members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4770 31 39328 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 26952500 1 name 0 0 26847853 0 4460 1 superkingdom Bacteria 2 122 1783257 92 clade 59590 0 3 phylum 0 18727 256845 37 1313211 3 class Lentisphaeria 1 0 18727 278082 2543 0 18690 order Victivallales 1 2 1 no rank 16147 0 1674876 2094242 1 Victivallales bacterium CCUG 44730 species 16147 0 204428 0 2852 22 phylum 2852 0 1 class Chlamydiia 22 204429 7 1 51291 14 Chlamydiales order 1 0 1750 3 809 13 1 Chlamydiaceae family 0 1749 1113537 no rank 12 1746 0 Chlamydia genus 1 12 1746 0 110 810 83556 0 152 Chlamydia felis species 1 83554 1 species Chlamydia psittaci 165 0 83559 0 153 species Chlamydia suis 1 813 1 Chlamydia trachomatis species 0 198 83557 1 Chlamydia caviae species 0 93 0 157 1 Chlamydia abortus species 83555 83558 Chlamydia pneumoniae species 1 128 0 1 species Chlamydia avium 0 100 1457141 1457153 1 Chlamydia gallinacea species 162 0 species Chlamydia pecorum 1 172 0 85991 83560 156 0 1 Chlamydia muridarum species 7 1 order Parachlamydiales 0 1095 3 1963360 92713 637 0 3 family 1 genus 263 0 282132 263 0 1 Candidatus Protochlamydia naegleriophila species 389348 0 374 1 Parachlamydia genus 2 83551 2 83552 species Parachlamydia acanthamoebae 1 0 372 family 1 0 276 92714 71666 0 276 genus 1 71667 species Waddlia chondrophila 1 0 276 179 0 family Simkaniaceae 1 2 92712 9 34093 170 0 1 genus 83561 1 species Simkania negevensis 170 0 74201 24 16415 0 phylum Verrucomicrobia 1 27 417295 0 2998 no rank 2 2026799 Verrucomicrobia bacterium species 1 1411 0 1637999 1587 0 Verrucomicrobia bacterium IMCC26134 species 1 4 1 Methylacidiphilae class 473 0 3 1955630 1 717963 3 1 Methylacidiphilales order 470 0 717964 469 0 2 family 2 genus 469 0 511745 species Methylacidiphilum infernorum 1 0 266 511746 1 Methylacidiphilum fumariolicum species 203 0 591154 1 Verrucomicrobiae class 6 0 4479 30 203494 28 48461 1 Verrucomicrobiales order 5 0 4449 1647988 44 0 4421 family Akkermansiaceae 1 4 0 4377 3 1 Akkermansia genus 239934 34 1679444 Akkermansia glycaniphila species 1 0 1920 239935 0 2423 1 species Akkermansia muciniphila 134549 2 class 0 91 134550 1 0 91 genus Candidatus Xiphinematobacter 1 2 2648876 0 90 1 no rank 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 1 90 0 12 Opitutae class 1 8350 0 90 414999 7 1 order Opitutales 0 7491 202 415000 0 7289 1 family Opitutaceae 6 134623 76 1961799 67 0 2285 2 genus Lacunisphaera 1 1838286 species Lacunisphaera limnophila 1 2218 0 278955 0 2787 no rank 1 794903 2787 0 species Opitutaceae bacterium TAV5 1 43 178440 genus Opitutus 1 2 2141 0 107709 Opitutus terrae species 1 2098 0 4 order Puniceicoccales 1 0 769 8 415001 0 761 1 Puniceicoccaceae family 3 415002 8 4 442430 2 1 genus Coraliomargarita 0 753 Coraliomargarita akajimensis species 1 749 0 395922 0 19958 35 1 phylum Planctomycetes 203682 3 3874 0 7 1 Phycisphaerae class 666505 25 2209 0 4 1 order Phycisphaerales 666506 39 3 1 family Phycisphaeraceae 0 2170 23 666507 666508 24 2147 0 genus Phycisphaera 1 2 547188 species Phycisphaera mikurensis 1 0 2123 order 2 0 1640 2483366 2483367 2 family 0 1640 genus 2 1640 0 2483368 1 Phycisphaerae bacterium ST-PulAB-D4 species 805 0 1941349 1940790 835 0 1 species Phycisphaerae bacterium L21-RPul-D3 2517206 class 2 0 689 Candidatus Brocadiales order 1 2 689 0 17 1127829 1127830 0 672 family 1 0 672 1 genus 380738 1 Candidatus Kuenenia stuttgartiensis species 0 672 174633 148 203683 25 class Planctomycetia 1 0 15392 7 order 0 4631 2691356 1763524 56 4631 0 1 Isosphaeraceae family 7 1 genus Paludisphaera 2 0 2574 15 1763521 Paludisphaera borealis species 1 0 2559 1387353 2 Singulisphaera genus 1 0 1120 8 466152 species Singulisphaera acidiphila 1 0 1112 466153 24 127 1 genus Isosphaera 2 0 881 species Isosphaera pallida 1 857 0 128 2691355 0 1253 2 order 1914233 family 2 1253 0 113 5 0 1253 2 1 genus Gemmata 2622970 no rank 1 1248 0 1630693 1248 0 Gemmata sp. SH-PL17 species 1 2691354 order 5 1590 0 2691357 4 family 0 1106 1 265488 2 1 Rhodopirellula genus 0 480 265606 Rhodopirellula baltica species 1 0 479 5 123 2 Pirellula genus 1 0 626 125 species Pirellula staleyi 1 0 621 2691358 1 family 484 0 1676125 1 genus 0 484 0 484 species Thermogutta terrifontis 1 1331910 303 112 1 order Planctomycetales 10 0 7770 7467 0 9 family Planctomycetaceae 1 126 27 1936111 9 1010 0 Fuerstia genus 1 2 0 1001 Fuerstia marisgermanicae species 1 1891926 Planctopirus genus 1 2 820 0 3 1649480 120 1 Planctopirus limnophila species 817 0 0 771 1 genus 1649490 119 0 771 Rubinisphaera brasiliensis species 1 1 Planctomyces genus 3 0 4839 31 118 2648843 no rank 2 0 4808 1636152 0 3130 species Planctomyces sp. SH-PL62 1 0 1678 Planctomyces sp. SH-PL14 species 1 1632864 134625 1638 0 5 phylum 9 1921781 class Kiritimatiellae 1 5 1638 0 1921782 7 0 1629 order Kiritimatiellales 1 4 3 Kiritimatiellaceae family 1 1622 0 2 1921783 Kiritimatiella genus 1 2 1620 0 44 1921784 1307763 1576 0 1 Kiritimatiella glycovorans species 32066 0 30136 24 phylum 203490 10 30136 0 24 class Fusobacteriia 1 23 1 Fusobacteriales order 0 30126 72 203491 1 Leptotrichiaceae family 11 8886 0 15 1129771 22 32067 5 1 genus Leptotrichia 5034 0 40542 Leptotrichia buccalis species 1 0 1136 3876 0 3 no rank 2633022 1129 0 Leptotrichia sp. oral taxon 498 species 1 712368 712357 species Leptotrichia sp. oral taxon 212 1 1704 0 1785996 1043 0 1 Leptotrichia sp. oral taxon 847 species 1 Sebaldella genus 2 1805 0 1 32068 1804 0 1 Sebaldella termitidis species 826 3 168808 2 Sneathia genus 1 1052 0 187101 Sneathia amnii species 1 1049 0 0 980 1 genus 34104 0 980 1 Streptobacillus moniliformis species 34105 27 203492 family Fusobacteriaceae 1 11 21168 0 9 1 genus Fusobacterium 0 19891 155 848 1583098 species Fusobacterium hwasookii 1 0 1716 856 Fusobacterium varium species 1 3212 0 850 species Fusobacterium mortiferum 1 1489 0 species Fusobacterium ulcerans 1 0 1979 861 1 Fusobacterium nucleatum species 0 5765 851 860 3462 0 1 species Fusobacterium periodonticum 859 0 1034 species Fusobacterium necrophorum 1 1079 0 Fusobacterium gonidiaformans species 1 849 1 genus 1250 0 167639 167642 0 1250 species Ilyobacter polytropus 1 378 clade 8958605 0 1783270 phylum 5 0 2144 65842 5 1 class Fibrobacteria 2144 0 7 204430 order Fibrobacterales 1 4 0 2137 5 218872 204431 1 2132 0 family Fibrobacteraceae 1 3 9 832 2 genus Fibrobacter 1 0 2131 833 2122 0 species Fibrobacter succinogenes 1 8 phylum 6273 0 142182 219685 30 0 6273 8 1 Gemmatimonadetes class 122 219686 1 Gemmatimonadales order 7 0 6243 219687 92 6121 0 6 1 family Gemmatimonadaceae 3139 0 2 1 genus Gemmatirosa 1706036 32 861299 3107 0 1 species Gemmatirosa kalamazoonesis 3 Gemmatimonas genus 1 2890 0 24 173479 Gemmatimonas aurantiaca species 1 1447 0 173480 1 Gemmatimonas phototrophica species 0 1419 1379270 8949544 0 clade 363 68336 1090 16150 0 phylum 22 22 1 Chlorobia class 0 16150 87 191410 153 191411 21 1 order Chlorobiales 16063 0 1 family Chlorobiaceae 20 15910 0 86 191412 2 100715 2 genus Chloroherpeton 1 888 0 100716 1 species Chloroherpeton thalassium 0 886 no rank 8 6123 0 274493 1 Pelodictyon genus 3 2192 0 10 1099 Pelodictyon phaeoclathratiforme species 1 790 0 34090 1100 1 species Pelodictyon luteolum 0 1392 16 1091 5 1 Chlorobium genus 3931 0 1094 species Chlorobium phaeovibrioides 1 0 912 1554 0 1 species Chlorobium phaeobacteroides 1096 1092 1 Chlorobium limicola species 1014 0 1 species Chlorobium chlorochromatii 0 435 337090 1 genus Chlorobaculum 4 0 5671 68 256319 1916 0 1 Chlorobaculum parvum species 274539 1097 1 species Chlorobaculum tepidum 1515 0 274537 species Chlorobaculum limnaeum 1 0 2172 1101 3 3142 0 Prosthecochloris genus 1 5 704 0 1 species Prosthecochloris aestuarii 1102 no rank 3 0 2435 2632826 648 0 1 species Prosthecochloris sp. HL-130-GSB 1974213 species Prosthecochloris sp. CIB 2401 1 0 607 1868325 281093 1 species Prosthecochloris sp. GSB1 1180 0 phylum 5 0 1870 1134404 795747 0 1870 class 5 20 795748 5 order Ignavibacteriales 1 0 1870 0 1031 3 1 Ignavibacteriaceae family 795749 1 0 1030 1 Ignavibacterium genus 2 795750 1 1029 0 1 Ignavibacterium album species 591197 1334117 0 819 family 1 1 genus 0 819 1134403 1134405 819 0 Melioribacter roseus species 1 976 29 0 8931524 336 phylum Bacteroidetes 1 768503 131 52441 0 1 Cytophagia class 61 0 52310 1 Cytophagales order 60 768507 272 4 1501348 Amoebophilaceae family 1 4 401 0 3 281119 2 Candidatus Amoebophilus genus 1 213 0 281120 210 0 Candidatus Amoebophilus asiaticus species 1 0 184 genus 1 273135 no rank 1 184 0 2641185 249402 0 184 1 species Cardinium endosymbiont of Encarsia pergandiella 0 1093 family Bernardetiaceae 1 3 1937968 3 1937972 1 0 1090 2 1 Bernardetia genus 1089 0 1 Bernardetia litoralis species 999 17 Cytophagaceae family 1 0 12981 101 89373 40 107 6 genus Spirosoma 1 6265 0 1 Spirosoma radiotolerans species 1253 0 1379870 1178516 species Spirosoma montaniterrae 1 0 1400 2057025 0 1224 Spirosoma sp. HA7 species 1 1 Spirosoma rigui species 1332 0 564064 1211326 0 1016 1 Spirosoma aerolatum species genus Fibrella 1 2 0 1089 2 861914 1 no rank 1087 0 2620963 species Fibrella sp. ES10-3-2-2 1 1087 0 1834519 0 916 1 Leadbetterella genus 2 319458 2 914 0 Leadbetterella byssophila species 1 316068 13 978 genus Cytophaga 1 2 0 1036 985 1023 0 1 species Cytophaga hutchinsonii genus Runella 1 2 0 1558 2 105 106 0 1556 1 species Runella slithyformis 2016 0 2 1 Dyadobacter genus 120831 5 1 Dyadobacter fermentans species 2011 0 94254 1853234 3 0 1610 3 Persicobacteraceae family 1 1 Persicobacter genus 2 0 1607 5 59740 no rank 1 0 1602 2664020 1602 0 1 Persicobacter sp. JZB09 species 1085624 200667 7 2897 0 1 family Flammeovirgaceae 4 0 1619 1 no rank 340671 0 1619 Flammeovirgaceae bacterium 311 species 1 1257021 1 59739 Flammeovirga genus 1 2 0 1271 1 no rank 0 1270 2637820 0 1270 species Flammeovirga sp. MY04 1 1191459 16 1 family Hymenobacteraceae 28259 0 87 1853232 89966 282 20959 0 genus Hymenobacter 1 8 1 species Hymenobacter sedentarius 3528 0 1411621 2615202 5 no rank 0 14332 1484118 0 3706 Hymenobacter sp. PAMC 26628 species 1 2358 0 1 Hymenobacter sp. DG25B species 1385664 1 species Hymenobacter sp. APR13 3405 0 1356852 3134 0 1 species Hymenobacter sp. PAMC 26554 1484116 1385663 1 species Hymenobacter sp. DG25A 1729 0 Hymenobacter swuensis species 1 2817 0 1446467 0 4052 genus Rufibacter 1 4 1379908 51 512763 Rufibacter tibetensis species 1 0 1562 2 no rank 0 2439 2639626 Rufibacter sp. DG15C species 1 1104 0 1379909 0 1335 Rufibacter sp. DG31D species 1 1379910 323449 23 0 3161 genus Pontibacter 1 3 388950 1 species Pontibacter akesuensis 0 1740 400092 0 1398 species Pontibacter korlensis 1 563798 10 4086 0 1 family Cyclobacteriaceae 10 68288 17 1458 0 3 genus Cyclobacterium 1 320787 0 685 Cyclobacterium amurskyense species 1 1 Cyclobacterium marinum species 756 0 104 0 666 1 genus Belliella 2 232244 1 232259 0 665 Belliella baltica species 1 0 1270 genus Echinicola 1 2 390846 1 390884 1 Echinicola vietnamensis species 1269 0 0 682 genus Algoriphagus 1 2 246875 1 1727163 0 681 1 species Algoriphagus sp. M8-2 2762301 0 711 family 2 869806 8 0 711 2 genus Marivirga 1 703 0 Marivirga tractuosa species 1 1006 117743 80 0 109428 1 class Flavobacteriia 148 109348 0 Flavobacteriales order 1 147 200644 100 family 1 785 0 1333713 267986 785 0 1 genus 0 785 Owenweeksia hongkongensis species 1 253245 1 Ichthyobacteriaceae family 2 0 207 1 1755828 1755829 genus 1 0 206 242600 Ichthyobacterium seriolicida species 1 206 0 2762318 37799 0 21 family 0 12021 no rank 10 2782232 9 1 Chryseobacterium genus 10095 0 54 59732 2254 0 1 species Chryseobacterium indologenes 253 no rank 3 0 3550 2593645 1721091 1002 0 1 Chryseobacterium sp. IHB B 17019 species 1 species Chryseobacterium sp. StRB126 1063 0 878220 2015076 1485 0 Chryseobacterium sp. T16E-39 species 1 1685010 Chryseobacterium glaciei species 1 0 905 1324352 1145 0 1 Chryseobacterium gallinarum species 558152 species Chryseobacterium piperi 1 0 949 1 Chryseobacterium camelliae species 0 1238 1265445 1 genus 1926 0 2782228 536441 1 species Chryseobacterium taklimakanense 0 1926 genus 1 0 411 1013 1014 0 411 Weeksella virosa species 1 7236 0 6 Elizabethkingia genus 1 308865 72 238 species Elizabethkingia meningoseptica 1 1401 0 1 species Elizabethkingia anophelis 0 2210 1117645 1756150 species Elizabethkingia genomosp. 4 1 0 791 species Elizabethkingia miricola 1 1859 0 172045 1756149 0 903 1 Elizabethkingia genomosp. 3 species 1 34084 2 genus Riemerella 1 2158 0 species Riemerella anatipestifer 1 0 2157 34085 28250 112 0 15973 1 genus Ornithobacterium 2 1 species Ornithobacterium rhinotracheale 0 15861 28251 246874 0 2 family Cryomorphaceae 1 1 family Blattabacteriaceae 10 1264 0 5 39782 30 34098 Blattabacterium genus 1 9 0 1259 219 0 1 Blattabacterium punctulatus species 164514 1 Blattabacterium cuenoti species 160 0 1653831 2647581 no rank 6 850 0 Blattabacterium sp. (Periplaneta americana) species 1 133 0 367488 39768 0 149 1 species Blattabacterium sp. (Mastotermes darwiniensis) 128 0 1 Blattabacterium sp. (Blatta orientalis) species 367806 species Blattabacterium sp. (Nauphoeta cinerea) 1 112 0 1316444 1186051 0 132 1 species Blattabacterium sp. (Blaberus giganteus) 624186 Blattabacterium sp. (Blattella germanica) species 1 0 196 1471 49546 family Flavobacteriaceae 1 105 0 68116 178469 1 genus 958 0 1 Arenibacter algicola species 958 0 616991 1 genus 0 626 393005 0 626 1 species Tamlana sp. UJ94 2069432 2465 0 4 Cellulophaga genus 1 104264 1 0 775 1 Cellulophaga algicola species 59600 1 species Cellulophaga lytica 0 685 979 76594 0 1004 1 Cellulophaga baltica species 5 genus Gramella 1 0 3110 11 292691 1913577 1 species Gramella sp. LPB0144 0 500 858 0 1 species Gramella flava 1486245 411153 Gramella forsetii species 1 754 0 1 Gramella sp. SH35 species 0 987 2126553 8 252356 5 1 genus Maribacter 0 2823 2103 0 3 no rank 2615042 638 0 Maribacter sp. T28 species 1 1836467 0 605 1 Maribacter sp. HTCC2170 species 313603 1 Maribacter sp. 1_2014MBL_MicDiv species 0 860 1644130 Maribacter cobaltidurans species 1 0 712 1178778 9 Flavobacterium genus 1 8171 0 22 237 924 0 species Flavobacterium commune 1 1306519 Flavobacterium indicum species 1 548 0 312277 Flavobacterium johnsoniae species 1 2746 0 986 1492737 1 Flavobacterium gilvum species 0 1028 0 646 1 species Flavobacterium psychrophilum 96345 596 0 1 Flavobacterium crassostreae species 1763534 996 0 1214 Flavobacterium columnare species 1 0 447 1 Flavobacterium branchiophilum species 55197 15932 0 1 genus Capnocytophaga 15 1016 112 28189 0 827 1 species Capnocytophaga cynodegmi 829 0 species Capnocytophaga ochracea 1 1018 2640652 6510 0 6 no rank Capnocytophaga sp. H4358 species 1 573 0 1945658 0 669 1 Capnocytophaga sp. H2931 species 1945657 209053 737 0 1 Capnocytophaga sp. ChDC OS43 species 1316596 species Capnocytophaga sp. oral taxon 878 1 0 3041 767 0 1 Capnocytophaga sp. oral taxon 864 species 1316593 1705617 1 species Capnocytophaga sp. oral taxon 323 723 0 1017 615 0 species Capnocytophaga gingivalis 1 Capnocytophaga sputigena species 1 1307 0 1019 327575 3244 0 Capnocytophaga leadbetteri species 1 1 species Capnocytophaga stomatis 0 948 1848904 1 species Capnocytophaga haemolytica 0 705 45243 835 0 1 Capnocytophaga canimorsus species 28188 5 Tenacibaculum genus 1 0 2644 8 104267 904 0 Tenacibaculum jejuense species 1 584609 1850252 1 species Tenacibaculum todarodis 645 0 0 523 species Tenacibaculum maritimum 1 107401 669041 1 Tenacibaculum dicentrarchi species 564 0 389486 genus 1 500 0 2648869 1 no rank 0 500 1453352 Sediminicola sp. YIK13 species 1 0 500 0 1116 Robiginitalea genus 1 2 252306 3 0 1113 1 Robiginitalea biformata species 252307 112040 4 0 892 2 1 Zobellia genus 63186 0 888 1 Zobellia galactanivorans species 0 824 2 genus Salegentibacter 1 143222 11 813 0 1 no rank 2633436 1729720 0 813 1 species Salegentibacter sp. T436 5 1 Nonlabens genus 0 1814 7 363408 2615035 2 no rank 933 0 Nonlabens sp. MIC269 species 1 404 0 1476901 0 529 Nonlabens sp. MB-3u-79 species 1 2058134 319236 1 species Nonlabens sediminis 366 0 328515 1 species Nonlabens dokdonensis 0 508 596 0 genus 1 1518147 1790137 596 0 Wenyingzhuangia fucanilytica species 1 3 genus Winogradskyella 1 1423 0 1 286104 2615021 1422 0 2 no rank 1936080 1 species Winogradskyella sp. J14-2 739 0 0 683 1 species Winogradskyella sp. PG-2 754409 0 603 1 genus 1204360 species Siansivirga zeaxanthinifaciens 1 0 603 762954 4 111500 3 1 Muricauda genus 0 1715 Muricauda ruestringensis species 1 0 917 111501 1 Muricauda lutaonensis species 794 0 516051 76831 50 0 4065 1 genus Myroides 5 Myroides profundi species 1 649 0 480520 76832 1948 0 1 species Myroides odoratimimus 2642485 1418 0 2 no rank 1458492 673 0 1 Myroides sp. ZB35 species 1583100 1 species Myroides sp. A21 745 0 2 1209327 1 Flavivirga genus 2 816 0 1803846 814 0 Flavivirga eckloniae species 1 1333 0 4 genus Dokdonia 1 326319 6 326320 1 Dokdonia donghaensis species 483 0 2615033 2 no rank 844 0 983548 1 species Dokdonia sp. 4H-3-7-5 0 500 1 Dokdonia sp. MED134 species 344 0 313590 225842 574 0 2 genus 2644710 no rank 2 574 0 1336794 1 species Formosa sp. Hel1_33_131 0 346 0 228 1 species Formosa sp. Hel3_A1_48 1336795 1176327 476 0 1 genus 2636237 476 0 1 no rank 2094025 476 0 1 species Aureitalea sp. RR4-38 1 genus 601 0 153265 101385 601 0 Aequorivita sublithincola species 1 52959 16 3828 0 genus Polaribacter 1 6 196858 1948 0 3 no rank Polaribacter sp. MED152 species 1 609 0 313598 1529069 0 563 species Polaribacter sp. BM10 1 1 species Polaribacter sp. ALD11 0 776 2058137 996801 0 991 species Polaribacter reichenbachii 1 1 Polaribacter vadi species 873 0 1774273 2 no rank 0 1730 61432 1150389 0 816 1 species Flavobacteriaceae bacterium UJ101 531844 species Flavobacteriaceae bacterium 3519-10 1 914 0 genus 1 754 0 2700084 0 754 1 species Lutibacter sp. LPB0138 1850246 3 358023 2 1 genus Lutibacter 647 0 Lutibacter profundi species 1 644 0 1622118 genus 1 487 0 83612 57029 Psychroflexus torquis species 1 0 487 1 336276 2 Olleya genus 1 0 512 0 511 1 no rank 2615019 1 species Olleya sp. Bg11-27 511 0 2058135 1 1649495 2 1 Seonamhaeicola genus 0 905 0 904 1 no rank 2622645 1 Seonamhaeicola sp. S2-3 species 0 904 1936081 genus 1 485 0 216431 0 485 1 species Croceibacter atlanticus 313588 1 genus 0 759 261827 1 species Algibacter alginicilyticus 0 759 1736674 2 1 genus Zunongwangia 0 920 14 417127 398743 906 0 species Zunongwangia profunda 1 2 291183 1 genus Lacinutrix 4 1541 0 2647285 2 no rank 1080 0 983544 541 0 1 species Lacinutrix sp. 5H-3-7-4 1 species Lacinutrix sp. Bg11-31 539 0 2057808 1 Lacinutrix venerupis species 0 459 1486034 3 Crocinitomicaceae family 1 0 833 5 1853230 828 0 2 1 Fluviicola genus 332102 19 191579 0 809 1 species Fluviicola taffensis 313602 0 242 no rank 3 genus 1 85 0 1940138 1415657 0 85 1 Candidatus Walczuchella monophlebidarum species 1 genus Candidatus Sulcia 2 0 157 7 336809 150 0 1 species Candidatus Sulcia muelleri 336810 0 18317 class Sphingobacteriia 1 24 117747 8 200666 44 0 18309 23 Sphingobacteriales order 1 84566 48 18265 0 1 family Sphingobacteriaceae 22 1649482 8 1179 0 1 Pseudopedobacter genus 2 1 species Pseudopedobacter saltans 0 1171 151895 0 5728 6 genus Pedobacter 1 84567 15 0 1144 Pedobacter cryoconitis species 1 188932 984 1 Pedobacter heparinus species 0 1033 363852 1148 0 1 species Pedobacter ginsengisoli 2628915 0 1156 1 no rank 1156 0 Pedobacter sp. PACM 27299 species 1 1727164 430522 species Pedobacter steynii 1 1232 0 28453 27 5557 0 genus Sphingobacterium 1 6 0 4517 4 no rank 2609468 1 Sphingobacterium sp. B29 species 1181 0 1933220 743722 Sphingobacterium sp. 21 species 1 1129 0 1538644 1 species Sphingobacterium sp. ML3W 0 1046 2003121 Sphingobacterium sp. G1-14 species 1 0 1161 1010 1013 0 Sphingobacterium mizutaii species 1 84568 1258 0 1 no rank 1986952 0 1258 1 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 16 423349 4 1 genus Mucilaginibacter 0 3226 2617802 1141 0 1 no rank 0 1141 1 species Mucilaginibacter sp. PAMC 26640 1300914 0 1204 Mucilaginibacter gotjawali species 1 1550579 1234841 1 species Mucilaginibacter sp. BJC16-A31 0 865 7 929509 Solitalea genus 1 2 1269 0 995 1262 0 Solitalea canadensis species 1 10658 0 17 1 Chitinophagia class 1853228 15 0 10643 Chitinophagales order 1 16 1853229 61 563835 37 10582 0 1 family Chitinophagaceae 15 3 1 Chitinophaga genus 0 3149 3 79328 2211 0 species Chitinophaga pinensis 1 79329 2029983 935 0 species Chitinophagaceae bacterium 13 1 0 2228 3 genus Niabella 1 379899 7 446683 0 1092 1 species Niabella soli 0 1129 species Niabella ginsenosidivorans 1 1176587 2 1 Arachidicoccus genus 1072 0 5 1769012 2636138 no rank 1 1067 0 species Arachidicoccus sp. BS20 1 1067 0 1850526 4 354354 1 genus Niastella 2 0 1646 354356 1642 0 Niastella koreensis species 1 2 398041 2 1 genus Flavisolibacter 0 794 1492898 792 0 1 Flavisolibacter tropicus species 2 649460 1 Filimonas genus 2 1656 0 Filimonas lacunae species 1 0 1654 477680 0 8730274 71 1 Bacteroidia class 200643 178 0 8724621 59 order Bacteroidales 1 171549 1509 2005520 0 10469 family 6 0 3840 1 genus Petrimonas 2 307628 9 1642646 Petrimonas mucosa species 1 3831 0 1784836 6 0 2644 1 genus Fermentimonas 2 1 Fermentimonas caenicola species 2638 0 1562970 Proteiniphilum genus 1 2 0 3985 29 294702 1 species Proteiniphilum saccharofermentans 3956 0 1642647 2 family 2359 0 2005523 346096 42 0 2359 Paludibacter genus 1 2 1 Paludibacter propionicigenes species 2317 0 185300 0 640345 7 Tannerellaceae family 1 2005525 149 1 genus Tannerella 3 31380 0 46 195950 0 6001 no rank 1 2620507 712710 0 6001 species Tannerella sp. oral taxon HOT-286 1 28112 species Tannerella forsythia 1 0 25333 genus Parabacteroides 1 3 0 608816 167 375288 2649774 0 374217 1 no rank 2025876 374217 0 Parabacteroides sp. CT06 species 1 1 species Parabacteroides distasonis 0 234432 823 1 Bacteroidaceae family 11 0 2703739 77 815 816 69767 2703662 0 10 1 genus Bacteroides 125223 0 1 species Bacteroides helcogenes 290053 28116 292477 0 species Bacteroides ovatus 1 818 0 618725 species Bacteroides thetaiotaomicron 1 species Bacteroides heparinolyticus 1 95856 0 28113 1 species Bacteroides zoogleoformans 90719 0 28119 1796613 173224 0 species Bacteroides caecimuris 1 871407 0 Bacteroides cellulosilyticus species 1 246787 47678 1 species Bacteroides caccae 0 77005 1 species Bacteroides fragilis 289259 0 817 2005519 29 122269 0 3 1 family Barnesiellaceae 2 genus Barnesiella 1 0 122240 109 397864 0 122131 1 Barnesiella viscericola species 397865 0 10252 4 family Porphyromonadaceae 1 171551 60 10192 0 3 genus Porphyromonas 1 836 5 837 0 8368 species Porphyromonas gingivalis 1 28123 species Porphyromonas asaccharolytica 1 1819 0 0 203014 5 1 family Rikenellaceae 171550 31 1 Alistipes genus 2 200688 0 78 239759 214856 200610 0 1 Alistipes finegoldii species 20 1611681 2 1 genus Mucinivorans 2295 0 Mucinivorans hirudinis species 1 0 2275 1433126 333046 5 no rank 4799245 0 2 genus Candidatus Azobacteroides 1 0 863 1 511434 Candidatus Azobacteroides pseudotrichonymphae species 1 0 862 511435 909656 genus 3 4798382 0 821 1 species Bacteroides vulgatus 0 4041157 81785 0 Bacteroides salanitronis species 1 376805 species Bacteroides dorei 1 0 675440 357276 6 1853231 1 Odoribacteraceae family 3 48894 0 1 Odoribacter genus 2 0 48888 6 283168 28118 1 Odoribacter splanchnicus species 0 48882 0 181180 11 1 Prevotellaceae family 171552 25 230 838 1 Prevotella genus 10 0 181155 1 Prevotella enoeca species 2755 0 76123 839 Prevotella ruminicola species 1 0 5487 28129 species Prevotella denticola 1 0 4767 Prevotella intermedia species 1 149536 0 28131 Prevotella melaninogenica species 1 3242 0 28132 1 Prevotella dentalis species 7151 0 52227 2638335 1445 0 1 no rank 652716 1445 0 1 species Prevotella sp. oral taxon 299 1177574 species Prevotella jejuni 1 3274 0 species Prevotella fusca 1 0 3268 589436 185291 1 no rank 1346 0 1400053 0 1346 species Bacteroidales bacterium CF 1 11 1 order Marinilabiliales 0 5475 7 1970189 2 family 1060 0 558415 1060 0 1 genus Alkalitalea 2 1193324 3 889453 species Alkalitalea saponilacus 1 1057 0 1 Prolixibacteraceae family 3 2059 0 6 1471398 2 Draconibacterium genus 1 0 2053 14 1471399 1168034 Draconibacterium orientale species 1 2039 0 1573805 1 0 1592 1 family Marinifilaceae 2 0 1591 genus 1 2060722 0 1591 1 species Marinifilaceae bacterium SPP2 1717717 1 Salinivirgaceae family 3 757 0 1 1970190 1970191 4 756 0 2 1 genus Salinivirga 1307839 species Salinivirga cyanobacteriivorans 1 752 0 2220 0 1 class Saprospiria 7 1937959 15 1936988 9 0 2205 6 Saprospirales order 1 2 family 0 589 89374 1007 7 0 589 2 1 genus Saprospira species Saprospira grandis 1 0 582 1008 3 1937961 3 1 Haliscomenobacteraceae family 0 1607 2 1 genus Haliscomenobacter 0 1604 5 2349 2350 1 Haliscomenobacter hydrossis species 1599 0 1100069 143 8157 0 1 order Bacteroidetes Order II. Incertae sedis 7 8014 0 family Rhodothermaceae 1 6 563843 82 9 146918 2 1 genus Salinibacter 0 1323 Salinibacter ruber species 1 0 1314 146919 0 3693 Rhodothermus genus 1 2 29548 18 29549 species Rhodothermus marinus 1 0 3675 1196022 no rank 1 2916 0 0 2916 1 Rhodothermaceae bacterium RA species 1779382 456828 phylum 2 0 644 4 456826 2 Candidatus Cloacimonas genus 1 0 644 Candidatus Cloacimonas acidaminovorans species 1 0 640 456827 phylum 2 0 337 2138240 2 class 0 337 2138243 1 2138246 2 order Coprothermobacterales 1 0 337 2138247 1 family 0 336 336 0 genus 1 68335 35786 336 0 1 Coprothermobacter proteolyticus species 508458 0 8448 phylum 11 649775 24 8448 0 11 class Synergistia 1 10 Synergistales order 1 8424 0 29 649776 111 649777 1 family Synergistaceae 9 8395 0 336260 1 genus 478 0 0 478 species Thermovirga lienii 1 336261 Thermanaerovibrio genus 1 2 0 869 9 81461 81462 860 0 Thermanaerovibrio acidaminovorans species 1 Acetomicrobium genus 1 2 457 0 3 49894 97477 454 0 1 Acetomicrobium mobile species 648 0 genus 1 81466 0 648 Aminobacterium colombiense species 1 81468 0 5832 2 Cloacibacillus genus 1 508459 20 1 Cloacibacillus porcorum species 0 5812 1197717 15477779 0 1726 clade 1783272 200795 1 22686 0 46 1 phylum Chloroflexi 1382928 46 3523 0 5 Ardenticatenia class 1 1382929 66 0 3477 4 Ardenticatenales order 1 0 3411 3 family Ardenticatenaceae 1 1382930 50 14 1988031 Candidatus Promineofilum genus 1 2 0 3361 Candidatus Promineofilum breve species 1 0 3347 1806508 16 32061 11 1 Chloroflexia class 5148 0 1 order Chloroflexales 10 0 5132 77 32064 1508595 0 2811 suborder 4 1508635 37 0 2811 4 family Roseiflexaceae 1 5 120961 1 genus Roseiflexus 3 0 2774 2609473 1 no rank 0 1360 357808 0 1360 Roseiflexus sp. RS-1 species 1 120962 1409 0 Roseiflexus castenholzii species 1 suborder 5 2244 0 1508594 2 1106 family Chloroflexaceae 1 5 0 2244 0 2242 4 genus Chloroflexus 1 1107 29 0 687 species Chloroflexus aggregans 1 152260 1 Chloroflexus aurantiacus species 2 0 1526 763 1108 763 0 1 strain Chloroflexus sp. Y-400-fl 480224 1 class Anaerolineae 8 0 5199 3 292625 292629 18 0 5196 7 1 order Anaerolineales 1 family Anaerolineaceae 6 5178 0 11 292628 2929 0 1 no rank 1324991 1889813 1 species Anaerolineaceae bacterium oral taxon 439 2929 0 2 1 Anaerolinea genus 0 1439 3 233189 167964 species Anaerolinea thermophila 1 1436 0 1 Brevefilum genus 2 0 799 1 2019482 0 798 Brevefilum fermentans species 1 1986204 301297 26 4317 0 1 class Dehalococcoidia 8 0 1761 3 genus Dehalogenimonas 1 670486 11 0 823 1 Dehalogenimonas lykanthroporepellens species 552810 927 0 Dehalogenimonas formicexedens species 1 1839801 2530 0 1 order Dehalococcoidales 4 1202465 1 0 2529 3 family 1202464 1 genus Dehalococcoides 3 0 2529 7 61434 0 411 1 no rank 237581 1522671 411 0 1 species Dehalococcoides sp. UCH007 1 Dehalococcoides mccartyi species 2111 0 61435 0 2081 5 Caldilineae class 1 475962 20 13 475963 4 1 order Caldilineales 0 2061 475964 8 0 2048 3 1 Caldilineaceae family genus Caldilinea 1 2 2040 0 12 233191 133453 2028 0 1 Caldilinea aerophila species 2417 0 8 Thermomicrobia class 1 189775 26 0 574 Thermomicrobiales order 1 3 189776 4 0 570 1 Thermomicrobiaceae family 2 189777 3 0 567 1 genus 499 1 species Thermomicrobium roseum 567 0 500 85000 1817 0 subclass 4 85001 71 0 1817 order Sphaerobacterales 1 4 255728 suborder 3 1746 0 family Sphaerobacteraceae 1 3 1746 0 23 85002 31 2056 2 1 Sphaerobacter genus 0 1723 2057 0 1692 1 species Sphaerobacter thermophilus 0 3921542 1 phylum Actinobacteria 656 201174 164 5 class Thermoleophilia 1 0 3250 26 1497346 3224 0 4 1 Solirubrobacterales order 588673 81 3 1 family Conexibacteraceae 3143 0 32 320583 3111 0 2 genus Conexibacter 1 191494 75 1 Conexibacter woesei species 0 3036 191495 1752188 993 0 4 no rank 1848754 0 212 Actinobacteria bacterium IMCC19121 species 1 1848755 0 402 Actinobacteria bacterium IMCC26077 species 1 1848255 Actinobacteria bacterium IMCC25003 species 1 0 239 1848756 0 140 species Actinobacteria bacterium IMCC26103 1 0 2145 7 1 class Acidimicrobiia 84992 14 84993 84 2131 0 6 1 Acidimicrobiales order 5 84994 1 Acidimicrobiaceae family 3 0 460 5 53634 2 Acidimicrobium genus 1 455 0 53635 450 0 species Acidimicrobium ferrooxidans 1 family 2 1587 0 2448023 682522 15 0 1587 genus Ilumatobacter 1 2 1572 0 species Ilumatobacter coccineus 1 467094 155247 0 33 Coriobacteriia class 1 84998 1655 1492 1643822 order Eggerthellales 1 18 0 109711 12532 1643826 17 family Eggerthellaceae 1 0 108219 13 447020 1 genus Adlercreutzia 2 0 20532 20519 0 1 Adlercreutzia equolifaciens species 446660 Cryptobacterium genus 1 2 0 860 6 84162 854 0 species Cryptobacterium curtum 1 84163 1981050 1 5693 0 2 genus Phoenicibacter 1 1944646 Phoenicibacter massiliensis species 1 0 5692 0 7569 2 Slackia genus 1 84108 10 84110 0 7559 species Slackia heliotrinireducens 1 22781 0 3 1 Gordonibacter genus 644652 116 0 9854 1 species Gordonibacter massiliensis 1841863 1335613 Gordonibacter urolithinfaciens species 1 0 12811 2 79603 2 1 Denitrobacterium genus 0 3865 79604 3863 0 1 Denitrobacterium detoxificans species 401 84111 1 Eggerthella genus 3 0 34387 2648737 4490 0 1 no rank 4490 0 1 Eggerthella sp. YY7918 species 502558 84112 1 species Eggerthella lenta 0 29496 order Coriobacteriales 1 14 43881 0 871 84999 1907 84107 6 Coriobacteriaceae family 1 0 21381 1 genus Collinsella 2 0 11597 81 102106 74426 1 species Collinsella aerofaciens 11516 0 33870 9 2993 0 2 genus Coriobacterium 1 2984 0 Coriobacterium glomerans species 1 33871 no rank 1 0 4884 84113 1531429 species Coriobacteriaceae bacterium 68-1-3 1 0 4884 1643824 703 0 21629 7 1 family Atopobiaceae 2767353 1 genus 0 1273 1 species Atopobium parvulum 0 1273 1382 1380 3 0 Atopobium genus 1 265 133925 4 1 Olsenella genus 19650 0 133926 6054 0 Olsenella uli species 1 Olsenella sp. Marseille-P2300 species 1 0 10113 1805478 3218 0 1 no rank 2638792 712411 3218 0 species Olsenella sp. oral taxon 807 1 0 3756873 600 Actinobacteria class 1 1760 8745 1 Micromonosporales order 20 32147 0 76 85008 524 28056 19 1 family Micromonosporaceae 0 32071 1 genus Salinispora 3 0 3427 46 168694 1425 0 1 Salinispora tropica species 168695 0 1956 Salinispora arenicola species 1 168697 Micromonospora genus 1 4 7525 0 199 1873 1003110 Verrucosispora maris species 1 1980 0 2617518 1 no rank 2881 0 648999 Micromonospora sp. L5 species 1 0 2881 47850 0 2465 1 Micromonospora aurantiaca species 315 1865 Actinoplanes genus 1 6 13512 0 2697 0 1 species Actinoplanes missouriensis 1866 196914 0 2793 1 species Actinoplanes friuliensis 7707 0 3 no rank 2626549 649831 1 Actinoplanes sp. N902-109 species 0 2979 0 2364 1 species Actinoplanes sp. SE50/110 134676 2033844 2364 0 Actinoplanes sp. SE50 species 1 673534 185 0 7080 1 Plantactinospora genus 4 2631981 6895 0 3 no rank Plantactinospora sp. KBS50 species 1 2601 0 2024580 2108470 2101 0 1 species Plantactinospora sp. BC1 2071627 species Plantactinospora sp. BB1 1 0 2193 84593 3 0 Verrucosispora genus 1 4 Actinopolysporales order 1 1583 0 7 622450 24 622451 3 1 family Actinopolysporaceae 1576 0 1849 19 1552 0 1 genus Actinopolyspora 2 1 species Actinopolyspora erythraea 1533 0 414996 0 180178 82 1 Streptomycetales order 85011 379 81 family Streptomycetaceae 1 0 179799 1157 2062 6632 1883 75 1 genus Streptomyces 0 167551 33903 1 Streptomyces avermitilis species 1839 0 3540 0 species group 2 629295 species subgroup 1 1729 0 1482596 Streptomyces griseus species 1 0 1729 1911 1482558 0 1811 species subgroup 1 1908 1811 0 1 Streptomyces globisporus species 164348 0 2141 Streptomyces puniciscabiei species 1 2593676 47972 0 no rank 24 465541 0 2071 Streptomyces sp. Mg1 species 1 1265601 0 1570 1 species Streptomyces sp. PAMC 26508 1961713 species Streptomyces sp. MOE7 1 2012 0 1837283 0 1569 1 Streptomyces sp. S8 species 1586 0 1 species Streptomyces sp. 4F 1751294 0 1974 1 Streptomyces sp. SAT1 species 1849967 1841249 0 2548 1 Streptomyces sp. RTd22 species 1561022 0 2012 1 species Streptomyces sp. CCM_MD2014 2094021 1929 0 1 Streptomyces sp. WAC00288 species 1531 0 1 species Streptomyces sp. SirexAA-E 862751 1906 0 1 species Streptomyces sp. Tue 6075 1661694 1262452 0 1974 1 species Streptomyces sp. 769 0 2638 1 species Streptomyces sp. M56 1495638 2135430 2073 0 1 species Streptomyces sp. P3 1 Streptomyces sp. TN58 species 1769 0 234612 1984801 1 species Streptomyces sp. CLI2509 1749 0 1 Streptomyces sp. 3211 species 0 1919 1964449 2059884 1 Streptomyces sp. CMB-StM0423 species 0 2439 0 2052 Streptomyces sp. fd1-xmd species 1 1812480 2174 0 1 species Streptomyces sp. Sge12 1972846 species Streptomyces sp. FR-008 1 0 1896 206662 444103 Streptomyces sp. CNQ-509 species 1 0 2240 1 Streptomyces sp. CFMR 7 species 1777 0 1649184 1725411 0 2564 species Streptomyces sp. CdTB01 1 Streptomyces pratensis species 1 0 1548 1169025 2275 0 species Streptomyces malaysiensis 1 92644 species group 2 3808 0 1477431 species Streptomyces coelicolor 1 0 2000 1902 0 1808 1 species Streptomyces sampsonii 42239 1889 1970 0 Streptomyces ambofaciens species 1 species Streptomyces griseochromogenes 1 2128 0 68214 2576 0 species Streptomyces leeuwenhoekii 1 1437453 68202 1505 0 species Streptomyces fulvissimus 1 1912 species Streptomyces hygroscopicus 1 0 5085 0 2118 1 Streptomyces formicae species 1616117 Streptomyces alboflavus species 1 0 2363 67267 Streptomyces albus species 1 3905 0 1888 species Streptomyces cyaneogriseus 1 1978 0 68192 species Streptomyces bingchenggensis 1 3120 0 379067 0 2215 1 species Streptomyces chartreusis 1969 1832 0 Streptomyces collinus species 1 42684 1 species Streptomyces alfalfae 1969 0 1642299 2405 0 1 Streptomyces vietnamensis species 362257 1038928 1801 0 species Streptomyces xinghaiensis 1 0 2253 Streptomyces albulus species 1 68570 1 species Streptomyces cattleya 0 2775 29303 1926 1910 0 species Streptomyces reticuli 1 0 1587 1 species Streptomyces peucetius 1950 1 species Streptomyces albireticuli 0 1890 1940 2070 0 species Streptomyces glaucescens 1 1907 1 Streptomyces gilvosporeus species 0 1978 553510 Streptomyces xiamenensis species 1 0 2116 408015 1755 0 1 Streptomyces clavuligerus species 1901 54571 species Streptomyces venezuelae 1 3679 0 1964 0 species Streptomyces parvulus 1 146923 1355015 0 1589 1 species Streptomyces pluripotens 1930 1 Streptomyces scabiei species 0 2309 0 1945 Streptomyces lavendulae species 1 1914 285473 1 Streptomyces rubrolavendulae species 1528 0 1783515 species Streptomyces sp. S10(2016) 1 1956 0 1 species Streptomyces lividans 2065 0 1916 Streptomyces autolyticus species 1 2197 0 75293 1790 0 1 Streptomyces niveus species 193462 1 Streptomyces pristinaespiralis species 0 2103 38300 1 Streptomyces violaceoruber species 1800 0 1935 3669 0 Streptomyces pactum species 1 68249 1 Streptomyces sp. XZHG99 species 0 1700 2049881 68280 1 species Streptomyces violaceusniger 2321 0 1806 0 species Streptomyces noursei 1 1971 1915 1 species Streptomyces lincolnensis 0 2291 47763 0 5780 Streptomyces lydicus species 1 127 2063 genus Kitasatospora 1 5 11091 0 1 species Kitasatospora setae 0 3004 2066 68173 Kitasatospora albolonga species 1 2214 0 1 species Kitasatospora aureofaciens 0 2401 1894 2633591 0 3345 no rank 1 Kitasatospora sp. MMS16-BH015 species 1 0 3345 2018025 85009 187 0 36568 order Propionibacteriales 1 33 31957 315 23532 0 19 family Propionibacteriaceae 1 5 1 Tessaracoccus genus 7798 0 66 72763 0 1501 Tessaracoccus flavus species 1 1610493 2635419 no rank 1 2016 0 1909732 Tessaracoccus sp. T2.5-30 species 1 0 2016 1877 0 Tessaracoccus flavescens species 1 399497 2338 0 species Tessaracoccus aquimaris 1 1332264 2 1 Acidipropionibacterium genus 2419 0 13 1912215 1748 1 species Acidipropionibacterium acidipropionici 0 2406 0 1352 genus 1 2801844 1352 0 Pseudopropionibacterium propionicum species 1 1750 203133 1 genus 0 2022 2633994 2022 0 1 no rank 0 2022 1 species Propionimicrobium sp. Marseille-P3275 1871034 21 29404 1 genus Microlunatus 2 0 1445 0 1424 1 Microlunatus phosphovorus species 29405 1912216 26 0 4612 1 Cutibacterium genus 4 Cutibacterium avidum species 1 0 2165 33010 1747 1339 0 1 Cutibacterium acnes species 33011 0 1082 1 species Cutibacterium granulosum 3 1 Propionibacterium genus 3569 0 45 1743 0 2871 species Propionibacterium freudenreichii 1 1744 2608905 1 no rank 653 0 species Propionibacterium sp. oral taxon 193 1 653 0 671223 12849 0 13 family Nocardioidaceae 1 85015 202 Aeromicrobium genus 1 2 0 1406 28 2040 1378 0 Aeromicrobium erythreum species 1 2041 61 1839 4 genus Nocardioides 1 0 4887 2045452 1383 0 species Nocardioides sp. 78 1 2615069 1854 0 no rank 1 196162 species Nocardioides sp. JS614 1 1854 0 450734 Nocardioides dokdonensis species 1 0 1589 116071 8 1953 0 2 genus Micropruina 1 species Micropruina glycogenica 1 0 1945 75385 40 182639 2 1 genus Kribbella 0 2117 182640 0 2077 Kribbella flavida species 1 0 2284 2 1 Pimelobacter genus 2044 36 2248 0 species Pimelobacter simplex 1 2045 622452 1816 0 3 order 0 1816 Kineosporiaceae family 1 3 83778 58 1758 0 2 genus Kineococcus 1 33981 6 131568 1752 0 species Kineococcus radiotolerans 1 order Bifidobacteriales 1 25 0 3032330 440 85004 24 1 Bifidobacteriaceae family 0 3031890 11107 31953 196081 genus 1 953 0 78259 1 species Scardovia inopinata 953 0 196082 2 1660 0 2 1 Parascardovia genus 0 1658 species Parascardovia denticolens 1 78258 0 1331 genus 1 2701 2702 1331 0 1 Gardnerella vaginalis species 19 genus Bifidobacterium 1 3016839 0 4954 1678 Bifidobacterium dentium species 1 9123 0 1689 0 135543 1 species Bifidobacterium breve 1685 0 3404 1 species Bifidobacterium choerinum 35760 33905 Bifidobacterium thermophilum species 1 0 5295 3884 0 1 Bifidobacterium animalis species 28025 28026 0 1367591 Bifidobacterium pseudocatenulatum species 1 469801 0 2 Bifidobacterium catenulatum species 1 1686 149843 319958 0 Bifidobacterium kashiwanohense subspecies 1 630129 Bifidobacterium indicum species 1 955 0 1691 216816 840463 0 Bifidobacterium longum species 1 1694 species Bifidobacterium pseudolongum 1 4415 0 892 0 species Bifidobacterium coryneforme 1 1687 158787 species Bifidobacterium scardovii 1 0 5787 1680 1 Bifidobacterium adolescentis species 0 71486 0 1405 species Bifidobacterium actinocoloniiforme 1 638619 1683 1 Bifidobacterium angulatum species 0 27356 1681 62774 0 1 Bifidobacterium bifidum species 0 1711 species Bifidobacterium asteroides 1 1684 6 85014 1 Glycomycetales order 4 2097 0 49 85034 family Glycomycetaceae 1 3 2091 0 0 2042 2 Stackebrandtia genus 1 283810 40 1 species Stackebrandtia nassauensis 0 2002 283811 85012 102 0 19824 1 order Streptosporangiales 16 2012 39 0 3078 3 1 Thermomonosporaceae family 0 3039 2 genus Thermomonospora 1 2019 75 2020 1 species Thermomonospora curvata 0 2964 7 1 family Nocardiopsaceae 7928 0 127 83676 1141 0 2 1 genus Thermobifida 83677 7 1 Thermobifida fusca species 1134 0 2021 2013 159 0 6660 4 genus Nocardiopsis 1 1 species Nocardiopsis gilva 2272 0 280236 1661 0 Nocardiopsis alba species 1 53437 2014 1 species Nocardiopsis dassonvillei 2568 0 90 2004 family Streptosporangiaceae 1 5 8716 0 0 5404 2 Nonomuraea genus 1 83681 64 0 5340 1 no rank 2593643 1 Nonomuraea sp. ATCC 55076 species 5340 0 1909395 2000 36 0 3222 2 1 Streptosporangium genus 2001 species Streptosporangium roseum 1 0 3186 0 24693 1 order Actinomycetales 20 2037 64 24629 0 19 Actinomycetaceae family 1 2049 4449 1653174 3 749 0 2 genus Actinotignum 1 1 Actinotignum schaalii species 746 0 59505 2 genus Trueperella 1 0 2601 44 1069494 0 2557 1 species Trueperella pyogenes 1661 1 Arcanobacterium genus 2 548 0 1 28263 28264 0 547 Arcanobacterium haemolyticum species 1 0 11699 Actinomyces genus 1 9 1654 244 1852377 0 718 Actinomyces pacaensis species 1 Actinomyces sp. VUL4_3 species 1 327 0 1912795 1 species Actinomyces gaoshouyii 1173 0 1960083 1750 0 species Actinomyces oris 1 544580 species Actinomyces radicidentis 1 0 2100 111015 no rank 3 0 5387 2609248 2235 0 1 Actinomyces sp. oral taxon 414 species 712122 1851395 species Actinomyces sp. Chiba101 1 1393 0 2081702 1759 0 Actinomyces sp. oral taxon 897 species 1 genus 1 1241 0 2529408 1241 0 Actinomyces meyeri species 1 52773 2050 109 0 3342 1 genus Mobiluncus 2 2051 3233 0 1 Mobiluncus curtisii species 4 1 Catenulisporales order 3349 0 29 414714 20 414877 3 family Catenulisporaceae 1 0 3320 79 414878 genus Catenulispora 1 2 3300 0 Catenulispora acidiphila species 1 3221 0 304895 1 no rank 0 420 52018 1650658 0 420 Actinobacteria bacterium IMCC26256 species 1 85006 1458 0 144884 order Micrococcales 1 146 83 85019 3 Brevibacteriaceae family 1 0 2651 1696 25 2568 0 2 1 Brevibacterium genus 1703 2543 0 Brevibacterium linens species 1 0 44967 47 Microbacteriaceae family 1 85023 572 337004 7 0 1059 1 Microcella genus 2 279828 0 1052 1 species Microcella alkaliphila 1 518733 2 1 Microterricola genus 1631 0 1 species Microterricola viridarii 0 1630 412690 229 0 genus 1 1434032 1 Pontimonas salivibrio species 0 229 1159327 0 1270 3 1 genus Rathayibacter 33886 26 33888 0 787 1 Rathayibacter tritici species Rathayibacter toxicus species 1 457 0 145458 1 genus Leifsonia 2 2843 0 65 110932 2778 0 1 Leifsonia xyli species 1575 7 447237 2 Frondihabitans genus 1 1580 0 2626248 1 no rank 0 1573 1 species Frondihabitans sp. PAMC 28766 0 1573 1795630 genus Aurantimicrobium 1 2 233 0 4 1705353 708131 species Aurantimicrobium minutum 1 229 0 Microbacterium genus 1 14 0 18720 475 33882 Microbacterium hominis species 1 0 1702 162426 8 no rank 0 11363 2609290 0 1618 species Microbacterium sp. PAMC 28756 1 1795053 2103230 0 1583 species Microbacterium sp. str. 'China' 1 1714373 1659 0 1 Microbacterium sp. No. 7 species 1906742 Microbacterium sp. BH-3-3-3 species 1 0 1376 1 Microbacterium sp. CGR1 species 0 1272 1696072 1421 0 Microbacterium sp. XT11 species 1 367477 0 1130 species Microbacterium sp. TPU 3598 1 1938334 1 Microbacterium sp. 1.5R species 1304 0 1916917 300019 1276 0 species Microbacterium paludicola 1 0 1610 species Microbacterium aurum 1 36805 species Microbacterium testaceum 1 1304 0 2033 species Microbacterium chocolatum 1 990 0 84292 1 genus Cryobacterium 3 0 3276 55 69578 670052 1720 0 1 species Cryobacterium arcticum 0 1501 no rank 1 2649013 1 species Cryobacterium sp. LW097 1501 0 1978566 2 no rank 658 0 1655488 1655489 658 0 clade 2 529883 genus 2 658 0 529884 0 327 1 species Rhodoluna lacicola Candidatus Rhodoluna planktonica species 1 0 331 535712 1759331 1 genus 0 1404 0 1404 1 species Cnuibacter physcomitrellae 1619308 10 33877 1 Agromyces genus 2 0 1649 453304 1639 0 Agromyces aureus species 1 genus Clavibacter 1 6 0 6081 396 1573 28447 1141 5685 0 5 species Clavibacter michiganensis 1 Clavibacter capsici subspecies 1 1178 0 1874630 subspecies Clavibacter insidiosus 1 0 1086 33014 31963 1 subspecies Clavibacter nebraskensis 857 0 1 subspecies Clavibacter sepedonicus 0 1423 31964 2034 57 0 3762 4 genus Curtobacterium 1 257496 0 2457 no rank 2 species Curtobacterium sp. MR_MD2014 1 1150 0 1561023 0 1307 Curtobacterium sp. BH-2-1-1 species 1 1905847 69373 1248 0 Curtobacterium pusillum species 1 0 5740 9 Intrasporangiaceae family 1 85021 65 11 53357 Intrasporangium genus 1 2 0 1004 53358 1 Intrasporangium calvum species 993 0 53457 29 1148 0 1 genus Janibacter 2 857417 Janibacter indicus species 1 1119 0 1 genus Serinicoccus 2 1583 0 68 265976 1 Serinicoccus sp. JLT9 species 1515 0 1758689 49 267408 1 genus Arsenicicoccus 2 0 1940 no rank 1 0 1891 2663846 1658671 1 species Arsenicicoccus sp. oral taxon 190 0 1891 85022 2 331 0 1 family Jonesiaceae 3 5 43673 2 1 Jonesia genus 0 329 43674 species Jonesia denitrificans 1 324 0 Dermatophilaceae family 1 3 384 0 3 85018 1 1862 2 1 genus Dermatophilus 0 381 1863 380 0 Dermatophilus congolensis species 1 2520 1268 family Micrococcaceae 1 39 55416 0 4461 0 4 1 Pseudarthrobacter genus 1742993 37 121292 species Pseudarthrobacter sulfonivorans 1 0 1665 1 Pseudarthrobacter phenanthrenivorans species 1274 0 361575 85085 1 species Pseudarthrobacter chlorophenolicus 0 1485 0 1957 1 genus Micrococcus 2 1269 26 1931 0 1 species Micrococcus luteus 1270 1645 0 424 genus 1 1 species Renibacterium salmoninarum 424 0 1646 24 32207 1 Rothia genus 3 12173 0 2047 0 779 species Rothia dentocariosa 1 species Rothia mucilaginosa 1 0 11370 43675 22137 0 genus Arthrobacter 1 15 1663 547 2535 0 species Arthrobacter alpinus 1 656366 Arthrobacter crystallopoietes species 1 0 1871 37928 235627 no rank 12 17184 0 1487 0 1 Arthrobacter sp. PAMC 25486 species 1494608 1806905 1 species Arthrobacter sp. ZXY-2 0 1078 1946 0 species Arthrobacter sp. YC-RL1 1 1652545 1221 0 Arthrobacter sp. PGP41 species 1 2079227 1 species Arthrobacter sp. Rue61a 0 860 1118963 0 1659 1 Arthrobacter sp. FB24 species 290399 1147 0 1 species Arthrobacter sp. YN 2020486 1833 0 1 Arthrobacter sp. ERGS1:01 species 1704044 1849032 1397 0 1 Arthrobacter sp. U41 species 1357915 1 species Arthrobacter sp. QXT-31 0 1561 0 1943 1 Arthrobacter sp. LS16 species 1690248 1 species Arthrobacter sp. ATCC 21022 0 1052 1771959 0 1001 1 Paenarthrobacter genus 2 1742992 4 1 Paenarthrobacter aurescens species 0 997 43663 Sinomonas genus 1 2 1568 0 13 596707 37927 1 species Sinomonas atrocyanea 0 1555 18 1868332 2 1 Neomicrococcus genus 0 2185 556325 Neomicrococcus aestuarii species 1 2167 0 72 57493 1 genus Kocuria 4 4362 0 72000 Kocuria rhizophila species 1 0 1602 446860 0 1383 species Kocuria flava 1 species Kocuria palustris 1 0 1305 71999 2078575 genus 1 0 778 1618207 1 species Arthrobacter sp. IHBB 11108 0 778 1 Glutamicibacter genus 2 1850 0 11 1742989 1 Glutamicibacter arilaitensis species 1839 0 256701 0 11387 family Dermabacteraceae 1 11 85020 107 1 genus Devriesea 2 0 843 9 472568 472569 1 species Devriesea agamarum 0 834 36739 1 706 0 2 1 genus Dermabacter species Dermabacter vaginalis 1 705 0 1630135 9731 0 1 Brachybacterium genus 6 43668 192 43669 1 Brachybacterium faecium species 2190 0 1832 0 Brachybacterium sp. VM2412 species 1 2017484 1988 0 1 no rank 2623841 1903186 1 Brachybacterium sp. P6-10-X1 species 0 1988 0 1750 species Brachybacterium ginsengisoli 1 1331682 2017485 1779 0 1 species Brachybacterium sp. VR2415 145360 37 1499 0 3 1 Sanguibacteraceae family 2 1 Sanguibacter genus 1462 0 50 60919 60920 1 species Sanguibacter keddieii 1412 0 family Dermacoccaceae 1 7 4422 0 39 145357 2 1 genus Kytococcus 0 1396 21 57499 1276 species Kytococcus sedentarius 1 0 1375 0 1500 genus Luteipulveratus 1 2 745364 30 571913 1470 0 species Luteipulveratus mongoliensis 1 15 57495 2 1 Dermacoccus genus 1487 0 1274 species Dermacoccus nishinomiyaensis 1 0 1472 1 family Beutenbergiaceae 3 1515 0 2 125316 14 84756 1 Beutenbergia genus 2 1513 0 84757 1 Beutenbergia cavernae species 0 1499 6 1 Cellulomonadaceae family 0 6535 54 85016 1 genus Cellulomonas 5 0 6481 180 1707 1711 0 1759 Cellulomonas flavigena species 1 2620175 0 1196 no rank 1 1 Cellulomonas sp. PSBB021 species 1196 0 2003551 1708 1 species Cellulomonas fimi 1953 0 1393 0 1 Cellulomonas gilvus species 11 1 family Promicromonosporaceae 9 8495 0 130 85017 51 157920 3 1 genus Cellulosimicrobium 3318 0 1710 species Cellulosimicrobium cellulans 1 0 1650 2624466 0 1617 no rank 1 Cellulosimicrobium sp. TH-20 species 1 0 1617 1980001 0 1922 2 genus Xylanimonas 1 186188 9 0 1913 1 Xylanimonas cellulosilytica species 186189 54 254250 1 Isoptericola genus 3 3125 0 1 Isoptericola dokdonensis species 0 1747 372663 139208 1 species Isoptericola variabilis 1324 0 577468 84 0 2 no rank 1 2038 1 genus Tropheryma 2 0 84 2039 0 83 1 species Tropheryma whipplei 0 546 4 1 order Acidothermales 1643683 12 1 85032 3 1 family Acidothermaceae 534 0 Acidothermus genus 1 2 0 533 11 28048 522 0 1 species Acidothermus cellulolyticus 28049 7 1643684 4 1 Nakamurellales order 0 2158 1 Nakamurellaceae family 3 2151 0 43 85031 53460 19 2108 0 2 genus Nakamurella 1 53461 1 Nakamurella multipartita species 2089 0 7 2039638 1 order Candidatus Nanopelagicales 11 0 2716 0 2709 family 10 2162846 3 genus 571 0 2039639 1884634 species Candidatus Nanopelagicus limnes 1 0 166 species Candidatus Nanopelagicus abundans 1 0 194 1884916 0 211 1 Candidatus Nanopelagicus hibericus species 1884915 14 622681 7 Candidatus Planktophila genus 1 2138 0 247 0 Candidatus Planktophila vernalis species 1 1884907 1884904 0 401 species Candidatus Planktophila sulfonica 1 1884905 547 0 1 species Candidatus Planktophila versatilis 0 366 1 Candidatus Planktophila lacus species 1884913 573600 171 0 Candidatus Planktophila limnetica species 1 1 species Candidatus Planktophila dulcis 0 392 1884914 1643818 no rank 2 1500 0 Thermobispora genus 1 2 0 1500 9 147067 2006 1 species Thermobispora bispora 0 1491 107 85010 1 order Pseudonocardiales 42 0 63498 63391 0 41 Pseudonocardiaceae family 1 2070 909 2 1 Alloactinosynnema genus 1960 0 7 674734 2636053 1953 0 1 no rank 1953 0 species Alloactinosynnema sp. L-07 1 1653480 1242 0 genus Prauserella 1 2 142577 11 0 1231 Prauserella marina species 1 530584 13 1835 1 Saccharopolyspora genus 2 0 2607 1836 1 Saccharopolyspora erythraea species 0 2594 2029 40 0 2278 genus Kibdelosporangium 1 2 0 2238 species Kibdelosporangium phytohabitans 1 860235 genus Pseudonocardia 1 8 13308 0 385 1847 2153 0 1 Pseudonocardia dioxanivorans species 240495 2619320 no rank 6 0 10770 1867 0 1 species Pseudonocardia sp. EC080610-09 1688404 1641402 Pseudonocardia sp. HH130629-09 species 1 0 1688 1096856 0 1859 1 Pseudonocardia sp. EC080619-01 species 0 1786 1 Pseudonocardia sp. EC080625-04 species 1096868 1690815 Pseudonocardia sp. HH130630-07 species 1 1653 0 Pseudonocardia sp. AL041005-10 species 1 0 1917 445576 150 65496 6 1 genus Actinoalloteichus 8762 0 Actinoalloteichus sp. ADI127-7 species 1 2017 0 1612552 Actinoalloteichus hymeniacidonis species 1 0 1276 340345 1470176 1819 0 1 Actinoalloteichus hoggarensis species 3500 0 no rank 2 2644606 0 1485 1 species Actinoalloteichus sp. AHMU CJ021 2072503 1612551 Actinoalloteichus sp. GBA129-24 species 1 0 2015 7 Amycolatopsis genus 1 0 16363 280 1813 1 Amycolatopsis japonica species 2141 0 208439 species Amycolatopsis methanolica 1 2289 0 1814 species Amycolatopsis mediterranei 1 0 2862 33910 2618356 2 no rank 0 4693 1911175 Amycolatopsis sp. BJA-103 species 1 1932 0 2761 0 species Amycolatopsis sp. AA4 1 1896961 Amycolatopsis orientalis species 1 4098 0 31958 2071 15 2524 0 genus Saccharothrix 1 2 103731 2509 0 1 Saccharothrix espanaensis species 2 1 Kutzneria genus 3621 0 18 43356 species Kutzneria albida 1 0 3603 43357 20 165301 2 Lentzea genus 1 0 2648 species Lentzea guizhouensis 1 0 2628 1586287 genus Actinosynnema 1 3 6212 0 137 40566 species Actinosynnema mirum 1 0 2993 40567 42197 1 Actinosynnema pretiosum species 3082 0 2 genus Saccharomonospora 1 957 0 9 1851 1852 948 0 1 Saccharomonospora viridis species 7 1643682 order Geodermatophilales 1 8 0 5824 105 85030 7 Geodermatophilaceae family 1 5817 0 2 1 genus Modestobacter 0 2509 27 88138 species Modestobacter marinus 1 0 2482 477641 1860 40 1776 0 Geodermatophilus genus 1 2 1736 0 1 Geodermatophilus obscurus species 1861 genus Blastococcus 1 2 1427 0 16 38501 138336 0 1411 1 species Blastococcus saxobsidens 85007 1421 0 184215 163 1 order Corynebacteriales 22 316606 3 family Segniliparaceae 1 949 0 927 0 2 1 Segniliparus genus 286801 11 1 Segniliparus rotundus species 916 0 286802 family Tsukamurellaceae 1 4 2916 0 25 85028 2060 69 2891 0 3 1 Tsukamurella genus 57704 1809 0 1 Tsukamurella tyrosinosolvens species 2061 1 Tsukamurella paurometabola species 1013 0 57 family Mycobacteriaceae 1 64957 0 269 1762 19309 0 genus 13 1866885 1800 Mycobacterium chubuense species 1 0 1318 758802 1431 0 Mycobacterium litorale species 1 1771 1584 0 species Mycobacterium phlei 1 1 species Mycobacterium thermoresistibile 0 1691 1797 species Mycobacterium neoaurum 1 1330 0 1795 1772 2073 0 1 Mycobacterium smegmatis species 36814 Mycobacterium rhodesiae species 1 1069 0 1766 species Mycobacterium fortuitum 1 0 1029 Mycobacterium vanbaalenii species 1 0 1310 110539 1810 1527 0 1 Mycobacterium vaccae species Mycobacterium aurum species 1 1813 0 1791 134601 0 1782 Mycobacterium goodii species 1 1 species Mycobacterium gilvum 0 1352 1804 genus 2 2616 0 1073531 1788 1 Mycobacterium terrae species 0 1209 875328 species Mycobacterium sinense 1 0 1407 0 723 1 genus Hoyosella 2 697025 2 639313 1 species Hoyosella subflava 0 721 670516 5 genus 5394 0 83262 1 Mycobacterium immunogenum species 871 0 1 species Mycobacterium saopaulense 795 0 1578165 1 Mycobacterium chelonae species 0 755 1774 0 919 Mycobacterium stephanolepidis species 1 1520670 36809 2054 0 Mycobacterium abscessus species 1 1 Mycobacterium genus 34 0 36646 2854 1763 708 0 1 species Mycobacterium haemophilum 29311 2249310 species group 1 0 1042 722731 1042 0 Mycobacterium shigaense species 1 482462 1490 0 species Mycobacterium dioxanotrophicus 1 270 0 Mycobacterium leprae species 1 1769 1768 species Mycobacterium kansasii 1 0 1424 0 3259 species group 4 77643 1773 887 2471 0 3 Mycobacterium tuberculosis species 1 Mycobacterium africanum biotype 1 785 0 33894 1765 1 biotype Mycobacterium bovis 0 799 78331 0 788 species Mycobacterium canettii 1 0 15356 13 no rank 2642494 1 Mycobacterium sp. MCS species 1225 0 164756 Mycobacterium sp. WY10 species 1 1460 0 1920667 1003 0 1 species Mycobacterium sp. VKM Ac-1817D 1273687 164757 0 1200 species Mycobacterium sp. JLS 1 1330 0 1 species Mycobacterium sp. NRRL B-3805 1570328 1879023 1886 0 1 species Mycobacterium sp. djl-10 Mycobacterium sp. KMS species 1 0 1279 189918 1682113 species Mycobacterium sp. YC-RL4 1 0 1413 693 0 1 species Mycobacterium sp. QIA-37 1561223 1545728 0 1198 1 species Mycobacterium sp. EPa45 0 306 Mycobacterium sp. MOTT36Y species 1 1168287 212767 Mycobacterium sp. JS623 species 1 1166 0 2051552 0 1197 1 Mycobacterium sp. PYR15 species Mycobacterium marinum species 1 0 1082 1781 1809 1108 0 1 Mycobacterium ulcerans species 120793 8 species group 7165 0 1 Mycobacterium colombiense species 1577 0 339268 1767 436 0 1974 4 1 Mycobacterium intracellulare species 0 418 1 subspecies Mycobacterium yongonense 1203599 774 0 1 subspecies Mycobacterium chimaera 222805 35617 346 0 1 subspecies Mycobacterium indicus pranii 329 0 1 species Mycobacterium paraintracellulare 1138383 0 2513 1 species Mycobacterium avium 1764 701042 Mycobacterium marseillense species 1 0 772 888 0 Mycobacterium liflandii species 1 261524 85026 108 8295 0 1 Gordoniaceae family 9 0 8187 1 genus Gordonia 8 2053 179 species Gordonia phthalatica 1 0 1202 1136941 1 species Gordonia bronchialis 1014 0 2054 2657482 0 2139 no rank 2 337191 1180 0 Gordonia sp. KTR9 species 1 2059875 Gordonia sp. YC-JH1 species 1 959 0 Gordonia terrae species 1 1294 0 2055 1004901 1 species Gordonia iterans 0 1047 84595 0 1312 Gordonia polyisoprenivorans species 1 1 family Nocardiaceae 31 45094 0 261 85025 293 1817 Nocardia genus 1 7 16919 0 1 species Nocardia seriolae 0 2336 37332 3874 0 species Nocardia brasiliensis 1 37326 3991 0 Nocardia cyriacigeorgica species 1 135487 1 species Nocardia farcinica 2537 0 37329 37330 species Nocardia nova 1 0 1617 455432 1 Nocardia terpenica species 2271 0 23 Rhodococcus genus 1 27914 0 1192 1827 43767 Rhodococcus hoagii species 1 0 1448 192944 12 no rank 0 12003 1807790 Rhodococcus sp. BH4 species 1 685 0 935199 Rhodococcus sp. p52 species 1 0 1148 Rhodococcus sp. B7740 species 1 1081 0 1564114 0 634 Rhodococcus sp. WMMA185 species 1 679318 817 0 1 species Rhodococcus sp. YL-1 1045808 1 species Rhodococcus sp. H-CA8f 643 0 1727214 0 963 1 species Rhodococcus sp. 2G 1570939 Rhodococcus sp. WB1 species 1 0 1848 1033922 1 species Rhodococcus sp. PBTS 1 0 1149 1653478 1653479 1 Rhodococcus sp. PBTS 2 species 0 954 0 1296 1 Rhodococcus sp. MTM3W5.2 species 1805827 1723645 Rhodococcus sp. 008 species 1 0 785 1833 species Rhodococcus erythropolis 1 864 0 334542 species Rhodococcus qingshengii 1 868 0 132919 1 species Rhodococcus jostii 0 1514 0 1308 Rhodococcus pyridinivorans species 1 103816 species Rhodococcus opacus 1 0 3343 37919 1 species Rhodococcus fascians 1035 0 1828 Rhodococcus rhodochrous species 1 1218 0 1829 1 Rhodococcus aetherivorans species 1638 0 191292 1483 0 1 Rhodococcus ruber species 1830 697024 479 0 no rank 2 2 genus Lawsonella 1 479 0 1 1847725 1 Lawsonella clevelandensis species 0 478 1528099 7 85029 4 Dietziaceae family 1 0 1695 40 37914 1 genus Dietzia 3 1688 0 875 0 no rank 1 2617939 species Dietzia sp. oral taxon 368 1 0 875 712270 Dietzia timorensis species 1 773 0 499555 58409 0 52 family Corynebacteriaceae 1 1653 631 57778 0 genus Corynebacterium 1 51 1716 1539 203263 859 0 Corynebacterium aquilae species 1 1 species Corynebacterium crudilactis 602 0 1652495 1231000 species Corynebacterium lactis 1 1049 0 1404244 1 Corynebacterium glyciniphilum species 941 0 571915 0 733 species Corynebacterium mustelae 1 0 1925 Corynebacterium halotolerans species 1 225326 Corynebacterium callunae species 1 857 0 1721 1 species Corynebacterium diphtheriae 910 0 1717 1 Corynebacterium cystitidis species 0 466 35757 529 0 1 [Brevibacterium] flavum species 92706 349751 1 species Corynebacterium marinum 1618 0 968 0 Corynebacterium casei species 1 160386 no rank 2 1854 0 2624378 929 0 1 species Corynebacterium sp. ATCC 6931 1487956 702967 Corynebacterium sp. NML98-0116 species 1 925 0 1223514 1776 0 1 species Corynebacterium humireducens 553 0 species Corynebacterium pseudotuberculosis 1 1719 169292 1 species Corynebacterium aurimucosum 1085 0 42817 0 503 species Corynebacterium argentoratense 1 1718 1 Corynebacterium glutamicum species 0 1302 585 0 Corynebacterium flavescens species 1 28028 146827 Corynebacterium simulans species 1 0 1670 1705 0 730 1 Corynebacterium stationis species 655 0 Corynebacterium resistens species 1 258224 1 Corynebacterium deserti species 696 0 1408191 1813 0 Corynebacterium frankenforstense species 1 1230998 species Corynebacterium doosanense 1 0 1334 1121358 1959 0 1 species Corynebacterium jeikeium 38289 38305 2236 0 1 species Corynebacterium vitaeruminis 65058 712 0 1 Corynebacterium ulcerans species 1 Corynebacterium uterequi species 1199 0 1072256 89154 1 Corynebacterium terpenotabidum species 923 0 1 species Corynebacterium maris 0 1159 575200 43770 0 3512 species Corynebacterium striatum 1 0 1372 Corynebacterium efficiens species 1 152794 136857 1 species Corynebacterium testudinoris 807 0 161899 1 species Corynebacterium singulare 1146 0 156978 0 1267 1 species Corynebacterium imitans 187491 1 species Corynebacterium glaucum 1060 0 1050174 0 579 Corynebacterium epidermidicanis species 1 1514 0 Corynebacterium variabile species 1 1727 species Corynebacterium phocae 1 786 0 161895 Corynebacterium ureicelerivorans species 1 0 1069 401472 191610 species Corynebacterium atypicum 1 0 751 0 821 species Corynebacterium camporealensis 1 161896 35755 0 207 1 Corynebacterium kutscheri species 0 1663 species Corynebacterium falsenii 1 108486 43771 2572 0 Corynebacterium urealyticum species 1 0 1604 1 species Corynebacterium sphenisci 191493 161879 1 species Corynebacterium kroppenstedtii 471 0 0 837 Corynebacterium ammoniagenes species 1 1697 7 Frankiales order 1 7782 0 32 85013 159 74712 6 Frankiaceae family 1 7750 0 1 Frankia genus 5 7591 0 175 1854 0 1971 species Frankia alni 1 1859 1125 0 Frankia casuarinae species 1 106370 298654 2266 0 1 Frankia inefficax species 2632575 1 no rank 0 2054 2054 0 1 species Frankia sp. EAN1pec 298653 2870 0 class Rubrobacteria 1 6 84995 30 48 84996 5 Rubrobacterales order 1 0 2840 30 84997 1 family Rubrobacteraceae 4 2792 0 Rubrobacter genus 1 3 2762 0 77 42255 49319 0 1676 Rubrobacter xylanophilus species 1 42256 0 1009 1 species Rubrobacter radiotolerans 35990 0 101 1 phylum Tenericutes 544448 2 894 0 2 no rank 2799557 2 1 Candidatus Izimaplasma genus 894 0 1 1912503 2624196 893 0 1 no rank Candidatus Izimaplasma sp. HR1 species 1 893 0 1541959 0 31980 class Mollicutes 1 96 31969 49 0 11689 Mycoplasmatales order 1 43 2085 75 50 2092 1 family Mycoplasmataceae 42 0 11614 2767358 0 3610 12 genus species Mycoplasma cynos 1 0 243 171284 29555 0 340 Mycoplasma canis species 1 2113 0 207 Mycoplasma californicum species 1 species Mycoplasma arginini 1 318 0 2094 Mycoplasma pullorum species 1 252 0 48003 249 0 species Mycoplasma bovigenitalium 1 2112 29553 Mycoplasma bovirhinis species 1 188 0 Mycoplasma bovis species 1 0 516 28903 2110 365 0 Mycoplasma agalactiae species 1 0 336 species Mycoplasma fermentans 1 2115 2109 Mycoplasma synoviae species 1 273 0 2107 1 Mycoplasma pulmonis species 323 0 27 1 genus Mycoplasma 0 7380 102 2093 45362 0 191 species Mycoplasma bovoculi 1 1 species Mycoplasma dispar 173 0 86660 species Mycoplasma canadense 1 267 0 29554 2118 species Mycoplasma mobile 1 255 0 2096 Mycoplasma gallisepticum species 1 0 251 656088 species group 3 0 2011 1098 0 species Mycoplasma mycoides 1 2102 2095 456 0 Mycoplasma capricolum species 1 2105 species Mycoplasma leachii 1 0 457 51365 Mycoplasma yeatsii species 1 564 0 57372 244 0 1 species Mycoplasma suis 1 species Mycoplasma genitalium 74 0 2097 0 70 species Mycoplasma pneumoniae 1 2104 2098 Mycoplasma hominis species 1 0 488 0 234 Mycoplasma putrefaciens species 1 2123 1 no rank 0 495 2683645 495 0 Mycoplasma sp. (ex Biomphalaria glabrata) species 1 1749074 2099 Mycoplasma hyopneumoniae species 1 0 279 0 46 1 species Mycoplasma ovis 171632 28227 species Mycoplasma penetrans 1 0 425 0 232 Mycoplasma hyorhinis species 1 2100 269 0 species Mycoplasma crocodyli 1 50052 2111 0 289 1 Mycoplasma arthritidis species 1 Mycoplasma wenyonii species 0 44 65123 136241 0 64 Mycoplasma haemocanis species 1 984991 0 94 Mycoplasma parvum species 1 0 141 species Mycoplasma flocculare 1 2128 0 78 Mycoplasma haemofelis species 1 29501 0 574 2 genus 2129 282 0 Ureaplasma parvum species 1 134821 2130 0 292 Ureaplasma urealyticum species 1 27 186328 39 1 order Entomoplasmatales 0 14130 33925 10 0 4797 14 1 Entomoplasmataceae family 46238 5 0 1157 genus Entomoplasma 1 5 0 380 species Entomoplasma melaleucae 1 81459 214888 species Entomoplasma luminosum 1 0 283 320 0 1 Entomoplasma somnilux species 215578 1 Entomoplasma freundtii species 0 169 74700 61 46239 8 1 Mesoplasma genus 3630 0 0 636 1 Mesoplasma florum species 2151 2149 1 species Mesoplasma entomophilum 299 0 138853 1 Mesoplasma lactucae species 808 0 324078 1 species Mesoplasma coleopterae 379 0 225999 Mesoplasma syrphidae species 1 744 0 219745 340 0 species Mesoplasma tabanidae 1 1 species Mesoplasma chauliocola 0 363 216427 12 2131 1 family Spiroplasmataceae 24 9306 0 2132 391 0 9294 23 1 genus Spiroplasma Spiroplasma eriocheiris species 1 0 523 315358 382 0 Spiroplasma taiwanense species 1 2145 216945 0 248 1 Spiroplasma syrphidicola species 2144 1 species Spiroplasma mirum 420 0 444 0 1 species Spiroplasma sabaudiense 216944 362837 0 494 1 Spiroplasma cantharicola species 601 0 1 Spiroplasma culicicola species 216935 340 0 species Spiroplasma monobiae 1 2136 47834 371 0 1 Spiroplasma kunkelii species 1 Spiroplasma chrysopicola species 308 0 216933 2 no rank 700 0 2637901 1914410 0 350 species Spiroplasma sp. NBRC 100390 1 species Spiroplasma sp. TU-14 1 0 350 1898044 1114980 0 432 species Spiroplasma atrichopogonis 1 Spiroplasma corruscae species 1 340 0 216934 2137 species Spiroplasma apis 1 0 254 species Spiroplasma helicoides 1 0 431 216938 Spiroplasma floricola species 1 530 0 216937 1 Spiroplasma turonicum species 432 0 216946 2139 377 0 1 species Spiroplasma clarkii 216942 442 0 1 species Spiroplasma litorale 0 385 Spiroplasma diminutum species 1 216936 2133 449 0 species Spiroplasma citri 1 33 186329 1 order Acholeplasmatales 13 0 6112 30 2146 Acholeplasmataceae family 1 12 6079 0 70 2147 5 genus Acholeplasma 1 0 4690 Acholeplasma palmae species 1 1260 0 38986 2148 0 1162 1 Acholeplasma laidlawii species 35623 0 1222 1 species Acholeplasma oculi 976 0 Acholeplasma brassicae species 1 61635 33926 76 0 1359 genus Candidatus Phytoplasma 1 6 species group 1 299 0 85632 59748 0 299 species Candidatus Phytoplasma australiense 1 3 species group 0 741 85620 229545 217 0 1 Aster yellows witches'-broom phytoplasma species 0 260 Maize bushy stunt phytoplasma species 1 202462 100379 1 Onion yellows phytoplasma species 0 264 1 species group 243 0 85630 37692 243 0 1 species Candidatus Phytoplasma mali 3114 0 no rank 2 713063 0 1540 species Tenericutes bacterium MO-XQ 1 1911684 1911683 1574 0 1 species Tenericutes bacterium MZ-XQ 1798711 150 clade 63966 0 150 Cyanobacteria phylum 1 63966 0 21 1117 subclass 43 13684 0 1301283 23 1 order Chroococcales 0 7750 7 1118 1890452 1 0 992 1 family Cyanobacteriaceae 2 102234 991 0 genus 1 379064 0 991 species Cyanobacterium aponinum 1 4 1 Microcystaceae family 1503 0 15 1890449 1125 39 1488 0 3 1 Microcystis genus 0 934 1 species Microcystis aeruginosa 1126 1 no rank 515 0 2643300 1967666 0 515 Microcystis sp. MC19 species 1 1890464 2 2190 0 7 1 Chroococcaceae family 268175 1 genus 439 0 1 no rank 439 0 2648896 0 439 Chondrocystis sp. NIES-4102 species 1 2005460 9 102231 genus Gloeocapsa 1 2 359 0 2623012 0 350 1 no rank 1173026 350 0 Gloeocapsa sp. PCC 7428 species 1 13 669357 1 Geminocystis genus 3 1390 0 2 no rank 0 1377 2625037 species Geminocystis sp. NIES-3709 1 0 544 1617448 0 833 Geminocystis sp. NIES-3708 species 1 1615909 1890450 1 3058 0 Aphanothecaceae family 1 9 2546365 0 888 2 genus 888 0 species 2 2546366 strain Cyanothece sp. PCC 8801 1 434 0 41431 395962 Cyanothece sp. PCC 8802 strain 1 0 454 2 genus 0 1164 28070 species 1 525 0 2546359 497965 Cyanothece sp. PCC 7822 strain 1 525 0 1 species 0 639 2546356 639 0 1 strain Cyanothece sp. PCC 7424 65393 genus 1 0 213 1453359 species Candidatus Atelocyanobacterium thalassa 1 0 213 713887 1 genus 409 0 263510 409 0 species 1 2546360 43989 1 Cyanothece sp. ATCC 51142 strain 409 0 92682 2 no rank 383 0 Halothece genus 1 2 383 0 3 76023 2632878 1 no rank 380 0 65093 species Halothece sp. PCC 7418 1 380 0 1150 42 5934 0 20 1 Oscillatoriales order 1 family Oscillatoriaceae 6 1711 0 13 1892254 12 1158 3 1 Oscillatoria genus 1119 0 0 525 Oscillatoria nigro-viridis species 1 482564 118323 species Oscillatoria acuminata 1 582 0 0 579 Moorea genus 1 2 1155738 3 1155739 1 species Moorea producens 576 0 3 1 Coleofasciculaceae family 1396 0 6 1892251 0 1390 1 Geitlerinema genus 2 63132 10 1 no rank 1380 0 2648775 1173025 1 Geitlerinema sp. PCC 7407 species 1380 0 614 0 Gomontiellaceae family 1 2 1892255 27 587 0 genus 1 241421 241425 0 587 species Crinalium epipsammum 1 0 751 family Cyanothecaceae 1 3 1892249 13 43988 65 738 0 2 genus Cyanothece 1 2649277 673 0 1 no rank 395961 Cyanothece sp. PCC 7425 species 1 0 673 4 1892252 5 1 family Microcoleaceae 0 1420 0 757 1 Trichodesmium genus 2 1205 4 1206 753 0 1 species Trichodesmium erythraeum 44471 8 0 659 Microcoleus genus 1 2 2642155 no rank 1 0 651 1 species Microcoleus sp. PCC 7113 651 0 1173027 1 order Pleurocapsales 7 1434 0 3 52604 0 943 Dermocarpellaceae family 1 4 1890498 1 102115 4 0 942 Stanieria genus 1 3 2642663 1 no rank 0 458 species Stanieria sp. NIES-3757 1 458 0 1807358 1 Stanieria cyanosphaera species 0 480 102116 1890500 7 0 488 2 1 family Hyellaceae 44474 1 genus 0 481 481 0 1 Pleurocapsa minor species 54308 31 1 Nostocales order 0 13783 31 1161 13 1892263 2 1 family Hapalosiphonaceae 0 501 1190 488 0 genus 1 0 488 no rank 1 494603 1752063 0 488 1 Fischerella sp. NIES-3754 species 2661849 family 8 4183 0 4183 0 8 Calothrix genus 1 1186 39 32054 0 518 Calothrix parietina species 1 6 no rank 0 3626 2619626 2005461 0 801 Calothrix sp. NIES-4101 species 1 2005462 1 Calothrix sp. NIES-3974 species 410 0 1 species Calothrix sp. NIES-4071 961 0 2005469 99598 360 0 species Calothrix sp. PCC 7507 1 457 0 Calothrix sp. 336/3 species 1 1337936 species Calothrix sp. NIES-2098 1 637 0 1954171 1219117 0 523 no rank 1 1 species Nostocales cyanobacterium HT-58-2 0 523 1940762 family Nostocaceae 1 16 7478 0 17 1162 75 1177 1 Nostoc genus 10 0 4670 272131 1 Nostoc punctiforme species 520 0 1306274 0 846 1 species Nostoc flagelliforme 2593658 3229 0 no rank 7 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1 0 514 1261031 1751286 species Nostoc sp. NIES-3756 1 0 447 1869241 0 493 species Nostoc sp. CENA543 1 28072 Nostoc sp. PCC 7524 species 1 0 460 1618022 524 0 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 317936 0 338 Nostoc sp. PCC 7107 species 1 Nostoc sp. PCC 7120 species 1 0 453 103690 1163 genus 3 0 1953 species Anabaena cylindrica 1 0 606 1165 2619674 2 no rank 1347 0 0 771 species Anabaena sp. WA102 1 1647413 species Anabaena sp. 90 1 0 576 46234 264688 0 838 genus 2 species Trichormus variabilis 1 0 483 264691 1164 0 355 species Trichormus azollae 1 1185 5 1067 0 family Rivulariaceae 1 3 7 373984 2 genus Rivularia 1 0 1062 2676603 1055 0 no rank 1 373994 Rivularia sp. PCC 7116 species 1 0 1055 312 1890424 Synechococcales order 1 57 0 31000 51 1890438 6 1 family Leptolyngbyaceae 0 3212 0 3161 1 Leptolyngbya genus 5 47251 14 1184 1 Leptolyngbya boryana species 0 699 2448 0 3 no rank 2650499 1 species Leptolyngbya sp. PCC 7376 531 0 111781 1752064 665 0 1 Leptolyngbya sp. NIES-3755 species 1080068 Leptolyngbya sp. O-77 species 1 0 1252 1890429 family 2 0 507 2 155977 genus Acaryochloris 1 2 507 0 505 0 1 Acaryochloris marina species 155978 400 0 family Pseudanabaenaceae 1 3 1890436 1 2 genus Pseudanabaena 1 399 0 6 1152 2593292 393 0 1 no rank 82654 species Pseudanabaena sp. PCC 7367 1 393 0 0 2494 5 1 family Prochloraceae 1213 1 1218 4 0 2493 4 1 genus Prochlorococcus no rank 2 443 0 2627481 1501269 1 species Prochlorococcus sp. MIT 0801 0 203 1 species Prochlorococcus sp. MIT 0604 0 240 1501268 1219 1 species Prochlorococcus marinus 2046 0 5 1 family Merismopediaceae 0 1436 4 1890428 4 1 Synechocystis genus 1432 0 33 1142 2640012 no rank 3 0 1399 2116702 455 0 1 species Synechocystis sp. IPPAS B-1465 1148 1 species Synechocystis sp. PCC 6803 0 455 1147 species Synechocystis sp. PCC 6714 1 489 0 139 1890426 family Synechococcaceae 1 33 21866 0 15436 0 26 Synechococcus genus 1 1129 286 325 0 Synechococcus lividus species 1 33070 no rank 23 0 14187 2626047 316279 Synechococcus sp. CC9902 species 1 0 239 1173263 1 Synechococcus sp. PCC 7502 species 0 295 1 species Synechococcus sp. PCC 8807 358 0 195248 species Synechococcus sp. PCC 7117 1 343 0 195498 1 Synechococcus sp. CC9605 species 754 0 110662 species Synechococcus sp. PCC 6312 1 0 274 195253 0 788 species Synechococcus sp. JA-2-3B'a(2-13) 1 321332 0 741 1 species Synechococcus sp. WH 8103 29410 316278 0 885 Synechococcus sp. RCC307 species 1 species Synechococcus sp. KORDI-49 1 1158 0 585423 32051 1 Synechococcus sp. WH 7803 species 0 821 166314 703 0 1 species Synechococcus sp. WH 8109 1350461 625 0 1 Synechococcus sp. UTEX 2973 species 0 738 Synechococcus sp. KORDI-100 species 1 1280380 0 340 Synechococcus sp. PCC 7003 species 1 374981 1 Synechococcus sp. CC9311 species 0 249 64471 0 294 species Synechococcus sp. PCC 73109 1 374982 758 0 1 Synechococcus sp. WH 8102 species 84588 1 species Synechococcus sp. PCC 7002 0 406 32049 1827144 1 Synechococcus sp. NIES-970 species 365 0 1 Synechococcus sp. KORDI-52 species 549 0 585425 973 0 1 species Synechococcus sp. SynAce01 1916956 321327 1 species Synechococcus sp. JA-3-3Ab 1531 0 32046 0 638 species Synechococcus elongatus 1 146785 1 genus 449 0 0 449 1 species Thermosynechococcus elongatus 146786 1 Cyanobium genus 3 5401 0 103 167375 species Cyanobium gracile 1 0 2503 59930 1 no rank 2795 0 2627006 1851505 0 2795 1 Cyanobium sp. NIES-981 species 3 13034 1 Dactylococcopsis genus 2 441 0 1 Dactylococcopsis salina species 0 438 292566 2303730 family 2 0 773 1 genus Halomicronema 2 773 0 5 170610 1209493 1 Halomicronema hongdechloris species 0 768 1 no rank 273 0 1983111 1 species cyanobacterium endosymbiont of Epithemia turgida 273 0 718217 1890505 1 371 0 order Chroococcidiopsidales 1 4 1 1890528 3 Chroococcidiopsidaceae family 1 370 0 2 genus Chroococcidiopsis 1 0 369 7 54298 species Chroococcidiopsis thermalis 1 0 362 54299 307596 60 3400 0 1 class Gloeobacteria 6 1 order Gloeobacterales 5 3340 0 46 307595 Gloeobacteraceae family 1 4 0 3294 32 1890422 3262 0 3 Gloeobacter genus 1 33071 28 1 Gloeobacter kilaueensis species 0 1282 1416614 33072 Gloeobacter violaceus species 1 0 1952 531 1239 phylum Firmicutes 1 731 0 11387759 0 2815 5 1 class Limnochordia 1676648 32 2783 0 1 order Limnochordales 4 1676649 37 3 family Limnochordaceae 1 0 2746 29 1676650 1676651 67 2717 0 genus Limnochorda 1 2 1555112 Limnochorda pilosa species 1 2650 0 909932 92 0 92050 1 Negativicutes class 31 1843489 1555 25746 0 11 1 order Veillonellales 10 1 Veillonellaceae family 24191 0 1320 31977 39948 33 0 1321 1 genus Dialister 2 1288 0 species Dialister pneumosintes 1 39950 0 13735 1 Megasphaera genus 2 906 2473 0 11262 Megasphaera elsdenii species 1 907 36 29465 3 1 genus Veillonella 5891 0 248315 1 species Veillonella rodentium 0 2385 29466 0 3470 Veillonella parvula species 1 1 Negativicoccus genus 2 0 1924 3 909928 1921 0 1 species Negativicoccus massiliensis 1702287 909929 128 0 38314 1 Selenomonadales order 14 287 1843491 Selenomonadaceae family 1 9 34036 0 2 158846 1 genus Megamonas 2 2986 0 158847 Megamonas hypermegale species 1 0 2984 314 970 6 1 genus Selenomonas 0 30763 0 8226 species Selenomonas ruminantium 1 971 species Selenomonas sputigena 1 6610 0 69823 2637378 15613 0 no rank 3 6323 0 species Selenomonas sp. oral taxon 136 1 713030 4561 0 1 species Selenomonas sp. oral taxon 920 1884263 Selenomonas sp. oral taxon 478 species 1 4729 0 712538 4 Sporomusaceae family 1 4150 0 11 1843490 20 365348 3 1 Pelosinus genus 4139 0 2629460 1950 0 1 no rank 484770 1 species Pelosinus sp. UFO1 0 1950 365349 2169 0 1 species Pelosinus fermentans 140 1843488 1 order Acidaminococcales 5 0 27898 27758 0 4 1 family Acidaminococcaceae 909930 131 1 genus Acidaminococcus 3 0 27627 101 904 905 0 8549 Acidaminococcus fermentans species 1 18977 0 1 Acidaminococcus intestini species 187327 7 526524 11 1 class Erysipelotrichia 0 47258 65 526525 10 Erysipelotrichales order 1 0 47251 0 47186 9 Erysipelotrichaceae family 1 128827 279 27502 0 no rank 1 544447 species Erysipelotrichaceae bacterium I46 1 0 27502 1834207 191303 60 6614 0 2 1 Turicibacter genus no rank 1 0 6554 2638206 6554 0 Turicibacter sp. H121 species 1 1712675 1729679 28 0 9118 2 Faecalibaculum genus 1 0 9090 species Faecalibaculum rodentium 1 1702221 1647 82 0 3673 3 1 Erysipelothrix genus 1514105 0 1631 1 species Erysipelothrix larvae 1648 1960 0 species Erysipelothrix rhusiopathiae 1 84086 906 0 no rank 1 906 0 endosymbiont 'TC1' of Trimyema compressum species 1 243899 479 91061 1 class Bacilli 435 0 832411 377208 0 268 1 Bacillales order 1385 930 9 no rank 5990 0 539002 0 1372 no rank 2 539738 1 genus Gemella 2 0 1372 1 1378 1371 0 1 no rank 2624949 1785995 species Gemella sp. oral taxon 928 1 1371 0 7 no rank 0 4618 539742 4618 0 7 1 Exiguobacterium genus 33986 145 332410 0 953 1 Exiguobacterium sibiricum species 132920 0 842 1 Exiguobacterium antarcticum species 4 no rank 0 2678 2644629 1399115 0 632 1 Exiguobacterium sp. MH3 species species Exiguobacterium sp. AT1b 1 0 813 360911 0 661 1 Exiguobacterium sp. U13-1 species 1849031 1224749 0 572 Exiguobacterium sp. ZWU0009 species 1 24 186820 9 Listeriaceae family 1 0 8975 2755 6 0 967 1 genus Brochothrix 2 1 species Brochothrix thermosphacta 961 0 2756 69 1637 genus Listeria 1 6 7984 0 1643 Listeria welshimeri species 1 1038 0 1638 1691 0 Listeria ivanovii species 1 1639 1 Listeria monocytogenes species 3277 0 0 971 Listeria innocua species 1 1642 1640 1 species Listeria seeligeri 938 0 7 186824 4 Thermoactinomycetaceae family 1 2183 0 1 Laceyella genus 31 0 292635 1677050 120 2145 0 1 genus Novibacillus 2 1 species Novibacillus thermophilus 2025 0 1471761 186821 9 0 1530 Sporolactobacillaceae family 1 2 0 1521 no rank 1 663587 85683 [Bacillus] selenitireducens species 1 1521 0 0 10955 9 family Alicyclobacillaceae 1 186823 61 3 Tumebacillus genus 1 0 4887 43 432330 3067 0 Tumebacillus avium species 1 1903704 1214604 1777 0 1 Tumebacillus algifaecis species 0 2706 3 genus Kyrpidia 1 1129704 70 2055160 0 1320 species Kyrpidia sp. EA-1 1 33943 1316 0 1 Kyrpidia tusciae species 29330 37 0 3301 1 genus Alicyclobacillus 2 Alicyclobacillus acidocaldarius species 1 3264 0 405212 186818 108 23389 0 Planococcaceae family 1 26 37 1569 5 1 Sporosarcina genus 0 5861 1571 1 species Sporosarcina ureae 0 2608 0 2422 2 no rank 2647733 1278 0 Sporosarcina sp. P33 species 1 1930764 1930546 species Sporosarcina sp. P37 1 1144 0 1476 1 Sporosarcina psychrophila species 0 794 0 1053 2 1 Rummeliibacillus genus 648802 2 241244 0 1051 1 species Rummeliibacillus stabekisii 2050 0 genus Jeotgalibacillus 1 2 157226 5 1508404 species Jeotgalibacillus malaysiensis 1 2045 0 genus 1 0 1166 1649 2644826 no rank 1 0 1166 1166 0 species Kurthia sp. 11kri321 1 1750719 648800 10 2565 0 3 genus Solibacillus 1 2637870 no rank 1 0 967 species Solibacillus sp. R5-41 1 0 967 2048654 76853 0 1588 1 Solibacillus silvestris species 0 10586 Planococcus genus 1 12 1372 116 0 576 1 species Planococcus donghaensis 414778 1302659 0 458 1 Planococcus sp. L10.15 species 200991 Planococcus rifietoensis species 1 0 1078 1215089 Planococcus halocryophilus species 1 763 0 192421 Planococcus maritimus species 1 2295 0 1374 1 species Planococcus kocurii 647 0 2662419 2 no rank 0 1786 0 628 Planococcus sp. PAMC 21323 species 1 1526927 1158 0 1 species Planococcus sp. MB-3u-03 2058136 Planococcus faecalis species 1 0 829 1598147 1038856 1 species Planococcus plakortidis 0 1022 Planococcus antarcticus species 1 1016 0 161360 3105 90964 1 Staphylococcaceae family 42 41933 0 925 1279 33 Staphylococcus genus 1 0 33379 1281 0 706 1 Staphylococcus carnosus species 0 755 1 Staphylococcus succinus species 61015 283734 0 2353 species Staphylococcus pseudintermedius 1 1292 species Staphylococcus warneri 1 1085 0 1282 0 1537 species Staphylococcus epidermidis 1 1286 0 1047 1 Staphylococcus simulans species 0 985 species Staphylococcus condimenti 1 70255 29388 0 801 1 Staphylococcus capitis species 246432 950 0 species Staphylococcus equorum 1 1295 Staphylococcus schleiferi species 1 0 875 1290 865 0 1 Staphylococcus hominis species 533 0 species Staphylococcus muscae 1 1294 70258 species Staphylococcus piscifermentans 1 580 0 species Staphylococcus lutrae 1 598 0 155085 Staphylococcus saprophyticus species 1 885 0 29385 914 0 1 species Staphylococcus sciuri 1296 0 800 no rank 1 91994 1715860 Staphylococcus sp. AntiMn-1 species 1 0 800 1 species Staphylococcus hyicus 0 541 1284 1425 0 species Staphylococcus xylosus 1 1288 790 0 1 Staphylococcus argenteus species 985002 214473 791 0 species Staphylococcus nepalensis 1 species Staphylococcus kloosii 1 716 0 29384 species Staphylococcus haemolyticus 1 0 761 1283 727 0 Staphylococcus simiae species 1 308354 29382 814 0 species Staphylococcus cohnii 1 1 species Staphylococcus pettenkoferi 0 572 170573 species Staphylococcus lugdunensis 1 764 0 28035 1 species Staphylococcus felis 0 1003 46127 1 Staphylococcus stepanovicii species 898 0 643214 1280 3910 0 species Staphylococcus aureus 1 45972 1 Staphylococcus pasteuri species 1864 0 985762 Staphylococcus agnetis species 1 0 609 69965 63 3360 0 4 1 genus Macrococcus 69966 Macrococcus caseolyticus species 1 1569 0 866 0 1 species Macrococcus canis 1855823 0 862 1 no rank 2619255 1898474 0 862 species Macrococcus sp. IME1552 1 60 2005363 1 genus Auricoccucs 2 655 0 1849491 species Auricoccus indicus 1 595 0 59 45669 2 genus Salinicoccus 1 1434 0 407035 1 Salinicoccus halodurans species 0 1375 186822 371 0 121472 46 Paenibacillaceae family 1 44249 999 106296 0 36 Paenibacillus genus 1 189426 1 species Paenibacillus odorifer 0 2091 59893 Paenibacillus peoriae species 1 0 1431 169760 1 species Paenibacillus stellifer 0 4636 0 5785 Paenibacillus mucilaginosus species 1 61624 1462996 1 species Paenibacillus yonginensis 0 3265 1763538 1385 0 species Paenibacillus crassostreae 1 44251 4974 0 species Paenibacillus durus 1 159743 1 species Paenibacillus terrae 0 2156 0 2999 species Paenibacillus ihbetae 1 1870820 2582 0 1 species Paenibacillus sabinae 365617 0 1992 1 Paenibacillus kribbensis species 172713 414771 0 4270 species Paenibacillus donghaensis 1 2044880 0 3738 1 species group 483937 0 3738 species Paenibacillus riograndensis 1 1464 1 species Paenibacillus larvae 2061 0 185978 13 no rank 37116 0 0 3946 1 species Paenibacillus sp. FSL P4-0081 1536769 4002 0 1 Paenibacillus sp. FSL R7-0273 species 1536772 324057 0 2841 1 Paenibacillus sp. JDR-2 species Paenibacillus sp. FSL R5-0912 species 1 0 3892 1536771 1536773 0 4342 Paenibacillus sp. FSL R7-0331 species 1 1590 0 Paenibacillus sp. FSL R5-0345 species 1 1536770 2069255 species Paenibacillus sp. lzh-N1 1 1585 0 0 1713 Paenibacillus sp. FSL H7-0737 species 1 1536775 1536774 1 species Paenibacillus sp. FSL H7-0357 3532 0 2512 0 1 Paenibacillus sp. BIHB4019 species 1870819 481743 Paenibacillus sp. Y412MC10 species 1 0 3007 0 3120 1 species Paenibacillus sp. 32O-W 1695218 1566358 1034 0 1 species Paenibacillus sp. IHBB 10380 162209 0 1774 1 species Paenibacillus naphthalenovorans 1 species Paenibacillus swuensis 2176 0 1178515 0 2784 1 species Paenibacillus bovis 1616788 0 2762 1 species Paenibacillus beijingensis 1126833 1 Paenibacillus polymyxa species 5913 0 1406 0 3928 1 species Paenibacillus borealis 160799 3472 0 1 Paenibacillus graminis species 189425 528191 0 2007 Paenibacillus xylanexedens species 1 1 genus Thermobacillus 2 5437 0 15 76632 1 species Thermobacillus composti 0 5422 377615 70 55080 4 1 Brevibacillus genus 0 6181 54913 Brevibacillus formosus species 1 0 1380 1465 1 species Brevibacillus laterosporus 2344 0 1393 1 species Brevibacillus brevis 0 2387 85151 no rank 3 3187 0 3 Aneurinibacillus genus 1 0 3187 6 55079 0 1716 Aneurinibacillus soli species 1 1500254 2642329 no rank 1 0 1465 1 species Aneurinibacillus sp. XH2 1465 0 1450761 0 159851 1 family Bacillaceae 120 186817 591 2 genus 3029 0 2675229 1990 0 1 Bacillus simplex species 1478 264697 0 1039 1 Bacillus muralis species 11 1906945 2 1 genus Parageobacillus 0 1497 1 Parageobacillus thermoglucosidasius species 1486 0 1426 1386 5007 98552 0 1 Bacillus genus 58 species Bacillus aryabhattai 1 1107 0 412384 86664 species Bacillus flexus 1 0 1072 27402 0 species group 10 86661 580165 1215 0 1 Bacillus cytotoxicus species 0 947 1 Bacillus anthracis species 1392 0 3393 no rank 3 2750818 1839798 species Bacillus sp. FDAARGOS_235 1 0 1318 Bacillus sp. HBCD-sjtu species 1 1147 0 2053832 1892404 species Bacillus sp. ABP14 1 0 928 1396 0 8715 1 Bacillus cereus species 658666 Bacillus bombysepticus species 1 839 0 1405 0 3215 1 Bacillus mycoides species 155322 0 909 Bacillus toyonensis species 1 1428 8169 0 1 species Bacillus thuringiensis 1471 species Bacillus methanolicus 1 0 1228 230 0 1 species Bacillus gibsonii 79881 4650 0 1 species Bacillus pumilus 1408 1 species Bacillus cellulosilyticus 0 1035 1413 0 3010 1 Bacillus megaterium species 1404 135735 Bacillus endophyticus species 1 1730 0 653685 20101 0 species group 9 1884 0 species Bacillus licheniformis 1 1402 1 Bacillus sonorensis species 0 1575 119858 1452 Bacillus atrophaeus species 1 0 1714 1648923 1 species Bacillus paralicheniformis 0 1656 1 species Bacillus vallismortis 0 304 72361 0 6895 1 species Bacillus subtilis 1423 species subgroup 3 0 6073 1938374 2251 0 species Bacillus velezensis 1 492670 2937 0 species Bacillus amyloliquefaciens 1 1390 0 885 1 species Bacillus siamensis 659243 1398 Bacillus coagulans species 1 0 3220 Bacillus cohnii species 1 1048 0 33932 0 1085 1 species Bacillus xiamenensis 1178537 561879 species Bacillus safensis 1 0 2003 1547283 species Bacillus weihaiensis 1 1258 0 324767 1628 0 species Bacillus infantis 1 1479 1191 0 Bacillus smithii species 1 1 Bacillus glycinifermentans species 2195 0 1664069 species Bacillus horikoshii 1 0 1187 79883 species group 1 0 1249 1792192 1249 0 Bacillus altitudinis species 1 293387 632773 0 1115 1 species Bacillus beveridgei no rank 19 0 14801 185979 1446792 604 0 Bacillus sp. Pc3 species 1 756828 1 Bacillus sp. WP8 species 0 1056 1127744 species Bacillus sp. JS 1 0 474 0 362 1 species Bacillus sp. YP1 1574141 1827146 1 Bacillus sp. IHB B 7164 species 0 1210 0 1243 Bacillus sp. X1(2014) species 1 1565991 1628753 1 species Bacillus sp. LM 4-2 0 339 2026248 species Bacillus sp. 1s-1 1 0 1345 0 597 species Bacillus sp. 275 1 1941347 2049935 Bacillus sp. Lzh-5 species 1 153 0 2009331 Bacillus sp. MD-5 species 1 0 560 563169 621 0 species Bacillus sp. SJ-10 1 1837130 1 species Bacillus sp. FJAT-14266 999 0 98228 1000 0 1 species Bacillus sp. OxB-1 1345 0 species Bacillus sp. H15-1 1 1856406 0 377 species Bacillus sp. (in: Bacteria) 1 1409 887 0 1 Bacillus sp. SDLI1 species 1774743 1570330 0 232 Bacillus sp. BH072 species 1 666686 1397 0 Bacillus sp. 1NLA3E species 1 84406 82 0 6239 7 1 Virgibacillus genus 2620237 1964 0 no rank 2 species Virgibacillus sp. SK37 1 916 0 403957 1911587 0 1048 species Virgibacillus sp. 6R 1 1473 0 979 1 species Virgibacillus pantothenticus 1482 Virgibacillus halodenitrificans species 1 0 1189 0 1028 species Virgibacillus phasianinus 1 2017483 163877 0 997 1 species Virgibacillus necropolis 2675234 0 6508 5 genus 79885 1 species Bacillus pseudofirmus 0 1246 0 1124 1 Bacillus krulwichiae species 199441 86665 0 970 Bacillus halodurans species 1 species Bacillus clausii 1 0 1903 79880 species Bacillus lehensis 1 0 1265 300825 2 genus Salimicrobium 1 1097 0 2 351195 1095 0 species Salimicrobium jeotgali 1 1230341 29331 genus 1 0 1337 Amphibacillus xylanus species 1 1337 0 1449 0 2821 Fictibacillus genus 1 3 1329200 8 1221500 0 1141 species Fictibacillus phosphorivorans 1 255247 0 1672 species Fictibacillus arsenicus 1 175304 10 0 1144 2 1 genus Lentibacillus 1472767 1 Lentibacillus amyloliquefaciens species 0 1134 2 1 Terribacillus genus 0 1714 1 459532 586416 1 species Terribacillus aidingensis 0 1713 2279 0 3 1 genus Halobacillus 45667 3 1159 0 1 species Halobacillus mangrovi 402384 1117 0 species Halobacillus halophilus 1 1570 129337 1041 14011 0 Geobacillus genus 1 15 1422 0 1365 1 Geobacillus stearothermophilus species 129338 0 1202 1 species Geobacillus subterraneus 1043 0 1 species Geobacillus genomosp. 3 1921421 33940 1327 0 Geobacillus thermodenitrificans species 1 no rank 6 3949 0 2642459 0 598 1 species Geobacillus sp. C56-T3 691437 528 0 species Geobacillus sp. GHH01 1 1233873 550542 353 0 1 species Geobacillus sp. Y412MC52 1 Geobacillus sp. Y412MC61 species 386 0 544556 471223 Geobacillus sp. WCH70 species 1 903 0 0 1181 species Geobacillus sp. Y4.1MC1 1 581103 4 species group 4084 0 1505648 0 1082 Geobacillus lituanicus species 1 169283 33941 species Geobacillus thermoleovorans 1 1648 0 951 0 Geobacillus thermocatenulatus species 1 33938 1462 0 403 species Geobacillus kaustophilus 1 2965 0 genus 2 2675230 859143 1 species Bacillus kochii 1227 0 1738 0 1 Bacillus oceanisediminis species 665099 14 150247 genus Anoxybacillus 1 6 0 5559 198467 1081 0 1 Anoxybacillus gonensis species 2 no rank 1947 0 2639704 1490057 1 species Anoxybacillus sp. B7M1 0 910 1490052 species Anoxybacillus sp. B2M1 1 1037 0 1 species Anoxybacillus amylolyticus 0 946 294699 33934 1 Anoxybacillus flavithermus species 1571 0 400634 74 0 7229 5 1 genus Lysinibacillus Lysinibacillus varians species 1 0 1403 1145276 2636778 1 no rank 1273 0 2072025 1 Lysinibacillus sp. YS11 species 1273 0 1421 0 3201 1 Lysinibacillus sphaericus species 0 1278 1 Lysinibacillus fusiformis species 28031 12 182709 1 genus Oceanobacillus 2 2070 0 1 Oceanobacillus iheyensis species 2058 0 182710 1209 0 2 1 genus Aeribacillus 1055323 3 1206 0 1 Aeribacillus pallidus species 33936 454724 0 166 order Lactobacillales 1 186826 7306 144 81852 Enterococcaceae family 1 20 63810 0 0 59453 12 genus Enterococcus 1 1350 4150 37734 Enterococcus casseliflavus species 1 0 879 53346 1426 0 1 Enterococcus mundtii species 1354 species Enterococcus hirae 1 1351 0 species Enterococcus faecium 1 35286 0 1352 1351 9217 0 1 Enterococcus faecalis species 2005703 species Enterococcus wangshanyuanii 1 1471 0 0 963 1 Enterococcus thailandicus species 417368 2988 0 3 no rank 2608891 2057791 0 848 Enterococcus sp. CR-Ec1 species 1 1 Enterococcus sp. FDAARGOS_163 species 0 860 2060306 1280 0 species Enterococcus sp. FDAARGOS_375 1 2060307 1722 0 1 Enterococcus durans species 53345 8 51668 Tetragenococcus genus 1 2 1527 0 1 Tetragenococcus halophilus species 1519 0 51669 841 0 1 Melissococcus genus 2 33969 2 33970 species Melissococcus plutonius 1 839 0 3 1 Vagococcus genus 0 1845 5 2737 519472 1 Vagococcus teuberi species 0 927 0 913 species Vagococcus penaei 1 633807 58 family Lactobacillaceae 1 73383 0 604 33958 2767890 0 493 1 genus 493 0 1 species Lactobacillus hokkaidonensis 1193095 genus 2 0 851 2767881 53444 Lactobacillus lindneri species 1 435 0 1625 Lactobacillus sanfranciscensis species 1 416 0 2767887 genus 4 0 6573 1623 Lactobacillus ruminis species 1 0 2167 869 0 1 Lactobacillus acidipiscis species 89059 species Lactobacillus agilis 1 0 1214 1601 Lactobacillus salivarius species 1 0 2323 1624 0 30844 16 Lactobacillus genus 1 1578 2480 33959 Lactobacillus johnsonii species 1 0 5339 1600 0 571 1 Lactobacillus acetotolerans species 1 species Lactobacillus delbrueckii 3186 0 1584 1550 0 species Lactobacillus gasseri 1 1596 2620435 4 no rank 1719 0 1545702 0 382 1 species Lactobacillus sp. wkB8 2099789 0 417 Lactobacillus sp. CBA3606 species 1 2099788 385 0 Lactobacillus sp. CBA3605 species 1 2108362 1 Lactobacillus sp. D1501 species 535 0 267818 Lactobacillus kefiranofaciens species 1 0 593 0 1192 1 species Lactobacillus gallinarum 52242 109790 693 0 1 Lactobacillus jensenii species 0 10998 species Lactobacillus amylovorus 1 1604 737 0 1 Lactobacillus acidophilus species 1579 Lactobacillus amylolyticus species 1 0 455 83683 1 species Lactobacillus helveticus 1331 0 1587 0 5015 6 genus 2767879 886 0 1 species Lactobacillus ginsenosidimutans 1007676 species Lactobacillus allii 1 753 0 1847728 0 752 1 Lactobacillus crustorum species 392416 species Lactobacillus heilongjiangensis 1 779 0 1074467 species Lactobacillus alimentarius 1 890 0 1602 1612 1 species Lactobacillus farciminis 0 955 genus Pediococcus 1 6 0 4648 20 1253 51663 680 0 1 species Pediococcus damnosus species group 1 1953 0 1670797 Pediococcus acidilactici species 1 1953 0 1254 187452 633 0 species Pediococcus claussenii 1 617 0 species Pediococcus inopinatus 1 114090 745 0 1 Pediococcus pentosaceus species 1255 2742598 genus 3 4086 0 1 species Lactobacillus mucosae 1604 0 97478 1613 1 species Lactobacillus fermentum 0 947 1598 1 species Lactobacillus reuteri 1535 0 2767842 2667 0 genus 3 1506 0 species Lactobacillus plantarum 1 1590 717 0 Lactobacillus pentosus species 1 1589 0 444 species Lactobacillus paraplantarum 1 60520 3679 0 genus 1 2767876 1603 Lactobacillus amylophilus species 1 0 3679 2 genus 0 1551 2767889 0 639 Lactobacillus backii species 1 375175 1610 912 0 1 species Lactobacillus coryniformis 3 genus 4641 0 2759736 1597 0 1439 Lactobacillus paracasei species 1 0 1178 1 Lactobacillus rhamnosus species 47715 1582 2024 0 1 Lactobacillus casei species 2767885 2150 0 genus 2 28038 0 809 1 Lactobacillus curvatus species 1599 Lactobacillus sakei species 1 1341 0 2767892 genus 1 0 1140 1 Lactobacillus paracollinoides species 0 1140 240427 2767893 genus 3 1906 0 1581 732 0 1 species Lactobacillus buchneri 152331 471 0 1 species Lactobacillus parabuchneri 703 0 1 Lactobacillus curieae species 1138822 0 2043 3 genus 2767886 267363 0 602 1 Lactobacillus zymae species 1580 1 Lactobacillus brevis species 0 868 0 573 Lactobacillus koreensis species 1 637971 0 492 genus 1 2767877 148814 1 Lactobacillus kunkeei species 0 492 no rank 1 758 0 263855 species Lactobacillales bacterium 1 0 758 1993866 11 1 family Carnobacteriaceae 6910 0 21 186828 1 191769 2 1 Marinilactibacillus genus 1211 0 1210 0 1 no rank 2632303 1911586 1 species Marinilactibacillus sp. 15R 0 1210 3980 0 5 1 genus Carnobacterium 2747 18 2 no rank 0 1892 257487 208596 1 species Carnobacterium sp. 17-4 999 0 0 893 1 species Carnobacterium sp. CP1 1564681 2751 0 1066 1 species Carnobacterium maltaromaticum Carnobacterium inhibens species 1 1004 0 147709 1698 0 Jeotgalibaca genus 1 3 1470540 16 0 557 1 Jeotgalibaca dankookensis species 708126 1 no rank 1125 0 2621505 1903686 1 Jeotgalibaca sp. PTS2502 species 0 1125 186827 8 0 6238 1 family Aerococcaceae 8 1 genus Aerococcus 7 0 6230 188 1375 0 916 1 species Aerococcus urinae 1376 0 840 species Aerococcus urinaeequi 1 51665 1 species Aerococcus urinaehominis 837 0 128944 87541 1 species Aerococcus christensenii 1409 0 1377 1 species Aerococcus viridans 0 728 0 1312 1 Aerococcus sanguinicola species 119206 49 Streptococcaceae family 1 288660 0 4267 1300 30 1357 1 Lactococcus genus 5 0 7225 species Lactococcus raffinolactis 1 0 613 1366 1363 0 1345 species Lactococcus garvieae 1 species Lactococcus piscium 1 745 0 1364 1358 species Lactococcus lactis 1 4492 0 43 1 genus Streptococcus 0 277168 9163 1301 Streptococcus agalactiae species 1 16430 0 1311 45634 species Streptococcus cristatus 1 1200 0 1 Streptococcus iniae species 1819 0 1346 7 no rank 0 37872 2608887 712633 1 species Streptococcus sp. oral taxon 431 0 1279 1 species Streptococcus sp. A12 0 2271 1759399 1902136 Streptococcus sp. NPS 308 species 1 0 815 5457 0 1 Streptococcus sp. I-G2 species 1156431 species Streptococcus sp. 'group B' 1 0 793 1319 Streptococcus sp. FDAARGOS_192 species 1 0 21246 1839799 6011 0 1 species Streptococcus sp. I-P16 1156433 0 732 1 Streptococcus halotolerans species 1814128 28037 0 5202 species Streptococcus mitis 1 1 species Streptococcus equinus 0 9785 1335 1302 0 2967 species Streptococcus gordonii 1 6910 0 1 species Streptococcus infantarius 102684 species Streptococcus pluranimalium 1 0 602 82348 0 9428 1 species Streptococcus pasteurianus 197614 400065 0 830 1 species Streptococcus merionis 0 1232 Streptococcus pseudopneumoniae species 1 257758 0 5236 1 species Streptococcus thermophilus 1308 1349 1 Streptococcus uberis species 703 0 24167 0 Streptococcus suis species 1 1307 0 3241 1 species Streptococcus pneumoniae 1313 0 3593 1 species Streptococcus pyogenes 1314 1 species Streptococcus mutans 1262 0 1309 1 species Streptococcus parauberis 0 1031 1348 6510 0 Streptococcus lutetiensis species 1 150055 Streptococcus himalayensis species 1 671 0 1888195 1 species Streptococcus macedonicus 726 0 59310 species Streptococcus pantholopis 1 1393 0 1811193 315405 Streptococcus gallolyticus species 1 0 2264 1318 Streptococcus parasanguinis species 1 4795 0 1304 Streptococcus salivarius species 1 51826 0 1305 0 1611 1 species Streptococcus sanguinis 3866 0 1 Streptococcus acidominimus species 1326 species group 2 3038 0 119603 1336 species Streptococcus equi 1 2221 0 1334 1 species Streptococcus dysgalactiae 0 817 671232 0 53285 3 species group 1328 Streptococcus anginosus species 1 0 35394 species Streptococcus intermedius 1 1951 0 1338 15940 0 1 species Streptococcus constellatus 76860 1 species Streptococcus oralis 0 2862 1303 1825069 0 916 1 species Streptococcus marmotae 81850 12 7659 0 18 family Leuconostocaceae 1 2 1 genus Oenococcus 0 494 1 46254 1247 493 0 species Oenococcus oeni 1 6 1 genus Weissella 0 2709 16 46255 1 Weissella koreensis species 661 0 165096 382 0 species Weissella ceti 1 759620 1249 1 species Weissella paramesenteroides 476 0 1631871 562 0 Weissella jogaejeotgali species 1 612 0 1 Weissella cibaria species 137591 4444 0 1 genus Leuconostoc 9 1243 32 2685106 no rank 1 0 425 Leuconostoc sp. C2 species 1 425 0 979982 0 532 species Leuconostoc carnosum 1 1252 1 species Leuconostoc kimchii 0 427 136609 1 species Leuconostoc gelidum 0 711 1244 255248 Leuconostoc garlicum species 1 325 0 383 0 Leuconostoc lactis species 1 1246 0 423 Leuconostoc citreum species 1 33964 1186 0 Leuconostoc mesenteroides species 1 1245 0 3567 no rank 2 33974 genus Ndongobacter 1 2 3567 0 24 1930845 species Ndongobacter massiliensis 1 0 3543 1871025 517 186801 1 Clostridia class 226 0 10383341 5510 0 order Halanaerobiales 1 12 53433 1 family Halanaerobiaceae 1 6 3342 0 3 972 40 2330 3 Halanaerobium genus 1 0 2317 species Halanaerobium hydrogeniformans 1 0 1216 656519 Halanaerobium praevalens species 1 0 1061 2331 5 32636 1 Halothermothrix genus 2 0 1022 31909 0 1017 1 Halothermothrix orenii species family Halobacteroidaceae 1 5 0 2167 5 53434 0 677 Halobacteroides genus 1 2 42417 11 species Halobacteroides halobius 1 666 0 42422 28186 6 0 1485 genus Acetohalobium 1 2 1 Acetohalobium arabaticum species 0 1479 28187 2770089 order 4 2811 0 0 1491 family 2 2770092 2 genus Tepidanaerobacter 1 0 1491 1 499228 499229 0 1490 1 species Tepidanaerobacter acetatoxydans 2770093 0 1320 family 2 0 1320 2 genus Thermosediminibacter 1 291988 19 291990 Thermosediminibacter oceani species 1 1301 0 4 485256 4 1 order Natranaerobiales 1011 0 3 Natranaerobiaceae family 1 1007 0 1 485255 genus Natranaerobius 1 2 1006 0 43 375928 375929 963 0 species Natranaerobius thermophilus 1 22347 186802 Clostridiales order 1 167 0 10338777 4611 0 Heliobacteriaceae family 1 3 31984 34 2697 94 4577 0 2 Heliobacterium genus 1 35701 0 4483 1 Heliobacterium modesticaldum species 186807 136 46097 0 1 family Peptococcaceae 29 1 278993 2 Thermincola genus 1 1550 0 1 species Thermincola potens 1549 0 863643 5 1 Desulfitobacterium genus 0 9039 73 36853 233055 Desulfitobacterium dichloroeliminans species 1 0 1853 49338 0 3301 Desulfitobacterium hafniense species 1 0 2150 species Desulfitobacterium dehalogenans 1 36854 1 species Desulfitobacterium metallireducens 0 1662 142877 51514 1 0 4207 genus Dehalobacterium 1 2 0 4206 1 species Dehalobacterium formicoaceticum 51515 8212 0 1 genus Desulfotomaculum 5 1562 147 59610 0 1545 1 Desulfotomaculum reducens species 1565 species Desulfotomaculum nigrificans 1 0 1552 1564 1 Desulfotomaculum ruminis species 0 3211 1833852 1 Desulfotomaculum ferrireducens species 1757 0 8924 0 4 1 Dehalobacter genus 56112 64 2635733 5998 0 no rank 2 1131462 1 species Dehalobacter sp. CF 3114 0 1147129 1 Dehalobacter sp. DCA species 2884 0 55583 2862 0 1 Dehalobacter restrictus species 5567 0 4 Desulfosporosinus genus 1 79206 93 79209 2002 0 1 species Desulfosporosinus meridiei 1777 0 Desulfosporosinus acidiphilus species 1 885581 1563 Desulfosporosinus orientis species 1 1695 0 2282740 2277 0 1 genus Desulfotomaculum gibsoniae species 1 2277 0 102134 2 genus Candidatus Desulforudis 1 0 2031 31 471826 1 Candidatus Desulforudis audaxviator species 0 2000 471827 genus Syntrophobotulus 1 2 0 2489 2 51196 51197 1 Syntrophobotulus glycolicus species 0 2487 1665 0 genus 1 2282742 58138 1665 0 species Desulfotomaculum acetoxidans 1 12 family 77067 0 2304686 2304692 0 11093 3 genus 288965 [Clostridium] clariflavum species 1 0 4123 3063 0 Herbivorax saccincola species 1 1677857 0 3907 Ruminiclostridium thermocellum species 1 1515 21 236752 2 1 Fastidiosipila genus 0 2013 0 1992 1 species Fastidiosipila sanguinis 236753 736 1508657 2 1 genus Ruminiclostridium 0 5878 1521 5142 0 [Clostridium] cellulolyticum species 1 0 5174 1 genus Mageeibacillus 2 1637257 2 Mageeibacillus indolicus species 1 0 5172 884684 2304691 0 3711 genus 1 1510 0 3711 species [Clostridium] stercorarium 1 2304693 genus 1 4939 0 0 4939 1 [Clostridium] thermosuccinogenes species 84032 no rank 1 0 44259 2305130 1834198 44259 0 Ruminiclostridium sp. KB18 species 1 543349 19 0 5543 Symbiobacteriaceae family 1 3 2733 50 0 5524 2 genus Symbiobacterium 1 2734 1 Symbiobacterium thermophilum species 0 5474 538999 0 254087 no rank 10 2717089 genus 1 123254 0 0 123254 1 Mordavella sp. Marseille-P3756 species 2086584 2 Intestinimonas genus 1 119330 0 969 1392389 1297617 Intestinimonas butyriciproducens species 1 118361 0 38 543314 1 family Clostridiales Family XIII. Incertae Sedis 4 8050 0 3464 0 1 Mogibacterium genus 2 86331 25 114527 3439 0 Mogibacterium diversum species 1 species [Eubacterium] sulci 1 4548 0 143393 9 539000 3 Clostridiales Family XVII. Incertae Sedis family 1 0 3453 genus Thermaerobacter 1 2 0 3444 32 73918 73919 0 3412 1 Thermaerobacter marianensis species 1038 31979 41 family Clostridiaceae 1 0 175661 75 49082 4 Candidatus Arthromitus genus 1 0 4232 no rank 3 0 4157 2638829 49118 species Candidatus Arthromitus sp. SFB-mouse 1 0 1369 0 1475 Candidatus Arthromitus sp. SFB-rat-Yit species 1 1041504 1508644 1313 0 species Candidatus Arthromitus sp. SFB-mouse-NL 1 390805 43 4515 0 2 genus Geosporobacter 1 Geosporobacter ferrireducens species 1 4472 0 1424294 0 4473 1 genus Alkaliphilus 3 114627 27 461876 2184 0 1 species Alkaliphilus oremlandii 1 Alkaliphilus metalliredigens species 2262 0 208226 1 Mordavella genus 370 0 1981033 30 Clostridium genus 1 0 161033 1414 1485 1216932 3627 0 Clostridium bornimense species 1 Clostridium beijerinckii species 1 0 6647 1520 1494 1 Clostridium cochlearium species 2855 0 1502 1 species Clostridium perfringens 0 7757 1519 1 Clostridium tyrobutyricum species 0 2509 0 4160 1 species Clostridium tetani 1513 1488 1 Clostridium acetobutylicum species 0 2576 species Clostridium autoethanogenum 1 2507 0 84023 3165 0 1 species Clostridium carboxidivorans 217159 1548 1 Clostridium scatologenes species 3688 0 0 5428 1 Clostridium pasteurianum species 1501 1 Clostridium formicaceticum species 2861 0 1497 Clostridium botulinum species 1 0 15003 1491 Clostridium saccharoperbutylacetonicum species 1 0 4977 36745 46867 species Clostridium chauvoei 1 0 4011 2347 0 1 species Clostridium ljungdahlii 1538 2614128 0 44802 2 no rank species Clostridium sp. SY8519 1 0 39217 1042156 0 5585 Clostridium sp. BNL1100 species 1 755731 1493 4626 0 1 Clostridium cellulovorans species 394958 0 2805 Clostridium taeniosporum species 1 1 species Clostridium butyricum 6654 0 1492 1534 4892 0 species Clostridium kluyveri 1 2269 0 species Clostridium aceticum 1 84022 29341 0 2855 Clostridium argentinense species 1 1509 0 2165 1 Clostridium sporogenes species 1 species Clostridium estertheticum 2541 0 238834 1542 1 species Clostridium novyi 2241 0 0 4568 species Clostridium saccharobutylicum 1 169679 1561 5083 0 species Clostridium baratii 1 186803 5180 3666394 0 27 1 family Lachnospiraceae 994 1506553 4 Lachnoclostridium genus 1 0 188581 1 no rank 0 73222 2608895 1 species Lachnoclostridium sp. YL32 73222 0 1834196 66219 17786 0 1 Lachnoclostridium phytofermentans species 1871021 1 species Lachnoclostridium phocaeense 96579 0 830 61 0 39731 3 Butyrivibrio genus 1 species Butyrivibrio hungatei 1 19663 0 185008 species Butyrivibrio proteoclasticus 1 0 20007 43305 1 genus 296711 0 2569097 1 species [Eubacterium] hallii 296711 0 39488 no rank 2 525794 0 186928 712991 1 Lachnospiraceae bacterium oral taxon 500 species 37401 0 39491 species [Eubacterium] rectale 1 488393 0 28050 1015960 0 genus 1 39485 1 species [Eubacterium] eligens 1015960 0 22 2039240 1 genus Anaerotignum 2 7384 0 28446 0 7362 species Anaerotignum propionicum 1 5 698776 2 1 genus Cellulosilyticum 7125 0 1 species Cellulosilyticum lentocellum 7120 0 29360 0 11646 1 Herbinix genus 2 1663717 30 0 11616 Herbinix luporum species 1 1679721 572511 190 183059 0 3 1 genus Blautia 1322 0 119526 1 species Blautia hansenii 2648079 63343 0 no rank 1 1796616 63343 0 1 species Blautia sp. YL58 53718 0 1 genus 2719231 84030 0 53718 1 [Clostridium] saccharolyticum species 0 384525 2 1 genus Anaerostipes 207244 444 species Anaerostipes hadrus 1 384081 0 649756 116 841 2 genus Roseburia 1 0 717316 species Roseburia hominis 1 0 717200 301301 0 229664 1 genus 2719313 208479 species [Clostridium] bolteae 1 0 229664 30 990719 Christensenellaceae family 1 3 0 52275 813 990721 Christensenella genus 1 2 0 52245 1 species Christensenella massiliensis 51432 0 1805714 902 541000 13 Ruminococcaceae family 1 5754013 0 2 genus Faecalibacterium 1 4944693 0 3529 216851 853 0 4941164 species Faecalibacterium prausnitzii 1 1263 255 610959 0 1 Ruminococcus genus 3 species Ruminococcus albus 1 0 21455 1264 1160721 0 589249 1 species Ruminococcus bicirculans 1 genus Herbivorax 0 10 1890281 946234 196 146811 0 2 1 genus Flavonifractor 0 146615 Flavonifractor plautii species 1 292800 0 9464 no rank 1 552397 29343 species [Clostridium] cellulosi 1 0 9464 22236 0 Ethanoligenens genus 1 2 253238 28 253239 1 species Ethanoligenens harbinense 22208 0 no rank 1 0 18938 2305133 1 Ruminococcaceae bacterium CPB6 species 0 18938 1572656 0 42916 family Oscillospiraceae 1 3 216572 11 459786 110 42905 0 2 1 Oscillibacter genus 351091 42795 0 1 species Oscillibacter valericigenes 0 206732 family Peptostreptococcaceae 1 12 186804 1025 1 no rank 0 2166 1411023 2081703 Peptostreptococcaceae bacterium oral taxon 929 species 1 0 2166 1870884 662 0 192294 1 genus Clostridioides 2 1 species Clostridioides difficile 191632 0 1496 2981 0 1 Peptoclostridium genus 2 1481960 17 1731 0 2964 1 species Peptoclostridium acidaminophilum 186831 3 2315 0 1 Acetoanaerobium genus 2 1511 1 species Acetoanaerobium sticklandii 0 2312 genus Paeniclostridium 1 2 2594 0 2 1849828 1505 species Paeniclostridium sordellii 1 0 2592 2 Filifactor genus 1 0 3357 7 44259 0 3350 species Filifactor alocis 1 143361 37 186806 1 family Eubacteriaceae 5 0 29233 15 33951 Acetobacterium genus 1 2 0 2213 1 Acetobacterium woodii species 0 2198 33952 0 26983 2 1 genus Eubacterium 1730 1386 1736 1 Eubacterium limosum species 0 25597 1801 0 5 1 Syntrophomonadaceae family 68298 1 1 862 2 Syntrophomonas genus 1 0 1138 species Syntrophomonas wolfei 1 0 1137 863 0 662 Syntrophothermus genus 1 2 129001 10 86170 species Syntrophothermus lipocalidus 1 652 0 1 Thermoanaerobacterales order 38 0 34715 71 68295 543371 45 0 16181 1 Thermoanaerobacterales Family III. Incertae Sedis family 13 10786 0 9 1 genus Caldicellulosiruptor 44000 244 413889 1 species Caldicellulosiruptor kronotskyensis 1324 0 55205 972 0 1 Caldicellulosiruptor owensensis species 44001 1 species Caldicellulosiruptor saccharolyticus 1584 0 717609 1128 0 Caldicellulosiruptor obsidiansis species 1 31899 1 Caldicellulosiruptor bescii species 1370 0 413888 0 1326 Caldicellulosiruptor hydrothermalis species 1 52766 1377 0 species Caldicellulosiruptor lactoaceticus 1 52765 species Caldicellulosiruptor kristjanssonii 1 0 1461 0 5350 3 1 genus Thermoanaerobacterium 28895 15 3255 0 1 Thermoanaerobacterium thermosaccharolyticum species 1517 0 2080 1 species Thermoanaerobacterium xylanolyticum 29329 0 1682 Thermoanaerobacterales Family IV. Incertae Sedis family 1 3 543372 17 252965 17 1665 0 2 1 genus Mahella 252966 Mahella australiensis species 1 1648 0 227387 0 372 family 1 227388 genus 1 0 372 372 0 1 Thermodesulfobium narugense species 184064 69 186814 20 1 Thermoanaerobacteraceae family 16409 0 249529 8 1345 0 1 Caldanaerobacter genus 2 species Caldanaerobacter subterraneus 1 1337 0 911092 4 no rank 0 3502 42857 18 42837 2 1 Ammonifex genus 1251 0 1 species Ammonifex degensii 0 1233 42838 8 44260 genus Moorella 1 2 0 2251 species Moorella thermoacetica 1 2243 0 1525 0 8905 9 1 genus Thermoanaerobacter 1754 451 29323 1090 0 1 Thermoanaerobacter brockii species 496866 1090 0 1 Thermoanaerobacter pseudethanolicus species 1 Thermoanaerobacter mathranii species 0 814 583357 0 1234 1 species Thermoanaerobacter kivui 2325 2 no rank 0 2294 2636821 573062 1201 0 Thermoanaerobacter sp. X513 species 1 1 Thermoanaerobacter sp. X514 species 0 1093 399726 951 0 1 species Thermoanaerobacter italicus 108150 46354 1 species Thermoanaerobacter wiegelii 981 0 1 genus Carboxydothermus 2 0 1292 1 129957 1291 0 1 Carboxydothermus hydrogenoformans species 129958 140458 18 1296 0 2 1 genus Thermacetogenium 0 1278 species Thermacetogenium phaeum 1 85874 18 1737404 1 Tissierellia class 19 24880 0 1224 0 no rank 2 1737407 1 genus Ezakiella 2 1224 0 21 1582879 1203 0 1 Ezakiella massiliensis species 1852374 767 1737405 16 order Tissierellales 1 0 23638 Peptoniphilaceae family 1 12 0 21132 4553 1570339 8 162289 1 genus Peptoniphilus 2 0 1884 2637196 1876 0 no rank 1 1912856 1 Peptoniphilus sp. ING2-D1G species 1876 0 genus Murdochiella 1 2 7241 0 11 1161127 1852373 1 species Murdochiella vaginalis 0 7230 150022 8 0 2238 2 1 Finegoldia genus 1260 2230 0 Finegoldia magna species 1 543311 40 0 2141 genus Parvimonas 1 2 33033 0 2101 1 species Parvimonas micra 3 165779 3 1 Anaerococcus genus 3075 0 1870984 0 1404 1 species Anaerococcus mediterraneensis 33034 1668 0 species Anaerococcus prevotii 1 2042895 3 0 1739 1 family Gottschalkiaceae 3 1505664 8 0 1736 1 genus Gottschalkia 2 1 Gottschalkia acidurici species 1728 0 1556 phylum 4 1299 0 67819 0 1299 4 Fimbriimonadia class 1 1663419 4 1663425 3 order 1295 0 0 1295 3 1 family Fimbriimonadaceae 1663426 8 1005038 8 1287 0 1 Fimbriimonas genus 2 Fimbriimonas ginsengisoli species 1 0 1279 1005039 no rank 2 0 523 1859062 0 523 2 1 Thermobaculum genus 262406 26 Thermobaculum terrenum species 1 497 0 166501 1297 0 44014 36 phylum Deinococci class 1 36 44014 0 235 188787 14102 0 order Thermales 1 17 68933 261 16 1 family Thermaceae 13841 0 99 188786 826 0 Marinithermus genus 1 2 186191 12 0 814 1 species Marinithermus hydrothermalis 186192 8 1 genus Thermus 8068 0 250 270 2619321 0 1048 1 no rank 1111069 species Thermus sp. CCB_US3_UF1 1 0 1048 274 2345 0 1 species Thermus thermophilus 56956 547 0 1 species Thermus brockianus 0 871 Thermus parvatiensis species 1 456163 766 0 Thermus scotoductus species 1 37636 56957 1012 0 species Thermus oshimai 1 271 Thermus aquaticus species 1 1229 0 208447 29 0 2259 1 genus Oceanithermus 2 187137 1 species Oceanithermus profundus 2230 0 15 65551 3 1 Meiothermus genus 2589 0 52022 1 Meiothermus silvanus species 0 1132 277 1 species Meiothermus ruber 1442 0 0 28102 15 1 Deinococcales order 118964 364 183710 146 0 27738 1 family Deinococcaceae 14 1 genus Deinococcus 13 0 27592 406 1298 3297 0 Deinococcus swuensis species 1 1182571 1299 1 species Deinococcus radiodurans 2402 0 1182568 0 1515 1 Deinococcus puniceus species 2623546 1 no rank 2171 0 2080419 species Deinococcus sp. NW-56 1 2171 0 0 3266 species Deinococcus gobiensis 1 502394 1803 0 1 species Deinococcus maricopensis 309887 1 Deinococcus peraridilitoris species 1593 0 432329 2723 0 species Deinococcus soli Cha et al. 2016 1 1309411 1 Deinococcus proteolyticus species 2652 0 55148 1768108 1 species Deinococcus actinosclerus 0 2646 310783 1639 0 Deinococcus deserti species 1 1479 0 1 Deinococcus geothermalis species 68909 2762275 order 3 0 1575 332247 19 0 1575 1 Trueperaceae family 3 18 332248 Truepera genus 1 2 0 1556 0 1538 1 Truepera radiovictrix species 332249 200938 2161 0 phylum 5 0 2161 5 Chrysiogenetes class 1 118001 12 189769 38 0 2149 4 order Chrysiogenales 1 2111 0 family Chrysiogenaceae 1 3 189770 12 14 393029 2 genus Desulfurispirillum 1 2099 0 2085 0 Desulfurispirillum indicum species 1 936456 200940 0 1345 phylum 7 1345 0 7 1 class Thermodesulfobacteria 67799 4 0 1341 6 Thermodesulfobacteriales order 1 188710 2 188711 2 1339 0 family Thermodesulfobacteriaceae 1 5 714 0 2 genus 1740 1 species Thermodesulfobacterium commune 0 269 1741 0 445 Thermodesulfobacterium geofontis species 1 1295609 1 genus 0 393 241192 0 393 species Thermodesulfatator indicus 1 171695 genus 1 230 0 444090 1653476 1 Caldimicrobium thiodismutans species 230 0 phylum 5 0 1421 1930617 5 Calditrichae class 1 0 1421 15 1962850 1406 0 4 1 Calditrichales order 1962852 28 2 1962854 1 Calditrichaceae family 3 0 1378 2 Caldithrix genus 1 0 1376 4 187144 187145 1 species Caldithrix abyssi 0 1372 200918 43 phylum 13330 0 188708 11 0 13330 1 class Thermotogae 43 2419 5 9174 0 Thermotogales order 1 28 23 188709 17 Thermotogaceae family 1 5957 0 1656 0 5 1 Pseudothermotoga genus 1643951 84 57487 0 443 1 species Pseudothermotoga hypogea 389 0 1 Pseudothermotoga lettingae species 177758 0 380 species Pseudothermotoga elfii 1 38322 1 Pseudothermotoga thermarum species 0 360 119394 4278 0 11 Thermotoga genus 1 2335 133 species Thermotoga petrophila 1 0 313 93929 93930 0 350 1 Thermotoga naphthophila species 2337 species Thermotoga neapolitana 1 590 0 0 479 species Thermotoga profunda 1 1508420 1508419 532 0 species Thermotoga caldifontis 1 2631113 1510 0 4 no rank 1157948 1 Thermotoga sp. 2812B species 301 0 126738 Thermotoga sp. RQ7 species 1 540 0 species Thermotoga sp. Cell2 1 309 0 1157947 126740 360 0 1 species Thermotoga sp. RQ2 1 Thermotoga maritima species 0 371 2336 10 Fervidobacteriaceae family 1 3212 0 10 1643950 4 1 genus Fervidobacterium 0 1143 11 2422 1 Fervidobacterium nodosum species 0 406 2424 2423 269 0 1 Fervidobacterium islandicum species 93466 457 0 species Fervidobacterium pennivorans 1 0 2059 1 genus Thermosipho 5 2420 3 46541 1 Thermosipho melanesiensis species 0 459 2676525 0 888 2 no rank 1437364 0 438 species Thermosipho sp. 1070 1 0 450 Thermosipho sp. 1063 species 1 1462747 1 species Thermosipho africanus 709 0 2421 1643946 1 1078 0 6 Kosmotogales order 1 15 1643948 5 1 Kosmotogaceae family 1077 0 2 genus 675 0 651456 1330330 1 Kosmotoga pacifica species 404 0 Kosmotoga olearia species 1 0 271 651457 387 0 Mesotoga genus 1 2 1184396 7 1184387 380 0 species Mesotoga prima 1 16 1643947 8 1 order Petrotogales 0 3067 0 3051 family 7 1643949 1 genus Defluviitoga 2 591 0 10 1511648 1006576 581 0 1 species Defluviitoga tunisiensis 1 genus Marinitoga 3 0 2027 12 160798 950 0 1 species Marinitoga piezophila 149715 2640159 no rank 1 1065 0 1065 0 1 Marinitoga sp. 1137 species 1545835 2 1 Petrotoga genus 0 433 10 28236 species Petrotoga mobilis 1 423 0 69499 0 65522 phylum 59 203691 0 65522 1 Spirochaetia class 59 203692 168 order 9 0 4375 1643688 170 15 4375 0 family Leptospiraceae 1 9 35 171 6 1 Leptospira genus 3341 0 0 326 1 Leptospira biflexa species 172 28452 674 0 Leptospira alstonii species 1 174 1 species Leptospira borgpetersenii 0 635 173 0 1159 1 Leptospira interrogans species species Leptospira santarosai 1 512 0 28183 2 1 Turneriella genus 0 1019 3 338321 1016 0 1 species Turneriella parva 29510 0 7183 Brachyspirales order 1 7 1643686 32 7151 0 1 family Brachyspiraceae 6 143786 27 29521 37 7124 0 5 genus Brachyspira 1 159 1 Brachyspira hyodysenteriae species 0 1454 species Brachyspira intermedia 1 0 1401 84377 84378 1262 0 1 species Brachyspira murdochii 52584 0 2970 1 Brachyspira pilosicoli species 1661 136 1 Spirochaetales order 42 53796 0 0 3517 17 Borreliaceae family 1 1643685 9 genus Borreliella 1 8 0 1626 109 64895 139 0 214 species Borreliella burgdorferi 1 0 194 Borreliella afzelii species 1 29518 1674146 1 Borrelia mayonii species 149 0 29519 species Borreliella garinii 1 387 0 64897 1 Borreliella bissettii species 0 231 188 0 1 Borreliella bavariensis species 664662 1 Borreliella valaisiana species 0 154 62088 1 Borrelia genus 8 0 1882 42 138 47466 411 0 1 Borrelia miyamotoi species 0 296 1 Borrelia parkeri species 141 143 0 193 species Borrelia anserina 1 0 243 Borrelia hermsii species 1 140 0 291 1 Borrelia turicatae species 142 195 0 Borrelia recurrentis species 1 44449 40834 211 0 species Borrelia duttonii 1 0 48618 24 Spirochaetaceae family 1 137 721 10 399320 4 genus Sphaerochaeta 1 0 4245 0 1115 1 species Sphaerochaeta pleomorpha 1131707 273376 species Sphaerochaeta coccoides 1 0 1115 1131703 1 Sphaerochaeta globosa species 2005 0 37304 0 12 Treponema genus 1 157 2554 409322 Treponema pedis species 1 0 785 3875 0 species Treponema putidum 1 221027 158 Treponema denticola species 1 2365 0 167 16326 0 1 Treponema succinifaciens species 1 Treponema brennaborense species 2701 0 81028 1978 0 1 species Treponema azotonutricium 150829 215591 1161 0 species Treponema caldarium 1 53435 1 Treponema paraluiscuniculi species 164 0 0 3596 1 no rank 2638727 1539298 1 species Treponema sp. OMZ 838 0 3596 199 0 species Treponema pallidum 1 160 88058 1 species Treponema primitia 1600 0 1640 0 2 genus Sediminispirochaeta 1 1911556 1 0 1639 Sediminispirochaeta smaragdinae species 1 55206 0 1300 genus Salinispira 1 2 1616789 3 1 Salinispira pacifica species 1297 0 1307761 0 3408 genus Spirochaeta 1 3 146 30 0 2000 species Spirochaeta thermophila 1 154 0 1378 species Spirochaeta africana 1 46355 0 692 no rank 2 2323 2 clade 692 0 1783234 1 clade 0 370 95901 2497643 370 0 1 class 2497644 0 370 order 1 2497645 0 370 family 1 1551504 1 genus 370 0 673862 1 species Candidatus Babela massiliensis 0 370 95818 phylum 1 322 0 1 no rank 322 0 1895827 0 322 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 2056494 1 74152 phylum Elusimicrobia 1 8 2233 0 99260 0 486 1 no rank 167965 1 uncultured Termite group 1 bacterium species 0 486 447830 class 4 1373 0 order 4 0 1373 1783344 1783343 3 0 1373 4 family Endomicrobiaceae 1 1408194 5 1370 0 3 Endomicrobium genus 1 1408281 859 0 1 Endomicrobium proavitum species 0 506 1 Candidatus Endomicrobium trichonymphae species 1408204 641853 2 class 0 373 0 373 1 order Elusimicrobiales 2 641854 1 1 family 0 372 641876 423604 1 genus 372 0 0 372 Elusimicrobium minutum species 1 423605 200783 23 phylum 4889 0 0 4889 1 Aquificae class 23 187857 15 1485951 5 0 960 4 1 order Desulfurobacteriales 558314 5 955 0 3 family Desulfurobacteriaceae 1 171868 0 398 1 genus Thermovibrio ammonificans species 1 0 398 228745 genus 1 552 0 64159 64160 552 0 1 species Desulfurobacterium thermolithotrophum 2 32069 1 order Aquificales 18 0 3914 6 224027 1 Hydrogenothermaceae family 6 1513 0 182899 2 519 0 2 1 Persephonella genus 517 0 species Persephonella marina 1 309805 3 1 genus Sulfurihydrogenibium 0 988 3 212790 species Sulfurihydrogenibium azorense 1 362 0 309806 2619248 no rank 1 623 0 436114 0 623 Sulfurihydrogenibium sp. YO3AOP1 species 1 family 10 1929 0 64898 75905 0 312 genus 2 75906 1 species Thermocrinis ruber 141 0 1 Thermocrinis albus species 0 171 136094 280 0 genus 1 939 940 1 Hydrogenobacter thermophilus species 0 280 1 genus 151 0 2713 63363 1 Aquifex aeolicus species 0 151 1186 0 6 Hydrogenobaculum genus 1 168657 38 0 1148 5 no rank 2622382 1 Hydrogenobaculum sp. 3684 species 0 238 547143 547146 1 species Hydrogenobaculum sp. SN 238 0 380749 0 196 1 species Hydrogenobaculum sp. Y04AAS1 547145 species Hydrogenobaculum sp. SHO 1 0 238 1 species Hydrogenobaculum sp. HO 238 0 547144 90150 470 0 1 no rank 412592 0 470 genus 1 412593 470 0 1 species Thermosulfidibacter takaii 2498710 clade 3 0 551 3 phylum 0 551 67814 0 551 3 class Caldisericia 1 693071 9 693072 2 order 0 542 693073 542 0 family 2 genus Caldisericum 1 2 0 542 1 693074 693075 1 Caldisericum exile species 541 0 200930 0 2765 11 phylum 2765 0 11 1 Deferribacteres class 68337 6 27 191393 10 order Deferribacterales 1 0 2759 191394 22 2732 0 9 Deferribacteraceae family 1 2 genus Deferribacter 1 0 739 2 53572 197162 1 species Deferribacter desulfuricans 737 0 2 1 genus Denitrovibrio 0 784 1 117999 1 species Denitrovibrio acetiphilus 0 783 118000 545865 2 556 0 genus Calditerrivibrio 1 2 0 554 1 species Calditerrivibrio nitroreducens 477976 1 Flexistipes genus 2 631 0 1 2351 2352 1 Flexistipes sinusarabici species 630 0 68297 4 phylum 1353 0 8 203486 4 1 class Dictyoglomia 0 1353 Dictyoglomales order 1 3 1345 0 14 203487 1331 0 family 2 203488 0 1331 genus 2 13 608 0 Dictyoglomus turgidum species 1 513050 14 723 0 1 Dictyoglomus thermophilum species 40117 5606 0 phylum 13 Nitrospira class 1 13 5606 0 57 203693 0 5549 order Nitrospirales 1 12 189778 54 11 189779 1 Nitrospiraceae family 11 0 5495 1383 0 Leptospirillum genus 1 4 179 4 261385 1 species group 0 451 Leptospirillum sp. Group II 'CF-1' species 1 451 0 1660083 1 species group 0 440 655606 species Leptospirillum ferrooxidans 1 440 0 180 0 488 1 species group 261386 178606 Leptospirillum ferriphilum species 1 0 488 1234 52 3498 0 1 Nitrospira genus 5 42253 1151 0 1 Nitrospira moscoviensis species 1715989 803 0 species Candidatus Nitrospira inopinata 1 1 species Nitrospira japonica 0 773 1325564 Nitrospira defluvii species 1 0 719 330214 28261 603 0 genus 1 28262 Thermodesulfovibrio yellowstonii species 1 0 603 0 2197453 1 Proteobacteria phylum 2022 1224 945 0 543020 351 1 Betaproteobacteria class 28216 1047 0 25685 1 order Rhodocyclales 22 206389 452 24 2008795 1 Azonexaceae family 3 1397 0 17 73029 2 genus Dechloromonas 1 1373 0 259537 1356 0 Dechloromonas aromatica species 1 75787 139 0 5713 6 1 Rhodocyclaceae family 75 146937 1 genus Azospira 2 0 3079 species Azospira oryzae 1 0 3004 146939 no rank 1 0 1066 75788 1898103 1 species Rhodocyclaceae bacterium 0 1066 551759 39 1429 0 2 1 Aromatoleum genus 0 1390 1 Aromatoleum aromaticum species 551760 12 family Zoogloeaceae 1 0 18123 441 2008794 6 1 Thauera genus 10400 0 295 33057 species Thauera aromatica 1 1679 0 59405 1134435 Thauera humireducens species 1 2066 0 Thauera chlorobenzoica species 1 0 1556 96773 2 no rank 4804 0 2609274 2325 0 Thauera sp. MZ1T species 1 85643 2005884 species Thauera sp. K11 1 0 2479 12960 330 0 7282 1 genus Azoarcus 5 1 species Azoarcus sp. SY39 1498 0 2067960 2629479 2 no rank 3827 0 748247 1766 0 1 species Azoarcus sp. KH32C 198107 species Azoarcus sp. CIB 1 2061 0 418699 1 Azoarcus olearius species 0 1627 0 456693 Burkholderiales order 1 234 80840 4584 80841 0 1966 no rank 2 0 835 1 species Burkholderiales bacterium GJ-E10 1469502 1834205 1 Burkholderiales bacterium YL45 species 0 1131 587 506 Alcaligenaceae family 1 42 0 71614 0 475 1 genus Taylorella 3 29574 2 1 species Taylorella asinigenitalis 220 0 84590 29575 253 0 1 Taylorella equigenitalis species 0 1658 genus Advenella 1 3 290425 7 310575 1 species Advenella kashmirensis 0 751 Advenella mimigardefordensis species 1 0 900 302406 genus 1 293 0 1472344 species Basilea psittacipulmonis 1 293 0 1472345 82 359336 2 1 Castellaniella genus 2335 0 Castellaniella defragrans species 1 2253 0 75697 90243 5 353 0 1 Oligella genus 2 0 348 species Oligella urethralis 1 90245 222 951 0 27108 1 Achromobacter genus 6 217203 4713 0 Achromobacter spanius species 1 85698 species Achromobacter xylosoxidans 1 0 10357 5969 0 1 Achromobacter denitrificans species 32002 1 Achromobacter insolitus species 0 2433 217204 2626865 2685 0 1 no rank 1758194 0 2685 1 species Achromobacter sp. AONIH1 2654 0 2 genus Orrella 1 1921582 37 1851544 1 species Orrella dioscoreae 2617 0 1147 517 genus Bordetella 1 17 33158 0 520 1721 0 species Bordetella pertussis 1 2126 0 Bordetella flabilis species 1 463014 1 species Bordetella genomosp. 6 2117 0 463024 0 2027 Bordetella trematum species 1 123899 species Bordetella petrii 1 0 1783 94624 species Bordetella genomosp. 13 1 0 2246 463040 1416806 2087 0 1 species Bordetella genomosp. 8 Bordetella holmesii species 1 0 750 35814 103855 0 2283 1 species Bordetella hinzii 521 Bordetella avium species 1 1042 0 1 Bordetella bronchialis species 2056 0 463025 1 species Bordetella bronchiseptica 3872 0 518 species Bordetella genomosp. 9 1 0 1717 1416803 1331258 Bordetella pseudohinzii species 1 2132 0 2630031 no rank 1 0 1949 1697043 1949 0 1 Bordetella sp. H567 species 1 Bordetella parapertussis species 0 2103 519 1100891 0 295 genus 1 643674 Paenalcaligenes hominis species 1 295 0 0 2112 1 Alcaligenes genus 2 507 14 1 species Alcaligenes faecalis 2098 0 511 0 586 Pusillimonas genus 1 2 305976 12 1 no rank 574 0 2640016 1007105 0 574 1 Pusillimonas sp. T7-7 species 1114 119060 84 1 Burkholderiaceae family 158933 0 0 18208 1 Ralstonia genus 5 48736 501 190721 2461 0 1 Ralstonia insidiosa species 8624 0 1 species Ralstonia solanacearum 305 4005 0 1 Ralstonia pickettii species 329 1 Ralstonia mannitolilytica species 2617 0 105219 442 1822464 12 Paraburkholderia genus 1 0 19413 148447 1816 0 Paraburkholderia phymatum species 1 1569 0 species Paraburkholderia fungorum 1 134537 75105 Paraburkholderia caribensis species 1 0 2476 1849 0 species Paraburkholderia aromaticivorans 1 2026199 0 1686 Paraburkholderia hospita species 1 169430 1728 0 1 Paraburkholderia sprentiae species 948107 0 1748 1 species Paraburkholderia xenovorans 36873 261302 1 Paraburkholderia phytofirmans species 1628 0 1479 0 1 species Paraburkholderia terrae 311230 252970 1 Paraburkholderia phenoliruptrix species 0 1729 0 1263 1 no rank 2615204 1926494 1 species Paraburkholderia sp. SOS3 1263 0 1 genus 1596 0 1827195 1 species Burkholderia sp. RPE64 1596 0 758793 724 0 1 genus 2571159 1 Paraburkholderia rhizoxinica species 0 724 412963 3931 32008 41 1 Burkholderia genus 0 81382 2613784 11 no rank 14630 0 1678678 1477 0 species Burkholderia sp. HB1 1 species Burkholderia sp. RPE67 1 0 1742 758796 640510 0 1470 1 Burkholderia sp. CCGE1001 species 416344 1 species Burkholderia sp. KJ006 0 992 640512 0 1513 1 Burkholderia sp. CCGE1003 species 1795874 0 1155 Burkholderia sp. PAMC 28687 species 1 Burkholderia sp. 2002721687 species 1 0 1037 1468409 1764 0 Burkholderia sp. YI23 species 1 1097668 0 1208 1 Burkholderia sp. PAMC 26561 species 1795043 1740162 952 0 1 Burkholderia sp. Bp5365 species 1740163 1 species Burkholderia sp. Bp7605 1320 0 41899 1 species Burkholderia plantarii 0 2231 111527 0 11761 species group 7 57975 2538 0 1 Burkholderia thailandensis species 1051 0 species Burkholderia mallei 1 13373 species Burkholderia sp. MSMB0266 1 0 1142 1637837 species Burkholderia sp. MSMB0852 1 1134 0 1637841 342113 0 1697 Burkholderia oklahomensis species 1 28450 0 3142 1 species Burkholderia pseudomallei 1637831 species Burkholderia sp. MSMB617WGS 1 0 1057 species group 19 0 41273 87882 60550 1 Burkholderia pyrrocinia species 0 989 87883 1 species Burkholderia multivorans 3199 0 488732 Burkholderia diffusa species 1 944 0 482957 Burkholderia lata species 1 0 2212 species Burkholderia territorii 1 1017 0 1503055 101571 4356 0 1 Burkholderia ubonensis species 265293 [Pseudomonas] mesoacidophila species 1 0 1754 0 1970 Burkholderia vietnamiensis species 1 60552 152500 1177 0 Burkholderia dolosa species 1 Burkholderia cepacia species 1 0 7109 292 species Burkholderia latens 1 0 1038 488446 488731 Burkholderia seminalis species 1 1018 0 1 Burkholderia ambifaria species 1558 0 152480 488729 1 Burkholderia metallica species 0 874 95486 species Burkholderia cenocepacia 1 5981 0 Burkholderia contaminans species 1 0 1252 488447 1503054 1497 0 1 species Burkholderia stagnalis 95485 1 species Burkholderia stabilis 0 2141 1207504 0 1187 1 species Burkholderia pseudomultivorans 1 Burkholderia glumae species 3721 0 337 28095 0 3835 1 species Burkholderia gladioli 3 44013 genus Polynucleobacter 1 4 0 849 576610 1 species Polynucleobacter necessarius 0 240 263 0 Polynucleobacter asymbioticus species 1 576611 1835254 0 343 1 species Polynucleobacter duraquae 0 12796 1 genus Pandoraea 10 93217 225 656179 0 1267 species Pandoraea faecigallinarum 1 93221 1 species Pandoraea pulmonicola 1362 0 0 1357 Pandoraea apista species 1 93218 species Pandoraea thiooxydans 1 1216 0 445709 93219 1331 0 Pandoraea norimbergensis species 1 1 species Pandoraea pnomenusa 0 1743 93220 1 Pandoraea sputorum species 1122 0 93222 0 1526 1 Pandoraea vervacti species 656178 573737 1 species Pandoraea oxalativorans 0 1647 868 106589 Cupriavidus genus 1 9 0 22851 0 6453 no rank 2 2640874 876364 0 3241 1 species Cupriavidus sp. USMAA2-4 1389192 species Cupriavidus sp. USMAHM13 1 0 3212 1 species Cupriavidus pinatubonensis 0 2271 248026 species Cupriavidus sp. USMAA1020 1 3148 0 367825 1 species Cupriavidus basilensis 2202 0 68895 2049 0 Cupriavidus metallidurans species 1 119219 1 Cupriavidus gilardii species 1924 0 82541 0 3936 1 species Cupriavidus necator 106590 80864 1699 95408 0 59 1 family Comamonadaceae 2 1 Ramlibacter genus 0 4907 44 174951 94132 1 Ramlibacter tataouinensis species 0 4863 13 352450 1 Simplicispira genus 2 1221 0 species Simplicispira sp. SC1-8 1 1208 0 2109915 52972 31 0 3598 3 Polaromonas genus 1 216465 Polaromonas naphthalenivorans species 1 0 1862 2638319 no rank 1 0 1705 species Polaromonas sp. JS666 1 0 1705 296591 Ottowia genus 1 3 3940 0 22 219181 2109914 1 Ottowia sp. KADR8-3 species 0 1873 2045 0 1 no rank 2645081 1658672 2045 0 Ottowia sp. oral taxon 894 species 1 80865 455 13203 0 5 Delftia genus 1 species Delftia tsuruhatensis 1 0 3303 180282 species Delftia acidovorans 1 0 2862 80866 6583 0 2 no rank 2613839 0 3185 Delftia sp. HK171 species 1 1920191 742013 1 Delftia sp. Cs1-4 species 0 3398 364316 6 1786 0 Verminephrobacter genus 1 2 1 Verminephrobacter eiseniae species 0 1780 364317 21 238749 genus Diaphorobacter 1 2 0 2097 1546149 0 2076 1 species Diaphorobacter polyhydroxybutyrativorans 2490452 0 2562 genus 2 Comamonadaceae bacterium B1 species 1 1359 0 1458426 species Comamonadaceae bacterium A1 1 1203 0 1458425 665874 23 0 1441 1 genus Limnohabitans 3 2626134 0 1418 no rank 2 1678129 1 species Limnohabitans sp. 103DPR2 0 524 894 0 1 species Limnohabitans sp. 63ED37-2 1678128 0 16160 9 genus Acidovorax 1 12916 757 80867 2065 0 1 Acidovorax avenae species 0 1943 1 species Acidovorax ebreus 721785 Acidovorax citrulli species 1 1952 0 80869 553814 1493 0 1 species Acidovorax sp. NA3 2684926 7950 0 no rank 4 1858609 1 Acidovorax sp. T1 species 0 1879 species Acidovorax sp. RAC01 1 0 1841 1842533 358220 Acidovorax sp. KKS102 species 1 2120 0 1 species Acidovorax sp. JS42 0 2110 232721 2 1436289 genus Candidatus Symbiobacter 1 2 0 990 1436290 0 988 species Candidatus Symbiobacter mobilis 1 2272 0 2 1 Melaminivora genus 1649468 49 2641902 0 2223 no rank 1 2109913 0 2223 1 Melaminivora sp. SC2-9 species 2656 0 1 Alicycliphilus genus 2 201096 17 179636 Alicycliphilus denitrificans species 1 0 2639 Variovorax genus 1 5 0 14567 344 34072 34073 Variovorax paradoxus species 1 0 6454 2 no rank 0 4850 663243 1795631 0 1395 1 species Variovorax sp. PAMC 28711 2126319 0 3455 species Variovorax sp. PMC12 1 436515 1 Variovorax boronicumulans species 2919 0 0 7630 4 1 Comamonas genus 283 40 225992 0 1732 1 Comamonas kerstersii species 1909 0 1 Comamonas serinivorans species 1082851 285 1 species Comamonas testosteroni 3949 0 2678886 2272 0 1 genus 2116657 0 2272 Melaminivora sp. SC2-7 species 1 0 5380 4 1 genus Hydrogenophaga 47420 110 2610897 no rank 2 4149 0 Hydrogenophaga sp. PBC species 1 2413 0 795665 1842537 1 Hydrogenophaga sp. RAC07 species 0 1736 1 species Hydrogenophaga crassostreae 1121 0 1763535 126 28065 1 genus Rhodoferax 5 7027 0 0 2480 Rhodoferax koreense species 1 1842727 81479 Rhodoferax antarcticus species 1 0 1293 192843 1 species Rhodoferax ferrireducens 0 1416 Rhodoferax saidenbachensis species 1 0 1712 1484693 224471 21739 0 17 no rank 93681 94 2531 0 Roseateles genus 1 2 76731 0 2437 Roseateles depolymerans species 1 2 1 Methylibium genus 0 2019 104 316612 1 Methylibium petroleiphilum species 1915 0 105560 122 212743 2 1 Rhizobacter genus 2567 0 2445 0 1 species Rhizobacter gummiphilus 946333 61 318147 1 Paucibacter genus 2 0 1887 no rank 1 0 1826 2642959 1768242 0 1826 Paucibacter sp. KCTC 42545 species 1 88 88 2 Leptothrix genus 1 0 2247 0 2159 1 Leptothrix cholodnii species 34029 28067 139 3220 0 1 Rubrivivax genus 2 28068 Rubrivivax gelatinosus species 1 0 3081 2590 0 1 genus Mitsuaria 2 65047 129 2461 0 1 no rank 2648776 0 2461 1 species Mitsuaria sp. 7 1658665 2 1 Thiomonas genus 2793 0 55 32012 Thiomonas intermedia species 1 2738 0 926 1 [Polyangium] brachysporum species 0 1885 413882 102449 0 29 1 Oxalobacteraceae family 75682 367 303379 20 1073 0 3 1 genus Herminiimonas 1809410 species Herminiimonas arsenitoxidans 1 0 521 species Herminiimonas arsenicoxydans 1 0 532 204773 451 963 Herbaspirillum genus 1 6 0 10439 341045 Herbaspirillum hiltneri species 1 1317 0 1 species Herbaspirillum seropedicae 2842 0 964 species Herbaspirillum rubrisubalbicans 1 2028 0 80842 2624150 1 no rank 1079 0 1 Herbaspirillum sp. meg3 species 0 1079 2025949 92645 Herbaspirillum frisingense species 1 2722 0 202907 144 6789 0 genus Collimonas 1 4 1 Collimonas arenae species 2289 0 279058 158899 0 2185 1 species Collimonas fungivorans 0 2171 Collimonas pratensis species 1 279113 195 29580 Janthinobacterium genus 1 7 10021 0 368607 2133 0 1 species Janthinobacterium svalbardensis no rank 4 6036 0 2610881 1236179 1 Janthinobacterium sp. B9-8 species 723 0 375286 711 0 1 Janthinobacterium sp. Marseille species 1938606 Janthinobacterium sp. LM6 species 1 0 2185 1644131 species Janthinobacterium sp. 1_2014MBL_MicDiv 1 2417 0 1 species Janthinobacterium agaricidamnosum 0 1657 55508 60172 0 2 1 Oxalobacter genus 846 3 1 Oxalobacter formigenes species 0 60169 847 368 149698 6 Massilia genus 1 0 13588 3239 0 1 Massilia sp. ZMN-3 species 2072590 2689 0 Massilia putida species 1 1141883 2 no rank 0 5238 2609279 1 Massilia sp. WG5 species 2434 0 1707785 2804 0 Massilia sp. NR 4-1 species 1 1678028 2045208 Massilia sp. B2 species 1 2054 0 206351 423 0 37587 36 1 order Neisseriales 22 Neisseriaceae family 1 18310 0 235 481 0 340 1 genus 71 340 0 1 species Simonsiella muelleri 72 0 1168 2 genus Eikenella 1 538 6 0 1162 Eikenella corrodens species 1 539 0 688 2 1 genus Snodgrassella 1193515 3 1196083 0 685 Snodgrassella alvi species 1 421605 1 no rank 0 396 396 0 1 species Neisseriaceae bacterium DSM 100970 2052837 3 genus Vitreoscilla 1 1893 0 67 59 species Vitreoscilla filiformis 1 1454 0 63 1 no rank 0 372 2627922 96942 1 species Vitreoscilla sp. C1 0 372 13590 0 12 genus Neisseria 1 482 316 488 Neisseria mucosa species 1 766 0 485 1 Neisseria gonorrhoeae species 877 0 2927 0 species Neisseria meningitidis 1 487 1853278 1508 0 1 Neisseria sp. 10023 species 2623750 2614 0 no rank 2 0 718 1 Neisseria sp. 10022 species 1853276 655307 1896 0 1 species Neisseria sp. KEM232 1320 0 species Neisseria lactamica 1 486 628 0 1 Neisseria weaveri species 28091 814 0 Neisseria sicca species 1 490 495 Neisseria elongata species 1 0 905 326523 915 0 species Neisseria zoodegmatis 1 13 family Chromobacteriaceae 1 0 18854 244 1499392 38 885864 Jeongeupia genus 1 2 2054 0 0 2016 1 no rank 2619593 0 2016 1 Jeongeupia sp. USM3 species 1906741 90153 4 no rank 0 10128 208 535 4 1 genus Chromobacterium 0 10128 2641838 1 no rank 0 3086 2059672 3086 0 1 Chromobacterium sp. ATCC 53434 species species Chromobacterium violaceum 1 2944 0 536 0 3890 Chromobacterium vaccinii species 1 1108595 2 1 Pseudogulbenkiania genus 2410 0 60 568394 0 2350 1 no rank 2642558 748280 2350 0 1 species Pseudogulbenkiania sp. NH8B 19 187 1 genus Aquaspirillum 2 0 1953 2620219 no rank 1 1934 0 1938604 Aquaspirillum sp. LM1 species 1 1934 0 0 2065 genus Laribacter 1 2 168470 12 168471 2053 0 1 Laribacter hongkongensis species 0 2319 12 no rank 119066 6 genus Kinetoplastibacterium 1 836 0 9 33055 994696 Candidatus Kinetoplastibacterium oncopeltii species 1 0 135 211 0 1 Candidatus Kinetoplastibacterium crithidii species 33056 0 167 1 Candidatus Kinetoplastibacterium galatii species 994695 157 0 species Kinetoplastibacterium blastocrithidii 1 233181 994692 species Candidatus Kinetoplastibacterium desouzaii 1 157 0 1301080 1 genus 0 41 0 41 species Candidatus Nasuia deltocephalinicola 1 1160784 189384 0 4 1 genus 189385 species Candidatus Tremblaya princeps 1 4 0 1 genus Candidatus Profftella 2 77 0 2 1381133 1 Candidatus Profftella armatura species 0 75 669502 Candidatus Accumulibacter genus 1 2 1361 0 46 327159 327160 1315 0 1 species Candidatus Accumulibacter phosphatis 44 Nitrosomonadales order 1 0 17631 193 32003 10 2008790 3 Thiobacillaceae family 1 0 1284 11 919 genus Thiobacillus 1 2 1274 0 36861 0 1263 1 species Thiobacillus denitrificans 2772226 family 4 0 2045 1005 0 1 Sulfuricella genus 2 935200 17 649841 0 988 species Sulfuricella denitrificans 1 2 1 Sulfuriferula genus 0 1040 25 1778653 0 1015 no rank 1 2637784 0 1015 1 species Sulfuriferula sp. AH1 1985873 110 90627 5 1 family Gallionellaceae 0 2252 55 314343 2 1 genus Sideroxydans 0 1322 63745 1 species Sideroxydans lithotrophicus 0 1267 0 820 genus Gallionella 1 2 96 11 species Gallionella capsiferriformans 1 809 0 370405 206379 25 4475 0 1 family Nitrosomonadaceae 12 Nitrosomonas genus 1 7 0 2504 10 914 776 0 2 no rank 2609265 Nitrosomonas sp. AL212 species 1 402 0 153948 261292 1 species Nitrosomonas sp. Is79A3 0 374 428 0 1 Nitrosomonas ureae species 44577 44574 1 Nitrosomonas communis species 375 0 347 0 1 Nitrosomonas eutropha species 916 0 568 species Nitrosomonas europaea 1 915 genus Nitrosospira 1 4 1946 0 3 35798 0 495 species Nitrosospira lacus 1 1288494 Nitrosospira multiformis species 1 0 614 1231 1 species Nitrosospira briensis 0 834 35799 21 32011 1 family Methylophilaceae 14 3839 0 16 2 0 501 Methylophilus genus 1 2 no rank 1 499 0 2630143 0 499 Methylophilus sp. TWE2 species 1 1662285 3 Methylotenera genus 1 630 0 17 359407 359408 species Methylotenera mobilis 1 304 0 1055487 309 0 1 Methylotenera versatilis species 0 794 Methylobacillus genus 1 2 404 16 405 species Methylobacillus flagellatus 1 0 778 Candidatus Methylopumilus genus 1 3 0 499 1 1679002 1581680 0 259 species Candidatus Methylopumilus turicensis 1 species Candidatus Methylopumilus planktonicus 1 0 239 1581557 16 81682 genus Methylovorus 1 3 0 1394 266009 722 0 1 species Methylovorus glucosotrophus 0 656 1 no rank 2634027 887061 0 656 1 species Methylovorus sp. MP688 3543 0 family Sterolibacteriaceae 1 5 2008793 77 378210 16 0 1662 2 1 Methyloversatilis genus 1646 0 1 no rank 2639971 1842540 1 species Methyloversatilis sp. RAC08 1646 0 1054211 46 0 1804 1 Sulfuritalea genus 2 748811 Sulfuritalea hydrogenivorans species 1 1758 0 33809 0 2058 no rank 2 543913 0 268 1 beta proteobacterium CB species species Betaproteobacteria bacterium GR16-43 1 1790 0 1904640 580370 1 1988 0 Zetaproteobacteria class 1 6 1987 0 1 order Mariprofundales 5 580371 28 13 580372 4 Mariprofundaceae family 1 0 1959 1 Mariprofundus genus 3 0 1946 4 377315 1921087 Mariprofundus ferrinatatus species 1 0 1008 Mariprofundus aestuarium species 1 934 0 1921086 1236 2148 0 837010 class Gammaproteobacteria 1 885 33811 0 3008 no rank 2 1 endosymbiont of unidentified scaly snail isolate Monju species 0 1690 1248727 83406 0 1318 1 gamma proteobacterium HdN1 species 0 1249 1 order Nevskiales 4 1775403 25 0 1209 2 family 2689614 469322 2 0 1209 2 Steroidobacter genus 1 1207 0 1 Steroidobacter denitrificans species 465721 568386 15 0 1 family Sinobacteraceae 74 135618 11 1 Methylococcales order 0 7138 0 7064 10 1 Methylococcaceae family 403 65 762296 1 genus 924 0 1704499 1 species Methylovulum psychrotolerans 0 924 416 56 0 3955 1 Methylomonas genus 5 1538553 Methylomonas denitrificans species 1 809 0 Methylomonas koyamae species 1 0 1123 702114 2608980 no rank 1 1179 0 1727196 1 species Methylomonas sp. DH-1 1179 0 421 788 0 1 species Methylomonas methanica 39773 1 genus 626 0 species Methylomicrobium alcaliphilum 1 626 0 271065 19 413 2 Methylococcus genus 1 1494 0 1 species Methylococcus capsulatus 0 1475 414 72273 6 10714 0 order Thiotrichales 1 31 0 6547 1 family Francisellaceae 14 34064 29 genus 1 0 194 1869285 194 0 species Allofrancisella guangzhouensis 1 594679 6324 0 1 Francisella genus 12 262 57 777 0 2 no rank 2610885 423 0 species Francisella sp. MA067296 1 475375 1547445 0 354 Francisella sp. FSC1006 species 1 28110 1 species Francisella philomiragia 1008 0 564 0 1 species Francisella sp. TX077310 573570 549298 414 0 1 Francisella halioticida species 573569 1 Francisella sp. TX077308 species 396 0 0 485 1 species Francisella sp. CA97-1460 1542390 657445 1 species Francisella noatunensis 768 0 263 1 Francisella tularensis species 0 1235 346 0 species Francisella hispaniensis 1 622488 0 274 Francisella persica species 1 954 135617 808 0 3 family 40751 398 0 1 genus 398 0 1 Thioploca ingrica species 40754 2 1 genus Beggiatoa 410 0 6 1021 1 Beggiatoa leptomitoformis species 404 0 288004 13 Piscirickettsiaceae family 1 0 3353 40 135616 2 34067 Cycloclasticus genus 1 4 972 0 2621467 663 0 no rank 2 385025 Cycloclasticus sp. P1 species 1 0 298 728003 1 Cycloclasticus sp. PY97N species 365 0 307 0 1 species Cycloclasticus zancles 1329899 28884 3 0 369 Hydrogenovibrio genus 1 2 39765 0 366 1 Hydrogenovibrio crunogenus species 1237 genus 1 0 596 1238 1 species Piscirickettsia salmonis 596 0 933 6 0 527 3 Thiomicrospira genus 1 92245 species Thiomicrospira aerophila 1 254 0 147268 0 267 species Thiomicrospira cyclica 1 40222 2 genus 0 849 species Methylophaga nitratireducenticrescens 1 0 523 754476 754477 326 0 1 species Methylophaga frappieri 0 41057 1 order Oceanospirillales 70 135619 479 255527 6 1400 0 5 1 Saccharospirillaceae family 2 genus Gynuella 1 0 837 6 1445504 1445505 0 831 Gynuella sunshinyii species 1 2 Reinekea genus 1 0 557 4 230494 1336806 Reinekea forsetii species 1 0 553 6378 0 family Alcanivoracaceae 1 9 224372 87 0 816 2 genus Ketobacter 1 2025617 5 811 0 1 species Ketobacter alkanivorans 1917421 Alcanivorax genus 1 6 5475 0 144 59753 285091 species Alcanivorax dieselolei 1 1333 0 1321 0 1 species Alcanivorax xenomutans 1094342 0 496 1 no rank 2638842 1113728 0 496 Alcanivorax sp. NBRC 101098 species 1 1306787 1 Alcanivorax pacificus species 0 1704 59754 0 477 1 species Alcanivorax borkumensis 350 28256 30 1 family Halomonadaceae 24660 0 404432 10 1615 0 Salinicola genus 1 2 1771309 1 Salinicola tamaricis species 0 1605 1109 0 2 Halotalea genus 1 376488 17 376489 Halotalea alkalilenta species 1 1092 0 21 504090 3 1 Kushneria genus 0 2736 698828 1 species Kushneria konosiri 0 1279 1 Kushneria marisflavi species 1436 0 157779 168 0 3 no rank 114403 235572 genus 1 52 0 91844 1 species Candidatus Portiera aleyrodidarum 0 52 114185 0 13 1 genus 114186 1 Candidatus Carsonella ruddii species 0 13 0 103 1 genus 1495768 species Candidatus Evansia muelleri 1 0 103 1495769 1 Chromohalobacter genus 2 0 1358 15 42054 158080 1343 0 1 species Chromohalobacter salexigens 343 2745 15 1 genus Halomonas 0 15683 601 0 1 Halomonas campaniensis species 213554 115561 1 Halomonas hydrothermalis species 0 1441 1897729 1779 0 species Halomonas aestuarii 1 0 815 1 species Halomonas huangheensis 1178482 507626 1400 0 1 species Halomonas chromatireducens 0 7195 8 no rank 2609666 1971364 570 0 Halomonas sp. GT species 1 1118153 1 Halomonas sp. GFAJ-1 species 0 436 2136172 0 1511 1 Halomonas sp. SF2003 species 1883416 Halomonas sp. 1513 species 1 1957 0 598 0 1 species Halomonas sp. 'Soap Lake #7' 1962264 1949203 598 0 species Halomonas sp. 'Soap Lake #6' 1 1504981 1 species Halomonas sp. KO116 0 709 816 0 1 species Halomonas sp. R57-5 1610576 species Halomonas beimenensis 1 0 2109 475662 0 1641 2 genus Cobetia 1 204286 15 28258 1626 0 1 species Cobetia marina 0 1003 3 Hahellaceae family 1 224379 4 10 158481 genus Hahella 1 2 0 999 158327 species Hahella chejuensis 1 989 0 2 191033 Oleiphilaceae family 1 3 539 0 141450 6 537 0 2 Oleiphilus genus 1 141451 531 0 1 species Oleiphilus messinensis 1920240 5 0 1384 family Kangiellaceae 1 6 5 1 genus Kangiella 0 1379 32 261963 1144748 1 Kangiella sediminilitoris species 373 0 262 0 1 Kangiella geojedonensis species 914150 1561924 297 0 1 Kangiella profundi species 415 0 Kangiella koreensis species 1 261964 0 5214 family Oceanospirillaceae 1 13 135620 70 5 1537406 1 Bacterioplanes genus 2 754 0 1249553 1 species Bacterioplanes sanyensis 749 0 2 genus Oleispira 1 515 0 1 188907 0 514 species Oleispira antarctica 1 188908 2 Thalassolituus genus 1 496 0 2 187492 187493 0 494 1 Thalassolituus oleivorans species 21 28253 4 1 Marinomonas genus 1729 0 936476 Marinomonas posidonica species 1 496 0 196814 0 631 no rank 1 1 species Marinomonas sp. MWYL1 631 0 400668 0 581 1 species Marinomonas mediterranea 119864 48075 10 0 1650 2 genus Marinobacterium 1 1821621 1640 0 1 Marinobacterium aestuarii species 278497 0 245 1 order Enterobacterales 91347 1226 44 1903412 1 family Hafniaceae 14 0 13035 1 genus Obesumbacterium 2 0 621 33 82982 0 588 1 species Obesumbacterium proteus 82983 8 genus Edwardsiella 1 0 10417 447 635 1263550 species Edwardsiella piscicida 1 0 1378 1 species Edwardsiella ictaluri 0 1026 67780 1821960 0 1272 1 species Edwardsiella anguillarum 636 1 species Edwardsiella tarda 2455 0 2676541 0 2738 no rank 2 1578828 1484 0 species Edwardsiella sp. EA181011 1 1254 0 species Edwardsiella sp. LADL05-105 1 1650654 93378 1101 0 species Edwardsiella hoshinae 1 1953 0 3 genus Hafnia 1 568 44 478 0 1 no rank 2621980 species Hafnia sp. CBA7124 1 0 478 1848580 1431 0 1 species Hafnia alvei 569 3 1 family Budviciaceae 0 609 1 1903416 genus Pragia 1 2 0 608 6 82984 82985 602 0 Pragia fontium species 1 21 family Morganellaceae 1 10042 0 35 1903414 586 26 1385 0 4 1 genus Providencia 0 676 species Providencia stuartii 1 588 587 0 353 Providencia rettgeri species 1 126385 330 0 1 species Providencia alcalifaciens 581 39 0 2304 genus Morganella 1 2 582 2265 0 Morganella morganii species 1 29487 42 1919 0 4 Photorhabdus genus 1 291112 1 species Photorhabdus asymbiotica 0 641 574560 571 0 species Photorhabdus temperata 1 29488 0 665 species Photorhabdus luminescens 1 637 187 0 genus 1 634113 187 0 1 species Arsenophonus symbiont of Lipoptena fortisetosa 583 28 1328 0 1 Proteus genus 3 584 0 818 1 Proteus mirabilis species 585 0 482 1 Proteus vulgaris species 6 genus Xenorhabdus 1 2884 0 31 626 40577 1 Xenorhabdus poinarii species 444 0 species Xenorhabdus hominickii 1 0 492 351679 1 Xenorhabdus doucetiae species 0 618 351671 562 0 species Xenorhabdus nematophila 1 628 737 0 1 species Xenorhabdus bovienii 40576 1903411 179 0 50655 1 family Yersiniaceae 39 25 1745211 1 genus Chania 2 813 0 1 Chania multitudinisentens species 0 788 1639108 9067 0 13 genus Yersinia 1 629 219 1649845 species group 3 0 1442 0 612 species Yersinia pseudotuberculosis 1 633 1 Yersinia similis species 0 398 367190 632 0 432 species Yersinia pestis 1 263819 622 0 Yersinia aleksiciae species 1 species Yersinia frederiksenii 1 0 1804 29484 0 1837 1 Yersinia enterocolitica species 630 29485 Yersinia rohdei species 1 511 0 1 Yersinia ruckeri species 0 549 29486 28152 581 0 1 species Yersinia kristensenii 544 0 Yersinia aldovae species 1 29483 1 species Yersinia intermedia 497 0 631 2653513 461 0 no rank 1 1839800 0 461 species Yersinia sp. FDAARGOS_228 1 78 34037 4 Rahnella genus 1 0 3720 species Rahnella aquatilis 1 0 1215 34038 no rank 2 2427 0 2635087 1261 0 species Rouxiella sp. ERMR1:05 1 1805933 741091 0 1166 1 Rahnella sp. Y9602 species 1656 0 1 genus Gibbsiella 2 929812 5 929813 Gibbsiella quercinecans species 1 0 1651 0 32 genus Rouxiella 1 1565532 0 35188 16 Serratia genus 1 613 1848 0 8714 1 Serratia marcescens species 615 614 0 1407 species Serratia liquefaciens 1 61651 2532 0 Serratia ficaria species 1 Serratia rubidaea species 1 1891 0 61652 47917 1 Serratia fonticola species 0 2899 1006 0 Serratia proteamaculans species 1 28151 1 Serratia plymuthica species 0 3377 82996 2647522 0 11514 8 no rank Serratia sp. SCBI species 1 0 1939 488142 671990 0 1482 1 species Serratia sp. FGI94 0 1655 Serratia sp. SSNIH1 species 1 1758196 768493 Serratia sp. AS13 species 1 0 1117 0 1117 Serratia sp. AS12 species 1 768490 2033438 species Serratia sp. MYb239 1 1455 0 1327989 0 1954 1 Serratia sp. FS14 species 0 795 Serratia sp. ATCC 39006 species 1 104623 family Pectobacteriaceae 1 20 0 22349 74 1903410 2 1 genus Brenneria 1525 0 13 71655 1109412 species Brenneria goodwinii 1 1512 0 98 84565 1 Sodalis genus 5 2638 0 0 637 species Candidatus Sodalis pierantonius 1 1486991 619 0 1 species Sodalis glossinidius 63612 1929246 1 species Sodalis endosymbiont of Henestaris halophilus 0 100 Sodalis praecaptivus species 1 0 1184 1239307 8003 0 6 Pectobacterium genus 1 122277 237 554 1 species Pectobacterium carotovorum 3659 0 0 1496 1 Pectobacterium polaris species 2042057 0 858 1 species Pectobacterium parmentieri 1905730 55208 0 769 species Pectobacterium wasabiae 1 29471 0 984 1 Pectobacterium atrosepticum species 1 genus Dickeya 6 0 10109 338 204037 1778540 species Dickeya fangzhongdai 1 0 1713 1527 0 1 Dickeya dianthicola species 204039 1834 0 1 Dickeya zeae species 204042 1756 0 Dickeya dadantii species 1 204038 1089444 2941 0 1 species Dickeya solani 0 1270 no rank 2 451511 11 702 Plesiomonas genus 1 2 0 1270 1259 0 1 species Plesiomonas shigelloides 703 0 154251 1 family Enterobacteriaceae 117 543 1490 23 1330546 3 Pluralibacter genus 1 5077 0 61647 0 3078 Pluralibacter gergoviae species 1 1334193 0 1976 [Enterobacter] lignolyticus species 1 158483 8 3933 0 2 1 Cedecea genus 158822 0 3925 1 Cedecea neteri species 133 0 2 1 genus Candidatus Moranella 1048757 2 Candidatus Moranella endobia species 1 0 131 1048758 153 620 4 genus Shigella 1 0 2115 no rank 1 0 600 2629414 600 0 1 Shigella sp. PAMC 28760 species 1813821 622 1 species Shigella dysenteriae 879 0 623 0 483 1 species Shigella flexneri 0 7159 3 Salmonella genus 1 590 39 943 0 Salmonella bongori species 1 54736 28901 1 Salmonella enterica species 0 6177 0 33317 Enterobacter genus 1 22 547 1855 354276 species group 12 0 23059 1 species Enterobacter asburiae 2864 0 61645 3 species Enterobacter hormaechei 1 0 5104 3322 158836 744 0 Enterobacter xiangfangensis subspecies 1 1296536 1812934 0 1038 1 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies Enterobacter cloacae species 1 9036 0 550 208224 771 0 1 Enterobacter kobei species 299767 species Enterobacter ludwigii 1 808 0 1201 0 species Enterobacter cancerogenus 1 69218 3 no rank 2365 0 2757714 2077137 796 0 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 2027919 1 species Enterobacter cloacae complex bacterium 812 0 1915310 1 Enterobacter cloacae complex sp. ECNIH7 species 757 0 1812935 910 0 1 Enterobacter cloacae complex 'Hoffmann cluster IV' species 2608935 9 no rank 8403 0 1692238 1 Enterobacter sp. FY-07 species 1230 0 2051905 1083 0 1 Enterobacter sp. CRENT-193 species 549 0 Enterobacter sp. HK169 species 1 1868135 1914861 1 Enterobacter sp. SA187 species 1675 0 0 913 species Enterobacter sp. 638 1 399742 1827481 840 0 1 Enterobacter sp. ODB01 species 1560339 0 513 species Enterobacter sp. E20 1 1977566 Enterobacter sp. Crenshaw species 1 0 443 1166130 0 1157 1 Enterobacter sp. R4-368 species 401618 180 0 genus 1 1 species Candidatus Riesia pediculicola 180 0 401619 6166 0 5 no rank 36866 1920128 species Enterobacteriaceae bacterium ENNIH3 1 1317 0 1920109 species Enterobacteriaceae bacterium ENNIH2 1 1232 0 1286 0 1 Plautia stali symbiont species 891974 2066051 species Enterobacteriaceae bacterium ENNIH1 1 1223 0 693444 Enterobacteriaceae bacterium strain FGI 57 species 1 1108 0 191675 2208 0 18 no rank 18 clade 0 2208 84563 84564 7 clade 0 690 203804 2 0 690 7 genus Candidatus Blochmannia 1 94 0 Candidatus Blochmannia vafer species 1 251535 251542 1 Candidatus Blochmannia chromaiodes species 123 0 0 270 no rank 2 711328 1 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 173 1505597 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 0 97 1505596 1 Candidatus Blochmannia pennsylvanicus species 122 0 101534 203907 Candidatus Blochmannia floridanus species 1 79 0 genus 1 0 201 1682492 0 201 species Candidatus Tachikawaea gelatinosa 1 1410383 621 0 clade 3 146507 1 species secondary endosymbiont of Heteropsylla cubana 0 154 134287 0 285 species secondary endosymbiont of Ctenarytaina eucalypti 1 1199245 568987 182 0 genus 1 1 Candidatus Hamiltonella defensa species 0 182 138072 0 186 genus 1 1906661 1070130 0 186 Candidatus Gullanella endobia species 1 1 1906660 genus Candidatus Mikella 1 2 182 0 1 Candidatus Mikella endobia species 0 181 1778264 96 0 1 genus Candidatus Hoaglandella 2 1906659 4 1778263 92 0 1 Candidatus Hoaglandella endobia species 49 0 clade 1 199891 1835721 49 0 1 secondary endosymbiont of Trabutina mannipara species 1906657 genus 1 183 0 0 183 species Candidatus Doolittlea endobia 1 1778262 561 129 0 11003 5 genus Escherichia 1 0 772 Escherichia marmotae species 1 1499973 562 1 Escherichia coli species 0 8096 564 603 0 1 species Escherichia fergusonii 208962 Escherichia albertii species 1 0 1403 0 10481 8 1 genus Cronobacter 413496 351 413501 0 1594 1 Cronobacter muytjensii species 413497 0 1507 species Cronobacter dublinensis 1 1303 0 1 Cronobacter universalis species 535744 1163710 1 Cronobacter condimenti species 0 1158 1060 0 species Cronobacter malonaticus 1 413503 413502 1 Cronobacter turicensis species 0 1323 28141 1 species Cronobacter sakazakii 2185 0 1330545 30 4370 0 genus Lelliottia 1 4 69220 1282 0 1 species Lelliottia nimipressuralis 61646 1 species Lelliottia amnigena 0 1963 1907578 1095 0 species Lelliottia jeotgali 1 997 570 genus Klebsiella 1 10 0 29133 species Klebsiella variicola 1 2891 0 244366 1463165 1754 0 species Klebsiella quasipneumoniae 1 Klebsiella pneumoniae species 1 0 8070 573 0 2214 1 Klebsiella aerogenes species 548 species Klebsiella oxytoca 1 0 5676 571 2608929 3163 0 2 no rank 1747 0 Klebsiella sp. M5al species 1 1934254 1905288 1 Klebsiella sp. LTGPAF-6F species 1416 0 species Klebsiella michiganensis 1 2995 0 1134687 0 1373 Klebsiella quasivariicola species 1 2026240 224 83654 4 genus Leclercia 1 0 4050 1104 0 species Leclercia adecarboxylata 1 83655 0 2722 no rank 2 2627398 1 Leclercia sp. LSNIH3 species 1209 0 1920116 1513 0 Leclercia sp. LSNIH1 species 1 1920114 781 544 14 1 Citrobacter genus 0 20418 0 10648 7 species group 1344959 67827 1765 0 1 Citrobacter werkmanii species 2077149 1 Citrobacter freundii complex sp. CFNIH9 species 0 682 Citrobacter braakii species 1 1575 0 57706 1 Citrobacter freundii species 0 3767 546 1 species Citrobacter freundii complex sp. CFNIH3 693 0 2077147 0 929 Citrobacter freundii complex sp. CFNIH4 species 1 2077148 2066049 1237 0 1 species Citrobacter freundii complex sp. CFNIH2 67824 1075 0 Citrobacter farmeri species 1 2644389 0 2116 no rank 2 1702170 979 0 1 species Citrobacter sp. FDAARGOS_156 species Citrobacter sp. CFNIH10 1 1137 0 1920110 Citrobacter koseri species 1 1221 0 545 Citrobacter amalonaticus species 1 0 3100 35703 1 species Citrobacter rodentium 1477 0 67825 409304 169 0 1 genus 168169 1 species Candidatus Ishikawaella capsulata 169 0 1 genus 0 1214 579 61648 1214 0 Kluyvera intermedia species 1 55 1330547 5 Kosakonia genus 1 0 5400 0 1591 Kosakonia cowanii species 1 208223 497725 0 1119 Kosakonia oryzae species 1 Kosakonia radicincitans species 1 0 1386 283686 1158459 1249 0 1 Kosakonia sacchari species 1335483 genus 1 0 1204 563 1204 0 species Shimwellia blattae 1 160674 47 0 5031 genus Raoultella 1 3 54291 0 3399 species Raoultella ornithinolytica 1 0 1585 1 Raoultella planticola species 575 25060 0 28 1 Erwiniaceae family 1903409 93 53335 594 13042 0 11 Pantoea genus 1 4125 0 3 no rank 2630326 Pantoea sp. PSNIH2 species 1 1711 0 1484157 1484158 species Pantoea sp. PSNIH1 1 1154 0 1260 0 Pantoea sp. At-9b species 1 592316 0 2170 1 species Pantoea vagans 470934 1654067 2044 0 1 species group 2044 0 Pantoea agglomerans species 1 549 species Pantoea stewartii 1 722 0 66269 0 977 1 species Pantoea alhagi 1891675 0 1260 Pantoea ananatis species 1 553 995 0 Pantoea rwandensis species 1 1076550 155 0 Candidatus Pantoea carbekii species 1 1235990 6329 0 8 1 Erwinia genus 551 225 1619313 1295 0 1 species Erwinia gerundensis 338565 914 0 1 Erwinia tasmaniensis species 79967 670 0 1 Erwinia pyrifoliae species 0 165 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1 1922217 2622719 712 0 1 no rank 1 Erwinia sp. Ejp617 species 0 712 215689 552 species Erwinia amylovora 1 0 753 182337 0 1595 1 species Erwinia billingiae 1589 0 2 1 Buchnera genus 32199 7 0 1582 species Buchnera aphidicola 1 9 2 1 Wigglesworthia genus 0 268 1 51228 51229 1 Wigglesworthia glossinidia species 0 267 7 82986 2 1 Tatumella genus 690 0 683 0 1 Tatumella citrea species 53336 0 3049 2 genus 2100764 665913 1 Pantoea calida species 1615 0 665914 0 1434 species Pantoea gaviniae 1 2212 0 Immundisolibacterales order 1 4 1934945 35 3 1 Immundisolibacteraceae family 0 2177 64 1934946 2 genus Immundisolibacter 1 0 2113 22 1934947 Immundisolibacter cernigliae species 1 2091 0 1810504 0 83858 54 order Xanthomonadales 1 135614 761 0 15200 14 family Rhodanobacteraceae 1 1775411 271 0 1431 2 1 genus Luteibacter 242605 21 242606 1410 0 1 species Luteibacter rhizovicinus genus 1 964 0 2233801 2021234 964 0 Xanthomonadales bacterium D13 species 1 5 70411 2 1 Frateuria genus 1457 0 Frateuria aurantia species 1 0 1452 81475 323413 31 2210 0 2 1 genus Dokdonella species Dokdonella koreensis 1 2179 0 323415 121 231454 4 1 Dyella genus 0 6426 species Dyella japonica 1 0 2235 231455 Dyella thiooxydans species 1 0 2239 445710 0 1831 1 Dyella jiangningensis species 1379159 2 1 genus Rhodanobacter 2441 0 31 75309 2410 0 Rhodanobacter denitrificans species 1 666685 814 32033 family Xanthomonadaceae 1 39 67897 0 659 40323 9 genus Stenotrophomonas 1 0 23911 995085 species group 1 0 10576 1 species Stenotrophomonas maltophilia 0 10576 40324 1 species Stenotrophomonas rhizophila 1493 0 216778 196198 6469 0 4 no rank 1827305 1 Stenotrophomonas sp. MYb57 species 1644 0 0 1442 1 Stenotrophomonas sp. WZN-1 species 2005046 1793721 species Stenotrophomonas sp. KCTC 12332 1 0 1657 1726 0 species Stenotrophomonas sp. LM091 1 1904944 0 3085 Stenotrophomonas acidaminiphila species 1 128780 83617 1 species Stenotrophomonas nitritireducens 1629 0 68 172 9019 0 5 Lysobacter genus 1 84531 species Lysobacter antibioticus 1 2077 0 1 Lysobacter capsici species 0 2383 435897 69 species Lysobacter enzymogenes 1 2384 0 Lysobacter gummosus species 1 0 2003 262324 2370 7 907 0 2 genus Xylella 1 1 species Xylella fastidiosa 900 0 2371 83614 6 1454 0 2 Luteimonas genus 1 1448 0 1 species Luteimonas sp. 100111 2006110 26218 0 Xanthomonas genus 1 17 338 1396 339 0 3687 species Xanthomonas campestris 1 1 Xanthomonas vasicola species 0 965 56459 442694 species Xanthomonas perforans 1 1376 0 2519 0 species Xanthomonas translucens 1 343 56454 species Xanthomonas hortorum 1 0 1223 1 Xanthomonas alfalfae species 0 928 366650 1 species Xanthomonas vesicatoria 0 1067 56460 1985254 745 0 1 Xanthomonas phaseoli species 56458 0 2009 species Xanthomonas sacchari 1 species Xanthomonas albilineans 1 0 1013 29447 53413 Xanthomonas axonopodis species 1 760 0 456327 species Xanthomonas euvesicatoria 1 0 1130 species group 2 0 4573 643453 366648 0 1329 1 species Xanthomonas fuscans 346 Xanthomonas citri species 1 0 3244 347 1 Xanthomonas oryzae species 2091 0 48664 736 0 species Xanthomonas fragariae 1 83618 140 5574 0 3 1 Pseudoxanthomonas genus 1 species Pseudoxanthomonas spadix 0 1533 415229 1 Pseudoxanthomonas suwonensis species 3901 0 314722 135623 47 0 28570 43 order Vibrionales 1 0 28523 42 Vibrionaceae family 1 641 179 657 17 0 2400 genus Photobacterium 1 4 0 782 Photobacterium damselae species 1 38293 1295392 1 Photobacterium gaetbulicola species 0 1042 559 0 1 Photobacterium profundum species 74109 427 0 1 genus 2042066 0 427 Paraphotobacterium marinum species 1 1755811 439 662 30 genus Vibrio 1 23408 0 676 0 1221 1 species Vibrio fluvialis 674 1 species Vibrio mimicus 1246 0 672 species Vibrio vulnificus 1 1895 0 Vibrio furnissii species 1 0 966 29494 1 species Vibrio anguillarum 0 809 55601 28173 1 Vibrio nigripulchritudo species 0 758 687 1 Vibrio gazogenes species 551 0 1891919 species group 1 344 0 29498 Vibrio tubiashii species 1 0 344 no rank 2 1182 0 2614977 0 578 1 species Vibrio sp. EJY3 1116375 2014742 0 604 1 species Vibrio sp. 2521-89 1534743 466 0 1 species Vibrio hyugaensis Vibrio qinghaiensis species 1 470 0 2025808 212663 349 0 Vibrio tasmaniensis species 1 45658 0 544 Vibrio scophthalmi species 1 553239 Vibrio breoganii species 1 452 0 666 species Vibrio cholerae 1 1039 0 1435069 species Vibrio tritonius 1 0 636 190893 0 1129 1 species Vibrio coralliilyticus 52443 Vibrio tapetis species 1 0 491 10 species group 8421 0 717610 680 0 1111 Vibrio campbellii species 1 670 0 1347 1 Vibrio parahaemolyticus species 696485 species Vibrio owensii 1 0 794 0 355 1 Vibrio jasicida species 766224 691 0 999 species Vibrio natriegens 1 1471 0 species Vibrio alginolyticus 1 663 Vibrio rotiferianus species 1 0 266 190895 669 0 765 species Vibrio harveyi 1 2315253 species subgroup 2 1313 0 1 Vibrio antiquarius species 446 0 150340 50719 1 species Vibrio diabolicus 867 0 0 568 1 Grimontia genus 2 246861 19 673 549 0 Grimontia hollisae species 1 15 511678 4 Aliivibrio genus 1 1541 0 Aliivibrio fischeri species 1 0 551 668 80852 0 532 1 species Aliivibrio wodanis 443 0 Aliivibrio salmonicida species 1 40269 1 order Acidiferrobacterales 6 3078 0 71 1692040 1 family Acidiferrobacteraceae 5 0 3007 75 1692041 15 1692042 2 1 Sulfurifustis genus 0 1490 1475 0 Sulfurifustis variabilis species 1 1675686 1744881 55 0 1442 1 Sulfuricaulis genus 2 1620215 1 species Sulfuricaulis limicola 0 1387 0 4411 13 no rank 118884 1608298 11 0 1065 2 Thiolapillus genus 1 Thiolapillus brandeum species 1 0 1054 1076588 349742 5 0 1015 1 Sedimenticola genus 2 1543721 Sedimenticola thiotaurini species 1 1010 0 0 365 clade 1 198346 186490 species Candidatus Baumannia cicadellinicola 1 0 365 0 768 3 clade 32036 genus 1 267 0 1541743 Candidatus Ruthia magnifica species 1 267 0 386487 species Calyptogena okutanii thioautotrophic gill symbiont 1 0 226 410330 0 275 species Bathymodiolus septemdierum thioautotrophic gill symbiont 1 113267 0 430 3 Candidatus Thioglobus genus 1 655184 2 1705394 234 0 1 Candidatus Thioglobus autotrophicus species 1427364 194 0 1 Candidatus Thioglobus singularis species 4 1524249 genus Pseudohongiella 1 2 768 0 Pseudohongiella spirulinae species 1 764 0 1249552 1027 0 4 1 order Orbales 1240482 2 3 1 Orbaceae family 1025 0 10 1240483 0 482 1 genus 1335631 482 0 1 species Frischella perrara 1267021 533 0 1 genus 1193503 1196095 species Gilliamella apicola 1 0 533 31 1 order Pasteurellales 0 17787 20 135625 712 709 0 17767 1 family Pasteurellaceae 30 1 Bibersteinia genus 2 1238 0 3 476528 47735 Bibersteinia trehalosi species 1 1235 0 2094023 genus 1 938 0 738 species Glaesserella parasuis 1 938 0 1 genus Haemophilus 6 5128 0 13 724 Haemophilus influenzae species 1 1312 0 727 249188 521 0 Haemophilus pittmaniae species 1 0 334 1 no rank 2609962 712310 1 species Haemophilus sp. oral taxon 036 334 0 729 2406 0 Haemophilus parainfluenzae species 1 1 [Haemophilus] ducreyi species 542 0 730 genus Gallibacterium 1 2 590 0 1 155493 0 589 Gallibacterium anatis species 1 750 745 5 1856 0 3 1 genus Pasteurella 747 0 1313 species Pasteurella multocida 1 754 0 538 Pasteurella dagmatis species 1 713 15 2460 0 1 genus Actinobacillus 5 0 518 1 Actinobacillus equuli species 718 715 Actinobacillus pleuropneumoniae species 1 0 828 67854 Actinobacillus succinogenes species 1 0 602 1 species Actinobacillus suis 0 497 716 0 652 genus Basfia 1 2 697331 3 1 [Mannheimia] succiniciproducens species 0 649 157673 214906 1 genus 0 514 731 1 species Histophilus somni 0 514 0 1809 3 Aggregatibacter genus 1 416916 22 935 0 Aggregatibacter actinomycetemcomitans species 1 714 0 852 species Aggregatibacter aphrophilus 1 732 15 75984 4 genus Mannheimia 1 0 1873 no rank 1 401 0 2645054 1432056 0 401 Mannheimia sp. USDA-ARS-USMARC-1261 species 1 1 Mannheimia haemolytica species 0 677 75985 85404 780 0 Mannheimia varigena species 1 0 44888 1 order Alteromonadales 106 135622 253 0 16654 30 1 Alteromonadaceae family 72275 116 Alteromonas genus 1 10 0 4594 36 226 Alteromonas macleodii species 1 0 1059 28108 2614992 3 no rank 992 0 Alteromonas sp. MB-3u-76 species 1 0 322 2058133 0 327 1 Alteromonas sp. Mac1 species 1777491 343 0 Alteromonas sp. RW2A1 species 1 1917158 287094 1 Alteromonas addita species 350 0 262 0 1 species Alteromonas naphthalenivorans 715451 1 species Alteromonas stellipolaris 0 532 233316 1 species Alteromonas mediterranea 774 0 314275 589873 Alteromonas australica species 1 0 589 10 1 genus Marinobacter 9047 0 134 2742 2743 0 1578 Marinobacter hydrocarbonoclasticus species 1 1420916 1 species Marinobacter similis 0 874 1033846 0 969 1 Marinobacter adhaerens species 1874317 1 Marinobacter salinus species 793 0 83889 3 no rank 3186 0 species Marinobacter sp. BSs20148 1 0 623 490759 0 1092 1 Marinobacter sp. CP1 species 1671721 1749259 species Marinobacter sp. LQ44 1 1471 0 0 465 1 Marinobacter psychrophilus species 330734 1420917 Marinobacter salarius species 1 0 1048 89404 6 0 861 3 genus Glaciecola 1 1 no rank 367 0 2618684 983545 0 367 1 Glaciecola sp. 4H-3-7+YE-5 species 488 0 1 species Glaciecola nitratireducens 300231 554 0 2 Paraglaciecola genus 1 1621534 3 species Paraglaciecola psychrophila 1 551 0 326544 2 1 genus Agarivorans 498 0 10 261825 680279 488 0 1 Agarivorans gilvus species 984 0 genus Lacimicrobium 1 2 1751872 5 1526571 1 Lacimicrobium alkaliphilum species 0 979 family Idiomarinaceae 1 6 0 1290 4 267893 135575 12 0 1286 1 genus Idiomarina 5 135577 1 Idiomarina loihiensis species 0 287 1096243 Idiomarina piscisalsi species 1 266 0 0 721 2 no rank 2614829 2055892 378 0 species Idiomarina sp. X4 1 2100422 343 0 1 species Idiomarina sp. OT37-5b 25 1 Pseudoalteromonadaceae family 9341 0 29 267888 240 53246 24 genus Pseudoalteromonas 1 0 9312 1 species Pseudoalteromonas piratica 481 0 1348114 161398 0 380 1 Pseudoalteromonas phenolica species 689 0 1 species Pseudoalteromonas spongiae 298657 288 species Pseudoalteromonas atlantica 1 0 658 1 Pseudoalteromonas translucida species 0 254 166935 43662 species Pseudoalteromonas piscicida 1 0 417 1 species Pseudoalteromonas marina 284 0 267375 28107 1 Pseudoalteromonas espejiana species 0 281 species Pseudoalteromonas nigrifaciens 1 307 0 28109 314281 0 430 Pseudoalteromonas tunicata species 1 0 316 1 Pseudoalteromonas arctica species 394751 255 0 species Pseudoalteromonas issachenkonii 1 152297 247523 0 620 1 species Pseudoalteromonas aliena 43659 1 species Pseudoalteromonas tetraodonis 270 0 0 1959 5 no rank 194690 234831 Pseudoalteromonas sp. SM9913 species 1 220 0 478 0 species Pseudoalteromonas sp. Bsw20308 1 283699 1761891 1 Pseudoalteromonas sp. 13-15 species 0 269 0 434 species Pseudoalteromonas sp. NC201 1 1514074 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 0 558 1720343 Pseudoalteromonas luteoviolacea species 1 0 377 43657 1 species Pseudoalteromonas rubra 465 0 43658 228 Pseudoalteromonas haloplanktis species 1 280 0 349 0 1 Pseudoalteromonas agarivorans species 176102 9 267889 9 family Colwelliaceae 1 3054 0 407 0 genus Thalassotalea 1 2 1518149 11 1 Thalassotalea crassostreae species 396 0 1763536 0 2638 1 Colwellia genus 6 28228 20 no rank 3 1575 0 196834 58049 1 species Colwellia sp. MT41 0 637 1816219 0 484 1 species Colwellia sp. PAMC 21821 1816218 0 454 1 Colwellia sp. PAMC 20917 species 1 species Colwellia psychrerythraea 565 0 28229 1967665 478 0 1 species Colwellia beringensis Ferrimonadaceae family 1 3 1757 0 10 267892 0 1747 Ferrimonas genus 1 2 44011 40 44012 species Ferrimonas balearica 1 1707 0 1 Psychromonadaceae family 4 978 0 1 267894 67572 5 0 977 3 Psychromonas genus 1 2614957 1 no rank 456 0 314282 0 456 1 Psychromonas sp. CNPT3 species Psychromonas ingrahamii species 1 0 516 357794 11051 0 25 1 Shewanellaceae family 267890 25 0 11026 genus Shewanella 1 24 22 154 462 0 1 Shewanella marisflavi species 260364 271098 species Shewanella halifaxensis 1 459 0 192073 0 241 species Shewanella denitrificans 1 0 1867 6 no rank 196818 283 0 1 species Shewanella sp. W3-18-1 351745 60481 1 Shewanella sp. MR-7 species 0 319 2029986 0 276 Shewanella sp. WE21 species 1 1 Shewanella sp. MR-4 species 0 317 60480 2059264 0 283 1 species Shewanella sp. Pdp11 94122 0 389 1 species Shewanella sp. ANA-3 1 species Shewanella japonica 0 397 93973 0 322 1 species Shewanella pealeana 70864 1 Shewanella bicestrii species 317 0 2018305 56812 1 Shewanella frigidimarina species 0 320 359303 0 861 species Shewanella loihica 1 225848 566 0 species Shewanella psychrophila 1 531 0 1 species Shewanella woodyi 60961 species Shewanella baltica 1 1170 0 62322 271097 0 530 Shewanella sediminis species 1 24 1 Shewanella putrefaciens species 0 375 404011 427 0 1 species Shewanella piezotolerans 0 423 1 species Shewanella oneidensis 70863 60217 Shewanella violacea species 1 478 0 1 species Shewanella amazonensis 0 1126 60478 2 267891 1 family Moritellaceae 3 510 0 Moritella genus 1 2 508 0 7 58050 80854 0 501 1 species Moritella viscosa 984 72274 129 1 order Pseudomonadales 206817 0 58 468 42 1 family Moraxellaceae 19020 0 13915 0 25 1 genus Acinetobacter 469 112 species group 5 0 5106 909768 1785128 300 0 1 Acinetobacter lactucae species 0 555 species Acinetobacter nosocomialis 1 106654 0 1567 Acinetobacter pittii species 1 48296 0 800 Acinetobacter calcoaceticus species 1 471 1884 0 1 species Acinetobacter baumannii 470 1789224 1 species Acinetobacter larvae 423 0 40214 species Acinetobacter johnsonii 1 337 0 1148157 0 439 Acinetobacter oleivorans species 1 0 592 1 Acinetobacter indicus species 756892 493 0 1 species Acinetobacter radioresistens 40216 Acinetobacter equi species 1 544 0 1324350 Acinetobacter haemolyticus species 1 0 572 29430 202950 0 535 species 1 1 strain Acinetobacter sp. ADP1 535 0 62977 108981 638 0 1 Acinetobacter schindleri species 487316 322 0 Acinetobacter soli species 1 40215 species Acinetobacter junii 1 598 0 2608 0 no rank 7 196816 1608473 371 0 1 Acinetobacter sp. NCu2D-2 species 1407071 species Acinetobacter sp. TGL-Y2 1 0 290 1 species Acinetobacter sp. TTH0-4 331 0 1646498 1758189 species Acinetobacter sp. ACNIH2 1 342 0 1636603 0 462 Acinetobacter sp. ACNIH1 species 1 species Acinetobacter sp. LoGeW2-3 1 471 0 1808001 2079596 species Acinetobacter sp. SWBY1 1 0 341 Acinetobacter bereziniae species 1 0 596 106648 28 497 11 1 genus Psychrobacter 3056 0 Psychrobacter alimentarius species 1 0 311 261164 0 327 Psychrobacter arcticus species 1 334543 1905 0 6 no rank 196806 0 366 Psychrobacter sp. P11G5 species 1 1699624 338 0 1 species Psychrobacter sp. PRwf-1 349106 1720344 0 341 Psychrobacter sp. AntiMn-1 species 1 1699622 0 325 1 Psychrobacter sp. P2G3 species 571800 species Psychrobacter sp. G 1 261 0 1028416 Psychrobacter sp. DAB_AL43B species 1 274 0 330922 277 0 1 species Psychrobacter cryohalolentis 45610 208 0 species Psychrobacter urativorans 1 genus Moraxella 1 5 1991 0 17 475 species Moraxella osloensis 1 0 677 34062 543 0 species Moraxella bovoculi 1 386891 1 species Moraxella catarrhalis 0 380 480 Moraxella ovis species 1 374 0 29433 135621 1239 0 186813 1 Pseudomonadaceae family 86 286 6296 0 179659 genus Pseudomonas 1 80 26653 0 6 species group 136845 0 1726 Pseudomonas oryzihabitans species 1 47885 303 1 species Pseudomonas putida 0 14880 76759 1 species Pseudomonas monteilii 3403 0 47880 Pseudomonas fulva species 1 0 2647 78327 1 species Pseudomonas mosselii 2919 0 0 1078 1 species Pseudomonas plecoglossicida 70775 Pseudomonas entomophila species 1 1294 0 312306 216142 1 Pseudomonas rhizosphaerae species 1258 0 0 1595 1 Pseudomonas alcaliphila species 101564 244566 species Pseudomonas lurida 1 804 0 23160 0 9 species group 136843 1 Pseudomonas trivialis species 0 1090 200450 76758 1196 0 1 species Pseudomonas orientalis 47879 997 0 1 Pseudomonas corrugata species species Pseudomonas veronii 1 0 1321 76761 294 Pseudomonas fluorescens species 1 0 12489 47878 1831 0 Pseudomonas azotoformans species 1 380021 2006 0 species Pseudomonas protegens 1 200451 1 species Pseudomonas poae 1106 0 1124 0 Pseudomonas mandelii species 1 75612 species group 2 0 8387 136842 296 species Pseudomonas fragi 1 1719 0 587753 Pseudomonas chlororaphis species 1 0 6668 30 no rank 37000 0 196821 0 980 Pseudomonas sp. LG1D9 species 1 2083054 Pseudomonas sp. LPH1 species 1 1610 0 1898684 2083052 Pseudomonas sp. SWI36 species 1 0 1048 1028989 1 species Pseudomonas sp. StFLB209 1656 0 0 1429 Pseudomonas sp. CCOS 191 species 1 1649877 1 Pseudomonas sp. St29 species 1562 0 1500687 1415630 0 1009 1 Pseudomonas sp. TKP species 2049589 species Pseudomonas sp. HLS-6 1 919 0 1030 0 Pseudomonas sp. S-6-2 species 1 1931241 1259844 Pseudomonas sp. FGI182 species 1 1342 0 2083051 0 830 Pseudomonas sp. SWI6 species 1 1534110 Pseudomonas sp. DR 5-09 species 1 1082 0 2018067 0 1021 1 Pseudomonas sp. FDAARGOS_380 species 1207075 0 962 species Pseudomonas sp. UW4 1 1827300 Pseudomonas sp. MYb193 species 1 909 0 0 1328 1 species Pseudomonas sp. NC02 2067572 69328 1007 0 1 Pseudomonas sp. VLB120 species 0 1717 1 Pseudomonas sp. URMO17WK12:I11 species 1283291 2083055 0 1297 Pseudomonas sp. LH1G9 species 1 1930532 1 species Pseudomonas sp. CC6-YY-74 1116 0 1611770 1 species Pseudomonas sp. MRSN12121 1497 0 Pseudomonas sp. ATCC 13867 species 1 2209 0 1294143 1577 0 1 Pseudomonas sp. Os17 species 1500686 1981174 1 species Pseudomonas sp. M30-35 0 608 1338689 0 1127 species Pseudomonas sp. JY-Q 1 1636610 species Pseudomonas sp. PONIH3 1 1411 0 0 1022 Pseudomonas sp. SWI44 species 1 2083053 1856685 0 1705 Pseudomonas sp. TCU-HL1 species 1 1 species Pseudomonas sp. GR 6-02 937 0 1659194 2069256 0 1053 1 Pseudomonas sp. XWY-1 species 104087 species Pseudomonas frederiksbergensis 1 0 2313 157782 species Pseudomonas parafulva 1 2219 0 0 1328 1 species Pseudomonas cremoricolorata 157783 1788301 1 Pseudomonas versuta species 0 748 1583341 species Pseudomonas cerasi 1 0 1222 2110 0 1 Pseudomonas koreensis species 198620 136846 11799 0 2 species group 74829 0 1428 1 species Pseudomonas balearica 578833 10371 0 species subgroup 1 316 Pseudomonas stutzeri species 1 10371 0 237610 1 Pseudomonas psychrotolerans species 0 1739 237609 1075 0 Pseudomonas alkylphenolica species 1 65741 1872 0 1 species Pseudomonas knackmussii 930166 1 species Pseudomonas brassicacearum 0 2855 219572 1 species Pseudomonas antarctica 0 915 0 16895 8 species group 136849 36746 0 1087 1 species Pseudomonas cichorii 1 species subgroup 0 7196 251695 1 Pseudomonas syringae species 7196 0 317 1 species Pseudomonas viridiflava 0 1283 33069 251698 0 3267 2 species subgroup 0 1652 Pseudomonas amygdali species 1 47877 29438 1615 0 1 Pseudomonas savastanoi species 2775504 841 0 1 no rank species Pseudomonas sp. Lz4W 1 841 0 1206777 251701 0 2091 1 Pseudomonas syringae group genomosp. 3 species 46257 0 1130 1 Pseudomonas avellanae species species group 6 0 25347 136841 287 1 species Pseudomonas aeruginosa 7794 0 53412 species Pseudomonas resinovorans 1 0 2030 53408 4448 0 species Pseudomonas citronellolis 1 species subgroup 1 2324 0 1232139 1149133 2324 0 1 species Pseudomonas furukawaii 43263 species Pseudomonas alcaligenes 1 1985 0 300 species Pseudomonas mendocina 1 0 6766 1853130 0 775 1 species Pseudomonas silesiensis 1849530 1 0 367 2 genus Oblitimonas 1 species Oblitimonas alkaliphila 1 0 366 1697053 0 5548 3 subfamily 351 5548 0 1 Azotobacter genus 3 352 54 353 3286 0 species Azotobacter chroococcum 1 354 1 Azotobacter vinelandii species 0 2208 305 135624 1 Aeromonadales order 29 0 48272 476 84642 family Aeromonadaceae 1 28 0 47967 129577 26 0 2497 1 Oceanimonas genus 2 1 no rank 2471 0 2636315 511062 0 2471 1 Oceanimonas sp. GK1 species 0 793 3 genus Oceanisphaera 1 225143 1 0 572 species Oceanisphaera profunda 1 1416627 1903694 0 220 1 species Oceanisphaera sp. AMac2203 40031 0 18 1 Aeromonas genus 642 2975 652 1 Aeromonas schubertii species 2085 0 0 8943 1 species Aeromonas hydrophila 644 1221 0 species Aeromonas caviae 1 648 645 1 Aeromonas salmonicida species 0 3039 1 Aeromonas rivipollensis species 0 1758 948519 1783 0 Aeromonas dhakensis species 1 196024 654 species Aeromonas veronii 1 3904 0 8 no rank 11067 0 257493 1758179 0 1577 1 species Aeromonas sp. ASNIH5 1920107 1060 0 1 species Aeromonas sp. ASNIH7 2033033 Aeromonas sp. CU5 species 1 0 1382 1636606 0 1133 1 Aeromonas sp. ASNIH1 species 1 species Aeromonas sp. CA23 1792 0 2033032 1636608 1338 0 1 Aeromonas sp. ASNIH3 species 1132 0 species Aeromonas sp. ASNIH2 1 1636607 1636609 species Aeromonas sp. ASNIH4 1 0 1653 558964 1 Aeromonas aquatica species 1724 0 1532 0 Aeromonas media species 1 651 26 347533 genus Zobellella 1 2 0 3043 3017 0 1 species Zobellella denitrificans 347534 2 1 Tolumonas genus 0 1127 4 43947 43948 species Tolumonas auensis 1 0 1123 0 5966 Legionellales order 1 18 118969 12 5236 0 14 family Legionellaceae 1 444 29 445 62 4931 0 1 Legionella genus 12 1 species Legionella hackeliae 499 0 449 28087 266 0 species Legionella sainthelensi 1 302 0 species Legionella longbeachae 1 450 0 1767 1 Legionella pneumophila species 446 1 Legionella waltersii species 393 0 66969 96230 species Legionella fallonii 1 0 379 195 0 1 Legionella lansingensis species 45067 1867846 1 species Legionella clemsonensis 0 279 452 Legionella spiritensis species 1 332 0 1 Legionella oakridgensis species 0 325 29423 132 0 Legionella endosymbiont of Polyplax serrata species 1 2005262 465 1 genus 0 276 0 276 Tatlockia micdadei species 1 451 3 family 0 718 118968 134284 1 no rank 0 149 1592897 1 species Coxiella-like endosymbiont 0 149 776 2 genus 0 569 1 no rank 0 125 2676648 0 125 1 species Coxiella endosymbiont of Amblyomma americanum 325775 species Coxiella burnetii 1 444 0 777 0 34443 52 Chromatiales order 1 135613 502 family Granulosicoccaceae 1 3 0 1013 2 449719 3 437504 1 Granulosicoccus genus 2 0 1011 0 1008 1 species Granulosicoccus antarcticus 437505 0 14217 18 family Ectothiorhodospiraceae 1 72276 181 15 85108 1 genus Halorhodospira 2 0 1553 0 1538 Halorhodospira halophila species 1 1053 979 0 Acidihalobacter genus 1 2 1765964 11 160660 species Acidihalobacter prosperus 1 968 0 7 1051 1 genus Ectothiorhodospira 2 1542 0 1 no rank 0 1535 2684909 1442136 Ectothiorhodospira sp. BSL-9 species 1 0 1535 0 1154 1 Spiribacter genus 3 1335745 48 1335746 Spiribacter salinus species 1 0 415 1335757 1 species Spiribacter curvatus 691 0 0 1707 Alkalilimnicola genus 1 2 133193 41 Alkalilimnicola ehrlichii species 1 1666 0 351052 133 106633 6 genus Thioalkalivibrio 1 0 7101 Thioalkalivibrio sulfidiphilus species 1 0 2428 1033854 108010 964 0 1 species Thioalkalivibrio paradoxus 2621013 1 no rank 0 1173 1173 0 1 Thioalkalivibrio sp. K90mix species 396595 186931 0 1036 species Thioalkalivibrio nitratireducens 1 106634 0 1367 species Thioalkalivibrio versutus 1 16 255526 4 Halothiobacillaceae family 1 1337 0 0 1321 1 genus Halothiobacillus 3 109262 51 927 1 species Halothiobacillus neapolitanus 0 505 765 0 no rank 1 2636392 1860122 species Halothiobacillus sp. LS2 1 0 765 0 771 family Woeseiaceae 1 3 1738654 2 1738655 7 769 0 1 Woeseia genus 2 0 762 1 species Woeseia oceani 1548547 2123 0 no rank 2 451214 2 Thiohalobacter genus 1 2123 0 42 1273155 1 Thiohalobacter thiocyanaticus species 2081 0 585455 166 1046 18 1 Chromatiaceae family 13099 0 1 Thiodictyon genus 2 0 2704 13 53392 0 2691 1 Candidatus Thiodictyon syntrophicum species 1166950 9 1980513 2 Candidatus Nitrosoglobus genus 1 0 156 1 Candidatus Nitrosoglobus terrae species 0 147 1630141 156885 38 0 1505 1 Thioflavicoccus genus 2 1467 0 1 species Thioflavicoccus mobilis 80679 1227 9 1227 0 1 genus Nitrosococcus 4 0 428 1 Nitrosococcus halophilus species 133539 species Nitrosococcus oceani 1 0 335 1229 species Nitrosococcus watsonii 1 0 455 473531 82569 0 1464 no rank 1 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1 0 1464 53 85076 Marichromatium genus 1 2 0 1941 37487 1 Marichromatium purpuratum species 1888 0 85072 4 2335 0 2 1 Allochromatium genus 1 Allochromatium vinosum species 2331 0 1049 0 1601 2 1 Thiocystis genus 13724 38 1563 0 species Thiocystis violascens 1 73141 1381 0 1 Wenzhouxiangellaceae family 3 1676141 14 1676142 29 1367 0 2 1 genus Wenzhouxiangella 1 species Wenzhouxiangella marina 0 1338 1579979 order 3 0 355 135615 3 1 family Cardiobacteriaceae 0 355 1 868 3 869 2 Dichelobacter genus 1 354 0 870 0 351 1 Dichelobacter nodosus species 0 11515 Cellvibrionales order 1 29 1706369 108 1706373 13 0 3063 family Microbulbiferaceae 1 5 3050 0 4 genus Microbulbifer 1 48073 24 0 989 Microbulbifer agarilyticus species 1 260552 1769779 1081 0 1 Microbulbifer aggregans species 252514 Microbulbifer thermotolerans species 1 956 0 0 1668 7 1 family Spongiibacteraceae 1706375 27 2 1084558 genus Oceanicoccus 1 2 613 0 716816 611 0 1 Oceanicoccus sagamiensis species 2 630749 2 Spongiibacter genus 1 0 442 0 440 1 no rank 2631504 0 440 species Spongiibacter sp. IMCC21906 1 1620392 3 1434050 1 Zhongshania genus 2 586 0 1470434 Zhongshania aliphaticivorans species 1 583 0 0 1532 4 Halieaceae family 1 1706372 11 1 genus Halioglobus 3 1521 0 12 1217416 930805 species Halioglobus japonicus 1 720 0 930806 789 0 1 Halioglobus pacificus species 24 1706371 1 family Cellvibrionaceae 12 0 5144 2425 6 0 512 2 1 genus Teredinibacter species Teredinibacter turnerae 1 506 0 2426 Cellvibrio genus 1 4 2603 0 25 10 2 no rank 1649 0 2624793 0 621 species Cellvibrio sp. PSBB023 1 1945512 Cellvibrio sp. PSBB006 species 1 0 1028 1987723 1 species Cellvibrio japonicus 929 0 155077 2 1 genus Simiduia 996 0 11 447467 985 0 1 species Simiduia agarivorans 447471 2036021 478 0 1 genus 0 478 1 species Agarilytica rhodophyticola 1737490 6 316625 2 1 Saccharophagus genus 531 0 525 0 1 Saccharophagus degradans species 86304 68525 0 258707 subphylum 201 0 63908 72 Epsilonproteobacteria class 1 29547 292 2 235899 5 Nautiliales order 1 1224 0 394 0 family 1 2795691 394 0 genus 1 269258 2624044 0 394 no rank 1 387092 1 Nitratiruptor sp. SB155-2 species 394 0 224467 6 828 0 3 Nautiliaceae family 1 191291 23 822 0 Nautilia genus 1 2 0 799 1 Nautilia profundicola species 244787 66 1 Campylobacterales order 62392 0 2314 213849 0 50614 family Campylobacteraceae 1 41 72294 4243 0 39435 genus Campylobacter 1 26 194 674 1 species Campylobacter ureolyticus 431 0 827 199 0 664 Campylobacter concisus species 1 824 1 Campylobacter gracilis species 0 742 413 0 Campylobacter cuniculorum species 1 374106 1244531 346 0 species Campylobacter iguaniorum 1 201 1 species Campylobacter lari 0 1067 488546 1 Campylobacter peloridis species 332 0 497724 species Campylobacter subantarcticus 1 0 429 7196 0 species Campylobacter jejuni 1 197 195 species Campylobacter coli 1 0 19418 198 515 0 1 Campylobacter hyointestinalis species 722 0 Campylobacter sputorum species 1 206 1031542 439 0 Campylobacter volucris species 1 Campylobacter avium species 1 0 227 522485 1 Campylobacter fetus species 0 1071 196 28898 289 0 Campylobacter helveticus species 1 75658 0 1194 species Campylobacter lanienae 1 260714 0 354 1 Campylobacter insulaenigrae species species Campylobacter pinnipediorum 1 0 792 1965231 76517 1 Campylobacter hominis species 0 329 0 1354 no rank 4 2593542 0 255 1 Campylobacter sp. RM6137 species 1660073 1 Campylobacter sp. RM12175 species 322 0 1660076 Campylobacter sp. RM16704 species 1 0 426 1500960 1 Campylobacter sp. RM8964 species 351 0 1660074 200 437 0 species Campylobacter curvus 1 2321108 3552 0 5 no rank 2321187 genus 1 767 0 767 0 species Arcobacter sp. LPB0137 1 1850254 3 genus Arcobacter 1 1715 0 17 28196 28199 693 0 Arcobacter nitrofigilis species 1 28197 1005 0 1 species Arcobacter butzleri 2321207 no rank 1 1070 0 944547 1 species Arcobacter sp. L 0 1070 60 57665 genus Sulfurospirillum 1 9 0 3384 366522 species Sulfurospirillum cavolei 1 376 0 194424 0 398 1 Sulfurospirillum halorespirans species 66821 0 395 1 Sulfurospirillum multivorans species 65553 0 256 1 species Sulfurospirillum deleyianum species Sulfurospirillum barnesii 1 0 415 44674 no rank 3 1484 0 2618290 0 517 species Sulfurospirillum sp. UCH001 1 1581011 475 0 species Sulfurospirillum sp. SL2-1 1 1986224 Sulfurospirillum sp. JPD-1 species 1 492 0 220622 72293 36 0 5233 15 family Helicobacteraceae 1 843 3 0 350 2 genus Wolinella 1 species Wolinella succinogenes 1 0 347 844 genus Helicobacter 1 12 0 4847 3 209 32025 Helicobacter hepaticus species 1 0 283 0 298 1 species Helicobacter himalayensis 1591088 1 Helicobacter cetorum species 501 0 138563 37372 415 0 Helicobacter bilis species 1 1 species Helicobacter acinonychis 0 233 212 2593540 294 0 no rank 1 Helicobacter sp. MIT 01-6242 species 1 294 0 222136 76936 1 Helicobacter typhlonius species 302 0 213 0 320 1 species Helicobacter cinaedi Helicobacter pylori species 1 0 1832 210 217 1 species Helicobacter mustelae 187 0 0 179 1 Helicobacter felis species 214 2771472 family 5 0 2780 7 269260 1 Nitratifractor genus 2 0 1140 269261 0 1133 1 Nitratifractor salsuginis species 24 265570 3 genus Sulfurovum 1 0 1640 2646778 no rank 1 0 877 877 0 Sulfurovum sp. NBC37-1 species 1 387093 Sulfurovum lithotrophicum species 1 0 739 206403 1451 0 family 4 2771471 genus 2 0 979 202746 1 species Sulfurimonas autotrophica 581 0 202747 Sulfurimonas denitrificans species 1 0 398 39766 2 286130 1 Sulfuricurvum genus 2 0 472 148813 species Sulfuricurvum kujiense 1 470 0 0 194799 129 1 Deltaproteobacteria class 28221 483 994 29 38 order Myxococcales 1 72549 0 80812 13516 0 suborder 8 2877 0 family Sandaracinaceae 1 3 1055686 25 24 1055688 2 Sandaracinus genus 1 0 2852 927083 0 2828 Sandaracinus amylolyticus species 1 10639 0 family Polyangiaceae 1 5 49 71 50 17 0 2252 Chondromyces genus 1 2 2235 0 species Chondromyces crocatus 1 52 76 39643 2 1 Sorangium genus 0 8316 0 8240 Sorangium cellulosum species 1 56 80811 26 suborder 54468 0 1 family Myxococcaceae 9 0 25755 176 31 216 83461 1 Corallococcus genus 3 8538 0 species Corallococcus coralloides 1 4592 0 184914 1 species Myxococcus macrosporus 3730 0 35 0 17041 5 Myxococcus genus 1 32 746 3127 0 1 Myxococcus xanthus species 34 3248 0 species Myxococcus hansupus 1 1297742 7012 0 1 species Myxococcus fulvus 33 Myxococcus stipitatus species 1 0 2908 83455 5 Anaeromyxobacteraceae family 1 0 11362 147 1524215 161492 336 0 11215 4 1 genus Anaeromyxobacter 2620896 5939 0 no rank 2 404589 0 2741 1 Anaeromyxobacter sp. Fw109-5 species 447217 Anaeromyxobacter sp. K species 1 0 3198 161493 Anaeromyxobacter dehalogenans species 1 0 4940 family Archangiaceae 1 9 0 15149 363 39 47 27 4205 0 2 Archangium genus 1 species Archangium gephyra 1 0 4178 48 56 42 2 1 Cystobacter genus 0 3835 43 Cystobacter fuscus species 1 3779 0 18 40 2 Stigmatella genus 1 0 2756 1 Stigmatella aurantiaca species 2738 0 41 44 15 3990 0 1 genus Melittangium 2 0 3975 1 species Melittangium boletus 83453 49 1524213 3 Vulgatibacteraceae family 1 2202 0 1524214 60 2153 0 2 Vulgatibacter genus 1 1391653 1 species Vulgatibacter incomptus 0 2093 0 3571 suborder 3 224462 family Kofleriaceae 1 3 3571 0 18 224464 3553 0 2 1 genus Haliangium 162027 57 80816 0 3496 1 species Haliangium ochraceum 61044 0 1 order Desulfovibrionales 26 213115 559 54650 0 18 1 Desulfovibrionaceae family 194924 387 105 2035811 4 genus Pseudodesulfovibrio 1 0 9237 0 4248 1 species Pseudodesulfovibrio indicus 1716143 species Pseudodesulfovibrio profundus 1 1615 0 57320 182210 1 Pseudodesulfovibrio aespoeensis species 0 3269 41707 16 0 992 2 1 Lawsonia genus 29546 species Lawsonia intracellularis 1 0 976 1413 0 genus 1 2794998 880 1 species Desulfovibrio salexigens 0 1413 2582840 1 genus 2763 0 2763 0 1 Desulfovibrio africanus species 873 872 344 0 39858 genus Desulfovibrio 1 9 0 2319 1 Desulfovibrio alaskensis species 58180 184917 Desulfovibrio magneticus species 1 0 3991 901 Desulfovibrio piger species 1 8427 0 1 no rank 0 2405 2593640 631220 2405 0 species Desulfovibrio sp. G11 1 1725232 991 0 Candidatus Desulfovibrio trichonymphae species 1 1 species Desulfovibrio vulgaris 0 9827 881 0 6472 Desulfovibrio desulfuricans species 1 876 44742 0 5082 1 species Desulfovibrio fairfieldensis 971 0 3 family Desulfohalobiaceae 1 213117 7 2 1 genus Desulfohalobium 964 0 5 45662 0 959 species Desulfohalobium retbaense 1 45663 84 213116 1 Desulfomicrobiaceae family 4 0 4864 898 25 4780 0 3 1 genus Desulfomicrobium 0 2539 species Desulfomicrobium baculatum 1 899 132132 2216 0 1 species Desulfomicrobium orale 31 453227 order Desulfarculales 1 4 3109 0 3078 0 Desulfarculaceae family 1 3 453228 27 2 genus Desulfarculus 1 3051 0 30 453229 3021 0 species Desulfarculus baarsii 1 453230 213118 111 14548 0 20 1 order Desulfobacterales 213121 30 6928 0 Desulfobulbaceae family 1 9 893 22 0 2730 2 Desulfobulbus genus 1 Desulfobulbus sp. ORNL species 1 2708 0 1986146 1 Desulfurivibrio genus 2 2264 0 34 427922 species Desulfurivibrio alkaliphilus 1 2230 0 427923 2 1 Desulfotalea genus 923 0 2 109168 1 Desulfotalea psychrophila species 921 0 84980 0 981 2 Desulfocapsa genus 1 53318 1 species Desulfocapsa sulfexigens 1 980 0 65555 51 213119 1 Desulfobacteraceae family 10 0 7509 5 2295 2 1 Desulfobacterium genus 1372 0 0 1367 Desulfobacterium autotrophicum species 1 2296 31 896 3 1 Desulfococcus genus 0 3352 0 1429 species Desulfococcus multivorans 1 897 181663 0 1892 1 species Desulfococcus oleovorans 2 28222 2 1 Desulfobacula genus 1154 0 28223 1152 0 species Desulfobacula toluolica 1 218207 6 0 1580 2 Desulfatibacillum genus 1 259354 1 species Desulfatibacillum alkenivorans 0 1574 213113 6 895 0 6 order Desulfurellales 1 5 Desulfurellaceae family 1 0 889 1 117942 84404 9 402 0 2 Hippea genus 1 84405 Hippea maritima species 1 393 0 33001 11 0 486 2 Desulfurella genus 1 Desulfurella acetivorans species 1 475 0 33002 531 69541 24 Desulfuromonadales order 1 0 37758 14 1 family Geobacteraceae 0 25558 184 213422 28231 341 0 23518 genus Geobacter 1 11 28232 0 2031 1 species Geobacter metallireducens Geobacter daltonii species 1 1271 0 1203471 2333 0 Geobacter pickeringii species 1 345632 6314 0 no rank 2 2627627 species Geobacter sp. M21 1 2883 0 443144 Geobacter sp. M18 species 1 3431 0 443143 313985 0 2392 species Geobacter lovleyi 1 2135 0 1 species Geobacter sulfurreducens 35554 351604 1 species Geobacter uraniireducens 1778 0 0 2440 Geobacter bemidjiensis species 1 225194 0 2483 1 species Geobacter anodireducens 1340425 2 Geoalkalibacter genus 1 1856 0 8 392332 483547 1848 0 Geoalkalibacter subterraneus species 1 213421 215 0 11669 9 family Desulfuromonadaceae 1 42 890 3 1 genus Desulfuromonas 4329 0 no rank 1 2231 0 2614637 1823759 species Desulfuromonas sp. DDH964 1 2231 0 0 2056 1 Desulfuromonas soudanensis species 1603606 67 18 5 1 genus Pelobacter 7125 0 19 1 species Pelobacter carbinolicus 1372 0 29543 2877 0 1 species Pelobacter propionicus 1777 0 species Pelobacter acetylenicus 1 29542 1 no rank 1032 0 2620299 0 1032 Pelobacter sp. SFB93 species 1 1842532 213462 85 0 4413 Syntrophobacterales order 1 10 3 family Syntrophobacteraceae 1 0 1586 48 213465 7 29526 2 Syntrophobacter genus 1 0 1538 119484 Syntrophobacter fumaroxidans species 1 1531 0 family Syntrophaceae 1 6 0 2742 7 213468 2357 851 0 1 genus 2358 1 species Desulfomonile tiedjei 0 851 1095 0 2 1 genus Syntrophus 43773 5 316277 1 Syntrophus aciditrophicus species 0 1090 5 60892 1 Desulfobacca genus 2 789 0 60893 784 0 1 Desulfobacca acetoxidans species 1807140 0 2645 6 class Acidithiobacillales order 1 6 2645 0 46 225057 24 225058 5 1 family Acidithiobacillaceae 2599 0 119977 30 0 2575 genus Acidithiobacillus 1 4 33059 1 Acidithiobacillus caldus species 850 0 species Acidithiobacillus ferrooxidans 1 771 0 920 924 0 1 species Acidithiobacillus ferrivorans 160808 2 1553900 13 class Oligoflexia 1 0 3767 1 Bdellovibrionales order 5 2602 0 35 213481 family Bdellovibrionaceae 1 4 0 2567 7 213483 2560 0 Bdellovibrio genus 1 3 958 19 959 0 2226 Bdellovibrio bacteriovorus species 1 453816 0 315 Bdellovibrio exovorus species 1 0 1163 1 Bacteriovoracales order 7 2024979 1 9 1652132 1 Halobacteriovoraceae family 3 0 596 7 1652133 Halobacteriovorax genus 1 2 587 0 580 0 species Halobacteriovorax marinus 1 97084 5 263369 3 1 family Bacteriovoracaceae 566 0 1 genus Bacteriovorax 2 0 561 4 146784 960 557 0 1 Bacteriovorax stolpii species 2053 28211 Alphaproteobacteria class 1 559 0 549371 85307 0 1 Sphingomonadales order 82 204457 705 1 family Sphingomonadaceae 59 65570 0 799 41297 2 1 Blastomonas genus 1176 0 37 150203 1139 0 1 no rank 2626550 species Blastomonas sp. RAC04 1 1139 0 1842535 359 165695 15 Sphingobium genus 1 0 18371 13690 species Sphingobium yanoikuyae 1 1599 0 76947 Sphingobium herbicidovorans species 1 907 0 1063 0 1 species Sphingobium baderi 1332080 1736 0 1 Sphingobium chlorophenolicum species 46429 1 species Sphingobium hydrophobicum 1352 0 1673076 2611147 7344 0 6 no rank 484429 Sphingobium sp. YBL2 species 1 1369 0 species Sphingobium sp. SYK-6 1 1221 0 627192 0 1759 1 Sphingobium sp. TKS species 1315974 407020 Sphingobium sp. MI1205 species 1 889 0 1 species Sphingobium sp. RAC03 0 1080 1843368 1855519 species Sphingobium sp. EP60837 1 1026 0 1 Sphingobium cloacae species 1363 0 120107 1 Sphingobium japonicum species 0 1288 332056 332055 0 1360 Sphingobium indicum species 1 2709685 genus 1 642 0 266812 642 0 Sphingorhabdus flavimaris species 1 0 1359 1 Citromicrobium genus 2 72173 41 2630544 no rank 1 1318 0 1634516 0 1318 species Citromicrobium sp. JL477 1 0 1044 genus 1 2685927 1 species Sphingomonas sp. JJ-A5 1044 0 1921510 541 16 911 0 2 genus Zymomonas 1 1 species Zymomonas mobilis 0 895 542 165697 277 0 10869 10 genus Sphingopyxis 1 267128 1 species Sphingopyxis granuli 0 1468 33052 1 Sphingopyxis terrae species 945 0 2049 0 1 species Sphingopyxis macrogoltabida 33050 0 3998 no rank 4 2614943 1866325 species Sphingopyxis sp. MG 1 0 1436 906 0 1 Sphingopyxis sp. 113P3 species 292913 1 species Sphingopyxis sp. LPB0140 0 364 1913578 0 1292 1 Sphingopyxis sp. QXT-31 species 1357916 species Sphingopyxis fribergensis 1 1035 0 1515612 0 1097 1 species Sphingopyxis alaskensis 117207 115 165696 5 1 genus Novosphingobium 6733 0 158500 1917 0 1 Novosphingobium resinovorum species 1730 0 1 no rank 2644732 702113 1 species Novosphingobium sp. PP1Y 0 1730 1 species Novosphingobium aromaticivorans 0 1366 48935 Novosphingobium pentaromativorans species 1 0 1605 205844 1649486 27 1596 0 Rhizorhabdus genus 1 2 species Rhizorhabdus dicambivorans 1 0 1569 1850238 13687 479 0 20497 1 Sphingomonas genus 15 196159 7345 0 6 no rank species Sphingomonas sp. MM-1 1 0 1359 745310 Sphingomonas sp. LK11 species 1 1262 0 1390395 1030157 1 species Sphingomonas sp. KC8 1097 0 0 1258 1 Sphingomonas sp. NIC1 species 1961362 1 species Sphingomonas sp. Cra20 1172 0 1327635 1938607 0 1197 1 Sphingomonas sp. LM7 species 1 species Sphingomonas sanxanigenens 0 1701 397260 1549858 0 1640 Sphingomonas taxi species 1 152682 species Sphingomonas melonis 1 1298 0 1871 160791 Sphingomonas wittichii species 1 2 3655 0 1283312 1 Sphingomonas sp. DC-6 strain 0 1784 1710 0 1 species Sphingomonas panacis 1560345 Sphingomonas hengshuiensis species 1 0 1340 1609977 93064 0 1329 Sphingomonas koreensis species 1 1434046 39 0 1573 1 genus Sphingorhabdus 3 2614947 no rank 2 1534 0 0 784 1 species Sphingorhabdus sp. YGSMI21 2077182 750 0 1 Sphingorhabdus sp. M41 species 1806885 1 family Erythrobacteraceae 22 19032 0 372 335929 genus 1 0 1190 2800682 0 1190 1 species Altererythrobacter namhicola 645517 3074 0 3 1 genus Croceicoccus 1295327 126 1 species Croceicoccus marinus 1673 0 450378 0 1275 species Croceicoccus naphthovorans 1 1348774 2800788 6 no rank 0 5586 3 genus Erythrobacter 1 0 3153 416 1041 species Porphyrobacter neustonensis 1 944 0 1112 Erythrobacter litoralis species 1 0 1793 39960 1111 143 2433 0 3 1 genus Porphyrobacter 0 2290 2 no rank 2683265 2023229 1125 0 1 species Porphyrobacter HT-58-2 1896196 1165 0 Porphyrobacter sp. LM 6 species 1 4 1 Altererythrobacter genus 2704 0 190 361177 1 Altererythrobacter epoxidivorans species 0 889 361183 0 1208 1 Altererythrobacter atlanticus species 1267766 476157 0 417 1 Altererythrobacter ishigakiensis species 2800685 967 0 1 genus 967 0 1 species Altererythrobacter marensis 543877 1759 0 genus 2 2800681 502682 species Erythrobacter gangjinensis 1 1210 0 species Erythrobacter atlanticus 1 549 0 1648404 genus 2 1546 0 2800686 1982042 735 0 1 species Altererythrobacter mangrovi 0 811 1 species Altererythrobacter dongtanensis 692370 2 genus 0 1834 1855416 0 909 species Erythrobacter flavus 1 192812 species Erythrobacter seohaensis 1 925 0 266951 54526 3 1405 0 order Pelagibacterales 1 8 1655514 5 0 1111 1 family Pelagibacteraceae 6 198251 2 0 556 3 genus Candidatus Pelagibacter 1 0 224 1 no rank 2647897 Candidatus Pelagibacter sp. IMCC9063 species 1 224 0 1002672 1 Candidatus Pelagibacter ubique species 330 0 198252 1655516 2 no rank 0 550 0 233 alpha proteobacterium HIMB59 species 1 744985 1 species alpha proteobacterium HIMB5 317 0 859653 2045213 1 genus 0 291 0 291 Candidatus Fonsibacter ubiquis species 1 1925548 255473 0 445 3 order 2 255474 family Parvularculaceae 1 3 0 445 6 208215 Parvularcula genus 1 2 0 443 437 0 species Parvularcula bermudensis 1 208216 204458 170 25302 0 1 Caulobacterales order 20 19 Caulobacteraceae family 1 25132 0 457 76892 20 27 1852 0 Phenylobacterium genus 1 2 1825 0 1 Phenylobacterium zucineum species 284016 8666 0 genus Brevundimonas 1 7 41275 198 1 species Brevundimonas vesicularis 1294 0 41276 2622653 no rank 3 4361 0 0 1800 species Brevundimonas sp. LM2 1 1938605 0 1332 Brevundimonas sp. DS20 species 1 1532555 1827469 1229 0 species Brevundimonas sp. GW460-12-10-14-LB2 1 74313 1461 0 1 species Brevundimonas subvibrioides 0 1352 Brevundimonas naejangsanensis species 1 588932 2 1 Asticcacaulis genus 0 1530 28 76890 1 species Asticcacaulis excentricus 1502 0 78587 81440 0 666 1 no rank 1759059 666 0 1 species Caulobacteraceae bacterium OTSz_A_272 252 75 6 1 Caulobacter genus 0 11961 1 Caulobacter vibrioides species 0 3744 155892 2648921 no rank 1 0 2261 1 Caulobacter sp. K31 species 0 2261 366602 69395 1686 0 1 Caulobacter henricii species species Caulobacter mirabilis 1 0 1994 69666 88688 1 Caulobacter segnis species 2024 0 82117 no rank 8 6020 0 1 Polymorphum genus 2 2039 0 29 991903 991904 species Polymorphum gilvum 1 0 2010 Micavibrio genus 1 2 0 1179 18 213485 Micavibrio aeruginosavorus species 1 1161 0 349221 1 genus Phreatobacter 2 2183 0 45 1632780 1868589 0 2138 1 Phreatobacter sp. S-12 species 2 clade 0 619 62654 2 767891 1 Candidatus Puniceispirillum genus 2 0 619 767892 species Candidatus Puniceispirillum marinum 1 617 0 838 204441 66 1 Rhodospirillales order 0 79385 1 Acetobacteraceae family 35 0 30642 424 433 3 91914 2 genus Asaia 1 0 766 763 0 1 Asaia bogorensis species 91915 1 genus Kozakia 2 951 0 3 153497 1 Kozakia baliensis species 0 948 153496 364409 39 0 2415 genus Granulibacter 1 2 0 2376 1 species Granulibacter bethesdensis 364410 434 92 6677 0 1 Acetobacter genus 8 65959 Acetobacter pomorum species 1 0 493 2066 0 1 species Acetobacter pasteurianus 438 1633874 0 473 species Acetobacter oryzifermentans 1 104102 1 species Acetobacter tropicalis 952 0 939 0 species Acetobacter persici 1 1076596 151157 subgenus 1 820 0 435 820 0 species Acetobacter aceti 1 species Acetobacter senegalensis 1 0 842 446692 150 1434011 5 genus Komagataeibacter 1 0 5406 33995 1 Komagataeibacter europaeus species 866 0 0 2288 species Komagataeibacter xylinus 1 28448 265960 species Komagataeibacter nataicola 1 0 1263 Komagataeibacter medellinensis species 1 0 839 1177712 3 genus Roseomonas 1 0 5105 120 125216 2617492 no rank 1 0 2428 2018065 2428 0 species Roseomonas sp. FDAARGOS_362 1 257708 Roseomonas gilardii species 1 2557 0 genus Parasaccharibacter 1 2 0 701 7 1602345 1510841 1 Parasaccharibacter apium species 0 694 genus Acidiphilium 1 3 2921 0 140 522 62140 Acidiphilium multivorum species 1 1401 0 1380 0 species Acidiphilium cryptum 1 524 genus Gluconacetobacter 1 2 1619 0 17 89583 species Gluconacetobacter diazotrophicus 1 1602 0 33996 441 30 0 2623 3 Gluconobacter genus 1 442 0 1807 1 Gluconobacter oxydans species 318683 1 Gluconobacter albidus species 786 0 13 320496 2 1 Neoasaia genus 1034 0 320497 0 1021 1 Neoasaia chiangmaiensis species 778 41295 30 1 family Rhodospirillaceae 0 47905 2 1 Haematospirillum genus 0 523 2 1804663 Haematospirillum jordaniae species 1 521 0 1549855 1 1182780 genus Magnetospira 1 2 1038 0 2685734 0 1037 no rank 1 Magnetospira sp. QH-2 species 1 0 1037 1288970 1263978 1 genus 0 270 1263979 0 270 Candidatus Endolissoclinum faulkneri species 1 0 2134 2 Niveispirillum genus 1 1543704 33 1612173 Niveispirillum cyanobacteriorum species 1 0 2101 13134 264 10674 0 5 1 Magnetospirillum genus 5048 0 2 no rank 2617991 species Magnetospirillum sp. XM-1 1 0 2591 1663591 2457 0 1 Magnetospirillum sp. ME-1 species 1639348 55518 1 Magnetospirillum gryphiswaldense species 0 2802 84159 2560 0 1 species Magnetospirillum magneticum 168934 20 0 2351 3 genus Thalassospira 1 220697 1 species Thalassospira xiamenensis 1023 0 2048283 1 species Thalassospira sp. CSC3H3 0 1308 18235 0 1 genus Azospirillum 5 191 388 1226968 0 1819 species Azospirillum humicireducens 1 192 1 Azospirillum brasilense species 5897 0 193 Azospirillum lipoferum species 1 0 6447 Azospirillum thiophilum species 1 3684 0 528244 2 genus Nitrospirillum 1 0 3681 46 1543705 1 species Nitrospirillum amazonense 3635 0 28077 4255 0 3 Rhodospirillum genus 1 1081 54 34018 1 Rhodospirillum centenum species 2519 0 1085 0 1682 Rhodospirillum rubrum species 1 1189 0 Pararhodospirillum genus 1 2 1612157 26 1084 0 1163 1 species Pararhodospirillum photometricum 72 171436 1 genus Tistrella 2 0 2777 0 2705 species Tistrella mobilis 1 171437 2800060 2413 0 5 order 25 69657 5 1 family Hyphomonadaceae 0 2413 genus 1 0 655 2723 1 species Hirschia baltica 0 655 2724 0 1733 3 genus Hyphomonas 1 85 26 2630699 1 no rank 0 683 1906738 1 species Hyphomonas sp. Mor2 0 683 81032 species Hyphomonas neptunium 1 0 1024 18 766 1 order Rickettsiales 53 7201 0 1328881 10 110 0 2 family Candidatus Midichloriaceae 1 411566 0 100 genus 1 0 100 Candidatus Midichloria mitochondrii species 1 234827 7 775 1 Rickettsiaceae family 27 0 3575 tribe 25 3213 0 33988 326 780 genus Rickettsia 1 23 2844 0 114277 1317 0 17 species group 35792 Rickettsia parkeri species 1 0 49 35794 0 9 Rickettsia slovaca species 1 1 Rickettsia heilongjiangensis species 0 12 226665 species Rickettsia felis 1 229 0 42862 0 54 1 Rickettsia rickettsii species 783 0 74 Rickettsia amblyommatis species 1 33989 47589 59 0 1 species Rickettsia peacockii 787 species Rickettsia australis 1 0 231 109232 Rickettsia monacensis species 1 160 0 33992 1 species Rickettsia rhipicephali 0 38 33991 species Rickettsia montanensis 1 0 43 781 species Rickettsia conorii 1 24 0 Rickettsia japonica species 1 13 0 35790 35791 1 species Rickettsia massiliae 85 0 164 0 Rickettsia akari species 1 786 1 Rickettsia africae species 39 0 35788 1105106 0 34 1 species Rickettsia philipii 2 species group 490 0 1129742 1 Rickettsia bellii species 0 312 33990 788 1 species Rickettsia canadensis 178 0 0 245 1 no rank 114295 Rickettsia endosymbiont of Bemisia tabaci species 1 0 245 337479 114292 species group 2 466 0 Rickettsia prowazekii species 1 0 207 782 0 259 1 species Rickettsia typhi 785 0 369 2 1 Orientia genus 69474 2 1 Orientia tsutsugamushi species 0 367 784 2115980 1 genus 0 355 2115978 0 355 1 species Candidatus Phycorickettsia trachydisci 22 family Anaplasmataceae 1 0 3163 6 942 genus 3 646 0 768 106179 0 202 species group 1 948 species Anaplasma phagocytophilum 1 0 202 0 208 1 Anaplasma centrale species 769 770 1 Anaplasma marginale species 0 236 6 1 genus Ehrlichia 0 1051 5 943 821 0 4 species group 106178 144 0 Ehrlichia muris species 1 35795 945 1 Ehrlichia chaffeensis species 0 159 944 1 Ehrlichia canis species 0 240 1 species Ehrlichia ruminantium 278 0 779 no rank 1 225 0 106181 391036 0 225 species Ehrlichia sp. HF 1 0 373 4 1 Neorickettsia genus 33993 2 950 1 species Neorickettsia risticii 0 109 951 0 120 Neorickettsia sennetsu species 1 1 species Neorickettsia helminthoeca 0 142 33994 0 1087 tribe 8 952 953 9 1087 0 genus Wolbachia 1 8 2640676 7 no rank 0 1078 66084 Wolbachia sp. wRi species 1 0 151 100901 1 Wolbachia endosymbiont of Onchocerca ochengi species 101 0 101 0 Wolbachia endosymbiont of Onchocerca volvulus species 1 77551 1 species Wolbachia endosymbiont of Drosophila melanogaster 0 145 163164 0 123 1 species Wolbachia endosymbiont of Brugia malayi 80849 species Wolbachia endosymbiont of Drosophila simulans 1 0 300 77038 246273 1 Wolbachia endosymbiont of Cimex lectularius species 0 157 1699067 0 335 no rank 1 1528098 1 Rickettsiales bacterium Ac37b species 335 0 2 order 0 1217 2800059 family 2 1217 0 2800061 genus Maricaulis 1 2 1217 0 21 74317 0 1196 1 Maricaulis maris species 74318 242144 0 211 1 Rhizobiales order 356 2638 24057 0 20 1 Phyllobacteriaceae family 69277 219 2 1 genus Aminobacter 2456 0 35 31988 83263 1 Aminobacter aminovorans species 2421 0 9 449972 2 1 Chelativorans genus 1311 0 1 no rank 0 1302 2643807 266779 0 1302 species Chelativorans sp. BNC1 1 1238 0 2 Hoeflea genus 1 274591 6 no rank 1 1232 0 2614931 0 1232 1 Hoeflea sp. IMCC20628 species 1620421 2 Phyllobacterium genus 1 1166 0 8 28100 1 Phyllobacterium zundukense species 0 1158 1867719 495 68287 1 Mesorhizobium genus 9 16731 0 0 2334 1 species Mesorhizobium loti 381 2029 0 1 Mesorhizobium japonicum species 2066070 593909 species Mesorhizobium opportunistum 1 2245 0 0 1420 1 Mesorhizobium sp. B7 species 1670800 325217 no rank 1 1866 0 Mesorhizobium sp. WSM1497 species 1 1866 0 278153 71433 2246 0 Mesorhizobium amorphae species 1 Mesorhizobium ciceri species 1 2397 0 39645 Mesorhizobium australicum species 1 0 1699 536018 936 0 1 Nitratireductor genus 2 245876 20 Nitratireductor basaltis species 1 0 916 472175 0 9210 1 Brucellaceae family 20 118882 54 1 Brucella genus 14 0 4442 1697 234 120577 Brucella ceti species 1 0 232 species Brucella suis 1 0 201 29461 236 0 75 1 Brucella ovis species 235 1 Brucella abortus species 0 158 0 153 species Brucella melitensis 1 29459 327 0 1 Brucella vulpis species 981386 227 0 1 Brucella canis species 36855 no rank 4 1004 0 2632610 1844051 321 0 species Brucella sp. 09RB8910 1 1149952 0 266 Brucella sp. 09RB8471 species 1 1885919 0 358 1 Brucella sp. 141012304 species 0 59 species Brucella sp. 2002734562 1 1891098 444163 0 115 Brucella microti species 1 120576 1 Brucella pinnipedialis species 0 253 87 528 genus Ochrobactrum 1 5 4714 0 1164 0 1 species Ochrobactrum pseudogrignonense 419475 571256 1 species Ochrobactrum pituitosum 0 1257 0 1116 species Ochrobactrum anthropi 1 529 1 Ochrobactrum sp. A44 species 1090 0 271865 6 no rank 0 4708 119042 2 genus Hartmannibacter 1 0 1846 31 1572860 1482074 0 1815 Hartmannibacter diazotrophicus species 1 2 1 genus Methyloceanibacter 1520 0 49 1484898 0 1471 Methyloceanibacter caenitepidi species 1 1384459 77 1734920 2 1 Pseudorhodoplanes genus 1342 0 1235591 Pseudorhodoplanes sinuspersici species 1 0 1265 29799 0 15 Methylobacteriaceae family 1 119045 177 Microvirga genus 1 2 0 2573 59 186650 0 2514 1 species Microvirga ossetica 1882682 16684 0 1 Methylobacterium genus 9 407 900 270351 1 species Methylobacterium aquaticum 2412 0 334852 0 1770 1 Methylobacterium oryzae species 418223 1 species Methylobacterium phyllosphaerae 0 1605 Methylobacterium nodulans species 1 0 2249 114616 2615210 no rank 3 0 5720 0 1769 1 species Methylobacterium sp. AMS5 925818 426117 Methylobacterium sp. 4-46 species 1 0 2027 species Methylobacterium sp. C1 1 0 1924 1479019 31998 1 Methylobacterium radiotolerans species 0 2028 2282523 0 10365 genus 3 0 5278 1 Methylobacterium extorquens species 408 223967 0 3465 species Methylobacterium populi 1 29429 species Methylobacterium zatmanii 1 0 1622 608 41294 26 1 family Bradyrhizobiaceae 0 47280 0 1283 2 1 Oligotropha genus 40136 41 40137 Oligotropha carboxidovorans species 1 1242 0 15 911 Nitrobacter genus 1 3 1890 0 913 0 771 Nitrobacter winogradskyi species 1 912 1104 0 1 Nitrobacter hamburgensis species 1 genus Bosea 5 7731 0 153 85413 1 species Bosea vaviloviae 0 1920 1526658 2653178 3 no rank 5658 0 Bosea sp. AS-1 species 1 0 1948 2015316 1792307 1 Bosea sp. PAMC 26642 species 1574 0 1842539 2136 0 1 species Bosea sp. RAC05 374 643 24126 0 11 1 Bradyrhizobium genus 12724 0 no rank 6 2631580 0 1968 Bradyrhizobium sp. species 1 376 2057741 species Bradyrhizobium sp. SK17 1 2211 0 1 Bradyrhizobium sp. CCGE-LA001 species 0 1785 1223566 species Bradyrhizobium sp. BTAi1 1 0 2337 288000 2354 0 species Bradyrhizobium sp. ORS 278 1 114615 species Bradyrhizobium sp. ORS 285 1 0 2069 115808 0 2275 Bradyrhizobium oligotrophicum species 1 44255 0 1440 species Bradyrhizobium icense 1 1274631 0 3332 Bradyrhizobium japonicum species 1 375 1355477 species Bradyrhizobium diazoefficiens 1 0 3712 0 929 genus Variibacter 1 2 1649510 28 1333996 0 901 1 species Variibacter gotjawalensis 2 1 genus Rhodopseudomonas 10713 0 207 1073 1 Rhodopseudomonas palustris species 0 10506 1076 1141 0 family 2 119043 55 256616 2 Parvibaculum genus 1 0 1141 species Parvibaculum lavamentivorans 1 0 1086 256618 5 family Beijerinckiaceae 1 0 1713 1 45404 964 0 2 1 genus Methylocella 120652 9 955 0 1 species Methylocella silvestris 199596 532 14 748 0 1 genus Beijerinckia 2 533 species Beijerinckia indica 1 734 0 7 family Aurantimonadaceae 1 8508 0 60 255475 25 414371 2 1 genus Aureimonas 1851 0 2615206 1 no rank 1826 0 1349819 1826 0 1 species Aureimonas sp. AU20 0 6597 Martelella genus 1 4 293088 190 species Martelella endophytica 1 2150 0 1486262 1 no rank 0 2220 2629616 686597 0 2220 Martelella sp. AD-3 species 1 293089 1 species Martelella mediterranea 0 2037 20 2036754 4 family Chelatococcaceae 1 0 4042 0 4022 3 1 Chelatococcus genus 28209 147 0 2462 no rank 1 2638111 1702325 2462 0 1 Chelatococcus sp. CO-6 species 444444 0 1413 1 species Chelatococcus daeguensis 6 family Methylocystaceae 1 3717 0 25 31993 0 2035 genus Methylocystis 1 3 133 31 906 0 no rank 1 2625913 187303 906 0 1 Methylocystis sp. SC2 species 0 1098 species Methylocystis bryophila 1 655015 56 425 1 genus Methylosinus 2 1657 0 426 0 1601 1 species Methylosinus trichosporium 38 772 18 1 family Bartonellaceae 0 4741 genus Bartonella 1 17 0 4703 48 773 33045 1 species Bartonella grahamii 273 0 803 160 0 1 Bartonella quintana species species Bartonella vinsonii 1 0 147 33047 1686310 1 Bartonella apis species 1370 0 0 238 1 species Bartonella ancashensis 1318743 species Bartonella henselae 1 0 196 38323 0 376 species Bartonella tribocorum 1 85701 774 1 species Bartonella bacilliformis 0 184 247 0 Bartonella clarridgeiae species 1 56426 1247 0 6 no rank 2645622 204 0 species Bartonella sp. A1379B 1 1933910 Bartonella sp. JB63 species 1 0 185 1933907 1 Bartonella sp. 1-1C species 223 0 515256 1933906 1 species Bartonella sp. JB15 0 185 1933904 1 Bartonella sp. WD16.2 species 0 280 1933912 0 170 1 Bartonella sp. Raccoon60 species 388640 1 Bartonella australis species 0 217 45401 153 15892 0 1 Hyphomicrobiaceae family 19 2 genus Filomicrobium 1 463 0 8 119044 1608628 0 455 1 Candidatus Filomicrobium marinum species 2 1 Rhodoplanes genus 2141 0 79 29407 2619116 0 2062 no rank 1 0 2062 species Rhodoplanes sp. Z2-YC6860 1 674703 4 1 Devosia genus 0 4846 160 46913 196773 0 4686 no rank 3 1643450 1600 0 species Devosia sp. H5989 1 1 Devosia sp. I507 species 0 1120 2083786 1 species Devosia sp. A16 0 1966 1736675 1683 0 1 Blastochloris genus 2 59282 54 1 Blastochloris viridis species 1629 0 1079 genus Rhodomicrobium 1 2 1060 0 26 1068 species Rhodomicrobium vannielii 1 0 1034 1069 90 81 genus Hyphomicrobium 1 4 0 4564 Hyphomicrobium denitrificans species 1 0 1491 53399 2619925 0 1368 1 no rank Hyphomicrobium sp. MC1 species 1 1368 0 717785 Hyphomicrobium nitrativorans species 1 0 1615 1427356 1082930 14 982 0 1 Pelagibacterium genus 2 531813 968 0 1 species Pelagibacterium halotolerans 7 family Xanthobacteraceae 1 7473 0 85 335928 Starkeya genus 1 2 0 2026 65 152053 species Starkeya novella 1 1961 0 921 279 40 0 2614 2 1 Xanthobacter genus 280 0 2574 Xanthobacter autotrophicus species 1 0 2748 2 Azorhizobium genus 1 6 54 species Azorhizobium caulinodans 1 2694 0 7 55 Rhizobiaceae family 1 77225 0 849 82115 34019 33 846 0 genus Liberibacter 1 6 309868 1 species Candidatus Liberibacter americanus 0 169 1273132 0 209 1 species Liberibacter crescens 34020 177 0 1 species Candidatus Liberibacter africanus 34021 1 species Candidatus Liberibacter asiaticus 117 0 556287 141 0 species Candidatus Liberibacter solanacearum 1 0 55966 36 no rank 227290 379 2676 39965 0 27 1 genus Rhizobium 1338 0 1 species Rhizobium tropici 398 1 species Rhizobium leguminosarum 0 9114 384 56730 2381 0 species Rhizobium gallicum 1 no rank 21 0 16821 2613769 1 species Rhizobium sp. IRBG74 1430 0 424182 2020312 0 1223 1 species Rhizobium sp. CIAT894 1703964 0 7 species Rhizobium sp. N621 1 1703967 6 0 1 Rhizobium sp. N741 species 1703968 1 species Rhizobium sp. N871 0 6 species Rhizobium sp. N1314 1 270 0 1703961 4 0 species Rhizobium sp. N113 1 1703960 1 Rhizobium sp. TAL182 species 349 0 2020313 2020311 0 998 species Rhizobium sp. Kim5 1 1703969 Rhizobium sp. N324 species 1 0 1473 species Rhizobium sp. N731 1 270 0 1703966 0 1000 Rhizobium sp. IE4771 species 1 1301032 0 1425 1 species Rhizobium sp. NXC24 2048897 1125847 Rhizobium sp. NT-26 species 1 0 1023 1869170 0 1485 1 species Rhizobium sp. S41 1369 0 1 species Rhizobium sp. Y9 1914541 Rhizobium sp. NXC14 species 1 0 929 1981173 species Rhizobium sp. 10195 1 0 1716 2028343 1 species Rhizobium sp. N1341 4 0 1703962 0 7 1 Rhizobium sp. N6212 species 1703965 1 species Rhizobium sp. ACO-34A 0 1827 1571470 2882 0 species Rhizobium phaseoli 1 396 29449 0 4753 1 Rhizobium etli species 0 2711 Neorhizobium genus 1 2 1525371 11 species Neorhizobium galegae 1 0 2700 399 305 357 1 Agrobacterium genus 7 0 13290 2866 0 2 no rank 2632611 1467 0 1 species Agrobacterium sp. H13-3 861208 1842536 0 1399 species Agrobacterium sp. RAC06 1 1554 0 Agrobacterium rhizogenes species 1 359 0 7165 species group 2 1183400 1176649 species Agrobacterium fabrum 1 1339 0 1 Agrobacterium tumefaciens species 0 5826 358 373 species Agrobacterium vitis 1 0 1400 227292 0 16795 no rank 10 0 13596 1 Sinorhizobium genus 7 28105 370 1 species Sinorhizobium medicae 0 1239 110321 2613772 0 3314 2 no rank species Sinorhizobium sp. RAC02 1 1894 0 1842534 794846 1420 0 1 species Sinorhizobium sp. CCBAU 05631 3595 0 1 species group 663276 3595 0 1 species Sinorhizobium fredii 380 3301 0 1 Sinorhizobium meliloti species 382 Sinorhizobium americanum species 1 0 1777 194963 1 genus Ensifer 3 3199 0 60 106591 716925 1 species Ensifer sojae 0 1532 Ensifer adhaerens species 1 1607 0 106592 2769 0 2 genus Shinella 1 323620 19 2643062 1 no rank 0 2750 1 Shinella sp. HZN7 species 2750 0 879274 204455 610 0 94670 90 Rhodobacterales order 1 1964 31989 1 Rhodobacteraceae family 89 0 94060 265 265 Paracoccus genus 1 9 14608 0 Paracoccus denitrificans species 1 0 2334 266 species Paracoccus sp. CBA4604 1 0 1726 2065379 147645 0 2517 1 Paracoccus yeei species 0 2079 1 Paracoccus aminovorans species 34004 1945662 0 1568 1 Paracoccus contaminans species 1077935 1748 0 species Paracoccus zhejiangensis 1 246570 1 no rank 1135 0 Paracoccus sp. BM15 species 1 1135 0 1529068 species Paracoccus aminophilus 1 1236 0 34003 285107 1 1054 0 1 genus Thioclava 2 species Thioclava nitratireducens 1 1053 0 1915078 738 0 2 Marivivens genus 1 1759396 6 2622455 1 no rank 732 0 1 Marivivens sp. JLT3646 species 732 0 1920883 4311 0 genus 2 263377 1229727 species Thiobacimonas profunda 1 2160 0 0 2151 1 no rank 2640570 0 2151 1 species Yangia sp. CCB-MM3 1792508 0 2960 Sulfitobacter genus 1 3 60136 13 0 1358 1 Sulfitobacter pseudonitzschiae species 1402135 196795 no rank 1 0 1589 species Sulfitobacter sp. AM1-D1 1 1589 0 1917485 436357 2 0 genus Thalassococcus 1 2255 0 3 1 genus Ketogulonicigenium 92944 29 1 species Ketogulonicigenium robustum 0 1051 92947 92945 1 Ketogulonicigenium vulgare species 0 1175 1 159345 2 1 genus Roseibacterium 1098 0 Roseibacterium elongatum species 1 1097 0 159346 no rank 2 1854 0 58840 Rhodobacteraceae bacterium QY30 species 1 1173 0 2033435 1904441 681 0 Rhodobacteraceae bacterium species 1 5 1 Phaeobacter genus 0 8728 112 302485 2636 0 1 Phaeobacter gallaeciensis species 60890 0 2214 1 Phaeobacter piscinae species 1580596 species Phaeobacter inhibens 1 0 2824 221822 1844006 1 Phaeobacter porticola species 942 0 Rhodobaca genus 1 2 0 756 5 119541 751 0 Rhodobaca barguzinensis species 1 441209 53945 13 0 1637 1 genus Octadecabacter 4 1217908 512 0 1 species Octadecabacter antarcticus 1458307 species Octadecabacter temperatus 1 0 541 53946 1 species Octadecabacter arcticus 0 571 188905 1 0 968 genus Jannaschia 1 2 2645469 no rank 1 0 967 967 0 1 species Jannaschia sp. CCS1 290400 1 genus 0 1185 1649279 379347 0 1185 species Ruegeria mobilis 1 1268 0 genus 1 2211641 245188 0 1268 species Loktanella vestfoldensis 1 2 1 genus Marinovum 0 2459 25 367771 42444 2434 0 Marinovum algicola species 1 1 genus 0 1677 309512 215813 1 species Dinoroseobacter shibae 1677 0 33 360528 Pelagibaca genus 1 2 2070 0 1 species Pelagibaca abyssi 2037 0 1250539 74032 0 1380 1 genus 1380 0 Antarctobacter heliothermus species 1 74033 478070 161 4748 0 Labrenzia genus 1 4 2648686 3002 0 no rank 2 1 Labrenzia sp. CP4 species 1638 0 1674922 2021862 1 Labrenzia sp. VG12 species 1364 0 187304 Labrenzia aggregata species 1 1585 0 59 34008 genus Rhodovulum 1 4 0 4908 no rank 2 2527 0 2631432 1564506 1 species Rhodovulum sp. P5 0 1314 308754 1 Rhodovulum sp. MB263 species 0 1213 2322 0 1 Rhodovulum sulfidophilum species 35806 5 Celeribacter genus 1 4720 0 19 875170 1208324 0 1492 Celeribacter indicus species 1 Celeribacter marinus species 1 543 0 1397108 1758178 1367 0 Celeribacter ethanolicus species 1 1411902 species Celeribacter manganoxidans 1 0 1299 2620 0 Pannonibacter genus 1 2 227873 33 121719 Pannonibacter phragmitetus species 1 2587 0 14 1609958 1 genus Confluentimicrobium 2 1724 0 1 no rank 1710 0 2643318 1609966 Confluentimicrobium sp. EMB200-NS6 species 1 1710 0 2 299261 2 1 Tateyamaria genus 1028 0 1 species Tateyamaria omphalii 1026 0 299262 genus 1 0 1594 191028 species Leisingera methylohalidivorans 1 0 1594 133924 0 9099 Rhodobacter genus 1 5 1060 271 species Rhodobacter capsulatus 1 1728 0 1061 Rhodobacter sphaeroides species 1 4416 0 1063 2 no rank 0 2684 196779 1850250 1179 0 1 Rhodobacter sp. LPB0142 species 2033869 0 1505 species Rhodobacter sp. CZR27 1 12 1097466 genus Defluviimonas 1 2 2057 0 1335048 2045 0 1 species Defluviimonas alba 465 0 1 genus 1284657 1284658 0 465 1 species Planktomarina temperata 2 Sagittula genus 1 2498 0 5 58842 2493 0 1 no rank 2624628 2493 0 species Sagittula sp. P11 1 2009329 0 1566 genus Roseobacter 1 3 2433 9 2434 0 766 1 species Roseobacter denitrificans 0 791 1 species Roseobacter litoralis 42443 97050 7 0 2606 1 genus Ruegeria 3 89184 1675 0 1 species Ruegeria pomeroyi 2625375 924 0 no rank 1 292414 924 0 1 species Ruegeria sp. TM1040 17 0 genus Loktanella 1 245186 1 1579315 2 genus Halocynthiibacter 1 367 0 1579316 366 0 1 species Halocynthiibacter arcticus 2 1 genus Roseovarius 1071 0 4 74030 1067 0 1 species Roseovarius mucosus 215743 1191478 11 0 1021 4 Magnetococcales order 1 1 Magnetococcaceae family 3 0 1010 10 1191479 1000 0 2 1 genus Magnetococcus 162171 1 0 999 Magnetococcus marinus species 1 1124597 3 1921002 6 order Holosporales 1 0 788 3 1777752 2 Candidatus Paracaedibacteraceae family 1 0 214 1521255 0 211 genus 1 211 0 1 Candidatus Paracaedibacter acanthamoebae species 91604 2100208 0 231 family 2 genus Candidatus Nucleicultrix 1 2 231 0 1 1509243 1509244 Candidatus Nucleicultrix amoebiphila species 1 230 0 44746 1 family 340 0 204454 340 0 no rank 1 0 340 species endosymbiont of Acanthamoeba sp. UWC8 1 86106 57723 6 13515 0 1 phylum Acidobacteria 21 75 204432 class Acidobacteriia 1 17 11986 0 Acidobacteriales order 1 12 0 9629 90 204433 204434 126 9539 0 family Acidobacteriaceae 1 11 0 1648 2 1 Acidobacterium genus 33973 9 33075 1639 0 1 Acidobacterium capsulatum species 1505 0 2 1 genus Candidatus Koribacter 658061 39 1 Candidatus Koribacter versatilis species 0 1466 658062 genus Granulicella 1 3 3165 0 30 940557 1 species Granulicella mallensis 0 1671 940614 940615 1464 0 Granulicella tundricola species 1 genus Terriglobus 1 3 0 3095 18 392733 0 1337 Terriglobus saanensis species 1 870903 392734 Terriglobus roseus species 1 1740 0 46 332160 1 order Solibacterales 4 0 2282 0 2236 1 family Solibacteraceae 3 332161 30 37 332162 1 Candidatus Solibacter genus 2 0 2206 0 2169 1 species Candidatus Solibacter usitatus 332163 15 1562566 3 class Blastocatellia 1 1523 0 genus Chloracidobacterium 1 2 0 1508 16 458032 0 1492 Chloracidobacterium thermophilum species 1 458033 278 superkingdom 0 65319 2157 1 clade 0 46 1783276 46 0 phylum 1 1801631 46 0 1 genus 2490204 1920749 1 species Candidatus Micrarchaeota archaeon Mia14 0 46 1 phylum Euryarchaeota 225 60520 0 5 28890 2290931 0 38586 117 clade 0 22116 65 class Halobacteria 1 183963 154 0 8803 28 1 order Halobacteriales 2235 81 17 2236 11 1 Halobacteriaceae family 2681 0 28 2239 1 Halobacterium genus 4 0 1680 1 Halobacterium salinarum species 382 0 2242 0 588 1 no rank 2668073 588 0 1 Halobacterium sp. DL1 species 751944 1 species Halobacterium hubeiense 682 0 1407499 270 0 1 Halanaeroarchaeum genus 2 1656823 6 1604004 1 Halanaeroarchaeum sulfurireducens species 264 0 1980514 1 0 336 2 1 Halodesulfurarchaeum genus 1 Halodesulfurarchaeum formicicum species 0 335 1873524 0 378 1 Halalkalicoccus genus 2 332246 3 413810 1 species Halalkalicoccus jeotgali 0 375 1963268 27 0 6041 16 1 Haloarculaceae family 203135 12 754 0 1 Halomicrobium genus 2 57705 742 0 Halomicrobium mukohataei species 1 0 1131 genus Halorhabdus 1 3 146825 7 1 Halorhabdus utahensis species 714 0 146826 430914 410 0 1 species Halorhabdus tiamatea 0 869 3 Natronomonas genus 1 63743 14 472 0 1 Natronomonas moolapensis species 416273 2257 383 0 species Natronomonas pharaonis 1 2687 0 genus Haloarcula 1 5 2237 61 506 0 species Haloarcula taiwanensis 1 1932004 51589 797 0 species Haloarcula hispanica 1 697 0 1 no rank 2624677 1592728 1 species Haloarcula sp. CBA1115 0 697 2238 0 626 Haloarcula marismortui species 1 9 1073987 2 1 Halorientalis genus 0 573 0 564 no rank 1 2648975 1932360 1 Halorientalis sp. IM1011 species 564 0 18 Haloferacales order 1 0 6535 61 1644055 5 1644056 family Haloferacaceae 1 8 0 3096 0 437 2 genus Halogeometricum 1 60846 1 Halogeometricum borinquense species 1 436 0 60847 268 0 1 genus 293431 268 0 1 Haloquadratum walsbyi species 293091 0 2386 1 Haloferax genus 4 2251 37 35746 species Haloferax gibbonsii 1 962 0 2246 1 species Haloferax volcanii 0 898 2252 0 489 1 species Haloferax mediterranei 0 650 1 no rank 2678336 756883 species halophilic archaeon DL31 1 650 0 1 Halorubraceae family 8 2728 0 9 1963271 5 1644057 1 genus Salinigranum 2 841 0 1 Salinigranum rubrum species 0 836 755307 56688 40 1303 0 1 Halorubrum genus 3 2247 522 0 Halorubrum lacusprofundi species 1 741 0 species Halorubrum trapanicum 1 29284 1209988 18 0 575 2 genus Halopenitus 1 1048396 species Halopenitus persicus 1 0 557 0 6624 18 Natrialbales order 1 1644060 87 0 6537 17 family Natrialbaceae 1 1644061 68 1269201 504 0 genus 1 2621923 no rank 1 504 0 1333523 1 Salinarchaeum sp. Harcht-Bsk1 species 504 0 63742 6 554 0 2 genus Natrialba 1 13769 1 species Natrialba magadii 548 0 0 755 genus 1 29287 1 species Natronococcus occultus 755 0 29288 1 genus 0 761 203193 229731 0 761 species Halobiforma lacisalsi 1 2256 304 0 1 genus 44930 304 0 1 species Natronobacterium gregoryi 3 1 genus Haloterrigena 0 1169 14 121871 species Haloterrigena daqingensis 1 392 0 588898 62320 763 0 1 Haloterrigena turkmenica species 88723 6 0 1183 1 Natrinema genus 3 588 0 1 species Natrinema pellirubrum 69525 2622230 589 0 no rank 1 406552 1 species Natrinema sp. J7-2 0 589 3 353799 Halostagnicola genus 1 2 0 374 Halostagnicola larsenii species 1 0 371 353800 865 0 2 genus Halopiger 1 387342 4 387343 1 species Halopiger xanaduensis 0 861 224756 36 16470 0 52 1 Methanomicrobia class 16 Methanomicrobiales order 1 0 4813 25 2191 6 1 Methanoregulaceae family 0 1573 6 1198451 475087 3 657 0 1 Methanosphaerula genus 2 Methanosphaerula palustris species 1 0 654 475088 0 910 genus Methanoregula 1 3 395331 4 358766 0 351 Methanoregula boonei species 1 882104 0 555 1 species Methanoregula formicica 1 2194 family Methanomicrobiaceae 1 7 2276 0 1 Methanolacinia genus 2 359 0 1 230355 54120 Methanolacinia petrolearia species 1 358 0 15 45989 4 genus Methanoculleus 1 0 1916 Methanoculleus marisnigri species 1 0 688 2198 2619537 0 580 no rank 1 1 Methanoculleus sp. MAB1 species 0 580 86622 Methanoculleus bourgensis species 1 633 0 83986 196137 1 family 298 0 2202 298 0 1 genus 298 0 1 Methanospirillum hungatei species 2203 88404 family 1 0 641 2192 1 genus 0 641 83984 1 species Methanocorpusculum labreanum 0 641 27 94695 30 order Methanosarcinales 1 0 10610 1 family Methanosarcinaceae 25 9648 0 11 2206 0 6757 1 genus Methanosarcina 13 2207 31 1 Methanosarcina siciliae species 0 656 38027 2210 322 0 Methanosarcina thermophila species 1 2644672 4 no rank 1571 0 1434100 species Methanosarcina sp. MTP4 1 0 439 1 Methanosarcina sp. WH1 species 0 300 1434102 1434099 Methanosarcina sp. Kolksee species 1 0 479 353 0 1 species Methanosarcina sp. WWM596 1434103 851 0 species Methanosarcina mazei 1 2209 418008 738 0 1 Methanosarcina horonobensis species 412 0 species Methanosarcina vacuolata 1 2215 2214 species Methanosarcina acetivorans 1 555 0 Methanosarcina barkeri species 1 0 1311 2208 0 310 Methanosarcina lacustris species 1 170861 Methanohalophilus genus 1 3 0 653 16 2175 2176 1 Methanohalophilus mahii species 0 347 2177 0 290 species Methanohalophilus halophilus 1 354 0 1 genus 196136 39669 354 0 species Methanosalsum zhilinae 1 1 genus 333 0 2321 2322 0 333 1 species Methanohalobium evestigatum 1 genus 541 0 101191 101192 541 0 Methanomethylovorans hollandica species 1 1 2220 1 genus Methanolobus 2 0 388 420950 387 0 1 species Methanolobus psychrophilus 1 Methanococcoides genus 3 0 611 4 2225 1 Methanococcoides burtonii species 0 277 29291 1 Methanococcoides methylutens species 0 330 2226 4 family Methanosaetaceae 1 935 0 10 143067 2222 2 0 925 3 1 genus Methanothrix 2223 0 458 1 species Methanothrix soehngenii 0 465 1 Methanosaeta harundinacea species 301375 1011 0 1 order Methanocellales 5 570264 40 4 family Methanocellaceae 1 0 971 3 570265 12 570266 3 1 genus Methanocella 0 968 1175444 0 291 1 Methanocella conradii species 0 665 species Methanocella arvoryzae 1 1175445 2283796 19 clade 0 3544 0 3202 17 class Thermoplasmata 1 183967 23 2301 2 1611 0 1 Thermoplasmatales order 10 220 0 family 2 46659 0 220 genus 2 2302 50339 Thermoplasma volcanium species 1 0 109 1 Thermoplasma acidophilum species 0 111 2303 2 family 365 0 90142 2 genus 0 365 74968 173 0 Ferroplasma acidiphilum species 1 74969 0 192 1 species Ferroplasma acidarmanus 97393 46630 0 194 family 1 46631 1 genus 194 0 82076 1 Picrophilus torridus species 0 194 1919231 no rank 1 691 0 1054217 0 691 Thermoplasmatales archaeon BRNA1 species 1 1747776 1 139 0 3 1 Cuniculiplasmataceae family 1747777 1 138 0 2 Cuniculiplasma genus 1 137 0 Cuniculiplasma divulgatum species 1 1673428 1234666 0 565 no rank 1 1495144 1 methanogenic archaeon ISO4-H5 species 0 565 1235850 0 1003 5 order 1577788 7 619 0 family Methanomassiliicoccaceae 1 3 1080709 genus 1 0 419 1 species Candidatus Methanomassiliicoccus intestinalis 419 0 1406512 1607807 genus 1 0 193 1577791 193 0 1 species Candidatus Methanoplasma termitum 2517203 0 384 2 family 1291539 29 384 0 2 1 genus Candidatus Methanomethylophilus 1291540 1 Candidatus Methanomethylophilus alvus species 0 355 1803510 0 342 clade 2 379546 2 genus 342 0 1 species Aciduliprofundum boonei 246 0 379547 2633939 96 0 1 no rank 673860 0 96 1 Aciduliprofundum sp. MAR08-339 species 2283794 9773 0 clade 40 0 4193 1 Methanococci class 16 183939 13 0 4180 15 order Methanococcales 1 2182 2 2 2183 6 family Methanococcaceae 1 0 2384 4 genus 0 2127 2184 1 Methanococcus maripaludis species 1320 0 39152 0 225 1 Methanococcus aeolicus species 42879 2188 285 0 1 Methanococcus voltae species 0 297 species Methanococcus vannielii 1 2187 155862 0 255 1 genus species Methanothermococcus okinawensis 1 0 255 155863 8 1 family Methanocaldococcaceae 1794 0 2 196117 1500 0 6 genus 196118 no rank 1 0 211 2641196 644281 1 species Methanocaldococcus sp. FS406-22 0 211 73913 409 0 1 Methanocaldococcus vulcanius species 1301915 1 Methanocaldococcus bathoardescens species 318 0 67760 0 184 species Methanocaldococcus infernus 1 1 Methanocaldococcus jannaschii species 0 183 2190 83171 1 Methanocaldococcus fervens species 195 0 196119 0 292 genus 1 2189 292 0 1 Methanotorris igneus species 1 183925 24 class Methanobacteria 1 5580 0 23 order Methanobacteriales 1 0 5579 4 2158 1 Methanobacteriaceae family 21 0 5367 11 2159 2316 441 0 1 genus 2317 1 Methanosphaera stadtmanae species 0 441 2172 4 2660 0 7 1 Methanobrevibacter genus 1 Methanobrevibacter millerae species 0 551 230361 0 437 1 species Methanobrevibacter ruminantium 83816 no rank 2 0 765 2638681 1609968 Methanobrevibacter sp. YE315 species 1 0 413 224719 0 352 1 Methanobrevibacter sp. AbM4 species 1 Methanobrevibacter smithii species 542 0 2173 294671 0 361 species Methanobrevibacter olleyae 1 460 0 genus 4 145260 0 156 no rank 1 2631116 866790 Methanothermobacter sp. CaT2 species 1 156 0 1 species Methanothermobacter thermautotrophicus 0 152 145262 145263 0 96 species Methanothermobacter marburgensis 1 145261 species Methanothermobacter wolfeii 1 0 56 genus Methanobacterium 1 8 1795 0 1 2160 species Methanobacterium subterraneum 1 310 0 59277 2627676 2 no rank 519 0 409 0 Methanobacterium sp. MZ-A1 species 1 1911685 Methanobacterium sp. MB1 species 1 110 0 1379702 877455 292 0 species Methanobacterium lacus 1 Methanobacterium congolense species 1 152 0 118062 2162 species Methanobacterium formicicum 1 239 0 Methanobacterium paludis species 1 282 0 868131 0 208 1 family 2178 1 genus 0 208 2179 2180 1 Methanothermus fervidus species 208 0 3 183980 8 Archaeoglobi class 1 1197 0 2231 1194 0 7 order 2232 1194 0 7 family 102 0 genus 1 54260 102 0 species Ferroglobus placidus 1 54261 genus 4 706 0 2233 0 210 1 Archaeoglobus sulfaticallidus species 1316941 58290 Archaeoglobus veneficus species 1 0 193 84156 Archaeoglobus profundus species 1 0 118 Archaeoglobus fulgidus species 1 185 0 2234 190818 genus 2 386 0 113653 species Geoglobus ahangari 1 218 0 565033 168 0 Geoglobus acetivorans species 1 40 class Thermococci 1 7415 0 3 183968 2258 24 7412 0 39 1 Thermococcales order 7388 0 38 family Thermococcaceae 1 2259 28 914 0 genus 7 2260 2 no rank 0 298 2629106 1183377 175 0 1 Pyrococcus sp. ST04 species species Pyrococcus sp. NA2 1 123 0 342949 1609559 0 120 species Pyrococcus kukulkanii 1 29292 Pyrococcus abyssi species 1 39 0 0 124 1 species Pyrococcus yayanosii 1008460 2261 180 0 1 species Pyrococcus furiosus Pyrococcus horikoshii species 1 0 153 53953 83867 1 genus 112 0 1 species Palaeococcus pacificus 112 0 971279 6334 0 genus Thermococcus 1 29 2263 80 1505907 Thermococcus eurythermalis species 1 0 140 71997 180 0 species Thermococcus gorgonarius 1 0 179 Thermococcus siculi species 1 72803 55802 0 192 Thermococcus barophilus species 1 2627626 no rank 6 1451 0 1 species Thermococcus sp. 4557 0 396 1042877 2008440 1 Thermococcus sp. 5-4 species 0 277 1674923 128 0 Thermococcus sp. 2319x1 species 1 2016361 1 species Thermococcus sp. EXT12c 284 0 126 0 species Thermococcus sp. P6 1 122420 0 240 Thermococcus sp. AM4 species 1 246969 288 0 1 Thermococcus celer species 2264 1 Thermococcus piezophilus species 0 182 1712654 1 Thermococcus thioreducens species 191 0 277988 Thermococcus barossii species 1 231 0 54077 0 80 Thermococcus chitonophagus species 1 54262 1 Thermococcus litoralis species 200 0 2265 0 234 species Thermococcus sibiricus 1 172049 311400 197 0 species Thermococcus kodakarensis 1 species Thermococcus guaymasensis 1 0 232 110164 582419 Thermococcus paralvinellae species 1 0 185 49899 249 0 1 Thermococcus profundus species 187880 0 283 species Thermococcus radiotolerans 1 342948 0 195 1 Thermococcus onnurineus species 195522 292 0 1 species Thermococcus nautili 1 Thermococcus pacificus species 0 146 71998 0 384 species Thermococcus gammatolerans 1 187878 163003 0 266 1 Thermococcus cleftensis species 53952 species Thermococcus peptonophilus 1 277 0 0 4753 52 clade 1783275 0 46 1 phylum 51967 498845 0 46 1 genus 0 46 species Candidatus Korarchaeum cryptofilum 1 498846 651137 13 phylum 0 1438 651142 0 391 no rank 3 1825023 0 207 2 genus 0 126 1 Candidatus Nitrosotenuis cloacae species 1603555 1 Candidatus Nitrosotenuis sp. AQ6f species 0 81 1846278 genus 1 184 0 1593364 1 Candidatus Nitrosopelagicus brevis species 184 0 1410606 3 1643678 class Nitrososphaeria 1 6 0 524 1968909 137 0 2 order 2 family Candidatus Nitrosocaldaceae 1 0 137 1 1968910 498374 136 0 1 genus 2045011 136 0 Candidatus Nitrosocaldus islandicus species 1 3 Nitrososphaerales order 1 384 0 2 1033996 1033997 2 family 382 0 497726 8 382 0 genus Nitrososphaera 1 2 1034015 1 Nitrososphaera viennensis species 374 0 1 Nitrosopumilales order 4 0 523 2 31932 family 3 521 0 338190 1993653 171 0 1 genus species Candidatus Nitrosomarinus catalina 1 0 171 1898749 350 0 2 genus 338191 1229909 1 species Candidatus Nitrosopumilus sediminis 191 0 1580092 Candidatus Nitrosopumilus adriaticus species 1 159 0 28889 38 phylum 3269 0 1 183924 38 1 class Thermoprotei 3269 0 14 order Thermoproteales 1 0 1003 4 2266 3 2267 8 Thermoproteaceae family 1 502 0 0 172 2 genus 2270 Thermoproteus uzoniensis species 1 84 0 184117 1 species Thermoproteus tenax 88 0 2271 1 genus Vulcanisaeta 3 146 0 1 164450 985052 Vulcanisaeta moutnovskia species 1 0 72 Vulcanisaeta distributa species 1 0 73 164451 76886 0 98 1 genus 0 98 1 species Caldivirga maquilingensis 76887 2276 genus 1 0 83 species Pyrobaculum islandicum 1 83 0 2277 0 497 family Thermofilaceae 1 5 114378 2 2268 genus 4 0 495 152 0 Thermofilum adornatus species 1 1365176 1 species Thermofilum carboxyditrophus 0 162 1483572 81 0 Thermofilum uzonense species 1 1550241 species Thermofilum pendens 1 100 0 2269 0 266 order 3 871006 1 Caldisphaeraceae family 2 136 0 1 255472 1 genus 135 0 200414 135 0 1 Caldisphaera lagunensis species 200415 871007 130 0 family 1 0 130 genus 1 105850 130 0 species Acidilobus saccharovorans 1 242703 8 order 0 1245 2281 118883 0 1245 8 family 2284 3 genus 0 517 2285 88 0 1 Sulfolobus acidocaldarius species 2641160 1 no rank 115 0 1891280 115 0 species Sulfolobus sp. A20 1 43080 314 0 1 Sulfolobus islandicus species 12914 1 genus 177 0 177 0 Acidianus hospitalis species 1 563177 2100760 genus 1 0 141 0 141 Sulfolobus solfataricus species 1 2287 41980 121 0 genus 2 43687 34 0 1 species Metallosphaera sedula 1006005 1 species Metallosphaera cuprina 87 0 69655 genus 1 0 289 1 species Sulfolobus tokodaii 0 289 111955 0 754 1 order Desulfurococcales 12 114380 1 2272 558 0 family 8 54258 0 99 2 genus species Ignicoccus islandicus 1 0 18 54259 81 0 Ignicoccus hospitalis species 1 160233 genus 1 143 0 477695 1200300 0 143 species Thermogladius calderae 1 116 0 2 genus 2273 0 83 species Desulfurococcus amylolyticus 1 94694 33 0 species Desulfurococcus mucosus 1 2275 0 170 genus 2 2279 90 0 Staphylothermus marinus species 1 2280 80 0 Staphylothermus hellenicus species 1 84599 0 30 genus 1 54253 54254 0 30 1 species Thermosphaera aggregans 2307 family 3 0 195 54251 1 genus 48 0 48 0 Pyrolobus fumarii species 1 54252 genus 1 77 0 2308 0 77 species Pyrodictium delaneyi 1 1273541 1 genus 70 0 54247 70 0 1 Hyperthermus butylicus species 54248