members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 2406 28 4397 2634277 2 1 2618476 14 Bacteria 0 superkingdom 4120 2185674 1783272 1545 clade 0 0 clade 149 1798711 2023825 1117 1 2023825 4 Cyanobacteria 0 phylum 149 56 order 0 1 1917457 Synechococcales 52 1890424 1890438 Leptolyngbyaceae 10 1 631 0 6 family 47251 Leptolyngbya 8 1 621 0 5 genus species 1 0 140 Leptolyngbya boryana 1184 2650499 473 0 no rank 3 0 species 1 111781 Leptolyngbya sp. PCC 7376 252 Leptolyngbya sp. O-77 110 1080068 species 1 0 1752064 111 Leptolyngbya sp. NIES-3755 0 species 1 0 family 3 1890429 1 286 1 Acaryochloridaceae 155977 Acaryochloris 1 285 1 0 2 genus Acaryochloris marina 284 155978 1 species 0 1890426 23 Synechococcaceae 27218 1 0 family 33 0 3 genus 167375 792 1 Cyanobium 26 2627006 356 0 no rank 1 1 species 0 Cyanobium sp. NIES-981 356 1851505 1 species 0 Cyanobium gracile 410 59930 0 genus 2 13034 2 Dactylococcopsis 258 1 species 1 0 256 Dactylococcopsis salina 292566 1 genus 0 90 146785 Thermosynechococcus elongatus 90 146786 1 species 0 0 genus 26 1129 255 Synechococcus 26055 1 32046 Synechococcus elongatus 83 0 1 species 1 species 0 77 Synechococcus lividus 33070 23 no rank 0 25640 2626047 1 species 0 338 Synechococcus sp. WH 7803 32051 Synechococcus sp. WH 8103 1696 29410 1 species 0 Synechococcus sp. CC9605 8042 110662 species 1 0 1 species 0 1193 Synechococcus sp. KORDI-100 1280380 1 species 0 Synechococcus sp. PCC 6312 110 195253 0 1 species 321327 34 Synechococcus sp. JA-3-3Ab 0 species 1 195248 92 Synechococcus sp. PCC 8807 Synechococcus sp. CC9311 218 64471 species 1 0 321332 73 Synechococcus sp. JA-2-3B'a(2-13) 0 1 species Synechococcus sp. PCC 7502 261 1173263 species 1 0 0 species 1 1827144 Synechococcus sp. NIES-970 100 1 species 0 68 Synechococcus sp. PCC 7003 374981 Synechococcus sp. PCC 7002 94 32049 species 1 0 0 1 species 585423 Synechococcus sp. KORDI-49 704 0 species 1 316279 197 Synechococcus sp. CC9902 195498 Synechococcus sp. PCC 7117 101 0 1 species 0 species 1 316278 1382 Synechococcus sp. RCC307 1 species 0 6511 Synechococcus sp. WH 8109 166314 1 species 0 Synechococcus sp. KORDI-52 2309 585425 Synechococcus sp. SynAce01 269 1916956 species 1 0 Synechococcus sp. PCC 73109 87 374982 1 species 0 1350461 Synechococcus sp. UTEX 2973 89 0 1 species 1672 Synechococcus sp. WH 8102 84588 1 species 0 172 2303730 2 family 0 0 genus 2 170610 2 Halomicronema 172 1 0 species 1 1209493 Halomicronema hongdechloris 170 0 family 2 1890436 400 1 2 Pseudanabaenaceae genus 1 0 398 1152 2593292 398 0 1 no rank 0 1 species 82654 Pseudanabaena sp. PCC 7367 398 487 1890428 family 4 0 1 487 Synechocystis 14 1142 4 genus 0 2640012 473 0 no rank 3 1147 203 Synechocystis sp. PCC 6714 0 species 1 0 species 1 2116702 Synechocystis sp. IPPAS B-1465 135 1148 135 Synechocystis sp. PCC 6803 0 species 1 1213 Prochloraceae 7 1888211 1 0 5 family Prochlorococcus 79 1888204 1 1218 4 genus 0 2627481 448297 0 no rank 2 1501269 2830 Prochlorococcus sp. MIT 0801 0 1 species 0 species 1 1501268 445467 Prochlorococcus sp. MIT 0604 0 1 species 1219 1439828 Prochlorococcus marinus class 5 0 4 Gloeobacteria 1 132 307596 4 order 0 128 307595 0 family 4 1890422 1 128 2 Gloeobacteraceae 33071 126 1 1 Gloeobacter 0 genus 3 0 1 species 33072 Gloeobacter violaceus 55 1 species 0 Gloeobacter kilaueensis 70 1416614 0 order 7 52604 1 Pleurocapsales 1586 1 0 2 family 1890500 Hyellaceae 8 1 242 234 44474 genus 1 0 species 1 0 234 Pleurocapsa minor 54308 1890498 1343 1 16 Dermocarpellaceae 0 family 4 102115 1 1327 Stanieria 4 0 3 genus 0 no rank 1 2642663 686 1807358 686 Stanieria sp. NIES-3757 0 1 species 102116 Stanieria cyanosphaera 637 0 1 species 0 3 order 1890505 438 0 3 family 1890528 Chroococcidiopsidaceae 5 1 438 0 genus 2 54298 2 Chroococcidiopsis 433 1 431 Chroococcidiopsis thermalis 54299 species 1 0 no rank 1 0 305 1983111 cyanobacterium endosymbiont of Epithemia turgida 305 718217 species 1 0 92611 1301283 43 subclass 0 0 21 order 1150 85024 1 Oscillatoriales 19 0 family 3 1892255 423 1 2 Gomontiellaceae 2 genus 0 Crinalium 4 1 421 241421 241425 Crinalium epipsammum 417 0 species 1 0 3 family 1892251 Coleofasciculaceae 3 72 1 2 genus 0 1 69 Geitlerinema 4 63132 0 1 no rank 2648775 65 65 Geitlerinema sp. PCC 7407 1173025 1 species 0 family 6 0 3168 1 10 Oscillatoriaceae 1892254 4 Moorea 1 2391 1155738 genus 2 0 0 1 species 1155739 Moorea producens 2387 genus 3 0 767 1 6 Oscillatoria 1158 species 1 0 367 Oscillatoria acuminata 118323 Oscillatoria nigro-viridis 394 482564 species 1 0 1892249 143 1 Cyanothecaceae 20 0 3 family 43988 31 Cyanothece 123 1 0 genus 2 92 2649277 1 no rank 0 Cyanothece sp. PCC 7425 92 395961 species 1 0 5 family 0 Microcoleaceae 18 1 81199 1892252 genus 2 0 228 1 2 Microcoleus 44471 226 2642155 1 no rank 0 1 species 0 Microcoleus sp. PCC 7113 226 1173027 0 2 genus 1205 1 80953 Trichodesmium 1 species 1 0 80952 Trichodesmium erythraeum 1206 1 7587 9 Chroococcales 1118 order 22 0 621 1 Cyanobacteriaceae 1 1890452 3 family 0 102234 620 1 4 Cyanobacterium 0 genus 2 Cyanobacterium aponinum 616 379064 species 1 0 1890449 1311 1 6 Microcystaceae 0 family 4 0 3 genus 1125 Microcystis 11 1 1305 Microcystis aeruginosa 900 1126 1 species 0 1 no rank 0 394 2643300 1967666 Microcystis sp. MC19 394 0 1 species 2504 1 13 Chroococcaceae 1890464 family 6 0 669357 1204 1 5 Geminocystis 0 genus 3 2625037 1199 0 2 no rank 0 1 species 1617448 Geminocystis sp. NIES-3709 567 0 1 species 1615909 632 Geminocystis sp. NIES-3708 1014 268175 1 genus 0 2648896 1014 0 no rank 1 1014 Chondrocystis sp. NIES-4102 2005460 species 1 0 273 102231 1 genus 0 2623012 273 0 1 no rank 0 species 1 1173026 Gloeocapsa sp. PCC 7428 273 8 family 0 3142 1 Aphanothecaceae 6 1890450 704 1453359 1 genus 0 0 species 1 713887 704 Candidatus Atelocyanobacterium thalassa 269 92682 1 no rank 0 269 76023 genus 1 0 1 no rank 0 269 2632878 269 Halothece sp. PCC 7418 65093 species 1 0 883 28070 genus 2 0 species 1 0 457 2546359 1 strain 0 457 Cyanothece sp. PCC 7822 497965 2546356 426 0 1 species strain 1 0 426 Cyanothece sp. PCC 7424 65393 0 genus 2 2546365 722 species 2 0 722 2546366 0 strain 1 41431 Cyanothece sp. PCC 8801 363 395962 Cyanothece sp. PCC 8802 359 0 strain 1 1 genus 0 558 263510 1 species 0 558 2546360 0 1 strain 43989 558 Cyanothece sp. ATCC 51142 11292 1 42 Nostocales 1161 order 33 0 family 8 0 3190 2661849 8 genus 0 Calothrix 28 1 3190 1186 2723 2619626 6 no rank 0 0 species 1 1337936 413 Calothrix sp. 336/3 1954171 490 Calothrix sp. NIES-2098 0 species 1 0 species 1 2005469 627 Calothrix sp. NIES-4071 0 species 1 2005461 Calothrix sp. NIES-4101 507 339 Calothrix sp. NIES-3974 2005462 1 species 0 99598 Calothrix sp. PCC 7507 347 0 1 species 32054 439 Calothrix parietina 0 1 species 0 1 no rank 1219117 344 0 species 1 1940762 344 Nostocales cyanobacterium HT-58-2 1162 Nostocaceae 26 6298 1 0 18 family 264688 1 768 1 Trichormus 0 genus 3 1 species 0 364 Trichormus variabilis 264691 Trichormus azollae 403 1164 1 species 0 genus 4 0 1 1598 9 Anabaena 1163 Anabaena cylindrica 529 1165 1 species 0 2 no rank 0 1060 2619674 Anabaena sp. 90 567 46234 1 species 0 Anabaena sp. WA102 493 1647413 species 1 0 10 genus 0 3906 1 Nostoc 40 1177 Nostoc flagelliforme 535 1306274 species 1 0 2593658 2903 0 no rank 7 1 species 0 Nostoc sp. NIES-3756 527 1751286 386 Nostoc sp. CENA543 1869241 1 species 0 28072 Nostoc sp. PCC 7524 438 0 species 1 Nostoc sp. PCC 7120 357 103690 species 1 0 species 1 0 Nostoc sp. PCC 7107 474 317936 0 species 1 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 363 0 species 1 1618022 358 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1 species 272131 428 Nostoc punctiforme 0 family 3 1892263 5 Hapalosiphonaceae 715 1 genus 2 0 5 Fischerella 710 1 1190 no rank 1 0 705 494603 0 1 species 1752063 Fischerella sp. NIES-3754 705 12 Rivulariaceae 703 1 1185 family 2 0 0 genus 1 373984 691 0 no rank 1 2676603 691 species 1 0 Rivularia sp. PCC 7116 691 373994 0 649 phylum 1239 Firmicutes 28 105925 1 271 84086 1 no rank 0 243899 endosymbiont 'TC1' of Trimyema compressum 271 0 1 species 1737404 Tissierellia 4 1 1557 0 15 class 1737405 Tissierellales 6 1 1400 0 13 order 2042895 1 Gottschalkiaceae 366 1 0 family 3 1505664 1 Gottschalkia 1 365 0 genus 2 1556 Gottschalkia acidurici 364 0 species 1 0 9 family 1570339 1028 1 Peptoniphilaceae 2 0 genus 3 165779 1 314 1 Anaerococcus 1870984 Anaerococcus mediterraneensis 173 0 1 species 140 Anaerococcus prevotii 33034 species 1 0 0 genus 2 162289 153 1 2 Peptoniphilus 2637196 151 0 no rank 1 1 species 0 151 Peptoniphilus sp. ING2-D1G 1912856 1161127 37 0 1 genus 37 Murdochiella vaginalis 1852373 species 1 0 150022 230 0 1 genus 0 1 species 1260 Finegoldia magna 230 543311 292 0 genus 1 Parvimonas micra 292 33033 1 species 0 1 no rank 0 153 1737407 0 genus 1 1582879 153 1852374 153 Ezakiella massiliensis 0 1 species class 3 0 42 1676648 42 1 1 Limnochordales 1676649 order 3 0 41 1676650 family 2 0 41 1 5 Limnochorda 1676651 genus 2 0 Limnochorda pilosa 36 1555112 1 species 0 909932 Negativicutes 5 1 1596 0 26 class 4 order 0 Acidaminococcales 2 84 1 1843488 0 3 family 909930 82 1 Acidaminococcaceae 2 80 904 2 genus 0 187327 Acidaminococcus intestini 31 0 species 1 1 species 0 49 Acidaminococcus fermentans 905 0 order 13 909929 1 999 2 Selenomonadales 4 family 0 Sporomusaceae 1 1 540 1843490 1 539 Pelosinus 3 365348 3 genus 0 Pelosinus fermentans 262 365349 1 species 0 2629460 274 0 no rank 1 274 Pelosinus sp. UFO1 484770 1 species 0 457 1843491 family 8 0 158846 254 1 2 Megamonas 0 genus 2 252 Megamonas hypermegale 158847 species 1 0 0 genus 6 970 8 Selenomonas 203 1 2637378 82 0 3 no rank Selenomonas sp. oral taxon 136 28 713030 1 species 0 1884263 Selenomonas sp. oral taxon 920 30 0 1 species 1 species 0 24 Selenomonas sp. oral taxon 478 712538 0 species 1 69823 Selenomonas sputigena 41 971 72 Selenomonas ruminantium 0 1 species 0 8 order 1843489 Veillonellales 3 508 1 0 7 family 31977 505 1 Veillonellaceae 5 0 genus 1 909928 38 0 species 1 1702287 Negativicoccus massiliensis 38 0 1 genus 906 77 1 species 0 77 Megasphaera elsdenii 907 3 genus 0 235 1 Veillonella 3 29465 species 1 0 164 Veillonella parvula 29466 248315 Veillonella rodentium 68 0 1 species 150 39948 1 genus 0 Dialister pneumosintes 150 39950 1 species 0 186801 1 39948 Clostridia 42 0 180 class order 2 0 184 2770089 1 family 0 124 2770092 0 1 genus 499228 124 0 1 species 499229 Tepidanaerobacter acetatoxydans 124 2770093 60 0 1 family 60 291988 1 genus 0 60 Thermosediminibacter oceani 291990 1 species 0 4 Thermoanaerobacterales 4586 1 68295 order 33 0 186814 1 2065 5 Thermoanaerobacteraceae 0 family 16 0 1 genus 129957 101 1 species 0 Carboxydothermus hydrogenoformans 101 129958 53 42857 2 no rank 0 25 42837 genus 1 0 0 1 species 42838 25 Ammonifex degensii 0 genus 1 44260 28 0 species 1 1525 Moorella thermoacetica 28 0 genus 2 249529 1 Caldanaerobacter 164 1 0 species 1 911092 163 Caldanaerobacter subterraneus 1 genus 0 57 140458 Thermacetogenium phaeum 57 85874 species 1 0 0 genus 9 1754 67 Thermoanaerobacter 1 1685 0 1 species 583357 212 Thermoanaerobacter mathranii 108150 201 Thermoanaerobacter italicus 0 species 1 211 Thermoanaerobacter wiegelii 46354 species 1 0 2325 209 Thermoanaerobacter kivui 0 1 species 415 2636821 no rank 2 0 0 1 species 399726 189 Thermoanaerobacter sp. X514 573062 226 Thermoanaerobacter sp. X513 0 species 1 0 1 species 496866 185 Thermoanaerobacter pseudethanolicus species 1 0 Thermoanaerobacter brockii 185 29323 family 13 0 4 Thermoanaerobacterales Family III. Incertae Sedis 2204 1 543371 3 genus 0 1 605 Thermoanaerobacterium 2 28895 29329 Thermoanaerobacterium xylanolyticum 199 0 1 species species 1 0 404 Thermoanaerobacterium thermosaccharolyticum 1517 35 Caldicellulosiruptor 1595 1 44000 genus 9 0 52765 Caldicellulosiruptor kristjanssonii 168 0 species 1 0 1 species 413888 175 Caldicellulosiruptor hydrothermalis 0 species 1 717609 Caldicellulosiruptor obsidiansis 207 55205 Caldicellulosiruptor owensensis 210 0 species 1 species 1 0 Caldicellulosiruptor lactoaceticus 163 52766 Caldicellulosiruptor bescii 204 31899 1 species 0 species 1 0 216 Caldicellulosiruptor kronotskyensis 413889 44001 217 Caldicellulosiruptor saccharolyticus 0 species 1 0 family 1 543372 71 71 252965 1 genus 0 252966 Mahella australiensis 71 0 species 1 0 family 2 227387 242 0 genus 2 227388 242 1 1 Thermodesulfobium 0 species 1 184064 Thermodesulfobium narugense 241 order 132 0 1 33231 80 Clostridiales 186802 family 2 0 39 31984 2697 Heliobacterium 1 1 39 0 2 genus 35701 Heliobacterium modesticaldum 38 0 species 1 5 no rank 0 334 538999 1 genus 0 52 2717089 species 1 0 Mordavella sp. Marseille-P3756 52 2086584 539000 34 0 family 1 34 73918 1 genus 0 73919 34 Thermaerobacter marianensis 0 1 species 0 2 family 543314 212 143393 108 [Eubacterium] sulci 0 species 1 104 86331 1 genus 0 Mogibacterium diversum 104 114527 1 species 0 0 1 genus 1392389 36 1 species 0 36 Intestinimonas butyriciproducens 1297617 1 2905 9 Lachnospiraceae 186803 family 21 0 0 2 no rank 186928 187 0 1 species 39491 121 [Eubacterium] rectale species 1 0 66 Lachnospiraceae bacterium oral taxon 500 712991 Herbinix 1 1 179 1663717 2 genus 0 species 1 0 Herbinix luporum 178 1679721 genus 3 0 2 Butyrivibrio 1 389 830 0 1 species 185008 Butyrivibrio hungatei 169 1 species 0 Butyrivibrio proteoclasticus 218 43305 356 1506553 3 genus 0 1 species 0 47 Lachnoclostridium phocaeense 1871021 1 species 0 Lachnoclostridium phytofermentans 229 66219 80 2608895 no rank 1 0 1834196 80 Lachnoclostridium sp. YL32 0 species 1 0 1 genus 841 46 1 species 0 Roseburia hominis 46 301301 1 genus 0 560 698776 29360 560 Cellulosilyticum lentocellum 0 1 species 154 207244 genus 1 0 0 1 species 649756 Anaerostipes hadrus 154 genus 1 0 92 2719231 species 1 0 [Clostridium] saccharolyticum 92 84030 1 genus 0 148 2039240 1 species 0 148 Anaerotignum propionicum 28446 79 2719313 1 genus 0 0 species 1 208479 [Clostridium] bolteae 79 genus 1 0 262 2569097 39488 [Eubacterium] hallii 262 0 1 species 0 genus 1 28050 247 39485 247 [Eubacterium] eligens 0 species 1 572511 197 0 genus 2 1 species 0 122 Blautia hansenii 1322 0 no rank 1 2648079 75 species 1 0 75 Blautia sp. YL58 1796616 0 2 family 543349 57 0 2 genus 2733 57 1 Symbiobacterium 1 1 species 0 56 Symbiobacterium thermophilum 2734 1 2401 3 Peptostreptococcaceae 186804 family 8 0 0 no rank 1 1411023 167 Peptostreptococcaceae bacterium oral taxon 929 167 2081703 1 species 0 Clostridioides 1 1 1180 1870884 2 genus 0 1496 Clostridioides difficile 1179 0 species 1 1 genus 0 303 186831 0 1 species 1511 Acetoanaerobium sticklandii 303 0 1 genus 1481960 74 1 species 0 Peptoclostridium acidaminophilum 74 1731 111 44259 genus 1 0 0 1 species 143361 111 Filifactor alocis 0 genus 1 1849828 563 0 species 1 1505 563 Paeniclostridium sordellii 0 family 25 186807 9 Peptococcaceae 1 1876 0 genus 1 51514 122 51515 Dehalobacterium formicoaceticum 122 0 1 species 2282740 117 0 genus 1 102134 Desulfotomaculum gibsoniae 117 0 1 species genus 5 0 2 Desulfotomaculum 1 400 1562 87 Desulfotomaculum ruminis 1564 1 species 0 100 Desulfotomaculum ferrireducens 1833852 species 1 0 0 species 1 59610 Desulfotomaculum reducens 148 0 species 1 1565 63 Desulfotomaculum nigrificans 68 278993 1 genus 0 Thermincola potens 68 863643 species 1 0 471826 1 37 2 Candidatus Desulforudis 0 genus 2 471827 35 Candidatus Desulforudis audaxviator 0 1 species genus 4 0 1 Desulfosporosinus 387 1 79206 79209 Desulfosporosinus meridiei 116 0 species 1 0 species 1 1563 124 Desulfosporosinus orientis 885581 146 Desulfosporosinus acidiphilus 0 species 1 genus 1 0 98 2282742 1 species 0 Desulfotomaculum acetoxidans 98 58138 0 1 genus 51196 69 Syntrophobotulus glycolicus 69 51197 1 species 0 186 56112 3 genus 0 121 2635733 no rank 2 0 0 1 species 1147129 61 Dehalobacter sp. DCA 1131462 60 Dehalobacter sp. CF 0 species 1 65 Dehalobacter restrictus 55583 1 species 0 5 genus 0 1 383 Desulfitobacterium 6 36853 36854 Desulfitobacterium dehalogenans 83 0 1 species species 1 0 Desulfitobacterium metallireducens 93 142877 Desulfitobacterium dichloroeliminans 107 233055 species 1 0 49338 Desulfitobacterium hafniense 94 0 species 1 8 family 0 Ruminococcaceae 7 1 354 541000 34 216851 genus 1 0 species 1 0 34 Faecalibacterium prausnitzii 853 0 no rank 1 552397 37 1 species 0 [Clostridium] cellulosi 37 29343 no rank 1 0 32 2305133 1572656 Ruminococcaceae bacterium CPB6 32 0 species 1 0 1 genus 946234 49 Flavonifractor plautii 49 292800 1 species 0 253238 54 0 genus 1 1 species 0 54 Ethanoligenens harbinense 253239 141 1263 2 genus 0 species 1 0 84 Ruminococcus bicirculans 1160721 57 Ruminococcus albus 1264 species 1 0 0 11 family 2304686 1255 129 2304693 genus 1 0 0 species 1 84032 129 [Clostridium] thermosuccinogenes 1 genus 0 97 2304691 1 species 0 [Clostridium] stercorarium 97 1510 no rank 1 0 24 2305130 Ruminiclostridium sp. KB18 24 1834198 1 species 0 3 genus 0 608 2304692 species 1 0 231 [Clostridium] clariflavum 288965 1677857 Herbivorax saccincola 233 0 species 1 1515 Ruminiclostridium thermocellum 144 0 1 species 150 236752 genus 1 0 236753 150 Fastidiosipila sanguinis 0 species 1 2 genus 0 Ruminiclostridium 4 1 181 1508657 species 1 0 177 [Clostridium] cellulolyticum 1521 genus 2 0 66 1 2 Mageeibacillus 1637257 1 species 0 Mageeibacillus indolicus 64 884684 31979 23394 1 Clostridiaceae 20 0 40 family 390805 266 0 1 genus 1424294 Geosporobacter ferrireducens 266 0 species 1 0 genus 30 1485 21679 1 110 Clostridium species 1 0 509 Clostridium estertheticum 238834 1 species 0 Clostridium baratii 946 1561 0 species 1 1534 598 Clostridium kluyveri Clostridium novyi 498 1542 1 species 0 Clostridium carboxidivorans 640 217159 1 species 0 1519 343 Clostridium tyrobutyricum 0 1 species 508 Clostridium chauvoei 46867 1 species 0 Clostridium acetobutylicum 466 1488 1 species 0 1491 Clostridium botulinum 4842 0 1 species Clostridium saccharoperbutylacetonicum 945 36745 1 species 0 323 Clostridium formicaceticum 1497 species 1 0 Clostridium saccharobutylicum 883 169679 1 species 0 1 species 0 Clostridium cellulovorans 531 1493 1027 Clostridium perfringens 1502 1 species 0 1 species 0 Clostridium autoethanogenum 390 84023 0 species 1 1501 Clostridium pasteurianum 1111 species 1 0 Clostridium butyricum 920 1492 1520 1183 Clostridium beijerinckii 0 1 species 394958 Clostridium taeniosporum 575 0 species 1 Clostridium argentinense 630 29341 1 species 0 0 species 1 1513 Clostridium tetani 616 409 Clostridium ljungdahlii 1538 1 species 0 1216932 574 Clostridium bornimense 0 species 1 1 species 0 Clostridium sporogenes 480 1509 0 species 1 84022 Clostridium aceticum 312 Clostridium cochlearium 432 1494 species 1 0 0 2 no rank 2614128 256 1042156 Clostridium sp. SY8519 34 0 species 1 0 1 species 755731 Clostridium sp. BNL1100 222 1548 Clostridium scatologenes 622 0 1 species 2 Alkaliphilus 1 493 114627 genus 3 0 0 1 species 208226 324 Alkaliphilus metalliredigens Alkaliphilus oremlandii 167 461876 species 1 0 8 Candidatus Arthromitus 1 934 49082 genus 4 0 0 no rank 3 2638829 926 1 species 0 Candidatus Arthromitus sp. SFB-mouse 322 49118 Candidatus Arthromitus sp. SFB-rat-Yit 286 1041504 species 1 0 1508644 318 Candidatus Arthromitus sp. SFB-mouse-NL 0 species 1 genus 1 0 2 Mordavella 1981033 family 1 0 30 990719 30 990721 genus 1 0 0 1 species 1805714 Christensenella massiliensis 30 68298 1 102 1 Syntrophomonadaceae 0 family 3 genus 1 0 67 862 863 67 Syntrophomonas wolfei 0 1 species genus 1 0 34 129001 0 species 1 86170 34 Syntrophothermus lipocalidus 1 family 0 46 216572 0 genus 1 459786 46 species 1 0 46 Oscillibacter valericigenes 351091 4 family 0 358 186806 1 201 Eubacterium 2 1730 2 genus 0 0 1 species 1736 199 Eubacterium limosum Acetobacterium 1 1 157 33951 2 genus 0 33952 Acetobacterium woodii 156 0 species 1 2 order 0 190 485256 0 2 family 485255 190 Natranaerobius 1 1 190 375928 2 genus 0 Natranaerobius thermophilus 189 375929 species 1 0 Halanaerobiales 9 1715 1 53433 10 order 0 5 Halobacteroidaceae 1 566 53434 family 3 0 0 1 genus 28186 214 0 1 species 28187 214 Acetohalobium arabaticum 42417 347 0 1 genus 347 Halobacteroides halobius 42422 species 1 0 972 Halanaerobiaceae 3 1140 1 0 6 family 0 2 genus 32636 1 151 Halothermothrix 4 147 Halothermothrix orenii 31909 1 species 0 Halanaerobium 2 1 986 2330 3 genus 0 species 1 0 530 Halanaerobium praevalens 2331 656519 Halanaerobium hydrogeniformans 454 0 1 species class 416 0 43 Bacilli 1 61957 91061 0 160 order 186826 1 19132 Lactobacillales 66 1446 1 1 Leuconostocaceae 81850 family 17 0 9 genus 0 Leuconostoc 13 1 935 1243 Leuconostoc kimchii 95 136609 species 1 0 1252 128 Leuconostoc carnosum 0 species 1 0 species 1 1244 190 Leuconostoc gelidum 1246 39 Leuconostoc lactis 0 1 species 0 species 1 33964 99 Leuconostoc citreum 0 1 species 255248 41 Leuconostoc garlicum 1 species 0 221 Leuconostoc mesenteroides 1245 109 2685106 no rank 1 0 1 species 0 109 Leuconostoc sp. C2 979982 genus 1 0 107 46254 0 species 1 1247 107 Oenococcus oeni genus 6 0 4 Weissella 403 1 46255 1 species 0 Weissella paramesenteroides 85 1249 Weissella koreensis 112 165096 species 1 0 Weissella cibaria 57 137591 1 species 0 0 species 1 759620 56 Weissella ceti 1631871 Weissella jogaejeotgali 89 0 species 1 81852 4 Enterococcaceae 2485 1 0 family 19 51668 227 0 1 genus 51669 227 Tetragenococcus halophilus 0 1 species 3 genus 0 Vagococcus 5 1 372 2737 species 1 0 191 Vagococcus penaei 633807 species 1 0 Vagococcus teuberi 176 519472 2 Melissococcus 1 221 33969 genus 2 0 33970 Melissococcus plutonius 219 0 1 species genus 12 0 1661 1 18 Enterococcus 1350 76 Enterococcus casseliflavus 37734 1 species 0 0 species 1 1354 166 Enterococcus hirae 288 Enterococcus faecium 1352 1 species 0 1 species 0 Enterococcus mundtii 146 53346 0 1 species 1351 Enterococcus faecalis 302 53345 Enterococcus durans 116 0 species 1 2608891 256 0 3 no rank 2060307 82 Enterococcus sp. FDAARGOS_375 0 species 1 0 species 1 2060306 Enterococcus sp. FDAARGOS_163 86 2057791 Enterococcus sp. CR-Ec1 88 0 species 1 1 species 0 137 Enterococcus wangshanyuanii 2005703 0 species 1 417368 Enterococcus thailandicus 156 263855 195 0 1 no rank 1993866 195 Lactobacillales bacterium 0 1 species family 8 0 1 524 1 Aerococcaceae 186827 7 genus 0 Aerococcus 5 523 1 1375 119206 Aerococcus sanguinicola 30 0 species 1 0 species 1 1377 Aerococcus viridans 88 112 Aerococcus urinae 1376 species 1 0 Aerococcus christensenii 102 87541 species 1 0 species 1 0 70 Aerococcus urinaehominis 128944 Aerococcus urinaeequi 116 51665 1 species 0 1300 11 Streptococcaceae 1 6015 0 family 48 1160 1357 genus 4 0 species 1 0 791 Lactococcus lactis 1358 species 1 0 Lactococcus garvieae 165 1363 Lactococcus piscium 132 1364 1 species 0 1366 Lactococcus raffinolactis 72 0 species 1 1301 4844 1 61 Streptococcus 0 genus 43 0 species 1 1303 151 Streptococcus oralis 197614 Streptococcus pasteurianus 88 0 1 species 1348 Streptococcus parauberis 137 0 species 1 1825069 Streptococcus marmotae 63 0 1 species species 1 0 Streptococcus merionis 52 400065 102684 Streptococcus infantarius 141 0 1 species Streptococcus gordonii 185 1302 1 species 0 0 1 species 1311 250 Streptococcus agalactiae Streptococcus uberis 121 1349 1 species 0 1305 58 Streptococcus sanguinis 0 species 1 1888195 53 Streptococcus himalayensis 0 1 species 0 species 1 1326 Streptococcus acidominimus 62 64 Streptococcus pluranimalium 82348 1 species 0 Streptococcus mutans 188 1309 species 1 0 0 species 1 1304 201 Streptococcus salivarius 178 Streptococcus pneumoniae 1313 species 1 0 671232 433 0 3 species group Streptococcus anginosus 196 1328 species 1 0 160 Streptococcus intermedius 1338 1 species 0 0 1 species 76860 Streptococcus constellatus 77 150055 Streptococcus lutetiensis 79 0 species 1 species group 2 0 251 119603 species 1 0 167 Streptococcus equi 1336 1 species 0 84 Streptococcus dysgalactiae 1334 Streptococcus thermophilus 165 1308 1 species 0 1811193 80 Streptococcus pantholopis 0 1 species 1346 126 Streptococcus iniae 0 species 1 0 1 species 315405 Streptococcus gallolyticus 209 1335 Streptococcus equinus 65 0 1 species species 1 0 67 Streptococcus pseudopneumoniae 257758 0 1 species 45634 58 Streptococcus cristatus species 1 0 244 Streptococcus suis 1307 species 1 0 85 Streptococcus parasanguinis 1318 28037 163 Streptococcus mitis 0 species 1 57 Streptococcus halotolerans 1814128 1 species 0 1314 180 Streptococcus pyogenes 0 species 1 59310 Streptococcus macedonicus 94 0 species 1 7 no rank 0 435 2608887 Streptococcus sp. FDAARGOS_192 57 1839799 species 1 0 0 species 1 712633 Streptococcus sp. oral taxon 431 68 1 species 0 Streptococcus sp. I-G2 45 1156431 49 Streptococcus sp. A12 1759399 species 1 0 42 Streptococcus sp. NPS 308 1902136 species 1 0 0 1 species 1156433 Streptococcus sp. I-P16 34 140 Streptococcus sp. 'group B' 1319 1 species 0 1476 186828 family 8 0 0 genus 5 2747 893 1 1 Carnobacterium Carnobacterium inhibens 175 147709 species 1 0 0 1 species 2751 Carnobacterium maltaromaticum 389 328 257487 no rank 2 0 species 1 0 Carnobacterium sp. 17-4 190 208596 1564681 Carnobacterium sp. CP1 138 0 1 species genus 2 0 295 1470540 1 no rank 0 152 2621505 1903686 Jeotgalibaca sp. PTS2502 152 0 species 1 708126 Jeotgalibaca dankookensis 143 0 species 1 288 191769 1 genus 0 0 1 no rank 2632303 288 288 Marinilactibacillus sp. 15R 1911586 species 1 0 33958 6925 1 Lactobacillaceae 9 0 58 family 0 2 genus 2767889 213 species 1 0 Lactobacillus backii 129 375175 1610 Lactobacillus coryniformis 84 0 1 species 0 3 genus 2759736 348 Lactobacillus casei 123 1582 species 1 0 Lactobacillus paracasei 100 1597 species 1 0 1 species 0 Lactobacillus rhamnosus 125 47715 0 4 genus 2767887 663 0 species 1 1624 Lactobacillus salivarius 464 Lactobacillus acidipiscis 84 89059 species 1 0 0 species 1 1623 48 Lactobacillus ruminis Lactobacillus agilis 67 1601 1 species 0 genus 2 0 279 2767885 28038 99 Lactobacillus curvatus 0 1 species 180 Lactobacillus sakei 1599 species 1 0 80 2767877 genus 1 0 80 Lactobacillus kunkeei 148814 1 species 0 1578 2168 1 45 Lactobacillus 0 genus 16 1 species 0 Lactobacillus gasseri 286 1596 4 no rank 0 356 2620435 2099788 Lactobacillus sp. CBA3605 92 0 species 1 species 1 0 150 Lactobacillus sp. wkB8 1545702 0 1 species 2108362 50 Lactobacillus sp. D1501 1 species 0 64 Lactobacillus sp. CBA3606 2099789 species 1 0 152 Lactobacillus delbrueckii 1584 1 species 0 Lactobacillus gallinarum 91 52242 94 Lactobacillus amylolyticus 83683 species 1 0 82 Lactobacillus kefiranofaciens 267818 species 1 0 1587 Lactobacillus helveticus 217 0 1 species 1 species 0 Lactobacillus acidophilus 136 1579 1 species 0 Lactobacillus amylovorus 153 1604 0 1 species 1600 85 Lactobacillus acetotolerans species 1 0 Lactobacillus jensenii 142 109790 species 1 0 329 Lactobacillus johnsonii 33959 202 2767893 3 genus 0 Lactobacillus parabuchneri 41 152331 species 1 0 1138822 Lactobacillus curieae 88 0 1 species species 1 0 73 Lactobacillus buchneri 1581 1253 3 Pediococcus 1 624 0 genus 6 1255 Pediococcus pentosaceus 195 0 species 1 114090 Pediococcus inopinatus 86 0 species 1 1670797 86 0 1 species group 1254 Pediococcus acidilactici 86 0 species 1 187452 Pediococcus claussenii 128 0 species 1 126 Pediococcus damnosus 51663 species 1 0 0 3 genus 2767886 164 species 1 0 96 Lactobacillus brevis 1580 species 1 0 51 Lactobacillus koreensis 637971 1 species 0 17 Lactobacillus zymae 267363 1 genus 0 76 2767876 0 species 1 1603 76 Lactobacillus amylophilus 2742598 390 0 3 genus 1613 45 Lactobacillus fermentum 0 species 1 species 1 0 49 Lactobacillus mucosae 97478 0 species 1 1598 296 Lactobacillus reuteri 2767879 793 0 6 genus 1 species 0 165 Lactobacillus crustorum 392416 Lactobacillus allii 156 1847728 1 species 0 0 species 1 1602 Lactobacillus alimentarius 140 1007676 Lactobacillus ginsenosidimutans 139 0 species 1 0 species 1 1612 Lactobacillus farciminis 96 Lactobacillus heilongjiangensis 97 1074467 species 1 0 2767890 109 0 1 genus 0 species 1 1193095 Lactobacillus hokkaidonensis 109 2 genus 0 267 2767881 0 1 species 53444 163 Lactobacillus lindneri Lactobacillus sanfranciscensis 104 1625 1 species 0 1 genus 0 75 2767892 75 Lactobacillus paracollinoides 240427 1 species 0 0 genus 3 2767842 465 1 species 0 357 Lactobacillus plantarum 1590 Lactobacillus paraplantarum 56 60520 1 species 0 52 Lactobacillus pentosus 1589 species 1 0 0 255 order 1385 42782 1 Bacillales 87 0 45 family 186822 Paenibacillaceae 6 1 5495 44249 24 Paenibacillus 4681 1 0 genus 36 149 Paenibacillus odorifer 189426 species 1 0 0 1 species 61624 112 Paenibacillus mucilaginosus 185978 1620 0 no rank 13 Paenibacillus sp. BIHB4019 131 1870819 1 species 0 0 species 1 481743 51 Paenibacillus sp. Y412MC10 150 Paenibacillus sp. FSL H7-0737 1536775 species 1 0 0 1 species 1536770 Paenibacillus sp. FSL R5-0345 227 82 Paenibacillus sp. lzh-N1 2069255 species 1 0 0 species 1 1695218 47 Paenibacillus sp. 32O-W 1 species 0 Paenibacillus sp. FSL H7-0357 94 1536774 Paenibacillus sp. FSL R5-0912 86 1536771 1 species 0 0 species 1 1536769 Paenibacillus sp. FSL P4-0081 129 1536773 Paenibacillus sp. FSL R7-0331 60 0 1 species 1 species 0 84 Paenibacillus sp. FSL R7-0273 1536772 species 1 0 Paenibacillus sp. IHBB 10380 428 1566358 species 1 0 51 Paenibacillus sp. JDR-2 324057 Paenibacillus yonginensis 55 1462996 species 1 0 95 Paenibacillus xylanexedens 528191 species 1 0 133 Paenibacillus crassostreae 1763538 species 1 0 175 Paenibacillus graminis 189425 species 1 0 0 1 species 365617 42 Paenibacillus sabinae 1126833 Paenibacillus beijingensis 77 0 1 species Paenibacillus swuensis 74 1178515 1 species 0 Paenibacillus larvae 169 1464 species 1 0 1 species 0 Paenibacillus borealis 88 160799 1 species 0 86 Paenibacillus kribbensis 172713 0 1 species 59893 Paenibacillus peoriae 103 0 1 species 1406 698 Paenibacillus polymyxa 0 1 species 1616788 Paenibacillus bovis 164 169760 Paenibacillus stellifer 49 0 species 1 84 2044880 1 species group 0 84 Paenibacillus riograndensis 483937 species 1 0 414771 Paenibacillus donghaensis 313 0 species 1 0 species 1 44251 158 Paenibacillus durus 0 1 species 159743 Paenibacillus terrae 79 0 species 1 1870820 72 Paenibacillus ihbetae 0 1 species 162209 62 Paenibacillus naphthalenovorans 0 2 no rank 85151 183 183 55079 2 genus 0 species 1 0 96 Aneurinibacillus soli 1500254 2642329 87 0 1 no rank 0 species 1 1450761 87 Aneurinibacillus sp. XH2 0 2 genus 76632 49 1 Thermobacillus 2 377615 47 Thermobacillus composti 0 species 1 1 576 1 Brevibacillus 55080 genus 4 0 118 Brevibacillus formosus 54913 species 1 0 Brevibacillus laterosporus 310 1465 1 species 0 1393 Brevibacillus brevis 147 0 species 1 539002 473 0 9 no rank 291 539742 7 no rank 0 33986 Exiguobacterium 5 1 291 0 7 genus 2644629 186 0 no rank 4 1849031 Exiguobacterium sp. U13-1 62 0 1 species species 1 0 Exiguobacterium sp. ZWU0009 61 1224749 34 Exiguobacterium sp. MH3 1399115 species 1 0 29 Exiguobacterium sp. AT1b 360911 species 1 0 1 species 0 51 Exiguobacterium sibiricum 332410 49 Exiguobacterium antarcticum 132920 1 species 0 182 539738 2 no rank 0 2 genus 0 182 1 Gemella 3 1378 179 2624949 no rank 1 0 0 1 species 1785995 179 Gemella sp. oral taxon 928 0 9 family 186820 Listeriaceae 5 1 1463 6 genus 0 1276 1 Listeria 11 1637 species 1 0 156 Listeria seeligeri 1640 1643 213 Listeria welshimeri 0 species 1 1642 Listeria innocua 153 0 1 species 0 1 species 1639 Listeria monocytogenes 477 1638 266 Listeria ivanovii 0 1 species genus 2 0 3 Brochothrix 1 182 2755 179 Brochothrix thermosphacta 2756 1 species 0 family 27 0 3120 1 8 Planococcaceae 186818 genus 5 0 8 Sporosarcina 1 795 1569 0 no rank 2 2647733 167 1930546 Sporosarcina sp. P37 79 0 1 species 0 species 1 1930764 Sporosarcina sp. P33 88 1571 388 Sporosarcina ureae 0 species 1 1 species 0 232 Sporosarcina psychrophila 1476 648800 6 Solibacillus 1 430 0 genus 3 183 2637870 no rank 1 0 1 species 0 183 Solibacillus sp. R5-41 2048654 Solibacillus silvestris 241 76853 species 1 0 genus 2 0 182 1 1 Rummeliibacillus 648802 1 species 0 181 Rummeliibacillus stabekisii 241244 2 genus 0 1 208 Kurthia 5 1649 203 2644826 1 no rank 0 species 1 0 Kurthia sp. 11kri321 203 1750719 157226 Jeotgalibacillus 3 1 137 0 2 genus 1508404 Jeotgalibacillus malaysiensis 134 0 1 species 12 genus 0 1360 1 Planococcus 12 1372 161360 Planococcus antarcticus 128 0 1 species species 1 0 143 Planococcus faecalis 1598147 species 1 0 183 Planococcus donghaensis 414778 species 1 0 Planococcus rifietoensis 55 200991 0 1 species 1374 135 Planococcus kocurii 1215089 Planococcus halocryophilus 200 0 species 1 29 Planococcus plakortidis 1038856 species 1 0 0 no rank 2 2662419 213 2058136 Planococcus sp. MB-3u-03 71 0 1 species 0 species 1 1526927 142 Planococcus sp. PAMC 21323 192421 Planococcus maritimus 94 0 species 1 Planococcus sp. L10.15 168 1302659 1 species 0 Alicyclobacillaceae 1 304 1 186823 7 family 0 112 1129704 2 genus 0 0 1 species 2055160 54 Kyrpidia sp. EA-1 1 species 0 Kyrpidia tusciae 58 33943 genus 2 0 59 1 1 Alicyclobacillus 29330 Alicyclobacillus acidocaldarius 58 405212 1 species 0 132 432330 genus 2 0 0 1 species 1214604 Tumebacillus algifaecis 39 93 Tumebacillus avium 1903704 1 species 0 family 2 0 1 Sporolactobacillaceae 1 38 186821 0 1 no rank 663587 37 [Bacillus] selenitireducens 37 85683 species 1 0 1 9084 Staphylococcaceae 16 90964 40 family 0 0 1 genus 45669 43 species 1 0 43 Salinicoccus halodurans 407035 0 genus 33 1279 8367 1 74 Staphylococcus 0 species 1 283734 Staphylococcus pseudintermedius 130 Staphylococcus agnetis 174 985762 species 1 0 1 species 0 Staphylococcus carnosus 176 1281 Staphylococcus hominis 289 1290 1 species 0 0 species 1 29382 Staphylococcus cohnii 224 276 Staphylococcus haemolyticus 1283 species 1 0 0 1 species 1282 487 Staphylococcus epidermidis 0 1 species 1284 127 Staphylococcus hyicus 45972 Staphylococcus pasteuri 567 0 species 1 Staphylococcus simiae 275 308354 species 1 0 284 Staphylococcus argenteus 985002 species 1 0 29388 258 Staphylococcus capitis 0 1 species 99 Staphylococcus pettenkoferi 170573 1 species 0 species 1 0 Staphylococcus warneri 254 1292 1286 135 Staphylococcus simulans 0 1 species species 1 0 850 Staphylococcus aureus 1280 species 1 0 Staphylococcus lutrae 129 155085 1 species 0 230 Staphylococcus kloosii 29384 231 91994 1 no rank 0 0 species 1 1715860 231 Staphylococcus sp. AntiMn-1 0 species 1 643214 Staphylococcus stepanovicii 257 236 Staphylococcus nepalensis 214473 species 1 0 0 1 species 28035 222 Staphylococcus lugdunensis 1294 95 Staphylococcus muscae 0 1 species 46127 Staphylococcus felis 168 0 1 species 440 Staphylococcus xylosus 1288 species 1 0 0 species 1 29385 248 Staphylococcus saprophyticus 0 1 species 70258 130 Staphylococcus piscifermentans 0 1 species 61015 236 Staphylococcus succinus 1 species 0 Staphylococcus equorum 346 246432 70255 222 Staphylococcus condimenti 0 species 1 1295 205 Staphylococcus schleiferi 0 species 1 293 Staphylococcus sciuri 1296 species 1 0 0 1 genus 2005363 183 0 species 1 1849491 Auricoccus indicus 183 0 4 genus 69965 1 475 Macrococcus 1 0 species 1 1855823 107 Macrococcus canis 69966 161 Macrococcus caseolyticus 0 species 1 206 2619255 1 no rank 0 Macrococcus sp. IME1552 206 1898474 1 species 0 186817 27 Bacillaceae 22675 1 0 family 113 0 genus 7 84406 1390 1 10 Virgibacillus 1482 203 Virgibacillus halodenitrificans 0 1 species 0 1 species 1473 261 Virgibacillus pantothenticus 245 Virgibacillus necropolis 163877 species 1 0 461 2620237 no rank 2 0 1911587 241 Virgibacillus sp. 6R 0 1 species species 1 0 Virgibacillus sp. SK37 220 403957 1 species 0 Virgibacillus phasianinus 210 2017483 0 genus 2 2675230 450 665099 Bacillus oceanisediminis 163 0 species 1 1 species 0 Bacillus kochii 287 859143 genus 1 0 57 351195 0 1 species 1230341 Salimicrobium jeotgali 57 1335 1 Lysinibacillus 15 400634 5 genus 0 28031 Lysinibacillus fusiformis 246 0 species 1 Lysinibacillus sphaericus 619 1421 1 species 0 2636778 209 0 1 no rank 0 1 species 2072025 209 Lysinibacillus sp. YS11 1 species 0 246 Lysinibacillus varians 1145276 508 2675229 2 genus 0 0 1 species 1478 392 Bacillus simplex 116 Bacillus muralis 264697 species 1 0 175304 94 1 Lentibacillus 1 0 2 genus 1472767 Lentibacillus amyloliquefaciens 93 0 1 species 251 45667 2 genus 0 402384 129 Halobacillus mangrovi 0 species 1 species 1 0 Halobacillus halophilus 122 1570 459532 75 0 1 genus Terribacillus aidingensis 75 586416 1 species 0 319 1329200 2 genus 0 0 species 1 255247 161 Fictibacillus arsenicus 1 species 0 158 Fictibacillus phosphorivorans 1221500 2675234 1011 0 5 genus species 1 0 275 Bacillus krulwichiae 199441 86665 108 Bacillus halodurans 0 1 species species 1 0 Bacillus clausii 201 79880 0 species 1 79885 218 Bacillus pseudofirmus species 1 0 Bacillus lehensis 209 300825 29331 202 0 1 genus Amphibacillus xylanus 202 1449 species 1 0 genus 1 0 490 182709 490 Oceanobacillus iheyensis 182710 1 species 0 1 genus 0 160 1055323 33936 160 Aeribacillus pallidus 0 species 1 0 6 genus 150247 1 846 Anoxybacillus 14 149 Anoxybacillus amylolyticus 294699 species 1 0 198467 172 Anoxybacillus gonensis 0 1 species 278 2639704 no rank 2 0 0 1 species 1490052 Anoxybacillus sp. B2M1 143 1 species 0 Anoxybacillus sp. B7M1 135 1490057 species 1 0 Anoxybacillus flavithermus 233 33934 1 genus 0 150 1906945 0 species 1 1426 150 Parageobacillus thermoglucosidasius 1 984 46 Geobacillus 129337 genus 15 0 4 species group 0 283 1505648 1 species 0 45 Geobacillus lituanicus 169283 1 species 0 Geobacillus thermoleovorans 141 33941 species 1 0 43 Geobacillus thermocatenulatus 33938 1462 54 Geobacillus kaustophilus 0 1 species 33940 87 Geobacillus thermodenitrificans 0 species 1 1 species 0 51 Geobacillus subterraneus 129338 2642459 401 0 6 no rank 0 species 1 691437 Geobacillus sp. C56-T3 76 species 1 0 Geobacillus sp. GHH01 17 1233873 species 1 0 93 Geobacillus sp. Y4.1MC1 581103 18 Geobacillus sp. Y412MC61 544556 1 species 0 0 1 species 550542 16 Geobacillus sp. Y412MC52 471223 Geobacillus sp. WCH70 181 0 1 species 1422 81 Geobacillus stearothermophilus 0 species 1 1 species 0 35 Geobacillus genomosp. 3 1921421 58 genus 0 14326 1 Bacillus 268 1386 species group 9 0 1506 653685 586 Bacillus subtilis 1423 species 1 0 species 1 0 20 Bacillus vallismortis 72361 1648923 Bacillus paralicheniformis 90 0 1 species species 1 0 112 Bacillus licheniformis 1402 1938374 443 0 3 species subgroup 186 Bacillus amyloliquefaciens 1390 1 species 0 Bacillus siamensis 40 659243 species 1 0 Bacillus velezensis 217 492670 species 1 0 1 species 0 90 Bacillus sonorensis 119858 1452 165 Bacillus atrophaeus 0 1 species 820 Bacillus megaterium 1404 species 1 0 0 species 1 1664069 141 Bacillus glycinifermentans 1408 532 Bacillus pumilus 0 species 1 0 species 1 79881 42 Bacillus gibsonii 0 1 species 33932 377 Bacillus cohnii 19 no rank 0 1322 185979 98228 76 Bacillus sp. OxB-1 0 species 1 1 species 0 Bacillus sp. H15-1 51 1856406 186 Bacillus sp. X1(2014) 1565991 species 1 0 1774743 Bacillus sp. SDLI1 42 0 1 species Bacillus sp. (in: Bacteria) 30 1409 1 species 0 1837130 Bacillus sp. FJAT-14266 72 0 species 1 0 species 1 756828 112 Bacillus sp. WP8 0 1 species 1570330 16 Bacillus sp. BH072 21 Bacillus sp. 275 1941347 species 1 0 species 1 0 Bacillus sp. SJ-10 21 563169 0 1 species 2026248 Bacillus sp. 1s-1 52 species 1 0 Bacillus sp. Pc3 21 1446792 2009331 Bacillus sp. MD-5 41 0 1 species species 1 0 Bacillus sp. JS 47 1127744 1628753 28 Bacillus sp. LM 4-2 0 1 species 0 species 1 666686 278 Bacillus sp. 1NLA3E 0 1 species 2049935 19 Bacillus sp. Lzh-5 0 species 1 1827146 Bacillus sp. IHB B 7164 181 1574141 Bacillus sp. YP1 28 0 1 species 204 Bacillus aryabhattai 412384 1 species 0 Bacillus endophyticus 320 135735 1 species 0 Bacillus smithii 100 1479 species 1 0 1 species 0 Bacillus flexus 237 86664 species 1 0 Bacillus coagulans 115 1398 Bacillus horikoshii 154 79883 species 1 0 0 species group 10 86661 6845 species 1 0 Bacillus thuringiensis 2258 1428 0 1 species 1405 Bacillus mycoides 929 658666 Bacillus bombysepticus 197 0 1 species 0 no rank 3 2750818 548 1 species 0 Bacillus sp. HBCD-sjtu 144 2053832 1839798 247 Bacillus sp. FDAARGOS_235 0 1 species 1 species 0 Bacillus sp. ABP14 157 1892404 1 species 0 177 Bacillus toyonensis 155322 0 1 species 1396 2287 Bacillus cereus 1392 Bacillus anthracis 242 0 1 species 0 species 1 580165 207 Bacillus cytotoxicus species 1 0 Bacillus cellulosilyticus 271 1413 0 species 1 632773 72 Bacillus beveridgei 1 species 0 115 Bacillus xiamenensis 1178537 1792192 137 0 1 species group 293387 Bacillus altitudinis 137 0 1 species 0 1 species 1471 166 Bacillus methanolicus 324767 83 Bacillus infantis 0 1 species 0 1 species 561879 249 Bacillus safensis 1547283 Bacillus weihaiensis 250 0 species 1 0 2 family 186824 43 2 genus 0 43 1 Novibacillus 2 1677050 1471761 41 Novibacillus thermophilus 0 species 1 0 class 6 526524 499 499 526525 6 order 0 1 499 Erysipelotrichaceae 1 128827 6 family 0 0 1 genus 191303 162 1 no rank 0 162 2638206 1712675 Turicibacter sp. H121 162 0 species 1 1647 235 0 2 genus 124 Erysipelothrix rhusiopathiae 1648 1 species 0 0 1 species 1514105 111 Erysipelothrix larvae 1 genus 0 30 1729679 1702221 30 Faecalibaculum rodentium 0 1 species 71 544447 no rank 1 0 1 species 0 Erysipelotrichaceae bacterium I46 71 1834207 0 no rank 1 33974 27 0 1 genus 1930845 27 27 Ndongobacter massiliensis 1871025 species 1 0 200795 963 0 28 phylum 0 2 class 1382928 143 143 1382929 2 order 0 1382930 1 143 1 Ardenticatenaceae 0 family 2 0 1 genus 1988031 142 0 species 1 1806508 Candidatus Promineofilum breve 142 class 5 0 161 1 2 Anaerolineae 292625 4 order 0 159 1 Anaerolineales 1 292629 0 family 3 292628 158 genus 1 0 57 233189 0 species 1 167964 57 Anaerolinea thermophila 1324991 27 0 no rank 1 1889813 Anaerolineaceae bacterium oral taxon 439 27 0 1 species 2019482 74 0 1 genus 1 species 0 Brevefilum fermentans 74 1986204 0 6 class 301297 194 3 genus 0 1 65 Dehalogenimonas 5 670486 30 Dehalogenimonas lykanthroporepellens 552810 species 1 0 1839801 Dehalogenimonas formicexedens 30 0 species 1 1202465 129 0 3 order 0 family 3 1202464 129 3 genus 0 129 1 Dehalococcoides 3 61434 0 no rank 1 237581 29 0 1 species 1522671 Dehalococcoides sp. UCH007 29 0 species 1 61435 Dehalococcoides mccartyi 97 1 97 2 Thermomicrobia 189775 class 4 0 68 85000 2 subclass 0 2 order 0 68 85001 255728 68 0 suborder 2 family 2 0 68 85002 68 1 2 Sphaerobacter 2056 genus 2 0 1 species 0 66 Sphaerobacter thermophilus 2057 order 1 0 27 189776 0 family 1 189777 27 499 27 0 genus 1 0 species 1 500 27 Thermomicrobium roseum 2 class 0 79 475962 0 2 order 475963 79 family 2 0 79 475964 79 1 Caldilinea 1 233191 2 genus 0 78 Caldilinea aerophila 133453 species 1 0 class 9 0 1 Chloroflexia 1 289 32061 0 order 8 32064 288 1 3 Chloroflexales 1508594 183 0 suborder 4 183 1106 family 4 0 Chloroflexus 2 1 183 1107 4 genus 0 2 species 0 Chloroflexus aurantiacus 46 1 92 1108 480224 Chloroflexus sp. Y-400-fl 46 0 1 strain species 1 0 89 Chloroflexus aggregans 152260 1508595 102 0 3 suborder 0 3 family 1508635 102 0 3 genus 120961 102 1 Roseiflexus 1 0 1 species 120962 61 Roseiflexus castenholzii 2609473 40 0 1 no rank species 1 0 40 Roseiflexus sp. RS-1 357808 14379 544448 phylum 100 0 2799557 199 0 1 no rank genus 1 0 199 1912503 2624196 199 0 no rank 1 199 Candidatus Izimaplasma sp. HR1 1541959 1 species 0 1 13711 Mollicutes 25 31969 97 class 0 Acholeplasmatales 1 1310 1 186329 13 order 0 1309 1 Acholeplasmataceae 12 2146 12 family 0 623 1 Candidatus Phytoplasma 8 33926 6 genus 0 85630 121 0 1 species group 0 species 1 37692 Candidatus Phytoplasma mali 121 3 species group 0 398 85620 species 1 0 134 Onion yellows phytoplasma 100379 Aster yellows witches'-broom phytoplasma 121 229545 species 1 0 202462 Maize bushy stunt phytoplasma 143 0 species 1 species group 1 0 96 85632 96 Candidatus Phytoplasma australiense 59748 species 1 0 2147 1 Acholeplasma 674 1 0 genus 5 species 1 0 227 Acholeplasma palmae 38986 2148 Acholeplasma laidlawii 155 0 species 1 0 species 1 61635 109 Acholeplasma brassicae 0 1 species 35623 Acholeplasma oculi 182 0 order 39 186328 17 Entomoplasmatales 1 5970 0 14 family 33925 Entomoplasmataceae 10 1 1797 0 5 genus 46238 1 520 Entomoplasma 4 Entomoplasma luminosum 127 214888 species 1 0 215578 172 Entomoplasma somnilux 0 1 species 74700 Entomoplasma freundtii 60 0 species 1 0 1 species 81459 Entomoplasma melaleucae 157 0 8 genus 46239 1 1267 Mesoplasma 27 155 Mesoplasma syrphidae 225999 1 species 0 0 species 1 2149 Mesoplasma entomophilum 162 324078 183 Mesoplasma coleopterae 0 1 species Mesoplasma lactucae 80 138853 1 species 0 173 Mesoplasma chauliocola 216427 1 species 0 0 species 1 2151 305 Mesoplasma florum 0 1 species 219745 Mesoplasma tabanidae 182 2131 4156 1 Spiroplasmataceae 12 0 24 family 0 genus 23 2132 1 4144 47 Spiroplasma 0 species 1 216942 272 Spiroplasma litorale 0 1 species 216936 248 Spiroplasma diminutum 1 species 0 237 Spiroplasma culicicola 216935 1 species 0 Spiroplasma chrysopicola 127 216933 0 1 species 216937 265 Spiroplasma floricola Spiroplasma clarkii 188 2139 species 1 0 2136 146 Spiroplasma monobiae 0 1 species 184 Spiroplasma kunkelii 47834 species 1 0 1 species 0 104 Spiroplasma mirum 2144 1 species 0 Spiroplasma eriocheiris 116 315358 Spiroplasma citri 172 2133 species 1 0 0 species 1 362837 274 Spiroplasma cantharicola Spiroplasma helicoides 206 216938 1 species 0 Spiroplasma apis 160 2137 1 species 0 216944 146 Spiroplasma sabaudiense 0 species 1 2 no rank 0 238 2637901 0 species 1 1898044 119 Spiroplasma sp. TU-14 0 species 1 1914410 Spiroplasma sp. NBRC 100390 119 species 1 0 268 Spiroplasma turonicum 216946 216945 Spiroplasma syrphidicola 150 0 1 species Spiroplasma corruscae 214 216934 1 species 0 1114980 Spiroplasma atrichopogonis 104 0 1 species species 1 0 Spiroplasma taiwanense 278 2145 6406 1 Mycoplasmatales 24 2085 44 order 0 Mycoplasmataceae 18 6382 1 2092 43 family 0 2767358 1916 0 12 genus 0 species 1 2115 Mycoplasma fermentans 162 species 1 0 98 Mycoplasma synoviae 2109 1 species 0 Mycoplasma cynos 201 171284 29553 112 Mycoplasma bovirhinis 0 1 species 0 1 species 2112 Mycoplasma bovigenitalium 130 species 1 0 172 Mycoplasma canis 29555 48003 Mycoplasma pullorum 143 0 species 1 119 Mycoplasma californicum 2113 1 species 0 species 1 0 Mycoplasma bovis 343 28903 0 1 species 2107 Mycoplasma pulmonis 143 0 1 species 2110 178 Mycoplasma agalactiae 2094 115 Mycoplasma arginini 0 1 species genus 3 0 1 Ureaplasma 338 1 2129 Ureaplasma urealyticum 158 2130 species 1 0 134821 179 Ureaplasma parvum 0 1 species Mycoplasma 28 1 4110 2093 27 genus 0 0 species 1 171632 Mycoplasma ovis 36 0 1 species 2099 264 Mycoplasma hyopneumoniae species 1 0 Mycoplasma gallisepticum 118 2096 0 species 1 2100 Mycoplasma hyorhinis 161 species 1 0 Mycoplasma flocculare 94 2128 species 1 0 229 Mycoplasma penetrans 28227 127 2683645 no rank 1 0 127 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 species 1 0 136241 86 Mycoplasma haemocanis 0 1 species 0 species 1 86660 114 Mycoplasma dispar 29554 Mycoplasma canadense 140 0 species 1 95 Mycoplasma genitalium 2097 1 species 0 Mycoplasma suis 59 57372 1 species 0 species 1 0 Mycoplasma parvum 90 984991 1 species 0 Mycoplasma wenyonii 45 65123 92 Mycoplasma arthritidis 2111 1 species 0 Mycoplasma crocodyli 169 50052 species 1 0 2123 Mycoplasma putrefaciens 186 0 species 1 51365 206 Mycoplasma yeatsii 0 1 species 1 species 0 180 Mycoplasma haemofelis 29501 977 656088 species group 3 0 1 species 0 284 Mycoplasma capricolum 2095 2102 451 Mycoplasma mycoides 0 species 1 1 species 0 Mycoplasma leachii 242 2105 45362 122 Mycoplasma bovoculi 0 1 species 0 species 1 2118 Mycoplasma mobile 243 0 1 species 2098 Mycoplasma hominis 218 31 Mycoplasma pneumoniae 2104 1 species 0 713063 469 0 2 no rank 0 1 species 1911684 254 Tenericutes bacterium MO-XQ 1 species 0 Tenericutes bacterium MZ-XQ 215 1911683 1297 1182 0 phylum 31 11 Deinococci 1 1182 188787 class 31 0 68933 2 Thermales 1 523 0 order 15 0 family 14 188786 5 Thermaceae 521 1 56 208447 1 genus 0 1 species 0 56 Oceanithermus profundus 187137 Meiothermus 3 114 1 65551 3 genus 0 Meiothermus silvanus 45 52022 species 1 0 1 species 0 Meiothermus ruber 66 277 0 1 genus 186191 31 1 species 0 Marinithermus hydrothermalis 31 186192 5 Thermus 315 1 270 genus 8 0 34 Thermus scotoductus 37636 species 1 0 species 1 0 30 Thermus brockianus 56956 26 2619321 no rank 1 0 1111069 Thermus sp. CCB_US3_UF1 26 0 1 species 32 Thermus parvatiensis 456163 1 species 0 271 Thermus aquaticus 43 0 1 species 0 1 species 56957 Thermus oshimai 43 274 102 Thermus thermophilus 0 1 species 118964 586 1 Deinococcales 10 0 14 order family 13 0 576 183710 Deinococcus 17 576 1 1298 13 genus 0 1182568 38 Deinococcus puniceus 0 1 species 432329 60 Deinococcus peraridilitoris 0 species 1 55148 Deinococcus proteolyticus 79 0 species 1 Deinococcus gobiensis 70 502394 species 1 0 Deinococcus geothermalis 34 68909 species 1 0 1182571 32 Deinococcus swuensis 0 1 species 0 species 1 309887 Deinococcus maricopensis 40 1299 Deinococcus radiodurans 48 0 1 species 2623546 52 0 1 no rank 2080419 52 Deinococcus sp. NW-56 0 1 species species 1 0 40 Deinococcus soli Cha et al. 2016 1309411 1 species 0 40 Deinococcus deserti 310783 26 Deinococcus actinosclerus 1768108 1 species 0 2762275 62 0 order 1 332247 62 0 family 1 332248 62 0 1 genus 0 species 1 332249 Truepera radiovictrix 62 2 no rank 0 60 1859062 2 genus 0 60 1 Thermobaculum 1 262406 species 1 0 Thermobaculum terrenum 59 166501 201174 1 39302 13 Actinobacteria 0 phylum 585 class 28 0 746 84998 84999 1 265 Coriobacteriales 6 0 13 order 0 7 family 1643824 Atopobiaceae 1 1 191 1 genus 0 Atopobium 1 1380 Olsenella 1 1 121 133925 4 genus 0 0 species 1 133926 Olsenella uli 36 46 2638792 no rank 1 0 species 1 0 Olsenella sp. oral taxon 807 46 712411 species 1 0 38 Olsenella sp. Marseille-P2300 1805478 2767353 68 0 1 genus 1 species 0 68 Atopobium parvulum 1382 0 family 5 84107 68 0 1 no rank 84113 30 0 1 species 1531429 30 Coriobacteriaceae bacterium 68-1-3 102106 1 17 Collinsella 2 0 2 genus 74426 15 Collinsella aerofaciens 0 species 1 0 genus 2 33870 1 Coriobacterium 21 1 33871 Coriobacterium glomerans 20 0 species 1 15 order 0 481 1 Eggerthellales 3 1643822 1643826 478 1 4 Eggerthellaceae 0 family 14 genus 1 0 34 79603 Denitrobacterium detoxificans 34 79604 1 species 0 Adlercreutzia 1 1 40 447020 2 genus 0 39 Adlercreutzia equolifaciens 446660 1 species 0 genus 3 0 107 1 4 Gordonibacter 644652 species 1 0 46 Gordonibacter massiliensis 1841863 1335613 57 Gordonibacter urolithinfaciens 0 1 species genus 3 0 96 1 2 Eggerthella 84111 0 species 1 84112 Eggerthella lenta 66 no rank 1 0 28 2648737 Eggerthella sp. YY7918 28 502558 1 species 0 0 1 genus 1981050 108 Phoenicibacter massiliensis 108 1944646 1 species 0 52 84162 1 genus 0 52 Cryptobacterium curtum 84163 1 species 0 0 genus 2 84108 1 37 1 Slackia 84110 Slackia heliotrinireducens 36 0 species 1 113 84995 5 class 0 8 Rubrobacterales 113 1 84996 order 5 0 Rubrobacteraceae 3 1 105 84997 4 family 0 42255 102 1 Rubrobacter 2 0 3 genus 0 1 species 49319 Rubrobacter xylanophilus 53 0 1 species 42256 47 Rubrobacter radiotolerans class 5 0 331 84992 0 order 5 84993 331 1 4 Acidimicrobiales family 2 0 254 2448023 2 genus 0 Ilumatobacter 2 1 254 682522 1 species 0 252 Ilumatobacter coccineus 467094 2 family 0 73 84994 0 genus 2 53634 73 1 6 Acidimicrobium 53635 67 Acidimicrobium ferrooxidans 0 1 species 428 1497346 class 4 0 0 4 order 588673 Solirubrobacterales 6 1 428 320583 1 422 Conexibacteraceae 2 0 3 family 191494 1 Conexibacter 420 1 0 genus 2 Conexibacter woesei 419 191495 species 1 0 538 class 0 1 37328 Actinobacteria 162 1760 1643684 77 0 order 2 85031 77 0 2 family 53460 1 77 3 Nakamurella 0 genus 2 0 species 1 53461 Nakamurella multipartita 74 85010 1 2948 Pseudonocardiales 5 0 35 order 22 Pseudonocardiaceae 1 2943 2070 family 34 0 genus 1 0 114 2071 species 1 0 114 Saccharothrix espanaensis 103731 65496 Actinoalloteichus 14 431 1 0 6 genus 0 species 1 340345 Actinoalloteichus hymeniacidonis 60 2644606 168 0 2 no rank 1 species 0 Actinoalloteichus sp. GBA129-24 87 1612551 0 1 species 2072503 Actinoalloteichus sp. AHMU CJ021 81 Actinoalloteichus hoggarensis 82 1470176 1 species 0 107 Actinoalloteichus sp. ADI127-7 1612552 species 1 0 0 3 genus 40566 239 1 Actinosynnema 6 Actinosynnema mirum 126 40567 species 1 0 1 species 0 Actinosynnema pretiosum 107 42197 1 genus 0 86 674734 0 1 no rank 2636053 86 86 Alloactinosynnema sp. L-07 1653480 1 species 0 0 1 genus 1851 55 species 1 0 Saccharomonospora viridis 55 1852 1 723 Pseudonocardia 10 1847 8 genus 0 6 no rank 0 610 2619320 species 1 0 92 Pseudonocardia sp. HH130630-07 1690815 0 1 species 445576 105 Pseudonocardia sp. AL041005-10 0 1 species 1688404 Pseudonocardia sp. EC080610-09 119 Pseudonocardia sp. EC080625-04 98 1096868 1 species 0 0 1 species 1641402 86 Pseudonocardia sp. HH130629-09 Pseudonocardia sp. EC080619-01 110 1096856 1 species 0 0 species 1 240495 Pseudonocardia dioxanivorans 103 1835 102 0 genus 1 1836 Saccharopolyspora erythraea 102 0 species 1 1 790 9 Amycolatopsis 1813 genus 7 0 1814 111 Amycolatopsis methanolica 0 1 species 31958 Amycolatopsis orientalis 184 0 1 species 0 no rank 2 2618356 206 0 1 species 1896961 Amycolatopsis sp. AA4 97 0 species 1 1911175 109 Amycolatopsis sp. BJA-103 0 species 1 33910 130 Amycolatopsis mediterranei Amycolatopsis japonica 150 208439 species 1 0 genus 2 0 1 Kutzneria 102 1 43356 0 species 1 43357 101 Kutzneria albida 142577 72 0 1 genus 1 species 0 Prauserella marina 72 530584 0 1 genus 2029 90 1 species 0 90 Kibdelosporangium phytohabitans 860235 0 1 genus 165301 117 1586287 117 Lentzea guizhouensis 0 1 species 3 order 0 112 85014 0 3 family 85034 112 1 Glycomycetaceae 9 2 genus 0 103 1 Stackebrandtia 1 283810 species 1 0 Stackebrandtia nassauensis 102 283811 120 52018 1 no rank 0 0 1 species 1650658 120 Actinobacteria bacterium IMCC26256 4 order 0 Catenulisporales 1 1 465 414714 0 family 3 414877 3 Catenulisporaceae 1 464 414878 1 461 Catenulispora 2 0 2 genus 0 species 1 304895 459 Catenulispora acidiphila Actinomycetales 2 1 505 2037 16 order 0 1 503 Actinomycetaceae 8 2049 15 family 0 0 genus 1 1653174 34 1 species 0 34 Actinotignum schaalii 59505 1069494 37 0 genus 1 species 1 0 Trueperella pyogenes 37 1661 2050 60 0 1 genus 0 1 species 2051 Mobiluncus curtisii 60 2529408 14 0 genus 1 0 species 1 52773 Actinomyces meyeri 14 0 genus 1 28263 32 species 1 0 32 Arcanobacterium haemolyticum 28264 1 318 Actinomyces 12 1654 9 genus 0 species 1 0 Actinomyces pacaensis 26 1852377 0 1 species 1912795 22 Actinomyces sp. VUL4_3 58 Actinomyces radicidentis 111015 species 1 0 39 Actinomyces oris 544580 species 1 0 2609248 128 0 3 no rank Actinomyces sp. oral taxon 414 43 712122 1 species 0 46 Actinomyces sp. Chiba101 1851395 1 species 0 2081702 39 Actinomyces sp. oral taxon 897 0 1 species 1960083 Actinomyces gaoshouyii 33 0 species 1 13 order 0 Streptosporangiales 13 757 1 85012 0 family 2 2012 84 2019 Thermomonospora 2 1 84 0 2 genus 0 species 1 2020 Thermomonospora curvata 82 83676 1 307 1 Nocardiopsaceae 0 family 6 genus 1 0 36 83677 species 1 0 36 Thermobifida fusca 2021 genus 4 0 270 1 4 Nocardiopsis 2013 species 1 0 78 Nocardiopsis gilva 280236 120 Nocardiopsis dassonvillei 2014 1 species 0 species 1 0 68 Nocardiopsis alba 53437 4 family 0 353 1 Streptosporangiaceae 1 2004 genus 2 0 1 Nonomuraea 1 215 83681 214 2593643 1 no rank 0 species 1 0 214 Nonomuraea sp. ATCC 55076 1909395 2000 137 0 1 genus 2001 Streptosporangium roseum 137 0 1 species 85009 10 Propionibacteriales 1 1231 0 order 30 0 family 17 31957 587 1 9 Propionibacteriaceae 29404 63 0 1 genus 1 species 0 Microlunatus phosphovorus 63 29405 2801844 43 0 1 genus 0 1 species 1750 Pseudopropionibacterium propionicum 43 0 3 genus 1912216 95 Cutibacterium acnes 28 1747 1 species 0 33011 Cutibacterium granulosum 37 0 1 species 1 species 0 Cutibacterium avidum 30 33010 72763 5 Tessaracoccus 1 221 0 genus 5 0 species 1 1610493 50 Tessaracoccus flavus species 1 0 46 Tessaracoccus flavescens 399497 2635419 55 0 no rank 1 0 species 1 1909732 55 Tessaracoccus sp. T2.5-30 1332264 Tessaracoccus aquimaris 65 0 species 1 1743 1 72 Propionibacterium 2 0 3 genus 0 1 species 1744 61 Propionibacterium freudenreichii 0 1 no rank 2608905 9 671223 Propionibacterium sp. oral taxon 193 9 0 species 1 0 1 genus 203133 17 2633994 17 0 no rank 1 1 species 0 17 Propionimicrobium sp. Marseille-P3275 1871034 1912215 67 1 1 Acidipropionibacterium 0 genus 2 species 1 0 Acidipropionibacterium acidipropionici 66 1748 12 family 0 634 1 Nocardioidaceae 13 85015 0 2 genus 2040 Aeromicrobium 1 1 95 species 1 0 Aeromicrobium erythreum 94 2041 182639 116 1 2 Kribbella 0 genus 2 1 species 0 Kribbella flavida 114 182640 0 1 genus 116071 50 75385 50 Micropruina glycogenica 0 species 1 2044 Pimelobacter 1 105 1 0 2 genus species 1 0 104 Pimelobacter simplex 2045 genus 4 0 9 Nocardioides 1 255 1839 2045452 61 Nocardioides sp. 78 0 species 1 83 2615069 no rank 1 0 83 Nocardioides sp. JS614 196162 1 species 0 0 species 1 450734 102 Nocardioides dokdonensis 0 order 2 622452 93 2 family 0 Kineosporiaceae 3 93 1 83778 0 genus 1 33981 90 species 1 0 Kineococcus radiotolerans 90 131568 7 order 0 283 1 Geodermatophilales 1 1643682 85030 Geodermatophilaceae 15 282 1 0 6 family 90 1 Blastococcus 2 38501 2 genus 0 88 Blastococcus saxobsidens 138336 species 1 0 2 genus 0 Modestobacter 2 1 89 88138 Modestobacter marinus 87 477641 species 1 0 1860 88 0 genus 1 1861 88 Geodermatophilus obscurus 0 1 species 0 118 order 85006 5553 1 Micrococcales 38 74 125316 family 1 0 1 genus 0 74 84756 84757 74 Beutenbergia cavernae 0 1 species family 5 0 1 Dermacoccaceae 167 1 145357 Kytococcus 2 42 1 57499 2 genus 0 1 species 0 Kytococcus sedentarius 40 1276 1 genus 0 69 745364 0 1 species 571913 69 Luteipulveratus mongoliensis 1 genus 0 55 57495 Dermacoccus nishinomiyaensis 55 1274 1 species 0 577468 40 0 no rank 1 40 2038 1 genus 0 Tropheryma whipplei 40 2039 1 species 0 family 7 0 243 85021 53457 63 1 3 Janibacter 0 genus 2 1 species 0 Janibacter indicus 60 857417 64 1 2 Arsenicicoccus 267408 genus 2 0 1 no rank 0 62 2663846 Arsenicicoccus sp. oral taxon 190 62 1658671 1 species 0 0 genus 1 265976 60 0 1 species 1758689 Serinicoccus sp. JLT9 60 0 genus 2 53357 1 56 1 Intrasporangium 53358 Intrasporangium calvum 55 0 1 species 85017 Promicromonosporaceae 1 1 377 0 8 family 1 Xylanimonas 93 1 186188 genus 2 0 Xylanimonas cellulosilytica 92 186189 1 species 0 2 genus 0 120 157920 Cellulosimicrobium cellulans 67 1710 species 1 0 2624466 53 0 no rank 1 species 1 0 Cellulosimicrobium sp. TH-20 53 1980001 0 genus 3 254250 1 163 2 Isoptericola 1 species 0 Isoptericola dokdonensis 94 372663 139208 Isoptericola variabilis 67 0 species 1 0 34 family 1268 1485 1 Micrococcaceae 10 genus 1 0 66 596707 species 1 0 66 Sinomonas atrocyanea 37927 1742993 1 Pseudarthrobacter 1 136 0 genus 4 0 species 1 85085 Pseudarthrobacter chlorophenolicus 30 44 Pseudarthrobacter sulfonivorans 121292 1 species 0 61 Pseudarthrobacter phenanthrenivorans 361575 species 1 0 1 genus 0 31 1269 1270 31 Micrococcus luteus 0 species 1 1868332 54 0 genus 1 556325 54 Neomicrococcus aestuarii 0 1 species genus 4 0 4 Kocuria 1 163 57493 0 1 species 446860 63 Kocuria flava 47 Kocuria rhizophila 72000 species 1 0 0 species 1 71999 Kocuria palustris 49 1645 24 0 genus 1 1 species 0 Renibacterium salmoninarum 24 1646 32207 1 81 1 Rothia 0 genus 3 species 1 0 Rothia mucilaginosa 45 43675 2047 Rothia dentocariosa 35 0 species 1 0 genus 1 1742989 66 0 species 1 256701 66 Glutamicibacter arilaitensis 1663 783 1 11 Arthrobacter 0 genus 15 656366 Arthrobacter alpinus 99 0 1 species 235627 618 0 no rank 12 24 Arthrobacter sp. Rue61a 1118963 1 species 0 0 1 species 290399 Arthrobacter sp. FB24 33 0 species 1 1690248 Arthrobacter sp. LS16 48 Arthrobacter sp. PGP41 127 2079227 species 1 0 1849032 62 Arthrobacter sp. U41 0 1 species 0 1 species 1494608 56 Arthrobacter sp. PAMC 25486 Arthrobacter sp. QXT-31 49 1357915 species 1 0 1771959 Arthrobacter sp. ATCC 21022 31 0 species 1 0 species 1 1704044 Arthrobacter sp. ERGS1:01 75 0 species 1 1806905 33 Arthrobacter sp. ZXY-2 41 Arthrobacter sp. YN 2020486 species 1 0 0 1 species 1652545 39 Arthrobacter sp. YC-RL1 species 1 0 Arthrobacter crystallopoietes 55 37928 2078575 38 0 1 genus 38 Arthrobacter sp. IHBB 11108 1618207 1 species 0 0 genus 1 1742992 33 0 1 species 43663 Paenarthrobacter aurescens 33 40 85018 2 family 0 0 2 genus 1862 Dermatophilus 1 40 1 1863 39 Dermatophilus congolensis 0 1 species 16 85022 family 1 0 16 43673 1 genus 0 1 species 0 Jonesia denitrificans 16 43674 85023 17 Microbacteriaceae 2158 1 0 family 40 33882 737 1 Microbacterium 16 0 14 genus 462 2609290 8 no rank 0 species 1 0 Microbacterium sp. No. 7 81 1714373 0 1 species 367477 Microbacterium sp. XT11 52 1916917 Microbacterium sp. 1.5R 56 0 1 species Microbacterium sp. PAMC 28756 48 1795053 species 1 0 0 species 1 1938334 54 Microbacterium sp. TPU 3598 0 1 species 1696072 65 Microbacterium sp. CGR1 1 species 0 Microbacterium sp. BH-3-3-3 66 1906742 2103230 Microbacterium sp. str. 'China' 40 0 1 species 1 species 0 Microbacterium aurum 46 36805 species 1 0 Microbacterium testaceum 53 2033 162426 61 Microbacterium hominis 0 1 species 41 Microbacterium chocolatum 84292 species 1 0 Microbacterium paludicola 58 300019 1 species 0 0 3 genus 2034 166 42 Curtobacterium pusillum 69373 species 1 0 257496 124 0 2 no rank species 1 0 59 Curtobacterium sp. BH-2-1-1 1905847 0 species 1 1561023 Curtobacterium sp. MR_MD2014 65 0 genus 1 1434032 27 Pontimonas salivibrio 27 1159327 species 1 0 518733 83 0 genus 1 1 species 0 83 Microterricola viridarii 412690 75 33877 1 genus 0 453304 75 Agromyces aureus 0 1 species 1573 Clavibacter 9 273 1 0 6 genus 28447 264 1 48 Clavibacter michiganensis 0 species 5 subspecies 1 0 39 Clavibacter nebraskensis 31963 Clavibacter insidiosus 49 33014 1 subspecies 0 1 subspecies 0 55 Clavibacter capsici 1874630 73 Clavibacter sepedonicus 31964 subspecies 1 0 0 genus 2 110932 1 131 2 Leifsonia species 1 0 Leifsonia xyli 129 1575 447237 218 0 1 genus 218 2626248 1 no rank 0 1795630 218 Frondihabitans sp. PAMC 28766 0 species 1 69578 103 0 2 genus 2649013 46 0 1 no rank species 1 0 46 Cryobacterium sp. LW097 1978566 1 species 0 57 Cryobacterium arcticum 670052 60 1759331 1 genus 0 1619308 Cnuibacter physcomitrellae 60 0 species 1 0 no rank 3 1655488 102 clade 3 0 102 1655489 4 Rhodoluna 1 102 529883 genus 3 0 1 species 0 39 Candidatus Rhodoluna planktonica 535712 Rhodoluna lacicola 59 529884 species 1 0 0 genus 1 337004 52 279828 Microcella alkaliphila 52 0 species 1 0 1 genus 1705353 31 0 species 1 708131 31 Aurantimicrobium minutum 83 33886 genus 2 0 1 species 0 Rathayibacter toxicus 34 145458 49 Rathayibacter tritici 33888 species 1 0 85020 Dermabacteraceae 4 485 1 0 10 family 1 genus 0 19 36739 1630135 Dermabacter vaginalis 19 0 species 1 43668 1 424 Brachybacterium 6 0 6 genus 2017485 42 Brachybacterium sp. VR2415 0 species 1 1 no rank 0 56 2623841 0 species 1 1903186 Brachybacterium sp. P6-10-X1 56 0 species 1 1331682 46 Brachybacterium ginsengisoli 43669 Brachybacterium faecium 57 0 1 species 0 1 species 2017484 217 Brachybacterium sp. VM2412 0 genus 2 472568 3 Devriesea 1 38 472569 Devriesea agamarum 35 0 1 species 0 family 1 145360 76 76 60919 1 genus 0 0 1 species 60920 Sanguibacter keddieii 76 0 family 2 85019 1 Brevibacteriaceae 1 94 1696 93 0 1 genus 1703 93 Brevibacterium linens 0 1 species 260 85016 5 family 0 1707 260 1 Cellulomonas 2 0 5 genus 0 species 1 11 Cellulomonas gilvus 58 no rank 1 0 59 2620175 Cellulomonas sp. PSBB021 59 2003551 species 1 0 1708 75 Cellulomonas fimi 0 1 species 66 Cellulomonas flavigena 1711 species 1 0 622450 52 0 2 order 622451 52 1 Actinopolysporaceae 1 0 2 family 1 genus 0 51 1849 414996 Actinopolyspora erythraea 51 0 species 1 0 6 order 85013 Frankiales 6 716 1 710 1 Frankiaceae 1 74712 5 family 0 709 1854 4 genus 0 0 no rank 1 2632575 135 298653 Frankia sp. EAN1pec 135 0 species 1 106370 Frankia casuarinae 132 0 species 1 1 species 0 Frankia alni 326 1859 Frankia inefficax 116 298654 species 1 0 85007 43 Corynebacteriales 8817 1 0 order 158 0 family 3 85028 174 0 3 genus 2060 1 174 Tsukamurella 3 0 1 species 2061 Tsukamurella paurometabola 57 57704 114 Tsukamurella tyrosinosolvens 0 species 1 0 family 31 85025 2215 1 14 Nocardiaceae 0 genus 7 1817 1 612 7 Nocardia Nocardia cyriacigeorgica 102 135487 1 species 0 0 species 1 37330 Nocardia nova 71 99 Nocardia farcinica 37329 1 species 0 0 species 1 37332 Nocardia seriolae 92 0 1 species 37326 153 Nocardia brasiliensis 1 species 0 88 Nocardia terpenica 455432 1827 1589 1 Rhodococcus 68 0 23 genus 334542 51 Rhodococcus qingshengii 0 1 species species 1 0 62 Rhodococcus hoagii 43767 566 192944 12 no rank 0 Rhodococcus sp. WMMA185 43 679318 1 species 0 Rhodococcus sp. 008 34 1723645 species 1 0 species 1 0 47 Rhodococcus sp. 2G 1570939 1807790 Rhodococcus sp. BH4 33 0 species 1 0 species 1 1045808 29 Rhodococcus sp. YL-1 0 species 1 1033922 55 Rhodococcus sp. WB1 1805827 Rhodococcus sp. MTM3W5.2 64 0 1 species 1653479 43 Rhodococcus sp. PBTS 2 0 species 1 935199 Rhodococcus sp. p52 50 0 species 1 0 species 1 1564114 53 Rhodococcus sp. B7740 Rhodococcus sp. PBTS 1 68 1653478 1 species 0 1 species 0 Rhodococcus sp. H-CA8f 47 1727214 species 1 0 64 Rhodococcus rhodochrous 1829 Rhodococcus jostii 118 132919 1 species 0 0 1 species 1830 Rhodococcus ruber 86 1 species 0 Rhodococcus aetherivorans 93 191292 species 1 0 67 Rhodococcus pyridinivorans 103816 0 1 species 37919 Rhodococcus opacus 252 species 1 0 Rhodococcus fascians 73 1828 0 species 1 1833 Rhodococcus erythropolis 89 433 85026 family 8 0 2053 1 433 10 Gordonia 0 genus 8 0 species 1 1136941 Gordonia phthalatica 48 0 1 species 84595 59 Gordonia polyisoprenivorans 56 Gordonia iterans 1004901 1 species 0 Gordonia terrae 65 2055 species 1 0 1 species 0 Gordonia bronchialis 66 2054 2 no rank 0 129 2657482 0 1 species 337191 77 Gordonia sp. KTR9 Gordonia sp. YC-JH1 52 2059875 1 species 0 2 Segniliparaceae 1 43 316606 family 2 0 genus 1 0 41 286801 1 species 0 Segniliparus rotundus 41 286802 0 family 57 1762 3792 1 4 Mycobacteriaceae 0 2 genus 697025 Hoyosella 1 36 1 0 1 species 639313 Hoyosella subflava 35 1073531 114 0 2 genus 0 species 1 875328 Mycobacterium sinense 66 48 Mycobacterium terrae 1788 species 1 0 516 670516 5 genus 0 1774 Mycobacterium chelonae 37 0 1 species 1578165 39 Mycobacterium saopaulense 0 species 1 83262 59 Mycobacterium immunogenum 0 1 species 0 species 1 36809 Mycobacterium abscessus 347 Mycobacterium stephanolepidis 34 1520670 species 1 0 1763 125 Mycobacterium 2164 1 0 genus 34 482462 Mycobacterium dioxanotrophicus 99 0 species 1 39 2249310 1 species group 0 Mycobacterium shigaense 39 722731 1 species 0 600 120793 species group 8 0 0 species 1 1764 257 Mycobacterium avium 1 species 0 89 Mycobacterium colombiense 339268 species 1 0 32 Mycobacterium paraintracellulare 1138383 0 4 species 1767 1 180 Mycobacterium intracellulare 43 1203599 Mycobacterium yongonense 38 0 1 subspecies 222805 74 Mycobacterium chimaera 0 1 subspecies Mycobacterium indicus pranii 25 35617 subspecies 1 0 0 1 species 701042 Mycobacterium marseillense 42 0 species 1 1809 70 Mycobacterium ulcerans 63 Mycobacterium kansasii 1768 species 1 0 0 species 1 1781 113 Mycobacterium marinum 1 species 0 63 Mycobacterium liflandii 261524 167 77643 species group 4 0 species 1 0 34 Mycobacterium canettii 78331 species 3 0 1 133 45 Mycobacterium tuberculosis 1773 biotype 1 0 Mycobacterium bovis 45 1765 1 biotype 0 43 Mycobacterium africanum 33894 0 no rank 13 2642494 772 species 1 0 55 Mycobacterium sp. EPa45 1545728 2051552 52 Mycobacterium sp. PYR15 0 species 1 1168287 Mycobacterium sp. MOTT36Y 29 0 species 1 70 Mycobacterium sp. KMS 189918 species 1 0 0 species 1 1879023 Mycobacterium sp. djl-10 84 Mycobacterium sp. YC-RL4 59 1682113 species 1 0 species 1 0 68 Mycobacterium sp. MCS 164756 1273687 55 Mycobacterium sp. VKM Ac-1817D 0 1 species 164757 Mycobacterium sp. JLS 56 0 species 1 1920667 Mycobacterium sp. WY10 67 0 1 species species 1 0 101 Mycobacterium sp. JS623 212767 species 1 0 35 Mycobacterium sp. QIA-37 1561223 1570328 41 Mycobacterium sp. NRRL B-3805 0 species 1 0 species 1 1769 17 Mycobacterium leprae 29311 36 Mycobacterium haemophilum 0 1 species 958 1866885 genus 13 0 0 species 1 1766 53 Mycobacterium fortuitum 1 species 0 Mycobacterium gilvum 111 1804 0 species 1 1791 Mycobacterium aurum 86 110539 94 Mycobacterium vanbaalenii 0 species 1 0 1 species 134601 54 Mycobacterium goodii species 1 0 78 Mycobacterium litorale 758802 88 Mycobacterium vaccae 1810 species 1 0 species 1 0 Mycobacterium smegmatis 81 1772 1 species 0 83 Mycobacterium chubuense 1800 0 1 species 1797 Mycobacterium thermoresistibile 55 species 1 0 88 Mycobacterium phlei 1771 46 Mycobacterium rhodesiae 36814 1 species 0 species 1 0 41 Mycobacterium neoaurum 1795 family 52 0 1996 1 2 Corynebacteriaceae 1653 0 51 genus 1716 1 1994 Corynebacterium 26 1 species 0 Corynebacterium variabile 51 1727 0 species 1 1705 Corynebacterium stationis 26 1 species 0 Corynebacterium uterequi 196 1072256 1721 Corynebacterium callunae 28 0 1 species 1 species 0 Corynebacterium sphenisci 52 191493 species 1 0 41 Corynebacterium ulcerans 65058 0 species 1 1050174 Corynebacterium epidermidicanis 26 43770 62 Corynebacterium striatum 0 1 species 0 species 1 169292 Corynebacterium aurimucosum 17 92706 38 [Brevibacterium] flavum 0 species 1 0 species 1 42817 30 Corynebacterium argentoratense 258224 Corynebacterium resistens 24 0 species 1 35755 Corynebacterium kutscheri 63 0 species 1 161896 32 Corynebacterium camporealensis 0 species 1 0 1 species 1652495 50 Corynebacterium crudilactis 108486 Corynebacterium falsenii 32 0 species 1 Corynebacterium singulare 22 161899 1 species 0 203263 Corynebacterium aquilae 45 0 species 1 1223514 Corynebacterium humireducens 45 0 species 1 38289 45 Corynebacterium jeikeium 0 species 1 Corynebacterium phocae 40 161895 species 1 0 30 Corynebacterium urealyticum 43771 species 1 0 Corynebacterium pseudotuberculosis 34 1719 species 1 0 1717 Corynebacterium diphtheriae 51 0 1 species 25 Corynebacterium lactis 1231000 species 1 0 0 1 species 571915 34 Corynebacterium mustelae 1 species 0 31 Corynebacterium imitans 156978 1 species 0 Corynebacterium doosanense 31 1121358 Corynebacterium kroppenstedtii 8 161879 species 1 0 1 species 0 23 Corynebacterium casei 160386 Corynebacterium ammoniagenes 23 1697 species 1 0 Corynebacterium glaucum 25 187491 species 1 0 0 species 1 1408191 31 Corynebacterium deserti Corynebacterium testudinoris 25 136857 species 1 0 Corynebacterium cystitidis 45 35757 species 1 0 88 Corynebacterium glutamicum 1718 species 1 0 species 1 0 30 Corynebacterium efficiens 152794 225326 40 Corynebacterium halotolerans 0 species 1 0 species 1 28028 Corynebacterium flavescens 25 species 1 0 Corynebacterium simulans 33 146827 52 2624378 no rank 2 0 species 1 0 31 Corynebacterium sp. NML98-0116 702967 0 species 1 1487956 21 Corynebacterium sp. ATCC 6931 1404244 Corynebacterium glyciniphilum 44 0 species 1 401472 20 Corynebacterium ureicelerivorans 0 1 species 349751 Corynebacterium marinum 42 0 species 1 11 Corynebacterium atypicum 191610 1 species 0 89154 53 Corynebacterium terpenotabidum 0 1 species 0 species 1 575200 49 Corynebacterium maris 33 Corynebacterium frankenforstense 1230998 1 species 0 67 Corynebacterium vitaeruminis 38305 1 species 0 1 Dietziaceae 93 1 85029 family 3 0 37914 92 0 genus 2 1 species 0 Dietzia timorensis 34 499555 0 1 no rank 2617939 58 0 species 1 712270 58 Dietzia sp. oral taxon 368 no rank 1 0 28 697024 28 1847725 1 genus 0 0 species 1 1528099 Lawsonella clevelandensis 28 0 order 25 85004 1 954 5 Bifidobacteriales family 24 0 12 Bifidobacteriaceae 949 1 31953 genus 2 0 1 137 1 Gardnerella 2701 136 Gardnerella vaginalis 2702 1 species 0 0 1 genus 196082 18 species 1 0 Parascardovia denticolens 18 78258 1 genus 0 46 196081 species 1 0 46 Scardovia inopinata 78259 1678 1 736 Bifidobacterium 10 0 19 genus species 1 0 21 Bifidobacterium indicum 1691 1 species 0 Bifidobacterium thermophilum 15 33905 1680 Bifidobacterium adolescentis 33 0 species 1 Bifidobacterium scardovii 60 158787 species 1 0 28025 59 Bifidobacterium animalis 0 1 species 1 species 0 58 Bifidobacterium pseudolongum 1694 0 species 1 1687 22 Bifidobacterium coryneforme 1681 Bifidobacterium bifidum 38 0 species 1 0 1 species 1683 Bifidobacterium angulatum 33 species 1 0 57 Bifidobacterium actinocoloniiforme 638619 1689 43 Bifidobacterium dentium 0 species 1 1686 48 1 16 Bifidobacterium catenulatum 0 species 2 630129 32 Bifidobacterium kashiwanohense 0 subspecies 1 0 species 1 35760 Bifidobacterium choerinum 41 1685 61 Bifidobacterium breve 0 species 1 75 Bifidobacterium longum 216816 1 species 0 species 1 0 36 Bifidobacterium asteroides 1684 Bifidobacterium pseudocatenulatum 26 28026 species 1 0 0 12 order 2039638 Candidatus Nanopelagicales 4 1 1270 family 11 0 1266 2162846 0 4 genus 2039639 Candidatus Nanopelagicus 3 1 641 Candidatus Nanopelagicus limnes 223 1884634 species 1 0 species 1 0 Candidatus Nanopelagicus hibericus 177 1884915 1 species 0 238 Candidatus Nanopelagicus abundans 1884916 7 genus 0 Candidatus Planktophila 2 1 625 622681 species 1 0 Candidatus Planktophila versatilis 134 1884905 species 1 0 83 Candidatus Planktophila lacus 1884913 0 species 1 1884904 60 Candidatus Planktophila sulfonica 0 species 1 1884914 Candidatus Planktophila dulcis 106 species 1 0 125 Candidatus Planktophila limnetica 573600 0 species 1 1884907 Candidatus Planktophila vernalis 115 Micromonosporales 6 1 1336 85008 18 order 0 28056 1330 1 Micromonosporaceae 30 0 17 family 306 1 3 Plantactinospora 673534 genus 4 0 no rank 3 0 303 2631981 species 1 0 Plantactinospora sp. KBS50 87 2024580 0 species 1 2108470 Plantactinospora sp. BC1 109 0 species 1 2071627 Plantactinospora sp. BB1 107 0 2 genus 168694 123 species 1 0 53 Salinispora tropica 168695 species 1 0 70 Salinispora arenicola 168697 Actinoplanes 8 1 584 1865 6 genus 0 196914 94 Actinoplanes friuliensis 0 species 1 0 species 1 1866 109 Actinoplanes missouriensis 373 2626549 no rank 3 0 0 species 1 649831 103 Actinoplanes sp. N902-109 0 1 species 134676 Actinoplanes sp. SE50/110 135 0 1 species 2033844 Actinoplanes sp. SE50 135 1873 1 287 Micromonospora 3 0 4 genus 1 no rank 0 99 2617518 1 species 0 99 Micromonospora sp. L5 648999 0 species 1 1003110 80 Verrucosispora maris 1 species 0 105 Micromonospora aurantiaca 47850 order 82 0 1 11782 20 Streptomycetales 85011 81 family 0 Streptomycetaceae 43 11762 1 2062 genus 75 0 211 Streptomyces 10870 1 1883 1 species 0 105 Streptomyces lividans 1916 89 Streptomyces sp. XZHG99 2049881 species 1 0 Streptomyces scabiei 153 1930 species 1 0 1 species 0 Streptomyces lavendulae 112 1914 0 species 1 1169025 60 Streptomyces pratensis 0 1 species 1783515 Streptomyces sp. S10(2016) 101 species 1 0 130 Streptomyces glaucescens 1907 0 species 1 75293 539 Streptomyces autolyticus 0 1 species 408015 Streptomyces xiamenensis 96 species 1 0 Streptomyces hygroscopicus 305 1912 species 1 0 185 Streptomyces formicae 1616117 1 species 0 Streptomyces puniciscabiei 96 164348 1 species 0 128 Streptomyces niveus 193462 0 1 species 285473 Streptomyces rubrolavendulae 85 182 Streptomyces bingchenggensis 379067 species 1 0 181 629295 species group 2 0 0 species subgroup 1 1482596 98 98 Streptomyces griseus 1911 1 species 0 1482558 83 0 species subgroup 1 0 species 1 1908 83 Streptomyces globisporus 1 species 0 Streptomyces lincolnensis 143 1915 1935 Streptomyces violaceoruber 89 0 species 1 species 1 0 111 Streptomyces alboflavus 67267 species 1 0 92 Streptomyces clavuligerus 1901 110 Streptomyces malaysiensis 92644 1 species 0 species 1 0 136 Streptomyces avermitilis 33903 154 Streptomyces ambofaciens 1889 1 species 0 0 species 1 1355015 Streptomyces pluripotens 95 0 1 species 1940 Streptomyces albireticuli 101 Streptomyces vietnamensis 104 362257 species 1 0 1926 Streptomyces reticuli 108 0 1 species Streptomyces cyaneogriseus 79 68192 1 species 0 0 species 1 1888 357 Streptomyces albus 68570 879 Streptomyces albulus 0 species 1 Streptomyces pactum 255 68249 species 1 0 2 species group 0 552 1477431 0 1 species 42239 Streptomyces sampsonii 99 0 1 species 1902 453 Streptomyces coelicolor 2593676 2848 0 no rank 24 0 1 species 2059884 129 Streptomyces sp. CMB-StM0423 444103 112 Streptomyces sp. CNQ-509 0 1 species 1265601 Streptomyces sp. PAMC 26508 55 0 1 species 1 species 0 75 Streptomyces sp. SirexAA-E 862751 1495638 218 Streptomyces sp. M56 0 1 species 0 1 species 1961713 101 Streptomyces sp. MOE7 species 1 0 Streptomyces sp. P3 173 2135430 123 Streptomyces sp. CdTB01 1725411 1 species 0 1 species 0 94 Streptomyces sp. WAC00288 2094021 1 species 0 Streptomyces sp. TN58 120 234612 Streptomyces sp. 3211 146 1964449 species 1 0 1561022 93 Streptomyces sp. CCM_MD2014 0 species 1 1837283 74 Streptomyces sp. S8 0 species 1 Streptomyces sp. RTd22 111 1841249 species 1 0 0 1 species 1262452 Streptomyces sp. 769 143 0 1 species 1972846 107 Streptomyces sp. Sge12 132 Streptomyces sp. fd1-xmd 1812480 1 species 0 1984801 Streptomyces sp. CLI2509 92 0 1 species 0 species 1 465541 126 Streptomyces sp. Mg1 0 species 1 1849967 Streptomyces sp. SAT1 170 101 Streptomyces sp. CFMR 7 1649184 1 species 0 102 Streptomyces sp. Tue 6075 1661694 species 1 0 Streptomyces sp. FR-008 163 206662 1 species 0 0 species 1 1751294 88 Streptomyces sp. 4F 0 species 1 68202 Streptomyces fulvissimus 87 species 1 0 89 Streptomyces parvulus 146923 species 1 0 73 Streptomyces peucetius 1950 1 species 0 Streptomyces violaceusniger 118 68280 species 1 0 Streptomyces alfalfae 108 1642299 0 1 species 1038928 Streptomyces xinghaiensis 98 species 1 0 Streptomyces noursei 114 1971 Streptomyces collinus 101 42684 1 species 0 233 Streptomyces venezuelae 54571 species 1 0 0 species 1 29303 86 Streptomyces cattleya Streptomyces lydicus 282 47763 1 species 0 553510 Streptomyces gilvosporeus 127 0 species 1 1969 77 Streptomyces chartreusis 0 species 1 0 species 1 1437453 103 Streptomyces leeuwenhoekii 1 species 0 89 Streptomyces pristinaespiralis 38300 68214 Streptomyces griseochromogenes 114 0 species 1 2063 1 849 6 Kitasatospora 0 genus 5 2633591 116 0 1 no rank 1 species 0 Kitasatospora sp. MMS16-BH015 116 2018025 371 Kitasatospora albolonga 68173 1 species 0 1 species 0 128 Kitasatospora aureofaciens 1894 2066 228 Kitasatospora setae 0 species 1 2 no rank 0 52 1643818 52 1 1 Thermobispora 147067 genus 2 0 2006 Thermobispora bispora 51 0 species 1 0 order 1 1643683 43 85032 43 0 1 family 28048 43 0 1 genus 1 species 0 43 Acidothermus cellulolyticus 28049 343 1752188 4 no rank 0 species 1 0 Actinobacteria bacterium IMCC26103 81 1848756 1848255 Actinobacteria bacterium IMCC25003 51 0 species 1 1848755 Actinobacteria bacterium IMCC26077 88 0 1 species 1 species 0 Actinobacteria bacterium IMCC19121 123 1848754 67819 38 0 phylum 1 0 1 class 1663419 38 1 order 0 38 1663425 0 1 family 1663426 38 1005038 38 0 genus 1 0 1 species 1005039 38 Fimbriimonas ginsengisoli phylum 5 0 1 457 2 Elusimicrobia 74152 0 1 no rank 99260 128 167965 uncultured Termite group 1 bacterium 128 0 1 species 2 class 0 252 447830 order 2 0 252 1783344 2 family 0 252 1783343 1408194 252 0 genus 2 Candidatus Endomicrobium trichonymphae 127 1408204 species 1 0 Endomicrobium proavitum 125 1408281 1 species 0 641853 75 0 class 1 641854 75 0 order 1 641876 75 0 1 family 75 423604 1 genus 0 423605 Elusimicrobium minutum 75 0 1 species 0 4 phylum 200938 88 118001 3 Chrysiogenetes 88 1 0 class 4 189769 Chrysiogenales 2 85 1 0 3 order 0 family 2 189770 83 393029 83 1 Desulfurispirillum 1 0 2 genus species 1 0 82 Desulfurispirillum indicum 936456 phylum 2 0 164 1930617 164 1962850 2 class 0 Calditrichales 1 1 164 1962852 2 order 0 163 1962854 family 1 0 163 187144 1 genus 0 0 species 1 187145 163 Caldithrix abyssi 0 clade 3 2498710 98 0 3 phylum 67814 98 3 class 0 Caldisericia 1 98 1 693071 693072 1 Caldisericales 1 97 0 order 2 0 1 family 693073 96 0 genus 1 693074 96 0 species 1 693075 Caldisericum exile 96 phylum 16 0 615 57723 2 class 0 64 1562566 0 2 genus 458032 Chloracidobacterium 1 64 1 63 Chloracidobacterium thermophilum 458033 species 1 0 14 class 0 1 551 Acidobacteriia 3 204432 Solibacterales 2 89 1 332160 3 order 0 332161 1 Solibacteraceae 1 87 0 family 2 genus 1 0 86 332162 0 1 species 332163 Candidatus Solibacter usitatus 86 10 order 0 Acidobacteriales 2 459 1 204433 9 family 0 457 1 Acidobacteriaceae 8 204434 1 Terriglobus 149 1 392733 genus 3 0 392734 Terriglobus roseus 64 0 1 species 870903 Terriglobus saanensis 84 0 1 species 940557 154 0 genus 2 92 Granulicella tundricola 940615 1 species 0 62 Granulicella mallensis 940614 species 1 0 1 genus 0 90 33973 90 Acidobacterium capsulatum 33075 species 1 0 0 genus 2 658061 56 1 1 Candidatus Koribacter 658062 55 Candidatus Koribacter versatilis 0 1 species 0 phylum 1939 1224 62 Proteobacteria 327930 1 0 4 class 580370 106 4 order 0 1 106 Mariprofundales 3 580371 0 3 family 580372 103 377315 Mariprofundus 4 103 1 0 3 genus species 1 0 Mariprofundus ferrinatatus 49 1921087 0 species 1 1921086 50 Mariprofundus aestuarium 0 class 323 28216 50 Betaproteobacteria 1 32404 32003 2457 1 Nitrosomonadales 21 0 38 order 206379 1072 1 Nitrosomonadaceae 3 0 12 family 35798 Nitrosospira 1 1 167 0 4 genus species 1 0 Nitrosospira lacus 61 1288494 35799 50 Nitrosospira briensis 0 1 species 0 1 species 1231 Nitrosospira multiformis 55 0 7 genus 914 Nitrosomonas 6 1 902 species 1 0 166 Nitrosomonas ureae 44577 0 1 species 915 Nitrosomonas europaea 59 0 2 no rank 2609265 334 species 1 0 171 Nitrosomonas sp. AL212 153948 0 species 1 261292 163 Nitrosomonas sp. Is79A3 Nitrosomonas communis 214 44574 1 species 0 916 123 Nitrosomonas eutropha 0 1 species 4 family 0 1 149 Gallionellaceae 2 90627 0 genus 2 96 1 69 1 Gallionella 68 Gallionella capsiferriformans 370405 species 1 0 0 genus 1 314343 78 63745 Sideroxydans lithotrophicus 78 0 1 species 137 2772226 3 family 0 0 1 genus 1778653 57 1 no rank 0 57 2637784 1985873 57 Sulfuriferula sp. AH1 0 1 species 935200 1 Sulfuricella 80 1 0 genus 2 0 species 1 649841 79 Sulfuricella denitrificans 0 family 3 2008793 1 Sterolibacteriaceae 121 1 1054211 69 0 genus 1 69 Sulfuritalea hydrogenivorans 748811 species 1 0 genus 1 0 51 378210 2639971 51 0 no rank 1 0 1 species 1842540 51 Methyloversatilis sp. RAC08 family 2 0 43 2008790 2 genus 0 43 1 Thiobacillus 2 919 0 species 1 36861 Thiobacillus denitrificans 41 0 13 family 32011 Methylophilaceae 10 1 914 0 3 genus 359407 265 1 Methylotenera 2 359408 Methylotenera mobilis 107 0 species 1 1055487 Methylotenera versatilis 156 0 1 species 1 Methylophilus 1 71 16 genus 2 0 70 2630143 no rank 1 0 1662285 70 Methylophilus sp. TWE2 0 species 1 genus 3 0 1 405 2 Candidatus Methylopumilus 1679002 1581680 126 Candidatus Methylopumilus turicensis 0 species 1 1581557 Candidatus Methylopumilus planktonicus 277 0 species 1 genus 1 0 56 404 Methylobacillus flagellatus 56 405 species 1 0 3 genus 0 107 1 Methylovorus 2 81682 Methylovorus glucosotrophus 49 266009 species 1 0 56 2634027 1 no rank 0 1 species 0 56 Methylovorus sp. MP688 887061 24392 1 201 Burkholderiales 80840 order 217 0 1082 224471 no rank 12 0 genus 1 0 104 212743 Rhizobacter gummiphilus 104 946333 1 species 0 32012 77 0 genus 1 926 Thiomonas intermedia 77 0 1 species 185 93681 genus 1 0 76731 185 Roseateles depolymerans 0 1 species [Polyangium] brachysporum 172 413882 species 1 0 318147 128 0 genus 1 no rank 1 0 128 2642959 1768242 Paucibacter sp. KCTC 42545 128 0 species 1 90 88 1 genus 0 1 species 0 90 Leptothrix cholodnii 34029 28067 122 1 Rubrivivax 2 0 2 genus Rubrivivax gelatinosus 120 28068 1 species 0 0 genus 2 65047 3 Mitsuaria 1 119 116 2648776 no rank 1 0 1 species 0 Mitsuaria sp. 7 116 1658665 genus 2 0 1 Methylibium 85 1 316612 Methylibium petroleiphilum 84 105560 species 1 0 80841 137 0 2 no rank 0 1 species 1469502 43 Burkholderiales bacterium GJ-E10 Burkholderiales bacterium YL45 94 1834205 species 1 0 80864 Comamonadaceae 41 1 4639 0 52 family genus 4 0 1 534 3 Comamonas 283 225992 Comamonas kerstersii 140 0 1 species 0 1 species 1082851 Comamonas serinivorans 206 185 Comamonas testosteroni 285 species 1 0 0 2 genus 665874 116 2 no rank 0 116 2626134 Limnohabitans sp. 103DPR2 51 1678129 1 species 0 0 species 1 1678128 Limnohabitans sp. 63ED37-2 65 0 genus 2 352450 1 47 2 Simplicispira 1 species 0 Simplicispira sp. SC1-8 45 2109915 genus 4 0 2 Hydrogenophaga 236 1 47420 70 Hydrogenophaga crassostreae 1763535 1 species 0 2 no rank 0 164 2610897 795665 Hydrogenophaga sp. PBC 91 0 species 1 1842537 73 Hydrogenophaga sp. RAC07 0 species 1 80865 584 1 Delftia 11 0 5 genus 0 no rank 2 2613839 316 0 species 1 1920191 131 Delftia sp. HK171 0 species 1 742013 185 Delftia sp. Cs1-4 80866 121 Delftia acidovorans 0 species 1 0 1 species 180282 136 Delftia tsuruhatensis 3 genus 0 Polaromonas 1 1 429 52972 216465 Polaromonas naphthalenivorans 98 0 1 species 330 2638319 1 no rank 0 0 species 1 296591 330 Polaromonas sp. JS666 28065 1 292 Rhodoferax 4 0 5 genus 0 1 species 192843 Rhodoferax ferrireducens 68 50 Rhodoferax saidenbachensis 1484693 1 species 0 1 species 0 Rhodoferax antarcticus 69 81479 Rhodoferax koreense 101 1842727 1 species 0 1 genus 0 63 1649468 no rank 1 0 63 2641902 0 1 species 2109913 63 Melaminivora sp. SC2-9 1 559 18 Acidovorax 12916 genus 9 0 2684926 271 0 4 no rank 1858609 Acidovorax sp. T1 95 0 1 species 0 species 1 1842533 Acidovorax sp. RAC01 61 0 1 species 232721 Acidovorax sp. JS42 61 54 Acidovorax sp. KKS102 358220 species 1 0 80869 60 Acidovorax citrulli 0 1 species 553814 54 Acidovorax sp. NA3 0 1 species 721785 Acidovorax ebreus 66 0 species 1 1 species 0 90 Acidovorax avenae 80867 34072 1 914 15 Variovorax 0 genus 5 Variovorax boronicumulans 116 436515 1 species 0 Variovorax paradoxus 542 34073 1 species 0 0 2 no rank 663243 241 species 1 0 119 Variovorax sp. PAMC 28711 1795631 1 species 0 122 Variovorax sp. PMC12 2126319 0 genus 1 2678886 78 species 1 0 Melaminivora sp. SC2-7 78 2116657 genus 1 0 66 1436289 66 Candidatus Symbiobacter mobilis 1436290 1 species 0 219181 99 0 2 genus no rank 1 0 35 2645081 1658672 Ottowia sp. oral taxon 894 35 0 species 1 64 Ottowia sp. KADR8-3 2109914 1 species 0 238749 Diaphorobacter 1 58 1 0 2 genus 0 1 species 1546149 57 Diaphorobacter polyhydroxybutyrativorans genus 1 0 159 364316 159 Verminephrobacter eiseniae 364317 1 species 0 0 genus 1 174951 161 94132 Ramlibacter tataouinensis 161 0 1 species genus 1 0 99 201096 1 species 0 Alicycliphilus denitrificans 99 179636 2490452 104 0 genus 2 1 species 0 49 Comamonadaceae bacterium A1 1458425 Comamonadaceae bacterium B1 55 1458426 1 species 0 0 family 84 119060 59 Burkholderiaceae 1 12438 93217 Pandoraea 12 1 1151 0 10 genus 0 1 species 93220 Pandoraea pnomenusa 129 1 species 0 Pandoraea pulmonicola 407 93221 species 1 0 124 Pandoraea oxalativorans 573737 93218 72 Pandoraea apista 0 species 1 species 1 0 Pandoraea vervacti 80 656178 60 Pandoraea thiooxydans 445709 1 species 0 93219 152 Pandoraea norimbergensis 0 species 1 Pandoraea sputorum 55 93222 1 species 0 60 Pandoraea faecigallinarum 656179 1 species 0 5 genus 0 1 855 Ralstonia 12 48736 448 Ralstonia solanacearum 305 1 species 0 190721 109 Ralstonia insidiosa 0 species 1 159 Ralstonia pickettii 329 species 1 0 Ralstonia mannitolilytica 127 105219 1 species 0 32008 Burkholderia 197 6837 1 0 41 genus 0 11 no rank 2613784 951 61 Burkholderia sp. KJ006 416344 species 1 0 0 1 species 1795043 Burkholderia sp. PAMC 26561 65 0 1 species 1097668 Burkholderia sp. YI23 124 1468409 Burkholderia sp. 2002721687 74 0 1 species 758796 Burkholderia sp. RPE67 141 0 1 species 640510 Burkholderia sp. CCGE1001 81 0 species 1 1795874 68 Burkholderia sp. PAMC 28687 0 1 species 61 Burkholderia sp. Bp7605 1740163 species 1 0 1 species 0 76 Burkholderia sp. Bp5365 1740162 Burkholderia sp. CCGE1003 89 640512 species 1 0 Burkholderia sp. HB1 111 1678678 species 1 0 214 Burkholderia gladioli 28095 species 1 0 Burkholderia glumae 222 337 species 1 0 94 Burkholderia plantarii 41899 species 1 0 19 species group 0 2738 87882 0 1 species 488731 76 Burkholderia seminalis 1 species 0 Burkholderia cepacia 440 292 Burkholderia metallica 44 488729 1 species 0 1 species 0 50 Burkholderia pyrrocinia 60550 1 species 0 Burkholderia ambifaria 126 152480 0 species 1 87883 180 Burkholderia multivorans 1 species 0 Burkholderia lata 308 482957 488732 61 Burkholderia diffusa 0 1 species 0 1 species 60552 Burkholderia vietnamiensis 125 1503055 64 Burkholderia territorii 0 1 species species 1 0 Burkholderia dolosa 92 152500 110 Burkholderia stabilis 95485 1 species 0 1 species 0 145 Burkholderia latens 488446 1 species 0 62 [Pseudomonas] mesoacidophila 265293 1 species 0 247 Burkholderia ubonensis 101571 1 species 0 Burkholderia contaminans 110 488447 1 species 0 72 Burkholderia stagnalis 1503054 65 Burkholderia pseudomultivorans 1207504 species 1 0 95486 361 Burkholderia cenocepacia 0 1 species 0 7 species group 111527 2421 0 species 1 342113 146 Burkholderia oklahomensis 13373 Burkholderia mallei 219 0 species 1 1 species 0 238 Burkholderia thailandensis 57975 Burkholderia sp. MSMB617WGS 116 1637831 1 species 0 28450 Burkholderia pseudomallei 1432 0 species 1 species 1 0 Burkholderia sp. MSMB0266 135 1637837 1637841 135 Burkholderia sp. MSMB0852 0 species 1 1827195 103 0 1 genus 758793 103 Burkholderia sp. RPE64 0 1 species genus 12 0 29 Paraburkholderia 1 1401 1822464 0 1 species 2026199 130 Paraburkholderia aromaticivorans Paraburkholderia xenovorans 107 36873 1 species 0 1 species 0 205 Paraburkholderia caribensis 75105 103 2615204 no rank 1 0 1926494 103 Paraburkholderia sp. SOS3 0 1 species Paraburkholderia phymatum 103 148447 species 1 0 0 species 1 311230 Paraburkholderia terrae 93 0 species 1 169430 103 Paraburkholderia hospita 948107 Paraburkholderia sprentiae 88 0 species 1 134537 Paraburkholderia fungorum 113 0 1 species Paraburkholderia phytofirmans 251 261302 1 species 0 76 Paraburkholderia phenoliruptrix 252970 1 species 0 450 1 4 Polynucleobacter 44013 genus 4 0 Polynucleobacter asymbioticus 203 576611 species 1 0 Polynucleobacter duraquae 151 1835254 species 1 0 0 1 species 576610 Polynucleobacter necessarius 92 genus 9 0 1517 1 21 Cupriavidus 106589 68895 259 Cupriavidus basilensis 0 species 1 no rank 2 0 366 2640874 Cupriavidus sp. USMAA2-4 204 876364 1 species 0 162 Cupriavidus sp. USMAHM13 1389192 1 species 0 0 1 species 82541 103 Cupriavidus gilardii 143 Cupriavidus sp. USMAA1020 367825 1 species 0 1 species 0 Cupriavidus pinatubonensis 90 248026 153 Cupriavidus necator 106590 1 species 0 1 species 0 382 Cupriavidus metallidurans 119219 0 genus 1 2571159 65 0 1 species 412963 65 Paraburkholderia rhizoxinica 0 family 27 75682 20 Oxalobacteraceae 2292 1 29580 585 1 6 Janthinobacterium 0 genus 7 55508 Janthinobacterium agaricidamnosum 101 0 1 species 368607 107 Janthinobacterium svalbardensis 0 species 1 0 no rank 4 2610881 371 1236179 Janthinobacterium sp. B9-8 112 0 1 species 1 species 0 Janthinobacterium sp. LM6 91 1938606 Janthinobacterium sp. Marseille 67 375286 1 species 0 Janthinobacterium sp. 1_2014MBL_MicDiv 101 1644131 species 1 0 0 genus 4 202907 1 364 6 Collimonas 1 species 0 138 Collimonas arenae 279058 Collimonas fungivorans 121 158899 1 species 0 1 species 0 Collimonas pratensis 99 279113 0 2 genus 303379 140 species 1 0 70 Herminiimonas arsenicoxydans 204773 70 Herminiimonas arsenitoxidans 1809410 1 species 0 genus 6 0 4 Herbaspirillum 645 1 963 2624150 79 0 1 no rank 0 species 1 2025949 Herbaspirillum sp. meg3 79 Herbaspirillum hiltneri 220 341045 1 species 0 0 1 species 80842 78 Herbaspirillum rubrisubalbicans 0 species 1 964 179 Herbaspirillum seropedicae 0 1 species 92645 Herbaspirillum frisingense 85 846 58 0 1 genus 58 Oxalobacter formigenes 847 1 species 0 1 480 7 Massilia 149698 genus 6 0 Massilia putida 102 1141883 species 1 0 species 1 0 Massilia sp. B2 98 2045208 2609279 185 0 2 no rank 0 1 species 1678028 Massilia sp. NR 4-1 73 1 species 0 Massilia sp. WG5 112 1707785 Massilia sp. ZMN-3 88 2072590 species 1 0 506 1 3603 16 Alcaligenaceae 0 family 39 133 1100891 genus 1 0 1 species 0 133 Paenalcaligenes hominis 643674 genus 3 0 1 454 3 Taylorella 29574 244 Taylorella equigenitalis 29575 1 species 0 84590 207 Taylorella asinigenitalis 0 species 1 0 genus 2 359336 1 61 1 Castellaniella 0 1 species 75697 Castellaniella defragrans 60 6 genus 0 772 1 Achromobacter 19 222 0 species 1 217204 Achromobacter insolitus 98 1 species 0 Achromobacter denitrificans 146 32002 Achromobacter spanius 136 217203 1 species 0 Achromobacter xylosoxidans 292 85698 species 1 0 1 no rank 0 81 2626865 0 1 species 1758194 Achromobacter sp. AONIH1 81 507 326 1 Alcaligenes 3 0 2 genus species 1 0 323 Alcaligenes faecalis 511 124 1472344 1 genus 0 species 1 0 124 Basilea psittacipulmonis 1472345 0 1 genus 1921582 54 species 1 0 Orrella dioscoreae 54 1851544 5 Advenella 1 143 290425 genus 3 0 species 1 0 80 Advenella mimigardefordensis 302406 1 species 0 58 Advenella kashmirensis 310575 genus 17 0 30 Bordetella 1321 1 517 Bordetella pertussis 106 520 species 1 0 1 species 0 Bordetella pseudohinzii 68 1331258 1 species 0 Bordetella genomosp. 8 74 1416806 63 Bordetella holmesii 35814 1 species 0 species 1 0 172 Bordetella bronchiseptica 518 0 species 1 463014 Bordetella flabilis 73 species 1 0 Bordetella petrii 63 94624 0 1 species 463025 Bordetella bronchialis 89 0 1 species 103855 Bordetella hinzii 73 Bordetella genomosp. 9 83 1416803 species 1 0 Bordetella genomosp. 13 80 463040 1 species 0 0 1 species 123899 Bordetella trematum 58 no rank 1 0 45 2630031 1 species 0 Bordetella sp. H567 45 1697043 463024 94 Bordetella genomosp. 6 0 1 species species 1 0 Bordetella parapertussis 112 519 0 species 1 521 38 Bordetella avium 90243 94 0 genus 1 1 species 0 94 Oligella urethralis 90245 105 305976 genus 1 0 1 no rank 0 105 2640016 1 species 0 Pusillimonas sp. T7-7 105 1007105 no rank 2 0 216 33809 0 species 1 1904640 68 Betaproteobacteria bacterium GR16-43 0 species 1 543913 148 beta proteobacterium CB 0 no rank 11 119066 1993 1 genus 0 298 1381133 669502 Candidatus Profftella armatura 298 0 1 species 189384 11 0 1 genus 189385 11 Candidatus Tremblaya princeps 0 species 1 327159 Candidatus Accumulibacter 2 89 1 0 2 genus 0 species 1 327160 87 Candidatus Accumulibacter phosphatis genus 1 0 68 1301080 1 species 0 68 Candidatus Nasuia deltocephalinicola 1160784 0 genus 6 33055 2 Kinetoplastibacterium 1 1527 225 Candidatus Kinetoplastibacterium galatii 994695 1 species 0 33056 368 Candidatus Kinetoplastibacterium crithidii 0 species 1 994692 Candidatus Kinetoplastibacterium desouzaii 396 0 1 species Candidatus Kinetoplastibacterium oncopeltii 299 994696 species 1 0 237 Kinetoplastibacterium blastocrithidii 233181 1 species 0 order 34 0 18 Neisseriales 2179 1 206351 family 12 0 10 Chromobacteriaceae 648 1 1499392 885864 Jeongeupia 1 72 1 0 2 genus no rank 1 0 71 2619593 0 species 1 1906741 Jeongeupia sp. USM3 71 1 Aquaspirillum 65 1 187 genus 2 0 64 2620219 1 no rank 0 1938604 64 Aquaspirillum sp. LM1 0 species 1 0 2 genus 168470 Laribacter 1 1 70 Laribacter hongkongensis 69 168471 species 1 0 90153 374 0 4 no rank 0 4 genus 535 Chromobacterium 3 1 374 0 no rank 1 2641838 101 2059672 101 Chromobacterium sp. ATCC 53434 0 species 1 1 species 0 Chromobacterium violaceum 115 536 1108595 155 Chromobacterium vaccinii 0 species 1 genus 1 0 57 568394 no rank 1 0 57 2642558 1 species 0 Pseudogulbenkiania sp. NH8B 57 748280 0 21 family 481 1513 1 Neisseriaceae 8 482 Neisseria 24 1 680 0 12 genus 0 1 species 486 Neisseria lactamica 56 Neisseria zoodegmatis 67 326523 1 species 0 76 Neisseria weaveri 28091 1 species 0 88 2623750 2 no rank 0 655307 Neisseria sp. KEM232 49 0 1 species 1853276 39 Neisseria sp. 10022 0 1 species 0 1 species 1853278 Neisseria sp. 10023 29 48 Neisseria gonorrhoeae 485 species 1 0 487 182 Neisseria meningitidis 0 1 species 0 1 species 488 36 Neisseria mucosa 495 32 Neisseria elongata 0 1 species 490 42 Neisseria sicca 0 species 1 168 1193515 1 genus 0 1 species 0 168 Snodgrassella alvi 1196083 0 genus 1 538 67 species 1 0 Eikenella corrodens 67 539 71 Simonsiella 1 1 124 0 2 genus 0 species 1 72 123 Simonsiella muelleri 421605 294 0 1 no rank species 1 0 Neisseriaceae bacterium DSM 100970 294 2052837 0 3 genus 59 Vitreoscilla 1 1 172 63 Vitreoscilla filiformis 59 0 species 1 2627922 112 0 1 no rank 96942 112 Vitreoscilla sp. C1 0 species 1 206389 1 1117 8 Rhodocyclales 0 order 20 86 2008795 2 family 0 2 genus 0 Dechloromonas 4 1 86 73029 species 1 0 82 Dechloromonas aromatica 259537 Zoogloeaceae 15 1 824 2008794 12 family 0 1 352 Azoarcus 9 12960 5 genus 0 2067960 81 Azoarcus sp. SY39 0 species 1 1 species 0 Azoarcus olearius 78 418699 2629479 184 0 2 no rank 748247 76 Azoarcus sp. KH32C 0 species 1 198107 108 Azoarcus sp. CIB 0 1 species 0 genus 6 33057 7 Thauera 1 457 no rank 2 0 197 2609274 species 1 0 95 Thauera sp. K11 2005884 85643 Thauera sp. MZ1T 102 0 1 species 0 species 1 1134435 83 Thauera humireducens 59405 78 Thauera aromatica 0 species 1 0 1 species 96773 Thauera chlorobenzoica 92 199 75787 5 family 0 2 genus 0 1 74 Aromatoleum 1 551759 551760 Aromatoleum aromaticum 73 0 1 species 50 75788 1 no rank 0 1898103 Rhodocyclaceae bacterium 50 0 species 1 0 genus 2 146937 1 Azospira 75 1 species 1 0 Azospira oryzae 74 146939 subphylum 176 0 25888 68525 Deltaproteobacteria 18 8730 1 28221 106 class 0 0 23 order 69541 1 1494 Desulfuromonadales 14 0 13 family 213422 Geobacteraceae 6 1009 1 genus 1 0 77 392332 1 species 0 77 Geoalkalibacter subterraneus 483547 28231 12 Geobacter 926 1 0 genus 11 351604 239 Geobacter uraniireducens 0 species 1 0 1 species 35554 Geobacter sulfurreducens 44 2627627 184 0 2 no rank species 1 0 112 Geobacter sp. M18 443143 0 1 species 443144 72 Geobacter sp. M21 0 species 1 345632 52 Geobacter pickeringii 0 1 species 1340425 53 Geobacter anodireducens Geobacter lovleyi 70 313985 1 species 0 Geobacter bemidjiensis 68 225194 1 species 0 0 1 species 1203471 Geobacter daltonii 59 28232 145 Geobacter metallireducens 0 1 species 0 9 family 213421 Desulfuromonadaceae 2 471 1 222 1 Desulfuromonas 3 890 3 genus 0 141 Desulfuromonas soudanensis 1603606 species 1 0 0 no rank 1 2614637 78 0 1 species 1823759 78 Desulfuromonas sp. DDH964 Pelobacter 2 1 247 18 5 genus 0 63 2620299 1 no rank 0 species 1 0 63 Pelobacter sp. SFB93 1842532 0 1 species 29543 65 Pelobacter propionicus 51 Pelobacter acetylenicus 29542 species 1 0 19 Pelobacter carbinolicus 66 0 species 1 74 453227 3 order 0 1 74 3 Desulfarculaceae 453228 family 3 0 0 genus 2 453229 71 1 1 Desulfarculus 453230 70 Desulfarculus baarsii 0 1 species 0 order 22 213115 8 Desulfovibrionales 1315 1 97 213116 family 2 0 0 2 genus 898 97 899 Desulfomicrobium baculatum 56 0 1 species 1 species 0 41 Desulfomicrobium orale 132132 Desulfovibrionaceae 6 1156 1 194924 17 family 0 1 genus 0 49 2582840 Desulfovibrio africanus 49 873 species 1 0 2794998 120 0 1 genus Desulfovibrio salexigens 120 880 species 1 0 Pseudodesulfovibrio 2 176 1 2035811 4 genus 0 57320 61 Pseudodesulfovibrio profundus 0 species 1 42 Pseudodesulfovibrio indicus 1716143 1 species 0 species 1 0 Pseudodesulfovibrio aespoeensis 71 182210 0 genus 9 872 1 507 6 Desulfovibrio Desulfovibrio alaskensis 54 58180 species 1 0 18 Candidatus Desulfovibrio trichonymphae 1725232 1 species 0 21 2593640 1 no rank 0 species 1 0 Desulfovibrio sp. G11 21 631220 0 1 species 876 Desulfovibrio desulfuricans 68 184917 Desulfovibrio magneticus 100 0 1 species 1 species 0 169 Desulfovibrio vulgaris 881 species 1 0 32 Desulfovibrio fairfieldensis 44742 1 species 0 Desulfovibrio piger 39 901 0 genus 1 41707 298 species 1 0 298 Lawsonia intracellularis 29546 213117 54 0 2 family 2 genus 0 Desulfohalobium 3 54 1 45662 Desulfohalobium retbaense 51 45663 1 species 0 29 3720 1 Myxococcales 41 0 30 order 0 20 suborder 80811 2200 31 954 1 Myxococcaceae 3 0 9 family 0 3 genus 83461 Corallococcus 4 284 1 species 1 0 189 Corallococcus coralloides 184914 35 91 Myxococcus macrosporus 0 species 1 0 5 genus 32 Myxococcus 20 1 667 Myxococcus xanthus 101 34 1 species 0 33 Myxococcus fulvus 253 0 species 1 0 1 species 83455 Myxococcus stipitatus 139 Myxococcus hansupus 154 1297742 species 1 0 86 1524213 1 family 0 1524214 86 0 1 genus 0 1 species 1391653 Vulgatibacter incomptus 86 family 4 0 370 1524215 0 genus 4 161492 6 Anaeromyxobacter 1 370 no rank 2 0 210 2620896 species 1 0 121 Anaeromyxobacter sp. Fw109-5 404589 Anaeromyxobacter sp. K 89 447217 species 1 0 161493 Anaeromyxobacter dehalogenans 154 0 species 1 0 6 family 39 Archangiaceae 8 1 790 172 42 1 genus 0 1 species 0 172 Cystobacter fuscus 43 0 1 genus 40 116 species 1 0 116 Stigmatella aurantiaca 41 1 genus 0 372 47 species 1 0 Archangium gephyra 372 48 44 122 1 1 Melittangium 0 genus 2 species 1 0 121 Melittangium boletus 83453 80812 1157 0 6 suborder 2 family 0 211 1055686 1055688 1 Sandaracinus 1 211 0 genus 2 927083 Sandaracinus amylolyticus 210 0 1 species 0 family 4 49 1 Polyangiaceae 946 1 0 2 genus 39643 1 722 Sorangium 4 Sorangium cellulosum 718 56 1 species 0 223 50 1 genus 0 Chondromyces crocatus 223 52 1 species 0 224462 322 0 suborder 3 0 3 family 224464 322 1 Kofleriaceae 1 0 genus 2 162027 3 Haliangium 321 1 0 1 species 80816 Haliangium ochraceum 318 213118 1387 1 Desulfobacterales 14 0 14 order 0 family 8 213119 3 Desulfobacteraceae 1004 1 389 218207 genus 1 0 0 species 1 259354 389 Desulfatibacillum alkenivorans 0 1 genus 2295 106 2296 Desulfobacterium autotrophicum 106 0 species 1 0 2 genus 28222 319 1 Desulfobacula 2 28223 317 Desulfobacula toluolica 0 species 1 genus 3 0 1 Desulfococcus 187 1 896 species 1 0 Desulfococcus multivorans 58 897 1 species 0 128 Desulfococcus oleovorans 181663 0 5 family 213121 1 369 Desulfobulbaceae 9 53318 117 0 1 genus species 1 0 Desulfocapsa sulfexigens 117 65555 427922 67 0 genus 1 1 species 0 67 Desulfurivibrio alkaliphilus 427923 genus 1 0 54 893 0 1 species 1986146 54 Desulfobulbus sp. ORNL 0 genus 1 109168 122 0 species 1 84980 122 Desulfotalea psychrophila 0 order 9 213462 1 251 6 Syntrophobacterales 5 family 0 Syntrophaceae 2 178 1 213468 60892 42 0 1 genus 42 Desulfobacca acetoxidans 60893 1 species 0 Syntrophus 1 55 1 43773 2 genus 0 0 species 1 316277 Syntrophus aciditrophicus 54 0 genus 1 2357 79 species 1 0 Desulfomonile tiedjei 79 2358 67 1 2 Syntrophobacteraceae 213465 family 3 0 65 1 1 Syntrophobacter 29526 genus 2 0 119484 Syntrophobacter fumaroxidans 64 0 1 species order 4 0 471 213113 117942 3 Desulfurellaceae 1 471 0 family 4 genus 2 0 2 Hippea 164 1 84404 162 Hippea maritima 84405 1 species 0 33001 304 0 genus 1 304 Desulfurella acetivorans 33002 1 species 0 29547 Epsilonproteobacteria 5 17158 1 0 70 class 64 order 0 Campylobacterales 34 1 16650 213849 2771471 500 0 family 4 genus 3 0 1 Sulfurimonas 1 448 202746 0 species 1 202747 Sulfurimonas autotrophica 192 Sulfurimonas denitrificans 255 39766 species 1 0 1 genus 0 52 286130 1 species 0 Sulfuricurvum kujiense 52 148813 276 2771472 family 4 0 3 Sulfurovum 196 1 265570 genus 3 0 0 1 no rank 2646778 110 0 1 species 387093 Sulfurovum sp. NBC37-1 110 1 species 0 83 Sulfurovum lithotrophicum 206403 269260 80 0 genus 1 269261 Nitratifractor salsuginis 80 0 1 species family 41 0 19 Campylobacteraceae 1 13661 72294 0 genus 9 57665 1 1055 19 Sulfurospirillum Sulfurospirillum barnesii 128 44674 species 1 0 1 species 0 Sulfurospirillum deleyianum 128 65553 0 1 species 366522 Sulfurospirillum cavolei 60 96 Sulfurospirillum multivorans 66821 1 species 0 0 no rank 3 2618290 513 1581011 Sulfurospirillum sp. UCH001 198 0 species 1 species 1 0 157 Sulfurospirillum sp. SL2-1 1986224 species 1 0 158 Sulfurospirillum sp. JPD-1 220622 194424 Sulfurospirillum halorespirans 111 0 1 species 0 no rank 5 2321108 3770 898 2321187 1 genus 0 species 1 0 Arcobacter sp. LPB0137 898 1850254 2321207 915 0 1 no rank species 1 0 915 Arcobacter sp. L 944547 0 genus 3 28196 21 Arcobacter 1 1957 28199 Arcobacter nitrofigilis 778 0 species 1 species 1 0 Arcobacter butzleri 1158 28197 genus 26 0 66 Campylobacter 1 8817 194 0 species 1 197 Campylobacter jejuni 831 Campylobacter coli 674 195 1 species 0 343 Campylobacter peloridis 488546 species 1 0 303 Campylobacter cuniculorum 374106 species 1 0 1965231 559 Campylobacter pinnipediorum 0 1 species species 1 0 Campylobacter insulaenigrae 459 260714 1 species 0 Campylobacter helveticus 148 28898 Campylobacter iguaniorum 186 1244531 species 1 0 180 Campylobacter lanienae 75658 species 1 0 0 species 1 196 Campylobacter fetus 304 1002 Campylobacter lari 201 species 1 0 55 Campylobacter curvus 200 species 1 0 species 1 0 Campylobacter gracilis 44 824 497724 376 Campylobacter subantarcticus 0 1 species 198 241 Campylobacter hyointestinalis 0 1 species 0 species 1 522485 Campylobacter avium 230 76517 Campylobacter hominis 227 0 species 1 1 species 0 Campylobacter ureolyticus 457 827 species 1 0 194 Campylobacter concisus 199 206 Campylobacter sputorum 562 0 1 species 1000 2593542 no rank 4 0 1660076 Campylobacter sp. RM12175 246 0 species 1 1 species 0 Campylobacter sp. RM16704 383 1500960 1 species 0 139 Campylobacter sp. RM6137 1660073 0 1 species 1660074 232 Campylobacter sp. RM8964 species 1 0 376 Campylobacter volucris 1031542 14 family 0 2179 1 Helicobacteraceae 5 72293 843 53 0 1 genus Wolinella succinogenes 53 844 species 1 0 209 8 Helicobacter 1 2121 0 genus 12 0 1 species 138563 Helicobacter cetorum 246 0 species 1 1591088 58 Helicobacter himalayensis 137 Helicobacter bilis 37372 1 species 0 217 Helicobacter mustelae 91 0 species 1 0 species 1 214 Helicobacter felis 43 0 species 1 32025 153 Helicobacter hepaticus 71 Helicobacter acinonychis 212 species 1 0 0 species 1 213 Helicobacter cinaedi 112 1 no rank 0 74 2593540 0 species 1 222136 74 Helicobacter sp. MIT 01-6242 0 1 species 76936 Helicobacter typhlonius 92 210 Helicobacter pylori 1036 0 species 1 0 order 5 235899 503 2795691 126 0 2 family 0 genus 2 269258 126 1 2 Nitratiruptor no rank 1 0 124 2624044 0 species 1 387092 124 Nitratiruptor sp. SB155-2 Nautiliaceae 1 377 1 224467 3 family 0 191291 Nautilia 1 376 1 0 2 genus 244787 Nautilia profundicola 375 0 1 species class 555 0 1 134799 87 Alphaproteobacteria 28211 0 order 6 2800060 701 0 6 family 69657 Hyphomonadaceae 15 1 701 0 genus 2 2723 1 353 2 Hirschia 0 1 species 2724 Hirschia baltica 351 0 3 genus 85 Hyphomonas 5 1 333 no rank 1 0 233 2630699 1906738 Hyphomonas sp. Mor2 233 0 species 1 81032 Hyphomonas neptunium 95 0 species 1 81 order 0 Sphingomonadales 34 6604 1 204457 family 58 0 5066 1 56 Sphingomonadaceae 41297 72173 1 87 5 Citromicrobium 0 genus 2 1 no rank 0 82 2630544 Citromicrobium sp. JL477 82 1634516 1 species 0 329 541 genus 1 0 0 species 1 542 329 Zymomonas mobilis 0 genus 2 150203 1 Blastomonas 1 113 0 1 no rank 2626550 112 0 1 species 1842535 Blastomonas sp. RAC04 112 0 genus 3 1434046 1 212 5 Sphingorhabdus no rank 2 0 207 2614947 1 species 0 108 Sphingorhabdus sp. YGSMI21 2077182 species 1 0 Sphingorhabdus sp. M41 99 1806885 genus 5 0 9 Novosphingobium 364 1 165696 2644732 88 0 1 no rank 0 1 species 702113 Novosphingobium sp. PP1Y 88 158500 107 Novosphingobium resinovorum 0 1 species 96 Novosphingobium pentaromativorans 205844 1 species 0 48935 64 Novosphingobium aromaticivorans 0 species 1 Sphingopyxis 31 1 910 165697 10 genus 0 species 1 0 55 Sphingopyxis terrae 33052 79 Sphingopyxis alaskensis 117207 1 species 0 0 species 1 267128 71 Sphingopyxis granuli 0 species 1 33050 Sphingopyxis macrogoltabida 133 2614943 480 0 no rank 4 0 species 1 1913578 Sphingopyxis sp. LPB0140 240 84 Sphingopyxis sp. QXT-31 1357916 species 1 0 1 species 0 79 Sphingopyxis sp. 113P3 292913 species 1 0 77 Sphingopyxis sp. MG 1866325 61 Sphingopyxis fribergensis 1515612 species 1 0 99 1 2 Rhizorhabdus 1649486 genus 2 0 97 Rhizorhabdus dicambivorans 1850238 species 1 0 60 Sphingobium 1063 1 165695 genus 15 0 Sphingobium cloacae 65 120107 1 species 0 1 species 0 103 Sphingobium yanoikuyae 13690 Sphingobium herbicidovorans 60 76947 species 1 0 0 species 1 46429 Sphingobium chlorophenolicum 52 1 species 0 Sphingobium hydrophobicum 76 1673076 species 1 0 74 Sphingobium japonicum 332056 no rank 6 0 458 2611147 1843368 76 Sphingobium sp. RAC03 0 1 species 0 1 species 484429 Sphingobium sp. YBL2 57 1855519 70 Sphingobium sp. EP60837 0 species 1 1 species 0 Sphingobium sp. TKS 98 1315974 Sphingobium sp. MI1205 83 407020 1 species 0 627192 Sphingobium sp. SYK-6 74 0 species 1 332055 Sphingobium indicum 71 0 1 species 0 1 species 1332080 Sphingobium baderi 44 42 Sphingomonas 1 1649 13687 genus 15 0 160791 137 Sphingomonas wittichii 1 259 0 species 2 Sphingomonas sp. DC-6 122 1283312 strain 1 0 79 Sphingomonas panacis 1560345 species 1 0 1549858 Sphingomonas taxi 96 0 species 1 6 no rank 0 802 196159 species 1 0 Sphingomonas sp. LM7 57 1938607 745310 82 Sphingomonas sp. MM-1 0 1 species 1 species 0 Sphingomonas sp. KC8 55 1030157 1327635 Sphingomonas sp. Cra20 73 0 species 1 Sphingomonas sp. NIC1 84 1961362 1 species 0 0 1 species 1390395 451 Sphingomonas sp. LK11 152682 83 Sphingomonas melonis 0 species 1 93064 62 Sphingomonas koreensis 0 species 1 0 species 1 1609977 Sphingomonas hengshuiensis 90 Sphingomonas sanxanigenens 136 397260 1 species 0 2709685 103 0 1 genus 266812 103 Sphingorhabdus flavimaris 0 species 1 0 genus 1 2685927 81 0 species 1 1921510 Sphingomonas sp. JJ-A5 81 335929 32 Erythrobacteraceae 1504 1 0 family 22 2800685 43 0 genus 1 Altererythrobacter marensis 43 543877 species 1 0 genus 4 0 1 216 35 Altererythrobacter 361177 1 species 0 Altererythrobacter epoxidivorans 54 361183 Altererythrobacter ishigakiensis 72 476157 species 1 0 species 1 0 55 Altererythrobacter atlanticus 1267766 0 6 no rank 2800788 482 1 301 32 Erythrobacter 1041 genus 3 0 species 1 0 Erythrobacter litoralis 184 39960 species 1 0 85 Porphyrobacter neustonensis 1112 1111 9 Porphyrobacter 1 181 0 genus 3 172 2683265 2 no rank 0 0 1 species 2023229 Porphyrobacter HT-58-2 88 0 1 species 1896196 84 Porphyrobacter sp. LM 6 271 2800681 genus 2 0 0 1 species 1648404 Erythrobacter atlanticus 146 Erythrobacter gangjinensis 125 502682 1 species 0 90 2800686 2 genus 0 30 Altererythrobacter mangrovi 1982042 1 species 0 species 1 0 Altererythrobacter dongtanensis 60 692370 genus 1 0 97 2800682 1 species 0 97 Altererythrobacter namhicola 645517 Croceicoccus 9 1 151 1295327 3 genus 0 Croceicoccus marinus 91 450378 species 1 0 1348774 51 Croceicoccus naphthovorans 0 1 species 0 genus 2 1855416 122 0 1 species 266951 61 Erythrobacter seohaensis 61 Erythrobacter flavus 192812 species 1 0 210 order 0 23782 1 Rhizobiales 122 356 1 461 Aurantimonadaceae 3 255475 7 family 0 111 1 Aureimonas 4 414371 2 genus 0 2615206 107 0 1 no rank 0 species 1 1349819 Aureimonas sp. AU20 107 4 genus 0 347 1 Martelella 13 293088 0 1 species 293089 120 Martelella mediterranea no rank 1 0 120 2629616 Martelella sp. AD-3 120 686597 1 species 0 Martelella endophytica 94 1486262 1 species 0 26 family 0 3078 1 Bradyrhizobiaceae 25 41294 1 671 Rhodopseudomonas 2 1073 2 genus 0 1 species 0 Rhodopseudomonas palustris 669 1076 911 Nitrobacter 5 162 1 0 3 genus 912 94 Nitrobacter hamburgensis 0 species 1 913 Nitrobacter winogradskyi 63 0 species 1 1 82 Variibacter 2 1649510 2 genus 0 0 species 1 1333996 80 Variibacter gotjawalensis 85413 1 516 17 Bosea 0 genus 5 0 3 no rank 2653178 362 119 Bosea sp. PAMC 26642 1792307 species 1 0 species 1 0 Bosea sp. RAC05 122 1842539 species 1 0 Bosea sp. AS-1 121 2015316 species 1 0 137 Bosea vaviloviae 1526658 1512 1 49 Bradyrhizobium 374 genus 11 0 2631580 767 0 6 no rank species 1 0 Bradyrhizobium sp. CCGE-LA001 100 1223566 species 1 0 184 Bradyrhizobium sp. ORS 278 114615 0 species 1 376 127 Bradyrhizobium sp. 0 1 species 288000 115 Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. ORS 285 103 115808 species 1 0 Bradyrhizobium sp. SK17 138 2057741 species 1 0 1274631 Bradyrhizobium icense 109 0 species 1 1355477 251 Bradyrhizobium diazoefficiens 0 species 1 375 205 Bradyrhizobium japonicum 0 species 1 0 1 species 44255 Bradyrhizobium oligotrophicum 131 genus 2 0 3 Oligotropha 1 110 40136 species 1 0 107 Oligotropha carboxidovorans 40137 0 family 19 45401 9 Hyphomicrobiaceae 1 1258 15 Hyphomicrobium 1 366 81 genus 4 0 0 species 1 53399 113 Hyphomicrobium denitrificans 1427356 Hyphomicrobium nitrativorans 84 0 species 1 154 2619925 no rank 1 0 717785 154 Hyphomicrobium sp. MC1 0 1 species 2 genus 0 Filomicrobium 6 1 99 119044 1608628 Candidatus Filomicrobium marinum 93 0 species 1 genus 2 0 2 Blastochloris 1 102 59282 1079 100 Blastochloris viridis 0 1 species 0 2 genus 1082930 98 1 Pelagibacterium 2 531813 Pelagibacterium halotolerans 96 0 1 species 29407 Rhodoplanes 7 1 135 0 2 genus 128 2619116 1 no rank 0 128 Rhodoplanes sp. Z2-YC6860 674703 1 species 0 1068 1 Rhodomicrobium 86 1 0 genus 2 85 Rhodomicrobium vannielii 1069 1 species 0 0 genus 4 46913 1 363 9 Devosia 196773 354 0 no rank 3 Devosia sp. I507 94 2083786 1 species 0 species 1 0 Devosia sp. A16 134 1736675 1 species 0 126 Devosia sp. H5989 1643450 6001 1 Rhizobiaceae 39 82115 55 family 0 3105 227290 no rank 36 0 0 27 genus 379 1 2199 Rhizobium 156 species 1 0 85 Rhizobium tropici 398 species 1 0 93 Rhizobium gallicum 56730 0 1 species 396 Rhizobium phaseoli 193 29449 261 Rhizobium etli 0 species 1 493 Rhizobium leguminosarum 384 species 1 0 no rank 21 0 918 2613769 1703969 57 Rhizobium sp. N324 0 1 species 1125847 Rhizobium sp. NT-26 73 0 1 species 1 species 0 2 Rhizobium sp. N1341 1703962 0 1 species 2020312 Rhizobium sp. CIAT894 65 0 species 1 1571470 Rhizobium sp. ACO-34A 94 14 Rhizobium sp. TAL182 2020313 1 species 0 0 species 1 1914541 Rhizobium sp. Y9 72 2020311 Rhizobium sp. Kim5 68 0 species 1 1 species 0 56 Rhizobium sp. NXC14 1981173 species 1 0 99 Rhizobium sp. 10195 2028343 73 Rhizobium sp. IRBG74 424182 species 1 0 0 species 1 1703964 1 Rhizobium sp. N621 2 Rhizobium sp. N113 1703960 1 species 0 63 Rhizobium sp. S41 1869170 1 species 0 1703967 Rhizobium sp. N741 3 0 1 species species 1 0 10 Rhizobium sp. N731 1703966 0 species 1 1703961 10 Rhizobium sp. N1314 1301032 Rhizobium sp. IE4771 67 0 1 species 1703965 Rhizobium sp. N6212 1 0 species 1 1703968 Rhizobium sp. N871 3 0 1 species 0 1 species 2048897 85 Rhizobium sp. NXC24 20 Agrobacterium 1 774 357 genus 7 0 373 92 Agrobacterium vitis 0 1 species no rank 2 0 162 2632611 1842536 92 Agrobacterium sp. RAC06 0 1 species 70 Agrobacterium sp. H13-3 861208 1 species 0 438 1183400 2 species group 0 species 1 0 Agrobacterium fabrum 81 1176649 1 species 0 357 Agrobacterium tumefaciens 358 1 species 0 62 Agrobacterium rhizogenes 359 1525371 2 Neorhizobium 132 1 0 genus 2 species 1 0 Neorhizobium galegae 130 399 10 no rank 0 1109 227292 0 7 genus 28105 Sinorhizobium 29 874 1 Sinorhizobium medicae 80 110321 1 species 0 2613772 198 0 no rank 2 113 Sinorhizobium sp. RAC02 1842534 species 1 0 species 1 0 85 Sinorhizobium sp. CCBAU 05631 794846 96 Sinorhizobium americanum 194963 1 species 0 1 species group 0 256 663276 380 256 Sinorhizobium fredii 0 species 1 Sinorhizobium meliloti 215 382 1 species 0 genus 3 0 3 Ensifer 1 235 106591 106592 146 Ensifer adhaerens 0 1 species 1 species 0 Ensifer sojae 86 716925 0 genus 6 34019 1621 1 37 Liberibacter 1 species 0 Candidatus Liberibacter africanus 311 34020 1273132 410 Liberibacter crescens 0 species 1 species 1 0 Candidatus Liberibacter americanus 370 309868 1 species 0 Candidatus Liberibacter solanacearum 260 556287 0 species 1 34021 Candidatus Liberibacter asiaticus 233 genus 2 0 3 Shinella 127 1 323620 no rank 1 0 124 2643062 879274 124 Shinella sp. HZN7 0 species 1 366 1 5 Xanthobacteraceae 335928 family 7 0 119 1 Starkeya 3 152053 2 genus 0 0 species 1 921 Starkeya novella 116 Xanthobacter 3 1 137 279 2 genus 0 0 species 1 280 134 Xanthobacter autotrophicus genus 2 0 105 1 4 Azorhizobium 6 0 species 1 7 101 Azorhizobium caulinodans 69277 1 1922 Phyllobacteriaceae 12 0 19 family 1 129 1 Nitratireductor 245876 genus 2 0 472175 Nitratireductor basaltis 128 0 species 1 0 9 genus 68287 Mesorhizobium 49 1 1273 2066070 153 Mesorhizobium japonicum 0 species 1 1 species 0 Mesorhizobium australicum 142 536018 0 species 1 381 Mesorhizobium loti 167 71433 135 Mesorhizobium amorphae 0 species 1 138 Mesorhizobium opportunistum 593909 1 species 0 0 1 no rank 325217 170 170 Mesorhizobium sp. WSM1497 278153 1 species 0 species 1 0 Mesorhizobium sp. B7 127 1670800 39645 192 Mesorhizobium ciceri 0 1 species 5 Aminobacter 1 143 31988 genus 2 0 0 1 species 83263 138 Aminobacter aminovorans 0 genus 1 449972 82 82 2643807 1 no rank 0 Chelativorans sp. BNC1 82 266779 1 species 0 0 genus 2 28100 2 Phyllobacterium 1 140 0 1 species 1867719 Phyllobacterium zundukense 138 274591 3 Hoeflea 1 143 0 genus 2 2614931 140 0 no rank 1 Hoeflea sp. IMCC20628 140 1620421 species 1 0 31993 1 294 Methylocystaceae 6 0 6 family genus 3 0 1 189 12 Methylocystis 133 97 2625913 1 no rank 0 1 species 0 97 Methylocystis sp. SC2 187303 0 species 1 655015 Methylocystis bryophila 80 genus 2 0 4 Methylosinus 99 1 425 1 species 0 Methylosinus trichosporium 95 426 119045 1708 1 17 Methylobacteriaceae 0 family 15 407 872 1 Methylobacterium 48 0 9 genus 1 species 0 Methylobacterium oryzae 89 334852 no rank 3 0 290 2615210 1479019 86 Methylobacterium sp. C1 0 species 1 1 species 0 Methylobacterium sp. AMS5 72 925818 species 1 0 Methylobacterium sp. 4-46 132 426117 0 species 1 418223 Methylobacterium phyllosphaerae 95 114616 Methylobacterium nodulans 122 0 1 species species 1 0 Methylobacterium radiotolerans 101 31998 0 1 species 270351 Methylobacterium aquaticum 127 genus 3 0 712 2282523 223967 Methylobacterium populi 185 0 species 1 0 1 species 408 Methylobacterium extorquens 444 0 species 1 29429 Methylobacterium zatmanii 83 186650 107 1 Microvirga 3 0 2 genus 1 species 0 104 Microvirga ossetica 1882682 0 3 family 119043 Rhodobiaceae 3 1 158 0 genus 2 256616 1 155 1 Parvibaculum 256618 Parvibaculum lavamentivorans 154 0 1 species 119042 427 0 6 no rank genus 2 0 176 1 6 Hartmannibacter 1572860 Hartmannibacter diazotrophicus 170 1482074 species 1 0 9 Methyloceanibacter 1 134 1484898 genus 2 0 125 Methyloceanibacter caenitepidi 1384459 species 1 0 1734920 1 117 Pseudorhodoplanes 5 0 2 genus 1 species 0 Pseudorhodoplanes sinuspersici 112 1235591 family 4 0 3 Chelatococcaceae 270 1 2036754 genus 3 0 267 1 12 Chelatococcus 28209 no rank 1 0 144 2638111 0 1 species 1702325 Chelatococcus sp. CO-6 144 111 Chelatococcus daeguensis 444444 1 species 0 772 4 Bartonellaceae 1 6629 0 family 18 17 genus 0 Bartonella 149 1 6625 773 1 species 0 388 Bartonella ancashensis 1318743 33045 Bartonella grahamii 412 0 species 1 1 species 0 297 Bartonella apis 1686310 no rank 6 0 2770 2645622 465 Bartonella sp. 1-1C 515256 species 1 0 0 species 1 1933907 454 Bartonella sp. JB63 Bartonella sp. Raccoon60 465 1933912 species 1 0 480 Bartonella sp. A1379B 1933910 species 1 0 454 Bartonella sp. JB15 1933906 1 species 0 Bartonella sp. WD16.2 452 1933904 species 1 0 85701 Bartonella tribocorum 394 0 species 1 0 1 species 774 Bartonella bacilliformis 460 56426 Bartonella clarridgeiae 474 0 species 1 0 1 species 803 325 Bartonella quintana species 1 0 Bartonella vinsonii 346 33047 0 1 species 388640 252 Bartonella australis 358 Bartonella henselae 38323 1 species 0 0 20 family 118882 902 1 Brucellaceae 2 528 Ochrobactrum 8 1 600 0 5 genus 571256 180 Ochrobactrum pituitosum 0 1 species 95 Ochrobactrum anthropi 529 1 species 0 Ochrobactrum pseudogrignonense 175 419475 1 species 0 142 Ochrobactrum sp. A44 271865 1 species 0 genus 14 0 300 1 113 Brucella 234 71 2632610 4 no rank 0 species 1 0 5 Brucella sp. 2002734562 1891098 species 1 0 24 Brucella sp. 09RB8910 1844051 0 species 1 1149952 Brucella sp. 09RB8471 19 1885919 23 Brucella sp. 141012304 0 1 species Brucella pinnipedialis 13 120576 species 1 0 13 Brucella ceti 120577 species 1 0 0 species 1 29461 Brucella suis 33 Brucella vulpis 10 981386 species 1 0 Brucella abortus 16 235 1 species 0 1 species 0 8 Brucella melitensis 29459 13 Brucella canis 36855 species 1 0 species 1 0 Brucella microti 7 444163 1 species 0 3 Brucella ovis 236 45404 186 0 family 4 genus 2 0 2 Methylocella 67 1 120652 0 species 1 199596 65 Methylocella silvestris 0 genus 2 532 1 Beijerinckia 1 119 Beijerinckia indica 118 533 species 1 0 82117 1331 0 no rank 8 213485 1 131 Micavibrio 2 0 2 genus 349221 129 Micavibrio aeruginosavorus 0 species 1 149 1 Phreatobacter 3 1632780 2 genus 0 0 species 1 1868589 Phreatobacter sp. S-12 146 62654 915 0 clade 2 genus 2 0 1 Candidatus Puniceispirillum 1 915 767891 1 species 0 Candidatus Puniceispirillum marinum 914 767892 991903 12 Polymorphum 136 1 0 genus 2 0 species 1 991904 Polymorphum gilvum 124 72384 1 6 Pelagibacterales 54526 order 9 0 2 genus 0 1 4490 Candidatus Fonsibacter 6 2045213 Candidatus Fonsibacter ubiquis 4484 1925548 species 1 0 1655514 18 Pelagibacteraceae 1 67888 0 family 6 2 no rank 0 38257 1655516 744985 4051 alpha proteobacterium HIMB59 0 species 1 species 1 0 34206 alpha proteobacterium HIMB5 859653 0 genus 3 198251 12 Candidatus Pelagibacter 29613 1 3995 2647897 no rank 1 0 0 1 species 1002672 Candidatus Pelagibacter sp. IMCC9063 3995 0 species 1 198252 25606 Candidatus Pelagibacter ubique 1 94 Magnetococcales 1 1191478 3 order 0 family 2 0 1 Magnetococcaceae 1 93 1191479 genus 1 0 92 162171 1 species 0 92 Magnetococcus marinus 1124597 766 10493 1 Rickettsiales 9 0 54 order 2 family 0 282 1328881 0 genus 2 411566 1 282 2 Candidatus Midichloria species 1 0 Candidatus Midichloria mitochondrii 280 234827 0 1 no rank 1699067 722 722 Rickettsiales bacterium Ac37b 1528098 1 species 0 942 5043 1 Anaplasmataceae 6 0 23 family 1 198 1 Anaplasma 768 genus 4 0 106179 82 0 1 species group species 1 0 82 Anaplasma phagocytophilum 948 769 60 Anaplasma centrale 0 1 species Anaplasma marginale 55 770 1 species 0 952 2258 0 tribe 8 genus 8 0 53 Wolbachia 2258 1 953 7 no rank 0 2205 2640676 Wolbachia endosymbiont of Onchocerca ochengi 241 100901 1 species 0 0 species 1 77038 594 Wolbachia endosymbiont of Drosophila simulans 246273 Wolbachia endosymbiont of Cimex lectularius 267 0 species 1 1 species 0 Wolbachia endosymbiont of Brugia malayi 307 80849 1 species 0 Wolbachia endosymbiont of Drosophila melanogaster 281 163164 0 1 species 66084 285 Wolbachia sp. wRi 0 species 1 77551 Wolbachia endosymbiont of Onchocerca volvulus 230 8 Ehrlichia 2215 1 943 genus 6 0 106178 1795 0 4 species group Ehrlichia muris 423 35795 species 1 0 779 521 Ehrlichia ruminantium 0 1 species 0 1 species 945 Ehrlichia chaffeensis 405 1 species 0 446 Ehrlichia canis 944 no rank 1 0 412 106181 0 1 species 391036 Ehrlichia sp. HF 412 33993 3 Neorickettsia 366 1 0 genus 4 species 1 0 112 Neorickettsia sennetsu 951 117 Neorickettsia helminthoeca 33994 species 1 0 Neorickettsia risticii 134 950 species 1 0 0 27 family 775 1 4437 Rickettsiaceae 2 305 2115980 genus 1 0 2115978 Candidatus Phycorickettsia trachydisci 305 0 1 species 4130 33988 tribe 25 0 genus 2 0 1 635 2 Orientia 69474 1 species 0 Orientia tsutsugamushi 633 784 1 3495 Rickettsia 288 780 23 genus 0 0 1 no rank 114295 377 337479 Rickettsia endosymbiont of Bemisia tabaci 377 0 species 1 0 species group 2 114292 816 1 species 0 397 Rickettsia prowazekii 782 1 species 0 Rickettsia typhi 419 785 1129742 702 0 2 species group 0 species 1 788 270 Rickettsia canadensis species 1 0 432 Rickettsia bellii 33990 0 17 species group 114277 1312 Rickettsia peacockii 94 47589 1 species 0 35790 48 Rickettsia japonica 0 1 species 109232 Rickettsia monacensis 193 0 1 species 226665 Rickettsia heilongjiangensis 42 0 1 species 0 species 1 35788 15 Rickettsia africae 1 species 0 229 Rickettsia felis 42862 1105106 22 Rickettsia philipii 0 1 species 35794 Rickettsia slovaca 22 0 species 1 35791 Rickettsia massiliae 31 0 species 1 0 species 1 787 Rickettsia australis 218 1 species 0 36 Rickettsia parkeri 35792 0 1 species 781 15 Rickettsia conorii 0 1 species 33992 Rickettsia rhipicephali 56 21 Rickettsia montanensis 33991 1 species 0 783 43 Rickettsia rickettsii 0 species 1 0 species 1 786 151 Rickettsia akari species 1 0 Rickettsia amblyommatis 76 33989 144 2800059 order 2 0 0 2 family 2800061 144 144 1 Maricaulis 7 74317 2 genus 0 0 1 species 74318 Maricaulis maris 137 10212 1 25 Rhodobacterales 204455 order 88 0 87 family 0 1 10187 Rhodobacteraceae 134 31989 genus 1 0 145 159345 0 species 1 159346 Roseibacterium elongatum 145 74030 7 Roseovarius 117 1 0 genus 2 110 Roseovarius mucosus 215743 1 species 0 340 263377 2 genus 0 2640570 154 0 no rank 1 species 1 0 Yangia sp. CCB-MM3 154 1792508 186 Thiobacimonas profunda 1229727 1 species 0 58840 264 0 2 no rank 129 Rhodobacteraceae bacterium 1904441 1 species 0 0 1 species 2033435 135 Rhodobacteraceae bacterium QY30 436357 2 Thalassococcus 0 genus 1 143 1649279 genus 1 0 Ruegeria mobilis 143 379347 species 1 0 0 genus 2 1759396 115 1 1 Marivivens 114 2622455 no rank 1 0 1920883 Marivivens sp. JLT3646 114 0 species 1 0 genus 4 34008 6 Rhodovulum 483 1 Rhodovulum sulfidophilum 225 35806 species 1 0 2631432 252 0 2 no rank 1564506 Rhodovulum sp. P5 117 0 1 species species 1 0 Rhodovulum sp. MB263 135 308754 0 genus 4 53945 465 1 6 Octadecabacter 53946 178 Octadecabacter arcticus 0 species 1 1217908 174 Octadecabacter antarcticus 0 1 species species 1 0 107 Octadecabacter temperatus 1458307 127 1 4 Pannonibacter 227873 genus 2 0 species 1 0 123 Pannonibacter phragmitetus 121719 1 191 3 Antarctobacter 74032 genus 2 0 74033 Antarctobacter heliothermus 188 0 1 species 0 genus 5 875170 630 1 8 Celeribacter species 1 0 195 Celeribacter manganoxidans 1411902 0 species 1 1397108 142 Celeribacter marinus 109 Celeribacter ethanolicus 1758178 species 1 0 0 1 species 1208324 Celeribacter indicus 176 1097466 1 184 Defluviimonas 1 0 2 genus 1 species 0 Defluviimonas alba 183 1335048 genus 1 0 149 119541 species 1 0 Rhodobaca barguzinensis 149 441209 171 2211641 1 genus 0 1 species 0 171 Loktanella vestfoldensis 245188 0 genus 1 245186 Loktanella 2 genus 2 0 2 Jannaschia 1 118 188905 no rank 1 0 116 2645469 0 species 1 290400 Jannaschia sp. CCS1 116 2433 351 1 Roseobacter 5 0 3 genus 0 species 1 42443 Roseobacter litoralis 170 Roseobacter denitrificans 176 2434 1 species 0 649 1 Rhodobacter 6 1060 5 genus 0 0 species 1 1061 Rhodobacter capsulatus 121 0 1 species 1063 Rhodobacter sphaeroides 270 no rank 2 0 252 196779 0 1 species 1850250 Rhodobacter sp. LPB0142 132 species 1 0 120 Rhodobacter sp. CZR27 2033869 genus 2 0 1 171 3 Sagittula 58842 2624628 168 0 1 no rank 2009329 168 Sagittula sp. P11 0 1 species 265 1018 1 19 Paracoccus 0 genus 9 Paracoccus sp. CBA4604 127 2065379 1 species 0 130 246570 1 no rank 0 0 1 species 1529068 Paracoccus sp. BM15 130 Paracoccus aminophilus 104 34003 species 1 0 0 1 species 147645 Paracoccus yeei 161 34004 Paracoccus aminovorans 121 0 1 species 0 species 1 1945662 Paracoccus contaminans 84 species 1 0 Paracoccus zhejiangensis 162 1077935 0 species 1 266 Paracoccus denitrificans 110 genus 2 0 1 Dinoroseobacter 1 164 309512 0 1 species 215813 Dinoroseobacter shibae 163 199 191028 genus 1 0 133924 Leisingera methylohalidivorans 199 0 species 1 299261 1 Tateyamaria 147 1 0 genus 2 0 1 species 299262 Tateyamaria omphalii 146 genus 3 0 237 1 6 Ketogulonicigenium 92944 125 Ketogulonicigenium vulgare 92945 species 1 0 0 1 species 92947 Ketogulonicigenium robustum 106 0 5 genus 302485 Phaeobacter 10 1175 1 0 species 1 221822 Phaeobacter inhibens 454 1 species 0 Phaeobacter gallaeciensis 320 60890 0 species 1 1580596 Phaeobacter piscinae 273 1844006 Phaeobacter porticola 118 0 species 1 1 234 2 Pelagibaca 360528 genus 2 0 0 1 species 1250539 Pelagibaca abyssi 232 0 2 genus 1579315 1 164 Halocynthiibacter 6 1 species 0 158 Halocynthiibacter arcticus 1579316 0 2 genus 97050 387 0 1 no rank 2625375 138 0 1 species 292414 Ruegeria sp. TM1040 138 249 Ruegeria pomeroyi 89184 species 1 0 2 genus 0 191 1 Confluentimicrobium 2 1609958 0 1 no rank 2643318 189 189 Confluentimicrobium sp. EMB200-NS6 1609966 species 1 0 1 456 Labrenzia 15 478070 4 genus 0 299 2648686 no rank 2 0 171 Labrenzia sp. VG12 2021862 1 species 0 1 species 0 128 Labrenzia sp. CP4 1674922 1 species 0 142 Labrenzia aggregata 187304 367771 Marinovum 1 196 1 0 2 genus 0 species 1 42444 195 Marinovum algicola genus 1 0 96 285107 1 species 0 96 Thioclava nitratireducens 1915078 0 genus 3 60136 1 351 7 Sulfitobacter species 1 0 163 Sulfitobacter pseudonitzschiae 1402135 no rank 1 0 181 196795 181 Sulfitobacter sp. AM1-D1 1917485 1 species 0 1 genus 0 221 1284657 Planktomarina temperata 221 1284658 species 1 0 63 order 0 1 6498 Rhodospirillales 37 204441 32 family 0 2354 1 Acetobacteraceae 16 433 1 Gluconacetobacter 86 1 89583 genus 2 0 Gluconacetobacter diazotrophicus 85 33996 1 species 0 0 genus 2 91914 1 60 3 Asaia species 1 0 57 Asaia bogorensis 91915 0 genus 3 522 1 217 4 Acidiphilium 101 Acidiphilium cryptum 524 species 1 0 Acidiphilium multivorum 112 62140 species 1 0 434 1 863 Acetobacter 7 0 8 genus 1076596 96 Acetobacter persici 0 1 species 104102 105 Acetobacter tropicalis 0 species 1 1 subgenus 0 56 151157 56 Acetobacter aceti 435 1 species 0 1 species 0 75 Acetobacter senegalensis 446692 345 Acetobacter pasteurianus 438 1 species 0 Acetobacter pomorum 81 65959 species 1 0 0 species 1 1633874 98 Acetobacter oryzifermentans 154 1 Gluconobacter 2 441 3 genus 0 0 species 1 318683 47 Gluconobacter albidus 0 species 1 442 105 Gluconobacter oxydans genus 3 0 1 268 4 Roseomonas 125216 Roseomonas gilardii 141 257708 species 1 0 0 1 no rank 2617492 123 123 Roseomonas sp. FDAARGOS_362 2018065 species 1 0 1 167 4 Granulibacter 364409 genus 2 0 species 1 0 163 Granulibacter bethesdensis 364410 0 genus 1 1602345 53 species 1 0 Parasaccharibacter apium 53 1510841 0 genus 1 153497 61 153496 61 Kozakia baliensis 0 species 1 320496 67 0 1 genus 0 1 species 320497 Neoasaia chiangmaiensis 67 1434011 10 Komagataeibacter 342 1 0 genus 5 28448 Komagataeibacter xylinus 126 0 species 1 0 species 1 265960 94 Komagataeibacter nataicola 0 species 1 1177712 59 Komagataeibacter medellinensis species 1 0 Komagataeibacter europaeus 53 33995 54 Rhodospirillaceae 4107 1 41295 family 30 0 0 genus 2 1612157 1 Pararhodospirillum 104 1 103 Pararhodospirillum photometricum 1084 species 1 0 Thalassospira 5 387 1 168934 3 genus 0 220697 Thalassospira xiamenensis 182 0 species 1 200 Thalassospira sp. CSC3H3 2048283 1 species 0 genus 5 0 746 1 41 Magnetospirillum 13134 345 2617991 2 no rank 0 Magnetospirillum sp. ME-1 182 1639348 1 species 0 163 Magnetospirillum sp. XM-1 1663591 species 1 0 191 Magnetospirillum gryphiswaldense 55518 species 1 0 169 Magnetospirillum magneticum 84159 species 1 0 2 genus 0 1 784 Candidatus Endolissoclinum 1 1263978 1 species 0 783 Candidatus Endolissoclinum faulkneri 1263979 1543704 1 Niveispirillum 1 143 0 genus 2 0 species 1 1612173 142 Niveispirillum cyanobacteriorum 0 2 genus 1182780 1 148 Magnetospira 2 no rank 1 0 146 2685734 0 species 1 1288970 Magnetospira sp. QH-2 146 1804663 119 0 1 genus Haematospirillum jordaniae 119 1549855 species 1 0 2 genus 0 Tistrella 4 1 205 171436 Tistrella mobilis 201 171437 1 species 0 3 genus 0 Rhodospirillum 5 1 314 1081 34018 182 Rhodospirillum centenum 0 species 1 Rhodospirillum rubrum 127 1085 species 1 0 Azospirillum 30 1 939 191 5 genus 0 1 species 0 Azospirillum thiophilum 190 528244 Azospirillum lipoferum 324 193 1 species 0 0 1 species 192 Azospirillum brasilense 288 1 species 0 107 Azospirillum humicireducens 1226968 0 2 genus 1543705 164 1 Nitrospirillum 3 0 species 1 28077 Nitrospirillum amazonense 161 0 order 20 204458 6 Caulobacterales 1371 1 0 19 family 76892 Caulobacteraceae 15 1 1365 81440 107 0 no rank 1 species 1 0 107 Caulobacteraceae bacterium OTSz_A_272 1759059 0 2 genus 76890 Asticcacaulis 10 1 91 0 species 1 78587 Asticcacaulis excentricus 81 Caulobacter 12 1 613 75 6 genus 0 88688 116 Caulobacter segnis 0 species 1 1 species 0 178 Caulobacter vibrioides 155892 Caulobacter mirabilis 96 69666 1 species 0 2648921 107 0 no rank 1 1 species 0 Caulobacter sp. K31 107 366602 104 Caulobacter henricii 69395 1 species 0 41275 12 Brevundimonas 1 436 0 genus 7 588932 Brevundimonas naejangsanensis 62 0 1 species 220 2622653 3 no rank 0 1532555 65 Brevundimonas sp. DS20 0 1 species species 1 0 54 Brevundimonas sp. GW460-12-10-14-LB2 1827469 1938605 Brevundimonas sp. LM2 101 0 species 1 1 species 0 Brevundimonas vesicularis 59 41276 74313 Brevundimonas subvibrioides 83 0 1 species 2 genus 0 1 103 Phenylobacterium 2 20 Phenylobacterium zucineum 101 284016 species 1 0 0 7 order 1921002 Holosporales 3 929 1 3 family 0 Candidatus Paracaedibacteraceae 3 247 1 1777752 2 genus 0 Candidatus Paracaedibacter 8 244 1 1521255 0 species 1 91604 Candidatus Paracaedibacter acanthamoebae 236 44746 348 0 family 1 348 204454 no rank 1 0 348 endosymbiont of Acanthamoeba sp. UWC8 86106 1 species 0 2 family 0 1 331 Caedimonadaceae 2 2100208 0 genus 1 1509243 329 0 1 species 1509244 329 Candidatus Nucleicultrix amoebiphila 1 Parvularculales 1 169 255473 order 3 0 168 255474 2 family 0 1 168 6 Parvularcula 208215 genus 2 0 208216 Parvularcula bermudensis 162 0 1 species Acidithiobacillia 1 261 1 1807140 7 class 0 225057 Acidithiobacillales 4 260 1 0 6 order 256 1 Acidithiobacillaceae 6 225058 5 family 0 250 1 4 Acidithiobacillus 119977 genus 4 0 Acidithiobacillus ferrivorans 70 160808 species 1 0 98 Acidithiobacillus caldus 33059 1 species 0 1 species 0 78 Acidithiobacillus ferrooxidans 920 1 1073 Oligoflexia 4 1553900 12 class 0 0 order 6 2024979 679 1 4 Bacteriovoracales Halobacteriovoraceae 2 453 1 1652132 3 family 0 2 genus 0 1 451 Halobacteriovorax 1 1652133 450 Halobacteriovorax marinus 97084 species 1 0 2 family 0 222 263369 0 genus 2 146784 1 Bacteriovorax 1 222 960 221 Bacteriovorax stolpii 0 1 species order 5 0 390 1 1 Bdellovibrionales 213481 389 1 3 Bdellovibrionaceae 213483 family 4 0 1 386 1 Bdellovibrio 958 genus 3 0 Bdellovibrio bacteriovorus 263 959 species 1 0 0 species 1 453816 Bdellovibrio exovorus 122 861 class 0 133337 1 Gammaproteobacteria 221 1236 order 35 0 4 Thiotrichales 10391 1 72273 34064 7697 1 Francisellaceae 6 0 15 family 12 genus 0 1 7289 Francisella 60 262 Francisella persica 336 954 1 species 0 0 species 1 573569 Francisella sp. TX077308 305 549298 1690 Francisella halioticida 0 1 species Francisella sp. TX077310 654 573570 1 species 0 622488 Francisella hispaniensis 378 0 1 species 0 2 no rank 2610885 752 0 1 species 475375 Francisella sp. MA067296 344 1547445 408 Francisella sp. FSC1006 0 species 1 1 species 0 Francisella sp. CA97-1460 490 1542390 0 species 1 263 Francisella tularensis 1086 species 1 0 656 Francisella noatunensis 657445 28110 Francisella philomiragia 882 0 species 1 Allofrancisella 2 402 1 1869285 2 genus 0 1 species 0 400 Allofrancisella guangzhouensis 594679 0 5 family 135617 1 666 Thiotrichaceae 8 0 2 genus 40751 Thioploca 6 308 1 1 species 0 302 Thioploca ingrica 40754 2 genus 0 350 1 Beggiatoa 3 1021 0 species 1 288004 347 Beggiatoa leptomitoformis 0 14 family 135616 Piscirickettsiaceae 5 2024 1 933 1 251 Thiomicrospira 3 0 3 genus Thiomicrospira cyclica 119 147268 species 1 0 0 species 1 92245 129 Thiomicrospira aerophila 4 genus 0 Cycloclasticus 14 964 1 34067 0 2 no rank 2621467 598 385025 279 Cycloclasticus sp. P1 0 1 species 0 species 1 728003 Cycloclasticus sp. PY97N 319 0 species 1 1329899 352 Cycloclasticus zancles 3 genus 0 Methylophaga 8 318 1 40222 170 Methylophaga nitratireducenticrescens 754476 species 1 0 0 species 1 754477 140 Methylophaga frappieri 28884 131 0 genus 1 131 Hydrogenovibrio crunogenus 39765 1 species 0 Piscirickettsia 1 355 1 1237 2 genus 0 1 species 0 354 Piscirickettsia salmonis 1238 order 2 0 125 135615 1 Cardiobacteriaceae 125 1 868 family 2 0 0 genus 1 869 124 870 Dichelobacter nodosus 124 0 species 1 0 13 order 135618 Methylococcales 3 1 852 403 849 1 6 Methylococcaceae 0 family 12 516 1 Methylomonas 19 416 5 genus 0 Methylomonas koyamae 81 702114 species 1 0 1 no rank 0 88 2608980 1 species 0 Methylomonas sp. DH-1 88 1727196 Methylomonas methanica 103 421 1 species 0 1 species 0 Methylomonas denitrificans 225 1538553 Methylococcus 1 1 51 413 2 genus 0 0 species 1 414 50 Methylococcus capsulatus 0 2 genus 762296 1 104 Methylovulum 1 103 Methylovulum psychrotolerans 1704499 species 1 0 172 1 3 Methylomicrobium 39773 genus 2 0 species 1 0 169 Methylomicrobium alcaliphilum 271065 0 54 order 135614 Xanthomonadales 37 6798 1 family 14 0 1 621 8 Rhodanobacteraceae 1775411 1 223 6 Dyella 231454 genus 4 0 0 species 1 231455 Dyella japonica 72 0 1 species 1379159 Dyella jiangningensis 74 1 species 0 Dyella thiooxydans 71 445710 0 genus 1 2233801 61 2021234 61 Xanthomonadales bacterium D13 0 1 species 242605 1 69 3 Luteibacter 0 genus 2 species 1 0 66 Luteibacter rhizovicinus 242606 0 genus 2 70411 1 Frateuria 1 59 species 1 0 58 Frateuria aurantia 81475 0 2 genus 323413 90 1 Dokdonella 3 0 species 1 323415 87 Dokdonella koreensis 2 genus 0 Rhodanobacter 2 1 111 75309 0 species 1 666685 109 Rhodanobacter denitrificans 32033 1 6140 64 Xanthomonadaceae 0 family 39 Pseudoxanthomonas 1 1 215 83618 3 genus 0 415229 55 Pseudoxanthomonas spadix 0 species 1 1 species 0 159 Pseudoxanthomonas suwonensis 314722 0 2 genus 83614 1 69 Luteimonas 1 1 species 0 Luteimonas sp. 100111 68 2006110 0 17 genus 338 1 3012 Xanthomonas 65 0 1 species 56459 Xanthomonas vasicola 44 339 Xanthomonas campestris 507 0 1 species 56460 127 Xanthomonas vesicatoria 0 1 species 1 species 0 63 Xanthomonas perforans 442694 0 species 1 343 Xanthomonas translucens 217 Xanthomonas axonopodis 47 53413 1 species 0 0 species 1 48664 155 Xanthomonas fragariae Xanthomonas euvesicatoria 96 456327 species 1 0 1985254 Xanthomonas phaseoli 66 0 species 1 0 1 species 56458 121 Xanthomonas sacchari species group 2 0 787 643453 0 1 species 366648 Xanthomonas fuscans 145 642 Xanthomonas citri 346 1 species 0 0 1 species 347 527 Xanthomonas oryzae 1 species 0 73 Xanthomonas hortorum 56454 0 1 species 366650 Xanthomonas alfalfae 56 Xanthomonas albilineans 61 29447 species 1 0 2370 Xylella 1 1 522 0 2 genus 0 1 species 2371 521 Xylella fastidiosa genus 9 0 27 Stenotrophomonas 1374 1 40323 0 species 1 83617 105 Stenotrophomonas nitritireducens species 1 0 Stenotrophomonas acidaminiphila 141 128780 0 4 no rank 196198 369 109 Stenotrophomonas sp. KCTC 12332 1793721 species 1 0 0 species 1 2005046 Stenotrophomonas sp. WZN-1 85 species 1 0 Stenotrophomonas sp. LM091 53 1904944 Stenotrophomonas sp. MYb57 122 1827305 species 1 0 676 995085 species group 1 0 40324 676 Stenotrophomonas maltophilia 0 species 1 216778 56 Stenotrophomonas rhizophila 0 1 species genus 5 0 2 Lysobacter 884 1 68 species 1 0 Lysobacter gummosus 169 262324 species 1 0 Lysobacter capsici 291 435897 69 92 Lysobacter enzymogenes 0 1 species Lysobacter antibioticus 330 84531 1 species 0 0 order 6 1692040 231 1 1 Acidiferrobacterales family 5 0 3 Acidiferrobacteraceae 230 1 1692041 1744881 1 99 3 Sulfuricaulis 0 genus 2 1 species 0 96 Sulfuricaulis limicola 1620215 1692042 128 1 Sulfurifustis 1 0 2 genus 127 Sulfurifustis variabilis 1675686 species 1 0 3 order 0 97 1934945 97 1 5 Immundisolibacteraceae 1934946 family 3 0 1934947 1 92 2 Immundisolibacter 0 genus 2 1 species 0 Immundisolibacter cernigliae 90 1810504 1775403 Nevskiales 6 1 99 0 3 order family 2 0 93 2689614 469322 2 Steroidobacter 1 93 0 genus 2 1 species 0 Steroidobacter denitrificans 91 465721 0 order 3 1240482 723 0 3 family 1240483 723 1 Orbaceae 4 385 1193503 1 genus 0 1196095 Gilliamella apicola 385 0 1 species genus 1 0 334 1335631 0 species 1 1267021 334 Frischella perrara no rank 2 0 198 33811 1248727 89 endosymbiont of unidentified scaly snail isolate Monju 0 species 1 83406 109 gamma proteobacterium HdN1 0 species 1 1 2824 11 Cellvibrionales 1706369 order 26 0 family 6 0 1 645 6 Spongiibacteraceae 1706375 1434050 9 Zhongshania 1 171 0 genus 2 1470434 Zhongshania aliphaticivorans 162 0 species 1 630749 1 Spongiibacter 182 1 0 genus 2 181 2631504 1 no rank 0 1 species 0 Spongiibacter sp. IMCC21906 181 1620392 0 genus 1 1084558 286 0 1 species 716816 286 Oceanicoccus sagamiensis 10 family 0 Cellvibrionaceae 9 1206 1 1706371 316625 181 0 1 genus Saccharophagus degradans 181 86304 1 species 0 352 2036021 genus 1 0 1 species 0 Agarilytica rhodophyticola 352 1737490 103 447467 genus 1 0 0 1 species 447471 103 Simiduia agarivorans 2425 1 155 Teredinibacter 2 0 2 genus 2426 153 Teredinibacter turnerae 0 1 species Cellvibrio 1 406 1 10 4 genus 0 155077 132 Cellvibrio japonicus 0 1 species 0 2 no rank 2624793 273 Cellvibrio sp. PSBB006 161 1987723 species 1 0 1 species 0 Cellvibrio sp. PSBB023 112 1945512 family 4 0 2 Halieaceae 534 1 1706372 1217416 1 532 10 Halioglobus 0 genus 3 0 species 1 930806 213 Halioglobus pacificus 309 Halioglobus japonicus 930805 1 species 0 0 family 5 1706373 428 1 5 Microbulbiferaceae 0 genus 4 48073 423 1 3 Microbulbifer 0 1 species 1769779 138 Microbulbifer aggregans 252514 Microbulbifer thermotolerans 133 0 species 1 149 Microbulbifer agarilyticus 260552 species 1 0 135625 1 4283 2 Pasteurellales 0 order 28 27 family 0 Pasteurellaceae 21 4281 1 712 0 genus 1 214906 240 Histophilus somni 240 731 species 1 0 6 genus 0 1 1519 Haemophilus 4 724 152 Haemophilus parainfluenzae 729 species 1 0 2609962 134 0 no rank 1 712310 134 Haemophilus sp. oral taxon 036 0 1 species 0 1 species 730 371 [Haemophilus] ducreyi 1 species 0 105 Haemophilus pittmaniae 249188 753 Haemophilus influenzae 727 species 1 0 5 genus 0 1 442 Actinobacillus 4 713 species 1 0 68 Actinobacillus succinogenes 67854 Actinobacillus suis 118 716 species 1 0 1 species 0 145 Actinobacillus pleuropneumoniae 715 Actinobacillus equuli 107 718 species 1 0 264 2094023 genus 1 0 Glaesserella parasuis 264 738 1 species 0 1 genus 0 184 476528 0 species 1 47735 Bibersteinia trehalosi 184 745 3 Pasteurella 1 698 0 genus 3 754 Pasteurella dagmatis 196 0 1 species 0 1 species 747 Pasteurella multocida 499 427 1 1 Mannheimia 75984 genus 4 0 1 species 0 Mannheimia varigena 158 85404 75985 161 Mannheimia haemolytica 0 1 species 1 no rank 0 107 2645054 1 species 0 Mannheimia sp. USDA-ARS-USMARC-1261 107 1432056 697331 Basfia 2 1 81 0 2 genus 79 [Mannheimia] succiniciproducens 157673 1 species 0 416916 281 0 genus 2 714 Aggregatibacter actinomycetemcomitans 139 0 species 1 Aggregatibacter aphrophilus 142 732 species 1 0 0 genus 1 155493 124 1 species 0 Gallibacterium anatis 124 750 6 Legionellales 4945 1 118969 order 20 0 4304 1 11 Legionellaceae 444 family 14 0 445 4073 1 Legionella 26 0 12 genus 1 species 0 Legionella oakridgensis 197 29423 species 1 0 Legionella waltersii 246 66969 0 species 1 450 379 Legionella longbeachae 449 243 Legionella hackeliae 0 1 species 0 1 species 446 1189 Legionella pneumophila species 1 0 Legionella sainthelensi 364 28087 0 1 species 2005262 438 Legionella endosymbiont of Polyplax serrata species 1 0 Legionella lansingensis 238 45067 1 species 0 135 Legionella spiritensis 452 Legionella clemsonensis 266 1867846 species 1 0 96230 352 Legionella fallonii 0 species 1 220 465 1 genus 0 0 species 1 451 Tatlockia micdadei 220 0 family 5 118968 11 Coxiellaceae 1 635 0 3 genus 776 422 1 Coxiella 1 0 1 species 777 Coxiella burnetii 201 2676648 220 0 no rank 1 0 1 species 325775 Coxiella endosymbiont of Amblyomma americanum 220 1 no rank 0 202 134284 0 species 1 1592897 202 Coxiella-like endosymbiont 72274 Pseudomonadales 57 20121 1 0 128 order 59 Pseudomonadaceae 10961 1 135621 family 85 0 286 255 Pseudomonas 10487 1 0 genus 80 198620 Pseudomonas koreensis 113 0 species 1 0 1 species 157782 114 Pseudomonas parafulva 114 Pseudomonas cerasi 1583341 1 species 0 6 species group 0 1345 136841 1 species 0 Pseudomonas alcaligenes 64 43263 0 species 1 300 Pseudomonas mendocina 291 species 1 0 96 Pseudomonas resinovorans 53412 156 Pseudomonas citronellolis 53408 species 1 0 287 578 Pseudomonas aeruginosa 0 species 1 160 1232139 species subgroup 1 0 1 species 0 160 Pseudomonas furukawaii 1149133 0 1 species 216142 Pseudomonas rhizosphaerae 71 196821 2037 0 no rank 30 0 species 1 1649877 68 Pseudomonas sp. CCOS 191 0 species 1 1534110 64 Pseudomonas sp. DR 5-09 69328 50 Pseudomonas sp. VLB120 0 1 species Pseudomonas sp. SWI6 40 2083051 species 1 0 1294143 Pseudomonas sp. ATCC 13867 67 0 species 1 1636610 54 Pseudomonas sp. PONIH3 0 species 1 69 Pseudomonas sp. NC02 2067572 species 1 0 42 Pseudomonas sp. FGI182 1259844 1 species 0 Pseudomonas sp. UW4 55 1207075 1 species 0 species 1 0 Pseudomonas sp. LG1D9 50 2083054 1283291 Pseudomonas sp. URMO17WK12:I11 161 0 1 species Pseudomonas sp. MRSN12121 63 1611770 1 species 0 1 species 0 101 Pseudomonas sp. TKP 1415630 1930532 Pseudomonas sp. CC6-YY-74 131 0 1 species 1 species 0 Pseudomonas sp. Os17 71 1500686 53 Pseudomonas sp. SWI36 2083052 species 1 0 Pseudomonas sp. S-6-2 97 1931241 species 1 0 1028989 Pseudomonas sp. StFLB209 83 0 species 1 0 species 1 1898684 Pseudomonas sp. LPH1 57 0 1 species 2083053 47 Pseudomonas sp. SWI44 52 Pseudomonas sp. LH1G9 2083055 1 species 0 1 species 0 Pseudomonas sp. HLS-6 67 2049589 1500687 Pseudomonas sp. St29 68 0 species 1 1856685 66 Pseudomonas sp. TCU-HL1 0 species 1 63 Pseudomonas sp. XWY-1 2069256 species 1 0 Pseudomonas sp. MYb193 44 1827300 1 species 0 1338689 Pseudomonas sp. JY-Q 47 0 species 1 0 1 species 2018067 44 Pseudomonas sp. FDAARGOS_380 0 species 1 1981174 Pseudomonas sp. M30-35 89 species 1 0 74 Pseudomonas sp. GR 6-02 1659194 0 2 species group 136846 644 0 1 species subgroup 578833 566 0 1 species 316 566 Pseudomonas stutzeri 0 1 species 74829 78 Pseudomonas balearica Pseudomonas knackmussii 90 65741 1 species 0 6 species group 0 1480 136845 1 species 0 43 Pseudomonas plecoglossicida 70775 303 814 Pseudomonas putida 0 1 species 1 species 0 Pseudomonas monteilii 195 76759 47885 Pseudomonas oryzihabitans 87 0 species 1 78327 217 Pseudomonas mosselii 0 species 1 species 1 0 124 Pseudomonas fulva 47880 Pseudomonas frederiksbergensis 188 104087 1 species 0 136843 1741 0 species group 9 47878 199 Pseudomonas azotoformans 0 species 1 76761 Pseudomonas veronii 42 0 1 species 1 species 0 Pseudomonas fluorescens 1064 294 0 species 1 75612 71 Pseudomonas mandelii 0 1 species 200451 Pseudomonas poae 60 380021 90 Pseudomonas protegens 0 species 1 Pseudomonas trivialis 133 200450 1 species 0 1 species 0 39 Pseudomonas corrugata 47879 43 Pseudomonas orientalis 76758 1 species 0 Pseudomonas silesiensis 110 1853130 1 species 0 species 1 0 78 Pseudomonas psychrotolerans 237610 species 1 0 Pseudomonas antarctica 37 219572 1788301 Pseudomonas versuta 79 0 species 1 115 Pseudomonas brassicacearum 930166 1 species 0 1 species 0 Pseudomonas cremoricolorata 54 157783 237609 66 Pseudomonas alkylphenolica 0 1 species 0 species 1 244566 Pseudomonas lurida 45 0 1 species 101564 Pseudomonas alcaliphila 74 species group 2 0 478 136842 0 species 1 296 125 Pseudomonas fragi 0 1 species 587753 Pseudomonas chlororaphis 353 0 1 species 312306 Pseudomonas entomophila 51 1108 136849 8 species group 0 1 species 0 Pseudomonas viridiflava 49 33069 1 species subgroup 0 547 251695 317 547 Pseudomonas syringae 0 species 1 0 no rank 1 2775504 57 0 species 1 1206777 57 Pseudomonas sp. Lz4W 0 species 1 46257 50 Pseudomonas avellanae 200 251698 2 species subgroup 0 species 1 0 98 Pseudomonas savastanoi 29438 0 species 1 47877 Pseudomonas amygdali 102 0 1 species 36746 57 Pseudomonas cichorii 1 species 0 148 Pseudomonas syringae group genomosp. 3 251701 173 1 3 Oblitimonas 1849530 genus 2 0 0 1 species 1697053 Oblitimonas alkaliphila 170 subfamily 2 0 242 351 352 242 0 2 genus 0 species 1 353 163 Azotobacter chroococcum 0 1 species 354 79 Azotobacter vinelandii 0 42 family 468 Moraxellaceae 20 9103 1 475 730 1 8 Moraxella 0 genus 5 34062 Moraxella osloensis 280 0 1 species 29433 Moraxella ovis 90 0 1 species 480 201 Moraxella catarrhalis 0 species 1 386891 Moraxella bovoculi 151 0 species 1 11 genus 0 1469 1 Psychrobacter 28 497 45610 138 Psychrobacter urativorans 0 species 1 Psychrobacter arcticus 130 334543 1 species 0 196806 812 0 no rank 6 0 species 1 1699624 123 Psychrobacter sp. P11G5 0 1 species 1028416 Psychrobacter sp. DAB_AL43B 136 1720344 Psychrobacter sp. AntiMn-1 110 0 species 1 571800 109 Psychrobacter sp. G 0 1 species 0 1 species 1699622 147 Psychrobacter sp. P2G3 0 species 1 349106 187 Psychrobacter sp. PRwf-1 0 1 species 330922 Psychrobacter cryohalolentis 144 species 1 0 217 Psychrobacter alimentarius 261164 1 6884 Acinetobacter 74 469 25 genus 0 species 1 0 Acinetobacter larvae 220 1789224 0 species 1 1324350 Acinetobacter equi 367 3018 909768 5 species group 0 species 1 0 Acinetobacter baumannii 1020 470 455 Acinetobacter calcoaceticus 471 species 1 0 Acinetobacter lactucae 233 1785128 species 1 0 Acinetobacter pittii 969 48296 1 species 0 Acinetobacter nosocomialis 341 106654 1 species 0 1 species 0 266 Acinetobacter haemolyticus 29430 0 species 1 756892 Acinetobacter indicus 91 1 species 0 169 Acinetobacter soli 487316 202950 213 0 1 species 1 strain 0 213 Acinetobacter sp. ADP1 62977 Acinetobacter oleivorans 230 1148157 species 1 0 106648 Acinetobacter bereziniae 235 0 species 1 162 Acinetobacter johnsonii 40214 1 species 0 species 1 0 169 Acinetobacter schindleri 108981 no rank 7 0 1229 196816 Acinetobacter sp. TTH0-4 229 1646498 species 1 0 1407071 179 Acinetobacter sp. TGL-Y2 0 1 species 162 Acinetobacter sp. NCu2D-2 1608473 1 species 0 0 1 species 2079596 174 Acinetobacter sp. SWBY1 111 Acinetobacter sp. LoGeW2-3 1808001 1 species 0 0 species 1 1636603 Acinetobacter sp. ACNIH1 181 1758189 Acinetobacter sp. ACNIH2 193 0 species 1 1 species 0 130 Acinetobacter radioresistens 40216 1 species 0 311 Acinetobacter junii 40215 84 Enterobacterales 30918 1 91347 order 242 0 Enterobacteriaceae 89 13167 1 543 117 family 0 191675 2389 0 no rank 19 clade 19 0 2389 84563 146 1 Candidatus Mikella 3 1906660 2 genus 0 1778264 Candidatus Mikella endobia 143 0 species 1 1 Candidatus Tachikawaea 352 1 1682492 genus 2 0 species 1 0 351 Candidatus Tachikawaea gelatinosa 1410383 clade 1 0 108 199891 0 1 species 1835721 secondary endosymbiont of Trabutina mannipara 108 146507 382 0 4 clade 0 genus 2 568987 159 1 2 Candidatus Hamiltonella 1 species 0 Candidatus Hamiltonella defensa 157 138072 species 1 0 166 secondary endosymbiont of Heteropsylla cubana 134287 0 1 species 1199245 secondary endosymbiont of Ctenarytaina eucalypti 57 1192 84564 7 clade 0 0 genus 7 203804 9 Candidatus Blochmannia 1192 1 711328 415 0 2 no rank 1505597 235 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1 species 0 1 species 1505596 180 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 245 Candidatus Blochmannia vafer 251535 1 species 0 203907 205 Candidatus Blochmannia floridanus 0 species 1 160 Candidatus Blochmannia pennsylvanicus 101534 species 1 0 species 1 0 Candidatus Blochmannia chromaiodes 158 251542 1906657 35 0 genus 1 0 1 species 1778262 35 Candidatus Doolittlea endobia 58 1906659 genus 1 0 Candidatus Hoaglandella endobia 58 1778263 1 species 0 1906661 116 0 genus 1 1 species 0 Candidatus Gullanella endobia 116 1070130 genus 3 0 112 620 623 Shigella flexneri 33 0 species 1 28 2629414 no rank 1 0 species 1 0 28 Shigella sp. PAMC 28760 1813821 51 Shigella dysenteriae 622 1 species 0 genus 4 0 153 1 2 Leclercia 83654 species 1 0 54 Leclercia adecarboxylata 83655 97 2627398 2 no rank 0 0 1 species 1920116 42 Leclercia sp. LSNIH3 species 1 0 55 Leclercia sp. LSNIH1 1920114 0 1 genus 401618 186 1 species 0 186 Candidatus Riesia pediculicola 401619 544 1 1145 Citrobacter 39 0 14 genus 0 7 species group 1344959 609 0 species 1 2077148 Citrobacter freundii complex sp. CFNIH4 34 1 species 0 59 Citrobacter freundii complex sp. CFNIH2 2066049 67827 Citrobacter werkmanii 90 0 species 1 246 Citrobacter freundii 546 species 1 0 0 1 species 2077147 Citrobacter freundii complex sp. CFNIH3 48 57706 93 Citrobacter braakii 0 species 1 species 1 0 39 Citrobacter freundii complex sp. CFNIH9 2077149 0 species 1 67824 149 Citrobacter farmeri 35703 153 Citrobacter amalonaticus 0 1 species 0 no rank 2 2644389 104 69 Citrobacter sp. CFNIH10 1920110 1 species 0 species 1 0 Citrobacter sp. FDAARGOS_156 35 1702170 1 species 0 Citrobacter koseri 46 545 species 1 0 Citrobacter rodentium 45 67825 genus 8 0 6 Cronobacter 348 1 413496 0 species 1 413497 46 Cronobacter dublinensis 1 species 0 58 Cronobacter malonaticus 413503 30 Cronobacter muytjensii 413501 species 1 0 535744 30 Cronobacter universalis 0 1 species 77 Cronobacter sakazakii 28141 species 1 0 0 1 species 413502 50 Cronobacter turicensis 1163710 Cronobacter condimenti 51 0 species 1 10 genus 0 2141 1 Klebsiella 20 570 2 no rank 0 100 2608929 0 species 1 1934254 50 Klebsiella sp. M5al Klebsiella sp. LTGPAF-6F 50 1905288 1 species 0 573 894 Klebsiella pneumoniae 0 species 1 1134687 148 Klebsiella michiganensis 0 1 species 571 Klebsiella oxytoca 305 0 species 1 244366 132 Klebsiella variicola 0 1 species 1 species 0 Klebsiella aerogenes 404 548 Klebsiella quasivariicola 56 2026240 1 species 0 1463165 Klebsiella quasipneumoniae 82 0 1 species 66 1 Candidatus Moranella 1 1048757 2 genus 0 1048758 Candidatus Moranella endobia 65 0 1 species 579 36 0 genus 1 36 Kluyvera intermedia 61648 1 species 0 160674 218 1 2 Raoultella 0 genus 3 54291 Raoultella ornithinolytica 169 0 species 1 1 species 0 47 Raoultella planticola 575 5 genus 0 Kosakonia 3 211 1 1330547 0 1 species 1158459 46 Kosakonia sacchari 497725 51 Kosakonia oryzae 0 1 species 283686 66 Kosakonia radicincitans 0 species 1 208223 45 Kosakonia cowanii 0 species 1 1330546 1 Pluralibacter 1 140 0 genus 3 Pluralibacter gergoviae 77 61647 species 1 0 62 [Enterobacter] lignolyticus 1334193 species 1 0 0 3 genus 590 Salmonella 2 1 1479 species 1 0 Salmonella enterica 1350 28901 127 Salmonella bongori 54736 species 1 0 44 1335483 genus 1 0 563 44 Shimwellia blattae 0 species 1 2 genus 0 Cedecea 1 1 154 158483 species 1 0 153 Cedecea neteri 158822 0 genus 1 409304 323 1 species 0 Candidatus Ishikawaella capsulata 323 168169 0 5 genus 561 1 1955 Escherichia 1 species 1 0 1764 Escherichia coli 562 species 1 0 54 Escherichia marmotae 1499973 0 species 1 564 Escherichia fergusonii 30 208962 Escherichia albertii 106 0 1 species 0 genus 22 547 1 1330 51 Enterobacter 354276 947 0 12 species group 81 2757714 no rank 3 0 2077137 34 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 species 1 21 Enterobacter cloacae complex bacterium 2027919 species 1 0 1915310 26 Enterobacter cloacae complex sp. ECNIH7 0 species 1 208224 39 Enterobacter kobei 0 species 1 1 261 183 Enterobacter hormaechei 158836 species 3 0 0 subspecies 1 1296536 Enterobacter xiangfangensis 25 subspecies 1 0 Enterobacter cloacae complex 'Hoffmann cluster III' 53 1812934 species 1 0 36 Enterobacter cancerogenus 69218 Enterobacter cloacae complex 'Hoffmann cluster IV' 14 1812935 1 species 0 0 species 1 61645 Enterobacter asburiae 109 Enterobacter cloacae 369 550 species 1 0 299767 38 Enterobacter ludwigii 0 1 species 2608935 332 0 no rank 9 0 1 species 1166130 Enterobacter sp. R4-368 47 Enterobacter sp. 638 45 399742 1 species 0 0 species 1 1977566 24 Enterobacter sp. Crenshaw 1 species 0 34 Enterobacter sp. FY-07 1692238 Enterobacter sp. E20 32 1560339 species 1 0 45 Enterobacter sp. CRENT-193 2051905 species 1 0 Enterobacter sp. ODB01 42 1827481 species 1 0 Enterobacter sp. HK169 27 1868135 species 1 0 0 1 species 1914861 Enterobacter sp. SA187 36 genus 4 0 1 192 1 Lelliottia 1330545 1 species 0 Lelliottia amnigena 107 61646 Lelliottia jeotgali 35 1907578 species 1 0 69220 49 Lelliottia nimipressuralis 0 species 1 456 36866 5 no rank 0 693444 Enterobacteriaceae bacterium strain FGI 57 41 0 1 species 2066051 Enterobacteriaceae bacterium ENNIH1 55 0 species 1 0 species 1 891974 Plautia stali symbiont 266 0 species 1 1920128 50 Enterobacteriaceae bacterium ENNIH3 1920109 44 Enterobacteriaceae bacterium ENNIH2 0 species 1 family 38 0 1 4380 10 Yersiniaceae 1903411 629 Yersinia 46 1 2354 0 13 genus 0 1 species 28152 Yersinia kristensenii 83 1 species 0 Yersinia rohdei 92 29485 630 Yersinia enterocolitica 388 0 1 species species 1 0 Yersinia aldovae 102 29483 2653513 67 0 1 no rank species 1 0 Yersinia sp. FDAARGOS_228 67 1839800 1 species 0 71 Yersinia aleksiciae 263819 76 Yersinia intermedia 631 1 species 0 29484 Yersinia frederiksenii 249 0 1 species 3 species group 0 1068 1649845 0 species 1 633 Yersinia pseudotuberculosis 231 species 1 0 515 Yersinia similis 367190 322 Yersinia pestis 632 species 1 0 species 1 0 Yersinia ruckeri 112 29486 1745211 58 0 genus 1 1639108 Chania multitudinisentens 58 0 species 1 0 2 genus 929812 56 1 Gibbsiella 3 53 Gibbsiella quercinecans 929813 1 species 0 33 Serratia 1667 1 613 genus 16 0 0 species 1 82996 Serratia plymuthica 133 48 Serratia proteamaculans 28151 species 1 0 species 1 0 Serratia rubidaea 63 61652 8 no rank 0 545 2647522 2033438 Serratia sp. MYb239 60 0 species 1 488142 126 Serratia sp. SCBI 0 1 species 0 1 species 1327989 74 Serratia sp. FS14 1 species 0 49 Serratia sp. AS12 768490 104623 Serratia sp. ATCC 39006 79 0 1 species species 1 0 49 Serratia sp. AS13 768493 1758196 Serratia sp. SSNIH1 57 0 1 species 0 1 species 671990 Serratia sp. FGI94 51 67 Serratia ficaria 61651 1 species 0 0 1 species 615 481 Serratia marcescens Serratia fonticola 196 47917 species 1 0 0 species 1 614 Serratia liquefaciens 101 0 genus 4 34037 1 231 5 Rahnella 0 no rank 2 2635087 154 1 species 0 Rouxiella sp. ERMR1:05 82 1805933 Rahnella sp. Y9602 72 741091 1 species 0 species 1 0 Rahnella aquatilis 72 34038 genus 1 0 4 Rouxiella 1565532 family 21 0 8 Morganellaceae 1 2825 1903414 4 genus 0 Photorhabdus 10 1 436 29487 species 1 0 167 Photorhabdus asymbiotica 291112 species 1 0 Photorhabdus luminescens 138 29488 Photorhabdus temperata 121 574560 species 1 0 genus 2 0 109 1 3 Morganella 581 106 Morganella morganii 582 1 species 0 genus 1 0 319 637 319 Arsenophonus symbiont of Lipoptena fortisetosa 634113 1 species 0 0 genus 4 586 1 568 5 Providencia 1 species 0 Providencia stuartii 213 588 species 1 0 142 Providencia alcalifaciens 126385 0 1 species 587 208 Providencia rettgeri 641 1 5 Xenorhabdus 626 genus 6 0 0 1 species 40577 111 Xenorhabdus poinarii 0 1 species 351671 86 Xenorhabdus doucetiae 1 species 0 Xenorhabdus hominickii 128 351679 species 1 0 Xenorhabdus nematophila 119 628 192 Xenorhabdus bovienii 40576 1 species 0 3 genus 0 1 744 Proteus 7 583 585 Proteus vulgaris 284 0 1 species Proteus mirabilis 453 584 1 species 0 0 14 family 1903412 2843 1 Hafniaceae 7 2 genus 0 1 76 Obesumbacterium 1 82982 0 species 1 82983 75 Obesumbacterium proteus 0 3 genus 568 291 1 Hafnia 2 0 1 species 569 219 Hafnia alvei 1 no rank 0 70 2621980 Hafnia sp. CBA7124 70 1848580 species 1 0 2469 1 Edwardsiella 19 635 8 genus 0 species 1 0 Edwardsiella piscicida 63 1263550 93378 40 Edwardsiella hoshinae 0 species 1 0 1 species 1821960 104 Edwardsiella anguillarum 67780 Edwardsiella ictaluri 52 0 1 species 0 1 species 636 2025 Edwardsiella tarda 166 2676541 no rank 2 0 1578828 89 Edwardsiella sp. EA181011 0 species 1 Edwardsiella sp. LADL05-105 77 1650654 1 species 0 1903409 16 Erwiniaceae 1 5804 0 family 28 genus 2 0 112 2100764 1 species 0 43 Pantoea gaviniae 665914 1 species 0 Pantoea calida 69 665913 8 genus 0 Erwinia 11 459 1 551 42 2622719 1 no rank 0 Erwinia sp. Ejp617 42 215689 1 species 0 79967 Erwinia pyrifoliae 53 0 1 species 1 species 0 58 Erwinia amylovora 552 Erwinia gerundensis 55 1619313 1 species 0 89 Erwinia billingiae 182337 species 1 0 0 1 species 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 113 1 species 0 38 Erwinia tasmaniensis 338565 genus 2 0 1 Tatumella 1 88 82986 Tatumella citrea 87 53336 1 species 0 Wigglesworthia 6 661 1 51228 2 genus 0 species 1 0 Wigglesworthia glossinidia 655 51229 1 3445 Buchnera 12 32199 2 genus 0 species 1 0 Buchnera aphidicola 3433 9 0 genus 11 53335 1023 1 23 Pantoea species group 1 0 102 1654067 549 102 Pantoea agglomerans 0 1 species 107 Pantoea ananatis 553 1 species 0 1891675 55 Pantoea alhagi 0 1 species 2630326 196 0 no rank 3 70 Pantoea sp. At-9b 592316 species 1 0 species 1 0 69 Pantoea sp. PSNIH2 1484157 Pantoea sp. PSNIH1 57 1484158 1 species 0 1235990 Candidatus Pantoea carbekii 251 0 species 1 species 1 0 Pantoea stewartii 64 66269 0 species 1 470934 Pantoea vagans 164 1 species 0 61 Pantoea rwandensis 1076550 family 3 0 1 89 6 Budviciaceae 1903416 2 Pragia 83 1 82984 genus 2 0 species 1 0 Pragia fontium 81 82985 0 no rank 1 451511 114 1 genus 0 114 702 0 species 1 703 114 Plesiomonas shigelloides 1903410 1 1612 3 Pectobacteriaceae 0 family 19 genus 1 0 64 71655 1 species 0 64 Brenneria goodwinii 1109412 Sodalis 9 1 466 84565 5 genus 0 0 species 1 1486991 78 Candidatus Sodalis pierantonius 0 1 species 1239307 83 Sodalis praecaptivus 0 1 species 1929246 Sodalis endosymbiont of Henestaris halophilus 227 species 1 0 69 Sodalis glossinidius 63612 1 649 Pectobacterium 9 122277 6 genus 0 29471 80 Pectobacterium atrosepticum 0 1 species 0 1 species 55208 81 Pectobacterium wasabiae 554 Pectobacterium carotovorum 212 0 1 species 2042057 69 Pectobacterium polaris 0 1 species Pectobacterium parmentieri 198 1905730 1 species 0 430 1 11 Dickeya 204037 genus 6 0 204039 60 Dickeya dianthicola 0 species 1 Dickeya zeae 186 204042 species 1 0 1089444 Dickeya solani 83 0 1 species 204038 Dickeya dadantii 38 0 1 species 0 species 1 1778540 52 Dickeya fangzhongdai 7698 1 19 Oceanospirillales 135619 order 65 0 0 family 6 1920240 627 1 5 Kangiellaceae 622 1 Kangiella 3 261963 5 genus 0 0 species 1 914150 147 Kangiella geojedonensis 1144748 Kangiella sediminilitoris 130 0 species 1 0 species 1 1561924 165 Kangiella profundi 0 1 species 261964 Kangiella koreensis 177 28 family 0 Halomonadaceae 30 2662 1 28256 404432 118 0 genus 1 Salinicola tamaricis 118 1771309 species 1 0 97 42054 1 genus 0 species 1 0 97 Chromohalobacter salexigens 158080 0 4 no rank 114403 602 0 genus 1 1495768 243 1 species 0 243 Candidatus Evansia muelleri 1495769 1 genus 0 125 114185 1 species 0 Candidatus Carsonella ruddii 125 114186 235572 Candidatus Portiera 1 1 234 0 2 genus 1 species 0 Candidatus Portiera aleyrodidarum 233 91844 376488 1 90 Halotalea 3 0 2 genus 0 species 1 376489 Halotalea alkalilenta 87 genus 1 0 109 204286 1 species 0 109 Cobetia marina 28258 genus 3 0 3 Kushneria 167 1 504090 698828 Kushneria konosiri 96 0 1 species 0 species 1 157779 Kushneria marisflavi 68 0 15 genus 2745 Halomonas 22 1449 1 0 1 species 507626 79 Halomonas chromatireducens 1897729 Halomonas aestuarii 103 0 1 species no rank 8 0 812 2609666 species 1 0 131 Halomonas sp. GT 1971364 1962264 Halomonas sp. 'Soap Lake #7' 104 0 1 species species 1 0 Halomonas sp. 1513 103 1883416 1610576 84 Halomonas sp. R57-5 0 species 1 1 species 0 104 Halomonas sp. 'Soap Lake #6' 1949203 species 1 0 125 Halomonas sp. SF2003 2136172 Halomonas sp. GFAJ-1 72 1118153 1 species 0 1 species 0 89 Halomonas sp. KO116 1504981 0 1 species 115561 72 Halomonas hydrothermalis species 1 0 Halomonas beimenensis 127 475662 1178482 Halomonas huangheensis 129 0 species 1 0 1 species 213554 105 Halomonas campaniensis 0 family 4 255527 1 Saccharospirillaceae 360 1 0 2 genus 1445504 1 202 Gynuella 2 1445505 Gynuella sunshinyii 200 0 species 1 230494 157 0 genus 1 0 1 species 1336806 157 Reinekea forsetii 0 9 family 224372 2378 1 Alcanivoracaceae 5 Ketobacter 4 1 144 2025617 2 genus 0 140 Ketobacter alkanivorans 1917421 species 1 0 0 6 genus 59753 Alcanivorax 17 2229 1 Alcanivorax dieselolei 180 285091 species 1 0 0 species 1 1094342 Alcanivorax xenomutans 211 1 species 0 168 Alcanivorax pacificus 1306787 Alcanivorax borkumensis 842 59754 species 1 0 0 no rank 1 2638842 811 1113728 Alcanivorax sp. NBRC 101098 811 0 1 species 3 family 0 1 141 Hahellaceae 1 224379 2 genus 0 Hahella 4 140 1 158481 136 Hahella chejuensis 158327 1 species 0 1 1310 6 Oceanospirillaceae 135620 family 12 0 208 188907 1 genus 0 208 Oleispira antarctica 188908 1 species 0 2 genus 0 129 1 Bacterioplanes 2 1537406 Bacterioplanes sanyensis 127 1249553 1 species 0 172 1 Thalassolituus 4 187492 2 genus 0 187493 Thalassolituus oleivorans 168 0 species 1 0 genus 4 28253 1 607 3 Marinomonas 196814 255 0 no rank 1 0 1 species 400668 Marinomonas sp. MWYL1 255 189 Marinomonas mediterranea 119864 1 species 0 Marinomonas posidonica 160 936476 species 1 0 188 1 Marinobacterium 1 48075 2 genus 0 species 1 0 Marinobacterium aestuarii 187 1821621 0 family 2 191033 1 201 11 Oleiphilaceae 141450 190 0 genus 1 Oleiphilus messinensis 190 141451 species 1 0 135613 20 Chromatiales 1 3424 0 order 46 0 family 3 255526 133 0 genus 3 109262 1 133 4 Halothiobacillus 63 2636392 no rank 1 0 1 species 0 Halothiobacillus sp. LS2 63 1860122 1 species 0 66 Halothiobacillus neapolitanus 927 120 1738654 2 family 0 120 1 6 Woeseia 1738655 genus 2 0 114 Woeseia oceani 1548547 species 1 0 family 16 0 1093 1 16 Ectothiorhodospiraceae 72276 genus 6 0 541 1 14 Thioalkalivibrio 106633 0 no rank 1 2621013 89 0 species 1 396595 89 Thioalkalivibrio sp. K90mix 186931 Thioalkalivibrio nitratireducens 92 0 1 species Thioalkalivibrio versutus 92 106634 species 1 0 88 Thioalkalivibrio paradoxus 108010 species 1 0 1033854 Thioalkalivibrio sulfidiphilus 166 0 1 species 0 genus 3 1335745 1 159 2 Spiribacter Spiribacter curvatus 78 1335757 species 1 0 species 1 0 Spiribacter salinus 79 1335746 2 genus 0 Acidihalobacter 1 1 129 1765964 160660 128 Acidihalobacter prosperus 0 species 1 0 1 genus 133193 76 Alkalilimnicola ehrlichii 76 351052 species 1 0 1 genus 0 100 1051 0 no rank 1 2684909 100 100 Ectothiorhodospira sp. BSL-9 1442136 1 species 0 85108 Halorhodospira 1 72 1 0 2 genus 1 species 0 Halorhodospira halophila 71 1053 159 1676141 2 family 0 1676142 1 Wenzhouxiangella 159 1 0 genus 2 1579979 158 Wenzhouxiangella marina 0 species 1 no rank 2 0 97 451214 0 2 genus 1273155 Thiohalobacter 2 97 1 0 species 1 585455 95 Thiohalobacter thiocyanaticus 0 family 3 449719 237 1 2 Granulosicoccaceae Granulosicoccus 4 235 1 437504 2 genus 0 0 1 species 437505 Granulosicoccus antarcticus 231 family 17 0 17 Chromatiaceae 1565 1 1046 199 1 1 Candidatus Nitrosoglobus 1980513 genus 2 0 1630141 198 Candidatus Nitrosoglobus terrae 0 species 1 65 85072 genus 1 0 0 1 species 1049 65 Allochromatium vinosum 85076 Marichromatium 2 1 128 0 2 genus 0 1 species 37487 Marichromatium purpuratum 126 53392 Thiodictyon 3 1 379 0 2 genus 1166950 376 Candidatus Thiodictyon syntrophicum 0 species 1 13724 1 90 Thiocystis 1 0 2 genus 1 species 0 89 Thiocystis violascens 73141 156885 1 95 2 Thioflavicoccus 0 genus 2 species 1 0 Thioflavicoccus mobilis 93 80679 1 no rank 0 117 82569 0 1 species 1978339 117 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 4 genus 1227 1 475 Nitrosococcus 3 0 1 species 133539 Nitrosococcus halophilus 105 108 Nitrosococcus oceani 1229 species 1 0 0 1 species 473531 Nitrosococcus watsonii 259 0 12 no rank 118884 2674 90 1 1 Thiolapillus 1608298 genus 2 0 Thiolapillus brandeum 89 1076588 1 species 0 32036 922 0 clade 3 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 228 0 species 1 410330 Calyptogena okutanii thioautotrophic gill symbiont 403 0 species 1 1541743 291 0 genus 1 species 1 0 291 Candidatus Ruthia magnifica 386487 0 clade 1 198346 519 519 Candidatus Baumannia cicadellinicola 186490 species 1 0 genus 2 0 125 1 4 Pseudohongiella 1524249 0 species 1 1249552 Pseudohongiella spirulinae 121 1 genus 0 147 349742 0 1 species 1543721 Sedimenticola thiotaurini 147 3 genus 0 Candidatus Thioglobus 4 1 871 655184 Candidatus Thioglobus singularis 580 1427364 species 1 0 287 Candidatus Thioglobus autotrophicus 1705394 1 species 0 135623 1 14334 7 Vibrionales 0 order 43 641 38 Vibrionaceae 14327 1 0 family 42 1 962 3 Paraphotobacterium 2042066 genus 2 0 0 1 species 1755811 959 Paraphotobacterium marinum 246861 90 0 1 genus 90 Grimontia hollisae 673 1 species 0 0 30 genus 662 1 9591 Vibrio 111 2 no rank 0 213 2614977 0 1 species 2014742 Vibrio sp. 2521-89 75 1116375 138 Vibrio sp. EJY3 0 species 1 553239 146 Vibrio breoganii 0 1 species 676 Vibrio fluvialis 110 0 species 1 1 species 0 277 Vibrio anguillarum 55601 666 Vibrio cholerae 239 0 species 1 0 1 species 212663 200 Vibrio tasmaniensis 0 1 species 672 Vibrio vulnificus 534 Vibrio tritonius 194 1435069 1 species 0 131 Vibrio qinghaiensis 2025808 species 1 0 10 species group 0 5390 717610 2315253 399 0 2 species subgroup 50719 268 Vibrio diabolicus 0 species 1 Vibrio antiquarius 131 150340 1 species 0 1 species 0 Vibrio jasicida 147 766224 663 Vibrio alginolyticus 560 0 species 1 0 species 1 669 Vibrio harveyi 554 0 species 1 680 1049 Vibrio campbellii 243 Vibrio natriegens 691 species 1 0 457 Vibrio owensii 696485 1 species 0 Vibrio rotiferianus 1411 190895 species 1 0 670 Vibrio parahaemolyticus 570 0 species 1 species 1 0 Vibrio coralliilyticus 345 190893 species 1 0 Vibrio furnissii 165 29494 240 Vibrio tapetis 52443 1 species 0 229 1891919 1 species group 0 29498 Vibrio tubiashii 229 0 species 1 0 1 species 1534743 Vibrio hyugaensis 196 species 1 0 159 Vibrio mimicus 674 0 species 1 45658 262 Vibrio scophthalmi Vibrio gazogenes 189 687 1 species 0 Vibrio nigripulchritudo 261 28173 species 1 0 0 4 genus 657 1 2700 Photobacterium 3 species 1 0 Photobacterium gaetbulicola 92 1295392 38293 Photobacterium damselae 2349 0 1 species 256 Photobacterium profundum 74109 species 1 0 genus 4 0 1 946 8 Aliivibrio 511678 1 species 0 Aliivibrio wodanis 371 80852 0 1 species 668 325 Aliivibrio fischeri 242 Aliivibrio salmonicida 40269 1 species 0 135624 9 Aeromonadales 2264 1 0 order 27 84642 Aeromonadaceae 24 1 2255 0 26 family 1 genus 0 69 43947 species 1 0 Tolumonas auensis 69 43948 129577 1 81 2 Oceanimonas 0 genus 2 0 no rank 1 2636315 79 511062 79 Oceanimonas sp. GK1 0 species 1 130 347533 1 genus 0 species 1 0 Zobellella denitrificans 130 347534 210 1 2 Oceanisphaera 225143 genus 3 0 1903694 Oceanisphaera sp. AMac2203 116 0 1 species Oceanisphaera profunda 92 1416627 1 species 0 0 18 genus 642 1 1741 Aeromonas 85 0 1 species 644 379 Aeromonas hydrophila 60 Aeromonas dhakensis 196024 species 1 0 0 species 1 645 Aeromonas salmonicida 290 0 1 species 558964 Aeromonas aquatica 70 652 73 Aeromonas schubertii 0 species 1 Aeromonas veronii 170 654 species 1 0 no rank 8 0 466 257493 1636607 41 Aeromonas sp. ASNIH2 0 species 1 0 1 species 1758179 54 Aeromonas sp. ASNIH5 1 species 0 Aeromonas sp. ASNIH7 43 1920107 1 species 0 Aeromonas sp. CU5 40 2033033 104 Aeromonas sp. ASNIH1 1636606 species 1 0 1636609 Aeromonas sp. ASNIH4 70 0 1 species 79 Aeromonas sp. CA23 2033032 1 species 0 35 Aeromonas sp. ASNIH3 1636608 species 1 0 0 species 1 648 Aeromonas caviae 29 1 species 0 Aeromonas rivipollensis 57 948519 651 62 Aeromonas media 0 species 1 40 Alteromonadales 1 20117 135622 order 102 0 5354 1 Pseudoalteromonadaceae 4 267888 25 family 0 53246 77 Pseudoalteromonas 5350 1 0 genus 24 Pseudoalteromonas translucida 172 166935 1 species 0 species 1 0 183 Pseudoalteromonas agarivorans 176102 species 1 0 232 Pseudoalteromonas luteoviolacea 43657 0 1 species 28107 173 Pseudoalteromonas espejiana 267375 Pseudoalteromonas marina 176 0 species 1 species 1 0 346 Pseudoalteromonas atlantica 288 species 1 0 240 Pseudoalteromonas arctica 394751 0 species 1 161398 270 Pseudoalteromonas phenolica 152297 177 Pseudoalteromonas issachenkonii 0 species 1 1 species 0 119 Pseudoalteromonas rubra 43658 Pseudoalteromonas piratica 293 1348114 species 1 0 Pseudoalteromonas spongiae 307 298657 1 species 0 228 191 Pseudoalteromonas haloplanktis 0 1 species 0 species 1 247523 Pseudoalteromonas aliena 237 1 species 0 Pseudoalteromonas tetraodonis 164 43659 314281 Pseudoalteromonas tunicata 277 0 1 species 43662 132 Pseudoalteromonas piscicida 0 species 1 194690 1393 0 no rank 5 201 Pseudoalteromonas sp. Bsw20308 283699 species 1 0 Pseudoalteromonas sp. 13-15 220 1761891 1 species 0 species 1 0 561 Pseudoalteromonas sp. NC201 1514074 1720343 236 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 1 species 0 species 1 234831 175 Pseudoalteromonas sp. SM9913 0 species 1 28109 Pseudoalteromonas nigrifaciens 191 267889 7 Colwelliaceae 1 2059 0 family 8 267 1518149 1 genus 0 Thalassotalea crassostreae 267 1763536 species 1 0 0 genus 6 28228 1 1785 15 Colwellia no rank 3 0 1000 196834 58049 Colwellia sp. MT41 328 0 species 1 302 Colwellia sp. PAMC 20917 1816218 1 species 0 1 species 0 Colwellia sp. PAMC 21821 370 1816219 0 1 species 28229 Colwellia psychrerythraea 388 1967665 Colwellia beringensis 382 0 species 1 1 346 Moritellaceae 5 267891 2 family 0 0 genus 1 58050 341 1 species 0 Moritella viscosa 341 80854 267893 1 366 Idiomarinaceae 1 0 6 family genus 5 0 1 365 6 Idiomarina 135575 1096243 98 Idiomarina piscisalsi 0 1 species 0 species 1 135577 101 Idiomarina loihiensis 0 no rank 2 2614829 160 2055892 Idiomarina sp. X4 83 0 species 1 species 1 0 Idiomarina sp. OT37-5b 77 2100422 65 267892 1 family 0 0 1 genus 44011 65 Ferrimonas balearica 65 44012 1 species 0 0 family 4 267894 1 Psychromonadaceae 576 1 575 1 2 Psychromonas 67572 genus 3 0 357794 Psychromonas ingrahamii 313 0 1 species 0 1 no rank 2614957 260 260 Psychromonas sp. CNPT3 314282 1 species 0 0 25 family 267890 4211 1 Shewanellaceae 3 0 24 genus 22 Shewanella 48 1 4208 species 1 0 63 Shewanella loihica 359303 1 species 0 124 Shewanella pealeana 70864 0 species 1 260364 69 Shewanella marisflavi 1 species 0 Shewanella woodyi 223 60961 Shewanella japonica 311 93973 species 1 0 167 Shewanella piezotolerans 404011 1 species 0 0 1 species 60478 Shewanella amazonensis 83 190 Shewanella putrefaciens 24 species 1 0 species 1 0 152 Shewanella sediminis 271097 0 1 species 2018305 Shewanella bicestrii 92 688 196818 6 no rank 0 60480 76 Shewanella sp. MR-4 0 species 1 0 1 species 2029986 126 Shewanella sp. WE21 species 1 0 103 Shewanella sp. ANA-3 94122 161 Shewanella sp. W3-18-1 351745 species 1 0 species 1 0 120 Shewanella sp. Pdp11 2059264 0 1 species 60481 Shewanella sp. MR-7 102 0 1 species 62322 371 Shewanella baltica 0 1 species 56812 Shewanella frigidimarina 235 0 species 1 192073 Shewanella denitrificans 142 0 1 species 271098 Shewanella halifaxensis 598 species 1 0 132 Shewanella oneidensis 70863 292 Shewanella psychrophila 225848 1 species 0 0 1 species 60217 228 Shewanella violacea 1 7100 Alteromonadaceae 7 72275 30 family 0 10 genus 0 Alteromonas 30 1 5027 226 2614992 826 0 no rank 3 334 Alteromonas sp. RW2A1 1917158 1 species 0 Alteromonas sp. Mac1 176 1777491 1 species 0 2058133 316 Alteromonas sp. MB-3u-76 0 species 1 0 1 species 233316 Alteromonas stellipolaris 231 28108 2747 Alteromonas macleodii 0 1 species 1 species 0 Alteromonas australica 201 589873 209 Alteromonas addita 287094 1 species 0 0 species 1 715451 Alteromonas naphthalenivorans 200 314275 Alteromonas mediterranea 583 0 1 species 0 2 genus 1621534 1 370 Paraglaciecola 1 326544 Paraglaciecola psychrophila 369 0 species 1 261825 144 1 2 Agarivorans 0 genus 2 142 Agarivorans gilvus 680279 1 species 0 3 genus 0 Glaciecola 4 400 1 89404 0 no rank 1 2618684 174 0 species 1 983545 174 Glaciecola sp. 4H-3-7+YE-5 Glaciecola nitratireducens 222 300231 species 1 0 Lacimicrobium 2 1 162 1751872 2 genus 0 1 species 0 Lacimicrobium alkaliphilum 160 1526571 0 genus 10 2742 1 990 25 Marinobacter 1 species 0 Marinobacter salinus 93 1874317 Marinobacter adhaerens 109 1033846 species 1 0 1 species 0 99 Marinobacter psychrophilus 330734 1 species 0 126 Marinobacter hydrocarbonoclasticus 2743 0 1 species 1420916 Marinobacter similis 67 1 species 0 195 Marinobacter salarius 1420917 276 83889 no rank 3 0 species 1 0 102 Marinobacter sp. BSs20148 490759 1 species 0 Marinobacter sp. LQ44 82 1749259 1671721 92 Marinobacter sp. CP1 0 1 species 1 phylum 0 79 2138240 79 2138243 class 1 0 79 2138246 1 order 0 2138247 79 0 family 1 1 genus 0 79 68335 35786 79 Coprothermobacter proteolyticus 0 species 1 200930 1147 0 phylum 9 68337 Deferribacteres 1 1147 1 0 9 class order 8 0 1146 1 2 Deferribacterales 191393 0 family 7 191394 2 Deferribacteraceae 1144 1 0 2 genus 545865 Calditerrivibrio 1 1 233 species 1 0 Calditerrivibrio nitroreducens 232 477976 0 1 genus 2351 222 1 species 0 Flexistipes sinusarabici 222 2352 2 genus 0 Deferribacter 3 547 1 53572 Deferribacter desulfuricans 544 197162 species 1 0 0 1 genus 117999 140 118000 140 Denitrovibrio acetiphilus 0 species 1 phylum 56 0 7147 203691 56 class 0 Spirochaetia 15 7147 1 203692 1769 1 3 Brachyspirales 1643686 order 7 0 143786 1766 1 Brachyspiraceae 1 0 6 family 5 genus 0 Brachyspira 8 1765 1 29521 0 species 1 159 Brachyspira hyodysenteriae 420 0 species 1 84377 Brachyspira intermedia 437 52584 548 Brachyspira pilosicoli 0 species 1 1 species 0 Brachyspira murdochii 352 84378 136 1 4290 10 Spirochaetales 0 order 39 0 17 family 1643685 Borreliaceae 8 1 2930 genus 8 0 39 Borrelia 1641 1 138 44449 Borrelia recurrentis 231 0 1 species 142 163 Borrelia turicatae 0 1 species Borrelia duttonii 412 40834 1 species 0 153 Borrelia hermsii 140 1 species 0 Borrelia anserina 164 143 1 species 0 320 Borrelia miyamotoi 47466 1 species 0 141 Borrelia parkeri 159 0 species 1 64895 1 1281 83 Borreliella 0 genus 8 664662 Borreliella bavariensis 122 0 1 species 1 species 0 129 Borreliella valaisiana 62088 Borreliella bissettii 179 64897 species 1 0 0 1 species 29519 291 Borreliella garinii 29518 159 Borreliella afzelii 0 1 species 139 160 Borreliella burgdorferi 0 1 species 1674146 Borrelia mayonii 158 0 1 species Spirochaetaceae 4 1350 1 137 21 family 0 0 genus 2 146 136 0 1 species 154 Spirochaeta thermophila 68 46355 68 Spirochaeta africana 0 1 species 3 genus 0 103 399320 1131703 Sphaerochaeta globosa 25 0 species 1 273376 Sphaerochaeta coccoides 33 0 species 1 Sphaerochaeta pleomorpha 45 1131707 species 1 0 0 12 genus 157 1 827 Treponema 4 44 Treponema paraluiscuniculi 53435 1 species 0 87 Treponema primitia 88058 1 species 0 2638727 50 0 1 no rank 50 Treponema sp. OMZ 838 1539298 species 1 0 221027 Treponema putidum 105 0 species 1 215591 Treponema caldarium 81 0 1 species 37 Treponema pallidum 160 1 species 0 40 Treponema brennaborense 81028 species 1 0 Treponema denticola 115 158 species 1 0 Treponema azotonutricium 43 150829 1 species 0 species 1 0 104 Treponema succinifaciens 167 409322 Treponema pedis 117 0 species 1 202 1616789 genus 1 0 1 species 0 Salinispira pacifica 202 1307761 1 78 1 Sediminispirochaeta 1911556 genus 2 0 77 Sediminispirochaeta smaragdinae 55206 species 1 0 1643688 1073 0 order 9 170 5 Leptospiraceae 1 1073 0 family 9 0 6 genus 171 Leptospira 5 1 1015 Leptospira biflexa 225 172 species 1 0 97 Leptospira santarosai 28183 species 1 0 species 1 0 Leptospira borgpetersenii 159 174 107 Leptospira alstonii 28452 species 1 0 Leptospira interrogans 422 173 species 1 0 0 2 genus 338321 Turneriella 2 1 53 0 1 species 29510 Turneriella parva 51 1783270 71918 0 349 clade 310 142182 phylum 8 0 219685 2 Gemmatimonadetes 1 310 0 class 8 7 order 0 1 308 Gemmatimonadales 3 219686 0 6 family 219687 Gemmatimonadaceae 2 305 1 0 2 genus 1706036 1 142 Gemmatirosa 1 1 species 0 Gemmatirosa kalamazoonesis 141 861299 173479 1 161 4 Gemmatimonas 0 genus 3 Gemmatimonas aurantiaca 72 173480 species 1 0 1 species 0 85 Gemmatimonas phototrophica 1379270 71308 68336 clade 338 0 phylum 22 0 982 1090 class 22 0 3 Chlorobia 1 982 191410 21 order 0 979 1 Chlorobiales 3 191411 family 20 0 6 Chlorobiaceae 1 976 191412 0 genus 2 100715 1 99 1 Chloroherpeton 100716 Chloroherpeton thalassium 98 0 1 species 554 274493 no rank 8 0 1099 99 1 Pelodictyon 1 0 3 genus 0 1 species 1100 Pelodictyon luteolum 32 34090 Pelodictyon phaeoclathratiforme 66 0 species 1 1091 1 455 Chlorobium 3 0 5 genus Chlorobium phaeovibrioides 54 1094 species 1 0 species 1 0 210 Chlorobium phaeobacteroides 1096 Chlorobium limicola 95 1092 1 species 0 93 Chlorobium chlorochromatii 337090 species 1 0 genus 5 0 10 Prosthecochloris 1 169 1101 0 3 no rank 2632826 106 1 species 0 35 Prosthecochloris sp. HL-130-GSB 1974213 281093 37 Prosthecochloris sp. GSB1 0 species 1 species 1 0 34 Prosthecochloris sp. CIB 2401 1868325 1102 53 Prosthecochloris aestuarii 0 species 1 4 genus 0 148 1 Chlorobaculum 4 256319 Chlorobaculum parvum 46 274539 species 1 0 0 1 species 274537 Chlorobaculum limnaeum 57 0 species 1 1097 41 Chlorobaculum tepidum 685 1134404 6 phylum 0 1 685 1 Ignavibacteria 795747 class 6 0 5 order 0 684 795748 119 1334117 family 2 0 0 2 genus 1134403 1 119 Melioribacter 1 118 Melioribacter roseus 1134405 1 species 0 2 Ignavibacteriaceae 565 1 795749 family 3 0 795750 2 Ignavibacterium 563 1 0 genus 2 1 species 0 Ignavibacterium album 561 591197 976 6 Bacteroidetes 69641 1 0 phylum 310 406 1937959 4 class 0 0 4 order 1936988 406 family 2 0 1 Haliscomenobacteraceae 1 258 1937961 257 2349 1 genus 0 2350 257 Haliscomenobacter hydrossis 0 1 species 0 2 family 89374 148 148 1 Saprospira 1 1007 2 genus 0 0 species 1 1008 147 Saprospira grandis 1100069 Bacteroidetes Order II. Incertae sedis 7 1 331 0 6 order 563843 324 0 5 family 0 1 no rank 1196022 121 1779382 121 Rhodothermaceae bacterium RA 0 1 species 5 Rhodothermus 1 97 29548 genus 2 0 species 1 0 92 Rhodothermus marinus 29549 146918 106 1 1 Salinibacter 0 genus 2 146919 105 Salinibacter ruber 0 species 1 21 Flavobacteriia 1 50606 117743 class 142 0 200644 50585 1 Flavobacteriales 38 0 141 order 10 family 0 Blattabacteriaceae 2 2056 1 39782 Blattabacterium 22 2054 1 34098 9 genus 0 1477 2647581 6 no rank 0 species 1 0 Blattabacterium sp. (Blattella germanica) 280 624186 0 1 species 39768 193 Blattabacterium sp. (Mastotermes darwiniensis) 0 species 1 367488 Blattabacterium sp. (Periplaneta americana) 238 1186051 Blattabacterium sp. (Blaberus giganteus) 279 0 1 species 0 1 species 367806 Blattabacterium sp. (Blatta orientalis) 226 0 1 species 1316444 261 Blattabacterium sp. (Nauphoeta cinerea) 287 Blattabacterium cuenoti 1653831 species 1 0 268 Blattabacterium punctulatus 164514 species 1 0 2762318 6095 0 family 20 0 genus 1 34084 528 34085 528 Riemerella anatipestifer 0 1 species 0 genus 2 28250 1 249 1 Ornithobacterium 28251 Ornithobacterium rhinotracheale 248 0 1 species 3088 2782232 no rank 10 0 genus 1 0 144 2782228 536441 Chryseobacterium taklimakanense 144 0 1 species 9 genus 0 2944 1 Chryseobacterium 6 59732 species 1 0 507 Chryseobacterium glaciei 1685010 0 species 1 1265445 104 Chryseobacterium camelliae 0 1 species 1324352 218 Chryseobacterium gallinarum 2593645 1122 0 no rank 3 0 species 1 878220 394 Chryseobacterium sp. StRB126 0 1 species 2015076 Chryseobacterium sp. T16E-39 425 0 1 species 1721091 303 Chryseobacterium sp. IHB B 17019 558152 Chryseobacterium piperi 393 0 species 1 594 Chryseobacterium indologenes 253 1 species 0 266 1013 genus 1 0 Weeksella virosa 266 1014 1 species 0 308865 29 Elizabethkingia 1 1964 0 genus 6 0 species 1 1117645 683 Elizabethkingia anophelis 1756149 285 Elizabethkingia genomosp. 3 0 1 species species 1 0 433 Elizabethkingia miricola 172045 Elizabethkingia meningoseptica 265 238 1 species 0 Elizabethkingia genomosp. 4 269 1756150 species 1 0 269 1755828 2 family 0 0 2 genus 1755829 269 1 Ichthyobacterium 13 242600 Ichthyobacterium seriolicida 256 0 1 species 100 family 0 Flavobacteriaceae 228 1 40786 49546 104267 Tenacibaculum 8 1 3066 0 5 genus Tenacibaculum dicentrarchi 628 669041 species 1 0 0 species 1 107401 Tenacibaculum maritimum 632 1850252 Tenacibaculum todarodis 794 0 1 species 1004 Tenacibaculum jejuense 584609 1 species 0 genus 1 0 515 216431 515 Croceibacter atlanticus 313588 1 species 0 0 5 genus 363408 1742 1 Nonlabens 37 0 no rank 2 2615035 823 483 Nonlabens sp. MIC269 1476901 1 species 0 2058134 Nonlabens sp. MB-3u-79 340 0 species 1 0 species 1 328515 376 Nonlabens dokdonensis 319236 Nonlabens sediminis 506 0 species 1 1 Aureitalea 1 241 1176327 genus 2 0 240 2636237 no rank 1 0 0 1 species 2094025 Aureitalea sp. RR4-38 240 0 1 genus 1204360 615 1 species 0 615 Siansivirga zeaxanthinifaciens 762954 15 genus 0 Capnocytophaga 20 2703 1 1016 1019 Capnocytophaga sputigena 312 0 1 species 313 Capnocytophaga cynodegmi 28189 1 species 0 123 Capnocytophaga ochracea 1018 1 species 0 197 Capnocytophaga stomatis 1848904 species 1 0 0 species 1 45243 121 Capnocytophaga haemolytica 0 6 no rank 2640652 1029 1 species 0 Capnocytophaga sp. oral taxon 323 120 1705617 142 Capnocytophaga sp. oral taxon 864 1316593 species 1 0 0 1 species 1945658 205 Capnocytophaga sp. H4358 217 Capnocytophaga sp. H2931 1945657 1 species 0 209053 152 Capnocytophaga sp. ChDC OS43 0 1 species 0 1 species 1316596 193 Capnocytophaga sp. oral taxon 878 0 species 1 327575 Capnocytophaga leadbetteri 116 species 1 0 151 Capnocytophaga gingivalis 1017 species 1 0 321 Capnocytophaga canimorsus 28188 479 143222 genus 1 0 1 no rank 0 479 2633436 species 1 0 479 Salegentibacter sp. T436 1729720 0 1 genus 178469 297 616991 Arenibacter algicola 297 0 1 species 1 4713 Polaribacter 26 52959 6 genus 0 1 species 0 1061 Polaribacter reichenbachii 996801 0 no rank 3 196858 2539 1 species 0 893 Polaribacter sp. BM10 1529069 species 1 0 744 Polaribacter sp. ALD11 2058137 1 species 0 Polaribacter sp. MED152 902 313598 0 1 species 1774273 1087 Polaribacter vadi 1 genus 0 1073 2700084 0 1 species 1850246 1073 Lutibacter sp. LPB0138 153265 327 0 genus 1 0 species 1 101385 327 Aequorivita sublithincola 0 2 no rank 61432 770 0 species 1 531844 119 Flavobacteriaceae bacterium 3519-10 0 species 1 1150389 Flavobacteriaceae bacterium UJ101 651 521 1209327 genus 1 0 Flavivirga eckloniae 521 1803846 species 1 0 4 genus 0 Cellulophaga 9 2199 1 104264 1 species 0 Cellulophaga baltica 731 76594 737 Cellulophaga lytica 979 species 1 0 Cellulophaga algicola 722 59600 1 species 0 1441 1 5 Winogradskyella 286104 genus 3 0 0 no rank 2 2615021 1436 species 1 0 Winogradskyella sp. PG-2 846 754409 1936080 Winogradskyella sp. J14-2 590 0 1 species Lutibacter 4 914 1 358023 2 genus 0 0 species 1 1622118 910 Lutibacter profundi 112040 216 0 genus 1 species 1 0 216 Zobellia galactanivorans 63186 genus 1 0 496 393005 0 1 species 2069432 496 Tamlana sp. UJ94 796 261827 1 genus 0 Algibacter alginicilyticus 796 1736674 1 species 0 1 1214 11 Gramella 292691 genus 5 0 Gramella sp. SH35 283 2126553 1 species 0 0 1 species 411153 Gramella forsetii 375 330 Gramella sp. LPB0144 1913577 species 1 0 0 species 1 1486245 215 Gramella flava 1649495 750 0 genus 1 no rank 1 0 750 2622645 1936081 Seonamhaeicola sp. S2-3 750 0 1 species 252356 10 Maribacter 1893 1 0 genus 5 1612 2615042 3 no rank 0 313603 455 Maribacter sp. HTCC2170 0 1 species 1836467 564 Maribacter sp. T28 0 species 1 0 species 1 1644130 Maribacter sp. 1_2014MBL_MicDiv 593 0 species 1 1178778 Maribacter cobaltidurans 271 255 389486 genus 1 0 0 no rank 1 2648869 255 0 1 species 1453352 255 Sediminicola sp. YIK13 291183 Lacinutrix 28 1 2285 0 4 genus 0 2 no rank 2647285 1571 1 species 0 817 Lacinutrix sp. Bg11-31 2057808 983544 754 Lacinutrix sp. 5H-3-7-4 0 species 1 1 species 0 Lacinutrix venerupis 686 1486034 76831 30 Myroides 1343 1 0 genus 5 0 species 1 480520 Myroides profundi 350 331 Myroides odoratimimus 76832 species 1 0 2642485 632 0 2 no rank Myroides sp. A21 302 1583100 1 species 0 1458492 Myroides sp. ZB35 330 0 1 species 1 1139 11 Dokdonia 326319 genus 4 0 0 1 species 326320 Dokdonia donghaensis 403 0 no rank 2 2615033 725 species 1 0 330 Dokdonia sp. MED134 313590 1 species 0 Dokdonia sp. 4H-3-7-5 395 983548 0 genus 1 1518147 656 species 1 0 656 Wenyingzhuangia fucanilytica 1790137 668 336276 genus 1 0 no rank 1 0 668 2615019 species 1 0 668 Olleya sp. Bg11-27 2058135 1 genus 0 465 83612 57029 Psychroflexus torquis 465 0 1 species 3 genus 0 1 1059 Formosa 2 225842 0 no rank 2 2644710 1057 species 1 0 460 Formosa sp. Hel1_33_131 1336794 0 species 1 1336795 Formosa sp. Hel3_A1_48 597 98 252306 1 genus 0 species 1 0 Robiginitalea biformata 98 252307 111500 400 1 Muricauda 1 0 3 genus 0 1 species 111501 Muricauda ruestringensis 246 516051 153 Muricauda lutaonensis 0 1 species 237 1 4652 Flavobacterium 7 0 9 genus 1492737 427 Flavobacterium gilvum 0 1 species 425 Flavobacterium branchiophilum 55197 species 1 0 312277 655 Flavobacterium indicum 0 species 1 438 Flavobacterium psychrophilum 96345 1 species 0 0 species 1 1306519 Flavobacterium commune 440 1 species 0 Flavobacterium crassostreae 278 1763534 1 species 0 Flavobacterium johnsoniae 1073 986 909 Flavobacterium columnare 996 1 species 0 557 417127 1 genus 0 1 species 0 Zunongwangia profunda 557 398743 2 family 0 317 1333713 1 317 6 Owenweeksia 267986 genus 2 0 253245 Owenweeksia hongkongensis 311 0 species 1 424 1853230 family 2 0 genus 2 0 2 Fluviicola 424 1 332102 0 species 1 191579 Fluviicola taffensis 422 0 3 no rank 313602 598 0 genus 1 1940138 107 0 species 1 1415657 107 Candidatus Walczuchella monophlebidarum 1 491 2 Candidatus Sulcia 336809 genus 2 0 Candidatus Sulcia muelleri 489 336810 species 1 0 Cryomorphaceae 2 246874 family 1 0 1291 1853228 12 class 0 order 12 0 3 Chitinophagales 1 1291 1853229 563835 1288 1 10 Chitinophagaceae 0 family 11 1769012 176 0 1 genus 176 2636138 1 no rank 0 0 1 species 1850526 176 Arachidicoccus sp. BS20 genus 2 0 225 379899 species 1 0 Niabella soli 101 446683 1 species 0 Niabella ginsenosidivorans 124 1176587 285 79328 2 genus 0 species 1 0 137 Chitinophaga pinensis 79329 2029983 Chitinophagaceae bacterium 13 148 0 species 1 0 genus 1 398041 232 1492898 Flavisolibacter tropicus 232 0 1 species 649460 Filimonas 2 1 153 0 2 genus 477680 151 Filimonas lacunae 0 1 species 354354 2 Niastella 1 207 0 genus 2 Niastella koreensis 205 354356 species 1 0 0 64 class 200643 Bacteroidia 6 1 5009 0 order 53 171549 1 3923 11 Bacteroidales 0 6 family 2005525 321 Tannerella 1 1 127 195950 3 genus 0 0 species 1 28112 75 Tannerella forsythia no rank 1 0 51 2620507 0 species 1 712710 Tannerella sp. oral taxon HOT-286 51 375288 1 Parabacteroides 1 194 0 genus 3 no rank 1 0 93 2649774 2025876 Parabacteroides sp. CT06 93 0 1 species 1 species 0 Parabacteroides distasonis 100 823 775 333046 4 no rank 0 511434 412 0 1 genus species 1 0 412 Candidatus Azobacteroides pseudotrichonymphae 511435 909656 363 0 genus 3 0 1 species 376805 Bacteroides salanitronis 123 821 Bacteroides vulgatus 130 0 species 1 Bacteroides dorei 110 357276 1 species 0 2005519 36 0 family 2 397864 1 36 1 Barnesiella 0 genus 2 Barnesiella viscericola 35 397865 species 1 0 Prevotellaceae 3 787 1 171552 11 family 0 0 10 genus 838 Prevotella 7 784 1 589436 61 Prevotella fusca 0 species 1 118 2638335 1 no rank 0 0 1 species 652716 118 Prevotella sp. oral taxon 299 76123 33 Prevotella enoeca 0 1 species 1 species 0 48 Prevotella denticola 28129 99 Prevotella melaninogenica 28132 1 species 0 1177574 77 Prevotella jejuni 0 1 species 839 Prevotella ruminicola 67 0 1 species species 1 0 Prevotella dentalis 47 52227 Prevotella intermedia 227 28131 1 species 0 1 957 Bacteroidaceae 1 815 11 family 0 816 11 Bacteroides 956 1 0 genus 10 0 species 1 246787 Bacteroides cellulosilyticus 117 1 species 0 Bacteroides zoogleoformans 53 28119 species 1 0 207 Bacteroides fragilis 817 species 1 0 65 Bacteroides helcogenes 290053 28113 62 Bacteroides heparinolyticus 0 1 species species 1 0 Bacteroides ovatus 129 28116 0 species 1 47678 84 Bacteroides caccae 1796613 99 Bacteroides caecimuris 0 species 1 Bacteroides thetaiotaomicron 129 818 1 species 0 family 4 0 112 171550 0 2 genus 239759 Alistipes 2 1 43 214856 41 Alistipes finegoldii 0 species 1 1 69 2 Mucinivorans 1611681 genus 2 0 1433126 Mucinivorans hirudinis 67 0 1 species 0 6 family 2005520 366 0 2 genus 294702 Proteiniphilum 1 89 1 1642647 88 Proteiniphilum saccharofermentans 0 species 1 2 genus 0 Fermentimonas 3 203 1 1784836 1 species 0 Fermentimonas caenicola 200 1562970 307628 Petrimonas 1 74 1 0 2 genus 73 Petrimonas mucosa 1642646 1 species 0 family 3 0 139 171551 3 genus 0 1 139 Porphyromonas 6 836 837 Porphyromonas gingivalis 87 0 1 species 46 Porphyromonas asaccharolytica 28123 species 1 0 93 185291 1 no rank 0 1400053 Bacteroidales bacterium CF 93 0 1 species 2 family 0 111 1853231 0 genus 2 283168 8 Odoribacter 1 111 0 species 1 28118 Odoribacter splanchnicus 103 2005523 215 0 family 2 0 2 genus 346096 Paludibacter 1 1 215 214 Paludibacter propionicigenes 185300 species 1 0 1080 1 1 Marinilabiliales 1970189 order 10 0 0 family 2 1471398 278 1471399 278 1 8 Draconibacterium 0 genus 2 Draconibacterium orientale 270 1168034 1 species 0 558415 Marinilabiliaceae 1 200 1 0 3 family 1193324 199 1 Alkalitalea 7 0 2 genus 1 species 0 192 Alkalitalea saponilacus 889453 0 1 family 1573805 374 2060722 374 0 genus 1 0 species 1 1717717 Marinifilaceae bacterium SPP2 374 0 3 family 1970190 1 227 Salinivirgaceae 2 1 225 Salinivirga 2 1970191 2 genus 0 species 1 0 223 Salinivirga cyanobacteriivorans 1307839 0 58 class 768503 7668 1 Cytophagia 4 57 order 0 Cytophagales 18 1 7664 768507 2762301 524 0 family 2 2 genus 0 1 524 Marivirga 1 869806 0 species 1 1006 523 Marivirga tractuosa 1501348 Amoebophilaceae 2 1 279 0 4 family 0 genus 1 273135 96 2641185 96 0 no rank 1 0 species 1 249402 Cardinium endosymbiont of Encarsia pergandiella 96 0 2 genus 281119 Candidatus Amoebophilus 8 1 181 0 species 1 281120 173 Candidatus Amoebophilus asiaticus 89373 1 1595 6 Cytophagaceae 0 family 17 genus 2 0 79 1 1 Fibrella 861914 no rank 1 0 78 2620963 Fibrella sp. ES10-3-2-2 78 1834519 species 1 0 978 279 1 1 Cytophaga 0 genus 2 278 Cytophaga hutchinsonii 985 species 1 0 0 6 genus 107 1 589 Spirosoma 3 97 Spirosoma radiotolerans 1379870 1 species 0 1 species 0 142 Spirosoma montaniterrae 1178516 Spirosoma rigui 74 564064 1 species 0 Spirosoma sp. HA7 147 2057025 species 1 0 0 1 species 1211326 126 Spirosoma aerolatum 0 genus 2 105 1 Runella 331 1 330 Runella slithyformis 106 species 1 0 genus 2 0 1 Dyadobacter 126 1 120831 Dyadobacter fermentans 125 94254 1 species 0 319458 185 1 Leadbetterella 1 0 2 genus 316068 184 Leadbetterella byssophila 0 species 1 289 1853234 family 2 0 genus 2 0 4 Persicobacter 1 289 59740 2664020 285 0 no rank 1 285 Persicobacter sp. JZB09 1085624 species 1 0 0 family 9 563798 2 Cyclobacteriaceae 1 1543 390846 Echinicola 4 154 1 0 2 genus 150 Echinicola vietnamensis 390884 species 1 0 713 1 7 Cyclobacterium 68288 genus 3 0 0 1 species 104 333 Cyclobacterium marinum 373 Cyclobacterium amurskyense 320787 1 species 0 262 246875 genus 1 0 262 Algoriphagus sp. M8-2 1727163 species 1 0 232244 7 Belliella 412 1 0 genus 2 232259 405 Belliella baltica 0 1 species 1853232 Hymenobacteraceae 1 1 1261 0 16 family genus 8 0 668 1 11 Hymenobacter 89966 5 no rank 0 513 2615202 0 species 1 1385663 Hymenobacter sp. DG25A 75 1385664 60 Hymenobacter sp. DG25B 0 1 species 0 species 1 1484116 Hymenobacter sp. PAMC 26554 125 species 1 0 Hymenobacter sp. APR13 108 1356852 Hymenobacter sp. PAMC 26628 145 1484118 species 1 0 1 species 0 61 Hymenobacter swuensis 1446467 1 species 0 83 Hymenobacter sedentarius 1411621 0 genus 3 323449 1 218 1 Pontibacter species 1 0 Pontibacter akesuensis 101 388950 116 Pontibacter korlensis 400092 1 species 0 genus 4 0 3 Rufibacter 1 374 1379908 512763 159 Rufibacter tibetensis 0 1 species no rank 2 0 212 2639626 Rufibacter sp. DG15C 92 1379909 1 species 0 120 Rufibacter sp. DG31D 1379910 species 1 0 3 family 0 666 1 Bernardetiaceae 1 1937968 genus 2 0 665 1 2 Bernardetia 1937972 1 species 0 663 Bernardetia litoralis 999 3 family 0 1489 200667 0 2 genus 59739 615 1 Flammeovirga 2 1 no rank 0 613 2637820 0 species 1 1191459 613 Flammeovirga sp. MY04 340671 874 0 no rank 1 species 1 0 874 Flammeovirgaceae bacterium 311 1257021 Sphingobacteriia 6 4324 1 117747 23 class 0 200666 9 Sphingobacteriales 1 4318 0 order 22 1 4309 15 Sphingobacteriaceae 84566 family 21 0 423349 565 1 5 Mucilaginibacter 0 genus 4 1550579 215 Mucilaginibacter gotjawali 0 species 1 1 species 0 196 Mucilaginibacter sp. BJC16-A31 1234841 2617802 149 0 no rank 1 1300914 149 Mucilaginibacter sp. PAMC 26640 0 1 species 1649482 288 0 genus 1 288 Pseudopedobacter saltans 151895 1 species 0 426 84568 no rank 1 0 426 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 species 1 0 0 genus 2 929509 1 333 4 Solitalea species 1 0 Solitalea canadensis 329 995 0 6 genus 84567 1 1525 Pedobacter 16 984 234 Pedobacter heparinus 0 1 species Pedobacter steynii 275 430522 1 species 0 2628915 254 0 1 no rank 254 Pedobacter sp. PACM 27299 1727164 species 1 0 Pedobacter ginsengisoli 358 363852 1 species 0 1 species 0 Pedobacter cryoconitis 388 188932 genus 6 0 1157 1 12 Sphingobacterium 28453 4 no rank 0 975 2609468 Sphingobacterium sp. ML3W 288 1538644 1 species 0 0 1 species 1933220 236 Sphingobacterium sp. B29 species 1 0 Sphingobacterium sp. G1-14 266 2003121 0 species 1 743722 Sphingobacterium sp. 21 185 species 1 0 170 Sphingobacterium mizutaii 1010 phylum 2 0 122 65842 204430 122 1 Fibrobacteria 2 0 2 class 218872 120 0 1 order 204431 120 0 family 1 120 832 genus 1 0 120 Fibrobacter succinogenes 833 1 species 0 178 456828 1 phylum 0 0 genus 1 456826 178 0 species 1 456827 178 Candidatus Cloacimonas acidaminovorans 0 phylum 6 200940 833 0 6 class 67799 833 188710 1 Thermodesulfobacteriales 1 833 0 order 6 0 5 family 188711 Thermodesulfobacteriaceae 1 832 1 1740 601 0 genus 2 0 species 1 1295609 Thermodesulfobacterium geofontis 438 163 Thermodesulfobacterium commune 1741 species 1 0 0 genus 1 444090 117 species 1 0 117 Caldimicrobium thiodismutans 1653476 0 1 genus 241192 113 0 species 1 171695 Thermodesulfatator indicus 113 0 phylum 39 200918 3725 Thermotogae 13 3725 1 188708 39 class 0 1643947 1327 0 order 6 0 family 6 1643949 1327 Marinitoga 5 813 1 160798 3 genus 0 species 1 0 417 Marinitoga piezophila 149715 2640159 391 0 1 no rank 0 1 species 1545835 Marinitoga sp. 1137 391 0 1 genus 28236 225 0 species 1 69499 Petrotoga mobilis 225 0 genus 2 1511648 289 1 2 Defluviitoga species 1 0 Defluviitoga tunisiensis 287 1006576 0 4 order 1643946 266 266 1643948 family 4 0 0 genus 3 651456 1 Kosmotoga 188 1 0 species 1 1330330 Kosmotoga pacifica 110 651457 Kosmotoga olearia 77 0 species 1 1184396 78 0 genus 1 0 1 species 1184387 78 Mesotoga prima 2119 1 1 Thermotogales 2419 order 28 0 0 family 17 188709 1 669 3 Thermotogaceae genus 5 0 4 Pseudothermotoga 376 1 1643951 129 Pseudothermotoga lettingae 177758 species 1 0 96 Pseudothermotoga thermarum 119394 1 species 0 57487 Pseudothermotoga hypogea 21 0 species 1 1 species 0 126 Pseudothermotoga elfii 38322 2335 1 290 5 Thermotoga 0 genus 11 0 1 species 93930 21 Thermotoga naphthophila 93929 Thermotoga petrophila 18 0 1 species 2631113 77 0 no rank 4 1157948 14 Thermotoga sp. 2812B 0 1 species 0 1 species 126740 Thermotoga sp. RQ2 22 0 1 species 126738 26 Thermotoga sp. RQ7 species 1 0 15 Thermotoga sp. Cell2 1157947 1508419 Thermotoga caldifontis 20 0 species 1 2337 28 Thermotoga neapolitana 0 1 species Thermotoga profunda 88 1508420 species 1 0 Thermotoga maritima 33 2336 species 1 0 1643950 1 1449 Fervidobacteriaceae 2 0 10 family 5 genus 0 Thermosipho 6 1055 1 2420 species 1 0 Thermosipho melanesiensis 269 46541 0 no rank 2 2676525 489 1462747 235 Thermosipho sp. 1063 0 species 1 0 species 1 1437364 Thermosipho sp. 1070 254 Thermosipho africanus 291 2421 species 1 0 2422 392 1 4 Fervidobacterium 0 genus 4 0 species 1 2423 69 Fervidobacterium islandicum species 1 0 Fervidobacterium pennivorans 164 93466 2424 Fervidobacterium nodosum 155 0 species 1 4 phylum 0 486 68297 486 203486 4 class 0 0 4 order 203487 Dictyoglomales 2 486 1 484 203488 3 family 0 13 Dictyoglomus 1 1 484 0 3 genus 0 species 1 513050 Dictyoglomus turgidum 235 14 Dictyoglomus thermophilum 248 0 1 species 212 508458 phylum 8 0 649775 212 0 class 8 649776 212 0 8 order 0 8 family 649777 1 212 Synergistaceae 3 0 1 genus 508459 50 0 species 1 1197717 50 Cloacibacillus porcorum 49894 31 0 genus 1 97477 31 Acetomicrobium mobile 0 1 species 50 336260 1 genus 0 50 Thermovirga lienii 336261 species 1 0 0 genus 2 81466 1 Aminobacterium 1 63 0 species 1 81468 Aminobacterium colombiense 62 81461 15 1 1 Thermanaerovibrio 0 genus 2 0 species 1 81462 14 Thermanaerovibrio acidaminovorans 2323 249 0 3 no rank 0 clade 3 1783234 249 223 95901 2 clade 0 2 class 0 223 2497643 223 2497644 2 order 0 223 2497645 2 family 0 1551504 Candidatus Babela 1 1 223 0 2 genus Candidatus Babela massiliensis 222 673862 species 1 0 1 phylum 0 26 95818 26 1895827 no rank 1 0 species 1 0 26 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 32066 9994 0 phylum 24 24 class 0 Fusobacteriia 5 1 9994 203490 9989 1 11 Fusobacteriales 203491 order 23 0 1 2284 5 Leptotrichiaceae 1129771 family 10 0 300 32068 genus 1 0 Sebaldella termitidis 300 826 1 species 0 0 2 genus 168808 Sneathia 4 309 1 187101 305 Sneathia amnii 0 1 species 0 1 genus 34104 364 Streptobacillus moniliformis 364 34105 species 1 0 genus 5 0 1 1306 3 Leptotrichia 32067 2633022 973 0 3 no rank 1785996 367 Leptotrichia sp. oral taxon 847 0 1 species 0 species 1 712368 Leptotrichia sp. oral taxon 498 357 712357 Leptotrichia sp. oral taxon 212 249 0 1 species 1 species 0 Leptotrichia buccalis 330 40542 203492 7694 1 8 Fusobacteriaceae 0 family 12 0 genus 9 848 7409 1 19 Fusobacterium 910 Fusobacterium varium 856 species 1 0 860 1411 Fusobacterium periodonticum 0 species 1 850 400 Fusobacterium mortiferum 0 species 1 species 1 0 174 Fusobacterium necrophorum 859 Fusobacterium nucleatum 2895 851 species 1 0 species 1 0 848 Fusobacterium hwasookii 1583098 Fusobacterium gonidiaformans 286 849 species 1 0 861 466 Fusobacterium ulcerans 0 1 species genus 2 0 1 277 1 Ilyobacter 167639 1 species 0 Ilyobacter polytropus 276 167642 0 phylum 11 40117 763 class 11 0 1 763 5 Nitrospira 203693 189778 Nitrospirales 4 1 758 0 10 order 189779 1 Nitrospiraceae 754 1 0 family 9 169 1234 4 genus 0 1 species 0 47 Nitrospira japonica 1325564 42253 Nitrospira moscoviensis 50 0 species 1 1 species 0 32 Nitrospira defluvii 330214 0 species 1 1715989 40 Candidatus Nitrospira inopinata 1 genus 0 426 28261 426 Thermodesulfovibrio yellowstonii 28262 1 species 0 158 179 3 genus 0 0 1 species group 261386 41 1 species 0 Leptospirillum ferriphilum 41 178606 species group 1 0 60 261385 1 species 0 60 Leptospirillum sp. Group II 'CF-1' 1660083 species group 1 0 57 655606 180 Leptospirillum ferrooxidans 57 0 1 species 2299 200783 22 phylum 0 187857 2 Aquificae 2299 1 0 class 22 0 4 order 1485951 Desulfurobacteriales 1 348 1 0 family 3 558314 4 Desulfurobacteriaceae 1 347 1 genus 0 43 171868 Thermovibrio ammonificans 43 228745 1 species 0 0 1 genus 64159 300 Desulfurobacterium thermolithotrophum 300 64160 species 1 0 0 17 order 32069 1949 1 Aquificales 4 90150 111 0 1 no rank 412592 111 0 1 genus 0 1 species 412593 111 Thermosulfidibacter takaii 10 family 0 950 64898 0 1 genus 939 56 species 1 0 56 Hydrogenobacter thermophilus 940 168657 778 1 Hydrogenobaculum 38 0 6 genus 740 2622382 5 no rank 0 547146 154 Hydrogenobaculum sp. SN 0 species 1 547145 154 Hydrogenobaculum sp. SHO 0 species 1 154 Hydrogenobaculum sp. HO 547144 1 species 0 154 Hydrogenobaculum sp. 3684 547143 1 species 0 species 1 0 124 Hydrogenobaculum sp. Y04AAS1 380749 75905 82 0 2 genus 136094 44 Thermocrinis albus 0 species 1 Thermocrinis ruber 38 75906 1 species 0 2713 34 0 genus 1 0 species 1 63363 Aquifex aeolicus 34 5 family 0 884 224027 3 genus 0 662 1 Sulfurihydrogenibium 2 212790 337 2619248 1 no rank 0 1 species 0 Sulfurihydrogenibium sp. YO3AOP1 337 436114 species 1 0 323 Sulfurihydrogenibium azorense 309806 1 222 Persephonella 2 182899 2 genus 0 220 Persephonella marina 309805 1 species 0 0 clade 73 1783257 4584 2 phylum 0 70 256845 70 1313211 class 2 0 2 order 0 70 1 Victivallales 1 278082 no rank 1 0 69 1674876 69 Victivallales bacterium CCUG 44730 2094242 1 species 0 203682 2112 0 29 phylum 203683 7 Planctomycetia 1226 1 0 class 23 order 9 0 565 1 11 Planctomycetales 112 126 3 Planctomycetaceae 1 554 0 family 8 0 2 genus 1649490 Rubinisphaera 4 1 102 119 98 Rubinisphaera brasiliensis 0 species 1 1 284 Planctomyces 3 118 3 genus 0 281 2648843 2 no rank 0 0 1 species 1636152 148 Planctomyces sp. SH-PL62 species 1 0 Planctomyces sp. SH-PL14 133 1632864 52 1649480 1 genus 0 120 Planctopirus limnophila 52 0 1 species 0 genus 1 1936111 113 1891926 113 Fuerstia marisgermanicae 0 1 species 2691355 115 0 order 3 1 Gemmataceae 115 1 1914233 family 3 0 genus 2 0 1 114 2 Gemmata 113 0 1 no rank 2622970 112 112 Gemmata sp. SH-PL17 1630693 1 species 0 2691356 259 0 order 6 family 6 0 2 Isosphaeraceae 259 1 1763524 0 genus 2 466152 1 Singulisphaera 1 90 1 species 0 Singulisphaera acidiphila 89 466153 0 2 genus 127 1 65 Isosphaera 2 species 1 0 Isosphaera pallida 63 128 102 1763521 1 genus 0 102 Paludisphaera borealis 1387353 1 species 0 0 order 4 2691354 280 1 family 0 43 2691358 43 1676125 1 genus 0 1 species 0 43 Thermogutta terrifontis 1331910 2691357 237 0 3 family 0 genus 2 265488 118 1 1 Rhodopirellula Rhodopirellula baltica 117 265606 1 species 0 123 119 0 1 genus Pirellula staleyi 119 125 species 1 0 0 class 1 2517206 650 0 order 1 1127829 650 0 1 family 1127830 650 650 380738 1 genus 0 1 species 0 Candidatus Kuenenia stuttgartiensis 650 174633 0 class 5 666505 1 236 1 Phycisphaerae 0 order 2 666506 1 119 4 Phycisphaerales 666507 115 0 family 1 115 666508 genus 1 0 547188 Phycisphaera mikurensis 115 0 1 species 116 2483366 order 2 0 0 family 2 2483367 116 116 2483368 2 genus 0 0 1 species 1940790 54 Phycisphaerae bacterium L21-RPul-D3 62 Phycisphaerae bacterium ST-PulAB-D4 1941349 1 species 0 93 134625 2 phylum 0 1921781 93 0 class 2 93 1921782 order 2 0 93 1921783 2 family 0 genus 2 0 3 Kiritimatiella 93 1 1921784 90 Kiritimatiella glycovorans 1307763 species 1 0 0 phylum 21 74201 2 Verrucomicrobia 1 1130 0 2 no rank 417295 131 Verrucomicrobia bacterium IMCC26134 64 1637999 1 species 0 2026799 67 Verrucomicrobia bacterium 0 species 1 40 134549 2 class 0 Candidatus Xiphinematobacter 1 1 40 134550 2 genus 0 no rank 1 0 39 2648876 1704307 39 Candidatus Xiphinematobacter sp. Idaho Grape 0 1 species 0 class 8 414999 618 1 1 Opitutae 0 2 order 415001 272 0 2 family 415002 272 1 272 Coraliomargarita 1 442430 2 genus 0 0 species 1 395922 Coraliomargarita akajimensis 271 Opitutales 3 345 1 415000 5 order 0 0 4 family 134623 1 342 Opitutaceae 1 0 1 genus 1961799 100 0 species 1 1838286 100 Lacunisphaera limnophila 0 1 no rank 278955 126 1 species 0 Opitutaceae bacterium TAV5 126 794903 115 178440 genus 1 0 107709 115 Opitutus terrae 0 species 1 5 class 0 Verrucomicrobiae 1 132 1 203494 0 4 order 48461 Verrucomicrobiales 4 1 131 0 3 family 1647988 127 0 3 genus 239934 Akkermansia 3 1 127 0 species 1 1679444 Akkermansia glycaniphila 73 239935 51 Akkermansia muciniphila 0 species 1 0 class 3 1955630 207 717963 207 1 Methylacidiphilales 1 0 3 order 206 717964 2 family 0 0 2 genus 511745 206 511746 Methylacidiphilum infernorum 58 0 1 species 591154 Methylacidiphilum fumariolicum 148 0 species 1 1179 204428 phylum 19 0 1179 204429 19 class 0 0 13 order 51291 814 Chlamydiaceae 4 1 814 809 13 family 0 1113537 810 0 12 no rank 0 genus 12 810 1 810 11 Chlamydia 1 species 0 Chlamydia pecorum 85 85991 species 1 0 Chlamydia psittaci 76 83554 1457141 86 Chlamydia avium 0 species 1 1 species 0 Chlamydia abortus 65 83555 0 species 1 83556 Chlamydia felis 75 0 1 species 1457153 62 Chlamydia gallinacea 813 Chlamydia trachomatis 69 0 species 1 83557 Chlamydia caviae 79 0 species 1 species 1 0 Chlamydia suis 38 83559 Chlamydia muridarum 55 83560 species 1 0 Chlamydia pneumoniae 109 83558 species 1 0 0 6 order 1963360 1 365 Parachlamydiales 2 92712 69 0 1 family 0 genus 1 34093 69 species 1 0 Simkania negevensis 69 83561 3 family 0 215 92713 genus 2 0 1 Parachlamydia 126 1 83551 1 species 0 125 Parachlamydia acanthamoebae 83552 282132 89 0 genus 1 Candidatus Protochlamydia naegleriophila 89 389348 1 species 0 92714 79 0 family 1 79 71666 1 genus 0 species 1 0 79 Waddlia chondrophila 71667 2157 13395 0 superkingdom 248 0 phylum 192 28890 11020 1 1 Euryarchaeota 183968 961 0 class 39 2258 Thermococcales 1 1 961 0 39 order family 38 0 960 2259 2260 202 1 5 Pyrococcus 0 genus 8 1008460 Pyrococcus yayanosii 9 0 species 1 0 1 species 1609559 25 Pyrococcus kukulkanii species 1 0 Pyrococcus furiosus 41 2261 67 2629106 no rank 2 0 38 Pyrococcus sp. ST04 1183377 1 species 0 0 species 1 342949 Pyrococcus sp. NA2 29 19 Pyrococcus abyssi 29292 species 1 0 0 species 1 53953 36 Pyrococcus horikoshii 0 29 genus 2263 1 718 Thermococcus 9 Thermococcus gammatolerans 11 187878 1 species 0 1 species 0 6 Thermococcus nautili 195522 0 1 species 54077 10 Thermococcus barossii 172049 Thermococcus sibiricus 48 0 1 species Thermococcus paralvinellae 56 582419 species 1 0 14 Thermococcus onnurineus 342948 1 species 0 0 no rank 6 2627626 87 Thermococcus sp. AM4 21 246969 species 1 0 0 species 1 2008440 Thermococcus sp. 5-4 8 1 species 0 Thermococcus sp. EXT12c 5 2016361 Thermococcus sp. 4557 14 1042877 1 species 0 0 1 species 122420 Thermococcus sp. P6 9 1674923 30 Thermococcus sp. 2319x1 0 1 species 72803 Thermococcus siculi 251 0 1 species 0 1 species 2264 Thermococcus celer 10 0 species 1 1712654 Thermococcus piezophilus 12 1 species 0 3 Thermococcus peptonophilus 53952 Thermococcus radiotolerans 9 187880 1 species 0 277988 7 Thermococcus thioreducens 0 1 species 1505907 17 Thermococcus eurythermalis 0 species 1 Thermococcus barophilus 71 55802 species 1 0 0 species 1 71997 Thermococcus gorgonarius 5 Thermococcus kodakarensis 7 311400 1 species 0 2265 Thermococcus litoralis 24 0 1 species 0 1 species 49899 10 Thermococcus profundus 71998 6 Thermococcus pacificus 0 species 1 Thermococcus chitonophagus 26 54262 1 species 0 163003 8 Thermococcus cleftensis 0 species 1 0 1 species 110164 Thermococcus guaymasensis 11 genus 1 0 40 83867 40 Palaeococcus pacificus 971279 1 species 0 183980 244 0 7 class 244 2231 7 order 0 7 family 0 244 2232 0 2 genus 190818 58 species 1 0 29 Geoglobus acetivorans 565033 0 species 1 113653 29 Geoglobus ahangari 2233 143 0 4 genus 2234 29 Archaeoglobus fulgidus 0 1 species 32 Archaeoglobus profundus 84156 1 species 0 0 species 1 1316941 Archaeoglobus sulfaticallidus 47 35 Archaeoglobus veneficus 58290 species 1 0 1 genus 0 43 54260 54261 Ferroglobus placidus 43 0 1 species 0 15 clade 2283796 781 0 13 class 183967 677 1234666 42 0 no rank 1 42 methanogenic archaeon ISO4-H5 1495144 1 species 0 order 3 0 180 1235850 1577788 137 0 2 family 0 genus 1 1080709 97 1406512 97 Candidatus Methanomassiliicoccus intestinalis 0 1 species 40 1607807 1 genus 0 1577791 Candidatus Methanoplasma termitum 40 0 1 species 0 1 family 2517203 43 1291539 43 0 genus 1 0 species 1 1291540 Candidatus Methanomethylophilus alvus 43 455 2301 order 9 0 0 family 2 90142 182 genus 2 0 182 74968 0 1 species 74969 89 Ferroplasma acidiphilum 97393 93 Ferroplasma acidarmanus 0 species 1 0 family 2 46659 68 68 2302 2 genus 0 species 1 0 Thermoplasma volcanium 31 50339 species 1 0 37 Thermoplasma acidophilum 2303 0 family 3 1747776 1 81 3 Cuniculiplasmataceae 1747777 Cuniculiplasma 1 1 78 0 2 genus 0 1 species 1673428 Cuniculiplasma divulgatum 77 82 46630 family 1 0 0 genus 1 46631 82 82076 82 Picrophilus torridus 0 1 species 42 1919231 no rank 1 0 0 species 1 1054217 42 Thermoplasmatales archaeon BRNA1 1803510 104 0 clade 2 104 379546 genus 2 0 48 2633939 no rank 1 0 species 1 0 Aciduliprofundum sp. MAR08-339 48 673860 0 species 1 379547 Aciduliprofundum boonei 56 2290931 5185 0 92 clade 183963 1 2780 8 Halobacteria 0 class 51 order 14 0 1 1200 11 Haloferacales 1644055 0 1 no rank 2678336 58 756883 halophilic archaeon DL31 58 0 species 1 1963271 1 231 2 Halorubraceae 0 family 6 genus 2 0 1 Halopenitus 1 50 1209988 species 1 0 49 Halopenitus persicus 1048396 genus 1 0 87 1644057 0 1 species 755307 87 Salinigranum rubrum 92 56688 2 genus 0 Halorubrum trapanicum 47 29284 1 species 0 2247 Halorubrum lacusprofundi 45 0 1 species 0 family 6 1644056 1 900 4 Haloferacaceae 293431 650 0 genus 1 650 Haloquadratum walsbyi 293091 species 1 0 32 60846 1 genus 0 species 1 0 Halogeometricum borinquense 32 60847 214 2251 genus 3 0 85 Haloferax volcanii 2246 1 species 0 1 species 0 51 Haloferax mediterranei 2252 35746 Haloferax gibbonsii 78 0 species 1 1644060 9 Natrialbales 1 1127 0 order 15 1644061 1 1118 Natrialbaceae 6 0 14 family genus 2 0 74 88723 2622230 29 0 1 no rank Natrinema sp. J7-2 29 406552 species 1 0 species 1 0 Natrinema pellirubrum 45 69525 0 1 genus 203193 102 0 species 1 229731 Halobiforma lacisalsi 102 29287 Natronococcus 1 1 44 0 2 genus 0 species 1 29288 43 Natronococcus occultus 0 genus 1 1269201 35 35 2621923 1 no rank 0 0 species 1 1333523 35 Salinarchaeum sp. Harcht-Bsk1 0 1 genus 353799 17 0 1 species 353800 Halostagnicola larsenii 17 25 2256 1 genus 0 species 1 0 25 Natronobacterium gregoryi 44930 0 1 genus 63742 593 0 species 1 13769 Natrialba magadii 593 61 387342 genus 1 0 1 species 0 61 Halopiger xanaduensis 387343 1 161 Haloterrigena 1 121871 3 genus 0 62320 49 Haloterrigena turkmenica 0 1 species 1 species 0 111 Haloterrigena daqingensis 588898 2235 1 445 Halobacteriales 1 0 21 order 1 162 2 Halobacteriaceae 2236 family 8 0 1 Halobacterium 1 108 2239 genus 4 0 32 Halobacterium salinarum 2242 1 species 0 0 species 1 1407499 47 Halobacterium hubeiense 28 2668073 no rank 1 0 0 species 1 751944 Halobacterium sp. DL1 28 1 genus 0 16 1656823 1604004 Halanaeroarchaeum sulfurireducens 16 0 1 species 1980514 12 0 genus 1 1 species 0 Halodesulfurarchaeum formicicum 12 1873524 0 genus 1 332246 24 0 species 1 413810 Halalkalicoccus jeotgali 24 0 family 12 1963268 1 282 3 Haloarculaceae 0 2 genus 63743 52 2257 24 Natronomonas pharaonis 0 species 1 416273 Natronomonas moolapensis 28 0 1 species 1 genus 0 32 203135 1 species 0 32 Halomicrobium mukohataei 57705 38 1073987 1 genus 0 38 2648975 1 no rank 0 0 species 1 1932360 Halorientalis sp. IM1011 38 0 genus 5 2237 1 Haloarcula 1 108 1 species 0 29 Haloarcula hispanica 51589 0 species 1 1932004 23 Haloarcula taiwanensis 24 Haloarcula marismortui 2238 species 1 0 no rank 1 0 31 2624677 31 Haloarcula sp. CBA1115 1592728 species 1 0 2 genus 0 49 146825 33 Halorhabdus tiamatea 430914 1 species 0 0 1 species 146826 Halorhabdus utahensis 16 41 class 0 2405 224756 0 order 3 570264 89 89 570265 family 3 0 0 genus 3 570266 1 89 4 Methanocella 1 species 0 57 Methanocella arvoryzae 1175445 0 species 1 1175444 28 Methanocella conradii 0 26 order 94695 2015 1 Methanosarcinales 6 143067 84 0 3 family 2222 1 84 Methanothrix 3 0 3 genus Methanosaeta harundinacea 40 301375 species 1 0 Methanothrix soehngenii 41 2223 1 species 0 0 22 family 2206 1 1925 Methanosarcinaceae 3 1 genus 0 47 2220 0 1 species 420950 47 Methanolobus psychrophilus 2225 151 0 genus 2 0 species 1 29291 67 Methanococcoides burtonii 0 species 1 2226 Methanococcoides methylutens 84 genus 13 0 2 Methanosarcina 1342 1 2207 Methanosarcina siciliae 168 38027 species 1 0 291 2644672 4 no rank 0 0 species 1 1434099 Methanosarcina sp. Kolksee 88 0 species 1 1434103 Methanosarcina sp. WWM596 62 species 1 0 Methanosarcina sp. WH1 58 1434102 1 species 0 Methanosarcina sp. MTP4 83 1434100 1 species 0 331 Methanosarcina barkeri 2208 170861 Methanosarcina lacustris 69 0 species 1 2210 Methanosarcina thermophila 58 0 species 1 0 species 1 2215 101 Methanosarcina vacuolata 0 species 1 2214 78 Methanosarcina acetivorans 0 1 species 2209 188 Methanosarcina mazei Methanosarcina horonobensis 56 418008 species 1 0 genus 1 0 137 2321 Methanohalobium evestigatum 137 2322 species 1 0 101191 58 0 genus 1 0 1 species 101192 Methanomethylovorans hollandica 58 2 genus 0 110 2175 46 Methanohalophilus halophilus 2177 species 1 0 species 1 0 Methanohalophilus mahii 64 2176 196136 77 0 1 genus 1 species 0 Methanosalsum zhilinae 77 39669 0 order 12 2191 1 301 3 Methanomicrobiales 0 family 4 1198451 88 genus 1 0 44 475087 0 species 1 475088 44 Methanosphaerula palustris 0 3 genus 395331 1 44 Methanoregula 3 0 species 1 882104 22 Methanoregula formicica 19 Methanoregula boonei 358766 1 species 0 1 family 0 24 88404 0 1 genus 2192 24 83984 24 Methanocorpusculum labreanum 0 species 1 2194 138 0 5 family 0 genus 2 230355 36 1 1 Methanolacinia 0 species 1 54120 Methanolacinia petrolearia 35 45989 102 0 genus 3 1 species 0 36 Methanoculleus bourgensis 83986 2198 43 Methanoculleus marisnigri 0 species 1 0 1 no rank 2619537 23 0 1 species 86622 23 Methanoculleus sp. MAB1 48 196137 1 family 0 0 genus 1 2202 48 2203 48 Methanospirillum hungatei 0 species 1 2283794 3848 0 clade 38 1911 183925 class 22 0 2158 1911 0 22 order 0 family 1 2178 144 0 1 genus 2179 144 0 species 1 2180 Methanothermus fervidus 144 2159 1 1767 Methanobacteriaceae 2 0 21 family 2172 967 0 genus 6 0 1 species 294671 Methanobrevibacter olleyae 215 2638681 249 0 no rank 2 0 species 1 1609968 131 Methanobrevibacter sp. YE315 224719 Methanobrevibacter sp. AbM4 118 0 1 species 219 Methanobrevibacter smithii 2173 species 1 0 species 1 0 122 Methanobrevibacter ruminantium 83816 230361 Methanobrevibacter millerae 162 0 1 species 1 547 4 Methanobacterium 2160 genus 8 0 135 2627676 2 no rank 0 Methanobacterium sp. MB1 69 1379702 species 1 0 1 species 0 Methanobacterium sp. MZ-A1 66 1911685 118062 73 Methanobacterium congolense 0 species 1 868131 108 Methanobacterium paludis 0 species 1 877455 Methanobacterium lacus 106 0 species 1 0 species 1 59277 Methanobacterium subterraneum 50 1 species 0 71 Methanobacterium formicicum 2162 145260 1 Methanothermobacter 71 1 0 genus 5 species 1 0 19 Methanothermobacter wolfeii 145261 22 Methanothermobacter marburgensis 145263 species 1 0 0 1 no rank 2631116 16 866790 Methanothermobacter sp. CaT2 16 0 species 1 145262 Methanothermobacter thermautotrophicus 13 0 1 species genus 1 0 180 2316 species 1 0 Methanosphaera stadtmanae 180 2317 183939 1937 0 16 class 2182 1937 1 1 Methanococcales 0 order 16 7 family 0 1 1016 Methanococcaceae 1 2183 1 genus 0 111 155862 species 1 0 111 Methanothermococcus okinawensis 155863 5 genus 0 904 1 Methanococcus 1 2184 2187 125 Methanococcus vannielii 0 1 species 1 species 0 135 Methanococcus aeolicus 42879 0 species 1 39152 Methanococcus maripaludis 424 0 1 species 2188 219 Methanococcus voltae 920 196117 family 8 0 196118 11 Methanocaldococcus 782 1 0 genus 7 1 species 0 Methanocaldococcus infernus 97 67760 109 Methanocaldococcus jannaschii 2190 species 1 0 2641196 155 0 no rank 1 155 Methanocaldococcus sp. FS406-22 644281 1 species 0 0 1 species 73913 Methanocaldococcus vulcanius 145 0 species 1 83171 Methanocaldococcus fervens 134 0 species 1 1301915 Methanocaldococcus bathoardescens 131 196119 138 0 1 genus 2189 Methanotorris igneus 138 0 species 1 2358 1783275 clade 55 0 phylum 40 0 1102 28889 1102 183924 40 class 0 174 2266 12 order 0 121 2267 7 family 0 2276 17 1 1 Pyrobaculum 0 genus 2 1 species 0 16 Pyrobaculum islandicum 2277 0 genus 2 2270 26 11 Thermoproteus uzoniensis 184117 1 species 0 0 1 species 2271 Thermoproteus tenax 15 0 genus 1 76886 25 76887 25 Caldivirga maquilingensis 0 1 species 0 genus 2 164450 53 species 1 0 Vulcanisaeta moutnovskia 30 985052 Vulcanisaeta distributa 23 164451 1 species 0 0 family 5 114378 53 2268 1 Thermofilum 1 53 0 genus 5 species 1 0 4 Thermofilum pendens 2269 Thermofilum adornatus 11 1365176 1 species 0 1483572 Thermofilum carboxyditrophus 21 0 species 1 Thermofilum uzonense 16 1550241 species 1 0 871006 95 0 2 order 255472 86 0 1 family 200414 86 0 genus 1 0 species 1 200415 Caldisphaera lagunensis 86 1 family 0 9 871007 0 1 genus 105850 9 242703 9 Acidilobus saccharovorans 0 species 1 234 114380 15 order 0 0 family 11 2272 1 Desulfurococcaceae 1 171 477695 9 1 1 Thermogladius 0 genus 2 1200300 8 Thermogladius calderae 0 1 species 54258 21 0 genus 2 54259 14 Ignicoccus islandicus 0 1 species species 1 0 Ignicoccus hospitalis 7 160233 2273 24 0 2 genus 0 species 1 2275 5 Desulfurococcus mucosus 19 Desulfurococcus amylolyticus 94694 1 species 0 12 54253 genus 1 0 12 Thermosphaera aggregans 54254 species 1 0 1 Staphylothermus 104 1 2279 genus 3 0 Staphylothermus marinus 62 2280 1 species 0 1 species 0 Staphylothermus hellenicus 41 84599 4 family 0 Pyrodictiaceae 1 1 63 2307 22 54251 genus 1 0 Pyrolobus fumarii 22 54252 species 1 0 32 54247 1 genus 0 54248 32 Hyperthermus butylicus 0 species 1 0 genus 1 2308 8 1 species 0 8 Pyrodictium delaneyi 1273541 2281 599 1 Sulfolobales 1 0 11 order 0 10 family 118883 598 1 Sulfolobaceae 1 81 2100760 genus 1 0 81 Sulfolobus solfataricus 2287 species 1 0 60 41980 genus 2 0 1006005 Metallosphaera cuprina 32 0 species 1 0 1 species 43687 28 Metallosphaera sedula 0 4 genus 2284 Sulfolobus 1 258 1 0 species 1 2285 39 Sulfolobus acidocaldarius 0 1 species 43080 142 Sulfolobus islandicus 2641160 76 0 1 no rank 0 1 species 1891280 Sulfolobus sp. A20 76 80 12914 genus 1 0 Acidianus hospitalis 80 563177 1 species 0 1 genus 0 118 69655 111955 118 Sulfolobus tokodaii 0 1 species 0 2 phylum 51967 18 1 Candidatus Korarchaeum 18 1 498845 genus 2 0 1 species 0 17 Candidatus Korarchaeum cryptofilum 498846 phylum 13 0 1238 651137 494 1643678 3 class 0 order 1 0 319 1968909 0 1 family 1968910 319 498374 319 0 1 genus 319 Candidatus Nitrosocaldus islandicus 2045011 species 1 0 175 1 1 Nitrososphaerales 1033996 order 2 0 174 1033997 family 1 0 genus 1 0 174 497726 1 species 0 Nitrososphaera viennensis 174 1034015 651142 234 0 no rank 5 genus 3 0 1 Candidatus Nitrosotenuis 76 1 1825023 1 species 0 40 Candidatus Nitrosotenuis sp. AQ6f 1846278 35 Candidatus Nitrosotenuis cloacae 1603555 species 1 0 158 1 Candidatus Nitrosopelagicus 1 1593364 2 genus 0 species 1 0 Candidatus Nitrosopelagicus brevis 157 1410606 510 1 3 Nitrosopumilales 31932 order 5 0 family 4 0 507 338190 0 1 genus 1993653 200 1898749 200 Candidatus Nitrosomarinus catalina 0 1 species genus 3 0 1 Nitrosopumilus 307 1 338191 Candidatus Nitrosopumilus adriaticus 154 1580092 1 species 0 species 1 0 152 Candidatus Nitrosopumilus sediminis 1229909 17 1783276 1 clade 0 17 1801631 1 phylum 0 17 2490204 1 genus 0 1920749 Candidatus Micrarchaeota archaeon Mia14 17 0 1 species 0 1 name 0