members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4683 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 18654 9172314 40164 superkingdom 2157 0 278 1 0 1783276 clade 29 1801631 0 1 29 phylum 0 2490204 1 29 genus 0 1920749 Candidatus Micrarchaeota archaeon Mia14 1 29 species 3758 clade 1783275 0 53 38 28889 0 phylum 2642 2642 1 class 183924 1 0 Thermoprotei 38 617 order 0 2266 14 1 114378 0 Thermofilaceae 6 226 1 family Thermofilum 2 2268 0 5 1 225 genus 1 Thermofilum carboxyditrophus 0 1483572 species 95 Thermofilum adornatus 1365176 0 1 59 species 10 species 1550241 0 Thermofilum uzonense 1 1 Thermofilum pendens 2269 0 species 59 family 391 1 8 0 2267 1 Thermoproteaceae 1 0 76886 genus 76 76 species 0 76887 Caldivirga maquilingensis 1 genus 1 131 3 Vulcanisaeta 1 164450 0 69 species 985052 0 Vulcanisaeta moutnovskia 1 61 species Vulcanisaeta distributa 0 164451 1 1 2276 0 genus 69 69 species 2277 0 Pyrobaculum islandicum 1 114 genus 2270 0 2 1 Thermoproteus tenax 0 2271 species 42 184117 0 Thermoproteus uzoniensis 1 72 species 8 0 2281 order 1168 8 118883 0 family 1168 41980 0 2 63 genus 18 species Metallosphaera cuprina 0 1006005 1 45 species Metallosphaera sedula 43687 0 1 299 genus 0 69655 1 1 0 111955 Sulfolobus tokodaii species 299 501 genus 0 2284 3 215 species Sulfolobus islandicus 0 43080 1 species 74 1 Sulfolobus acidocaldarius 2285 0 212 no rank 0 2641160 1 1 Sulfolobus sp. A20 0 1891280 species 212 genus 133 1 2100760 0 Sulfolobus solfataricus 2287 0 1 133 species 12914 0 1 172 genus 1 Acidianus hospitalis 563177 0 species 172 114380 0 13 555 order family 420 9 0 2272 genus 53 1 477695 0 53 species 0 1200300 Thermogladius calderae 1 2279 1 0 Staphylothermus 3 135 1 genus species 31 1 Staphylothermus hellenicus 0 84599 1 0 2280 Staphylothermus marinus species 103 genus 130 2 0 2273 species 44 1 2275 0 Desulfurococcus mucosus species 86 1 94694 0 Desulfurococcus amylolyticus genus 44 1 54253 0 1 0 54254 Thermosphaera aggregans species 44 58 genus 0 54258 2 21 species 54259 0 Ignicoccus islandicus 1 species 37 1 0 160233 Ignicoccus hospitalis family 1 135 4 Pyrodictiaceae 2307 1 0 genus 58 1 0 54247 58 species 0 54248 Hyperthermus butylicus 1 1 0 2308 genus 32 32 species 1273541 0 Pyrodictium delaneyi 1 1 0 54251 genus 44 species 44 1 Pyrolobus fumarii 0 54252 2 871006 0 order 301 1 0 871007 family 71 genus 71 1 0 105850 71 species 242703 0 Acidilobus saccharovorans 1 1 255472 0 family 230 genus 230 1 200414 0 1 Caldisphaera lagunensis 0 200415 species 230 14 651137 0 phylum 1074 0 1 1643678 Nitrososphaeria 7 236 1 class 3 1968909 1 0 Candidatus Nitrosocaldales order 68 1 family 67 1 2 1 1968910 0 Candidatus Nitrosocaldaceae 66 genus 498374 0 1 species 66 1 0 2045011 Candidatus Nitrosocaldus islandicus 3 3 1033996 0 Nitrososphaerales order 167 1 1033997 0 2 164 family genus 1 164 2 Nitrososphaera 0 497726 1 0 1034015 Nitrososphaera viennensis 1 163 species 1 534 order Nitrosopumilales 0 3 31932 4 338190 0 3 531 family 1 1993653 0 genus 132 species 132 1 Candidatus Nitrosomarinus catalina 0 1898749 399 genus 338191 0 2 species 141 1 0 1580092 Candidatus Nitrosopumilus adriaticus species 258 1 Candidatus Nitrosopumilus sediminis 1229909 0 no rank 304 3 651142 0 genus 186 2 1825023 0 species 99 1 Candidatus Nitrosotenuis cloacae 1603555 0 87 species Candidatus Nitrosotenuis sp. AQ6f 0 1846278 1 1593364 0 1 118 genus 118 species 1410606 0 Candidatus Nitrosopelagicus brevis 1 42 phylum 51967 0 1 498845 0 1 42 genus 42 species 0 498846 Candidatus Korarchaeum cryptofilum 1 phylum 36377 1 224 0 1 28890 Euryarchaeota 1 4310 class Thermococci 3 183968 0 41 0 4 2258 Thermococcales 40 4307 1 order family 4303 1 39 0 2259 11 Thermococcaceae genus 81 1 0 83867 Palaeococcus pacificus 0 971279 1 81 species 0 1 2260 Pyrococcus 8 574 1 genus species 94 1 2261 0 Pyrococcus furiosus 1 0 1609559 Pyrococcus kukulkanii species 70 no rank 116 2 0 2629106 87 species Pyrococcus sp. ST04 1183377 0 1 342949 0 Pyrococcus sp. NA2 1 29 species species 95 1 Pyrococcus abyssi 0 29292 0 1008460 Pyrococcus yayanosii 1 90 species 108 species 0 53953 Pyrococcus horikoshii 1 Thermococcus 2263 70 0 29 1 3637 genus species 211 1 187878 0 Thermococcus gammatolerans no rank 754 6 2627626 0 Thermococcus sp. P6 0 122420 1 26 species 218 species Thermococcus sp. 4557 0 1042877 1 species 185 1 0 2008440 Thermococcus sp. 5-4 113 species Thermococcus sp. EXT12c 0 2016361 1 1 Thermococcus sp. 2319x1 0 1674923 species 90 species 122 1 246969 0 Thermococcus sp. AM4 1 0 342948 Thermococcus onnurineus species 127 species 132 1 Thermococcus celer 0 2264 66 species 0 72803 Thermococcus siculi 1 131 species 110164 0 Thermococcus guaymasensis 1 101 species Thermococcus thioreducens 277988 0 1 156 species Thermococcus litoralis 0 2265 1 154 species Thermococcus paralvinellae 582419 0 1 106 species Thermococcus profundus 49899 0 1 128 species Thermococcus piezophilus 0 1712654 1 species 103 1 195522 0 Thermococcus nautili 152 species Thermococcus radiotolerans 0 187880 1 71997 0 Thermococcus gorgonarius 1 117 species Thermococcus barossii 0 54077 1 144 species 105 species 0 53952 Thermococcus peptonophilus 1 1 Thermococcus eurythermalis 0 1505907 species 114 1 54262 0 Thermococcus chitonophagus species 69 1 Thermococcus kodakarensis 311400 0 species 132 1 Thermococcus sibiricus 172049 0 species 155 194 species 55802 0 Thermococcus barophilus 1 0 163003 Thermococcus cleftensis 1 117 species species 99 1 Thermococcus pacificus 0 71998 class 649 8 183980 0 8 0 2231 order 649 649 family 0 2232 8 0 54260 1 58 genus species 58 1 0 54261 Ferroglobus placidus 2 0 190818 genus 195 565033 0 Geoglobus acetivorans 1 98 species 1 Geoglobus ahangari 0 113653 species 97 1 396 genus Archaeoglobus 0 1 2233 5 99 species Archaeoglobus fulgidus 0 2234 1 species 111 1 58290 0 Archaeoglobus veneficus 84156 0 Archaeoglobus profundus 1 77 species Archaeoglobus sulfaticallidus 1316941 0 1 108 species 112 2290931 0 clade 21393 Methanomicrobia 0 10 224756 49 1 10506 class 503 1 order 15 570264 0 Methanocellales 4 0 570265 3 488 family genus 1 488 3 Methanocella 2 570266 0 Methanocella conradii 1175444 0 1 99 species species 387 1 0 1175445 Methanocella arvoryzae order 7196 1 27 94695 11 0 Methanosarcinales 143067 0 2 551 family 2 0 2222 genus 551 1 Methanosaeta harundinacea 301375 0 species 313 238 species 0 2223 Methanothrix soehngenii 1 Methanosarcinaceae 0 3 2206 24 1 6634 family 199 genus 2321 0 1 0 2322 Methanohalobium evestigatum 1 199 species 0 2175 2 392 genus 1 2177 0 Methanohalophilus halophilus species 218 2176 0 Methanohalophilus mahii 1 174 species genus 286 1 3 2225 1 0 Methanococcoides species 117 1 Methanococcoides burtonii 29291 0 168 species Methanococcoides methylutens 0 2226 1 genus 5183 1 13 2207 16 0 Methanosarcina 299 species 170861 0 Methanosarcina lacustris 1 species 1092 1 2208 0 Methanosarcina barkeri species 400 1 0 2214 Methanosarcina acetivorans 0 2215 Methanosarcina vacuolata 1 301 species Methanosarcina thermophila 2210 0 1 307 species species 520 1 0 2209 Methanosarcina mazei 430 species 0 38027 Methanosarcina siciliae 1 1436 no rank 0 2644672 4 species 409 1 Methanosarcina sp. MTP4 0 1434100 418 species Methanosarcina sp. Kolksee 0 1434099 1 Methanosarcina sp. WH1 0 1434102 1 329 species 0 1434103 Methanosarcina sp. WWM596 1 280 species Methanosarcina horonobensis 0 418008 1 382 species genus 134 1 0 196136 1 0 39669 Methanosalsum zhilinae species 134 271 1 genus 2220 2 0 Methanolobus 2 420950 0 Methanolobus psychrophilus 1 269 species 166 genus 101191 0 1 166 species Methanomethylovorans hollandica 101192 0 1 17 9 2191 0 Methanomicrobiales order 2797 1 family 194 1 0 196137 194 genus 2202 0 1 1 0 2203 Methanospirillum hungatei species 194 6 0 1198451 3 Methanoregulaceae family 815 1 370 1 genus 0 2 475087 Methanosphaerula 2 1 Methanosphaerula palustris 475088 0 species 368 442 1 genus 395331 3 0 Methanoregula 3 1 Methanoregula boonei 358766 0 species 115 species 324 1 Methanoregula formicica 882104 0 family 387 2 88404 0 1 387 genus Methanocorpusculum 0 2192 1 2 386 species Methanocorpusculum labreanum 0 83984 1 7 Methanomicrobiaceae 1 2194 0 family 1 1392 genus 1080 1 4 0 45989 14 Methanoculleus 1 Methanoculleus bourgensis 83986 0 species 345 no rank 309 1 0 2619537 309 species Methanoculleus sp. MAB1 0 86622 1 2198 0 Methanoculleus marisnigri 1 412 species 0 1 230355 Methanolacinia 2 311 1 genus 0 54120 Methanolacinia petrolearia 1 310 species 63 Halobacteria 0 183963 62 class 1 10887 order 4300 1 25 0 40 2235 Halobacteriales 8 7 2236 0 Halobacteriaceae family 1284 1 1 0 1656823 genus 112 species 112 1 Halanaeroarchaeum sulfurireducens 1604004 0 4 16 2239 0 Halobacterium genus 849 1 species 215 1 2242 0 Halobacterium salinarum 1 2668073 0 no rank 292 292 species 751944 0 Halobacterium sp. DL1 1 1 Halobacterium hubeiense 0 1407499 species 326 0 332246 1 200 genus species 200 1 Halalkalicoccus jeotgali 413810 0 genus 116 1 0 1980514 species 116 1 Halodesulfurarchaeum formicicum 1873524 0 family 2976 1 16 0 1963268 20 Haloarculaceae 5 0 2237 18 Haloarcula genus 1465 1 1 Haloarcula hispanica 0 51589 species 435 1 0 2624677 no rank 360 1592728 0 Haloarcula sp. CBA1115 1 360 species species 234 1 1932004 0 Haloarcula taiwanensis 1 Haloarcula marismortui 2238 0 species 418 3 0 5 63743 Natronomonas genus 498 1 0 416273 Natronomonas moolapensis 1 228 species Natronomonas pharaonis 0 2257 1 265 species 1 430 genus Halorhabdus 146825 2 0 3 146826 0 Halorhabdus utahensis 1 225 species 0 430914 Halorhabdus tiamatea 1 203 species genus 1 279 2 Halorientalis 1073987 3 0 no rank 276 1 0 2648975 species 276 1 1932360 0 Halorientalis sp. IM1011 0 203135 4 Halomicrobium 2 284 1 genus 1 57705 0 Halomicrobium mukohataei species 280 order 3026 1 18 0 1644055 62 Haloferacales Haloferacaceae 4 1644056 0 8 1 1502 family genus 1 285 2 Halogeometricum 0 1 60846 1 Halogeometricum borinquense 60847 0 species 284 genus 85 1 0 293431 85 species Haloquadratum walsbyi 293091 0 1 4 0 14 2251 Haloferax genus 1128 1 35746 0 Haloferax gibbonsii 1 476 species 1 Haloferax volcanii 2246 0 species 352 species 286 1 2252 0 Haloferax mediterranei 1 1220 family Halorubraceae 0 1963271 8 8 genus 1 313 2 Halopenitus 20 1209988 0 species 293 1 0 1048396 Halopenitus persicus 0 1644057 1 Salinigranum 2 338 1 genus 0 755307 Salinigranum rubrum 1 337 species 561 1 genus 0 5 56688 Halorubrum 3 2247 0 Halorubrum lacusprofundi 1 273 species 283 species Halorubrum trapanicum 29284 0 1 0 2678336 1 242 no rank 242 species halophilic archaeon DL31 0 756883 1 19 20 1644060 0 Natrialbales order 3499 1 0 23 1644061 Natrialbaceae 18 3479 1 family genus 521 1 3 121871 3 0 Haloterrigena 358 species 62320 0 Haloterrigena turkmenica 1 160 species 588898 0 Haloterrigena daqingensis 1 2 0 1269201 1 Salinarchaeum genus 262 1 no rank 261 1 2621923 0 1 0 1333523 Salinarchaeum sp. Harcht-Bsk1 species 261 genus 422 1 29287 0 1 Natronococcus occultus 29288 0 species 422 649 1 genus 88723 1 0 Natrinema 3 species 373 1 0 69525 Natrinema pellirubrum 2622230 0 1 275 no rank species 275 1 Natrinema sp. J7-2 0 406552 213 genus 0 2256 1 213 species Natronobacterium gregoryi 0 44930 1 genus 1 276 2 Halostagnicola 0 5 353799 1 0 353800 Halostagnicola larsenii species 271 genus 260 1 2 3 63742 0 Natrialba 13769 0 Natrialba magadii 1 257 species 0 203193 1 456 genus 1 Halobiforma lacisalsi 0 229731 species 456 2 Halopiger 387342 4 0 genus 1 397 387343 0 Halopiger xanaduensis 1 393 species 7944 clade 0 2283794 43 3418 1 class 0 7 183939 Methanococci 18 order 3411 1 17 0 2182 4 Methanococcales 2183 21 0 Methanococcaceae 7 1994 1 family Methanococcus 1 2184 0 5 1 1726 genus species 228 1 Methanococcus aeolicus 42879 0 1 0 39152 Methanococcus maripaludis species 1188 132 species Methanococcus voltae 2188 0 1 Methanococcus vannielii 0 2187 1 177 species 1 155862 0 genus 247 1 155863 0 Methanothermococcus okinawensis species 247 196117 3 0 Methanocaldococcaceae 9 1413 1 family 0 196118 6 1205 genus 1 Methanocaldococcus jannaschii 0 2190 species 298 Methanocaldococcus infernus 0 67760 1 134 species 0 83171 Methanocaldococcus fervens 1 215 species 260 no rank 2641196 0 1 1 644281 0 Methanocaldococcus sp. FS406-22 species 260 Methanocaldococcus vulcanius 73913 0 1 160 species 138 species Methanocaldococcus bathoardescens 1301915 0 1 genus 205 1 2 196119 1 0 Methanotorris 1 Methanotorris igneus 0 2189 species 204 0 183925 11 Methanobacteria 25 4526 1 class 24 0 4 2158 Methanobacteriales order 4515 1 family 1 159 2 Methanothermaceae 0 2178 1 0 2179 1 158 genus species 158 1 Methanothermus fervidus 2180 0 family 4352 21 0 2159 0 2172 3 Methanobrevibacter 7 2653 1 genus 1 2173 0 Methanobrevibacter smithii species 408 species 474 1 Methanobrevibacter olleyae 0 294671 391 species 0 83816 Methanobrevibacter ruminantium 1 872 no rank 0 2638681 2 species 404 1 224719 0 Methanobrevibacter sp. AbM4 1 1609968 0 Methanobrevibacter sp. YE315 species 468 species 505 1 Methanobrevibacter millerae 0 230361 genus 1 963 8 Methanobacterium 0 2160 1 2627676 0 2 172 no rank species 70 1 Methanobacterium sp. MB1 1379702 0 species 102 1 1911685 0 Methanobacterium sp. MZ-A1 species 117 1 Methanobacterium formicicum 2162 0 1 118062 0 Methanobacterium congolense species 149 0 868131 Methanobacterium paludis 1 168 species 1 877455 0 Methanobacterium lacus species 246 1 Methanobacterium subterraneum 0 59277 species 110 genus 182 1 5 1 145260 0 Methanothermobacter 48 species 145263 0 Methanothermobacter marburgensis 1 49 species Methanothermobacter thermautotrophicus 145262 0 1 0 145261 Methanothermobacter wolfeii 1 29 species 55 no rank 2631116 0 1 1 Methanothermobacter sp. CaT2 866790 0 species 55 genus 554 1 2316 0 554 species 2317 0 Methanosphaera stadtmanae 1 clade 2080 19 2283796 0 1 1918 class Thermoplasmata 0 183967 13 17 1235850 3 0 Methanomassiliicoccales 7 622 1 order 377 1 family 0 1577788 1 Methanomassiliicoccaceae 4 genus 1 280 2 Methanomassiliicoccus 1080709 1 0 1406512 0 Candidatus Methanomassiliicoccus intestinalis 1 279 species 96 genus 0 1607807 1 1 Candidatus Methanoplasma termitum 0 1577791 species 96 2 0 2517203 family 242 2 1291539 2 0 Candidatus Methanomethylophilus genus 242 1 240 species 0 1291540 Candidatus Methanomethylophilus alvus 1 232 no rank 0 1234666 1 species 232 1 methanogenic archaeon ISO4-H5 0 1495144 order 1051 8 2301 0 0 1747776 2 84 family 84 1 genus 1 1747777 0 Cuniculiplasma 2 83 species 1673428 0 Cuniculiplasma divulgatum 1 family 118 2 0 46659 genus 118 2 2302 0 species 65 1 50339 0 Thermoplasma volcanium 1 0 2303 Thermoplasma acidophilum species 53 1 46630 0 family 183 183 genus 0 46631 1 183 species 0 82076 Picrophilus torridus 1 1919231 0 1 376 no rank species 376 1 Thermoplasmatales archaeon BRNA1 1054217 0 family 290 2 90142 0 genus 290 2 0 74968 species 181 1 0 97393 Ferroplasma acidarmanus 109 species Ferroplasma acidiphilum 0 74969 1 1803510 0 2 162 clade genus 162 2 379546 0 Aciduliprofundum boonei 0 379547 1 108 species 1 0 2633939 no rank 54 Aciduliprofundum sp. MAR08-339 673860 0 1 54 species 1 name 0 0 1 9113496 superkingdom Bacteria 2 88 0 4373 5415501 clade 1783272 0 1701 656 0 74 201174 Actinobacteria phylum 567932 1 647 no rank 0 1752188 4 1 Actinobacteria bacterium IMCC26077 1848755 0 species 165 1 0 1848255 Actinobacteria bacterium IMCC25003 species 142 Actinobacteria bacterium IMCC26103 0 1848756 1 188 species 152 species Actinobacteria bacterium IMCC19121 0 1848754 1 Rubrobacteria 0 9 84995 6 1 1277 class Rubrobacterales 84996 27 0 5 1 1268 order 0 84997 12 Rubrobacteraceae 4 1241 1 family 1 1229 genus Rubrobacter 0 15 42255 3 1 Rubrobacter xylanophilus 0 49319 species 742 1 Rubrobacter radiotolerans 42256 0 species 472 1 74653 class Coriobacteriia 587 84998 0 32 order 1 31531 14 Coriobacteriales 0 458 84999 9124 1 family 112 1643824 0 Atopobiaceae 7 784 genus 0 2767353 1 species 784 1 Atopobium parvulum 0 1382 genus 3 1 Atopobium 0 1380 4 Olsenella 0 133925 119 genus 1 8225 0 1805478 Olsenella sp. Marseille-P2300 1 4094 species 1 2638792 0 no rank 1533 species 1533 1 0 712411 Olsenella sp. oral taxon 807 2479 species Olsenella uli 133926 0 1 6 325 84107 0 Coriobacteriaceae family 21949 1 2 4 33870 0 Coriobacterium genus 1632 1 33871 0 Coriobacterium glomerans 1 1628 species no rank 3117 1 0 84113 1 Coriobacteriaceae bacterium 68-1-3 1531429 0 species 3117 16875 1 genus 82 102106 0 Collinsella 2 Collinsella aerofaciens 74426 0 1 16793 species 17 0 754 1643822 Eggerthellales order 42535 1 family 1 41781 16 Eggerthellaceae 0 7903 1643826 2073 1 genus 8 79603 0 Denitrobacterium 2 1 79604 0 Denitrobacterium detoxificans species 2065 Cryptobacterium 0 4 84162 2 1 834 genus 1 84163 0 Cryptobacterium curtum species 830 2 Slackia 84108 8 0 genus 1 3803 1 Slackia heliotrinireducens 0 84110 species 3795 3 0 644652 56 Gordonibacter genus 9582 1 species 4462 1 Gordonibacter massiliensis 0 1841863 species 5064 1 0 1335613 Gordonibacter urolithinfaciens 84111 276 0 Eggerthella 3 12021 1 genus 1 Eggerthella lenta 0 84112 species 9069 no rank 2676 1 2648737 0 1 Eggerthella sp. YY7918 502558 0 species 2676 genus 1394 1 1981050 0 0 1944646 Phoenicibacter massiliensis 1 1394 species 2 Adlercreutzia 0 4 447020 genus 1 4171 1 Adlercreutzia equolifaciens 446660 0 species 4167 4 84992 0 Acidimicrobiia 7 1022 1 class order 1 1018 6 Acidimicrobiales 0 84993 44 17 84994 0 Acidimicrobiaceae 3 233 1 family 2 Acidimicrobium 53634 1 0 genus 1 216 species 215 1 0 53635 Acidimicrobium ferrooxidans 741 family 0 2448023 2 2 0 682522 5 Ilumatobacter genus 741 1 species 736 1 Ilumatobacter coccineus 0 467094 601 3170 1760 0 Actinobacteria class 488661 1 no rank 153 1 52018 0 153 species Actinobacteria bacterium IMCC26256 1650658 0 1 4 Glycomycetales 85014 2 0 order 1 826 1 824 family Glycomycetaceae 0 85034 7 3 817 1 genus 23 283810 0 Stackebrandtia 2 Stackebrandtia nassauensis 0 283811 1 794 species 8 1643682 15 0 Geodermatophilales order 2852 1 Geodermatophilaceae 85030 86 0 7 1 2837 family 2 0 88138 19 Modestobacter genus 1047 1 1 0 477641 Modestobacter marinus species 1028 970 1 genus 0 4 1860 Geodermatophilus 2 1 Geodermatophilus obscurus 1861 0 species 966 6 38501 0 Blastococcus 2 734 1 genus species 728 1 Blastococcus saxobsidens 0 138336 3 0 1643684 order 962 1 962 family Nakamurellaceae 0 85031 19 3 0 53460 10 Nakamurella 2 943 1 genus 933 species Nakamurella multipartita 53461 0 1 3 622450 0 order 720 3 Actinopolysporaceae 6 622451 0 family 1 720 genus 1 714 2 Actinopolyspora 0 1849 5 709 species 0 414996 Actinopolyspora erythraea 1 0 2039638 6 Candidatus Nanopelagicales 12 1778 1 order 2162846 0 11 1772 family 1 2039639 0 Candidatus Nanopelagicus 4 475 1 genus 1 0 1884634 Candidatus Nanopelagicus limnes species 156 1 Candidatus Nanopelagicus abundans 0 1884916 species 147 171 species Candidatus Nanopelagicus hibericus 0 1884915 1 7 Candidatus Planktophila 622681 9 0 genus 1 1297 species 87 1 Candidatus Planktophila vernalis 1884907 0 Candidatus Planktophila versatilis 1884905 0 1 337 species 1 Candidatus Planktophila sulfonica 0 1884904 species 216 179 species Candidatus Planktophila dulcis 1884914 0 1 255 species 0 1884913 Candidatus Planktophila lacus 1 Candidatus Planktophila limnetica 573600 0 1 214 species 901 order 622452 0 3 family 1 901 3 Kineosporiaceae 0 83778 19 genus 882 1 2 2 33981 0 Kineococcus species 880 1 0 131568 Kineococcus radiotolerans order 62986 1 146 588 85006 0 Micrococcales 2 125316 0 family 623 genus 1 623 2 Beutenbergia 38 84756 0 1 84757 0 Beutenbergia cavernae species 585 1 737 family Sanguibacteraceae 2 145360 0 3 1 735 genus Sanguibacter 0 22 60919 2 1 60920 0 Sanguibacter keddieii species 713 no rank 52 2 0 577468 1 52 genus Tropheryma 1 2038 0 2 51 species Tropheryma whipplei 0 2039 1 1 249 family Dermatophilaceae 0 85018 2 2 genus 247 1 1862 0 247 species 1863 0 Dermatophilus congolensis 1 6 Cellulomonadaceae 21 85016 0 family 1 2663 2642 1 genus 0 44 1707 Cellulomonas 5 1 0 1711 Cellulomonas flavigena species 637 Cellulomonas gilvus 0 11 1 554 species 908 species 1708 0 Cellulomonas fimi 1 2620175 0 1 499 no rank 499 species 0 2003551 Cellulomonas sp. PSBB021 1 Dermabacteraceae 0 85020 16 11 1 5219 family 2 Dermabacter 0 1 36739 genus 1 364 Dermabacter vaginalis 1630135 0 1 363 species 6 108 43668 0 Brachybacterium genus 4462 1 988 species Brachybacterium ginsengisoli 0 1331682 1 Brachybacterium sp. VR2415 0 2017485 1 732 species 923 no rank 2623841 0 1 species 923 1 0 1903186 Brachybacterium sp. P6-10-X1 0 43669 Brachybacterium faecium 1 836 species 1 Brachybacterium sp. VM2412 0 2017484 species 875 2 Devriesea 0 472568 8 genus 1 377 species 369 1 0 472569 Devriesea agamarum 21329 1 family 85023 228 0 Microbacteriaceae 49 6 Clavibacter 1573 122 0 genus 1 2730 1 2608 species Clavibacter michiganensis 0 28447 515 5 31963 0 Clavibacter nebraskensis 1 568 subspecies 1874630 0 Clavibacter capsici 1 545 subspecies 538 subspecies 31964 0 Clavibacter sepedonicus 1 1 33014 0 Clavibacter insidiosus subspecies 442 1 447237 0 genus 660 no rank 660 1 0 2626248 660 species 0 1795630 Frondihabitans sp. PAMC 28766 1 112 1 genus 1705353 2 0 Aurantimicrobium 2 110 species Aurantimicrobium minutum 708131 0 1 0 337004 1 Microcella 2 517 1 genus 516 species 0 279828 Microcella alkaliphila 1 1631 1 genus 69578 10 0 Cryobacterium 3 0 2649013 1 826 no rank 1 Cryobacterium sp. LW097 1978566 0 species 826 795 species 0 670052 Cryobacterium arcticum 1 14 0 130 33882 Microbacterium genus 8491 1 species 741 1 162426 0 Microbacterium hominis 8 0 2609290 no rank 5139 558 species 367477 0 Microbacterium sp. XT11 1 1 Microbacterium sp. No. 7 1714373 0 species 743 1 0 1795053 Microbacterium sp. PAMC 28756 species 744 1 Microbacterium sp. 1.5R 0 1916917 species 584 783 species 2103230 0 Microbacterium sp. str. 'China' 1 species 475 1 Microbacterium sp. CGR1 0 1696072 1938334 0 Microbacterium sp. TPU 3598 1 566 species Microbacterium sp. BH-3-3-3 0 1906742 1 686 species 1 Microbacterium aurum 0 36805 species 929 0 2033 Microbacterium testaceum 1 516 species 1 Microbacterium paludicola 300019 0 species 597 1 84292 0 Microbacterium chocolatum species 439 Cnuibacter 1759331 2 0 2 1 614 genus species 612 1 Cnuibacter physcomitrellae 1619308 0 4 44 2034 0 Curtobacterium genus 2133 1 2 257496 0 no rank 1351 species 660 1 0 1905847 Curtobacterium sp. BH-2-1-1 species 691 1 Curtobacterium sp. MR_MD2014 0 1561023 species 738 1 69373 0 Curtobacterium pusillum genus 598 1 3 6 33886 0 Rathayibacter 183 species 145458 0 Rathayibacter toxicus 1 species 409 1 Rathayibacter tritici 0 33888 genus 1 957 2 Agromyces 0 33877 9 species 948 1 453304 0 Agromyces aureus 0 1655488 3 367 no rank 3 1655489 0 clade 367 3 Rhodoluna 529883 2 0 genus 1 367 1 535712 0 Candidatus Rhodoluna planktonica species 156 1 529884 0 Rhodoluna lacicola species 209 Pontimonas 1434032 1 0 2 1 161 genus 1 Pontimonas salivibrio 0 1159327 species 160 4 518733 0 Microterricola 2 761 1 genus 1 Microterricola viridarii 0 412690 species 757 1369 1 genus 0 110932 32 Leifsonia 2 species 1337 1 Leifsonia xyli 1575 0 family 1 22083 39 Micrococcaceae 0 703 1268 2 Paenarthrobacter 4 1742992 0 genus 1 457 43663 0 Paenarthrobacter aurescens 1 453 species 1 1645 0 genus 141 Renibacterium salmoninarum 0 1646 1 141 species 1269 12 0 Micrococcus 2 677 1 genus 665 species Micrococcus luteus 1270 0 1 1868332 27 0 Neomicrococcus 2 1163 1 genus Neomicrococcus aestuarii 556325 0 1 1136 species 1742989 6 0 Glutamicibacter 2 1043 1 genus 1 0 256701 Glutamicibacter arilaitensis species 1037 1 748 genus Sinomonas 0 5 596707 2 species 743 1 37927 0 Sinomonas atrocyanea 4 1742993 25 0 Pseudarthrobacter genus 2277 1 1 Pseudarthrobacter phenanthrenivorans 361575 0 species 779 734 species 121292 0 Pseudarthrobacter sulfonivorans 1 1 Pseudarthrobacter chlorophenolicus 0 85085 species 739 Arthrobacter 1663 226 0 15 1 9915 genus 0 235627 12 7794 no rank 382 species 0 1118963 Arthrobacter sp. Rue61a 1 Arthrobacter sp. ATCC 21022 0 1771959 1 496 species 1849032 0 Arthrobacter sp. U41 1 675 species 1 0 1357915 Arthrobacter sp. QXT-31 species 836 Arthrobacter sp. LS16 1690248 0 1 829 species 1 290399 0 Arthrobacter sp. FB24 species 649 869 species Arthrobacter sp. YC-RL1 1652545 0 1 644 species 2079227 0 Arthrobacter sp. PGP41 1 420 species 0 1806905 Arthrobacter sp. ZXY-2 1 577 species Arthrobacter sp. PAMC 25486 1494608 0 1 727 species Arthrobacter sp. ERGS1:01 1704044 0 1 1 Arthrobacter sp. YN 2020486 0 species 690 species 878 1 Arthrobacter crystallopoietes 37928 0 1 Arthrobacter alpinus 0 656366 species 1017 1 2785 genus Rothia 32207 6 0 3 1 Rothia dentocariosa 2047 0 species 445 Rothia mucilaginosa 43675 0 1 2334 species 0 2078575 1 300 genus 0 1618207 Arthrobacter sp. IHBB 11108 1 300 species 1 1874 genus Kocuria 25 57493 0 4 0 72000 Kocuria rhizophila 1 541 species 446860 0 Kocuria flava 1 713 species species 595 1 Kocuria palustris 71999 0 family 1962 1 7 145357 5 0 Dermacoccaceae 2 Dermacoccus 9 57495 0 genus 1 682 Dermacoccus nishinomiyaensis 0 1274 1 673 species 0 57499 9 Kytococcus 2 527 1 genus 1276 0 Kytococcus sedentarius 1 518 species 2 2 745364 0 Luteipulveratus genus 748 1 Luteipulveratus mongoliensis 571913 0 1 746 species 3 Brevibacteriaceae 3 85019 0 family 1 1108 1 1105 genus Brevibacterium 49 1696 0 2 1 Brevibacterium linens 0 1703 species 1056 family 1 175 3 Jonesiaceae 0 2 85022 Jonesia 0 8 43673 2 1 173 genus Jonesia denitrificans 43674 0 1 165 species 1 3646 family Promicromonosporaceae 31 85017 0 9 780 1 genus 0 186188 13 Xylanimonas 2 species 767 1 Xylanimonas cellulosilytica 0 186189 1 1353 genus Isoptericola 0 22 254250 3 Isoptericola variabilis 139208 0 1 670 species 661 species 372663 0 Isoptericola dokdonensis 1 genus 1482 1 3 157920 36 0 Cellulosimicrobium 678 species Cellulosimicrobium cellulans 1710 0 1 1 0 2624466 no rank 768 1 Cellulosimicrobium sp. TH-20 1980001 0 species 768 1 2552 family Intrasporangiaceae 85021 14 0 9 467 1 genus 53457 8 0 Janibacter 2 species 459 1 Janibacter indicus 857417 0 2 0 53357 4 Intrasporangium genus 467 1 species 463 1 Intrasporangium calvum 0 53358 2 4 265976 0 Serinicoccus genus 715 1 species 711 1 Serinicoccus sp. JLT9 0 1758689 2 0 267408 23 Arsenicicoccus genus 889 1 866 no rank 2663846 0 1 species 866 1 Arsenicicoccus sp. oral taxon 190 1658671 0 order 28797 1 42 103 85010 0 Pseudonocardiales 28694 1 family 0 412 2070 Pseudonocardiaceae 41 genus 1346 1 2 17 43356 0 Kutzneria 43357 0 Kutzneria albida 1 1329 species 5412 1 genus 0 117 1847 Pseudonocardia 8 6 0 2619320 no rank 4279 1 0 1096856 Pseudonocardia sp. EC080619-01 species 648 Pseudonocardia sp. HH130630-07 0 1690815 1 779 species 854 species 0 445576 Pseudonocardia sp. AL041005-10 1 757 species Pseudonocardia sp. HH130629-09 1641402 0 1 species 585 1 1096868 0 Pseudonocardia sp. EC080625-04 656 species 0 1688404 Pseudonocardia sp. EC080610-09 1 0 240495 Pseudonocardia dioxanivorans 1 1016 species 2896 1 genus 0 40566 57 Actinosynnema 3 species 1433 1 40567 0 Actinosynnema mirum 42197 0 Actinosynnema pretiosum 1 1406 species 1190 1 genus 0 165301 3 Lentzea 2 1187 species Lentzea guizhouensis 0 1586287 1 1 1069 genus Saccharopolyspora 5 1835 0 2 1 Saccharopolyspora erythraea 1836 0 species 1064 genus 1 3775 6 Actinoalloteichus 0 73 65496 species 670 1 Actinoalloteichus hymeniacidonis 0 340345 1 1470176 0 Actinoalloteichus hoggarensis species 801 1 0 1612552 Actinoalloteichus sp. ADI127-7 species 741 2 2644606 0 no rank 1490 722 species 0 1612551 Actinoalloteichus sp. GBA129-24 1 Actinoalloteichus sp. AHMU CJ021 2072503 0 1 768 species genus 1 1155 2 Kibdelosporangium 0 2029 23 1132 species Kibdelosporangium phytohabitans 860235 0 1 7949 1 genus 0 1813 134 Amycolatopsis 7 Amycolatopsis japonica 0 208439 1 1052 species 33910 0 Amycolatopsis mediterranei 1 1538 species 1 1814 0 Amycolatopsis methanolica species 1063 species 1932 1 Amycolatopsis orientalis 0 31958 2230 no rank 2618356 0 2 1036 species 1911175 0 Amycolatopsis sp. BJA-103 1 1 Amycolatopsis sp. AA4 0 1896961 species 1194 1 431 genus Saccharomonospora 0 1851 2 2 1 Saccharomonospora viridis 1852 0 species 429 2 0 4 674734 Alloactinosynnema genus 977 1 973 no rank 0 2636053 1 973 species Alloactinosynnema sp. L-07 1653480 0 1 142577 4 0 Prauserella 2 797 1 genus 1 530584 0 Prauserella marina species 793 0 5 2071 Saccharothrix 2 1285 1 genus species 1280 1 103731 0 Saccharothrix espanaensis order 1 17936 34 Propionibacteriales 0 85009 91 family 1 11832 20 Propionibacteriaceae 0 31957 116 Propionibacterium 0 1743 53 3 1 1746 genus Propionibacterium freudenreichii 1744 0 1 1408 species no rank 285 1 2608905 0 species 285 1 671223 0 Propionibacterium sp. oral taxon 193 840 genus 2801844 0 1 840 species Pseudopropionibacterium propionicum 0 1750 1 1 3659 genus Tessaracoccus 0 72763 46 5 1 1332264 0 Tessaracoccus aquimaris species 1157 945 species 0 399497 Tessaracoccus flavescens 1 Tessaracoccus flavus 1610493 0 1 772 species 2635419 0 1 739 no rank 1909732 0 Tessaracoccus sp. T2.5-30 1 739 species Acidipropionibacterium 0 1912215 5 2 1 1313 genus 0 1748 Acidipropionibacterium acidipropionici 1 1308 species genus 1850 1 4 0 15 1912216 Cutibacterium 1 1747 0 Cutibacterium acnes species 500 species 851 1 0 33010 Cutibacterium avidum species 484 1 0 33011 Cutibacterium granulosum 2 10 29404 0 Microlunatus genus 765 1 755 species 29405 0 Microlunatus phosphovorus 1 2 Propionimicrobium 0 203133 3 genus 1 1543 no rank 1540 1 0 2633994 Propionimicrobium sp. Marseille-P3275 1871034 0 1 1540 species 6013 1 family 127 85015 0 Nocardioidaceae 13 4 0 1839 56 Nocardioides genus 2368 1 species 641 1 0 2045452 Nocardioides sp. 78 Nocardioides dokdonensis 0 450734 1 675 species 2615069 0 1 996 no rank species 996 1 Nocardioides sp. JS614 196162 0 2 Kribbella 182639 13 0 genus 1 972 1 0 182640 Kribbella flavida species 959 2 Aeromicrobium 22 2040 0 genus 1 716 species 694 1 Aeromicrobium erythreum 2041 0 2 Pimelobacter 0 2044 5 genus 1 1060 1055 species 0 2045 Pimelobacter simplex 1 2 Micropruina 29 116071 0 genus 1 770 0 75385 Micropruina glycogenica 1 741 species order 222 3 1643683 0 Acidothermaceae 85032 1 0 3 1 222 family genus 221 1 2 0 28048 3 Acidothermus species 218 1 28049 0 Acidothermus cellulolyticus 8894 1 order 0 85012 42 Streptosporangiales 16 family 1 3623 7 Nocardiopsaceae 0 83676 52 2942 1 genus 41 2013 0 Nocardiopsis 4 280236 0 Nocardiopsis gilva 1 884 species species 1247 1 2014 0 Nocardiopsis dassonvillei 770 species Nocardiopsis alba 0 53437 1 Thermobifida 83677 5 0 2 1 629 genus 2021 0 Thermobifida fusca 1 624 species 1313 1 family 2012 21 0 Thermomonosporaceae 3 2019 18 0 Thermomonospora 2 1292 1 genus 1 Thermomonospora curvata 0 2020 species 1274 Streptosporangiaceae 45 2004 0 5 1 3916 family genus 1 2372 2 Nonomuraea 0 83681 20 1 0 2593643 no rank 2352 1909395 0 Nonomuraea sp. ATCC 55076 1 2352 species Streptosporangium 17 2000 0 2 1 1499 genus 0 2001 Streptosporangium roseum 1 1482 species 1 157264 order Bifidobacteriales 143 85004 0 27 family 157121 1 26 3078 31953 0 Bifidobacteriaceae 2 Gardnerella 2701 2 0 genus 1 671 2702 0 Gardnerella vaginalis 1 669 species 1 810 genus Parascardovia 0 1 196082 2 species 809 1 0 78258 Parascardovia denticolens genus 152174 1 19 0 1678 522 Bifidobacterium species 466 1 1687 0 Bifidobacterium coryneforme 1953 species 0 158787 Bifidobacterium scardovii 1 Bifidobacterium asteroides 1684 0 1 635 species 1685 0 Bifidobacterium breve 1 12249 species 0 1680 Bifidobacterium adolescentis 1 69972 species 0 1686 2679 Bifidobacterium catenulatum 2 6998 1 species 4319 subspecies Bifidobacterium kashiwanohense 630129 0 1 1 Bifidobacterium actinocoloniiforme 0 638619 species 535 1683 0 Bifidobacterium angulatum 1 2250 species species 8830 1 Bifidobacterium pseudocatenulatum 28026 0 1 0 28025 Bifidobacterium animalis species 1489 1691 0 Bifidobacterium indicum 1 422 species 16011 species 0 1681 Bifidobacterium bifidum 1 species 1711 1 0 33905 Bifidobacterium thermophilum species 24219 1 216816 0 Bifidobacterium longum 1 Bifidobacterium pseudolongum 1694 0 species 1486 1689 0 Bifidobacterium dentium 1 1133 species species 1293 1 0 35760 Bifidobacterium choerinum Scardovia 0 196081 1 2 1 388 genus species 387 1 78259 0 Scardovia inopinata order 1 85858 163 Corynebacteriales 620 85007 0 9 Gordoniaceae 0 14 85026 family 1 3976 3962 1 genus 2053 144 0 Gordonia 8 503 species Gordonia phthalatica 1136941 0 1 2054 0 Gordonia bronchialis 1 495 species 1 0 2055 Gordonia terrae species 605 592 species 1004901 0 Gordonia iterans 1 no rank 1156 2 2657482 0 Gordonia sp. KTR9 0 337191 1 490 species 666 species 2059875 0 Gordonia sp. YC-JH1 1 467 species 0 84595 Gordonia polyisoprenivorans 1 family 1351 1 4 85028 4 0 Tsukamurellaceae genus 1 1347 3 Tsukamurella 2060 45 0 Tsukamurella paurometabola 2061 0 1 441 species species 861 1 Tsukamurella tyrosinosolvens 57704 0 3 Segniliparaceae 316606 2 0 family 1 493 1 491 genus Segniliparus 0 12 286801 2 286802 0 Segniliparus rotundus 1 479 species family 21030 1 31 134 85025 0 Nocardiaceae 121 1817 0 Nocardia 7 7708 1 genus 1 Nocardia nova 37330 0 species 887 0 37329 Nocardia farcinica 1 1214 species 1670 species 0 135487 Nocardia cyriacigeorgica 1 species 938 1 37332 0 Nocardia seriolae species 1102 1 0 455432 Nocardia terpenica 1 37326 0 Nocardia brasiliensis species 1776 Rhodococcus 0 1827 503 23 1 13188 genus 1 1833 0 Rhodococcus erythropolis species 614 0 192944 12 5512 no rank 1 Rhodococcus sp. MTM3W5.2 1805827 0 species 740 1 Rhodococcus sp. B7740 1564114 0 species 506 1 Rhodococcus sp. 2G 1570939 0 species 454 1 0 1033922 Rhodococcus sp. WB1 species 762 366 species Rhodococcus sp. 008 0 1723645 1 Rhodococcus sp. WMMA185 679318 0 1 213 species species 460 1 1653479 0 Rhodococcus sp. PBTS 2 1 Rhodococcus sp. PBTS 1 0 1653478 species 459 1 0 935199 Rhodococcus sp. p52 species 491 1 0 1807790 Rhodococcus sp. BH4 species 270 species 395 1 1045808 0 Rhodococcus sp. YL-1 396 species 0 1727214 Rhodococcus sp. H-CA8f 1 380 species Rhodococcus qingshengii 334542 0 1 1 1828 0 Rhodococcus fascians species 471 0 1830 Rhodococcus ruber 1 850 species 191292 0 Rhodococcus aetherivorans 1 775 species 1 0 43767 Rhodococcus hoagii species 655 1 Rhodococcus pyridinivorans 103816 0 species 611 species 1594 1 0 37919 Rhodococcus opacus 1 Rhodococcus jostii 0 132919 species 640 species 583 1 Rhodococcus rhodochrous 1829 0 1216 1 family 0 5 85029 Dietziaceae 4 1 1211 genus Dietzia 63 37914 0 3 Dietzia timorensis 0 499555 1 569 species no rank 579 1 2617939 0 1 712270 0 Dietzia sp. oral taxon 368 species 579 family 1 30019 57 Mycobacteriaceae 0 1762 106 genus 983 2 0 1073531 422 species Mycobacterium terrae 0 1788 1 Mycobacterium sinense 0 875328 1 561 species 2271 genus 670516 0 5 species 338 1 Mycobacterium stephanolepidis 1520670 0 261 species 0 1774 Mycobacterium chelonae 1 1 1578165 0 Mycobacterium saopaulense species 397 1 Mycobacterium abscessus 0 36809 species 893 382 species 0 83262 Mycobacterium immunogenum 1 2 Hoyosella 0 2 697025 genus 1 302 1 0 639313 Hoyosella subflava species 300 8982 genus 1866885 0 13 751 species 1797 0 Mycobacterium thermoresistibile 1 612 species Mycobacterium rhodesiae 36814 0 1 1 Mycobacterium litorale 0 758802 species 588 species 751 1 Mycobacterium goodii 0 134601 species 539 1 Mycobacterium fortuitum 1766 0 725 species Mycobacterium aurum 0 1791 1 1 1795 0 Mycobacterium neoaurum species 637 1771 0 Mycobacterium phlei 1 760 species 630 species 1800 0 Mycobacterium chubuense 1 1 0 110539 Mycobacterium vanbaalenii species 625 Mycobacterium vaccae 1810 0 1 648 species 795 species Mycobacterium gilvum 1804 0 1 0 1772 Mycobacterium smegmatis 1 921 species 34 Mycobacterium 0 1763 1318 genus 1 17375 8 120793 0 species group 3332 species 1203 1 1764 0 Mycobacterium avium 1 0 339268 Mycobacterium colombiense species 634 118 species 1138383 0 Mycobacterium paraintracellulare 1 1 0 701042 Mycobacterium marseillense species 410 species 1 967 4 Mycobacterium intracellulare 0 194 1767 1 222805 0 Mycobacterium chimaera subspecies 449 0 1203599 Mycobacterium yongonense 1 194 subspecies subspecies 130 1 0 35617 Mycobacterium indicus pranii 538 species group 0 2249310 1 538 species 0 722731 Mycobacterium shigaense 1 333 species 0 29311 Mycobacterium haemophilum 1 1 Mycobacterium dioxanotrophicus 0 482462 species 764 species 453 1 0 261524 Mycobacterium liflandii no rank 7474 13 0 2642494 642 species 1920667 0 Mycobacterium sp. WY10 1 1 Mycobacterium sp. JS623 212767 0 species 612 595 species Mycobacterium sp. JLS 164757 0 1 Mycobacterium sp. QIA-37 0 1561223 1 334 species species 759 1 Mycobacterium sp. EPa45 1545728 0 0 164756 Mycobacterium sp. MCS 1 555 species Mycobacterium sp. YC-RL4 0 1682113 1 649 species 569 species Mycobacterium sp. KMS 189918 0 1 555 species Mycobacterium sp. VKM Ac-1817D 0 1273687 1 Mycobacterium sp. NRRL B-3805 1570328 0 1 637 species 829 species Mycobacterium sp. djl-10 1879023 0 1 species 581 1 Mycobacterium sp. PYR15 2051552 0 1 1168287 0 Mycobacterium sp. MOTT36Y species 157 species 102 1 0 1769 Mycobacterium leprae 0 77643 4 1266 species group species 1 861 3 Mycobacterium tuberculosis 1773 315 0 1 Mycobacterium bovis 0 1765 biotype 274 0 33894 Mycobacterium africanum 1 272 biotype species 405 1 0 78331 Mycobacterium canettii 1768 0 Mycobacterium kansasii 1 632 species 1 1809 0 Mycobacterium ulcerans species 591 species 572 1 Mycobacterium marinum 0 1781 2 0 697024 no rank 332 1 332 genus Lawsonella 0 2 1847725 2 species 330 1 1528099 0 Lawsonella clevelandensis 26821 1 family 0 251 1653 Corynebacteriaceae 52 26570 1 genus 0 1716 771 Corynebacterium 51 405 species Corynebacterium testudinoris 0 136857 1 species 430 1 Corynebacterium stationis 0 1705 1 Corynebacterium terpenotabidum 89154 0 species 390 Corynebacterium glyciniphilum 0 1404244 1 507 species 1 160386 0 Corynebacterium casei species 268 1 146827 0 Corynebacterium simulans species 741 1 0 191493 Corynebacterium sphenisci species 760 320 species 1697 0 Corynebacterium ammoniagenes 1 689 species Corynebacterium imitans 0 156978 1 1 0 203263 Corynebacterium aquilae species 495 0 258224 Corynebacterium resistens 1 362 species species 698 1 Corynebacterium variabile 0 1727 species 591 1 Corynebacterium humireducens 1223514 0 1 0 161896 Corynebacterium camporealensis species 489 species 872 1 Corynebacterium frankenforstense 0 1230998 250 species 0 571915 Corynebacterium mustelae 1 1 Corynebacterium halotolerans 0 225326 species 707 406 species Corynebacterium deserti 1408191 0 1 433 species Corynebacterium glaucum 0 187491 1 1 Corynebacterium crudilactis 0 1652495 species 225 Corynebacterium uterequi 1072256 0 1 507 species 831 species 0 1718 Corynebacterium glutamicum 1 1 Corynebacterium ulcerans 65058 0 species 536 0 2624378 2 832 no rank 1 Corynebacterium sp. NML98-0116 702967 0 species 453 1 1487956 0 Corynebacterium sp. ATCC 6931 species 379 species 832 1 0 108486 Corynebacterium falsenii 1 161879 0 Corynebacterium kroppenstedtii species 199 0 161899 Corynebacterium singulare 1 373 species 499 species 0 401472 Corynebacterium ureicelerivorans 1 1 Corynebacterium callunae 0 1721 species 373 1 Corynebacterium cystitidis 35757 0 species 337 species 353 1 28028 0 Corynebacterium flavescens 518 species Corynebacterium lactis 1231000 0 1 43770 0 Corynebacterium striatum 1 1196 species 191610 0 Corynebacterium atypicum 1 422 species 304 species 1050174 0 Corynebacterium epidermidicanis 1 603 species 1121358 0 Corynebacterium doosanense 1 0 43771 Corynebacterium urealyticum 1 406 species 1 Corynebacterium aurimucosum 169292 0 species 462 species 367 1 42817 0 Corynebacterium argentoratense species 441 1 0 161895 Corynebacterium phocae 958 species Corynebacterium vitaeruminis 38305 0 1 species 1006 1 Corynebacterium jeikeium 0 38289 184 species 35755 0 Corynebacterium kutscheri 1 358 species Corynebacterium pseudotuberculosis 0 1719 1 152794 0 Corynebacterium efficiens 1 736 species 1 Corynebacterium maris 0 575200 species 472 species 304 1 0 92706 [Brevibacterium] flavum species 523 1 1717 0 Corynebacterium diphtheriae species 829 1 349751 0 Corynebacterium marinum order 1 3546 7 Frankiales 0 12 85013 1 3534 family Frankiaceae 0 74712 35 6 1 3499 genus Frankia 0 1854 60 5 298654 0 Frankia inefficax 1 1058 species Frankia casuarinae 0 106370 1 528 species species 1056 1 1859 0 Frankia alni 797 no rank 0 2632575 1 species 797 1 Frankia sp. EAN1pec 0 298653 747 no rank 1643818 0 2 genus 747 1 2 2 147067 0 Thermobispora 1 Thermobispora bispora 0 2006 species 745 Micromonosporales 0 85008 47 20 1 13562 order 163 28056 0 Micromonosporaceae 19 13515 1 family 1 0 84593 Verrucosispora genus 4 Salinispora 0 168694 58 3 1 1425 genus 601 species Salinispora arenicola 0 168697 1 species 766 1 168695 0 Salinispora tropica 51 673534 0 Plantactinospora 4 2977 1 genus 3 0 2631981 no rank 2926 964 species Plantactinospora sp. BC1 0 2108470 1 1 2024580 0 Plantactinospora sp. KBS50 species 988 species 974 1 Plantactinospora sp. BB1 0 2071627 1 3105 genus Micromonospora 1873 66 0 4 1 Verrucosispora maris 1003110 0 species 814 1 Micromonospora aurantiaca 0 47850 species 1008 1 0 2617518 no rank 1217 648999 0 Micromonospora sp. L5 1 1217 species 5841 1 genus 0 1865 122 Actinoplanes 6 1 1866 0 Actinoplanes missouriensis species 1113 196914 0 Actinoplanes friuliensis 1 1055 species 3 2626549 0 no rank 3551 1118 species 0 134676 Actinoplanes sp. SE50/110 1 1315 species 0 649831 Actinoplanes sp. N902-109 1 1 0 2033844 Actinoplanes sp. SE50 species 1118 order 1364 1 4 3 414714 0 Catenulisporales family 1361 1 3 0 16 414877 Catenulisporaceae 414878 38 0 Catenulispora 2 1345 1 genus species 1307 1 Catenulispora acidiphila 304895 0 order 12689 1 20 2037 11 0 Actinomycetales 19 Actinomycetaceae 0 2049 1916 family 1 12678 genus 1281 1 2 0 1069494 4 Trueperella 1277 species Trueperella pyogenes 1661 0 1 1 2529408 0 genus 595 Actinomyces meyeri 52773 0 1 595 species genus 1 2191 2 Mobiluncus 0 2050 64 2127 species 0 2051 Mobiluncus curtisii 1 genus 1 327 2 Arcanobacterium 0 2 28263 28264 0 Arcanobacterium haemolyticum 1 325 species genus 1 5921 9 Actinomyces 1654 118 0 no rank 2551 3 2609248 0 1 0 712122 Actinomyces sp. oral taxon 414 species 1089 0 2081702 Actinomyces sp. oral taxon 897 1 779 species species 683 1 Actinomyces sp. Chiba101 0 1851395 111015 0 Actinomyces radicidentis 1 1163 species Actinomyces oris 544580 0 1 842 species 1 1852377 0 Actinomyces pacaensis species 454 Actinomyces sp. VUL4_3 1912795 0 1 264 species 1 Actinomyces gaoshouyii 0 1960083 species 529 1 447 genus Actinotignum 1 1653174 0 2 446 species 59505 0 Actinotignum schaalii 1 1 83434 order Streptomycetales 122 85011 0 82 1 83312 family Streptomycetaceae 0 460 2062 81 4932 1 genus 2063 46 0 Kitasatospora 5 1 Kitasatospora aureofaciens 0 1894 species 1021 1 68173 0 Kitasatospora albolonga species 1048 species 1368 1 2066 0 Kitasatospora setae no rank 1449 1 2633591 0 0 2018025 Kitasatospora sp. MMS16-BH015 1 1449 species 1883 2535 0 Streptomyces 75 77920 1 genus 2477 species Streptomyces hygroscopicus 1912 0 1 0 285473 Streptomyces rubrolavendulae 1 683 species 2 629295 0 species group 1735 1 1482558 0 species subgroup 829 species 829 1 Streptomyces globisporus 1908 0 906 species subgroup 0 1482596 1 906 species 1911 0 Streptomyces griseus 1 Streptomyces violaceoruber 1935 0 1 796 species 0 1888 Streptomyces albus 1 2093 species 976 species 1916 0 Streptomyces lividans 1 species 844 1 0 1889 Streptomyces ambofaciens 1 1950 0 Streptomyces peucetius species 843 species 1040 1 Streptomyces cattleya 0 29303 Streptomyces alboflavus 0 67267 1 1093 species 547 species 1355015 0 Streptomyces pluripotens 1 1 0 68570 Streptomyces albulus species 972 Streptomyces puniciscabiei 164348 0 1 1072 species Streptomyces noursei 1971 0 1 1008 species 735 species 0 193462 Streptomyces niveus 1 54571 0 Streptomyces venezuelae 1 1581 species species 842 1 Streptomyces parvulus 146923 0 species 2930 1 Streptomyces lydicus 47763 0 species 906 1 2049881 0 Streptomyces sp. XZHG99 952 species Streptomyces formicae 0 1616117 1 2593676 0 24 22415 no rank 905 species Streptomyces sp. FR-008 0 206662 1 1495638 0 Streptomyces sp. M56 1 1324 species 1837283 0 Streptomyces sp. S8 1 631 species 1098 species 1964449 0 Streptomyces sp. 3211 1 Streptomyces sp. Tue 6075 1661694 0 1 839 species 1 0 1849967 Streptomyces sp. SAT1 species 782 1 Streptomyces sp. CFMR 7 0 1649184 species 737 species 1091 1 Streptomyces sp. CNQ-509 0 444103 1058 species Streptomyces sp. fd1-xmd 0 1812480 1 1984801 0 Streptomyces sp. CLI2509 1 913 species 1 Streptomyces sp. P3 2135430 0 species 993 1 Streptomyces sp. SirexAA-E 0 862751 species 640 1 1725411 0 Streptomyces sp. CdTB01 species 1092 973 species 0 1961713 Streptomyces sp. MOE7 1 species 876 1 Streptomyces sp. TN58 234612 0 Streptomyces sp. 769 0 1262452 1 1081 species 1 Streptomyces sp. RTd22 1841249 0 species 1181 919 species 0 465541 Streptomyces sp. Mg1 1 1239 species Streptomyces sp. CMB-StM0423 0 2059884 1 867 species 0 1561022 Streptomyces sp. CCM_MD2014 1 723 species Streptomyces sp. PAMC 26508 0 1265601 1 species 937 1 0 1972846 Streptomyces sp. Sge12 1 1751294 0 Streptomyces sp. 4F species 746 770 species Streptomyces sp. WAC00288 0 2094021 1 Streptomyces collinus 42684 0 1 901 species species 808 1 0 68192 Streptomyces cyaneogriseus 0 362257 Streptomyces vietnamensis 1 1001 species 977 species Streptomyces reticuli 0 1926 1 38300 0 Streptomyces pristinaespiralis 1 1035 species 904 species 1914 0 Streptomyces lavendulae 1 1642299 0 Streptomyces alfalfae 1 950 species 756 species Streptomyces pratensis 1169025 0 1 1783515 0 Streptomyces sp. S10(2016) 1 853 species 1 Streptomyces albireticuli 0 1940 species 1032 1090 species Streptomyces chartreusis 1969 0 1 species 1820 1 Streptomyces pactum 68249 0 1 Streptomyces glaucescens 1907 0 species 960 75293 0 Streptomyces autolyticus 1 979 species 0 68214 Streptomyces griseochromogenes 1 1049 species 1 Streptomyces violaceusniger 0 68280 species 1027 959 species Streptomyces fulvissimus 0 68202 1 1 Streptomyces avermitilis 33903 0 species 958 1 0 379067 Streptomyces bingchenggensis species 1376 species 994 1 Streptomyces malaysiensis 92644 0 species 923 1 0 553510 Streptomyces gilvosporeus species 1044 1 Streptomyces scabiei 1930 0 1915 0 Streptomyces lincolnensis 1 1000 species species 860 1 Streptomyces xinghaiensis 1038928 0 species 904 1 Streptomyces clavuligerus 1901 0 1477431 0 2 1767 species group 849 species 0 1902 Streptomyces coelicolor 1 species 918 1 Streptomyces sampsonii 42239 0 0 1437453 Streptomyces leeuwenhoekii 1 1047 species 1 Streptomyces xiamenensis 0 408015 species 871 class 1 1598 5 Thermoleophilia 0 1497346 10 4 Solirubrobacterales 0 588673 21 order 1 1588 1 1567 family Conexibacteraceae 0 320583 6 3 60 191494 0 Conexibacter 2 1561 1 genus 1 0 191495 Conexibacter woesei species 1501 Firmicutes 0 1239 134 711 1 4740643 phylum 11 Erysipelotrichia 526524 6 0 class 1 22138 1 22132 order Erysipelotrichales 0 526525 16 10 9 0 128827 96 Erysipelotrichaceae family 22116 1 1729679 10 0 Faecalibaculum 2 6474 1 genus 1 Faecalibaculum rodentium 0 1702221 species 6464 1 3115 genus Turicibacter 191303 21 0 2 no rank 3094 1 0 2638206 1 Turicibacter sp. H121 0 1712675 species 3094 9410 no rank 544447 0 1 1 0 1834207 Erysipelotrichaceae bacterium I46 species 9410 genus 1 3021 3 Erysipelothrix 0 1647 17 species 1520 1 1514105 0 Erysipelothrix larvae 1 0 1648 Erysipelothrix rhusiopathiae species 1484 class 1 451422 428 Bacilli 336 91061 0 250435 1 order 1385 570 0 Bacillales 262 9 0 539002 no rank 3633 no rank 2507 7 0 539742 1 2507 genus Exiguobacterium 0 69 33986 7 465 species 332410 0 Exiguobacterium sibiricum 1 species 568 1 Exiguobacterium antarcticum 0 132920 2644629 0 4 1405 no rank species 332 1 Exiguobacterium sp. MH3 0 1399115 332 species 1849031 0 Exiguobacterium sp. U13-1 1 1224749 0 Exiguobacterium sp. ZWU0009 1 340 species 1 Exiguobacterium sp. AT1b 360911 0 species 401 2 0 539738 no rank 1126 2 Gemella 1378 3 0 genus 1 1126 0 2624949 1 1123 no rank species 1123 1 1785995 0 Gemella sp. oral taxon 928 Bacillaceae 186817 373 0 116 1 116149 family Anoxybacillus 150247 9 0 6 1 4406 genus no rank 2084 2 0 2639704 987 species 0 1490057 Anoxybacillus sp. B7M1 1 1 1490052 0 Anoxybacillus sp. B2M1 species 1097 1 Anoxybacillus amylolyticus 0 294699 species 598 643 species 198467 0 Anoxybacillus gonensis 1 species 1072 1 33934 0 Anoxybacillus flavithermus 888 genus 0 1055323 1 species 888 1 33936 0 Aeribacillus pallidus 1 459532 0 genus 1021 1021 species 0 586416 Terribacillus aidingensis 1 2 4 175304 0 Lentibacillus genus 793 1 species 789 1 Lentibacillus amyloliquefaciens 1472767 0 Lysinibacillus 84 400634 0 5 1 5335 genus species 806 1 Lysinibacillus fusiformis 28031 0 1 2636778 0 no rank 1028 1 Lysinibacillus sp. YS11 2072025 0 species 1028 1 0 1145276 Lysinibacillus varians species 914 2503 species 1421 0 Lysinibacillus sphaericus 1 5 2675234 0 genus 4550 1 199441 0 Bacillus krulwichiae species 1075 0 300825 Bacillus lehensis 1 891 species species 1144 1 Bacillus clausii 0 79880 79885 0 Bacillus pseudofirmus 1 904 species species 536 1 Bacillus halodurans 86665 0 0 70 84406 Virgibacillus 7 5073 1 genus 816 species 0 1473 Virgibacillus pantothenticus 1 1 1482 0 Virgibacillus halodenitrificans species 964 Virgibacillus necropolis 163877 0 1 748 species Virgibacillus phasianinus 0 2017483 1 582 species 2 0 2620237 no rank 1893 Virgibacillus sp. 6R 0 1911587 1 942 species 951 species Virgibacillus sp. SK37 0 403957 1 0 182709 1 1638 genus species 1638 1 Oceanobacillus iheyensis 0 182710 genus 1383 1 29331 0 species 1383 1 0 1449 Amphibacillus xylanus 3 0 45667 9 Halobacillus genus 1368 1 0 1570 Halobacillus halophilus 1 777 species species 582 1 Halobacillus mangrovi 402384 0 genus 1 722 2 Parageobacillus 0 1906945 4 species 718 1 0 1426 Parageobacillus thermoglucosidasius 1 0 351195 genus 1093 species 1093 1 0 1230341 Salimicrobium jeotgali genus 2218 2 0 2675230 species 869 1 859143 0 Bacillus kochii 1349 species Bacillus oceanisediminis 0 665099 1 1927 1 genus 5 1329200 0 Fictibacillus 3 species 987 1 0 1221500 Fictibacillus phosphorivorans 1 Fictibacillus arsenicus 0 255247 species 935 genus 10082 1 15 0 616 129337 Geobacillus 0 1505648 4 2855 species group 726 species Geobacillus thermocatenulatus 0 33938 1 species 304 1 Geobacillus kaustophilus 1462 0 1 Geobacillus thermoleovorans 0 33941 species 1311 species 514 1 Geobacillus lituanicus 0 169283 1199 species 1422 0 Geobacillus stearothermophilus 1 1921421 0 Geobacillus genomosp. 3 1 715 species species 775 1 0 129338 Geobacillus subterraneus species 764 1 33940 0 Geobacillus thermodenitrificans 6 2642459 0 no rank 3158 species 314 1 Geobacillus sp. GHH01 1233873 0 818 species Geobacillus sp. WCH70 471223 0 1 769 species Geobacillus sp. Y4.1MC1 581103 0 1 376 species 0 544556 Geobacillus sp. Y412MC61 1 species 531 1 0 691437 Geobacillus sp. C56-T3 1 Geobacillus sp. Y412MC52 0 550542 species 350 genus 71434 1 58 3378 1386 0 Bacillus 1 Bacillus xiamenensis 0 1178537 species 733 1 Bacillus megaterium 1404 0 species 2194 1029 species Bacillus cohnii 33932 0 1 species 878 1 0 1547283 Bacillus weihaiensis Bacillus endophyticus 0 135735 1 1376 species species 726 1 632773 0 Bacillus beveridgei 715 species Bacillus aryabhattai 0 412384 1 1 0 1471 Bacillus methanolicus species 769 1664069 0 Bacillus glycinifermentans 1 1347 species Bacillus horikoshii 0 79883 1 729 species 1 0 1792192 species group 730 species 730 1 Bacillus altitudinis 0 293387 species 1205 1 Bacillus infantis 324767 0 862 species 1413 0 Bacillus cellulosilyticus 1 632 species 0 1479 Bacillus smithii 1 1 0 79881 Bacillus gibsonii species 147 Bacillus safensis 0 561879 1 1280 species species 3026 1 0 1408 Bacillus pumilus species group 24390 10 86661 0 3 0 2750818 no rank 3018 species 947 1 Bacillus sp. HBCD-sjtu 2053832 0 Bacillus sp. ABP14 0 1892404 1 899 species 1172 species Bacillus sp. FDAARGOS_235 0 1839798 1 725 species 658666 0 Bacillus bombysepticus 1 782 species 155322 0 Bacillus toyonensis 1 1 Bacillus cytotoxicus 580165 0 species 963 species 7387 1 1428 0 Bacillus thuringiensis species 726 1 Bacillus anthracis 1392 0 7698 species Bacillus cereus 1396 0 1 1 Bacillus mycoides 1405 0 species 3091 12836 species group 653685 0 9 131 species 72361 0 Bacillus vallismortis 1 species 4297 1 1423 0 Bacillus subtilis 1 Bacillus licheniformis 1402 0 species 1057 1 1648923 0 Bacillus paralicheniformis species 1368 3 0 1938374 species subgroup 4055 1 Bacillus amyloliquefaciens 1390 0 species 1937 1 492670 0 Bacillus velezensis species 1540 0 659243 Bacillus siamensis 1 578 species species 948 1 0 119858 Bacillus sonorensis 1 1452 0 Bacillus atrophaeus species 980 Bacillus coagulans 1398 0 1 2179 species 185979 0 19 9335 no rank 629 species 1774743 0 Bacillus sp. SDLI1 1 Bacillus sp. 275 1941347 0 1 470 species Bacillus sp. BH072 1570330 0 1 191 species 553 species Bacillus sp. Pc3 1446792 0 1 Bacillus sp. JS 0 1127744 1 414 species species 502 1 1837130 0 Bacillus sp. FJAT-14266 species 731 1 2026248 0 Bacillus sp. 1s-1 species 624 1 Bacillus sp. WP8 756828 0 1 0 2049935 Bacillus sp. Lzh-5 species 129 species 383 1 2009331 0 Bacillus sp. MD-5 191 species 1409 0 Bacillus sp. (in: Bacteria) 1 1 1628753 0 Bacillus sp. LM 4-2 species 195 1 Bacillus sp. 1NLA3E 0 666686 species 845 644 species Bacillus sp. OxB-1 98228 0 1 1 0 563169 Bacillus sp. SJ-10 species 531 species 735 1 0 1827146 Bacillus sp. IHB B 7164 1 Bacillus sp. YP1 1574141 0 species 166 1 0 1856406 Bacillus sp. H15-1 species 731 671 species Bacillus sp. X1(2014) 0 1565991 1 938 species 86664 0 Bacillus flexus 1 2 0 2675229 genus 1845 0 264697 Bacillus muralis 1 629 species species 1216 1 Bacillus simplex 1478 0 9 Alicyclobacillaceae 0 186823 66 family 1 6058 genus 1 1322 3 Kyrpidia 0 1129704 42 664 species Kyrpidia tusciae 0 33943 1 species 616 1 2055160 0 Kyrpidia sp. EA-1 1 1578 genus Alicyclobacillus 7 29330 0 2 1571 species Alicyclobacillus acidocaldarius 405212 0 1 3 Tumebacillus 0 34 432330 genus 1 3092 1 1214604 0 Tumebacillus algifaecis species 1020 Tumebacillus avium 1903704 0 1 2038 species Staphylococcaceae 90964 2045 0 40 1 36713 family 1 2005363 0 genus 557 Auricoccus indicus 1849491 0 1 557 species 30832 1 genus 675 1279 0 Staphylococcus 33 species 1130 1 Staphylococcus hominis 1290 0 1 Staphylococcus felis 46127 0 species 603 1 70258 0 Staphylococcus piscifermentans species 545 772 species Staphylococcus carnosus 1281 0 1 Staphylococcus simulans 1286 0 1 835 species species 591 1 Staphylococcus hyicus 1284 0 species 1055 1 Staphylococcus simiae 308354 0 species 757 1 0 1292 Staphylococcus warneri 877 species 0 985002 Staphylococcus argenteus 1 1 Staphylococcus schleiferi 0 1295 species 942 1673 species Staphylococcus xylosus 0 1288 1 28035 0 Staphylococcus lugdunensis 1 663 species species 1069 1 Staphylococcus sciuri 0 1296 species 935 1 Staphylococcus capitis 0 29388 1 214473 0 Staphylococcus nepalensis species 572 1 Staphylococcus pettenkoferi 0 170573 species 477 species 568 1 Staphylococcus muscae 0 1294 species 697 1 29385 0 Staphylococcus saprophyticus 1 0 1283 Staphylococcus haemolyticus species 842 506 species 985762 0 Staphylococcus agnetis 1 Staphylococcus aureus 0 1280 1 3302 species 1 70255 0 Staphylococcus condimenti species 749 1 0 643214 Staphylococcus stepanovicii species 829 1 0 29382 Staphylococcus cohnii species 807 species 1778 1 Staphylococcus pasteuri 0 45972 Staphylococcus equorum 246432 0 1 972 species species 774 1 Staphylococcus succinus 61015 0 91994 0 1 802 no rank 0 1715860 Staphylococcus sp. AntiMn-1 1 802 species Staphylococcus pseudintermedius 283734 0 1 1472 species 0 155085 Staphylococcus lutrae 1 478 species 1330 species 1282 0 Staphylococcus epidermidis 1 755 species Staphylococcus kloosii 29384 0 1 4 27 69965 0 Macrococcus genus 2510 1 1855823 0 Macrococcus canis 1 748 species 1 0 69966 Macrococcus caseolyticus species 996 1 0 2619255 no rank 739 species 739 1 0 1898474 Macrococcus sp. IME1552 0 45669 1 769 genus species 769 1 Salinicoccus halodurans 407035 0 0 186818 100 Planococcaceae 26 16562 1 family 1 7427 genus Planococcus 0 1372 96 12 1 1598147 0 Planococcus faecalis species 520 1 Planococcus kocurii 0 1374 species 554 species 458 1 161360 0 Planococcus antarcticus 1 1302659 0 Planococcus sp. L10.15 species 771 species 1456 1 0 192421 Planococcus maritimus 1174 no rank 0 2662419 2 species 606 1 1526927 0 Planococcus sp. PAMC 21323 1 2058136 0 Planococcus sp. MB-3u-03 species 568 species 696 1 Planococcus donghaensis 414778 0 1 Planococcus rifietoensis 200991 0 species 571 1 Planococcus plakortidis 0 1038856 species 605 species 526 1 Planococcus halocryophilus 0 1215089 Solibacillus 0 2 648800 3 1 1899 genus species 1049 1 0 76853 Solibacillus silvestris 1 2637870 0 no rank 848 1 2048654 0 Solibacillus sp. R5-41 species 848 1 648802 0 genus 678 species 678 1 Rummeliibacillus stabekisii 0 241244 5 Sporosarcina 0 20 1569 genus 1 4462 Sporosarcina psychrophila 0 1476 1 644 species 1 Sporosarcina ureae 1571 0 species 1950 no rank 1848 2 2647733 0 967 species 1930764 0 Sporosarcina sp. P33 1 881 species 1930546 0 Sporosarcina sp. P37 1 genus 1019 1 2 1 1649 0 Kurthia no rank 1018 1 0 2644826 1750719 0 Kurthia sp. 11kri321 1 1018 species 0 157226 2 Jeotgalibacillus 2 977 1 genus 975 species 1508404 0 Jeotgalibacillus malaysiensis 1 9 Listeriaceae 18 186820 0 family 1 6585 1 787 genus Brochothrix 2755 1 0 2 1 2756 0 Brochothrix thermosphacta species 786 1 5780 genus Listeria 1637 58 0 6 species 758 1 0 1643 Listeria welshimeri 1 Listeria ivanovii 1638 0 species 1284 species 2346 1 1639 0 Listeria monocytogenes Listeria innocua 1642 0 1 546 species 1 Listeria seeligeri 1640 0 species 788 4 Thermoactinomycetaceae 186824 4 0 family 1 854 genus 38 1 0 292635 Laceyella genus 1 812 2 Novibacillus 1677050 19 0 1 0 1471761 Novibacillus thermophilus species 793 0 248 186822 Paenibacillaceae 46 62457 1 family genus 1 3299 4 Brevibacillus 0 55080 53 750 species 54913 0 Brevibacillus formosus 1 1 1393 0 Brevibacillus brevis species 1243 0 1465 Brevibacillus laterosporus 1 1253 species 2 Thermobacillus 0 8 76632 genus 1 2679 2671 species 377615 0 Thermobacillus composti 1 1756 no rank 0 85151 3 55079 2 0 Aneurinibacillus 3 1756 1 genus no rank 856 1 0 2642329 species 856 1 0 1450761 Aneurinibacillus sp. XH2 898 species Aneurinibacillus soli 1500254 0 1 54475 1 genus 502 44249 0 Paenibacillus 36 59893 0 Paenibacillus peoriae 1 692 species species 1019 1 Paenibacillus terrae 159743 0 Paenibacillus larvae 1464 0 1 1223 species species 1518 1 Paenibacillus bovis 0 1616788 2166 species Paenibacillus stellifer 0 169760 1 Paenibacillus naphthalenovorans 162209 0 1 1231 species 1474 species Paenibacillus ihbetae 0 1870820 1 1 0 2044880 species group 1821 1 483937 0 Paenibacillus riograndensis species 1821 61624 0 Paenibacillus mucilaginosus 1 3061 species species 3003 1 44251 0 Paenibacillus durus 1039 species 528191 0 Paenibacillus xylanexedens 1 3244 species 0 1406 Paenibacillus polymyxa 1 Paenibacillus borealis 160799 0 1 1812 species 1637 species Paenibacillus sabinae 365617 0 1 species 2010 1 Paenibacillus donghaensis 414771 0 1067 species Paenibacillus swuensis 1178515 0 1 18290 no rank 185978 0 13 1870819 0 Paenibacillus sp. BIHB4019 1 1266 species species 1775 1 0 1536773 Paenibacillus sp. FSL R7-0331 Paenibacillus sp. JDR-2 0 324057 1 1469 species 1536772 0 Paenibacillus sp. FSL R7-0273 1 2153 species species 845 1 0 1536770 Paenibacillus sp. FSL R5-0345 1331 species 0 1695218 Paenibacillus sp. 32O-W 1 1 Paenibacillus sp. lzh-N1 2069255 0 species 971 species 950 1 Paenibacillus sp. IHBB 10380 0 1566358 856 species Paenibacillus sp. FSL H7-0737 1536775 0 1 species 1898 1 1536769 0 Paenibacillus sp. FSL P4-0081 1 Paenibacillus sp. Y412MC10 481743 0 species 1352 1596 species 0 1536774 Paenibacillus sp. FSL H7-0357 1 1 Paenibacillus sp. FSL R5-0912 1536771 0 species 1828 1830 species 1126833 0 Paenibacillus beijingensis 1 species 893 1 0 189426 Paenibacillus odorifer 0 172713 Paenibacillus kribbensis 1 1110 species species 797 1 0 1763538 Paenibacillus crassostreae 1739 species Paenibacillus graminis 189425 0 1 1462996 0 Paenibacillus yonginensis 1 1297 species family 1 854 2 Sporolactobacillaceae 0 186821 1 663587 0 1 853 no rank 1 [Bacillus] selenitireducens 0 85683 species 853 165 0 2636 186826 Lactobacillales order 200651 1 17 Leuconostocaceae 81850 1 0 family 1 6152 9 Leuconostoc 1243 43 0 genus 1 3595 1 Leuconostoc mesenteroides 1245 0 species 1015 1 Leuconostoc kimchii 0 136609 species 434 Leuconostoc lactis 0 1246 1 190 species 519 species 0 1244 Leuconostoc gelidum 1 1 1252 0 Leuconostoc carnosum species 273 576 species Leuconostoc citreum 0 33964 1 223 species Leuconostoc garlicum 0 255248 1 2685106 0 1 322 no rank 1 979982 0 Leuconostoc sp. C2 species 322 genus 2222 1 6 24 46255 0 Weissella 254 species Weissella ceti 759620 0 1 species 377 1 0 1631871 Weissella jogaejeotgali Weissella cibaria 137591 0 1 737 species species 390 1 0 1249 Weissella paramesenteroides 1 Weissella koreensis 0 165096 species 440 genus 334 1 0 46254 1 0 1247 Oenococcus oeni species 334 family 103858 1 49 1300 1989 0 Streptococcaceae genus 4742 1 5 0 1357 2 Lactococcus 1 1366 0 Lactococcus raffinolactis species 506 2883 species Lactococcus lactis 0 1358 1 536 species 0 1364 Lactococcus piscium 1 815 species Lactococcus garvieae 0 1363 1 genus 97127 1 43 3624 1301 0 Streptococcus species 1043 1 0 1348 Streptococcus parauberis 0 1326 Streptococcus acidominimus 1 1511 species species 4920 1 Streptococcus salivarius 1304 0 568 species 0 45634 Streptococcus cristatus 1 1 Streptococcus mutans 0 1309 species 801 Streptococcus merionis 400065 0 1 408 species 315405 0 Streptococcus gallolyticus 1 1670 species 10864 species 0 1307 Streptococcus suis 1 928 species Streptococcus iniae 0 1346 1 species 1224 1 0 1308 Streptococcus thermophilus 671232 0 3 23373 species group species 1133 1 Streptococcus intermedius 0 1338 16339 species Streptococcus anginosus 1328 0 1 1 Streptococcus constellatus 76860 0 species 5901 Streptococcus marmotae 1825069 0 1 485 species 286 species Streptococcus himalayensis 1888195 0 1 species 737 1 Streptococcus parasanguinis 0 1318 15942 species Streptococcus agalactiae 0 1311 1 492 species 82348 0 Streptococcus pluranimalium 1 1166 species 0 1302 Streptococcus gordonii 1 1 Streptococcus uberis 1349 0 species 603 1 Streptococcus equinus 0 1335 species 683 1 Streptococcus pneumoniae 1313 0 species 1406 1962 species group 119603 0 2 species 1576 1 Streptococcus equi 1336 0 386 species Streptococcus dysgalactiae 1334 0 1 Streptococcus mitis 0 28037 1 2021 species Streptococcus oralis 1303 0 1 1443 species no rank 7160 7 2608887 0 species 1859 1 0 1156433 Streptococcus sp. I-P16 species 1694 1 Streptococcus sp. I-G2 1156431 0 394 species 0 1902136 Streptococcus sp. NPS 308 1 Streptococcus sp. FDAARGOS_192 0 1839799 1 1051 species 1 Streptococcus sp. A12 1759399 0 species 812 1 0 712633 Streptococcus sp. oral taxon 431 species 739 0 1319 Streptococcus sp. 'group B' 1 611 species species 524 1 Streptococcus pseudopneumoniae 257758 0 species 529 1 Streptococcus macedonicus 59310 0 0 150055 Streptococcus lutetiensis 1 2060 species 2514 species Streptococcus pasteurianus 197614 0 1 2244 species Streptococcus infantarius 0 102684 1 0 1305 Streptococcus sanguinis 1 441 species 1 Streptococcus pyogenes 1314 0 species 1904 1 1811193 0 Streptococcus pantholopis species 522 1 Streptococcus halotolerans 0 1814128 species 1069 5269 1 family 13 186828 0 Carnobacteriaceae 11 0 1 1470540 Jeotgalibaca 3 1194 1 genus 348 species Jeotgalibaca dankookensis 708126 0 1 845 no rank 0 2621505 1 1903686 0 Jeotgalibaca sp. PTS2502 1 845 species genus 1 821 2 Marinilactibacillus 6 191769 0 815 no rank 0 2632303 1 815 species Marinilactibacillus sp. 15R 1911586 0 1 genus 1 3241 5 Carnobacterium 0 2747 15 2 0 257487 no rank 1251 1 1564681 0 Carnobacterium sp. CP1 species 500 0 208596 Carnobacterium sp. 17-4 1 751 species 1146 species Carnobacterium maltaromaticum 0 2751 1 829 species Carnobacterium inhibens 0 147709 1 0 124 33958 Lactobacillaceae 58 43675 1 family 2767879 0 6 3655 genus Lactobacillus allii 0 1847728 1 728 species 620 species Lactobacillus heilongjiangensis 1074467 0 1 species 658 1 0 1602 Lactobacillus alimentarius 1 Lactobacillus farciminis 1612 0 species 529 1 1007676 0 Lactobacillus ginsenosidimutans species 658 Lactobacillus crustorum 0 392416 1 462 species 1 2767877 0 genus 486 species 486 1 0 148814 Lactobacillus kunkeei 3 0 2767886 genus 1369 1 0 267363 Lactobacillus zymae species 268 1580 0 Lactobacillus brevis 1 643 species Lactobacillus koreensis 0 637971 1 458 species genus 1642 3 2767842 0 species 807 1 0 1590 Lactobacillus plantarum Lactobacillus pentosus 0 1589 1 652 species species 183 1 60520 0 Lactobacillus paraplantarum 2767890 0 1 541 genus 541 species Lactobacillus hokkaidonensis 1193095 0 1 genus 851 2 2767889 0 1 375175 0 Lactobacillus backii species 431 1610 0 Lactobacillus coryniformis 1 420 species genus 1434 2 0 2767885 739 species 0 1599 Lactobacillus sakei 1 695 species 28038 0 Lactobacillus curvatus 1 1 15319 genus Lactobacillus 0 1578 1864 16 33959 0 Lactobacillus johnsonii 1 1663 species 562 species Lactobacillus jensenii 109790 0 1 species 471 1 1600 0 Lactobacillus acetotolerans species 1658 1 1584 0 Lactobacillus delbrueckii 1 Lactobacillus amylolyticus 0 83683 species 352 Lactobacillus gallinarum 52242 0 1 581 species 635 species Lactobacillus acidophilus 1579 0 1 no rank 1086 4 0 2620435 2099788 0 Lactobacillus sp. CBA3605 1 224 species species 334 1 1545702 0 Lactobacillus sp. wkB8 species 294 1 2099789 0 Lactobacillus sp. CBA3606 0 2108362 Lactobacillus sp. D1501 1 234 species species 954 1 0 1596 Lactobacillus gasseri species 3888 1 Lactobacillus amylovorus 1604 0 species 401 1 Lactobacillus kefiranofaciens 0 267818 1 0 1587 Lactobacillus helveticus species 1204 1 0 2767876 genus 1368 species 1368 1 1603 0 Lactobacillus amylophilus 1 2767892 0 genus 446 446 species Lactobacillus paracollinoides 240427 0 1 4 0 2767887 genus 6163 species 2440 1 Lactobacillus ruminis 1623 0 species 2561 1 Lactobacillus salivarius 1624 0 species 672 1 Lactobacillus agilis 1601 0 490 species 0 89059 Lactobacillus acidipiscis 1 genus 1 2445 6 Pediococcus 11 1253 0 734 species Pediococcus pentosaceus 0 1255 1 species 458 1 0 51663 Pediococcus damnosus 1 1670797 0 species group 531 531 species 0 1254 Pediococcus acidilactici 1 Pediococcus claussenii 0 187452 1 466 species 1 0 114090 Pediococcus inopinatus species 245 1060 genus 0 2767881 2 573 species 0 53444 Lactobacillus lindneri 1 1625 0 Lactobacillus sanfranciscensis 1 487 species 3 0 2742598 genus 2549 1187 species Lactobacillus reuteri 1598 0 1 0 97478 Lactobacillus mucosae 1 760 species species 602 1 0 1613 Lactobacillus fermentum 2759736 0 3 3057 genus 1 Lactobacillus paracasei 0 1597 species 954 1 Lactobacillus casei 0 1582 species 1348 Lactobacillus rhamnosus 0 47715 1 755 species genus 1166 3 2767893 0 1 0 1581 Lactobacillus buchneri species 533 278 species 0 152331 Lactobacillus parabuchneri 1 species 355 1 Lactobacillus curieae 0 1138822 Enterococcaceae 81852 98 0 20 1 34725 family 2 Tetragenococcus 51668 3 0 genus 1 1094 Tetragenococcus halophilus 0 51669 1 1091 species 1 1201 genus Melissococcus 33969 1 0 2 Melissococcus plutonius 0 33970 1 1200 species 3 2737 15 0 Vagococcus genus 1550 1 Vagococcus penaei 633807 0 1 661 species species 874 1 0 519472 Vagococcus teuberi 12 Enterococcus 0 1350 2059 genus 1 30782 1 Enterococcus thailandicus 0 417368 species 777 species 926 1 Enterococcus wangshanyuanii 2005703 0 525 species Enterococcus casseliflavus 0 37734 1 839 species 1354 0 Enterococcus hirae 1 1 0 53346 Enterococcus mundtii species 878 species 934 1 0 53345 Enterococcus durans species 18558 1 1352 0 Enterococcus faecium 2608891 0 3 1563 no rank 1 0 2057791 Enterococcus sp. CR-Ec1 species 522 species 470 1 0 2060306 Enterococcus sp. FDAARGOS_163 571 species 0 2060307 Enterococcus sp. FDAARGOS_375 1 Enterococcus faecalis 0 1351 1 3723 species family 1 3616 8 Aerococcaceae 0 4 186827 3612 1 genus 0 1375 108 Aerococcus 7 87541 0 Aerococcus christensenii 1 552 species 639 species 51665 0 Aerococcus urinaeequi 1 species 1048 1 0 1376 Aerococcus urinae 404 species 1377 0 Aerococcus viridans 1 128944 0 Aerococcus urinaehominis 1 332 species 529 species 119206 0 Aerococcus sanguinicola 1 263855 0 1 720 no rank 1 Lactobacillales bacterium 1993866 0 species 720 69076 1 class 34 909932 0 Negativicutes 31 1 12056 order Acidaminococcales 1843488 18 0 5 4 Acidaminococcaceae 0 909930 22 family 1 12038 3 Acidaminococcus 904 76 0 genus 1 12016 4098 species Acidaminococcus fermentans 0 905 1 1 187327 0 Acidaminococcus intestini species 7842 order 1 23910 14 Selenomonadales 909929 76 0 1 3014 family Sporomusaceae 1 1843490 0 4 genus 1 3013 3 Pelosinus 0 101 365348 no rank 1346 1 0 2629460 1346 species Pelosinus sp. UFO1 484770 0 1 species 1566 1 0 365349 Pelosinus fermentans family 1 20820 9 Selenomonadaceae 0 109 1843491 genus 1 18379 6 Selenomonas 94 970 0 0 971 Selenomonas ruminantium 1 4582 species 3 0 2637378 no rank 9599 Selenomonas sp. oral taxon 136 0 713030 1 3117 species species 3265 1 Selenomonas sp. oral taxon 478 0 712538 3217 species Selenomonas sp. oral taxon 920 1884263 0 1 1 Selenomonas sputigena 69823 0 species 4104 2332 1 genus 0 158846 6 Megamonas 2 species 2326 1 Megamonas hypermegale 0 158847 order 33076 1 11 0 1843489 353 Veillonellales family 1 32723 10 Veillonellaceae 31977 844 0 genus 1 14271 2 Dialister 23 39948 0 1 0 39950 Dialister pneumosintes species 14248 Negativicoccus 909928 14 0 2 1 3948 genus 1 0 1702287 Negativicoccus massiliensis species 3934 1 9565 genus Megasphaera 0 906 45 2 Megasphaera elsdenii 907 0 1 9520 species 3 Veillonella 0 29465 6 genus 1 4095 1 0 29466 Veillonella parvula species 2161 1 Veillonella rodentium 248315 0 species 1928 no rank 2077 2 0 33974 0 1930845 19 Ndongobacter 2 2077 1 genus species 2058 1 0 1871025 Ndongobacter massiliensis no rank 1057 1 84086 0 species 1057 1 243899 0 endosymbiont 'TC1' of Trimyema compressum class 1 1079 5 Limnochordia 0 7 1676648 4 Limnochordales 0 12 1676649 order 1 1072 family 1060 1 3 14 1676650 0 Limnochordaceae Limnochorda 0 4 1676651 2 1 1046 genus 1 0 1555112 Limnochorda pilosa species 1042 0 1737404 18 24442 class 16 Tissierellales 81 1737405 0 order 1 23095 family 1 19850 12 Peptoniphilaceae 5207 1570339 0 162289 12 0 Peptoniphilus 2 1232 1 genus 2637196 0 1 1220 no rank 1 1912856 0 Peptoniphilus sp. ING2-D1G species 1220 genus 2088 1 2 150022 18 0 Finegoldia 1 0 1260 Finegoldia magna species 2070 165779 19 0 Anaerococcus 3 2090 1 genus 1 1870984 0 Anaerococcus mediterraneensis species 864 species 1207 1 0 33034 Anaerococcus prevotii 1 6695 genus Murdochiella 0 3 1161127 2 species 6692 1 1852373 0 Murdochiella vaginalis 2538 1 genus 543311 15 0 Parvimonas 2 1 33033 0 Parvimonas micra species 2523 family 1 3164 3 Gottschalkiaceae 38 2042895 0 0 1505664 5 Gottschalkia 2 3126 1 genus 1556 0 Gottschalkia acidurici 1 3121 species no rank 1347 2 0 1737407 0 1582879 9 Ezakiella 2 1347 1 genus species 1338 1 1852374 0 Ezakiella massiliensis class 4169218 1 214 0 186801 267 Clostridia 1 485256 0 Natranaerobiales 4 771 1 order 3 Natranaerobiaceae 0 11 485255 family 1 770 genus 1 759 2 Natranaerobius 0 17 375928 1 375929 0 Natranaerobius thermophilus species 742 order 1 30537 35 Thermoanaerobacterales 0 36 68295 608 family 0 227387 1 608 genus 0 227388 1 608 species 0 184064 Thermodesulfobium narugense 1 2 4 543372 0 Thermoanaerobacterales Family IV. Incertae Sedis family 1117 1 genus 1113 1 0 252965 species 1113 1 Mahella australiensis 0 252966 Thermoanaerobacterales Family III. Incertae Sedis 33 543371 0 13 1 15553 family genus 10145 1 9 149 44000 0 Caldicellulosiruptor species 1263 1 Caldicellulosiruptor obsidiansis 717609 0 Caldicellulosiruptor lactoaceticus 52766 0 1 1159 species 1084 species 413889 0 Caldicellulosiruptor kronotskyensis 1 Caldicellulosiruptor bescii 0 31899 1 1392 species species 1304 1 Caldicellulosiruptor kristjanssonii 52765 0 1 0 55205 Caldicellulosiruptor owensensis species 1120 44001 0 Caldicellulosiruptor saccharolyticus 1 1367 species 0 413888 Caldicellulosiruptor hydrothermalis 1 1307 species 3 28895 9 0 Thermoanaerobacterium genus 5375 1 1 Thermoanaerobacterium thermosaccharolyticum 0 1517 species 3120 Thermoanaerobacterium xylanolyticum 0 29329 1 2246 species 18 0 25 186814 Thermoanaerobacteraceae family 13223 1 917 genus 249529 0 1 911092 0 Caldanaerobacter subterraneus 1 917 species 627 genus 0 129957 1 129958 0 Carboxydothermus hydrogenoformans 1 627 species 4 0 42857 no rank 1905 genus 1 743 2 Ammonifex 0 42837 4 species 739 1 42838 0 Ammonifex degensii 0 2 44260 Moorella 2 1162 1 genus Moorella thermoacetica 1525 0 1 1160 species 1 9146 genus Thermoanaerobacter 0 283 1754 9 species 1191 1 Thermoanaerobacter kivui 0 2325 1157 species 496866 0 Thermoanaerobacter pseudethanolicus 1 0 108150 Thermoanaerobacter italicus 1 951 species 29323 0 Thermoanaerobacter brockii 1 1156 species 1 Thermoanaerobacter wiegelii 0 46354 species 1138 no rank 2242 2 2636821 0 399726 0 Thermoanaerobacter sp. X514 1 1097 species 1 Thermoanaerobacter sp. X513 573062 0 species 1145 583357 0 Thermoanaerobacter mathranii 1 1028 species genus 1 603 2 Thermacetogenium 6 140458 0 1 85874 0 Thermacetogenium phaeum species 597 2770089 0 2 2163 order 1 0 2770092 family 1346 genus 1346 1 499228 0 0 499229 Tepidanaerobacter acetatoxydans 1 1346 species family 817 1 0 2770093 genus 817 1 291988 0 291990 0 Thermosediminibacter oceani 1 817 species order 1 4131023 162 Clostridiales 0 10982 186802 28748 1 family 0 216572 13 Oscillospiraceae 3 28735 1 genus 459786 34 0 Oscillibacter 2 1 Oscillibacter valericigenes 0 351091 species 28701 2304686 0 12 44191 family no rank 22575 1 2305130 0 1 1834198 0 Ruminiclostridium sp. KB18 species 22575 8568 genus 2304692 0 3 2479 species Herbivorax saccincola 0 1677857 1 1 [Clostridium] clariflavum 288965 0 species 3067 species 3022 1 0 1515 Ruminiclostridium thermocellum 0 1 1637257 Mageeibacillus 2 2455 1 genus 1 Mageeibacillus indolicus 0 884684 species 2454 3230 1 genus 0 1508657 319 Ruminiclostridium 2 2911 species 1521 0 [Clostridium] cellulolyticum 1 2 1 236752 0 Fastidiosipila genus 1486 1 species 1485 1 Fastidiosipila sanguinis 236753 0 1 2304693 0 genus 3556 species 3556 1 0 84032 [Clostridium] thermosuccinogenes 1 2304691 0 genus 2321 species 2321 1 0 1510 [Clostridium] stercorarium 10 186804 530 0 Peptostreptococcaceae family 86395 1 genus 1 1750 2 Filifactor 4 44259 0 1 143361 0 Filifactor alocis species 1746 no rank 967 1 1411023 0 species 967 1 2081703 0 Peptostreptococcaceae bacterium oral taxon 929 1833 genus 1481960 0 1 1833 species 1731 0 Peptoclostridium acidaminophilum 1 2 Clostridioides 313 1870884 0 genus 1 75734 species 75421 1 Clostridioides difficile 1496 0 1 186831 0 genus 2057 2057 species 1511 0 Acetoanaerobium sticklandii 1 genus 1 3524 2 Paeniclostridium 0 2 1849828 1 1505 0 Paeniclostridium sordellii species 3522 family 1 1121364 13 Ruminococcaceae 541000 371 0 Flavonifractor 946234 62 0 2 1 53997 genus species 53935 1 Flavonifractor plautii 0 292800 30192 1 genus 121 1263 0 Ruminococcus 3 20616 species 1160721 0 Ruminococcus bicirculans 1 1 0 1264 Ruminococcus albus species 9455 Herbivorax 1890281 0 1 3 genus no rank 7210 1 0 2305133 0 1572656 Ruminococcaceae bacterium CPB6 1 7210 species Ethanoligenens 0 253238 12 2 1 9727 genus species 9715 1 253239 0 Ethanoligenens harbinense genus 1 1015640 2 Faecalibacterium 0 411 216851 1015229 species Faecalibacterium prausnitzii 0 853 1 no rank 4224 1 552397 0 29343 0 [Clostridium] cellulosi 1 4224 species 1 2648 family Heliobacteriaceae 0 31984 9 3 2 Heliobacterium 0 2697 83 genus 1 2639 Heliobacterium modesticaldum 0 35701 1 2556 species 153332 1 family 336 31979 0 Clostridiaceae 41 0 834 1485 Clostridium 30 140523 1 genus 4358 species Clostridium saccharobutylicum 0 169679 1 1 1494 0 Clostridium cochlearium species 3117 1 Clostridium cellulovorans 1493 0 species 3659 18993 species 1491 0 Clostridium botulinum 1 1 Clostridium carboxidivorans 217159 0 species 3115 6787 species Clostridium perfringens 1502 0 1 0 1542 Clostridium novyi 1 3011 species species 5752 1 1501 0 Clostridium pasteurianum 4020 species Clostridium taeniosporum 0 394958 1 1 0 84023 Clostridium autoethanogenum species 2689 1 Clostridium tyrobutyricum 0 1519 species 2204 species 4880 1 36745 0 Clostridium saccharoperbutylacetonicum 1 0 1548 Clostridium scatologenes species 3923 0 1492 Clostridium butyricum 1 6903 species 2724 species 1509 0 Clostridium sporogenes 1 Clostridium estertheticum 238834 0 1 2995 species 1 Clostridium acetobutylicum 1488 0 species 2271 Clostridium kluyveri 0 1534 1 3948 species 1 0 46867 Clostridium chauvoei species 3598 species 6984 1 1561 0 Clostridium baratii Clostridium beijerinckii 1520 0 1 7183 species species 2165 1 0 1497 Clostridium formicaceticum 2732 species Clostridium ljungdahlii 1538 0 1 1513 0 Clostridium tetani 1 4075 species 4833 species 0 1216932 Clostridium bornimense 1 16725 no rank 0 2614128 2 species 3132 1 Clostridium sp. BNL1100 0 755731 species 13593 1 Clostridium sp. SY8519 1042156 0 1 0 29341 Clostridium argentinense species 4235 84022 0 Clostridium aceticum 1 1810 species genus 152 1 0 1981033 Mordavella 3 6 114627 0 Alkaliphilus genus 4078 1 Alkaliphilus oremlandii 461876 0 1 1853 species 1 Alkaliphilus metalliredigens 208226 0 species 2219 0 390805 6 Geosporobacter 2 3552 1 genus species 3546 1 1424294 0 Geosporobacter ferrireducens 4 0 66 49082 Candidatus Arthromitus genus 4691 1 3 2638829 0 no rank 4625 1549 species 0 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 1 0 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 1 1557 species Candidatus Arthromitus sp. SFB-mouse 49118 0 1 1519 species 2 68298 0 Syntrophomonadaceae 3 1007 1 family 496 genus 862 0 1 Syntrophomonas wolfei 0 863 1 496 species 509 genus 129001 0 1 509 species Syntrophothermus lipocalidus 0 86170 1 family 1 39781 3 Christensenellaceae 990719 72 0 Christensenella 0 990721 326 2 1 39709 genus 39383 species Christensenella massiliensis 0 1805714 1 Peptococcaceae 123 186807 0 29 1 25472 family genus 1095 1 0 2282740 Desulfotomaculum gibsoniae 102134 0 1 1095 species 0 471826 6 Candidatus Desulforudis 2 903 1 genus species 897 1 Candidatus Desulforudis audaxviator 0 471827 1034 genus 0 2282742 1 1 58138 0 Desulfotomaculum acetoxidans species 1034 2 278993 7 0 Thermincola genus 660 1 653 species Thermincola potens 0 863643 1 1 2491 genus Dehalobacterium 0 51514 7 2 1 Dehalobacterium formicoaceticum 51515 0 species 2484 genus 3079 1 4 0 38 79206 Desulfosporosinus species 933 1 Desulfosporosinus meridiei 0 79209 1113 species 1563 0 Desulfosporosinus orientis 1 995 species 0 885581 Desulfosporosinus acidiphilus 1 genus 1 5267 4 Dehalobacter 45 56112 0 1761 species Dehalobacter restrictus 55583 0 1 2635733 0 2 3461 no rank 1803 species Dehalobacter sp. CF 0 1131462 1 1 Dehalobacter sp. DCA 1147129 0 species 1658 Desulfotomaculum 1562 31 0 5 1 4302 genus 1 0 1565 Desulfotomaculum nigrificans species 942 Desulfotomaculum ruminis 0 1564 1 1683 species 839 species 0 1833852 Desulfotomaculum ferrireducens 1 species 807 1 59610 0 Desulfotomaculum reducens 1396 1 genus 51196 6 0 Syntrophobotulus 2 1390 species Syntrophobotulus glycolicus 0 51197 1 Desulfitobacterium 0 23 36853 5 1 5122 genus Desulfitobacterium dehalogenans 0 36854 1 1171 species 883 species Desulfitobacterium metallireducens 0 142877 1 836 species 0 233055 Desulfitobacterium dichloroeliminans 1 2209 species Desulfitobacterium hafniense 0 49338 1 Eubacteriaceae 0 186806 45 4 1 14796 family 2 0 241 1730 Eubacterium genus 13136 1 12895 species 0 1736 Eubacterium limosum 1 genus 1615 1 0 33951 1615 species 33952 0 Acetobacterium woodii 1 Symbiobacteriaceae 0 11 543349 3 1 3007 family 1 2996 genus Symbiobacterium 0 2733 17 2 species 2979 1 Symbiobacterium thermophilum 0 2734 1 2462343 family Lachnospiraceae 1049 186803 0 27 28050 0 1 301457 genus 1 [Eubacterium] eligens 39485 0 species 301457 2719231 0 1 15557 genus 15557 species 0 84030 [Clostridium] saccharolyticum 1 1 65151 genus Blautia 572511 35 0 3 0 2648079 1 23171 no rank 1 Blautia sp. YL58 1796616 0 species 23171 41945 species Blautia hansenii 1322 0 1 1 65801 genus Lachnoclostridium 143 1506553 0 4 species 35813 1 Lachnoclostridium phocaeense 1871021 0 no rank 22345 1 2608895 0 1 1834196 0 Lachnoclostridium sp. YL32 species 22345 species 7500 1 66219 0 Lachnoclostridium phytofermentans 2 Anaerotignum 2039240 7 0 genus 1 4146 0 28446 Anaerotignum propionicum 1 4139 species genus 110254 1 2719313 0 [Clostridium] bolteae 0 208479 1 110254 species 0 1663717 8 Herbinix 2 5012 1 genus species 5004 1 1679721 0 Herbinix luporum 115614 1 genus 207244 277 0 Anaerostipes 2 Anaerostipes hadrus 649756 0 1 115337 species Butyrivibrio 25 830 0 3 1 20076 genus 1 43305 0 Butyrivibrio proteoclasticus species 9656 species 10395 1 185008 0 Butyrivibrio hungatei 1 257232 genus Roseburia 22 841 0 2 Roseburia hominis 301301 0 1 257210 species 2 Cellulosilyticum 698776 12 0 genus 1 4545 species 4533 1 Cellulosilyticum lentocellum 29360 0 genus 91986 1 2569097 0 species 91986 1 0 39488 [Eubacterium] hallii 1404463 no rank 0 186928 2 1392001 species [Eubacterium] rectale 0 39491 1 12462 species Lachnospiraceae bacterium oral taxon 500 0 712991 1 136957 no rank 538999 0 10 1 2717089 0 genus 53476 species 53476 1 Mordavella sp. Marseille-P3756 0 2086584 family 1 5058 4 Clostridiales Family XIII. Incertae Sedis 0 543314 5 0 86331 9 Mogibacterium 2 2725 1 genus 0 114527 Mogibacterium diversum 1 2716 species 1 [Eubacterium] sulci 143393 0 species 2328 0 7 539000 Clostridiales Family XVII. Incertae Sedis 3 1428 1 family 1421 1 genus 73918 10 0 Thermaerobacter 2 1 Thermaerobacter marianensis 0 73919 species 1411 1 76995 genus Intestinimonas 1392389 343 0 2 species 76652 1 1297617 0 Intestinimonas butyriciproducens 10 0 53433 order 4457 1 2867 family Halanaerobiaceae 0 1 972 6 genus 2105 1 3 2330 50 0 Halanaerobium species 999 1 0 2331 Halanaerobium praevalens 656519 0 Halanaerobium hydrogeniformans 1 1056 species genus 1 761 2 Halothermothrix 0 32636 5 1 0 31909 Halothermothrix orenii species 756 Halobacteroidaceae 0 32 53434 4 1 1590 family 2 Halobacteroides 0 2 42417 genus 1 821 Halobacteroides halobius 0 42422 1 819 species 737 genus 0 28186 1 737 species Acetohalobium arabaticum 28187 0 1 144 1798711 0 clade 39599 144 Cyanobacteria 16 1117 0 phylum 1 39599 order 1303 1 6 0 41 52604 Pleurocapsales 3 1890498 0 family 1035 genus 1035 1 3 102115 7 0 Stanieria 1 0 2642663 no rank 633 1 0 1807358 Stanieria sp. NIES-3757 species 633 395 species Stanieria cyanosphaera 102116 0 1 2 0 1890500 family 227 227 1 genus 0 1 44474 Pleurocapsa 2 1 Pleurocapsa minor 0 54308 species 226 order 17604 1 56 1890424 180 0 Synechococcales family 289 2 2303730 0 genus 1 289 2 Halomicronema 0 170610 1 species 288 1 Halomicronema hongdechloris 1209493 0 2 0 1890429 family 284 2 Acaryochloris 0 4 155977 genus 1 284 155978 0 Acaryochloris marina 1 280 species 2 0 1890436 family 267 0 1 1152 Pseudanabaena 2 267 1 genus 1 0 2593292 no rank 266 species 266 1 Pseudanabaena sp. PCC 7367 82654 0 0 1890428 22 Merismopediaceae 5 641 1 family genus 619 1 4 0 12 1142 Synechocystis 3 0 2640012 no rank 607 species 194 1 1148 0 Synechocystis sp. PCC 6803 species 219 1 Synechocystis sp. PCC 6714 1147 0 2116702 0 Synechocystis sp. IPPAS B-1465 1 194 species Synechococcaceae 1890426 83 0 33 1 11055 family 1 146785 0 genus 254 Thermosynechococcus elongatus 0 146786 1 254 species Dactylococcopsis 2 13034 0 2 1 261 genus 1 Dactylococcopsis salina 0 292566 species 259 37 167375 0 Cyanobium 3 2306 1 genus no rank 1256 1 2627006 0 1 Cyanobium sp. NIES-981 1851505 0 species 1256 species 1013 1 59930 0 Cyanobium gracile 191 1129 0 Synechococcus 26 8151 1 genus 1 0 32046 Synechococcus elongatus species 266 2626047 0 23 7426 no rank 1 0 1280380 Synechococcus sp. KORDI-100 species 352 Synechococcus sp. KORDI-49 585423 0 1 371 species 345 species 0 110662 Synechococcus sp. CC9605 1 307 species 0 1350461 Synechococcus sp. UTEX 2973 1 1 Synechococcus sp. WH 8103 29410 0 species 397 species 214 1 Synechococcus sp. PCC 7502 0 1173263 93 species Synechococcus sp. CC9902 0 316279 1 1 Synechococcus sp. RCC307 316278 0 species 611 255 species Synechococcus sp. PCC 8807 0 195248 1 species 210 1 Synechococcus sp. PCC 6312 0 195253 1 0 374982 Synechococcus sp. PCC 73109 species 266 1 Synechococcus sp. NIES-970 0 1827144 species 170 Synechococcus sp. WH 8102 84588 0 1 396 species 1 585425 0 Synechococcus sp. KORDI-52 species 379 0 374981 Synechococcus sp. PCC 7003 1 216 species 199 species 0 195498 Synechococcus sp. PCC 7117 1 212 species 32049 0 Synechococcus sp. PCC 7002 1 1 0 321327 Synechococcus sp. JA-3-3Ab species 602 Synechococcus sp. JA-2-3B'a(2-13) 0 321332 1 414 species 1 Synechococcus sp. CC9311 0 64471 species 216 1 0 32051 Synechococcus sp. WH 7803 species 395 species 310 1 0 166314 Synechococcus sp. WH 8109 species 496 1 1916956 0 Synechococcus sp. SynAce01 268 species 0 33070 Synechococcus lividus 1 1 3248 family Prochloraceae 1213 2 0 5 genus 3246 1 4 0 5 1218 Prochlorococcus 2688 species Prochlorococcus marinus 1219 0 1 553 no rank 0 2627481 2 0 1501268 Prochlorococcus sp. MIT 0604 1 213 species Prochlorococcus sp. MIT 0801 1501269 0 1 340 species 1640 1 family 0 3 1890438 Leptolyngbyaceae 6 Leptolyngbya 0 1 47251 5 1 1637 genus 3 2650499 0 no rank 1378 782 species 1080068 0 Leptolyngbya sp. O-77 1 Leptolyngbya sp. PCC 7376 111781 0 1 242 species 1 1752064 0 Leptolyngbya sp. NIES-3755 species 354 1184 0 Leptolyngbya boryana 1 258 species 0 1301283 39 9406 subclass 3555 1 order 0 1150 42 Oscillatoriales 16 family 470 1 2 8 1892255 0 Gomontiellaceae 0 241421 1 462 genus 241425 0 Crinalium epipsammum 1 462 species family 1 745 2 Coleofasciculaceae 0 3 1892251 742 genus 63132 0 1 742 no rank 0 2648775 1 species 742 1 0 1173025 Geitlerinema sp. PCC 7407 5 Oscillatoriaceae 1892254 5 0 family 1 1255 3 0 1 1158 Oscillatoria genus 917 1 1 Oscillatoria nigro-viridis 0 482564 species 648 268 species Oscillatoria acuminata 0 118323 1 333 genus 1155738 0 1 species 333 1 Moorea producens 0 1155739 1892249 3 0 Cyanothecaceae 3 323 1 family 320 1 genus 6 43988 0 Cyanothece 2 314 no rank 0 2649277 1 species 314 1 Cyanothece sp. PCC 7425 0 395961 family 1 720 3 Microcoleaceae 3 1892252 0 0 1205 1 421 genus 421 species Trichodesmium erythraeum 0 1206 1 0 44471 1 296 genus 1 0 2642155 no rank 296 1173027 0 Microcoleus sp. PCC 7113 1 296 species 24 1118 0 Chroococcales 23 5851 1 order family 1 986 4 Microcystaceae 1890449 5 0 981 1 genus 1125 1 0 Microcystis 3 species 630 1 Microcystis aeruginosa 1126 0 no rank 350 1 2643300 0 species 350 1 Microcystis sp. MC19 0 1967666 1890450 0 8 2326 family 0 263510 1 427 genus 1 2546360 0 species 427 43989 0 Cyanothece sp. ATCC 51142 1 427 strain 212 no rank 92682 0 2 Halothece 0 2 76023 2 1 212 genus no rank 210 1 0 2632878 species 210 1 0 65093 Halothece sp. PCC 7418 2 2546365 0 genus 413 413 species 0 2546366 2 strain 225 1 0 395962 Cyanothece sp. PCC 8802 41431 0 Cyanothece sp. PCC 8801 1 188 strain 2 0 28070 genus 885 445 species 0 2546356 1 445 strain 65393 0 Cyanothece sp. PCC 7424 1 440 species 2546359 0 1 Cyanothece sp. PCC 7822 0 497965 1 440 strain 389 genus 0 1453359 1 389 species Candidatus Atelocyanobacterium thalassa 713887 0 1 family 1 534 3 Cyanobacteriaceae 1890452 1 0 533 1 genus 0 102234 2 Cyanobacterium 2 species 531 1 Cyanobacterium aponinum 379064 0 0 1 1890464 Chroococcaceae 7 1981 1 family genus 1 290 2 Gloeocapsa 0 1 102231 1 0 2623012 no rank 289 1 0 1173026 Gloeocapsa sp. PCC 7428 species 289 genus 502 1 268175 0 502 no rank 0 2648896 1 1 0 2005460 Chondrocystis sp. NIES-4102 species 502 genus 1 1188 3 Geminocystis 669357 2 0 2625037 0 2 1186 no rank 620 species 1615909 0 Geminocystis sp. NIES-3708 1 1 1617448 0 Geminocystis sp. NIES-3709 species 566 order 1 9109 33 Nostocales 1161 9 0 5253 1 family 0 10 1162 Nostocaceae 18 genus 1 638 3 Trichormus 264688 2 0 Trichormus azollae 1164 0 1 370 species 266 species Trichormus variabilis 264691 0 1 10 0 1177 16 Nostoc genus 3287 1 1306274 0 Nostoc flagelliforme 1 480 species species 408 1 Nostoc punctiforme 272131 0 7 2593658 0 no rank 2383 298 species 1751286 0 Nostoc sp. NIES-3756 1 364 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 0 1 1 Nostoc sp. PCC 7107 317936 0 species 341 species 372 1 1869241 0 Nostoc sp. CENA543 0 103690 Nostoc sp. PCC 7120 1 282 species 279 species 0 28072 Nostoc sp. PCC 7524 1 1261031 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 447 species Anabaena 0 1163 1 4 1 1318 genus no rank 947 2 2619674 0 species 485 1 Anabaena sp. WA102 0 1647413 Anabaena sp. 90 0 46234 1 462 species 1 Anabaena cylindrica 0 1165 species 370 8 0 2661849 family 2668 8 1186 12 0 Calothrix genus 2668 1 1 0 32054 Calothrix parietina species 467 6 2619626 0 no rank 2189 2005461 0 Calothrix sp. NIES-4101 1 375 species 1 0 99598 Calothrix sp. PCC 7507 species 268 Calothrix sp. NIES-3974 0 2005462 1 244 species species 708 1 Calothrix sp. NIES-4071 0 2005469 Calothrix sp. 336/3 0 1337936 1 286 species 0 1954171 Calothrix sp. NIES-2098 1 308 species 366 1 family 2 1892263 0 Hapalosiphonaceae 2 1190 0 1 364 genus 1 494603 0 no rank 364 species 364 1 Fischerella sp. NIES-3754 0 1752063 1 0 1219117 no rank 304 species 304 1 Nostocales cyanobacterium HT-58-2 1940762 0 family 1 509 3 Rivulariaceae 0 4 1185 2 Rivularia 1 373984 0 genus 1 505 504 no rank 0 2676603 1 1 373994 0 Rivularia sp. PCC 7116 species 504 0 1983111 1 210 no rank species 210 1 0 718217 cyanobacterium endosymbiont of Epithemia turgida order 341 2 1890505 0 family 341 2 1890528 0 2 Chroococcidiopsis 54298 1 0 genus 1 341 1 Chroococcidiopsis thermalis 0 54299 species 340 1610 1 class 17 307596 0 Gloeobacteria 6 1593 1 order 307595 23 0 Gloeobacterales 5 1 1570 family Gloeobacteraceae 0 1890422 13 4 genus 1557 1 3 0 44 33071 Gloeobacter species 643 1 0 1416614 Gloeobacter kilaueensis 1 0 33072 Gloeobacter violaceus species 870 phylum 35970 1 101 544448 1 0 Tenericutes 96 31969 36 0 Mollicutes class 32198 1 15011 1 order 23 186328 0 Entomoplasmatales 39 4440 1 family 33925 10 0 Entomoplasmataceae 14 genus 1299 1 5 46238 9 0 Entomoplasma species 396 1 Entomoplasma somnilux 0 215578 Entomoplasma luminosum 214888 0 1 269 species species 473 1 81459 0 Entomoplasma melaleucae 152 species Entomoplasma freundtii 0 74700 1 genus 3131 1 8 72 46239 0 Mesoplasma species 290 1 Mesoplasma entomophilum 2149 0 1 Mesoplasma chauliocola 0 216427 species 409 species 688 1 Mesoplasma florum 0 2151 1 219745 0 Mesoplasma tabanidae species 228 species 288 1 Mesoplasma coleopterae 0 324078 1 0 225999 Mesoplasma syrphidae species 363 Mesoplasma lactucae 138853 0 1 793 species Spiroplasmataceae 70 2131 0 24 1 10548 family genus 10478 1 23 0 2132 209 Spiroplasma 362 species 315358 0 Spiroplasma eriocheiris 1 452 species Spiroplasma helicoides 216938 0 1 458 species Spiroplasma cantharicola 0 362837 1 species 267 1 Spiroplasma syrphidicola 0 216945 334 species 2137 0 Spiroplasma apis 1 Spiroplasma clarkii 2139 0 1 716 species Spiroplasma citri 2133 0 1 553 species Spiroplasma litorale 0 216942 1 512 species 0 216936 Spiroplasma diminutum 1 492 species species 365 1 1114980 0 Spiroplasma atrichopogonis 1 216933 0 Spiroplasma chrysopicola species 301 species 514 1 Spiroplasma culicicola 0 216935 Spiroplasma floricola 216937 0 1 450 species 1 Spiroplasma sabaudiense 0 216944 species 368 no rank 888 2 2637901 0 Spiroplasma sp. TU-14 1898044 0 1 444 species species 444 1 1914410 0 Spiroplasma sp. NBRC 100390 812 species Spiroplasma kunkelii 47834 0 1 332 species 216934 0 Spiroplasma corruscae 1 1 0 216946 Spiroplasma turonicum species 572 species 365 1 0 2136 Spiroplasma monobiae species 365 1 2144 0 Spiroplasma mirum species 791 1 0 2145 Spiroplasma taiwanense 1 12237 order Mycoplasmatales 0 2085 9 43 family 1 12228 42 Mycoplasmataceae 0 2092 54 0 2767358 12 3983 genus species 425 1 Mycoplasma agalactiae 0 2110 Mycoplasma bovis 0 28903 1 483 species species 387 1 0 29555 Mycoplasma canis 1 Mycoplasma pulmonis 0 2107 species 250 species 220 1 Mycoplasma pullorum 0 48003 392 species 171284 0 Mycoplasma cynos 1 species 392 1 0 2094 Mycoplasma arginini Mycoplasma californicum 2113 0 1 161 species 0 2109 Mycoplasma synoviae 1 189 species 29553 0 Mycoplasma bovirhinis 1 318 species 1 Mycoplasma fermentans 2115 0 species 443 2112 0 Mycoplasma bovigenitalium 1 323 species genus 1 7558 27 Mycoplasma 2093 148 0 species 351 1 Mycoplasma arthritidis 0 2111 species 286 1 Mycoplasma crocodyli 0 50052 106 species 57372 0 Mycoplasma suis 1 species 79 1 0 2128 Mycoplasma flocculare 97 species 2097 0 Mycoplasma genitalium 1 128 species Mycoplasma bovoculi 45362 0 1 136241 0 Mycoplasma haemocanis 1 32 species 255 species Mycoplasma putrefaciens 0 2123 1 219 no rank 0 2683645 1 1 0 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) species 219 2104 0 Mycoplasma pneumoniae 1 41 species 57 species Mycoplasma ovis 171632 0 1 65123 0 Mycoplasma wenyonii 1 53 species Mycoplasma hyorhinis 0 2100 1 321 species 117 species 0 984991 Mycoplasma parvum 1 205 species 0 2096 Mycoplasma gallisepticum 1 51365 0 Mycoplasma yeatsii 1 473 species 1 0 2118 Mycoplasma mobile species 421 1 Mycoplasma penetrans 28227 0 species 566 29554 0 Mycoplasma canadense 1 405 species 584 species Mycoplasma hominis 0 2098 1 Mycoplasma haemofelis 29501 0 1 49 species 1 86660 0 Mycoplasma dispar species 140 3 0 656088 species group 2257 1 Mycoplasma mycoides 2102 0 species 968 Mycoplasma capricolum 2095 0 1 706 species 0 2105 Mycoplasma leachii 1 583 species 168 species 0 2099 Mycoplasma hyopneumoniae 1 2 0 2129 genus 633 134821 0 Ureaplasma parvum 1 353 species 1 0 2130 Ureaplasma urealyticum species 280 order 4914 1 13 0 3 186329 Acholeplasmatales family 4911 1 12 0 8 2146 Acholeplasmataceae genus 1380 1 6 0 27 33926 Candidatus Phytoplasma species group 678 3 0 85620 0 229545 Aster yellows witches'-broom phytoplasma 1 156 species species 233 1 202462 0 Maize bushy stunt phytoplasma species 289 1 Onion yellows phytoplasma 100379 0 species group 225 1 0 85630 0 37692 Candidatus Phytoplasma mali 1 225 species 0 85632 1 450 species group Candidatus Phytoplasma australiense 0 59748 1 450 species genus 1 3523 5 Acholeplasma 0 2147 57 0 61635 Acholeplasma brassicae 1 563 species Acholeplasma laidlawii 0 2148 1 949 species 35623 0 Acholeplasma oculi 1 774 species species 1180 1 Acholeplasma palmae 38986 0 1143 no rank 2799557 0 2 2 Candidatus Izimaplasma 1912503 1 0 genus 1 1143 no rank 1142 1 0 2624196 species 1142 1 Candidatus Izimaplasma sp. HR1 0 1541959 0 713063 2 2628 no rank 1493 species 1911684 0 Tenericutes bacterium MO-XQ 1 species 1135 1 0 1911683 Tenericutes bacterium MZ-XQ phylum 1 10749 47 Chloroflexi 0 200795 3 class 1 2286 9 Dehalococcoidia 0 301297 15 genus 821 1 3 670486 4 0 Dehalogenimonas species 375 1 552810 0 Dehalogenimonas lykanthroporepellens species 442 1 Dehalogenimonas formicexedens 1839801 0 order 1 1450 5 Dehalococcoidales 0 2 1202465 family 1448 1 4 1202464 4 0 Dehalococcoidaceae 3 Dehalococcoides 61434 1 0 genus 1 1444 species 1150 1 61435 0 Dehalococcoides mccartyi 293 no rank 237581 0 1 species 293 1 1522671 0 Dehalococcoides sp. UCH007 32061 31 0 Chloroflexia 11 2599 1 class 10 Chloroflexales 28 32064 0 order 1 2568 1403 suborder 0 1508595 4 4 Roseiflexaceae 0 1508635 11 family 1 1403 1392 1 genus 14 120961 0 Roseiflexus 3 0 2609473 1 661 no rank 1 Roseiflexus sp. RS-1 0 357808 species 661 1 Roseiflexus castenholzii 120962 0 species 717 suborder 1137 5 1508594 0 1137 1 family 1106 4 0 Chloroflexaceae 5 1107 8 0 Chloroflexus 4 1133 1 genus 152260 0 Chloroflexus aggregans 1 355 species Chloroflexus aurantiacus 0 1108 385 2 1 770 species 385 strain 0 480224 Chloroflexus sp. Y-400-fl 1 class 1186 1 9 9 189775 0 Thermomicrobia 4 Thermomicrobiales 0 4 189776 order 1 331 0 2 189777 Thermomicrobiaceae 3 327 1 family 2 Thermomicrobium 0 499 11 genus 1 325 314 species Thermomicrobium roseum 0 500 1 4 0 85000 subclass 846 order 846 1 4 0 85001 10 Sphaerobacterales 836 suborder 0 255728 3 1 836 family Sphaerobacteraceae 0 3 85002 3 1 833 genus Sphaerobacter 2056 8 0 2 1 Sphaerobacter thermophilus 2057 0 species 825 7 Anaerolineae 0 6 292625 class 1 2240 order 2234 1 6 0 292629 3 Anaerolineales 0 292628 9 Anaerolineaceae 5 2231 1 family 2 2019482 1 0 Brevefilum genus 432 1 1 Brevefilum fermentans 0 1986204 species 431 233189 0 1 629 genus 629 species Anaerolinea thermophila 0 167964 1 1324991 0 1 1161 no rank 1 Anaerolineaceae bacterium oral taxon 439 1889813 0 species 1161 1444 1 class 14 1382928 0 Ardenticatenia 5 Ardenticatenales 0 29 1382929 4 1 1430 order family 1401 1 3 0 7 1382930 Ardenticatenaceae 2 Candidatus Promineofilum 0 3 1988031 genus 1 1394 1 1806508 0 Candidatus Promineofilum breve species 1391 1 991 class Caldilineae 0 2 475962 5 4 475963 4 0 Caldilineales order 989 1 3 475964 9 0 Caldilineaceae family 985 1 genus 976 1 2 0 233191 19 Caldilinea 957 species Caldilinea aerophila 0 133453 1 no rank 315 2 1859062 0 genus 1 315 2 Thermobaculum 0 262406 3 species 312 1 0 166501 Thermobaculum terrenum 36 0 1297 phylum 19544 36 Deinococci 170 188787 0 class 1 19544 order 1 11684 15 Deinococcales 0 118964 132 14 Deinococcaceae 0 183710 47 family 1 11552 genus 1 11505 13 Deinococcus 186 1298 0 1044 species Deinococcus actinosclerus 1768108 0 1 850 species Deinococcus maricopensis 309887 0 1 Deinococcus puniceus 0 1182568 1 695 species 1299 0 Deinococcus radiodurans 1 818 species 1 1309411 0 Deinococcus soli Cha et al. 2016 species 1158 species 1361 1 0 502394 Deinococcus gobiensis Deinococcus geothermalis 0 68909 1 666 species no rank 971 1 2623546 0 971 species 0 2080419 Deinococcus sp. NW-56 1 species 1005 1 55148 0 Deinococcus proteolyticus 701 species 0 432329 Deinococcus peraridilitoris 1 707 species Deinococcus deserti 0 310783 1 1 0 1182571 Deinococcus swuensis species 1343 order 649 3 0 2762275 family 1 649 3 Trueperaceae 0 332247 7 genus 642 1 2 0 332248 3 Truepera 639 species 332249 0 Truepera radiovictrix 1 17 68933 106 0 Thermales order 7041 1 family 1 6935 16 Thermaceae 26 188786 0 genus 1 1155 3 Meiothermus 65551 6 0 600 species 0 277 Meiothermus ruber 1 Meiothermus silvanus 0 52022 1 549 species Oceanithermus 208447 7 0 2 1 1096 genus Oceanithermus profundus 187137 0 1 1089 species genus 1 958 2 Marinithermus 0 186191 9 1 0 186192 Marinithermus hydrothermalis species 949 1 3700 genus Thermus 73 270 0 8 species 539 1 456163 0 Thermus parvatiensis 0 2619321 1 400 no rank species 400 1 Thermus sp. CCB_US3_UF1 0 1111069 0 37636 Thermus scotoductus 1 343 species 329 species 0 56956 Thermus brockianus 1 451 species Thermus oshimai 0 56957 1 274 0 Thermus thermophilus 1 1065 species 500 species 271 0 Thermus aquaticus 1 4 0 67819 phylum 749 4 Fimbriimonadia 0 2 1663419 class 1 749 order 747 3 0 1663425 1 747 family Fimbriimonadaceae 1 1663426 0 3 746 1 genus 1005038 2 0 Fimbriimonas 2 1005039 0 Fimbriimonas ginsengisoli 1 744 species 5 0 200938 phylum 978 class 978 1 5 4 118001 0 Chrysiogenetes order 1 974 4 Chrysiogenales 0 9 189769 3 Chrysiogenaceae 4 189770 0 family 1 965 genus 1 961 2 Desulfurispirillum 393029 16 0 species 945 1 936456 0 Desulfurispirillum indicum phylum 1676 8 0 74152 0 99260 1 403 no rank 1 uncultured Termite group 1 bacterium 167965 0 species 403 641853 0 3 273 class order 1 273 3 Elusimicrobiales 0 1 641854 family 1 272 2 Elusimicrobiaceae 0 641876 3 1 423604 0 genus 269 species 269 1 Elusimicrobium minutum 0 423605 class 1000 4 0 447830 1 1000 order Endomicrobiales 0 1 1783344 4 1 999 family Endomicrobiaceae 1783343 7 0 3 2 0 1408194 genus 992 1 0 1408204 Candidatus Endomicrobium trichonymphae species 397 species 595 1 1408281 0 Endomicrobium proavitum phylum 148 2 2138240 0 2138243 3 0 Coprothermobacteria 2 148 1 class 1 2138246 0 order 145 145 family 0 2138247 1 genus 145 1 0 68335 Coprothermobacter proteolyticus 35786 0 1 145 species Acidobacteria 57723 1 0 21 1 6150 phylum 17 35 204432 0 Acidobacteriia class 5663 1 12 25 204433 0 Acidobacteriales order 4402 1 family 1 4377 11 Acidobacteriaceae 0 52 204434 Acidobacterium 7 33973 0 2 1 760 genus 753 species Acidobacterium capsulatum 0 33075 1 658061 2 0 Candidatus Koribacter 2 683 1 genus 681 species Candidatus Koribacter versatilis 0 658062 1 genus 1476 1 3 940557 33 0 Granulicella 940614 0 Granulicella mallensis 1 738 species 705 species Granulicella tundricola 940615 0 1 3 Terriglobus 392733 7 0 genus 1 1406 species 614 1 870903 0 Terriglobus saanensis species 785 1 Terriglobus roseus 0 392734 4 0 11 332160 Solibacterales order 1226 1 Solibacteraceae 332161 20 0 3 1 1215 family 12 332162 0 Candidatus Solibacter 2 1195 1 genus species 1183 1 Candidatus Solibacter usitatus 0 332163 3 Blastocatellia 8 1562566 0 class 1 486 478 1 genus 1 458032 0 Chloracidobacterium 2 species 477 1 458033 0 Chloracidobacterium thermophilum phylum 3485 13 0 40117 Nitrospira 203693 16 0 13 1 3485 class 1 3469 order Nitrospirales 0 189778 37 12 Nitrospiraceae 189779 57 0 11 1 3432 family Leptospirillum 18 179 0 4 1 725 genus 655606 0 1 176 species group 176 species Leptospirillum ferrooxidans 0 180 1 species group 267 1 261386 0 267 species 0 178606 Leptospirillum ferriphilum 1 264 species group 261385 0 1 Leptospirillum sp. Group II 'CF-1' 1660083 0 1 264 species 1 0 28261 genus 723 723 species 28262 0 Thermodesulfovibrio yellowstonii 1 1 1927 genus Nitrospira 0 15 1234 5 1 1715989 0 Candidatus Nitrospira inopinata species 480 1 330214 0 Nitrospira defluvii species 394 692 species Nitrospira moscoviensis 0 42253 1 species 346 1 1325564 0 Nitrospira japonica 41 200918 0 phylum 11973 188708 0 41 11973 class 0 2 1643947 Petrotogales 8 3373 1 order family 3371 7 1643949 0 Marinitoga 0 6 160798 3 1 2260 genus 0 2640159 1 1164 no rank species 1164 1 Marinitoga sp. 1137 1545835 0 1 149715 0 Marinitoga piezophila species 1090 genus 329 1 2 0 28236 11 Petrotoga species 318 1 69499 0 Petrotoga mobilis genus 782 1 2 0 4 1511648 Defluviitoga 778 species Defluviitoga tunisiensis 1006576 0 1 7697 1 order 3 2419 0 Thermotogales 28 family 1 4035 17 Thermotogaceae 188709 5 0 16 1643951 0 Pseudothermotoga 5 1365 1 genus 1 Pseudothermotoga elfii 0 38322 species 358 1 57487 0 Pseudothermotoga hypogea species 226 376 species Pseudothermotoga thermarum 119394 0 1 389 species Pseudothermotoga lettingae 0 177758 1 30 2335 0 Thermotoga 11 2665 1 genus 936 no rank 0 2631113 4 126740 0 Thermotoga sp. RQ2 1 258 species 262 species Thermotoga sp. RQ7 126738 0 1 204 species 0 1157948 Thermotoga sp. 2812B 1 Thermotoga sp. Cell2 0 1157947 1 212 species Thermotoga petrophila 93929 0 1 239 species 1 2337 0 Thermotoga neapolitana species 277 250 species 0 93930 Thermotoga naphthophila 1 species 333 1 Thermotoga maritima 0 2336 372 species Thermotoga profunda 0 1508420 1 1508419 0 Thermotoga caldifontis 1 228 species 10 Fervidobacteriaceae 21 1643950 0 family 1 3659 1 1070 genus Fervidobacterium 8 2422 0 4 1 0 2424 Fervidobacterium nodosum species 324 1 Fervidobacterium pennivorans 0 93466 species 524 214 species 0 2423 Fervidobacterium islandicum 1 1 2568 genus Thermosipho 0 2420 7 5 1 Thermosipho melanesiensis 0 46541 species 534 2676525 0 2 1295 no rank 1 Thermosipho sp. 1063 1462747 0 species 660 635 species 1437364 0 Thermosipho sp. 1070 1 1 2421 0 Thermosipho africanus species 732 903 order 0 1643946 5 0 1643948 5 Kosmotogaceae 5 903 1 family genus 641 2 0 651456 389 species 1330330 0 Kosmotoga pacifica 1 252 species 651457 0 Kosmotoga olearia 1 1 257 genus Mesotoga 1184396 4 0 2 species 253 1 1184387 0 Mesotoga prima phylum 807 2 68297 0 class 807 2 0 203486 order 807 2 0 203487 807 family 0 203488 2 807 genus 13 0 2 1 14 0 Dictyoglomus thermophilum species 481 Dictyoglomus turgidum 0 513050 1 326 species 92 0 1783257 clade 42134 9114 1 phylum 19 203682 0 Planctomycetes 37 7 Phycisphaerae 12 666505 0 class 1 1604 870 1 order 27 666506 0 Phycisphaerales 4 family 1 843 3 Phycisphaeraceae 0 12 666507 1 831 genus Phycisphaera 2 666508 0 2 829 species Phycisphaera mikurensis 547188 0 1 2 0 2483366 order 722 722 family 0 2483367 2 722 genus 0 2483368 2 432 species Phycisphaerae bacterium L21-RPul-D3 0 1940790 1 species 290 1 1941349 0 Phycisphaerae bacterium ST-PulAB-D4 1 7095 class Planctomycetia 0 203683 47 26 7 2691356 0 order 2256 2256 1 family 0 8 1763524 Isosphaeraceae 7 469 1 genus 127 9 0 Isosphaera 2 species 460 1 Isosphaera pallida 128 0 2 0 466152 3 Singulisphaera genus 615 1 species 612 1 466153 0 Singulisphaera acidiphila Paludisphaera 0 10 1763521 2 1 1164 genus 1 Paludisphaera borealis 0 1387353 species 1154 2691355 0 3 718 order 3 1 1914233 0 Gemmataceae family 718 1 2 Gemmata 2 113 0 genus 1 717 1 2622970 0 no rank 715 1630693 0 Gemmata sp. SH-PL17 1 715 species 10 Planctomycetales 150 112 0 order 1 3013 family 1 2863 9 Planctomycetaceae 0 126 20 0 3 1936111 Fuerstia 2 419 1 genus Fuerstia marisgermanicae 1891926 0 1 416 species 0 1649480 1 259 genus species 259 1 120 0 Planctopirus limnophila Rubinisphaera 0 1 1649490 2 1 396 genus 1 0 119 Rubinisphaera brasiliensis species 395 1769 1 genus 12 118 0 Planctomyces 3 2648843 0 2 1757 no rank 1035 species 0 1636152 Planctomyces sp. SH-PL62 1 species 722 1 Planctomyces sp. SH-PL14 1632864 0 2691354 0 5 1061 order 0 2691357 4 643 family 2 Pirellula 0 123 1 genus 1 224 species 223 1 Pirellula staleyi 0 125 1 419 genus Rhodopirellula 0 1 265488 2 418 species 265606 0 Rhodopirellula baltica 1 0 2691358 1 418 family genus 418 1 0 1676125 1 Thermogutta terrifontis 1331910 0 species 418 2517206 0 3 396 class 1 396 order Candidatus Brocadiales 0 6 1127829 3 family 390 1 2 3 1127830 0 Candidatus Brocadiaceae 1 0 380738 genus 387 species 387 1 174633 0 Candidatus Kuenenia stuttgartiensis 256845 0 3 21118 phylum class 1 21118 3 Lentisphaeria 1313211 13 0 2 278082 1155 0 Victivallales order 21105 1 1 1674876 0 no rank 19950 19950 species Victivallales bacterium CCUG 44730 0 2094242 1 134625 0 5 897 phylum 1 897 class Kiritimatiellae 0 6 1921781 5 order 1 891 4 Kiritimatiellales 0 1921782 7 family 884 1 3 0 1921783 2 Kiritimatiellaceae 2 0 1921784 10 Kiritimatiella genus 882 1 species 872 1 1307763 0 Kiritimatiella glycovorans phylum 1929 21 204428 0 1 1929 class Chlamydiia 0 3 204429 21 13 0 51291 1 Chlamydiales order 917 1 12 809 0 family 916 1113537 0 12 916 no rank genus 916 1 12 18 810 0 Chlamydia 78 species Chlamydia pecorum 0 85991 1 93 species Chlamydia pneumoniae 0 83558 1 85 species 0 83560 Chlamydia muridarum 1 101 species 83554 0 Chlamydia psittaci 1 Chlamydia gallinacea 0 1457153 1 57 species species 131 1 Chlamydia trachomatis 813 0 1 83559 0 Chlamydia suis species 106 species 70 1 0 83555 Chlamydia abortus 1 Chlamydia felis 0 83556 species 69 62 species 0 1457141 Chlamydia avium 1 1 Chlamydia caviae 0 83557 species 46 1009 1 order 1963360 3 0 Parachlamydiales 7 665 family 0 92713 2 genus 226 1 282132 0 389348 0 Candidatus Protochlamydia naegleriophila 1 226 species genus 439 1 83551 0 439 species Parachlamydia acanthamoebae 0 83552 1 2 92714 0 family 264 2 Waddlia 0 3 71666 genus 1 264 species 261 1 Waddlia chondrophila 71667 0 2 Simkaniaceae 0 7 92712 family 1 77 genus 70 1 0 34093 70 species Simkania negevensis 83561 0 1 phylum 9076 1 26 0 74201 7 Verrucomicrobia no rank 1312 2 0 417295 1 Verrucomicrobia bacterium IMCC26134 0 1637999 species 550 species 762 1 Verrucomicrobia bacterium 0 2026799 class 83 1 134549 0 1 0 134550 genus 83 83 no rank 0 2648876 1 species 83 1 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 0 Methylacidiphilae 1955630 1 0 4 1 360 class 717963 0 3 359 order 717964 0 3 359 family 1 359 genus Methylacidiphilum 0 511745 1 3 species 163 1 511746 0 Methylacidiphilum infernorum 1 Methylacidiphilum fumariolicum 0 591154 species 195 4421 1 class 0 414999 44 Opitutae 12 4 Puniceicoccales 4 415001 0 order 1 475 471 1 family 1 415002 0 Puniceicoccaceae 3 genus 470 1 2 0 442430 4 Coraliomargarita 466 species Coraliomargarita akajimensis 395922 0 1 order 3902 1 7 94 415000 0 Opitutales 6 0 37 134623 Opitutaceae family 3808 1 genus 1 1272 2 Lacunisphaera 0 1961799 31 1838286 0 Lacunisphaera limnophila 1 1241 species 1404 no rank 278955 0 1 1 0 794903 Opitutaceae bacterium TAV5 species 1404 genus 1 1095 2 Opitutus 0 12 178440 0 107709 Opitutus terrae 1 1083 species 2893 1 class 0 203494 4 Verrucomicrobiae 6 1 2889 order Verrucomicrobiales 0 27 48461 5 1647988 18 0 Akkermansiaceae 4 2862 1 family genus 1 2844 3 Akkermansia 239934 9 0 species 1354 1 Akkermansia glycaniphila 0 1679444 1481 species 0 239935 Akkermansia muciniphila 1 phylum 790 4 1930617 0 790 class 0 1962850 4 order 1 790 4 Calditrichales 3 1962852 0 787 1 family 1 1962854 0 Calditrichaceae 3 0 187144 7 Caldithrix 2 786 1 genus 779 species 187145 0 Caldithrix abyssi 1 508458 0 11 4839 phylum class 1 4839 11 Synergistia 0 9 649775 4830 1 order 0 649776 22 Synergistales 10 4808 1 family 30 649777 0 Synergistaceae 9 2 Acetomicrobium 1 49894 0 genus 1 349 Acetomicrobium mobile 0 97477 1 348 species 1 0 336260 genus 311 311 species 0 336261 Thermovirga lienii 1 genus 358 1 0 81466 358 species 81468 0 Aminobacterium colombiense 1 2 Cloacibacillus 0 508459 1 genus 1 3259 1 Cloacibacillus porcorum 0 1197717 species 3258 2 0 4 81461 Thermanaerovibrio genus 501 1 species 497 1 0 81462 Thermanaerovibrio acidaminovorans 58 0 203691 phylum 33236 0 203692 65 Spirochaetia 58 33236 1 class 41 Spirochaetales 0 136 671 order 1 24078 23 Spirochaetaceae 179 137 0 family 1 19559 19 146 0 Spirochaeta 3 1295 1 genus 0 46355 Spirochaeta africana 1 616 species 1 Spirochaeta thermophila 0 154 species 660 genus 1 13743 12 Treponema 157 48 0 150829 0 Treponema azotonutricium 1 984 species 701 species Treponema primitia 88058 0 1 1 167 0 Treponema succinifaciens species 5223 1 0 158 Treponema denticola species 847 1 53435 0 Treponema paraluiscuniculi species 77 Treponema brennaborense 0 81028 1 1856 species 71 species 0 160 Treponema pallidum 1 1194 no rank 2638727 0 1 1194 species 1539298 0 Treponema sp. OMZ 838 1 Treponema pedis 409322 0 1 797 species species 1409 1 0 221027 Treponema putidum 536 species 215591 0 Treponema caldarium 1 1 2964 genus Sphaerochaeta 399320 11 0 4 1087 species 273376 0 Sphaerochaeta coccoides 1 1 Sphaerochaeta pleomorpha 1131707 0 species 640 1226 species Sphaerochaeta globosa 0 1131703 1 genus 661 1 0 1911556 species 661 1 0 55206 Sediminispirochaeta smaragdinae Salinispira 0 1 1616789 2 1 717 genus species 716 1 Salinispira pacifica 0 1307761 1 3848 family Borreliaceae 0 4 1643685 17 8 36 64895 0 Borreliella genus 1942 1 species 371 1 Borreliella garinii 0 29519 1 Borreliella afzelii 29518 0 species 371 1 0 64897 Borreliella bissettii species 232 176 species Borreliella valaisiana 62088 0 1 species 224 1 0 139 Borreliella burgdorferi 196 species 664662 0 Borreliella bavariensis 1 1 1674146 0 Borrelia mayonii species 336 1 1902 genus Borrelia 0 138 58 8 1 Borrelia turicatae 0 142 species 189 1 Borrelia parkeri 141 0 species 208 0 143 Borrelia anserina 1 278 species Borrelia recurrentis 0 44449 1 172 species species 633 1 Borrelia miyamotoi 47466 0 0 40834 Borrelia duttonii 1 181 species species 183 1 Borrelia hermsii 0 140 3490 order 0 1643688 9 3490 1 family 170 10 0 Leptospiraceae 9 1 2925 genus Leptospira 171 4 0 6 Leptospira interrogans 173 0 1 1117 species 1 Leptospira alstonii 0 28452 species 696 1 0 174 Leptospira borgpetersenii species 508 1 28183 0 Leptospira santarosai species 363 species 237 1 172 0 Leptospira biflexa 555 1 genus 0 338321 1 Turneriella 2 species 554 1 29510 0 Turneriella parva 0 1643686 20 Brachyspirales 7 5603 1 order 40 143786 0 Brachyspiraceae 6 5583 1 family 5 29521 28 0 Brachyspira genus 5543 1 Brachyspira hyodysenteriae 159 0 1 1349 species 1 Brachyspira pilosicoli 0 52584 species 1860 1315 species Brachyspira murdochii 84378 0 1 1 Brachyspira intermedia 84377 0 species 991 33665 phylum 32066 0 25 33665 1 class 203490 20 0 Fusobacteriia 25 1 33645 order Fusobacteriales 0 203491 86 24 25562 1 family 0 44 203492 Fusobacteriaceae 12 Ilyobacter 2 167639 0 2 1 1015 genus Ilyobacter polytropus 167642 0 1 1013 species 0 848 81 Fusobacterium 9 24503 1 genus Fusobacterium ulcerans 861 0 1 1681 species 1 Fusobacterium hwasookii 0 1583098 species 2591 1 856 0 Fusobacterium varium species 3321 1 850 0 Fusobacterium mortiferum species 1638 species 1016 1 Fusobacterium necrophorum 859 0 species 4776 1 Fusobacterium periodonticum 0 860 1 Fusobacterium gonidiaformans 849 0 species 905 1 Fusobacterium nucleatum 0 851 species 8494 37 1129771 0 Leptotrichiaceae 11 7997 1 family genus 1 1218 2 Streptobacillus 0 34104 1 1217 species Streptobacillus moniliformis 0 34105 1 5 10 32067 0 Leptotrichia genus 4290 1 species 1165 1 Leptotrichia buccalis 0 40542 no rank 3115 3 2633022 0 Leptotrichia sp. oral taxon 212 0 712357 1 1202 species 1 Leptotrichia sp. oral taxon 498 0 712368 species 851 1 1785996 0 Leptotrichia sp. oral taxon 847 species 1062 168808 2 0 Sneathia 2 1256 1 genus 1254 species Sneathia amnii 187101 0 1 32068 0 1 1196 genus species 1196 1 826 0 Sebaldella termitidis 482 1224 0 Proteobacteria 1994 1111345 1 phylum 7 1807140 1 0 Acidithiobacillia class 1495 1 1494 1 order 0 12 225057 Acidithiobacillales 6 0 225058 6 Acidithiobacillaceae 5 1482 1 family 0 10 119977 Acidithiobacillus 4 1476 1 genus Acidithiobacillus ferrivorans 0 160808 1 567 species 511 species 0 33059 Acidithiobacillus caldus 1 Acidithiobacillus ferrooxidans 920 0 1 388 species 233377 1 class 611 28216 0 Betaproteobacteria 346 1 8936 order Nitrosomonadales 0 32003 75 43 family 694 1 3 9 2008790 0 Thiobacillaceae genus 1 685 2 Thiobacillus 919 10 0 Thiobacillus denitrificans 0 36861 1 675 species 32011 7 0 Methylophilaceae 13 2095 1 family 0 1679002 2 213 genus species 107 1 1581557 0 Candidatus Methylopumilus planktonicus 106 species 0 1581680 Candidatus Methylopumilus turicensis 1 3 Methylotenera 359407 3 0 genus 1 439 species 206 1 Methylotenera versatilis 1055487 0 Methylotenera mobilis 359408 0 1 230 species 3 81682 19 0 Methylovorus genus 910 1 452 no rank 2634027 0 1 1 Methylovorus sp. MP688 887061 0 species 452 439 species 266009 0 Methylovorus glucosotrophus 1 1 353 genus Methylobacillus 404 2 0 2 351 species Methylobacillus flagellatus 0 405 1 genus 173 1 2 0 2 16 Methylophilus 2630143 0 1 171 no rank 1 1662285 0 Methylophilus sp. TWE2 species 171 206379 21 0 Nitrosomonadaceae 12 2636 1 family 4 Nitrosospira 35798 3 0 genus 1 912 species 226 1 0 1231 Nitrosospira multiformis 447 species 35799 0 Nitrosospira briensis 1 species 236 1 0 1288494 Nitrosospira lacus genus 1703 1 7 0 914 4 Nitrosomonas 915 0 Nitrosomonas europaea 1 439 species species 178 1 Nitrosomonas ureae 0 44577 1 Nitrosomonas communis 0 44574 species 209 2 0 2609265 no rank 643 species 299 1 Nitrosomonas sp. Is79A3 261292 0 344 species Nitrosomonas sp. AL212 0 153948 1 230 species 0 916 Nitrosomonas eutropha 1 955 family 0 2772226 4 1778653 8 0 Sulfuriferula 2 431 1 genus 1 0 2637784 no rank 423 1 0 1985873 Sulfuriferula sp. AH1 species 423 2 Sulfuricella 9 935200 0 genus 1 524 515 species Sulfuricella denitrificans 0 649841 1 family 1459 1 5 50 2008793 0 Sterolibacteriaceae 667 1 genus 0 19 1054211 Sulfuritalea 2 species 648 1 Sulfuritalea hydrogenivorans 748811 0 genus 742 1 2 0 37 378210 Methyloversatilis 1 2639971 0 no rank 705 species 705 1 Methyloversatilis sp. RAC08 1842540 0 1022 1 family 90627 61 0 Gallionellaceae 5 690 1 genus 314343 15 0 Sideroxydans 2 species 675 1 63745 0 Sideroxydans lithotrophicus 1 271 genus Gallionella 96 4 0 2 370405 0 Gallionella capsiferriformans 1 267 species no rank 2483 11 119066 0 0 189384 1 1 genus 1 Candidatus Tremblaya princeps 189385 0 species 1 0 36 33055 Kinetoplastibacterium 6 1469 1 genus Candidatus Kinetoplastibacterium galatii 994695 0 1 157 species 316 species 33056 0 Candidatus Kinetoplastibacterium crithidii 1 species 264 1 233181 0 Kinetoplastibacterium blastocrithidii 276 species Candidatus Kinetoplastibacterium oncopeltii 994696 0 1 1 994692 0 Candidatus Kinetoplastibacterium desouzaii species 420 1 1381133 0 genus 190 190 species Candidatus Profftella armatura 0 669502 1 0 327159 9 Candidatus Accumulibacter 2 761 1 genus species 752 1 327160 0 Candidatus Accumulibacter phosphatis genus 62 1 1301080 0 0 1160784 Candidatus Nasuia deltocephalinicola 1 62 species 36 Neisseriales 0 206351 234 order 1 18357 1 10048 family Neisseriaceae 481 187 0 22 2 Snodgrassella 0 2 1193515 genus 1 416 0 1196083 Snodgrassella alvi 1 414 species genus 1 615 3 Vitreoscilla 59 5 0 63 0 Vitreoscilla filiformis 1 487 species no rank 123 1 2627922 0 1 Vitreoscilla sp. C1 96942 0 species 123 1 0 421605 no rank 405 2052837 0 Neisseriaceae bacterium DSM 100970 1 405 species 7667 1 genus 139 482 0 Neisseria 12 species 814 1 Neisseria lactamica 486 0 2 2623750 0 no rank 1193 Neisseria sp. 10022 0 1853276 1 277 species species 916 1 655307 0 Neisseria sp. KEM232 1 0 326523 Neisseria zoodegmatis species 437 species 526 1 488 0 Neisseria mucosa species 384 1 Neisseria weaveri 28091 0 1 490 0 Neisseria sicca species 480 species 574 1 Neisseria sp. 10023 0 1853278 1904 species 487 0 Neisseria meningitidis 1 482 species 0 485 Neisseria gonorrhoeae 1 species 734 1 Neisseria elongata 495 0 genus 176 1 0 71 0 72 Simonsiella muelleri 1 176 species genus 1 582 2 Eikenella 3 538 0 1 Eikenella corrodens 539 0 species 579 13 Chromobacteriaceae 83 1499392 0 family 1 8075 2 168470 0 Laribacter 2 1013 1 genus 1011 species Laribacter hongkongensis 168471 0 1 genus 1048 1 2 0 23 885864 Jeongeupia 1 2619593 0 no rank 1025 species 1025 1 0 1906741 Jeongeupia sp. USM3 4224 no rank 0 90153 4 4 68 535 0 Chromobacterium genus 4224 1 1682 species 1108595 0 Chromobacterium vaccinii 1 Chromobacterium violaceum 536 0 1 1328 species 2641838 0 1 1146 no rank 1 0 2059672 Chromobacterium sp. ATCC 53434 species 1146 Aquaspirillum 0 187 17 2 1 682 genus 665 no rank 2620219 0 1 665 species Aquaspirillum sp. LM1 1938604 0 1 15 568394 0 Pseudogulbenkiania 2 1025 1 genus 1 0 2642558 no rank 1010 1 Pseudogulbenkiania sp. NH8B 748280 0 species 1010 0 33809 2 960 no rank 1 0 1904640 Betaproteobacteria bacterium GR16-43 species 820 0 543913 beta proteobacterium CB 1 140 species Rhodocyclales 0 206389 226 22 1 12310 order 2781 1 family 75787 53 0 Rhodocyclaceae 6 1354 1 genus 0 146937 20 Azospira 2 0 146939 Azospira oryzae 1 1334 species 2 0 23 551759 Aromatoleum genus 756 1 1 Aromatoleum aromaticum 551760 0 species 733 no rank 618 1 75788 0 1 0 1898103 Rhodocyclaceae bacterium species 618 family 8693 1 12 222 2008794 0 Zoogloeaceae genus 1 4870 6 Thauera 33057 111 0 species 860 1 0 1134435 Thauera humireducens species 794 1 59405 0 Thauera aromatica no rank 2219 2 0 2609274 987 species 0 85643 Thauera sp. MZ1T 1 2005884 0 Thauera sp. K11 1 1232 species Thauera chlorobenzoica 0 96773 1 886 species Azoarcus 12960 110 0 5 1 3601 genus 0 2067960 Azoarcus sp. SY39 1 820 species 1895 no rank 2629479 0 2 Azoarcus sp. CIB 0 198107 1 1014 species 881 species 0 748247 Azoarcus sp. KH32C 1 1 418699 0 Azoarcus olearius species 776 2008795 5 0 Azonexaceae 3 610 1 family 2 0 73029 20 Dechloromonas genus 605 1 Dechloromonas aromatica 259537 0 1 585 species 1 189720 order Burkholderiales 0 1986 80840 231 1 34627 family Alcaligenaceae 506 249 0 41 183 genus 0 1100891 1 183 species Paenalcaligenes hominis 0 643674 1 6 Achromobacter 222 373 0 genus 1 12565 1 32002 0 Achromobacter denitrificans species 2676 no rank 1322 1 0 2626865 species 1322 1 Achromobacter sp. AONIH1 0 1758194 1024 species Achromobacter insolitus 217204 0 1 Achromobacter xylosoxidans 0 85698 1 4940 species 0 217203 Achromobacter spanius 1 2230 species 3 0 290425 4 Advenella genus 1076 1 1 302406 0 Advenella mimigardefordensis species 538 0 310575 Advenella kashmirensis 1 534 species 6 507 0 Alcaligenes 2 1259 1 genus 1253 species 511 0 Alcaligenes faecalis 1 1 1149 genus Orrella 1921582 10 0 2 1 0 1851544 Orrella dioscoreae species 1139 2 Pusillimonas 305976 2 0 genus 1 641 no rank 639 1 0 2640016 Pusillimonas sp. T7-7 1007105 0 1 639 species 1 0 1472344 genus 168 168 species 1472345 0 Basilea psittacipulmonis 1 1 519 genus Taylorella 0 1 29574 3 Taylorella asinigenitalis 84590 0 1 314 species 0 29575 Taylorella equigenitalis 1 204 species 1 90243 0 genus 255 species 255 1 Oligella urethralis 90245 0 2 Castellaniella 57 359336 0 genus 1 1135 1 Castellaniella defragrans 75697 0 species 1078 genus 15428 1 17 531 517 0 Bordetella 94624 0 Bordetella petrii 1 915 species species 1008 1 0 519 Bordetella parapertussis Bordetella bronchialis 0 463025 1 1043 species 1 Bordetella bronchiseptica 0 518 species 1949 2630031 0 1 803 no rank 1 1697043 0 Bordetella sp. H567 species 803 533 species Bordetella avium 521 0 1 325 species Bordetella holmesii 35814 0 1 1052 species Bordetella genomosp. 8 1416806 0 1 0 463014 Bordetella flabilis 1 908 species 1 Bordetella pseudohinzii 1331258 0 species 810 771 species 123899 0 Bordetella trematum 1 1 0 463040 Bordetella genomosp. 13 species 996 520 0 Bordetella pertussis 1 844 species 0 1416803 Bordetella genomosp. 9 1 832 species 463024 0 Bordetella genomosp. 6 1 1174 species species 934 1 Bordetella hinzii 103855 0 family 20806 1 28 0 218 75682 Oxalobacteraceae Herminiimonas 0 303379 10 3 1 788 genus 1 0 1809410 Herminiimonas arsenitoxidans species 380 species 398 1 Herminiimonas arsenicoxydans 204773 0 846 0 1 930 genus 1 0 847 Oxalobacter formigenes species 930 4 64 202907 0 Collimonas genus 3315 1 1020 species Collimonas fungivorans 0 158899 1 1 Collimonas arenae 279058 0 species 1005 1226 species 279113 0 Collimonas pratensis 1 genus 4843 1 7 29580 58 0 Janthinobacterium species 1164 1 Janthinobacterium svalbardensis 368607 0 species 791 1 Janthinobacterium agaricidamnosum 55508 0 0 2610881 4 2830 no rank 1087 species Janthinobacterium sp. LM6 1938606 0 1 1 Janthinobacterium sp. B9-8 0 1236179 species 380 1 Janthinobacterium sp. 1_2014MBL_MicDiv 0 1644131 species 1024 species 339 1 375286 0 Janthinobacterium sp. Marseille 5091 1 genus 0 129 963 Herbaspirillum 6 0 2624150 1 500 no rank 500 species 0 2025949 Herbaspirillum sp. meg3 1 1332 species Herbaspirillum seropedicae 964 0 1 1 Herbaspirillum frisingense 92645 0 species 1322 1 80842 0 Herbaspirillum rubrisubalbicans species 974 species 834 1 Herbaspirillum hiltneri 341045 0 0 106 149698 Massilia 6 5621 1 genus 1178 species 0 1141883 Massilia putida 1 1 2072590 0 Massilia sp. ZMN-3 species 1264 no rank 2179 2 2609279 0 1111 species 1678028 0 Massilia sp. NR 4-1 1 1707785 0 Massilia sp. WG5 1 1068 species 1 Massilia sp. B2 2045208 0 species 894 0 224471 17 10435 no rank Leptothrix 0 25 88 2 1 1282 genus Leptothrix cholodnii 34029 0 1 1257 species 883 1 genus 0 40 316612 Methylibium 2 species 843 1 Methylibium petroleiphilum 0 105560 1 1193 genus Rhizobacter 0 212743 74 2 species 1119 1 946333 0 Rhizobacter gummiphilus genus 1088 1 2 0 44 65047 Mitsuaria 1 0 2648776 no rank 1044 species 1044 1 Mitsuaria sp. 7 1658665 0 1315 1 genus 0 32012 11 Thiomonas 2 species 1304 1 0 926 Thiomonas intermedia 1 1461 genus Rubrivivax 0 28067 34 2 0 28068 Rubrivivax gelatinosus 1 1427 species Paucibacter 0 318147 17 2 1 871 genus 0 2642959 1 854 no rank Paucibacter sp. KCTC 42545 0 1768242 1 854 species 2 Roseateles 0 39 93681 genus 1 1380 species 1341 1 76731 0 Roseateles depolymerans [Polyangium] brachysporum 0 413882 1 962 species 84 Burkholderiaceae 461 119060 0 family 1 78402 41 Burkholderia 2124 32008 0 genus 1 41718 1895 species 0 337 Burkholderia glumae 1 species group 6190 7 0 111527 species 488 1 0 1637831 Burkholderia sp. MSMB617WGS 514 species Burkholderia mallei 0 13373 1 1 Burkholderia oklahomensis 0 342113 species 994 species 1816 1 28450 0 Burkholderia pseudomallei species 528 1 Burkholderia sp. MSMB0852 0 1637841 1330 species Burkholderia thailandensis 0 57975 1 520 species 1637837 0 Burkholderia sp. MSMB0266 1 0 87882 19 20775 species group species 3687 1 0 292 Burkholderia cepacia 152480 0 Burkholderia ambifaria 1 734 species species 652 1 0 488447 Burkholderia contaminans Burkholderia seminalis 488731 0 1 567 species 1 Burkholderia latens 488446 0 species 529 species 1130 1 482957 0 Burkholderia lata 721 species 265293 0 [Pseudomonas] mesoacidophila 1 1 1207504 0 Burkholderia pseudomultivorans species 726 species 529 1 Burkholderia diffusa 0 488732 429 species 60550 0 Burkholderia pyrrocinia 1 904 species 0 95485 Burkholderia stabilis 1 species 964 1 0 60552 Burkholderia vietnamiensis species 3170 1 Burkholderia cenocepacia 0 95486 1 Burkholderia ubonensis 0 101571 species 2174 species 482 1 0 1503055 Burkholderia territorii species 577 1 0 152500 Burkholderia dolosa species 1445 1 Burkholderia multivorans 0 87883 1 0 1503054 Burkholderia stagnalis species 742 Burkholderia metallica 0 488729 1 613 species 1 Burkholderia plantarii 41899 0 species 1136 11 0 2613784 no rank 7646 571 species Burkholderia sp. PAMC 28687 1795874 0 1 1 Burkholderia sp. Bp7605 1740163 0 species 750 1 Burkholderia sp. CCGE1003 0 640512 species 619 species 869 1 Burkholderia sp. HB1 0 1678678 1 Burkholderia sp. PAMC 26561 1795043 0 species 544 640510 0 Burkholderia sp. CCGE1001 1 788 species species 1014 1 Burkholderia sp. RPE67 758796 0 species 552 1 Burkholderia sp. Bp5365 0 1740162 Burkholderia sp. 2002721687 0 1468409 1 484 species 1 Burkholderia sp. YI23 1097668 0 species 932 523 species 0 416344 Burkholderia sp. KJ006 1 28095 0 Burkholderia gladioli 1 1952 species 332 genus 2571159 0 1 1 412963 0 Paraburkholderia rhizoxinica species 332 Ralstonia 0 48736 191 5 1 7515 genus 1152 species Ralstonia insidiosa 190721 0 1 Ralstonia mannitolilytica 0 105219 1 1028 species 1 Ralstonia solanacearum 0 305 species 3632 species 1512 1 0 329 Ralstonia pickettii 9 385 106589 0 Cupriavidus genus 10504 1 883 species 82541 0 Cupriavidus gilardii 1 species 1301 1 Cupriavidus sp. USMAA1020 0 367825 1070 species Cupriavidus pinatubonensis 0 248026 1 species 1858 1 Cupriavidus necator 0 106590 no rank 2839 2 0 2640874 0 876364 Cupriavidus sp. USMAA2-4 1 1504 species 0 1389192 Cupriavidus sp. USMAHM13 1 1335 species 1081 species Cupriavidus basilensis 68895 0 1 species 1087 1 0 119219 Cupriavidus metallidurans 0 44013 1 Polynucleobacter 4 604 1 genus species 160 1 576611 0 Polynucleobacter asymbioticus 210 species Polynucleobacter duraquae 1835254 0 1 Polynucleobacter necessarius 576610 0 1 233 species Paraburkholderia 0 218 1822464 12 1 10248 genus 1 0 36873 Paraburkholderia xenovorans species 1001 972 species 0 2026199 Paraburkholderia aromaticivorans 1 1 Paraburkholderia phymatum 148447 0 species 941 1 Paraburkholderia terrae 311230 0 species 716 species 1373 1 75105 0 Paraburkholderia caribensis 876 species 252970 0 Paraburkholderia phenoliruptrix 1 species 716 1 134537 0 Paraburkholderia fungorum species 920 1 Paraburkholderia hospita 169430 0 1 Paraburkholderia phytofirmans 0 261302 species 744 1 0 2615204 no rank 724 1 0 1926494 Paraburkholderia sp. SOS3 species 724 1047 species 948107 0 Paraburkholderia sprentiae 1 1827195 0 1 910 genus 910 species Burkholderia sp. RPE64 758793 0 1 10 Pandoraea 0 208 93217 genus 1 6110 93222 0 Pandoraea sputorum 1 672 species species 541 1 Pandoraea faecigallinarum 656179 0 0 573737 Pandoraea oxalativorans 1 767 species 93219 0 Pandoraea norimbergensis 1 658 species Pandoraea pnomenusa 93220 0 1 1006 species Pandoraea vervacti 656178 0 1 567 species 1 Pandoraea apista 93218 0 species 501 673 species Pandoraea pulmonicola 0 93221 1 species 517 1 445709 0 Pandoraea thiooxydans 0 80841 2 974 no rank Burkholderiales bacterium GJ-E10 0 1469502 1 381 species 1 Burkholderiales bacterium YL45 0 1834205 species 593 42490 1 family 0 690 80864 Comamonadaceae 58 4 0 35 47420 Hydrogenophaga genus 2458 1 1 0 1763535 Hydrogenophaga crassostreae species 557 1866 no rank 0 2610897 2 1 Hydrogenophaga sp. PBC 795665 0 species 1051 1842537 0 Hydrogenophaga sp. RAC07 1 815 species 2 0 352450 2 Simplicispira genus 528 1 526 species 2109915 0 Simplicispira sp. SC1-8 1 5 Delftia 0 185 80865 genus 1 5522 1244 species Delftia tsuruhatensis 0 180282 1 2722 no rank 2613839 0 2 1 Delftia sp. HK171 0 1920191 species 1227 1495 species Delftia sp. Cs1-4 0 742013 1 0 80866 Delftia acidovorans 1 1371 species genus 990 1 2 12 238749 0 Diaphorobacter Diaphorobacter polyhydroxybutyrativorans 1546149 0 1 978 species 2989 1 genus 0 18 28065 Rhodoferax 5 1 0 1842727 Rhodoferax koreense species 984 0 1484693 Rhodoferax saidenbachensis 1 656 species 192843 0 Rhodoferax ferrireducens 1 744 species 587 species Rhodoferax antarcticus 0 81479 1 3317 1 genus 0 32 283 Comamonas 4 1723 species 285 0 Comamonas testosteroni 1 species 943 1 1082851 0 Comamonas serinivorans species 619 1 Comamonas kerstersii 0 225992 3 0 219181 5 Ottowia genus 1735 1 0 2645081 1 724 no rank 724 species 1658672 0 Ottowia sp. oral taxon 894 1 1 0 2109914 Ottowia sp. KADR8-3 species 1006 2 201096 2 0 Alicycliphilus genus 1599 1 species 1597 1 Alicycliphilus denitrificans 179636 0 1 6467 genus Variovorax 34072 111 0 5 3093 species Variovorax paradoxus 34073 0 1 no rank 1828 2 663243 0 species 622 1 0 1795631 Variovorax sp. PAMC 28711 1206 species 0 2126319 Variovorax sp. PMC12 1 species 1435 1 436515 0 Variovorax boronicumulans 665874 0 2 656 genus no rank 656 2 2626134 0 444 species Limnohabitans sp. 63ED37-2 1678128 0 1 species 212 1 Limnohabitans sp. 103DPR2 0 1678129 0 2490452 2 1221 genus 635 species 1458425 0 Comamonadaceae bacterium A1 1 586 species Comamonadaceae bacterium B1 0 1458426 1 genus 937 1 0 2678886 1 0 2116657 Melaminivora sp. SC2-7 species 937 2 Candidatus Symbiobacter 0 20 1436289 genus 1 584 564 species Candidatus Symbiobacter mobilis 1436290 0 1 2 22 1649468 0 Melaminivora genus 990 1 no rank 968 1 0 2641902 species 968 1 Melaminivora sp. SC2-9 0 2109913 3 0 10 52972 Polaromonas genus 1738 1 1 2638319 0 no rank 691 0 296591 Polaromonas sp. JS666 1 691 species species 1037 1 Polaromonas naphthalenivorans 216465 0 genus 689 1 2 0 6 364316 Verminephrobacter Verminephrobacter eiseniae 0 364317 1 683 species Ramlibacter 0 16 174951 2 1 1994 genus Ramlibacter tataouinensis 94132 0 1 1978 species 9 Acidovorax 283 12916 0 genus 1 7386 Acidovorax sp. NA3 553814 0 1 549 species Acidovorax ebreus 0 721785 1 968 species 4 0 2684926 no rank 3697 1 Acidovorax sp. JS42 232721 0 species 933 1 0 1858609 Acidovorax sp. T1 species 854 1 Acidovorax sp. RAC01 0 1842533 species 889 0 358220 Acidovorax sp. KKS102 1 1021 species 1 Acidovorax citrulli 0 80869 species 893 996 species Acidovorax avenae 0 80867 1 Gammaproteobacteria 1236 926 0 876 1 454989 class order 3932 1 11 21 135618 0 Methylococcales 10 0 403 98 Methylococcaceae family 3911 1 genus 442 1 0 39773 species 442 1 Methylomicrobium alcaliphilum 0 271065 genus 1 2309 5 Methylomonas 16 416 0 2608980 0 1 798 no rank species 798 1 Methylomonas sp. DH-1 1727196 0 species 438 1 Methylomonas denitrificans 1538553 0 species 336 1 Methylomonas methanica 0 421 1 Methylomonas koyamae 702114 0 species 721 2 Methylococcus 8 413 0 genus 1 659 species 651 1 414 0 Methylococcus capsulatus 1 0 762296 genus 403 403 species Methylovulum psychrotolerans 1704499 0 1 243 Enterobacterales 0 949 91347 order 1 165613 1903414 17 0 Morganellaceae 21 6935 1 family genus 1298 1 3 0 583 21 Proteus 1 585 0 Proteus vulgaris species 391 886 species Proteus mirabilis 0 584 1 1536 1 genus 14 586 0 Providencia 4 1 0 587 Providencia rettgeri species 339 879 species Providencia stuartii 588 0 1 304 species 126385 0 Providencia alcalifaciens 1 Morganella 27 581 0 2 1 1063 genus species 1036 1 Morganella morganii 582 0 genus 283 1 0 637 Arsenophonus symbiont of Lipoptena fortisetosa 634113 0 1 283 species 6 626 18 0 Xenorhabdus genus 1911 1 405 species 0 351679 Xenorhabdus hominickii 1 286 species 351671 0 Xenorhabdus doucetiae 1 40577 0 Xenorhabdus poinarii 1 285 species 1 Xenorhabdus nematophila 628 0 species 287 species 630 1 0 40576 Xenorhabdus bovienii 1 827 genus Photorhabdus 0 6 29487 4 307 species Photorhabdus luminescens 29488 0 1 0 574560 Photorhabdus temperata 1 289 species 225 species 291112 0 Photorhabdus asymbiotica 1 Erwiniaceae 1903409 113 0 28 1 14899 family 1 320 genus Tatumella 10 82986 0 2 Tatumella citrea 53336 0 1 310 species genus 1 408 2 Wigglesworthia 0 1 51228 1 Wigglesworthia glossinidia 51229 0 species 407 genus 2203 1 2 8 32199 0 Buchnera Buchnera aphidicola 9 0 1 2195 species 11 320 53335 0 Pantoea genus 6687 1 628 species 0 553 Pantoea ananatis 1 1 Pantoea alhagi 1891675 0 species 495 407 species Pantoea stewartii 66269 0 1 2630326 0 3 2168 no rank 1 592316 0 Pantoea sp. At-9b species 621 608 species 0 1484158 Pantoea sp. PSNIH1 1 1 Pantoea sp. PSNIH2 1484157 0 species 939 1 Candidatus Pantoea carbekii 0 1235990 species 128 Pantoea rwandensis 1076550 0 1 358 species Pantoea vagans 470934 0 1 1148 species 1035 species group 0 1654067 1 1 Pantoea agglomerans 549 0 species 1035 2 0 2100764 genus 1774 1 665913 0 Pantoea calida species 937 837 species Pantoea gaviniae 665914 0 1 Erwinia 0 112 551 8 1 3394 genus 1 0 338565 Erwinia tasmaniensis species 581 79967 0 Erwinia pyrifoliae 1 319 species species 473 1 Erwinia amylovora 552 0 373 no rank 2622719 0 1 1 215689 0 Erwinia sp. Ejp617 species 373 1 0 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae species 143 species 630 1 Erwinia gerundensis 0 1619313 0 182337 Erwinia billingiae 1 763 species 14 Hafniaceae 0 47 1903412 family 1 6653 genus 4984 1 8 635 305 0 Edwardsiella species 461 1 Edwardsiella ictaluri 0 67780 species 571 1 Edwardsiella anguillarum 0 1821960 1167 species 636 0 Edwardsiella tarda 1 1 93378 0 Edwardsiella hoshinae species 506 1190 no rank 2676541 0 2 0 1578828 Edwardsiella sp. EA181011 1 634 species Edwardsiella sp. LADL05-105 1650654 0 1 556 species 784 species Edwardsiella piscicida 0 1263550 1 1243 1 genus 22 568 0 Hafnia 3 0 569 Hafnia alvei 1 940 species 2621980 0 1 281 no rank 1 1848580 0 Hafnia sp. CBA7124 species 281 14 82982 0 Obesumbacterium 2 379 1 genus 1 Obesumbacterium proteus 82983 0 species 365 family 11274 1 20 0 58 1903410 Pectobacteriaceae genus 1393 1 5 0 84565 51 Sodalis Candidatus Sodalis pierantonius 1486991 0 1 373 species 1 0 1239307 Sodalis praecaptivus species 559 323 species 63612 0 Sodalis glossinidius 1 species 87 1 0 1929246 Sodalis endosymbiont of Henestaris halophilus genus 5083 1 6 0 204037 157 Dickeya 0 204042 Dickeya zeae 1 1161 species 1 Dickeya fangzhongdai 1778540 0 species 849 1 0 204038 Dickeya dadantii species 776 1089444 0 Dickeya solani 1 1494 species 1 Dickeya dianthicola 0 204039 species 646 4050 1 genus 122277 184 0 Pectobacterium 6 2009 species 554 0 Pectobacterium carotovorum 1 1 Pectobacterium atrosepticum 0 29471 species 371 species 662 1 0 2042057 Pectobacterium polaris 1 Pectobacterium wasabiae 0 55208 species 332 1 Pectobacterium parmentieri 1905730 0 species 492 690 1 genus 9 71655 0 Brenneria 2 1109412 0 Brenneria goodwinii 1 681 species family 1 25099 39 Yersiniaceae 0 154 1903411 genus 1 4586 13 Yersinia 0 629 175 315 species Yersinia kristensenii 0 28152 1 1 0 29485 Yersinia rohdei species 264 Yersinia frederiksenii 29484 0 1 879 species 232 species 0 263819 Yersinia aleksiciae 1 1 0 29483 Yersinia aldovae species 247 species 271 1 29486 0 Yersinia ruckeri 3 1649845 0 species group 970 1 0 633 Yersinia pseudotuberculosis species 470 238 species Yersinia pestis 0 632 1 1 Yersinia similis 367190 0 species 262 species 825 1 Yersinia enterocolitica 630 0 200 no rank 0 2653513 1 200 species 1839800 0 Yersinia sp. FDAARGOS_228 1 species 208 1 631 0 Yersinia intermedia 436 1 genus 13 1745211 0 Chania 2 species 423 1 Chania multitudinisentens 0 1639108 1545 1 genus 52 34037 0 Rahnella 4 967 no rank 2635087 0 2 1 Rouxiella sp. ERMR1:05 0 1805933 species 484 0 741091 Rahnella sp. Y9602 1 483 species Rahnella aquatilis 0 34038 1 526 species genus 62 1 0 1565532 Rouxiella 16 613 738 0 Serratia genus 17590 1 1096 species 61651 0 Serratia ficaria 1 1 47917 0 Serratia fonticola species 1184 Serratia marcescens 615 0 1 4714 species 1 Serratia proteamaculans 28151 0 species 552 no rank 6002 8 0 2647522 Serratia sp. FGI94 671990 0 1 993 species species 840 1 Serratia sp. SSNIH1 1758196 0 1 0 488142 Serratia sp. SCBI species 960 418 species 768493 0 Serratia sp. AS13 1 0 104623 Serratia sp. ATCC 39006 1 565 species species 418 1 768490 0 Serratia sp. AS12 1 Serratia sp. FS14 0 1327989 species 996 0 2033438 Serratia sp. MYb239 1 812 species species 1366 1 Serratia plymuthica 82996 0 1 Serratia liquefaciens 0 614 species 860 Serratia rubidaea 61652 0 1 1078 species 1 726 genus Gibbsiella 0 929812 2 2 species 724 1 0 929813 Gibbsiella quercinecans family 383 2 1903416 0 genus 1 383 2 Pragia 1 82984 0 1 Pragia fontium 82985 0 species 382 0 451511 2 602 no rank genus 602 1 2 0 702 21 Plesiomonas 581 species 0 703 Plesiomonas shigelloides 1 98819 1 family 907 543 0 Enterobacteriaceae 116 genus 1878 1 2 5 158483 0 Cedecea 158822 0 Cedecea neteri 1 1873 species 0 1335483 1 762 genus 762 species Shimwellia blattae 563 0 1 2502 1 genus 9 1330546 0 Pluralibacter 3 1 0 61647 Pluralibacter gergoviae species 1609 1 1334193 0 [Enterobacter] lignolyticus species 884 1 0 409304 genus 280 Candidatus Ishikawaella capsulata 0 168169 1 280 species 5 0 36866 no rank 2710 species 636 1 0 891974 Plautia stali symbiont 1 Enterobacteriaceae bacterium ENNIH2 1920109 0 species 521 Enterobacteriaceae bacterium strain FGI 57 0 693444 1 472 species species 482 1 0 2066051 Enterobacteriaceae bacterium ENNIH1 species 599 1 Enterobacteriaceae bacterium ENNIH3 0 1920128 4 Leclercia 0 83654 90 genus 1 1860 no rank 1233 2 0 2627398 1 Leclercia sp. LSNIH1 0 1920114 species 734 0 1920116 Leclercia sp. LSNIH3 1 499 species 0 83655 Leclercia adecarboxylata 1 537 species 22 0 547 798 Enterobacter genus 16240 1 no rank 3856 9 2608935 0 1 Enterobacter sp. HK169 1868135 0 species 231 1 1914861 0 Enterobacter sp. SA187 species 781 477 species 1692238 0 Enterobacter sp. FY-07 1 2051905 0 Enterobacter sp. CRENT-193 1 555 species 198 species Enterobacter sp. Crenshaw 0 1977566 1 species 495 1 1166130 0 Enterobacter sp. R4-368 species 438 1 Enterobacter sp. ODB01 0 1827481 511 species 399742 0 Enterobacter sp. 638 1 1 0 1560339 Enterobacter sp. E20 species 170 species group 11586 12 354276 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1812935 1 409 species species 619 1 Enterobacter cancerogenus 69218 0 species 1406 1 Enterobacter asburiae 0 61645 484 species Enterobacter ludwigii 0 299767 1 550 0 Enterobacter cloacae 1 4593 species 0 1321 158836 Enterobacter hormaechei 3 2229 1 species subspecies 379 1 0 1296536 Enterobacter xiangfangensis 529 subspecies 1812934 0 Enterobacter cloacae complex 'Hoffmann cluster III' 1 no rank 1383 3 0 2757714 species 456 1 Enterobacter cloacae complex bacterium 0 2027919 1 0 1915310 Enterobacter cloacae complex sp. ECNIH7 species 400 species 527 1 2077137 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 Enterobacter kobei 0 208224 species 463 607 genus 579 0 1 species 607 1 Kluyvera intermedia 61648 0 genus 2710 1 5 0 18 1330547 Kosakonia 1 Kosakonia sacchari 1158459 0 species 488 1 Kosakonia cowanii 0 208223 species 791 species 860 1 Kosakonia radicincitans 0 283686 497725 0 Kosakonia oryzae 1 553 species 101 genus 1048757 0 1 1 Candidatus Moranella endobia 1048758 0 species 101 genus 1981 1 4 12 1330545 0 Lelliottia Lelliottia amnigena 61646 0 1 897 species 69220 0 Lelliottia nimipressuralis 1 607 species 1 1907578 0 Lelliottia jeotgali species 465 9471 1 genus 544 265 0 Citrobacter 14 no rank 705 2 2644389 0 1702170 0 Citrobacter sp. FDAARGOS_156 1 392 species 313 species Citrobacter sp. CFNIH10 0 1920110 1 5300 species group 0 1344959 7 species 443 1 0 2077148 Citrobacter freundii complex sp. CFNIH4 753 species 0 67827 Citrobacter werkmanii 1 Citrobacter braakii 0 57706 1 808 species 1 2077147 0 Citrobacter freundii complex sp. CFNIH3 species 367 1 0 2066049 Citrobacter freundii complex sp. CFNIH2 species 443 species 2053 1 Citrobacter freundii 0 546 species 433 1 Citrobacter freundii complex sp. CFNIH9 0 2077149 species 844 1 Citrobacter koseri 545 0 764 species 67825 0 Citrobacter rodentium 1 Citrobacter farmeri 0 67824 1 509 species species 1084 1 0 35703 Citrobacter amalonaticus 561 103 0 Escherichia 5 19910 1 genus Escherichia fergusonii 0 564 1 826 species 1 0 1499973 Escherichia marmotae species 524 Escherichia coli 0 562 1 17286 species species 1171 1 Escherichia albertii 208962 0 191675 0 18 1964 no rank clade 1964 18 0 84563 1906660 0 1 163 genus species 163 1 0 1778264 Candidatus Mikella endobia 133 clade 199891 0 1 133 species 0 1835721 secondary endosymbiont of Trabutina mannipara 1 1 1906659 0 genus 79 1 0 1778263 Candidatus Hoaglandella endobia species 79 761 clade 0 84564 7 1 761 genus Candidatus Blochmannia 0 203804 1 7 243 species Candidatus Blochmannia floridanus 203907 0 1 1 Candidatus Blochmannia chromaiodes 0 251542 species 82 1 Candidatus Blochmannia pennsylvanicus 101534 0 species 94 89 species 251535 0 Candidatus Blochmannia vafer 1 no rank 252 2 711328 0 137 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1505597 1 1505596 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 115 species clade 434 4 0 146507 1 134287 0 secondary endosymbiont of Heteropsylla cubana species 139 1 158 genus Candidatus Hamiltonella 0 1 568987 2 species 157 1 0 138072 Candidatus Hamiltonella defensa 137 species secondary endosymbiont of Ctenarytaina eucalypti 0 1199245 1 genus 1 173 2 Candidatus Doolittlea 0 3 1906657 species 170 1 0 1778262 Candidatus Doolittlea endobia 1 1682492 0 genus 123 123 species Candidatus Tachikawaea gelatinosa 0 1410383 1 98 genus 0 1906661 1 Candidatus Gullanella endobia 1070130 0 1 98 species 3 Salmonella 0 5 590 genus 1 5013 Salmonella bongori 54736 0 1 656 species 4352 species Salmonella enterica 0 28901 1 genus 1 2368 3 Raoultella 0 160674 40 species 727 1 Raoultella planticola 0 575 1 0 54291 Raoultella ornithinolytica species 1601 4 Shigella 0 118 620 genus 1 4260 1 0 2629414 no rank 1913 1 1813821 0 Shigella sp. PAMC 28760 species 1913 989 species Shigella flexneri 623 0 1 1 Shigella dysenteriae 622 0 species 1240 8 413496 122 0 Cronobacter genus 5009 1 1 413503 0 Cronobacter malonaticus species 547 769 species 413501 0 Cronobacter muytjensii 1 species 628 1 413502 0 Cronobacter turicensis 1 Cronobacter dublinensis 0 413497 species 679 596 species Cronobacter condimenti 1163710 0 1 species 1049 1 Cronobacter sakazakii 0 28141 species 619 1 Cronobacter universalis 535744 0 18075 1 genus 542 570 0 Klebsiella 10 3111 species 0 571 Klebsiella oxytoca 1 0 1134687 Klebsiella michiganensis 1 1803 species species 1369 1 Klebsiella aerogenes 0 548 2042 species Klebsiella variicola 244366 0 1 Klebsiella pneumoniae 573 0 1 5532 species no rank 1658 2 2608929 0 928 species Klebsiella sp. M5al 1934254 0 1 1 Klebsiella sp. LTGPAF-6F 0 1905288 species 730 1 Klebsiella quasivariicola 0 2026240 species 871 0 1463165 Klebsiella quasipneumoniae 1 1147 species genus 211 1 0 401618 0 401619 Candidatus Riesia pediculicola 1 211 species 4 0 1934945 19 Immundisolibacterales order 940 1 3 Immundisolibacteraceae 1934946 15 0 family 1 921 genus 906 1 2 0 7 1934947 Immundisolibacter Immundisolibacter cernigliae 0 1810504 1 899 species order 175 1 135615 0 868 0 1 175 family 1 0 869 genus 175 175 species 0 870 Dichelobacter nodosus 1 27 0 28 1706369 Cellvibrionales order 5354 1 768 1 family 13 1706372 0 Halieaceae 4 3 0 1217416 14 Halioglobus genus 755 1 species 373 1 Halioglobus japonicus 0 930805 368 species 930806 0 Halioglobus pacificus 1 family 756 1 7 0 10 1706375 Spongiibacteraceae 252 1 genus 0 3 1434050 Zhongshania 2 species 249 1 1470434 0 Zhongshania aliphaticivorans genus 282 1 2 0 3 1084558 Oceanicoccus 279 species 716816 0 Oceanicoccus sagamiensis 1 2 Spongiibacter 630749 1 0 genus 1 212 211 no rank 0 2631504 1 species 211 1 Spongiibacter sp. IMCC21906 0 1620392 1336 1 family 1706373 11 0 Microbulbiferaceae 5 Microbulbifer 48073 14 0 4 1 1325 genus 435 species 0 1769779 Microbulbifer aggregans 1 species 443 1 252514 0 Microbulbifer thermotolerans 1 Microbulbifer agarilyticus 0 260552 species 433 family 1 2466 10 Cellvibrionaceae 0 1706371 9 2 Simiduia 0 447467 10 genus 1 488 1 Simiduia agarivorans 447471 0 species 478 336 genus 2036021 0 1 Agarilytica rhodophyticola 0 1737490 1 336 species 0 316625 1 253 genus species 253 1 Saccharophagus degradans 86304 0 10 6 0 Cellvibrio 4 1063 1 genus no rank 725 2 0 2624793 Cellvibrio sp. PSBB023 0 1945512 1 279 species 1987723 0 Cellvibrio sp. PSBB006 1 446 species species 332 1 0 155077 Cellvibrio japonicus 1 2425 0 genus 317 1 0 2426 Teredinibacter turnerae species 317 44 Vibrionales 15 135623 0 order 1 17261 family 1 17246 43 Vibrionaceae 81 641 0 4 Aliivibrio 0 4 511678 genus 1 1050 1 Aliivibrio fischeri 0 668 species 363 Aliivibrio salmonicida 40269 0 1 263 species Aliivibrio wodanis 0 80852 1 420 species 657 4 0 Photobacterium 4 1259 1 genus 392 species 74109 0 Photobacterium profundum 1 496 species Photobacterium gaetbulicola 1295392 0 1 367 species Photobacterium damselae 38293 0 1 0 2042066 1 Paraphotobacterium 2 521 1 genus 520 species Paraphotobacterium marinum 0 1755811 1 Vibrio 0 662 215 30 1 14007 genus species 280 1 0 212663 Vibrio tasmaniensis Vibrio vulnificus 672 0 1 1189 species 0 676 Vibrio fluvialis 1 578 species species 381 1 687 0 Vibrio gazogenes 283 species 0 28173 Vibrio nigripulchritudo 1 1 0 1891919 species group 244 244 species 29498 0 Vibrio tubiashii 1 species 692 1 0 190893 Vibrio coralliilyticus 505 species 674 0 Vibrio mimicus 1 391 species Vibrio furnissii 0 29494 1 1 45658 0 Vibrio scophthalmi species 329 707 no rank 2614977 0 2 species 308 1 0 1116375 Vibrio sp. EJY3 1 0 2014742 Vibrio sp. 2521-89 species 399 0 55601 Vibrio anguillarum 1 721 species Vibrio qinghaiensis 0 2025808 1 276 species 553239 0 Vibrio breoganii 1 219 species 5516 species group 0 717610 10 691 0 Vibrio natriegens 1 647 species species 785 1 680 0 Vibrio campbellii 1 Vibrio alginolyticus 0 663 species 1022 Vibrio jasicida 766224 0 1 234 species species subgroup 877 2 0 2315253 Vibrio diabolicus 0 50719 1 567 species Vibrio antiquarius 0 150340 1 310 species 696485 0 Vibrio owensii 1 388 species species 909 1 Vibrio parahaemolyticus 0 670 1 Vibrio harveyi 669 0 species 374 Vibrio rotiferianus 190895 0 1 280 species 0 1534743 Vibrio hyugaensis 1 180 species 0 1435069 Vibrio tritonius 1 296 species 262 species Vibrio tapetis 52443 0 1 666 0 Vibrio cholerae 1 743 species Grimontia 246861 6 0 2 1 328 genus 673 0 Grimontia hollisae 1 322 species 33811 0 2 1459 no rank 530 species gamma proteobacterium HdN1 83406 0 1 0 1248727 endosymbiont of unidentified scaly snail isolate Monju 1 929 species 27182 1 order 92 135622 0 Alteromonadales 104 family 1 716 3 Ferrimonadaceae 7 267892 0 2 Ferrimonas 32 44011 0 genus 1 709 677 species Ferrimonas balearica 44012 0 1 267893 7 0 Idiomarinaceae 6 896 1 family genus 1 889 5 Idiomarina 0 5 135575 species 147 1 Idiomarina piscisalsi 0 1096243 Idiomarina loihiensis 135577 0 1 182 species 0 2614829 2 555 no rank species 311 1 Idiomarina sp. OT37-5b 2100422 0 2055892 0 Idiomarina sp. X4 1 244 species 9691 1 family 0 44 72275 Alteromonadaceae 29 606 genus 0 89404 2 259 no rank 2618684 0 1 0 983545 Glaciecola sp. 4H-3-7+YE-5 1 259 species 1 0 300231 Glaciecola nitratireducens species 347 genus 1 222 2 Agarivorans 0 5 261825 species 217 1 Agarivorans gilvus 680279 0 Marinobacter 0 44 2742 10 1 4678 genus 0 1874317 Marinobacter salinus 1 393 species Marinobacter salarius 1420917 0 1 761 species 1010 species Marinobacter hydrocarbonoclasticus 2743 0 1 1 Marinobacter similis 0 1420916 species 336 species 364 1 Marinobacter psychrophilus 0 330734 1 0 1033846 Marinobacter adhaerens species 456 3 0 83889 no rank 1314 1 Marinobacter sp. CP1 0 1671721 species 472 species 548 1 0 1749259 Marinobacter sp. LQ44 294 species 490759 0 Marinobacter sp. BSs20148 1 2 Lacimicrobium 0 1751872 3 genus 1 492 489 species Lacimicrobium alkaliphilum 0 1526571 1 genus 1 338 2 Paraglaciecola 1621534 4 0 334 species Paraglaciecola psychrophila 0 326544 1 1 3311 genus Alteromonas 33 226 0 10 species 299 1 Alteromonas addita 0 287094 species 266 1 Alteromonas naphthalenivorans 0 715451 1 233316 0 Alteromonas stellipolaris species 429 1 Alteromonas macleodii 28108 0 species 630 314275 0 Alteromonas mediterranea 1 395 species 0 589873 Alteromonas australica 1 370 species 2614992 0 3 889 no rank 277 species 2058133 0 Alteromonas sp. MB-3u-76 1 species 292 1 Alteromonas sp. RW2A1 0 1917158 320 species Alteromonas sp. Mac1 0 1777491 1 3 Psychromonadaceae 267894 4 0 family 1 689 2 0 67572 genus 685 294 no rank 0 2614957 1 0 314282 Psychromonas sp. CNPT3 1 294 species 1 357794 0 Psychromonas ingrahamii species 391 25 0 267890 34 Shewanellaceae family 6704 1 Shewanella 64 22 0 24 1 6670 genus 228 species 0 260364 Shewanella marisflavi 1 0 93973 Shewanella japonica 1 290 species 226 species 0 70864 Shewanella pealeana 1 0 2018305 Shewanella bicestrii 1 172 species Shewanella amazonensis 0 60478 1 534 species 271098 0 Shewanella halifaxensis 1 278 species species 206 1 Shewanella violacea 0 60217 Shewanella oneidensis 0 70863 1 233 species 1 Shewanella loihica 359303 0 species 315 159 species Shewanella piezotolerans 404011 0 1 Shewanella denitrificans 192073 0 1 157 species 0 62322 Shewanella baltica 1 784 species 1 0 225848 Shewanella psychrophila species 377 56812 0 Shewanella frigidimarina 1 328 species species 373 1 0 60961 Shewanella woodyi 6 0 196818 no rank 1244 1 Shewanella sp. ANA-3 94122 0 species 218 Shewanella sp. Pdp11 2059264 0 1 314 species species 165 1 60480 0 Shewanella sp. MR-4 152 species Shewanella sp. MR-7 60481 0 1 species 203 1 0 351745 Shewanella sp. W3-18-1 Shewanella sp. WE21 0 2029986 1 192 species 249 species 271097 0 Shewanella sediminis 1 species 453 1 Shewanella putrefaciens 24 0 25 Pseudoalteromonadaceae 267888 14 0 family 1 6251 Pseudoalteromonas 0 53246 149 24 1 6237 genus 1 Pseudoalteromonas marina 267375 0 species 218 species 184 1 Pseudoalteromonas translucida 166935 0 species 253 1 Pseudoalteromonas arctica 0 394751 1 28107 0 Pseudoalteromonas espejiana species 219 43659 0 Pseudoalteromonas tetraodonis 1 217 species 226 species Pseudoalteromonas issachenkonii 152297 0 1 species 194 1 Pseudoalteromonas haloplanktis 0 228 1 0 161398 Pseudoalteromonas phenolica species 312 species 252 1 Pseudoalteromonas piscicida 0 43662 species 259 1 43657 0 Pseudoalteromonas luteoviolacea species 381 1 Pseudoalteromonas spongiae 0 298657 Pseudoalteromonas tunicata 0 314281 1 261 species species 270 1 Pseudoalteromonas piratica 1348114 0 Pseudoalteromonas aliena 0 247523 1 173 species Pseudoalteromonas atlantica 288 0 1 408 species 1 43658 0 Pseudoalteromonas rubra species 293 1 Pseudoalteromonas agarivorans 0 176102 species 222 no rank 1506 5 194690 0 1 283699 0 Pseudoalteromonas sp. Bsw20308 species 421 198 species Pseudoalteromonas sp. SM9913 0 234831 1 species 215 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 0 1 1761891 0 Pseudoalteromonas sp. 13-15 species 220 1 0 1514074 Pseudoalteromonas sp. NC201 species 452 1 Pseudoalteromonas nigrifaciens 28109 0 species 240 family 1 1876 9 Colwelliaceae 267889 3 0 0 1518149 13 Thalassotalea 2 379 1 genus 1763536 0 Thalassotalea crassostreae 1 366 species 1494 1 genus 28228 5 0 Colwellia 6 0 28229 Colwellia psychrerythraea 1 360 species 806 no rank 196834 0 3 species 268 1 Colwellia sp. PAMC 21821 0 1816219 species 266 1 1816218 0 Colwellia sp. PAMC 20917 Colwellia sp. MT41 0 58049 1 272 species species 323 1 0 1967665 Colwellia beringensis family 267 1 3 0 1 267891 Moritellaceae 2 Moritella 0 2 58050 genus 1 266 species 264 1 80854 0 Moritella viscosa 0 135619 247 Oceanospirillales 67 20571 1 order family 583 1 3 3 224379 0 Hahellaceae 2 Hahella 158481 1 0 genus 1 580 Hahella chejuensis 158327 0 1 579 species family 314 2 0 191033 2 Oleiphilus 0 141450 13 genus 1 314 species 301 1 141451 0 Oleiphilus messinensis 30 137 28256 0 Halomonadaceae family 12457 1 genus 1 692 2 Halotalea 0 5 376488 687 species 0 376489 Halotalea alkalilenta 1 15 Halomonas 0 158 2745 genus 1 7602 species 343 1 Halomonas campaniensis 0 213554 1 1897729 0 Halomonas aestuarii species 811 3680 no rank 2609666 0 8 1 0 1971364 Halomonas sp. GT species 205 1035 species 0 1883416 Halomonas sp. 1513 1 Halomonas sp. 'Soap Lake #7' 1962264 0 1 244 species 989 species 0 2136172 Halomonas sp. SF2003 1 244 species Halomonas sp. 'Soap Lake #6' 1949203 0 1 340 species Halomonas sp. KO116 0 1504981 1 species 211 1 Halomonas sp. GFAJ-1 0 1118153 Halomonas sp. R57-5 0 1610576 1 412 species species 897 1 Halomonas beimenensis 475662 0 508 species Halomonas huangheensis 0 1178482 1 0 115561 Halomonas hydrothermalis 1 618 species Halomonas chromatireducens 507626 0 1 587 species no rank 239 3 114403 0 109 genus 0 1495768 1 1495769 0 Candidatus Evansia muelleri 1 109 species genus 43 1 114185 0 1 0 114186 Candidatus Carsonella ruddii species 43 87 genus 0 235572 1 1 91844 0 Candidatus Portiera aleyrodidarum species 87 genus 1 810 2 Salinicola 404432 20 0 1 Salinicola tamaricis 0 1771309 species 790 genus 1 1037 2 Cobetia 0 38 204286 Cobetia marina 28258 0 1 999 species genus 1 651 2 Chromohalobacter 5 42054 0 646 species Chromohalobacter salexigens 158080 0 1 3 Kushneria 0 4 504090 genus 1 1289 1 157779 0 Kushneria marisflavi species 518 767 species Kushneria konosiri 0 698828 1 0 6 255527 Saccharospirillaceae 5 677 1 family 1 380 genus Gynuella 0 1445504 1 2 379 species 1445505 0 Gynuella sunshinyii 1 genus 291 1 2 0 230494 7 Reinekea species 284 1 0 1336806 Reinekea forsetii family 1 3016 9 Alcanivoracaceae 33 224372 0 0 2025617 14 Ketobacter 2 418 1 genus species 404 1 Ketobacter alkanivorans 1917421 0 6 59753 33 0 Alcanivorax genus 2565 1 571 species Alcanivorax xenomutans 0 1094342 1 1 2638842 0 no rank 203 1 0 1113728 Alcanivorax sp. NBRC 101098 species 203 790 species 0 285091 Alcanivorax dieselolei 1 Alcanivorax pacificus 0 1306787 1 743 species 1 Alcanivorax borkumensis 59754 0 species 225 1 773 family Kangiellaceae 0 6 1920240 6 genus 767 1 5 0 261963 17 Kangiella 309 species 1561924 0 Kangiella profundi 1 species 143 1 0 1144748 Kangiella sediminilitoris Kangiella koreensis 0 261964 1 145 species 153 species 0 914150 Kangiella geojedonensis 1 11 14 135620 0 Oceanospirillaceae family 2504 1 0 188907 1 242 genus 188908 0 Oleispira antarctica 1 242 species 2 Bacterioplanes 0 8 1537406 genus 1 273 1249553 0 Bacterioplanes sanyensis 1 265 species genus 962 1 4 28253 3 0 Marinomonas 285 species 936476 0 Marinomonas posidonica 1 no rank 378 1 0 196814 400668 0 Marinomonas sp. MWYL1 1 378 species Marinomonas mediterranea 0 119864 1 296 species 3 48075 0 Marinobacterium 2 834 1 genus 1 1821621 0 Marinobacterium aestuarii species 831 1 0 187492 genus 179 Thalassolituus oleivorans 0 187493 1 179 species 13 0 118884 no rank 2766 534 clade 0 198346 1 species 534 1 0 186490 Candidatus Baumannia cicadellinicola 0 1608298 7 Thiolapillus 2 454 1 genus 1076588 0 Thiolapillus brandeum 1 447 species 3 349742 0 Sedimenticola 2 455 1 genus species 452 1 Sedimenticola thiotaurini 0 1543721 3 32036 0 clade 444 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 0 species 87 0 1541743 1 106 genus species 106 1 0 386487 Candidatus Ruthia magnifica 410330 0 Calyptogena okutanii thioautotrophic gill symbiont 1 251 species 3 Candidatus Thioglobus 0 655184 2 genus 1 401 143 species Candidatus Thioglobus autotrophicus 1705394 0 1 1 Candidatus Thioglobus singularis 1427364 0 species 256 Pseudohongiella 0 2 1524249 2 1 478 genus 1 Pseudohongiella spirulinae 1249552 0 species 476 Chromatiales 135613 202 0 51 1 16391 order 6564 1 family 57 1046 0 Chromatiaceae 17 genus 213 1 0 1980513 1 1630141 0 Candidatus Nitrosoglobus terrae species 213 1 0 82569 no rank 826 1 1978339 0 Chromatiaceae bacterium 2141T.STBD.0c.01a species 826 0 13724 12 Thiocystis 2 828 1 genus 1 Thiocystis violascens 73141 0 species 816 889 1 genus 0 12 85076 Marichromatium 2 species 877 1 37487 0 Marichromatium purpuratum 156885 12 0 Thioflavicoccus 2 784 1 genus 1 80679 0 Thioflavicoccus mobilis species 772 2 11 53392 0 Thiodictyon genus 1240 1 1229 species 1166950 0 Candidatus Thiodictyon syntrophicum 1 genus 1113 1 2 0 4 85072 Allochromatium 0 1049 Allochromatium vinosum 1 1109 species 1227 2 0 Nitrosococcus 4 614 1 genus species 210 1 0 1229 Nitrosococcus oceani 248 species 133539 0 Nitrosococcus halophilus 1 Nitrosococcus watsonii 0 473531 1 154 species 2 0 451214 no rank 877 877 1 genus 17 1273155 0 Thiohalobacter 2 0 585455 Thiohalobacter thiocyanaticus 1 860 species family 1 6254 18 Ectothiorhodospiraceae 0 59 72276 2 Alkalilimnicola 0 133193 3 genus 1 710 Alkalilimnicola ehrlichii 0 351052 1 707 species genus 1 579 2 Ectothiorhodospira 3 1051 0 1 0 2684909 no rank 576 species 576 1 0 1442136 Ectothiorhodospira sp. BSL-9 597 1 genus 5 85108 0 Halorhodospira 2 Halorhodospira halophila 0 1053 1 592 species genus 574 1 3 0 1335745 10 Spiribacter 1 1335757 0 Spiribacter curvatus species 357 1 Spiribacter salinus 0 1335746 species 207 6 0 70 106633 Thioalkalivibrio genus 3391 1 1 0 2621013 no rank 416 416 species Thioalkalivibrio sp. K90mix 0 396595 1 Thioalkalivibrio sulfidiphilus 1033854 0 1 894 species 1 0 108010 Thioalkalivibrio paradoxus species 704 663 species Thioalkalivibrio versutus 106634 0 1 1 Thioalkalivibrio nitratireducens 186931 0 species 644 2 Acidihalobacter 0 1765964 5 genus 1 344 Acidihalobacter prosperus 0 160660 1 339 species 3 1 1738654 0 Woeseiaceae family 402 1 0 13 1738655 Woeseia 2 401 1 genus species 388 1 Woeseia oceani 1548547 0 1 482 family Granulosicoccaceae 449719 6 0 3 2 437504 1 0 Granulosicoccus genus 476 1 1 Granulosicoccus antarcticus 437505 0 species 475 Halothiobacillaceae 4 255526 0 4 1 657 family Halothiobacillus 109262 5 0 3 1 653 genus 0 927 Halothiobacillus neapolitanus 1 262 species 386 no rank 2636392 0 1 386 species 1860122 0 Halothiobacillus sp. LS2 1 family 1 953 3 Wenzhouxiangellaceae 1676141 3 0 0 15 1676142 Wenzhouxiangella 2 950 1 genus species 935 1 Wenzhouxiangella marina 1579979 0 23 1692040 0 Acidiferrobacterales 6 1536 1 order family 1513 1 5 0 27 1692041 Acidiferrobacteraceae genus 701 1 2 18 1744881 0 Sulfuricaulis 0 1620215 Sulfuricaulis limicola 1 683 species genus 1 785 2 Sulfurifustis 0 17 1692042 species 768 1 1675686 0 Sulfurifustis variabilis 29 Aeromonadales 0 149 135624 order 1 21410 28 Aeromonadaceae 0 84642 197 family 1 21261 2 Tolumonas 12 43947 0 genus 1 407 1 43948 0 Tolumonas auensis species 395 1130 1 genus 347533 10 0 Zobellella 2 1120 species 347534 0 Zobellella denitrificans 1 3 Oceanisphaera 0 5 225143 genus 1 352 0 1416627 Oceanisphaera profunda 1 232 species species 115 1 0 1903694 Oceanisphaera sp. AMac2203 2 129577 2 0 Oceanimonas genus 1020 1 1018 no rank 2636315 0 1 1 511062 0 Oceanimonas sp. GK1 species 1018 18 642 1104 0 Aeromonas genus 18155 1 species 797 1 Aeromonas schubertii 652 0 Aeromonas hydrophila 644 0 1 4193 species 651 0 Aeromonas media 1 632 species species 561 1 648 0 Aeromonas caviae 0 196024 Aeromonas dhakensis 1 756 species 558964 0 Aeromonas aquatica 1 779 species species 1422 1 0 645 Aeromonas salmonicida species 1869 1 0 654 Aeromonas veronii 1 Aeromonas rivipollensis 948519 0 species 776 5266 no rank 257493 0 8 658 species 1920107 0 Aeromonas sp. ASNIH7 1 1 Aeromonas sp. CA23 0 2033032 species 815 586 species 0 1636608 Aeromonas sp. ASNIH3 1 1 Aeromonas sp. ASNIH4 0 1636609 species 734 species 795 1 0 2033033 Aeromonas sp. CU5 species 528 1 Aeromonas sp. ASNIH2 0 1636607 1 Aeromonas sp. ASNIH1 1636606 0 species 502 1 0 1758179 Aeromonas sp. ASNIH5 species 648 order 12420 1 30 8 135625 0 Pasteurellales family 1 12412 29 Pasteurellaceae 0 712 86 6 22 724 0 Haemophilus genus 4443 1 256 species Haemophilus pittmaniae 249188 0 1 1 [Haemophilus] ducreyi 0 730 species 373 945 species Haemophilus influenzae 727 0 1 1 2609962 0 no rank 284 Haemophilus sp. oral taxon 036 0 712310 1 284 species 2563 species Haemophilus parainfluenzae 729 0 1 1 1317 genus Pasteurella 0 3 745 3 326 species Pasteurella dagmatis 754 0 1 988 species 747 0 Pasteurella multocida 1 genus 1153 1 3 0 416916 7 Aggregatibacter 1 0 732 Aggregatibacter aphrophilus species 547 1 Aggregatibacter actinomycetemcomitans 0 714 species 599 1 0 214906 genus 668 1 Histophilus somni 0 731 species 668 0 12 713 Actinobacillus 5 1387 1 genus 718 0 Actinobacillus equuli 1 246 species 1 67854 0 Actinobacillus succinogenes species 318 1 Actinobacillus pleuropneumoniae 715 0 species 577 1 716 0 Actinobacillus suis species 234 1 1047 genus Mannheimia 0 75984 2 4 1 Mannheimia haemolytica 75985 0 species 332 0 85404 Mannheimia varigena 1 434 species 279 no rank 2645054 0 1 species 279 1 Mannheimia sp. USDA-ARS-USMARC-1261 0 1432056 435 genus 697331 0 1 435 species 157673 0 [Mannheimia] succiniciproducens 1 genus 390 1 155493 0 0 750 Gallibacterium anatis 1 390 species 2 476528 1 0 Bibersteinia genus 824 1 47735 0 Bibersteinia trehalosi 1 823 species 662 1 genus 1 2094023 0 Glaesserella 2 738 0 Glaesserella parasuis 1 661 species 53 135614 347 0 Xanthomonadales order 41232 1 38 32033 352 0 Xanthomonadaceae family 33665 1 genus 2523 1 3 0 20 83618 Pseudoxanthomonas species 1750 1 314722 0 Pseudoxanthomonas suwonensis 1 415229 0 Pseudoxanthomonas spadix species 753 5 0 68 55 Lysobacter genus 5064 1 1 Lysobacter antibioticus 0 84531 species 1130 1627 species 0 435897 Lysobacter capsici 1 1 Lysobacter gummosus 0 262324 species 1124 1128 species Lysobacter enzymogenes 0 69 1 Xanthomonas 0 694 338 17 1 13324 genus species 678 1 56454 0 Xanthomonas hortorum 2 0 643453 species group 2610 species 1893 1 Xanthomonas citri 0 346 717 species Xanthomonas fuscans 366648 0 1 1 347 0 Xanthomonas oryzae species 1021 Xanthomonas campestris 0 339 1 1816 species Xanthomonas phaseoli 1985254 0 1 431 species 464 species Xanthomonas euvesicatoria 0 456327 1 1 Xanthomonas perforans 0 442694 species 551 species 1413 1 343 0 Xanthomonas translucens 1 Xanthomonas vesicatoria 0 56460 species 616 1 Xanthomonas fragariae 0 48664 species 291 Xanthomonas alfalfae 366650 0 1 400 species 0 29447 Xanthomonas albilineans 1 527 species 1 56458 0 Xanthomonas sacchari species 961 1 Xanthomonas vasicola 56459 0 species 402 0 53413 Xanthomonas axonopodis 1 449 species 1 0 83614 genus 618 1 Luteimonas sp. 100111 2006110 0 species 618 genus 11345 1 9 0 40323 258 Stenotrophomonas 1 995085 0 species group 5163 species 5163 1 0 40324 Stenotrophomonas maltophilia 792 species 0 216778 Stenotrophomonas rhizophila 1 4 0 196198 no rank 3061 842 species 0 1904944 Stenotrophomonas sp. LM091 1 760 species Stenotrophomonas sp. KCTC 12332 0 1793721 1 1 Stenotrophomonas sp. WZN-1 0 2005046 species 734 1 1827305 0 Stenotrophomonas sp. MYb57 species 725 species 1474 1 Stenotrophomonas acidaminiphila 128780 0 1 0 83617 Stenotrophomonas nitritireducens species 597 1 439 genus Xylella 2370 2 0 2 1 Xylella fastidiosa 0 2371 species 437 7220 1 family 78 1775411 0 Rhodanobacteraceae 14 genus 1 584 2 Frateuria 0 70411 2 Frateuria aurantia 81475 0 1 582 species 1 1160 genus Dokdonella 8 323413 0 2 species 1152 1 323415 0 Dokdonella koreensis 4 Dyella 231454 64 0 genus 1 2987 1 445710 0 Dyella thiooxydans species 1080 1 231455 0 Dyella japonica species 1023 1 Dyella jiangningensis 1379159 0 species 820 genus 1 659 2 Luteibacter 3 242605 0 1 Luteibacter rhizovicinus 242606 0 species 656 0 2233801 1 707 genus 1 0 2021234 Xanthomonadales bacterium D13 species 707 genus 1 1045 2 Rhodanobacter 0 11 75309 Rhodanobacter denitrificans 666685 0 1 1034 species order 891 1 5 1240482 2 0 Orbales family 889 1 4 2 1240483 0 Orbaceae 1 0 1193503 genus 526 species 526 1 0 1196095 Gilliamella apicola 0 1335631 6 Frischella 2 361 1 genus 1 0 1267021 Frischella perrara species 355 0 8 1775403 Nevskiales 4 721 1 order family 710 2 0 2689614 1 710 genus Steroidobacter 0 26 469322 2 species 684 1 0 465721 Steroidobacter denitrificans family 3 1 Sinobacteraceae 0 568386 1 8391 order Thiotrichales 0 5 72273 34 15 Francisellaceae 0 34064 5 family 1 5712 12 Francisella 262 44 0 genus 1 5331 1 Francisella tularensis 263 0 species 1093 Francisella persica 954 0 1 459 species 0 28110 Francisella philomiragia 1 860 species 1 657445 0 Francisella noatunensis species 417 1 0 549298 Francisella halioticida species 269 no rank 529 2 2610885 0 Francisella sp. FSC1006 1547445 0 1 293 species 236 species Francisella sp. MA067296 475375 0 1 0 573569 Francisella sp. TX077308 1 379 species 1 1542390 0 Francisella sp. CA97-1460 species 545 Francisella sp. TX077310 573570 0 1 488 species 248 species 622488 0 Francisella hispaniensis 1 1 376 genus Allofrancisella 1869285 1 0 2 594679 0 Allofrancisella guangzhouensis 1 375 species 14 Piscirickettsiaceae 18 135616 0 family 1 2227 3 Thiomicrospira 933 2 0 genus 1 248 138 species Thiomicrospira aerophila 0 92245 1 species 108 1 Thiomicrospira cyclica 147268 0 genus 1 150 2 Hydrogenovibrio 28884 13 0 137 species Hydrogenovibrio crunogenus 0 39765 1 901 1 genus 0 2 34067 Cycloclasticus 4 no rank 565 2 0 2621467 1 Cycloclasticus sp. PY97N 0 728003 species 251 1 Cycloclasticus sp. P1 385025 0 species 314 1329899 0 Cycloclasticus zancles 1 334 species 1237 0 1 357 genus species 357 1 Piscirickettsia salmonis 1238 0 1 553 genus Methylophaga 0 1 40222 3 species 307 1 Methylophaga nitratireducenticrescens 754476 0 Methylophaga frappieri 754477 0 1 245 species 4 Thiotrichaceae 0 1 135617 family 1 447 genus 249 1 0 1021 species 249 1 288004 0 Beggiatoa leptomitoformis 0 1 40751 Thioploca 2 197 1 genus species 196 1 40754 0 Thioploca ingrica Legionellales 118969 7 0 19 1 4648 order 0 118968 31 Coxiellaceae 4 433 1 family 2 776 0 genus 294 258 species 0 777 Coxiella burnetii 1 no rank 36 1 2676648 0 1 Coxiella endosymbiont of Amblyomma americanum 0 325775 species 36 108 no rank 134284 0 1 1 Coxiella-like endosymbiont 1592897 0 species 108 4208 1 family 0 444 5 Legionellaceae 14 1 465 0 genus 276 276 species Tatlockia micdadei 451 0 1 1 3927 genus Legionella 445 10 0 12 284 species 0 450 Legionella longbeachae 1 255 species Legionella hackeliae 449 0 1 1 Legionella spiritensis 0 452 species 300 276 species 0 28087 Legionella sainthelensi 1 species 1501 1 446 0 Legionella pneumophila species 111 1 0 2005262 Legionella endosymbiont of Polyplax serrata 318 species Legionella oakridgensis 29423 0 1 species 169 1 0 45067 Legionella lansingensis 301 species Legionella waltersii 0 66969 1 1 1867846 0 Legionella clemsonensis species 195 species 207 1 96230 0 Legionella fallonii order 1 101170 128 Pseudomonadales 0 72274 618 42 Moraxellaceae 468 57 0 family 1 13567 11 497 29 0 Psychrobacter genus 1688 1 Psychrobacter alimentarius 0 261164 1 178 species 156 species 334543 0 Psychrobacter arcticus 1 1 0 45610 Psychrobacter urativorans species 153 species 170 1 0 330922 Psychrobacter cryohalolentis 196806 0 6 1002 no rank 143 species 0 1699622 Psychrobacter sp. P2G3 1 198 species Psychrobacter sp. AntiMn-1 1720344 0 1 1 0 571800 Psychrobacter sp. G species 188 1 0 349106 Psychrobacter sp. PRwf-1 species 155 Psychrobacter sp. DAB_AL43B 0 1028416 1 134 species 184 species 1699624 0 Psychrobacter sp. P11G5 1 1232 1 genus 0 13 475 Moraxella 5 species 395 1 Moraxella bovoculi 0 386891 Moraxella osloensis 34062 0 1 393 species species 145 1 0 29433 Moraxella ovis 286 species 480 0 Moraxella catarrhalis 1 25 Acinetobacter 0 123 469 genus 1 10590 1 40216 0 Acinetobacter radioresistens species 398 species 354 1 0 1789224 Acinetobacter larvae 335 species 0 1324350 Acinetobacter equi 1 462 species 40215 0 Acinetobacter junii 1 0 29430 Acinetobacter haemolyticus 1 600 species 368 species Acinetobacter schindleri 108981 0 1 species group 3972 5 909768 0 species 208 1 Acinetobacter lactucae 0 1785128 1 106654 0 Acinetobacter nosocomialis species 441 0 471 Acinetobacter calcoaceticus 1 506 species 1767 species 470 0 Acinetobacter baumannii 1 species 1050 1 0 48296 Acinetobacter pittii no rank 2231 7 196816 0 Acinetobacter sp. LoGeW2-3 0 1808001 1 521 species 0 1407071 Acinetobacter sp. TGL-Y2 1 312 species 0 1646498 Acinetobacter sp. TTH0-4 1 269 species 304 species Acinetobacter sp. ACNIH1 1636603 0 1 1758189 0 Acinetobacter sp. ACNIH2 1 164 species 1 Acinetobacter sp. NCu2D-2 0 1608473 species 311 species 350 1 Acinetobacter sp. SWBY1 2079596 0 300 species Acinetobacter oleivorans 0 1148157 1 Acinetobacter soli 487316 0 1 198 species 1 756892 0 Acinetobacter indicus species 350 0 202950 1 330 species 330 strain Acinetobacter sp. ADP1 0 62977 1 species 307 1 0 106648 Acinetobacter bereziniae species 262 1 Acinetobacter johnsonii 40214 0 86985 1 family 135621 628 0 Pseudomonadaceae 85 2840 286 0 Pseudomonas 80 83484 1 genus species 500 1 0 216142 Pseudomonas rhizosphaerae species group 11673 6 0 136841 2845 species 300 0 Pseudomonas mendocina 1 1 Pseudomonas alcaligenes 0 43263 species 901 4160 species Pseudomonas aeruginosa 0 287 1 2019 species 0 53408 Pseudomonas citronellolis 1 species 791 1 53412 0 Pseudomonas resinovorans 957 species subgroup 0 1232139 1 species 957 1 Pseudomonas furukawaii 1149133 0 518 species Pseudomonas antarctica 0 219572 1 species 615 1 Pseudomonas alcaliphila 101564 0 1234 species Pseudomonas frederiksbergensis 104087 0 1 65741 0 Pseudomonas knackmussii 1 926 species 449 species 157783 0 Pseudomonas cremoricolorata 1 198620 0 Pseudomonas koreensis 1 968 species 12208 species group 136845 0 6 Pseudomonas plecoglossicida 70775 0 1 543 species 1575 species Pseudomonas monteilii 76759 0 1 1 Pseudomonas fulva 47880 0 species 1372 1 0 47885 Pseudomonas oryzihabitans species 798 1 Pseudomonas putida 303 0 species 6748 Pseudomonas mosselii 78327 0 1 1172 species no rank 17329 30 0 196821 499 species 0 2018067 Pseudomonas sp. FDAARGOS_380 1 species 1069 1 Pseudomonas sp. ATCC 13867 1294143 0 species 464 1 0 2083054 Pseudomonas sp. LG1D9 1 0 1827300 Pseudomonas sp. MYb193 species 342 species 676 1 Pseudomonas sp. St29 0 1500687 1 Pseudomonas sp. Os17 0 1500686 species 699 species 553 1 Pseudomonas sp. S-6-2 1931241 0 species 722 1 Pseudomonas sp. MRSN12121 0 1611770 Pseudomonas sp. UW4 0 1207075 1 475 species 2083055 0 Pseudomonas sp. LH1G9 1 708 species 421 species Pseudomonas sp. HLS-6 0 2049589 1 2067572 0 Pseudomonas sp. NC02 1 526 species Pseudomonas sp. URMO17WK12:I11 1283291 0 1 1023 species Pseudomonas sp. XWY-1 2069256 0 1 550 species species 580 1 Pseudomonas sp. CCOS 191 1649877 0 1 0 1659194 Pseudomonas sp. GR 6-02 species 409 519 species 0 1534110 Pseudomonas sp. DR 5-09 1 1 Pseudomonas sp. VLB120 69328 0 species 452 species 641 1 1259844 0 Pseudomonas sp. FGI182 species 613 1 1636610 0 Pseudomonas sp. PONIH3 0 1981174 Pseudomonas sp. M30-35 1 335 species species 448 1 Pseudomonas sp. JY-Q 0 1338689 1 0 2083053 Pseudomonas sp. SWI44 species 346 1898684 0 Pseudomonas sp. LPH1 1 652 species 1 0 1028989 Pseudomonas sp. StFLB209 species 820 species 557 1 Pseudomonas sp. CC6-YY-74 0 1930532 0 1856685 Pseudomonas sp. TCU-HL1 1 925 species 1 Pseudomonas sp. TKP 0 1415630 species 413 532 species Pseudomonas sp. SWI36 2083052 0 1 species 360 1 2083051 0 Pseudomonas sp. SWI6 species 554 1 0 237609 Pseudomonas alkylphenolica Pseudomonas parafulva 0 157782 1 1029 species species group 5547 2 0 136846 Pseudomonas balearica 74829 0 1 643 species 578833 0 1 4904 species subgroup Pseudomonas stutzeri 316 0 1 4904 species 3878 species group 136842 0 2 Pseudomonas chlororaphis 0 587753 1 3048 species species 830 1 Pseudomonas fragi 0 296 1 1788301 0 Pseudomonas versuta species 512 Pseudomonas psychrotolerans 0 237610 1 802 species 450 species 1583341 0 Pseudomonas cerasi 1 426 species 0 244566 Pseudomonas lurida 1 species group 8359 8 136849 0 494 species Pseudomonas avellanae 0 46257 1 3782 species subgroup 0 251695 1 Pseudomonas syringae 317 0 1 3782 species no rank 489 1 2775504 0 1 0 1206777 Pseudomonas sp. Lz4W species 489 species 553 1 Pseudomonas viridiflava 33069 0 949 species Pseudomonas syringae group genomosp. 3 251701 0 1 1678 species subgroup 251698 0 2 868 species Pseudomonas amygdali 47877 0 1 species 810 1 0 29438 Pseudomonas savastanoi species 414 1 0 36746 Pseudomonas cichorii 1 Pseudomonas brassicacearum 0 930166 species 1227 414 species 0 1853130 Pseudomonas silesiensis 1 1 0 312306 Pseudomonas entomophila species 432 10594 species group 136843 0 9 496 species 0 200450 Pseudomonas trivialis 1 species 418 1 Pseudomonas poae 200451 0 species 6119 1 0 294 Pseudomonas fluorescens 1 0 47878 Pseudomonas azotoformans species 812 76761 0 Pseudomonas veronii 1 481 species 76758 0 Pseudomonas orientalis 1 418 species 1 Pseudomonas protegens 380021 0 species 782 Pseudomonas mandelii 75612 0 1 554 species 514 species Pseudomonas corrugata 0 47879 1 3 0 351 subfamily 2643 genus 2643 1 3 352 20 0 Azotobacter 1632 species Azotobacter chroococcum 353 0 1 354 0 Azotobacter vinelandii 1 991 species genus 230 1 0 1849530 1 Oblitimonas alkaliphila 0 1697053 species 230 subphylum 132153 197 68525 0 127 0 28221 213 Deltaproteobacteria class 89778 1 order 731 1 5 0 213113 1 Desulfurellales family 730 4 0 117942 2 0 33001 4 Desulfurella genus 482 1 33002 0 Desulfurella acetivorans 1 478 species 0 3 84404 Hippea 2 248 1 genus species 245 1 Hippea maritima 0 84405 1 1514 order Desulfarculales 453227 8 0 4 3 453228 18 0 Desulfarculaceae family 1506 1 1 1488 genus Desulfarculus 10 453229 0 2 1 Desulfarculus baarsii 453230 0 species 1478 19 0 50 213118 Desulfobacterales order 7285 1 9 0 213119 19 Desulfobacteraceae family 3950 1 924 1 genus 218207 7 0 Desulfatibacillum 2 Desulfatibacillum alkenivorans 0 259354 1 917 species 0 28222 1 612 genus 1 0 28223 Desulfobacula toluolica species 612 0 2295 3 Desulfobacterium 2 543 1 genus 1 2296 0 Desulfobacterium autotrophicum species 540 3 Desulfococcus 0 7 896 genus 1 1852 species 981 1 Desulfococcus multivorans 897 0 864 species 181663 0 Desulfococcus oleovorans 1 Desulfobulbaceae 0 213121 14 9 1 3285 family genus 1 1176 2 Desulfobulbus 0 8 893 species 1168 1 0 1986146 Desulfobulbus sp. ORNL genus 1 652 2 Desulfotalea 109168 2 0 650 species 0 84980 Desulfotalea psychrophila 1 1 399 genus Desulfocapsa 53318 3 0 2 396 species Desulfocapsa sulfexigens 65555 0 1 genus 1044 1 2 0 4 427922 Desulfurivibrio species 1040 1 Desulfurivibrio alkaliphilus 427923 0 order 19352 1 24 0 232 69541 Desulfuromonadales 6875 1 family 102 213421 0 Desulfuromonadaceae 9 0 18 55 Pelobacter 5 4046 1 genus 1375 species 0 29543 Pelobacter propionicus 1 Pelobacter acetylenicus 0 29542 1 901 species 630 no rank 2620299 0 1 species 630 1 1842532 0 Pelobacter sp. SFB93 Pelobacter carbinolicus 0 19 1 1085 species 15 890 0 Desulfuromonas 3 2727 1 genus Desulfuromonas soudanensis 0 1603606 1 1236 species no rank 1476 1 0 2614637 1 Desulfuromonas sp. DDH964 0 1823759 species 1476 family 1 12245 14 Geobacteraceae 0 213422 95 1029 1 genus 392332 4 0 Geoalkalibacter 2 1 Geoalkalibacter subterraneus 0 483547 species 1025 genus 1 11121 11 Geobacter 28231 155 0 1152 species Geobacter bemidjiensis 0 225194 1 Geobacter metallireducens 0 28232 1 1081 species no rank 2874 2 0 2627627 species 1148 1 Geobacter sp. M21 443144 0 443143 0 Geobacter sp. M18 1 1726 species Geobacter uraniireducens 351604 0 1 782 species 780 species 313985 0 Geobacter lovleyi 1 1203471 0 Geobacter daltonii 1 853 species 1 345632 0 Geobacter pickeringii species 1032 1311 species 1340425 0 Geobacter anodireducens 1 species 1101 1 Geobacter sulfurreducens 35554 0 38 Myxococcales 0 29 390 order 1 31426 6529 suborder 80812 0 8 0 10 1055686 Sandaracinaceae 3 1372 1 family 1362 1 genus 0 1055688 9 Sandaracinus 2 1 Sandaracinus amylolyticus 0 927083 species 1353 family 5157 1 5 24 49 0 Polyangiaceae Chondromyces 50 10 0 2 1 1033 genus Chondromyces crocatus 0 52 1 1023 species 0 26 39643 Sorangium 2 4100 1 genus Sorangium cellulosum 56 0 1 4074 species suborder 22962 26 80811 0 9 Archangiaceae 39 114 0 family 1 6370 1 1373 genus Stigmatella 40 7 0 2 1366 species Stigmatella aurantiaca 41 0 1 1644 1 genus 47 20 0 Archangium 2 1 0 48 Archangium gephyra species 1624 14 42 0 Cystobacter 2 1667 1 genus 1653 species Cystobacter fuscus 0 43 1 genus 1 1572 2 Melittangium 0 44 17 Melittangium boletus 83453 0 1 1555 species 5 Anaeromyxobacteraceae 1524215 45 0 family 1 4843 1 4798 genus Anaeromyxobacter 161492 110 0 4 2 0 2620896 no rank 2487 1 404589 0 Anaeromyxobacter sp. Fw109-5 species 1286 1 Anaeromyxobacter sp. K 0 447217 species 1201 2201 species 161493 0 Anaeromyxobacter dehalogenans 1 3 Vulgatibacteraceae 1524213 5 0 family 1 1044 55 1524214 0 Vulgatibacter 2 1039 1 genus 984 species 0 1391653 Vulgatibacter incomptus 1 Myxococcaceae 0 53 31 9 1 10705 family genus 7094 1 5 32 240 0 Myxococcus 1429 species Myxococcus hansupus 0 1297742 1 1 Myxococcus xanthus 34 0 species 1232 species 1236 1 0 83455 Myxococcus stipitatus species 2957 1 Myxococcus fulvus 0 33 genus 3558 1 3 0 83461 51 Corallococcus 0 35 Myxococcus macrosporus 1 1512 species Corallococcus coralloides 184914 0 1 1995 species 1545 suborder 0 224462 3 family 1 1545 3 Kofleriaceae 0 224464 7 genus 1538 1 2 0 162027 14 Haliangium Haliangium ochraceum 0 80816 1 1524 species Syntrophobacterales 213462 11 0 10 1 2091 order 213465 6 0 Syntrophobacteraceae 3 843 1 family 2 29526 2 0 Syntrophobacter genus 837 1 1 0 119484 Syntrophobacter fumaroxidans species 835 1237 1 family 213468 3 0 Syntrophaceae 6 1 2357 0 genus 407 species 407 1 Desulfomonile tiedjei 2358 0 genus 293 1 2 0 60892 1 Desulfobacca 60893 0 Desulfobacca acetoxidans 1 292 species 534 1 genus 0 3 43773 Syntrophus 2 1 0 316277 Syntrophus aciditrophicus species 531 26 213115 226 0 Desulfovibrionales order 27166 1 family 1 571 3 Desulfohalobiaceae 0 213117 2 2 0 45662 3 Desulfohalobium genus 569 1 1 Desulfohalobium retbaense 0 45663 species 566 family 2375 1 4 43 213116 0 Desulfomicrobiaceae 2332 1 genus 0 17 898 Desulfomicrobium 3 species 1246 1 Desulfomicrobium baculatum 899 0 species 1069 1 0 132132 Desulfomicrobium orale 18 Desulfovibrionaceae 0 161 194924 family 1 23994 genus 1 553 2 Lawsonia 41707 3 0 species 550 1 Lawsonia intracellularis 0 29546 17060 1 genus 0 872 168 Desulfovibrio 9 Desulfovibrio desulfuricans 876 0 1 3183 species 1677 species 184917 0 Desulfovibrio magneticus 1 species 4098 1 881 0 Desulfovibrio vulgaris 2593640 0 1 1134 no rank Desulfovibrio sp. G11 631220 0 1 1134 species 1 0 44742 Desulfovibrio fairfieldensis species 2350 1 Candidatus Desulfovibrio trichonymphae 1725232 0 species 503 1 58180 0 Desulfovibrio alaskensis species 1223 1 0 901 Desulfovibrio piger species 2724 genus 1170 1 0 2582840 1 Desulfovibrio africanus 873 0 species 1170 0 28 2035811 Pseudodesulfovibrio 4 4126 1 genus 1 0 1716143 Pseudodesulfovibrio indicus species 1857 species 1397 1 Pseudodesulfovibrio aespoeensis 182210 0 1 Pseudodesulfovibrio profundus 57320 0 species 844 genus 924 1 0 2794998 Desulfovibrio salexigens 880 0 1 924 species class 42375 1 70 34 29547 0 Epsilonproteobacteria 0 235899 4 764 order 322 family 0 2795691 1 genus 322 1 0 269258 no rank 322 1 0 2624044 1 0 387092 Nitratiruptor sp. SB155-2 species 322 0 224467 1 Nautiliaceae 3 442 1 family genus 1 441 2 Nautilia 0 191291 8 species 433 1 0 244787 Nautilia profundicola 1 41577 order Campylobacterales 458 213849 0 65 Campylobacteraceae 0 1915 72294 41 1 34795 family 1 1926 genus Sulfurospirillum 0 21 57665 9 1 194424 0 Sulfurospirillum halorespirans species 189 Sulfurospirillum deleyianum 0 65553 1 145 species Sulfurospirillum cavolei 366522 0 1 290 species 3 0 2618290 no rank 896 Sulfurospirillum sp. JPD-1 220622 0 1 195 species 1 Sulfurospirillum sp. SL2-1 0 1986224 species 273 428 species Sulfurospirillum sp. UCH001 0 1581011 1 0 66821 Sulfurospirillum multivorans 1 197 species Sulfurospirillum barnesii 0 44674 1 188 species 5 2321108 0 no rank 4592 3 28196 11 0 Arcobacter genus 2237 1 1341 species 28197 0 Arcobacter butzleri 1 885 species Arcobacter nitrofigilis 0 28199 1 1 2321187 0 genus 1050 1050 species Arcobacter sp. LPB0137 1850254 0 1 no rank 1305 1 0 2321207 1305 species 944547 0 Arcobacter sp. L 1 26 Campylobacter 0 321 194 genus 1 26362 520 species Campylobacter concisus 199 0 1 0 206 Campylobacter sputorum 1 846 species 1017 species 0 75658 Campylobacter lanienae 1 species 302 1 Campylobacter insulaenigrae 260714 0 1 0 195 Campylobacter coli species 9822 1 0 200 Campylobacter curvus species 465 1 0 28898 Campylobacter helveticus species 155 1 374106 0 Campylobacter cuniculorum species 313 species 364 1 497724 0 Campylobacter subantarcticus 824 0 Campylobacter gracilis 1 412 species 1 522485 0 Campylobacter avium species 268 0 196 Campylobacter fetus 1 904 species no rank 1369 4 0 2593542 species 295 1 Campylobacter sp. RM12175 0 1660076 species 458 1 0 1500960 Campylobacter sp. RM16704 1 Campylobacter sp. RM6137 0 1660073 species 280 1 Campylobacter sp. RM8964 1660074 0 species 336 201 0 Campylobacter lari 1 1264 species 366 species 488546 0 Campylobacter peloridis 1 species 204 1 1244531 0 Campylobacter iguaniorum 1 197 0 Campylobacter jejuni species 5168 317 species Campylobacter hominis 0 76517 1 540 species 0 1965231 Campylobacter pinnipediorum 1 521 species 198 0 Campylobacter hyointestinalis 1 1 Campylobacter ureolyticus 0 827 species 410 0 1031542 Campylobacter volucris 1 494 species 0 2771472 5 1567 family 3 Sulfurovum 5 265570 0 genus 1 808 206403 0 Sulfurovum lithotrophicum 1 427 species no rank 376 1 2646778 0 species 376 1 0 387093 Sulfurovum sp. NBC37-1 2 0 269260 1 Nitratifractor genus 759 1 species 758 1 0 269261 Nitratifractor salsuginis 0 2771471 4 979 family genus 260 1 0 286130 0 148813 Sulfuricurvum kujiense 1 260 species 3 Sulfurimonas 1 202746 0 genus 1 719 273 species Sulfurimonas denitrificans 39766 0 1 1 Sulfurimonas autotrophica 202747 0 species 445 1 3778 family Helicobacteraceae 72293 27 0 14 209 10 0 Helicobacter 12 3586 1 genus species 197 1 0 1591088 Helicobacter himalayensis species 192 1 Helicobacter cinaedi 213 0 species 111 1 212 0 Helicobacter acinonychis no rank 217 1 0 2593540 0 222136 Helicobacter sp. MIT 01-6242 1 217 species 415 species Helicobacter cetorum 138563 0 1 1 0 32025 Helicobacter hepaticus species 230 105 species 0 214 Helicobacter felis 1 1 76936 0 Helicobacter typhlonius species 169 1 Helicobacter mustelae 217 0 species 194 0 210 Helicobacter pylori 1 1442 species 0 37372 Helicobacter bilis 1 304 species genus 165 1 843 0 1 Wolinella succinogenes 0 844 species 165 0 2 580370 Zetaproteobacteria 5 919 1 class 0 10 580371 Mariprofundales 4 917 1 order 3 0 5 580372 Mariprofundaceae family 907 1 902 genus 0 377315 2 Mariprofundus aestuarium 1921086 0 1 426 species species 476 1 0 1921087 Mariprofundus ferrinatatus 10 0 1553900 7 Oligoflexia class 2285 1 4 1 2024979 0 Bacteriovoracales order 790 1 403 family 0 263369 1 0 146784 1 403 genus Bacteriovorax stolpii 0 960 1 403 species 1 386 family Halobacteriovoraceae 0 1652132 1 2 385 genus 0 1652133 1 species 385 1 Halobacteriovorax marinus 97084 0 5 Bdellovibrionales 0 11 213481 order 1 1488 0 7 213483 Bdellovibrionaceae 4 1477 1 family genus 1 1470 3 Bdellovibrio 0 958 30 1 Bdellovibrio exovorus 453816 0 species 203 Bdellovibrio bacteriovorus 0 959 1 1237 species class 1 285645 552 Alphaproteobacteria 28211 910 0 Rickettsiales 766 47 0 52 1 8265 order family 3338 1 21 0 4 942 Anaplasmataceae 0 952 8 1493 tribe 8 Wolbachia 0 953 80 genus 1 1493 7 0 2640676 no rank 1413 170 species 0 66084 Wolbachia sp. wRi 1 1 Wolbachia endosymbiont of Onchocerca ochengi 100901 0 species 67 species 124 1 80849 0 Wolbachia endosymbiont of Brugia malayi 1 Wolbachia endosymbiont of Onchocerca volvulus 0 77551 species 92 Wolbachia endosymbiont of Drosophila simulans 0 77038 1 517 species 294 species Wolbachia endosymbiont of Drosophila melanogaster 163164 0 1 species 149 1 Wolbachia endosymbiont of Cimex lectularius 246273 0 233 genus 33993 0 3 0 950 Neorickettsia risticii 1 50 species 114 species Neorickettsia helminthoeca 0 33994 1 0 951 Neorickettsia sennetsu 1 69 species Ehrlichia 943 1 0 6 1 1252 genus species group 1070 4 0 106178 species 285 1 0 944 Ehrlichia canis species 159 1 Ehrlichia chaffeensis 945 0 species 473 1 0 779 Ehrlichia ruminantium 1 0 35795 Ehrlichia muris species 153 no rank 181 1 0 106181 1 Ehrlichia sp. HF 391036 0 species 181 356 genus 768 0 3 species group 158 1 0 106179 1 Anaplasma phagocytophilum 0 948 species 158 Anaplasma marginale 0 770 1 136 species 62 species 769 0 Anaplasma centrale 1 27 Rickettsiaceae 775 3 0 family 1 4198 tribe 3966 25 33988 0 23 Rickettsia 0 780 377 genus 1 3401 17 114277 0 species group 1921 1 109232 0 Rickettsia monacensis species 74 species 100 1 Rickettsia africae 35788 0 74 species Rickettsia amblyommatis 0 33989 1 1 0 33991 Rickettsia montanensis species 72 species 33 1 Rickettsia conorii 781 0 0 42862 Rickettsia felis 1 354 species 1 47589 0 Rickettsia peacockii species 148 241 species Rickettsia akari 786 0 1 1 0 783 Rickettsia rickettsii species 88 1105106 0 Rickettsia philipii 1 65 species 35792 0 Rickettsia parkeri 1 15 species 1 Rickettsia australis 0 787 species 257 species 77 1 0 35794 Rickettsia slovaca species 81 1 0 35790 Rickettsia japonica Rickettsia rhipicephali 33992 0 1 121 species 71 species Rickettsia massiliae 35791 0 1 50 species Rickettsia heilongjiangensis 0 226665 1 1129742 0 2 532 species group Rickettsia canadensis 788 0 1 243 species Rickettsia bellii 33990 0 1 289 species 1 114295 0 no rank 234 species 234 1 337479 0 Rickettsia endosymbiont of Bemisia tabaci 114292 0 2 337 species group 167 species Rickettsia typhi 0 785 1 170 species Rickettsia prowazekii 0 782 1 genus 565 1 2 69474 2 0 Orientia 1 Orientia tsutsugamushi 0 784 species 563 1 2115980 0 genus 229 species 229 1 2115978 0 Candidatus Phycorickettsia trachydisci 1 235 family Candidatus Midichloriaceae 4 1328881 0 2 1 0 411566 genus 231 1 Candidatus Midichloria mitochondrii 234827 0 species 231 447 no rank 1699067 0 1 447 species 0 1528098 Rickettsiales bacterium Ac37b 1 1483 order 2800060 0 5 5 Hyphomonadaceae 13 69657 0 family 1 1483 Hyphomonas 0 85 22 3 1 1079 genus species 585 1 Hyphomonas neptunium 0 81032 no rank 472 1 0 2630699 Hyphomonas sp. Mor2 0 1906738 1 472 species 2723 0 1 391 genus 391 species 2724 0 Hirschia baltica 1 538 order 0 2800059 2 538 family 2800061 0 2 genus 1 538 2 Maricaulis 0 13 74317 species 525 1 Maricaulis maris 0 74318 64 0 341 204441 Rhodospirillales order 38287 1 Rhodospirillaceae 0 278 41295 28 1 22258 family 5 0 123 13134 Magnetospirillum genus 4959 1 1191 species Magnetospirillum gryphiswaldense 55518 0 1 0 84159 Magnetospirillum magneticum 1 1106 species 2 2617991 0 no rank 2539 1370 species 1663591 0 Magnetospirillum sp. XM-1 1 1 0 1639348 Magnetospirillum sp. ME-1 species 1169 Rhodospirillum 1081 27 0 3 1 2175 genus Rhodospirillum centenum 0 34018 1 1257 species 1085 0 Rhodospirillum rubrum 1 891 species genus 1076 1 2 171436 18 0 Tistrella 1058 species Tistrella mobilis 171437 0 1 genus 1035 1 2 0 1543704 9 Niveispirillum 1026 species Niveispirillum cyanobacteriorum 0 1612173 1 genus 258 1 1804663 0 258 species Haematospirillum jordaniae 1549855 0 1 genus 1 8128 5 Azospirillum 0 191 138 1657 species 528244 0 Azospirillum thiophilum 1 species 791 1 0 1226968 Azospirillum humicireducens 2503 species 0 192 Azospirillum brasilense 1 species 3039 1 Azospirillum lipoferum 0 193 1182780 0 1 638 genus no rank 638 1 0 2685734 1 Magnetospira sp. QH-2 1288970 0 species 638 0 1612157 4 Pararhodospirillum 2 583 1 genus 1084 0 Pararhodospirillum photometricum 1 579 species 0 168934 6 Thalassospira 3 1461 1 genus species 711 1 220697 0 Thalassospira xiamenensis 2048283 0 Thalassospira sp. CSC3H3 1 744 species genus 1 1406 2 Nitrospirillum 0 10 1543705 0 28077 Nitrospirillum amazonense 1 1396 species genus 261 1 0 1263978 261 species 0 1263979 Candidatus Endolissoclinum faulkneri 1 0 433 226 Acetobacteraceae 35 15688 1 family 3 Gluconobacter 76 441 0 genus 1 1686 1 Gluconobacter oxydans 442 0 species 1108 502 species Gluconobacter albidus 0 318683 1 genus 472 1 2 0 320496 8 Neoasaia species 464 1 320497 0 Neoasaia chiangmaiensis genus 1 670 2 Gluconacetobacter 0 5 89583 species 665 1 33996 0 Gluconacetobacter diazotrophicus 1 1382 genus Acidiphilium 42 522 0 3 species 659 1 0 62140 Acidiphilium multivorum 681 species 524 0 Acidiphilium cryptum 1 1 414 genus Parasaccharibacter 0 2 1602345 2 species 412 1 0 1510841 Parasaccharibacter apium 3 Roseomonas 125216 47 0 genus 1 2019 0 2617492 1 969 no rank species 969 1 Roseomonas sp. FDAARGOS_362 0 2018065 1 Roseomonas gilardii 0 257708 species 1003 2 Asaia 0 91914 5 genus 1 584 species 579 1 0 91915 Asaia bogorensis 5 0 130 1434011 Komagataeibacter genus 2692 1 1177712 0 Komagataeibacter medellinensis 1 398 species 1 Komagataeibacter europaeus 0 33995 species 452 Komagataeibacter nataicola 265960 0 1 720 species species 992 1 28448 0 Komagataeibacter xylinus genus 1 4098 8 Acetobacter 0 120 434 0 446692 Acetobacter senegalensis 1 574 species 65959 0 Acetobacter pomorum 1 353 species 438 0 Acetobacter pasteurianus 1 1227 species subgenus 557 1 151157 0 435 0 Acetobacter aceti 1 557 species Acetobacter oryzifermentans 0 1633874 1 210 species 1 Acetobacter tropicalis 0 104102 species 540 Acetobacter persici 0 1076596 1 517 species 2 0 12 364409 Granulibacter genus 1027 1 364410 0 Granulibacter bethesdensis 1 1015 species 418 1 genus 153497 3 0 Kozakia 2 415 species 0 153496 Kozakia baliensis 1 no rank 2753 8 0 82117 2 Micavibrio 213485 2 0 genus 1 483 1 Micavibrio aeruginosavorus 349221 0 species 481 clade 325 2 62654 0 2 Candidatus Puniceispirillum 0 4 767891 genus 1 325 1 Candidatus Puniceispirillum marinum 767892 0 species 321 1148 1 genus 1632780 31 0 Phreatobacter 2 1117 species 1868589 0 Phreatobacter sp. S-12 1 Polymorphum 0 991903 12 2 1 797 genus 1 Polymorphum gilvum 0 991904 species 785 Sphingomonadales 204457 403 0 82 1 45418 order 33752 1 family 41297 472 0 Sphingomonadaceae 59 genus 787 1 2 13 150203 0 Blastomonas 1 0 2626550 no rank 774 species 774 1 1842535 0 Blastomonas sp. RAC04 1 0 2685927 genus 509 species 509 1 Sphingomonas sp. JJ-A5 1921510 0 genus 1 783 2 Rhizorhabdus 6 1649486 0 species 777 1 Rhizorhabdus dicambivorans 1850238 0 2 0 72173 12 Citromicrobium genus 713 1 2630544 0 1 701 no rank 701 species 0 1634516 Citromicrobium sp. JL477 1 10 Sphingopyxis 113 165697 0 genus 1 6086 580 species 33052 0 Sphingopyxis terrae 1 species 563 1 117207 0 Sphingopyxis alaskensis no rank 2114 4 0 2614943 species 508 1 Sphingopyxis sp. 113P3 0 292913 Sphingopyxis sp. LPB0140 1913578 0 1 299 species 1 Sphingopyxis sp. MG 0 1866325 species 725 Sphingopyxis sp. QXT-31 0 1357916 1 582 species 768 species 267128 0 Sphingopyxis granuli 1 Sphingopyxis macrogoltabida 0 33050 1 1308 species species 640 1 0 1515612 Sphingopyxis fribergensis 2709685 0 1 363 genus Sphingorhabdus flavimaris 0 266812 1 363 species genus 3201 1 5 0 165696 55 Novosphingobium Novosphingobium aromaticivorans 48935 0 1 745 species 1 205844 0 Novosphingobium pentaromativorans species 669 0 2644732 1 664 no rank 1 Novosphingobium sp. PP1Y 0 702113 species 664 1068 species Novosphingobium resinovorum 158500 0 1 15 Sphingomonas 0 241 13687 genus 1 10456 1 Sphingomonas hengshuiensis 1609977 0 species 793 93064 0 Sphingomonas koreensis 1 695 species species 676 1 Sphingomonas panacis 0 1560345 789 species 0 397260 Sphingomonas sanxanigenens 1 196159 0 6 4228 no rank species 644 1 0 1030157 Sphingomonas sp. KC8 0 745310 Sphingomonas sp. MM-1 1 782 species 710 species 1938607 0 Sphingomonas sp. LM7 1 717 species Sphingomonas sp. Cra20 1327635 0 1 1 Sphingomonas sp. NIC1 0 1961362 species 673 species 702 1 1390395 0 Sphingomonas sp. LK11 1 152682 0 Sphingomonas melonis species 624 Sphingomonas taxi 0 1549858 1 601 species 2 160791 889 0 Sphingomonas wittichii species 1809 1 920 strain 1283312 0 Sphingomonas sp. DC-6 1 2 Zymomonas 0 541 9 genus 1 965 542 0 Zymomonas mobilis 1 956 species 15 Sphingobium 114 165695 0 genus 1 8577 716 species 332055 0 Sphingobium indicum 1 species 570 1 1673076 0 Sphingobium hydrophobicum 1 332056 0 Sphingobium japonicum species 586 3363 no rank 2611147 0 6 Sphingobium sp. TKS 1315974 0 1 679 species 650 species Sphingobium sp. YBL2 484429 0 1 1 Sphingobium sp. EP60837 1855519 0 species 425 646 species 0 627192 Sphingobium sp. SYK-6 1 1843368 0 Sphingobium sp. RAC03 1 496 species 1 0 407020 Sphingobium sp. MI1205 species 467 0 46429 Sphingobium chlorophenolicum 1 775 species 1 1332080 0 Sphingobium baderi species 549 0 13690 Sphingobium yanoikuyae 1 732 species 1 Sphingobium cloacae 120107 0 species 670 species 502 1 Sphingobium herbicidovorans 76947 0 3 Sphingorhabdus 0 1434046 28 genus 1 840 no rank 812 2 2614947 0 Sphingorhabdus sp. M41 1806885 0 1 428 species 1 2077182 0 Sphingorhabdus sp. YGSMI21 species 384 1 11263 family Erythrobacteraceae 0 158 335929 22 1192 genus 0 2800681 2 Erythrobacter atlanticus 1648404 0 1 443 species 1 Erythrobacter gangjinensis 0 502682 species 749 1 2800682 0 genus 794 1 Altererythrobacter namhicola 0 645517 species 794 6 2800788 0 no rank 3347 1494 1 genus 0 1111 38 Porphyrobacter 3 0 2683265 2 1456 no rank 799 species Porphyrobacter HT-58-2 0 2023229 1 1 Porphyrobacter sp. LM 6 0 1896196 species 657 1 1853 genus Erythrobacter 1041 195 0 3 Porphyrobacter neustonensis 0 1112 1 610 species 39960 0 Erythrobacter litoralis 1 1048 species genus 691 1 2800685 0 Altererythrobacter marensis 0 543877 1 691 species 1295327 65 0 Croceicoccus 3 1742 1 genus 971 species Croceicoccus marinus 450378 0 1 species 706 1 0 1348774 Croceicoccus naphthovorans 4 Altererythrobacter 57 361177 0 genus 1 1412 species 374 1 Altererythrobacter ishigakiensis 0 476157 species 522 1 Altererythrobacter atlanticus 0 1267766 361183 0 Altererythrobacter epoxidivorans 1 459 species 2800686 0 2 927 genus species 359 1 Altererythrobacter dongtanensis 692370 0 1 1982042 0 Altererythrobacter mangrovi species 568 0 1855416 2 1000 genus Erythrobacter flavus 192812 0 1 634 species 1 Erythrobacter seohaensis 0 266951 species 366 1562 1 order 0 7 54526 Pelagibacterales 7 1267 family 1655514 0 5 genus 1 703 3 Candidatus Pelagibacter 0 198251 4 198252 0 Candidatus Pelagibacter ubique 1 459 species no rank 240 1 2647897 0 Candidatus Pelagibacter sp. IMCC9063 0 1002672 1 240 species 2 1655516 0 no rank 564 alpha proteobacterium HIMB59 744985 0 1 230 species alpha proteobacterium HIMB5 0 859653 1 334 species 0 2045213 1 288 genus 1 Candidatus Fonsibacter ubiquis 0 1925548 species 288 order 1 400 4 Magnetococcales 0 6 1191478 3 Magnetococcaceae 64 1191479 0 family 1 394 genus 330 1 2 0 162171 4 Magnetococcus species 326 1 0 1124597 Magnetococcus marinus 1 127019 order Rhizobiales 0 1121 356 210 1 1895 family Chelatococcaceae 2036754 11 0 4 genus 1 1884 3 Chelatococcus 0 28209 81 1 0 2638111 no rank 1192 species 1192 1 1702325 0 Chelatococcus sp. CO-6 species 611 1 Chelatococcus daeguensis 444444 0 20 0 69277 113 Phyllobacteriaceae family 11823 1 1 677 genus Chelativorans 449972 2 0 2 2643807 0 1 675 no rank 1 Chelativorans sp. BNC1 0 266779 species 675 Mesorhizobium 0 272 68287 9 1 8001 genus species 639 1 0 1670800 Mesorhizobium sp. B7 species 961 1 0 2066070 Mesorhizobium japonicum species 1124 1 Mesorhizobium loti 0 381 1 Mesorhizobium opportunistum 0 593909 species 1065 865 species 0 536018 Mesorhizobium australicum 1 no rank 841 1 325217 0 species 841 1 Mesorhizobium sp. WSM1497 0 278153 1254 species Mesorhizobium ciceri 0 39645 1 species 980 1 71433 0 Mesorhizobium amorphae 2 Nitratireductor 0 10 245876 genus 1 593 583 species Nitratireductor basaltis 472175 0 1 2 28100 4 0 Phyllobacterium genus 727 1 723 species Phyllobacterium zundukense 1867719 0 1 31988 19 0 Aminobacter 2 1070 1 genus species 1051 1 83263 0 Aminobacter aminovorans 3 274591 0 Hoeflea 2 642 1 genus 639 no rank 2614931 0 1 639 species 0 1620421 Hoeflea sp. IMCC20628 1 family 3490 1 7 0 43 335928 Xanthobacteraceae 152053 27 0 Starkeya 2 1023 1 genus 1 Starkeya novella 0 921 species 996 Azorhizobium 16 6 0 2 1 1209 genus 1193 species Azorhizobium caulinodans 7 0 1 2 Xanthobacter 0 6 279 genus 1 1215 1209 species 0 280 Xanthobacter autotrophicus 1 15 119045 84 0 Methylobacteriaceae family 13726 1 2282523 0 3 4687 genus species 2521 1 0 408 Methylobacterium extorquens species 700 1 Methylobacterium zatmanii 29429 0 species 1466 1 Methylobacterium populi 0 223967 Microvirga 13 186650 0 2 1 1081 genus 1 Microvirga ossetica 0 1882682 species 1068 7874 1 genus 0 481 407 Methylobacterium 9 0 2615210 3 2711 no rank 1031 species 426117 0 Methylobacterium sp. 4-46 1 Methylobacterium sp. AMS5 925818 0 1 800 species species 880 1 Methylobacterium sp. C1 1479019 0 Methylobacterium phyllosphaerae 0 418223 1 803 species 1 0 334852 Methylobacterium oryzae species 824 1 Methylobacterium aquaticum 0 270351 species 1104 Methylobacterium radiotolerans 0 31998 1 939 species 1 Methylobacterium nodulans 0 114616 species 1012 Rhodobiaceae 119043 1 0 3 1 681 family 1 680 genus Parvibaculum 18 256616 0 2 662 species 0 256618 Parvibaculum lavamentivorans 1 5 Beijerinckiaceae 3 45404 0 family 1 944 genus 605 1 2 11 120652 0 Methylocella species 594 1 Methylocella silvestris 199596 0 genus 336 1 2 7 532 0 Beijerinckia Beijerinckia indica 533 0 1 329 species no rank 2545 6 119042 0 0 10 1572860 Hartmannibacter 2 945 1 genus 935 species 0 1482074 Hartmannibacter diazotrophicus 1 2 0 1484898 9 Methyloceanibacter genus 751 1 species 742 1 1384459 0 Methyloceanibacter caenitepidi genus 849 1 2 0 1734920 10 Pseudorhodoplanes 839 species Pseudorhodoplanes sinuspersici 1235591 0 1 6 9 31993 0 Methylocystaceae family 2034 1 genus 1 889 2 Methylosinus 0 425 13 876 species Methylosinus trichosporium 426 0 1 genus 1136 1 3 41 133 0 Methylocystis 2625913 0 1 505 no rank 505 species 0 187303 Methylocystis sp. SC2 1 Methylocystis bryophila 655015 0 1 590 species 7 255475 27 0 Aurantimonadaceae family 3853 1 4 Martelella 0 293088 66 genus 1 2981 1 2629616 0 no rank 1087 species 1087 1 Martelella sp. AD-3 0 686597 1 293089 0 Martelella mediterranea species 937 891 species Martelella endophytica 1486262 0 1 2 Aureimonas 19 414371 0 genus 1 845 826 no rank 0 2615206 1 1 Aureimonas sp. AU20 1349819 0 species 826 24138 1 family 41294 340 0 Bradyrhizobiaceae 26 0 40136 6 Oligotropha 2 630 1 genus 1 Oligotropha carboxidovorans 40137 0 species 624 2 Variibacter 0 1649510 5 genus 1 531 Variibacter gotjawalensis 0 1333996 1 526 species 12533 1 genus 0 294 374 Bradyrhizobium 11 species 779 1 Bradyrhizobium icense 0 1274631 Bradyrhizobium oligotrophicum 0 44255 1 1096 species 1830 species Bradyrhizobium japonicum 375 0 1 species 1797 1 0 1355477 Bradyrhizobium diazoefficiens 6737 no rank 2631580 0 6 1 2057741 0 Bradyrhizobium sp. SK17 species 1044 1085 species Bradyrhizobium sp. 0 376 1 0 115808 Bradyrhizobium sp. ORS 285 1 1135 species Bradyrhizobium sp. BTAi1 288000 0 1 1057 species 1 0 1223566 Bradyrhizobium sp. CCGE-LA001 species 1064 species 1352 1 114615 0 Bradyrhizobium sp. ORS 278 Rhodopseudomonas 0 55 1073 2 1 5451 genus species 5396 1 Rhodopseudomonas palustris 0 1076 3 Nitrobacter 0 911 6 genus 1 913 349 species 0 913 Nitrobacter winogradskyi 1 1 Nitrobacter hamburgensis 912 0 species 558 5 Bosea 85413 107 0 genus 1 3740 Bosea vaviloviae 0 1526658 1 966 species 2667 no rank 2653178 0 3 960 species 1842539 0 Bosea sp. RAC05 1 Bosea sp. AS-1 0 2015316 1 896 species 1 Bosea sp. PAMC 26642 0 1792307 species 811 Bartonellaceae 0 772 6 18 1 3546 family genus 1 3540 17 Bartonella 0 773 72 1235 no rank 0 2645622 6 Bartonella sp. A1379B 1933910 0 1 157 species 1 0 1933912 Bartonella sp. Raccoon60 species 158 Bartonella sp. 1-1C 515256 0 1 284 species 1 1933904 0 Bartonella sp. WD16.2 species 130 Bartonella sp. JB15 1933906 0 1 253 species 1 Bartonella sp. JB63 0 1933907 species 253 0 33047 Bartonella vinsonii 1 123 species species 737 1 Bartonella apis 1686310 0 species 172 1 774 0 Bartonella bacilliformis 1 803 0 Bartonella quintana species 141 1 0 38323 Bartonella henselae species 253 200 species 0 85701 Bartonella tribocorum 1 1 33045 0 Bartonella grahamii species 155 1 Bartonella ancashensis 1318743 0 species 68 species 289 1 56426 0 Bartonella clarridgeiae Bartonella australis 388640 0 1 95 species family 43197 1 53 0 433 82115 Rhizobiaceae no rank 30354 34 0 227290 1 7308 genus Agrobacterium 357 118 0 7 0 373 Agrobacterium vitis 1 668 species no rank 1569 2 2632611 0 729 species Agrobacterium sp. RAC06 1842536 0 1 species 840 1 861208 0 Agrobacterium sp. H13-3 1053 species 0 359 Agrobacterium rhizogenes 1 species group 3900 2 1183400 0 1 Agrobacterium tumefaciens 358 0 species 3037 1176649 0 Agrobacterium fabrum 1 863 species 1 21404 genus Rhizobium 0 379 1440 25 0 2613769 19 9195 no rank 0 1981173 Rhizobium sp. NXC14 1 595 species species 96 1 Rhizobium sp. TAL182 2020313 0 species 815 1 2048897 0 Rhizobium sp. NXC24 Rhizobium sp. Kim5 0 2020311 1 584 species 1 Rhizobium sp. IE4771 0 1301032 species 664 1 0 1703967 Rhizobium sp. N741 species 2 1703961 0 Rhizobium sp. N1314 1 120 species species 2 1 Rhizobium sp. N6212 0 1703965 0 424182 Rhizobium sp. IRBG74 1 720 species species 697 1 0 1869170 Rhizobium sp. S41 987 species 0 1571470 Rhizobium sp. ACO-34A 1 562 species Rhizobium sp. NT-26 0 1125847 1 1703966 0 Rhizobium sp. N731 1 120 species Rhizobium sp. N621 1703964 0 1 2 species 1 2020312 0 Rhizobium sp. CIAT894 species 802 789 species 1703969 0 Rhizobium sp. N324 1 species 2 1 Rhizobium sp. N1341 1703962 0 1 1914541 0 Rhizobium sp. Y9 species 726 0 2028343 Rhizobium sp. 10195 1 910 species species 1291 1 0 396 Rhizobium phaseoli 2337 species 0 29449 Rhizobium etli 1 1 Rhizobium tropici 398 0 species 765 Rhizobium gallicum 0 56730 1 1224 species 1 0 384 Rhizobium leguminosarum species 5152 2 3 1525371 0 Neorhizobium genus 1642 1 1 0 399 Neorhizobium galegae species 1639 14 323620 0 Shinella 2 1325 1 genus no rank 1311 1 2643062 0 species 1311 1 879274 0 Shinella sp. HZN7 no rank 9769 10 0 227292 106591 19 0 Ensifer 3 1933 1 genus 1032 species Ensifer adhaerens 0 106592 1 882 species 716925 0 Ensifer sojae 1 Sinorhizobium 28105 141 0 7 1 7836 genus species 852 1 Sinorhizobium medicae 110321 0 1123 species 194963 0 Sinorhizobium americanum 1 1 382 0 Sinorhizobium meliloti species 1764 1 663276 0 species group 2057 1 Sinorhizobium fredii 0 380 species 2057 2613772 0 2 1899 no rank 1 Sinorhizobium sp. CCBAU 05631 0 794846 species 710 species 1189 1 0 1842534 Sinorhizobium sp. RAC02 34019 4 0 Liberibacter 6 1316 1 genus species 270 1 34020 0 Candidatus Liberibacter africanus 286 species 0 309868 Candidatus Liberibacter americanus 1 species 274 1 Liberibacter crescens 1273132 0 224 species 34021 0 Candidatus Liberibacter asiaticus 1 species 258 1 Candidatus Liberibacter solanacearum 556287 0 1 8010 family Hyphomicrobiaceae 101 45401 0 19 Filomicrobium 7 119044 0 2 1 346 genus 339 species Candidatus Filomicrobium marinum 0 1608628 1 genus 1 1029 2 Rhodoplanes 0 29407 29 1 2619116 0 no rank 1000 species 1000 1 674703 0 Rhodoplanes sp. Z2-YC6860 1068 12 0 Rhodomicrobium 2 494 1 genus species 482 1 Rhodomicrobium vannielii 1069 0 genus 706 1 2 11 59282 0 Blastochloris 1 0 1079 Blastochloris viridis species 695 genus 1 2322 4 Hyphomicrobium 0 81 41 1 0 2619925 no rank 723 species 723 1 0 717785 Hyphomicrobium sp. MC1 1 53399 0 Hyphomicrobium denitrificans species 900 species 658 1 Hyphomicrobium nitrativorans 0 1427356 0 5 1082930 Pelagibacterium 2 514 1 genus Pelagibacterium halotolerans 0 531813 1 509 species 4 52 46913 0 Devosia genus 2498 1 no rank 2446 3 196773 0 species 617 1 0 2083786 Devosia sp. I507 1643450 0 Devosia sp. H5989 1 813 species Devosia sp. A16 0 1736675 1 1016 species 6016 1 family 0 118882 15 Brucellaceae 20 Ochrobactrum 23 528 0 5 1 2918 genus 730 species 571256 0 Ochrobactrum pituitosum 1 1 Ochrobactrum anthropi 0 529 species 862 693 species 271865 0 Ochrobactrum sp. A44 1 species 610 1 Ochrobactrum pseudogrignonense 0 419475 1148 234 0 Brucella 14 3083 1 genus species 181 1 0 120576 Brucella pinnipedialis 4 0 2632610 no rank 746 200 species 0 1149952 Brucella sp. 09RB8471 1 Brucella sp. 09RB8910 0 1844051 1 197 species Brucella sp. 141012304 0 1885919 1 276 species 1 Brucella sp. 2002734562 1891098 0 species 73 species 120 1 29459 0 Brucella melitensis 1 0 236 Brucella ovis species 30 120577 0 Brucella ceti 1 149 species 109 species 29461 0 Brucella suis 1 149 species Brucella abortus 0 235 1 species 83 1 444163 0 Brucella microti Brucella vulpis 981386 0 1 196 species species 172 1 Brucella canis 0 36855 508 1 order 2 1921002 0 Holosporales 6 family 227 1 2 0 44746 1 Holosporaceae no rank 226 1 204454 0 species 226 1 endosymbiont of Acanthamoeba sp. UWC8 86106 0 family 95 2 0 1777752 genus 1 95 2 Candidatus Paracaedibacter 0 2 1521255 1 Candidatus Paracaedibacter acanthamoebae 0 91604 species 93 1 0 2100208 family 184 184 genus 1509243 0 1 species 184 1 Candidatus Nucleicultrix amoebiphila 1509244 0 order 1 45793 88 Rhodobacterales 0 257 204455 87 Rhodobacteraceae 0 31989 814 family 1 45536 584 genus 0 1649279 1 species 584 1 Ruegeria mobilis 0 379347 1 1293 genus Sulfitobacter 0 60136 7 3 583 species 0 1402135 Sulfitobacter pseudonitzschiae 1 no rank 703 1 0 196795 703 species Sulfitobacter sp. AM1-D1 1917485 0 1 Ruegeria 97050 3 0 3 1 1398 genus 1 2625375 0 no rank 550 1 Ruegeria sp. TM1040 0 292414 species 550 845 species 0 89184 Ruegeria pomeroyi 1 3 2433 10 0 Roseobacter genus 808 1 species 433 1 Roseobacter denitrificans 0 2434 species 365 1 Roseobacter litoralis 42443 0 319 1 genus 6 1579315 0 Halocynthiibacter 2 species 313 1 Halocynthiibacter arcticus 1579316 0 1 1189 genus Sagittula 0 58842 1 2 1 0 2624628 no rank 1188 Sagittula sp. P11 2009329 0 1 1188 species Defluviimonas 1097466 7 0 2 1 882 genus 875 species 1335048 0 Defluviimonas alba 1 2211641 0 1 506 genus 506 species 245188 0 Loktanella vestfoldensis 1 809 1 genus 2 309512 0 Dinoroseobacter 2 1 Dinoroseobacter shibae 215813 0 species 807 0 2 159345 Roseibacterium 2 543 1 genus species 541 1 Roseibacterium elongatum 0 159346 genus 4389 1 5 72 1060 0 Rhodobacter species 1013 1 Rhodobacter capsulatus 1061 0 species 1980 1 Rhodobacter sphaeroides 0 1063 2 0 196779 no rank 1324 species 695 1 0 2033869 Rhodobacter sp. CZR27 1 0 1850250 Rhodobacter sp. LPB0142 species 629 genus 401 1 2 0 8 74030 Roseovarius 1 Roseovarius mucosus 0 215743 species 393 0 188905 1 655 genus 655 no rank 0 2645469 1 0 290400 Jannaschia sp. CCS1 1 655 species genus 1 641 2 Thioclava 0 285107 3 Thioclava nitratireducens 1915078 0 1 638 species 2511 1 genus 875170 10 0 Celeribacter 5 species 656 1 1758178 0 Celeribacter ethanolicus species 743 1 Celeribacter manganoxidans 0 1411902 0 1208324 Celeribacter indicus 1 788 species 1397108 0 Celeribacter marinus 1 314 species 2 227873 19 0 Pannonibacter genus 1272 1 1 Pannonibacter phragmitetus 121719 0 species 1253 4 Labrenzia 0 101 478070 genus 1 2729 species 1006 1 Labrenzia aggregata 0 187304 0 2648686 2 1622 no rank 939 species 0 1674922 Labrenzia sp. CP4 1 species 683 1 Labrenzia sp. VG12 0 2021862 genus 359 1 119541 0 species 359 1 441209 0 Rhodobaca barguzinensis 2332 1 genus 0 34008 54 Rhodovulum 4 2 0 2631432 no rank 1242 1 0 308754 Rhodovulum sp. MB263 species 578 0 1564506 Rhodovulum sp. P5 1 664 species species 1036 1 Rhodovulum sulfidophilum 0 35806 687 1 genus 0 5 1609958 Confluentimicrobium 2 1 2643318 0 no rank 682 682 species Confluentimicrobium sp. EMB200-NS6 1609966 0 1 2 0 191028 4 Leisingera genus 820 1 1 133924 0 Leisingera methylohalidivorans species 816 genus 335 1 2 1 1759396 0 Marivivens 1 0 2622455 no rank 334 species 334 1 0 1920883 Marivivens sp. JLT3646 449 genus 299261 0 1 species 449 1 0 299262 Tateyamaria omphalii 1017 1 genus 367771 1 0 Marinovum 2 1 42444 0 Marinovum algicola species 1016 0 360528 34 Pelagibaca 2 969 1 genus 935 species 1250539 0 Pelagibaca abyssi 1 1 6815 genus Paracoccus 0 265 120 9 1077935 0 Paracoccus zhejiangensis 1 833 species 1 Paracoccus aminophilus 0 34003 species 728 730 species 0 1945662 Paracoccus contaminans 1 0 2065379 Paracoccus sp. CBA4604 1 789 species 1 0 34004 Paracoccus aminovorans species 797 1 0 246570 no rank 449 1 Paracoccus sp. BM15 0 1529068 species 449 0 147645 Paracoccus yeei 1 1146 species species 1223 1 Paracoccus denitrificans 266 0 genus 182 1 0 1284657 182 species Planktomarina temperata 0 1284658 1 13 genus Loktanella 0 245186 1 genus 1 4402 5 Phaeobacter 302485 71 0 369 species Phaeobacter porticola 1844006 0 1 Phaeobacter inhibens 221822 0 1 1551 species Phaeobacter piscinae 1580596 0 1 1129 species 1 Phaeobacter gallaeciensis 0 60890 species 1282 Thalassococcus 436357 0 1 9 genus 2 263377 0 genus 1890 1 0 2640570 no rank 963 1792508 0 Yangia sp. CCB-MM3 1 963 species 0 1229727 Thiobacimonas profunda 1 927 species 1 1121 genus Ketogulonicigenium 5 92944 0 3 species 593 1 Ketogulonicigenium vulgare 0 92945 523 species 92947 0 Ketogulonicigenium robustum 1 genus 656 3 0 53945 1458307 0 Octadecabacter temperatus 1 159 species species 282 1 Octadecabacter antarcticus 0 1217908 215 species Octadecabacter arcticus 0 53946 1 2 0 58840 no rank 1142 485 species 0 1904441 Rhodobacteraceae bacterium 1 657 species Rhodobacteraceae bacterium QY30 2033435 0 1 1 74032 0 genus 595 species 595 1 Antarctobacter heliothermus 0 74033 20 204458 109 0 Caulobacterales order 12440 1 Caulobacteraceae 76892 183 0 19 1 12331 family 603 1 genus 76890 3 0 Asticcacaulis 2 1 0 78587 Asticcacaulis excentricus species 600 1 1055 genus Phenylobacterium 10 20 0 2 species 1045 1 Phenylobacterium zucineum 284016 0 genus 3951 1 7 67 41275 0 Brevundimonas species 670 1 Brevundimonas naejangsanensis 588932 0 species 603 1 Brevundimonas subvibrioides 74313 0 2622653 0 3 1884 no rank Brevundimonas sp. LM2 1938605 0 1 702 species 1 Brevundimonas sp. DS20 1532555 0 species 593 Brevundimonas sp. GW460-12-10-14-LB2 0 1827469 1 589 species 1 Brevundimonas vesicularis 41276 0 species 727 1 81440 0 no rank 309 309 species Caulobacteraceae bacterium OTSz_A_272 0 1759059 1 6230 1 genus 0 93 75 Caulobacter 6 1650 no rank 0 2648921 1 Caulobacter sp. K31 0 366602 1 1650 species 1 0 69395 Caulobacter henricii species 642 881 species Caulobacter mirabilis 0 69666 1 0 155892 Caulobacter vibrioides 1 2110 species 1 Caulobacter segnis 0 88688 species 854 269 order 255473 0 3 269 1 family 0 255474 10 Parvularculaceae 3 genus 1 259 2 Parvularcula 0 10 208215 species 249 1 208216 0 Parvularcula bermudensis 200783 0 20 4418 phylum class 4418 1 20 0 187857 2 Aquificae 3665 order 32069 0 15 0 90150 1 364 no rank 364 genus 412592 0 1 1 0 412593 Thermosulfidibacter takaii species 364 family 1972 10 64898 0 1 1438 genus Hydrogenobaculum 0 168657 25 6 1413 no rank 0 2622382 5 0 380749 Hydrogenobaculum sp. Y04AAS1 1 249 species 1 0 547146 Hydrogenobaculum sp. SN species 291 1 547143 0 Hydrogenobaculum sp. 3684 species 291 1 Hydrogenobaculum sp. SHO 547145 0 species 291 1 547144 0 Hydrogenobaculum sp. HO species 291 217 genus 75905 0 2 species 151 1 Thermocrinis ruber 75906 0 1 Thermocrinis albus 136094 0 species 66 1 939 0 genus 171 species 171 1 Hydrogenobacter thermophilus 940 0 1 0 2713 genus 146 1 0 63363 Aquifex aeolicus species 146 Hydrogenothermaceae 0 224027 25 4 1 1329 family genus 412 1 0 182899 species 412 1 309805 0 Persephonella marina genus 892 2 0 212790 1 2619248 0 no rank 554 0 436114 Sulfurihydrogenibium sp. YO3AOP1 1 554 species 1 Sulfurihydrogenibium azorense 0 309806 species 338 0 1485951 4 751 order 4 Desulfurobacteriaceae 558314 2 0 family 1 751 330 genus 0 171868 1 1 0 228745 Thermovibrio ammonificans species 330 Desulfurobacterium 0 64159 1 2 1 419 genus 1 0 64160 Desulfurobacterium thermolithotrophum species 418 2 2323 0 no rank 447 2 0 1783234 clade 447 1 0 95901 clade 338 class 338 1 0 2497643 2497644 0 1 338 order 338 family 0 2497645 1 0 1551504 1 338 genus 1 Candidatus Babela massiliensis 673862 0 species 338 95818 0 1 109 phylum no rank 109 1 1895827 0 109 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 2056494 1 2281 phylum 200930 0 7 Deferribacteres 0 68337 1 7 1 2281 class 0 1 191393 Deferribacterales 6 2280 1 order family 1 2279 5 Deferribacteraceae 13 191394 0 53572 0 1 622 genus 622 species Deferribacter desulfuricans 0 197162 1 117999 0 1 623 genus 118000 0 Denitrovibrio acetiphilus 1 623 species 649 genus 0 545865 1 649 species Calditerrivibrio nitroreducens 477976 0 1 1 0 2351 genus 372 1 Flexistipes sinusarabici 0 2352 species 372 694 clade 0 2498710 3 3 67814 0 phylum 694 0 693071 3 694 class 694 order 0 693072 3 3 Caldisericaceae 2 693073 0 family 1 694 genus 692 1 2 693074 4 0 Caldisericum 688 species Caldisericum exile 0 693075 1 6 0 200940 phylum 1067 Thermodesulfobacteria 67799 1 0 6 1 1067 class 5 188710 0 order 1066 family 1 1066 5 Thermodesulfobacteriaceae 7 188711 0 190 genus 0 241192 1 190 species 0 171695 Thermodesulfatator indicus 1 2 1740 0 genus 682 1 0 1741 Thermodesulfobacterium commune species 181 501 species 1295609 0 Thermodesulfobacterium geofontis 1 genus 187 1 0 444090 1 Caldimicrobium thiodismutans 0 1653476 species 187 2437774 clade 1783270 0 357 291 phylum 456828 0 1 291 genus 0 456826 1 291 species Candidatus Cloacimonas acidaminovorans 456827 0 1 0 65842 3 1363 phylum 3 1 204430 0 Fibrobacteria class 1363 1 1 1362 order Fibrobacterales 0 218872 2 2 family 1360 1 0 204431 1 0 832 genus 1360 1360 species Fibrobacter succinogenes 833 0 1 2433194 clade 0 68336 345 1498 phylum 1134404 0 5 Ignavibacteria 0 795747 2 5 1 1498 class order 1 1496 4 Ignavibacteriales 0 795748 6 916 family 795749 0 1 0 795750 1 916 genus 916 species 591197 0 Ignavibacterium album 1 1334117 0 2 574 family 9 1134403 0 Melioribacter 2 574 1 genus species 565 1 Melioribacter roseus 0 1134405 Bacteroidetes 0 13 976 318 1 2422708 phylum 7 Bacteroidetes Order II. Incertae sedis 1100069 84 0 order 1 4386 family 4302 1 6 0 19 563843 Rhodothermaceae 2 Rhodothermus 0 6 29548 genus 1 1903 species 1897 1 29549 0 Rhodothermus marinus no rank 1594 1 0 1196022 species 1594 1 Rhodothermaceae bacterium RA 0 1779382 2 146918 0 Salinibacter 2 786 1 genus Salinibacter ruber 146919 0 1 784 species Sphingobacteriia 13 117747 0 23 1 9796 class 9 200666 0 Sphingobacteriales 22 9783 1 order 21 Sphingobacteriaceae 0 37 84566 family 1 9774 Pedobacter 2 84567 0 6 1 3127 genus species 665 1 Pedobacter ginsengisoli 0 363852 984 0 Pedobacter heparinus 1 511 species 1 0 188932 Pedobacter cryoconitis species 740 573 species Pedobacter steynii 0 430522 1 636 no rank 2628915 0 1 1 0 1727164 Pedobacter sp. PACM 27299 species 636 no rank 646 1 0 84568 0 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 646 species 2896 1 genus 0 13 28453 Sphingobacterium 6 419 species 1010 0 Sphingobacterium mizutaii 1 4 2609468 0 no rank 2464 Sphingobacterium sp. G1-14 2003121 0 1 685 species species 635 1 1933220 0 Sphingobacterium sp. B29 species 650 1 0 743722 Sphingobacterium sp. 21 Sphingobacterium sp. ML3W 1538644 0 1 494 species 423349 22 0 Mucilaginibacter 4 1791 1 genus 2617802 0 1 611 no rank Mucilaginibacter sp. PAMC 26640 0 1300914 1 611 species species 580 1 Mucilaginibacter sp. BJC16-A31 0 1234841 578 species 1550579 0 Mucilaginibacter gotjawali 1 genus 669 1 929509 0 species 669 1 Solitalea canadensis 0 995 genus 608 1 2 0 1649482 2 Pseudopedobacter 1 Pseudopedobacter saltans 151895 0 species 606 1072 1 class 9 1937959 0 Saprospiria 8 1 1936988 0 Saprospirales 7 1063 1 order 1 247 family Saprospiraceae 0 89374 1 3 246 1 genus 0 1007 1 Saprospira 2 species 245 1 1008 0 Saprospira grandis 1 815 family Haliscomenobacteraceae 0 1 1937961 3 814 1 genus 0 1 2349 Haliscomenobacter 2 813 species 0 2350 Haliscomenobacter hydrossis 1 59 Cytophagia 0 83 768503 class 1 25869 1 25786 order Cytophagales 100 768507 0 58 family 12390 1 16 0 1853232 34 Hymenobacteraceae 1738 1 genus 1379908 19 0 Rufibacter 4 1 Rufibacter tibetensis 0 512763 species 592 0 2639626 2 1127 no rank 533 species 1379909 0 Rufibacter sp. DG15C 1 594 species 1379910 0 Rufibacter sp. DG31D 1 8 Hymenobacter 89966 58 0 genus 1 9117 0 2615202 5 6427 no rank 1 0 1356852 Hymenobacter sp. APR13 species 1700 Hymenobacter sp. PAMC 26554 0 1484116 1 1375 species species 1581 1 Hymenobacter sp. PAMC 26628 0 1484118 species 1001 1 1385664 0 Hymenobacter sp. DG25B 770 species 0 1385663 Hymenobacter sp. DG25A 1 1398 species Hymenobacter sedentarius 1411621 0 1 1446467 0 Hymenobacter swuensis 1 1234 species genus 1 1501 3 Pontibacter 14 323449 0 species 643 1 Pontibacter korlensis 400092 0 844 species 0 388950 Pontibacter akesuensis 1 4 200667 7 0 Flammeovirgaceae family 1378 1 no rank 577 1 340671 0 Flammeovirgaceae bacterium 311 1257021 0 1 577 species genus 794 1 2 59739 2 0 Flammeovirga 792 no rank 2637820 0 1 species 792 1 Flammeovirga sp. MY04 0 1191459 family 1 6850 17 Cytophagaceae 0 25 89373 2 1 861914 0 Fibrella genus 548 1 547 no rank 0 2620963 1 species 547 1 0 1834519 Fibrella sp. ES10-3-2-2 genus 413 1 2 0 319458 3 Leadbetterella 1 316068 0 Leadbetterella byssophila species 410 0 2 120831 Dyadobacter 2 1020 1 genus 1 Dyadobacter fermentans 0 94254 species 1018 2 Runella 105 6 0 genus 1 819 species 813 1 106 0 Runella slithyformis 1 677 genus Cytophaga 0 978 3 2 1 985 0 Cytophaga hutchinsonii species 674 genus 1 3348 6 Spirosoma 0 107 35 species 589 1 0 1211326 Spirosoma aerolatum 878 species 0 1178516 Spirosoma montaniterrae 1 Spirosoma radiotolerans 1379870 0 1 499 species 1 Spirosoma rigui 564064 0 species 706 1 2057025 0 Spirosoma sp. HA7 species 641 3 1853234 7 0 Persicobacteraceae family 730 1 1 723 genus Persicobacter 2 59740 0 2 0 2664020 1 721 no rank 1085624 0 Persicobacter sp. JZB09 1 721 species 1 771 family Bernardetiaceae 1937968 3 0 3 Bernardetia 0 1 1937972 2 1 768 genus 767 species Bernardetia litoralis 999 0 1 679 family 0 2762301 2 genus 679 1 2 0 869806 16 Marivirga 1 Marivirga tractuosa 0 1006 species 663 0 1501348 2 327 family genus 205 1 0 281119 species 205 1 281120 0 Candidatus Amoebophilus asiaticus genus 122 1 0 273135 no rank 122 1 0 2641185 122 species 249402 0 Cardinium endosymbiont of Encarsia pergandiella 1 1 2561 family Cyclobacteriaceae 0 563798 4 10 0 390846 2 Echinicola 2 433 1 genus 431 species 0 390884 Echinicola vietnamensis 1 genus 653 1 2 0 232244 1 Belliella 0 232259 Belliella baltica 1 652 species 1 351 genus Algoriphagus 246875 2 0 2 1 Algoriphagus sp. M8-2 0 1727163 species 349 genus 1 1120 3 Cyclobacterium 0 68288 21 1 Cyclobacterium marinum 0 104 species 583 species 516 1 Cyclobacterium amurskyense 0 320787 1 68233 class Flavobacteriia 0 117743 78 138 1 68155 order Flavobacteriales 0 200644 67 137 18037 family 0 2762318 21 genus 1 1218 2 Riemerella 1 34084 0 species 1217 1 34085 0 Riemerella anatipestifer 8526 no rank 2782232 0 10 9 0 59732 32 Chryseobacterium genus 6702 1 species 748 1 0 1265445 Chryseobacterium camelliae no rank 2318 3 2593645 0 species 588 1 Chryseobacterium sp. IHB B 17019 0 1721091 Chryseobacterium sp. StRB126 878220 0 1 869 species 861 species 2015076 0 Chryseobacterium sp. T16E-39 1 1 0 253 Chryseobacterium indologenes species 1237 Chryseobacterium gallinarum 0 1324352 1 946 species 774 species Chryseobacterium glaciei 0 1685010 1 species 647 1 Chryseobacterium piperi 0 558152 1824 genus 0 2782228 1 1 Chryseobacterium taklimakanense 0 536441 species 1824 genus 1 4849 6 Elizabethkingia 0 308865 36 782 species Elizabethkingia meningoseptica 0 238 1 569 species 0 1756149 Elizabethkingia genomosp. 3 1 1 Elizabethkingia anophelis 1117645 0 species 1791 1026 species Elizabethkingia miricola 172045 0 1 1 Elizabethkingia genomosp. 4 0 1756150 species 645 3049 1 genus 1 28250 0 Ornithobacterium 2 species 3048 1 28251 0 Ornithobacterium rhinotracheale genus 395 1 0 1013 395 species 1014 0 Weeksella virosa 1 family 46643 1 96 0 49546 256 Flavobacteriaceae 6 0 9 52959 Polaribacter genus 3618 1 785 species Polaribacter reichenbachii 996801 0 1 196858 0 3 1947 no rank Polaribacter sp. BM10 1529069 0 1 745 species 515 species Polaribacter sp. MED152 0 313598 1 687 species 2058137 0 Polaribacter sp. ALD11 1 species 877 1 0 1774273 Polaribacter vadi 1 0 336276 genus 506 1 0 2615019 no rank 506 1 Olleya sp. Bg11-27 2058135 0 species 506 genus 2132 3 104264 0 Cellulophaga algicola 0 59600 1 700 species 1 Cellulophaga lytica 979 0 species 723 709 species 76594 0 Cellulophaga baltica 1 genus 1 1405 5 Nonlabens 363408 2 0 species 386 1 Nonlabens sediminis 319236 0 no rank 565 2 2615035 0 species 238 1 2058134 0 Nonlabens sp. MB-3u-79 Nonlabens sp. MIC269 0 1476901 1 327 species 452 species Nonlabens dokdonensis 328515 0 1 genus 1110 2 0 286104 1110 no rank 0 2615021 2 574 species Winogradskyella sp. PG-2 754409 0 1 1 1936080 0 Winogradskyella sp. J14-2 species 536 9 237 0 Flavobacterium 9 5929 1 genus 996 0 Flavobacterium columnare 1 1030 species 1 0 1763534 Flavobacterium crassostreae species 330 species 592 1 1306519 0 Flavobacterium commune 0 986 Flavobacterium johnsoniae 1 1825 species species 436 1 Flavobacterium psychrophilum 0 96345 species 506 1 55197 0 Flavobacterium branchiophilum 312277 0 Flavobacterium indicum 1 685 species Flavobacterium gilvum 0 1492737 1 516 species 0 1649495 1 515 genus 1 0 2622645 no rank 515 1 0 1936081 Seonamhaeicola sp. S2-3 species 515 genus 501 1 393005 0 0 2069432 Tamlana sp. UJ94 1 501 species Siansivirga 2 1204360 0 2 1 413 genus 1 Siansivirga zeaxanthinifaciens 762954 0 species 411 1 1980 genus Maribacter 252356 3 0 5 1 Maribacter cobaltidurans 1178778 0 species 426 0 2615042 3 1551 no rank Maribacter sp. HTCC2170 0 313603 1 371 species 0 1836467 Maribacter sp. T28 1 624 species 0 1644130 Maribacter sp. 1_2014MBL_MicDiv 1 556 species genus 1 7974 15 Capnocytophaga 32 1016 0 0 1017 Capnocytophaga gingivalis 1 375 species 1140 species Capnocytophaga sputigena 0 1019 1 621 species 0 1848904 Capnocytophaga stomatis 1 6 0 2640652 no rank 2996 1 Capnocytophaga sp. ChDC OS43 209053 0 species 717 Capnocytophaga sp. oral taxon 878 0 1316596 1 689 species 1 Capnocytophaga sp. H2931 1945657 0 species 335 species 419 1 Capnocytophaga sp. oral taxon 864 1316593 0 Capnocytophaga sp. H4358 1945658 0 1 431 species 1 Capnocytophaga sp. oral taxon 323 0 1705617 species 405 447 species Capnocytophaga cynodegmi 0 28189 1 1 28188 0 Capnocytophaga canimorsus species 738 1 Capnocytophaga leadbetteri 327575 0 species 814 1 Capnocytophaga ochracea 0 1018 species 476 1 Capnocytophaga haemolytica 0 45243 species 335 0 153265 1 468 genus 1 0 101385 Aequorivita sublithincola species 468 1145 genus 0 326319 3 no rank 832 2 2615033 0 species 317 1 313590 0 Dokdonia sp. MED134 species 515 1 Dokdonia sp. 4H-3-7-5 983548 0 1 326320 0 Dokdonia donghaensis species 313 1 0 261827 genus 653 653 species 1736674 0 Algibacter alginicilyticus 1 1 0 252306 genus 576 576 species Robiginitalea biformata 252307 0 1 1 417127 0 genus 589 species 589 1 398743 0 Zunongwangia profunda 4 292691 0 genus 1507 411153 0 Gramella forsetii 1 353 species 1 Gramella flava 0 1486245 species 452 417 species Gramella sp. SH35 0 2126553 1 0 1913577 Gramella sp. LPB0144 1 285 species Myroides 0 33 76831 5 1 3287 genus 1 Myroides odoratimimus 76832 0 species 1815 no rank 1023 2 0 2642485 489 species Myroides sp. ZB35 1458492 0 1 534 species 0 1583100 Myroides sp. A21 1 480520 0 Myroides profundi 1 416 species 1 0 143222 genus 517 517 no rank 0 2633436 1 517 species 0 1729720 Salegentibacter sp. T436 1 1 83612 0 genus 270 Psychroflexus torquis 0 57029 1 270 species 543 genus 1518147 0 1 species 543 1 Wenyingzhuangia fucanilytica 1790137 0 1434 no rank 61432 0 2 828 species Flavobacteriaceae bacterium 3519-10 0 531844 1 species 606 1 0 1150389 Flavobacteriaceae bacterium UJ101 1 0 216431 genus 412 412 species Croceibacter atlanticus 0 313588 1 2700084 0 1 795 genus 1850246 0 Lutibacter sp. LPB0138 1 795 species 2 225842 0 genus 427 0 2644710 2 427 no rank 252 species 0 1336795 Formosa sp. Hel3_A1_48 1 175 species 1336794 0 Formosa sp. Hel1_33_131 1 2 0 1 112040 Zobellia genus 510 1 species 509 1 Zobellia galactanivorans 63186 0 genus 471 1 178469 0 species 471 1 Arenibacter algicola 0 616991 3 0 6 111500 Muricauda genus 834 1 1 Muricauda ruestringensis 0 111501 species 411 0 516051 Muricauda lutaonensis 1 417 species 811 genus 358023 0 1 1 0 1622118 Lutibacter profundi species 811 1 1209327 0 genus 460 1 Flavivirga eckloniae 0 1803846 species 460 220 genus 0 1176327 1 2636237 0 1 220 no rank 1 0 2094025 Aureitalea sp. RR4-38 species 220 5 Tenacibaculum 104267 3 0 genus 1 2548 species 778 1 584609 0 Tenacibaculum jejuense 1 1850252 0 Tenacibaculum todarodis species 668 Tenacibaculum dicentrarchi 669041 0 1 683 species species 416 1 107401 0 Tenacibaculum maritimum 2 Sediminicola 0 389486 1 genus 1 320 2648869 0 1 319 no rank 0 1453352 Sediminicola sp. YIK13 1 319 species Lacinutrix 0 8 291183 4 1 1507 genus species 459 1 1486034 0 Lacinutrix venerupis 2647285 0 2 1040 no rank species 426 1 2057808 0 Lacinutrix sp. Bg11-31 983544 0 Lacinutrix sp. 5H-3-7-4 1 614 species family 1697 9 39782 0 1697 1 genus 0 34098 23 Blattabacterium 9 Blattabacterium punctulatus 164514 0 1 226 species species 287 1 Blattabacterium cuenoti 0 1653831 no rank 1161 6 0 2647581 species 172 1 Blattabacterium sp. (Periplaneta americana) 0 367488 species 188 1 Blattabacterium sp. (Mastotermes darwiniensis) 0 39768 species 168 1 Blattabacterium sp. (Blatta orientalis) 367806 0 species 253 1 Blattabacterium sp. (Nauphoeta cinerea) 1316444 0 215 species 624186 0 Blattabacterium sp. (Blattella germanica) 1 1 0 1186051 Blattabacterium sp. (Blaberus giganteus) species 165 2 0 1853230 family 598 598 1 genus 332102 5 0 Fluviicola 2 1 191579 0 Fluviicola taffensis species 593 4 0 313602 no rank 397 genus 157 1 2 0 16 1940138 Candidatus Walczuchella Candidatus Walczuchella monophlebidarum 1415657 0 1 141 species 0 17 336809 Candidatus Sulcia 2 240 1 genus 223 species Candidatus Sulcia muelleri 0 336810 1 Cryomorphaceae 246874 0 1 1 family 2 0 1333713 family 488 Owenweeksia 4 267986 0 2 1 488 genus 1 Owenweeksia hongkongensis 0 253245 species 484 1 1755828 0 family 227 genus 227 1 1755829 0 species 227 1 Ichthyobacterium seriolicida 242600 0 67 93 200643 0 Bacteroidia class 2307965 1 1970189 1 0 Marinilabiliales 8 3391 1 order family 852 1 1970190 0 1 1970191 0 genus 852 852 species Salinivirga cyanobacteriivorans 1307839 0 1 3 Prolixibacteraceae 5 1471398 0 family 1 1101 1 1096 genus Draconibacterium 12 1471399 0 2 1 Draconibacterium orientale 0 1168034 species 1084 2 Marinilabiliaceae 1 558415 0 family 1 569 1 1193324 0 genus 568 species 568 1 0 889453 Alkalitalea saponilacus family 868 1 1573805 0 genus 868 1 0 2060722 0 1717717 Marinifilaceae bacterium SPP2 1 868 species order 2304481 1 58 0 238 171549 Bacteroidales 4957 family 0 2005520 5 1 1777 genus Petrimonas 307628 2 0 2 1 0 1642646 Petrimonas mucosa species 1775 0 1784836 1 1115 genus 1115 species 0 1562970 Fermentimonas caenicola 1 genus 2065 1 2 0 294702 11 Proteiniphilum 1642647 0 Proteiniphilum saccharofermentans 1 2054 species 0 333046 5 899177 no rank genus 898219 3 909656 0 1 357276 0 Bacteroides dorei species 710959 1 Bacteroides salanitronis 0 376805 species 13704 species 173556 1 Bacteroides vulgatus 821 0 958 1 genus 0 1 511434 Candidatus Azobacteroides 2 species 957 1 Candidatus Azobacteroides pseudotrichonymphae 0 511435 no rank 831 1 0 185291 831 species 0 1400053 Bacteroidales bacterium CF 1 family 157584 1 5 0 171550 14 Rikenellaceae Mucinivorans 3 1611681 0 2 1 1398 genus 1 Mucinivorans hirudinis 1433126 0 species 1395 2 Alistipes 239759 35 0 genus 1 156172 species 156137 1 Alistipes finegoldii 0 214856 Prevotellaceae 0 171552 22 11 1 53748 family 10 72 838 0 Prevotella genus 53726 1 842 no rank 2638335 0 1 652716 0 Prevotella sp. oral taxon 299 1 842 species 1804 species Prevotella melaninogenica 28132 0 1 1 76123 0 Prevotella enoeca species 1425 38013 species Prevotella intermedia 0 28131 1 0 1177574 Prevotella jejuni 1 1646 species Prevotella fusca 589436 0 1 1993 species species 2227 1 Prevotella ruminicola 0 839 1 52227 0 Prevotella dentalis species 3417 2287 species Prevotella denticola 28129 0 1 1100 family 0 2005523 2 2 0 3 346096 Paludibacter genus 1100 1 Paludibacter propionicigenes 0 185300 1 1097 species Barnesiellaceae 0 2005519 4 3 1 30146 family 30142 1 genus 4 397864 0 Barnesiella 2 30138 species Barnesiella viscericola 397865 0 1 family 1 4831 4 Porphyromonadaceae 171551 10 0 3 Porphyromonas 0 8 836 genus 1 4821 959 species Porphyromonas asaccharolytica 0 28123 1 1 Porphyromonas gingivalis 837 0 species 3854 11 0 21 815 Bacteroidaceae family 765180 1 genus 1 765159 10 Bacteroides 0 10144 816 species 65868 1 47678 0 Bacteroides caccae 80877 species Bacteroides thetaiotaomicron 0 818 1 species 18685 1 0 290053 Bacteroides helcogenes species 114011 1 Bacteroides cellulosilyticus 246787 0 Bacteroides zoogleoformans 0 28119 1 24138 species species 51275 1 0 28116 Bacteroides ovatus 1 0 1796613 Bacteroides caecimuris species 30943 15343 species Bacteroides heparinolyticus 0 28113 1 species 353875 1 Bacteroides fragilis 0 817 family 1 326852 7 Tannerellaceae 15 2005525 0 1 20950 genus Tannerella 0 195950 17 3 species 17285 1 Tannerella forsythia 28112 0 1 0 2620507 no rank 3648 3648 species 0 712710 Tannerella sp. oral taxon HOT-286 1 3 24 375288 0 Parabacteroides genus 305887 1 Parabacteroides distasonis 823 0 1 85062 species no rank 220801 1 2649774 0 species 220801 1 Parabacteroides sp. CT06 2025876 0 Odoribacteraceae 1853231 3 0 3 1 59837 family genus 1 59834 2 Odoribacter 0 5 283168 0 28118 Odoribacter splanchnicus 1 59829 species 1 5374 class Chitinophagia 0 10 1853228 15 14 1853229 13 0 Chitinophagales order 5364 1 1 5351 family Chitinophagaceae 563835 14 0 13 1 1567 genus Chitinophaga 0 5 79328 3 species 586 1 2029983 0 Chitinophagaceae bacterium 13 species 976 1 79329 0 Chitinophaga pinensis 3 1 379899 0 Niabella genus 1268 1 species 643 1 446683 0 Niabella soli 624 species Niabella ginsenosidivorans 1176587 0 1 692 1 genus 0 2 649460 Filimonas 2 Filimonas lacunae 477680 0 1 690 species 1769012 0 1 558 genus no rank 558 1 0 2636138 Arachidicoccus sp. BS20 1850526 0 1 558 species 497 1 genus 0 1 398041 Flavisolibacter 2 species 496 1 Flavisolibacter tropicus 1492898 0 0 354354 1 755 genus species 755 1 Niastella koreensis 354356 0 22 1090 0 phylum 8988 22 Chlorobia 46 191410 0 class 1 8988 Chlorobiales 51 191411 0 21 1 8942 order 191412 38 0 Chlorobiaceae 20 8891 1 family 1 399 genus Chloroherpeton 100715 6 0 2 Chloroherpeton thalassium 100716 0 1 393 species genus 1 3144 4 Chlorobaculum 256319 16 0 1 Chlorobaculum tepidum 1097 0 species 834 1 0 274539 Chlorobaculum parvum species 1015 species 1279 1 Chlorobaculum limnaeum 0 274537 no rank 3274 8 274493 0 Chlorobium 1 1091 0 5 1 1943 genus species 432 1 0 1094 Chlorobium phaeovibrioides species 281 1 0 337090 Chlorobium chlorochromatii 683 species 0 1096 Chlorobium phaeobacteroides 1 species 546 1 1092 0 Chlorobium limicola genus 1331 1 3 1099 18 0 Pelodictyon 857 species 0 1100 Pelodictyon luteolum 1 1 Pelodictyon phaeoclathratiforme 0 34090 species 456 Prosthecochloris 1101 6 0 5 1 2036 genus 311 species 0 1102 Prosthecochloris aestuarii 1 3 0 2632826 no rank 1719 species 817 1 281093 0 Prosthecochloris sp. GSB1 385 species 1868325 0 Prosthecochloris sp. CIB 2401 1 1 0 1974213 Prosthecochloris sp. HL-130-GSB species 517 0 142182 8 2926 phylum 2926 1 class 0 219685 12 Gemmatimonadetes 8 Gemmatimonadales 67 219686 0 7 1 2914 order family 1 2847 6 Gemmatimonadaceae 0 23 219687 1421 1 genus 5 1706036 0 Gemmatirosa 2 861299 0 Gemmatirosa kalamazoonesis 1 1416 species 3 Gemmatimonas 0 173479 19 genus 1 1403 0 173480 Gemmatimonas aurantiaca 1 655 species species 729 1 Gemmatimonas phototrophica 1379270 0