members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 31290306 195706 4687 name 0 0 1 0 48504 267 superkingdom 2157 0 50 1 1783276 clade 50 0 phylum 1801631 1 0 50 1 2490204 genus 1 species 1920749 0 50 Candidatus Micrarchaeota archaeon Mia14 215 phylum 28890 0 5 Euryarchaeota 43966 1 2290931 clade 107 25745 0 48 class 224756 0 6 1 13418 Methanomicrobia 570264 order 4 642 1 Methanocellales 11 0 0 631 3 family 570265 3 genus 570266 0 1 631 1 Methanocella 0 476 Methanocella arvoryzae 1 1175445 species 0 154 Methanocella conradii 1 species 1175444 2 0 Methanosarcinales 1 9597 29 94695 order family 143067 4 Methanosaetaceae 682 1 0 7 0 4 1 675 Methanothrix 3 genus 2222 1 species 301375 0 Methanosaeta harundinacea 375 0 Methanothrix soehngenii 296 1 species 2223 2206 family 24 Methanosarcinaceae 8913 1 2 0 1 2220 genus 0 273 0 273 Methanolobus psychrophilus 1 species 420950 2225 genus 3 449 1 Methanococcoides 1 0 species 2226 1 248 Methanococcoides methylutens 0 Methanococcoides burtonii 200 0 species 29291 1 468 0 2175 genus 2 Methanohalophilus mahii 245 0 species 2176 1 223 Methanohalophilus halophilus 0 2177 species 1 0 367 1 genus 101191 species 101192 1 367 Methanomethylovorans hollandica 0 13 2207 genus 14 0 Methanosarcina 1 6597 0 Methanosarcina barkeri 1317 1 2208 species 4 no rank 2644672 0 1876 0 Methanosarcina sp. WWM596 506 1 species 1434103 0 321 Methanosarcina sp. MTP4 1 species 1434100 539 Methanosarcina sp. WH1 0 1434102 species 1 1434099 species 1 510 Methanosarcina sp. Kolksee 0 1 2210 species 0 326 Methanosarcina thermophila 593 Methanosarcina acetivorans 0 species 2214 1 1 418008 species 0 448 Methanosarcina horonobensis 402 Methanosarcina lacustris 0 170861 species 1 628 Methanosarcina mazei 0 species 2209 1 1 species 2215 0 Methanosarcina vacuolata 478 0 Methanosarcina siciliae 515 1 species 38027 1 306 Methanohalobium 1 0 2321 genus 2 1 species 2322 0 Methanohalobium evestigatum 305 451 0 196136 genus 1 0 Methanosalsum zhilinae 451 1 species 39669 14 2191 order 13 0 3173 1 Methanomicrobiales 1 family 196137 0 336 1 genus 2202 0 336 1 2203 species 0 336 Methanospirillum hungatei family 1198451 4 1086 1 Methanoregulaceae 0 8 864 0 395331 genus 2 0 242 Methanoregula boonei 1 species 358766 0 Methanoregula formicica 622 1 882104 species 0 214 1 genus 475087 0 Methanosphaerula palustris 214 1 species 475088 4 0 Methanomicrobiaceae 1425 1 7 2194 family 230355 genus 2 Methanolacinia 1 245 1 0 1 54120 species 0 244 Methanolacinia petrolearia 45989 genus 4 1 1176 Methanoculleus 5 0 species 83986 1 396 Methanoculleus bourgensis 0 species 2198 1 Methanoculleus marisnigri 451 0 2619537 no rank 1 324 0 86622 species 1 Methanoculleus sp. MAB1 324 0 88404 family 1 313 0 0 313 1 2192 genus Methanocorpusculum labreanum 313 0 83984 species 1 0 75 Halobacteria 12327 1 59 class 183963 2235 order 25 5148 1 Halobacteriales 73 0 2236 family 9 1 1910 Halobacteriaceae 6 0 134 0 genus 1656823 1 0 134 Halanaeroarchaeum sulfurireducens 1 1604004 species 1 454 Halalkalicoccus 6 0 332246 genus 2 species 413810 1 Halalkalicoccus jeotgali 448 0 1 genus 1980514 0 326 0 326 Halodesulfurarchaeum formicicum 1 1873524 species 4 2239 genus 5 0 Halobacterium 990 1 1 species 1407499 0 Halobacterium hubeiense 278 0 447 1 2668073 no rank species 751944 1 447 Halobacterium sp. DL1 0 2242 species 1 260 Halobacterium salinarum 0 Haloarculaceae 3165 1 27 0 1963268 family 15 3 genus 146825 0 11 674 1 Halorhabdus 0 430 Halorhabdus utahensis 1 species 146826 233 Halorhabdus tiamatea 0 430914 species 1 0 89 Haloarcula 1220 1 5 genus 2237 species 1932004 1 Haloarcula taiwanensis 218 0 295 0 no rank 2624677 1 0 295 Haloarcula sp. CBA1115 1 species 1592728 0 Haloarcula marismortui 310 1 2238 species 0 308 Haloarcula hispanica 1 species 51589 414 0 genus 203135 1 0 Halomicrobium mukohataei 414 1 57705 species 1 489 Natronomonas 0 5 genus 63743 3 0 Natronomonas moolapensis 233 1 species 416273 species 2257 1 Natronomonas pharaonis 251 0 341 1 Halorientalis 12 0 1073987 genus 2 329 0 no rank 2648975 1 1 1932360 species 0 Halorientalis sp. IM1011 329 0 38 1 3322 Haloferacales 17 order 1644055 8 1644056 family 8 0 Haloferacaceae 1613 1 1 genus 293431 0 257 0 Haloquadratum walsbyi 257 1 293091 species 60846 genus 2 Halogeometricum 1 139 2 0 Halogeometricum borinquense 137 0 species 60847 1 1209 1 Haloferax 0 3 genus 2251 4 2252 species 1 Haloferax mediterranei 283 0 Haloferax volcanii 466 0 2246 species 1 species 35746 1 Haloferax gibbonsii 457 0 11 0 Halorubraceae 1315 1 7 1963271 family genus 1209988 2 Halopenitus 243 1 0 6 237 Halopenitus persicus 0 1048396 species 1 1 593 Halorubrum 0 20 genus 56688 3 1 species 2247 0 315 Halorubrum lacusprofundi 1 29284 species 0 Halorubrum trapanicum 258 1 genus 1644057 0 468 468 Salinigranum rubrum 0 species 755307 1 1 2678336 no rank 0 356 0 356 halophilic archaeon DL31 1 756883 species 16 1644060 order 44 0 3782 1 Natrialbales Natrialbaceae 1 3738 0 24 family 1644061 15 203193 genus 1 391 0 391 Halobiforma lacisalsi 0 species 229731 1 1 genus 2256 0 137 1 species 44930 0 137 Natronobacterium gregoryi 3 genus 121871 0 2 Haloterrigena 648 1 Haloterrigena daqingensis 192 0 588898 species 1 0 454 Haloterrigena turkmenica 1 species 62320 2 genus 29287 0 2 1 414 Natronococcus 1 species 29288 0 412 Natronococcus occultus genus 387342 1 508 0 1 species 387343 0 Halopiger xanaduensis 508 1 genus 1269201 0 378 0 378 1 no rank 2621923 0 378 Salinarchaeum sp. Harcht-Bsk1 1 species 1333523 3 88723 genus 13 0 Natrinema 1 581 300 0 2622230 no rank 1 406552 species 1 Natrinema sp. J7-2 300 0 0 268 Natrinema pellirubrum 1 species 69525 228 0 63742 genus 1 1 13769 species 0 228 Natrialba magadii 353799 genus 1 429 0 429 Halostagnicola larsenii 0 353800 species 1 0 9202 41 2283794 clade Methanobacteria 5374 1 0 5 class 183925 24 Methanobacteriales 5369 1 0 3 order 2158 23 0 160 1 2178 family 2179 genus 1 160 0 160 Methanothermus fervidus 0 2180 species 1 family 2159 21 5206 0 7 2172 genus 4 0 Methanobrevibacter 1 2662 0 Methanobrevibacter smithii 589 1 species 2173 83816 species 1 433 Methanobrevibacter ruminantium 0 0 458 Methanobrevibacter olleyae 1 294671 species 2638681 no rank 2 656 0 224719 species 1 Methanobrevibacter sp. AbM4 307 0 Methanobrevibacter sp. YE315 349 0 species 1609968 1 522 Methanobrevibacter millerae 0 species 230361 1 1 1872 Methanobacterium 3 0 2160 genus 8 0 323 Methanobacterium formicicum 1 2162 species 59277 species 1 221 Methanobacterium subterraneum 0 species 868131 1 Methanobacterium paludis 309 0 118062 species 1 306 Methanobacterium congolense 0 0 298 Methanobacterium lacus 1 species 877455 2 2627676 no rank 0 412 1911685 species 1 233 Methanobacterium sp. MZ-A1 0 1 species 1379702 0 Methanobacterium sp. MB1 179 363 0 2316 genus 1 0 363 Methanosphaera stadtmanae 1 2317 species 5 145260 genus 3 0 Methanothermobacter 309 1 0 125 Methanothermobacter marburgensis 1 145263 species 71 0 2631116 no rank 1 866790 species 1 Methanothermobacter sp. CaT2 71 0 Methanothermobacter thermautotrophicus 40 0 species 145262 1 species 145261 1 Methanothermobacter wolfeii 70 0 183939 class 17 Methanococci 1 3828 2 0 16 order 2182 0 2 3826 1 Methanococcales 0 1599 9 196117 family Methanocaldococcus 1326 1 1 0 196118 genus 7 Methanocaldococcus fervens 201 0 83171 species 1 Methanocaldococcus infernus 148 0 67760 species 1 0 240 1 2641196 no rank 644281 species 1 Methanocaldococcus sp. FS406-22 240 0 Methanocaldococcus jannaschii 220 0 species 2190 1 0 Methanocaldococcus vulcanius 215 1 73913 species 1 1301915 species 0 Methanocaldococcus bathoardescens 301 Methanotorris 1 273 1 0 196119 genus 2 Methanotorris igneus 272 0 2189 species 1 6 family 2183 0 2225 1 1988 Methanococcus 0 2 genus 2184 5 species 39152 1 1293 Methanococcus maripaludis 0 1 species 2188 0 280 Methanococcus voltae 247 Methanococcus aeolicus 0 42879 species 1 0 Methanococcus vannielii 166 1 species 2187 0 237 1 155862 genus 1 species 155863 0 237 Methanothermococcus okinawensis 183980 class 8 885 0 8 2231 order 0 885 8 2232 family 0 885 1 253 Geoglobus 1 0 190818 genus 3 0 Geoglobus ahangari 94 1 species 113653 1 565033 species 0 158 Geoglobus acetivorans 4 2233 genus 0 546 species 58290 1 125 Archaeoglobus veneficus 0 species 2234 1 155 Archaeoglobus fulgidus 0 0 Archaeoglobus profundus 100 1 species 84156 166 Archaeoglobus sulfaticallidus 0 species 1316941 1 1 54260 genus 0 86 1 species 54261 0 Ferroglobus placidus 86 0 3395 19 clade 2283796 183967 class 17 Thermoplasmata 3093 1 8 0 0 1 890 1 Methanomassiliicoccales 6 order 1235850 0 457 2 2517203 family 2 1291539 genus 16 0 1 457 Candidatus Methanomethylophilus 1291540 species 1 441 Candidatus Methanomethylophilus alvus 0 3 family 1577788 0 5 1 432 Methanomassiliicoccaceae 1 1607807 genus 0 144 0 144 Candidatus Methanoplasma termitum 1 species 1577791 283 0 genus 1080709 1 species 1406512 1 283 Candidatus Methanomassiliicoccus intestinalis 0 no rank 1234666 1 507 0 methanogenic archaeon ISO4-H5 507 0 species 1495144 1 order 2301 9 1688 0 0 616 1 1919231 no rank 1054217 species 1 616 Thermoplasmatales archaeon BRNA1 0 family 46659 2 214 0 2302 genus 2 214 0 0 116 Thermoplasma volcanium 1 species 50339 0 Thermoplasma acidophilum 98 1 2303 species 282 1 Cuniculiplasmataceae 0 2 family 1747776 3 2 1747777 genus 4 0 280 1 Cuniculiplasma 1 1673428 species 0 Cuniculiplasma divulgatum 276 0 187 1 46630 family 0 187 1 genus 46631 82076 species 1 Picrophilus torridus 187 0 389 0 90142 family 2 2 74968 genus 0 389 0 155 Ferroplasma acidiphilum 1 species 74969 234 Ferroplasma acidarmanus 0 species 97393 1 0 302 2 clade 1803510 379546 genus 2 302 0 130 0 no rank 2633939 1 673860 species 1 130 Aciduliprofundum sp. MAR08-339 0 Aciduliprofundum boonei 172 0 species 379547 1 39 class 183968 0 4734 39 order 2258 0 6 Thermococcales 4734 1 1 4728 Thermococcaceae 16 0 2259 family 38 29 2263 genus 26 0 1 3903 Thermococcus 1 species 1712654 0 Thermococcus piezophilus 83 582419 species 1 Thermococcus paralvinellae 187 0 species 187880 1 210 Thermococcus radiotolerans 0 Thermococcus barossii 120 0 species 54077 1 Thermococcus profundus 122 0 species 49899 1 1 1505907 species 0 Thermococcus eurythermalis 59 species 55802 1 Thermococcus barophilus 238 0 species 110164 1 109 Thermococcus guaymasensis 0 1 163003 species 0 158 Thermococcus cleftensis 0 80 Thermococcus chitonophagus 1 54262 species 1 277988 species 0 Thermococcus thioreducens 117 154 Thermococcus siculi 0 72803 species 1 1 2264 species 0 Thermococcus celer 168 1 172049 species 0 179 Thermococcus sibiricus species 71997 1 Thermococcus gorgonarius 137 0 1 species 2265 0 199 Thermococcus litoralis 1 342948 species 0 Thermococcus onnurineus 46 1 187878 species 0 Thermococcus gammatolerans 167 1 species 53952 0 Thermococcus peptonophilus 176 0 866 6 no rank 2627626 110 Thermococcus sp. EXT12c 0 2016361 species 1 0 129 Thermococcus sp. 4557 1 1042877 species species 2008440 1 124 Thermococcus sp. 5-4 0 320 Thermococcus sp. AM4 0 246969 species 1 122420 species 1 107 Thermococcus sp. P6 0 1674923 species 1 76 Thermococcus sp. 2319x1 0 1 195522 species 0 120 Thermococcus nautili 71998 species 1 Thermococcus pacificus 49 0 Thermococcus kodakarensis 133 0 311400 species 1 0 728 7 2260 genus 0 30 Pyrococcus abyssi 1 species 29292 80 Pyrococcus horikoshii 0 53953 species 1 0 272 Pyrococcus furiosus 1 species 2261 1609559 species 1 89 Pyrococcus kukulkanii 0 2 2629106 no rank 0 188 0 Pyrococcus sp. NA2 129 1 species 342949 59 Pyrococcus sp. ST04 0 species 1183377 1 0 69 Pyrococcus yayanosii 1 species 1008460 0 81 1 83867 genus 1 species 971279 0 81 Palaeococcus pacificus clade 1783275 51 4488 0 45 0 51967 phylum 1 1 498845 genus 0 45 species 498846 1 Candidatus Korarchaeum cryptofilum 45 0 28889 phylum 40 3120 0 1 3120 Thermoprotei 0 2 class 183924 40 1 0 1 1021 Thermoproteales 13 2266 order family 2267 7 Thermoproteaceae 1 659 0 1 0 203 1 76886 genus 1 76887 species 0 203 Caldivirga maquilingensis 2276 genus 1 79 0 Pyrobaculum islandicum 79 0 2277 species 1 0 182 2 genus 164450 1 species 985052 0 136 Vulcanisaeta moutnovskia Vulcanisaeta distributa 46 0 species 164451 1 genus 2270 2 194 0 Thermoproteus tenax 96 0 species 2271 1 184117 species 1 Thermoproteus uzoniensis 98 0 5 family 114378 0 2 Thermofilaceae 1 361 0 359 4 2268 genus species 2269 1 46 Thermofilum pendens 0 0 Thermofilum adornatus 125 1 species 1365176 1 1550241 species 0 Thermofilum uzonense 52 1 1483572 species 0 136 Thermofilum carboxyditrophus order 871006 3 1 160 Acidilobales 0 1 1 family 871007 0 50 50 0 genus 105850 1 Acidilobus saccharovorans 50 0 species 242703 1 0 109 1 family 255472 109 0 200414 genus 1 1 200415 species 0 Caldisphaera lagunensis 109 15 114380 order 4 0 Desulfurococcales 684 1 0 198 4 family 2307 1 2308 genus 0 89 species 1273541 1 89 Pyrodictium delaneyi 0 2 genus 54251 0 8 Pyrolobus 42 1 species 54252 1 Pyrolobus fumarii 34 0 67 0 genus 54247 1 0 Hyperthermus butylicus 67 1 54248 species 7 0 482 1 Desulfurococcaceae 10 2272 family genus 54258 3 Ignicoccus 57 1 0 1 1 54259 species 0 20 Ignicoccus islandicus species 160233 1 36 Ignicoccus hospitalis 0 477695 genus 1 29 0 0 29 Thermogladius calderae 1 species 1200300 0 127 2 2273 genus 0 Desulfurococcus mucosus 70 1 2275 species 1 species 94694 0 57 Desulfurococcus amylolyticus 210 0 genus 2279 2 0 Staphylothermus hellenicus 139 1 species 84599 0 Staphylothermus marinus 71 1 species 2280 1 54253 genus 0 52 1 54254 species 0 52 Thermosphaera aggregans 0 1253 8 order 2281 1253 0 family 118883 8 genus 69655 1 246 0 1 111955 species 0 246 Sulfolobus tokodaii 110 0 genus 41980 2 1006005 species 1 Metallosphaera cuprina 69 0 0 41 Metallosphaera sedula 1 species 43687 150 0 2100760 genus 1 150 Sulfolobus solfataricus 0 2287 species 1 0 184 1 12914 genus 184 Acidianus hospitalis 0 species 563177 1 genus 2284 3 563 0 371 Sulfolobus islandicus 0 species 43080 1 75 Sulfolobus acidocaldarius 0 2285 species 1 1 no rank 2641160 0 117 1 1891280 species 0 Sulfolobus sp. A20 117 10 phylum 651137 0 1323 3 651142 no rank 0 381 1 genus 1593364 0 185 185 Candidatus Nitrosopelagicus brevis 0 species 1410606 1 196 0 1825023 genus 2 1846278 species 1 100 Candidatus Nitrosotenuis sp. AQ6f 0 96 Candidatus Nitrosotenuis cloacae 0 1603555 species 1 0 380 2 class 1643678 1 order 1968909 0 62 1 family 1968910 0 62 498374 genus 1 62 0 species 2045011 1 62 Candidatus Nitrosocaldus islandicus 0 0 318 1 order 1033996 318 0 1033997 family 1 0 318 1 497726 genus 1 species 1034015 0 Nitrososphaera viennensis 318 5 order 31932 0 562 5 family 338190 0 562 3 338191 genus 2 0 385 1 Nitrosopumilus 0 159 Candidatus Nitrosopumilus sediminis 1 species 1229909 224 Candidatus Nitrosopumilus adriaticus 0 species 1580092 1 Candidatus Nitrosomarinus 1 177 4 0 1993653 genus 2 0 173 Candidatus Nitrosomarinus catalina 1 species 1898749 4388 superkingdom 2 0 61 1 31046096 Bacteria clade 1783257 88 30555 0 phylum 203682 35 12801 0 0 52 Planctomycetia 1 9736 26 class 203683 5 order 2691354 0 1210 781 0 2691357 family 4 362 1 Pirellula 3 0 123 genus 2 species 125 1 Pirellula staleyi 359 0 6 0 1 419 Rhodopirellula 2 265488 genus 0 413 Rhodopirellula baltica 1 species 265606 429 0 family 2691358 1 genus 1676125 1 429 0 1331910 species 1 429 Thermogutta terrifontis 0 3 2691355 order 0 644 0 1 644 1 Gemmataceae 3 family 1914233 2 113 genus 11 0 643 1 Gemmata no rank 2622970 1 632 0 632 Gemmata sp. SH-PL17 0 1630693 species 1 2691356 order 7 2567 0 7 family 1763524 0 49 Isosphaeraceae 1 2567 4 0 Isosphaera 1 540 2 127 genus 0 Isosphaera pallida 536 1 species 128 589 1 Singulisphaera 0 11 genus 466152 2 1 466153 species 0 Singulisphaera acidiphila 578 1389 1 Paludisphaera 0 6 genus 1763521 2 0 Paludisphaera borealis 1383 1 species 1387353 112 order 10 5263 1 Planctomycetales 166 0 9 126 family 29 0 5097 1 Planctomycetaceae 726 0 genus 1649480 1 1 species 120 0 726 Planctopirus limnophila 1 0 Fuerstia 1 738 2 1936111 genus 0 737 Fuerstia marisgermanicae 1 1891926 species 2 genus 1649490 0 6 Rubinisphaera 511 1 1 species 119 0 505 Rubinisphaera brasiliensis 1 3093 Planctomyces 0 26 genus 118 3 0 3067 2 no rank 2648843 832 Planctomyces sp. SH-PL14 0 species 1632864 1 0 Planctomyces sp. SH-PL62 2235 1 species 1636152 0 521 2 2517206 class 2 order 1127829 0 12 Candidatus Brocadiales 521 1 1 family 1127830 0 509 1 genus 380738 0 509 1 species 174633 0 Candidatus Kuenenia stuttgartiensis 509 class 666505 7 Phycisphaerae 2544 1 0 12 1323 0 order 2483366 2 0 1323 2 family 2483367 2 genus 2483368 0 1323 Phycisphaerae bacterium ST-PulAB-D4 670 0 species 1941349 1 1 species 1940790 0 Phycisphaerae bacterium L21-RPul-D3 653 1 1209 Phycisphaerales 0 29 order 666506 4 family 666507 3 1 1180 Phycisphaeraceae 0 5 genus 666508 2 Phycisphaera 1175 1 0 2 Phycisphaera mikurensis 1173 0 547188 species 1 3728 0 phylum 256845 3 1313211 class 3 1 3728 Lentisphaeria 66 0 2 order 278082 0 802 Victivallales 3662 1 no rank 1674876 1 2860 0 0 Victivallales bacterium CCUG 44730 2860 1 species 2094242 phylum 134625 4 748 0 class 1921781 4 Kiritimatiellae 748 1 0 6 3 1921782 order 9 0 Kiritimatiellales 1 742 family 1921783 2 733 0 50 0 1 733 Kiritimatiella 2 1921784 genus 1307763 species 1 683 Kiritimatiella glycovorans 0 21 204428 phylum 0 2224 class 204429 21 2224 1 Chlamydiia 0 10 839 0 order 1963360 6 0 476 2 family 92713 1 genus 83551 0 292 1 83552 species 0 292 Parachlamydia acanthamoebae 184 0 282132 genus 1 184 Candidatus Protochlamydia naegleriophila 0 389348 species 1 family 92712 2 Simkaniaceae 1 165 0 1 34093 genus 1 164 0 1 species 83561 0 Simkania negevensis 164 198 0 family 92714 2 0 1 Waddlia 1 198 2 genus 71666 0 Waddlia chondrophila 197 1 species 71667 14 order 51291 0 2 Chlamydiales 1 1375 0 1 Chlamydiaceae 1 1373 13 family 809 no rank 1113537 12 1372 0 5 0 Chlamydia 1372 1 12 810 genus 0 Chlamydia pneumoniae 101 1 species 83558 0 Chlamydia suis 137 1 species 83559 1 813 species 0 Chlamydia trachomatis 107 83557 species 1 Chlamydia caviae 105 0 0 Chlamydia pecorum 122 1 85991 species 152 Chlamydia psittaci 0 83554 species 1 0 126 Chlamydia gallinacea 1 1457153 species species 83556 1 Chlamydia felis 163 0 0 Chlamydia abortus 49 1 species 83555 Chlamydia muridarum 176 0 species 83560 1 1457141 species 1 Chlamydia avium 129 0 25 phylum 74201 0 11 1 11054 Verrucomicrobia class 134549 3 101 1 Spartobacteria 0 2 0 2 Candidatus Xiphinematobacter 99 1 2 genus 134550 no rank 2648876 1 97 0 species 1704307 1 97 Candidatus Xiphinematobacter sp. Idaho Grape 0 380 0 class 1955630 3 0 380 3 717963 order 0 2 Methylacidiphilaceae 380 1 3 family 717964 2 511745 genus 0 378 0 179 Methylacidiphilum fumariolicum 1 591154 species 199 Methylacidiphilum infernorum 0 species 511746 1 109 0 4486 1 Opitutae 10 414999 class 558 1 Puniceicoccales 6 0 415001 order 3 415002 family 2 552 0 genus 442430 2 Coraliomargarita 1 552 0 16 species 395922 1 536 Coraliomargarita akajimensis 0 64 0 3819 1 Opitutales 6 415000 order 3755 1 Opitutaceae 0 36 family 134623 5 1 278955 no rank 0 1529 794903 species 1 Opitutaceae bacterium TAV5 1529 0 genus 178440 1 904 0 1 species 107709 0 Opitutus terrae 904 2 1961799 genus 36 0 1 1286 Lacunisphaera species 1838286 1 1250 Lacunisphaera limnophila 0 6 203494 class 10 0 Verrucomicrobiae 1 4353 Verrucomicrobiales 1 4343 0 22 order 48461 5 4 family 1647988 0 54 1 4321 Akkermansiaceae 1 4267 Akkermansia 7 0 239934 genus 3 0 Akkermansia muciniphila 2841 1 239935 species Akkermansia glycaniphila 1419 0 species 1679444 1 no rank 417295 2 1723 0 0 925 Verrucomicrobia bacterium IMCC26134 1 species 1637999 2026799 species 1 798 Verrucomicrobia bacterium 0 0 40762 25 32066 phylum class 203490 25 Fusobacteriia 40762 1 0 18 Fusobacteriales 1 40744 0 33 order 203491 24 0 36 1 30529 Fusobacteriaceae 12 family 203492 848 genus 9 1 29379 Fusobacterium 77 0 1526 Fusobacterium mortiferum 0 species 850 1 0 1874 Fusobacterium ulcerans 1 861 species species 851 1 10773 Fusobacterium nucleatum 0 6975 Fusobacterium periodonticum 0 species 860 1 0 Fusobacterium gonidiaformans 1395 1 species 849 2381 Fusobacterium hwasookii 0 species 1583098 1 856 species 1 Fusobacterium varium 3505 0 859 species 1 Fusobacterium necrophorum 873 0 1 1114 Ilyobacter 1 0 167639 genus 2 1 167642 species 0 1113 Ilyobacter polytropus 1129771 family 11 1 10182 Leptotrichiaceae 15 0 Sneathia 1377 1 1 0 168808 genus 2 187101 species 1 Sneathia amnii 1376 0 15 0 Leptotrichia 5060 1 5 32067 genus 3831 0 no rank 2633022 3 0 1028 Leptotrichia sp. oral taxon 498 1 712368 species 1 species 712357 0 1866 Leptotrichia sp. oral taxon 212 1 species 1785996 0 937 Leptotrichia sp. oral taxon 847 1 40542 species 0 1214 Leptotrichia buccalis 0 1709 1 genus 34104 0 Streptobacillus moniliformis 1709 1 species 34105 2 genus 32068 0 2 Sebaldella 2021 1 826 species 1 Sebaldella termitidis 2019 0 1930617 phylum 3 933 0 1962850 class 3 Calditrichae 1 933 2 0 2 order 1962852 0 931 family 1962854 2 Calditrichaceae 931 1 0 5 926 0 187144 genus 1 0 926 Caldithrix abyssi 1 species 187145 14037535 0 1783272 clade 1699 101 phylum 544448 0 5 Tenericutes 42315 1 1 37539 Mollicutes 61 0 31969 class 96 13 186329 order 5 0 Acholeplasmatales 6395 1 12 2146 family 13 0 Acholeplasmataceae 1 6390 Candidatus Phytoplasma 1 1632 83 0 33926 genus 6 85632 species group 1 294 0 1 59748 species 0 294 Candidatus Phytoplasma australiense 996 0 species group 85620 3 0 Aster yellows witches'-broom phytoplasma 266 1 229545 species species 202462 1 Maize bushy stunt phytoplasma 322 0 1 species 100379 0 Onion yellows phytoplasma 408 85630 species group 1 259 0 1 37692 species 0 Candidatus Phytoplasma mali 259 5 2147 genus 94 0 Acholeplasma 1 4745 0 Acholeplasma palmae 1309 1 species 38986 species 61635 1 Acholeplasma brassicae 1030 0 1 2148 species 0 Acholeplasma laidlawii 796 35623 species 1 Acholeplasma oculi 1516 0 20 0 1 17709 Entomoplasmatales 39 186328 order 1 11386 Spiroplasmataceae 0 11 family 2131 24 Spiroplasma 1 11375 497 0 2132 genus 23 1 216945 species 0 398 Spiroplasma syrphidicola 0 Spiroplasma mirum 530 1 2144 species 492 Spiroplasma chrysopicola 0 species 216933 1 2637901 no rank 2 728 0 1914410 species 1 364 Spiroplasma sp. NBRC 100390 0 1 1898044 species 0 Spiroplasma sp. TU-14 364 0 714 Spiroplasma eriocheiris 1 species 315358 1 species 2136 0 497 Spiroplasma monobiae species 216946 1 Spiroplasma turonicum 445 0 1 species 216942 0 Spiroplasma litorale 488 556 Spiroplasma diminutum 0 216936 species 1 0 422 Spiroplasma helicoides 1 216938 species 0 440 Spiroplasma taiwanense 1 2145 species 0 386 Spiroplasma corruscae 1 216934 species 216937 species 1 644 Spiroplasma floricola 0 216935 species 1 Spiroplasma culicicola 600 0 1 species 2137 0 Spiroplasma apis 279 1 2133 species 0 Spiroplasma citri 512 1 species 362837 0 Spiroplasma cantharicola 798 1114980 species 1 Spiroplasma atrichopogonis 551 0 2139 species 1 420 Spiroplasma clarkii 0 0 Spiroplasma kunkelii 522 1 species 47834 456 Spiroplasma sabaudiense 0 216944 species 1 Entomoplasmataceae 6303 1 0 6 family 33925 14 5 genus 46238 0 10 Entomoplasma 1626 1 species 74700 1 221 Entomoplasma freundtii 0 Entomoplasma somnilux 421 0 species 215578 1 0 562 Entomoplasma melaleucae 1 species 81459 0 Entomoplasma luminosum 412 1 214888 species 0 75 Mesoplasma 1 4671 8 genus 46239 1 species 2149 0 Mesoplasma entomophilum 411 0 Mesoplasma chauliocola 472 1 species 216427 0 1125 Mesoplasma lactucae 1 138853 species 851 Mesoplasma florum 0 species 2151 1 1 species 324078 0 Mesoplasma coleopterae 428 species 225999 1 Mesoplasma syrphidae 957 0 0 352 Mesoplasma tabanidae 1 219745 species 0 17 1 13374 Mycoplasmatales 43 order 2085 0 82 Mycoplasmataceae 13357 1 42 family 2092 3872 0 genus 2767358 12 1 2112 species 0 346 Mycoplasma bovigenitalium 0 268 Mycoplasma pulmonis 1 species 2107 0 397 Mycoplasma agalactiae 1 species 2110 Mycoplasma californicum 270 0 2113 species 1 171284 species 1 337 Mycoplasma cynos 0 Mycoplasma arginini 324 0 species 2094 1 Mycoplasma synoviae 179 0 2109 species 1 0 495 Mycoplasma bovis 1 28903 species 48003 species 1 269 Mycoplasma pullorum 0 0 Mycoplasma bovirhinis 241 1 29553 species 1 species 2115 0 364 Mycoplasma fermentans Mycoplasma canis 382 0 species 29555 1 2129 genus 2 822 0 species 134821 1 497 Ureaplasma parvum 0 2130 species 1 325 Ureaplasma urealyticum 0 genus 2093 27 Mycoplasma 8581 1 0 85 0 Mycoplasma penetrans 607 1 species 28227 2099 species 1 282 Mycoplasma hyopneumoniae 0 0 Mycoplasma haemocanis 104 1 species 136241 82 Mycoplasma parvum 0 984991 species 1 species 2118 1 Mycoplasma mobile 355 0 0 279 Mycoplasma hyorhinis 1 2100 species species 2111 1 220 Mycoplasma arthritidis 0 273 Mycoplasma bovoculi 0 species 45362 1 1 species 171632 0 62 Mycoplasma ovis species 2096 1 284 Mycoplasma gallisepticum 0 0 Mycoplasma pneumoniae 39 1 species 2104 0 583 1 no rank 2683645 1 species 1749074 0 583 Mycoplasma sp. (ex Biomphalaria glabrata) Mycoplasma wenyonii 41 0 species 65123 1 Mycoplasma canadense 213 0 29554 species 1 2464 0 656088 species group 3 Mycoplasma leachii 513 0 2105 species 1 species 2095 1 Mycoplasma capricolum 566 0 species 2102 1 1385 Mycoplasma mycoides 0 1 50052 species 0 Mycoplasma crocodyli 331 0 626 Mycoplasma yeatsii 1 species 51365 2128 species 1 Mycoplasma flocculare 416 0 29501 species 1 Mycoplasma haemofelis 55 0 species 2098 1 Mycoplasma hominis 533 0 272 Mycoplasma putrefaciens 0 species 2123 1 Mycoplasma dispar 172 0 86660 species 1 57372 species 1 Mycoplasma suis 139 0 0 Mycoplasma genitalium 64 1 2097 species 0 3486 2 713063 no rank 0 1838 Tenericutes bacterium MZ-XQ 1 1911683 species species 1911684 1 Tenericutes bacterium MO-XQ 1648 0 1285 0 no rank 2799557 2 2 1912503 genus 1 0 1285 1 Candidatus Izimaplasma 1 no rank 2624196 0 1284 1284 Candidatus Izimaplasma sp. HR1 0 species 1541959 1 442 0 no rank 1859062 2 2 262406 genus 39 0 442 1 Thermobaculum Thermobaculum terrenum 403 0 species 166501 1 0 79 Actinobacteria 2789066 1 646 phylum 201174 593 class 1760 0 6231 2662051 1 Actinobacteria 11 0 Catenulisporales 2134 1 4 414714 order 40 0 Catenulisporaceae 1 2123 3 414877 family 414878 genus 2 Catenulispora 2083 1 18 0 1 304895 species 0 2065 Catenulispora acidiphila 85009 order 33 Propionibacteriales 1 23872 108 0 188 0 Propionibacteriaceae 1 15484 19 31957 family 0 6 Microlunatus 768 1 2 genus 29404 29405 species 1 Microlunatus phosphovorus 762 0 1 2542 Propionibacterium 0 54 genus 1743 3 Propionibacterium freudenreichii 2000 0 1744 species 1 no rank 2608905 1 488 0 1 species 671223 0 488 Propionibacterium sp. oral taxon 193 1277 0 genus 2801844 1 1 species 1750 0 Pseudopropionibacterium propionicum 1277 0 2 Acidipropionibacterium 1348 1 2 genus 1912215 1 species 1748 0 Acidipropionibacterium acidipropionici 1346 1 2673 Cutibacterium 0 6 genus 1912216 4 0 Cutibacterium granulosum 506 1 species 33011 Cutibacterium acnes 1011 0 1747 species 1 0 Cutibacterium avidum 1150 1 species 33010 4726 1 Tessaracoccus 0 13 genus 72763 5 0 Tessaracoccus aquimaris 1403 1 1332264 species 1 species 399497 0 1195 Tessaracoccus flavescens 1 1610493 species 0 Tessaracoccus flavus 961 no rank 2635419 1 1154 0 0 1154 Tessaracoccus sp. T2.5-30 1 1909732 species 1962 0 203133 genus 1 1 2633994 no rank 0 1962 species 1871034 1 1962 Propionimicrobium sp. Marseille-P3275 0 family 85015 13 1 8280 Nocardioidaceae 0 162 2 genus 182639 0 61 1537 1 Kribbella 0 Kribbella flavida 1476 1 species 182640 Pimelobacter 1165 1 9 0 2044 genus 2 Pimelobacter simplex 1156 0 species 2045 1 genus 1839 4 Nocardioides 1 3410 0 50 0 1427 1 2615069 no rank species 196162 1 1427 Nocardioides sp. JS614 0 1 species 450734 0 918 Nocardioides dokdonensis 1015 Nocardioides sp. 78 0 species 2045452 1 26 0 Aeromicrobium 1 803 2 2040 genus Aeromicrobium erythreum 777 0 2041 species 1 1 1203 Micropruina 0 2 genus 116071 2 1 species 75385 0 Micropruina glycogenica 1201 2 order 1643683 0 230 2 family 85032 0 230 genus 28048 2 Acidothermus 230 1 0 1 229 Acidothermus cellulolyticus 0 species 28049 1 85013 order 7 Frankiales 4441 1 21 0 1 4420 Frankiaceae 0 86 family 74712 6 genus 1854 5 Frankia 1 4334 0 60 0 1158 1 no rank 2632575 1 298653 species 0 1158 Frankia sp. EAN1pec species 106370 1 621 Frankia casuarinae 0 species 298654 1 Frankia inefficax 1279 0 0 1216 Frankia alni 1 species 1859 85014 order 4 Glycomycetales 1 1167 4 0 85034 family 3 Glycomycetaceae 1 1163 44 0 2 genus 283810 0 4 1 1119 Stackebrandtia Stackebrandtia nassauensis 1115 0 283811 species 1 2172486 1 Bifidobacteriales 0 139 order 85004 25 9040 0 2172347 1 Bifidobacteriaceae 24 31953 family 19 1678 genus 2732 0 1 2160374 Bifidobacterium 1 1687 species 0 653 Bifidobacterium coryneforme Bifidobacterium breve 87678 0 1685 species 1 1465 Bifidobacterium asteroides 0 1684 species 1 669668 Bifidobacterium longum 0 species 216816 1 Bifidobacterium thermophilum 1910 0 species 33905 1 1 species 1691 0 701 Bifidobacterium indicum species 158787 1 Bifidobacterium scardovii 3699 0 1 1689 species 0 Bifidobacterium dentium 6705 0 957 Bifidobacterium actinocoloniiforme 1 species 638619 1686 species 2 335601 1 Bifidobacterium catenulatum 100878 0 0 234723 Bifidobacterium kashiwanohense 1 subspecies 630129 1680 species 1 Bifidobacterium adolescentis 67650 0 Bifidobacterium pseudocatenulatum 914557 0 28026 species 1 0 47617 Bifidobacterium bifidum 1 species 1681 Bifidobacterium angulatum 12331 0 1683 species 1 Bifidobacterium pseudolongum 2748 0 1694 species 1 0 1825 Bifidobacterium choerinum 1 35760 species 28025 species 1 Bifidobacterium animalis 1877 0 1 196082 genus 0 964 78258 species 1 964 Parascardovia denticolens 0 1 196081 genus 0 585 585 Scardovia inopinata 0 species 78259 1 0 2 Gardnerella 1384 1 2 genus 2701 0 Gardnerella vaginalis 1382 1 2702 species 19 order 2037 0 21 1 28894 Actinomycetales 1 28873 Actinomycetaceae 0 4910 family 2049 18 2529408 genus 1 2874 0 1 species 52773 0 2874 Actinomyces meyeri genus 28263 1 593 0 593 Arcanobacterium haemolyticum 0 species 28264 1 2103 1 Trueperella 0 4 genus 1069494 2 1 species 1661 0 Trueperella pyogenes 2099 1 2978 Mobiluncus 0 121 genus 2050 2 species 2051 1 2857 Mobiluncus curtisii 0 1654 genus 9 Actinomyces 14852 1 163 0 1852377 species 1 5155 Actinomyces pacaensis 0 3 2609248 no rank 0 4099 species 712122 1 1470 Actinomyces sp. oral taxon 414 0 1 2081702 species 0 Actinomyces sp. oral taxon 897 1387 0 1242 Actinomyces sp. Chiba101 1 1851395 species species 544580 1 2578 Actinomyces oris 0 1 species 111015 0 Actinomyces radicidentis 1523 species 1912795 1 Actinomyces sp. VUL4_3 292 0 0 Actinomyces gaoshouyii 1042 1 species 1960083 1 0 1 563 Actinotignum 2 1653174 genus 0 Actinotignum schaalii 562 1 59505 species 82 order 85011 0 261 1 118326 Streptomycetales 81 family 2062 0 956 Streptomycetaceae 1 118065 5 2063 genus 87 0 Kitasatospora 1 7527 2066 species 1 Kitasatospora setae 2110 0 0 1336 Kitasatospora albolonga 1 68173 species species 1894 1 Kitasatospora aureofaciens 1715 0 1 no rank 2633591 0 2279 2279 Kitasatospora sp. MMS16-BH015 0 species 2018025 1 75 1883 genus 3852 0 1 109582 Streptomyces 1 species 1950 0 913 Streptomyces peucetius 1 species 1907 0 Streptomyces glaucescens 1036 0 1790 Streptomyces puniciscabiei 1 species 164348 1 193462 species 0 1111 Streptomyces niveus 1333 Streptomyces griseochromogenes 0 species 68214 1 no rank 2593676 24 30890 0 2094021 species 1 1157 Streptomyces sp. WAC00288 0 0 1393 Streptomyces sp. fd1-xmd 1 species 1812480 1 species 1265601 0 Streptomyces sp. PAMC 26508 1007 species 1837283 1 962 Streptomyces sp. S8 0 1 species 1649184 0 Streptomyces sp. CFMR 7 1148 Streptomyces sp. CdTB01 1557 0 species 1725411 1 species 1984801 1 931 Streptomyces sp. CLI2509 0 species 2059884 1 1547 Streptomyces sp. CMB-StM0423 0 0 Streptomyces sp. SirexAA-E 911 1 862751 species 1 206662 species 0 Streptomyces sp. FR-008 1438 0 1611 Streptomyces sp. RTd22 1 1841249 species 1561022 species 1 Streptomyces sp. CCM_MD2014 1299 0 0 Streptomyces sp. CNQ-509 1240 1 444103 species 1 2135430 species 0 1345 Streptomyces sp. P3 species 1262452 1 1759 Streptomyces sp. 769 0 species 1751294 1 Streptomyces sp. 4F 1146 0 Streptomyces sp. Mg1 1514 0 species 465541 1 1972846 species 1 1091 Streptomyces sp. Sge12 0 1 species 1964449 0 Streptomyces sp. 3211 1357 1 1961713 species 0 Streptomyces sp. MOE7 1325 1638 Streptomyces sp. M56 0 species 1495638 1 1 species 1849967 0 1403 Streptomyces sp. SAT1 0 Streptomyces sp. TN58 1158 1 species 234612 0 Streptomyces sp. Tue 6075 953 1 1661694 species 0 1349 Streptomyces violaceoruber 1 1935 species species 1616117 1 Streptomyces formicae 993 0 1 species 1901 0 1313 Streptomyces clavuligerus 0 Streptomyces avermitilis 1100 1 species 33903 1 379067 species 0 Streptomyces bingchenggensis 2266 1268 Streptomyces cyaneogriseus 0 species 68192 1 species 29303 1 1909 Streptomyces cattleya 0 1322 Streptomyces xiamenensis 0 408015 species 1 1577 Streptomyces autolyticus 0 75293 species 1 species 1915 1 Streptomyces lincolnensis 1778 0 Streptomyces pristinaespiralis 1335 0 38300 species 1 1447 Streptomyces malaysiensis 0 92644 species 1 1 species 285473 0 1015 Streptomyces rubrolavendulae 1273 Streptomyces gilvosporeus 0 553510 species 1 1 species 1940 0 Streptomyces albireticuli 1191 1 146923 species 0 Streptomyces parvulus 1882 0 2567 Streptomyces pactum 1 species 68249 1 species 1912 0 Streptomyces hygroscopicus 3582 1493 Streptomyces alboflavus 0 67267 species 1 1 species 1916 0 1434 Streptomyces lividans 1926 species 1 1448 Streptomyces reticuli 0 Streptomyces alfalfae 1329 0 species 1642299 1 Streptomyces pratensis 862 0 1169025 species 1 1 1038928 species 0 1095 Streptomyces xinghaiensis 1 1889 species 0 1190 Streptomyces ambofaciens 1 species 362257 0 Streptomyces vietnamensis 1440 Streptomyces albulus 1470 0 species 68570 1 1 1930 species 0 1494 Streptomyces scabiei 1 68202 species 0 840 Streptomyces fulvissimus 0 2760 2 1477431 species group 1329 Streptomyces coelicolor 0 1902 species 1 1 42239 species 0 Streptomyces sampsonii 1431 0 Streptomyces noursei 1438 1 species 1971 1 1888 species 0 2908 Streptomyces albus 0 2518 2 629295 species group species subgroup 1482558 1 1226 0 0 Streptomyces globisporus 1226 1 1908 species 0 1292 1 species subgroup 1482596 1 1911 species 0 Streptomyces griseus 1292 1072 Streptomyces collinus 0 42684 species 1 species 54571 1 Streptomyces venezuelae 2244 0 1 species 1914 0 1251 Streptomyces lavendulae 0 Streptomyces violaceusniger 1611 1 species 68280 47763 species 1 3705 Streptomyces lydicus 0 0 1335 Streptomyces leeuwenhoekii 1 species 1437453 1116 Streptomyces sp. S10(2016) 0 species 1783515 1 species 1355015 1 Streptomyces pluripotens 997 0 1530 Streptomyces chartreusis 0 species 1969 1 2049881 species 1 Streptomyces sp. XZHG99 910 0 no rank 52018 1 199 0 1 1650658 species 0 Actinobacteria bacterium IMCC26256 199 56 0 13181 1 Streptosporangiales 15 85012 order 90 0 Nocardiopsaceae 1 5392 6 83676 family 4 2013 genus 61 0 Nocardiopsis 4666 1 0 Nocardiopsis alba 1289 1 species 53437 Nocardiopsis gilva 1570 0 species 280236 1 Nocardiopsis dassonvillei 1746 0 species 2014 1 636 0 83677 genus 1 0 636 Thermobifida fusca 1 2021 species 5 2004 family 68 0 1 5659 Streptosporangiaceae 0 23 Nonomuraea 1 3291 2 genus 83681 1 no rank 2593643 0 3268 1909395 species 1 Nonomuraea sp. ATCC 55076 3268 0 6 0 1 2300 Streptosporangium 2 2000 genus Streptosporangium roseum 2294 0 2001 species 1 15 0 1 2074 Thermomonosporaceae 3 2012 family genus 2019 2 Thermomonospora 1 2059 0 47 Thermomonospora curvata 2012 0 species 2020 1 942 0 no rank 1643818 2 147067 genus 2 942 1 Thermobispora 5 0 species 2006 1 Thermobispora bispora 937 0 85007 order 162 Corynebacteriales 117595 1 842 0 family 1762 56 1 42246 Mycobacteriaceae 0 212 3040 0 genus 670516 5 Mycobacterium saopaulense 548 0 1578165 species 1 0 447 Mycobacterium chelonae 1 1774 species Mycobacterium abscessus 1200 0 36809 species 1 1 1520670 species 0 Mycobacterium stephanolepidis 382 0 Mycobacterium immunogenum 463 1 species 83262 34 1763 genus 1689 0 23477 1 Mycobacterium 944 Mycobacterium dioxanotrophicus 0 species 482462 1 1 species 1768 0 Mycobacterium kansasii 819 1 2249310 species group 0 837 1 species 722731 0 837 Mycobacterium shigaense 723 Mycobacterium marinum 0 1781 species 1 4923 0 120793 species group 8 1 species 339268 0 972 Mycobacterium colombiense 0 Mycobacterium paraintracellulare 245 1 1138383 species 1 species 701042 0 Mycobacterium marseillense 591 species 1767 4 Mycobacterium intracellulare 1294 1 0 299 Mycobacterium chimaera 551 0 subspecies 222805 1 0 228 Mycobacterium yongonense 1 1203599 subspecies 35617 subspecies 1 216 Mycobacterium indicus pranii 0 1 species 1764 0 Mycobacterium avium 1821 29311 species 1 Mycobacterium haemophilum 574 0 1769 species 1 276 Mycobacterium leprae 0 1783 0 77643 species group 4 1 species 78331 0 Mycobacterium canettii 436 Mycobacterium tuberculosis 1 1347 0 517 species 1773 3 1 1765 biotype 0 430 Mycobacterium bovis Mycobacterium africanum 400 0 biotype 33894 1 486 Mycobacterium liflandii 0 261524 species 1 Mycobacterium ulcerans 619 0 1809 species 1 0 9804 13 2642494 no rank 873 Mycobacterium sp. EPa45 0 species 1545728 1 0 Mycobacterium sp. djl-10 1275 1 1879023 species 0 Mycobacterium sp. KMS 544 1 species 189918 1 species 1273687 0 838 Mycobacterium sp. VKM Ac-1817D 1 species 1682113 0 949 Mycobacterium sp. YC-RL4 0 Mycobacterium sp. QIA-37 532 1 1561223 species 0 944 Mycobacterium sp. JS623 1 species 212767 1920667 species 1 817 Mycobacterium sp. WY10 0 1 2051552 species 0 Mycobacterium sp. PYR15 841 species 164756 1 Mycobacterium sp. MCS 523 0 0 Mycobacterium sp. NRRL B-3805 990 1 1570328 species 0 Mycobacterium sp. JLS 536 1 species 164757 1 species 1168287 0 142 Mycobacterium sp. MOTT36Y 1073531 genus 2 1585 0 697 Mycobacterium terrae 0 1788 species 1 Mycobacterium sinense 888 0 875328 species 1 697025 genus 1 394 0 Hoyosella subflava 394 0 639313 species 1 0 13538 13 1866885 genus 1 species 1810 0 Mycobacterium vaccae 971 1280 Mycobacterium aurum 0 1791 species 1 36814 species 1 702 Mycobacterium rhodesiae 0 1 species 1804 0 1014 Mycobacterium gilvum species 1766 1 892 Mycobacterium fortuitum 0 0 Mycobacterium smegmatis 1602 1 species 1772 0 Mycobacterium neoaurum 990 1 species 1795 Mycobacterium litorale 844 0 758802 species 1 species 1800 1 957 Mycobacterium chubuense 0 893 Mycobacterium thermoresistibile 0 species 1797 1 110539 species 1 875 Mycobacterium vanbaalenii 0 Mycobacterium goodii 1289 0 species 134601 1 species 1771 1 1229 Mycobacterium phlei 0 Dietziaceae 1128 1 11 0 85029 family 4 37914 genus 3 Dietzia 1 1117 17 0 0 641 1 2617939 no rank 641 Dietzia sp. oral taxon 368 0 species 712270 1 1 species 499555 0 459 Dietzia timorensis 85028 family 4 1938 1 Tsukamurellaceae 12 0 0 40 Tsukamurella 1 1926 3 genus 2060 1106 Tsukamurella tyrosinosolvens 0 57704 species 1 0 Tsukamurella paurometabola 780 1 2061 species 373 0 697024 no rank 2 373 1 Lawsonella 10 0 1847725 genus 2 Lawsonella clevelandensis 363 0 1528099 species 1 Corynebacteriaceae 1 37383 432 0 1653 family 52 36951 1 Corynebacterium 1149 0 1716 genus 51 1 species 349751 0 816 Corynebacterium marinum 1 575200 species 0 622 Corynebacterium maris 1 species 191493 0 859 Corynebacterium sphenisci species 258224 1 434 Corynebacterium resistens 0 2624378 no rank 2 1037 0 species 702967 1 560 Corynebacterium sp. NML98-0116 0 0 477 Corynebacterium sp. ATCC 6931 1 1487956 species 1652495 species 1 Corynebacterium crudilactis 366 0 species 1719 1 442 Corynebacterium pseudotuberculosis 0 0 976 Corynebacterium falsenii 1 108486 species Corynebacterium simulans 1059 0 146827 species 1 92706 species 1 436 [Brevibacterium] flavum 0 0 Corynebacterium glutamicum 875 1 1718 species Corynebacterium efficiens 1044 0 species 152794 1 1 161879 species 0 Corynebacterium kroppenstedtii 400 1 225326 species 0 Corynebacterium halotolerans 1273 1 species 1717 0 Corynebacterium diphtheriae 602 161899 species 1 617 Corynebacterium singulare 0 species 1050174 1 272 Corynebacterium epidermidicanis 0 species 1072256 1 Corynebacterium uterequi 695 0 38305 species 1 Corynebacterium vitaeruminis 1803 0 species 65058 1 Corynebacterium ulcerans 480 0 0 664 Corynebacterium glyciniphilum 1 species 1404244 Corynebacterium doosanense 750 0 species 1121358 1 28028 species 1 Corynebacterium flavescens 412 0 1 species 156978 0 Corynebacterium imitans 694 Corynebacterium phocae 425 0 species 161895 1 0 1486 Corynebacterium urealyticum 1 species 43771 752 Corynebacterium aurimucosum 0 169292 species 1 608 Corynebacterium callunae 0 species 1721 1 Corynebacterium humireducens 951 0 1223514 species 1 694 Corynebacterium terpenotabidum 0 species 89154 1 625 Corynebacterium atypicum 0 191610 species 1 136857 species 1 562 Corynebacterium testudinoris 0 401472 species 1 Corynebacterium ureicelerivorans 491 0 species 43770 1 2037 Corynebacterium striatum 0 0 655 Corynebacterium glaucum 1 species 187491 721 Corynebacterium camporealensis 0 161896 species 1 1 species 1697 0 Corynebacterium ammoniagenes 615 1 42817 species 0 Corynebacterium argentoratense 471 1 35757 species 0 296 Corynebacterium cystitidis species 1705 1 623 Corynebacterium stationis 0 503 Corynebacterium deserti 0 species 1408191 1 1 species 1230998 0 1053 Corynebacterium frankenforstense 0 144 Corynebacterium kutscheri 1 species 35755 1 571915 species 0 325 Corynebacterium mustelae 1727 species 1 Corynebacterium variabile 936 0 Corynebacterium aquilae 733 0 species 203263 1 Corynebacterium casei 535 0 160386 species 1 672 Corynebacterium lactis 0 1231000 species 1 38289 species 1 1261 Corynebacterium jeikeium 0 3 family 316606 0 2 1 369 Segniliparaceae 2 286801 genus 21 0 Segniliparus 367 1 1 species 286802 0 Segniliparus rotundus 346 9 family 85026 0 54 1 5394 Gordoniaceae genus 2053 8 Gordonia 5340 1 0 88 Gordonia iterans 721 0 species 1004901 1 1413 0 2657482 no rank 2 species 2059875 1 570 Gordonia sp. YC-JH1 0 0 843 Gordonia sp. KTR9 1 337191 species 835 Gordonia phthalatica 0 species 1136941 1 Gordonia terrae 775 0 2055 species 1 Gordonia bronchialis 674 0 2054 species 1 1 species 84595 0 834 Gordonia polyisoprenivorans 31 family 85025 0 242 Nocardiaceae 1 27922 1817 genus 7 Nocardia 1 11339 147 0 species 455432 1 1725 Nocardia terpenica 0 species 37330 1 1352 Nocardia nova 0 Nocardia seriolae 1788 0 species 37332 1 species 37326 1 2311 Nocardia brasiliensis 0 Nocardia cyriacigeorgica 2671 0 135487 species 1 1 species 37329 0 1345 Nocardia farcinica 768 0 Rhodococcus 16341 1 23 1827 genus 1 1828 species 0 Rhodococcus fascians 612 12 192944 no rank 0 6901 979 Rhodococcus sp. WB1 0 1033922 species 1 0 339 Rhodococcus sp. BH4 1 species 1807790 Rhodococcus sp. 008 334 0 species 1723645 1 0 Rhodococcus sp. PBTS 1 792 1 species 1653478 0 Rhodococcus sp. MTM3W5.2 599 1 species 1805827 1 species 1570939 0 Rhodococcus sp. 2G 517 Rhodococcus sp. B7740 718 0 1564114 species 1 Rhodococcus sp. PBTS 2 625 0 1653479 species 1 Rhodococcus sp. p52 537 0 935199 species 1 species 1727214 1 527 Rhodococcus sp. H-CA8f 0 447 Rhodococcus sp. YL-1 0 species 1045808 1 Rhodococcus sp. WMMA185 487 0 species 679318 1 Rhodococcus erythropolis 613 0 1833 species 1 1 334542 species 0 Rhodococcus qingshengii 390 1 37919 species 0 Rhodococcus opacus 2267 0 Rhodococcus pyridinivorans 552 1 103816 species 132919 species 1 1092 Rhodococcus jostii 0 650 Rhodococcus hoagii 0 species 43767 1 191292 species 1 Rhodococcus aetherivorans 948 0 1 1830 species 0 Rhodococcus ruber 986 562 Rhodococcus rhodochrous 0 1829 species 1 20 order 85008 0 23 Micromonosporales 21544 1 367 0 Micromonosporaceae 21521 1 19 28056 family 1 4917 Plantactinospora 0 93 genus 673534 4 2631981 no rank 3 4824 0 1557 Plantactinospora sp. BB1 0 2071627 species 1 1 species 2024580 0 1792 Plantactinospora sp. KBS50 0 Plantactinospora sp. BC1 1475 1 2108470 species 182 0 Micromonospora 4822 1 4 1873 genus 1786 0 no rank 2617518 1 1 species 648999 0 Micromonospora sp. L5 1786 0 1518 Micromonospora aurantiaca 1 species 47850 1336 Verrucosispora maris 0 species 1003110 1 215 0 9625 1 Actinoplanes 6 1865 genus 5983 0 no rank 2626549 3 1 species 2033844 0 1884 Actinoplanes sp. SE50 1884 Actinoplanes sp. SE50/110 0 134676 species 1 1 species 649831 0 Actinoplanes sp. N902-109 2215 Actinoplanes missouriensis 1678 0 species 1866 1 1 196914 species 0 1749 Actinoplanes friuliensis 1 84593 genus 0 Verrucosispora 2 0 21 1 1788 Salinispora 3 genus 168694 1 168697 species 0 Salinispora arenicola 966 0 Salinispora tropica 801 1 168695 species 42 85010 order 70 0 40364 1 Pseudonocardiales 2070 family 41 Pseudonocardiaceae 40294 1 592 0 8 genus 1847 0 188 Pseudonocardia 8394 1 species 240495 1 Pseudonocardia dioxanivorans 1145 0 6 2619320 no rank 0 7061 445576 species 1 Pseudonocardia sp. AL041005-10 1251 0 1641402 species 1 1106 Pseudonocardia sp. HH130629-09 0 0 Pseudonocardia sp. EC080625-04 1134 1 1096868 species 1 1096856 species 0 1315 Pseudonocardia sp. EC080619-01 885 Pseudonocardia sp. HH130630-07 0 1690815 species 1 1 1688404 species 0 1370 Pseudonocardia sp. EC080610-09 110 0 Actinoalloteichus 5562 1 6 65496 genus 2299 0 2644606 no rank 2 1019 Actinoalloteichus sp. AHMU CJ021 0 2072503 species 1 species 1612551 1 Actinoalloteichus sp. GBA129-24 1280 0 897 Actinoalloteichus hymeniacidonis 0 species 340345 1 1027 Actinoalloteichus hoggarensis 0 1470176 species 1 1229 Actinoalloteichus sp. ADI127-7 0 1612552 species 1 genus 1835 2 Saccharopolyspora 1836 1 0 17 species 1836 1 Saccharopolyspora erythraea 1819 0 2071 genus 2 1 1707 Saccharothrix 3 0 103731 species 1 1704 Saccharothrix espanaensis 0 172 0 Amycolatopsis 1 9927 7 1813 genus no rank 2618356 2 2685 0 0 Amycolatopsis sp. AA4 1294 1 1896961 species 1 1911175 species 0 Amycolatopsis sp. BJA-103 1391 1335 Amycolatopsis methanolica 0 1814 species 1 species 31958 1 2564 Amycolatopsis orientalis 0 33910 species 1 1874 Amycolatopsis mediterranei 0 1297 Amycolatopsis japonica 0 208439 species 1 genus 674734 2 Alloactinosynnema 1 1272 0 16 0 1256 1 2636053 no rank 1 1653480 species 0 Alloactinosynnema sp. L-07 1256 1 538 Saccharomonospora 0 1 genus 1851 2 1852 species 1 Saccharomonospora viridis 537 0 genus 2029 2 Kibdelosporangium 1 1583 0 3 species 860235 1 Kibdelosporangium phytohabitans 1580 0 genus 43356 2 1 2304 Kutzneria 0 6 Kutzneria albida 2298 0 43357 species 1 3 genus 40566 0 51 Actinosynnema 1 4293 species 40567 1 2032 Actinosynnema mirum 0 42197 species 1 2210 Actinosynnema pretiosum 0 genus 165301 2 Lentzea 1 1553 0 14 0 Lentzea guizhouensis 1539 1 species 1586287 2 142577 genus 3 0 1 733 Prauserella 730 Prauserella marina 0 530584 species 1 3 order 622452 0 1508 3 family 83778 0 26 1508 1 Kineosporiaceae genus 33981 2 1482 1 Kineococcus 0 6 131568 species 1 1476 Kineococcus radiotolerans 0 Nakamurellales 1673 1 11 0 1643684 order 4 Nakamurellaceae 1 1662 53 0 85031 family 3 Nakamurella 1609 1 0 13 genus 53460 2 0 1596 Nakamurella multipartita 1 53461 species 0 8 Geodermatophilales 3941 1 8 order 1643682 72 0 1 3933 Geodermatophilaceae 7 85030 family 0 15 1 1334 Geodermatophilus 2 genus 1860 1 species 1861 0 Geodermatophilus obscurus 1319 genus 38501 2 Blastococcus 1 632 0 5 1 species 138336 0 Blastococcus saxobsidens 627 Modestobacter 1 1895 67 0 88138 genus 2 1828 Modestobacter marinus 0 species 477641 1 143 85006 order 881 0 Micrococcales 100254 1 3 125316 family 2 0 Beutenbergiaceae 601 1 599 1 Beutenbergia 0 3 genus 84756 2 1 84757 species 0 596 Beutenbergia cavernae 2 85018 family 19 0 1 480 Dermatophilaceae 1862 genus 1 461 0 0 Dermatophilus congolensis 461 1 1863 species 29 0 Sanguibacteraceae 1 694 3 145360 family 2 60919 genus 1 0 Sanguibacter 665 1 664 Sanguibacter keddieii 0 species 60920 1 7 0 1196 1 Brevibacteriaceae 3 85019 family 2 genus 1696 0 4 1 1189 Brevibacterium 0 1185 Brevibacterium linens 1 1703 species family 85021 9 1 4067 Intrasporangiaceae 0 25 45 0 Serinicoccus 1 1251 2 265976 genus Serinicoccus sp. JLT9 1206 0 1758689 species 1 1 1284 Arsenicicoccus 0 15 genus 267408 2 1 no rank 2663846 0 1269 species 1658671 1 1269 Arsenicicoccus sp. oral taxon 190 0 Janibacter 973 1 16 0 53457 genus 2 0 Janibacter indicus 957 1 species 857417 0 5 534 1 Intrasporangium 2 genus 53357 1 species 53358 0 Intrasporangium calvum 529 577468 no rank 2 134 0 2 genus 2038 0 1 134 1 Tropheryma Tropheryma whipplei 133 0 species 2039 1 Microbacteriaceae 1 26699 290 0 85023 family 46 6 1573 genus 200 0 1 3859 Clavibacter 840 0 3659 1 Clavibacter michiganensis 5 28447 species 623 Clavibacter nebraskensis 0 31963 subspecies 1 0 Clavibacter insidiosus 677 1 subspecies 33014 1 subspecies 31964 0 814 Clavibacter sepedonicus 0 705 Clavibacter capsici 1 subspecies 1874630 1 2477 Cryobacterium 0 21 genus 69578 3 1265 0 no rank 2649013 1 1265 Cryobacterium sp. LW097 0 species 1978566 1 0 1191 Cryobacterium arcticum 1 species 670052 genus 2034 4 Curtobacterium 2468 1 0 59 257496 no rank 2 1572 0 1 1905847 species 0 Curtobacterium sp. BH-2-1-1 747 species 1561023 1 825 Curtobacterium sp. MR_MD2014 0 837 Curtobacterium pusillum 0 species 69373 1 1 700 Cnuibacter 0 1 genus 1759331 2 0 699 Cnuibacter physcomitrellae 1 species 1619308 Rathayibacter 804 1 12 0 33886 genus 3 0 Rathayibacter toxicus 279 1 145458 species species 33888 1 Rathayibacter tritici 513 0 242 0 Microbacterium 1 10506 14 33882 genus 0 Microbacterium chocolatum 648 1 84292 species no rank 2609290 8 6123 0 0 Microbacterium sp. 1.5R 504 1 1916917 species 1 1906742 species 0 826 Microbacterium sp. BH-3-3-3 1714373 species 1 Microbacterium sp. No. 7 949 0 624 Microbacterium sp. TPU 3598 0 1938334 species 1 1 367477 species 0 Microbacterium sp. XT11 647 1 2103230 species 0 Microbacterium sp. str. 'China' 987 Microbacterium sp. CGR1 558 0 1696072 species 1 0 Microbacterium sp. PAMC 28756 1028 1 species 1795053 1 species 300019 0 Microbacterium paludicola 732 0 720 Microbacterium hominis 1 species 162426 0 947 Microbacterium aurum 1 species 36805 1094 Microbacterium testaceum 0 species 2033 1 324 0 1655488 no rank 2 0 324 2 clade 1655489 genus 529883 2 324 0 Rhodoluna lacicola 181 0 529884 species 1 0 143 Candidatus Rhodoluna planktonica 1 species 535712 1 genus 1434032 0 202 1 1159327 species 0 202 Pontimonas salivibrio 33877 genus 2 Agromyces 1 995 16 0 1 species 453304 0 Agromyces aureus 979 0 833 1 447237 genus 833 0 no rank 2626248 1 1 1795630 species 0 Frondihabitans sp. PAMC 28766 833 2 110932 genus 14 0 Leifsonia 1 1557 Leifsonia xyli 1543 0 species 1575 1 0 248 1 genus 1705353 Aurantimicrobium minutum 248 0 species 708131 1 2 genus 518733 0 3 Microterricola 1 925 412690 species 1 Microterricola viridarii 922 0 Microcella 1 511 0 1 genus 337004 2 0 510 Microcella alkaliphila 1 279828 species 79 0 4905 1 Promicromonosporaceae 8 85017 family genus 157920 3 1 1714 Cellulosimicrobium 0 27 0 Cellulosimicrobium cellulans 944 1 1710 species 1 no rank 2624466 0 743 743 Cellulosimicrobium sp. TH-20 0 species 1980001 1 Isoptericola 1 1750 0 38 genus 254250 3 1 139208 species 0 654 Isoptericola variabilis 372663 species 1 1058 Isoptericola dokdonensis 0 1362 0 186188 genus 1 186189 species 1 1362 Xylanimonas cellulosilytica 0 85022 family 3 Jonesiaceae 329 1 15 0 0 3 Jonesia 1 314 2 genus 43673 species 43674 1 Jonesia denitrificans 311 0 family 1268 39 1 48310 Micrococcaceae 0 1388 genus 1645 2 1 257 Renibacterium 0 1 1 species 1646 0 256 Renibacterium salmoninarum genus 1868332 2 1 4248 Neomicrococcus 0 11 4237 Neomicrococcus aestuarii 0 556325 species 1 2078575 genus 1 393 0 0 Arthrobacter sp. IHBB 11108 393 1 species 1618207 0 12 16704 1 Rothia 3 genus 32207 43675 species 1 14606 Rothia mucilaginosa 0 2047 species 1 Rothia dentocariosa 2086 0 Sinomonas 1 1022 0 3 genus 596707 2 Sinomonas atrocyanea 1019 0 37927 species 1 Kocuria 2912 1 55 0 57493 genus 4 1 species 446860 0 968 Kocuria flava 71999 species 1 Kocuria palustris 699 0 1 species 72000 0 Kocuria rhizophila 1190 1 3030 Pseudarthrobacter 25 0 1742993 genus 4 1 species 85085 0 Pseudarthrobacter chlorophenolicus 1216 Pseudarthrobacter phenanthrenivorans 877 0 361575 species 1 912 Pseudarthrobacter sulfonivorans 0 species 121292 1 1269 genus 2 Micrococcus 1 1360 14 0 1 1270 species 0 1346 Micrococcus luteus 4 0 Glutamicibacter 1237 1 2 1742989 genus 1233 Glutamicibacter arilaitensis 0 species 256701 1 Arthrobacter 14859 1 334 0 1663 genus 15 656366 species 1 Arthrobacter alpinus 1428 0 1 species 37928 0 Arthrobacter crystallopoietes 1305 11792 0 235627 no rank 12 0 Arthrobacter sp. ATCC 21022 683 1 species 1771959 1 species 2079227 0 870 Arthrobacter sp. PGP41 species 1652545 1 Arthrobacter sp. YC-RL1 1363 0 1690248 species 1 Arthrobacter sp. LS16 1440 0 species 1494608 1 937 Arthrobacter sp. PAMC 25486 0 Arthrobacter sp. Rue61a 680 0 1118963 species 1 Arthrobacter sp. ERGS1:01 985 0 1704044 species 1 1 1357915 species 0 972 Arthrobacter sp. QXT-31 0 1133 Arthrobacter sp. FB24 1 species 290399 0 Arthrobacter sp. ZXY-2 682 1 1806905 species 0 813 Arthrobacter sp. YN 1 2020486 species 1234 Arthrobacter sp. U41 0 1849032 species 1 1 1742992 genus 0 900 1 species 43663 0 900 Paenarthrobacter aurescens 0 72 1 2287 Dermacoccaceae 7 family 145357 2 745364 genus 7 0 Luteipulveratus 1 788 1 species 571913 0 Luteipulveratus mongoliensis 781 57499 genus 2 Kytococcus 763 1 23 0 740 Kytococcus sedentarius 0 species 1276 1 2 57495 genus 6 0 664 1 Dermacoccus 1 species 1274 0 Dermacoccus nishinomiyaensis 658 78 0 6534 1 Dermabacteraceae 11 85020 family 43668 genus 6 Brachybacterium 5588 1 117 0 988 Brachybacterium sp. VR2415 0 2017485 species 1 0 1141 1 2623841 no rank 1903186 species 1 1141 Brachybacterium sp. P6-10-X1 0 1 species 2017484 0 1019 Brachybacterium sp. VM2412 1 43669 species 0 Brachybacterium faecium 1352 971 Brachybacterium ginsengisoli 0 1331682 species 1 2 genus 36739 0 1 403 1 Dermabacter species 1630135 1 Dermabacter vaginalis 402 0 472568 genus 2 465 1 Devriesea 3 0 1 species 472569 0 Devriesea agamarum 462 33 0 3137 1 Cellulomonadaceae 6 85016 family 55 0 1 3104 Cellulomonas 5 1707 genus Cellulomonas flavigena 870 0 1711 species 1 0 711 1 2620175 no rank 0 Cellulomonas sp. PSBB021 711 1 2003551 species Cellulomonas fimi 734 0 species 1708 1 0 Cellulomonas gilvus 734 1 11 species 1 0 Actinopolysporales 868 1 4 622450 order 0 1 Actinopolysporaceae 867 1 3 family 622451 2 1849 genus 2 0 866 1 Actinopolyspora 414996 species 1 864 Actinopolyspora erythraea 0 14 0 1 2201 Candidatus Nanopelagicales 12 2039638 order 2162846 family 11 2187 0 4 2039639 genus 4 0 1 420 Candidatus Nanopelagicus 0 84 Candidatus Nanopelagicus hibericus 1 species 1884915 1 1884634 species 0 Candidatus Nanopelagicus limnes 152 Candidatus Nanopelagicus abundans 180 0 species 1884916 1 1767 1 Candidatus Planktophila 0 24 genus 622681 7 species 1884913 1 Candidatus Planktophila lacus 336 0 0 472 Candidatus Planktophila versatilis 1 1884905 species 0 Candidatus Planktophila sulfonica 254 1 1884904 species species 1884914 1 286 Candidatus Planktophila dulcis 0 573600 species 1 122 Candidatus Planktophila limnetica 0 1 1884907 species 0 Candidatus Planktophila vernalis 273 32 84998 class 523 0 Coriobacteriia 121473 1 14 84999 order 207 0 Coriobacteriales 1 32837 7 family 1643824 0 348 Atopobiaceae 1 17727 1 genus 2767353 0 2452 2452 Atopobium parvulum 0 1382 species 1 1380 genus 1 2 Atopobium 0 133925 genus 4 14925 1 Olsenella 204 0 4558 Olsenella uli 0 species 133926 1 0 3483 1 no rank 2638792 712411 species 1 Olsenella sp. oral taxon 807 3483 0 1 1805478 species 0 6680 Olsenella sp. Marseille-P2300 6 family 84107 0 1007 1 14903 Coriobacteriaceae 1 no rank 84113 0 3131 0 3131 Coriobacteriaceae bacterium 68-1-3 1 species 1531429 0 82 Collinsella 1 9147 2 genus 102106 74426 species 1 9065 Collinsella aerofaciens 0 0 5 1 1618 Coriobacterium 2 genus 33870 1 33871 species 0 Coriobacterium glomerans 1613 560 0 Eggerthellales 88113 1 17 1643822 order 14509 0 Eggerthellaceae 87553 1 16 1643826 family genus 1981050 2 Phoenicibacter 1 5005 0 1 0 Phoenicibacter massiliensis 5004 1 species 1944646 644652 genus 3 Gordonibacter 1 13951 108 0 0 Gordonibacter massiliensis 6102 1 species 1841863 0 7741 Gordonibacter urolithinfaciens 1 species 1335613 1 genus 84162 0 427 species 84163 1 427 Cryptobacterium curtum 0 genus 447020 2 1 6222 Adlercreutzia 0 3 Adlercreutzia equolifaciens 6219 0 species 446660 1 3 84111 genus 147 0 Eggerthella 1 40468 0 4716 1 no rank 2648737 0 Eggerthella sp. YY7918 4716 1 502558 species 0 35605 Eggerthella lenta 1 84112 species 1 4575 Slackia 15 0 84108 genus 2 Slackia heliotrinireducens 4560 0 84110 species 1 1 0 2396 1 Denitrobacterium 2 79603 genus 0 2395 Denitrobacterium detoxificans 1 species 79604 Thermoleophilia 1 1532 9 0 1497346 class 5 4 order 588673 0 58 Solirubrobacterales 1523 1 3 320583 family 11 0 Conexibacteraceae 1465 1 Conexibacter 1 1454 28 0 191494 genus 2 1 species 191495 0 Conexibacter woesei 1426 no rank 1752188 4 643 0 1 1848754 species 0 Actinobacteria bacterium IMCC19121 212 1 species 1848755 0 151 Actinobacteria bacterium IMCC26077 species 1848255 1 Actinobacteria bacterium IMCC25003 166 0 1 species 1848756 0 114 Actinobacteria bacterium IMCC26103 1175 1 Acidimicrobiia 2 0 84992 class 5 84993 order 4 Acidimicrobiales 1173 1 52 0 929 0 2448023 family 2 682522 genus 2 Ilumatobacter 1 929 5 0 924 Ilumatobacter coccineus 0 467094 species 1 1 family 84994 0 192 53634 genus 1 192 0 0 192 Acidimicrobium ferrooxidans 1 species 53635 Rubrobacteria 2113 1 0 21 class 84995 6 2092 1 Rubrobacterales 27 0 84996 order 5 84997 family 4 1 2065 Rubrobacteraceae 17 0 42255 genus 3 Rubrobacter 2048 1 63 0 572 Rubrobacter radiotolerans 0 species 42256 1 1 49319 species 0 Rubrobacter xylanophilus 1413 phylum 67819 3 664 0 5 0 Fimbriimonadia 664 1 3 1663419 class 0 659 2 order 1663425 Fimbriimonadaceae 1 659 3 0 1663426 family 2 0 656 1 genus 1005038 1 1005039 species 0 Fimbriimonas ginsengisoli 656 42 phylum 200795 0 3 1 15007 Chloroflexi Caldilineae 1135 1 0 8 class 475962 4 13 0 1127 1 Caldilineales 3 475963 order 1114 0 family 475964 2 2 233191 genus 4 0 Caldilinea 1114 1 1110 Caldilinea aerophila 0 species 133453 1 5 1382928 class 75 0 1 2549 Ardenticatenia 17 0 Ardenticatenales 1 2474 4 1382929 order Ardenticatenaceae 2457 1 32 0 1382930 family 3 1988031 genus 2 Candidatus Promineofilum 1 2425 2 0 Candidatus Promineofilum breve 2423 0 1806508 species 1 0 5 Dehalococcoidia 2970 1 6 class 301297 3 genus 670486 0 4 1 1208 Dehalogenimonas 1 552810 species 0 622 Dehalogenimonas lykanthroporepellens Dehalogenimonas formicexedens 582 0 species 1839801 1 0 1757 2 order 1202465 0 1757 2 1202464 family 2 genus 61434 0 1757 0 230 1 237581 no rank 0 Dehalococcoides sp. UCH007 230 1 species 1522671 Dehalococcoides mccartyi 1527 0 species 61435 1 3630 1 Chloroflexia 9 0 32061 class 10 1 3621 Chloroflexales 12 0 32064 order 9 4 suborder 1508594 0 1578 0 1578 4 1106 family 4 genus 1107 0 48 1 1578 Chloroflexus Chloroflexus aggregans 516 0 species 152260 1 1014 1 Chloroflexus aurantiacus 0 507 species 1108 2 1 strain 480224 0 Chloroflexus sp. Y-400-fl 507 0 2031 4 1508595 suborder 0 13 2031 1 Roseiflexaceae 4 family 1508635 1 2018 Roseiflexus 1 0 120961 genus 3 Roseiflexus castenholzii 1075 0 species 120962 1 1 no rank 2609473 0 942 0 942 Roseiflexus sp. RS-1 1 species 357808 189775 class 9 1 1110 Thermomicrobia 12 0 7 0 Thermomicrobiales 327 1 4 189776 order 3 189777 family 4 0 1 320 Thermomicrobiaceae genus 499 2 Thermomicrobium 1 316 0 1 0 Thermomicrobium roseum 315 1 500 species 0 771 4 85000 subclass 23 0 1 771 Sphaerobacterales 4 85001 order 0 748 3 suborder 255728 9 0 Sphaerobacteraceae 1 748 3 85002 family 2 2056 genus 12 0 1 739 Sphaerobacter Sphaerobacter thermophilus 727 0 2057 species 1 3610 0 292625 class 7 7 order 292629 0 3 3610 1 Anaerolineales 6 292628 family 3 0 3607 1 Anaerolineaceae no rank 1324991 1 2247 0 species 1889813 1 2247 Anaerolineaceae bacterium oral taxon 439 0 1 0 894 1 Anaerolinea 2 233189 genus 893 Anaerolinea thermophila 0 167964 species 1 0 4 Brevefilum 1 463 2 genus 2019482 species 1986204 1 Brevefilum fermentans 459 0 1798711 clade 147 54587 0 54587 1 Cyanobacteria 0 14 phylum 1117 147 34 1161 order 27 0 Nostocales 1 13409 3838 0 2661849 family 8 Calothrix 3838 1 14 0 1186 genus 8 no rank 2619626 6 3328 0 0 Calothrix sp. NIES-2098 522 1 1954171 species Calothrix sp. NIES-4101 596 0 2005461 species 1 Calothrix sp. NIES-4071 899 0 2005469 species 1 1 species 1337936 0 Calothrix sp. 336/3 462 2005462 species 1 Calothrix sp. NIES-3974 437 0 412 Calothrix sp. PCC 7507 0 99598 species 1 496 Calothrix parietina 0 32054 species 1 7545 1 Nostocaceae 23 0 1162 family 18 3 264688 genus 1 0 1 769 Trichormus species 1164 1 347 Trichormus azollae 0 264691 species 1 Trichormus variabilis 421 0 1163 genus 4 1 1970 Anabaena 3 0 0 1397 2 2619674 no rank 768 Anabaena sp. 90 0 46234 species 1 0 629 Anabaena sp. WA102 1 1647413 species 1165 species 1 Anabaena cylindrica 570 0 0 26 1 4783 Nostoc 10 genus 1177 1 272131 species 0 499 Nostoc punctiforme 0 3532 7 2593658 no rank 317936 species 1 491 Nostoc sp. PCC 7107 0 species 28072 1 670 Nostoc sp. PCC 7524 0 0 Nostoc sp. CENA543 452 1 species 1869241 species 1261031 1 580 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 0 Nostoc sp. PCC 7120 528 1 103690 species 1 1751286 species 0 372 Nostoc sp. NIES-3756 species 1618022 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 439 0 species 1306274 1 726 Nostoc flagelliforme 0 0 491 1 no rank 1219117 species 1940762 1 491 Nostocales cyanobacterium HT-58-2 0 5 0 535 1 Hapalosiphonaceae 3 1892263 family genus 1190 2 Fischerella 530 1 0 2 no rank 494603 1 528 0 1 species 1752063 0 Fischerella sp. NIES-3754 528 3 family 1185 0 7 Rivulariaceae 1 973 Rivularia 1 966 0 15 genus 373984 2 951 0 2676603 no rank 1 0 Rivularia sp. PCC 7116 951 1 373994 species 0 13081 40 1301283 subclass 18 order 1150 0 32 4664 1 Oscillatoriales 0 3 Oscillatoriaceae 1 1630 6 family 1892254 Oscillatoria 1 1152 0 12 genus 1158 3 Oscillatoria acuminata 545 0 species 118323 1 1 species 482564 0 Oscillatoria nigro-viridis 595 2 1155738 genus 4 0 Moorea 1 475 471 Moorea producens 0 1155739 species 1 family 1892252 3 1 1153 Microcoleaceae 0 1 1 genus 44471 0 454 454 0 2642155 no rank 1 0 Microcoleus sp. PCC 7113 454 1 1173027 species 1205 genus 1 698 0 Trichodesmium erythraeum 698 0 species 1206 1 2 family 1892255 0 5 Gomontiellaceae 1 495 241421 genus 1 490 0 0 Crinalium epipsammum 490 1 241425 species Coleofasciculaceae 1 901 0 5 family 1892251 3 0 6 1 896 Geitlerinema 2 genus 63132 890 0 2648775 no rank 1 1 1173025 species 0 Geitlerinema sp. PCC 7407 890 Cyanothecaceae 453 1 8 0 1892249 family 3 Cyanothece 445 1 0 68 genus 43988 2 1 2649277 no rank 0 377 1 species 395961 0 377 Cyanothece sp. PCC 7425 order 1118 22 1 8417 Chroococcales 0 12 family 1890452 1 956 0 0 956 1 102234 genus 0 Cyanobacterium aponinum 956 1 379064 species 2 0 3372 1 Aphanothecaceae 9 1890450 family 0 311 2 92682 no rank 2 76023 genus 4 0 311 1 Halothece 0 307 1 no rank 2632878 1 species 65093 0 Halothece sp. PCC 7418 307 0 1195 2 2546365 genus 2546366 species 2 1195 0 551 Cyanothece sp. PCC 8802 0 strain 395962 1 644 Cyanothece sp. PCC 8801 0 strain 41431 1 1 263510 genus 0 403 species 2546360 1 403 0 0 403 Cyanothece sp. ATCC 51142 1 strain 43989 0 304 1 1453359 genus 0 Candidatus Atelocyanobacterium thalassa 304 1 species 713887 28070 genus 2 1157 0 641 0 2546356 species 1 641 Cyanothece sp. PCC 7424 0 strain 65393 1 1 2546359 species 0 516 1 497965 strain 0 Cyanothece sp. PCC 7822 516 7 family 1890464 0 4 Chroococcaceae 2504 1 1 654 Gloeocapsa 0 1 genus 102231 2 0 653 1 no rank 2623012 653 Gloeocapsa sp. PCC 7428 0 1173026 species 1 0 425 1 268175 genus no rank 2648896 1 425 0 Chondrocystis sp. NIES-4102 425 0 2005460 species 1 0 13 1421 1 Geminocystis 3 genus 669357 no rank 2625037 2 1408 0 species 1617448 1 643 Geminocystis sp. NIES-3709 0 Geminocystis sp. NIES-3708 765 0 species 1615909 1 Microcystaceae 1573 1 5 0 1890449 family 4 1568 1 Microcystis 9 0 1125 genus 3 1 1126 species 0 Microcystis aeruginosa 1080 no rank 2643300 1 479 0 1 species 1967666 0 479 Microcystis sp. MC19 521 0 1890505 order 2 family 1890528 2 521 0 521 1 Chroococcidiopsis 0 1 genus 54298 2 Chroococcidiopsis thermalis 520 0 species 54299 1 57 1890424 order 238 0 Synechococcales 1 23677 0 4 Prochloraceae 1 2966 5 family 1213 1218 genus 4 Prochlorococcus 1 2962 5 0 644 0 no rank 2627481 2 1 1501269 species 0 Prochlorococcus sp. MIT 0801 323 1 1501268 species 0 Prochlorococcus sp. MIT 0604 321 2313 Prochlorococcus marinus 0 1219 species 1 family 1890438 6 Leptolyngbyaceae 1 2819 0 40 4 0 1 2779 Leptolyngbya 5 47251 genus 988 Leptolyngbya boryana 0 1184 species 1 3 2650499 no rank 0 1787 1 1080068 species 0 Leptolyngbya sp. O-77 852 Leptolyngbya sp. PCC 7376 452 0 111781 species 1 Leptolyngbya sp. NIES-3755 483 0 1752064 species 1 3 1890429 family 1 0 435 1 Acaryochloridaceae 2 155977 genus 4 0 Acaryochloris 1 434 155978 species 1 430 Acaryochloris marina 0 0 507 2 2303730 family 6 0 507 1 Halomicronema 2 170610 genus 1209493 species 1 Halomicronema hongdechloris 501 0 1890428 family 5 968 1 Merismopediaceae 1 0 4 1142 genus 45 0 Synechocystis 1 967 3 2640012 no rank 0 922 Synechocystis sp. PCC 6803 256 0 species 1148 1 1 2116702 species 0 255 Synechocystis sp. IPPAS B-1465 1147 species 1 411 Synechocystis sp. PCC 6714 0 1890436 family 2 315 0 13 0 Pseudanabaena 1 315 2 1152 genus 302 0 no rank 2593292 1 1 species 82654 0 302 Pseudanabaena sp. PCC 7367 33 1890426 family 73 0 15429 1 Synechococcaceae 0 55 3820 1 Cyanobium 3 genus 167375 59930 species 1 Cyanobium gracile 1986 0 0 1779 1 2627006 no rank 0 1779 Cyanobium sp. NIES-981 1 1851505 species 1 genus 146785 0 200 146786 species 1 200 Thermosynechococcus elongatus 0 26 1129 genus 215 0 Synechococcus 10943 1 Synechococcus lividus 239 0 species 33070 1 0 10024 23 no rank 2626047 species 321327 1 Synechococcus sp. JA-3-3Ab 1259 0 0 520 Synechococcus sp. CC9605 1 110662 species 166314 species 1 518 Synechococcus sp. WH 8109 0 Synechococcus sp. WH 8103 453 0 species 29410 1 0 190 Synechococcus sp. CC9902 1 316279 species Synechococcus sp. PCC 7502 269 0 1173263 species 1 Synechococcus sp. WH 7803 380 0 species 32051 1 1 321332 species 0 Synechococcus sp. JA-2-3B'a(2-13) 650 0 Synechococcus sp. UTEX 2973 465 1 species 1350461 585423 species 1 638 Synechococcus sp. KORDI-49 0 species 316278 1 585 Synechococcus sp. RCC307 0 1 195253 species 0 256 Synechococcus sp. PCC 6312 0 Synechococcus sp. WH 8102 470 1 84588 species 0 Synechococcus sp. PCC 7117 195 1 species 195498 0 486 Synechococcus sp. KORDI-52 1 species 585425 0 Synechococcus sp. SynAce01 551 1 1916956 species species 64471 1 192 Synechococcus sp. CC9311 0 0 Synechococcus sp. PCC 73109 235 1 374982 species 310 Synechococcus sp. PCC 7002 0 species 32049 1 1 species 374981 0 Synechococcus sp. PCC 7003 305 1 species 1827144 0 Synechococcus sp. NIES-970 303 1280380 species 1 473 Synechococcus sp. KORDI-100 0 1 species 195248 0 321 Synechococcus sp. PCC 8807 1 32046 species 0 465 Synechococcus elongatus Dactylococcopsis 393 1 4 0 13034 genus 2 1 292566 species 0 Dactylococcopsis salina 389 1 1983111 no rank 0 303 0 cyanobacterium endosymbiont of Epithemia turgida 303 1 species 718217 Gloeobacteria 1 2139 32 0 307596 class 6 0 39 Gloeobacterales 2107 1 5 order 307595 0 25 Gloeobacteraceae 2068 1 4 family 1890422 0 10 Gloeobacter 1 2043 3 genus 33071 1211 Gloeobacter violaceus 0 33072 species 1 1416614 species 1 Gloeobacter kilaueensis 822 0 0 15 Pleurocapsales 1 1443 6 order 52604 family 1890498 3 1 988 Dermocarpellaceae 0 2 genus 102115 2 986 0 species 102116 1 Stanieria cyanosphaera 566 0 1 2642663 no rank 0 420 Stanieria sp. NIES-3757 420 0 1807358 species 1 0 440 2 1890500 family 2 genus 44474 0 1 440 1 Pleurocapsa 0 439 Pleurocapsa minor 1 54308 species 36 phylum 1297 0 28372 class 188787 36 Deinococci 1 28372 0 139 2762275 order 3 668 0 332247 family 3 Trueperaceae 668 1 12 0 11 0 1 656 Truepera 2 332248 genus 0 Truepera radiovictrix 645 1 332249 species 118964 order 15 18670 1 Deinococcales 188 0 95 0 18482 1 Deinococcaceae 14 183710 family 18387 1 Deinococcus 0 192 genus 1298 13 2623546 no rank 1 1219 0 1219 Deinococcus sp. NW-56 0 species 2080419 1 0 1158 Deinococcus maricopensis 1 309887 species 1 species 1299 0 Deinococcus radiodurans 1473 1309411 species 1 Deinococcus soli Cha et al. 2016 1933 0 species 55148 1 Deinococcus proteolyticus 2243 0 2263 Deinococcus swuensis 0 species 1182571 1 982 Deinococcus peraridilitoris 0 species 432329 1 Deinococcus deserti 972 0 310783 species 1 1 species 1768108 0 Deinococcus actinosclerus 1812 0 990 Deinococcus puniceus 1 1182568 species 0 1897 Deinococcus gobiensis 1 species 502394 0 1253 Deinococcus geothermalis 1 species 68909 17 68933 order 96 0 Thermales 8895 1 family 188786 16 8799 1 Thermaceae 0 72 2 genus 186191 0 6 574 1 Marinithermus 1 186192 species 0 Marinithermus hydrothermalis 568 genus 270 8 Thermus 1 4599 0 192 1 species 56957 0 Thermus oshimai 625 0 394 Thermus parvatiensis 1 456163 species species 37636 1 467 Thermus scotoductus 0 0 670 1 no rank 2619321 species 1111069 1 Thermus sp. CCB_US3_UF1 670 0 0 Thermus thermophilus 1269 1 species 274 1 species 271 0 758 Thermus aquaticus 1 species 56956 0 Thermus brockianus 224 1 1696 Oceanithermus 5 0 208447 genus 2 1691 Oceanithermus profundus 0 187137 species 1 1 1858 Meiothermus 13 0 65551 genus 3 0 Meiothermus ruber 1014 1 277 species 1 52022 species 0 Meiothermus silvanus 831 722 phylum 1239 0 392 11107082 1 Firmicutes 1676648 class 5 1665 1 Limnochordia 13 0 Limnochordales 1 1652 31 0 1676649 order 4 family 1676650 3 Limnochordaceae 1 1621 0 16 1676651 genus 2 1605 1 Limnochorda 42 0 1563 Limnochorda pilosa 0 1555112 species 1 235 0 1192985 1 Bacilli 431 91061 class Bacillales 335332 1 0 760 order 1385 265 Alicyclobacillaceae 6726 1 35 0 186823 family 9 2 genus 29330 0 63 Alicyclobacillus 1 1969 species 405212 1 1906 Alicyclobacillus acidocaldarius 0 3 432330 genus 21 0 Tumebacillus 1 3192 Tumebacillus avium 1774 0 species 1903704 1 1397 Tumebacillus algifaecis 0 species 1214604 1 1129704 genus 3 1 1530 Kyrpidia 23 0 1 33943 species 0 Kyrpidia tusciae 875 Kyrpidia sp. EA-1 632 0 2055160 species 1 2 186821 family 2 0 Sporolactobacillaceae 1 1347 no rank 663587 1 1345 0 1 species 85683 0 1345 [Bacillus] selenitireducens Bacillaceae 1 149808 645 0 186817 family 116 2 182709 genus 2 0 2087 1 Oceanobacillus 182710 species 1 2085 Oceanobacillus iheyensis 0 175304 genus 2 Lentibacillus 901 1 12 0 0 889 Lentibacillus amyloliquefaciens 1 1472767 species 351195 genus 1 868 0 1 species 1230341 0 Salimicrobium jeotgali 868 557 0 9808 1 Geobacillus 15 129337 genus 129338 species 1 Geobacillus subterraneus 669 0 Geobacillus genomosp. 3 669 0 species 1921421 1 1505648 species group 4 2917 0 0 Geobacillus lituanicus 754 1 species 169283 1 species 33938 0 Geobacillus thermocatenulatus 580 0 Geobacillus kaustophilus 366 1 1462 species 1 species 33941 0 1217 Geobacillus thermoleovorans 33940 species 1 Geobacillus thermodenitrificans 983 0 Geobacillus stearothermophilus 951 0 1422 species 1 6 2642459 no rank 0 3062 Geobacillus sp. Y412MC52 276 0 550542 species 1 1007 Geobacillus sp. Y4.1MC1 0 species 581103 1 471223 species 1 Geobacillus sp. WCH70 730 0 1 species 691437 0 Geobacillus sp. C56-T3 459 0 338 Geobacillus sp. GHH01 1 species 1233873 544556 species 1 252 Geobacillus sp. Y412MC61 0 1070 0 genus 459532 1 Terribacillus aidingensis 1070 0 species 586416 1 genus 1329200 3 2352 1 Fictibacillus 0 7 0 1314 Fictibacillus arsenicus 1 species 255247 species 1221500 1 1031 Fictibacillus phosphorivorans 0 genus 45667 2 2121 0 1 1570 species 0 Halobacillus halophilus 974 402384 species 1 Halobacillus mangrovi 1147 0 1055323 genus 1 1106 0 1106 Aeribacillus pallidus 0 species 33936 1 1386 genus 58 Bacillus 1 97605 6911 0 species 86664 1 1025 Bacillus flexus 0 883 Bacillus smithii 0 1479 species 1 species group 86661 10 31609 0 species 155322 1 1061 Bacillus toyonensis 0 0 4160 3 no rank 2750818 1 2053832 species 0 Bacillus sp. HBCD-sjtu 1760 1839798 species 1 Bacillus sp. FDAARGOS_235 1528 0 Bacillus sp. ABP14 872 0 1892404 species 1 1 species 1405 0 Bacillus mycoides 3971 species 580165 1 1310 Bacillus cytotoxicus 0 0 Bacillus thuringiensis 9249 1 1428 species 0 Bacillus bombysepticus 1174 1 species 658666 0 9828 Bacillus cereus 1 species 1396 1 species 1392 0 Bacillus anthracis 856 1 species 1398 0 2620 Bacillus coagulans Bacillus horikoshii 1114 0 species 79883 1 33932 species 1 1259 Bacillus cohnii 0 1 species 1547283 0 1183 Bacillus weihaiensis 1 1178537 species 0 Bacillus xiamenensis 822 Bacillus pumilus 4482 0 species 1408 1 1201 0 1792192 species group 1 293387 species 1 Bacillus altitudinis 1201 0 species 1413 1 1181 Bacillus cellulosilyticus 0 1 412384 species 0 Bacillus aryabhattai 1142 1 1471 species 0 Bacillus methanolicus 1087 324767 species 1 1586 Bacillus infantis 0 0 1557 Bacillus endophyticus 1 species 135735 12486 0 no rank 185979 19 1 1856406 species 0 Bacillus sp. H15-1 1017 1565991 species 1 Bacillus sp. X1(2014) 1266 0 0 452 Bacillus sp. MD-5 1 species 2009331 1229 Bacillus sp. 1NLA3E 0 666686 species 1 1 species 2026248 0 1017 Bacillus sp. 1s-1 species 1827146 1 Bacillus sp. IHB B 7164 1050 0 756828 species 1 Bacillus sp. WP8 954 0 species 1409 1 396 Bacillus sp. (in: Bacteria) 0 0 Bacillus sp. SDLI1 661 1 species 1774743 397 Bacillus sp. SJ-10 0 563169 species 1 0 Bacillus sp. BH072 154 1 species 1570330 0 463 Bacillus sp. JS 1 1127744 species 760 Bacillus sp. FJAT-14266 0 species 1837130 1 1 species 2049935 0 Bacillus sp. Lzh-5 144 species 98228 1 949 Bacillus sp. OxB-1 0 0 454 Bacillus sp. 275 1 species 1941347 1574141 species 1 434 Bacillus sp. YP1 0 species 1628753 1 260 Bacillus sp. LM 4-2 0 429 Bacillus sp. Pc3 0 species 1446792 1 1664069 species 1 1527 Bacillus glycinifermentans 0 632773 species 1 Bacillus beveridgei 967 0 0 1962 Bacillus safensis 1 species 561879 species group 653685 9 17885 0 1 1423 species 0 Bacillus subtilis 7145 0 221 Bacillus vallismortis 1 species 72361 1 119858 species 0 Bacillus sonorensis 1447 1452 Bacillus atrophaeus 0 1452 species 1 0 4825 3 1938374 species subgroup species 1390 1 2191 Bacillus amyloliquefaciens 0 Bacillus siamensis 656 0 659243 species 1 1 species 492670 0 Bacillus velezensis 1978 0 Bacillus paralicheniformis 1332 1 species 1648923 1402 species 1 1463 Bacillus licheniformis 0 1 species 79881 0 198 Bacillus gibsonii Bacillus megaterium 2918 0 species 1404 1 genus 150247 6 4681 1 Anoxybacillus 0 18 species 198467 1 755 Anoxybacillus gonensis 0 0 1736 2 no rank 2639704 1 species 1490052 0 Anoxybacillus sp. B2M1 914 species 1490057 1 822 Anoxybacillus sp. B7M1 0 1 294699 species 0 722 Anoxybacillus amylolyticus 0 1450 Anoxybacillus flavithermus 1 33934 species genus 2675234 5 5772 0 0 Bacillus halodurans 640 1 86665 species 0 1091 Bacillus krulwichiae 1 species 199441 0 866 Bacillus pseudofirmus 1 79885 species 300825 species 1 1380 Bacillus lehensis 0 Bacillus clausii 1795 0 species 79880 1 29331 genus 2 Amphibacillus 1806 1 1 0 species 1449 1 Amphibacillus xylanus 1805 0 55 0 Lysinibacillus 6717 1 5 400634 genus 3160 Lysinibacillus sphaericus 0 species 1421 1 1 species 28031 0 1080 Lysinibacillus fusiformis no rank 2636778 1 1078 0 0 1078 Lysinibacillus sp. YS11 1 species 2072025 Lysinibacillus varians 1344 0 species 1145276 1 2409 0 2675230 genus 2 0 Bacillus oceanisediminis 1423 1 species 665099 859143 species 1 986 Bacillus kochii 0 genus 84406 7 Virgibacillus 1 5841 0 61 0 832 Virgibacillus pantothenticus 1 1473 species species 1482 1 872 Virgibacillus halodenitrificans 0 1990 0 no rank 2620237 2 1143 Virgibacillus sp. 6R 0 1911587 species 1 Virgibacillus sp. SK37 847 0 species 403957 1 0 1084 Virgibacillus necropolis 1 species 163877 0 Virgibacillus phasianinus 1002 1 2017483 species 2979 0 genus 2675229 2 1 1478 species 0 Bacillus simplex 2000 979 Bacillus muralis 0 264697 species 1 1906945 genus 1 1040 0 0 Parageobacillus thermoglucosidasius 1040 1 1426 species 0 5 3030 1 Thermoactinomycetaceae 4 family 186824 0 Laceyella 15 1 292635 genus 2 genus 1677050 0 82 1 3010 Novibacillus 1471761 species 1 Novibacillus thermophilus 2928 0 50956 1 Staphylococcaceae 0 5319 family 90964 42 genus 2005363 2 Auricoccucs 1 729 0 4 1849491 species 1 725 Auricoccus indicus 0 genus 45669 2 1 1266 Salinicoccus 0 5 0 1261 Salinicoccus halodurans 1 species 407035 69965 genus 4 4267 1 Macrococcus 15 0 1 2619255 no rank 0 1005 1898474 species 1 1005 Macrococcus sp. IME1552 0 1855823 species 1 Macrococcus canis 1012 0 1 69966 species 0 Macrococcus caseolyticus 2235 33 genus 1279 0 1755 Staphylococcus 39375 1 Staphylococcus epidermidis 1759 0 1282 species 1 0 Staphylococcus haemolyticus 1041 1 1283 species Staphylococcus cohnii 902 0 species 29382 1 1 1292 species 0 Staphylococcus warneri 940 1 species 985762 0 Staphylococcus agnetis 789 species 1288 1 Staphylococcus xylosus 1534 0 0 Staphylococcus sciuri 1335 1 species 1296 species 29384 1 Staphylococcus kloosii 930 0 1 308354 species 0 1151 Staphylococcus simiae 1 29385 species 0 886 Staphylococcus saprophyticus 0 Staphylococcus hominis 993 1 1290 species 1 species 1280 0 5243 Staphylococcus aureus 246432 species 1 1030 Staphylococcus equorum 0 214473 species 1 948 Staphylococcus nepalensis 0 0 Staphylococcus piscifermentans 827 1 70258 species 824 0 no rank 91994 1 species 1715860 1 824 Staphylococcus sp. AntiMn-1 0 1 61015 species 0 Staphylococcus succinus 1071 0 Staphylococcus hyicus 855 1 1284 species 0 Staphylococcus felis 880 1 46127 species 1 species 1286 0 1065 Staphylococcus simulans 1795 Staphylococcus pseudintermedius 0 species 283734 1 0 Staphylococcus stepanovicii 989 1 species 643214 0 654 Staphylococcus pettenkoferi 1 species 170573 0 Staphylococcus lutrae 697 1 species 155085 0 Staphylococcus schleiferi 839 1 1295 species 2029 Staphylococcus pasteuri 0 45972 species 1 Staphylococcus capitis 1028 0 species 29388 1 0 1124 Staphylococcus argenteus 1 species 985002 1294 species 1 667 Staphylococcus muscae 0 0 1051 Staphylococcus lugdunensis 1 species 28035 1 70255 species 0 935 Staphylococcus condimenti 1281 species 1 Staphylococcus carnosus 809 0 0 103 1 9560 Listeriaceae 9 family 186820 2 2755 genus 4 0 978 1 Brochothrix 2756 species 1 Brochothrix thermosphacta 974 0 1637 genus 6 1 8479 Listeria 84 0 1056 Listeria seeligeri 0 species 1640 1 1639 species 1 3470 Listeria monocytogenes 0 1 1643 species 0 1148 Listeria welshimeri 0 Listeria innocua 1010 1 species 1642 0 Listeria ivanovii 1711 1 1638 species 6428 0 539002 no rank 9 0 4191 7 no rank 539742 Exiguobacterium 1 4191 126 0 33986 genus 7 710 Exiguobacterium sibiricum 0 species 332410 1 no rank 2644629 4 2723 0 0 699 Exiguobacterium sp. ZWU0009 1 species 1224749 0 813 Exiguobacterium sp. AT1b 1 species 360911 0 Exiguobacterium sp. U13-1 716 1 1849031 species 0 495 Exiguobacterium sp. MH3 1 1399115 species 0 Exiguobacterium antarcticum 632 1 species 132920 no rank 539738 2 2237 0 1378 genus 2 1 2237 Gemella 1 0 2236 0 2624949 no rank 1 Gemella sp. oral taxon 928 2236 0 species 1785995 1 27 186818 family 41 0 1 21372 Planococcaceae 648800 genus 3 Solibacillus 1 2748 13 0 1 76853 species 0 1572 Solibacillus silvestris 2637870 no rank 1 1163 0 0 1163 Solibacillus sp. R5-41 1 species 2048654 Kurthia 1 1804 4 0 1649 genus 2 1 no rank 2644826 0 1800 1 1750719 species 0 Kurthia sp. 11kri321 1800 genus 1569 5 Sporosarcina 1 5285 0 28 0 1943 2 no rank 2647733 932 Sporosarcina sp. P37 0 species 1930546 1 Sporosarcina sp. P33 1011 0 1930764 species 1 Sporosarcina ureae 2421 0 species 1571 1 0 Sporosarcina psychrophila 893 1 1476 species 1 9496 Planococcus 151 0 1372 genus 12 Planococcus maritimus 1633 0 192421 species 1 2662419 no rank 2 1615 0 648 Planococcus sp. PAMC 21323 0 1526927 species 1 species 2058136 1 967 Planococcus sp. MB-3u-03 0 636 Planococcus sp. L10.15 0 1302659 species 1 0 871 Planococcus rifietoensis 1 species 200991 0 636 Planococcus faecalis 1 1598147 species 0 790 Planococcus kocurii 1 1374 species Planococcus halocryophilus 695 0 species 1215089 1 0 711 Planococcus donghaensis 1 414778 species 161360 species 1 Planococcus antarcticus 1024 0 0 Planococcus plakortidis 734 1 species 1038856 Jeotgalibacillus 1 1189 0 2 genus 157226 2 1 1508404 species 0 Jeotgalibacillus malaysiensis 1187 0 2 Rummeliibacillus 809 1 2 genus 648802 807 Rummeliibacillus stabekisii 0 241244 species 1 0 180 Paenibacillaceae 1 85345 46 family 186822 no rank 85151 3 2364 0 3 55079 genus 9 0 1 2364 Aneurinibacillus 2642329 no rank 1 1064 0 1450761 species 1 Aneurinibacillus sp. XH2 1064 0 0 Aneurinibacillus soli 1291 1 species 1500254 0 26 Brevibacillus 1 4978 4 genus 55080 1393 species 1 1902 Brevibacillus brevis 0 species 1465 1 1982 Brevibacillus laterosporus 0 species 54913 1 Brevibacillus formosus 1068 0 genus 44249 36 1 75352 Paenibacillus 0 651 1406 species 1 4724 Paenibacillus polymyxa 0 1633 Paenibacillus beijingensis 0 species 1126833 1 1 species 1464 0 1344 Paenibacillus larvae 1870820 species 1 1978 Paenibacillus ihbetae 0 Paenibacillus naphthalenovorans 1596 0 species 162209 1 2147 Paenibacillus bovis 0 species 1616788 1 1 172713 species 0 Paenibacillus kribbensis 1468 Paenibacillus stellifer 2892 0 species 169760 1 2044880 species group 1 2449 0 0 2449 Paenibacillus riograndensis 1 483937 species 1012 Paenibacillus swuensis 0 1178515 species 1 61624 species 1 Paenibacillus mucilaginosus 3722 0 1 species 159743 0 Paenibacillus terrae 1691 185978 no rank 13 27134 0 species 1566358 1 Paenibacillus sp. IHBB 10380 965 0 0 1367 Paenibacillus sp. lzh-N1 1 2069255 species 1 species 1695218 0 1730 Paenibacillus sp. 32O-W 0 Paenibacillus sp. JDR-2 1912 1 324057 species species 1536769 1 3048 Paenibacillus sp. FSL P4-0081 0 1 1536774 species 0 2691 Paenibacillus sp. FSL H7-0357 species 1536775 1 1562 Paenibacillus sp. FSL H7-0737 0 1 1536772 species 0 2860 Paenibacillus sp. FSL R7-0273 1536770 species 1 1368 Paenibacillus sp. FSL R5-0345 0 1536773 species 1 3214 Paenibacillus sp. FSL R7-0331 0 481743 species 1 1981 Paenibacillus sp. Y412MC10 0 1 1870819 species 0 1580 Paenibacillus sp. BIHB4019 1536771 species 1 Paenibacillus sp. FSL R5-0912 2856 0 0 1192 Paenibacillus crassostreae 1 1763538 species 528191 species 1 Paenibacillus xylanexedens 1771 0 0 2885 Paenibacillus borealis 1 species 160799 1 species 189426 0 Paenibacillus odorifer 1699 0 2500 Paenibacillus graminis 1 189425 species 0 Paenibacillus sabinae 1670 1 species 365617 0 Paenibacillus yonginensis 2137 1 species 1462996 0 Paenibacillus donghaensis 2539 1 414771 species 0 Paenibacillus peoriae 1322 1 species 59893 species 44251 1 3196 Paenibacillus durus 0 0 8 Thermobacillus 2471 1 2 genus 76632 2463 Thermobacillus composti 0 species 377615 1 186826 order 165 857418 1 Lactobacillales 6962 0 family 33958 58 116539 1 Lactobacillaceae 0 274 0 1571 3 genus 2767893 1 1581 species 0 Lactobacillus buchneri 461 0 616 Lactobacillus curieae 1 species 1138822 1 species 152331 0 494 Lactobacillus parabuchneri 0 4654 1 20573 Lactobacillus 16 genus 1578 species 109790 1 Lactobacillus jensenii 627 0 1 52242 species 0 918 Lactobacillus gallinarum 4 no rank 2620435 0 1946 1545702 species 1 594 Lactobacillus sp. wkB8 0 0 Lactobacillus sp. CBA3606 453 1 species 2099789 2099788 species 1 490 Lactobacillus sp. CBA3605 0 409 Lactobacillus sp. D1501 0 species 2108362 1 Lactobacillus gasseri 1662 0 species 1596 1 1 1579 species 0 Lactobacillus acidophilus 816 1 1587 species 0 1236 Lactobacillus helveticus 1600 species 1 673 Lactobacillus acetotolerans 0 species 267818 1 853 Lactobacillus kefiranofaciens 0 0 1254 Lactobacillus amylovorus 1 species 1604 1 species 33959 0 Lactobacillus johnsonii 3333 0 Lactobacillus amylolyticus 531 1 species 83683 2070 Lactobacillus delbrueckii 0 species 1584 1 568 0 2767892 genus 1 species 240427 1 568 Lactobacillus paracollinoides 0 0 2022 1 2767876 genus 0 2022 Lactobacillus amylophilus 1 1603 species 2 genus 2767885 0 2232 0 1305 Lactobacillus sakei 1 1599 species 0 927 Lactobacillus curvatus 1 species 28038 0 1373 2 2767889 genus 1 375175 species 0 465 Lactobacillus backii 0 908 Lactobacillus coryniformis 1 species 1610 genus 2767877 1 625 0 1 148814 species 0 625 Lactobacillus kunkeei genus 2767881 2 951 0 1 species 53444 0 458 Lactobacillus lindneri 493 Lactobacillus sanfranciscensis 0 species 1625 1 0 2474 3 2767842 genus 1 species 60520 0 Lactobacillus paraplantarum 385 683 Lactobacillus pentosus 0 species 1589 1 species 1590 1 1406 Lactobacillus plantarum 0 3790 0 genus 2759736 3 Lactobacillus rhamnosus 932 0 47715 species 1 Lactobacillus paracasei 1132 0 species 1597 1 1 1582 species 0 1726 Lactobacillus casei 0 620 1 2767890 genus Lactobacillus hokkaidonensis 620 0 species 1193095 1 1360 0 2767886 genus 3 1 637971 species 0 Lactobacillus koreensis 359 species 1580 1 Lactobacillus brevis 648 0 species 267363 1 353 Lactobacillus zymae 0 3 genus 2742598 0 3501 0 882 Lactobacillus fermentum 1 species 1613 1 1598 species 0 Lactobacillus reuteri 1725 1 species 97478 0 Lactobacillus mucosae 894 6 2767879 genus 0 4825 Lactobacillus alimentarius 860 0 1602 species 1 1847728 species 1 Lactobacillus allii 650 0 0 Lactobacillus heilongjiangensis 763 1 1074467 species 0 792 Lactobacillus ginsenosidimutans 1 species 1007676 Lactobacillus farciminis 921 0 1612 species 1 839 Lactobacillus crustorum 0 species 392416 1 6 1253 genus 29 0 1 4177 Pediococcus 114090 species 1 583 Pediococcus inopinatus 0 1 51663 species 0 Pediococcus damnosus 746 1 1670797 species group 0 1210 1 species 1254 0 1210 Pediococcus acidilactici species 187452 1 640 Pediococcus claussenii 0 0 Pediococcus pentosaceus 969 1 species 1255 0 65603 4 genus 2767887 Lactobacillus agilis 1062 0 species 1601 1 1 species 89059 0 Lactobacillus acidipiscis 742 Lactobacillus salivarius 3493 0 1624 species 1 1 species 1623 0 60306 Lactobacillus ruminis family 81850 17 1 7517 Leuconostocaceae 0 39 0 15 1 2771 Weissella 6 genus 46255 1631871 species 1 Weissella jogaejeotgali 531 0 1 species 759620 0 636 Weissella ceti Weissella cibaria 573 0 137591 species 1 0 494 Weissella paramesenteroides 1 species 1249 0 Weissella koreensis 522 1 species 165096 9 genus 1243 0 21 4231 1 Leuconostoc 1246 species 1 Leuconostoc lactis 316 0 2685106 no rank 1 415 0 1 979982 species 0 Leuconostoc sp. C2 415 33964 species 1 521 Leuconostoc citreum 0 Leuconostoc garlicum 206 0 255248 species 1 species 1245 1 Leuconostoc mesenteroides 1028 0 species 1244 1 Leuconostoc gelidum 811 0 Leuconostoc kimchii 527 0 species 136609 1 386 Leuconostoc carnosum 0 1252 species 1 0 476 1 genus 46254 0 Oenococcus oeni 476 1 species 1247 0 930 1 no rank 263855 0 Lactobacillales bacterium 930 1 1993866 species Carnobacteriaceae 12501 1 0 15 family 186828 11 2747 genus 5 Carnobacterium 8538 1 36 0 2 257487 no rank 0 2644 208596 species 1 Carnobacterium sp. 17-4 1574 0 1564681 species 1 Carnobacterium sp. CP1 1070 0 1 species 2751 0 4407 Carnobacterium maltaromaticum 1 147709 species 0 1451 Carnobacterium inhibens 3 genus 1470540 0 2 Jeotgalibaca 1 2173 1444 0 no rank 2621505 1 Jeotgalibaca sp. PTS2502 1444 0 1903686 species 1 species 708126 1 Jeotgalibaca dankookensis 727 0 5 0 Marinilactibacillus 1 1775 2 191769 genus 2632303 no rank 1 1770 0 1 1911586 species 0 Marinilactibacillus sp. 15R 1770 20 81852 family 76 0 70240 1 Enterococcaceae 0 3 1184 1 Melissococcus 2 genus 33969 33970 species 1 1181 Melissococcus plutonius 0 12 genus 1350 0 6313 Enterococcus 64617 1 11312 Enterococcus faecalis 0 1351 species 1 2005703 species 1 1475 Enterococcus wangshanyuanii 0 37734 species 1 Enterococcus casseliflavus 681 0 2608891 no rank 3 2885 0 1 2060307 species 0 Enterococcus sp. FDAARGOS_375 1243 1 species 2060306 0 807 Enterococcus sp. FDAARGOS_163 0 Enterococcus sp. CR-Ec1 835 1 species 2057791 1 species 53346 0 1579 Enterococcus mundtii 0 Enterococcus faecium 35078 1 species 1352 0 1694 Enterococcus thailandicus 1 species 417368 1354 species 1 1679 Enterococcus hirae 0 1 species 53345 0 Enterococcus durans 1921 genus 51668 2 Tetragenococcus 1 1907 0 2 species 51669 1 Tetragenococcus halophilus 1905 0 0 19 Vagococcus 1 2456 3 genus 2737 1 633807 species 0 Vagococcus penaei 1064 species 519472 1 1373 Vagococcus teuberi 0 1 6189 Aerococcaceae 14 0 186827 family 8 6175 1 Aerococcus 0 388 genus 1375 7 1019 Aerococcus viridans 0 species 1377 1 1062 Aerococcus urinaeequi 0 species 51665 1 119206 species 1 956 Aerococcus sanguinicola 0 0 Aerococcus christensenii 1064 1 87541 species Aerococcus urinaehominis 814 0 128944 species 1 1 species 1376 0 872 Aerococcus urinae family 1300 49 Streptococcaceae 1 636540 0 4773 11121 0 Streptococcus 1 617817 43 1301 genus 150055 species 1 6045 Streptococcus lutetiensis 0 0 1990 Streptococcus parauberis 1 species 1348 28037 species 1 Streptococcus mitis 36834 0 Streptococcus pluranimalium 806 0 species 82348 1 1 1825069 species 0 Streptococcus marmotae 889 0 813 Streptococcus himalayensis 1 1888195 species 0 3232 Streptococcus gallolyticus 1 species 315405 8750 Streptococcus pseudopneumoniae 0 species 257758 1 species 1311 1 30371 Streptococcus agalactiae 0 1313 species 1 17173 Streptococcus pneumoniae 0 species 45634 1 Streptococcus cristatus 4806 0 832 Streptococcus halotolerans 0 1814128 species 1 888 Streptococcus macedonicus 0 species 59310 1 0 118228 Streptococcus salivarius 1 1304 species 1 1335 species 0 15995 Streptococcus equinus 2302 Streptococcus iniae 0 species 1346 1 1 species 1302 0 23554 Streptococcus gordonii 1307 species 1 29349 Streptococcus suis 0 1308 species 1 Streptococcus thermophilus 5592 0 Streptococcus acidominimus 4536 0 species 1326 1 Streptococcus pyogenes 3760 0 species 1314 1 0 Streptococcus pantholopis 1482 1 species 1811193 3 species group 671232 0 57768 1338 species 1 4971 Streptococcus intermedius 0 0 40797 Streptococcus anginosus 1 1328 species 0 Streptococcus constellatus 12000 1 76860 species 0 1435 Streptococcus mutans 1 species 1309 0 Streptococcus pasteurianus 4066 1 species 197614 2608887 no rank 7 93674 0 6390 Streptococcus sp. NPS 308 0 1902136 species 1 1839799 species 1 24142 Streptococcus sp. FDAARGOS_192 0 Streptococcus sp. I-P16 14600 0 1156433 species 1 1 712633 species 0 7992 Streptococcus sp. oral taxon 431 1 species 1759399 0 Streptococcus sp. A12 25038 1 species 1319 0 1108 Streptococcus sp. 'group B' 14404 Streptococcus sp. I-G2 0 1156431 species 1 1 species 1303 0 Streptococcus oralis 22603 3373 0 species group 119603 2 2178 Streptococcus equi 0 species 1336 1 Streptococcus dysgalactiae 1195 0 species 1334 1 1 species 1318 0 Streptococcus parasanguinis 91419 1 1305 species 0 Streptococcus sanguinis 5676 1 1349 species 0 968 Streptococcus uberis 0 Streptococcus merionis 776 1 400065 species 1 species 102684 0 6711 Streptococcus infantarius 1 13950 Lactococcus 0 18 genus 1357 5 Lactococcus piscium 1374 0 1364 species 1 Lactococcus lactis 9041 0 1358 species 1 Lactococcus garvieae 1333 0 1363 species 1 0 2184 Lactococcus raffinolactis 1 species 1366 0 11 Erysipelotrichia 1 79483 11 class 526524 0 22 Erysipelotrichales 79472 1 10 order 526525 128827 family 9 79450 1 Erysipelotrichaceae 449 0 2 191303 genus 23 0 Turicibacter 31279 1 0 31256 1 no rank 2638206 1 1712675 species 0 31256 Turicibacter sp. H121 37282 0 544447 no rank 1 Erysipelotrichaceae bacterium I46 37282 0 1834207 species 1 Faecalibaculum 5719 1 31 0 1729679 genus 2 5688 Faecalibaculum rodentium 0 species 1702221 1 Erysipelothrix 1 4721 121 0 1647 genus 3 1 1648 species 0 Erysipelothrix rhusiopathiae 2605 0 Erysipelothrix larvae 1995 1 1514105 species 84086 no rank 1 1039 0 endosymbiont 'TC1' of Trimyema compressum 1039 0 species 243899 1 no rank 33974 2 1488 0 10 0 Ndongobacter 1 1488 2 1930845 genus species 1871025 1 Ndongobacter massiliensis 1478 0 31 909932 class 98 0 Negativicutes 1 185068 42 0 20130 1 Acidaminococcales 5 1843488 order 1 20088 Acidaminococcaceae 50 0 909930 family 4 20038 1 Acidaminococcus 118 0 904 genus 3 1 species 905 0 7004 Acidaminococcus fermentans species 187327 1 Acidaminococcus intestini 12916 0 Selenomonadales 1 26518 88 0 909929 order 14 4244 1 Sporomusaceae 0 5 family 1843490 4 365348 genus 3 1 4239 Pelosinus 12 0 Pelosinus fermentans 2139 0 species 365349 1 2629460 no rank 1 2088 0 2088 Pelosinus sp. UFO1 0 484770 species 1 9 family 1843491 0 285 Selenomonadaceae 1 22186 Megamonas 1 3726 3 0 158846 genus 2 1 species 158847 0 Megamonas hypermegale 3723 6 970 genus 230 0 Selenomonas 18175 1 0 8885 3 2637378 no rank Selenomonas sp. oral taxon 920 2521 0 1884263 species 1 0 3668 Selenomonas sp. oral taxon 136 1 713030 species 1 species 712538 0 Selenomonas sp. oral taxon 478 2696 0 Selenomonas ruminantium 5816 1 971 species 69823 species 1 3244 Selenomonas sputigena 0 1 138322 Veillonellales 1771 0 1843489 order 11 31977 family 10 Veillonellaceae 136551 1 1988 0 Dialister 2520 1 0 67 genus 39948 2 2453 Dialister pneumosintes 0 39950 species 1 genus 909928 2 1363 1 Negativicoccus 0 2 0 1361 Negativicoccus massiliensis 1 species 1702287 9 0 1 121273 Veillonella 3 29465 genus species 248315 1 Veillonella rodentium 13029 0 29466 species 1 Veillonella parvula 108235 0 0 949 Megasphaera 1 9407 2 genus 906 8458 Megasphaera elsdenii 0 907 species 1 class 186801 221 9617866 1 Clostridia 0 391 0 5 Halanaerobiales 4864 1 11 order 53433 0 9 Halanaerobiaceae 2907 1 5 family 972 Halanaerobium 1890 1 7 0 2330 genus 3 Halanaerobium praevalens 966 0 2331 species 1 917 Halanaerobium hydrogeniformans 0 species 656519 1 1008 0 32636 genus 1 Halothermothrix orenii 1008 0 species 31909 1 12 0 Halobacteroidaceae 1952 1 5 53434 family genus 28186 2 1036 1 Acetohalobium 0 1 1035 Acetohalobium arabaticum 0 species 28187 1 genus 42417 2 904 1 Halobacteroides 0 1 Halobacteroides halobius 903 0 42422 species 1 165 186802 order 23568 0 1 9582003 Clostridiales family 186803 27 1 3588763 Lachnospiraceae 0 3278 1047895 0 186928 no rank 2 712991 species 1 Lachnospiraceae bacterium oral taxon 500 28692 0 [Eubacterium] rectale 1019203 0 species 39491 1 841 genus 2 612427 1 Roseburia 56 0 0 Roseburia hominis 612371 1 301301 species genus 698776 2 Cellulosilyticum 6325 1 0 7 29360 species 1 6318 Cellulosilyticum lentocellum 0 4 genus 1506553 0 746 Lachnoclostridium 1 167371 0 61703 1 2608895 no rank species 1834196 1 Lachnoclostridium sp. YL32 61703 0 1 66219 species 0 Lachnoclostridium phytofermentans 13474 1 1871021 species 0 91448 Lachnoclostridium phocaeense Herbinix 10200 1 0 9 genus 1663717 2 10191 Herbinix luporum 0 species 1679721 1 3 830 genus 76 0 30828 1 Butyrivibrio species 185008 1 14895 Butyrivibrio hungatei 0 Butyrivibrio proteoclasticus 15857 0 43305 species 1 1 2719231 genus 0 70275 [Clostridium] saccharolyticum 70275 0 species 84030 1 538770 1 Anaerostipes 0 245 genus 207244 2 1 species 649756 0 538525 Anaerostipes hadrus 0 15 Anaerotignum 6447 1 2 genus 2039240 Anaerotignum propionicum 6432 0 species 28446 1 0 252 Blautia 1 219753 3 genus 572511 1 1322 species 0 Blautia hansenii 157566 0 61935 1 2648079 no rank 1 species 1796616 0 Blautia sp. YL58 61935 1 2719313 genus 0 259101 1 208479 species 0 [Clostridium] bolteae 259101 414337 0 28050 genus 1 species 39485 1 [Eubacterium] eligens 414337 0 0 201756 1 2569097 genus 201756 [Eubacterium] hallii 0 species 39488 1 12 family 186804 0 1062 Peptostreptococcaceae 1 193347 2 186831 genus 12 0 1 1668 Acetoanaerobium 1 1511 species 0 Acetoanaerobium sticklandii 1656 1411023 no rank 1 2479 0 Peptostreptococcaceae bacterium oral taxon 929 2479 0 2081703 species 1 7 0 Filifactor 1 3195 2 44259 genus species 143361 1 3188 Filifactor alocis 0 Clostridioides 1 176074 413 0 1870884 genus 2 1 species 1496 0 Clostridioides difficile 175661 2 1849828 genus 3 0 1 6672 Paeniclostridium 0 6669 Paeniclostridium sordellii 1 1505 species genus 1481960 2 1 2197 Peptoclostridium 0 3 0 2194 Peptoclostridium acidaminophilum 1 species 1731 0 96 Peptococcaceae 1 33617 29 family 186807 4 79206 genus 133 0 4533 1 Desulfosporosinus species 885581 1 Desulfosporosinus acidiphilus 1468 0 0 Desulfosporosinus meridiei 1375 1 79209 species 1 1563 species 0 1557 Desulfosporosinus orientis 5940 1 Dehalobacter 42 0 56112 genus 4 3961 0 no rank 2635733 2 1131462 species 1 Dehalobacter sp. CF 2121 0 0 Dehalobacter sp. DCA 1840 1 species 1147129 Dehalobacter restrictus 1937 0 species 55583 1 3 0 Thermincola 1 1147 2 278993 genus 1 species 863643 0 Thermincola potens 1144 2282740 genus 1 1856 0 102134 species 1 1856 Desulfotomaculum gibsoniae 0 2 51196 genus 3 0 Syntrophobotulus 1687 1 1684 Syntrophobotulus glycolicus 0 51197 species 1 5 genus 1562 0 139 1 5668 Desulfotomaculum 0 1088 Desulfotomaculum reducens 1 59610 species 1 1833852 species 0 Desulfotomaculum ferrireducens 1318 1565 species 1 1111 Desulfotomaculum nigrificans 0 1 1564 species 0 2012 Desulfotomaculum ruminis 1 1298 Candidatus Desulforudis 7 0 471826 genus 2 species 471827 1 1291 Candidatus Desulforudis audaxviator 0 2 genus 51514 0 5 Dehalobacterium 2825 1 species 51515 1 2820 Dehalobacterium formicoaceticum 0 0 1225 1 2282742 genus 1 58138 species 0 1225 Desulfotomaculum acetoxidans 5 genus 36853 0 54 Desulfitobacterium 1 7342 1 36854 species 0 1641 Desulfitobacterium dehalogenans 49338 species 1 Desulfitobacterium hafniense 3120 0 Desulfitobacterium dichloroeliminans 1408 0 species 233055 1 species 142877 1 1119 Desulfitobacterium metallireducens 0 0 226113 10 no rank 538999 0 988 64415 1 Intestinimonas 2 genus 1392389 0 Intestinimonas butyriciproducens 63427 1 species 1297617 3 539000 family 9 0 Clostridiales Family XVII. Incertae Sedis 1 2287 73918 genus 2 Thermaerobacter 1 2278 30 0 0 2248 Thermaerobacter marianensis 1 73919 species 543314 family 4 Clostridiales Family XIII. Incertae Sedis 10619 1 24 0 2 86331 genus 23 0 1 4042 Mogibacterium Mogibacterium diversum 4019 0 114527 species 1 0 [Eubacterium] sulci 6553 1 species 143393 148792 0 2717089 genus 1 0 148792 Mordavella sp. Marseille-P3756 1 species 2086584 family 2304686 12 51938 0 Ruminiclostridium 1 5100 0 405 genus 1508657 2 0 4695 [Clostridium] cellulolyticum 1 species 1521 2580 0 genus 2304693 1 0 [Clostridium] thermosuccinogenes 2580 1 84032 species 8732 0 2304692 genus 3 1677857 species 1 Herbivorax saccincola 2015 0 0 Ruminiclostridium thermocellum 3152 1 1515 species 3565 [Clostridium] clariflavum 0 288965 species 1 2305130 no rank 1 28279 0 species 1834198 1 28279 Ruminiclostridium sp. KB18 0 genus 236752 2 Fastidiosipila 1 1265 0 7 Fastidiosipila sanguinis 1258 0 236753 species 1 Mageeibacillus 1 3136 9 0 1637257 genus 2 1 884684 species 0 3127 Mageeibacillus indolicus 1 genus 2304691 0 2846 0 2846 [Clostridium] stercorarium 1 species 1510 20 0 1 3029 Symbiobacteriaceae 3 543349 family 2 2733 genus 8 0 Symbiobacterium 3009 1 0 Symbiobacterium thermophilum 3001 1 2734 species Eubacteriaceae 1 26598 19 0 186806 family 5 2 genus 33951 0 7 Acetobacterium 2103 1 33952 species 1 Acetobacterium woodii 2096 0 0 1071 Eubacterium 24476 1 2 genus 1730 0 23405 Eubacterium limosum 1 1736 species 41 31979 family 1014 0 1 179228 Clostridiaceae 1 1981033 genus 0 Mordavella 259 1485 genus 30 167989 1 Clostridium 1288 0 4299 Clostridium kluyveri 0 species 1534 1 species 1494 1 Clostridium cochlearium 5556 0 1 217159 species 0 3491 Clostridium carboxidivorans 0 2065 Clostridium formicaceticum 1 species 1497 1 1538 species 0 2766 Clostridium ljungdahlii 1 species 36745 0 Clostridium saccharoperbutylacetonicum 5876 1 1548 species 0 Clostridium scatologenes 3435 0 Clostridium autoethanogenum 3045 1 84023 species 0 Clostridium baratii 5050 1 species 1561 84022 species 1 Clostridium aceticum 2018 0 1493 species 1 3922 Clostridium cellulovorans 0 1 species 1509 0 2190 Clostridium sporogenes species 394958 1 3207 Clostridium taeniosporum 0 0 2883 Clostridium chauvoei 1 46867 species 4367 Clostridium saccharobutylicum 0 species 169679 1 species 1491 1 Clostridium botulinum 19044 0 238834 species 1 2513 Clostridium estertheticum 0 1520 species 1 6383 Clostridium beijerinckii 0 2374 Clostridium acetobutylicum 0 species 1488 1 4655 Clostridium tetani 0 1513 species 1 0 2311 Clostridium tyrobutyricum 1 1519 species 1 1542 species 0 2347 Clostridium novyi Clostridium butyricum 6669 0 1492 species 1 0 5341 Clostridium pasteurianum 1 species 1501 1 species 29341 0 2598 Clostridium argentinense 1 species 1216932 0 Clostridium bornimense 3185 18000 Clostridium perfringens 0 species 1502 1 37111 0 2614128 no rank 2 Clostridium sp. SY8519 33056 0 1042156 species 1 1 755731 species 0 4055 Clostridium sp. BNL1100 114627 genus 3 1 3212 Alkaliphilus 4 0 461876 species 1 Alkaliphilus oremlandii 1409 0 0 1799 Alkaliphilus metalliredigens 1 species 208226 0 49 Geosporobacter 3380 1 2 genus 390805 0 Geosporobacter ferrireducens 3331 1 species 1424294 4 49082 genus 27 0 Candidatus Arthromitus 1 3374 3 2638829 no rank 0 3347 0 1153 Candidatus Arthromitus sp. SFB-mouse-NL 1 species 1508644 1041504 species 1 Candidatus Arthromitus sp. SFB-rat-Yit 1012 0 Candidatus Arthromitus sp. SFB-mouse 1182 0 49118 species 1 Christensenellaceae 1 38540 95 0 990719 family 3 Christensenella 38445 1 903 0 990721 genus 2 1805714 species 1 37542 Christensenella massiliensis 0 3 31984 family 30 0 1 2804 Heliobacteriaceae 2 2697 genus 81 0 2774 1 Heliobacterium 0 Heliobacterium modesticaldum 2693 1 35701 species 3 family 68298 0 2 Syntrophomonadaceae 1 1241 0 782 1 862 genus 0 Syntrophomonas wolfei 782 1 863 species genus 129001 1 457 0 species 86170 1 Syntrophothermus lipocalidus 457 0 13 family 541000 0 883 5196841 1 Ruminococcaceae genus 1890281 1 2 Herbivorax 0 0 3601 1 no rank 552397 0 3601 [Clostridium] cellulosi 1 29343 species 2 216851 genus 2138 0 Faecalibacterium 4721126 1 4718988 Faecalibacterium prausnitzii 0 853 species 1 0 10535 1 2305133 no rank Ruminococcaceae bacterium CPB6 10535 0 1572656 species 1 genus 1263 3 52922 1 Ruminococcus 0 79 1 species 1160721 0 42645 Ruminococcus bicirculans 1 species 1264 0 Ruminococcus albus 10198 2 genus 253238 0 7 Ethanoligenens 11815 1 1 species 253239 0 11808 Ethanoligenens harbinense 0 75 Flavonifractor 1 395957 2 genus 946234 0 395882 Flavonifractor plautii 1 species 292800 3 family 216572 0 7 1 16376 Oscillospiraceae 0 43 16369 1 Oscillibacter 2 genus 459786 0 Oscillibacter valericigenes 16326 1 351091 species 0 3 998 1 Natranaerobiales 4 order 485256 6 0 Natranaerobiaceae 995 1 3 485255 family 67 0 Natranaerobius 1 989 2 375928 genus Natranaerobius thermophilus 922 0 species 375929 1 68295 order 37 27565 1 Thermoanaerobacterales 29 0 0 33 13805 1 Thermoanaerobacteraceae 19 family 186814 0 1076 1 129957 genus Carboxydothermus hydrogenoformans 1076 0 species 129958 1 922 1 Caldanaerobacter 7 0 249529 genus 2 species 911092 1 915 Caldanaerobacter subterraneus 0 1998 0 42857 no rank 4 2 genus 42837 0 21 1 795 Ammonifex 0 Ammonifex degensii 774 1 species 42838 1203 1 Moorella 0 4 genus 44260 2 Moorella thermoacetica 1199 0 species 1525 1 2 genus 140458 0 4 1 901 Thermacetogenium 1 85874 species 0 Thermacetogenium phaeum 897 9 genus 1754 0 312 Thermoanaerobacter 1 8875 Thermoanaerobacter italicus 1190 0 108150 species 1 Thermoanaerobacter brockii 1210 0 29323 species 1 Thermoanaerobacter wiegelii 985 0 46354 species 1 1 species 583357 0 870 Thermoanaerobacter mathranii 2 2636821 no rank 0 2231 1144 Thermoanaerobacter sp. X513 0 species 573062 1 399726 species 1 1087 Thermoanaerobacter sp. X514 0 1 species 496866 0 1210 Thermoanaerobacter pseudethanolicus 0 867 Thermoanaerobacter kivui 1 species 2325 543372 family 3 Thermoanaerobacterales Family IV. Incertae Sedis 1390 1 9 0 1381 1 Mahella 3 0 252965 genus 2 252966 species 1 1378 Mahella australiensis 0 family 227387 1 349 0 349 0 genus 227388 1 Thermodesulfobium narugense 349 0 species 184064 1 11992 1 Thermoanaerobacterales Family III. Incertae Sedis 0 19 family 543371 13 genus 44000 9 8132 1 Caldicellulosiruptor 0 164 species 31899 1 1106 Caldicellulosiruptor bescii 0 44001 species 1 Caldicellulosiruptor saccharolyticus 1006 0 species 413889 1 911 Caldicellulosiruptor kronotskyensis 0 1 52766 species 0 Caldicellulosiruptor lactoaceticus 968 52765 species 1 Caldicellulosiruptor kristjanssonii 950 0 Caldicellulosiruptor owensensis 952 0 species 55205 1 907 Caldicellulosiruptor obsidiansis 0 species 717609 1 0 Caldicellulosiruptor hydrothermalis 1168 1 413888 species 11 0 Thermoanaerobacterium 1 3841 3 28895 genus 0 Thermoanaerobacterium thermosaccharolyticum 2547 1 1517 species species 29329 1 Thermoanaerobacterium xylanolyticum 1283 0 2045 0 order 2770089 3 2 family 2770093 0 901 901 1 Thermosediminibacter 0 8 genus 291988 2 1 species 291990 0 893 Thermosediminibacter oceani family 2770092 1 1144 0 0 1144 1 499228 genus species 499229 1 1144 Tepidanaerobacter acetatoxydans 0 class 1737404 19 1 27096 Tissierellia 0 10 1177 0 no rank 1737407 2 0 16 1 1177 Ezakiella 2 genus 1582879 species 1852374 1 1161 Ezakiella massiliensis 0 order 1737405 16 Tissierellales 25909 1 0 879 7419 0 Peptoniphilaceae 1 23240 12 1570339 family Murdochiella 1 7263 15 0 1161127 genus 2 0 Murdochiella vaginalis 7248 1 1852373 species 1 1350 Peptoniphilus 3 0 162289 genus 2 0 1347 1 no rank 2637196 0 1347 Peptoniphilus sp. ING2-D1G 1 1912856 species 3 genus 165779 0 7 1 2568 Anaerococcus 0 1159 Anaerococcus prevotii 1 33034 species 1402 Anaerococcus mediterraneensis 0 species 1870984 1 12 0 1957 1 Parvimonas 2 543311 genus species 33033 1 1945 Parvimonas micra 0 Finegoldia 1 2683 0 5 genus 150022 2 1260 species 1 Finegoldia magna 2678 0 2042895 family 3 1790 1 Gottschalkiaceae 6 0 2 genus 1505664 0 4 1 1784 Gottschalkia 1556 species 1 1780 Gottschalkia acidurici 0 1509 0 phylum 200938 5 5 class 118001 0 5 1 1509 Chrysiogenetes 189769 order 4 Chrysiogenales 1504 1 53 0 3 189770 family 4 0 1 1451 Chrysiogenaceae 2 genus 393029 0 1 1 1447 Desulfurispirillum 1 936456 species 0 Desulfurispirillum indicum 1446 phylum 200783 24 4675 0 24 class 187857 0 15 Aquificae 1 4675 0 11 Desulfurobacteriales 702 1 4 order 1485951 Desulfurobacteriaceae 691 1 2 0 558314 family 3 177 0 genus 171868 1 species 228745 1 177 Thermovibrio ammonificans 0 0 512 1 64159 genus 0 512 Desulfurobacterium thermolithotrophum 1 species 64160 19 order 32069 0 1 1 3958 Aquificales Aquificaceae 2064 1 0 1 family 64898 12 0 1 Thermocrinis 192 1 3 genus 75905 species 136094 1 Thermocrinis albus 77 0 1 species 75906 0 Thermocrinis ruber 114 genus 939 1 106 0 species 940 1 Hydrogenobacter thermophilus 106 0 6 168657 genus 37 0 1 1645 Hydrogenobaculum 5 no rank 2622382 0 1608 1 species 547145 0 Hydrogenobaculum sp. SHO 321 0 Hydrogenobaculum sp. HO 321 1 547144 species 0 Hydrogenobaculum sp. 3684 321 1 species 547143 0 324 Hydrogenobaculum sp. Y04AAS1 1 380749 species 0 Hydrogenobaculum sp. SN 321 1 species 547146 120 0 2713 genus 1 0 120 Aquifex aeolicus 1 63363 species family 224027 4 Hydrogenothermaceae 1638 1 0 3 2 genus 212790 0 1283 species 309806 1 482 Sulfurihydrogenibium azorense 0 1 2619248 no rank 0 801 0 Sulfurihydrogenibium sp. YO3AOP1 801 1 436114 species 182899 genus 1 352 0 Persephonella marina 352 0 309805 species 1 0 255 2 90150 no rank 0 4 Thermosulfidibacter 1 255 2 genus 412592 0 Thermosulfidibacter takaii 251 1 species 412593 654 0 2323 no rank 2 2 1783234 clade 0 654 0 302 1 phylum 95818 no rank 1895827 1 302 0 0 302 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 2056494 species 1 95901 clade 0 352 0 352 1 class 2497643 2497644 order 1 352 0 family 2497645 1 352 0 1 genus 1551504 0 352 1 673862 species 0 352 Candidatus Babela massiliensis 0 12157 42 phylum 200918 Thermotogae 1 12157 0 23 class 188708 42 0 1500 5 order 1643946 Kosmotogaceae 1500 1 0 3 family 1643948 5 genus 1184396 2 1 955 Mesotoga 0 1 1 1184387 species 0 Mesotoga prima 954 542 0 651456 genus 2 0 Kosmotoga olearia 230 1 species 651457 0 312 Kosmotoga pacifica 1 species 1330330 2419 order 28 Thermotogales 7992 1 4 0 188709 family 17 1 4745 Thermotogaceae 22 0 5 genus 1643951 0 84 Pseudothermotoga 1 1493 1 38322 species 0 Pseudothermotoga elfii 368 341 Pseudothermotoga thermarum 0 species 119394 1 387 Pseudothermotoga lettingae 0 177758 species 1 species 57487 1 Pseudothermotoga hypogea 313 0 0 84 3230 1 Thermotoga 11 genus 2335 93929 species 1 280 Thermotoga petrophila 0 2336 species 1 Thermotoga maritima 212 0 0 Thermotoga caldifontis 282 1 1508419 species 292 Thermotoga naphthophila 0 species 93930 1 0 417 Thermotoga profunda 1 1508420 species 2631113 no rank 4 1329 0 0 300 Thermotoga sp. RQ2 1 species 126740 1 species 1157948 0 321 Thermotoga sp. 2812B Thermotoga sp. RQ7 369 0 126738 species 1 0 Thermotoga sp. Cell2 339 1 1157947 species 0 334 Thermotoga neapolitana 1 species 2337 10 family 1643950 0 6 3243 1 Fervidobacteriaceae genus 2422 4 Fervidobacterium 1067 1 0 3 0 Fervidobacterium islandicum 229 1 2423 species 1 93466 species 0 490 Fervidobacterium pennivorans 1 2424 species 0 Fervidobacterium nodosum 345 genus 2420 5 Thermosipho 2170 1 0 8 46541 species 1 Thermosipho melanesiensis 615 0 species 2421 1 Thermosipho africanus 565 0 982 0 2676525 no rank 2 1 1437364 species 0 Thermosipho sp. 1070 501 species 1462747 1 Thermosipho sp. 1063 481 0 1643947 order 8 2642 1 Petrotogales 5 0 2637 0 family 1643949 7 genus 160798 3 1762 1 Marinitoga 0 9 1 species 149715 0 886 Marinitoga piezophila 867 0 2640159 no rank 1 1545835 species 1 Marinitoga sp. 1137 867 0 3 0 1 502 Defluviitoga 2 1511648 genus 0 Defluviitoga tunisiensis 499 1 1006576 species Petrotoga 1 373 1 0 28236 genus 2 1 species 69499 0 Petrotoga mobilis 372 Proteobacteria 2519467 1 641 0 1224 phylum 1997 Zetaproteobacteria 1 1430 0 6 class 580370 6 5 order 580371 0 11 Mariprofundales 1424 1 3 0 Mariprofundaceae 1413 1 4 580372 family genus 377315 3 Mariprofundus 1410 1 0 7 0 Mariprofundus aestuarium 763 1 species 1921086 1921087 species 1 Mariprofundus ferrinatatus 640 0 476 0 328182 1 Betaproteobacteria 349 28216 class 1055 0 33809 no rank 2 1904640 species 1 853 Betaproteobacteria bacterium GR16-43 0 1 543913 species 0 202 beta proteobacterium CB 0 445 28633 1 Neisseriales 35 order 206351 0 196 Chromobacteriaceae 13247 1 13 family 1499392 1015 1 Jeongeupia 31 0 885864 genus 2 1 2619593 no rank 0 984 1 1906741 species 0 Jeongeupia sp. USM3 984 0 28 1677 1 Pseudogulbenkiania 2 genus 568394 1 no rank 2642558 0 1649 species 748280 1 1649 Pseudogulbenkiania sp. NH8B 0 genus 187 2 1 1437 Aquaspirillum 0 3 1 2620219 no rank 0 1434 1 1938604 species 0 Aquaspirillum sp. LM1 1434 genus 168470 2 1525 1 Laribacter 0 27 1498 Laribacter hongkongensis 0 168471 species 1 no rank 90153 4 7397 0 7397 1 Chromobacterium 135 0 535 genus 4 2180 0 2641838 no rank 1 2180 Chromobacterium sp. ATCC 53434 0 species 2059672 1 species 1108595 1 2873 Chromobacterium vaccinii 0 species 536 1 Chromobacterium violaceum 2209 0 Neisseriaceae 1 14941 220 0 481 family 21 1284 1 Vitreoscilla 0 34 genus 59 3 63 species 1 Vitreoscilla filiformis 949 0 0 301 1 2627922 no rank 1 species 96942 0 301 Vitreoscilla sp. C1 470 0 1193515 genus 1 1 species 1196083 0 Snodgrassella alvi 470 473 0 421605 no rank 1 1 2052837 species 0 473 Neisseriaceae bacterium DSM 100970 0 345 1 71 genus 1 species 72 0 345 Simonsiella muelleri 2 538 genus 8 0 Eikenella 1319 1 539 species 1 1311 Eikenella corrodens 0 12 genus 482 0 269 Neisseria 1 10830 964 Neisseria lactamica 0 species 486 1 1960 0 2623750 no rank 2 1853276 species 1 Neisseria sp. 10022 633 0 Neisseria sp. KEM232 1327 0 655307 species 1 Neisseria zoodegmatis 898 0 326523 species 1 954 Neisseria sp. 10023 0 1853278 species 1 487 species 1 1910 Neisseria meningitidis 0 1003 Neisseria sicca 0 species 490 1 0 549 Neisseria elongata 1 species 495 species 28091 1 668 Neisseria weaveri 0 682 Neisseria gonorrhoeae 0 485 species 1 0 973 Neisseria mucosa 1 488 species order 32003 44 1 13992 Nitrosomonadales 0 107 1 4388 Nitrosomonadaceae 0 23 family 206379 12 4 genus 35798 0 14 1867 1 Nitrosospira 1288494 species 1 Nitrosospira lacus 675 0 1 species 1231 0 Nitrosospira multiformis 508 1 35799 species 0 670 Nitrosospira briensis genus 914 7 Nitrosomonas 2498 1 0 11 0 336 Nitrosomonas communis 1 species 44574 1 species 915 0 Nitrosomonas europaea 448 916 species 1 514 Nitrosomonas eutropha 0 1 44577 species 0 456 Nitrosomonas ureae 2 no rank 2609265 0 733 1 261292 species 0 502 Nitrosomonas sp. Is79A3 0 Nitrosomonas sp. AL212 231 1 153948 species 2323 1 Sterolibacteriaceae 44 0 2008793 family 5 30 0 1 945 Methyloversatilis 2 378210 genus 915 0 no rank 2639971 1 species 1842540 1 Methyloversatilis sp. RAC08 915 0 1 1334 Sulfuritalea 41 0 1054211 genus 2 1 species 748811 0 1293 Sulfuritalea hydrogenivorans 90627 family 5 Gallionellaceae 1 1835 37 0 0 16 Gallionella 1 723 2 genus 96 species 370405 1 Gallionella capsiferriformans 707 0 2 314343 genus 48 0 1 1075 Sideroxydans 63745 species 1 1027 Sideroxydans lithotrophicus 0 14 32011 family 16 0 3328 1 Methylophilaceae 1 1241 Methylovorus 11 0 81682 genus 3 1 2634027 no rank 0 565 565 Methylovorus sp. MP688 0 species 887061 1 0 665 Methylovorus glucosotrophus 1 species 266009 Methylotenera 548 1 3 0 359407 genus 3 284 Methylotenera mobilis 0 species 359408 1 1055487 species 1 Methylotenera versatilis 261 0 404 genus 2 654 1 Methylobacillus 1 0 1 species 405 0 653 Methylobacillus flagellatus Methylophilus 1 410 0 9 genus 16 2 401 0 no rank 2630143 1 401 Methylophilus sp. TWE2 0 1662285 species 1 Candidatus Methylopumilus 459 1 0 2 genus 1679002 3 0 248 Candidatus Methylopumilus planktonicus 1 species 1581557 1 species 1581680 0 209 Candidatus Methylopumilus turicensis 0 25 Thiobacillaceae 594 1 3 family 2008790 1 569 Thiobacillus 0 5 genus 919 2 Thiobacillus denitrificans 564 0 species 36861 1 family 2772226 4 1417 0 2 genus 935200 0 24 Sulfuricella 646 1 species 649841 1 Sulfuricella denitrificans 622 0 0 35 Sulfuriferula 1 771 2 genus 1778653 2637784 no rank 1 736 0 Sulfuriferula sp. AH1 736 0 1985873 species 1 0 2099 11 no rank 119066 22 0 189384 genus 1 1 species 189385 0 Candidatus Tremblaya princeps 22 genus 1301080 1 59 0 Candidatus Nasuia deltocephalinicola 59 0 1160784 species 1 0 18 963 1 Kinetoplastibacterium 6 genus 33055 33056 species 1 240 Candidatus Kinetoplastibacterium crithidii 0 1 994696 species 0 158 Candidatus Kinetoplastibacterium oncopeltii 0 Candidatus Kinetoplastibacterium desouzaii 274 1 species 994692 Candidatus Kinetoplastibacterium galatii 131 0 species 994695 1 233181 species 1 142 Kinetoplastibacterium blastocrithidii 0 125 0 1381133 genus 1 1 species 669502 0 125 Candidatus Profftella armatura Candidatus Accumulibacter 930 1 81 0 327159 genus 2 849 Candidatus Accumulibacter phosphatis 0 327160 species 1 22 order 206389 0 227 Rhodocyclales 1 16637 6 family 75787 0 54 3796 1 Rhodocyclaceae genus 146937 2 1 1971 Azospira 0 90 Azospira oryzae 1881 0 species 146939 1 1014 0 no rank 75788 1 1898103 species 1 1014 Rhodocyclaceae bacterium 0 genus 551759 2 1 757 Aromatoleum 0 26 551760 species 1 Aromatoleum aromaticum 731 0 2008794 family 12 Zoogloeaceae 11675 1 315 0 6635 1 Thauera 0 177 genus 33057 6 1 species 1134435 0 1519 Thauera humireducens species 96773 1 1021 Thauera chlorobenzoica 0 species 59405 1 Thauera aromatica 1038 0 no rank 2609274 2 2880 0 species 2005884 1 1292 Thauera sp. K11 0 Thauera sp. MZ1T 1588 0 85643 species 1 Azoarcus 1 4725 0 186 genus 12960 5 1 species 2067960 0 Azoarcus sp. SY39 1075 0 2477 2 2629479 no rank 1 species 198107 0 Azoarcus sp. CIB 1198 0 Azoarcus sp. KH32C 1279 1 748247 species Azoarcus olearius 987 0 species 418699 1 3 2008795 family 21 0 939 1 Azonexaceae 1 918 Dechloromonas 0 8 genus 73029 2 259537 species 1 910 Dechloromonas aromatica 0 234 80840 order 3003 0 265290 1 Burkholderiales Comamonadaceae 64943 1 1375 0 80864 family 58 Melaminivora 1565 1 0 35 genus 1649468 2 0 1530 1 no rank 2641902 0 1530 Melaminivora sp. SC2-9 1 2109913 species 0 39 Comamonas 5636 1 4 genus 283 Comamonas serinivorans 1195 0 1082851 species 1 0 Comamonas testosteroni 3049 1 species 285 1 species 225992 0 Comamonas kerstersii 1353 5 34072 genus 157 0 8680 1 Variovorax 1 species 436515 0 1610 Variovorax boronicumulans 3826 Variovorax paradoxus 0 34073 species 1 663243 no rank 2 3087 0 0 2036 Variovorax sp. PMC12 1 2126319 species 1795631 species 1 1051 Variovorax sp. PAMC 28711 0 665874 genus 3 1 1179 Limnohabitans 14 0 0 1165 2 2626134 no rank species 1678129 1 377 Limnohabitans sp. 103DPR2 0 1678128 species 1 Limnohabitans sp. 63ED37-2 788 0 11236 1 Acidovorax 509 0 12916 genus 9 0 Acidovorax citrulli 1255 1 species 80869 1 species 80867 0 Acidovorax avenae 1450 species 721785 1 Acidovorax ebreus 1214 0 553814 species 1 Acidovorax sp. NA3 1205 0 2684926 no rank 4 5603 0 1 species 358220 0 Acidovorax sp. KKS102 1506 1475 Acidovorax sp. RAC01 0 1842533 species 1 1 1858609 species 0 Acidovorax sp. T1 1221 species 232721 1 Acidovorax sp. JS42 1401 0 0 17 1 1257 Verminephrobacter 2 genus 364316 1240 Verminephrobacter eiseniae 0 364317 species 1 0 1653 1 2678886 genus species 2116657 1 Melaminivora sp. SC2-7 1653 0 genus 238749 2 Diaphorobacter 1 1180 0 10 Diaphorobacter polyhydroxybutyrativorans 1170 0 1546149 species 1 174951 genus 2 Ramlibacter 3246 1 26 0 0 Ramlibacter tataouinensis 3220 1 species 94132 1 1436289 genus 0 589 species 1436290 1 Candidatus Symbiobacter mobilis 589 0 1538 0 genus 2490452 2 species 1458425 1 791 Comamonadaceae bacterium A1 0 species 1458426 1 747 Comamonadaceae bacterium B1 0 3 219181 genus 31 0 Ottowia 1 2582 1 no rank 2645081 0 1175 1 species 1658672 0 Ottowia sp. oral taxon 894 1175 species 2109914 1 Ottowia sp. KADR8-3 1376 0 Delftia 9675 1 0 300 genus 80865 5 2 no rank 2613839 0 4816 Delftia sp. Cs1-4 2590 0 species 742013 1 Delftia sp. HK171 2226 0 species 1920191 1 Delftia tsuruhatensis 2439 0 180282 species 1 1 80866 species 0 Delftia acidovorans 2120 47420 genus 4 1 3789 Hydrogenophaga 64 0 Hydrogenophaga crassostreae 746 0 1763535 species 1 no rank 2610897 2 2979 0 species 795665 1 Hydrogenophaga sp. PBC 1501 0 1842537 species 1 Hydrogenophaga sp. RAC07 1478 0 12 0 Simplicispira 1003 1 2 352450 genus species 2109915 1 Simplicispira sp. SC1-8 991 0 0 18 Polaromonas 2402 1 3 genus 52972 species 216465 1 1352 Polaromonas naphthalenivorans 0 no rank 2638319 1 1032 0 0 1032 Polaromonas sp. JS666 1 296591 species Alicycliphilus 1 1861 0 27 genus 201096 2 0 Alicycliphilus denitrificans 1834 1 species 179636 1 4497 Rhodoferax 42 0 28065 genus 5 species 1484693 1 Rhodoferax saidenbachensis 1257 0 1 species 81479 0 Rhodoferax antarcticus 870 1 species 192843 0 Rhodoferax ferrireducens 853 1475 Rhodoferax koreense 0 species 1842727 1 0 15024 17 no rank 224471 32012 genus 2 Thiomonas 1334 1 27 0 926 species 1 1307 Thiomonas intermedia 0 2 genus 93681 0 77 1 1887 Roseateles 1 species 76731 0 1810 Roseateles depolymerans genus 88 2 Leptothrix 1546 1 0 43 0 1503 Leptothrix cholodnii 1 34029 species 2 genus 28067 0 106 2532 1 Rubrivivax 1 species 28068 0 2426 Rubrivivax gelatinosus 2 212743 genus 136 0 1570 1 Rhizobacter 946333 species 1 Rhizobacter gummiphilus 1434 0 112 0 1 1708 Mitsuaria 2 65047 genus 1 2648776 no rank 0 1596 0 1596 Mitsuaria sp. 7 1 1658665 species 1434 1 Paucibacter 0 49 genus 318147 2 2642959 no rank 1 1385 0 Paucibacter sp. KCTC 42545 1385 0 1768242 species 1 1447 [Polyangium] brachysporum 0 species 413882 1 2 genus 316612 0 55 Methylibium 1 1566 1 105560 species 0 Methylibium petroleiphilum 1511 family 75682 28 Oxalobacteraceae 30234 1 0 287 6 genus 963 0 292 Herbaspirillum 1 7896 species 92645 1 2034 Herbaspirillum frisingense 0 2624150 no rank 1 795 0 2025949 species 1 Herbaspirillum sp. meg3 795 0 80842 species 1 Herbaspirillum rubrisubalbicans 1547 0 species 341045 1 1094 Herbaspirillum hiltneri 0 964 species 1 2134 Herbaspirillum seropedicae 0 108 0 Janthinobacterium 1 6434 7 29580 genus 0 4008 4 no rank 2610881 species 1938606 1 1029 Janthinobacterium sp. LM6 0 1 1236179 species 0 Janthinobacterium sp. B9-8 705 375286 species 1 711 Janthinobacterium sp. Marseille 0 1644131 species 1 Janthinobacterium sp. 1_2014MBL_MicDiv 1563 0 55508 species 1 986 Janthinobacterium agaricidamnosum 0 0 Janthinobacterium svalbardensis 1332 1 368607 species 19 0 1071 1 Herminiimonas 3 303379 genus 484 Herminiimonas arsenitoxidans 0 species 1809410 1 1 204773 species 0 568 Herminiimonas arsenicoxydans 1 8842 Massilia 229 0 149698 genus 6 1 species 2072590 0 1992 Massilia sp. ZMN-3 0 Massilia putida 1564 1 1141883 species 0 3607 2 no rank 2609279 1 species 1678028 0 2133 Massilia sp. NR 4-1 1 species 1707785 0 Massilia sp. WG5 1474 0 1450 Massilia sp. B2 1 2045208 species 1 4653 Collimonas 111 0 202907 genus 4 0 Collimonas arenae 1747 1 species 279058 1 279113 species 0 Collimonas pratensis 1509 1 species 158899 0 Collimonas fungivorans 1286 1 genus 846 0 1051 1 species 847 0 Oxalobacter formigenes 1051 1 89031 Burkholderiaceae 0 644 family 119060 84 Pandoraea 7966 1 0 130 genus 93217 10 93220 species 1 751 Pandoraea pnomenusa 0 0 998 Pandoraea vervacti 1 species 656178 species 93219 1 939 Pandoraea norimbergensis 0 656179 species 1 741 Pandoraea faecigallinarum 0 714 Pandoraea sputorum 0 93222 species 1 1 93221 species 0 Pandoraea pulmonicola 927 Pandoraea oxalativorans 952 0 species 573737 1 1 93218 species 0 Pandoraea apista 949 0 865 Pandoraea thiooxydans 1 species 445709 1 15058 Cupriavidus 554 0 106589 genus 9 1 248026 species 0 Cupriavidus pinatubonensis 1220 1 species 68895 0 1571 Cupriavidus basilensis 106590 species 1 Cupriavidus necator 2729 0 2198 Cupriavidus sp. USMAA1020 0 367825 species 1 0 Cupriavidus metallidurans 1282 1 species 119219 2 2640874 no rank 0 4349 876364 species 1 2380 Cupriavidus sp. USMAA2-4 0 0 Cupriavidus sp. USMAHM13 1969 1 species 1389192 1155 Cupriavidus gilardii 0 species 82541 1 4 genus 44013 0 5 Polynucleobacter 1 831 151 Polynucleobacter necessarius 0 species 576610 1 1 species 576611 0 Polynucleobacter asymbioticus 418 1 1835254 species 0 257 Polynucleobacter duraquae Paraburkholderia 1 11041 166 0 1822464 genus 12 species 169430 1 1051 Paraburkholderia hospita 0 species 36873 1 937 Paraburkholderia xenovorans 0 819 Paraburkholderia terrae 0 311230 species 1 0 Paraburkholderia aromaticivorans 1202 1 2026199 species 1 252970 species 0 715 Paraburkholderia phenoliruptrix Paraburkholderia fungorum 891 0 species 134537 1 1 species 948107 0 1164 Paraburkholderia sprentiae 1 2615204 no rank 0 784 0 Paraburkholderia sp. SOS3 784 1 1926494 species 1 148447 species 0 Paraburkholderia phymatum 1112 species 75105 1 1256 Paraburkholderia caribensis 0 Paraburkholderia phytofirmans 944 0 261302 species 1 0 888 1 1827195 genus 888 Burkholderia sp. RPE64 0 species 758793 1 1998 0 Burkholderia 41023 1 41 32008 genus 1 species 41899 0 Burkholderia plantarii 1099 1 337 species 0 Burkholderia glumae 2005 0 20528 19 87882 species group 1 152500 species 0 Burkholderia dolosa 529 1 species 488731 0 458 Burkholderia seminalis species 292 1 3490 Burkholderia cepacia 0 0 Burkholderia metallica 494 1 species 488729 0 3628 Burkholderia cenocepacia 1 species 95486 1 488732 species 0 Burkholderia diffusa 490 765 Burkholderia latens 0 488446 species 1 1 species 1207504 0 Burkholderia pseudomultivorans 774 87883 species 1 1376 Burkholderia multivorans 0 species 1503055 1 Burkholderia territorii 393 0 0 1010 Burkholderia ambifaria 1 species 152480 0 Burkholderia vietnamiensis 819 1 species 60552 Burkholderia stagnalis 564 0 1503054 species 1 [Pseudomonas] mesoacidophila 599 0 species 265293 1 1 60550 species 0 524 Burkholderia pyrrocinia 488447 species 1 631 Burkholderia contaminans 0 1 species 482957 0 968 Burkholderia lata 1061 Burkholderia stabilis 0 species 95485 1 0 Burkholderia ubonensis 1955 1 species 101571 0 2219 Burkholderia gladioli 1 species 28095 no rank 2613784 11 7207 0 1 416344 species 0 505 Burkholderia sp. KJ006 0 Burkholderia sp. PAMC 26561 604 1 species 1795043 species 1678678 1 Burkholderia sp. HB1 742 0 0 629 Burkholderia sp. PAMC 28687 1 1795874 species 758796 species 1 812 Burkholderia sp. RPE67 0 1 species 1740162 0 Burkholderia sp. Bp5365 527 species 1740163 1 Burkholderia sp. Bp7605 735 0 640512 species 1 Burkholderia sp. CCGE1003 690 0 species 1097668 1 Burkholderia sp. YI23 794 0 495 Burkholderia sp. 2002721687 0 1468409 species 1 0 674 Burkholderia sp. CCGE1001 1 640510 species 111527 species group 7 5967 0 0 Burkholderia sp. MSMB0852 589 1 species 1637841 0 Burkholderia oklahomensis 910 1 species 342113 Burkholderia thailandensis 1352 0 57975 species 1 Burkholderia mallei 506 0 13373 species 1 0 Burkholderia sp. MSMB617WGS 469 1 species 1637831 species 28450 1 Burkholderia pseudomallei 1530 0 1 1637837 species 0 Burkholderia sp. MSMB0266 611 0 451 1 genus 2571159 1 species 412963 0 Paraburkholderia rhizoxinica 451 314 0 Ralstonia 11129 1 5 48736 genus 1 species 329 0 2369 Ralstonia pickettii Ralstonia insidiosa 1436 0 species 190721 1 305 species 1 5625 Ralstonia solanacearum 0 0 Ralstonia mannitolilytica 1385 1 105219 species 80841 no rank 2 10781 0 0 566 Burkholderiales bacterium GJ-E10 1 species 1469502 10215 Burkholderiales bacterium YL45 0 species 1834205 1 44 506 family 411 0 Alcaligenaceae 1 52274 Alcaligenes 1919 1 0 30 genus 507 2 1889 Alcaligenes faecalis 0 species 511 1 779 0 1 22952 Bordetella 17 517 genus species 463025 1 Bordetella bronchialis 1694 0 0 1230 Bordetella petrii 1 94624 species 518 species 1 2566 Bordetella bronchiseptica 0 Bordetella pertussis 1123 0 species 520 1 0 Bordetella pseudohinzii 1426 1 species 1331258 1 463024 species 0 Bordetella genomosp. 6 1512 1 species 1416803 0 Bordetella genomosp. 9 1350 Bordetella avium 682 0 species 521 1 species 1416806 1 Bordetella genomosp. 8 1616 0 species 123899 1 Bordetella trematum 1400 0 1 103855 species 0 1603 Bordetella hinzii 0 Bordetella holmesii 620 1 35814 species 1 no rank 2630031 0 1292 1 1697043 species 0 Bordetella sp. H567 1292 1 species 463014 0 Bordetella flabilis 1230 519 species 1 Bordetella parapertussis 1377 0 1 species 463040 0 1452 Bordetella genomosp. 13 genus 290425 3 1 1533 Advenella 0 10 1 species 310575 0 717 Advenella kashmirensis 1 species 302406 0 806 Advenella mimigardefordensis 3 0 1 680 Pusillimonas 2 305976 genus 677 0 2640016 no rank 1 0 Pusillimonas sp. T7-7 677 1 1007105 species genus 29574 3 719 1 Taylorella 0 1 Taylorella asinigenitalis 433 0 species 84590 1 species 29575 1 Taylorella equigenitalis 285 0 2 1100891 genus 2 0 Paenalcaligenes 1 210 208 Paenalcaligenes hominis 0 643674 species 1 19378 1 Achromobacter 604 0 222 genus 6 32002 species 1 4447 Achromobacter denitrificans 0 no rank 2626865 1 1679 0 0 Achromobacter sp. AONIH1 1679 1 1758194 species species 217204 1 Achromobacter insolitus 1797 0 0 Achromobacter spanius 3179 1 species 217203 7672 Achromobacter xylosoxidans 0 species 85698 1 2 genus 90243 0 1 1 409 Oligella 1 90245 species 0 408 Oligella urethralis 448 1 Basilea 2 0 1472344 genus 2 species 1472345 1 446 Basilea psittacipulmonis 0 86 0 Castellaniella 1688 1 2 359336 genus 1602 Castellaniella defragrans 0 species 75697 1 0 39 1 1927 Orrella 2 genus 1921582 1888 Orrella dioscoreae 0 1851544 species 1 877 class 1236 0 1306 1 1652711 Gammaproteobacteria Enterobacterales 798563 1 0 955 order 91347 245 14 family 1903412 0 41 Hafniaceae 1 10644 genus 82982 2 Obesumbacterium 1108 1 0 125 Obesumbacterium proteus 983 0 82983 species 1 511 0 7277 1 Edwardsiella 8 635 genus 0 935 Edwardsiella piscicida 1 species 1263550 0 1883 Edwardsiella tarda 1 species 636 0 1640 2 no rank 2676541 0 Edwardsiella sp. LADL05-105 593 1 1650654 species 1047 Edwardsiella sp. EA181011 0 1578828 species 1 1 species 67780 0 Edwardsiella ictaluri 774 Edwardsiella hoshinae 939 0 93378 species 1 Edwardsiella anguillarum 595 0 species 1821960 1 568 genus 3 Hafnia 2218 1 28 0 no rank 2621980 1 596 0 1 1848580 species 0 Hafnia sp. CBA7124 596 species 569 1 Hafnia alvei 1594 0 1903416 family 3 Budviciaceae 557 1 1 0 Pragia 1 556 0 6 genus 82984 2 0 550 Pragia fontium 1 82985 species 1903411 family 39 Yersiniaceae 1 42836 121 0 Rahnella 1 2605 108 0 34037 genus 4 0 Rahnella aquatilis 830 1 species 34038 no rank 2635087 2 1667 0 1805933 species 1 859 Rouxiella sp. ERMR1:05 0 species 741091 1 808 Rahnella sp. Y9602 0 genus 929812 2 1 1021 Gibbsiella 0 2 929813 species 1 1019 Gibbsiella quercinecans 0 0 48 Rouxiella 1 1565532 genus genus 1745211 2 676 1 Chania 0 19 species 1639108 1 657 Chania multitudinisentens 0 0 1244 28946 1 Serratia 16 genus 613 47917 species 1 2153 Serratia fonticola 0 species 615 1 6959 Serratia marcescens 0 61651 species 1 Serratia ficaria 1351 0 82996 species 1 4307 Serratia plymuthica 0 0 9462 8 2647522 no rank 1 768490 species 0 794 Serratia sp. AS12 1 671990 species 0 Serratia sp. FGI94 1366 0 1337 Serratia sp. SCBI 1 488142 species 1 species 768493 0 Serratia sp. AS13 794 1758196 species 1 Serratia sp. SSNIH1 1439 0 0 1289 Serratia sp. FS14 1 1327989 species 0 1521 Serratia sp. MYb239 1 species 2033438 0 Serratia sp. ATCC 39006 922 1 104623 species 1 614 species 0 1146 Serratia liquefaciens 0 1396 Serratia rubidaea 1 61652 species 1 species 28151 0 928 Serratia proteamaculans genus 629 13 9419 1 Yersinia 0 322 1 species 29483 0 Yersinia aldovae 568 Yersinia intermedia 430 0 631 species 1 0 Yersinia frederiksenii 1822 1 29484 species Yersinia aleksiciae 703 0 263819 species 1 387 0 2653513 no rank 1 387 Yersinia sp. FDAARGOS_228 0 1839800 species 1 1613 0 1649845 species group 3 1 species 632 0 476 Yersinia pestis 0 Yersinia similis 441 1 367190 species 633 species 1 696 Yersinia pseudotuberculosis 0 29485 species 1 506 Yersinia rohdei 0 1 28152 species 0 Yersinia kristensenii 460 535 Yersinia ruckeri 0 29486 species 1 1 630 species 0 2073 Yersinia enterocolitica family 1903414 22 11535 1 Morganellaceae 0 169 1795 1 Morganella 66 0 581 genus 2 species 582 1 1729 Morganella morganii 0 genus 29487 4 Photorhabdus 2233 1 0 21 1 species 29488 0 Photorhabdus luminescens 952 0 Photorhabdus temperata 504 1 574560 species 0 756 Photorhabdus asymbiotica 1 291112 species Xenorhabdus 1 3059 33 0 626 genus 6 Xenorhabdus nematophila 575 0 species 628 1 0 542 Xenorhabdus hominickii 1 351679 species 351671 species 1 Xenorhabdus doucetiae 602 0 1 species 40576 0 Xenorhabdus bovienii 840 Xenorhabdus poinarii 467 0 species 40577 1 2 637 genus 1 0 Arsenophonus 125 1 Arsenophonus symbiont of Lipoptena fortisetosa 124 0 634113 species 1 genus 586 4 Providencia 1 2252 0 15 641 Providencia rettgeri 0 587 species 1 Providencia stuartii 1013 0 588 species 1 1 species 126385 0 Providencia alcalifaciens 583 3 genus 583 0 83 1902 1 Proteus 1 585 species 0 Proteus vulgaris 596 Proteus mirabilis 1223 0 584 species 1 0 1419 2 451511 no rank Plesiomonas 1 1419 32 0 702 genus 2 0 1387 Plesiomonas shigelloides 1 species 703 20 family 1903410 0 64 Pectobacteriaceae 17807 1 122277 genus 6 Pectobacterium 1 6677 261 0 species 29471 1 Pectobacterium atrosepticum 997 0 1 55208 species 0 Pectobacterium wasabiae 736 1 species 1905730 0 Pectobacterium parmentieri 905 0 Pectobacterium carotovorum 2635 1 554 species 2042057 species 1 1143 Pectobacterium polaris 0 6 204037 genus 290 0 Dickeya 7587 1 1 1089444 species 0 2232 Dickeya solani Dickeya dianthicola 1150 0 species 204039 1 0 1484 Dickeya zeae 1 species 204042 1 204038 species 0 Dickeya dadantii 1150 1778540 species 1 1281 Dickeya fangzhongdai 0 2 genus 71655 0 15 1146 1 Brenneria 0 1131 Brenneria goodwinii 1 species 1109412 Sodalis 2333 1 67 0 84565 genus 5 0 79 Sodalis endosymbiont of Henestaris halophilus 1 species 1929246 Sodalis praecaptivus 852 0 1239307 species 1 651 Sodalis glossinidius 0 63612 species 1 1 species 1486991 0 684 Candidatus Sodalis pierantonius Enterobacteriaceae 692898 1 0 2077 family 543 116 Shigella 11508 1 0 750 genus 620 4 species 622 1 3791 Shigella dysenteriae 0 0 Shigella flexneri 2634 1 623 species 1 no rank 2629414 0 4333 1 1813821 species 0 Shigella sp. PAMC 28760 4333 0 2273 18 191675 no rank 84563 clade 18 2273 0 1 1906660 genus 0 61 61 Candidatus Mikella endobia 0 species 1778264 1 0 1 Candidatus Doolittlea 1 110 2 genus 1906657 1778262 species 1 Candidatus Doolittlea endobia 109 0 1 clade 199891 0 79 79 secondary endosymbiont of Trabutina mannipara 0 species 1835721 1 84564 clade 7 782 0 genus 203804 7 1 782 Candidatus Blochmannia 0 4 species 251535 1 Candidatus Blochmannia vafer 130 0 species 101534 1 135 Candidatus Blochmannia pennsylvanicus 0 no rank 711328 2 289 0 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 136 1 1505596 species 1 species 1505597 0 153 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 251542 species 1 Candidatus Blochmannia chromaiodes 137 0 Candidatus Blochmannia floridanus 87 0 203907 species 1 3 146507 clade 0 627 0 182 secondary endosymbiont of Ctenarytaina eucalypti 1 species 1199245 1 568987 genus 0 303 1 species 138072 0 303 Candidatus Hamiltonella defensa 0 142 secondary endosymbiont of Heteropsylla cubana 1 134287 species 1 1906661 genus 0 236 species 1070130 1 236 Candidatus Gullanella endobia 0 Candidatus Hoaglandella 179 1 0 5 genus 1906659 2 174 Candidatus Hoaglandella endobia 0 species 1778263 1 0 199 1 1682492 genus species 1410383 1 Candidatus Tachikawaea gelatinosa 199 0 Pluralibacter 5905 1 0 40 genus 1330546 3 [Enterobacter] lignolyticus 1565 0 1334193 species 1 1 61647 species 0 Pluralibacter gergoviae 4300 150 0 Leclercia 1 3488 4 83654 genus 0 2478 2 no rank 2627398 1920114 species 1 1595 Leclercia sp. LSNIH1 0 Leclercia sp. LSNIH3 883 0 species 1920116 1 83655 species 1 Leclercia adecarboxylata 860 0 Salmonella 1 14330 0 42 genus 590 3 1 54736 species 0 875 Salmonella bongori 1 species 28901 0 13413 Salmonella enterica Lelliottia 39907 1 84 0 1330545 genus 4 37025 Lelliottia nimipressuralis 0 species 69220 1 61646 species 1 1818 Lelliottia amnigena 0 980 Lelliottia jeotgali 0 species 1907578 1 237 0 genus 401618 1 Candidatus Riesia pediculicola 237 0 species 401619 1 0 205 1 genus 409304 0 Candidatus Ishikawaella capsulata 205 1 species 168169 4447 1 Raoultella 0 85 genus 160674 3 54291 species 1 3408 Raoultella ornithinolytica 0 575 species 1 954 Raoultella planticola 0 Kosakonia 1 4347 0 34 genus 1330547 5 species 497725 1 Kosakonia oryzae 852 0 species 1158459 1 1089 Kosakonia sacchari 0 1 208223 species 0 Kosakonia cowanii 1080 0 1292 Kosakonia radicincitans 1 species 283686 genus 579 1 1119 0 0 1119 Kluyvera intermedia 1 61648 species 1 1335483 genus 0 808 1 563 species 0 Shimwellia blattae 808 2086 0 1 39897 Klebsiella 10 570 genus 0 2515 2 2608929 no rank 1905288 species 1 Klebsiella sp. LTGPAF-6F 1029 0 1 1934254 species 0 Klebsiella sp. M5al 1486 1 species 571 0 5575 Klebsiella oxytoca Klebsiella pneumoniae 11374 0 species 573 1 species 2026240 1 Klebsiella quasivariicola 1833 0 0 2495 Klebsiella variicola 1 244366 species Klebsiella aerogenes 9727 0 species 548 1 species 1134687 1 Klebsiella michiganensis 2744 0 0 Klebsiella quasipneumoniae 1548 1 1463165 species 521 0 81381 1 Escherichia 5 561 genus 562 species 1 Escherichia coli 72521 0 species 564 1 Escherichia fergusonii 2334 0 species 208962 1 Escherichia albertii 4668 0 Escherichia marmotae 1337 0 1499973 species 1 1048757 genus 1 127 0 Candidatus Moranella endobia 127 0 1048758 species 1 36866 no rank 5 5614 0 0 Enterobacteriaceae bacterium ENNIH3 1213 1 1920128 species 1 891974 species 0 Plautia stali symbiont 847 species 693444 1 993 Enterobacteriaceae bacterium strain FGI 57 0 0 1239 Enterobacteriaceae bacterium ENNIH1 1 species 2066051 1 1920109 species 0 1322 Enterobacteriaceae bacterium ENNIH2 189 0 1 9879 Cronobacter 8 413496 genus species 535744 1 Cronobacter universalis 794 0 0 898 Cronobacter turicensis 1 species 413502 0 Cronobacter sakazakii 3947 1 28141 species species 413501 1 Cronobacter muytjensii 1044 0 413497 species 1 842 Cronobacter dublinensis 0 species 1163710 1 939 Cronobacter condimenti 0 1226 Cronobacter malonaticus 0 413503 species 1 2 genus 158483 0 22 1 3208 Cedecea 1 species 158822 0 Cedecea neteri 3186 12493 0 425733 1 Enterobacter 22 547 genus no rank 2608935 9 19397 0 species 1868135 1 Enterobacter sp. HK169 3112 0 0 Enterobacter sp. Crenshaw 3140 1 1977566 species 1692238 species 1 1120 Enterobacter sp. FY-07 0 1010 Enterobacter sp. R4-368 0 species 1166130 1 0 3239 Enterobacter sp. E20 1 species 1560339 1 2051905 species 0 Enterobacter sp. CRENT-193 3831 1 species 399742 0 706 Enterobacter sp. 638 1914861 species 1 Enterobacter sp. SA187 1072 0 species 1827481 1 Enterobacter sp. ODB01 2167 0 0 393843 12 354276 species group 3 no rank 2757714 0 13242 0 Enterobacter cloacae complex bacterium 6065 1 species 2027919 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1123 1 2077137 species 0 Enterobacter cloacae complex sp. ECNIH7 6054 1 1915310 species species 299767 1 1337 Enterobacter ludwigii 0 1812935 species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 161444 0 1 550 species 0 185485 Enterobacter cloacae 69218 species 1 Enterobacter cancerogenus 1208 0 Enterobacter asburiae 10958 0 61645 species 1 208224 species 1 Enterobacter kobei 3317 0 0 10364 Enterobacter hormaechei 16852 1 3 species 158836 0 Enterobacter xiangfangensis 3604 1 subspecies 1296536 1812934 subspecies 1 Enterobacter cloacae complex 'Hoffmann cluster III' 2884 0 36408 1 Citrobacter 1773 0 544 genus 14 0 Citrobacter farmeri 916 1 67824 species 1344959 species group 7 25740 0 2817 Citrobacter freundii complex sp. CFNIH4 0 2077148 species 1 1 2077147 species 0 3702 Citrobacter freundii complex sp. CFNIH3 Citrobacter braakii 2258 0 species 57706 1 1 species 546 0 Citrobacter freundii 11343 Citrobacter freundii complex sp. CFNIH9 2628 0 2077149 species 1 1 species 2066049 0 957 Citrobacter freundii complex sp. CFNIH2 Citrobacter werkmanii 2035 0 67827 species 1 Citrobacter rodentium 1201 0 species 67825 1 species 545 1 Citrobacter koseri 1175 0 2 2644389 no rank 0 2868 1 species 1920110 0 1972 Citrobacter sp. CFNIH10 1 species 1702170 0 Citrobacter sp. FDAARGOS_156 896 0 2735 Citrobacter amalonaticus 1 35703 species 28 1903409 family 87 0 Erwiniaceae 1 19912 0 15 Buchnera 1740 1 2 genus 32199 0 1725 Buchnera aphidicola 1 9 species 2289 0 genus 2100764 2 Pantoea calida 1144 0 species 665913 1 Pantoea gaviniae 1145 0 species 665914 1 0 23 Tatumella 670 1 2 genus 82986 0 Tatumella citrea 647 1 53336 species 0 221 Erwinia 1 5008 8 genus 551 species 1922217 1 184 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 0 Erwinia billingiae 1394 1 species 182337 894 Erwinia gerundensis 0 species 1619313 1 0 537 1 2622719 no rank 0 Erwinia sp. Ejp617 537 1 species 215689 1 338565 species 0 Erwinia tasmaniensis 694 518 Erwinia pyrifoliae 0 species 79967 1 Erwinia amylovora 566 0 species 552 1 51228 genus 2 Wigglesworthia 229 1 2 0 1 species 51229 0 Wigglesworthia glossinidia 227 418 0 1 9889 Pantoea 11 53335 genus 1076550 species 1 694 Pantoea rwandensis 0 no rank 2630326 3 3274 0 1479 Pantoea sp. At-9b 0 592316 species 1 1 1484157 species 0 Pantoea sp. PSNIH2 961 1 species 1484158 0 834 Pantoea sp. PSNIH1 66269 species 1 570 Pantoea stewartii 0 1409 0 species group 1654067 1 1 species 549 0 Pantoea agglomerans 1409 0 182 Candidatus Pantoea carbekii 1 species 1235990 1 1891675 species 0 Pantoea alhagi 656 0 Pantoea ananatis 982 1 553 species 1 470934 species 0 1704 Pantoea vagans 715 0 Pseudomonadales 1 152237 129 72274 order family 468 42 20820 1 Moraxellaceae 0 60 2388 1 Moraxella 9 0 475 genus 5 1 species 29433 0 362 Moraxella ovis 0 408 Moraxella catarrhalis 1 species 480 1 386891 species 0 534 Moraxella bovoculi 0 Moraxella osloensis 1075 1 34062 species 28 0 Psychrobacter 2916 1 11 497 genus 1 species 261164 0 308 Psychrobacter alimentarius 330922 species 1 Psychrobacter cryohalolentis 260 0 1 45610 species 0 Psychrobacter urativorans 206 0 1715 6 no rank 196806 1 349106 species 0 Psychrobacter sp. PRwf-1 307 0 Psychrobacter sp. P2G3 255 1 1699622 species 0 315 Psychrobacter sp. P11G5 1 species 1699624 species 571800 1 Psychrobacter sp. G 239 0 1 species 1028416 0 Psychrobacter sp. DAB_AL43B 230 species 1720344 1 Psychrobacter sp. AntiMn-1 369 0 1 334543 species 0 Psychrobacter arcticus 399 genus 469 25 15456 1 Acinetobacter 0 234 5573 0 species group 909768 5 species 470 1 2098 Acinetobacter baumannii 0 Acinetobacter pittii 1616 0 species 48296 1 species 1785128 1 Acinetobacter lactucae 351 0 628 Acinetobacter nosocomialis 0 species 106654 1 1 471 species 0 880 Acinetobacter calcoaceticus 1 487316 species 0 460 Acinetobacter soli species 29430 1 Acinetobacter haemolyticus 684 0 Acinetobacter equi 596 0 species 1324350 1 7 no rank 196816 0 2820 1608473 species 1 424 Acinetobacter sp. NCu2D-2 0 447 Acinetobacter sp. TGL-Y2 0 species 1407071 1 0 Acinetobacter sp. SWBY1 328 1 species 2079596 0 Acinetobacter sp. TTH0-4 371 1 species 1646498 319 Acinetobacter sp. ACNIH2 0 species 1758189 1 0 499 Acinetobacter sp. ACNIH1 1 1636603 species Acinetobacter sp. LoGeW2-3 432 0 1808001 species 1 0 Acinetobacter junii 874 1 species 40215 Acinetobacter johnsonii 485 0 species 40214 1 1 species 202950 0 420 1 strain 62977 0 Acinetobacter sp. ADP1 420 432 Acinetobacter indicus 0 756892 species 1 Acinetobacter larvae 332 0 species 1789224 1 0 Acinetobacter radioresistens 548 1 40216 species species 108981 1 Acinetobacter schindleri 670 0 species 1148157 1 498 Acinetobacter oleivorans 0 1 106648 species 0 830 Acinetobacter bereziniae 86 family 135621 0 864 130702 1 Pseudomonadaceae 3 subfamily 351 0 4016 3 352 genus 45 0 4016 1 Azotobacter 1 species 354 0 1638 Azotobacter vinelandii 2333 Azotobacter chroococcum 0 353 species 1 4743 0 125494 1 Pseudomonas 80 286 genus 0 611 Pseudomonas lurida 1 species 244566 0 Pseudomonas alcaliphila 1290 1 species 101564 2 136846 species group 0 7340 1071 Pseudomonas balearica 0 74829 species 1 0 6269 1 578833 species subgroup 1 316 species 0 6269 Pseudomonas stutzeri 978 Pseudomonas cerasi 0 1583341 species 1 26217 0 no rank 196821 30 0 702 Pseudomonas sp. LG1D9 1 species 2083054 0 Pseudomonas sp. St29 1327 1 1500687 species 1028989 species 1 944 Pseudomonas sp. StFLB209 0 0 Pseudomonas sp. TCU-HL1 950 1 species 1856685 1 species 1283291 0 1231 Pseudomonas sp. URMO17WK12:I11 1 2018067 species 0 796 Pseudomonas sp. FDAARGOS_380 1 1415630 species 0 776 Pseudomonas sp. TKP 0 Pseudomonas sp. CCOS 191 1027 1 species 1649877 1636610 species 1 920 Pseudomonas sp. PONIH3 0 Pseudomonas sp. FGI182 878 0 species 1259844 1 0 Pseudomonas sp. CC6-YY-74 602 1 species 1930532 0 611 Pseudomonas sp. LH1G9 1 species 2083055 species 1931241 1 Pseudomonas sp. S-6-2 928 0 69328 species 1 Pseudomonas sp. VLB120 738 0 Pseudomonas sp. MYb193 687 0 1827300 species 1 1 2083052 species 0 929 Pseudomonas sp. SWI36 1 species 1500686 0 1257 Pseudomonas sp. Os17 1003 Pseudomonas sp. NC02 0 species 2067572 1 704 Pseudomonas sp. SWI6 0 species 2083051 1 1 species 1611770 0 1096 Pseudomonas sp. MRSN12121 0 Pseudomonas sp. ATCC 13867 1417 1 1294143 species 0 Pseudomonas sp. M30-35 388 1 species 1981174 0 896 Pseudomonas sp. JY-Q 1 species 1338689 0 Pseudomonas sp. DR 5-09 654 1 1534110 species 1 1898684 species 0 1241 Pseudomonas sp. LPH1 Pseudomonas sp. SWI44 782 0 2083053 species 1 2069256 species 1 Pseudomonas sp. XWY-1 793 0 0 Pseudomonas sp. HLS-6 702 1 species 2049589 species 1659194 1 Pseudomonas sp. GR 6-02 642 0 1207075 species 1 Pseudomonas sp. UW4 596 0 1 157783 species 0 717 Pseudomonas cremoricolorata 6 136841 species group 0 17298 0 2848 Pseudomonas citronellolis 1 53408 species Pseudomonas alcaligenes 1678 0 species 43263 1 1686 0 1232139 species subgroup 1 1 species 1149133 0 1686 Pseudomonas furukawaii Pseudomonas aeruginosa 5046 0 287 species 1 Pseudomonas mendocina 4536 0 species 300 1 1504 Pseudomonas resinovorans 0 species 53412 1 species 930166 1 1779 Pseudomonas brassicacearum 0 1 1853130 species 0 661 Pseudomonas silesiensis species group 136842 2 6354 0 1 species 296 0 Pseudomonas fragi 1386 1 587753 species 0 4968 Pseudomonas chlororaphis Pseudomonas versuta 649 0 1788301 species 1 1 species 157782 0 1335 Pseudomonas parafulva 0 1431 Pseudomonas knackmussii 1 species 65741 species 237610 1 Pseudomonas psychrotolerans 1223 0 312306 species 1 911 Pseudomonas entomophila 0 species 219572 1 Pseudomonas antarctica 839 0 species 104087 1 1540 Pseudomonas frederiksbergensis 0 1 species 216142 0 1049 Pseudomonas rhizosphaerae 8 136849 species group 0 11757 0 604 Pseudomonas cichorii 1 species 36746 933 Pseudomonas avellanae 0 46257 species 1 1554 Pseudomonas syringae group genomosp. 3 0 251701 species 1 no rank 2775504 1 551 0 Pseudomonas sp. Lz4W 551 0 1206777 species 1 2 251698 species subgroup 0 2262 Pseudomonas savastanoi 1098 0 species 29438 1 species 47877 1 Pseudomonas amygdali 1164 0 5153 0 251695 species subgroup 1 5153 Pseudomonas syringae 0 317 species 1 species 33069 1 Pseudomonas viridiflava 700 0 237609 species 1 Pseudomonas alkylphenolica 785 0 species group 136845 6 18554 0 1 78327 species 0 2035 Pseudomonas mosselii Pseudomonas monteilii 2650 0 76759 species 1 749 Pseudomonas plecoglossicida 0 70775 species 1 47885 species 1 Pseudomonas oryzihabitans 933 0 0 Pseudomonas fulva 1313 1 47880 species species 303 1 10874 Pseudomonas putida 0 1 198620 species 0 1501 Pseudomonas koreensis 9 species group 136843 0 15932 species 76761 1 651 Pseudomonas veronii 0 1071 Pseudomonas azotoformans 0 species 47878 1 75612 species 1 849 Pseudomonas mandelii 0 0 634 Pseudomonas poae 1 200451 species 0 Pseudomonas orientalis 809 1 76758 species 0 Pseudomonas protegens 1357 1 380021 species 47879 species 1 Pseudomonas corrugata 682 0 1 species 200450 0 Pseudomonas trivialis 876 294 species 1 9003 Pseudomonas fluorescens 0 328 1 Oblitimonas 0 7 genus 1849530 2 0 321 Oblitimonas alkaliphila 1 species 1697053 260 0 order 135615 3 260 1 Cardiobacteriaceae 1 0 868 family 3 5 0 Dichelobacter 259 1 2 869 genus 1 species 870 0 Dichelobacter nodosus 254 Legionellales 1 6305 0 9 order 118969 21 15 0 1 5305 Legionellaceae 15 444 family 2 465 genus 1 0 224 1 Tatlockia 223 Tatlockia micdadei 0 451 species 1 Legionella 5066 1 0 7 genus 445 12 1 species 452 0 327 Legionella spiritensis 0 Legionella longbeachae 405 1 species 450 species 28087 1 375 Legionella sainthelensi 0 0 Legionella fallonii 340 1 species 96230 0 418 Legionella hackeliae 1 species 449 0 289 Legionella oakridgensis 1 29423 species 45067 species 1 246 Legionella lansingensis 0 446 species 1 Legionella pneumophila 1709 0 0 305 Legionella waltersii 1 species 66969 Legionella endosymbiont of Polyplax serrata 102 0 species 2005262 1 543 Legionella clemsonensis 0 1867846 species 1 family 118968 5 1 991 Coxiellaceae 0 2 1 no rank 134284 0 158 1 species 1592897 0 Coxiella-like endosymbiont 158 776 genus 3 1 831 Coxiella 1 0 0 104 1 2676648 no rank 104 Coxiella endosymbiont of Amblyomma americanum 0 species 325775 1 0 726 Coxiella burnetii 1 species 777 0 40 Acidiferrobacterales 1 1609 6 order 1692040 5 family 1692041 0 23 Acidiferrobacteraceae 1 1569 1744881 genus 2 Sulfuricaulis 906 1 15 0 891 Sulfuricaulis limicola 0 species 1620215 1 18 0 Sulfurifustis 1 640 2 1692042 genus 0 622 Sulfurifustis variabilis 1 1675686 species Vibrionales 1 27536 0 16 order 135623 43 27520 1 Vibrionaceae 171 0 641 family 42 Aliivibrio 1835 1 55 0 511678 genus 4 40269 species 1 Aliivibrio salmonicida 496 0 0 Aliivibrio fischeri 691 1 species 668 593 Aliivibrio wodanis 0 80852 species 1 749 1 Grimontia 17 0 246861 genus 2 0 732 Grimontia hollisae 1 673 species 657 genus 4 2252 1 Photobacterium 28 0 0 Photobacterium gaetbulicola 782 1 species 1295392 Photobacterium profundum 494 0 species 74109 1 species 38293 1 948 Photobacterium damselae 0 0 615 1 2042066 genus 1 species 1755811 0 Paraphotobacterium marinum 615 30 662 genus 489 0 1 21898 Vibrio 434 Vibrio qinghaiensis 0 2025808 species 1 1534743 species 1 Vibrio hyugaensis 421 0 species 672 1 2092 Vibrio vulnificus 0 species 45658 1 Vibrio scophthalmi 469 0 0 345 Vibrio tasmaniensis 1 species 212663 10 species group 717610 0 8195 1 669 species 0 Vibrio harveyi 761 1 species 691 0 881 Vibrio natriegens 1551 Vibrio alginolyticus 0 species 663 1 species 190895 1 290 Vibrio rotiferianus 0 species 766224 1 399 Vibrio jasicida 0 0 1251 2 species subgroup 2315253 species 50719 1 Vibrio diabolicus 834 0 0 Vibrio antiquarius 417 1 species 150340 species 670 1 1479 Vibrio parahaemolyticus 0 982 Vibrio campbellii 0 680 species 1 species 696485 1 601 Vibrio owensii 0 1 species 666 0 Vibrio cholerae 945 Vibrio anguillarum 763 0 species 55601 1 1 species 553239 0 Vibrio breoganii 507 1 1435069 species 0 626 Vibrio tritonius 674 species 1 Vibrio mimicus 846 0 1 species 52443 0 Vibrio tapetis 535 0 889 2 2614977 no rank species 1116375 1 456 Vibrio sp. EJY3 0 433 Vibrio sp. 2521-89 0 2014742 species 1 1 species 190893 0 1132 Vibrio coralliilyticus 1 species 28173 0 742 Vibrio nigripulchritudo 1 species 687 0 580 Vibrio gazogenes 790 Vibrio fluvialis 0 676 species 1 1891919 species group 1 392 0 0 Vibrio tubiashii 392 1 29498 species species 29494 1 706 Vibrio furnissii 0 2030 0 33811 no rank 2 0 endosymbiont of unidentified scaly snail isolate Monju 1086 1 species 1248727 83406 species 1 gamma proteobacterium HdN1 944 0 0 28 Methylococcales 1 5414 12 order 135618 11 family 403 0 57 Methylococcaceae 1 5386 Methylococcus 1 895 8 0 413 genus 2 1 species 414 0 887 Methylococcus capsulatus 0 9 Methylovulum 532 1 2 genus 762296 0 523 Methylovulum psychrotolerans 1 1704499 species Methylomonas 3381 1 29 0 416 genus 5 Methylomonas denitrificans 819 0 1538553 species 1 0 962 1 no rank 2608980 962 Methylomonas sp. DH-1 0 1727196 species 1 Methylomonas methanica 785 0 species 421 1 0 Methylomonas koyamae 786 1 702114 species 1 39773 genus 0 521 0 Methylomicrobium alcaliphilum 521 1 species 271065 4 1775403 order 1 0 536 1 Nevskiales 532 0 family 2689614 2 0 3 1 532 Steroidobacter 2 genus 469322 1 465721 species 0 Steroidobacter denitrificans 529 3 Sinobacteraceae 0 568386 family 1 0 462 54949 1 Xanthomonadales 53 order 135614 1775411 family 14 9442 1 Rhodanobacteraceae 133 0 genus 323413 2 1187 1 Dokdonella 0 22 Dokdonella koreensis 1165 0 323415 species 1 2 242605 genus 9 0 Luteibacter 742 1 1 242606 species 0 Luteibacter rhizovicinus 733 4 231454 genus 51 0 Dyella 4235 1 1 species 445710 0 1472 Dyella thiooxydans 1 231455 species 0 Dyella japonica 1660 1 species 1379159 0 1052 Dyella jiangningensis 70411 genus 2 1100 1 Frateuria 6 0 0 1094 Frateuria aurantia 1 species 81475 genus 75309 2 Rhodanobacter 1337 1 0 26 1 666685 species 0 Rhodanobacter denitrificans 1311 2233801 genus 1 708 0 1 2021234 species 0 708 Xanthomonadales bacterium D13 556 0 1 45045 Xanthomonadaceae 38 32033 family 68 genus 5 1 5574 Lysobacter 110 0 262324 species 1 Lysobacter gummosus 1206 0 0 Lysobacter antibioticus 1424 1 84531 species 0 1571 Lysobacter capsici 1 435897 species 1263 Lysobacter enzymogenes 0 species 69 1 Xanthomonas 17953 1 0 991 genus 338 17 1 56458 species 0 Xanthomonas sacchari 1290 366650 species 1 Xanthomonas alfalfae 683 0 1 56459 species 0 Xanthomonas vasicola 826 670 Xanthomonas axonopodis 0 species 53413 1 56460 species 1 Xanthomonas vesicatoria 882 0 1 species 29447 0 Xanthomonas albilineans 523 2465 Xanthomonas campestris 0 species 339 1 1 456327 species 0 Xanthomonas euvesicatoria 701 species 347 1 1562 Xanthomonas oryzae 0 3000 0 species group 643453 2 1 species 346 0 Xanthomonas citri 2300 Xanthomonas fuscans 700 0 species 366648 1 1 48664 species 0 Xanthomonas fragariae 438 1 1985254 species 0 485 Xanthomonas phaseoli 1676 Xanthomonas translucens 0 343 species 1 969 Xanthomonas perforans 0 442694 species 1 Xanthomonas hortorum 792 0 species 56454 1 1 16306 Stenotrophomonas 0 352 genus 40323 9 0 2247 Stenotrophomonas acidaminiphila 1 species 128780 no rank 196198 4 4270 0 0 Stenotrophomonas sp. MYb57 1022 1 1827305 species species 1793721 1 Stenotrophomonas sp. KCTC 12332 975 0 1182 Stenotrophomonas sp. WZN-1 0 species 2005046 1 0 1091 Stenotrophomonas sp. LM091 1 1904944 species 1 species 216778 0 Stenotrophomonas rhizophila 1153 0 Stenotrophomonas nitritireducens 1112 1 species 83617 0 7172 1 995085 species group 7172 Stenotrophomonas maltophilia 0 species 40324 1 0 575 1 2370 genus Xylella fastidiosa 575 0 species 2371 1 61 0 1 3381 Pseudoxanthomonas 3 83618 genus 1 species 314722 0 Pseudoxanthomonas suwonensis 2607 0 Pseudoxanthomonas spadix 713 1 415229 species 0 5 700 1 Luteimonas 2 genus 83614 0 695 Luteimonas sp. 100111 1 2006110 species Chromatiales 22659 1 0 348 order 135613 50 3 1676141 family 1 0 1 758 Wenzhouxiangellaceae 0 31 757 1 Wenzhouxiangella 2 genus 1676142 1 species 1579979 0 Wenzhouxiangella marina 726 152 0 Chromatiaceae 1 8384 18 1046 family 1093 0 82569 no rank 1 0 1093 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 1978339 species 24 0 Thiodictyon 1 1567 2 53392 genus 1 species 1166950 0 Candidatus Thiodictyon syntrophicum 1543 genus 13724 2 Thiocystis 1 1170 0 38 0 1132 Thiocystis violascens 1 73141 species Thioflavicoccus 1 770 0 21 genus 156885 2 Thioflavicoccus mobilis 749 0 80679 species 1 3 0 Nitrosococcus 1 864 4 1227 genus 321 Nitrosococcus halophilus 0 species 133539 1 0 Nitrosococcus oceani 237 1 1229 species 1 473531 species 0 Nitrosococcus watsonii 303 2 85076 genus 68 0 Marichromatium 1 1111 0 Marichromatium purpuratum 1043 1 37487 species Allochromatium 1458 1 8 0 85072 genus 2 1 species 1049 0 Allochromatium vinosum 1450 genus 1980513 2 Candidatus Nitrosoglobus 1 199 0 2 197 Candidatus Nitrosoglobus terrae 0 1630141 species 1 2 0 Woeseiaceae 448 1 2 1738654 family 446 0 genus 1738655 1 1 species 1548547 0 446 Woeseia oceani family 72276 18 Ectothiorhodospiraceae 1 9609 0 116 genus 1765964 2 Acidihalobacter 1 502 0 3 1 species 160660 0 Acidihalobacter prosperus 499 2 133193 genus 50 0 1 1287 Alkalilimnicola 1 species 351052 0 Alkalilimnicola ehrlichii 1237 1 4714 Thioalkalivibrio 0 94 genus 106633 6 0 637 Thioalkalivibrio paradoxus 1 108010 species 2621013 no rank 1 690 0 species 396595 1 Thioalkalivibrio sp. K90mix 690 0 0 Thioalkalivibrio nitratireducens 617 1 186931 species 1 1033854 species 0 1742 Thioalkalivibrio sulfidiphilus 1 species 106634 0 Thioalkalivibrio versutus 934 0 4 1087 1 Ectothiorhodospira 2 genus 1051 no rank 2684909 1 1083 0 1 1442136 species 0 Ectothiorhodospira sp. BSL-9 1083 3 1335745 genus 34 0 Spiribacter 1 988 1335757 species 1 653 Spiribacter curvatus 0 1 species 1335746 0 Spiribacter salinus 301 2 85108 genus 7 0 Halorhodospira 915 1 species 1053 1 908 Halorhodospira halophila 0 451214 no rank 2 1317 0 0 16 1 1317 Thiohalobacter 2 genus 1273155 species 585455 1 Thiohalobacter thiocyanaticus 1301 0 9 0 Halothiobacillaceae 1 1053 4 255526 family 33 0 1044 1 Halothiobacillus 3 109262 genus 927 species 1 465 Halothiobacillus neapolitanus 0 no rank 2636392 1 546 0 546 Halothiobacillus sp. LS2 0 1860122 species 1 2 family 449719 0 7 742 1 Granulosicoccaceae 437504 genus 1 735 0 437505 species 1 Granulosicoccus antarcticus 735 0 Immundisolibacterales 1 1082 0 38 order 1934945 4 3 family 1934946 0 66 Immundisolibacteraceae 1 1044 1934947 genus 2 978 1 Immundisolibacter 3 0 975 Immundisolibacter cernigliae 0 1810504 species 1 28 order 135624 0 166 Aeromonadales 37335 1 0 370 1 37169 Aeromonadaceae 27 family 84642 genus 347533 2 1 2445 Zobellella 0 16 0 Zobellella denitrificans 2429 1 species 347534 731 1 Tolumonas 0 5 genus 43947 2 0 Tolumonas auensis 726 1 43948 species 18 genus 642 0 2017 1 30760 Aeromonas 654 species 1 Aeromonas veronii 2969 0 0 8993 8 no rank 257493 0 Aeromonas sp. CU5 1235 1 species 2033033 1260 Aeromonas sp. ASNIH5 0 species 1758179 1 species 2033032 1 Aeromonas sp. CA23 1309 0 Aeromonas sp. ASNIH2 853 0 species 1636607 1 1636608 species 1 910 Aeromonas sp. ASNIH3 0 1 species 1636609 0 1365 Aeromonas sp. ASNIH4 0 Aeromonas sp. ASNIH1 1099 1 species 1636606 species 1920107 1 Aeromonas sp. ASNIH7 962 0 1333 Aeromonas schubertii 0 652 species 1 Aeromonas dhakensis 1476 0 species 196024 1 Aeromonas aquatica 1217 0 558964 species 1 0 Aeromonas media 1073 1 species 651 Aeromonas salmonicida 2579 0 645 species 1 1410 Aeromonas rivipollensis 0 948519 species 1 0 Aeromonas hydrophila 6612 1 species 644 Aeromonas caviae 1081 0 648 species 1 2 225143 genus 0 954 1 1416627 species 0 534 Oceanisphaera profunda 1 species 1903694 0 Oceanisphaera sp. AMac2203 420 Oceanimonas 1909 1 0 21 genus 129577 2 no rank 2636315 1 1888 0 Oceanimonas sp. GK1 1888 0 511062 species 1 0 3246 10 118884 no rank 1 630 Thiolapillus 4 0 1608298 genus 2 Thiolapillus brandeum 626 0 1076588 species 1 genus 1524249 1 489 0 1 1249552 species 0 Pseudohongiella spirulinae 489 3 clade 32036 0 788 Bathymodiolus septemdierum thioautotrophic gill symbiont 285 0 113267 species 1 0 280 Calyptogena okutanii thioautotrophic gill symbiont 1 410330 species 223 0 1541743 genus 1 386487 species 1 Candidatus Ruthia magnifica 223 0 0 360 1 clade 198346 0 Candidatus Baumannia cicadellinicola 360 1 species 186490 genus 349742 1 618 0 0 Sedimenticola thiotaurini 618 1 1543721 species 2 655184 genus 0 361 1 species 1705394 0 Candidatus Thioglobus autotrophicus 165 1 1427364 species 0 Candidatus Thioglobus singularis 196 31 135625 order 10 0 444677 1 Pasteurellales 0 1121 Pasteurellaceae 444667 1 30 family 712 2 genus 155493 0 3 Gallibacterium 997 1 750 species 1 994 Gallibacterium anatis 0 697331 genus 2 Basfia 1172 1 3 0 species 157673 1 [Mannheimia] succiniciproducens 1169 0 724 genus 6 Haemophilus 402045 1 52 0 2609962 no rank 1 13132 0 0 Haemophilus sp. oral taxon 036 13132 1 712310 species 0 Haemophilus pittmaniae 20841 1 249188 species 1 730 species 0 3559 [Haemophilus] ducreyi 1 729 species 0 335466 Haemophilus parainfluenzae 28995 Haemophilus influenzae 0 727 species 1 3 genus 416916 0 22 1 14261 Aggregatibacter 0 12202 Aggregatibacter aphrophilus 1 species 732 species 714 1 Aggregatibacter actinomycetemcomitans 2037 0 0 2126 1 genus 476528 1 species 47735 0 2126 Bibersteinia trehalosi 4 75984 genus 16 0 Mannheimia 1 3605 1 species 75985 0 1274 Mannheimia haemolytica 1 85404 species 0 Mannheimia varigena 1418 2645054 no rank 1 897 0 Mannheimia sp. USDA-ARS-USMARC-1261 897 0 1432056 species 1 genus 2094023 2 Glaesserella 1 1784 0 7 Glaesserella parasuis 1777 0 738 species 1 Actinobacillus 7804 1 29 0 713 genus 5 1 716 species 0 1321 Actinobacillus suis 4474 Actinobacillus pleuropneumoniae 0 715 species 1 1 67854 species 0 Actinobacillus succinogenes 817 1163 Actinobacillus equuli 0 718 species 1 1 7920 Pasteurella 9 0 745 genus 3 1 species 754 0 1544 Pasteurella dagmatis 1 747 species 0 Pasteurella multocida 6367 0 1832 1 214906 genus 1 species 731 0 Histophilus somni 1832 26 1706369 order 54 0 Cellvibrionales 8787 1 Microbulbiferaceae 2156 1 9 0 1706373 family 5 4 genus 48073 0 18 1 2147 Microbulbifer 1 1769779 species 0 727 Microbulbifer aggregans 0 779 Microbulbifer thermotolerans 1 252514 species 0 623 Microbulbifer agarilyticus 1 species 260552 1 1177 Spongiibacteraceae 17 0 1706375 family 5 1 280 Spongiibacter 0 3 genus 630749 2 277 0 2631504 no rank 1 1620392 species 1 Spongiibacter sp. IMCC21906 277 0 352 0 1434050 genus 1 1470434 species 1 352 Zhongshania aliphaticivorans 0 1084558 genus 1 528 0 0 528 Oceanicoccus sagamiensis 1 species 716816 4 1706372 family 36 0 Halieaceae 1 1081 3 1217416 genus 22 0 Halioglobus 1 1045 0 Halioglobus pacificus 405 1 930806 species 618 Halioglobus japonicus 0 930805 species 1 11 family 1706371 0 17 Cellvibrionaceae 1 4319 10 genus 4 Cellvibrio 2092 1 4 0 597 Cellvibrio japonicus 0 155077 species 1 2 2624793 no rank 0 1491 0 Cellvibrio sp. PSBB023 522 1 species 1945512 1 species 1987723 0 Cellvibrio sp. PSBB006 969 316625 genus 1 490 0 1 86304 species 0 490 Saccharophagus degradans 2 genus 447467 0 7 Simiduia 707 1 species 447471 1 700 Simiduia agarivorans 0 2036021 genus 1 552 0 0 552 Agarilytica rhodophyticola 1 1737490 species 2 2425 genus 2 0 461 1 Teredinibacter 0 Teredinibacter turnerae 459 1 2426 species 0 2 Orbales 1430 1 6 order 1240482 162 0 Orbaceae 1428 1 5 1240483 family Frischella 596 1 4 0 1335631 genus 2 Frischella perrara 592 0 species 1267021 1 1 670 Gilliamella 10 0 1193503 genus 2 660 Gilliamella apicola 0 1196095 species 1 9651 1 Thiotrichales 0 10 order 72273 32 15 34064 family 6 0 5709 1 Francisellaceae 54 0 5409 1 Francisella 12 262 genus 1 species 573569 0 309 Francisella sp. TX077308 no rank 2610885 2 801 0 0 Francisella sp. FSC1006 453 1 species 1547445 475375 species 1 348 Francisella sp. MA067296 0 1080 Francisella tularensis 0 263 species 1 0 Francisella sp. TX077310 366 1 573570 species 0 Francisella hispaniensis 304 1 622488 species species 1542390 1 377 Francisella sp. CA97-1460 0 292 Francisella persica 0 species 954 1 0 Francisella halioticida 288 1 species 549298 560 Francisella noatunensis 0 657445 species 1 978 Francisella philomiragia 0 species 28110 1 0 1 294 1 Allofrancisella 2 genus 1869285 1 species 594679 0 Allofrancisella guangzhouensis 293 family 135616 11 1 3126 Piscirickettsiaceae 0 33 2 genus 40222 0 923 754477 species 1 Methylophaga frappieri 380 0 754476 species 1 Methylophaga nitratireducenticrescens 543 0 genus 1237 1 470 0 1238 species 1 Piscirickettsia salmonis 470 0 0 503 2 genus 933 0 Thiomicrospira aerophila 238 1 92245 species species 147268 1 Thiomicrospira cyclica 265 0 832 1 Cycloclasticus 0 3 genus 34067 4 no rank 2621467 2 558 0 0 275 Cycloclasticus sp. P1 1 species 385025 species 728003 1 Cycloclasticus sp. PY97N 283 0 Cycloclasticus zancles 271 0 species 1329899 1 1 genus 28884 0 365 0 Hydrogenovibrio crunogenus 365 1 39765 species 806 1 Thiotrichaceae 2 0 135617 family 5 4 0 387 1 Beggiatoa 2 1021 genus 288004 species 1 Beggiatoa leptomitoformis 383 0 2 40751 genus 3 0 Thioploca 1 417 1 40754 species 0 414 Thioploca ingrica 412 0 Oceanospirillales 1 30686 66 135619 order 0 311 1 17762 Halomonadaceae 30 family 28256 2 204286 genus 9 0 Cobetia 1 1230 1221 Cobetia marina 0 28258 species 1 genus 42054 2 1 675 Chromohalobacter 0 7 1 species 158080 0 Chromohalobacter salexigens 668 1 2061 Kushneria 0 37 genus 504090 3 Kushneria konosiri 897 0 species 698828 1 0 1127 Kushneria marisflavi 1 species 157779 154 0 114403 no rank 3 114185 genus 1 25 0 species 114186 1 25 Candidatus Carsonella ruddii 0 0 58 1 genus 235572 Candidatus Portiera aleyrodidarum 58 0 species 91844 1 0 71 1 genus 1495768 species 1495769 1 71 Candidatus Evansia muelleri 0 2 376488 genus 25 0 Halotalea 1 759 0 734 Halotalea alkalilenta 1 species 376489 15 genus 2745 0 221 11578 1 Halomonas 0 Halomonas chromatireducens 999 1 species 507626 0 Halomonas aestuarii 1245 1 1897729 species species 213554 1 316 Halomonas campaniensis 0 0 Halomonas hydrothermalis 804 1 115561 species 1 species 1178482 0 870 Halomonas huangheensis 475662 species 1 Halomonas beimenensis 1499 0 8 2609666 no rank 0 5624 1 1949203 species 0 479 Halomonas sp. 'Soap Lake #6' 2136172 species 1 Halomonas sp. SF2003 1145 0 650 Halomonas sp. KO116 0 1504981 species 1 1 1610576 species 0 651 Halomonas sp. R57-5 0 Halomonas sp. GT 469 1 species 1971364 species 1883416 1 1401 Halomonas sp. 1513 0 479 Halomonas sp. 'Soap Lake #7' 0 species 1962264 1 0 Halomonas sp. GFAJ-1 350 1 1118153 species 17 0 Salinicola 994 1 2 404432 genus 1 species 1771309 0 977 Salinicola tamaricis 135620 family 11 1 4117 Oceanospirillaceae 41 0 4 28253 genus 10 0 1 1455 Marinomonas Marinomonas posidonica 467 0 936476 species 1 1 no rank 196814 0 670 670 Marinomonas sp. MWYL1 0 species 400668 1 1 species 119864 0 Marinomonas mediterranea 308 2 genus 187492 0 2 Thalassolituus 1 520 Thalassolituus oleivorans 518 0 species 187493 1 1 188907 genus 0 469 1 188908 species 0 Oleispira antarctica 469 48075 genus 2 Marinobacterium 1 1078 3 0 0 1075 Marinobacterium aestuarii 1 species 1821621 1 1537406 genus 0 554 Bacterioplanes sanyensis 554 0 1249553 species 1 191033 family 3 515 1 Oleiphilaceae 14 0 1 0 Oleiphilus 1 501 2 141450 genus 141451 species 1 500 Oleiphilus messinensis 0 0 13 Saccharospirillaceae 1 1032 4 family 255527 genus 1445504 2 Gynuella 1 652 0 25 627 Gynuella sunshinyii 0 species 1445505 1 1 genus 230494 0 367 0 Reinekea forsetii 367 1 1336806 species 6 1920240 family 14 0 Kangiellaceae 1288 1 10 0 1 1274 Kangiella 5 261963 genus 1561924 species 1 350 Kangiella profundi 0 261964 species 1 279 Kangiella koreensis 0 914150 species 1 Kangiella geojedonensis 241 0 394 Kangiella sediminilitoris 0 1144748 species 1 784 1 Hahellaceae 0 4 family 224379 3 Hahella 1 780 0 13 genus 158481 2 1 species 158327 0 767 Hahella chejuensis family 224372 8 Alcanivoracaceae 4776 1 0 52 1 genus 2025617 0 531 1 1917421 species 0 531 Ketobacter alkanivorans genus 59753 6 Alcanivorax 1 4193 0 52 0 1454 Alcanivorax pacificus 1 species 1306787 0 Alcanivorax xenomutans 973 1 1094342 species 285091 species 1 979 Alcanivorax dieselolei 0 365 Alcanivorax borkumensis 0 species 59754 1 370 0 no rank 2638842 1 species 1113728 1 Alcanivorax sp. NBRC 101098 370 0 105 order 135622 0 117 42413 1 Alteromonadales family 267889 9 Colwelliaceae 1 3774 0 11 6 genus 28228 0 12 Colwellia 1 3341 3 196834 no rank 0 1998 1816218 species 1 Colwellia sp. PAMC 20917 579 0 0 Colwellia sp. PAMC 21821 582 1 1816219 species Colwellia sp. MT41 837 0 species 58049 1 1967665 species 1 598 Colwellia beringensis 0 28229 species 1 Colwellia psychrerythraea 733 0 2 genus 1518149 0 6 422 1 Thalassotalea Thalassotalea crassostreae 416 0 1763536 species 1 25 family 267890 0 48 Shewanellaceae 1 10421 24 genus 22 0 135 1 10373 Shewanella 60217 species 1 391 Shewanella violacea 0 0 301 Shewanella denitrificans 1 species 192073 0 Shewanella pealeana 338 1 70864 species 0 305 Shewanella oneidensis 1 species 70863 species 404011 1 371 Shewanella piezotolerans 0 0 Shewanella sediminis 435 1 271097 species 0 396 Shewanella frigidimarina 1 56812 species 1 species 60478 0 710 Shewanella amazonensis 62322 species 1 1036 Shewanella baltica 0 260364 species 1 Shewanella marisflavi 553 0 1 species 24 0 Shewanella putrefaciens 455 0 333 Shewanella bicestrii 1 2018305 species species 93973 1 404 Shewanella japonica 0 no rank 196818 6 2122 0 species 60480 1 266 Shewanella sp. MR-4 0 351745 species 1 Shewanella sp. W3-18-1 296 0 Shewanella sp. Pdp11 320 0 2059264 species 1 94122 species 1 448 Shewanella sp. ANA-3 0 0 Shewanella sp. MR-7 487 1 species 60481 0 Shewanella sp. WE21 305 1 2029986 species Shewanella halifaxensis 491 0 species 271098 1 1 species 225848 0 425 Shewanella psychrophila 0 Shewanella loihica 778 1 359303 species 1 species 60961 0 Shewanella woodyi 394 25 267888 family 20 0 Pseudoalteromonadaceae 1 9245 1 9225 Pseudoalteromonas 275 0 53246 genus 24 0 Pseudoalteromonas rubra 367 1 species 43658 1 species 298657 0 827 Pseudoalteromonas spongiae species 28107 1 235 Pseudoalteromonas espejiana 0 1 species 314281 0 Pseudoalteromonas tunicata 446 43657 species 1 Pseudoalteromonas luteoviolacea 335 0 0 Pseudoalteromonas nigrifaciens 317 1 species 28109 0 Pseudoalteromonas arctica 308 1 394751 species species 228 1 Pseudoalteromonas haloplanktis 261 0 538 Pseudoalteromonas piscicida 0 43662 species 1 319 Pseudoalteromonas agarivorans 0 176102 species 1 0 Pseudoalteromonas issachenkonii 263 1 152297 species 1796 0 194690 no rank 5 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 285 1 species 1720343 0 Pseudoalteromonas sp. NC201 467 1 1514074 species species 1761891 1 Pseudoalteromonas sp. 13-15 367 0 species 234831 1 Pseudoalteromonas sp. SM9913 286 0 0 Pseudoalteromonas sp. Bsw20308 391 1 283699 species 0 675 Pseudoalteromonas atlantica 1 288 species 0 Pseudoalteromonas aliena 431 1 247523 species 161398 species 1 Pseudoalteromonas phenolica 291 0 Pseudoalteromonas marina 377 0 species 267375 1 0 558 Pseudoalteromonas piratica 1 species 1348114 1 43659 species 0 345 Pseudoalteromonas tetraodonis species 166935 1 261 Pseudoalteromonas translucida 0 3 family 267892 0 8 Ferrimonadaceae 1125 1 2 44011 genus 6 0 Ferrimonas 1117 1 0 Ferrimonas balearica 1111 1 44012 species 6 family 267893 0 5 1289 1 Idiomarinaceae 135575 genus 5 1284 1 Idiomarina 14 0 332 Idiomarina piscisalsi 0 species 1096243 1 0 Idiomarina loihiensis 333 1 species 135577 605 0 2614829 no rank 2 287 Idiomarina sp. OT37-5b 0 2100422 species 1 2055892 species 1 Idiomarina sp. X4 318 0 92 0 1 14740 Alteromonadaceae 29 72275 family 1751872 genus 2 1136 1 Lacimicrobium 17 0 0 Lacimicrobium alkaliphilum 1119 1 1526571 species 89404 genus 2 767 0 438 0 2618684 no rank 1 1 983545 species 0 438 Glaciecola sp. 4H-3-7+YE-5 Glaciecola nitratireducens 329 0 300231 species 1 0 10 1 504 Agarivorans 2 genus 261825 species 680279 1 Agarivorans gilvus 494 0 Alteromonas 1 4444 0 24 genus 226 10 0 1008 Alteromonas macleodii 1 28108 species 0 478 Alteromonas stellipolaris 1 233316 species 287094 species 1 Alteromonas addita 388 0 314275 species 1 832 Alteromonas mediterranea 0 715451 species 1 307 Alteromonas naphthalenivorans 0 999 0 2614992 no rank 3 0 Alteromonas sp. RW2A1 293 1 species 1917158 333 Alteromonas sp. MB-3u-76 0 species 2058133 1 1 1777491 species 0 Alteromonas sp. Mac1 373 408 Alteromonas australica 0 589873 species 1 Marinobacter 1 7425 0 88 genus 2742 10 Marinobacter salarius 861 0 1420917 species 1 Marinobacter hydrocarbonoclasticus 1351 0 species 2743 1 0 Marinobacter psychrophilus 427 1 330734 species 1 1420916 species 0 895 Marinobacter similis 0 2387 3 83889 no rank 0 358 Marinobacter sp. BSs20148 1 490759 species 0 809 Marinobacter sp. CP1 1 1671721 species species 1749259 1 1220 Marinobacter sp. LQ44 0 1 species 1033846 0 Marinobacter adhaerens 764 0 Marinobacter salinus 652 1 species 1874317 2 0 1 372 Paraglaciecola 2 1621534 genus 370 Paraglaciecola psychrophila 0 326544 species 1 267891 family 3 Moritellaceae 571 1 10 0 58050 genus 2 1 561 Moritella 6 0 1 species 80854 0 Moritella viscosa 555 4 family 267894 0 2 1 1131 Psychromonadaceae 3 genus 67572 0 8 Psychromonas 1 1129 no rank 2614957 1 477 0 0 Psychromonas sp. CNPT3 477 1 314282 species 644 Psychromonas ingrahamii 0 species 357794 1 Alphaproteobacteria 350797 1 0 1120 class 28211 551 5 order 2800060 0 1336 0 24 Hyphomonadaceae 1 1336 5 family 69657 1 2723 genus 0 404 404 Hirschia baltica 0 species 2724 1 85 genus 3 Hyphomonas 908 1 1 0 576 Hyphomonas neptunium 0 81032 species 1 331 0 no rank 2630699 1 1 1906738 species 0 Hyphomonas sp. Mor2 331 208 order 356 0 1605 149398 1 Rhizobiales family 119045 15 1 18126 Methylobacteriaceae 0 148 17 0 1 1561 Microvirga 2 186650 genus Microvirga ossetica 1544 0 species 1882682 1 514 0 Methylobacterium 1 9906 9 407 genus 1 334852 species 0 956 Methylobacterium oryzae 418223 species 1 1025 Methylobacterium phyllosphaerae 0 0 1430 Methylobacterium radiotolerans 1 31998 species 0 Methylobacterium aquaticum 1452 1 species 270351 no rank 2615210 3 3439 0 0 1153 Methylobacterium sp. C1 1 1479019 species 1 species 426117 0 Methylobacterium sp. 4-46 1167 0 Methylobacterium sp. AMS5 1119 1 925818 species 1090 Methylobacterium nodulans 0 species 114616 1 0 6511 3 genus 2282523 3594 Methylobacterium extorquens 0 species 408 1 1892 Methylobacterium populi 0 223967 species 1 1 species 29429 0 1025 Methylobacterium zatmanii 0 62 Brucellaceae 1 5274 20 family 118882 1955 1 Brucella 0 834 genus 234 14 0 Brucella microti 26 1 444163 species 36855 species 1 88 Brucella canis 0 0 97 Brucella pinnipedialis 1 120576 species Brucella vulpis 85 0 981386 species 1 species 29459 1 Brucella melitensis 71 0 113 Brucella ceti 0 120577 species 1 species 29461 1 Brucella suis 64 0 236 species 1 30 Brucella ovis 0 512 0 no rank 2632610 4 1891098 species 1 Brucella sp. 2002734562 8 0 1 1149952 species 0 198 Brucella sp. 09RB8471 0 Brucella sp. 09RB8910 123 1 species 1844051 1 species 1885919 0 183 Brucella sp. 141012304 235 species 1 Brucella abortus 35 0 3257 1 Ochrobactrum 0 30 genus 528 5 1 419475 species 0 845 Ochrobactrum pseudogrignonense 1 529 species 0 Ochrobactrum anthropi 781 0 821 Ochrobactrum sp. A44 1 species 271865 0 Ochrobactrum pituitosum 780 1 species 571256 2036754 family 4 1 2210 Chelatococcaceae 18 0 2192 1 Chelatococcus 56 0 28209 genus 3 1 2638111 no rank 0 1192 species 1702325 1 Chelatococcus sp. CO-6 1192 0 944 Chelatococcus daeguensis 0 444444 species 1 family 45401 18 Hyphomicrobiaceae 9920 1 0 44 3 0 Rhodomicrobium 671 1 2 1068 genus species 1069 1 668 Rhodomicrobium vannielii 0 Devosia 1 3350 0 106 genus 46913 4 no rank 196773 3 3244 0 0 1153 Devosia sp. H5989 1 species 1643450 0 1415 Devosia sp. A16 1 1736675 species 676 Devosia sp. I507 0 species 2083786 1 26 0 Blastochloris 1004 1 2 59282 genus 1079 species 1 978 Blastochloris viridis 0 Pelagibacterium 631 1 10 0 1082930 genus 2 0 Pelagibacterium halotolerans 621 1 531813 species 0 377 1 119044 genus 1 1608628 species 0 Candidatus Filomicrobium marinum 377 0 42 2646 1 Hyphomicrobium 4 genus 81 0 716 Hyphomicrobium denitrificans 1 53399 species 0 807 1 no rank 2619925 Hyphomicrobium sp. MC1 807 0 species 717785 1 1 1427356 species 0 1081 Hyphomicrobium nitrativorans 0 79 Rhodoplanes 1 1197 2 genus 29407 1118 0 no rank 2619116 1 1 species 674703 0 Rhodoplanes sp. Z2-YC6860 1118 no rank 119042 6 2493 0 genus 1734920 2 919 1 Pseudorhodoplanes 0 35 species 1235591 1 Pseudorhodoplanes sinuspersici 884 0 1 669 Methyloceanibacter 0 17 genus 1484898 2 1384459 species 1 Methyloceanibacter caenitepidi 652 0 2 genus 1572860 0 10 905 1 Hartmannibacter 1 species 1482074 0 Hartmannibacter diazotrophicus 895 0 335 Bradyrhizobiaceae 1 30095 26 family 41294 genus 1649510 2 435 1 Variibacter 0 26 0 Variibacter gotjawalensis 409 1 1333996 species 1073 genus 2 Rhodopseudomonas 6242 1 125 0 1 species 1076 0 6117 Rhodopseudomonas palustris genus 374 11 Bradyrhizobium 16837 1 0 402 1 375 species 0 2543 Bradyrhizobium japonicum species 1274631 1 Bradyrhizobium icense 956 0 1 species 1355477 0 Bradyrhizobium diazoefficiens 2780 6 no rank 2631580 0 8663 1 species 1223566 0 Bradyrhizobium sp. CCGE-LA001 1546 115808 species 1 Bradyrhizobium sp. ORS 285 1137 0 1 species 376 0 1696 Bradyrhizobium sp. 0 Bradyrhizobium sp. BTAi1 1396 1 288000 species 0 Bradyrhizobium sp. ORS 278 1408 1 114615 species 0 Bradyrhizobium sp. SK17 1480 1 2057741 species Bradyrhizobium oligotrophicum 1493 0 species 44255 1 0 2 1 893 Nitrobacter 3 genus 911 0 Nitrobacter hamburgensis 521 1 912 species 1 species 913 0 Nitrobacter winogradskyi 370 5 85413 genus 48 0 Bosea 4760 1 3 no rank 2653178 0 3478 1290 Bosea sp. RAC05 0 1842539 species 1 2015316 species 1 Bosea sp. AS-1 1164 0 1024 Bosea sp. PAMC 26642 0 1792307 species 1 1 species 1526658 0 Bosea vaviloviae 1234 40136 genus 2 1 593 Oligotropha 19 0 574 Oligotropha carboxidovorans 0 species 40137 1 119043 family 2 474 0 474 1 Parvibaculum 0 24 genus 256616 2 species 256618 1 450 Parvibaculum lavamentivorans 0 Beijerinckiaceae 1 1054 1 0 45404 family 5 120652 genus 2 1 691 Methylocella 1 0 1 199596 species 0 690 Methylocella silvestris 2 532 genus 1 0 1 362 Beijerinckia Beijerinckia indica 361 0 533 species 1 0 561 Rhizobiaceae 47685 1 53 family 82115 719 1 Liberibacter 11 0 34019 genus 6 1 34020 species 0 Candidatus Liberibacter africanus 212 Candidatus Liberibacter asiaticus 82 0 34021 species 1 1 species 556287 0 Candidatus Liberibacter solanacearum 120 1273132 species 1 Liberibacter crescens 150 0 309868 species 1 144 Candidatus Liberibacter americanus 0 10 227292 no rank 0 9390 7712 1 Sinorhizobium 0 149 genus 28105 7 0 1017 Sinorhizobium americanum 1 species 194963 382 species 1 1828 Sinorhizobium meliloti 0 2162 0 663276 species group 1 2162 Sinorhizobium fredii 0 380 species 1 2 2613772 no rank 0 1766 1074 Sinorhizobium sp. RAC02 0 species 1842534 1 species 794846 1 692 Sinorhizobium sp. CCBAU 05631 0 0 790 Sinorhizobium medicae 1 species 110321 genus 106591 3 Ensifer 1 1678 0 21 0 Ensifer adhaerens 971 1 106592 species 1 716925 species 0 686 Ensifer sojae 2 323620 genus 11 0 1567 1 Shinella 0 1556 1 no rank 2643062 879274 species 1 Shinella sp. HZN7 1556 0 0 35448 34 227290 no rank 1525371 genus 2 Neorhizobium 1 2019 8 0 Neorhizobium galegae 2011 0 species 399 1 24370 1 Rhizobium 1606 0 379 genus 25 56730 species 1 1242 Rhizobium gallicum 0 968 Rhizobium tropici 0 398 species 1 9849 0 no rank 2613769 19 1 species 1703966 0 Rhizobium sp. N731 193 0 1136 Rhizobium sp. ACO-34A 1 species 1571470 1 1301032 species 0 Rhizobium sp. IE4771 481 1 2048897 species 0 846 Rhizobium sp. NXC24 0 3 Rhizobium sp. N741 1 species 1703967 1 2020311 species 0 Rhizobium sp. Kim5 483 642 Rhizobium sp. NXC14 0 species 1981173 1 Rhizobium sp. N1314 193 0 1703961 species 1 1 species 2028343 0 Rhizobium sp. 10195 903 species 1914541 1 Rhizobium sp. Y9 800 0 893 Rhizobium sp. N324 0 1703969 species 1 Rhizobium sp. N871 1 0 1703968 species 1 1 1869170 species 0 Rhizobium sp. S41 778 0 Rhizobium sp. NT-26 674 1 1125847 species 217 Rhizobium sp. TAL182 0 2020313 species 1 Rhizobium sp. IRBG74 843 0 424182 species 1 0 759 Rhizobium sp. CIAT894 1 species 2020312 Rhizobium sp. N1341 2 0 species 1703962 1 1 species 1703960 0 Rhizobium sp. N113 2 384 species 1 Rhizobium leguminosarum 5618 0 Rhizobium etli 2718 0 29449 species 1 1 396 species 0 Rhizobium phaseoli 2369 Agrobacterium 1 9059 0 214 genus 357 7 0 5007 2 1183400 species group Agrobacterium fabrum 837 0 1176649 species 1 358 species 1 Agrobacterium tumefaciens 4170 0 1 species 373 0 1009 Agrobacterium vitis 2 2632611 no rank 0 1737 Agrobacterium sp. RAC06 636 0 1842536 species 1 0 Agrobacterium sp. H13-3 1101 1 861208 species 1092 Agrobacterium rhizogenes 0 species 359 1 255475 family 7 Aurantimonadaceae 4693 1 33 0 2 414371 genus 6 0 Aureimonas 1175 1 1169 0 2615206 no rank 1 1169 Aureimonas sp. AU20 0 species 1349819 1 0 67 3485 1 Martelella 4 genus 293088 Martelella mediterranea 1210 0 species 293089 1 0 Martelella endophytica 1159 1 species 1486262 1 no rank 2629616 0 1049 0 Martelella sp. AD-3 1049 1 species 686597 31993 family 6 Methylocystaceae 1785 1 2 0 0 21 Methylocystis 938 1 3 genus 133 species 655015 1 474 Methylocystis bryophila 0 0 443 1 2625913 no rank 443 Methylocystis sp. SC2 0 187303 species 1 845 1 Methylosinus 0 46 genus 425 2 1 426 species 0 799 Methylosinus trichosporium Phyllobacteriaceae 1 15053 0 114 family 69277 20 2 28100 genus 5 0 Phyllobacterium 678 1 1867719 species 1 Phyllobacterium zundukense 673 0 Chelativorans 1 674 0 4 genus 449972 2 0 670 1 2643807 no rank 0 670 Chelativorans sp. BNC1 1 266779 species 19 0 Aminobacter 1418 1 2 31988 genus species 83263 1 Aminobacter aminovorans 1399 0 0 361 Mesorhizobium 1 10754 9 genus 68287 1670800 species 1 Mesorhizobium sp. B7 659 0 1 species 536018 0 1331 Mesorhizobium australicum 0 1398 1 325217 no rank 0 Mesorhizobium sp. WSM1497 1398 1 278153 species species 2066070 1 1167 Mesorhizobium japonicum 0 1 species 593909 0 1416 Mesorhizobium opportunistum 0 Mesorhizobium loti 1252 1 381 species 0 1429 Mesorhizobium amorphae 1 species 71433 1 39645 species 0 Mesorhizobium ciceri 1741 2 genus 274591 0 5 Hoeflea 778 1 0 773 1 2614931 no rank 0 773 Hoeflea sp. IMCC20628 1 1620421 species 245876 genus 2 Nitratireductor 637 1 20 0 472175 species 1 617 Nitratireductor basaltis 0 Bartonellaceae 4584 1 0 14 family 772 18 17 genus 773 0 32 4570 1 Bartonella 1 1318743 species 0 207 Bartonella ancashensis 271 Bartonella tribocorum 0 85701 species 1 0 Bartonella apis 967 1 species 1686310 0 Bartonella quintana 247 1 species 803 33045 species 1 300 Bartonella grahamii 0 1 388640 species 0 Bartonella australis 142 Bartonella bacilliformis 183 0 species 774 1 Bartonella clarridgeiae 226 0 56426 species 1 0 Bartonella vinsonii 239 1 33047 species 6 no rank 2645622 0 1527 1 species 1933907 0 Bartonella sp. JB63 227 0 Bartonella sp. Raccoon60 268 1 1933912 species 0 Bartonella sp. WD16.2 227 1 1933904 species 0 261 Bartonella sp. A1379B 1 1933910 species 316 Bartonella sp. 1-1C 0 species 515256 1 1 species 1933906 0 228 Bartonella sp. JB15 0 Bartonella henselae 229 1 38323 species 335928 family 7 Xanthobacteraceae 4347 1 79 0 genus 279 2 Xanthobacter 1415 1 0 25 0 Xanthobacter autotrophicus 1390 1 280 species 0 26 1 1785 Azorhizobium 2 genus 6 1 species 7 0 1759 Azorhizobium caulinodans Starkeya 1068 1 33 0 152053 genus 2 1035 Starkeya novella 0 921 species 1 1 6773 Rickettsiales 13 0 766 order 53 1328881 family 2 127 0 2 genus 411566 0 2 1 127 Candidatus Midichloria 125 Candidatus Midichloria mitochondrii 0 234827 species 1 3 0 Anaplasmataceae 1 3220 23 942 family 4 33993 genus 5 0 404 1 Neorickettsia 0 215 Neorickettsia helminthoeca 1 33994 species 0 78 Neorickettsia sennetsu 1 species 951 Neorickettsia risticii 106 0 species 950 1 1507 0 952 tribe 8 Wolbachia 1507 1 16 0 953 genus 8 0 1491 7 2640676 no rank 0 Wolbachia endosymbiont of Onchocerca ochengi 80 1 100901 species 77551 species 1 86 Wolbachia endosymbiont of Onchocerca volvulus 0 180 Wolbachia endosymbiont of Drosophila melanogaster 0 species 163164 1 Wolbachia endosymbiont of Cimex lectularius 247 0 246273 species 1 species 66084 1 249 Wolbachia sp. wRi 0 0 227 Wolbachia endosymbiont of Brugia malayi 1 species 80849 1 species 77038 0 422 Wolbachia endosymbiont of Drosophila simulans 4 768 genus 2 0 249 1 Anaplasma 0 103 1 species group 106179 0 103 Anaplasma phagocytophilum 1 948 species species 769 1 82 Anaplasma centrale 0 Anaplasma marginale 62 0 770 species 1 943 genus 6 Ehrlichia 1057 1 6 0 0 861 4 species group 106178 1 944 species 0 Ehrlichia canis 192 224 Ehrlichia chaffeensis 0 species 945 1 135 Ehrlichia muris 0 35795 species 1 779 species 1 Ehrlichia ruminantium 310 0 1 106181 no rank 0 190 391036 species 1 Ehrlichia sp. HF 190 0 Rickettsiaceae 3090 1 1 0 775 family 26 192 0 genus 2115980 1 0 192 Candidatus Phycorickettsia trachydisci 1 2115978 species 24 33988 tribe 0 2897 1 genus 69474 0 279 Orientia tsutsugamushi 279 0 784 species 1 0 272 1 2618 Rickettsia 23 genus 780 2 114292 species group 0 430 0 Rickettsia prowazekii 154 1 species 782 0 Rickettsia typhi 276 1 785 species 17 114277 species group 0 1194 1 35792 species 0 Rickettsia parkeri 48 783 species 1 22 Rickettsia rickettsii 0 13 Rickettsia philipii 0 1105106 species 1 150 Rickettsia monacensis 0 109232 species 1 1 species 226665 0 14 Rickettsia heilongjiangensis 1 species 35788 0 Rickettsia africae 44 35794 species 1 9 Rickettsia slovaca 0 0 Rickettsia japonica 18 1 35790 species 40 Rickettsia peacockii 0 species 47589 1 0 Rickettsia massiliae 23 1 species 35791 1 33989 species 0 87 Rickettsia amblyommatis 0 176 Rickettsia akari 1 786 species species 787 1 Rickettsia australis 238 0 1 species 33991 0 20 Rickettsia montanensis Rickettsia rhipicephali 56 0 species 33992 1 Rickettsia felis 217 0 42862 species 1 0 Rickettsia conorii 19 1 781 species 114295 no rank 1 256 0 256 Rickettsia endosymbiont of Bemisia tabaci 0 337479 species 1 0 466 2 species group 1129742 0 265 Rickettsia bellii 1 33990 species 0 Rickettsia canadensis 201 1 788 species 323 0 1699067 no rank 1 Rickettsiales bacterium Ac37b 323 0 species 1528098 1 order 1921002 5 744 0 1 family 1777752 0 186 1 genus 1521255 0 186 0 Candidatus Paracaedibacter acanthamoebae 186 1 species 91604 253 0 2100208 family 2 1 253 Candidatus Nucleicultrix 0 1 genus 1509243 2 0 252 Candidatus Nucleicultrix amoebiphila 1 1509244 species family 44746 2 Holosporaceae 305 1 0 1 no rank 204454 1 304 0 1 species 86106 0 endosymbiont of Acanthamoeba sp. UWC8 304 65 204441 order 590 0 Rhodospirillales 1 54359 33 433 family 257 0 Acetobacteraceae 1 21180 3 genus 441 0 29 1 2044 Gluconobacter 1 species 318683 0 776 Gluconobacter albidus 0 1239 Gluconobacter oxydans 1 442 species 5 genus 1434011 0 118 1 3904 Komagataeibacter 0 681 Komagataeibacter medellinensis 1 species 1177712 1731 Komagataeibacter xylinus 0 28448 species 1 0 629 Komagataeibacter europaeus 1 species 33995 species 265960 1 745 Komagataeibacter nataicola 0 genus 91914 2 443 1 Asaia 0 1 species 91915 1 Asaia bogorensis 442 0 1 153497 genus 0 712 Kozakia baliensis 712 0 species 153496 1 75 0 5325 1 Acetobacter 8 434 genus Acetobacter oryzifermentans 464 0 species 1633874 1 1 species 104102 0 Acetobacter tropicalis 683 0 Acetobacter senegalensis 637 1 446692 species 1 65959 species 0 Acetobacter pomorum 484 1 species 1076596 0 Acetobacter persici 680 705 0 subgenus 151157 1 1 435 species 0 Acetobacter aceti 705 1 438 species 0 1597 Acetobacter pasteurianus 2 genus 364409 0 26 Granulibacter 1 1807 1 364410 species 0 Granulibacter bethesdensis 1781 1 476 Neoasaia 0 10 genus 320496 2 1 species 320497 0 466 Neoasaia chiangmaiensis 3 genus 125216 0 117 1 3148 Roseomonas 1479 0 no rank 2617492 1 1479 Roseomonas sp. FDAARGOS_362 0 species 2018065 1 1 257708 species 0 Roseomonas gilardii 1552 1 1573 Acidiphilium 102 0 522 genus 3 749 Acidiphilium cryptum 0 species 524 1 722 Acidiphilium multivorum 0 62140 species 1 1 1602345 genus 0 581 1 1510841 species 0 581 Parasaccharibacter apium 2 89583 genus 12 0 Gluconacetobacter 1 910 1 33996 species 0 898 Gluconacetobacter diazotrophicus 560 0 32589 1 Rhodospirillaceae 31 41295 family 5 13134 genus 100 0 1 6987 Magnetospirillum 0 3194 2 no rank 2617991 species 1639348 1 Magnetospirillum sp. ME-1 1634 0 0 1560 Magnetospirillum sp. XM-1 1 species 1663591 55518 species 1 2036 Magnetospirillum gryphiswaldense 0 0 1657 Magnetospirillum magneticum 1 species 84159 Candidatus Endolissoclinum 564 1 0 1 genus 1263978 2 1263979 species 1 563 Candidatus Endolissoclinum faulkneri 0 3 genus 168934 0 17 1 1997 Thalassospira 0 Thalassospira xiamenensis 880 1 220697 species 1 species 2048283 0 1100 Thalassospira sp. CSC3H3 0 2 316 1 Haematospirillum 2 genus 1804663 1 1549855 species 0 Haematospirillum jordaniae 314 3 genus 1081 0 57 2623 1 Rhodospirillum 1 species 34018 0 1597 Rhodospirillum centenum species 1085 1 Rhodospirillum rubrum 969 0 2 1543704 genus 27 0 Niveispirillum 1547 1 Niveispirillum cyanobacteriorum 1520 0 species 1612173 1 210 0 12321 1 Azospirillum 5 191 genus 2479 Azospirillum thiophilum 0 species 528244 1 0 Azospirillum lipoferum 4523 1 193 species 0 1271 Azospirillum humicireducens 1 1226968 species Azospirillum brasilense 3838 0 species 192 1 171436 genus 2 1645 1 Tistrella 42 0 0 1603 Tistrella mobilis 1 species 171437 Magnetospira 575 1 0 6 genus 1182780 2 no rank 2685734 1 569 0 1 species 1288970 0 Magnetospira sp. QH-2 569 2670 1 Nitrospirillum 21 0 1543705 genus 2 1 28077 species 0 2649 Nitrospirillum amazonense 14 0 1 784 Pararhodospirillum 2 1612157 genus 0 Pararhodospirillum photometricum 770 1 species 1084 204455 order 90 62917 1 Rhodobacterales 404 0 31989 family 89 62513 1 Rhodobacteraceae 1194 0 0 Loktanella 2 1 genus 245186 3 genus 92944 0 34 1455 1 Ketogulonicigenium 770 Ketogulonicigenium robustum 0 92947 species 1 1 species 92945 0 651 Ketogulonicigenium vulgare 2 genus 227873 0 22 Pannonibacter 1 2080 species 121719 1 2058 Pannonibacter phragmitetus 0 Celeribacter 1 3178 0 13 genus 875170 5 1 1758178 species 0 743 Celeribacter ethanolicus species 1411902 1 Celeribacter manganoxidans 1008 0 0 347 Celeribacter marinus 1 species 1397108 1 1208324 species 0 1067 Celeribacter indicus 188905 genus 1 560 0 no rank 2645469 1 560 0 1 290400 species 0 Jannaschia sp. CCS1 560 2211641 genus 1 840 0 Loktanella vestfoldensis 840 0 species 245188 1 0 16 Marinovum 1 1371 2 genus 367771 0 1355 Marinovum algicola 1 species 42444 genus 302485 5 1 6271 Phaeobacter 0 39 1 species 221822 0 Phaeobacter inhibens 1934 Phaeobacter gallaeciensis 2178 0 species 60890 1 1 1580596 species 0 Phaeobacter piscinae 1601 0 519 Phaeobacter porticola 1 species 1844006 1 1979 Ruegeria 0 6 genus 97050 3 Ruegeria pomeroyi 1324 0 species 89184 1 1 2625375 no rank 0 649 Ruegeria sp. TM1040 649 0 292414 species 1 0 1276 2 no rank 58840 1 species 2033435 0 Rhodobacteraceae bacterium QY30 715 0 561 Rhodobacteraceae bacterium 1 1904441 species 1460 1 Sagittula 1 0 58842 genus 2 2624628 no rank 1 1459 0 1459 Sagittula sp. P11 0 species 2009329 1 0 801 1 genus 1649279 Ruegeria mobilis 801 0 379347 species 1 2 1097466 genus 1 0 Defluviimonas 1183 1 1 1335048 species 0 Defluviimonas alba 1182 1 5679 Rhodobacter 116 0 1060 genus 5 1063 species 1 Rhodobacter sphaeroides 2935 0 1 1061 species 0 Rhodobacter capsulatus 1089 1539 0 no rank 196779 2 species 1850250 1 Rhodobacter sp. LPB0142 668 0 species 2033869 1 871 Rhodobacter sp. CZR27 0 1 1579315 genus 0 292 species 1579316 1 Halocynthiibacter arcticus 292 0 genus 34008 4 Rhodovulum 1 3275 0 45 1743 0 no rank 2631432 2 1564506 species 1 898 Rhodovulum sp. P5 0 1 308754 species 0 845 Rhodovulum sp. MB263 0 1487 Rhodovulum sulfidophilum 1 35806 species 2 360528 genus 22 0 1 1304 Pelagibaca species 1250539 1 Pelagibaca abyssi 1282 0 461 1 Planktomarina 0 1 genus 1284657 2 1284658 species 1 Planktomarina temperata 460 0 1 0 Leisingera 1083 1 2 191028 genus 1082 Leisingera methylohalidivorans 0 species 133924 1 genus 1609958 2 Confluentimicrobium 1 1310 0 2 0 1308 1 2643318 no rank Confluentimicrobium sp. EMB200-NS6 1308 0 species 1609966 1 2913 0 genus 263377 2 0 1458 1 2640570 no rank 1458 Yangia sp. CCB-MM3 0 1792508 species 1 0 1455 Thiobacimonas profunda 1 species 1229727 0 1 Antarctobacter 916 1 2 genus 74032 1 74033 species 0 Antarctobacter heliothermus 915 74030 genus 2 Roseovarius 740 1 1 0 Roseovarius mucosus 739 0 215743 species 1 Roseibacterium 879 1 0 1 genus 159345 2 1 159346 species 0 878 Roseibacterium elongatum 2 299261 genus 2 0 580 1 Tateyamaria 0 578 Tateyamaria omphalii 1 299262 species Sulfitobacter 1975 1 16 0 60136 genus 3 0 951 1 196795 no rank 1 1917485 species 0 Sulfitobacter sp. AM1-D1 951 0 Sulfitobacter pseudonitzschiae 1008 1 species 1402135 0 2 Rhodobaca 780 1 2 genus 119541 1 species 441209 0 778 Rhodobaca barguzinensis 533 0 genus 1759396 1 0 533 1 2622455 no rank 1 1920883 species 0 533 Marivivens sp. JLT3646 0 1 Dinoroseobacter 846 1 2 genus 309512 0 845 Dinoroseobacter shibae 1 215813 species 53945 genus 4 Octadecabacter 1 1070 5 0 1 species 1217908 0 272 Octadecabacter antarcticus 1 species 1458307 0 Octadecabacter temperatus 263 0 530 Octadecabacter arcticus 1 species 53946 0 2 1 1117 Roseobacter 3 genus 2433 species 42443 1 Roseobacter litoralis 450 0 1 species 2434 0 Roseobacter denitrificans 665 265 genus 9 Paracoccus 1 9551 177 0 1 species 1945662 0 Paracoccus contaminans 978 1041 Paracoccus sp. CBA4604 0 species 2065379 1 1297 Paracoccus aminovorans 0 34004 species 1 no rank 246570 1 892 0 892 Paracoccus sp. BM15 0 species 1529068 1 1 34003 species 0 Paracoccus aminophilus 775 0 Paracoccus zhejiangensis 1268 1 1077935 species 147645 species 1 1462 Paracoccus yeei 0 0 Paracoccus denitrificans 1661 1 species 266 2 genus 285107 0 4 Thioclava 562 1 0 Thioclava nitratireducens 558 1 1915078 species 4 genus 478070 0 34 1 2997 Labrenzia Labrenzia aggregata 909 0 species 187304 1 2648686 no rank 2 2054 0 0 1063 Labrenzia sp. CP4 1 1674922 species 2021862 species 1 991 Labrenzia sp. VG12 0 625 0 order 2800059 2 2 2800061 family 0 625 Maricaulis 625 1 4 0 74317 genus 2 1 74318 species 0 Maricaulis maris 621 no rank 82117 8 3485 0 0 529 2 62654 clade 0 4 529 1 Candidatus Puniceispirillum 2 genus 767891 Candidatus Puniceispirillum marinum 525 0 767892 species 1 Polymorphum 1 964 30 0 991903 genus 2 991904 species 1 934 Polymorphum gilvum 0 2 genus 213485 0 6 Micavibrio 731 1 0 725 Micavibrio aeruginosavorus 1 species 349221 1 1261 Phreatobacter 36 0 1632780 genus 2 species 1868589 1 Phreatobacter sp. S-12 1225 0 order 204458 20 Caulobacterales 1 16025 0 117 19 family 76892 0 186 15908 1 Caulobacteraceae 41275 genus 7 1 5541 Brevundimonas 142 0 2713 0 no rank 2622653 3 0 Brevundimonas sp. LM2 853 1 species 1938605 955 Brevundimonas sp. DS20 0 1532555 species 1 1 species 1827469 0 905 Brevundimonas sp. GW460-12-10-14-LB2 74313 species 1 Brevundimonas subvibrioides 990 0 species 41276 1 Brevundimonas vesicularis 778 0 918 Brevundimonas naejangsanensis 0 species 588932 1 0 12 1 1188 Phenylobacterium 2 genus 20 0 Phenylobacterium zucineum 1176 1 284016 species genus 75 6 1 7765 Caulobacter 0 121 0 2585 Caulobacter vibrioides 1 species 155892 1 2648921 no rank 0 1369 0 1369 Caulobacter sp. K31 1 366602 species 1168 Caulobacter segnis 0 88688 species 1 1 species 69666 0 1617 Caulobacter mirabilis 0 Caulobacter henricii 905 1 species 69395 no rank 81440 1 291 0 0 Caulobacteraceae bacterium OTSz_A_272 291 1 1759059 species 76890 genus 2 937 1 Asticcacaulis 16 0 species 78587 1 921 Asticcacaulis excentricus 0 1 51726 Sphingomonadales 0 400 order 204457 82 335929 family 22 Erythrobacteraceae 1 10641 171 0 0 2713 6 no rank 2800788 Porphyrobacter 1 1106 0 37 genus 1111 3 0 1069 2 no rank 2683265 432 Porphyrobacter HT-58-2 0 2023229 species 1 Porphyrobacter sp. LM 6 637 0 1896196 species 1 genus 1041 3 1 1607 Erythrobacter 0 55 0 Porphyrobacter neustonensis 616 1 species 1112 0 Erythrobacter litoralis 936 1 species 39960 2800685 genus 1 484 0 484 Altererythrobacter marensis 0 543877 species 1 0 963 2 genus 2800686 1 species 692370 0 515 Altererythrobacter dongtanensis 1982042 species 1 448 Altererythrobacter mangrovi 0 2 genus 2800681 0 944 502682 species 1 Erythrobacter gangjinensis 537 0 1 1648404 species 0 407 Erythrobacter atlanticus 2 genus 1855416 0 1076 266951 species 1 709 Erythrobacter seohaensis 0 0 367 Erythrobacter flavus 1 192812 species 1295327 genus 3 1 1569 Croceicoccus 55 0 species 1348774 1 Croceicoccus naphthovorans 732 0 1 450378 species 0 Croceicoccus marinus 782 genus 361177 4 Altererythrobacter 1811 1 0 54 1 476157 species 0 295 Altererythrobacter ishigakiensis 780 Altererythrobacter atlanticus 0 species 1267766 1 1 361183 species 0 Altererythrobacter epoxidivorans 682 1 2800682 genus 0 910 1 species 645517 0 Altererythrobacter namhicola 910 446 0 40685 1 Sphingomonadaceae 59 41297 family 2 genus 541 0 4 881 1 Zymomonas 877 Zymomonas mobilis 0 species 542 1 258 0 Sphingobium 1 11329 15 165695 genus no rank 2611147 6 4667 0 1 1843368 species 0 Sphingobium sp. RAC03 765 0 937 Sphingobium sp. YBL2 1 484429 species 627192 species 1 875 Sphingobium sp. SYK-6 0 Sphingobium sp. MI1205 664 0 species 407020 1 Sphingobium sp. TKS 890 0 1315974 species 1 0 Sphingobium sp. EP60837 536 1 1855519 species Sphingobium herbicidovorans 650 0 76947 species 1 0 Sphingobium japonicum 674 1 332056 species 332055 species 1 671 Sphingobium indicum 0 Sphingobium yanoikuyae 1012 0 species 13690 1 1332080 species 1 Sphingobium baderi 649 0 0 Sphingobium chlorophenolicum 891 1 species 46429 1 1673076 species 0 1108 Sphingobium hydrophobicum species 120107 1 Sphingobium cloacae 749 0 1649486 genus 2 1 956 Rhizorhabdus 14 0 942 Rhizorhabdus dicambivorans 0 species 1850238 1 19 0 1 1496 Sphingorhabdus 3 1434046 genus 0 1477 2 no rank 2614947 species 2077182 1 493 Sphingorhabdus sp. YGSMI21 0 Sphingorhabdus sp. M41 984 0 1806885 species 1 0 150 7177 1 Sphingopyxis 10 genus 165697 967 Sphingopyxis granuli 0 species 267128 1 species 33050 1 Sphingopyxis macrogoltabida 1504 0 species 117207 1 Sphingopyxis alaskensis 702 0 0 Sphingopyxis terrae 549 1 species 33052 species 1515612 1 778 Sphingopyxis fribergensis 0 4 2614943 no rank 0 2527 Sphingopyxis sp. LPB0140 286 0 species 1913578 1 1 1866325 species 0 Sphingopyxis sp. MG 747 930 Sphingopyxis sp. QXT-31 0 species 1357916 1 0 564 Sphingopyxis sp. 113P3 1 species 292913 0 61 1 3316 Novosphingobium 5 genus 165696 1 158500 species 0 Novosphingobium resinovorum 725 2644732 no rank 1 817 0 0 Novosphingobium sp. PP1Y 817 1 702113 species 1 205844 species 0 Novosphingobium pentaromativorans 856 1 48935 species 0 857 Novosphingobium aromaticivorans Blastomonas 741 1 0 7 genus 150203 2 734 0 2626550 no rank 1 1842535 species 1 734 Blastomonas sp. RAC04 0 0 467 1 2709685 genus 0 Sphingorhabdus flavimaris 467 1 species 266812 genus 2685927 1 669 0 0 Sphingomonas sp. JJ-A5 669 1 1921510 species 22 0 Citromicrobium 1 777 2 72173 genus 1 2630544 no rank 0 755 Citromicrobium sp. JL477 755 0 1634516 species 1 Sphingomonas 1 12430 0 251 genus 13687 15 species 93064 1 818 Sphingomonas koreensis 0 0 Sphingomonas sanxanigenens 1115 1 397260 species 0 1102 1 2067 Sphingomonas wittichii 2 species 160791 Sphingomonas sp. DC-6 965 0 strain 1283312 1 6 no rank 196159 0 4674 0 819 Sphingomonas sp. LK11 1 species 1390395 species 1030157 1 544 Sphingomonas sp. KC8 0 1 1961362 species 0 1144 Sphingomonas sp. NIC1 0 Sphingomonas sp. LM7 775 1 1938607 species Sphingomonas sp. MM-1 849 0 species 745310 1 1 species 1327635 0 543 Sphingomonas sp. Cra20 species 1549858 1 1049 Sphingomonas taxi 0 1 152682 species 0 Sphingomonas melonis 1133 0 603 Sphingomonas hengshuiensis 1 species 1609977 1 species 1560345 0 720 Sphingomonas panacis 1 213 Parvularculales 0 2 order 255473 2 1 255474 family 0 211 genus 208215 1 211 0 Parvularcula bermudensis 211 0 species 208216 1 Pelagibacterales 1 1484 4 0 54526 order 7 2045213 genus 1 312 0 1 species 1925548 0 Candidatus Fonsibacter ubiquis 312 family 1655514 5 Pelagibacteraceae 1 1168 0 8 0 599 2 no rank 1655516 1 744985 species 0 317 alpha proteobacterium HIMB59 282 alpha proteobacterium HIMB5 0 species 859653 1 0 561 2 genus 198251 no rank 2647897 1 310 0 Candidatus Pelagibacter sp. IMCC9063 310 0 species 1002672 1 1 species 198252 0 251 Candidatus Pelagibacter ubique Magnetococcales 592 1 5 0 1191478 order 3 0 14 587 1 Magnetococcaceae 2 family 1191479 1 162171 genus 0 573 0 Magnetococcus marinus 573 1 1124597 species 1807140 class 6 2063 0 1 2063 Acidithiobacillales 27 0 225057 order 6 225058 family 5 Acidithiobacillaceae 2036 1 28 0 35 0 Acidithiobacillus 2008 1 4 119977 genus 0 Acidithiobacillus caldus 532 1 species 33059 1 160808 species 0 781 Acidithiobacillus ferrivorans species 920 1 660 Acidithiobacillus ferrooxidans 0 class 1553900 10 Oligoflexia 1 3276 0 4 4 2024979 order 1 0 Bacteriovoracales 1 1070 0 461 1 1652132 family genus 1652133 1 461 0 0 Halobacteriovorax marinus 461 1 97084 species 2 family 263369 0 608 1 608 Bacteriovorax 2 0 146784 genus 2 Bacteriovorax stolpii 606 0 species 960 1 213481 order 5 Bdellovibrionales 2202 1 14 0 4 213483 family 11 0 Bdellovibrionaceae 1 2188 3 genus 958 0 4 Bdellovibrio 1 2177 1 453816 species 0 Bdellovibrio exovorus 271 species 959 1 1902 Bdellovibrio bacteriovorus 0 subphylum 68525 197 180367 0 259 0 1 64669 Epsilonproteobacteria 72 29547 class 2670 0 Campylobacterales 1 63356 66 213849 order 0 5480 1 53046 Campylobacteraceae 41 family 72294 5 2321108 no rank 0 4153 3 28196 genus 10 0 2096 1 Arcobacter 1 28199 species 0 Arcobacter nitrofigilis 730 0 Arcobacter butzleri 1356 1 species 28197 1 no rank 2321207 0 1092 1 944547 species 0 1092 Arcobacter sp. L 2321187 genus 1 965 0 1 species 1850254 0 Arcobacter sp. LPB0137 965 29 0 Sulfurospirillum 1 2964 9 57665 genus 0 Sulfurospirillum barnesii 316 1 44674 species 0 Sulfurospirillum deleyianum 232 1 species 65553 66821 species 1 Sulfurospirillum multivorans 389 0 no rank 2618290 3 1251 0 1581011 species 1 463 Sulfurospirillum sp. UCH001 0 410 Sulfurospirillum sp. JPD-1 0 220622 species 1 1986224 species 1 378 Sulfurospirillum sp. SL2-1 0 1 species 366522 0 328 Sulfurospirillum cavolei 419 Sulfurospirillum halorespirans 0 194424 species 1 Campylobacter 1 40449 715 0 194 genus 26 1 species 76517 0 Campylobacter hominis 629 1 species 197 0 Campylobacter jejuni 11727 1 199 species 0 458 Campylobacter concisus 0 1284 4 2593542 no rank 351 Campylobacter sp. RM12175 0 species 1660076 1 0 Campylobacter sp. RM16704 379 1 species 1500960 1660074 species 1 Campylobacter sp. RM8964 304 0 1660073 species 1 250 Campylobacter sp. RM6137 0 267 Campylobacter iguaniorum 0 species 1244531 1 497724 species 1 506 Campylobacter subantarcticus 0 1 species 260714 0 431 Campylobacter insulaenigrae 480 Campylobacter ureolyticus 0 827 species 1 196 species 1 1603 Campylobacter fetus 0 0 Campylobacter peloridis 386 1 488546 species species 198 1 498 Campylobacter hyointestinalis 0 1 75658 species 0 1111 Campylobacter lanienae 200 species 1 Campylobacter curvus 305 0 1 species 195 0 15367 Campylobacter coli 0 836 Campylobacter sputorum 1 206 species Campylobacter lari 1393 0 species 201 1 1 species 1965231 0 699 Campylobacter pinnipediorum 522485 species 1 Campylobacter avium 188 0 1 species 1031542 0 Campylobacter volucris 475 0 Campylobacter helveticus 254 1 28898 species 1 species 824 0 Campylobacter gracilis 450 0 387 Campylobacter cuniculorum 1 374106 species 1530 0 2771471 family 4 Sulfurimonas 1040 1 8 0 202746 genus 3 species 39766 1 523 Sulfurimonas denitrificans 0 0 509 Sulfurimonas autotrophica 1 species 202747 0 490 1 286130 genus 148813 species 1 Sulfuricurvum kujiense 490 0 5 0 Helicobacteraceae 1 4405 15 72293 family 4134 1 Helicobacter 5 0 209 genus 12 306 Helicobacter cinaedi 0 species 213 1 1 217 species 0 Helicobacter mustelae 185 0 Helicobacter acinonychis 111 1 212 species 76936 species 1 Helicobacter typhlonius 256 0 1 1591088 species 0 Helicobacter himalayensis 206 species 214 1 Helicobacter felis 150 0 435 Helicobacter hepaticus 0 32025 species 1 0 177 1 no rank 2593540 species 222136 1 177 Helicobacter sp. MIT 01-6242 0 Helicobacter cetorum 435 0 138563 species 1 species 37372 1 310 Helicobacter bilis 0 1 species 210 0 1558 Helicobacter pylori 0 3 266 1 Wolinella 2 genus 843 species 844 1 Wolinella succinogenes 263 0 1705 0 family 2771472 5 Sulfurovum 907 1 0 3 genus 265570 3 0 Sulfurovum lithotrophicum 419 1 species 206403 1 no rank 2646778 0 485 species 387093 1 Sulfurovum sp. NBC37-1 485 0 genus 269260 2 Nitratifractor 1 798 0 5 0 793 Nitratifractor salsuginis 1 269261 species 1054 1 Nautiliales 1 0 235899 order 5 310 0 2795691 family 1 310 0 genus 269258 1 310 0 2624044 no rank 1 0 310 Nitratiruptor sp. SB155-2 1 387092 species 3 224467 family 1 0 743 1 Nautiliaceae 3 0 742 1 Nautilia 2 191291 genus 1 species 244787 0 739 Nautilia profundicola 28221 class 125 Deltaproteobacteria 1 115698 303 0 213462 order 11 Syntrophobacterales 1 3081 9 0 1 1082 Syntrophobacteraceae 10 0 213465 family 3 29526 genus 2 Syntrophobacter 1072 1 1 0 1 119484 species 0 Syntrophobacter fumaroxidans 1071 family 213468 7 Syntrophaceae 1990 1 0 26 0 14 Syntrophus 867 1 2 genus 43773 0 Syntrophus aciditrophicus 853 1 316277 species 0 1 Desulfomonile 582 1 2 genus 2357 0 581 Desulfomonile tiedjei 1 species 2358 60892 genus 2 515 1 Desulfobacca 2 0 1 species 60893 0 Desulfobacca acetoxidans 513 29 order 38 42437 1 Myxococcales 483 0 7341 0 suborder 80812 8 0 54 Polyangiaceae 6103 1 5 family 49 53 0 1 4804 Sorangium 2 39643 genus 4751 Sorangium cellulosum 0 56 species 1 Chondromyces 1 1245 0 9 genus 50 2 species 52 1 1236 Chondromyces crocatus 0 1 1238 Sandaracinaceae 46 0 1055686 family 3 26 0 1192 1 Sandaracinus 2 1055688 genus 0 1166 Sandaracinus amylolyticus 1 species 927083 3 224462 suborder 0 2206 family 224464 3 Kofleriaceae 2206 1 0 25 36 0 Haliangium 2181 1 2 162027 genus 1 80816 species 0 2145 Haliangium ochraceum 80811 suborder 26 32407 0 1 6206 Anaeromyxobacteraceae 0 65 family 1524215 5 0 174 6141 1 Anaeromyxobacter 4 genus 161492 2913 Anaeromyxobacter dehalogenans 0 161493 species 1 2620896 no rank 2 3054 0 0 1212 Anaeromyxobacter sp. Fw109-5 1 species 404589 447217 species 1 1842 Anaeromyxobacter sp. K 0 9 39 family 179 0 1 9615 Archangiaceae genus 44 2 Melittangium 2298 1 0 26 Melittangium boletus 2272 0 83453 species 1 11 0 Archangium 1 2507 2 47 genus 0 2496 Archangium gephyra 1 species 48 42 genus 2 Cystobacter 2627 1 16 0 43 species 1 2611 Cystobacter fuscus 0 1 2004 Stigmatella 30 0 40 genus 2 0 1974 Stigmatella aurantiaca 1 species 41 42 0 Vulgatibacteraceae 1133 1 3 1524213 family genus 1524214 2 1 1091 Vulgatibacter 0 25 1391653 species 1 1066 Vulgatibacter incomptus 0 15453 1 Myxococcaceae 131 0 31 family 9 5 genus 32 0 463 Myxococcus 10101 1 1 1297742 species 0 Myxococcus hansupus 1882 33 species 1 4107 Myxococcus fulvus 0 1 species 34 0 Myxococcus xanthus 1952 0 Myxococcus stipitatus 1697 1 83455 species 0 77 Corallococcus 5221 1 3 genus 83461 184914 species 1 2838 Corallococcus coralloides 0 0 2306 Myxococcus macrosporus 1 35 species Desulfovibrionales 1 33659 345 0 213115 order 24 Desulfovibrionaceae 1 29816 0 211 family 194924 17 2582840 genus 1 1615 0 Desulfovibrio africanus 1615 0 873 species 1 390 0 genus 41707 1 29546 species 1 390 Lawsonia intracellularis 0 0 1034 1 genus 2794998 0 Desulfovibrio salexigens 1034 1 880 species 9 872 genus 182 0 Desulfovibrio 20709 1 Desulfovibrio desulfuricans 3984 0 876 species 1 0 2674 Desulfovibrio fairfieldensis 1 species 44742 Desulfovibrio magneticus 2026 0 species 184917 1 1 2593640 no rank 0 1162 1162 Desulfovibrio sp. G11 0 631220 species 1 0 482 Candidatus Desulfovibrio trichonymphae 1 1725232 species 0 Desulfovibrio piger 3708 1 species 901 4868 Desulfovibrio vulgaris 0 species 881 1 58180 species 1 Desulfovibrio alaskensis 1623 0 genus 2035811 4 Pseudodesulfovibrio 5857 1 0 62 species 57320 1 968 Pseudodesulfovibrio profundus 0 1716143 species 1 2648 Pseudodesulfovibrio indicus 0 species 182210 1 2179 Pseudodesulfovibrio aespoeensis 0 4 family 213116 0 65 1 2984 Desulfomicrobiaceae 0 11 Desulfomicrobium 2919 1 3 genus 898 1428 Desulfomicrobium orale 0 132132 species 1 899 species 1 1480 Desulfomicrobium baculatum 0 514 0 213117 family 2 514 1 Desulfohalobium 0 5 genus 45662 2 species 45663 1 509 Desulfohalobium retbaense 0 1 23779 Desulfuromonadales 0 263 order 69541 24 Desulfuromonadaceae 1 7598 220 0 213421 family 9 genus 18 5 1 4912 Pelobacter 0 26 0 910 1 2620299 no rank 910 Pelobacter sp. SFB93 0 1842532 species 1 29543 species 1 Pelobacter propionicus 1941 0 29542 species 1 1060 Pelobacter acetylenicus 0 1 species 19 0 975 Pelobacter carbinolicus 2466 1 Desulfuromonas 35 0 890 genus 3 0 1243 Desulfuromonas soudanensis 1 species 1603606 no rank 2614637 1 1188 0 Desulfuromonas sp. DDH964 1188 0 species 1823759 1 126 0 Geobacteraceae 1 15918 14 213422 family 1298 1 Geoalkalibacter 1 0 392332 genus 2 1 483547 species 0 Geoalkalibacter subterraneus 1297 Geobacter 14494 1 0 276 genus 28231 11 Geobacter metallireducens 1101 0 28232 species 1 225194 species 1 Geobacter bemidjiensis 1598 0 0 972 Geobacter uraniireducens 1 351604 species 345632 species 1 Geobacter pickeringii 1605 0 0 3490 2 2627627 no rank 443143 species 1 Geobacter sp. M18 2027 0 0 1463 Geobacter sp. M21 1 species 443144 1 35554 species 0 Geobacter sulfurreducens 1297 1203471 species 1 Geobacter daltonii 1083 0 0 1533 Geobacter anodireducens 1 1340425 species Geobacter lovleyi 1539 0 313985 species 1 order 213118 18 1 9550 Desulfobacterales 0 86 213119 family 9 1 5341 Desulfobacteraceae 52 0 2 genus 2295 0 1 Desulfobacterium 1066 1 2296 species 1 Desulfobacterium autotrophicum 1065 0 Desulfococcus 1 2281 0 16 genus 896 3 1 species 181663 0 Desulfococcus oleovorans 1390 1 species 897 0 875 Desulfococcus multivorans 2 genus 218207 0 1 Desulfatibacillum 1 946 species 259354 1 Desulfatibacillum alkenivorans 945 0 996 0 28222 genus 1 species 28223 1 996 Desulfobacula toluolica 0 8 213121 family 36 0 Desulfobulbaceae 4123 1 1 671 Desulfocapsa 1 0 53318 genus 2 Desulfocapsa sulfexigens 670 0 65555 species 1 2 genus 109168 0 1 557 1 Desulfotalea species 84980 1 556 Desulfotalea psychrophila 0 0 1642 1 893 genus 1986146 species 1 1642 Desulfobulbus sp. ORNL 0 25 0 1 1217 Desulfurivibrio 2 427922 genus 1 427923 species 0 1192 Desulfurivibrio alkaliphilus 0 4 Desulfurellales 1 742 5 order 213113 0 2 738 1 Desulfurellaceae 4 family 117942 84404 genus 1 356 0 species 84405 1 356 Hippea maritima 0 33001 genus 2 Desulfurella 1 380 1 0 0 379 Desulfurella acetivorans 1 species 33002 4 order 453227 0 15 Desulfarculales 1 2147 family 453228 3 1 2132 Desulfarculaceae 0 26 0 41 2106 1 Desulfarculus 2 genus 453229 1 species 453230 0 2065 Desulfarculus baarsii 11 phylum 508458 0 5362 0 18 Synergistia 5362 1 11 class 649775 19 0 1 5344 Synergistales 10 649776 order 5325 1 Synergistaceae 402 0 649777 family 9 0 277 1 genus 336260 Thermovirga lienii 277 0 species 336261 1 49894 genus 2 235 1 Acetomicrobium 2 0 1 species 97477 0 Acetomicrobium mobile 233 0 5 Cloacibacillus 3370 1 2 genus 508459 1 species 1197717 0 3365 Cloacibacillus porcorum 1 81466 genus 0 437 species 81468 1 437 Aminobacterium colombiense 0 2 genus 81461 0 15 Thermanaerovibrio 1 604 species 81462 1 589 Thermanaerovibrio acidaminovorans 0 0 3 Acidobacteria 1 8079 20 phylum 57723 1562566 class 3 1 887 Blastocatellia 10 0 1 877 Chloracidobacterium 9 0 458032 genus 2 868 Chloracidobacterium thermophilum 0 species 458033 1 41 0 1 7189 Acidobacteriia 16 204432 class Solibacterales 1476 1 55 0 332160 order 3 0 21 Solibacteraceae 1421 1 2 family 332161 0 1400 1 genus 332162 species 332163 1 1400 Candidatus Solibacter usitatus 0 0 68 Acidobacteriales 1 5672 12 order 204433 204434 family 11 5604 1 Acidobacteriaceae 57 0 2 0 Terriglobus 1 1991 3 392733 genus Terriglobus saanensis 741 0 870903 species 1 1 392734 species 0 1248 Terriglobus roseus Acidobacterium 1033 1 18 0 33973 genus 2 species 33075 1 1015 Acidobacterium capsulatum 0 2 658061 genus 24 0 790 1 Candidatus Koribacter Candidatus Koribacter versatilis 766 0 658062 species 1 0 24 1 1733 Granulicella 3 genus 940557 835 Granulicella tundricola 0 species 940615 1 Granulicella mallensis 874 0 940614 species 1 368 1783270 clade 0 14329856 clade 68336 353 14324593 0 0 1489 4 phylum 1134404 1489 1 Ignavibacteria 3 0 795747 class 4 3 order 795748 0 1486 1 1334117 family 0 511 0 511 1 genus 1134403 0 Melioribacter roseus 511 1 species 1134405 975 0 795749 family 2 0 3 Ignavibacterium 975 1 2 genus 795750 972 Ignavibacterium album 0 591197 species 1 0 10648 21 phylum 1090 191410 class 21 Chlorobia 10648 1 46 0 20 order 191411 0 69 1 10602 Chlorobiales 101 0 1 10533 Chlorobiaceae 19 191412 family 0 510 1 genus 100715 100716 species 1 Chloroherpeton thalassium 510 0 0 4575 8 no rank 274493 1 2831 Chlorobium 7 0 1091 genus 5 species 337090 1 Chlorobium chlorochromatii 401 0 1 species 1092 0 Chlorobium limicola 823 Chlorobium phaeobacteroides 1066 0 species 1096 1 0 Chlorobium phaeovibrioides 534 1 1094 species genus 1099 3 1 1744 Pelodictyon 0 8 1030 Pelodictyon luteolum 0 species 1100 1 species 34090 1 706 Pelodictyon phaeoclathratiforme 0 4 256319 genus 13 0 Chlorobaculum 1 3392 878 Chlorobaculum tepidum 0 species 1097 1 1 species 274539 0 1280 Chlorobaculum parvum species 274537 1 Chlorobaculum limnaeum 1221 0 7 0 Prosthecochloris 1 1955 5 1101 genus 1102 species 1 638 Prosthecochloris aestuarii 0 1310 0 2632826 no rank 3 0 520 Prosthecochloris sp. GSB1 1 281093 species 0 Prosthecochloris sp. HL-130-GSB 433 1 species 1974213 0 357 Prosthecochloris sp. CIB 2401 1 species 1868325 976 phylum 328 Bacteroidetes 1 14312456 32 0 1853228 class 16 Chitinophagia 12313 1 13 0 Chitinophagales 12300 1 13 0 1853229 order 15 14 563835 family 28 0 1 12287 Chitinophagaceae 0 7 Niabella 2886 1 3 genus 379899 0 1379 Niabella ginsenosidivorans 1 species 1176587 1 446683 species 0 Niabella soli 1500 Filimonas 1 1976 11 0 649460 genus 2 0 1965 Filimonas lacunae 1 species 477680 Niastella 1 1509 1 0 354354 genus 2 Niastella koreensis 1508 0 species 354356 1 957 1 Flavisolibacter 1 0 398041 genus 2 0 956 Flavisolibacter tropicus 1 1492898 species genus 79328 3 1 3803 Chitinophaga 0 4 0 1501 Chitinophagaceae bacterium 13 1 species 2029983 1 79329 species 0 2298 Chitinophaga pinensis 0 1128 1 1769012 genus 1128 0 2636138 no rank 1 1 1850526 species 0 1128 Arachidicoccus sp. BS20 145 117743 class 38 0 184499 1 Flavobacteriia 144 200644 order 114 0 184461 1 Flavobacteriales 996 0 family 1333713 2 genus 267986 2 1 996 Owenweeksia 0 5 991 Owenweeksia hongkongensis 0 species 253245 1 family 2762318 21 87657 0 10179 1 Elizabethkingia 0 44 genus 308865 6 Elizabethkingia miricola 2225 0 172045 species 1 1117645 species 1 Elizabethkingia anophelis 4128 0 238 species 1 1443 Elizabethkingia meningoseptica 0 1 species 1756150 0 Elizabethkingia genomosp. 4 1123 1 species 1756149 0 Elizabethkingia genomosp. 3 1216 641 0 1013 genus 1 641 Weeksella virosa 0 species 1014 1 no rank 2782232 10 18758 0 1 16550 Chryseobacterium 68 0 59732 genus 9 1175 Chryseobacterium glaciei 0 species 1685010 1 0 4050 3 2593645 no rank 878220 species 1 1257 Chryseobacterium sp. StRB126 0 1 species 2015076 0 1445 Chryseobacterium sp. T16E-39 1348 Chryseobacterium sp. IHB B 17019 0 1721091 species 1 species 1265445 1 Chryseobacterium camelliae 1362 0 0 Chryseobacterium piperi 1092 1 558152 species 6001 Chryseobacterium gallinarum 0 1324352 species 1 0 Chryseobacterium indologenes 2802 1 species 253 1 2782228 genus 0 2208 0 2208 Chryseobacterium taklimakanense 1 species 536441 0 2 1 2557 Riemerella 2 genus 34084 Riemerella anatipestifer 2555 0 34085 species 1 2 28250 genus 399 0 Ornithobacterium 1 55522 1 species 28251 0 55123 Ornithobacterium rhinotracheale 2260 0 1 92602 Flavobacteriaceae 102 49546 family 1177 0 1209327 genus 1 0 Flavivirga eckloniae 1177 1 1803846 species genus 237 9 1 9957 Flavobacterium 0 8 Flavobacterium crassostreae 705 0 1763534 species 1 1492737 species 1 Flavobacterium gilvum 1236 0 1 986 species 0 3095 Flavobacterium johnsoniae species 312277 1 Flavobacterium indicum 735 0 species 996 1 Flavobacterium columnare 1507 0 Flavobacterium psychrophilum 726 0 96345 species 1 species 55197 1 Flavobacterium branchiophilum 732 0 1213 Flavobacterium commune 0 species 1306519 1 15 genus 1016 0 65 28086 1 Capnocytophaga 1017 species 1 720 Capnocytophaga gingivalis 0 45243 species 1 1090 Capnocytophaga haemolytica 0 1 species 1848904 0 Capnocytophaga stomatis 1231 1 species 327575 0 7088 Capnocytophaga leadbetteri species 1018 1 1087 Capnocytophaga ochracea 0 6 no rank 2640652 0 12358 0 1194 Capnocytophaga sp. oral taxon 864 1 species 1316593 Capnocytophaga sp. oral taxon 323 1308 0 species 1705617 1 1945658 species 1 Capnocytophaga sp. H4358 968 0 Capnocytophaga sp. ChDC OS43 1115 0 species 209053 1 0 888 Capnocytophaga sp. H2931 1 species 1945657 6885 Capnocytophaga sp. oral taxon 878 0 1316596 species 1 1 species 28188 0 Capnocytophaga canimorsus 1294 0 1784 Capnocytophaga sputigena 1 1019 species species 28189 1 Capnocytophaga cynodegmi 1369 0 1 4850 Polaribacter 0 12 genus 52959 6 196858 no rank 3 2729 0 Polaribacter sp. ALD11 959 0 2058137 species 1 Polaribacter sp. MED152 840 0 species 313598 1 0 930 Polaribacter sp. BM10 1 1529069 species species 1774273 1 Polaribacter vadi 1173 0 species 996801 1 936 Polaribacter reichenbachii 0 393005 genus 1 666 0 species 2069432 1 Tamlana sp. UJ94 666 0 genus 111500 2 1436 0 523 Muricauda lutaonensis 0 species 516051 1 1 species 111501 0 913 Muricauda ruestringensis 0 947 1 261827 genus 1 1736674 species 0 947 Algibacter alginicilyticus 892 0 2700084 genus 1 1 species 1850246 0 892 Lutibacter sp. LPB0138 5 genus 252356 0 7 Maribacter 3482 1 2615042 no rank 3 2620 0 0 Maribacter sp. T28 807 1 1836467 species 1 313603 species 0 823 Maribacter sp. HTCC2170 0 990 Maribacter sp. 1_2014MBL_MicDiv 1 1644130 species 1 1178778 species 0 Maribacter cobaltidurans 855 697 0 genus 1518147 1 0 Wenyingzhuangia fucanilytica 697 1 1790137 species 1176327 genus 1 559 0 0 559 1 2636237 no rank 1 2094025 species 0 Aureitalea sp. RR4-38 559 2 genus 112040 0 1 1074 1 Zobellia 1073 Zobellia galactanivorans 0 species 63186 1 0 1159 1 178469 genus 1 species 616991 0 1159 Arenibacter algicola Zunongwangia 1 1119 0 9 genus 417127 2 0 Zunongwangia profunda 1110 1 398743 species 389486 genus 1 513 0 0 513 1 no rank 2648869 1 1453352 species 0 Sediminicola sp. YIK13 513 2 358023 genus 1 0 1 886 Lutibacter 0 885 Lutibacter profundi 1 species 1622118 0 784 1 1204360 genus species 762954 1 Siansivirga zeaxanthinifaciens 784 0 292691 genus 5 1 3822 Gramella 6 0 411153 species 1 775 Gramella forsetii 0 Gramella sp. SH35 1470 0 2126553 species 1 0 642 Gramella sp. LPB0144 1 1913577 species Gramella flava 929 0 species 1486245 1 4 326319 genus 5 0 Dokdonia 1 1574 1084 0 2615033 no rank 2 0 Dokdonia sp. 4H-3-7-5 523 1 species 983548 0 561 Dokdonia sp. MED134 1 species 313590 326320 species 1 485 Dokdonia donghaensis 0 143222 genus 2 Salegentibacter 849 1 10 0 839 0 no rank 2633436 1 0 839 Salegentibacter sp. T436 1 1729720 species 0 57 Myroides 6606 1 5 genus 76831 Myroides profundi 1220 0 480520 species 1 2 no rank 2642485 0 2140 0 1023 Myroides sp. A21 1 species 1583100 0 Myroides sp. ZB35 1117 1 species 1458492 3189 Myroides odoratimimus 0 species 76832 1 2 genus 225842 0 816 816 0 no rank 2644710 2 310 Formosa sp. Hel3_A1_48 0 species 1336795 1 1 1336794 species 0 Formosa sp. Hel1_33_131 506 Lacinutrix 2159 1 0 2 genus 291183 4 1433 0 2647285 no rank 2 614 Lacinutrix sp. 5H-3-7-4 0 species 983544 1 0 819 Lacinutrix sp. Bg11-31 1 species 2057808 Lacinutrix venerupis 724 0 species 1486034 1 252306 genus 2 1 674 Robiginitalea 3 0 1 species 252307 0 671 Robiginitalea biformata genus 83612 1 614 0 1 57029 species 0 614 Psychroflexus torquis 4 genus 104264 0 11 3075 1 Cellulophaga 0 Cellulophaga algicola 796 1 59600 species 1 species 76594 0 1023 Cellulophaga baltica species 979 1 Cellulophaga lytica 1245 0 5 genus 363408 0 1 Nonlabens 1 2282 319236 species 1 Nonlabens sediminis 490 0 0 1098 2 2615035 no rank 499 Nonlabens sp. MB-3u-79 0 2058134 species 1 1476901 species 1 Nonlabens sp. MIC269 599 0 0 Nonlabens dokdonensis 693 1 species 328515 0 1 1 730 Seonamhaeicola 2 genus 1649495 0 729 1 2622645 no rank 1 species 1936081 0 Seonamhaeicola sp. S2-3 729 0 723 1 genus 153265 1 species 101385 0 Aequorivita sublithincola 723 genus 286104 3 Winogradskyella 1802 1 0 8 2615021 no rank 2 1794 0 species 754409 1 Winogradskyella sp. PG-2 681 0 Winogradskyella sp. J14-2 1113 0 1936080 species 1 0 578 1 genus 336276 578 0 2615019 no rank 1 species 2058135 1 Olleya sp. Bg11-27 578 0 104267 genus 5 Tenacibaculum 3093 1 11 0 1 107401 species 0 Tenacibaculum maritimum 571 0 1020 Tenacibaculum jejuense 1 584609 species 0 Tenacibaculum dicentrarchi 670 1 669041 species species 1850252 1 821 Tenacibaculum todarodis 0 1941 0 61432 no rank 2 1150389 species 1 1124 Flavobacteriaceae bacterium UJ101 0 817 Flavobacteriaceae bacterium 3519-10 0 531844 species 1 1 216431 genus 0 720 313588 species 1 720 Croceibacter atlanticus 0 1 family 1755828 0 304 0 304 1 genus 1755829 242600 species 1 304 Ichthyobacterium seriolicida 0 0 Cryomorphaceae 18 1 family 246874 893 1 Crocinitomicaceae 0 1 family 1853230 3 2 332102 genus 52 0 Fluviicola 1 892 191579 species 1 Fluviicola taffensis 840 0 3 no rank 313602 0 312 95 0 genus 1940138 1 species 1415657 1 Candidatus Walczuchella monophlebidarum 95 0 genus 336809 2 Candidatus Sulcia 1 217 0 1 216 Candidatus Sulcia muelleri 0 species 336810 1 39782 family 10 1565 1 Blattabacteriaceae 2 0 9 genus 34098 0 28 Blattabacterium 1 1563 0 303 Blattabacterium punctulatus 1 164514 species 6 no rank 2647581 0 1000 213 Blattabacterium sp. (Blattella germanica) 0 species 624186 1 1316444 species 1 Blattabacterium sp. (Nauphoeta cinerea) 168 0 0 178 Blattabacterium sp. (Periplaneta americana) 1 species 367488 172 Blattabacterium sp. (Blaberus giganteus) 0 1186051 species 1 39768 species 1 Blattabacterium sp. (Mastotermes darwiniensis) 174 0 species 367806 1 95 Blattabacterium sp. (Blatta orientalis) 0 0 Blattabacterium cuenoti 232 1 1653831 species Bacteroidia 14041311 1 123 0 200643 class 70 2247 0 1 14034320 Bacteroidales 58 171549 order 3 0 Paludibacteraceae 3220 1 3 2005523 family 2 346096 genus 2 0 Paludibacter 1 3217 0 3215 Paludibacter propionicigenes 1 185300 species Barnesiellaceae 103001 1 13 0 2005519 family 3 Barnesiella 1 102988 290 0 397864 genus 2 species 397865 1 Barnesiella viscericola 102698 0 1 185291 no rank 0 1179 Bacteroidales bacterium CF 1179 0 1400053 species 1 0 9516933 5 333046 no rank 909656 genus 3 9515609 0 1 821 species 0 Bacteroides vulgatus 6830546 357276 species 1 Bacteroides dorei 2579774 0 species 376805 1 Bacteroides salanitronis 105289 0 2 511434 genus 2 0 Candidatus Azobacteroides 1 1324 species 511435 1 Candidatus Azobacteroides pseudotrichonymphae 1322 0 2005520 family 5 15897 0 1 307628 genus 0 6715 6715 Petrimonas mucosa 0 species 1642646 1 2 1784836 genus 1 0 Fermentimonas 1 4443 1 species 1562970 0 Fermentimonas caenicola 4442 4739 1 Proteiniphilum 0 2 genus 294702 2 1 species 1642647 0 Proteiniphilum saccharofermentans 4737 171552 family 11 217011 1 Prevotellaceae 22 0 0 592 1 216989 Prevotella 10 genus 838 1177574 species 1 7331 Prevotella jejuni 0 species 28129 1 Prevotella denticola 5127 0 1 28132 species 0 6899 Prevotella melaninogenica 28131 species 1 174374 Prevotella intermedia 0 2638335 no rank 1 2058 0 652716 species 1 2058 Prevotella sp. oral taxon 299 0 species 76123 1 Prevotella enoeca 3781 0 839 species 1 5579 Prevotella ruminicola 0 0 Prevotella dentalis 6944 1 52227 species 589436 species 1 Prevotella fusca 4304 0 Porphyromonadaceae 1 10544 13 0 171551 family 4 8 0 1 10531 Porphyromonas 3 836 genus 837 species 1 8015 Porphyromonas gingivalis 0 1 species 28123 0 2508 Porphyromonas asaccharolytica Bacteroidaceae 3057903 1 44 0 815 family 11 0 59547 Bacteroides 1 3057859 10 genus 816 0 Bacteroides caccae 258933 1 species 47678 1 species 246787 0 257875 Bacteroides cellulosilyticus 1 28119 species 0 Bacteroides zoogleoformans 111445 0 Bacteroides caecimuris 390062 1 1796613 species Bacteroides ovatus 581979 0 species 28116 1 817 species 1 440520 Bacteroides fragilis 0 species 818 1 680757 Bacteroides thetaiotaomicron 0 species 290053 1 Bacteroides helcogenes 159301 0 1 species 28113 0 117440 Bacteroides heparinolyticus 7 family 2005525 0 429 832083 1 Tannerellaceae 3 genus 195950 0 51 33432 1 Tannerella 2620507 no rank 1 5785 0 1 712710 species 0 5785 Tannerella sp. oral taxon HOT-286 species 28112 1 27596 Tannerella forsythia 0 146 0 1 798222 Parabacteroides 3 375288 genus 308996 Parabacteroides distasonis 0 823 species 1 1 no rank 2649774 0 489080 1 2025876 species 0 Parabacteroides sp. CT06 489080 5 family 171550 0 15 1 170794 Rikenellaceae 2 239759 genus 140 0 Alistipes 168807 1 1 species 214856 0 168667 Alistipes finegoldii 1972 1 Mucinivorans 1 0 1611681 genus 2 1971 Mucinivorans hirudinis 0 1433126 species 1 Odoribacteraceae 1 103508 0 1 family 1853231 2 1 genus 283168 0 103507 103507 Odoribacter splanchnicus 0 species 28118 1 Marinilabiliales 1 6868 3 0 1970189 order 11 8 0 1 2267 Prolixibacteraceae 3 1471398 family Draconibacterium 2259 1 0 8 genus 1471399 2 Draconibacterium orientale 2251 0 species 1168034 1 family 1573805 2 1 2051 Marinifilaceae 0 1 1 2060722 genus 0 2050 0 2050 Marinifilaceae bacterium SPP2 1 1717717 species 948 0 family 1970190 2 2 0 Salinivirga 1 948 2 1970191 genus 946 Salinivirga cyanobacteriivorans 0 species 1307839 1 0 2 1 1599 Marinilabiliaceae 3 family 558415 1 1597 Alkalitalea 3 0 1193324 genus 2 0 1594 Alkalitalea saponilacus 1 species 889453 0 55 Bacteroidetes Order II. Incertae sedis 1 5037 7 order 1100069 1 4982 Rhodothermaceae 0 41 family 563843 6 1196022 no rank 1 2004 0 0 Rhodothermaceae bacterium RA 2004 1 species 1779382 genus 29548 2 Rhodothermus 1 2183 0 8 species 29549 1 Rhodothermus marinus 2175 0 146918 genus 2 1 754 Salinibacter 4 0 0 750 Salinibacter ruber 1 146919 species 22124 1 Sphingobacteriia 0 6 class 117747 24 200666 order 23 1 22118 Sphingobacteriales 17 0 Sphingobacteriaceae 22101 1 52 0 84566 family 22 1 1742 Pseudopedobacter 4 0 1649482 genus 2 1 species 151895 0 Pseudopedobacter saltans 1738 1572 0 84568 no rank 1 1 species 1986952 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1572 6 genus 84567 0 20 Pedobacter 7186 1 species 188932 1 1354 Pedobacter cryoconitis 0 species 430522 1 1844 Pedobacter steynii 0 0 1452 1 2628915 no rank 0 Pedobacter sp. PACM 27299 1452 1 1727164 species 0 1406 Pedobacter heparinus 1 984 species 363852 species 1 Pedobacter ginsengisoli 1110 0 Sphingobacterium 1 6446 0 22 genus 28453 6 2609468 no rank 4 5208 0 0 1476 Sphingobacterium sp. B29 1 species 1933220 1 743722 species 0 Sphingobacterium sp. 21 1275 species 2003121 1 Sphingobacterium sp. G1-14 1393 0 0 Sphingobacterium sp. ML3W 1064 1 species 1538644 species 1010 1 1216 Sphingobacterium mizutaii 0 Mucilaginibacter 1 3512 0 4 genus 423349 4 0 Mucilaginibacter gotjawali 1380 1 1550579 species 1 1234841 species 0 Mucilaginibacter sp. BJC16-A31 924 1 no rank 2617802 0 1204 1300914 species 1 1204 Mucilaginibacter sp. PAMC 26640 0 genus 929509 2 1 1591 Solitalea 0 2 1 species 995 0 Solitalea canadensis 1589 4 0 Saprospiria 2291 1 7 1937959 class 6 1936988 order 14 0 Saprospirales 2287 1 family 89374 2 595 0 1007 genus 2 1 595 Saprospira 12 0 0 Saprospira grandis 583 1 species 1008 3 family 1937961 0 1 Haliscomenobacteraceae 1 1678 5 0 1 1677 Haliscomenobacter 2 2349 genus 2350 species 1 1672 Haliscomenobacter hydrossis 0 class 768503 58 Cytophagia 1 44849 0 84 768507 order 57 44765 1 Cytophagales 136 0 family 563798 9 Cyclobacteriaceae 4701 1 0 4 1845 1 Cyclobacterium 0 5 genus 68288 3 0 863 Cyclobacterium amurskyense 1 320787 species 0 977 Cyclobacterium marinum 1 104 species genus 390846 2 1524 1 Echinicola 0 1 1523 Echinicola vietnamensis 0 390884 species 1 1 genus 246875 0 536 1 species 1727163 0 536 Algoriphagus sp. M8-2 2 232244 genus 2 0 792 1 Belliella 790 Belliella baltica 0 species 232259 1 3 1937968 family 5 0 Bernardetiaceae 1 1119 1937972 genus 2 1 1114 Bernardetia 4 0 0 1110 Bernardetia litoralis 1 999 species 3 1853234 family 3 0 Persicobacteraceae 1845 1 2 59740 genus 4 0 Persicobacter 1842 1 2664020 no rank 1 1838 0 species 1085624 1 Persicobacter sp. JZB09 1838 0 2 family 2762301 0 766 0 8 Marivirga 766 1 2 genus 869806 species 1006 1 758 Marivirga tractuosa 0 0 1 526 1 Amoebophilaceae 4 family 1501348 2 281119 genus 2 0 Candidatus Amoebophilus 1 230 228 Candidatus Amoebophilus asiaticus 0 species 281120 1 1 genus 273135 0 295 295 0 2641185 no rank 1 0 Cardinium endosymbiont of Encarsia pergandiella 295 1 249402 species Hymenobacteraceae 1 21017 0 32 family 1853232 16 3 genus 323449 0 28 1 2668 Pontibacter 0 1144 Pontibacter korlensis 1 species 400092 0 1496 Pontibacter akesuensis 1 388950 species 4 1379908 genus 18 0 3438 1 Rufibacter 1 512763 species 0 Rufibacter tibetensis 1406 0 2014 2 no rank 2639626 0 Rufibacter sp. DG31D 1063 1 1379910 species Rufibacter sp. DG15C 951 0 1379909 species 1 Hymenobacter 14879 1 87 0 89966 genus 8 1 species 1411621 0 Hymenobacter sedentarius 2421 1446467 species 1 Hymenobacter swuensis 2136 0 5 no rank 2615202 0 10235 2503 Hymenobacter sp. PAMC 26628 0 species 1484118 1 0 2327 Hymenobacter sp. PAMC 26554 1 species 1484116 0 2268 Hymenobacter sp. APR13 1 species 1356852 1385663 species 1 Hymenobacter sp. DG25A 1391 0 1746 Hymenobacter sp. DG25B 0 species 1385664 1 4 200667 family 3 0 1 3345 Flammeovirgaceae Flammeovirga 1 1750 0 9 genus 59739 2 1741 0 2637820 no rank 1 species 1191459 1 Flammeovirga sp. MY04 1741 0 1592 0 340671 no rank 1 1 species 1257021 0 Flammeovirgaceae bacterium 311 1592 15 family 89373 0 86 Cytophagaceae 1 11310 Cytophaga 1 1283 0 22 genus 978 2 0 Cytophaga hutchinsonii 1261 1 species 985 1097 0 genus 861914 1 2620963 no rank 1 1097 0 1 1834519 species 0 Fibrella sp. ES10-3-2-2 1097 Dyadobacter 1 1290 1 0 120831 genus 2 1289 Dyadobacter fermentans 0 species 94254 1 1 1039 Leadbetterella 19 0 319458 genus 2 species 316068 1 1020 Leadbetterella byssophila 0 1 genus 105 0 1474 1 species 106 0 1474 Runella slithyformis genus 107 6 5041 1 Spirosoma 0 13 Spirosoma sp. HA7 936 0 species 2057025 1 564064 species 1 918 Spirosoma rigui 0 1211326 species 1 Spirosoma aerolatum 909 0 1 species 1178516 0 1160 Spirosoma montaniterrae 1105 Spirosoma radiotolerans 0 1379870 species 1 3008 0 142182 phylum 8 0 10 Gemmatimonadetes 3008 1 8 class 219685 69 0 Gemmatimonadales 2998 1 7 219686 order 219687 family 6 Gemmatimonadaceae 2929 1 22 0 0 9 1311 1 Gemmatimonas 3 genus 173479 Gemmatimonas aurantiaca 593 0 173480 species 1 1 1379270 species 0 Gemmatimonas phototrophica 709 0 6 1596 1 Gemmatirosa 2 genus 1706036 species 861299 1 Gemmatirosa kalamazoonesis 1590 0 648 0 phylum 456828 2 0 4 648 1 Candidatus Cloacimonas 2 genus 456826 0 644 Candidatus Cloacimonas acidaminovorans 1 456827 species 5 65842 phylum 0 1607 0 10 Fibrobacteria 1 1607 5 class 204430 4 218872 order 2 0 Fibrobacterales 1 1597 3 family 204431 0 4 Fibrobacteraceae 1595 1 832 genus 2 1 1591 Fibrobacter 2 0 1589 Fibrobacter succinogenes 0 species 833 1 57 203691 phylum 0 43743 0 178 Spirochaetia 43743 1 57 class 203692 1 0 Brachyspirales 8464 1 7 1643686 order Brachyspiraceae 1 8463 313 0 143786 family 6 397 0 Brachyspira 8150 1 5 29521 genus Brachyspira intermedia 1148 0 84377 species 1 0 Brachyspira murdochii 1597 1 84378 species 0 1984 Brachyspira hyodysenteriae 1 159 species Brachyspira pilosicoli 3024 0 52584 species 1 order 1643688 8 3189 0 8 family 170 0 3 Leptospiraceae 1 3189 Leptospira 1 2839 9 0 171 genus 6 0 Leptospira biflexa 327 1 species 172 0 478 Leptospira alstonii 1 species 28452 173 species 1 Leptospira interrogans 818 0 1 species 28183 0 Leptospira santarosai 531 1 species 174 0 676 Leptospira borgpetersenii 0 347 1 genus 338321 347 Turneriella parva 0 29510 species 1 41 order 136 0 573 1 31912 Spirochaetales 17 1643685 family 2 0 3564 1 Borreliaceae Borrelia 1 1786 18 0 138 genus 8 1 47466 species 0 407 Borrelia miyamotoi 1 143 species 0 Borrelia anserina 216 1 141 species 0 Borrelia parkeri 208 species 44449 1 Borrelia recurrentis 197 0 205 Borrelia duttonii 0 species 40834 1 0 269 Borrelia turicatae 1 species 142 140 species 1 266 Borrelia hermsii 0 114 0 Borreliella 1776 1 8 64895 genus 1 139 species 0 Borreliella burgdorferi 258 Borrelia mayonii 218 0 species 1674146 1 Borreliella bissettii 239 0 64897 species 1 0 240 Borreliella afzelii 1 29518 species species 62088 1 Borreliella valaisiana 144 0 species 29519 1 396 Borreliella garinii 0 species 664662 1 Borreliella bavariensis 167 0 family 137 23 Spirochaetaceae 27775 1 0 394 1 1616789 genus 0 1153 1307761 species 1 1153 Salinispira pacifica 0 genus 146 3 1 2215 Spirochaeta 0 2 0 Spirochaeta africana 1056 1 species 46355 1157 Spirochaeta thermophila 0 species 154 1 2 genus 1911556 0 4 Sediminispirochaeta 1246 1 55206 species 1 Sediminispirochaeta smaragdinae 1242 0 157 genus 12 Treponema 1 19460 977 0 1381 Treponema brennaborense 0 species 81028 1 150829 species 1 Treponema azotonutricium 1102 0 2638727 no rank 1 3337 0 0 Treponema sp. OMZ 838 3337 1 1539298 species 53435 species 1 86 Treponema paraluiscuniculi 0 1 160 species 0 Treponema pallidum 87 167 species 1 3784 Treponema succinifaciens 0 0 663 Treponema pedis 1 species 409322 1 species 215591 0 750 Treponema caldarium 1 species 158 0 Treponema denticola 2106 0 1352 Treponema primitia 1 species 88058 3835 Treponema putidum 0 221027 species 1 4 genus 399320 0 3 3307 1 Sphaerochaeta 1 species 1131703 0 1371 Sphaerochaeta globosa species 273376 1 Sphaerochaeta coccoides 854 0 0 Sphaerochaeta pleomorpha 1079 1 1131707 species 200940 phylum 9 1280 0 9 67799 class 3 0 1 1280 Thermodesulfobacteria Thermodesulfobacteriales 1 1277 4 0 188710 order 8 7 family 188711 0 5 Thermodesulfobacteriaceae 1 1273 Thermodesulfatator 1 381 3 0 241192 genus 2 1 171695 species 0 378 Thermodesulfatator indicus 0 1 648 1 Thermodesulfobacterium 3 genus 1740 species 1741 1 Thermodesulfobacterium commune 237 0 1295609 species 1 410 Thermodesulfobacterium geofontis 0 1 444090 genus 0 239 1 1653476 species 0 239 Caldimicrobium thiodismutans 13 phylum 40117 0 3571 1 3571 Nitrospira 0 11 class 203693 13 12 order 189778 0 30 Nitrospirales 3560 1 11 189779 family 18 0 Nitrospiraceae 3530 1 0 529 1 28261 genus 1 28262 species 0 Thermodesulfovibrio yellowstonii 529 1994 1 Nitrospira 8 0 1234 genus 5 1 1325564 species 0 359 Nitrospira japonica Nitrospira defluvii 394 0 330214 species 1 1 42253 species 0 Nitrospira moscoviensis 827 Candidatus Nitrospira inopinata 406 0 1715989 species 1 Leptospirillum 989 1 0 3 genus 179 4 species group 261385 1 361 0 0 361 Leptospirillum sp. Group II 'CF-1' 1 species 1660083 0 352 1 species group 261386 0 Leptospirillum ferriphilum 352 1 178606 species 655606 species group 1 273 0 180 species 1 Leptospirillum ferrooxidans 273 0 clade 2498710 3 313 0 67814 phylum 3 313 0 class 693071 3 313 1 Caldisericia 0 1 312 0 order 693072 2 2 693073 family 0 312 693074 genus 2 Caldisericum 1 312 1 0 1 species 693075 0 311 Caldisericum exile 8 phylum 200930 0 2477 class 68337 8 1 2477 Deferribacteres 0 6 7 order 191393 0 8 Deferribacterales 1 2471 2463 1 Deferribacteraceae 0 20 family 191394 6 1 genus 2351 0 565 species 2352 1 Flexistipes sinusarabici 565 0 genus 545865 1 439 0 439 Calditerrivibrio nitroreducens 0 species 477976 1 Denitrovibrio 1 727 0 1 genus 117999 2 1 118000 species 0 Denitrovibrio acetiphilus 726 712 0 53572 genus 1 0 Deferribacter desulfuricans 712 1 species 197162 2 0 Elusimicrobia 1595 1 6 74152 phylum 0 309 1 99260 no rank 167965 species 1 309 uncultured Termite group 1 bacterium 0 952 0 447830 class 3 order 1783344 3 952 1 Endomicrobiales 0 1 2 family 1783343 0 951 951 0 1408194 genus 2 1 species 1408281 0 622 Endomicrobium proavitum 0 329 Candidatus Endomicrobium trichonymphae 1 species 1408204 0 332 1 class 641853 641854 order 1 332 0 1 641876 family 0 332 332 0 423604 genus 1 1 species 423605 0 Elusimicrobium minutum 332 2138240 phylum 3 275 0 3 class 2138243 0 275 1 0 Coprothermobacterales 275 1 3 2138246 order 2 family 2138247 0 274 0 1 Coprothermobacter 274 1 2 genus 68335 Coprothermobacter proteolyticus 273 0 35786 species 1 4 68297 phylum 0 1237 0 1237 4 203486 class order 203487 4 1237 1 Dictyoglomales 0 1 3 203488 family 0 1236 3 genus 13 0 1 Dictyoglomus 1236 1 0 Dictyoglomus turgidum 655 1 species 513050 1 14 species 0 Dictyoglomus thermophilum 580