members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 17937 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 30 4542 10804336 superkingdom 0 248 27573 2157 1783276 34 0 1 clade phylum 34 1801631 1 0 34 2490204 1 0 genus 1920749 34 1 0 Candidatus Micrarchaeota archaeon Mia14 species 43 0 2522 1783275 clade 1529 28889 0 33 phylum class 0 33 183924 1529 order 2266 359 11 0 family 0 4 114378 167 genus 4 0 167 2268 1 Thermofilum adornatus 0 46 1365176 species species 26 1550241 1 Thermofilum uzonense 0 2269 28 1 0 Thermofilum pendens species 67 1483572 Thermofilum carboxyditrophus 0 1 species 1 2 192 2267 Thermoproteaceae 0 7 family genus 0 1 76886 59 76887 59 0 Caldivirga maquilingensis 1 species 49 164450 0 2 genus 1 0 Vulcanisaeta distributa 164451 22 species 1 0 Vulcanisaeta moutnovskia 27 985052 species 2 0 65 2270 genus 30 2271 1 0 Thermoproteus tenax species species 184117 35 0 Thermoproteus uzoniensis 1 genus 2276 17 1 0 1 Pyrobaculum islandicum 0 17 2277 species 114380 191 11 0 order 158 2272 0 8 family 28 477695 0 1 genus species Thermogladius calderae 0 1 28 1200300 genus 0 2 2273 21 species 9 94694 1 Desulfurococcus amylolyticus 0 0 Desulfurococcus mucosus 1 2275 12 species genus 21 54258 0 2 species Ignicoccus islandicus 0 1 4 54259 1 0 Ignicoccus hospitalis 17 160233 species 54253 21 1 0 genus species 21 54254 0 Thermosphaera aggregans 1 67 2279 0 2 genus species 39 2280 Staphylothermus marinus 0 1 0 Staphylothermus hellenicus 1 28 84599 species family 3 0 33 2307 genus 1 0 2308 18 Pyrodictium delaneyi 0 1 1273541 18 species 0 1 54251 11 genus species 1 Pyrolobus fumarii 0 54252 11 genus 0 1 54247 4 Hyperthermus butylicus 0 1 54248 4 species 2 0 140 871006 order family 98 255472 0 1 200414 98 1 0 genus species 0 Caldisphaera lagunensis 1 98 200415 family 871007 42 1 0 genus 105850 42 0 1 species Acidilobus saccharovorans 0 1 42 242703 839 2281 0 9 order family 839 118883 0 Sulfolobaceae 9 9 1 genus 0 1 69655 107 species 111955 107 1 0 Sulfolobus tokodaii 0 1 2100760 141 genus species Sulfolobus solfataricus 0 1 2287 141 genus 2 0 41980 58 species 22 1006005 1 0 Metallosphaera cuprina 36 43687 Metallosphaera sedula 0 1 species 0 3 2284 322 genus species 0 Sulfolobus acidocaldarius 1 2285 54 1 0 2641160 95 no rank 1 0 Sulfolobus sp. A20 1891280 95 species 1 0 Sulfolobus islandicus 173 43080 species 0 1 202 12914 genus 202 563177 1 0 Acidianus hospitalis species phylum 1 0 21 51967 1 0 21 498845 genus species 21 498846 1 Candidatus Korarchaeum cryptofilum 0 phylum 9 0 972 651137 order 3 0 31932 544 family 0 3 544 338190 genus 0 2 338191 365 1229909 173 Candidatus Nitrosopumilus sediminis 0 1 species 1580092 192 Candidatus Nitrosopumilus adriaticus 0 1 species 1 0 1993653 179 genus species 179 1898749 1 0 Candidatus Nitrosomarinus catalina class 140 1643678 0 3 order 89 1033996 2 0 family 1033997 89 0 2 1 1 genus 89 497726 2 0 Nitrososphaera species 1 Nitrososphaera viennensis 0 1034015 88 0 1 1968909 51 order family 1968910 51 1 0 0 1 51 498374 genus Candidatus Nitrosocaldus islandicus 0 1 51 2045011 species 0 3 651142 288 no rank genus 0 1 1593364 172 1410606 172 1 Candidatus Nitrosopelagicus brevis 0 species genus 0 2 116 1825023 1 Candidatus Nitrosotenuis sp. AQ6f 0 1846278 56 species species 60 1603555 1 0 Candidatus Nitrosotenuis cloacae 1 1 phylum 28890 25017 204 0 Euryarchaeota 8 0 183980 653 class 653 2231 8 0 order 8 0 2232 653 family 1 0 54260 105 genus 105 54261 Ferroglobus placidus 0 1 species 403 2233 0 Archaeoglobus 5 genus 1 1 0 Archaeoglobus profundus 1 39 84156 species 1 0 Archaeoglobus sulfaticallidus 134 1316941 species 2234 170 1 0 Archaeoglobus fulgidus species 1 0 Archaeoglobus veneficus 59 58290 species genus 145 190818 0 2 species 113653 58 1 Geoglobus ahangari 0 87 565033 1 Geoglobus acetivorans 0 species 38 0 6873 2283794 clade 183925 3745 22 0 Methanobacteria class 1 4 order 0 21 2158 3741 family 182 2178 0 1 1 0 182 2179 genus 182 2180 1 Methanothermus fervidus 0 species family 2159 3559 0 20 90 145260 0 4 genus species 17 145262 1 0 Methanothermobacter thermautotrophicus species 1 0 Methanothermobacter marburgensis 145263 20 145261 24 0 Methanothermobacter wolfeii 1 species 1 0 2631116 29 no rank species 1 Methanothermobacter sp. CaT2 0 29 866790 2316 618 1 0 genus 2317 618 1 0 Methanosphaera stadtmanae species 2 1 genus 2172 2031 7 Methanobrevibacter 0 402 2173 0 Methanobrevibacter smithii 1 species 1 Methanobrevibacter ruminantium 0 443 83816 species 0 2 394 2638681 no rank 224719 192 1 Methanobrevibacter sp. AbM4 0 species 1609968 202 0 Methanobrevibacter sp. YE315 1 species species 1 Methanobrevibacter olleyae 0 294671 340 1 0 Methanobrevibacter millerae 230361 450 species 1 1 genus 2160 820 Methanobacterium 0 8 species 1 0 Methanobacterium congolense 75 118062 108 868131 Methanobacterium paludis 0 1 species species 133 877455 1 0 Methanobacterium lacus no rank 0 2 191 2627676 74 1379702 Methanobacterium sp. MB1 0 1 species species 1911685 117 1 0 Methanobacterium sp. MZ-A1 species 0 Methanobacterium formicicum 1 172 2162 species 140 59277 1 0 Methanobacterium subterraneum 2 1 class 3128 183939 16 Methanococci 0 15 0 Methanococcales 2182 3126 order 1 11 196117 1120 8 0 family 964 196118 6 0 genus 188 1301915 Methanocaldococcus bathoardescens 0 1 species 106 73913 0 Methanocaldococcus vulcanius 1 species 221 2190 0 Methanocaldococcus jannaschii 1 species 1 Methanocaldococcus infernus 0 81 67760 species 2641196 205 0 1 no rank species 205 644281 0 Methanocaldococcus sp. FS406-22 1 Methanocaldococcus fervens 0 1 163 83171 species 156 196119 2 Methanotorris 0 genus 1 1 species 155 2189 Methanotorris igneus 0 1 0 Methanococcaceae 6 1995 2183 family 1 2 2184 1741 4 0 genus species 0 Methanococcus maripaludis 1 1047 39152 1 Methanococcus voltae 0 219 2188 species 344 2187 Methanococcus vannielii 0 1 species 131 42879 Methanococcus aeolicus 0 1 species 252 155862 1 0 genus 252 155863 Methanothermococcus okinawensis 0 1 species clade 2290931 13957 101 0 class 224756 8123 0 Methanomicrobia 44 7 1 5880 94695 Methanosarcinales 0 25 order 1 5 378 143067 2 0 family genus 0 2 378 2222 286 301375 1 Methanosaeta harundinacea 0 species species 2223 92 1 Methanothrix soehngenii 0 22 Methanosarcinaceae 0 2206 5497 family 1 4 305 101191 0 1 genus species 305 101192 1 Methanomethylovorans hollandica 0 2 0 2175 233 genus 2177 108 1 Methanohalophilus halophilus 0 species species 0 Methanohalophilus mahii 1 125 2176 genus 0 1 2220 290 species 420950 290 0 Methanolobus psychrophilus 1 0 2 2225 629 genus 29291 306 0 Methanococcoides burtonii 1 species species 2226 323 1 0 Methanococcoides methylutens genus 0 1 196136 191 39669 191 Methanosalsum zhilinae 0 1 species 7 1 genus 0 Methanosarcina 13 2207 3618 species Methanosarcina horonobensis 0 1 418008 325 720 2208 Methanosarcina barkeri 0 1 species 1 Methanosarcina siciliae 0 38027 210 species species 0 Methanosarcina lacustris 1 170861 209 no rank 0 4 2644672 912 1434099 322 1 Methanosarcina sp. Kolksee 0 species 1434103 190 1 0 Methanosarcina sp. WWM596 species 1 0 Methanosarcina sp. MTP4 173 1434100 species species 1 Methanosarcina sp. WH1 0 227 1434102 species 1 0 Methanosarcina acetivorans 189 2214 512 2209 1 Methanosarcina mazei 0 species 0 Methanosarcina vacuolata 1 2215 314 species species 220 2210 1 0 Methanosarcina thermophila genus 2321 227 1 0 species 2322 227 0 Methanohalobium evestigatum 1 0 Methanomicrobiales 14 2191 1887 order 1 3 family 88404 166 1 0 0 1 2192 166 genus 1 Methanocorpusculum labreanum 0 166 83984 species 1198451 691 0 4 family 0 1 237 475087 genus species 237 475088 Methanosphaerula palustris 0 1 3 Methanoregula 0 454 395331 genus 1 3 species 62 358766 1 0 Methanoregula boonei 882104 389 0 Methanoregula formicica 1 species family 674 2194 0 6 444 45989 4 0 Methanoculleus genus 1 5 no rank 0 1 160 2619537 Methanoculleus sp. MAB1 0 1 160 86622 species 0 Methanoculleus marisnigri 1 117 2198 species 162 83986 0 Methanoculleus bourgensis 1 species genus 230355 230 2 Methanolacinia 0 1 1 species Methanolacinia petrolearia 0 1 229 54120 family 0 2 353 196137 1 1 0 Methanospirillum 2 2202 353 genus 0 Methanospirillum hungatei 1 2203 352 species order 570264 349 Methanocellales 0 4 4 1 2 1 family Methanocellaceae 0 3 570265 345 genus 570266 343 0 2 1175444 53 Methanocella conradii 0 1 species 0 Methanocella arvoryzae 1 290 1175445 species class 183963 5834 Halobacteria 0 57 35 1 1644060 1795 16 Natrialbales 0 order 1 6 18 1 family 1789 1644061 15 0 Natrialbaceae genus 180 203193 0 1 species 229731 180 1 Halobiforma lacisalsi 0 182 387342 1 0 genus 182 387343 Halopiger xanaduensis 0 1 species 1 0 241 353799 genus species 1 0 Halostagnicola larsenii 241 353800 genus Natrinema 0 3 88723 322 1 1 no rank 2622230 141 0 1 141 406552 1 0 Natrinema sp. J7-2 species 180 69525 Natrinema pellirubrum 0 1 species 76 2256 0 1 genus species 0 Natronobacterium gregoryi 1 44930 76 genus 0 1 29287 147 species 147 29288 Natronococcus occultus 0 1 123 1269201 2 Salinarchaeum 0 genus 1 4 119 2621923 0 1 no rank species 119 1333523 0 Salinarchaeum sp. Harcht-Bsk1 1 genus 2 0 354 121871 0 Haloterrigena turkmenica 1 149 62320 species species 205 588898 1 Haloterrigena daqingensis 0 Natrialba 0 2 63742 146 genus 1 1 species 0 Natrialba magadii 1 145 13769 2235 2390 Halobacteriales 0 24 order 1 35 family 0 8 2236 875 genus 96 1980514 0 1 species 1873524 96 1 0 Halodesulfurarchaeum formicicum 286 1656823 1 0 genus 286 1604004 Halanaeroarchaeum sulfurireducens 0 1 species 104 332246 2 Halalkalicoccus 0 genus 1 2 1 0 Halalkalicoccus jeotgali 413810 102 species 2 1 genus 2239 389 4 0 Halobacterium no rank 2668073 136 1 0 751944 136 1 Halobacterium sp. DL1 0 species species 180 1407499 0 Halobacterium hubeiense 1 71 2242 Halobacterium salinarum 0 1 species 1963268 1480 Haloarculaceae 0 15 family 1 10 genus 111 1073987 2 0 Halorientalis 2 1 no rank 0 1 2648975 109 species 1 Halorientalis sp. IM1011 0 1932360 109 7 1 genus 2237 641 5 0 Haloarcula no rank 2624677 119 0 1 species 1 0 Haloarcula sp. CBA1115 119 1592728 190 1932004 0 Haloarcula taiwanensis 1 species 1 0 Haloarcula marismortui 195 2238 species species 0 Haloarcula hispanica 1 130 51589 146825 336 3 Halorhabdus 0 genus 1 1 species 0 Halorhabdus utahensis 1 146826 213 Halorhabdus tiamatea 0 1 122 430914 species genus 2 0 63743 260 2257 103 0 Natronomonas pharaonis 1 species 416273 157 0 Natronomonas moolapensis 1 species genus 0 Halomicrobium 2 122 203135 6 1 116 57705 0 Halomicrobium mukohataei 1 species 1644055 1614 Haloferacales 0 16 order 1 29 family 882 1644056 0 6 0 Haloferax 4 2251 669 genus 1 6 1 Haloferax volcanii 0 2246 255 species 1 Haloferax gibbonsii 0 309 35746 species species 2252 99 1 Haloferax mediterranei 0 genus 293431 100 1 0 1 Haloquadratum walsbyi 0 100 293091 species 0 1 113 60846 genus species 113 60847 1 0 Halogeometricum borinquense 4 1 family 8 0 Halorubraceae 586 1963271 genus 107 1209988 Halopenitus 0 2 2 1 1048396 105 Halopenitus persicus 0 1 species 1 5 246 1644057 0 Salinigranum 2 genus species 755307 241 1 0 Salinigranum rubrum 0 Halorubrum 3 229 56688 genus 1 6 149 29284 0 Halorubrum trapanicum 1 species 74 2247 1 0 Halorubrum lacusprofundi species 0 1 2678336 117 no rank species 1 0 halophilic archaeon DL31 756883 117 1998 183968 40 0 Thermococci class 1 10 order 1988 2258 Thermococcales 0 39 34 1 1 6 1954 2259 38 0 Thermococcaceae family 1 0 83867 39 genus 971279 39 1 Palaeococcus pacificus 0 species 0 7 2260 359 genus species Pyrococcus abyssi 0 1 29292 23 36 1609559 1 0 Pyrococcus kukulkanii species 2261 116 0 Pyrococcus furiosus 1 species species 48 1008460 0 Pyrococcus yayanosii 1 species 0 Pyrococcus horikoshii 1 57 53953 79 2629106 0 2 no rank 1 Pyrococcus sp. ST04 0 70 1183377 species species 9 342949 1 Pyrococcus sp. NA2 0 10 1 genus 1550 2263 29 0 Thermococcus species 1 0 Thermococcus profundus 49899 40 0 Thermococcus peptonophilus 1 53952 80 species 1 0 Thermococcus sibiricus 172049 48 species species 1 0 Thermococcus cleftensis 35 163003 179 55802 1 0 Thermococcus barophilus species 195522 95 0 Thermococcus nautili 1 species Thermococcus barossii 0 1 33 54077 species Thermococcus siculi 0 1 72803 60 species species 0 Thermococcus radiotolerans 1 187880 52 1 Thermococcus gorgonarius 0 71997 96 species Thermococcus kodakarensis 0 1 311400 47 species 1 Thermococcus eurythermalis 0 1505907 61 species Thermococcus thioreducens 0 1 73 277988 species 274 2627626 6 0 no rank 1 0 Thermococcus sp. AM4 79 246969 species species 122420 25 1 0 Thermococcus sp. P6 Thermococcus sp. 4557 0 1 1042877 54 species 0 Thermococcus sp. 5-4 1 2008440 33 species species 2016361 45 1 Thermococcus sp. EXT12c 0 Thermococcus sp. 2319x1 0 1 38 1674923 species 0 Thermococcus gammatolerans 1 46 187878 species species Thermococcus onnurineus 0 1 342948 20 Thermococcus guaymasensis 0 1 76 110164 species 0 Thermococcus paralvinellae 1 582419 52 species Thermococcus litoralis 0 1 43 2265 species Thermococcus pacificus 0 1 37 71998 species species 16 1712654 1 0 Thermococcus piezophilus 54262 27 Thermococcus chitonophagus 0 1 species 2264 50 0 Thermococcus celer 1 species 16 0 2283796 1535 clade clade 1803510 186 0 2 186 379546 2 0 genus no rank 1 0 2633939 106 Aciduliprofundum sp. MAR08-339 0 1 673860 106 species 1 0 Aciduliprofundum boonei 80 379547 species class 0 Thermoplasmata 14 1349 183967 10 1 order 0 7 2301 674 146 90142 0 2 family genus 74968 146 0 2 97393 82 Ferroplasma acidarmanus 0 1 species 0 Ferroplasma acidiphilum 1 64 74969 species no rank 0 1 1919231 126 species 0 Thermoplasmatales archaeon BRNA1 1 126 1054217 family 2 0 46659 84 2302 84 0 2 genus Thermoplasma volcanium 0 1 41 50339 species 1 0 Thermoplasma acidophilum 43 2303 species family 0 1 194 46630 1 0 194 46631 genus species 82076 194 1 Picrophilus torridus 0 family 0 1 1747776 124 1 0 1747777 124 genus 1 Cuniculiplasma divulgatum 0 124 1673428 species order 5 0 510 1235850 Methanomassiliicoccaceae 0 3 372 1577788 family 1 1 genus 0 1 1080709 255 species 1406512 255 1 0 Candidatus Methanomassiliicoccus intestinalis genus 116 1607807 1 0 116 1577791 1 Candidatus Methanoplasma termitum 0 species 138 2517203 0 2 family 3 1 genus 138 1291539 0 Candidatus Methanomethylophilus 2 species 1291540 135 1 0 Candidatus Methanomethylophilus alvus no rank 1234666 155 1 0 1495144 155 0 methanogenic archaeon ISO4-H5 1 species 58 1 superkingdom Bacteria 0 4263 10758826 2 phylum 0 2 2138240 152 152 2138243 0 2 class order 2 0 152 2138246 2138247 152 Coprothermobacteraceae 0 2 family 1 1 genus 68335 151 1 0 1 0 Coprothermobacter proteolyticus 151 35786 species phylum 0 2 675 68297 class 0 2 203486 675 order 2 0 675 203487 family 0 2 675 203488 0 2 675 13 genus species 1 0 Dictyoglomus thermophilum 14 292 species Dictyoglomus turgidum 0 1 513050 383 0 5 437 200938 phylum 8 1 class 0 Chrysiogenetes 5 437 118001 429 189769 4 Chrysiogenales 0 order 1 9 family 420 189770 3 Chrysiogenaceae 0 9 1 1 1 genus 393029 411 0 Desulfurispirillum 2 936456 410 Desulfurispirillum indicum 0 1 species clade 350 0 1783270 5088898 clade 68336 5086184 0 338 1134404 1365 5 0 phylum 5 0 Ignavibacteria 1365 795747 class 1 1 1364 795748 4 0 Ignavibacteriales order 1 2 795749 584 2 Ignavibacteriaceae 0 family 1 11 573 795750 0 1 genus species Ignavibacterium album 0 1 591197 573 family 1334117 778 0 1 genus 1134403 778 0 1 species 1 0 Melioribacter roseus 1134405 778 phylum 976 5077686 313 0 Bacteroidetes 32 1 20 1 class 0 Flavobacteriia 141 117743 118688 order Flavobacteriales 0 140 200644 118668 82 1 2 1 family 1853230 1018 Crocinitomicaceae 0 3 genus 1016 332102 0 Fluviicola 2 4 1 1012 191579 1 Fluviicola taffensis 0 species family 0 9 845 39782 8 1 genus 34098 845 9 0 Blattabacterium 1653831 207 0 Blattabacterium cuenoti 1 species species 102 164514 1 Blattabacterium punctulatus 0 0 6 2647581 528 no rank 367806 25 Blattabacterium sp. (Blatta orientalis) 0 1 species species 1 Blattabacterium sp. (Nauphoeta cinerea) 0 138 1316444 species Blattabacterium sp. (Mastotermes darwiniensis) 0 1 169 39768 1 0 Blattabacterium sp. (Blaberus giganteus) 1186051 55 species species 367488 47 1 0 Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Blattella germanica) 0 1 624186 94 species family 0 2 1219 1333713 1 5 267986 1219 0 Owenweeksia 2 genus species 1214 253245 1 Owenweeksia hongkongensis 0 family 0 1 1755828 167 167 1755829 0 1 genus species 1 Ichthyobacterium seriolicida 0 242600 167 1 483 Flavobacteriaceae 0 100 49546 76740 family 569 112040 0 1 genus species 63186 569 Zobellia galactanivorans 0 1 genus 1 0 261827 739 1736674 739 0 Algibacter alginicilyticus 1 species 336276 364 1 0 genus no rank 0 1 364 2615019 species 1 0 Olleya sp. Bg11-27 2058135 364 1059 143222 1 0 genus no rank 0 1 1059 2633436 1059 1729720 1 0 Salegentibacter sp. T436 species 1 1 genus 5 Gramella 0 292691 4378 1913577 930 1 0 Gramella sp. LPB0144 species 0 Gramella sp. SH35 1 2126553 1402 species species 1 0 Gramella forsetii 411153 1050 species 0 Gramella flava 1 995 1486245 genus 0 1 216431 358 1 Croceibacter atlanticus 0 358 313588 species 81 1 genus 15 Capnocytophaga 0 1016 20908 no rank 0 6 2640652 8261 1 Capnocytophaga sp. oral taxon 878 0 1316596 2717 species 1 0 Capnocytophaga sp. H4358 501 1945658 species species 0 Capnocytophaga sp. oral taxon 864 1 1316593 1586 209053 1344 0 Capnocytophaga sp. ChDC OS43 1 species 758 1945657 1 0 Capnocytophaga sp. H2931 species 1 0 Capnocytophaga sp. oral taxon 323 1705617 1355 species 28189 1283 1 Capnocytophaga cynodegmi 0 species species 0 Capnocytophaga ochracea 1 1529 1018 species Capnocytophaga haemolytica 0 1 45243 1312 1 0 Capnocytophaga gingivalis 624 1017 species species Capnocytophaga stomatis 0 1 1848904 1319 1826 28188 1 0 Capnocytophaga canimorsus species 327575 2423 1 0 Capnocytophaga leadbetteri species species 1 0 Capnocytophaga sputigena 1019 2250 genus 1176327 532 0 1 532 2636237 0 1 no rank species Aureitalea sp. RR4-38 0 1 2094025 532 1 0 629 2700084 genus species 1850246 629 0 Lutibacter sp. LPB0138 1 61432 1392 0 2 no rank species 1150389 735 1 Flavobacteriaceae bacterium UJ101 0 531844 657 0 Flavobacteriaceae bacterium 3519-10 1 species 3 1 genus 4 Cellulophaga 0 104264 2379 76594 1073 Cellulophaga baltica 0 1 species species 1 0 Cellulophaga algicola 676 59600 1 0 Cellulophaga lytica 979 627 species 3969 52959 0 Polaribacter 6 genus 1 9 species Polaribacter reichenbachii 0 1 996801 727 196858 2380 0 3 no rank Polaribacter sp. MED152 0 1 501 313598 species species 905 2058137 Polaribacter sp. ALD11 0 1 1 0 Polaribacter sp. BM10 1529069 974 species species 853 1774273 Polaribacter vadi 0 1 1 3 Nonlabens 0 5 1611 363408 genus species 328515 380 1 Nonlabens dokdonensis 0 0 2 2615035 816 no rank 1476901 288 0 Nonlabens sp. MIC269 1 species species 2058134 528 Nonlabens sp. MB-3u-79 0 1 species 1 Nonlabens sediminis 0 319236 412 9 0 Flavobacterium 11454 237 genus 1 16 species Flavobacterium indicum 0 1 546 312277 species 1 0 Flavobacterium gilvum 1492737 1969 Flavobacterium columnare 0 1 1285 996 species 0 Flavobacterium commune 1 2121 1306519 species Flavobacterium johnsoniae 0 1 986 3640 species 612 1763534 1 0 Flavobacterium crassostreae species Flavobacterium psychrophilum 0 1 96345 599 species 55197 666 1 Flavobacterium branchiophilum 0 species genus 3186 104267 4 0 species Tenacibaculum jejuense 0 1 1377 584609 0 Tenacibaculum dicentrarchi 1 669041 664 species 1 Tenacibaculum todarodis 0 1850252 729 species species 416 107401 0 Tenacibaculum maritimum 1 1843 417127 1 0 genus species 1 0 Zunongwangia profunda 1843 398743 1 0 415 83612 genus 1 Psychroflexus torquis 0 415 57029 species 389486 304 1 0 genus 1 0 304 2648869 no rank species 1453352 304 Sediminicola sp. YIK13 0 1 genus 0 1 754 1204360 0 Siansivirga zeaxanthinifaciens 1 754 762954 species 1 0 1209327 822 genus species 0 Flavivirga eckloniae 1 1803846 822 88 1 genus 3030 76831 0 Myroides 5 species 1 0 Myroides odoratimimus 915 76832 0 Myroides profundi 1 669 480520 species 2 0 2642485 1358 no rank species Myroides sp. A21 0 1 1583100 571 1 Myroides sp. ZB35 0 1458492 787 species genus 4 0 Dokdonia 326319 1044 24 1 2615033 828 0 2 no rank species 1 Dokdonia sp. MED134 0 313590 311 species 983548 517 1 0 Dokdonia sp. 4H-3-7-5 192 326320 1 Dokdonia donghaensis 0 species genus 0 Formosa 3 564 225842 1 1 2 0 563 2644710 no rank 1 Formosa sp. Hel3_A1_48 0 1336795 293 species 1 Formosa sp. Hel1_33_131 0 1336794 270 species 1 1 Lacinutrix 0 4 1825 291183 genus Lacinutrix venerupis 0 1 781 1486034 species 0 2 1043 2647285 no rank species Lacinutrix sp. 5H-3-7-4 0 1 983544 452 species Lacinutrix sp. Bg11-31 0 1 591 2057808 1 1 genus 743 358023 2 0 Lutibacter species 742 1622118 1 0 Lutibacter profundi 1 1 genus 2 Robiginitalea 0 811 252306 species 1 0 Robiginitalea biformata 252307 810 genus 1 0 793 178469 species Arenibacter algicola 0 1 793 616991 918 393005 0 1 genus Tamlana sp. UJ94 0 1 918 2069432 species genus 1518147 890 1 0 species 890 1790137 1 Wenyingzhuangia fucanilytica 0 2 0 1245 286104 genus no rank 1245 2615021 2 0 515 1936080 Winogradskyella sp. J14-2 0 1 species 754409 730 1 0 Winogradskyella sp. PG-2 species genus 5 0 Maribacter 3702 252356 4 1 2615042 2950 0 3 no rank species 964 1836467 0 Maribacter sp. T28 1 313603 959 1 Maribacter sp. HTCC2170 0 species species 1027 1644130 Maribacter sp. 1_2014MBL_MicDiv 0 1 1 Maribacter cobaltidurans 0 1178778 748 species 1 1 genus Aequorivita 0 2 667 153265 Aequorivita sublithincola 0 1 101385 666 species 0 Muricauda 3 111500 1668 genus 1 10 902 516051 1 0 Muricauda lutaonensis species species 0 Muricauda ruestringensis 1 756 111501 1649495 692 2 Seonamhaeicola 0 genus 1 1 no rank 0 1 691 2622645 species 1 Seonamhaeicola sp. S2-3 0 1936081 691 130 313602 0 2 no rank 1940138 49 0 1 genus 49 1415657 0 Candidatus Walczuchella monophlebidarum 1 species genus 1 0 81 336809 336810 81 1 Candidatus Sulcia muelleri 0 species 22 0 38467 2762318 family 206 1 genus 0 Elizabethkingia 6 10185 308865 species 1 0 Elizabethkingia meningoseptica 1567 238 species 1174 1756149 1 Elizabethkingia genomosp. 3 0 species 1997 172045 Elizabethkingia miricola 0 1 species 1756150 1241 1 0 Elizabethkingia genomosp. 4 1 0 Elizabethkingia anophelis 4000 1117645 species no rank 0 10 2782232 13636 genus 59732 12150 Chryseobacterium 0 9 92 1 species 0 Chryseobacterium glaciei 1 1665 1685010 1 Chryseobacterium gallinarum 0 1386 1324352 species no rank 3 0 3481 2593645 species 0 Chryseobacterium sp. StRB126 1 1245 878220 species 1191 2015076 0 Chryseobacterium sp. T16E-39 1 1721091 1045 Chryseobacterium sp. IHB B 17019 0 1 species species 0 Chryseobacterium indologenes 1 253 2388 species 1 Chryseobacterium piperi 0 558152 1498 1265445 1640 0 Chryseobacterium camelliae 1 species 1486 2782228 0 1 genus 536441 1486 1 Chryseobacterium taklimakanense 0 species genus 2 0 Ornithobacterium 11869 28250 10 1 species 28251 11859 0 Ornithobacterium rhinotracheale 1 347 1013 0 Weeksella 2 genus 1 1 species 1 Weeksella virosa 0 1014 346 genus Riemerella 0 2 2430 34084 2 1 Riemerella anatipestifer 0 1 2428 34085 species 1937959 1974 0 4 class 1 2 4 0 Saprospirales 1974 1936988 order 1467 1937961 2 0 family genus 2349 1467 2 0 Haliscomenobacter 1 1 species 2350 1466 1 Haliscomenobacter hydrossis 0 family 505 89374 1 0 1 0 505 1007 genus species 1 Saprospira grandis 0 505 1008 61 1 order 1100069 3006 6 0 Bacteroidetes Order II. Incertae sedis family 5 Rhodothermaceae 0 563843 2945 11 1 no rank 1 0 1196022 1088 Rhodothermaceae bacterium RA 0 1 1088 1779382 species 1 0 146918 447 genus species 1 0 Salinibacter ruber 447 146919 genus 2 0 Rhodothermus 1399 29548 7 1 1392 29549 0 Rhodothermus marinus 1 species 1 65 0 Bacteroidia 71 4870947 200643 class Bacteroidales 0 60 171549 4863639 order 1 540 7385 2005523 Paludibacteraceae 0 3 family 1 1 genus 7384 346096 0 Paludibacter 2 4 1 185300 7380 Paludibacter propionicigenes 0 1 species family 0 2 1853231 116523 genus 283168 116523 Odoribacter 0 2 1 1 species 0 Odoribacter splanchnicus 1 116522 28118 family 11 Bacteroidaceae 0 2162197 815 26 1 2162171 816 Bacteroides 0 10 genus 1 66998 species 86201 290053 Bacteroides helcogenes 0 1 1 0 Bacteroides zoogleoformans 28119 63082 species species Bacteroides cellulosilyticus 0 1 246787 144635 1 Bacteroides caecimuris 0 263581 1796613 species 591423 817 0 Bacteroides fragilis 1 species Bacteroides thetaiotaomicron 0 1 271264 818 species 0 Bacteroides heparinolyticus 1 28113 76113 species 28116 476187 0 Bacteroides ovatus 1 species species Bacteroides caccae 0 1 47678 122687 no rank 333046 1547696 5 0 1 4 0 Candidatus Azobacteroides 2 511434 1425 genus Candidatus Azobacteroides pseudotrichonymphae 0 1 511435 1421 species 0 3 1546271 909656 genus 198440 376805 1 Bacteroides salanitronis 0 species 1 Bacteroides vulgatus 0 821 1016779 species species 357276 331052 Bacteroides dorei 0 1 1 18 11 0 Prevotellaceae 171552 190592 family 10 Prevotella 0 838 190574 genus 1 126 no rank 2638335 4083 0 1 4083 652716 0 Prevotella sp. oral taxon 299 1 species Prevotella jejuni 0 1 7053 1177574 species species 1 0 Prevotella dentalis 6990 52227 0 Prevotella intermedia 1 28131 131029 species species 9026 28129 1 Prevotella denticola 0 species Prevotella fusca 0 1 8801 589436 0 Prevotella enoeca 1 4461 76123 species 1 Prevotella melaninogenica 0 28132 6851 species species 839 12154 1 Prevotella ruminicola 0 2005519 133205 Barnesiellaceae 0 3 family 1 7 1 21 0 Barnesiella 2 133198 397864 genus species 133177 397865 1 Barnesiella viscericola 0 4 1 family 2005520 17405 7 Dysgonamonadaceae 0 1 3 5985 307628 2 0 Petrimonas genus species Petrimonas mucosa 0 1 5982 1642646 1 12 2 0 Proteiniphilum 6708 294702 genus species 6696 1642647 Proteiniphilum saccharofermentans 0 1 1784836 4708 2 0 Fermentimonas genus 1 1 species Fermentimonas caenicola 0 1 4707 1562970 29 1 family Tannerellaceae 0 7 500228 2005525 20 1 genus Tannerella 0 3 17072 195950 28112 10647 1 Tannerella forsythia 0 species no rank 1 0 2620507 6405 Tannerella sp. oral taxon HOT-286 0 1 712710 6405 species 3 0 Parabacteroides 375288 483127 genus 1 66 no rank 2649774 325217 1 0 species 2025876 325217 Parabacteroides sp. CT06 0 1 species 0 Parabacteroides distasonis 1 823 157844 family 176027 171550 0 Rikenellaceae 5 14 1 1 1 genus 2 Mucinivorans 0 1717 1611681 species Mucinivorans hirudinis 0 1 1716 1433126 9 1 genus 2 0 Alistipes 239759 174296 214856 174287 Alistipes finegoldii 0 1 species 1 0 1493 185291 no rank 1493 1400053 0 Bacteroidales bacterium CF 1 species 10 1 family 4 Porphyromonadaceae 0 171551 10348 24 1 genus 10338 836 3 Porphyromonas 0 species 0 Porphyromonas gingivalis 1 8803 837 species 1 0 Porphyromonas asaccharolytica 28123 1511 0 Marinilabiliales 10 7243 1970189 order 1 9 1 1 family 632 1970190 0 Salinivirgaceae 2 631 1970191 1 0 genus species 1 Salinivirga cyanobacteriivorans 0 1307839 631 Prolixibacteraceae 0 3 1471398 3087 family 1 2 genus 1471399 3085 2 0 Draconibacterium 4 1 1168034 3081 0 Draconibacterium orientale 1 species 1 8 Marinilabiliaceae 0 3 1923 558415 family 2 1 genus 0 Alkalitalea 2 1915 1193324 species 1 0 Alkalitalea saponilacus 1913 889453 1592 1573805 0 1 family 2060722 1592 0 1 genus species 1 0 Marinifilaceae bacterium SPP2 1717717 1592 15 1 class 24 Sphingobacteriia 0 117747 26045 20 1 order 200666 26030 23 Sphingobacteriales 0 family 0 Sphingobacteriaceae 22 26010 84566 17 1 4 Mucilaginibacter 0 3998 423349 genus 1 31 species Mucilaginibacter sp. BJC16-A31 0 1 939 1234841 species 0 Mucilaginibacter gotjawali 1 1550579 1661 no rank 1 0 2617802 1367 1300914 1367 Mucilaginibacter sp. PAMC 26640 0 1 species 1 19 Pedobacter 0 6 84567 9132 genus 0 1 2628915 1525 no rank 1525 1727164 Pedobacter sp. PACM 27299 0 1 species 2312 984 0 Pedobacter heparinus 1 species species 188932 1986 1 Pedobacter cryoconitis 0 species Pedobacter ginsengisoli 0 1 363852 1263 species 1 Pedobacter steynii 0 2027 430522 7 1 genus 6 0 Sphingobacterium 7527 28453 4 0 6025 2609468 no rank 743722 1367 Sphingobacterium sp. 21 0 1 species species 1 0 Sphingobacterium sp. B29 1933220 1739 1 0 Sphingobacterium sp. G1-14 1669 2003121 species 1250 1538644 1 Sphingobacterium sp. ML3W 0 species 1495 1010 Sphingobacterium mizutaii 0 1 species 2 1 genus 1805 929509 2 0 Solitalea 995 1803 1 Solitalea canadensis 0 species 0 1 1736 84568 no rank species 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1986952 1736 genus 0 Pseudopedobacter 2 1795 1649482 10 1 0 Pseudopedobacter saltans 1 1785 151895 species 0 14 1853228 13215 class 1 13 1853229 13215 14 Chitinophagales 0 order 1 33 13202 563835 13 Chitinophagaceae 0 family 1 0 903 398041 genus 1492898 903 1 Flavisolibacter tropicus 0 species 1 1 genus 1196 1769012 Arachidicoccus 0 2 1195 2636138 1 0 no rank species 1850526 1195 1 0 Arachidicoccus sp. BS20 genus 1 0 1771 354354 species Niastella koreensis 0 1 1771 354356 genus Filimonas 0 2 649460 2461 2 1 species 1 Filimonas lacunae 0 2459 477680 3 1 genus 379899 2503 0 Niabella 3 species 1 0 Niabella ginsenosidivorans 1176587 1009 species 446683 1491 1 Niabella soli 0 1 3 3 Chitinophaga 0 4335 79328 genus 0 Chitinophaga pinensis 1 79329 2975 species species 1 Chitinophagaceae bacterium 13 0 2029983 1357 43 1 class 52 Cytophagia 0 43779 768503 1 227 768507 43736 51 Cytophagales 0 order 16 0 Hymenobacteraceae 1853232 18798 family 1 73 1 162 0 Hymenobacter 8 89966 10802 genus 1 Hymenobacter sedentarius 0 1411621 1298 species 1 Hymenobacter swuensis 0 1446467 1221 species 2615202 8121 5 0 no rank species 1 Hymenobacter sp. DG25B 0 1385664 1670 species Hymenobacter sp. PAMC 26554 0 1 1484116 1354 species 1385663 1130 0 Hymenobacter sp. DG25A 1 species 0 Hymenobacter sp. PAMC 26628 1 1855 1484118 species 1356852 2112 Hymenobacter sp. APR13 0 1 genus 3926 1379908 Rufibacter 0 4 8 1 no rank 2 0 2319 2639626 species 1379910 1012 0 Rufibacter sp. DG31D 1 species 1307 1379909 0 Rufibacter sp. DG15C 1 512763 1599 1 Rufibacter tibetensis 0 species 9 1 genus 3 Pontibacter 0 3997 323449 1364 388950 1 Pontibacter akesuensis 0 species Pontibacter korlensis 0 1 2624 400092 species 3027 1853234 0 2 family 4 1 genus 59740 3027 0 Persicobacter 2 no rank 2664020 3023 0 1 1 Persicobacter sp. JZB09 0 1085624 3023 species 0 2 2762301 1120 family 4 1 genus 869806 1120 0 Marivirga 2 1006 1116 Marivirga tractuosa 0 1 species Cytophagaceae 0 15 11597 89373 family 1 9 1 1 2 0 Leadbetterella 903 319458 genus species Leadbetterella byssophila 0 1 316068 902 0 1 736 861914 genus 2620963 736 1 0 no rank species 1834519 736 0 Fibrella sp. ES10-3-2-2 1 1279 978 Cytophaga 0 2 genus 1 6 1 Cytophaga hutchinsonii 0 985 1273 species genus Runella 0 2 105 1260 1 1 species 1 0 Runella slithyformis 106 1259 120831 1764 1 0 genus 0 Dyadobacter fermentans 1 94254 1764 species 10 1 genus 107 5646 6 0 Spirosoma 1 Spirosoma aerolatum 0 1133 1211326 species 1 Spirosoma rigui 0 992 564064 species species 0 Spirosoma montaniterrae 1 1405 1178516 Spirosoma sp. HA7 0 1 2057025 1070 species species Spirosoma radiotolerans 0 1 1036 1379870 0 Cyclobacteriaceae 7 4605 563798 family 1 4 genus 0 1 232244 811 Belliella baltica 0 1 811 232259 species 2 0 Echinicola 390846 1534 genus 1 1 species 390884 1533 1 Echinicola vietnamensis 0 2 0 68288 1875 genus Cyclobacterium marinum 0 1 912 104 species species 320787 963 1 Cyclobacterium amurskyense 0 genus 381 246875 1 0 0 Algoriphagus sp. M8-2 1 1727163 381 species family 1501348 342 0 4 2 Candidatus Cardinium 0 273135 87 genus 1 1 2641185 86 0 1 no rank 86 249402 1 0 Cardinium endosymbiont of Encarsia pergandiella species 255 281119 2 Candidatus Amoebophilus 0 genus 1 1 species 1 0 Candidatus Amoebophilus asiaticus 254 281120 1 2 3014 200667 0 Flammeovirgaceae 3 family 340671 1253 0 1 no rank species Flammeovirgaceae bacterium 311 0 1 1253 1257021 genus 1759 59739 0 1 2637820 1759 1 0 no rank species 1759 1191459 0 Flammeovirga sp. MY04 1 1937968 1006 1 0 family 1937972 1006 1 0 genus Bernardetia litoralis 0 1 999 1006 species 7133 1090 0 20 phylum 1 16 191410 7133 Chlorobia 0 20 class 25 1 order 19 0 Chlorobiales 7117 191411 1 37 18 Chlorobiaceae 0 191412 7092 family genus 1 0 649 100715 0 Chloroherpeton thalassium 1 649 100716 species 0 8 2942 274493 no rank 1 1 Pelodictyon 0 3 873 1099 genus 1 0 Pelodictyon luteolum 1100 530 species 34090 342 1 0 Pelodictyon phaeoclathratiforme species 5 1 genus 2069 1091 5 Chlorobium 0 species 1 Chlorobium phaeobacteroides 0 1096 628 0 Chlorobium chlorochromatii 1 337090 546 species species 1094 507 1 0 Chlorobium phaeovibrioides 1092 383 1 Chlorobium limicola 0 species 1715 256319 4 0 Chlorobaculum genus 1 8 1097 416 0 Chlorobaculum tepidum 1 species 1 Chlorobaculum parvum 0 274539 526 species species 765 274537 Chlorobaculum limnaeum 0 1 0 4 1101 1749 genus 391 1102 Prosthecochloris aestuarii 0 1 species no rank 2632826 1358 0 3 247 1868325 Prosthecochloris sp. CIB 2401 0 1 species species 1 0 Prosthecochloris sp. GSB1 281093 451 0 Prosthecochloris sp. HL-130-GSB 1 1974213 660 species phylum 456828 415 0 1 genus 1 0 456826 415 415 456827 1 0 Candidatus Cloacimonas acidaminovorans species phylum 8 0 1456 142182 1 2 8 Gemmatimonadetes 0 1456 219685 class 24 1 order 7 Gemmatimonadales 0 219686 1454 18 1 family Gemmatimonadaceae 0 6 1430 219687 3 0 Gemmatimonas 797 173479 genus 1 5 species 1 Gemmatimonas phototrophica 0 402 1379270 species 173480 390 1 Gemmatimonas aurantiaca 0 4 1 genus 615 1706036 0 Gemmatirosa 2 species 611 861299 Gemmatirosa kalamazoonesis 0 1 phylum 3 0 65842 843 class 0 3 843 204430 order 3 Fibrobacterales 0 218872 843 6 1 204431 837 0 Fibrobacteraceae 2 family 1 2 genus 832 835 0 1 835 833 0 Fibrobacter succinogenes 1 species clade 4807737 1783272 1655 0 6597 200795 41 Chloroflexi 0 phylum 1 8 475962 502 0 Caldilineae 4 class 1 3 3 Caldilineales 0 499 475963 order 1 4 family 495 475964 2 0 1 18 2 0 Caldilinea 233191 495 genus 477 133453 Caldilinea aerophila 0 1 species 2 1 class 292625 1262 6 Anaerolineae 0 3 1 order 0 Anaerolineales 5 292629 1260 family 1257 292628 4 0 Anaerolineaceae 2 1 genus 1 0 472 233189 472 167964 1 0 Anaerolinea thermophila species no rank 0 1 569 1324991 species 1 0 Anaerolineaceae bacterium oral taxon 439 1889813 569 214 2019482 0 1 genus 1 0 Brevefilum fermentans 214 1986204 species 7 1 class 570 189775 0 Thermomicrobia 8 85000 374 0 4 subclass 85001 374 0 Sphaerobacterales 4 order 1 6 suborder 3 0 255728 368 family 3 Sphaerobacteraceae 0 85002 368 4 1 genus 2 0 Sphaerobacter 364 2056 23 1 1 0 Sphaerobacter thermophilus 2057 341 species order 189776 189 0 3 189 189777 3 0 Thermomicrobiaceae family 1 1 1 1 188 499 0 Thermomicrobium 2 genus species 187 500 1 0 Thermomicrobium roseum class 1631 32061 11 0 Chloroflexia 5 1 10 0 Chloroflexales 1626 32064 order 1 8 suborder 5 0 892 1508594 1 1 Chloroflexaceae 0 5 1106 892 family 34 1 genus 0 Chloroflexus 4 891 1107 267 1 species 2 Chloroflexus aurantiacus 0 1108 532 strain 1 Chloroflexus sp. Y-400-fl 0 480224 265 325 152260 Chloroflexus aggregans 0 1 species 1508595 726 4 0 suborder 5 1 family 726 1508635 4 0 Roseiflexaceae genus 3 Roseiflexus 0 721 120961 7 1 371 2609473 1 0 no rank 1 0 Roseiflexus sp. RS-1 357808 371 species 120962 343 1 0 Roseiflexus castenholzii species 1721 301297 Dehalococcoidia 0 6 class 1 1 521 670486 0 2 genus 1 Dehalogenimonas formicexedens 0 1839801 286 species 552810 235 0 Dehalogenimonas lykanthroporepellens 1 species order 1199 1202465 0 3 2 1 family 1202464 1199 Dehalococcoidaceae 0 3 genus 2 0 61434 1197 species Dehalococcoides mccartyi 0 1 61435 1011 237581 186 1 0 no rank 0 Dehalococcoides sp. UCH007 1 1522671 186 species 5 0 Ardenticatenia 1382928 903 class 1 40 58 1 order 863 1382929 0 Ardenticatenales 4 family Ardenticatenaceae 0 3 1382930 805 1 1 2 Candidatus Promineofilum 0 804 1988031 genus 1 14 1 0 Candidatus Promineofilum breve 790 1806508 species 1 101 0 Firmicutes 703 4373408 1239 phylum no rank 33974 594 0 2 0 Ndongobacter 2 1930845 594 genus 1 3 1871025 591 0 Ndongobacter massiliensis 1 species 23 1 class 31 Negativicutes 0 909932 250330 order 14 0 Selenomonadales 909929 198841 73 1 4 0 Sporomusaceae 4904 1843490 family 1 3 genus 3 Pelosinus 0 365348 4901 10 1 no rank 1 0 2362 2629460 2362 484770 1 Pelosinus sp. UFO1 0 species species 365349 2529 0 Pelosinus fermentans 1 1 92 9 0 Selenomonadaceae 193864 1843491 family 39 1 genus Selenomonas 0 6 7667 970 species 0 Selenomonas ruminantium 1 2619 971 0 Selenomonas sputigena 1 1551 69823 species 3 0 3458 2637378 no rank species 1 0 Selenomonas sp. oral taxon 478 712538 1087 species 1362 713030 1 0 Selenomonas sp. oral taxon 136 species 1 Selenomonas sp. oral taxon 920 0 1009 1884263 1 4 Megamonas 0 2 186105 158846 genus species Megamonas hypermegale 0 1 158847 186101 45096 1843489 11 0 Veillonellales order 1 239 896 1 family 31977 44857 0 Veillonellaceae 10 1 2 0 Negativicoccus 2 909928 792 genus species 1702287 790 Negativicoccus massiliensis 0 1 2 Megasphaera 0 7072 906 genus 1 159 species 907 6913 1 0 Megasphaera elsdenii 6 1 genus Dialister 0 2 1786 39948 1780 39950 Dialister pneumosintes 0 1 species 1 5 0 Veillonella 3 34311 29465 genus 1 0 Veillonella parvula 31394 29466 species species 2912 248315 Veillonella rodentium 0 1 5 1 order Acidaminococcales 0 5 6370 1843488 13 1 family 4 0 Acidaminococcaceae 909930 6365 3 Acidaminococcus 0 904 6352 genus 1 10 2328 905 Acidaminococcus fermentans 0 1 species Acidaminococcus intestini 0 1 187327 4014 species 1 162 422 0 Bacilli 365094 91061 class 261 Bacillales 0 201964 1385 order 1 376 1 250 186817 97395 115 Bacillaceae 0 family 0 2 45667 1253 genus 1 0 Halobacillus halophilus 1570 673 species 402384 580 Halobacillus mangrovi 0 1 species 2 1 genus 1329200 1762 0 Fictibacillus 3 species Fictibacillus arsenicus 0 1 255247 949 species 811 1221500 0 Fictibacillus phosphorivorans 1 2057 2675229 0 2 genus species 0 Bacillus muralis 1 264697 522 1478 1535 1 0 Bacillus simplex species genus 351195 295 1 0 species Salimicrobium jeotgali 0 1 295 1230341 genus 1 0 722 29331 species 722 1449 0 Amphibacillus xylanus 1 1 1928 63686 1386 58 0 Bacillus genus 753 1178537 0 Bacillus xiamenensis 1 species 135735 1366 1 Bacillus endophyticus 0 species species 1 Bacillus megaterium 0 1404 2436 Bacillus gibsonii 0 1 79881 196 species 1664069 917 0 Bacillus glycinifermentans 1 species 0 Bacillus flexus 1 86664 2096 species species 1413 598 1 Bacillus cellulosilyticus 0 species 0 Bacillus pumilus 1 2752 1408 species 1 Bacillus safensis 0 561879 1377 species 1479 512 1 0 Bacillus smithii Bacillus horikoshii 0 1 729 79883 species 1 0 Bacillus weihaiensis 773 1547283 species species group 585 1792192 0 1 species Bacillus altitudinis 0 1 293387 585 0 Bacillus methanolicus 1 849 1471 species species group 0 9 653685 10833 1 Bacillus licheniformis 0 968 1402 species 1648923 813 1 0 Bacillus paralicheniformis species species 1 Bacillus vallismortis 0 72361 113 species 119858 709 Bacillus sonorensis 0 1 species 1452 1125 1 Bacillus atrophaeus 0 species 1 0 Bacillus subtilis 4011 1423 3094 1938374 3 0 species subgroup species 1 Bacillus siamensis 0 659243 462 species 0 Bacillus amyloliquefaciens 1 1390 1339 species Bacillus velezensis 0 1 1293 492670 species 709 33932 Bacillus cohnii 0 1 9711 185979 0 19 no rank 484 98228 Bacillus sp. OxB-1 0 1 species 370 1941347 0 Bacillus sp. 275 1 species species 114 2049935 1 Bacillus sp. Lzh-5 0 411 563169 0 Bacillus sp. SJ-10 1 species species Bacillus sp. 1s-1 0 1 2026248 634 1 0 Bacillus sp. WP8 946 756828 species 1204 1827146 Bacillus sp. IHB B 7164 0 1 species species 1 0 Bacillus sp. (in: Bacteria) 223 1409 1 Bacillus sp. FJAT-14266 0 1837130 581 species 1159 1565991 1 0 Bacillus sp. X1(2014) species 993 666686 0 Bacillus sp. 1NLA3E 1 species 153 1574141 0 Bacillus sp. YP1 1 species species 1446792 390 0 Bacillus sp. Pc3 1 0 Bacillus sp. H15-1 1 634 1856406 species Bacillus sp. BH072 0 1 1570330 150 species 242 1127744 1 Bacillus sp. JS 0 species 2009331 298 1 0 Bacillus sp. MD-5 species species 0 Bacillus sp. LM 4-2 1 1628753 212 species 0 Bacillus sp. SDLI1 1 1774743 513 species 1 0 Bacillus beveridgei 632773 716 species 0 Bacillus coagulans 1 1398 1693 species Bacillus infantis 0 1 324767 905 species group 0 10 86661 20417 species 694 658666 1 Bacillus bombysepticus 0 Bacillus cytotoxicus 0 1 725 580165 species 1396 6333 1 Bacillus cereus 0 species species 0 Bacillus mycoides 1 1405 2511 155322 1111 0 Bacillus toyonensis 1 species species 1 Bacillus anthracis 0 1392 515 no rank 2750818 2396 0 3 species 735 2053832 1 Bacillus sp. HBCD-sjtu 0 species 1 Bacillus sp. ABP14 0 480 1892404 species 1839798 1181 1 Bacillus sp. FDAARGOS_235 0 Bacillus thuringiensis 0 1 6132 1428 species species 835 412384 1 Bacillus aryabhattai 0 1 278 5304 129337 Geobacillus 0 15 genus 0 6 1880 2642459 no rank species 182 1233873 1 Geobacillus sp. GHH01 0 species 1 0 Geobacillus sp. Y4.1MC1 581103 651 species 149 544556 0 Geobacillus sp. Y412MC61 1 129 550542 Geobacillus sp. Y412MC52 0 1 species species 471223 522 0 Geobacillus sp. WCH70 1 Geobacillus sp. C56-T3 0 1 247 691437 species species 1 Geobacillus thermodenitrificans 0 673 33940 Geobacillus subterraneus 0 1 129338 317 species 1422 447 0 Geobacillus stearothermophilus 1 species species group 0 4 1505648 1417 species 332 33938 Geobacillus thermocatenulatus 0 1 0 Geobacillus thermoleovorans 1 33941 642 species species 169283 299 0 Geobacillus lituanicus 1 Geobacillus kaustophilus 0 1 144 1462 species species 1921421 292 1 0 Geobacillus genomosp. 3 0 Virgibacillus 7 4605 84406 genus 1 19 2 0 2620237 1724 no rank Virgibacillus sp. 6R 0 1 1053 1911587 species species 403957 671 Virgibacillus sp. SK37 0 1 species 525 1473 1 0 Virgibacillus pantothenticus 1482 933 1 Virgibacillus halodenitrificans 0 species species 1 Virgibacillus necropolis 0 163877 918 species 486 2017483 1 0 Virgibacillus phasianinus genus 1127 182709 1 0 species 1127 182710 0 Oceanobacillus iheyensis 1 genus 2 0 Parageobacillus 1906945 718 1 1 species 0 Parageobacillus thermoglucosidasius 1 1426 717 150247 3378 0 Anoxybacillus 6 genus 1 9 1262 33934 0 Anoxybacillus flavithermus 1 species 0 2 997 2639704 no rank 0 Anoxybacillus sp. B7M1 1 1490057 445 species species 1 0 Anoxybacillus sp. B2M1 1490052 552 Anoxybacillus gonensis 0 1 417 198467 species 1 Anoxybacillus amylolyticus 0 693 294699 species 2 0 1823 2675230 genus species 0 Bacillus oceanisediminis 1 1134 665099 859143 689 Bacillus kochii 0 1 species genus Lysinibacillus 0 5 400634 4385 12 1 no rank 746 2636778 0 1 2072025 746 Lysinibacillus sp. YS11 0 1 species species 0 Lysinibacillus varians 1 895 1145276 species 1421 2162 1 0 Lysinibacillus sphaericus species 28031 570 1 0 Lysinibacillus fusiformis genus 175304 538 0 1 species 1 Lentibacillus amyloliquefaciens 0 538 1472767 549 459532 0 1 genus species Terribacillus aidingensis 0 1 549 586416 genus 1055323 803 2 0 Aeribacillus 1 1 species Aeribacillus pallidus 0 1 802 33936 genus 4140 2675234 0 5 species 779 79885 0 Bacillus pseudofirmus 1 752 86665 Bacillus halodurans 0 1 species species 1 0 Bacillus krulwichiae 694 199441 species 300825 609 Bacillus lehensis 0 1 79880 1306 Bacillus clausii 0 1 species 1 45 186818 13778 0 Planococcaceae 27 family 3 Solibacillus 0 2187 648800 genus 1 9 76853 1511 1 Solibacillus silvestris 0 species 1 0 2637870 667 no rank 0 Solibacillus sp. R5-41 1 2048654 667 species 44 1 genus 12 0 Planococcus 5290 1372 no rank 0 2 2662419 738 1526927 321 1 Planococcus sp. PAMC 21323 0 species 2058136 417 1 Planococcus sp. MB-3u-03 0 species 1 Planococcus rifietoensis 0 579 200991 species Planococcus maritimus 0 1 192421 1014 species species 518 1038856 1 Planococcus plakortidis 0 species Planococcus kocurii 0 1 425 1374 1 Planococcus sp. L10.15 0 1302659 469 species species 1 Planococcus donghaensis 0 414778 498 1598147 297 0 Planococcus faecalis 1 species 332 161360 1 0 Planococcus antarcticus species species 1 Planococcus halocryophilus 0 376 1215089 1 1 0 Kurthia 2 1649 1124 genus no rank 1123 2644826 1 0 species 1 Kurthia sp. 11kri321 0 1123 1750719 1 1 157226 1003 2 0 Jeotgalibacillus genus 1002 1508404 1 0 Jeotgalibacillus malaysiensis species genus Rummeliibacillus 0 2 648802 887 2 1 species 885 241244 0 Rummeliibacillus stabekisii 1 genus 3242 1569 5 Sporosarcina 0 26 1 species 635 1476 1 0 Sporosarcina psychrophila 2647733 952 2 0 no rank species 521 1930764 0 Sporosarcina sp. P33 1 1 Sporosarcina sp. P37 0 1930546 431 species species 0 Sporosarcina ureae 1 1629 1571 family 90964 27800 Staphylococcaceae 0 41 999 1 1 572 33 0 Staphylococcus 23900 1279 genus no rank 629 91994 0 1 species 1 0 Staphylococcus sp. AntiMn-1 629 1715860 species 1 Staphylococcus condimenti 0 609 70255 species 509 29382 Staphylococcus cohnii 0 1 0 Staphylococcus carnosus 1 762 1281 species species 0 Staphylococcus schleiferi 1 1295 683 species 766 28035 1 Staphylococcus lugdunensis 0 308354 826 1 Staphylococcus simiae 0 species 985762 425 Staphylococcus agnetis 0 1 species 313 46127 1 0 Staphylococcus felis species 1 0 Staphylococcus kloosii 29384 485 species 0 Staphylococcus saprophyticus 1 541 29385 species species Staphylococcus simulans 0 1 769 1286 species 1288 1206 Staphylococcus xylosus 0 1 Staphylococcus nepalensis 0 1 618 214473 species species 1517 45972 1 0 Staphylococcus pasteuri species 1 Staphylococcus epidermidis 0 1315 1282 species Staphylococcus hyicus 0 1 478 1284 246432 820 1 Staphylococcus equorum 0 species 550 29388 1 0 Staphylococcus capitis species species 1294 528 1 0 Staphylococcus muscae 1280 2992 1 Staphylococcus aureus 0 species species 461 70258 1 0 Staphylococcus piscifermentans species 496 1290 Staphylococcus hominis 0 1 species 641 985002 Staphylococcus argenteus 0 1 155085 252 Staphylococcus lutrae 0 1 species species 1283 586 1 Staphylococcus haemolyticus 0 species 589 61015 Staphylococcus succinus 0 1 species 1 Staphylococcus pettenkoferi 0 170573 358 species Staphylococcus sciuri 0 1 936 1296 species 0 Staphylococcus pseudintermedius 1 496 283734 species Staphylococcus warneri 0 1 1292 488 species 643214 684 1 0 Staphylococcus stepanovicii genus 0 1 2005363 185 species 1849491 185 Auricoccus indicus 0 1 1 1 663 45669 0 Salinicoccus 2 genus species 407035 662 0 Salinicoccus halodurans 1 genus 4 0 Macrococcus 2053 69965 1 1 851 69966 0 Macrococcus caseolyticus 1 species species 1855823 465 1 0 Macrococcus canis no rank 2619255 736 1 0 0 Macrococcus sp. IME1552 1 736 1898474 species no rank 0 9 539002 3393 0 2 539738 625 no rank 1378 625 Gemella 0 2 genus 1 1 2624949 624 0 1 no rank 624 1785995 0 Gemella sp. oral taxon 928 1 species no rank 7 0 2768 539742 1 16 2768 33986 7 0 Exiguobacterium genus 1 Exiguobacterium antarcticum 0 132920 505 species species Exiguobacterium sibiricum 0 1 565 332410 no rank 2644629 1682 4 0 469 1849031 0 Exiguobacterium sp. U13-1 1 species 1 Exiguobacterium sp. AT1b 0 449 360911 species species 1399115 379 1 Exiguobacterium sp. MH3 0 species 385 1224749 1 0 Exiguobacterium sp. ZWU0009 2812 186823 0 Alicyclobacillaceae 9 family 1 11 767 29330 0 Alicyclobacillus 2 genus 1 16 species 1 0 Alicyclobacillus acidocaldarius 751 405212 genus 3 Tumebacillus 0 1415 432330 5 1 1 Tumebacillus avium 0 1903704 986 species species 1214604 424 0 Tumebacillus algifaecis 1 32 1 genus 619 1129704 3 0 Kyrpidia 2055160 269 0 Kyrpidia sp. EA-1 1 species species 1 0 Kyrpidia tusciae 318 33943 1 3 186824 643 4 0 Thermoactinomycetaceae family 0 Laceyella 1 292635 31 genus 15 1 genus Novibacillus 0 2 609 1677050 Novibacillus thermophilus 0 1 1471761 594 species family 186821 605 2 Sporolactobacillaceae 0 1 1 no rank 663587 604 0 1 [Bacillus] selenitireducens 0 1 85683 604 species 8 0 Listeriaceae 7362 186820 family 1 38 571 2755 0 1 genus 2756 571 Brochothrix thermosphacta 0 1 species 1 16 0 Listeria 6 1637 6753 genus species 1642 1243 Listeria innocua 0 1 836 1643 1 0 Listeria welshimeri species 0 Listeria seeligeri 1 743 1640 species species 1639 2774 Listeria monocytogenes 0 1 species 1141 1638 0 Listeria ivanovii 1 family 45 Paenibacillaceae 0 47800 186822 93 1 genus 0 Thermobacillus 2 1202 76632 1 1 377615 1201 1 Thermobacillus composti 0 species no rank 0 2 2078 85151 2078 55079 2 0 genus 1500254 1087 Aneurinibacillus soli 0 1 species no rank 2642329 991 1 0 species 991 1450761 1 Aneurinibacillus sp. XH2 0 36 0 Paenibacillus 40631 44249 genus 1 372 916 1462996 0 Paenibacillus yonginensis 1 species 2044880 1323 1 0 species group species Paenibacillus riograndensis 0 1 483937 1323 no rank 14566 185978 0 13 species 1 0 Paenibacillus sp. lzh-N1 1223 2069255 980 1536770 1 Paenibacillus sp. FSL R5-0345 0 species 1 Paenibacillus sp. JDR-2 0 1079 324057 species species 0 Paenibacillus sp. FSL R5-0912 1 1536771 1431 species 1 Paenibacillus sp. 32O-W 0 1695218 652 species Paenibacillus sp. Y412MC10 0 1 481743 738 species Paenibacillus sp. FSL P4-0081 0 1 1523 1536769 species 1536775 1081 1 0 Paenibacillus sp. FSL H7-0737 species 1 0 Paenibacillus sp. BIHB4019 813 1870819 species 0 Paenibacillus sp. IHBB 10380 1 1566358 611 1536773 1563 0 Paenibacillus sp. FSL R7-0331 1 species 1482 1536774 Paenibacillus sp. FSL H7-0357 0 1 species species 1 Paenibacillus sp. FSL R7-0273 0 1536772 1390 Paenibacillus bovis 0 1 1616788 1523 species species 0 Paenibacillus peoriae 1 594 59893 species 1178515 588 1 0 Paenibacillus swuensis Paenibacillus odorifer 0 1 1160 189426 species species 1317 189425 1 0 Paenibacillus graminis 365617 810 0 Paenibacillus sabinae 1 species species 1 0 Paenibacillus kribbensis 1046 172713 species 1406 2895 0 Paenibacillus polymyxa 1 species 1 Paenibacillus beijingensis 0 1126833 872 species 44251 1568 Paenibacillus durus 0 1 169760 1075 Paenibacillus stellifer 0 1 species species 0 Paenibacillus mucilaginosus 1 61624 1402 Paenibacillus xylanexedens 0 1 800 528191 species 1 Paenibacillus naphthalenovorans 0 162209 882 species species 1 Paenibacillus terrae 0 159743 978 species 1 0 Paenibacillus crassostreae 690 1763538 species 1 Paenibacillus larvae 0 848 1464 species 0 Paenibacillus ihbetae 1 1870820 1067 1 0 Paenibacillus donghaensis 1392 414771 species 160799 1947 Paenibacillus borealis 0 1 species 1 78 Brevibacillus 0 4 55080 3796 genus species 1 Brevibacillus laterosporus 0 1465 1659 1 0 Brevibacillus formosus 830 54913 species species 1 0 Brevibacillus brevis 1393 1229 160 0 Lactobacillales 186826 162968 order 1 2040 17 Leuconostocaceae 0 81850 5251 family 1 19 46254 270 1 0 genus species 270 1247 0 Oenococcus oeni 1 1745 46255 6 Weissella 0 genus 1 7 species 1631871 303 0 Weissella jogaejeotgali 1 759620 241 1 Weissella ceti 0 species 0 Weissella paramesenteroides 1 1249 396 species species 209 165096 Weissella koreensis 0 1 species 1 Weissella cibaria 0 589 137591 genus 9 Leuconostoc 0 1243 3217 1 1 1 0 Leuconostoc lactis 1246 364 species species 677 1245 1 Leuconostoc mesenteroides 0 306 2685106 0 1 no rank species Leuconostoc sp. C2 0 1 979982 306 1 0 Leuconostoc kimchii 406 136609 species species 1 0 Leuconostoc garlicum 175 255248 1 Leuconostoc carnosum 0 1252 511 species species 1244 462 0 Leuconostoc gelidum 1 species Leuconostoc citreum 0 1 33964 315 27481 81852 17 Enterococcaceae 0 family 1 17 24902 1350 Enterococcus 0 12 genus 1 1327 0 3 1313 2608891 no rank species 2060307 394 1 Enterococcus sp. FDAARGOS_375 0 species 2057791 446 0 Enterococcus sp. CR-Ec1 1 1 0 Enterococcus sp. FDAARGOS_163 473 2060306 species 0 Enterococcus wangshanyuanii 1 754 2005703 species species 1354 902 1 Enterococcus hirae 0 species 699 417368 1 Enterococcus thailandicus 0 Enterococcus casseliflavus 0 1 37734 431 species species Enterococcus faecalis 0 1 1351 3622 1 0 Enterococcus durans 53345 995 species species 836 53346 Enterococcus mundtii 0 1 species 1352 14023 1 0 Enterococcus faecium 0 2 2737 1266 genus 555 633807 1 0 Vagococcus penaei species species 519472 711 1 Vagococcus teuberi 0 491 33969 1 0 genus species 33970 491 Melissococcus plutonius 0 1 genus 805 51668 1 0 species 0 Tetragenococcus halophilus 1 51669 805 186827 2501 7 0 family 22 1 genus 7 0 Aerococcus 2501 1375 0 Aerococcus urinaeequi 1 51665 353 species 315 128944 Aerococcus urinaehominis 0 1 species Aerococcus christensenii 0 1 595 87541 species species 1377 412 0 Aerococcus viridans 1 119206 225 1 0 Aerococcus sanguinicola species species 579 1376 1 Aerococcus urinae 0 1 4 186828 4329 10 Carnobacteriaceae 0 family 6 1 genus Carnobacterium 0 5 2747 2787 no rank 1268 257487 2 0 1 0 Carnobacterium sp. CP1 451 1564681 species 1 0 Carnobacterium sp. 17-4 208596 817 species 0 Carnobacterium maltaromaticum 1 698 2751 species species 815 147709 1 0 Carnobacterium inhibens genus 3 0 Jeotgalibaca 1470540 1035 1 1 1 Jeotgalibaca dankookensis 0 708126 511 species no rank 523 2621505 0 1 523 1903686 1 0 Jeotgalibaca sp. PTS2502 species genus 0 1 503 191769 no rank 2632303 503 1 0 species Marinilactibacillus sp. 15R 0 1 503 1911586 1 0 592 263855 no rank species Lactobacillales bacterium 0 1 1993866 592 1 44 0 Lactobacillaceae 58 33958 34430 family 0 3 2742598 2666 genus 1613 800 1 Lactobacillus fermentum 0 species species 1 0 Lactobacillus reuteri 1598 1266 600 97478 Lactobacillus mucosae 0 1 species 0 1 269 2767877 genus species 148814 269 1 Lactobacillus kunkeei 0 0 2 2767881 416 genus species 0 Lactobacillus sanfranciscensis 1 1625 246 53444 170 0 Lactobacillus lindneri 1 species 1554 2767842 0 3 genus species 1 0 Lactobacillus pentosus 348 1589 species 147 60520 1 0 Lactobacillus paraplantarum 0 Lactobacillus plantarum 1 1059 1590 species 2767876 1423 1 0 genus species 1423 1603 1 0 Lactobacillus amylophilus 1 1276 1578 10522 Lactobacillus 0 16 genus species 293 52242 1 0 Lactobacillus gallinarum species 352 267818 1 Lactobacillus kefiranofaciens 0 0 Lactobacillus helveticus 1 1587 792 species species 0 Lactobacillus amylolyticus 1 83683 303 no rank 0 4 1562 2620435 382 1545702 1 0 Lactobacillus sp. wkB8 species Lactobacillus sp. D1501 0 1 222 2108362 species species 555 2099788 0 Lactobacillus sp. CBA3605 1 2099789 403 0 Lactobacillus sp. CBA3606 1 species species 1 0 Lactobacillus gasseri 1041 1596 species Lactobacillus acetotolerans 0 1 1600 218 species 0 Lactobacillus acidophilus 1 1579 486 1 0 Lactobacillus johnsonii 33959 1502 species species 338 109790 1 0 Lactobacillus jensenii species 1 0 Lactobacillus delbrueckii 1042 1584 1317 1604 Lactobacillus amylovorus 0 1 species genus 3475 2767879 6 0 0 Lactobacillus alimentarius 1 1602 737 species species Lactobacillus heilongjiangensis 0 1 1074467 617 species 1612 445 1 Lactobacillus farciminis 0 species Lactobacillus ginsenosidimutans 0 1 1007676 490 species 0 Lactobacillus crustorum 1 538 392416 species 1847728 648 1 Lactobacillus allii 0 3 0 1139 2767886 genus 447 637971 Lactobacillus koreensis 0 1 species species 535 1580 1 0 Lactobacillus brevis 267363 157 0 Lactobacillus zymae 1 species Pediococcus 0 6 2035 1253 genus 1 7 species 1255 532 1 0 Pediococcus pentosaceus 1 0 473 1670797 species group 0 Pediococcus acidilactici 1 1254 473 species species 1 0 Pediococcus damnosus 459 51663 187452 260 1 0 Pediococcus claussenii species Pediococcus inopinatus 0 1 114090 304 species 2 0 940 2767885 genus 535 1599 Lactobacillus sakei 0 1 species 1 0 Lactobacillus curvatus 28038 405 species 2759736 2296 0 3 genus 868 1582 0 Lactobacillus casei 1 species species 1 Lactobacillus rhamnosus 0 47715 855 Lactobacillus paracasei 0 1 1597 573 species genus 3 0 1137 2767893 376 1581 Lactobacillus buchneri 0 1 species species 1138822 315 0 Lactobacillus curieae 1 152331 446 1 Lactobacillus parabuchneri 0 species genus 4863 2767887 0 4 1 0 Lactobacillus salivarius 2196 1624 species 0 Lactobacillus agilis 1 1601 455 species species 310 89059 1 Lactobacillus acidipiscis 0 0 Lactobacillus ruminis 1 1902 1623 species genus 1 0 510 2767890 species 0 Lactobacillus hokkaidonensis 1 510 1193095 genus 0 1 2767892 278 1 0 Lactobacillus paracollinoides 240427 278 species genus 863 2767889 2 0 species 375 1610 0 Lactobacillus coryniformis 1 Lactobacillus backii 0 1 488 375175 species family 86344 1300 49 0 Streptococcaceae 1871 1 genus 0 Lactococcus 5 1357 5168 24 1 species 1 Lactococcus piscium 0 523 1364 species Lactococcus raffinolactis 0 1 1366 538 species 1 0 Lactococcus garvieae 921 1363 3162 1358 Lactococcus lactis 0 1 species genus 1301 79305 Streptococcus 0 43 2661 1 268 82348 1 0 Streptococcus pluranimalium species species 720 1349 1 0 Streptococcus uberis 0 Streptococcus gordonii 1 1697 1302 species 408 1825069 1 Streptococcus marmotae 0 species species 1318 6656 0 Streptococcus parasanguinis 1 1 0 Streptococcus thermophilus 3400 1308 species 9996 1307 1 0 Streptococcus suis species 7 0 6905 2608887 no rank species 1 Streptococcus sp. FDAARGOS_192 0 1839799 1537 1282 1156431 0 Streptococcus sp. I-G2 1 species 1759399 1369 1 0 Streptococcus sp. A12 species 1319 463 Streptococcus sp. 'group B' 0 1 species 1338 1156433 1 Streptococcus sp. I-P16 0 species species 1 0 Streptococcus sp. oral taxon 431 712633 583 species 333 1902136 0 Streptococcus sp. NPS 308 1 species 1 Streptococcus infantarius 0 2473 102684 1 0 Streptococcus pneumoniae 1857 1313 species 1609 119603 2 0 species group species 1093 1336 1 Streptococcus equi 0 1334 516 1 Streptococcus dysgalactiae 0 species 1 0 Streptococcus iniae 886 1346 species 0 Streptococcus salivarius 1 6309 1304 species species 1834 315405 0 Streptococcus gallolyticus 1 Streptococcus equinus 0 1 892 1335 species 1771 1314 Streptococcus pyogenes 0 1 species species Streptococcus parauberis 0 1 1348 795 species 0 Streptococcus mitis 1 1959 28037 1 Streptococcus halotolerans 0 731 1814128 species 1609 1303 1 0 Streptococcus oralis species species Streptococcus merionis 0 1 400065 510 species Streptococcus acidominimus 0 1 1075 1326 Streptococcus pasteurianus 0 1 2187 197614 species species 692 1309 1 0 Streptococcus mutans species 1 0 Streptococcus pseudopneumoniae 749 257758 0 Streptococcus pantholopis 1 472 1811193 species species 150055 1719 0 Streptococcus lutetiensis 1 species 1 Streptococcus sanguinis 0 845 1305 species 739 45634 1 Streptococcus cristatus 0 4103 1311 1 Streptococcus agalactiae 0 species 3 0 671232 9703 species group 1 0 Streptococcus intermedius 1338 934 species species Streptococcus anginosus 0 1 1328 5394 species 76860 3375 Streptococcus constellatus 0 1 species 752 59310 0 Streptococcus macedonicus 1 Streptococcus himalayensis 0 1 323 1888195 species 0 18 1737404 11069 class order Tissierellales 0 16 10596 1737405 215 1 family Peptoniphilaceae 0 12 9311 1570339 2189 1 1 15 543311 994 0 Parvimonas 2 genus 33033 979 1 Parvimonas micra 0 species genus 2 0 Murdochiella 3560 1161127 1 1 1 0 Murdochiella vaginalis 1852373 3559 species genus 0 Finegoldia 2 913 150022 4 1 species 1260 909 Finegoldia magna 0 1 2 1 genus 162289 581 0 Peptoniphilus 2 no rank 579 2637196 1 0 species 579 1912856 Peptoniphilus sp. ING2-D1G 0 1 genus 165779 1074 3 Anaerococcus 0 1 1 1 0 Anaerococcus mediterraneensis 510 1870984 species Anaerococcus prevotii 0 1 33034 563 species 1 1 family 1070 2042895 0 Gottschalkiaceae 3 genus 2 0 Gottschalkia 1505664 1069 2 1 species 1 Gottschalkia acidurici 0 1067 1556 473 1737407 2 0 no rank 1582879 473 0 Ezakiella 2 genus 1 5 Ezakiella massiliensis 0 1 1852374 468 species 3 1 class 1676648 514 5 0 Limnochordia 511 1676649 4 Limnochordales 0 order 1 7 4 1 family 0 Limnochordaceae 3 504 1676650 1 1 500 1676651 Limnochorda 0 2 genus Limnochorda pilosa 0 1 1555112 499 species 1 125 212 0 Clostridia 186801 3733486 class 6390 1 order 3711333 186802 158 Clostridiales 0 0 Peptococcaceae 27 18366 186807 family 1 42 genus 750 2282742 1 0 58138 750 1 0 Desulfotomaculum acetoxidans species 0 1 2282740 867 genus 1 Desulfotomaculum gibsoniae 0 102134 867 species 1562 3024 0 Desulfotomaculum 5 genus 1 10 species 1 Desulfotomaculum reducens 0 59610 847 1564 1015 1 Desulfotomaculum ruminis 0 species species 1565 506 1 0 Desulfotomaculum nigrificans species 646 1833852 0 Desulfotomaculum ferrireducens 1 17 1 genus 56112 4086 Dehalobacter 0 4 no rank 2960 2635733 0 2 species 1131462 1609 0 Dehalobacter sp. CF 1 1351 1147129 Dehalobacter sp. DCA 0 1 species species 0 Dehalobacter restrictus 1 1109 55583 319 471826 0 1 genus 319 471827 1 0 Candidatus Desulforudis audaxviator species genus 2359 79206 Desulfosporosinus 0 4 12 1 885581 933 0 Desulfosporosinus acidiphilus 1 species 671 79209 0 Desulfosporosinus meridiei 1 species 743 1563 1 Desulfosporosinus orientis 0 species 2 Syntrophobotulus 0 51196 843 genus 1 2 species 0 Syntrophobotulus glycolicus 1 841 51197 4179 36853 5 0 Desulfitobacterium genus 1 17 species 0 Desulfitobacterium metallireducens 1 142877 768 1 Desulfitobacterium dehalogenans 0 1156 36854 species species 49338 1481 Desulfitobacterium hafniense 0 1 species 1 Desulfitobacterium dichloroeliminans 0 233055 757 1 0 1395 51514 genus 1395 51515 Dehalobacterium formicoaceticum 0 1 species 4 1 genus 2 0 Thermincola 502 278993 498 863643 1 Thermincola potens 0 species 0 10 59953 538999 no rank 11 1 family 4 Clostridiales Family XIII. Incertae Sedis 0 2737 543314 species [Eubacterium] sulci 0 1 143393 1161 4 1 genus Mogibacterium 0 2 1565 86331 species 1 0 Mogibacterium diversum 1561 114527 genus 1 0 28441 2717089 species 28441 2086584 1 0 Mordavella sp. Marseille-P3756 2 1 family 3 Clostridiales Family XVII. Incertae Sedis 0 879 539000 7 1 genus 2 Thermaerobacter 0 73918 877 0 Thermaerobacter marianensis 1 870 73919 species 1 177 2 0 Intestinimonas 27896 1392389 genus species 1 0 Intestinimonas butyriciproducens 1297617 27719 family 12 Ruminococcaceae 0 935746 541000 122 1 no rank 1 0 552397 1114 1114 29343 0 [Clostridium] cellulosi 1 species 0 1 2305133 2449 no rank species 2449 1572656 0 Ruminococcaceae bacterium CPB6 1 21 1 genus 2 Flavonifractor 0 48516 946234 1 0 Flavonifractor plautii 292800 48495 species 0 Ruminococcus 3 1263 16751 genus 1 23 species 1264 2973 1 0 Ruminococcus albus species 1 Ruminococcus bicirculans 0 13755 1160721 genus 0 Faecalibacterium 2 864103 216851 322 1 853 863781 0 Faecalibacterium prausnitzii 1 species 8 1 genus 2 0 Ethanoligenens 2691 253238 253239 2683 0 Ethanoligenens harbinense 1 species family 93096 31979 41 0 Clostridiaceae 224 1 1 1 1761 114627 3 0 Alkaliphilus genus species 1 0 Alkaliphilus oremlandii 735 461876 208226 1025 0 Alkaliphilus metalliredigens 1 species 0 Geosporobacter 2 390805 2109 genus 1 3 species 1 Geosporobacter ferrireducens 0 1424294 2106 1 222 1485 87699 0 Clostridium 30 genus Clostridium argentinense 0 1 29341 1599 species 0 Clostridium botulinum 1 1491 11796 species species 84022 908 1 Clostridium aceticum 0 species 1 Clostridium pasteurianum 0 1501 3965 species 1 0 Clostridium ljungdahlii 1419 1538 species 394958 1779 1 0 Clostridium taeniosporum species 0 Clostridium beijerinckii 1 5351 1520 species 1614 1494 1 Clostridium cochlearium 0 238834 1706 0 Clostridium estertheticum 1 species 0 Clostridium scatologenes 1 1548 2573 species 36745 3720 0 Clostridium saccharoperbutylacetonicum 1 species no rank 2614128 13923 2 0 species 2121 755731 1 0 Clostridium sp. BNL1100 1042156 11802 1 Clostridium sp. SY8519 0 species species 1 0 Clostridium cellulovorans 2200 1493 1 0 Clostridium chauvoei 1614 46867 species species 84023 1430 0 Clostridium autoethanogenum 1 species 1534 3003 1 Clostridium kluyveri 0 0 Clostridium carboxidivorans 1 217159 2123 species species 169679 2225 Clostridium saccharobutylicum 0 1 1497 1319 1 Clostridium formicaceticum 0 species 1 Clostridium tyrobutyricum 0 1284 1519 species 1513 1997 0 Clostridium tetani 1 species species 1502 7289 1 0 Clostridium perfringens species 1 0 Clostridium sporogenes 1730 1509 species 1561 2896 0 Clostridium baratii 1 1 0 Clostridium acetobutylicum 1279 1488 species species 1 0 Clostridium novyi 1542 1103 1 0 Clostridium bornimense 1216932 1692 species 1492 3940 Clostridium butyricum 0 1 species 1981033 73 1 0 Mordavella genus 49082 1230 4 0 Candidatus Arthromitus genus 1 10 no rank 3 0 1220 2638829 1041504 455 1 Candidatus Arthromitus sp. SFB-rat-Yit 0 species species 0 Candidatus Arthromitus sp. SFB-mouse 1 366 49118 species 399 1508644 0 Candidatus Arthromitus sp. SFB-mouse-NL 1 1 151 186804 44022 11 Peptostreptococcaceae 0 family 1411023 600 0 1 no rank species 2081703 600 1 0 Peptostreptococcaceae bacterium oral taxon 929 2 Clostridioides 0 1870884 38748 genus 1 92 species 1 0 Clostridioides difficile 38656 1496 0 1 1481960 897 genus 1 0 Peptoclostridium acidaminophilum 897 1731 species 1 2 1035 44259 Filifactor 0 2 genus species 1033 143361 1 0 Filifactor alocis 1 1 0 Acetoanaerobium 2 186831 883 genus Acetoanaerobium sticklandii 0 1 1511 882 species 1 1 2 0 Paeniclostridium 1708 1849828 genus species 1 0 Paeniclostridium sordellii 1505 1707 family 3 Symbiobacteriaceae 0 979 543349 10 1 1 7 2733 969 Symbiobacterium 0 2 genus species 962 2734 0 Symbiobacterium thermophilum 1 family 17773 2304686 0 12 2304692 4324 3 0 genus 0 Herbivorax saccincola 1 1677857 968 species species [Clostridium] clariflavum 0 1 288965 1552 species Ruminiclostridium thermocellum 0 1 1515 1804 no rank 7065 2305130 1 0 1834198 7065 1 0 Ruminiclostridium sp. KB18 species 1 1 genus 1505 1637257 Mageeibacillus 0 2 species 1504 884684 1 0 Mageeibacillus indolicus 1 0 1118 2304691 genus 1118 1510 0 [Clostridium] stercorarium 1 species 3 1 genus 742 236752 2 Fastidiosipila 0 0 Fastidiosipila sanguinis 1 739 236753 species 1133 2304693 1 0 genus 0 [Clostridium] thermosuccinogenes 1 1133 84032 species genus 1508657 1886 2 Ruminiclostridium 0 115 1 1521 1771 1 0 [Clostridium] cellulolyticum species 1 5 8124 186806 0 Eubacteriaceae 5 family 1730 7281 2 Eubacterium 0 genus 1 136 0 Eubacterium limosum 1 7145 1736 species genus 2 Acetobacterium 0 838 33951 3 1 835 33952 1 Acetobacterium woodii 0 species family 0 2 68298 607 genus 0 1 132 129001 132 86170 Syntrophothermus lipocalidus 0 1 species genus 0 1 475 862 Syntrophomonas wolfei 0 1 863 475 species 1 642 26 0 Lachnospiraceae 186803 2501061 family genus 0 1 28050 153509 species 153509 39485 1 [Eubacterium] eligens 0 genus 57580 2719313 1 0 species 208479 57580 1 [Clostridium] bolteae 0 202 1 genus 60116 1506553 0 Lachnoclostridium 4 1 Lachnoclostridium phocaeense 0 1871021 30611 species no rank 0 1 21922 2608895 species Lachnoclostridium sp. YL32 0 1 21922 1834196 species 1 0 Lachnoclostridium phytofermentans 66219 7381 1663717 3265 2 0 Herbinix genus 1 2 3263 1679721 0 Herbinix luporum 1 species 45 1 genus 3 Blautia 0 68626 572511 1 0 2648079 27395 no rank species Blautia sp. YL58 0 1 27395 1796616 species 1 0 Blautia hansenii 1322 41186 genus 0 1 15463 2719231 15463 84030 1 [Clostridium] saccharolyticum 0 species no rank 0 2 1611672 186928 species 1 [Eubacterium] rectale 0 1605985 39491 712991 5687 0 Lachnospiraceae bacterium oral taxon 500 1 species genus 2039240 2417 2 0 Anaerotignum 13 1 28446 2404 1 Anaerotignum propionicum 0 species 21 1 genus 14651 830 0 Butyrivibrio 3 species 0 Butyrivibrio hungatei 1 185008 6928 43305 7702 1 0 Butyrivibrio proteoclasticus species 78 1 genus 2 0 Anaerostipes 207244 112643 species 0 Anaerostipes hadrus 1 112565 649756 genus 102600 2569097 1 0 species 1 [Eubacterium] hallii 0 102600 39488 1 0 3405 698776 genus species 3405 29360 0 Cellulosilyticum lentocellum 1 41 1 genus 0 Roseburia 2 294472 841 species Roseburia hominis 0 1 301301 294431 7 1 family 0 Heliobacteriaceae 3 31984 1417 genus 2697 1410 2 Heliobacterium 0 19 1 Heliobacterium modesticaldum 0 1 35701 1391 species 216572 12367 0 2 family genus 459786 12367 2 Oscillibacter 0 17 1 Oscillibacter valericigenes 0 1 12350 351091 species 11432 990719 0 Christensenellaceae 3 family 1 38 genus 2 Christensenella 0 990721 11394 169 1 species 11225 1805714 1 0 Christensenella massiliensis order 2636 2770089 0 4 2770092 664 2 0 family 499228 664 Tepidanaerobacter 0 2 genus 1 1 species Tepidanaerobacter acetatoxydans 0 1 663 499229 2770093 1972 2 0 family 2 0 Thermosediminibacter 291988 1972 genus 1 4 1 0 Thermosediminibacter oceani 1968 291990 species order 3492 53433 10 0 Halanaerobiales 2 1 family 1287 53434 4 0 Halobacteroidaceae 1 1 1 1 genus 0 Halobacteroides 2 869 42417 1 Halobacteroides halobius 0 868 42422 species genus 28186 417 1 0 species 417 28187 1 0 Acetohalobium arabaticum family 972 2203 0 Halanaerobiaceae 5 6 1 4 1 genus 1700 2330 3 0 Halanaerobium 0 Halanaerobium praevalens 1 1015 2331 species species 1 Halanaerobium hydrogeniformans 0 656519 681 genus 32636 497 1 0 0 Halothermothrix orenii 1 497 31909 species order 594 485256 3 0 Natranaerobiaceae 0 3 594 485255 family 1 3 genus 0 Natranaerobius 2 591 375928 3 1 species 375929 588 1 Natranaerobius thermophilus 0 order 15306 68295 36 0 Thermoanaerobacterales 8 1 family 186814 7218 0 Thermoanaerobacteraceae 18 5 1 1 84 9 Thermoanaerobacter 0 1754 4740 genus 1 0 Thermoanaerobacter kivui 2325 516 species 451 108150 1 Thermoanaerobacter italicus 0 species Thermoanaerobacter mathranii 0 1 490 583357 species species 654 29323 Thermoanaerobacter brockii 0 1 654 496866 1 0 Thermoanaerobacter pseudethanolicus species species 715 46354 1 0 Thermoanaerobacter wiegelii no rank 1176 2636821 0 2 species Thermoanaerobacter sp. X513 0 1 573062 580 species Thermoanaerobacter sp. X514 0 1 399726 596 no rank 0 3 1147 42857 0 1 42837 333 genus 333 42838 0 Ammonifex degensii 1 species genus Moorella 0 2 814 44260 5 1 species 809 1525 0 Moorella thermoacetica 1 Thermacetogenium 0 2 495 140458 genus 1 1 0 Thermacetogenium phaeum 1 85874 494 species genus 460 249529 2 0 Caldanaerobacter 3 1 species Caldanaerobacter subterraneus 0 1 457 911092 371 129957 0 1 genus species Carboxydothermus hydrogenoformans 0 1 371 129958 family 257 227387 0 2 genus 0 Thermodesulfobium 2 227388 257 1 1 1 Thermodesulfobium narugense 0 256 184064 species 2 0 543372 712 family 1 2 Mahella 0 2 712 252965 genus 710 252966 1 Mahella australiensis 0 species 1 13 7111 543371 13 0 Thermoanaerobacterales Family III. Incertae Sedis family genus 2605 28895 3 0 Thermoanaerobacterium 2 1 1813 1517 1 0 Thermoanaerobacterium thermosaccharolyticum species 29329 790 Thermoanaerobacterium xylanolyticum 0 1 species 4493 44000 0 Caldicellulosiruptor 9 genus 1 71 species Caldicellulosiruptor kristjanssonii 0 1 52765 458 44001 505 Caldicellulosiruptor saccharolyticus 0 1 species 1 0 Caldicellulosiruptor bescii 669 31899 species species Caldicellulosiruptor kronotskyensis 0 1 571 413889 species 531 52766 0 Caldicellulosiruptor lactoaceticus 1 1 0 Caldicellulosiruptor obsidiansis 717609 516 species 571 413888 1 Caldicellulosiruptor hydrothermalis 0 species 601 55205 Caldicellulosiruptor owensensis 0 1 species 1 1 class 11630 526524 11 0 Erysipelotrichia 526525 11629 Erysipelotrichales 0 10 order 1 5 11624 128827 9 Erysipelotrichaceae 0 family 1 257 no rank 1 0 5076 544447 species 1 Erysipelotrichaceae bacterium I46 0 1834207 5076 Faecalibaculum 0 2 1886 1729679 genus 1 3 species 1702221 1883 1 Faecalibaculum rodentium 0 1 15 3 0 Erysipelothrix 1647 965 genus species 0 Erysipelothrix rhusiopathiae 1 1648 496 species Erysipelothrix larvae 0 1 1514105 454 2 0 Turicibacter 3440 191303 genus 1 7 no rank 3433 2638206 1 0 3433 1712675 1 Turicibacter sp. H121 0 species 84086 590 0 1 no rank species 1 0 endosymbiont 'TC1' of Trimyema compressum 243899 590 0 137 1798711 33280 clade 1 3 Cyanobacteria 0 137 1117 33280 phylum 1 38 Nostocales 0 31 9926 1161 order 1 5 16 Nostocaceae 0 5627 1162 family genus 2 0 264688 450 239 264691 Trichormus variabilis 0 1 species species 211 1164 1 0 Trichormus azollae genus 0 3 1163 1369 species 543 1165 0 Anabaena cylindrica 1 826 2619674 0 2 no rank Anabaena sp. WA102 0 1 1647413 426 species species 46234 400 1 Anabaena sp. 90 0 14 1 genus Nostoc 0 10 3803 1177 species 272131 678 1 Nostoc punctiforme 0 2593658 2404 7 0 no rank species 499 1869241 Nostoc sp. CENA543 0 1 species 1751286 221 1 0 Nostoc sp. NIES-3756 species 0 Nostoc sp. PCC 7120 1 103690 234 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 1261031 542 species 0 Nostoc sp. PCC 7107 1 167 317936 species 1618022 290 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1 species species 0 Nostoc sp. PCC 7524 1 28072 451 1306274 707 Nostoc flagelliforme 0 1 species family 2661849 2641 0 8 1186 2641 0 Calothrix 8 genus 1 28 278 32054 0 Calothrix parietina 1 species no rank 2619626 2335 6 0 1 0 Calothrix sp. NIES-4071 564 2005469 species 2005462 226 1 0 Calothrix sp. NIES-3974 species 1337936 305 0 Calothrix sp. 336/3 1 species species 1 Calothrix sp. NIES-2098 0 1954171 332 337 99598 Calothrix sp. PCC 7507 0 1 species 1 0 Calothrix sp. NIES-4101 2005461 571 species family 424 1892263 2 0 1190 424 2 Fischerella 0 genus 1 1 no rank 1 0 423 494603 species Fischerella sp. NIES-3754 0 1 423 1752063 384 1219117 1 0 no rank Nostocales cyanobacterium HT-58-2 0 1 384 1940762 species 1185 812 Rivulariaceae 0 3 family 1 4 1 1 2 0 Rivularia 808 373984 genus 1 0 807 2676603 no rank species 0 Rivularia sp. PCC 7116 1 807 373994 0 1 208 1890505 order 0 1 208 1890528 family genus 1 0 208 54298 208 54299 0 Chroococcidiopsis thermalis 1 species 1 102 12660 1890424 54 0 Synechococcales order 3 Pseudanabaenaceae 0 101 1890436 family 1 8 1 1 93 1152 0 Pseudanabaena 2 genus no rank 2593292 92 0 1 species 1 Pseudanabaena sp. PCC 7367 0 82654 92 1 1 family 5 0 Prochloraceae 1213 1551 1 1 1218 1550 4 0 Prochlorococcus genus no rank 309 2627481 2 0 species Prochlorococcus sp. MIT 0801 0 1 1501269 129 species 1501268 180 1 Prochlorococcus sp. MIT 0604 0 1 0 Prochlorococcus marinus 1240 1219 species family 1310 1890428 4 0 genus 1142 1310 4 0 Synechocystis 9 1 2640012 1301 0 3 no rank species Synechocystis sp. PCC 6714 0 1 247 1147 1148 527 1 0 Synechocystis sp. PCC 6803 species species 0 Synechocystis sp. IPPAS B-1465 1 2116702 527 family 33 0 Synechococcaceae 1890426 7338 22 1 13034 244 2 0 Dactylococcopsis genus 1 3 species 292566 241 Dactylococcopsis salina 0 1 genus 0 1 151 146785 species 151 146786 1 0 Thermosynechococcus elongatus 76 1 genus 3 0 Cyanobium 167375 1447 2627006 686 0 1 no rank species 1 Cyanobium sp. NIES-981 0 1851505 686 1 0 Cyanobium gracile 685 59930 species 60 1 genus 26 Synechococcus 0 1129 5474 species 194 32046 0 Synechococcus elongatus 1 2626047 4840 0 23 no rank 214 316278 1 Synechococcus sp. RCC307 0 species 87 316279 0 Synechococcus sp. CC9902 1 species 0 Synechococcus sp. JA-2-3B'a(2-13) 1 321332 338 species 1 0 Synechococcus sp. KORDI-52 585425 209 species species Synechococcus sp. PCC 8807 0 1 96 195248 0 Synechococcus sp. NIES-970 1 199 1827144 species species Synechococcus sp. WH 7803 0 1 224 32051 255 1350461 Synechococcus sp. UTEX 2973 0 1 species species 0 Synechococcus sp. WH 8102 1 283 84588 374982 83 1 0 Synechococcus sp. PCC 73109 species 1 0 Synechococcus sp. CC9605 184 110662 species 259 1280380 1 Synechococcus sp. KORDI-100 0 species species Synechococcus sp. PCC 7003 0 1 225 374981 92 32049 1 0 Synechococcus sp. PCC 7002 species species 195253 76 Synechococcus sp. PCC 6312 0 1 1 Synechococcus sp. WH 8103 0 29410 205 species species 1 0 Synechococcus sp. SynAce01 1916956 312 species Synechococcus sp. PCC 7117 0 1 195498 98 species Synechococcus sp. JA-3-3Ab 0 1 321327 445 species 1 Synechococcus sp. PCC 7502 0 1173263 242 0 Synechococcus sp. KORDI-49 1 258 585423 species species Synechococcus sp. CC9311 0 1 263 64471 species Synechococcus sp. WH 8109 0 1 166314 193 380 33070 1 0 Synechococcus lividus species 2303730 236 1 0 family genus 170610 236 0 1 1209493 236 0 Halomicronema hongdechloris 1 species family 1 0 1890429 291 291 155977 0 1 genus species 155978 291 1 Acaryochloris marina 0 1890438 1731 6 0 Leptolyngbyaceae family 1 6 genus 47251 1725 5 0 Leptolyngbya 6 1 Leptolyngbya boryana 0 1 361 1184 species no rank 2650499 1358 3 0 131 111781 0 Leptolyngbya sp. PCC 7376 1 species species 1080068 717 Leptolyngbya sp. O-77 0 1 species 1 Leptolyngbya sp. NIES-3755 0 510 1752064 1 1 class 0 Gloeobacteria 6 307596 865 1 5 307595 864 0 Gloeobacterales 5 order 4 1 family 859 1890422 0 Gloeobacteraceae 4 genus 33071 855 Gloeobacter 0 3 8 1 species 1416614 485 0 Gloeobacter kilaueensis 1 species 0 Gloeobacter violaceus 1 33072 362 1 0 1983111 266 no rank 718217 266 cyanobacterium endosymbiont of Epithemia turgida 0 1 species 2 1 order 1371 52604 0 Pleurocapsales 5 Dermocarpellaceae 0 3 1890498 1189 family 1 5 genus 2 0 1184 102115 no rank 2642663 445 1 0 species 445 1807358 Stanieria sp. NIES-3757 0 1 1 Stanieria cyanosphaera 0 102116 739 species family 1890500 180 0 1 180 44474 0 1 genus 1 0 Pleurocapsa minor 54308 180 species subclass 7981 1301283 0 38 1 2 4747 1118 Chroococcales 0 20 order 1 2 1012 1890449 3 Microcystaceae 0 family genus 1125 1010 2 0 2643300 433 0 1 no rank species 1967666 433 1 0 Microcystis sp. MC19 1126 577 1 0 Microcystis aeruginosa species 8 0 1756 1890450 family 141 92682 2 0 no rank 0 Halothece 2 76023 141 genus 1 3 no rank 2632878 138 1 0 138 65093 1 Halothece sp. PCC 7418 0 species 1 0 231 263510 genus species 1 0 2546360 231 strain 1 0 Cyanothece sp. ATCC 51142 231 43989 genus 160 1453359 0 1 species 713887 160 Candidatus Atelocyanobacterium thalassa 0 1 0 2 456 2546365 genus 456 2546366 2 0 species Cyanothece sp. PCC 8801 0 1 221 41431 strain 235 395962 0 Cyanothece sp. PCC 8802 1 strain 768 28070 2 0 genus 2546359 382 0 1 species strain 0 Cyanothece sp. PCC 7822 1 497965 382 2546356 386 1 0 species 65393 386 1 Cyanothece sp. PCC 7424 0 strain 5 1 family 0 Chroococcaceae 6 1890464 1379 274 268175 1 0 genus 274 2648896 0 1 no rank species 2005460 274 1 0 Chondrocystis sp. NIES-4102 genus Geminocystis 0 3 945 669357 1 1 0 2 2625037 944 no rank 1617448 329 0 Geminocystis sp. NIES-3709 1 species Geminocystis sp. NIES-3708 0 1 1615909 615 species 1 0 102231 155 genus 0 1 2623012 155 no rank 1 0 Gloeocapsa sp. PCC 7428 1173026 155 species 598 1890452 0 2 family 0 Cyanobacterium 2 598 102234 genus 1 2 species 596 379064 Cyanobacterium aponinum 0 1 1 27 Oscillatoriales 0 18 3234 1150 order 1 1 family 2 0 Gomontiellaceae 384 1892255 genus 0 1 383 241421 species 241425 383 0 Crinalium epipsammum 1 family 919 1892252 0 Microcoleaceae 3 1 1 580 1205 1 0 genus species 0 Trichodesmium erythraeum 1 580 1206 1 0 44471 338 genus 0 1 338 2642155 no rank 1 Microcoleus sp. PCC 7113 0 338 1173027 species family 1422 1892254 Oscillatoriaceae 0 6 1 1 1 1 genus Moorea 0 2 534 1155738 533 1155739 0 Moorea producens 1 species 1 3 3 0 Oscillatoria 1158 887 genus 332 118323 Oscillatoria acuminata 0 1 species 482564 552 1 0 Oscillatoria nigro-viridis species 2 1 family 0 Coleofasciculaceae 3 251 1892251 1 1 249 63132 0 Geitlerinema 2 genus no rank 1 0 2648775 248 1173025 248 0 Geitlerinema sp. PCC 7407 1 species family 231 1892249 Cyanothecaceae 0 3 6 1 1 3 2 Cyanothece 0 225 43988 genus no rank 1 0 222 2649277 222 395961 1 Cyanothece sp. PCC 7425 0 species 100 0 544448 17756 phylum 1 10 0 Mollicutes 96 16240 31969 class 3 1 order 0 Acholeplasmatales 13 2019 186329 12 Acholeplasmataceae 0 2146 2016 family 1 10 1 4 2147 1659 5 0 Acholeplasma genus species 1 0 Acholeplasma laidlawii 330 2148 species Acholeplasma palmae 0 1 38986 633 species 1 0 Acholeplasma oculi 336 35623 species 0 Acholeplasma brassicae 1 61635 356 347 33926 6 0 Candidatus Phytoplasma genus 1 4 85632 76 0 1 species group 59748 76 Candidatus Phytoplasma australiense 0 1 species 85620 174 0 3 species group 229545 64 1 0 Aster yellows witches'-broom phytoplasma species species 0 Onion yellows phytoplasma 1 50 100379 Maize bushy stunt phytoplasma 0 1 60 202462 species species group 93 85630 0 1 Candidatus Phytoplasma mali 0 1 37692 93 species order 2085 7023 43 Mycoplasmatales 0 3 1 family 2092 7020 Mycoplasmataceae 0 42 18 1 genus 0 2 2129 391 0 Ureaplasma urealyticum 1 2130 89 species species 0 Ureaplasma parvum 1 302 134821 genus 2767358 2068 12 0 species 1 0 Mycoplasma cynos 89 171284 species 2115 215 1 0 Mycoplasma fermentans species 0 Mycoplasma bovirhinis 1 204 29553 135 2107 1 Mycoplasma pulmonis 0 species species 29555 258 Mycoplasma canis 0 1 399 28903 0 Mycoplasma bovis 1 species species 58 2113 0 Mycoplasma californicum 1 48003 82 Mycoplasma pullorum 0 1 species 0 Mycoplasma bovigenitalium 1 225 2112 species species 168 2110 1 0 Mycoplasma agalactiae 2094 99 Mycoplasma arginini 0 1 species 136 2109 1 0 Mycoplasma synoviae species 1 42 2093 4543 Mycoplasma 0 27 genus 2098 609 Mycoplasma hominis 0 1 species 65123 32 1 Mycoplasma wenyonii 0 species species 45 2128 0 Mycoplasma flocculare 1 species 1 0 Mycoplasma arthritidis 2111 185 species 1 Mycoplasma suis 0 57372 64 1 Mycoplasma crocodyli 0 170 50052 species no rank 279 2683645 1 0 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1 279 1749074 species species 51 171632 1 Mycoplasma ovis 0 species 1 0 Mycoplasma yeatsii 157 51365 656088 1162 3 0 species group 0 Mycoplasma leachii 1 2105 293 species species 2095 383 1 Mycoplasma capricolum 0 1 Mycoplasma mycoides 0 2102 486 species 29554 224 0 Mycoplasma canadense 1 species species 30 29501 0 Mycoplasma haemofelis 1 112 28227 1 0 Mycoplasma penetrans species 1 Mycoplasma pneumoniae 0 40 2104 species 247 2123 0 Mycoplasma putrefaciens 1 species species 1 Mycoplasma hyorhinis 0 336 2100 species 86660 131 Mycoplasma dispar 0 1 0 Mycoplasma hyopneumoniae 1 112 2099 species 2096 192 Mycoplasma gallisepticum 0 1 species 0 Mycoplasma parvum 1 48 984991 species species Mycoplasma genitalium 0 1 2097 41 136241 7 Mycoplasma haemocanis 0 1 species species Mycoplasma bovoculi 0 1 119 45362 2118 108 1 0 Mycoplasma mobile species 1 9 0 Entomoplasmatales 39 186328 7188 order 7 1 family 4822 2131 24 Spiroplasmataceae 0 4815 2132 23 0 Spiroplasma genus 1 27 species 216934 181 0 Spiroplasma corruscae 1 species 165 2133 Spiroplasma citri 0 1 species 0 Spiroplasma clarkii 1 2139 209 113 216936 1 0 Spiroplasma diminutum species 0 Spiroplasma kunkelii 1 47834 233 species Spiroplasma floricola 0 1 216937 305 species 1 0 Spiroplasma cantharicola 320 362837 species species 1 Spiroplasma apis 0 191 2137 species 2145 200 1 Spiroplasma taiwanense 0 216938 213 Spiroplasma helicoides 0 1 species 121 216944 1 Spiroplasma sabaudiense 0 species species 1 Spiroplasma atrichopogonis 0 147 1114980 no rank 494 2637901 2 0 1898044 247 1 0 Spiroplasma sp. TU-14 species 1 0 Spiroplasma sp. NBRC 100390 1914410 247 species 216935 361 1 Spiroplasma culicicola 0 species species 1 0 Spiroplasma syrphidicola 273 216945 species 147 2136 Spiroplasma monobiae 0 1 1 0 Spiroplasma turonicum 216946 261 species 1 0 Spiroplasma mirum 2144 144 species species 1 Spiroplasma litorale 0 170 216942 species 1 Spiroplasma chrysopicola 0 216933 238 species 1 Spiroplasma eriocheiris 0 302 315358 4 1 family 2357 33925 14 0 Entomoplasmataceae 1 10 46238 788 Entomoplasma 0 5 genus 1 0 Entomoplasma luminosum 214888 250 species Entomoplasma melaleucae 0 1 81459 220 species species 246 215578 1 Entomoplasma somnilux 0 species 62 74700 Entomoplasma freundtii 0 1 46239 1565 Mesoplasma 0 8 genus 1 21 Mesoplasma chauliocola 0 1 168 216427 species 589 2151 1 Mesoplasma florum 0 species species 324078 207 1 0 Mesoplasma coleopterae species 2149 120 0 Mesoplasma entomophilum 1 0 Mesoplasma lactucae 1 222 138853 species 219745 90 1 0 Mesoplasma tabanidae species species 148 225999 1 0 Mesoplasma syrphidae 2 0 476 2799557 no rank 1 1 0 Candidatus Izimaplasma 2 1912503 476 genus no rank 475 2624196 0 1 0 Candidatus Izimaplasma sp. HR1 1 475 1541959 species 0 2 713063 1040 no rank 1 Tenericutes bacterium MO-XQ 0 536 1911684 species 1 Tenericutes bacterium MZ-XQ 0 1911683 504 species 1297 9417 36 0 phylum 9417 188787 0 Deinococci 36 class 1 61 order 0 Deinococcales 15 118964 5456 49 1 family 14 Deinococcaceae 0 5407 183710 39 1 genus 5368 1298 13 0 Deinococcus 67 1 species 310783 412 1 0 Deinococcus deserti 2623546 396 1 0 no rank 0 Deinococcus sp. NW-56 1 2080419 396 species 1 Deinococcus peraridilitoris 0 432329 275 species species 1309411 422 Deinococcus soli Cha et al. 2016 0 1 species 1 0 Deinococcus proteolyticus 55148 575 species Deinococcus radiodurans 0 1 1299 413 species 0 Deinococcus puniceus 1 1182568 333 species 68909 315 Deinococcus geothermalis 0 1 species 309887 475 Deinococcus maricopensis 0 1 1182571 639 1 0 Deinococcus swuensis species species 1768108 495 1 0 Deinococcus actinosclerus species 0 Deinococcus gobiensis 1 551 502394 3595 68933 17 0 Thermales order 1 58 family 16 0 Thermaceae 188786 3537 12 1 1 4 186191 207 2 Marinithermus 0 genus species 203 186192 1 Marinithermus hydrothermalis 0 55 1 genus 8 Thermus 0 2125 270 species 1 0 Thermus scotoductus 180 37636 0 Thermus aquaticus 1 310 271 species 2619321 269 1 0 no rank 269 1111069 Thermus sp. CCB_US3_UF1 0 1 species 1 0 Thermus brockianus 56956 146 species species Thermus oshimai 0 1 56957 331 species 623 274 1 0 Thermus thermophilus species 1 Thermus parvatiensis 0 456163 211 557 208447 0 Oceanithermus 2 genus 1 2 187137 555 1 0 Oceanithermus profundus species 65551 636 3 Meiothermus 0 genus 1 3 species 314 277 0 Meiothermus ruber 1 52022 319 0 Meiothermus silvanus 1 species order 3 0 2762275 305 1 2 332247 305 0 Trueperaceae 3 family genus 0 Truepera 2 332248 303 3 1 332249 300 Truepera radiovictrix 0 1 species 1 37 366835 201174 631 Actinobacteria 0 phylum 511 84992 6 0 Acidimicrobiia class 1 1 1 10 84993 510 0 Acidimicrobiales 5 order 0 2 402 2448023 family 682522 402 2 0 Ilumatobacter genus 1 3 species 399 467094 1 Ilumatobacter coccineus 0 1 5 Acidimicrobiaceae 0 2 84994 98 family genus 1 0 93 53634 1 0 Acidimicrobium ferrooxidans 93 53635 species no rank 339 1752188 0 4 1848255 35 1 Actinobacteria bacterium IMCC25003 0 species species 125 1848754 0 Actinobacteria bacterium IMCC19121 1 Actinobacteria bacterium IMCC26077 0 1 1848755 105 species 1 Actinobacteria bacterium IMCC26103 0 1848756 74 species class 0 Thermoleophilia 5 560 1497346 2 1 31 1 order 558 588673 4 0 Solirubrobacterales 320583 527 3 Conexibacteraceae 0 family 1 7 33 1 genus 2 0 Conexibacter 520 191494 species 0 Conexibacter woesei 1 191495 487 353 1 class 84998 74540 29 0 Coriobacteriia 1 298 0 Coriobacteriales 14 84999 52720 order 48 1 family 1643824 4552 Atopobiaceae 0 7 1 0 Atopobium 1 1380 genus genus 4 Olsenella 0 4060 133925 141 1 1805478 1823 0 Olsenella sp. Marseille-P2300 1 species no rank 0 1 911 2638792 911 712411 1 Olsenella sp. oral taxon 807 0 species species 1185 133926 0 Olsenella uli 1 genus 1 0 2767353 443 species 1382 443 Atopobium parvulum 0 1 1 227 0 Coriobacteriaceae 6 47870 84107 family 1 1 genus 502 33870 2 Coriobacterium 0 species 33871 501 Coriobacterium glomerans 0 1 1 17 2 Collinsella 0 102106 46176 genus species 74426 46159 1 Collinsella aerofaciens 0 965 84113 0 1 no rank 965 1531429 1 0 Coriobacteriaceae bacterium 68-1-3 species 0 Eggerthellales 14 1643822 21467 order 1 409 3538 1 family Eggerthellaceae 0 13 1643826 21058 Cryptobacterium 0 2 502 84162 genus 1 11 0 Cryptobacterium curtum 1 491 84163 species 447020 1841 1 0 genus species 1841 446660 0 Adlercreutzia equolifaciens 1 genus 1 0 3436 1981050 3436 1944646 0 Phoenicibacter massiliensis 1 species 1 0 836 79603 genus 836 79604 0 Denitrobacterium detoxificans 1 species 1 13 3461 644652 3 Gordonibacter 0 genus 0 Gordonibacter urolithinfaciens 1 1854 1335613 species 0 Gordonibacter massiliensis 1 1841863 1594 species genus 1472 84108 1 0 species 1 Slackia heliotrinireducens 0 84110 1472 5972 84111 3 0 Eggerthella genus 1 80 species Eggerthella lenta 0 1 84112 4933 1 0 2648737 959 no rank species 502558 959 Eggerthella sp. YY7918 0 1 2 1 class 593 84995 6 Rubrobacteria 0 1 11 591 84996 5 0 Rubrobacterales order family 580 84997 Rubrobacteraceae 0 4 1 1 1 7 579 42255 3 Rubrobacter 0 genus 42256 171 0 Rubrobacter radiotolerans 1 species 0 Rubrobacter xylanophilus 1 401 49319 species 1 1937 0 Actinobacteria 580 290255 1760 class 85008 7167 Micromonosporales 0 20 order 1 10 1 96 Micromonosporaceae 0 19 7157 28056 family 1 18 4 Micromonospora 0 1873 1379 genus species 0 Micromonospora aurantiaca 1 47850 474 Verrucosispora maris 0 1 320 1003110 species no rank 1 0 2617518 567 species 1 Micromonospora sp. L5 0 648999 567 1 61 4 0 Plantactinospora 673534 1916 genus 1855 2631981 3 0 no rank 2071627 650 1 0 Plantactinospora sp. BB1 species 1 Plantactinospora sp. KBS50 0 2024580 540 species species 1 Plantactinospora sp. BC1 0 2108470 665 1 84593 0 Verrucosispora 1 genus 168694 649 Salinispora 0 3 genus 1 8 species Salinispora arenicola 0 1 168697 341 168695 300 1 Salinispora tropica 0 species 1 40 Actinoplanes 0 6 1865 3116 genus 631 1866 1 0 Actinoplanes missouriensis species species 196914 723 1 Actinoplanes friuliensis 0 no rank 3 0 2626549 1722 0 Actinoplanes sp. N902-109 1 649831 626 species species 134676 548 1 0 Actinoplanes sp. SE50/110 species 0 Actinoplanes sp. SE50 1 2033844 548 order 718 414714 0 Catenulisporales 4 4 1 1 12 3 Catenulisporaceae 0 414877 714 family genus 414878 702 0 Catenulispora 2 8 1 species 1 Catenulispora acidiphila 0 304895 694 1 9 Candidatus Nanopelagicales 0 12 1220 2039638 order family 1211 2162846 11 0 7 0 Candidatus Planktophila 622681 977 genus 1 14 species 573600 226 0 Candidatus Planktophila limnetica 1 0 Candidatus Planktophila versatilis 1 211 1884905 species species 1884904 71 Candidatus Planktophila sulfonica 0 1 1 Candidatus Planktophila lacus 0 1884913 142 species 1 0 Candidatus Planktophila dulcis 1884914 197 species species 116 1884907 Candidatus Planktophila vernalis 0 1 1 12 Candidatus Nanopelagicus 0 4 234 2039639 genus species Candidatus Nanopelagicus abundans 0 1 89 1884916 species 1884634 62 Candidatus Nanopelagicus limnes 0 1 1884915 71 Candidatus Nanopelagicus hibericus 0 1 species 1 33 7408 85009 32 Propionibacteriales 0 order family 31957 4860 19 Propionibacteriaceae 0 39 1 1 22 1743 752 Propionibacterium 0 3 genus no rank 1 0 109 2608905 species 109 671223 1 Propionibacterium sp. oral taxon 193 0 1 0 Propionibacterium freudenreichii 621 1744 species 1 0 395 203133 genus no rank 1 0 395 2633994 1 Propionimicrobium sp. Marseille-P3275 0 1871034 395 species 3 1 genus 4 0 Cutibacterium 1122 1912216 485 1747 Cutibacterium acnes 0 1 species 33011 247 Cutibacterium granulosum 0 1 species species 387 33010 1 Cutibacterium avidum 0 298 29404 0 Microlunatus 2 genus 1 1 29405 297 1 0 Microlunatus phosphovorus species 2 1 genus 497 1912215 2 Acidipropionibacterium 0 1 0 Acidipropionibacterium acidipropionici 495 1748 species 303 2801844 0 1 genus 1 0 Pseudopropionibacterium propionicum 303 1750 species 6 1 genus Tessaracoccus 0 5 1454 72763 Tessaracoccus flavus 0 1 1610493 338 species 1332264 378 1 Tessaracoccus aquimaris 0 species species 332 399497 0 Tessaracoccus flavescens 1 2635419 400 0 1 no rank 1909732 400 1 0 Tessaracoccus sp. T2.5-30 species 1 56 Nocardioidaceae 0 12 2515 85015 family 2044 451 0 1 genus 2045 451 0 Pimelobacter simplex 1 species 1 3 257 2040 Aeromicrobium 0 2 genus 2041 254 1 0 Aeromicrobium erythreum species genus 0 Micropruina 2 116071 355 3 1 species 0 Micropruina glycogenica 1 352 75385 13 1 genus Nocardioides 0 4 1839 964 Nocardioides sp. 78 0 1 2045452 307 species no rank 2615069 352 0 1 196162 352 1 Nocardioides sp. JS614 0 species species 0 Nocardioides dokdonensis 1 450734 292 5 1 genus 432 182639 2 Kribbella 0 Kribbella flavida 0 1 427 182640 species 1 16 7989 2037 17 Actinomycetales 0 order 1 1894 2049 7973 16 0 Actinomycetaceae family genus 1 0 1069494 498 0 Trueperella pyogenes 1 498 1661 species 38 1 genus 1090 2050 2 0 Mobiluncus species 1 0 Mobiluncus curtisii 1052 2051 genus 783 2529408 0 1 species 52773 783 1 0 Actinomyces meyeri 1 51 Actinomyces 0 9 1654 3166 genus species 0 Actinomyces oris 1 544580 438 173 1912795 1 0 Actinomyces sp. VUL4_3 species species 1 0 Actinomyces pacaensis 801 1852377 1960083 229 1 Actinomyces gaoshouyii 0 species no rank 2609248 1091 0 3 species 1 0 Actinomyces sp. Chiba101 269 1851395 species 448 712122 0 Actinomyces sp. oral taxon 414 1 1 0 Actinomyces sp. oral taxon 897 374 2081702 species Actinomyces radicidentis 0 1 383 111015 species genus 220 1653174 1 0 0 Actinotignum schaalii 1 220 59505 species genus 0 1 322 28263 species 322 28264 1 Arcanobacterium haemolyticum 0 no rank 2 0 300 1643818 1 2 147067 300 2 Thermobispora 0 genus 298 2006 1 0 Thermobispora bispora species 1 1 order 1597 85013 Frankiales 0 7 family 6 0 Frankiaceae 74712 1596 22 1 0 Frankia 5 1574 1854 genus 1 21 no rank 2632575 424 0 1 424 298653 1 0 Frankia sp. EAN1pec species species 1 Frankia casuarinae 0 265 106370 0 Frankia alni 1 406 1859 species species 298654 458 Frankia inefficax 0 1 521 1643684 0 3 order family 3 Nakamurellaceae 0 521 85031 20 1 genus 2 0 Nakamurella 53460 501 4 1 0 Nakamurella multipartita 1 53461 497 species order 85007 45381 160 0 Corynebacteriales 321 1 3 0 85028 708 family genus 2060 708 3 Tsukamurella 0 64 1 2061 229 1 Tsukamurella paurometabola 0 species species 415 57704 1 Tsukamurella tyrosinosolvens 0 443 85029 0 3 family 7 1 genus 0 Dietzia 3 443 37914 species 1 0 Dietzia timorensis 499555 203 no rank 233 2617939 1 0 Dietzia sp. oral taxon 368 0 1 712270 233 species 123 1 family 15708 1653 0 Corynebacteriaceae 52 Corynebacterium 0 51 1716 15585 genus 1 336 1 0 Corynebacterium phocae 222 161895 species species 1408191 177 Corynebacterium deserti 0 1 258224 158 Corynebacterium resistens 0 1 species 377 161896 1 Corynebacterium camporealensis 0 species species 161879 266 1 Corynebacterium kroppenstedtii 0 species 1 0 Corynebacterium crudilactis 1652495 156 1 0 Corynebacterium aquilae 304 203263 species species 324 1223514 0 Corynebacterium humireducens 1 species 103 191610 1 0 Corynebacterium atypicum 1 0 Corynebacterium diphtheriae 1717 320 species 396 187491 Corynebacterium glaucum 0 1 species species Corynebacterium maris 0 1 296 575200 717 38289 1 Corynebacterium jeikeium 0 species species 441 1727 1 0 Corynebacterium variabile species Corynebacterium flavescens 0 1 28028 315 species 1 Corynebacterium simulans 0 146827 377 species 338 65058 1 Corynebacterium ulcerans 0 species 1 Corynebacterium argentoratense 0 218 42817 species 1 0 Corynebacterium testudinoris 201 136857 species 383 152794 0 Corynebacterium efficiens 1 228 1697 0 Corynebacterium ammoniagenes 1 species Corynebacterium urealyticum 0 1 43771 246 species 0 Corynebacterium lactis 1 1231000 353 species 172 92706 1 0 [Brevibacterium] flavum species species Corynebacterium glyciniphilum 0 1 222 1404244 species 0 Corynebacterium cystitidis 1 35757 173 species 0 Corynebacterium kutscheri 1 35755 568 species 391 1230998 0 Corynebacterium frankenforstense 1 1 0 Corynebacterium callunae 1721 223 species species 0 Corynebacterium imitans 1 326 156978 43770 549 Corynebacterium striatum 0 1 species species 1 0 Corynebacterium sphenisci 458 191493 species 1072256 393 0 Corynebacterium uterequi 1 297 349751 Corynebacterium marinum 0 1 species species 0 Corynebacterium terpenotabidum 1 264 89154 0 Corynebacterium mustelae 1 571915 141 species species Corynebacterium ureicelerivorans 0 1 196 401472 0 2 585 2624378 no rank 427 1487956 Corynebacterium sp. ATCC 6931 0 1 species 0 Corynebacterium sp. NML98-0116 1 702967 158 species 1121358 356 Corynebacterium doosanense 0 1 species species 108486 331 1 0 Corynebacterium falsenii 0 Corynebacterium casei 1 191 160386 species species 225326 389 0 Corynebacterium halotolerans 1 243 169292 1 0 Corynebacterium aurimucosum species species 1 0 Corynebacterium singulare 161899 261 Corynebacterium pseudotuberculosis 0 1 1719 234 species species 1705 316 0 Corynebacterium stationis 1 species 517 38305 1 Corynebacterium vitaeruminis 0 species 1050174 127 1 Corynebacterium epidermidicanis 0 1718 410 1 Corynebacterium glutamicum 0 species family 3 0 Segniliparaceae 316606 199 6 1 1 1 genus 2 0 Segniliparus 193 286801 species 1 0 Segniliparus rotundus 192 286802 9 Gordoniaceae 0 85026 2370 family 1 19 2053 2351 Gordonia 0 8 genus 1 45 species 412 2054 1 0 Gordonia bronchialis Gordonia iterans 0 1 1004901 271 species 1136941 317 1 Gordonia phthalatica 0 species 421 2055 Gordonia terrae 0 1 species 281 84595 Gordonia polyisoprenivorans 0 1 species 0 2 604 2657482 no rank 273 2059875 1 0 Gordonia sp. YC-JH1 species 0 Gordonia sp. KTR9 1 331 337191 species 2 0 254 697024 no rank 0 Lawsonella 2 254 1847725 genus 1 1 1 Lawsonella clevelandensis 0 1528099 253 species 0 Mycobacteriaceae 56 15075 1762 family 1 25 1285 670516 0 5 genus species 36809 487 1 Mycobacterium abscessus 0 species 163 83262 Mycobacterium immunogenum 0 1 species 219 1520670 Mycobacterium stephanolepidis 0 1 species 176 1774 1 0 Mycobacterium chelonae Mycobacterium saopaulense 0 1 240 1578165 species 2 0 492 1073531 genus 255 1788 Mycobacterium terrae 0 1 species species 1 0 Mycobacterium sinense 237 875328 669 1 genus Mycobacterium 0 34 1763 8534 no rank 2642494 3436 13 0 0 Mycobacterium sp. EPa45 1 295 1545728 species 189918 215 1 Mycobacterium sp. KMS 0 species species Mycobacterium sp. MCS 0 1 206 164756 species 1 0 Mycobacterium sp. PYR15 277 2051552 species 0 Mycobacterium sp. WY10 1 1920667 303 1682113 366 Mycobacterium sp. YC-RL4 0 1 species 372 1879023 1 0 Mycobacterium sp. djl-10 species species 1570328 252 1 Mycobacterium sp. NRRL B-3805 0 297 212767 1 Mycobacterium sp. JS623 0 species species 196 1561223 1 0 Mycobacterium sp. QIA-37 species 164757 222 Mycobacterium sp. JLS 0 1 297 1273687 1 Mycobacterium sp. VKM Ac-1817D 0 species species Mycobacterium sp. MOTT36Y 0 1 1168287 138 species group 252 2249310 1 0 0 Mycobacterium shigaense 1 252 722731 species species group 0 4 77643 524 species 1 0 Mycobacterium canettii 78331 133 1 144 3 0 Mycobacterium tuberculosis 1773 391 species biotype Mycobacterium bovis 0 1 1765 125 Mycobacterium africanum 0 1 122 33894 biotype species 0 Mycobacterium leprae 1 193 1769 species 0 Mycobacterium haemophilum 1 29311 170 1 Mycobacterium liflandii 0 203 261524 species species 320 1768 1 0 Mycobacterium kansasii Mycobacterium ulcerans 0 1 220 1809 species 1 0 Mycobacterium dioxanotrophicus 373 482462 species species group 120793 1956 0 8 species 701042 208 0 Mycobacterium marseillense 1 1 150 Mycobacterium intracellulare 0 4 688 1767 species subspecies 105 1203599 1 Mycobacterium yongonense 0 subspecies 222805 344 Mycobacterium chimaera 0 1 1 0 Mycobacterium indicus pranii 89 35617 subspecies species 145 1138383 Mycobacterium paraintracellulare 0 1 species 343 339268 1 Mycobacterium colombiense 0 572 1764 0 Mycobacterium avium 1 species species 1781 218 0 Mycobacterium marinum 1 genus 0 13 4577 1866885 species 1810 351 1 0 Mycobacterium vaccae species 1766 320 Mycobacterium fortuitum 0 1 species 1 Mycobacterium smegmatis 0 429 1772 1 Mycobacterium rhodesiae 0 341 36814 species 434 1791 1 Mycobacterium aurum 0 species species 1804 296 0 Mycobacterium gilvum 1 species 263 110539 0 Mycobacterium vanbaalenii 1 0 Mycobacterium phlei 1 1771 279 species species 1 Mycobacterium litorale 0 374 758802 1797 316 Mycobacterium thermoresistibile 0 1 species 608 134601 0 Mycobacterium goodii 1 species 1 Mycobacterium chubuense 0 314 1800 species Mycobacterium neoaurum 0 1 252 1795 species genus 162 697025 1 0 162 639313 1 0 Hoyosella subflava species 1 38 0 Nocardiaceae 31 10303 85025 family genus 3578 1817 7 0 Nocardia 30 1 37329 440 0 Nocardia farcinica 1 species Nocardia terpenica 0 1 455432 451 species species Nocardia nova 0 1 37330 556 1 0 Nocardia seriolae 37332 580 species species Nocardia cyriacigeorgica 0 1 135487 729 792 37326 0 Nocardia brasiliensis 1 species 23 Rhodococcus 0 6687 1827 genus 1 232 species 350 1830 Rhodococcus ruber 0 1 species 1 0 Rhodococcus fascians 351 1828 species 1 Rhodococcus jostii 0 132919 441 species 1 Rhodococcus pyridinivorans 0 103816 238 species 1 0 Rhodococcus opacus 1057 37919 1833 319 0 Rhodococcus erythropolis 1 species no rank 0 12 192944 2638 species 1 Rhodococcus sp. PBTS 2 0 1653479 246 1723645 187 0 Rhodococcus sp. 008 1 species species 0 Rhodococcus sp. B7740 1 1564114 232 Rhodococcus sp. WB1 0 1 1033922 369 species 1 Rhodococcus sp. p52 0 935199 188 species 1 Rhodococcus sp. WMMA185 0 119 679318 species species 1 0 Rhodococcus sp. H-CA8f 210 1727214 species 259 1805827 1 0 Rhodococcus sp. MTM3W5.2 1045808 202 Rhodococcus sp. YL-1 0 1 species 223 1653478 0 Rhodococcus sp. PBTS 1 1 species species Rhodococcus sp. BH4 0 1 1807790 183 0 Rhodococcus sp. 2G 1 220 1570939 species species 1 0 Rhodococcus qingshengii 334542 189 species 1 0 Rhodococcus hoagii 326 43767 177 1829 1 0 Rhodococcus rhodochrous species species 369 191292 0 Rhodococcus aetherivorans 1 order 2 0 160 1643683 85032 160 2 0 family 160 28048 Acidothermus 0 2 genus 1 1 0 Acidothermus cellulolyticus 1 28049 159 species 40 Pseudonocardiales 0 13462 85010 order 1 34 family 0 Pseudonocardiaceae 39 2070 13428 155 1 genus 2 0 Kibdelosporangium 2029 454 2 1 Kibdelosporangium phytohabitans 0 1 860235 452 species 1 1 612 2071 2 0 Saccharothrix genus species 0 Saccharothrix espanaensis 1 103731 611 3 1 genus 2 Kutzneria 0 873 43356 Kutzneria albida 0 1 870 43357 species 14 1 genus Actinosynnema 0 3 40566 1224 species 40567 563 1 0 Actinosynnema mirum 1 Actinosynnema pretiosum 0 647 42197 species 1 89 65496 2181 Actinoalloteichus 0 6 genus no rank 2644606 883 2 0 1612551 452 0 Actinoalloteichus sp. GBA129-24 1 species 431 2072503 Actinoalloteichus sp. AHMU CJ021 0 1 species species 0 Actinoalloteichus hymeniacidonis 1 302 340345 1 0 Actinoalloteichus sp. ADI127-7 475 1612552 species species 432 1470176 1 0 Actinoalloteichus hoggarensis 7 Amycolatopsis 0 1813 3470 genus 1 53 species 917 31958 1 0 Amycolatopsis orientalis 1 0 Amycolatopsis japonica 428 208439 species species 384 1814 0 Amycolatopsis methanolica 1 Amycolatopsis mediterranei 0 1 709 33910 species 0 2 2618356 979 no rank 1911175 440 Amycolatopsis sp. BJA-103 0 1 species species 1896961 539 1 0 Amycolatopsis sp. AA4 genus 1 0 281 142577 species 530584 281 Prauserella marina 0 1 64 1 genus 2443 1847 8 0 Pseudonocardia no rank 6 0 2619320 1857 species 1 Pseudonocardia sp. HH130630-07 0 1690815 316 349 445576 1 Pseudonocardia sp. AL041005-10 0 species species 1096868 231 1 0 Pseudonocardia sp. EC080625-04 species Pseudonocardia sp. HH130629-09 0 1 1641402 353 307 1688404 1 0 Pseudonocardia sp. EC080610-09 species 1 0 Pseudonocardia sp. EC080619-01 1096856 301 species 1 Pseudonocardia dioxanivorans 0 240495 522 species genus 1 0 1851 244 1852 244 Saccharomonospora viridis 0 1 species 1 1 genus 165301 559 Lentzea 0 2 1586287 558 1 Lentzea guizhouensis 0 species genus Saccharopolyspora 0 2 1835 538 5 1 533 1836 Saccharopolyspora erythraea 0 1 species genus 0 Alloactinosynnema 2 674734 394 3 1 no rank 2636053 391 1 0 1653480 391 1 0 Alloactinosynnema sp. L-07 species order 29056 85006 0 Micrococcales 140 284 1 577468 59 1 0 no rank 1 0 59 2038 genus 2039 59 1 0 Tropheryma whipplei species family Cellulomonadaceae 0 6 1283 85016 6 1 genus 1277 1707 5 Cellulomonas 0 17 1 0 Cellulomonas fimi 1 527 1708 species species 11 193 0 Cellulomonas gilvus 1 1711 315 1 Cellulomonas flavigena 0 species 2620175 225 1 0 no rank 2003551 225 1 0 Cellulomonas sp. PSBB021 species family 709 145357 6 0 Dermacoccaceae 12 1 57499 214 Kytococcus 0 2 genus 1 4 1 0 Kytococcus sedentarius 210 1276 species 4 1 genus 220 57495 Dermacoccus 0 2 species 0 Dermacoccus nishinomiyaensis 1 1274 216 1 0 263 745364 genus 571913 263 Luteipulveratus mongoliensis 0 1 species 6 1 family 1357 85021 8 Intrasporangiaceae 0 53357 351 0 1 genus species 53358 351 1 Intrasporangium calvum 0 genus 2 0 Serinicoccus 265976 437 1 1 species 1758689 436 Serinicoccus sp. JLT9 0 1 genus 0 Janibacter 2 53457 235 1 1 0 Janibacter indicus 1 234 857417 species 1 4 267408 328 Arsenicicoccus 0 2 genus 2663846 324 0 1 no rank species 1658671 324 Arsenicicoccus sp. oral taxon 190 0 1 1 9 85020 2146 10 Dermabacteraceae 0 family Brachybacterium 0 6 43668 1704 genus 1 19 0 Brachybacterium sp. VR2415 1 311 2017485 species 43669 302 1 Brachybacterium faecium 0 species 2623841 302 1 0 no rank 1 0 Brachybacterium sp. P6-10-X1 1903186 302 species species 1331682 418 0 Brachybacterium ginsengisoli 1 species 2017484 352 1 0 Brachybacterium sp. VM2412 1 1 genus Devriesea 0 2 211 472568 species 1 0 Devriesea agamarum 210 472569 genus 222 36739 0 1 1630135 222 0 Dermabacter vaginalis 1 species 126 1 family 0 Microbacteriaceae 47 85023 9007 genus 1 0 447237 273 no rank 2626248 273 1 0 species 1 Frondihabitans sp. PAMC 28766 0 273 1795630 33886 329 3 0 Rathayibacter genus 1 2 species 145458 84 0 Rathayibacter toxicus 1 species 33888 243 0 Rathayibacter tritici 1 1 3 227 337004 0 Microcella 2 genus species 224 279828 1 0 Microcella alkaliphila 2 Leifsonia 0 576 110932 genus 1 8 0 Leifsonia xyli 1 1575 568 species 1 0 1434032 67 genus species 1159327 67 Pontimonas salivibrio 0 1 14 Microbacterium 0 33882 3532 genus 1 115 1 Microbacterium paludicola 0 300019 264 species no rank 2117 2609290 0 8 species 1906742 271 0 Microbacterium sp. BH-3-3-3 1 species 0 Microbacterium sp. CGR1 1 181 1696072 species 1 0 Microbacterium sp. str. 'China' 281 2103230 species 263 1938334 Microbacterium sp. TPU 3598 0 1 1795053 365 Microbacterium sp. PAMC 28756 0 1 species Microbacterium sp. No. 7 0 1 324 1714373 species species 1 0 Microbacterium sp. 1.5R 1916917 192 species 1 0 Microbacterium sp. XT11 240 367477 species 1 Microbacterium aurum 0 36805 393 0 Microbacterium hominis 1 294 162426 species 1 Microbacterium chocolatum 0 84292 127 species 0 Microbacterium testaceum 1 222 2033 species 0 1 101 1705353 genus 708131 101 0 Aurantimicrobium minutum 1 species 2 Agromyces 0 373 33877 genus 1 3 370 453304 0 Agromyces aureus 1 species 1 8 69578 757 0 Cryobacterium 3 genus 1 Cryobacterium arcticum 0 375 670052 species 2649013 374 0 1 no rank species 1978566 374 1 0 Cryobacterium sp. LW097 1 1 genus 278 1759331 2 0 Cnuibacter 1 Cnuibacter physcomitrellae 0 277 1619308 species Curtobacterium 0 4 2034 852 genus 1 19 species 69373 285 1 Curtobacterium pusillum 0 257496 548 2 0 no rank 1 0 Curtobacterium sp. BH-2-1-1 229 1905847 species species 319 1561023 1 0 Curtobacterium sp. MR_MD2014 234 1655488 3 0 no rank 234 1655489 0 3 clade 529883 234 Rhodoluna 0 3 genus 1 2 0 Rhodoluna lacicola 1 529884 196 species species 1 0 Candidatus Rhodoluna planktonica 535712 36 1 1 genus 232 518733 2 Microterricola 0 1 0 Microterricola viridarii 412690 231 species 1 36 1573 1050 6 Clavibacter 0 genus species 5 0 Clavibacter michiganensis 28447 1014 236 1 subspecies 196 31963 Clavibacter nebraskensis 0 1 31964 205 0 Clavibacter sepedonicus 1 subspecies 1 Clavibacter capsici 0 175 1874630 subspecies subspecies Clavibacter insidiosus 0 1 33014 202 1 461 1268 11137 0 Micrococcaceae 39 family 1073 32207 3 0 Rothia genus 1 1 2047 270 0 Rothia dentocariosa 1 species 1 Rothia mucilaginosa 0 802 43675 species genus 1868332 286 2 Neomicrococcus 0 3 1 556325 283 1 Neomicrococcus aestuarii 0 species 1742993 1040 4 Pseudarthrobacter 0 genus 1 13 species 307 361575 1 Pseudarthrobacter phenanthrenivorans 0 121292 324 0 Pseudarthrobacter sulfonivorans 1 species species 0 Pseudarthrobacter chlorophenolicus 1 85085 396 genus 1 0 71 1645 1646 71 0 Renibacterium salmoninarum 1 species genus 5202 1663 15 Arthrobacter 0 75 1 656366 658 1 0 Arthrobacter alpinus species species 37928 483 1 0 Arthrobacter crystallopoietes 235627 3986 0 12 no rank Arthrobacter sp. YN 0 1 2020486 283 species species 1771959 298 1 0 Arthrobacter sp. ATCC 21022 species 1652545 481 1 Arthrobacter sp. YC-RL1 0 species 296 290399 0 Arthrobacter sp. FB24 1 0 Arthrobacter sp. PAMC 25486 1 223 1494608 species 264 1806905 1 Arthrobacter sp. ZXY-2 0 species Arthrobacter sp. QXT-31 0 1 366 1357915 species 339 1690248 0 Arthrobacter sp. LS16 1 species species 1 0 Arthrobacter sp. PGP41 2079227 289 1 0 Arthrobacter sp. Rue61a 329 1118963 species Arthrobacter sp. ERGS1:01 0 1 356 1704044 species species 1 Arthrobacter sp. U41 0 462 1849032 genus 2078575 197 0 1 1618207 197 1 Arthrobacter sp. IHBB 11108 0 species genus 2 Glutamicibacter 0 1742989 563 1 1 species 562 256701 1 0 Glutamicibacter arilaitensis 871 57493 Kocuria 0 4 genus 1 14 71999 229 1 Kocuria palustris 0 species 446860 343 1 0 Kocuria flava species species 0 Kocuria rhizophila 1 72000 285 1 3 526 596707 2 0 Sinomonas genus species 523 37927 0 Sinomonas atrocyanea 1 3 1 genus 391 1269 2 Micrococcus 0 1270 388 Micrococcus luteus 0 1 species 1 2 2 Paenarthrobacter 0 1742992 456 genus species 454 43663 1 0 Paenarthrobacter aurescens family 3 Jonesiaceae 0 95 85022 5 1 Jonesia 0 2 90 43673 genus 1 3 species 0 Jonesia denitrificans 1 87 43674 43 1 family 0 Promicromonosporaceae 9 85017 1605 3 Cellulosimicrobium 0 531 157920 genus 1 2 280 1710 0 Cellulosimicrobium cellulans 1 species 1 0 2624466 249 no rank 249 1980001 0 Cellulosimicrobium sp. TH-20 1 species 1 1 genus 375 186188 Xylanimonas 0 2 Xylanimonas cellulosilytica 0 1 374 186189 species 1 6 Isoptericola 0 3 254250 656 genus species Isoptericola dokdonensis 0 1 372663 360 0 Isoptericola variabilis 1 290 139208 species 85018 143 2 0 family genus 2 0 Dermatophilus 1862 143 4 1 species 139 1863 1 Dermatophilus congolensis 0 0 2 332 145360 family 2 Sanguibacter 0 60919 332 genus 1 8 324 60920 Sanguibacter keddieii 0 1 species 1 1 family 272 125316 3 0 Beutenbergiaceae genus Beutenbergia 0 2 84756 271 5 1 species 266 84757 1 0 Beutenbergia cavernae 6 1 family 0 Brevibacteriaceae 3 85019 627 1 24 2 0 Brevibacterium 1696 621 genus species 597 1703 Brevibacterium linens 0 1 1 112 85011 41591 82 0 Streptomycetales order 253 1 family 41479 2062 Streptomycetaceae 0 81 genus 75 0 Streptomyces 1883 38828 1117 1 0 Streptomyces scabiei 1 1930 430 species species Streptomyces pactum 0 1 875 68249 species 408015 512 0 Streptomyces xiamenensis 1 species 67267 495 1 Streptomyces alboflavus 0 species 29303 567 0 Streptomyces cattleya 1 347 1950 1 Streptomyces peucetius 0 species Streptomyces vietnamensis 0 1 525 362257 species species 1 Streptomyces noursei 0 448 1971 1 Streptomyces lincolnensis 0 1915 549 species species 1 Streptomyces lividans 0 1916 512 species 563 68280 0 Streptomyces violaceusniger 1 species 68192 552 1 0 Streptomyces cyaneogriseus species Streptomyces xinghaiensis 0 1 1038928 372 species 407 285473 1 0 Streptomyces rubrolavendulae species 1642299 503 1 0 Streptomyces alfalfae 1 Streptomyces sp. XZHG99 0 2049881 440 species 92644 655 1 Streptomyces malaysiensis 0 species species 1 Streptomyces niveus 0 343 193462 species 1282 47763 1 0 Streptomyces lydicus 0 Streptomyces hygroscopicus 1 1912 1177 species species 1 0 Streptomyces albus 1888 907 1477431 1051 2 0 species group 0 Streptomyces sampsonii 1 488 42239 species 563 1902 0 Streptomyces coelicolor 1 species 1 Streptomyces pristinaespiralis 0 38300 440 species 415 1783515 1 Streptomyces sp. S10(2016) 0 species species 754 68214 1 Streptomyces griseochromogenes 0 species 1969 459 1 Streptomyces chartreusis 0 388 146923 0 Streptomyces parvulus 1 species species 0 Streptomyces leeuwenhoekii 1 423 1437453 species Streptomyces violaceoruber 0 1 367 1935 species 0 Streptomyces reticuli 1 1926 458 0 Streptomyces albireticuli 1 1940 361 species 33903 353 Streptomyces avermitilis 0 1 species 0 Streptomyces albulus 1 68570 470 species 1616117 372 1 Streptomyces formicae 0 species species Streptomyces autolyticus 0 1 629 75293 species 500 164348 Streptomyces puniciscabiei 0 1 species 1 Streptomyces collinus 0 407 42684 species 1355015 358 Streptomyces pluripotens 0 1 species 0 Streptomyces pratensis 1 289 1169025 species 751 379067 Streptomyces bingchenggensis 0 1 524 553510 0 Streptomyces gilvosporeus 1 species 493 1901 1 0 Streptomyces clavuligerus species 435 1889 1 0 Streptomyces ambofaciens species no rank 0 24 2593676 11407 1 0 Streptomyces sp. CdTB01 537 1725411 species 464 1812480 Streptomyces sp. fd1-xmd 0 1 species 1 0 Streptomyces sp. CNQ-509 444103 423 species species 1964449 430 Streptomyces sp. 3211 0 1 species 1661694 442 Streptomyces sp. Tue 6075 0 1 species 1751294 417 1 Streptomyces sp. 4F 0 species 1 Streptomyces sp. M56 0 683 1495638 species 0 Streptomyces sp. CMB-StM0423 1 2059884 704 Streptomyces sp. RTd22 0 1 585 1841249 species 0 Streptomyces sp. SAT1 1 1849967 404 species 463 1972846 0 Streptomyces sp. Sge12 1 species species 1 0 Streptomyces sp. CFMR 7 1649184 467 Streptomyces sp. PAMC 26508 0 1 343 1265601 species species 0 Streptomyces sp. CLI2509 1 348 1984801 0 Streptomyces sp. S8 1 379 1837283 species species 2135430 642 Streptomyces sp. P3 0 1 species 0 Streptomyces sp. WAC00288 1 2094021 519 465 206662 Streptomyces sp. FR-008 0 1 species 1262452 542 1 0 Streptomyces sp. 769 species Streptomyces sp. MOE7 0 1 382 1961713 species species 592 465541 1 Streptomyces sp. Mg1 0 1 0 Streptomyces sp. TN58 344 234612 species 529 1561022 1 0 Streptomyces sp. CCM_MD2014 species 0 Streptomyces sp. SirexAA-E 1 862751 303 species 0 Streptomyces glaucescens 1 493 1907 species 68202 322 1 Streptomyces fulvissimus 0 species species group 895 629295 0 2 species subgroup 506 1482596 0 1 506 1911 1 0 Streptomyces griseus species species subgroup 1482558 389 1 0 1 Streptomyces globisporus 0 389 1908 species 1914 402 Streptomyces lavendulae 0 1 species species 54571 1034 0 Streptomyces venezuelae 1 0 Kitasatospora 5 2063 2398 genus 1 18 species 1 0 Kitasatospora setae 631 2066 species 383 68173 1 Kitasatospora albolonga 0 no rank 1 0 2633591 768 1 Kitasatospora sp. MMS16-BH015 0 2018025 768 species 598 1894 0 Kitasatospora aureofaciens 1 species Streptosporangiales 0 16 85012 4433 order 1 19 22 1 family 83676 1946 7 0 Nocardiopsaceae 1 1 genus 83677 307 Thermobifida 0 2 Thermobifida fusca 0 1 306 2021 species genus 1617 2013 Nocardiopsis 0 4 16 1 2014 708 Nocardiopsis dassonvillei 0 1 species species 280236 453 Nocardiopsis gilva 0 1 species 53437 440 Nocardiopsis alba 0 1 19 1 family 5 Streptosporangiaceae 0 1706 2004 0 Streptosporangium 2 2000 688 genus 1 12 2001 676 Streptosporangium roseum 0 1 species 1 11 0 Nonomuraea 2 999 83681 genus no rank 2593643 988 1 0 0 Nonomuraea sp. ATCC 55076 1 1909395 988 species family 3 Thermomonosporaceae 0 2012 762 6 1 98 1 genus 756 2019 2 0 Thermomonospora species 1 0 Thermomonospora curvata 658 2020 order 0 2 622450 301 0 2 301 622451 family 2 0 Actinopolyspora 301 1849 genus 1 2 species 299 414996 1 0 Actinopolyspora erythraea order 0 3 622452 408 family 83778 408 0 Kineosporiaceae 3 5 1 403 33981 Kineococcus 0 2 genus 1 2 species 1 Kineococcus radiotolerans 0 401 131568 1 0 166 52018 no rank 166 1650658 1 0 Actinobacteria bacterium IMCC26256 species 1 3 0 Glycomycetales 4 505 85014 order 502 85034 3 Glycomycetaceae 0 family 1 12 genus 0 Stackebrandtia 2 283810 490 4 1 species 1 Stackebrandtia nassauensis 0 283811 486 1643682 1549 0 Geodermatophilales 8 order 1 11 192 1 family 0 Geodermatophilaceae 7 1538 85030 26 1 genus 2 Geodermatophilus 0 1860 434 species Geodermatophilus obscurus 0 1 1861 408 25 1 genus 38501 396 Blastococcus 0 2 138336 371 Blastococcus saxobsidens 0 1 species 28 1 genus Modestobacter 0 2 88138 516 488 477641 1 Modestobacter marinus 0 species 1 58 Bifidobacteriales 0 24 124386 85004 order 1 2434 Bifidobacteriaceae 0 23 31953 124328 family genus 196082 305 1 0 1 0 Parascardovia denticolens 78258 305 species 2701 645 1 0 genus species 2702 645 1 0 Gardnerella vaginalis 120752 1678 0 Bifidobacterium 19 genus 1 636 species 244 638619 1 0 Bifidobacterium actinocoloniiforme 1689 568 Bifidobacterium dentium 0 1 species 1 0 Bifidobacterium pseudocatenulatum 2548 28026 species species 1685 6663 1 Bifidobacterium breve 0 species 1 0 Bifidobacterium animalis 28025 484 1 Bifidobacterium indicum 0 264 1691 species species 0 Bifidobacterium choerinum 1 35760 587 species Bifidobacterium coryneforme 0 1 295 1687 species 313 1684 Bifidobacterium asteroides 0 1 974 1 species 3130 1686 0 Bifidobacterium catenulatum 2 subspecies Bifidobacterium kashiwanohense 0 1 630129 2156 1 0 Bifidobacterium angulatum 1683 1044 species species 1681 14897 Bifidobacterium bifidum 0 1 1 0 Bifidobacterium thermophilum 33905 593 species 42996 216816 Bifidobacterium longum 0 1 species species 1 0 Bifidobacterium scardovii 854 158787 766 1694 1 0 Bifidobacterium pseudolongum species species 1 0 Bifidobacterium adolescentis 43870 1680 1 0 192 196081 genus Scardovia inopinata 0 1 78259 192 species 2 0 1859062 195 no rank 1 1 195 262406 0 Thermobaculum 2 genus 194 166501 Thermobaculum terrenum 0 1 species 249 67819 0 5 phylum 1 1 5 Fimbriimonadia 0 249 1663419 class 1 1 4 0 Fimbriimonadales 248 1663425 order 3 1 family 3 Fimbriimonadaceae 0 1663426 247 1 1 Fimbriimonas 0 2 1005038 244 genus species Fimbriimonas ginsengisoli 0 1 243 1005039 phylum 1895 200930 6 0 1 1 68337 1895 Deferribacteres 0 6 class 1 4 191393 1894 5 Deferribacterales 0 order 1890 191394 4 0 family genus 1 0 117999 697 1 Denitrovibrio acetiphilus 0 697 118000 species 0 1 504 545865 genus species 1 0 Calditerrivibrio nitroreducens 477976 504 0 1 487 53572 genus Deferribacter desulfuricans 0 1 487 197162 species 2351 202 0 1 genus 2352 202 1 Flexistipes sinusarabici 0 species 22 0 2687 200783 phylum 187857 2687 0 Aquificae 22 class 1 1 0 4 335 1485951 order 558314 335 0 4 family 1 1 0 Desulfurobacterium 2 261 64159 genus species 1 Desulfurobacterium thermolithotrophum 0 64160 260 171868 74 0 Thermovibrio 2 genus 1 1 228745 73 0 Thermovibrio ammonificans 1 species 8 1 order 2351 32069 17 Aquificales 0 8 1 family 224027 1152 5 Hydrogenothermaceae 0 genus 182899 372 0 1 372 309805 Persephonella marina 0 1 species 212790 772 0 Sulfurihydrogenibium 3 genus 1 1 no rank 2619248 362 0 1 species 1 0 Sulfurihydrogenibium sp. YO3AOP1 362 436114 species 409 309806 Sulfurihydrogenibium azorense 0 1 family 0 10 64898 1010 593 168657 6 0 Hydrogenobaculum genus 1 14 5 0 2622382 579 no rank 0 Hydrogenobaculum sp. 3684 1 547143 111 species species 380749 135 1 0 Hydrogenobaculum sp. Y04AAS1 0 Hydrogenobaculum sp. HO 1 111 547144 species 111 547146 1 Hydrogenobaculum sp. SN 0 species species 1 0 Hydrogenobaculum sp. SHO 111 547145 genus 237 75905 0 2 species 1 Thermocrinis albus 0 136094 80 Thermocrinis ruber 0 1 157 75906 species genus 2713 105 1 0 species 1 Aquifex aeolicus 0 105 63363 genus 0 1 939 75 species 75 940 Hydrogenobacter thermophilus 0 1 1 0 181 90150 no rank genus 0 1 181 412592 species 1 0 Thermosulfidibacter takaii 181 412593 clade 0 2 205 2498710 phylum 0 2 67814 205 2 0 205 693071 class 693072 205 2 0 order 205 693073 2 0 family 2 1 genus 205 693074 2 Caldisericum 0 Caldisericum exile 0 1 203 693075 species 1224 779337 1959 Proteobacteria 0 phylum 1 227 6 0 829 1807140 class 6 Acidithiobacillales 0 225057 829 order 1 8 821 225058 0 Acidithiobacillaceae 5 family 1 4 33 1 genus 817 119977 0 Acidithiobacillus 4 species 920 233 1 Acidithiobacillus ferrooxidans 0 species 33059 316 1 0 Acidithiobacillus caldus species 1 0 Acidithiobacillus ferrivorans 235 160808 311 1 class 145858 28216 346 Betaproteobacteria 0 80840 115833 0 Burkholderiales 231 order 1 1100 family 41 Alcaligenaceae 0 506 21159 285 1 10 1 genus 0 Alcaligenes 2 507 819 809 511 1 Alcaligenes faecalis 0 species genus 693 1921582 2 0 Orrella 3 1 species 0 Orrella dioscoreae 1 1851544 690 genus 1 0 294 1100891 294 643674 1 Paenalcaligenes hominis 0 species 6 Achromobacter 0 222 7370 genus 1 242 1 0 Achromobacter spanius 217203 1354 species 1601 32002 0 Achromobacter denitrificans 1 species species 217204 686 Achromobacter insolitus 0 1 species 0 Achromobacter xylosoxidans 1 85698 2674 no rank 813 2626865 1 0 species 813 1758194 1 Achromobacter sp. AONIH1 0 genus 8802 517 17 0 Bordetella 284 1 Bordetella pseudohinzii 0 1 447 1331258 species 520 412 Bordetella pertussis 0 1 species species 544 463040 1 Bordetella genomosp. 13 0 species Bordetella genomosp. 8 0 1 771 1416806 species 521 260 Bordetella avium 0 1 species Bordetella trematum 0 1 123899 585 species 538 1416803 Bordetella genomosp. 9 0 1 species 519 520 1 0 Bordetella parapertussis species 1 0 Bordetella bronchiseptica 518 1031 1 0 Bordetella flabilis 539 463014 species no rank 1 0 418 2630031 1697043 418 1 Bordetella sp. H567 0 species 238 35814 0 Bordetella holmesii 1 species Bordetella petrii 0 1 421 94624 species 463025 702 1 0 Bordetella bronchialis species species 1 0 Bordetella genomosp. 6 528 463024 0 Bordetella hinzii 1 103855 564 species 29574 468 0 2 genus species Taylorella equigenitalis 0 1 29575 330 1 0 Taylorella asinigenitalis 138 84590 species genus 392 1472344 Basilea 0 2 4 1 species 1 0 Basilea psittacipulmonis 1472345 388 genus 0 1 90243 330 species 90245 330 1 Oligella urethralis 0 genus 766 290425 0 Advenella 3 2 1 461 310575 Advenella kashmirensis 0 1 species species Advenella mimigardefordensis 0 1 303 302406 1 1 genus 305976 306 2 0 Pusillimonas 1 0 2640016 305 no rank species 1007105 305 1 0 Pusillimonas sp. T7-7 genus 2 0 Castellaniella 634 359336 28 1 species 606 75697 1 Castellaniella defragrans 0 96 1 family 14886 75682 0 Oxalobacteraceae 28 1 0 507 846 genus species 0 Oxalobacter formigenes 1 507 847 0 Herminiimonas 3 730 303379 genus 1 32 species 1809410 304 0 Herminiimonas arsenitoxidans 1 species 394 204773 1 0 Herminiimonas arsenicoxydans 2765 202907 Collimonas 0 4 genus 1 43 767 279113 1 0 Collimonas pratensis species 158899 774 1 Collimonas fungivorans 0 species 0 Collimonas arenae 1 279058 1181 species 1 32 3691 29580 0 Janthinobacterium 7 genus species 0 Janthinobacterium svalbardensis 1 903 368607 2143 2610881 0 4 no rank species 1644131 643 Janthinobacterium sp. 1_2014MBL_MicDiv 0 1 1 0 Janthinobacterium sp. B9-8 1236179 719 species species 307 375286 0 Janthinobacterium sp. Marseille 1 1938606 474 Janthinobacterium sp. LM6 0 1 species 613 55508 0 Janthinobacterium agaricidamnosum 1 species genus 6 0 Herbaspirillum 963 3555 83 1 species 964 796 0 Herbaspirillum seropedicae 1 species 80842 507 1 0 Herbaspirillum rubrisubalbicans species 92645 617 Herbaspirillum frisingense 0 1 765 2624150 1 0 no rank 2025949 765 1 0 Herbaspirillum sp. meg3 species species Herbaspirillum hiltneri 0 1 787 341045 genus 149698 3542 6 0 Massilia 79 1 species 2072590 769 Massilia sp. ZMN-3 0 1 species 549 2045208 0 Massilia sp. B2 1 2 0 2609279 1475 no rank species 1 0 Massilia sp. WG5 692 1707785 0 Massilia sp. NR 4-1 1 1678028 783 species 1141883 670 0 Massilia putida 1 species 248 1 family Burkholderiaceae 0 84 45495 119060 139 1 genus 12 Paraburkholderia 0 1822464 6360 species 1 0 Paraburkholderia phytofirmans 261302 450 species 0 Paraburkholderia caribensis 1 772 75105 791 148447 0 Paraburkholderia phymatum 1 species Paraburkholderia hospita 0 1 484 169430 species 1 Paraburkholderia fungorum 0 134537 490 species species 1 Paraburkholderia sprentiae 0 525 948107 1 0 545 2615204 no rank Paraburkholderia sp. SOS3 0 1 545 1926494 species species 512 252970 0 Paraburkholderia phenoliruptrix 1 1 0 Paraburkholderia aromaticivorans 647 2026199 species species 36873 525 1 Paraburkholderia xenovorans 0 311230 480 1 0 Paraburkholderia terrae species 0 Pandoraea 10 93217 4196 genus 1 109 Pandoraea sputorum 0 1 93222 563 species 511 93220 Pandoraea pnomenusa 0 1 species Pandoraea vervacti 0 1 387 656178 species Pandoraea oxalativorans 0 1 573737 456 species 1 Pandoraea faecigallinarum 0 656179 486 species 445709 351 1 0 Pandoraea thiooxydans species 448 93218 Pandoraea apista 0 1 species Pandoraea pulmonicola 0 1 93221 441 species 1 0 Pandoraea norimbergensis 93219 444 species 1 195 Cupriavidus 0 9 106589 6578 genus 1 0 Cupriavidus basilensis 838 68895 species 1 0 Cupriavidus pinatubonensis 248026 475 species species 1 Cupriavidus metallidurans 0 119219 801 no rank 0 2 2640874 1857 1389192 1032 1 0 Cupriavidus sp. USMAHM13 species species 876364 825 1 0 Cupriavidus sp. USMAA2-4 Cupriavidus sp. USMAA1020 0 1 367825 870 species 106590 984 1 0 Cupriavidus necator species 82541 558 Cupriavidus gilardii 0 1 species genus 0 1 455 1827195 species 455 758793 0 Burkholderia sp. RPE64 1 genus 0 1 221 2571159 1 Paraburkholderia rhizoxinica 0 221 412963 species 1016 1 genus 32008 21693 Burkholderia 0 41 no rank 0 11 2613784 4676 species Burkholderia sp. HB1 0 1 507 1678678 599 758796 1 0 Burkholderia sp. RPE67 species species 1 Burkholderia sp. CCGE1001 0 412 640510 Burkholderia sp. PAMC 26561 0 1 1795043 470 species species 399 1740163 1 0 Burkholderia sp. Bp7605 species 273 1468409 1 Burkholderia sp. 2002721687 0 1097668 586 1 Burkholderia sp. YI23 0 species 1 Burkholderia sp. Bp5365 0 1740162 296 species species 1 0 Burkholderia sp. CCGE1003 640512 403 433 1795874 0 Burkholderia sp. PAMC 28687 1 species 298 416344 Burkholderia sp. KJ006 0 1 species 337 873 0 Burkholderia glumae 1 species species 1 Burkholderia plantarii 0 557 41899 species group 7 0 2924 111527 0 Burkholderia pseudomallei 1 28450 805 species species Burkholderia oklahomensis 0 1 342113 457 species 0 Burkholderia mallei 1 13373 195 1637831 225 0 Burkholderia sp. MSMB617WGS 1 species species Burkholderia sp. MSMB0852 0 1 296 1637841 species 1 0 Burkholderia sp. MSMB0266 1637837 270 species Burkholderia thailandensis 0 1 676 57975 0 19 87882 10591 species group 0 Burkholderia pseudomultivorans 1 1207504 401 species 295 488446 1 0 Burkholderia latens species 482957 451 0 Burkholderia lata 1 species Burkholderia territorii 0 1 170 1503055 species 0 Burkholderia seminalis 1 488731 295 species species 1 0 Burkholderia cenocepacia 95486 1597 species 1 [Pseudomonas] mesoacidophila 0 265293 568 species 1 0 Burkholderia ambifaria 152480 426 species Burkholderia dolosa 0 1 296 152500 species 208 488732 Burkholderia diffusa 0 1 species 292 1631 Burkholderia cepacia 0 1 species 1 Burkholderia ubonensis 0 1179 101571 1503054 262 1 Burkholderia stagnalis 0 species species Burkholderia metallica 0 1 488729 230 species 0 Burkholderia vietnamiensis 1 60552 584 species 281 488447 0 Burkholderia contaminans 1 species 1 0 Burkholderia multivorans 1027 87883 480 95485 1 Burkholderia stabilis 0 species 60550 210 1 0 Burkholderia pyrrocinia species species 1056 28095 Burkholderia gladioli 0 1 82 1 genus Ralstonia 0 5 5212 48736 species 105219 770 1 Ralstonia mannitolilytica 0 1 0 Ralstonia pickettii 329 1356 species species 861 190721 Ralstonia insidiosa 0 1 species 305 2143 Ralstonia solanacearum 0 1 532 44013 4 Polynucleobacter 0 genus 1 2 1835254 154 1 0 Polynucleobacter duraquae species species 114 576610 0 Polynucleobacter necessarius 1 262 576611 Polynucleobacter asymbioticus 0 1 species no rank 1729 80841 0 2 species 1 0 Burkholderiales bacterium GJ-E10 426 1469502 0 Burkholderiales bacterium YL45 1 1834205 1303 species 522 1 family 58 Comamonadaceae 0 25485 80864 genus Diaphorobacter 0 2 545 238749 4 1 species 1 Diaphorobacter polyhydroxybutyrativorans 0 1546149 541 25 1 genus 47420 1886 4 Hydrogenophaga 0 0 Hydrogenophaga crassostreae 1 1763535 651 species no rank 0 2 1210 2610897 640 795665 1 0 Hydrogenophaga sp. PBC species 1842537 570 0 Hydrogenophaga sp. RAC07 1 species 1 15 3 Polaromonas 0 1203 52972 genus 216465 583 1 Polaromonas naphthalenivorans 0 species 1 0 605 2638319 no rank 296591 605 1 Polaromonas sp. JS666 0 species 7 1 genus 174951 1070 2 0 Ramlibacter species 1063 94132 Ramlibacter tataouinensis 0 1 1 2 219181 1143 3 0 Ottowia genus Ottowia sp. KADR8-3 0 1 2109914 624 species 0 1 517 2645081 no rank species 1658672 517 1 0 Ottowia sp. oral taxon 894 genus 3 0 Limnohabitans 460 665874 5 1 no rank 0 2 2626134 455 species 1 0 Limnohabitans sp. 63ED37-2 1678128 274 0 Limnohabitans sp. 103DPR2 1 1678129 181 species genus 2 Melaminivora 0 471 1649468 11 1 460 2641902 0 1 no rank 460 2109913 0 Melaminivora sp. SC2-9 1 species Candidatus Symbiobacter 0 2 335 1436289 genus 1 4 species 331 1436290 1 0 Candidatus Symbiobacter mobilis genus 28065 1852 0 Rhodoferax 5 11 1 81479 266 1 0 Rhodoferax antarcticus species species 0 Rhodoferax saidenbachensis 1 1484693 639 species Rhodoferax ferrireducens 0 1 192843 376 species 1842727 560 Rhodoferax koreense 0 1 61 1 genus 5 Variovorax 0 34072 3466 1723 34073 1 Variovorax paradoxus 0 species species 436515 646 1 Variovorax boronicumulans 0 no rank 1036 663243 2 0 1795631 329 1 0 Variovorax sp. PAMC 28711 species species 2126319 707 0 Variovorax sp. PMC12 1 Alicycliphilus 0 2 201096 841 genus 1 2 Alicycliphilus denitrificans 0 1 179636 839 species Delftia 0 5 80865 3099 genus 1 76 1 0 Delftia acidovorans 756 80866 species no rank 0 2 2613839 1522 Delftia sp. HK171 0 1 1920191 750 species species 1 Delftia sp. Cs1-4 0 742013 772 species 1 Delftia tsuruhatensis 0 180282 745 263 1 genus 12916 4452 Acidovorax 0 9 721785 527 Acidovorax ebreus 0 1 species 0 Acidovorax citrulli 1 586 80869 species 1 Acidovorax avenae 0 80867 617 species no rank 4 0 2684926 2100 species 1842533 533 1 0 Acidovorax sp. RAC01 1 Acidovorax sp. JS42 0 232721 489 species 630 358220 Acidovorax sp. KKS102 0 1 species 1858609 448 1 Acidovorax sp. T1 0 species 359 553814 1 Acidovorax sp. NA3 0 species genus 551 2678886 1 0 2116657 551 1 0 Melaminivora sp. SC2-7 species 1 46 2245 283 0 Comamonas 4 genus 0 Comamonas testosteroni 1 1109 285 species 512 1082851 1 Comamonas serinivorans 0 species species 0 Comamonas kerstersii 1 225992 578 2 0 2490452 586 genus 1 0 Comamonadaceae bacterium B1 1458426 290 species species 1 Comamonadaceae bacterium A1 0 1458425 296 348 352450 2 0 Simplicispira genus 1 3 345 2109915 Simplicispira sp. SC1-8 0 1 species genus 364316 410 1 0 species 1 Verminephrobacter eiseniae 0 410 364317 5979 224471 17 0 no rank genus 691 212743 Rhizobacter 0 2 43 1 0 Rhizobacter gummiphilus 1 648 946333 species 65047 635 0 Mitsuaria 2 genus 1 18 0 1 2648776 617 no rank 1 Mitsuaria sp. 7 0 617 1658665 species species 413882 528 1 [Polyangium] brachysporum 0 genus 0 Thiomonas 2 32012 790 6 1 species 1 Thiomonas intermedia 0 926 784 12 1 genus 2 Leptothrix 0 665 88 653 34029 0 Leptothrix cholodnii 1 species genus 0 Paucibacter 2 318147 643 9 1 no rank 0 1 2642959 634 species 1768242 634 1 0 Paucibacter sp. KCTC 42545 genus Rubrivivax 0 2 732 28067 13 1 species 1 Rubrivivax gelatinosus 0 719 28068 genus 773 93681 2 0 Roseateles 19 1 species 754 76731 1 0 Roseateles depolymerans genus 522 316612 Methylibium 0 2 19 1 species 1 Methylibium petroleiphilum 0 503 105560 2 0 33809 558 no rank species 431 1904640 1 Betaproteobacteria bacterium GR16-43 0 127 543913 1 beta proteobacterium CB 0 species Neisseriales 0 37 206351 12546 order 1 136 23 0 Neisseriaceae 481 7334 family 1 76 genus Snodgrassella 0 2 391 1193515 4 1 species 1196083 387 Snodgrassella alvi 0 1 572 59 Vitreoscilla 0 3 genus 1 7 no rank 0 1 2627922 159 species Vitreoscilla sp. C1 0 1 96942 159 1 0 Vitreoscilla filiformis 406 63 species 83 1 genus 482 5256 0 Neisseria 12 species 1 0 Neisseria elongata 237 495 486 444 1 Neisseria lactamica 0 species 336 28091 1 0 Neisseria weaveri species 1 0 Neisseria sicca 490 341 species 485 210 Neisseria gonorrhoeae 0 1 species no rank 2 0 688 2623750 species 1 0 Neisseria sp. 10022 254 1853276 655307 434 1 Neisseria sp. KEM232 0 species species 326523 400 0 Neisseria zoodegmatis 1 species 1853278 699 1 Neisseria sp. 10023 0 1433 487 1 Neisseria meningitidis 0 species 385 488 Neisseria mucosa 0 1 species no rank 0 1 386 421605 species 386 2052837 Neisseriaceae bacterium DSM 100970 0 1 genus 2 Eikenella 0 538 410 4 1 539 406 1 Eikenella corrodens 0 species 2 Simonsiella 0 71 243 genus 1 3 species Simonsiella muelleri 0 1 72 240 1 54 13 0 Chromobacteriaceae 5076 1499392 family 90153 2248 4 0 no rank 4 Chromobacterium 0 2248 535 genus 1 39 1108595 883 0 Chromobacterium vaccinii 1 species species Chromobacterium violaceum 0 1 536 704 2641838 622 1 0 no rank 2059672 622 1 Chromobacterium sp. ATCC 53434 0 species genus 696 187 Aquaspirillum 0 2 1 1 no rank 2620219 695 0 1 1 0 Aquaspirillum sp. LM1 695 1938604 species 4 1 genus 2 0 Pseudogulbenkiania 568394 860 no rank 0 1 856 2642558 1 0 Pseudogulbenkiania sp. NH8B 856 748280 species 658 168470 0 Laribacter 2 genus 1 7 651 168471 1 Laribacter hongkongensis 0 species 8 1 genus Jeongeupia 0 2 560 885864 no rank 2619593 552 1 0 552 1906741 1 Jeongeupia sp. USM3 0 species 0 11 119066 1251 no rank 1301080 8 1 0 genus 8 1160784 Candidatus Nasuia deltocephalinicola 0 1 species genus 525 327159 2 Candidatus Accumulibacter 0 8 1 327160 517 Candidatus Accumulibacter phosphatis 0 1 species 4 189384 0 1 genus 1 0 Candidatus Tremblaya princeps 189385 4 species 1 23 611 33055 Kinetoplastibacterium 0 6 genus species 0 Candidatus Kinetoplastibacterium desouzaii 1 172 994692 species 120 994695 0 Candidatus Kinetoplastibacterium galatii 1 species 994696 52 1 Candidatus Kinetoplastibacterium oncopeltii 0 species 1 0 Kinetoplastibacterium blastocrithidii 233181 186 species 58 33056 1 Candidatus Kinetoplastibacterium crithidii 0 genus 103 1381133 0 1 0 Candidatus Profftella armatura 1 103 669502 species 1 36 0 Nitrosomonadales 42 32003 7904 order family 2772226 591 0 4 genus 1778653 349 Sulfuriferula 0 2 1 1 348 2637784 1 0 no rank species Sulfuriferula sp. AH1 0 1 1985873 348 genus 242 935200 2 0 Sulfuricella 5 1 1 0 Sulfuricella denitrificans 649841 237 species 16 1 family 2008790 346 Thiobacillaceae 0 3 0 Thiobacillus 2 330 919 genus 1 8 species 322 36861 1 Thiobacillus denitrificans 0 1 6 12 0 Methylophilaceae 2731 32011 family genus Methylophilus 0 2 268 16 1 1 no rank 0 1 2630143 267 267 1662285 1 0 Methylophilus sp. TWE2 species Methylobacillus 0 2 404 261 genus 1 1 species 1 Methylobacillus flagellatus 0 260 405 950 81682 Methylovorus 0 3 genus 1 2 483 2634027 1 0 no rank 483 887061 1 0 Methylovorus sp. MP688 species species 266009 465 1 Methylovorus glucosotrophus 0 762 359407 0 2 genus 1 Methylotenera mobilis 0 359408 153 species 1055487 609 1 Methylotenera versatilis 0 species genus 0 2 484 1679002 species 1 0 Candidatus Methylopumilus planktonicus 1581557 290 species 1581680 194 0 Candidatus Methylopumilus turicensis 1 32 1 family 2008793 1269 5 0 Sterolibacteriaceae 1 26 549 378210 0 Methyloversatilis 2 genus 523 2639971 1 0 no rank 1 0 Methyloversatilis sp. RAC08 1842540 523 species 1 6 688 1054211 Sulfuritalea 0 2 genus species 748811 682 Sulfuritalea hydrogenivorans 0 1 1 7 2175 206379 12 Nitrosomonadaceae 0 family 7 Nitrosomonas 0 914 1393 genus 1 4 species 44577 194 1 0 Nitrosomonas ureae 325 916 Nitrosomonas eutropha 0 1 species species 1 0 Nitrosomonas communis 44574 199 no rank 309 2609265 0 2 species 153948 193 Nitrosomonas sp. AL212 0 1 species 1 Nitrosomonas sp. Is79A3 0 116 261292 915 362 Nitrosomonas europaea 0 1 species 775 35798 Nitrosospira 0 4 genus 1 7 species 172 1288494 1 Nitrosospira lacus 0 Nitrosospira multiformis 0 1 1231 328 species 1 Nitrosospira briensis 0 35799 268 species family 756 90627 Gallionellaceae 0 5 19 1 genus 314343 363 2 Sideroxydans 0 3 1 species Sideroxydans lithotrophicus 0 1 63745 360 96 374 2 0 Gallionella genus 1 11 species 0 Gallionella capsiferriformans 1 370405 363 89 1 order 7455 206389 0 Rhodocyclales 22 1704 75787 6 Rhodocyclaceae 0 family 1 62 412 75788 1 0 no rank species 412 1898103 0 Rhodocyclaceae bacterium 1 1 16 0 Azospira 2 146937 830 genus species 1 Azospira oryzae 0 146939 814 2 0 Aromatoleum 551759 400 genus 1 11 species 551760 389 0 Aromatoleum aromaticum 1 159 1 family 12 Zoogloeaceae 0 4955 2008794 1 66 12960 2151 Azoarcus 0 5 genus 1 0 Azoarcus sp. SY39 2067960 424 species 418699 545 0 Azoarcus olearius 1 species 0 2 1116 2629479 no rank 648 748247 0 Azoarcus sp. KH32C 1 species 198107 468 1 0 Azoarcus sp. CIB species genus 2645 33057 6 0 Thauera 51 1 0 2 2609274 1179 no rank species 1 0 Thauera sp. K11 640 2005884 species 1 0 Thauera sp. MZ1T 85643 539 species 1 Thauera humireducens 0 1134435 580 96773 416 0 Thauera chlorobenzoica 1 species species 1 0 Thauera aromatica 59405 419 3 0 Azonexaceae 2008795 707 family 1 11 1 16 73029 696 2 Dechloromonas 0 genus species 680 259537 0 Dechloromonas aromatica 1 497 1 class 152203 28211 Alphaproteobacteria 0 539 0 2 308 2800059 order family 308 2800061 2 0 1 1 genus 308 74317 2 0 Maricaulis species 1 0 Maricaulis maris 307 74318 54526 785 6 0 order 0 1 2045213 220 genus species 1925548 220 1 0 Candidatus Fonsibacter ubiquis 565 1655514 5 Pelagibacteraceae 0 family 1 2 no rank 0 2 243 1655516 species 125 859653 0 alpha proteobacterium HIMB5 1 species alpha proteobacterium HIMB59 0 1 118 744985 2 0 198251 320 genus no rank 1 0 2647897 124 1 Candidatus Pelagibacter sp. IMCC9063 0 124 1002672 species species 196 198252 Candidatus Pelagibacter ubique 0 1 order 2800060 742 0 6 10 1 family 742 69657 0 Hyphomonadaceae 6 85 443 3 Hyphomonas 0 genus 1 17 no rank 168 2630699 1 0 Hyphomonas sp. Mor2 0 1 168 1906738 species species 1 Hyphomonas neptunium 0 258 81032 2 Hirschia 0 2723 289 genus 1 2 1 Hirschia baltica 0 287 2724 species no rank 0 7 82117 1677 2 1 genus 431 213485 2 Micavibrio 0 429 349221 1 0 Micavibrio aeruginosavorus species 1 8 2 0 Phreatobacter 470 1632780 genus species 1868589 462 1 Phreatobacter sp. S-12 0 1 1 470 991903 2 0 Polymorphum genus 469 991904 0 Polymorphum gilvum 1 species clade 306 62654 0 1 0 1 767891 306 genus 1 0 Candidatus Puniceispirillum marinum 767892 306 species order 82 Sphingomonadales 0 204457 22894 121 1 1 216 17821 41297 59 0 Sphingomonadaceae family 1 65 4761 165695 15 Sphingobium 0 genus species 0 Sphingobium chlorophenolicum 1 434 46429 277 120107 Sphingobium cloacae 0 1 species 0 Sphingobium baderi 1 1332080 372 species no rank 6 0 2611147 1792 Sphingobium sp. YBL2 0 1 484429 368 species species 1 0 Sphingobium sp. MI1205 407020 271 1 Sphingobium sp. EP60837 0 156 1855519 species species 1 Sphingobium sp. RAC03 0 212 1843368 species 1 0 Sphingobium sp. TKS 412 1315974 1 Sphingobium sp. SYK-6 0 373 627192 species 0 Sphingobium herbicidovorans 1 76947 290 species 332055 333 0 Sphingobium indicum 1 species 478 13690 Sphingobium yanoikuyae 0 1 species species 332056 302 Sphingobium japonicum 0 1 1 0 Sphingobium hydrophobicum 418 1673076 species Citromicrobium 0 2 393 72173 genus 1 93 no rank 0 1 2630544 300 300 1634516 1 0 Citromicrobium sp. JL477 species 2685927 290 0 1 genus species Sphingomonas sp. JJ-A5 0 1 290 1921510 541 1354 2 0 Zymomonas genus 1 12 species 542 1342 Zymomonas mobilis 0 1 2 1 genus 2 0 Rhizorhabdus 377 1649486 species 375 1850238 0 Rhizorhabdus dicambivorans 1 genus 2709685 174 1 0 1 0 Sphingorhabdus flavimaris 266812 174 species 1 21 0 Novosphingobium 5 165696 1506 genus 0 1 333 2644732 no rank species 333 702113 0 Novosphingobium sp. PP1Y 1 species Novosphingobium pentaromativorans 0 1 405 205844 species 158500 351 0 Novosphingobium resinovorum 1 1 0 Novosphingobium aromaticivorans 48935 396 species genus 13687 4796 Sphingomonas 0 15 83 1 1 Sphingomonas panacis 0 270 1560345 species 1 0 Sphingomonas sanxanigenens 397260 396 species 1 385 794 160791 Sphingomonas wittichii 0 2 species 409 1283312 1 Sphingomonas sp. DC-6 0 strain 1 0 Sphingomonas koreensis 285 93064 species 1549858 355 0 Sphingomonas taxi 1 species 1943 196159 6 0 no rank species 1 Sphingomonas sp. LM7 0 238 1938607 species 1 Sphingomonas sp. NIC1 0 1961362 335 species 347 745310 1 Sphingomonas sp. MM-1 0 species 1390395 467 0 Sphingomonas sp. LK11 1 species 0 Sphingomonas sp. Cra20 1 1327635 293 species 263 1030157 Sphingomonas sp. KC8 0 1 species 344 1609977 0 Sphingomonas hengshuiensis 1 152682 326 1 0 Sphingomonas melonis species genus 2 Blastomonas 0 406 150203 10 1 0 1 396 2626550 no rank 0 Blastomonas sp. RAC04 1 396 1842535 species 1 76 165697 2894 10 Sphingopyxis 0 genus species 266 267128 Sphingopyxis granuli 0 1 0 Sphingopyxis terrae 1 179 33052 species no rank 2614943 1110 4 0 species 254 1913578 Sphingopyxis sp. LPB0140 0 1 0 Sphingopyxis sp. MG 1 290 1866325 species 291 292913 Sphingopyxis sp. 113P3 0 1 species species 275 1357916 Sphingopyxis sp. QXT-31 0 1 species 1 Sphingopyxis fribergensis 0 239 1515612 Sphingopyxis macrogoltabida 0 1 33050 607 species 1 Sphingopyxis alaskensis 0 117207 417 species 18 1 genus 654 1434046 Sphingorhabdus 0 3 0 2 636 2614947 no rank Sphingorhabdus sp. YGSMI21 0 1 261 2077182 species species 1 0 Sphingorhabdus sp. M41 375 1806885 4952 335929 Erythrobacteraceae 0 22 family 1 100 1295327 541 0 Croceicoccus 3 genus 1 16 species 450378 278 Croceicoccus marinus 0 1 1 Croceicoccus naphthovorans 0 1348774 247 species no rank 1376 2800788 0 6 19 1 genus 802 1041 3 Erythrobacter 0 0 Erythrobacter litoralis 1 499 39960 species species 0 Porphyrobacter neustonensis 1 284 1112 genus 3 0 Porphyrobacter 1111 574 22 1 no rank 552 2683265 0 2 species 1896196 210 Porphyrobacter sp. LM 6 0 1 342 2023229 1 Porphyrobacter HT-58-2 0 species genus 0 1 228 2800685 1 0 Altererythrobacter marensis 228 543877 species 1 0 245 2800682 genus species 0 Altererythrobacter namhicola 1 645517 245 genus 2 0 463 2800681 species Erythrobacter gangjinensis 0 1 502682 330 Erythrobacter atlanticus 0 1 1648404 133 species 104 1 genus 361177 980 0 Altererythrobacter 4 species 476157 155 1 Altererythrobacter ishigakiensis 0 0 Altererythrobacter atlanticus 1 1267766 404 species species 0 Altererythrobacter epoxidivorans 1 361183 317 0 2 494 1855416 genus 1 0 Erythrobacter flavus 192812 267 species 266951 227 1 0 Erythrobacter seohaensis species 525 2800686 2 0 genus 253 1982042 Altererythrobacter mangrovi 0 1 species species 272 692370 1 0 Altererythrobacter dongtanensis 7 1 order 51 0 Rickettsiales 766 5843 family 22 0 Anaplasmataceae 942 2594 2 1 1 1 187 33993 Neorickettsia 0 4 genus species 63 951 0 Neorickettsia sennetsu 1 species 77 950 1 0 Neorickettsia risticii species 1 Neorickettsia helminthoeca 0 33994 46 0 3 768 270 genus 71 106179 0 1 species group species 1 0 Anaplasma phagocytophilum 71 948 species 769 31 Anaplasma centrale 0 1 species 0 Anaplasma marginale 1 770 168 Ehrlichia 0 6 1078 943 genus 1 1 species group 106178 913 0 4 100 944 0 Ehrlichia canis 1 species 176 35795 1 0 Ehrlichia muris species 479 779 1 Ehrlichia ruminantium 0 species 945 158 0 Ehrlichia chaffeensis 1 species 106181 164 0 1 no rank 1 0 Ehrlichia sp. HF 391036 164 species tribe 8 0 1057 952 genus 953 1057 8 Wolbachia 0 54 1 no rank 2640676 1003 0 7 species 1 Wolbachia sp. wRi 0 90 66084 species 59 163164 1 Wolbachia endosymbiont of Drosophila melanogaster 0 1 0 Wolbachia endosymbiont of Onchocerca volvulus 77551 156 species Wolbachia endosymbiont of Cimex lectularius 0 1 246273 104 species species 103 80849 0 Wolbachia endosymbiont of Brugia malayi 1 species 287 77038 1 0 Wolbachia endosymbiont of Drosophila simulans 1 Wolbachia endosymbiont of Onchocerca ochengi 0 100901 204 species 1 0 260 1699067 no rank 1528098 260 Rickettsiales bacterium Ac37b 0 1 species 1 1 1328881 105 2 Candidatus Midichloriaceae 0 family genus 411566 104 0 1 species 234827 104 Candidatus Midichloria mitochondrii 0 1 family 0 25 2877 775 2115980 131 1 0 genus 0 Candidatus Phycorickettsia trachydisci 1 2115978 131 species 2746 33988 0 24 tribe 69474 368 0 1 genus species 784 368 0 Orientia tsutsugamushi 1 genus 780 2378 23 Rickettsia 0 300 1 114295 113 1 0 no rank 337479 113 0 Rickettsia endosymbiont of Bemisia tabaci 1 species species group 2 0 1129742 233 species 33990 170 1 0 Rickettsia bellii 1 Rickettsia canadensis 0 788 63 species species group 210 114292 2 0 782 122 1 0 Rickettsia prowazekii species species Rickettsia typhi 0 1 88 785 17 0 1522 114277 species group species 33991 48 0 Rickettsia montanensis 1 45 33989 1 Rickettsia amblyommatis 0 species species 781 10 1 0 Rickettsia conorii species 1 0 Rickettsia rhipicephali 58 33992 48 783 0 Rickettsia rickettsii 1 species species 0 Rickettsia japonica 1 35790 13 35792 22 1 0 Rickettsia parkeri species species 1 0 Rickettsia felis 265 42862 species 1 Rickettsia australis 0 787 192 451 786 0 Rickettsia akari 1 species species 0 Rickettsia heilongjiangensis 1 9 226665 species 73 47589 1 Rickettsia peacockii 0 1 Rickettsia massiliae 0 46 35791 species 109232 128 1 0 Rickettsia monacensis species Rickettsia africae 0 1 54 35788 species 1105106 11 Rickettsia philipii 0 1 species species 49 35794 1 0 Rickettsia slovaca 186 1 order 85 0 Rhodobacterales 25311 204455 419 1 family 25125 31989 Rhodobacteraceae 0 84 genus 302485 2582 5 Phaeobacter 0 50 1 636 60890 1 0 Phaeobacter gallaeciensis species 1 Phaeobacter inhibens 0 963 221822 species species 1 Phaeobacter porticola 0 1844006 177 species 756 1580596 1 0 Phaeobacter piscinae genus 1 0 401 2211641 1 0 Loktanella vestfoldensis 245188 401 species 2 0 Marinovum 367771 507 genus 1 4 species 503 42444 0 Marinovum algicola 1 2 1 genus 2 0 Leisingera 191028 355 0 Leisingera methylohalidivorans 1 353 133924 species 347 309512 2 0 Dinoroseobacter genus 1 1 346 215813 Dinoroseobacter shibae 0 1 species genus 1 0 188905 268 no rank 0 1 2645469 268 species 0 Jannaschia sp. CCS1 1 290400 268 genus Halocynthiibacter 0 2 58 1579315 1 1 1 Halocynthiibacter arcticus 0 1579316 57 species 1 1 genus 1102 875170 5 0 Celeribacter 1 Celeribacter indicus 0 391 1208324 species 1758178 251 Celeribacter ethanolicus 0 1 species Celeribacter marinus 0 1 1397108 146 species species Celeribacter manganoxidans 0 1 313 1411902 1060 2103 0 Rhodobacter 5 genus 1 23 1061 314 1 0 Rhodobacter capsulatus species no rank 196779 630 0 2 1 Rhodobacter sp. CZR27 0 413 2033869 species Rhodobacter sp. LPB0142 0 1 1850250 217 species 0 Rhodobacter sphaeroides 1 1063 1136 species 640 2433 3 Roseobacter 0 genus 1 3 species 1 0 Roseobacter denitrificans 378 2434 259 42443 0 Roseobacter litoralis 1 species genus 4 0 Octadecabacter 745 53945 1 1 1 0 Octadecabacter antarcticus 1217908 183 species species 1 0 Octadecabacter temperatus 157 1458307 0 Octadecabacter arcticus 1 53946 404 species no rank 2 0 896 58840 species 0 Rhodobacteraceae bacterium QY30 1 2033435 292 species 604 1904441 Rhodobacteraceae bacterium 0 1 1 0 159345 305 genus Roseibacterium elongatum 0 1 159346 305 species Thioclava 0 2 281 285107 genus 1 2 279 1915078 0 Thioclava nitratireducens 1 species 74030 307 1 0 genus 1 Roseovarius mucosus 0 215743 307 species 92944 549 0 2 genus 92945 260 1 Ketogulonicigenium vulgare 0 species Ketogulonicigenium robustum 0 1 289 92947 species 1 0 294 1649279 genus 294 379347 1 Ruegeria mobilis 0 species 11 1 genus 1370 34008 4 Rhodovulum 0 1 Rhodovulum sulfidophilum 0 655 35806 species 2631432 704 2 0 no rank 322 308754 Rhodovulum sp. MB263 0 1 species species 1564506 382 Rhodovulum sp. P5 0 1 1 3 Sagittula 0 2 58842 676 genus no rank 1 0 673 2624628 1 Sagittula sp. P11 0 2009329 673 species 1759396 292 2 0 Marivivens genus 1 2 no rank 1 0 2622455 290 species 1 0 Marivivens sp. JLT3646 290 1920883 1 11 627 227873 2 Pannonibacter 0 genus 1 0 Pannonibacter phragmitetus 616 121719 species 0 1 185 119541 genus 185 441209 Rhodobaca barguzinensis 0 1 species 1 33 0 Labrenzia 4 478070 1293 genus 187304 428 1 Labrenzia aggregata 0 species 0 2 2648686 832 no rank species 0 Labrenzia sp. CP4 1 449 1674922 species Labrenzia sp. VG12 0 1 2021862 383 0 1 238 299261 genus 299262 238 1 Tateyamaria omphalii 0 species 0 Thalassococcus 1 2 436357 genus Confluentimicrobium 0 2 553 1609958 genus 1 2 no rank 1 0 2643318 551 species 551 1609966 Confluentimicrobium sp. EMB200-NS6 0 1 747 60136 3 0 Sulfitobacter genus 1 5 0 Sulfitobacter pseudonitzschiae 1 455 1402135 species no rank 196795 287 0 1 species 287 1917485 1 0 Sulfitobacter sp. AM1-D1 4 1 genus 521 1097466 Defluviimonas 0 2 Defluviimonas alba 0 1 517 1335048 species 0 1 74032 325 genus species 1 0 Antarctobacter heliothermus 325 74033 1 38 0 Paracoccus 9 3687 265 genus species 0 Paracoccus sp. CBA4604 1 2065379 323 Paracoccus aminophilus 0 1 34003 383 species species 1 0 Paracoccus yeei 698 147645 0 Paracoccus denitrificans 1 266 567 species no rank 246570 405 0 1 1529068 405 1 0 Paracoccus sp. BM15 species Paracoccus aminovorans 0 1 34004 376 species 1945662 377 1 0 Paracoccus contaminans species species 1 0 Paracoccus zhejiangensis 1077935 520 1 2 360528 625 2 Pelagibaca 0 genus species 1 0 Pelagibaca abyssi 1250539 623 genus 1025 263377 2 0 no rank 490 2640570 0 1 1792508 490 0 Yangia sp. CCB-MM3 1 species species 535 1229727 Thiobacimonas profunda 0 1 1284657 142 1 0 genus 1 Planktomarina temperata 0 142 1284658 species 1 1 97050 658 3 Ruegeria 0 genus species 89184 405 1 Ruegeria pomeroyi 0 no rank 1 0 252 2625375 species 292414 252 Ruegeria sp. TM1040 0 1 order 3 0 Magnetococcales 478 1191478 3 1 1191479 475 2 Magnetococcaceae 0 family 1 1 474 162171 0 1 genus species 0 Magnetococcus marinus 1 1124597 474 order 63660 356 0 Rhizobiales 204 589 1 18 Bartonellaceae 0 3814 772 family 1 10 773 3804 17 0 Bartonella genus 1 18 species Bartonella tribocorum 0 1 116 85701 species 172 388640 1 0 Bartonella australis 1 Bartonella henselae 0 38323 188 species 1 Bartonella vinsonii 0 33047 93 species Bartonella bacilliformis 0 1 122 774 species 2645622 1079 6 0 no rank 0 Bartonella sp. A1379B 1 1933910 108 species species 0 Bartonella sp. 1-1C 1 124 515256 58 1933912 0 Bartonella sp. Raccoon60 1 species 1 0 Bartonella sp. JB63 1933907 181 species 1933904 427 0 Bartonella sp. WD16.2 1 species species 181 1933906 Bartonella sp. JB15 0 1 0 Bartonella apis 1 1686310 1062 species Bartonella quintana 0 1 258 803 species species 56426 214 1 0 Bartonella clarridgeiae species 1318743 252 0 Bartonella ancashensis 1 species 230 33045 0 Bartonella grahamii 1 114 1 family 41294 10662 26 Bradyrhizobiaceae 0 genus 1649510 213 2 Variibacter 0 7 1 species 0 Variibacter gotjawalensis 1 206 1333996 1 3 482 911 0 Nitrobacter 3 genus species 234 913 1 Nitrobacter winogradskyi 0 species 1 Nitrobacter hamburgensis 0 245 912 5088 374 11 0 Bradyrhizobium genus 1 132 species 0 Bradyrhizobium oligotrophicum 1 44255 427 1 0 Bradyrhizobium japonicum 375 770 species Bradyrhizobium diazoefficiens 0 1 1355477 799 species no rank 2631580 2626 6 0 species 114615 539 1 0 Bradyrhizobium sp. ORS 278 species 346 376 1 0 Bradyrhizobium sp. species 288000 420 1 0 Bradyrhizobium sp. BTAi1 species 1223566 510 1 0 Bradyrhizobium sp. CCGE-LA001 species 0 Bradyrhizobium sp. SK17 1 388 2057741 423 115808 1 Bradyrhizobium sp. ORS 285 0 species species 334 1274631 1 0 Bradyrhizobium icense Oligotropha 0 2 40136 288 genus 1 3 species 40137 285 1 Oligotropha carboxidovorans 0 genus 2 Rhodopseudomonas 0 2634 1073 28 1 1 Rhodopseudomonas palustris 0 2606 1076 species 0 Bosea 5 1843 85413 genus 1 13 2653178 1346 3 0 no rank 1 Bosea sp. AS-1 0 537 2015316 species species 1 Bosea sp. PAMC 26642 0 323 1792307 1842539 486 1 Bosea sp. RAC05 0 species species 1 0 Bosea vaviloviae 484 1526658 2036754 926 4 Chelatococcaceae 0 family 1 8 918 28209 0 Chelatococcus 3 genus 1 33 444444 335 Chelatococcus daeguensis 0 1 species no rank 1 0 550 2638111 0 Chelatococcus sp. CO-6 1 550 1702325 species 19 0 Hyphomicrobiaceae 4461 45401 family 1 11 genus Blastochloris 0 2 59282 315 8 1 species 1 0 Blastochloris viridis 1079 307 Filomicrobium 0 2 358 119044 genus 1 22 Candidatus Filomicrobium marinum 0 1 336 1608628 species 38 1 genus 1516 46913 Devosia 0 4 3 0 1478 196773 no rank 489 1643450 Devosia sp. H5989 0 1 species 1 0 Devosia sp. I507 2083786 305 species species 1 Devosia sp. A16 0 684 1736675 11 1 genus 0 Hyphomicrobium 4 81 1156 2619925 372 1 0 no rank 372 717785 1 Hyphomicrobium sp. MC1 0 species species 358 1427356 1 Hyphomicrobium nitrativorans 0 species 1 0 Hyphomicrobium denitrificans 53399 415 genus 388 29407 Rhodoplanes 0 2 11 1 no rank 2619116 377 0 1 1 0 Rhodoplanes sp. Z2-YC6860 674703 377 species 1 9 2 Rhodomicrobium 0 339 1068 genus species 1 0 Rhodomicrobium vannielii 1069 330 2 Pelagibacterium 0 378 1082930 genus 1 2 species 0 Pelagibacterium halotolerans 1 376 531813 0 Brucellaceae 20 118882 2666 family 1 16 372 1 genus 1196 234 14 Brucella 0 1 Brucella suis 0 28 29461 species 1 0 Brucella abortus 15 235 species species 46 36855 1 0 Brucella canis 1 0 Brucella ovis 16 236 species species 48 120577 0 Brucella ceti 1 species 119 29459 1 0 Brucella melitensis species 0 Brucella microti 1 444163 24 no rank 2632610 399 4 0 species 0 Brucella sp. 09RB8910 1 118 1844051 species 1885919 131 Brucella sp. 141012304 0 1 12 1891098 1 Brucella sp. 2002734562 0 species species 1149952 138 1 0 Brucella sp. 09RB8471 1 Brucella vulpis 0 81 981386 species species 48 120576 0 Brucella pinnipedialis 1 genus 0 Ochrobactrum 5 528 1454 20 1 373 571256 Ochrobactrum pituitosum 0 1 species 367 529 1 Ochrobactrum anthropi 0 species 419475 312 1 Ochrobactrum pseudogrignonense 0 species 1 Ochrobactrum sp. A44 0 271865 382 species 1 43 69277 5953 20 0 Phyllobacteriaceae family genus 0 Mesorhizobium 9 68287 3810 77 1 1 Mesorhizobium sp. B7 0 1670800 233 species species 71433 431 Mesorhizobium amorphae 0 1 no rank 0 1 325217 467 species 278153 467 1 0 Mesorhizobium sp. WSM1497 425 593909 1 0 Mesorhizobium opportunistum species species 1 Mesorhizobium australicum 0 536018 371 species 2066070 623 0 Mesorhizobium japonicum 1 1 0 Mesorhizobium ciceri 602 39645 species 581 381 1 0 Mesorhizobium loti species genus 0 Phyllobacterium 2 393 28100 1 1 species 392 1867719 1 Phyllobacterium zundukense 0 1 1 genus 449972 242 2 Chelativorans 0 no rank 0 1 2643807 241 species 241 266779 0 Chelativorans sp. BNC1 1 31988 681 0 Aminobacter 2 genus 1 8 83263 673 0 Aminobacter aminovorans 1 species 11 1 genus Nitratireductor 0 2 245876 466 species 472175 455 Nitratireductor basaltis 0 1 1 2 Hoeflea 0 2 274591 318 genus 1 0 316 2614931 no rank species 1620421 316 1 0 Hoeflea sp. IMCC20628 0 3 665 45404 family genus 372 532 0 1 species 372 533 Beijerinckia indica 0 1 293 120652 2 0 Methylocella genus 1 5 species 1 0 Methylocella silvestris 199596 288 5 1 family Methylocystaceae 0 6 824 31993 1 11 2 0 Methylosinus 425 363 genus 352 426 0 Methylosinus trichosporium 1 species 133 456 Methylocystis 0 3 genus 1 8 Methylocystis bryophila 0 1 655015 266 species 2625913 182 0 1 no rank species 1 Methylocystis sp. SC2 0 182 187303 7 0 Xanthobacteraceae 1641 335928 family 1 14 genus Starkeya 0 2 470 152053 12 1 458 921 0 Starkeya novella 1 species 2 Azorhizobium 0 555 6 genus 1 17 0 Azorhizobium caulinodans 1 7 538 species 17 1 genus 602 279 0 Xanthobacter 2 species 280 585 1 Xanthobacter autotrophicus 0 family 255475 1885 7 Aurantimonadaceae 0 9 1 genus 438 414371 0 Aureimonas 2 8 1 0 1 430 2615206 no rank species Aureimonas sp. AU20 0 1 1349819 430 Martelella 0 4 1438 293088 genus 1 28 570 293089 0 Martelella mediterranea 1 species 2629616 461 0 1 no rank species 686597 461 Martelella sp. AD-3 0 1 species 0 Martelella endophytica 1 379 1486262 family 0 Rhizobiaceae 52 21174 82115 157 1 no rank 10 0 227292 4368 genus Sinorhizobium 0 7 28105 3447 123 1 194963 506 0 Sinorhizobium americanum 1 species species Sinorhizobium meliloti 0 1 382 788 species 1 Sinorhizobium medicae 0 110321 397 species group 1 0 663276 756 756 380 1 0 Sinorhizobium fredii species 0 2 2613772 877 no rank 1 Sinorhizobium sp. RAC02 0 627 1842534 species species 794846 250 1 0 Sinorhizobium sp. CCBAU 05631 3 Ensifer 0 921 106591 genus 1 6 species 106592 551 1 0 Ensifer adhaerens 716925 364 0 Ensifer sojae 1 species 33 0 15250 227290 no rank 61 1 genus 4037 357 7 Agrobacterium 0 359 540 1 0 Agrobacterium rhizogenes species species group 0 2 1183400 2302 1 Agrobacterium tumefaciens 0 1797 358 species species Agrobacterium fabrum 0 1 1176649 505 0 2 2632611 750 no rank 1 Agrobacterium sp. RAC06 0 1842536 315 species species 435 861208 Agrobacterium sp. H13-3 0 1 384 373 0 Agrobacterium vitis 1 species genus 2 0 Neorhizobium 736 1525371 6 1 730 399 0 Neorhizobium galegae 1 species 379 10477 0 Rhizobium 24 genus 1 701 0 Rhizobium leguminosarum 1 2274 384 species 398 390 Rhizobium tropici 0 1 species Rhizobium phaseoli 0 1 712 396 species 566 56730 1 0 Rhizobium gallicum species 18 0 2613769 4695 no rank 1703961 83 1 0 Rhizobium sp. N1314 species species 1 Rhizobium sp. N731 0 1703966 83 species 1 0 Rhizobium sp. ACO-34A 446 1571470 1 0 Rhizobium sp. TAL182 2020313 110 species 424182 419 Rhizobium sp. IRBG74 0 1 species species 1914541 491 Rhizobium sp. Y9 0 1 species 0 Rhizobium sp. N324 1 297 1703969 2 1703967 0 Rhizobium sp. N741 1 species species 307 2020311 0 Rhizobium sp. Kim5 1 361 2048897 1 0 Rhizobium sp. NXC24 species 1 0 Rhizobium sp. N113 2 1703960 species 386 2028343 Rhizobium sp. 10195 0 1 species 1869170 388 0 Rhizobium sp. S41 1 species species 297 1981173 0 Rhizobium sp. NXC14 1 species 1 1703968 1 Rhizobium sp. N871 0 Rhizobium sp. NT-26 0 1 303 1125847 species species 1 0 Rhizobium sp. CIAT894 2020312 373 species 346 1301032 1 Rhizobium sp. IE4771 0 species 1139 29449 Rhizobium etli 0 1 1 2 0 Liberibacter 6 34019 690 genus species 309868 233 1 0 Candidatus Liberibacter americanus 1 0 Liberibacter crescens 199 1273132 species species 0 Candidatus Liberibacter asiaticus 1 42 34021 species 79 34020 0 Candidatus Liberibacter africanus 1 Candidatus Liberibacter solanacearum 0 1 556287 135 species genus 709 323620 2 Shinella 0 14 1 no rank 1 0 2643062 695 species Shinella sp. HZN7 0 1 879274 695 family 214 119043 0 1 1 0 256616 214 genus species 256618 214 Parvibaculum lavamentivorans 0 1 119042 1060 0 5 no rank 2 0 Pseudorhodoplanes 1734920 244 genus 1 3 241 1235591 Pseudorhodoplanes sinuspersici 0 1 species 1572860 450 Hartmannibacter 0 2 genus 1 7 0 Hartmannibacter diazotrophicus 1 443 1482074 species genus 1484898 366 0 1 1 0 Methyloceanibacter caenitepidi 366 1384459 species 119045 7126 15 0 Methylobacteriaceae family 1 49 genus 0 3 2282523 2742 species 29429 414 0 Methylobacterium zatmanii 1 species 408 1483 Methylobacterium extorquens 0 1 1 0 Methylobacterium populi 223967 845 species 1 228 407 3855 0 Methylobacterium 9 genus species 1 Methylobacterium nodulans 0 114616 483 no rank 2615210 1402 3 0 426117 529 1 0 Methylobacterium sp. 4-46 species 0 Methylobacterium sp. AMS5 1 925818 429 species 444 1479019 Methylobacterium sp. C1 0 1 species 270351 488 1 Methylobacterium aquaticum 0 species species 0 Methylobacterium oryzae 1 366 334852 Methylobacterium radiotolerans 0 1 31998 538 species 1 Methylobacterium phyllosphaerae 0 418223 350 species 5 1 genus 186650 480 2 0 Microvirga species 1882682 475 1 0 Microvirga ossetica 219 1 order 23100 204441 64 0 Rhodospirillales 154 1 family Rhodospirillaceae 0 28 41295 12585 Niveispirillum 0 2 839 1543704 genus 1 21 818 1612173 Niveispirillum cyanobacteriorum 0 1 species genus 1091 1081 Rhodospirillum 0 3 37 1 1 Rhodospirillum centenum 0 34018 661 species species 0 Rhodospirillum rubrum 1 1085 393 1 122 Tistrella 0 2 719 171436 genus species Tistrella mobilis 0 1 171437 597 1263978 282 1 0 genus species 1 Candidatus Endolissoclinum faulkneri 0 1263979 282 1 90 191 4063 0 Azospirillum 5 genus species 345 1226968 Azospirillum humicireducens 0 1 species 1381 192 Azospirillum brasilense 0 1 1341 193 0 Azospirillum lipoferum 1 species 1 0 Azospirillum thiophilum 528244 906 species 8 1 genus 985 1543705 2 Nitrospirillum 0 species 1 Nitrospirillum amazonense 0 28077 977 genus 283 1612157 0 1 Pararhodospirillum photometricum 0 1 283 1084 species 168934 965 Thalassospira 0 3 genus 1 2 species 220697 574 0 Thalassospira xiamenensis 1 species 2048283 389 1 Thalassospira sp. CSC3H3 0 genus 2 Magnetospira 0 1182780 284 1 1 283 2685734 0 1 no rank species Magnetospira sp. QH-2 0 1 1288970 283 genus 258 1804663 1 0 258 1549855 0 Haematospirillum jordaniae 1 species 13134 2662 Magnetospirillum 0 5 genus 1 55 609 84159 0 Magnetospirillum magneticum 1 species 1207 2617991 2 0 no rank species 586 1663591 1 Magnetospirillum sp. XM-1 0 species 1639348 621 Magnetospirillum sp. ME-1 0 1 species 1 0 Magnetospirillum gryphiswaldense 791 55518 1 161 Acetobacteraceae 0 35 433 10296 family 2 0 Neoasaia 320496 208 genus 1 1 species 1 Neoasaia chiangmaiensis 0 320497 207 24 1 genus 621 522 3 Acidiphilium 0 1 Acidiphilium cryptum 0 524 294 species species 0 Acidiphilium multivorum 1 62140 303 9 1 genus 441 1127 0 Gluconobacter 3 318683 234 0 Gluconobacter albidus 1 species species 442 884 0 Gluconobacter oxydans 1 3260 434 0 Acetobacter 8 genus 1 31 438 1146 1 Acetobacter pasteurianus 0 species subgenus 1 0 151157 378 species 1 0 Acetobacter aceti 378 435 Acetobacter pomorum 0 1 492 65959 species Acetobacter senegalensis 0 1 316 446692 species 253 1633874 1 Acetobacter oryzifermentans 0 species Acetobacter tropicalis 0 1 390 104102 species 1 0 Acetobacter persici 1076596 254 species 0 Gluconacetobacter 2 89583 344 genus 1 2 1 0 Gluconacetobacter diazotrophicus 342 33996 species genus Parasaccharibacter 0 2 225 1602345 2 1 species Parasaccharibacter apium 0 1 223 1510841 0 Kozakia 2 153497 582 genus 1 1 species 153496 581 0 Kozakia baliensis 1 11 1 genus 0 Granulibacter 2 364409 781 Granulibacter bethesdensis 0 1 770 364410 species 3 0 Roseomonas 125216 1244 genus 1 34 0 Roseomonas gilardii 1 516 257708 species 694 2617492 1 0 no rank Roseomonas sp. FDAARGOS_362 0 1 694 2018065 species 1 1 genus 91914 253 Asaia 0 2 Asaia bogorensis 0 1 252 91915 species genus 1490 1434011 5 Komagataeibacter 0 32 1 species 1177712 301 0 Komagataeibacter medellinensis 1 species Komagataeibacter xylinus 0 1 28448 645 species 33995 211 Komagataeibacter europaeus 0 1 species 265960 301 Komagataeibacter nataicola 0 1 20 Caulobacterales 0 204458 6170 order 1 34 1 68 Caulobacteraceae 0 19 76892 6136 family 1 1 0 Phenylobacterium 2 623 20 genus species 284016 622 Phenylobacterium zucineum 0 1 no rank 229 81440 0 1 1759059 229 1 Caulobacteraceae bacterium OTSz_A_272 0 species 1 10 0 Asticcacaulis 2 383 76890 genus species 1 0 Asticcacaulis excentricus 78587 373 1 31 75 2761 Caulobacter 0 6 genus species 597 69666 1 0 Caulobacter mirabilis no rank 1 0 635 2648921 species 635 366602 Caulobacter sp. K31 0 1 1 0 Caulobacter vibrioides 827 155892 species species 1 Caulobacter henricii 0 69395 301 88688 370 Caulobacter segnis 0 1 species 51 1 genus 7 Brevundimonas 0 41275 2072 no rank 2622653 1056 3 0 1 Brevundimonas sp. LM2 0 289 1938605 species species 1 0 Brevundimonas sp. DS20 1532555 366 species 1 Brevundimonas sp. GW460-12-10-14-LB2 0 401 1827469 species 1 Brevundimonas vesicularis 0 281 41276 species 0 Brevundimonas subvibrioides 1 346 74313 1 0 Brevundimonas naejangsanensis 338 588932 species 255473 90 3 0 order 1 1 family Parvularculaceae 0 3 255474 90 89 208215 2 0 Parvularcula genus 1 2 species 208216 87 1 0 Parvularcula bermudensis 1 4 1921002 648 0 Holosporales 5 order 290 1777752 0 1 family 290 1521255 0 1 genus species Candidatus Paracaedibacter acanthamoebae 0 1 290 91604 11 1 family 180 2100208 2 0 Caedimonadaceae 1509243 169 1 0 genus species 169 1509244 1 0 Candidatus Nucleicultrix amoebiphila 0 1 44746 174 family 174 204454 1 0 no rank endosymbiont of Acanthamoeba sp. UWC8 0 1 86106 174 species 1553900 2500 Oligoflexia 0 8 class 1 4 2 0 2024979 789 order 0 1 260 1652132 family genus 1 0 1652133 260 species 0 Halobacteriovorax marinus 1 260 97084 family 1 0 263369 529 146784 529 0 1 genus species 0 Bacteriovorax stolpii 1 960 529 1 2 213481 1707 5 Bdellovibrionales 0 order 11 1 family Bdellovibrionaceae 0 4 213483 1705 1 2 3 0 Bdellovibrio 1694 958 genus 1521 959 1 0 Bdellovibrio bacteriovorus species 1 0 Bdellovibrio exovorus 453816 171 species subphylum 0 187 95764 68525 class 33662 29547 69 Epsilonproteobacteria 0 66 1 0 3 524 235899 order 0 1 2795691 217 family 217 269258 1 0 genus no rank 2624044 217 0 1 217 387092 Nitratiruptor sp. SB155-2 0 1 species family 2 0 Nautiliaceae 224467 307 2 1 305 191291 1 0 genus 1 0 Nautilia profundicola 305 244787 species 1 495 65 Campylobacterales 0 213849 33072 order family 0 4 2771471 849 genus 286130 291 1 0 species 148813 291 1 0 Sulfuricurvum kujiense genus Sulfurimonas 0 3 558 202746 2 1 1 Sulfurimonas autotrophica 0 202747 303 species 1 0 Sulfurimonas denitrificans 39766 253 species 1 1 3816 72293 15 Helicobacteraceae 0 family Helicobacter 0 12 209 3549 genus 1 6 0 Helicobacter cinaedi 1 213 290 species 2593540 137 1 0 no rank species 222136 137 Helicobacter sp. MIT 01-6242 0 1 species 1 Helicobacter pylori 0 1440 210 1591088 121 1 Helicobacter himalayensis 0 species species 0 Helicobacter acinonychis 1 106 212 species 32025 199 1 0 Helicobacter hepaticus 1 0 Helicobacter cetorum 578 138563 species 224 37372 1 Helicobacter bilis 0 species species Helicobacter mustelae 0 1 136 217 species 68 214 0 Helicobacter felis 1 1 Helicobacter typhlonius 0 76936 244 species 1 1 2 0 Wolinella 843 266 genus species 265 844 1 0 Wolinella succinogenes family 72294 26503 Campylobacteraceae 0 41 1694 1 57665 2187 9 0 Sulfurospirillum genus 1 11 species 44674 160 1 Sulfurospirillum barnesii 0 species 213 194424 0 Sulfurospirillum halorespirans 1 species 1 0 Sulfurospirillum deleyianum 374 65553 1017 2618290 0 3 no rank species 410 1581011 Sulfurospirillum sp. UCH001 0 1 species 158 220622 0 Sulfurospirillum sp. JPD-1 1 1 Sulfurospirillum sp. SL2-1 0 1986224 449 species species 207 366522 Sulfurospirillum cavolei 0 1 205 66821 1 Sulfurospirillum multivorans 0 species genus 20163 194 26 0 Campylobacter 273 1 197 4742 1 Campylobacter jejuni 0 species 7104 195 Campylobacter coli 0 1 species species Campylobacter cuniculorum 0 1 184 374106 1 0 Campylobacter lanienae 654 75658 species species 335 497724 Campylobacter subantarcticus 0 1 177 824 Campylobacter gracilis 0 1 species 200 92 1 0 Campylobacter curvus species 1 0 Campylobacter iguaniorum 276 1244531 species 4 0 2593542 841 no rank species 1660073 253 0 Campylobacter sp. RM6137 1 species 1 0 Campylobacter sp. RM12175 1660076 123 1 Campylobacter sp. RM8964 0 1660074 181 species species 1 Campylobacter sp. RM16704 0 284 1500960 species 827 433 Campylobacter ureolyticus 0 1 species 624 206 1 0 Campylobacter sputorum Campylobacter helveticus 0 1 82 28898 species species 196 742 1 0 Campylobacter fetus species 0 Campylobacter hyointestinalis 1 198 294 1 0 Campylobacter lari 1004 201 species Campylobacter concisus 0 1 329 199 species 187 522485 Campylobacter avium 0 1 species species 1 Campylobacter insulaenigrae 0 428 260714 1 0 Campylobacter peloridis 488546 322 species 1 Campylobacter hominis 0 76517 217 species 1031542 292 1 Campylobacter volucris 0 species species 1965231 531 0 Campylobacter pinnipediorum 1 0 5 2459 2321108 no rank 2321207 632 1 0 no rank species 1 Arcobacter sp. L 0 632 944547 genus 0 Arcobacter 3 1406 28196 2 1 1 0 Arcobacter butzleri 786 28197 species species 1 0 Arcobacter nitrofigilis 28199 618 genus 2321187 421 1 0 1850254 421 0 Arcobacter sp. LPB0137 1 species family 4 0 1409 2771472 8 1 genus 265570 1078 3 0 Sulfurovum no rank 0 1 2646778 420 387093 420 Sulfurovum sp. NBC37-1 0 1 species 1 0 Sulfurovum lithotrophicum 650 206403 species genus 1 0 269260 331 species 269261 331 1 0 Nitratifractor salsuginis 1 95 118 0 Deltaproteobacteria 28221 62102 class 26 1 order 17 0 Desulfobacterales 213118 4750 213119 2623 Desulfobacteraceae 0 8 family 1 8 genus 218207 615 0 Desulfatibacillum 2 1 1 1 0 Desulfatibacillum alkenivorans 259354 614 species 2295 374 1 0 genus species 1 0 Desulfobacterium autotrophicum 374 2296 1060 896 Desulfococcus 0 3 genus 1 6 species 1 Desulfococcus oleovorans 0 181663 550 504 897 0 Desulfococcus multivorans 1 species genus 1 0 28222 566 species Desulfobacula toluolica 0 1 28223 566 8 0 Desulfobulbaceae 2101 213121 family 1 15 38 1 genus 893 853 Desulfobulbus 0 2 species 815 1986146 1 Desulfobulbus sp. ORNL 0 6 1 genus 427922 526 0 Desulfurivibrio 2 species 0 Desulfurivibrio alkaliphilus 1 427923 520 3 1 genus 109168 298 Desulfotalea 0 2 0 Desulfotalea psychrophila 1 84980 295 species genus 409 53318 0 1 65555 409 Desulfocapsa sulfexigens 0 1 species 249 1 order 69541 10586 24 Desulfuromonadales 0 1 34 6736 213422 0 Geobacteraceae 14 family 1 105 11 0 Geobacter 28231 6185 genus 616 28232 1 Geobacter metallireducens 0 species 0 2 2627627 1521 no rank 1 Geobacter sp. M21 0 443144 624 species 443143 897 1 Geobacter sp. M18 0 species 0 Geobacter daltonii 1 548 1203471 species species 345632 558 1 0 Geobacter pickeringii 1 Geobacter uraniireducens 0 436 351604 species 0 Geobacter lovleyi 1 744 313985 species species Geobacter sulfurreducens 0 1 35554 541 225194 609 Geobacter bemidjiensis 0 1 species 0 Geobacter anodireducens 1 507 1340425 species genus 517 392332 2 0 Geoalkalibacter 2 1 species 1 Geoalkalibacter subterraneus 0 515 483547 1 33 213421 3601 9 Desulfuromonadaceae 0 family Desulfuromonas 0 3 890 1198 genus 1 5 0 Desulfuromonas soudanensis 1 424 1603606 species no rank 1 0 769 2614637 0 Desulfuromonas sp. DDH964 1 769 1823759 species 1 21 5 Pelobacter 0 2370 18 genus 653 29542 1 0 Pelobacter acetylenicus species species Pelobacter carbinolicus 0 1 497 19 1 0 2620299 515 no rank species 1842532 515 1 0 Pelobacter sp. SFB93 684 29543 1 Pelobacter propionicus 0 species order 37 Myxococcales 0 29 15343 157 1 80811 11681 26 0 suborder 45 1 family 9 0 Archangiaceae 3439 39 796 44 2 0 Melittangium genus 1 12 1 Melittangium boletus 0 784 83453 species 13 1 genus 47 966 2 Archangium 0 953 48 1 Archangium gephyra 0 species 1 1 genus 40 689 2 Stigmatella 0 species 41 688 1 0 Stigmatella aurantiaca genus 2 0 Cystobacter 42 943 4 1 43 939 0 Cystobacter fuscus 1 species 26 1 family 31 5456 9 0 Myxococcaceae genus 5 0 Myxococcus 3575 32 128 1 33 1367 1 0 Myxococcus fulvus species species 747 83455 Myxococcus stipitatus 0 1 species 34 659 0 Myxococcus xanthus 1 species 1297742 674 Myxococcus hansupus 0 1 Corallococcus 0 3 83461 1855 genus 1 27 species 942 184914 Corallococcus coralloides 0 1 species 886 35 1 0 Myxococcus macrosporus 2 1 family 455 1524213 0 Vulgatibacteraceae 3 9 1 genus Vulgatibacter 0 2 1524214 453 1 0 Vulgatibacter incomptus 1391653 444 species 1 18 1524215 2331 5 0 Anaeromyxobacteraceae family 0 Anaeromyxobacter 4 161492 2313 genus 1 32 0 2 2620896 1185 no rank Anaeromyxobacter sp. Fw109-5 0 1 528 404589 species 1 Anaeromyxobacter sp. K 0 657 447217 species species 1 0 Anaeromyxobacter dehalogenans 1096 161493 suborder 80812 2631 0 7 family Sandaracinaceae 0 3 511 1055686 2 1 genus 0 Sandaracinus 2 1055688 509 6 1 0 Sandaracinus amylolyticus 1 927083 503 species Polyangiaceae 0 4 2120 49 family 1 19 486 50 0 1 genus 52 486 1 Chondromyces crocatus 0 species 13 1 genus 39643 1615 0 Sorangium 2 species 1 Sorangium cellulosum 0 1602 56 suborder 0 3 224462 874 7 1 family 874 224464 3 0 Kofleriaceae 1 10 867 162027 2 0 Haliangium genus species Haliangium ochraceum 0 1 80816 857 1 1 213462 1485 Syntrophobacterales 0 8 order family 0 2 438 213465 2 0 Syntrophobacter 29526 438 genus 1 1 119484 437 0 Syntrophobacter fumaroxidans 1 species 1 2 1046 213468 0 Syntrophaceae 5 family 318 60892 1 0 genus species 0 Desulfobacca acetoxidans 1 318 60893 1 3 43773 500 2 Syntrophus 0 genus species 316277 497 1 Syntrophus aciditrophicus 0 0 1 226 2357 genus species 1 Desulfomonile tiedjei 0 226 2358 1 15 453227 816 4 0 Desulfarculales order 453228 801 0 Desulfarculaceae 3 family 1 13 453229 788 2 0 Desulfarculus genus 1 1 species 787 453230 1 0 Desulfarculus baarsii order 713 213113 4 0 family 117942 713 4 Desulfurellaceae 0 2 1 2 Desulfurella 0 497 33001 genus 1 4 species 493 33002 0 Desulfurella acetivorans 1 genus 84404 214 0 1 species Hippea maritima 0 1 84405 214 118 1 order 213115 28314 0 Desulfovibrionales 23 family 0 1 213117 201 45662 201 0 1 genus species 201 45663 Desulfohalobium retbaense 0 1 1 15 213116 1396 0 Desulfomicrobiaceae 4 family 11 1 genus 898 1381 3 0 Desulfomicrobium species 132132 712 1 Desulfomicrobium orale 0 species 1 Desulfomicrobium baculatum 0 899 658 Desulfovibrionaceae 0 17 26599 194924 family 1 62 2582840 708 0 1 genus species Desulfovibrio africanus 0 1 873 708 1 0 733 2794998 genus species 1 0 Desulfovibrio salexigens 880 733 94 1 genus 2346 2035811 Pseudodesulfovibrio 0 4 species Pseudodesulfovibrio indicus 0 1 1716143 1075 1 Pseudodesulfovibrio aespoeensis 0 182210 661 species 1 Pseudodesulfovibrio profundus 0 57320 516 species 41707 548 1 0 genus 1 0 Lawsonia intracellularis 548 29546 species 72 1 genus 9 0 Desulfovibrio 22202 872 no rank 2593640 791 1 0 species Desulfovibrio sp. G11 0 1 791 631220 1 Desulfovibrio piger 0 901 14004 species species 1 Desulfovibrio desulfuricans 0 1688 876 1 Desulfovibrio vulgaris 0 2455 881 species species 58180 753 0 Desulfovibrio alaskensis 1 species Desulfovibrio fairfieldensis 0 1 1284 44742 species 1725232 309 0 Candidatus Desulfovibrio trichonymphae 1 species 184917 846 1 0 Desulfovibrio magneticus 1 670 0 Gammaproteobacteria 866 381187 1236 class 43 0 Vibrionales 21304 135623 order 1 3 67 1 family 641 21301 42 Vibrionaceae 0 1 0 2042066 342 genus species Paraphotobacterium marinum 0 1 342 1755811 genus Grimontia 0 2 246861 304 2 1 Grimontia hollisae 0 1 673 302 species genus 1608 657 Photobacterium 0 4 23 1 500 74109 Photobacterium profundum 0 1 species species 0 Photobacterium damselae 1 602 38293 1 Photobacterium gaetbulicola 0 1295392 483 species 1 158 662 17472 30 0 Vibrio genus species 687 335 Vibrio gazogenes 0 1 55601 394 1 0 Vibrio anguillarum species 1258 672 0 Vibrio vulnificus 1 species 717610 7938 10 0 species group species 190895 423 1 Vibrio rotiferianus 0 species 0 Vibrio owensii 1 696485 768 1210 680 1 0 Vibrio campbellii species species 1735 670 1 Vibrio parahaemolyticus 0 species subgroup 849 2315253 2 0 species 303 150340 Vibrio antiquarius 0 1 species 50719 546 1 Vibrio diabolicus 0 Vibrio jasicida 0 1 766224 430 species species 1 Vibrio natriegens 0 691 728 species 0 Vibrio harveyi 1 669 817 Vibrio alginolyticus 0 1 663 978 species 0 Vibrio breoganii 1 390 553239 species species Vibrio nigripulchritudo 0 1 28173 422 no rank 2614977 622 0 2 species 270 1116375 1 0 Vibrio sp. EJY3 352 2014742 0 Vibrio sp. 2521-89 1 species species 52443 332 0 Vibrio tapetis 1 337 45658 1 0 Vibrio scophthalmi species 0 Vibrio tritonius 1 421 1435069 species species 774 666 1 0 Vibrio cholerae species 29494 401 1 0 Vibrio furnissii Vibrio qinghaiensis 0 1 2025808 253 species species group 1891919 154 0 1 species 1 0 Vibrio tubiashii 29498 154 species 1 Vibrio mimicus 0 848 674 931 676 1 0 Vibrio fluvialis species 725 190893 0 Vibrio coralliilyticus 1 species species 372 212663 1 Vibrio tasmaniensis 0 407 1534743 1 0 Vibrio hyugaensis species 1 14 511678 1508 0 Aliivibrio 4 genus species 636 668 1 Aliivibrio fischeri 0 1 Aliivibrio wodanis 0 560 80852 species 0 Aliivibrio salmonicida 1 298 40269 species order Aeromonadales 0 28 14901 135624 102 1 71 1 family 27 Aeromonadaceae 0 14799 84642 2 0 303 225143 genus species 164 1416627 Oceanisphaera profunda 0 1 species 1 Oceanisphaera sp. AMac2203 0 1903694 139 genus 43947 834 2 Tolumonas 0 1 1 43948 833 1 0 Tolumonas auensis species genus 0 Zobellella 2 708 347533 4 1 species Zobellella denitrificans 0 1 347534 704 1 4 Oceanimonas 0 2 129577 943 genus 0 1 939 2636315 no rank species 511062 939 Oceanimonas sp. GK1 0 1 1 756 642 11940 0 Aeromonas 18 genus 645 775 0 Aeromonas salmonicida 1 species 1 0 Aeromonas veronii 1606 654 species 1 Aeromonas media 0 651 311 species no rank 257493 3391 0 8 species 1636607 347 1 0 Aeromonas sp. ASNIH2 460 1636609 1 0 Aeromonas sp. ASNIH4 species species Aeromonas sp. ASNIH7 0 1 322 1920107 2033032 478 1 Aeromonas sp. CA23 0 species species 0 Aeromonas sp. CU5 1 2033033 517 species 606 1758179 1 0 Aeromonas sp. ASNIH5 species 1636606 283 0 Aeromonas sp. ASNIH1 1 0 Aeromonas sp. ASNIH3 1 378 1636608 species species 1 0 Aeromonas schubertii 652 643 species 948519 634 1 0 Aeromonas rivipollensis species 1 0 Aeromonas hydrophila 644 2542 species 196024 371 0 Aeromonas dhakensis 1 species 558964 585 0 Aeromonas aquatica 1 species 1 0 Aeromonas caviae 648 326 order 72548 72274 129 Pseudomonadales 0 280 1 family Pseudomonadaceae 0 86 56931 135621 331 1 1849530 383 2 Oblitimonas 0 genus 1 4 species 1 Oblitimonas alkaliphila 0 1697053 379 1 1974 55019 286 Pseudomonas 0 80 genus species group 2 0 136846 3820 species 0 Pseudomonas balearica 1 611 74829 1 0 3209 578833 species subgroup species Pseudomonas stutzeri 0 1 3209 316 species 199 157783 Pseudomonas cremoricolorata 0 1 0 6 136841 6397 species group 545 43263 Pseudomonas alcaligenes 0 1 species 2131 287 0 Pseudomonas aeruginosa 1 species species 0 Pseudomonas citronellolis 1 1007 53408 489 53412 1 Pseudomonas resinovorans 0 species species 1 Pseudomonas mendocina 0 300 1634 species subgroup 0 1 1232139 591 Pseudomonas furukawaii 0 1 1149133 591 species 0 Pseudomonas alkylphenolica 1 237609 264 species Pseudomonas alcaliphila 0 1 489 101564 species 7295 136843 9 0 species group species 0 Pseudomonas mandelii 1 75612 542 species Pseudomonas veronii 0 1 76761 314 species 380021 661 1 Pseudomonas protegens 0 species 0 Pseudomonas trivialis 1 200450 327 species 1 0 Pseudomonas azotoformans 47878 412 76758 325 1 0 Pseudomonas orientalis species species 0 Pseudomonas fluorescens 1 3966 294 47879 454 Pseudomonas corrugata 0 1 species 200451 294 1 0 Pseudomonas poae species 0 Pseudomonas antarctica 1 246 219572 species 196821 11793 30 0 no rank species 1898684 494 1 0 Pseudomonas sp. LPH1 402 1500686 Pseudomonas sp. Os17 0 1 species species 400 1500687 1 0 Pseudomonas sp. St29 species 1 Pseudomonas sp. URMO17WK12:I11 0 562 1283291 species Pseudomonas sp. SWI44 0 1 2083053 348 species 1 0 Pseudomonas sp. NC02 2067572 321 1 0 Pseudomonas sp. SWI36 2083052 435 species species 1 0 Pseudomonas sp. DR 5-09 1534110 378 species 1659194 232 0 Pseudomonas sp. GR 6-02 1 species 0 Pseudomonas sp. UW4 1 422 1207075 Pseudomonas sp. TKP 0 1 1415630 358 species species 274 2018067 1 0 Pseudomonas sp. FDAARGOS_380 1259844 385 0 Pseudomonas sp. FGI182 1 species 1856685 749 1 0 Pseudomonas sp. TCU-HL1 species 652 1611770 1 Pseudomonas sp. MRSN12121 0 species 0 Pseudomonas sp. LH1G9 1 2083055 491 species species 213 1981174 Pseudomonas sp. M30-35 0 1 species 1 Pseudomonas sp. SWI6 0 2083051 316 species 1 Pseudomonas sp. VLB120 0 537 69328 285 1338689 1 Pseudomonas sp. JY-Q 0 species 1028989 428 1 Pseudomonas sp. StFLB209 0 species species 1 Pseudomonas sp. CC6-YY-74 0 320 1930532 0 Pseudomonas sp. PONIH3 1 295 1636610 species 1 Pseudomonas sp. MYb193 0 263 1827300 species 0 Pseudomonas sp. HLS-6 1 2049589 299 species species 0 Pseudomonas sp. LG1D9 1 2083054 306 species 1 Pseudomonas sp. S-6-2 0 427 1931241 581 1294143 1 0 Pseudomonas sp. ATCC 13867 species 1 Pseudomonas sp. XWY-1 0 279 2069256 species 1649877 341 1 Pseudomonas sp. CCOS 191 0 species 491 198620 Pseudomonas koreensis 0 1 species species Pseudomonas versuta 0 1 1788301 368 species 465 65741 Pseudomonas knackmussii 0 1 species 1 Pseudomonas brassicacearum 0 875 930166 289 1583341 0 Pseudomonas cerasi 1 species species 278 216142 0 Pseudomonas rhizosphaerae 1 104087 770 0 Pseudomonas frederiksbergensis 1 species 0 Pseudomonas parafulva 1 570 157782 species 8164 136845 0 6 species group species 447 70775 1 0 Pseudomonas plecoglossicida 0 Pseudomonas monteilii 1 76759 911 species species 0 Pseudomonas putida 1 4903 303 species 47885 444 0 Pseudomonas oryzihabitans 1 829 78327 1 Pseudomonas mosselii 0 species species 47880 630 1 0 Pseudomonas fulva 1 Pseudomonas silesiensis 0 1853130 420 species species group 5962 136849 8 0 species 0 Pseudomonas viridiflava 1 33069 446 2461 251695 1 0 species subgroup species 0 Pseudomonas syringae 1 317 2461 species 251701 750 0 Pseudomonas syringae group genomosp. 3 1 46257 421 1 Pseudomonas avellanae 0 species 251698 1195 2 0 species subgroup species 0 Pseudomonas savastanoi 1 585 29438 Pseudomonas amygdali 0 1 610 47877 species 486 36746 0 Pseudomonas cichorii 1 species 2775504 203 0 1 no rank species 1206777 203 1 Pseudomonas sp. Lz4W 0 136842 2848 0 2 species group 581 296 1 Pseudomonas fragi 0 species 2267 587753 1 0 Pseudomonas chlororaphis species species 1 0 Pseudomonas entomophila 312306 302 species 0 Pseudomonas psychrotolerans 1 237610 500 species 1 0 Pseudomonas lurida 244566 240 351 1198 0 3 subfamily 1 19 Azotobacter 0 3 1198 352 genus 0 Azotobacter vinelandii 1 389 354 species species 353 790 0 Azotobacter chroococcum 1 15337 468 Moraxellaceae 0 42 family 1 28 11 Psychrobacter 0 497 1849 genus 1 8 species Psychrobacter arcticus 0 1 334543 244 1 0 Psychrobacter urativorans 240 45610 species 0 Psychrobacter alimentarius 1 261164 156 species species 330922 144 0 Psychrobacter cryohalolentis 1 1057 196806 6 0 no rank 1 Psychrobacter sp. AntiMn-1 0 1720344 267 species species 1699624 79 1 0 Psychrobacter sp. P11G5 species 100 1699622 1 0 Psychrobacter sp. P2G3 226 349106 1 0 Psychrobacter sp. PRwf-1 species 0 Psychrobacter sp. G 1 166 571800 species species 1 Psychrobacter sp. DAB_AL43B 0 1028416 219 genus 1245 475 5 0 Moraxella 4 1 species 1 Moraxella bovoculi 0 410 386891 391 34062 0 Moraxella osloensis 1 species 480 250 0 Moraxella catarrhalis 1 species 190 29433 0 Moraxella ovis 1 species 94 1 genus 25 Acinetobacter 0 12215 469 species 432 1148157 0 Acinetobacter oleivorans 1 633 756892 1 Acinetobacter indicus 0 species 350 487316 1 0 Acinetobacter soli species 329 40216 1 Acinetobacter radioresistens 0 species 202950 362 0 1 species Acinetobacter sp. ADP1 0 1 62977 362 strain no rank 0 7 196816 2439 2079596 330 1 Acinetobacter sp. SWBY1 0 species Acinetobacter sp. TTH0-4 0 1 1646498 124 species 1 0 Acinetobacter sp. LoGeW2-3 495 1808001 species species 0 Acinetobacter sp. ACNIH1 1 362 1636603 1407071 284 Acinetobacter sp. TGL-Y2 0 1 species species 1608473 569 Acinetobacter sp. NCu2D-2 0 1 species 1758189 275 1 0 Acinetobacter sp. ACNIH2 species Acinetobacter johnsonii 0 1 271 40214 354 106648 1 0 Acinetobacter bereziniae species 1 0 Acinetobacter junii 559 40215 species 519 29430 1 0 Acinetobacter haemolyticus species 380 108981 1 0 Acinetobacter schindleri species species group 4699 909768 0 5 species 1792 470 1 Acinetobacter baumannii 0 species 471 733 1 0 Acinetobacter calcoaceticus 0 Acinetobacter pittii 1 1367 48296 species species Acinetobacter lactucae 0 1 1785128 391 species Acinetobacter nosocomialis 0 1 416 106654 species 602 1324350 Acinetobacter equi 0 1 species Acinetobacter larvae 0 1 1789224 192 8 1 order 487 1934945 Immundisolibacterales 0 4 3 Immundisolibacteraceae 0 1934946 479 family 1 22 genus Immundisolibacter 0 2 1934947 457 5 1 Immundisolibacter cernigliae 0 1 1810504 452 species 1 6 135618 2748 13 Methylococcales 0 order 1 62 2742 403 12 0 Methylococcaceae family genus 1678 416 0 Methylomonas 5 20 1 0 Methylomonas methanica 1 421 304 species species 1 Methylomonas denitrificans 0 558 1538553 433 2608980 1 0 no rank species 433 1727196 Methylomonas sp. DH-1 0 1 1 Methylomonas koyamae 0 363 702114 species 2 1 genus 2 Methylovulum 0 330 762296 0 Methylovulum psychrotolerans 1 328 1704499 species 1 2 Methylococcus 0 2 327 413 genus 0 Methylococcus capsulatus 1 325 414 species genus Methylomicrobium 0 2 39773 345 2 1 species 1 0 Methylomicrobium alcaliphilum 271065 343 no rank 686 33811 0 2 species 0 endosymbiont of unidentified scaly snail isolate Monju 1 437 1248727 species 83406 249 1 0 gamma proteobacterium HdN1 no rank 0 12 118884 2301 clade 237 198346 1 0 0 Candidatus Baumannia cicadellinicola 1 237 186490 species 8 1 genus 1608298 284 2 0 Thiolapillus species 1 0 Thiolapillus brandeum 1076588 276 0 1 344 349742 genus 1543721 344 1 Sedimenticola thiotaurini 0 species Candidatus Thioglobus 0 3 342 655184 genus 1 2 species 0 Candidatus Thioglobus autotrophicus 1 196 1705394 1427364 144 1 Candidatus Thioglobus singularis 0 species 0 4 672 32036 clade 113267 168 1 0 Bathymodiolus septemdierum thioautotrophic gill symbiont species 1 1 Candidatus Ruthia 0 2 1541743 180 genus 0 Candidatus Ruthia magnifica 1 179 386487 species 324 410330 0 Calyptogena okutanii thioautotrophic gill symbiont 1 species 1 0 422 1524249 genus species 422 1249552 1 0 Pseudohongiella spirulinae order 0 3 809 1240482 809 1240483 0 Orbaceae 3 family 1 2 0 1 257 1335631 genus 0 Frischella perrara 1 1267021 257 species genus 0 1 550 1193503 1 Gilliamella apicola 0 550 1196095 species 12 1 order 19 0 Legionellales 4573 118969 444 4198 13 0 family genus 269 465 0 1 species Tatlockia micdadei 0 1 451 269 1 25 445 3929 12 Legionella 0 genus 446 1127 1 Legionella pneumophila 0 species 123 452 Legionella spiritensis 0 1 species species Legionella sainthelensi 0 1 311 28087 280 45067 1 0 Legionella lansingensis species species 1 0 Legionella fallonii 518 96230 species Legionella endosymbiont of Polyplax serrata 0 1 2005262 109 198 1867846 1 Legionella clemsonensis 0 species 1 Legionella hackeliae 0 262 449 species 0 Legionella oakridgensis 1 29423 401 species Legionella longbeachae 0 1 223 450 species species 1 Legionella waltersii 0 352 66969 35 1 family 5 Coxiellaceae 0 363 118968 134284 78 0 1 no rank 78 1592897 1 Coxiella-like endosymbiont 0 species 1 1 genus 776 250 0 Coxiella 3 1 Coxiella burnetii 0 777 212 species no rank 37 2676648 1 0 37 325775 1 Coxiella endosymbiont of Amblyomma americanum 0 species 646 1692040 6 0 Acidiferrobacterales order 1 4 1 12 0 Acidiferrobacteraceae 5 642 1692041 family 1 11 1744881 402 0 Sulfuricaulis 2 genus 391 1620215 0 Sulfuricaulis limicola 1 species 5 1 genus 228 1692042 2 Sulfurifustis 0 1675686 223 1 Sulfurifustis variabilis 0 species order 135622 30135 Alteromonadales 0 104 54 1 3 0 1111 267894 family 6 1 genus 3 0 Psychromonas 1111 67572 species 1 0 Psychromonas ingrahamii 357794 796 no rank 0 1 2614957 309 1 Psychromonas sp. CNPT3 0 309 314282 species 267890 8988 25 Shewanellaceae 0 family 1 64 1 128 22 8924 24 Shewanella 0 genus species 271098 311 1 0 Shewanella halifaxensis 1 0 Shewanella frigidimarina 294 56812 species 359303 373 1 0 Shewanella loihica species 1 0 Shewanella woodyi 60961 278 species species 1 Shewanella oneidensis 0 70863 359 species 1 0 Shewanella sediminis 271097 232 229 70864 1 Shewanella pealeana 0 species 1 0 Shewanella putrefaciens 359 24 species species 335 260364 1 0 Shewanella marisflavi 60217 378 1 Shewanella violacea 0 species 227 93973 1 0 Shewanella japonica species no rank 0 6 2315 196818 species 1 Shewanella sp. Pdp11 0 2059264 409 Shewanella sp. MR-7 0 1 60481 552 species species 446 60480 1 0 Shewanella sp. MR-4 Shewanella sp. ANA-3 0 1 94122 533 species 174 2029986 0 Shewanella sp. WE21 1 species 1 0 Shewanella sp. W3-18-1 201 351745 species species 0 Shewanella piezotolerans 1 238 404011 species 0 Shewanella baltica 1 873 62322 192073 239 Shewanella denitrificans 0 1 species 225848 609 1 0 Shewanella psychrophila species species 2018305 508 0 Shewanella bicestrii 1 1 0 Shewanella amazonensis 639 60478 species 1 4 Ferrimonadaceae 0 3 267892 581 family genus 0 Ferrimonas 2 44011 577 3 1 species 574 44012 Ferrimonas balearica 0 1 1 61 72275 9341 Alteromonadaceae 0 29 family genus 261825 220 Agarivorans 0 2 20 1 Agarivorans gilvus 0 1 680279 200 species 2 1 genus Paraglaciecola 0 2 1621534 230 228 326544 Paraglaciecola psychrophila 0 1 species 1 9 448 1751872 2 0 Lacimicrobium genus 1 Lacimicrobium alkaliphilum 0 439 1526571 species genus 3461 2742 0 Marinobacter 10 24 1 species 1 Marinobacter adhaerens 0 1033846 325 Marinobacter salarius 0 1 381 1420917 species no rank 83889 1203 0 3 1749259 469 Marinobacter sp. LQ44 0 1 species species 0 Marinobacter sp. BSs20148 1 490759 291 1671721 443 0 Marinobacter sp. CP1 1 species species 1 Marinobacter psychrophilus 0 330734 288 species 1420916 220 1 0 Marinobacter similis species 358 1874317 Marinobacter salinus 0 1 662 2743 1 0 Marinobacter hydrocarbonoclasticus species genus 10 0 Alteromonas 4485 226 21 1 0 Alteromonas macleodii 1 690 28108 species 1 Alteromonas mediterranea 0 626 314275 species Alteromonas australica 0 1 317 589873 species 517 715451 1 Alteromonas naphthalenivorans 0 species no rank 0 3 984 2614992 240 1917158 0 Alteromonas sp. RW2A1 1 species species 1 Alteromonas sp. MB-3u-76 0 172 2058133 species 1 Alteromonas sp. Mac1 0 572 1777491 species 233316 768 0 Alteromonas stellipolaris 1 1 Alteromonas addita 0 287094 562 species genus 0 2 89404 436 0 1 218 2618684 no rank species 983545 218 0 Glaciecola sp. 4H-3-7+YE-5 1 species 300231 218 Glaciecola nitratireducens 0 1 family Moritellaceae 0 3 267891 439 2 1 Moritella 0 2 58050 437 genus 1 9 species 80854 428 1 Moritella viscosa 0 1 1 family 0 Idiomarinaceae 6 762 267893 5 0 Idiomarina 761 135575 genus 1 16 species 221 135577 Idiomarina loihiensis 0 1 446 2614829 2 0 no rank species 1 Idiomarina sp. X4 0 195 2055892 Idiomarina sp. OT37-5b 0 1 251 2100422 species species 1096243 78 1 0 Idiomarina piscisalsi 1 10 25 Pseudoalteromonadaceae 0 6744 267888 family 6734 53246 24 Pseudoalteromonas 0 genus 1 101 223 394751 1 Pseudoalteromonas arctica 0 species species 161398 234 1 0 Pseudoalteromonas phenolica species Pseudoalteromonas haloplanktis 0 1 228 289 species 166935 221 0 Pseudoalteromonas translucida 1 species 191 176102 1 0 Pseudoalteromonas agarivorans 275 314281 0 Pseudoalteromonas tunicata 1 species species Pseudoalteromonas piratica 0 1 1348114 199 species 43658 323 0 Pseudoalteromonas rubra 1 1 Pseudoalteromonas luteoviolacea 0 363 43657 species species 267375 286 0 Pseudoalteromonas marina 1 1 Pseudoalteromonas nigrifaciens 0 216 28109 species species Pseudoalteromonas piscicida 0 1 494 43662 288 308 1 0 Pseudoalteromonas atlantica species 0 5 194690 1576 no rank 1761891 174 1 Pseudoalteromonas sp. 13-15 0 species 1514074 298 0 Pseudoalteromonas sp. NC201 1 species species 247 234831 1 0 Pseudoalteromonas sp. SM9913 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 1 1720343 361 species species 1 0 Pseudoalteromonas sp. Bsw20308 283699 496 species 1 Pseudoalteromonas espejiana 0 28107 137 Pseudoalteromonas spongiae 0 1 298657 377 species species 43659 259 1 0 Pseudoalteromonas tetraodonis species 329 247523 1 Pseudoalteromonas aliena 0 Pseudoalteromonas issachenkonii 0 1 152297 333 species 36 1 family 2115 267889 0 Colwelliaceae 9 1 1 2 0 Thalassotalea 361 1518149 genus species Thalassotalea crassostreae 0 1 1763536 360 6 1 genus 1718 28228 0 Colwellia 6 0 3 196834 905 no rank species 136 1816219 Colwellia sp. PAMC 21821 0 1 species 58049 324 1 Colwellia sp. MT41 0 species Colwellia sp. PAMC 20917 0 1 445 1816218 28229 268 0 Colwellia psychrerythraea 1 species 1967665 539 0 Colwellia beringensis 1 species order 4632 1706369 Cellvibrionales 0 28 19 1 10 1 family 13 0 Cellvibrionaceae 2570 1706371 genus 0 Simiduia 2 447467 331 9 1 species 322 447471 Simiduia agarivorans 0 1 1 1 genus 2425 196 Teredinibacter 0 2 species 2426 195 Teredinibacter turnerae 0 1 1 1 genus 310 316625 Saccharophagus 0 2 309 86304 1 0 Saccharophagus degradans species 1 1 genus 2 Agarilytica 0 453 2036021 species 1 0 Agarilytica rhodophyticola 452 1737490 genus 1270 10 0 Cellvibrio 4 21 1 2624793 952 2 0 no rank species 1945512 363 1 Cellvibrio sp. PSBB023 0 species 1987723 589 0 Cellvibrio sp. PSBB006 1 155077 297 0 Cellvibrio japonicus 1 species 1 4 1004 1706373 Microbulbiferaceae 0 5 family 8 1 genus 0 Microbulbifer 4 48073 1000 1 Microbulbifer aggregans 0 1769779 408 species species Microbulbifer thermotolerans 0 1 252514 347 species 0 Microbulbifer agarilyticus 1 237 260552 family Spongiibacteraceae 0 5 1706375 599 2 1 0 1 1434050 146 genus species 1470434 146 Zhongshania aliphaticivorans 0 1 7 1 genus 630749 86 2 Spongiibacter 0 1 0 2631504 79 no rank species 0 Spongiibacter sp. IMCC21906 1 1620392 79 0 1 1084558 365 genus 716816 365 0 Oceanicoccus sagamiensis 1 species 1 5 440 1706372 0 Halieaceae 4 family 6 1 genus 435 1217416 3 0 Halioglobus 1 0 Halioglobus japonicus 930805 186 species species Halioglobus pacificus 0 1 243 930806 205 1 order 15198 135619 64 Oceanospirillales 0 1 18 0 Oceanospirillaceae 9 2570 135620 family genus 0 1 199 1537406 species 199 1249553 0 Bacterioplanes sanyensis 1 genus 3 0 1387 28253 no rank 1 0 196814 439 400668 439 1 Marinomonas sp. MWYL1 0 species species 936476 446 1 Marinomonas posidonica 0 119864 502 1 0 Marinomonas mediterranea species genus 187492 230 0 1 0 Thalassolituus oleivorans 1 230 187493 species genus 299 188907 1 0 299 188908 0 Oleispira antarctica 1 species 1 12 0 Marinobacterium 2 48075 437 genus species 425 1821621 0 Marinobacterium aestuarii 1 0 2 191033 516 family 1 1 516 141450 0 Oleiphilus 2 genus species 0 Oleiphilus messinensis 1 515 141451 2 1 family Kangiellaceae 0 6 1920240 879 1 6 5 Kangiella 0 261963 877 genus species 1 0 Kangiella profundi 1561924 267 species 1144748 225 1 0 Kangiella sediminilitoris species 1 0 Kangiella koreensis 261964 231 species 148 914150 Kangiella geojedonensis 0 1 0 2 353 224379 family 353 158481 2 Hahella 0 genus 1 1 species 352 158327 Hahella chejuensis 0 1 family 0 Halomonadaceae 30 7699 28256 67 1 2 1 genus 2 Chromohalobacter 0 385 42054 383 158080 Chromohalobacter salexigens 0 1 species 476 376488 Halotalea 0 2 genus 1 11 species 0 Halotalea alkalilenta 1 465 376489 3 0 Kushneria 504090 875 genus 1 4 481 698828 1 Kushneria konosiri 0 species Kushneria marisflavi 0 1 157779 390 species 0 3 114403 37 no rank genus 18 1495768 0 1 1495769 18 0 Candidatus Evansia muelleri 1 species genus 235572 15 0 1 species 1 Candidatus Portiera aleyrodidarum 0 91844 15 1 0 4 114185 genus species 1 0 Candidatus Carsonella ruddii 4 114186 genus 0 Halomonas 15 2745 5042 73 1 species 617 475662 1 Halomonas beimenensis 0 species 0 Halomonas hydrothermalis 1 331 115561 447 507626 1 Halomonas chromatireducens 0 species 1897729 597 1 0 Halomonas aestuarii species 1 0 Halomonas campaniensis 213554 155 species species 0 Halomonas huangheensis 1 1178482 302 no rank 2520 2609666 0 8 1118153 250 0 Halomonas sp. GFAJ-1 1 species species 1 Halomonas sp. 'Soap Lake #7' 0 353 1962264 species 1610576 259 1 0 Halomonas sp. R57-5 142 1971364 1 Halomonas sp. GT 0 species species Halomonas sp. KO116 0 1 358 1504981 1883416 396 0 Halomonas sp. 1513 1 species 1 Halomonas sp. 'Soap Lake #6' 0 353 1949203 species 2136172 409 0 Halomonas sp. SF2003 1 species genus 404432 391 2 Salinicola 0 1 1 Salinicola tamaricis 0 1 1771309 390 species 2 0 Cobetia 426 204286 genus 1 3 28258 423 1 Cobetia marina 0 species family Saccharospirillaceae 0 5 604 255527 3 1 Gynuella 0 2 1445504 422 genus 1 1 species 421 1445505 1 Gynuella sunshinyii 0 genus 2 0 Reinekea 230494 179 1 1 species Reinekea forsetii 0 1 178 1336806 10 1 family Alcanivoracaceae 0 9 2372 224372 1 12 Alcanivorax 0 6 59753 1996 genus 2638842 394 0 1 no rank 1 0 Alcanivorax sp. NBRC 101098 394 1113728 species 1306787 424 0 Alcanivorax pacificus 1 species 1 0 Alcanivorax dieselolei 285091 385 species 0 Alcanivorax borkumensis 1 261 59754 species species 1094342 520 Alcanivorax xenomutans 0 1 genus 366 2025617 2 Ketobacter 0 1 1 1 Ketobacter alkanivorans 0 365 1917421 species 1 86 0 Chromatiales 51 10519 135613 order 451214 670 0 2 no rank genus 0 Thiohalobacter 2 670 1273155 11 1 1 Thiohalobacter thiocyanaticus 0 659 585455 species 8 1 family Halothiobacillaceae 0 4 255526 614 1 1 3 0 Halothiobacillus 109262 606 genus no rank 1 0 2636392 307 species 1 0 Halothiobacillus sp. LS2 1860122 307 1 0 Halothiobacillus neapolitanus 927 298 species Wenzhouxiangellaceae 0 3 352 1676141 family 1 5 0 Wenzhouxiangella 2 347 1676142 genus 1 23 species 324 1579979 Wenzhouxiangella marina 0 1 family 72276 3635 Ectothiorhodospiraceae 0 18 35 1 275 1335745 3 0 Spiribacter genus 1 2 species 1 0 Spiribacter salinus 1335746 89 species 0 Spiribacter curvatus 1 184 1335757 1 1 2 0 Halorhodospira 85108 380 genus 1053 379 1 0 Halorhodospira halophila species 3 1 genus 2 Alkalilimnicola 0 133193 403 351052 400 0 Alkalilimnicola ehrlichii 1 species 6 Thioalkalivibrio 0 106633 1738 genus 1 33 186931 223 1 Thioalkalivibrio nitratireducens 0 species 567 1033854 0 Thioalkalivibrio sulfidiphilus 1 species Thioalkalivibrio versutus 0 1 106634 304 species no rank 325 2621013 0 1 Thioalkalivibrio sp. K90mix 0 1 396595 325 species 108010 286 1 0 Thioalkalivibrio paradoxus species 1 1 genus 2 Ectothiorhodospira 0 1051 564 no rank 2684909 563 1 0 species 563 1442136 1 Ectothiorhodospira sp. BSL-9 0 1 3 1765964 240 Acidihalobacter 0 2 genus 237 160660 Acidihalobacter prosperus 0 1 species 1 38 4285 1046 Chromatiaceae 0 17 family genus 1980513 78 0 1 1630141 78 1 0 Candidatus Nitrosoglobus terrae species 82569 477 1 0 no rank 477 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 1 species genus 2 Thiodictyon 0 53392 957 5 1 species 952 1166950 0 Candidatus Thiodictyon syntrophicum 1 genus Thiocystis 0 2 13724 449 8 1 species 1 Thiocystis violascens 0 73141 441 2 1 genus 0 Allochromatium 2 509 85072 species 507 1049 1 Allochromatium vinosum 0 2 1 genus 853 1227 4 0 Nitrosococcus species 1 Nitrosococcus watsonii 0 473531 357 0 Nitrosococcus halophilus 1 133539 317 species 1 0 Nitrosococcus oceani 1229 177 species genus 491 85076 0 Marichromatium 2 7 1 0 Marichromatium purpuratum 1 484 37487 species 156885 433 Thioflavicoccus 0 2 genus 1 2 species 1 0 Thioflavicoccus mobilis 431 80679 2 1 family 3 0 Granulosicoccaceae 449719 704 1 1 genus 2 Granulosicoccus 0 437504 702 1 0 Granulosicoccus antarcticus 701 437505 species 0 Woeseiaceae 3 1738654 173 family 1 1 genus 2 Woeseia 0 1738655 172 4 1 species Woeseia oceani 0 1 168 1548547 4 1 order 72273 7874 32 Thiotrichales 0 4 1 family 34064 5108 14 0 Francisellaceae 4972 262 Francisella 0 12 genus 1 8 species Francisella sp. TX077310 0 1 462 573570 species 1 Francisella sp. CA97-1460 0 286 1542390 no rank 598 2610885 2 0 Francisella sp. FSC1006 0 1 311 1547445 species 1 Francisella sp. MA067296 0 287 475375 species Francisella noatunensis 0 1 472 657445 species species 263 891 0 Francisella tularensis 1 280 622488 1 Francisella hispaniensis 0 species 0 Francisella persica 1 245 954 species species 1 0 Francisella halioticida 365 549298 28110 1107 0 Francisella philomiragia 1 species species 573569 258 1 0 Francisella sp. TX077308 1 0 132 1869285 genus 594679 132 1 Allofrancisella guangzhouensis 0 species family 135617 529 4 0 Thiotrichaceae 11 1 genus 1 0 201 40751 201 40754 Thioploca ingrica 0 1 species 1 1 genus 1021 317 Beggiatoa 0 2 288004 316 1 0 Beggiatoa leptomitoformis species 1 70 2233 135616 13 0 Piscirickettsiaceae family genus 4 0 Cycloclasticus 486 34067 2 1 0 2 2621467 331 no rank species 0 Cycloclasticus sp. PY97N 1 728003 146 385025 185 0 Cycloclasticus sp. P1 1 species species 0 Cycloclasticus zancles 1 153 1329899 1 1 genus 2 Hydrogenovibrio 0 28884 275 274 39765 0 Hydrogenovibrio crunogenus 1 species 0 2 40222 624 genus 1 0 Methylophaga frappieri 214 754477 species species 0 Methylophaga nitratireducenticrescens 1 754476 410 2 0 353 933 genus Thiomicrospira cyclica 0 1 233 147268 species 92245 120 1 0 Thiomicrospira aerophila species 1 1 2 Piscirickettsia 0 425 1237 genus species 1238 424 Piscirickettsia salmonis 0 1 3 Nevskiales 0 294 1775403 order 1 1 293 2689614 0 2 family 2 Steroidobacter 0 469322 293 genus 1 2 0 Steroidobacter denitrificans 1 291 465721 species 0 Xanthomonadales 52 135614 23053 order 1 217 168 1 family 19181 32033 37 Xanthomonadaceae 0 genus 1 0 527 2370 527 2371 Xylella fastidiosa 0 1 species 1 270 6450 40323 9 Stenotrophomonas 0 genus Stenotrophomonas nitritireducens 0 1 83617 473 species no rank 196198 1731 0 4 1 0 Stenotrophomonas sp. LM091 584 1904944 species species Stenotrophomonas sp. MYb57 0 1 386 1827305 1 0 Stenotrophomonas sp. KCTC 12332 396 1793721 species 365 2005046 1 Stenotrophomonas sp. WZN-1 0 species species 649 128780 Stenotrophomonas acidaminiphila 0 1 species group 2805 995085 0 1 40324 2805 1 Stenotrophomonas maltophilia 0 species 522 216778 Stenotrophomonas rhizophila 0 1 species genus 2286 68 0 Lysobacter 5 26 1 1 0 Lysobacter gummosus 262324 576 species species 1 0 Lysobacter enzymogenes 568 69 species Lysobacter antibioticus 0 1 497 84531 species 619 435897 Lysobacter capsici 0 1 genus 3 Pseudoxanthomonas 0 1251 83618 3 1 species 415229 307 1 Pseudoxanthomonas spadix 0 species 941 314722 0 Pseudoxanthomonas suwonensis 1 1 422 338 8186 17 0 Xanthomonas genus 537 56454 1 Xanthomonas hortorum 0 species 0 Xanthomonas perforans 1 442694 370 species 1 Xanthomonas campestris 0 918 339 species 831 347 0 Xanthomonas oryzae 1 species species group 0 2 1808 643453 species 492 366648 0 Xanthomonas fuscans 1 species 0 Xanthomonas citri 1 346 1316 species 1 0 Xanthomonas translucens 343 630 1 0 Xanthomonas alfalfae 366650 225 species species 1985254 213 0 Xanthomonas phaseoli 1 Xanthomonas fragariae 0 1 48664 228 species species 402 56458 1 Xanthomonas sacchari 0 species 53413 245 0 Xanthomonas axonopodis 1 563 56460 1 Xanthomonas vesicatoria 0 species species 1 0 Xanthomonas euvesicatoria 219 456327 species 216 29447 0 Xanthomonas albilineans 1 359 56459 1 0 Xanthomonas vasicola species 83614 313 0 1 genus 1 Luteimonas sp. 100111 0 2006110 313 species 1 127 1775411 3655 0 Rhodanobacteraceae 14 family 2 0 Frateuria 381 70411 genus 1 3 species 81475 378 0 Frateuria aurantia 1 genus 242605 391 2 0 Luteibacter 2 1 species 1 0 Luteibacter rhizovicinus 389 242606 genus 2 Dokdonella 0 713 323413 8 1 1 Dokdonella koreensis 0 705 323415 species genus 1374 231454 4 Dyella 0 20 1 species 394 1379159 1 Dyella jiangningensis 0 species 231455 470 Dyella japonica 0 1 species Dyella thiooxydans 0 1 490 445710 1 9 451 75309 2 Rhodanobacter 0 genus 442 666685 1 0 Rhodanobacter denitrificans species 1 0 218 2233801 genus 218 2021234 1 0 Xanthomonadales bacterium D13 species 1 11 29 0 Pasteurellales 135625 41234 order 712 41223 28 Pasteurellaceae 0 family 1 101 genus 476528 1332 0 1 species 47735 1332 1 Bibersteinia trehalosi 0 75984 1959 0 Mannheimia 4 genus 1 18 no rank 1 0 2645054 339 Mannheimia sp. USDA-ARS-USMARC-1261 0 1 339 1432056 species species 1 Mannheimia varigena 0 85404 825 species 1 Mannheimia haemolytica 0 777 75985 genus 697331 740 0 1 [Mannheimia] succiniciproducens 0 1 740 157673 species genus 416916 2142 3 0 Aggregatibacter 3 1 species 731 714 Aggregatibacter actinomycetemcomitans 0 1 species 1408 732 0 Aggregatibacter aphrophilus 1 29570 724 6 Haemophilus 0 genus 1 35 1470 249188 1 Haemophilus pittmaniae 0 species no rank 1 0 789 2609962 1 Haemophilus sp. oral taxon 036 0 712310 789 species 24387 729 0 Haemophilus parainfluenzae 1 species species 730 572 1 0 [Haemophilus] ducreyi 2317 727 1 Haemophilus influenzae 0 species genus 3 0 Pasteurella 745 1366 1 1 species 0 Pasteurella dagmatis 1 296 754 1 Pasteurella multocida 0 1069 747 species genus Gallibacterium 0 2 155493 666 1 1 750 665 Gallibacterium anatis 0 1 species genus 1 0 2094023 1067 species 738 1067 1 0 Glaesserella parasuis 1 0 668 214906 genus 1 Histophilus somni 0 668 731 species 0 Actinobacillus 5 1612 713 genus 1 16 Actinobacillus suis 0 1 716 437 species species 500 715 Actinobacillus pleuropneumoniae 0 1 species 244 67854 1 0 Actinobacillus succinogenes species 415 718 1 0 Actinobacillus equuli order 135615 138 0 2 family 868 138 0 2 2 1 genus 138 869 2 Dichelobacter 0 species 870 136 Dichelobacter nodosus 0 1 order 91347 126437 Enterobacterales 0 241 494 1 57 1 family 1903411 21440 0 Yersiniaceae 39 0 Rouxiella 1 8 1565532 genus 2 1 genus Chania 0 2 1745211 524 522 1639108 1 0 Chania multitudinisentens species 0 Yersinia 13 629 6506 genus 1 88 630 1801 Yersinia enterocolitica 0 1 species 1 0 Yersinia ruckeri 29486 499 species species group 0 3 1649845 792 367190 302 1 0 Yersinia similis species species 0 Yersinia pestis 1 632 187 species 633 303 1 Yersinia pseudotuberculosis 0 1 0 Yersinia intermedia 631 354 species 29483 468 Yersinia aldovae 0 1 species 323 29485 1 0 Yersinia rohdei species Yersinia frederiksenii 0 1 29484 1159 species 0 Yersinia kristensenii 1 404 28152 species 1 0 2653513 347 no rank 1 0 Yersinia sp. FDAARGOS_228 347 1839800 species species Yersinia aleksiciae 0 1 271 263819 11759 613 16 0 Serratia genus 1 550 82996 1061 Serratia plymuthica 0 1 species species 1073 47917 1 Serratia fonticola 0 species 1 0 Serratia proteamaculans 587 28151 species 355 614 Serratia liquefaciens 0 1 no rank 2647522 4014 8 0 species 363 768490 0 Serratia sp. AS12 1 species 1758196 439 1 0 Serratia sp. SSNIH1 1 0 Serratia sp. ATCC 39006 104623 716 species species 1 Serratia sp. MYb239 0 2033438 557 1 0 Serratia sp. FGI94 505 671990 species species 488142 572 1 0 Serratia sp. SCBI species 1 Serratia sp. FS14 0 1327989 500 0 Serratia sp. AS13 1 362 768493 species species 781 61651 1 Serratia ficaria 0 species 1 Serratia rubidaea 0 667 61652 species Serratia marcescens 0 1 615 2671 genus 4 Rahnella 0 34037 1799 40 1 1 0 Rahnella aquatilis 667 34038 species 0 2 1092 2635087 no rank species 423 1805933 0 Rouxiella sp. ERMR1:05 1 669 741091 1 0 Rahnella sp. Y9602 species 2 1 genus 929812 787 2 0 Gibbsiella 1 Gibbsiella quercinecans 0 929813 785 species family 14 0 Hafniaceae 5029 1903412 14 1 genus Obesumbacterium 0 2 82982 452 15 1 species 0 Obesumbacterium proteus 1 82983 437 genus 995 568 3 Hafnia 0 12 1 species 1 0 Hafnia alvei 569 795 no rank 1 0 2621980 188 1848580 188 1 0 Hafnia sp. CBA7124 species 1 150 3568 635 8 Edwardsiella 0 genus 517 1263550 0 Edwardsiella piscicida 1 species no rank 766 2676541 2 0 320 1650654 1 Edwardsiella sp. LADL05-105 0 species species 1 Edwardsiella sp. EA181011 0 446 1578828 species Edwardsiella hoshinae 0 1 377 93378 0 Edwardsiella ictaluri 1 67780 518 species species 918 636 0 Edwardsiella tarda 1 Edwardsiella anguillarum 0 1 322 1821960 species family 11982 1903409 0 Erwiniaceae 26 45 1 1 0 51228 143 genus 1 Wigglesworthia glossinidia 0 143 51229 species 1 248 5562 53335 11 Pantoea 0 genus 3 0 2630326 1637 no rank species 1 Pantoea sp. PSNIH2 0 1484157 589 species 592316 639 Pantoea sp. At-9b 0 1 409 1484158 1 Pantoea sp. PSNIH1 0 species 470934 894 Pantoea vagans 0 1 species 0 Pantoea ananatis 1 649 553 species 1 Candidatus Pantoea carbekii 0 1235990 160 species species 336 1891675 0 Pantoea alhagi 1 species group 1654067 979 1 0 species 0 Pantoea agglomerans 1 549 979 1 Pantoea rwandensis 0 383 1076550 species species 0 Pantoea stewartii 1 66269 276 0 2 1051 2100764 genus species 665914 547 Pantoea gaviniae 0 1 504 665913 1 0 Pantoea calida species Tatumella 0 2 595 82986 genus 1 16 579 53336 1 Tatumella citrea 0 species 1 0 1603 32199 genus species 1603 9 1 Buchnera aphidicola 0 83 1 genus 551 2983 Erwinia 0 8 species 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 218 1922217 species 1619313 417 1 0 Erwinia gerundensis no rank 1 0 493 2622719 215689 493 Erwinia sp. Ejp617 0 1 species species 0 Erwinia amylovora 1 552 286 species 338565 336 Erwinia tasmaniensis 0 1 182337 760 1 0 Erwinia billingiae species species 390 79967 1 Erwinia pyrifoliae 0 0 Morganellaceae 21 1903414 7427 family 1 57 genus 1459 586 4 0 Providencia 6 1 species 587 577 0 Providencia rettgeri 1 1 0 Providencia stuartii 588 604 species species 272 126385 Providencia alcalifaciens 0 1 0 1 637 47 genus species 47 634113 1 Arsenophonus symbiont of Lipoptena fortisetosa 0 1 23 849 581 2 0 Morganella genus Morganella morganii 0 1 826 582 species 17 1 genus 1262 29487 Photorhabdus 0 4 species 0 Photorhabdus temperata 1 574560 363 0 Photorhabdus asymbiotica 1 291112 581 species species 29488 301 1 Photorhabdus luminescens 0 1 15 6 0 Xenorhabdus 2188 626 genus species 0 Xenorhabdus poinarii 1 40577 232 species 351679 180 0 Xenorhabdus hominickii 1 Xenorhabdus nematophila 0 1 561 628 species species 351671 637 Xenorhabdus doucetiae 0 1 species 1 0 Xenorhabdus bovienii 40576 563 genus 0 Proteus 3 1565 583 29 1 species 1 0 Proteus vulgaris 776 585 760 584 1 Proteus mirabilis 0 species 1 553 Enterobacteriaceae 0 116 69713 543 family 1 1 genus 1335483 372 2 0 Shimwellia species Shimwellia blattae 0 1 371 563 8 0 Cronobacter 3364 413496 genus 1 90 28141 879 0 Cronobacter sakazakii 1 species 1 0 Cronobacter turicensis 413502 289 species species 712 413501 Cronobacter muytjensii 0 1 species 413 413497 0 Cronobacter dublinensis 1 0 Cronobacter malonaticus 1 387 413503 species 1 Cronobacter universalis 0 535744 305 species Cronobacter condimenti 0 1 1163710 289 species 620 1426 0 Shigella 4 genus 1 50 no rank 2629414 503 1 0 species Shigella sp. PAMC 28760 0 1 1813821 503 622 534 0 Shigella dysenteriae 1 species species 1 Shigella flexneri 0 339 623 genus 409304 121 0 1 121 168169 1 Candidatus Ishikawaella capsulata 0 species no rank 0 16 1405 191675 16 0 84563 1405 clade 0 1 55 199891 clade 0 secondary endosymbiont of Trabutina mannipara 1 55 1835721 species 146507 310 3 0 clade 0 secondary endosymbiont of Ctenarytaina eucalypti 1 1199245 129 species genus 0 1 139 568987 138072 139 1 0 Candidatus Hamiltonella defensa species 42 134287 0 secondary endosymbiont of Heteropsylla cubana 1 species 1 0 153 1682492 genus 1 Candidatus Tachikawaea gelatinosa 0 1410383 153 species genus 2 0 Candidatus Hoaglandella 35 1906659 1 1 species 1778263 34 Candidatus Hoaglandella endobia 0 1 1906660 84 1 0 genus 84 1778264 1 Candidatus Mikella endobia 0 species genus 1 0 1906657 114 species 0 Candidatus Doolittlea endobia 1 1778262 114 genus 1 0 198 1906661 species 198 1070130 1 Candidatus Gullanella endobia 0 0 6 456 84564 clade genus 6 0 456 203804 no rank 711328 114 0 2 1505597 55 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 1 1505596 59 species species 92 203907 1 0 Candidatus Blochmannia floridanus 113 251535 1 0 Candidatus Blochmannia vafer species 0 Candidatus Blochmannia pennsylvanicus 1 62 101534 species 251542 75 1 Candidatus Blochmannia chromaiodes 0 species 437 1 genus 0 Klebsiella 10 570 11483 503 2026240 1 Klebsiella quasivariicola 0 species species 1 Klebsiella aerogenes 0 1000 548 1463165 636 1 0 Klebsiella quasipneumoniae species species 2173 571 1 Klebsiella oxytoca 0 1 0 Klebsiella michiganensis 1043 1134687 species no rank 2608929 1275 0 2 1 0 Klebsiella sp. M5al 1934254 752 species Klebsiella sp. LTGPAF-6F 0 1 1905288 523 species 1 Klebsiella variicola 0 931 244366 species species 1 0 Klebsiella pneumoniae 573 3485 0 Cedecea 2 1810 158483 genus 1 4 1806 158822 Cedecea neteri 0 1 species genus 22 1048757 Candidatus Moranella 0 2 2 1 species 20 1048758 1 0 Candidatus Moranella endobia 7 1 genus 0 Pluralibacter 3 1330546 1298 1 0 Pluralibacter gergoviae 690 61647 species 1334193 601 [Enterobacter] lignolyticus 0 1 species genus 12144 544 Citrobacter 0 14 379 1 0 2 2644389 968 no rank 1 Citrobacter sp. CFNIH10 0 381 1920110 species species 1702170 587 1 0 Citrobacter sp. FDAARGOS_156 1244 35703 1 0 Citrobacter amalonaticus species species group 8075 1344959 0 7 57706 655 1 0 Citrobacter braakii species 2077148 633 0 Citrobacter freundii complex sp. CFNIH4 1 species 1 0 Citrobacter freundii complex sp. CFNIH3 462 2077147 species species 1 Citrobacter freundii complex sp. CFNIH2 0 442 2066049 species 2077149 1431 Citrobacter freundii complex sp. CFNIH9 0 1 species 1 0 Citrobacter werkmanii 67827 793 Citrobacter freundii 0 1 546 3659 species 593 67824 1 0 Citrobacter farmeri species 410 67825 Citrobacter rodentium 0 1 species 1 Citrobacter koseri 0 475 545 species 8159 561 5 Escherichia 0 genus 1 35 species 1499973 478 Escherichia marmotae 0 1 species Escherichia albertii 0 1 208962 1003 species 6200 562 Escherichia coli 0 1 species 1 0 Escherichia fergusonii 564 443 1 66 0 Leclercia 4 1682 83654 genus 1026 2627398 0 2 no rank species Leclercia sp. LSNIH1 0 1 394 1920114 species 632 1920116 1 0 Leclercia sp. LSNIH3 1 0 Leclercia adecarboxylata 590 83655 species 1 32 2198 160674 Raoultella 0 3 genus species 1637 54291 1 Raoultella ornithinolytica 0 1 Raoultella planticola 0 529 575 species genus 0 1 401618 84 401619 84 1 0 Candidatus Riesia pediculicola species 574 1 genus 0 Enterobacter 22 12582 547 0 12 8841 354276 species group species 266 299767 1 Enterobacter ludwigii 0 69218 462 Enterobacter cancerogenus 0 1 species 1564 158836 Enterobacter hormaechei 0 3 species 1 920 subspecies 1 0 Enterobacter cloacae complex 'Hoffmann cluster III' 412 1812934 subspecies 1296536 232 Enterobacter xiangfangensis 0 1 884 2757714 3 0 no rank species 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 237 2077137 379 1915310 Enterobacter cloacae complex sp. ECNIH7 0 1 species species Enterobacter cloacae complex bacterium 0 1 268 2027919 species 1 0 Enterobacter cloacae 550 3300 1812935 343 1 0 Enterobacter cloacae complex 'Hoffmann cluster IV' species 360 208224 1 Enterobacter kobei 0 species species 1 Enterobacter asburiae 0 1662 61645 9 0 3167 2608935 no rank 0 Enterobacter sp. R4-368 1 390 1166130 species species 2051905 315 1 0 Enterobacter sp. CRENT-193 species Enterobacter sp. HK169 0 1 1868135 217 species 367 1827481 1 0 Enterobacter sp. ODB01 species Enterobacter sp. FY-07 0 1 691 1692238 197 1560339 1 0 Enterobacter sp. E20 species 1977566 208 0 Enterobacter sp. Crenshaw 1 species species 0 Enterobacter sp. SA187 1 1914861 479 Enterobacter sp. 638 0 1 399742 303 species 36866 2606 0 5 no rank 891974 448 0 Plautia stali symbiont 1 species species 2066051 363 Enterobacteriaceae bacterium ENNIH1 0 1 1 Enterobacteriaceae bacterium ENNIH3 0 688 1920128 species species 480 1920109 1 Enterobacteriaceae bacterium ENNIH2 0 species 1 0 Enterobacteriaceae bacterium strain FGI 57 627 693444 genus 579 440 1 0 species 0 Kluyvera intermedia 1 61648 440 genus 590 3957 0 Salmonella 3 39 1 1 0 Salmonella bongori 535 54736 species 0 Salmonella enterica 1 28901 3383 species genus 5 Kosakonia 0 1330547 2085 10 1 species Kosakonia cowanii 0 1 417 208223 497725 346 1 Kosakonia oryzae 0 species species 836 283686 1 Kosakonia radicincitans 0 species 476 1158459 0 Kosakonia sacchari 1 Lelliottia 0 4 1330545 1922 genus 1 16 species 69220 490 0 Lelliottia nimipressuralis 1 species 961 61646 1 Lelliottia amnigena 0 species 455 1907578 1 Lelliottia jeotgali 0 19 1 family 8984 1903410 20 0 Pectobacteriaceae 129 1 genus 6 Dickeya 0 204037 3958 species Dickeya fangzhongdai 0 1 568 1778540 517 204038 0 Dickeya dadantii 1 species 1346 204042 1 0 Dickeya zeae species species 1 Dickeya dianthicola 0 496 204039 902 1089444 0 Dickeya solani 1 species 6 0 Pectobacterium 122277 3546 genus 1 72 species 1542 554 1 Pectobacterium carotovorum 0 species Pectobacterium polaris 0 1 2042057 599 species 55208 238 1 0 Pectobacterium wasabiae species 507 1905730 0 Pectobacterium parmentieri 1 species 0 Pectobacterium atrosepticum 1 29471 588 5 0 Sodalis 997 84565 genus 1 20 species 256 63612 0 Sodalis glossinidius 1 species 290 1486991 0 Candidatus Sodalis pierantonius 1 species 1 0 Sodalis endosymbiont of Henestaris halophilus 1929246 83 species 1 Sodalis praecaptivus 0 1239307 348 35 1 genus Brenneria 0 2 464 71655 species 0 Brenneria goodwinii 1 1109412 429 451511 883 2 0 no rank genus 883 702 2 Plesiomonas 0 9 1 703 874 Plesiomonas shigelloides 0 1 species family 0 2 1903416 485 1 1 485 82984 2 0 Pragia genus Pragia fontium 0 1 82985 484 species 769 580370 Zetaproteobacteria 0 6 class 1 2 1 8 580371 767 5 Mariprofundales 0 order 1 4 4 Mariprofundaceae 0 759 580372 family 1 1 Mariprofundus 0 3 755 377315 genus 1 Mariprofundus aestuarium 0 1921086 491 species 1 Mariprofundus ferrinatatus 0 263 1921087 species phylum 200918 7530 0 37 7530 188708 0 Thermotogae 37 class 1 1 order 0 4 617 1643946 family 4 0 1643948 617 genus 651456 361 3 Kosmotoga 0 4 1 species 651457 114 0 Kosmotoga olearia 1 species 243 1330330 1 0 Kosmotoga pacifica 1184396 256 0 1 genus species 256 1184387 0 Mesotoga prima 1 Thermotogales 0 26 2419 4883 order 1 2 0 8 1643950 2010 family genus 688 2422 3 0 species 2424 148 Fervidobacterium nodosum 0 1 species 1 0 Fervidobacterium islandicum 241 2423 species 1 Fervidobacterium pennivorans 0 93466 299 5 Thermosipho 0 1322 2420 genus 1 2 no rank 2676525 555 2 0 species 274 1437364 Thermosipho sp. 1070 0 1 species 1 Thermosipho sp. 1063 0 1462747 281 species 2421 423 0 Thermosipho africanus 1 species 0 Thermosipho melanesiensis 1 46541 342 family 188709 2871 Thermotogaceae 0 17 2 1 1 25 2335 2070 Thermotoga 0 11 genus species 1508420 297 1 0 Thermotoga profunda 0 Thermotoga naphthophila 1 163 93930 species species 1 Thermotoga neapolitana 0 2337 240 1 Thermotoga caldifontis 0 149 1508419 species 735 2631113 4 0 no rank species Thermotoga sp. Cell2 0 1 1157947 148 126740 184 0 Thermotoga sp. RQ2 1 species species 1 0 Thermotoga sp. 2812B 1157948 194 1 0 Thermotoga sp. RQ7 209 126738 species 279 2336 Thermotoga maritima 0 1 species species 182 93929 1 0 Thermotoga petrophila Pseudothermotoga 0 5 1643951 799 genus 1 13 1 0 Pseudothermotoga thermarum 253 119394 species 177758 185 Pseudothermotoga lettingae 0 1 species species 187 38322 1 Pseudothermotoga elfii 0 161 57487 1 Pseudothermotoga hypogea 0 species 6 0 1643947 2029 order family 0 6 1643949 2029 genus 2 Petrotoga 0 28236 212 1 1 Petrotoga mobilis 0 1 69499 211 species genus 3 0 Marinitoga 160798 1382 13 1 149715 712 0 Marinitoga piezophila 1 species no rank 2640159 657 1 0 species Marinitoga sp. 1137 0 1 1545835 657 genus 0 1 1511648 435 1 0 Defluviitoga tunisiensis 435 1006576 species phylum 0 3 676 1930617 3 Calditrichae 0 676 1962850 class 1 2 2 0 1962852 674 order family Calditrichaceae 0 2 1962854 674 5 1 1 0 669 187144 genus Caldithrix abyssi 0 1 187145 669 species phylum 2380 40117 0 14 1 5 2380 203693 0 Nitrospira 14 class 189778 2375 Nitrospirales 0 13 order 1 80 189779 2295 0 Nitrospiraceae 12 family 1 3 1 1 4 0 Leptospirillum 634 179 genus 0 1 159 261385 species group species 159 1660083 1 Leptospirillum sp. Group II 'CF-1' 0 species group 1 0 655606 318 180 318 Leptospirillum ferrooxidans 0 1 species species group 0 1 261386 156 178606 156 Leptospirillum ferriphilum 0 1 species 1 11 28261 414 0 Thermodesulfovibrio 2 genus species 1 Thermodesulfovibrio yellowstonii 0 28262 403 genus 5 Nitrospira 0 1234 1244 6 1 0 Nitrospira defluvii 1 237 330214 species species 0 Nitrospira moscoviensis 1 42253 338 294 1715989 0 Candidatus Nitrospira inopinata 1 species species 1 Nitrospira japonica 0 369 1325564 0 57 203691 22190 phylum 26 1 class 203692 22190 57 0 Spirochaetia 1 1 1643686 5377 Brachyspirales 0 7 order 197 1 family 6 0 Brachyspiraceae 5376 143786 298 1 genus 5179 29521 5 Brachyspira 0 species 1 0 Brachyspira hyodysenteriae 1307 159 species 1980 52584 1 0 Brachyspira pilosicoli 1 0 Brachyspira intermedia 84377 838 species Brachyspira murdochii 0 1 756 84378 species 0 9 2166 1643688 order 6 1 family 2166 170 0 Leptospiraceae 9 genus 2 Turneriella 0 338321 137 1 1 1 Turneriella parva 0 136 29510 species 1 5 2023 171 Leptospira 0 6 genus species 1 Leptospira borgpetersenii 0 174 394 295 28183 1 Leptospira santarosai 0 species 0 Leptospira interrogans 1 742 173 species species 0 Leptospira alstonii 1 28452 257 172 330 1 0 Leptospira biflexa species 1 434 0 Spirochaetales 40 136 14621 order 0 Borreliaceae 17 1643685 2313 family 1 1 64895 988 0 Borreliella 8 genus 1 25 species 1 0 Borreliella valaisiana 62088 110 71 1674146 1 0 Borrelia mayonii species species 139 248 1 Borreliella burgdorferi 0 0 Borreliella afzelii 1 29518 123 species species 64897 72 1 0 Borreliella bissettii species 136 664662 1 Borreliella bavariensis 0 species 203 29519 Borreliella garinii 0 1 genus Borrelia 0 8 138 1324 13 1 47466 489 Borrelia miyamotoi 0 1 species species 140 73 Borrelia hermsii 0 1 Borrelia turicatae 0 1 189 142 species 143 90 Borrelia anserina 0 1 species 1 0 Borrelia duttonii 188 40834 species 0 Borrelia recurrentis 1 135 44449 species 147 141 Borrelia parkeri 0 1 species 44 1 family 0 Spirochaetaceae 22 11874 137 1 152 157 8259 Treponema 0 12 genus species 0 Treponema paraluiscuniculi 1 53435 280 1 Treponema brennaborense 0 794 81028 species 2126 167 0 Treponema succinifaciens 1 species Treponema denticola 0 1 158 504 species 0 Treponema pedis 1 409322 541 species Treponema caldarium 0 1 215591 367 species 0 Treponema primitia 1 88058 708 species 1238 221027 Treponema putidum 0 1 species 1 0 809 2638727 no rank species 809 1539298 1 Treponema sp. OMZ 838 0 species 0 Treponema azotonutricium 1 150829 549 Treponema pallidum 0 1 191 160 species 582 1616789 0 1 genus 1307761 582 1 Salinispira pacifica 0 species genus 1911556 410 0 1 species Sediminispirochaeta smaragdinae 0 1 410 55206 genus 0 Sphaerochaeta 4 1473 399320 2 1 390 273376 1 Sphaerochaeta coccoides 0 species 1131703 630 1 Sphaerochaeta globosa 0 species species 1 Sphaerochaeta pleomorpha 0 1131707 451 1 6 Spirochaeta 0 3 1106 146 genus species 0 Spirochaeta africana 1 46355 463 154 637 Spirochaeta thermophila 0 1 species phylum 19 0 57723 3723 class 2 0 269 1562566 genus 269 458032 0 Chloracidobacterium 2 8 1 1 Chloracidobacterium thermophilum 0 261 458033 species Acidobacteriia 0 17 3454 204432 class 1 35 order 2672 204433 0 Acidobacteriales 12 47 1 20 1 family 2625 204434 11 0 Acidobacteriaceae 1 1 genus 3 0 Terriglobus 732 392733 species 1 0 Terriglobus roseus 398 392734 species 870903 333 0 Terriglobus saanensis 1 4 1 genus 525 658061 Candidatus Koribacter 0 2 species 521 658062 Candidatus Koribacter versatilis 0 1 genus 533 33973 2 Acidobacterium 0 4 1 529 33075 1 0 Acidobacterium capsulatum species 3 Granulicella 0 940557 815 genus 1 3 389 940614 1 Granulicella mallensis 0 species Granulicella tundricola 0 1 423 940615 species 5 1 order 0 Solibacterales 4 747 332160 family 742 332161 Solibacteraceae 0 3 2 1 1 3 Candidatus Solibacter 0 2 332162 740 genus 332163 737 0 Candidatus Solibacter usitatus 1 species phylum 933 200940 0 5 933 67799 0 5 class 188710 933 5 0 order 0 Thermodesulfobacteriaceae 5 188711 933 family 1 2 genus 1 0 167 444090 0 Caldimicrobium thiodismutans 1 1653476 167 species 241192 263 1 0 genus 1 0 Thermodesulfatator indicus 263 171695 species 501 1740 0 2 genus species 1 Thermodesulfobacterium commune 0 1741 194 1 Thermodesulfobacterium geofontis 0 307 1295609 species 2211 508458 0 10 phylum 1 11 0 Synergistia 10 649775 2211 class 3 1 order Synergistales 0 9 649776 2200 1 202 2197 649777 0 Synergistaceae 8 family 106 49894 2 0 Acetomicrobium genus 1 1 species Acetomicrobium mobile 0 1 97477 105 3 1 genus 1457 508459 Cloacibacillus 0 2 species 1197717 1454 Cloacibacillus porcorum 0 1 1 0 81466 139 genus species 81468 139 Aminobacterium colombiense 0 1 genus 1 0 81461 205 81462 205 Thermanaerovibrio acidaminovorans 0 1 species 336260 88 0 1 genus species 88 336261 Thermovirga lienii 0 1 19621 32066 23 0 phylum 27 1 class Fusobacteriia 0 23 203490 19621 43 1 order 22 0 Fusobacteriales 203491 19594 29 1 family 11 Fusobacteriaceae 0 203492 14209 1 26 Fusobacterium 0 9 13227 848 genus species Fusobacterium mortiferum 0 1 850 914 0 Fusobacterium nucleatum 1 4081 851 species species 1 0 Fusobacterium gonidiaformans 567 849 species Fusobacterium periodonticum 0 1 860 2804 856 1751 1 Fusobacterium varium 0 species species 861 850 1 0 Fusobacterium ulcerans 755 859 1 0 Fusobacterium necrophorum species species 0 Fusobacterium hwasookii 1 1479 1583098 genus 167639 953 1 0 953 167642 0 Ilyobacter polytropus 1 species 3 1 family 5342 1129771 0 Leptotrichiaceae 10 168808 612 0 Sneathia 2 genus 1 1 species 187101 611 1 0 Sneathia amnii 1 4 32067 3153 Leptotrichia 0 5 genus species 1 0 Leptotrichia buccalis 40542 1117 no rank 3 0 2633022 2032 species Leptotrichia sp. oral taxon 212 0 1 918 712357 species 1785996 507 1 0 Leptotrichia sp. oral taxon 847 1 Leptotrichia sp. oral taxon 498 0 712368 607 species 32068 1198 1 0 genus 1 0 Sebaldella termitidis 1198 826 species 0 1 34104 376 genus species 0 Streptobacillus moniliformis 1 34105 376 phylum 8 0 974 74152 0 4 447830 544 class 544 1783344 4 0 order 1 4 544 1783343 4 0 Endomicrobiaceae family 1 2 3 Endomicrobium 0 540 1408194 genus species Candidatus Endomicrobium trichonymphae 0 1 1408204 190 348 1408281 1 Endomicrobium proavitum 0 species no rank 184 99260 1 0 167965 184 1 uncultured Termite group 1 bacterium 0 species 3 0 641853 246 class order 3 0 Elusimicrobiales 641854 246 2 1 1 1 family 0 Elusimicrobiaceae 2 244 641876 genus 423604 243 0 1 1 0 Elusimicrobium minutum 243 423605 species clade 16326 1783257 81 0 18 0 204428 1669 phylum 1 1 204429 1669 18 Chlamydiia 0 class order 0 12 730 51291 730 809 0 12 family 0 12 730 1113537 no rank 810 730 0 Chlamydia 12 genus 1 1 species 0 Chlamydia gallinacea 1 1457153 65 62 1457141 Chlamydia avium 0 1 species 0 Chlamydia pecorum 1 85991 114 species species 83555 38 Chlamydia abortus 0 1 species 0 Chlamydia muridarum 1 21 83560 species 40 83557 1 Chlamydia caviae 0 83559 31 0 Chlamydia suis 1 species 84 83558 1 0 Chlamydia pneumoniae species 1 Chlamydia felis 0 197 83556 species 1 Chlamydia psittaci 0 40 83554 species 1 Chlamydia trachomatis 0 813 37 species order 0 5 938 1963360 family 0 2 271 92713 genus 282132 109 1 0 species 389348 109 Candidatus Protochlamydia naegleriophila 0 1 genus 1 0 162 83551 1 0 Parachlamydia acanthamoebae 83552 162 species 2 0 92714 186 family genus Waddlia 0 2 186 71666 3 1 species 0 Waddlia chondrophila 1 71667 183 family 481 92712 0 1 1 0 481 34093 genus 1 0 Simkania negevensis 83561 481 species phylum 520 134625 5 0 1 1 class 5 0 Kiritimatiellae 520 1921781 order 519 1921782 Kiritimatiellales 0 4 2 1 family 3 Kiritimatiellaceae 0 1921783 517 1 1 2 0 Kiritimatiella 516 1921784 genus 1 14 species 1307763 502 0 Kiritimatiella glycovorans 1 1 7 30 0 Planctomycetes 203682 5841 phylum 976 666505 0 Phycisphaerae 6 class 1 1 order 2483366 656 0 2 family 2 0 2483367 656 2 0 656 2483368 genus Phycisphaerae bacterium ST-PulAB-D4 0 1 1941349 367 species species 1 Phycisphaerae bacterium L21-RPul-D3 0 1940790 289 6 1 order 666506 319 0 Phycisphaerales 3 1 1 family 2 Phycisphaeraceae 0 666507 313 666508 312 1 0 genus species 0 Phycisphaera mikurensis 1 547188 312 4 0 2517206 400 class order 4 Candidatus Brocadiales 0 400 1127829 5 1 Candidatus Brocadiaceae 0 3 1127830 395 family 1 2 380738 393 2 Candidatus Kuenenia 0 genus 1 1 1 0 Candidatus Kuenenia stuttgartiensis 392 174633 species 18 1 class Planctomycetia 0 19 4458 203683 0 3 349 2691355 order 1 1 family 0 Gemmataceae 3 1914233 349 113 348 Gemmata 0 2 genus 1 2 0 1 346 2622970 no rank Gemmata sp. SH-PL17 0 1 346 1630693 species 2691356 1081 0 4 order 1 1 1081 1763524 4 Isosphaeraceae 0 family genus 466152 378 0 1 species 0 Singulisphaera acidiphila 1 378 466153 1763521 435 1 0 genus species Paludisphaera borealis 0 1 435 1387353 0 1 127 267 genus Isosphaera pallida 0 1 128 267 species order 2391 112 8 Planctomycetales 0 39 1 family 2352 126 0 Planctomycetaceae 7 11 1 557 1936111 1 0 genus species Fuerstia marisgermanicae 0 1 1891926 557 118 1102 3 Planctomyces 0 genus 1 14 1088 2648843 2 0 no rank 1636152 638 1 Planctomyces sp. SH-PL62 0 species species 0 Planctomyces sp. SH-PL14 1 1632864 450 1649490 462 0 1 genus 1 Rubinisphaera brasiliensis 0 119 462 species 220 1649480 1 0 genus 220 120 Planctopirus limnophila 0 1 species 3 0 2691354 619 order 2691357 441 0 2 family 0 1 126 123 genus 125 126 1 Pirellula staleyi 0 species 1 0 315 265488 genus species 315 265606 Rhodopirellula baltica 0 1 family 2691358 178 0 1 1 0 1676125 178 genus species 0 Thermogutta terrifontis 1 178 1331910 1 5 74201 5586 25 0 Verrucomicrobia phylum no rank 705 417295 2 0 species 320 1637999 Verrucomicrobia bacterium IMCC26134 0 1 1 Verrucomicrobia bacterium 0 2026799 385 species class 0 1 41 134549 1 0 134550 41 genus 0 1 41 2648876 no rank species 41 1704307 1 Candidatus Xiphinematobacter sp. Idaho Grape 0 203494 2463 5 0 class 2463 48461 5 Verrucomicrobiales 0 order 1 3 0 Akkermansiaceae 4 1647988 2460 family 1 3 1 1 genus 239934 2457 3 0 Akkermansia species 597 1679444 1 0 Akkermansia glycaniphila species 1 0 Akkermansia muciniphila 239935 1859 class 0 Opitutae 11 2222 414999 10 1 1 3 3 Puniceicoccales 0 432 415001 order family 429 415002 0 2 4 1 genus 0 Coraliomargarita 2 429 442430 1 0 Coraliomargarita akajimensis 395922 425 species 1 17 7 0 Opitutales 1780 415000 order family 134623 1763 6 Opitutaceae 0 8 1 genus Opitutus 0 2 178440 424 6 1 species 418 107709 0 Opitutus terrae 1 0 1 768 278955 no rank species 1 Opitutaceae bacterium TAV5 0 768 794903 genus Lacunisphaera 0 2 1961799 563 11 1 0 Lacunisphaera limnophila 1 552 1838286 species 1 1 150 1955630 5 0 Methylacidiphilae class order 4 Methylacidiphilales 0 717963 149 1 1 3 0 148 717964 family 1 1 genus 148 511745 0 Methylacidiphilum 3 species 511746 63 1 0 Methylacidiphilum infernorum species 84 591154 1 Methylacidiphilum fumariolicum 0 phylum 0 3 2710 256845 class 3 0 Lentisphaeria 1313211 2710 4 1 order Victivallales 0 2 2706 278082 664 1 0 1 2042 1674876 no rank species 2042 2094242 Victivallales bacterium CCUG 44730 0 1 no rank 2 0 181 2323 clade 2 0 1783234 181 52 95818 0 1 phylum 0 1 52 1895827 no rank species 2056494 52 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 1 129 95901 0 1 clade 2497643 129 1 0 class order 0 1 129 2497644 family 1 0 2497645 129 genus 0 1 1551504 129 species 129 673862 0 Candidatus Babela massiliensis 1 0 1 0 name