Pantoea stewartii 1 510 66269 0 23 9490 0 1903414 family 21 Morganellaceae 1 6 1743 0 583 3 Proteus genus 1 Proteus mirabilis 1 species 0 584 1071 1 Proteus vulgaris species 666 585 0 1 6 Xenorhabdus genus 626 0 2879 17 species 1 Xenorhabdus hominickii 351679 0 529 351671 0 420 Xenorhabdus doucetiae 1 species 40577 0 475 1 Xenorhabdus poinarii species species Xenorhabdus nematophila 1 628 0 612 1 Xenorhabdus bovienii species 826 40576 0 1 Photorhabdus 4 genus 29487 0 1405 9 0 574560 486 species Photorhabdus temperata 1 448 29488 0 Photorhabdus luminescens 1 species 462 291112 0 Photorhabdus asymbiotica 1 species 1541 16 581 0 1 2 Morganella genus species Morganella morganii 1 1525 0 582 0 637 501 genus 1 501 634113 0 species 1 Arsenophonus symbiont of Lipoptena fortisetosa 1398 8 586 0 1 genus Providencia 4 species Providencia rettgeri 1 430 0 587 species Providencia alcalifaciens 1 126385 0 289 671 588 0 species 1 Providencia stuartii 20 Pectobacteriaceae family 1 0 1903410 57 14724 1 genus 5 Sodalis 1839 63 84565 0 species 1 Sodalis praecaptivus 1239307 0 623 137 0 1929246 Sodalis endosymbiont of Henestaris halophilus 1 species 0 63612 448 Sodalis glossinidius 1 species 1 Candidatus Sodalis pierantonius species 568 1486991 0 5922 159 122277 0 1 6 Pectobacterium genus 0 1905730 845 Pectobacterium parmentieri 1 species species 1 Pectobacterium atrosepticum 654 29471 0 2517 554 0 species 1 Pectobacterium carotovorum species Pectobacterium wasabiae 1 666 55208 0 2042057 0 1081 species Pectobacterium polaris 1 10 741 0 71655 genus 2 Brenneria 1 0 1109412 731 species 1 Brenneria goodwinii genus 6 Dickeya 1 214 6165 0 204037 Dickeya fangzhongdai 1 species 863 1778540 0 204038 0 1079 species Dickeya dadantii 1 1 Dickeya solani species 2000 0 1089444 799 0 204039 Dickeya dianthicola 1 species 0 204042 1210 species 1 Dickeya zeae 1903416 0 667 family 2 genus 2 Pragia 1 0 82984 3 667 82985 0 664 species Pragia fontium 1 1113 451511 0 2 no rank 702 0 1113 25 1 Plesiomonas 2 genus 1088 0 703 Plesiomonas shigelloides 1 species 0 1903412 16 8513 family Hafniaceae 14 1 0 82982 5 507 2 Obesumbacterium genus 1 1 Obesumbacterium proteus species 0 82983 502 290 6368 0 635 genus 8 Edwardsiella 1 1 Edwardsiella hoshinae species 93378 0 605 1821960 0 690 1 Edwardsiella anguillarum species species 1 Edwardsiella piscicida 1263550 0 897 1 Edwardsiella tarda species 0 636 1712 2 no rank 1612 0 2676541 922 0 1578828 Edwardsiella sp. EA181011 1 species Edwardsiella sp. LADL05-105 1 species 1650654 0 690 67780 0 562 Edwardsiella ictaluri 1 species 568 0 1622 44 1 Hafnia 3 genus 1105 0 569 1 Hafnia alvei species 473 0 2621980 1 no rank 473 0 1848580 1 Hafnia sp. CBA7124 species 4 Immundisolibacterales order 1 0 1934945 11 1196 1 family 3 Immundisolibacteraceae 1934946 0 1185 18 1 genus 2 Immundisolibacter 1167 13 1934947 0 1 Immundisolibacter cernigliae species 1810504 0 1154 155903 0 68525 subphylum 197 1 126 Deltaproteobacteria class 28221 0 96564 215 order 18 Desulfobacterales 1 45 8633 0 213118 213121 0 3763 45 1 7 Desulfobulbaceae family 1317 21 893 0 1 genus 2 Desulfobulbus Desulfobulbus sp. ORNL 1 species 1296 1986146 0 739 53318 0 genus 1 species Desulfocapsa sulfexigens 1 0 65555 739 519 109168 0 genus 1 0 84980 519 1 Desulfotalea psychrophila species genus 2 Desulfurivibrio 1 0 427922 16 1143 1127 427923 0 Desulfurivibrio alkaliphilus 1 species 1 family 10 Desulfobacteraceae 4825 24 213119 0 Desulfatibacillum 2 genus 1 0 218207 5 927 922 0 259354 Desulfatibacillum alkenivorans 1 species 28222 0 1253 1 1 genus 2 Desulfobacula 0 28223 1252 Desulfobacula toluolica 1 species genus Desulfococcus 3 1 0 896 14 1773 species Desulfococcus multivorans 1 794 897 0 species 1 Desulfococcus oleovorans 181663 0 965 2295 0 848 2 1 genus 2 Desulfobacterium species Desulfobacterium autotrophicum 1 846 0 2296 0 29 298 34057 Myxococcales 38 order 1 5693 80812 0 8 suborder 49 0 4680 17 1 5 Polyangiaceae family 1 Chondromyces 2 genus 1026 3 50 0 species 1 Chondromyces crocatus 1023 52 0 0 39643 42 3637 2 Sorangium genus 1 0 56 3595 species Sorangium cellulosum 1 1013 8 1055686 0 1 family Sandaracinaceae 3 0 1055688 5 1005 genus 2 Sandaracinus 1 1 Sandaracinus amylolyticus species 1000 927083 0 suborder 26 26295 0 80811 1 family Anaeromyxobacteraceae 5 1524215 0 5142 44 5098 85 161492 0 1 genus 4 Anaeromyxobacter 1 Anaeromyxobacter dehalogenans species 2436 0 161493 2 no rank 2577 2620896 0 species 1 Anaeromyxobacter sp. Fw109-5 1171 0 404589 species 1 Anaeromyxobacter sp. K 1406 0 447217 86 12532 0 31 family 9 Myxococcaceae 1 1 Corallococcus 3 genus 83461 0 4172 68 species 1 Corallococcus coralloides 2337 184914 0 0 35 1767 Myxococcus macrosporus 1 species 0 32 294 8274 genus 5 Myxococcus 1 0 34 1457 species 1 Myxococcus xanthus 1322 0 83455 species Myxococcus stipitatus 1 species Myxococcus hansupus 1 1673 0 1297742 species Myxococcus fulvus 1 33 0 3528 7526 134 39 0 1 family Archangiaceae 9 1 Cystobacter 2 genus 1900 25 42 0 1875 0 43 species 1 Cystobacter fuscus 1 genus Melittangium 2 44 0 1761 15 species Melittangium boletus 1 1746 0 83453 9 2102 0 47 genus 2 Archangium 1 2093 0 48 species Archangium gephyra 1 40 0 1629 11 1 genus 2 Stigmatella 1618 0 41 Stigmatella aurantiaca 1 species 0 1524213 5 1095 3 Vulgatibacteraceae family 1 2 1090 0 1524214 genus Vulgatibacter 2 1 species Vulgatibacter incomptus 1 0 1391653 1088 224462 0 1771 3 suborder 0 224464 8 1771 family 3 Kofleriaceae 1 162027 0 1763 16 1 Haliangium 2 genus 0 80816 1747 species Haliangium ochraceum 1 order 25 Desulfovibrionales 1 259 29083 0 213115 family Desulfovibrionaceae 18 1 0 194924 108 25676 0 2035811 37 3932 genus Pseudodesulfovibrio 4 1 182210 0 1326 species Pseudodesulfovibrio aespoeensis 1 species 1 Pseudodesulfovibrio profundus 0 57320 735 1716143 0 1834 species 1 Pseudodesulfovibrio indicus 1318 0 2582840 genus 1 873 0 1318 species 1 Desulfovibrio africanus 1 genus Lawsonia 2 41707 0 549 2 29546 0 547 1 Lawsonia intracellularis species Desulfovibrio 9 genus 1 0 872 140 18580 species Candidatus Desulfovibrio trichonymphae 1 1725232 0 633 1150 58180 0 species 1 Desulfovibrio alaskensis species Desulfovibrio piger 1 3085 0 901 species Desulfovibrio desulfuricans 1 876 0 3363 species Desulfovibrio fairfieldensis 1 2916 0 44742 Desulfovibrio magneticus 1 species 2188 184917 0 1049 2593640 0 no rank 1 1 Desulfovibrio sp. G11 species 1049 631220 0 Desulfovibrio vulgaris 1 species 881 0 4056 0 2794998 1189 1 genus Desulfovibrio salexigens 1 species 0 880 1189 2 Desulfohalobiaceae family 1 1 484 0 213117 0 45662 483 genus 1 species 1 Desulfohalobium retbaense 483 45663 0 0 213116 24 2664 4 Desulfomicrobiaceae family 1 0 898 9 2640 genus 3 Desulfomicrobium 1 Desulfomicrobium orale 1 species 132132 0 1250 1381 0 899 species Desulfomicrobium baculatum 1 0 453227 11 1534 order 4 Desulfarculales 1 0 453228 4 1523 3 Desulfarculaceae family 1 1519 4 453229 0 1 genus Desulfarculus 2 0 453230 1515 1 Desulfarculus baarsii species 213113 0 1017 21 1 order Desulfurellales 6 996 6 117942 0 1 family 5 Desulfurellaceae 0 84404 10 454 2 Hippea genus 1 Hippea maritima 1 species 84405 0 444 0 33001 5 536 genus Desulfurella 2 1 1 Desulfurella acetivorans species 0 33002 531 Desulfuromonadales 24 order 1 239 19782 0 69541 Desulfuromonadaceae 9 family 1 89 6492 0 213421 0 18 68 3814 Pelobacter 5 genus 1 0 29542 928 species Pelobacter acetylenicus 1 819 0 19 species 1 Pelobacter carbinolicus Pelobacter propionicus 1 species 29543 0 1330 669 0 2620299 1 no rank 669 1842532 0 species 1 Pelobacter sp. SFB93 1 genus 3 Desulfuromonas 2589 31 890 0 1 no rank 0 2614637 1195 species 1 Desulfuromonas sp. DDH964 1195 0 1823759 species Desulfuromonas soudanensis 1 1363 0 1603606 0 213422 71 13051 14 Geobacteraceae family 1 11 Geobacter genus 1 184 12027 0 28231 species Geobacter anodireducens 1 0 1340425 1191 1 Geobacter metallireducens species 28232 0 1069 3031 2627627 0 no rank 2 0 443143 1806 Geobacter sp. M18 1 species 443144 0 1225 1 Geobacter sp. M21 species 0 351604 871 Geobacter uraniireducens 1 species 1 Geobacter pickeringii species 1115 0 345632 225194 0 1182 1 Geobacter bemidjiensis species 986 1203471 0 species 1 Geobacter daltonii species 1 Geobacter sulfurreducens 1153 35554 0 1245 313985 0 Geobacter lovleyi 1 species 1 genus Geoalkalibacter 2 953 8 392332 0 945 483547 0 Geoalkalibacter subterraneus 1 species 0 213462 14 2243 Syntrophobacterales 10 order 1 213465 0 558 4 1 3 Syntrophobacteraceae family 0 29526 3 554 2 Syntrophobacter genus 1 species 1 Syntrophobacter fumaroxidans 551 119484 0 1671 7 213468 0 1 family Syntrophaceae 6 2 448 0 2357 Desulfomonile 2 genus 1 species 1 Desulfomonile tiedjei 2358 0 446 839 0 43773 genus 1 316277 0 839 species Syntrophus aciditrophicus 1 2 Desulfobacca genus 1 0 60892 3 377 374 60893 0 species 1 Desulfobacca acetoxidans 59339 51 29547 0 1 Epsilonproteobacteria 71 class 1 1106 0 235899 order Nautiliales 5 1 395 0 2795691 family 1 1 genus 395 0 269258 1 no rank 395 0 2624044 387092 0 395 1 Nitratiruptor sp. SB155-2 species family 3 Nautiliaceae 1 0 224467 1 710 709 28 191291 0 1 genus Nautilia 2 0 244787 681 species Nautilia profundicola 1 order Campylobacterales 65 1 1090 58182 0 213849 Helicobacteraceae 14 family 1 0 72293 24 6222 12 Helicobacter genus 1 0 209 32 5977 Helicobacter bilis 1 species 476 0 37372 138563 0 532 1 Helicobacter cetorum species 188 0 212 1 Helicobacter acinonychis species 200 214 0 species 1 Helicobacter felis 0 1591088 389 Helicobacter himalayensis 1 species 76936 0 306 Helicobacter typhlonius 1 species species 1 Helicobacter mustelae 274 0 217 1 Helicobacter hepaticus species 32025 0 440 Helicobacter cinaedi 1 species 642 0 213 species 1 Helicobacter pylori 0 210 2332 1 no rank 166 2593540 0 166 222136 0 species Helicobacter sp. MIT 01-6242 1 0 843 221 genus 1 species 1 Wolinella succinogenes 221 0 844 2771472 0 1450 5 family 1 genus Nitratifractor 2 269260 0 413 2 411 269261 0 1 Nitratifractor salsuginis species genus Sulfurovum 3 1 0 265570 5 1037 0 2646778 582 1 no rank species 1 Sulfurovum sp. NBC37-1 0 387093 582 Sulfurovum lithotrophicum 1 species 0 206403 450 41 Campylobacteraceae family 1 3569 47939 0 72294 6973 0 2321108 no rank 5 2321187 0 1755 1 genus 1755 0 1850254 species Arcobacter sp. LPB0137 1 no rank 1 1750 0 2321207 species Arcobacter sp. L 1 944547 0 1750 1 genus Arcobacter 3 3468 23 28196 0 0 28199 1247 species Arcobacter nitrofigilis 1 Arcobacter butzleri 1 species 2198 28197 0 9 Sulfurospirillum genus 1 0 57665 31 3433 260 0 66821 1 Sulfurospirillum multivorans species 366522 0 342 species Sulfurospirillum cavolei 1 44674 0 349 Sulfurospirillum barnesii 1 species 1 Sulfurospirillum halorespirans species 362 0 194424 1 Sulfurospirillum deleyianum species 464 65553 0 3 no rank 1625 2618290 0 0 1986224 437 species 1 Sulfurospirillum sp. SL2-1 1 Sulfurospirillum sp. JPD-1 species 0 220622 546 1 Sulfurospirillum sp. UCH001 species 642 0 1581011 genus Campylobacter 26 1 0 194 420 33964 326 0 28898 Campylobacter helveticus 1 species species Campylobacter lari 1 1948 0 201 497724 0 638 1 Campylobacter subantarcticus species 594 0 260714 species Campylobacter insulaenigrae 1 0 522485 399 species 1 Campylobacter avium species Campylobacter cuniculorum 1 374106 0 498 Campylobacter ureolyticus 1 species 1032 827 0 429 1244531 0 species 1 Campylobacter iguaniorum no rank 4 2593542 0 1938 species Campylobacter sp. RM16704 1 0 1500960 683 1660076 0 329 1 Campylobacter sp. RM12175 species 500 1660073 0 Campylobacter sp. RM6137 1 species species Campylobacter sp. RM8964 1 426 1660074 0 Campylobacter pinnipediorum 1 species 1031 1965231 0 Campylobacter fetus 1 species 196 0 1246 1 Campylobacter jejuni species 4878 197 0 1454 75658 0 Campylobacter lanienae 1 species 1 Campylobacter hominis species 0 76517 664 421 200 0 species 1 Campylobacter curvus 0 206 1336 1 Campylobacter sputorum species 0 198 634 species 1 Campylobacter hyointestinalis 828 199 0 1 Campylobacter concisus species species Campylobacter gracilis 1 824 0 428 Campylobacter coli 1 species 195 0 11355 627 1031542 0 1 Campylobacter volucris species 840 488546 0 species 1 Campylobacter peloridis 0 2771471 1481 family 4 1062 6 202746 0 1 3 Sulfurimonas genus species 1 Sulfurimonas autotrophica 453 0 202747 1 Sulfurimonas denitrificans species 603 0 39766 0 286130 419 genus 1 419 148813 0 species Sulfuricurvum kujiense 1 1807140 0 1716 1 1 Acidithiobacillia 7 class order Acidithiobacillales 6 1 28 1715 0 225057 1 family 5 Acidithiobacillaceae 225058 0 1687 18 16 1669 0 119977 genus 4 Acidithiobacillus 1 species 1 Acidithiobacillus ferrivorans 160808 0 545 1 Acidithiobacillus ferrooxidans species 920 0 492 species 1 Acidithiobacillus caldus 33059 0 616 0 2157 59663 274 superkingdom clade 1 0 1783276 35 1801631 0 35 phylum 1 genus 1 2490204 0 35 35 0 1920749 Candidatus Micrarchaeota archaeon Mia14 1 species clade 55 0 1783275 6093 0 28889 4032 phylum 39 1 4032 0 183924 class 39 Thermoprotei 1 14 Thermoproteales order 1 1 1001 0 2266 0 114378 6 323 family 6 Thermofilaceae 1 3 317 0 2268 5 Thermofilum genus 1 Thermofilum adornatus 1 species 1365176 0 107 Thermofilum uzonense 1 species 0 1550241 56 46 0 2269 1 Thermofilum pendens species 1 Thermofilum carboxyditrophus species 1483572 0 105 1 family 7 Thermoproteaceae 2267 0 677 4 257 0 164450 genus 2 Vulcanisaeta moutnovskia 1 species 109 985052 0 species Vulcanisaeta distributa 1 148 0 164451 genus 1 101 2276 0 Pyrobaculum islandicum 1 species 2277 0 101 0 76886 165 genus 1 1 Caldivirga maquilingensis species 165 0 76887 150 2270 0 2 genus 70 0 2271 species 1 Thermoproteus tenax 1 Thermoproteus uzoniensis species 80 184117 0 447 0 871006 order 3 family 1 371 0 255472 371 0 200414 1 genus 0 200415 371 species Caldisphaera lagunensis 1 76 871007 0 family 2 2 Acidilobus genus 1 0 105850 2 76 0 242703 74 Acidilobus saccharovorans 1 species order 8 1744 2281 0 8 family 1744 118883 0 1 genus 244 12914 0 Acidianus hospitalis 1 species 244 0 563177 3 genus 2284 0 844 2285 0 138 1 Sulfolobus acidocaldarius species 0 43080 452 species 1 Sulfolobus islandicus 1 no rank 0 2641160 254 254 1891280 0 species 1 Sulfolobus sp. A20 398 0 69655 1 genus 0 111955 398 species Sulfolobus tokodaii 1 93 0 41980 2 genus Metallosphaera sedula 1 species 24 0 43687 0 1006005 69 species 1 Metallosphaera cuprina 2100760 0 165 1 genus 165 0 2287 1 Sulfolobus solfataricus species 839 114380 0 order 13 2272 0 581 2 1 Desulfurococcaceae 9 family genus 2 2279 0 273 0 84599 229 species 1 Staphylothermus hellenicus 1 Staphylothermus marinus species 0 2280 44 22 0 477695 genus 1 Thermogladius calderae 1 species 1200300 0 22 94 0 54258 2 genus species Ignicoccus hospitalis 1 0 160233 41 Ignicoccus islandicus 1 species 0 54259 53 genus 1 28 0 54253 0 54254 28 Thermosphaera aggregans 1 species 2273 0 162 genus 2 species 1 Desulfurococcus mucosus 2275 0 55 94694 0 107 Desulfurococcus amylolyticus 1 species 4 Pyrodictiaceae family 1 0 2307 2 258 48 2308 0 1 genus 1273541 0 48 species 1 Pyrodictium delaneyi 98 0 54247 genus 1 species Hyperthermus butylicus 1 54248 0 98 1 genus 0 54251 110 1 Pyrolobus fumarii species 54252 0 110 phylum 1 0 51967 23 1 genus 23 0 498845 species 1 Candidatus Korarchaeum cryptofilum 498846 0 23 1 phylum Thaumarchaeota 15 651137 0 2038 3 5 no rank 651142 0 619 1 215 0 1593364 Candidatus Nitrosopelagicus 2 genus 1 species Candidatus Nitrosopelagicus brevis 1 0 1410606 214 1 Candidatus Nitrosotenuis 3 genus 1825023 0 404 1 1603555 0 210 species Candidatus Nitrosotenuis cloacae 1 species Candidatus Nitrosotenuis sp. AQ6f 1 0 1846278 193 order 5 31932 0 902 1 Nitrosopumilaceae 5 family 338190 0 902 1 1 genus Nitrosopumilus 3 338191 0 621 2 310 1580092 0 species 1 Candidatus Nitrosopumilus adriaticus 309 1229909 0 Candidatus Nitrosopumilus sediminis 1 species 280 1993653 0 genus 1 Candidatus Nitrosomarinus catalina 1 species 280 0 1898749 4 class 1643678 0 514 order 2 Nitrososphaerales 1 0 1033996 3 295 family 1 292 1033997 0 0 497726 292 1 genus 1 Nitrososphaera viennensis species 1034015 0 292 0 1968909 219 order 2 219 1968910 0 2 family 0 498374 2 219 2 Candidatus Nitrosocaldus genus 1 species 1 Candidatus Nitrosocaldus islandicus 0 2045011 217 0 28890 10 53535 Euryarchaeota 218 phylum 1 0 183968 6 5223 class Thermococci 41 1 21 5217 0 2258 order 40 Thermococcales 1 0 2259 10 5196 family 39 Thermococcaceae 1 1 genus 0 83867 168 species 1 Palaeococcus pacificus 168 0 971279 Pyrococcus 8 genus 1 0 2260 1 949 1609559 0 78 species 1 Pyrococcus kukulkanii species 1 Pyrococcus yayanosii 0 1008460 108 Pyrococcus horikoshii 1 species 102 0 53953 species Pyrococcus abyssi 1 29292 0 112 2261 0 70 Pyrococcus furiosus 1 species 478 0 2629106 no rank 2 0 342949 137 species Pyrococcus sp. NA2 1 1183377 0 341 1 Pyrococcus sp. ST04 species genus 29 Thermococcus 1 40 4069 0 2263 173 2264 0 species 1 Thermococcus celer Thermococcus profundus 1 species 49899 0 158 6 no rank 889 2627626 0 212 0 1042877 Thermococcus sp. 4557 1 species 239 246969 0 Thermococcus sp. AM4 1 species Thermococcus sp. P6 1 species 0 122420 51 1 Thermococcus sp. 5-4 species 167 0 2008440 0 1674923 61 species Thermococcus sp. 2319x1 1 Thermococcus sp. EXT12c 1 species 159 0 2016361 Thermococcus siculi 1 species 0 72803 112 species Thermococcus chitonophagus 1 0 54262 86 Thermococcus sibiricus 1 species 172049 0 219 170 163003 0 species 1 Thermococcus cleftensis 128 53952 0 Thermococcus peptonophilus 1 species 1 Thermococcus thioreducens species 165 277988 0 Thermococcus radiotolerans 1 species 126 0 187880 0 54077 130 1 Thermococcus barossii species 0 195522 115 1 Thermococcus nautili species Thermococcus gorgonarius 1 species 0 71997 150 71998 0 95 Thermococcus pacificus 1 species 162 0 582419 1 Thermococcus paralvinellae species 187878 0 78 Thermococcus gammatolerans 1 species 1505907 0 139 Thermococcus eurythermalis 1 species Thermococcus onnurineus 1 species 175 342948 0 144 2265 0 1 Thermococcus litoralis species 108 0 110164 species Thermococcus guaymasensis 1 1 Thermococcus piezophilus species 79 1712654 0 1 Thermococcus kodakarensis species 96 0 311400 species Thermococcus barophilus 1 0 55802 332 19 clade 2374 2283796 0 0 1803510 262 2 clade 2 genus 0 379546 262 379547 0 149 species Aciduliprofundum boonei 1 no rank 1 2633939 0 113 673860 0 113 Aciduliprofundum sp. MAR08-339 1 species 9 2112 0 183967 Thermoplasmata 17 class 1 294 0 1234666 no rank 1 species 1 methanogenic archaeon ISO4-H5 1495144 0 294 order 4 611 0 1235850 2 family 361 1577788 0 0 1080709 251 1 genus 251 1406512 0 1 Candidatus Methanomassiliicoccus intestinalis species genus 1 110 0 1607807 110 0 1577791 species 1 Candidatus Methanoplasma termitum 2 family 250 0 2517203 1 genus Candidatus Methanomethylophilus 2 250 1 1291539 0 249 0 1291540 Candidatus Methanomethylophilus alvus 1 species 11 order 1198 2301 0 1 family 4 Thermoplasmataceae 209 2 46659 0 1 3 Thermoplasma genus 207 1 2302 0 86 50339 0 1 Thermoplasma volcanium species species 1 Thermoplasma acidophilum 120 0 2303 0 1919231 337 no rank 1 1054217 0 337 species 1 Thermoplasmatales archaeon BRNA1 2 family 236 1747776 0 Cuniculiplasma 2 genus 1 0 1747777 3 236 1673428 0 233 species 1 Cuniculiplasma divulgatum 3 family 0 90142 266 0 74968 1 266 Ferroplasma 3 genus 1 species Ferroplasma acidiphilum 1 74969 0 106 species 1 Ferroplasma acidarmanus 159 97393 0 family 1 46630 0 150 genus 1 46631 0 150 Picrophilus torridus 1 species 82076 0 150 8 class 1125 183980 0 Archaeoglobales 8 order 1 0 2231 1 1125 1124 0 2232 family 7 4 genus 0 2233 576 98 0 84156 species Archaeoglobus profundus 1 species Archaeoglobus fulgidus 1 121 0 2234 215 0 1316941 Archaeoglobus sulfaticallidus 1 species species Archaeoglobus veneficus 1 0 58290 142 98 0 54260 genus 1 98 54261 0 species 1 Ferroglobus placidus 2 genus 450 0 190818 276 0 113653 species 1 Geoglobus ahangari species 1 Geoglobus acetivorans 565033 0 174 0 2283794 20682 clade 38 class 14 6090 0 183939 1 order 14 Methanococcales 2182 0 6090 3 0 196117 2234 7 family 331 196119 0 genus 1 species 1 Methanotorris igneus 331 2189 0 6 genus 1903 196118 0 0 83171 374 Methanocaldococcus fervens 1 species 376 0 2641196 1 no rank 376 0 644281 1 Methanocaldococcus sp. FS406-22 species 347 1301915 0 1 Methanocaldococcus bathoardescens species species 1 Methanocaldococcus vulcanius 73913 0 322 194 0 67760 species 1 Methanocaldococcus infernus 290 2190 0 Methanocaldococcus jannaschii 1 species family 6 0 2183 3853 1 Methanococcus 5 genus 3305 5 2184 0 295 0 2188 Methanococcus voltae 1 species 446 0 42879 species 1 Methanococcus aeolicus species Methanococcus vannielii 1 0 2187 380 39152 0 2179 species 1 Methanococcus maripaludis 0 155862 548 genus 1 548 155863 0 1 Methanothermococcus okinawensis species 183925 0 14592 1 1 Methanobacteria 24 class 23 order 0 2158 14591 0 2159 2 14258 family 22 Methanobacteriaceae 1 860 0 2316 1 genus species Methanosphaera stadtmanae 1 860 0 2317 394 23 145260 0 1 5 Methanothermobacter genus 72 145262 0 species Methanothermobacter thermautotrophicus 1 131 0 145263 species 1 Methanothermobacter marburgensis 145261 0 77 Methanothermobacter wolfeii 1 species 2631116 0 91 1 no rank species 1 Methanothermobacter sp. CaT2 866790 0 91 genus Methanobrevibacter 7 1 0 2172 17 10913 1 Methanobrevibacter ruminantium species 768 83816 0 species Methanobrevibacter smithii 1 8092 0 2173 0 294671 623 species 1 Methanobrevibacter olleyae 230361 0 474 species 1 Methanobrevibacter millerae 2 no rank 939 2638681 0 Methanobrevibacter sp. AbM4 1 species 224719 0 507 1 Methanobrevibacter sp. YE315 species 0 1609968 432 0 2160 3 2089 genus 8 Methanobacterium 1 2162 0 349 species 1 Methanobacterium formicicum species 1 Methanobacterium paludis 444 0 868131 172 0 118062 Methanobacterium congolense 1 species 1 Methanobacterium lacus species 611 877455 0 59277 0 155 1 Methanobacterium subterraneum species 2 no rank 2627676 0 355 species 1 Methanobacterium sp. MZ-A1 0 1911685 135 1379702 0 220 species Methanobacterium sp. MB1 1 family 1 333 2178 0 2179 0 333 1 genus species 1 Methanothermus fervidus 333 0 2180 111 clade 24121 0 2290931 29 12584 0 224756 class Methanomicrobia 47 1 1 16 Methanomicrobiales order 2191 0 2740 9 family Methanocorpusculaceae 2 1 0 88404 2 492 genus 1 2192 0 490 1 Methanocorpusculum labreanum species 0 83984 490 6 family 2194 0 1206 45989 0 916 4 1 Methanoculleus 4 genus no rank 1 246 0 2619537 0 86622 246 species 1 Methanoculleus sp. MAB1 0 83986 384 1 Methanoculleus bourgensis species species Methanoculleus marisnigri 1 0 2198 282 1 genus 2 Methanolacinia 290 4 230355 0 0 54120 286 1 Methanolacinia petrolearia species 3 776 0 1198451 family 5 Methanoregulaceae 1 0 475087 291 1 genus species Methanosphaerula palustris 1 0 475088 291 1 Methanoregula 3 genus 482 3 395331 0 Methanoregula boonei 1 species 175 358766 0 1 Methanoregula formicica species 304 882104 0 0 196137 257 family 2 1 genus 2 Methanospirillum 2202 0 257 2 255 2203 0 1 Methanospirillum hungatei species 13 635 0 570264 order 4 Methanocellales 1 0 570265 622 family 3 570266 0 622 1 1 genus 3 Methanocella 1175445 0 422 species 1 Methanocella arvoryzae 199 1175444 0 species Methanocella conradii 1 Methanosarcinales 26 order 1 7 9180 0 94695 481 7 143067 0 1 Methanosaetaceae 3 family 474 2222 0 genus 2 species 1 Methanosaeta harundinacea 0 301375 251 species Methanothrix soehngenii 1 223 2223 0 8692 0 2206 22 family 1 genus 3 Methanohalophilus 2175 0 440 1 1 Methanohalophilus halophilus species 253 2177 0 2176 0 186 species 1 Methanohalophilus mahii 2321 0 433 genus 1 1 Methanohalobium evestigatum species 433 0 2322 1 genus 196136 0 369 Methanosalsum zhilinae 1 species 369 0 39669 0 101191 285 genus 1 species 1 Methanomethylovorans hollandica 285 0 101192 6386 11 2207 0 1 Methanosarcina 13 genus 418008 0 533 species 1 Methanosarcina horonobensis 1591 0 2644672 4 no rank 1434099 0 507 1 Methanosarcina sp. Kolksee species species Methanosarcina sp. WH1 1 308 0 1434102 species Methanosarcina sp. WWM596 1 0 1434103 355 0 1434100 421 1 Methanosarcina sp. MTP4 species species 1 Methanosarcina thermophila 0 2210 309 0 38027 591 species Methanosarcina siciliae 1 2214 0 389 species Methanosarcina acetivorans 1 2209 0 708 1 Methanosarcina mazei species species 1 Methanosarcina lacustris 0 170861 294 2208 0 1485 species Methanosarcina barkeri 1 1 Methanosarcina vacuolata species 475 2215 0 genus 2 434 0 2225 2226 0 258 species Methanococcoides methylutens 1 176 29291 0 Methanococcoides burtonii 1 species genus 1 345 0 2220 345 420950 0 Methanolobus psychrophilus 1 species Halobacteria 64 class 1 0 183963 68 11537 order Haloferacales 18 1 0 1644055 31 3478 1942 2 1644056 0 1 8 Haloferacaceae family 1 2 Halogeometricum genus 268 1 60846 0 60847 0 267 species Halogeometricum borinquense 1 Haloferax 4 genus 1 17 1226 0 2251 1 Haloferax gibbonsii species 530 0 35746 species 1 Haloferax mediterranei 226 2252 0 0 2246 453 Haloferax volcanii 1 species 446 293431 0 1 genus 446 293091 0 species Haloquadratum walsbyi 1 3 1274 0 1963271 family Halorubraceae 8 1 genus 2 Halopenitus 1 14 339 0 1209988 325 1048396 0 species Halopenitus persicus 1 genus Halorubrum 3 1 15 620 0 56688 262 2247 0 1 Halorubrum lacusprofundi species 29284 0 343 species 1 Halorubrum trapanicum 0 1644057 3 312 Salinigranum 2 genus 1 1 Salinigranum rubrum species 309 755307 0 1 no rank 231 0 2678336 0 756883 231 1 halophilic archaeon DL31 species 1 Natrialbales 20 order 3583 24 1644060 0 family 19 Natrialbaceae 1 33 3559 0 1644061 0 353799 1 248 genus Halostagnicola 2 1 1 Halostagnicola larsenii species 247 0 353800 264 63742 0 1 genus species 1 Natrialba magadii 264 0 13769 3 380 0 1269201 genus 2 Salinarchaeum 1 2621923 0 377 1 no rank species Salinarchaeum sp. Harcht-Bsk1 1 377 0 1333523 1 genus 3 Natrinema 88723 0 536 11 no rank 1 221 2622230 0 221 406552 0 Natrinema sp. J7-2 1 species 304 0 69525 1 Natrinema pellirubrum species 0 29287 1 336 genus Natronococcus 2 1 species 1 Natronococcus occultus 335 29288 0 1 genus 162 0 2256 162 44930 0 species 1 Natronobacterium gregoryi 584 10 121871 0 1 Haloterrigena 3 genus Haloterrigena daqingensis 1 species 0 588898 178 0 62320 396 Haloterrigena turkmenica 1 species Halobiforma 2 genus 1 0 203193 2 562 229731 0 560 1 Halobiforma lacisalsi species 454 3 387342 0 1 genus Halopiger 2 species 1 Halopiger xanaduensis 0 387343 451 4408 42 2235 0 1 order Halobacteriales 25 Haloarculaceae 16 family 1 22 2847 0 1963268 2 339 0 203135 genus 2 Halomicrobium 1 57705 0 337 species Halomicrobium mukohataei 1 1 genus Natronomonas 3 413 2 63743 0 Natronomonas moolapensis 1 species 197 0 416273 214 2257 0 species 1 Natronomonas pharaonis 1 genus 5 Haloarcula 2237 0 1206 18 2624677 0 332 1 no rank Haloarcula sp. CBA1115 1 species 332 0 1592728 1 Haloarcula hispanica species 51589 0 311 species 1 Haloarcula taiwanensis 1932004 0 200 1 Haloarcula marismortui species 2238 0 345 0 1073987 2 356 2 Halorientalis genus 1 no rank 1 2648975 0 354 species Halorientalis sp. IM1011 1 1932360 0 354 1 genus 3 Halorhabdus 146825 0 511 2 species 1 Halorhabdus tiamatea 217 0 430914 1 Halorhabdus utahensis species 292 146826 0 1519 6 2236 0 1 family Halobacteriaceae 8 0 1980514 194 genus 1 species Halodesulfurarchaeum formicicum 1 0 1873524 194 1 genus 108 1656823 0 Halanaeroarchaeum sulfurireducens 1 species 108 1604004 0 0 2239 14 924 genus 4 Halobacterium 1 336 0 1407499 1 Halobacterium hubeiense species species Halobacterium salinarum 1 236 2242 0 no rank 1 338 0 2668073 Halobacterium sp. DL1 1 species 0 751944 338 1 genus 287 332246 0 287 0 413810 species Halalkalicoccus jeotgali 1 0 1 name 0