members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 39686 4749 39647833 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 0 name 1 67757 261 2157 superkingdom 0 0 clade 1783275 5747 46 0 phylum 36 3881 28889 0 class Thermoprotei 183924 36 1 3881 1 1006 11 2266 0 order 7 1 1 550 2267 Thermoproteaceae 0 family 93 1 2276 genus 0 Pyrobaculum islandicum species 0 1 93 2277 0 genus 76886 1 78 1 78 76887 Caldivirga maquilingensis 0 species genus 0 234 2 164450 Vulcanisaeta moutnovskia 0 species 170 1 985052 1 64 164451 Vulcanisaeta distributa species 0 0 genus 2 144 2270 Thermoproteus uzoniensis 0 species 94 1 184117 species 0 Thermoproteus tenax 2271 1 50 0 family 456 4 114378 0 genus 4 456 2268 0 species Thermofilum pendens 2269 1 91 species 0 Thermofilum adornatus 1365176 149 1 1 134 1483572 Thermofilum carboxyditrophus species 0 Thermofilum uzonense species 0 1 82 1550241 order 0 Acidilobales 871006 506 1 1 3 871007 216 1 family 0 genus 0 105850 1 216 0 species Acidilobus saccharovorans 242703 1 216 289 1 255472 family 0 200414 289 1 genus 0 200415 289 1 species 0 Caldisphaera lagunensis 9 1608 2281 0 order family 0 118883 9 1608 0 genus 213 1 12914 563177 1 213 0 species Acidianus hospitalis 0 genus 279 1 69655 111955 1 279 species 0 Sulfolobus tokodaii genus 0 2100760 212 1 0 species Sulfolobus solfataricus 2287 1 212 139 2 41980 0 genus species 0 Metallosphaera cuprina 1006005 1 95 1 44 43687 Metallosphaera sedula species 0 15 4 765 1 2284 Sulfolobus genus 0 2285 1 114 species 0 Sulfolobus acidocaldarius Sulfolobus islandicus 0 species 441 1 43080 no rank 0 1 195 2641160 Sulfolobus sp. A20 species 0 195 1 1891280 order 0 Desulfurococcales 114380 1 12 760 1 2272 8 448 family 0 477695 44 1 genus 0 1200300 44 1 0 species Thermogladius calderae 2279 238 2 genus 0 1 107 2280 Staphylothermus marinus 0 species species 0 Staphylothermus hellenicus 84599 131 1 2273 56 2 0 genus 19 1 2275 Desulfurococcus mucosus 0 species 37 1 94694 Desulfurococcus amylolyticus species 0 0 genus 47 2 54258 species 0 Ignicoccus islandicus 54259 1 28 species 0 Ignicoccus hospitalis 160233 19 1 1 63 54253 genus 0 1 63 54254 Thermosphaera aggregans 0 species 311 3 2307 family 0 0 genus 121 1 54251 species 0 Pyrolobus fumarii 54252 1 121 2308 1 67 0 genus Pyrodictium delaneyi species 0 67 1 1273541 genus 0 1 123 54247 Hyperthermus butylicus species 0 123 1 54248 0 phylum 42 1 51967 498845 42 1 genus 0 1 42 498846 Candidatus Korarchaeum cryptofilum species 0 0 phylum 1824 9 651137 Nitrososphaeria class 0 3 6 412 1 1643678 order 0 362 1 1033996 1 362 1033997 0 family genus 0 497726 362 1 Nitrososphaera viennensis species 0 362 1 1034015 order 0 44 1 1968909 family 0 1968910 1 44 498374 1 44 0 genus Candidatus Nitrosocaldus islandicus species 0 1 44 2045011 888 3 31932 0 order 338190 3 888 0 family 0 genus 282 1 1993653 species 0 Candidatus Nitrosomarinus catalina 1898749 1 282 genus 0 338191 606 2 1580092 246 1 species 0 Candidatus Nitrosopumilus adriaticus Candidatus Nitrosopumilus sediminis species 0 360 1 1229909 651142 3 524 no rank 0 genus 0 1 189 1593364 189 1 1410606 Candidatus Nitrosopelagicus brevis 0 species 2 335 1825023 genus 0 1846278 197 1 species 0 Candidatus Nitrosotenuis sp. AQ6f 1603555 138 1 species 0 Candidatus Nitrosotenuis cloacae 0 phylum Euryarchaeota 28890 214 3 1 61969 183968 1 6011 18 40 class 0 Thermococci 2258 39 7 1 5993 0 order Thermococcales 0 family Thermococcaceae 2259 8 38 5986 1 0 genus 7 925 2260 0 species Pyrococcus furiosus 2261 197 1 1 135 1609559 Pyrococcus kukulkanii 0 species 29292 1 49 species 0 Pyrococcus abyssi 2 221 2629106 no rank 0 Pyrococcus sp. ST04 species 0 139 1 1183377 species 0 Pyrococcus sp. NA2 342949 82 1 0 species Pyrococcus horikoshii 53953 212 1 1008460 111 1 0 species Pyrococcus yayanosii 78 29 1 4876 2263 Thermococcus genus 0 0 species Thermococcus litoralis 2265 1 209 71998 1 88 species 0 Thermococcus pacificus Thermococcus gorgonarius 0 species 1 130 71997 195522 176 1 0 species Thermococcus nautili 1 233 582419 Thermococcus paralvinellae species 0 0 species Thermococcus thioreducens 277988 173 1 1505907 196 1 0 species Thermococcus eurythermalis 88 1 187878 Thermococcus gammatolerans 0 species 163003 279 1 0 species Thermococcus cleftensis 187880 222 1 species 0 Thermococcus radiotolerans 54262 1 87 species 0 Thermococcus chitonophagus 72803 1 185 0 species Thermococcus siculi Thermococcus profundus species 0 72 1 49899 0 species Thermococcus barossii 54077 172 1 Thermococcus sibiricus species 0 1 182 172049 Thermococcus celer species 0 231 1 2264 55802 267 1 species 0 Thermococcus barophilus 0 species Thermococcus peptonophilus 53952 1 156 342948 87 1 0 species Thermococcus onnurineus no rank 0 1017 6 2627626 84 1 122420 Thermococcus sp. P6 0 species 1 185 2016361 Thermococcus sp. EXT12c 0 species 1 181 1042877 Thermococcus sp. 4557 species 0 1 254 2008440 Thermococcus sp. 5-4 species 0 1 101 1674923 Thermococcus sp. 2319x1 0 species species 0 Thermococcus sp. AM4 246969 1 212 Thermococcus kodakarensis 0 species 1 198 311400 110164 1 171 species 0 Thermococcus guaymasensis 179 1 1712654 Thermococcus piezophilus species 0 0 genus 1 177 83867 1 177 971279 Palaeococcus pacificus 0 species class 0 183980 1480 7 2231 7 1480 0 order 0 family 1480 7 2232 2233 823 4 genus 0 Archaeoglobus profundus 0 species 166 1 84156 Archaeoglobus sulfaticallidus species 0 1 233 1316941 298 1 2234 Archaeoglobus fulgidus 0 species Archaeoglobus veneficus 0 species 1 126 58290 genus 0 149 1 54260 species 0 Ferroglobus placidus 54261 1 149 0 genus 508 2 190818 113653 192 1 0 species Geoglobus ahangari 0 species Geoglobus acetivorans 565033 316 1 2290931 36898 110 0 clade Methanomicrobia class 0 16892 1 18 48 224756 2191 14 41 3829 1 order 0 Methanomicrobiales family 0 Methanoregulaceae 1198451 1130 1 5 2 Methanosphaerula genus 0 311 1 2 2 475087 475088 309 1 0 species Methanosphaerula palustris 0 genus 817 2 395331 882104 1 551 species 0 Methanoregula formicica Methanoregula boonei 0 species 266 1 358766 0 family 88404 422 1 2192 1 422 genus 0 0 species Methanocorpusculum labreanum 83984 422 1 family 0 196137 362 1 genus 0 1 362 2202 0 species Methanospirillum hungatei 2203 362 1 6 6 1874 1 2194 Methanomicrobiaceae 0 family 0 genus 230355 1 268 54120 268 1 0 species Methanolacinia petrolearia 45989 1 1600 16 4 genus 0 Methanoculleus 626 1 83986 Methanoculleus bourgensis 0 species Methanoculleus marisnigri 0 species 482 1 2198 2619537 1 476 no rank 0 0 species Methanoculleus sp. MAB1 86622 476 1 570264 16 4 1 874 0 order Methanocellales 0 family 858 3 570265 570266 3 1 1 858 genus 0 Methanocella 0 species Methanocella arvoryzae 1175445 666 1 1 191 1175444 Methanocella conradii 0 species 94695 29 23 12171 1 order 0 Methanosarcinales 0 family Methanosarcinaceae 2206 7 24 11135 1 genus 0 101191 1 449 101192 1 449 0 species Methanomethylovorans hollandica 196136 452 1 genus 0 452 1 39669 Methanosalsum zhilinae 0 species Methanosarcina 0 genus 13 74 8093 1 2207 387 1 2210 Methanosarcina thermophila species 0 Methanosarcina barkeri 0 species 1 1649 2208 Methanosarcina acetivorans 0 species 627 1 2214 Methanosarcina lacustris species 0 347 1 170861 species 0 Methanosarcina vacuolata 2215 1 501 1 834 38027 Methanosarcina siciliae 0 species 4 1915 2644672 no rank 0 Methanosarcina sp. WWM596 0 species 444 1 1434103 374 1 1434100 Methanosarcina sp. MTP4 0 species 569 1 1434102 Methanosarcina sp. WH1 0 species species 0 Methanosarcina sp. Kolksee 1434099 1 528 Methanosarcina mazei 0 species 980 1 2209 1 779 418008 Methanosarcina horonobensis species 0 0 genus 2220 1 323 420950 323 1 0 species Methanolobus psychrophilus 2175 3 3 510 1 0 genus Methanohalophilus 0 species Methanohalophilus halophilus 2177 1 250 Methanohalophilus mahii 0 species 257 1 2176 genus 0 1 522 2321 Methanohalobium evestigatum 0 species 522 1 2322 1 779 5 3 2225 Methanococcoides 0 genus 0 species Methanococcoides methylutens 2226 1 319 Methanococcoides burtonii species 0 1 455 29291 0 family Methanosaetaceae 143067 4 7 1013 1 Methanothrix 0 genus 1 3 1006 1 2222 Methanosaeta harundinacea species 0 1 444 301375 561 1 2223 Methanothrix soehngenii 0 species 20006 1 62 113 183963 Halobacteria 0 class Natrialbales 0 order 76 18 5862 1 1644060 family 0 Natrialbaceae 1644061 64 17 5786 1 580 1 29287 genus 0 Natronococcus occultus species 0 1 580 29288 genus 0 Halopiger 387342 2 1 847 1 Halopiger xanaduensis species 0 1 846 387343 203193 3 2 722 1 0 genus Halobiforma species 0 Halobiforma lacisalsi 229731 1 719 genus 0 565 1 1269201 565 1 2621923 0 no rank 565 1 1333523 Salinarchaeum sp. Harcht-Bsk1 0 species genus 0 326 1 2256 Natronobacterium gregoryi species 0 1 326 44930 121871 6 3 1 1132 genus 0 Haloterrigena 0 species Haloterrigena daqingensis 588898 1 278 Haloterrigena turkmenica species 0 848 1 62320 0 genus Natrinema 88723 3 5 1 754 no rank 0 2622230 350 1 350 1 406552 Natrinema sp. J7-2 species 0 0 species Natrinema pellirubrum 69525 399 1 322 1 63742 genus 0 322 1 13769 Natrialba magadii 0 species 0 genus Halostagnicola 353799 1 2 474 1 Halostagnicola larsenii species 0 1 473 353800 26 69 8240 1 2235 Halobacteriales order 0 5711 1 86 15 1963268 Haloarculaceae 0 family genus 0 Halorientalis 1073987 801 1 3 2 2648975 1 798 no rank 0 798 1 1932360 Halorientalis sp. IM1011 0 species 420 1 203135 genus 0 species 0 Halomicrobium mukohataei 57705 420 1 Natronomonas 0 genus 8 3 1 1044 63743 416273 1 435 0 species Natronomonas moolapensis 1 601 2257 Natronomonas pharaonis species 0 genus 0 Haloarcula 2237 2414 1 111 5 species 0 Haloarcula hispanica 51589 647 1 416 1 1932004 Haloarcula taiwanensis species 0 no rank 0 627 1 2624677 Haloarcula sp. CBA1115 0 species 1 627 1592728 species 0 Haloarcula marismortui 2238 1 613 Halorhabdus genus 0 1 3 1 946 146825 430914 1 319 species 0 Halorhabdus tiamatea 626 1 146826 Halorhabdus utahensis 0 species 0 family Halobacteriaceae 2236 9 10 1 2460 1980514 347 1 0 genus 0 species Halodesulfurarchaeum formicicum 1873524 1 347 2239 1495 1 4 30 genus 0 Halobacterium Halobacterium hubeiense species 0 589 1 1407499 2242 411 1 0 species Halobacterium salinarum 2668073 1 465 no rank 0 1 465 751944 Halobacterium sp. DL1 0 species 332246 2 8 1 461 0 genus Halalkalicoccus 413810 453 1 0 species Halalkalicoccus jeotgali Halanaeroarchaeum 0 genus 2 2 1 148 1656823 1604004 146 1 0 species Halanaeroarchaeum sulfurireducens 1644055 5791 1 55 17 0 order Haloferacales 1644056 2690 1 7 8 family 0 Haloferacaceae Haloferax genus 0 1 2253 4 48 2251 Haloferax volcanii 0 species 1 840 2246 species 0 Haloferax mediterranei 2252 1 367 35746 1 998 species 0 Haloferax gibbonsii 0 genus 256 1 60846 1 256 60847 Halogeometricum borinquense species 0 293431 173 1 0 genus Haloquadratum walsbyi species 0 1 173 293091 Halorubraceae family 0 8 36 2615 1 1963271 0 genus Halorubrum 56688 21 3 1 997 species 0 Halorubrum trapanicum 29284 567 1 Halorubrum lacusprofundi species 0 1 409 2247 1644057 2 5 1 1218 0 genus Salinigranum 1 1213 755307 Salinigranum rubrum 0 species 0 genus Halopenitus 1209988 364 1 2 4 0 species Halopenitus persicus 1048396 1 360 no rank 0 2678336 1 431 halophilic archaeon DL31 species 0 431 1 756883 2283794 13282 38 0 clade 183939 4 16 5794 1 0 class Methanococci order 0 2182 15 5790 family 0 2258 8 196117 196118 1785 6 genus 0 species 0 Methanocaldococcus bathoardescens 1301915 384 1 no rank 0 1 321 2641196 species 0 Methanocaldococcus sp. FS406-22 644281 1 321 species 0 Methanocaldococcus infernus 67760 227 1 73913 1 321 0 species Methanocaldococcus vulcanius 2190 247 1 0 species Methanocaldococcus jannaschii Methanocaldococcus fervens species 0 285 1 83171 Methanotorris genus 0 2 11 1 473 196119 1 462 2189 Methanotorris igneus species 0 2183 1 7 3532 1 0 family Methanococcaceae 2184 5 1 1 3139 0 genus Methanococcus Methanococcus voltae 0 species 382 1 2188 260 1 42879 Methanococcus aeolicus species 0 2113 1 39152 Methanococcus maripaludis 0 species Methanococcus vannielii species 0 383 1 2187 155862 392 1 genus 0 species 0 Methanothermococcus okinawensis 155863 1 392 22 7488 183925 class 0 2158 22 7488 order 0 Methanobacteriaceae 0 family 7176 1 4 21 2159 Methanobacterium genus 0 2054 1 3 8 2160 0 species Methanobacterium formicicum 2162 334 1 868131 1 324 species 0 Methanobacterium paludis species 0 Methanobacterium congolense 118062 1 226 species 0 Methanobacterium subterraneum 59277 1 215 877455 354 1 species 0 Methanobacterium lacus 0 no rank 598 2 2627676 1 376 1379702 Methanobacterium sp. MB1 0 species species 0 Methanobacterium sp. MZ-A1 1911685 222 1 1 3870 3 7 2172 Methanobrevibacter genus 0 2173 775 1 0 species Methanobrevibacter smithii 0 species Methanobrevibacter olleyae 294671 1 687 0 species Methanobrevibacter ruminantium 83816 1 746 645 1 230361 Methanobrevibacter millerae species 0 2 1014 2638681 0 no rank Methanobrevibacter sp. AbM4 0 species 1 450 224719 1609968 564 1 species 0 Methanobrevibacter sp. YE315 2316 1 820 genus 0 0 species Methanosphaera stadtmanae 2317 820 1 145260 4 428 0 genus 2631116 135 1 0 no rank Methanothermobacter sp. CaT2 species 0 135 1 866790 0 species Methanothermobacter thermautotrophicus 145262 84 1 0 species Methanothermobacter wolfeii 145261 1 69 145263 140 1 0 species Methanothermobacter marburgensis 0 family 1 312 2178 312 1 2179 0 genus Methanothermus fervidus 0 species 312 1 2180 4295 18 2283796 clade 0 clade 0 1803510 241 2 genus 0 241 2 379546 no rank 0 2633939 1 51 0 species Aciduliprofundum sp. MAR08-339 673860 51 1 379547 190 1 0 species Aciduliprofundum boonei 0 class Thermoplasmata 183967 19 16 4054 1 1178 5 1235850 0 order Methanomassiliicoccaceae family 0 1 797 3 2 1577788 1080709 1 563 genus 0 Candidatus Methanomassiliicoccus intestinalis 0 species 1 563 1406512 1607807 1 232 genus 0 1577791 232 1 0 species Candidatus Methanoplasma termitum 2517203 381 2 family 0 1291539 1 381 2 8 0 genus Candidatus Methanomethylophilus Candidatus Methanomethylophilus alvus 0 species 373 1 1291540 916 1 1234666 no rank 0 1495144 1 916 species 0 methanogenic archaeon ISO4-H5 Thermoplasmatales 0 order 1941 1 9 3 2301 1 359 1747776 0 family 1 359 1747777 genus 0 species 0 Cuniculiplasma divulgatum 1673428 359 1 family 0 46630 1 209 0 genus 46631 1 209 species 0 Picrophilus torridus 82076 209 1 0 no rank 1919231 606 1 1 606 1054217 Thermoplasmatales archaeon BRNA1 species 0 0 family 474 2 90142 0 genus 474 2 74968 97393 273 1 0 species Ferroplasma acidarmanus 0 species Ferroplasma acidiphilum 74969 201 1 family 0 46659 3 290 Thermoplasma 0 genus 1 290 3 8 2302 137 1 2303 Thermoplasma acidophilum 0 species 145 1 50339 Thermoplasma volcanium 0 species 1783276 41 1 clade 0 phylum 0 41 1 1801631 0 genus 2490204 1 41 1920749 1 41 0 species Candidatus Micrarchaeota archaeon Mia14 2 4456 77 1 39540390 superkingdom 0 Bacteria 24 52323 32066 phylum 0 0 class Fusobacteriia 203490 24 35 52323 1 Fusobacteriales order 0 23 41 1 52288 203491 203492 37554 1 12 69 0 family Fusobacteriaceae genus 0 Fusobacterium 848 1 35923 171 9 Fusobacterium nucleatum species 0 11155 1 851 0 species Fusobacterium hwasookii 1583098 3497 1 1 5834 856 Fusobacterium varium species 0 Fusobacterium periodonticum species 0 1 6890 860 Fusobacterium mortiferum 0 species 2798 1 850 Fusobacterium gonidiaformans species 0 1578 1 849 Fusobacterium necrophorum 0 species 1 1292 859 1 2708 861 Fusobacterium ulcerans 0 species genus 0 Ilyobacter 167639 1 2 1 1562 1 1561 167642 Ilyobacter polytropus species 0 1129771 1 14693 32 10 family 0 Leptotrichiaceae genus 0 1986 1 34104 34105 1 1986 0 species Streptobacillus moniliformis 2 2 1969 1 168808 Sneathia genus 0 0 species Sneathia amnii 187101 1967 1 genus 0 32068 1 2222 826 1 2222 species 0 Sebaldella termitidis 5 31 1 8484 32067 Leptotrichia genus 0 1911 1 40542 Leptotrichia buccalis 0 species 2633022 3 6542 0 no rank Leptotrichia sp. oral taxon 212 species 0 1 2912 712357 Leptotrichia sp. oral taxon 847 species 0 1 1972 1785996 Leptotrichia sp. oral taxon 498 species 0 1658 1 712368 phylum 0 3629 9 200930 9 5 3629 1 68337 Deferribacteres 0 class 191393 8 8 3624 1 order 0 Deferribacterales 191394 1 3616 28 7 family 0 Deferribacteraceae 545865 791 1 0 genus Calditerrivibrio nitroreducens 0 species 791 1 477976 1169 1 2 2 53572 Deferribacter genus 0 0 species Deferribacter desulfuricans 197162 1 1167 Denitrovibrio 0 genus 847 1 1 2 117999 118000 1 846 0 species Denitrovibrio acetiphilus 0 genus 1 781 2351 2352 1 781 species 0 Flexistipes sinusarabici 508458 5940 11 phylum 0 5940 1 11 68 649775 Synergistia class 0 order 0 Synergistales 649776 1 5872 79 10 0 family Synergistaceae 649777 133 9 1 5793 Cloacibacillus genus 0 5 2 3548 1 508459 Cloacibacillus porcorum 0 species 3543 1 1197717 0 genus 1 618 81466 Aminobacterium colombiense species 0 1 618 81468 0 genus Acetomicrobium 49894 1 348 1 2 Acetomicrobium mobile species 0 1 347 97477 336260 1 305 0 genus Thermovirga lienii 0 species 305 1 336261 81461 2 32 1 841 0 genus Thermanaerovibrio 809 1 81462 Thermanaerovibrio acidaminovorans species 0 200918 16144 44 phylum 0 Thermotogae class 0 9 44 16144 1 188708 28 14 1 10203 2419 Thermotogales order 0 1643950 1 4756 10 18 0 family Fervidobacteriaceae genus 0 Thermosipho 2420 5 6 1 3160 2421 827 1 0 species Thermosipho africanus 2 1316 2676525 no rank 0 1437364 670 1 0 species Thermosipho sp. 1070 Thermosipho sp. 1063 0 species 1 646 1462747 species 0 Thermosipho melanesiensis 46541 1 1011 1578 1 4 7 2422 Fervidobacterium genus 0 93466 1 622 species 0 Fervidobacterium pennivorans 1 380 2423 Fervidobacterium islandicum species 0 Fervidobacterium nodosum 0 species 569 1 2424 1 5433 11 17 188709 Thermotogaceae family 0 0 genus Thermotoga 2335 3602 1 11 216 1508419 269 1 0 species Thermotoga caldifontis 93929 273 1 species 0 Thermotoga petrophila species 0 Thermotoga maritima 2336 288 1 1508420 1 479 species 0 Thermotoga profunda 0 no rank 4 1187 2631113 327 1 126738 Thermotoga sp. RQ7 0 species 1 273 126740 Thermotoga sp. RQ2 0 species 0 species Thermotoga sp. 2812B 1157948 252 1 335 1 1157947 Thermotoga sp. Cell2 0 species 1 336 2337 Thermotoga neapolitana species 0 93930 554 1 species 0 Thermotoga naphthophila Pseudothermotoga 0 genus 1 1820 5 163 1643951 Pseudothermotoga elfii species 0 1 435 38322 0 species Pseudothermotoga thermarum 119394 1 357 species 0 Pseudothermotoga hypogea 57487 425 1 Pseudothermotoga lettingae species 0 1 440 177758 0 order Kosmotogales 1643946 4 7 1 1241 1643948 1237 1 11 6 family 0 Kosmotogaceae genus 0 Mesotoga 1184396 1 455 2 4 Mesotoga prima 0 species 451 1 1184387 651456 771 1 1 3 0 genus Kosmotoga 1 360 1330330 Kosmotoga pacifica 0 species 651457 1 410 species 0 Kosmotoga olearia Petrotogales 0 order 8 7 4691 1 1643947 1643949 4684 7 0 family 1511648 741 1 2 2 genus 0 Defluviitoga Defluviitoga tunisiensis species 0 739 1 1006576 genus 0 Petrotoga 28236 2 2 1 754 Petrotoga mobilis species 0 752 1 69499 3 11 1 3189 160798 Marinitoga 0 genus 1642 1 2640159 0 no rank 1642 1 1545835 Marinitoga sp. 1137 0 species 1536 1 149715 Marinitoga piezophila species 0 1 2738859 2022 931 1224 Proteobacteria phylum 0 1807140 3964 6 0 class 225057 6 56 1 3964 0 order Acidithiobacillales 225058 59 5 3908 1 0 family Acidithiobacillaceae Acidithiobacillus 0 genus 1 3849 4 36 119977 920 1323 1 0 species Acidithiobacillus ferrooxidans 0 species Acidithiobacillus caldus 33059 1185 1 Acidithiobacillus ferrivorans species 0 1 1305 160808 1701 5 580370 0 class 5 27 1701 1 580371 Mariprofundales order 0 0 family Mariprofundaceae 580372 11 4 1 1674 377315 1663 1 3 10 0 genus Mariprofundus 979 1 1921086 Mariprofundus aestuarium 0 species Mariprofundus ferrinatatus 0 species 1 674 1921087 class 0 Alphaproteobacteria 28211 558522 1 1980 558 82117 5666 7 no rank 0 1632780 2 76 1 1852 genus 0 Phreatobacter 1776 1 1868589 Phreatobacter sp. S-12 0 species genus 0 Polymorphum 991903 1 1756 2 2 1754 1 991904 Polymorphum gilvum species 0 62654 1 701 clade 0 701 1 767891 0 genus 701 1 767892 Candidatus Puniceispirillum marinum 0 species 2 21 1 1357 213485 Micavibrio genus 0 349221 1336 1 species 0 Micavibrio aeruginosavorus Parvularculales order 0 6 4 290 1 255473 13 3 284 1 255474 Parvularculaceae family 0 2 2 271 1 208215 Parvularcula genus 0 Parvularcula bermudensis 0 species 1 269 208216 order 0 Rhizobiales 356 1 232021 2613 209 255475 35 7 9126 1 0 family Aurantimonadaceae 0 genus Martelella 293088 162 4 1 7411 0 no rank 2629616 2381 1 1 2381 686597 Martelella sp. AD-3 0 species species 0 Martelella endophytica 1486262 2437 1 293089 1 2431 species 0 Martelella mediterranea 1 1680 15 2 414371 Aureimonas genus 0 no rank 0 2615206 1665 1 0 species Aureimonas sp. AU20 1349819 1 1665 118882 20 77 1 10049 0 family Brucellaceae 0 genus Brucella 234 4661 1 2233 14 981386 1 362 species 0 Brucella vulpis 1 53 236 Brucella ovis species 0 187 1 36855 Brucella canis 0 species Brucella melitensis species 0 99 1 29459 Brucella pinnipedialis 0 species 1 203 120576 60 1 444163 Brucella microti species 0 0 no rank 4 1049 2632610 1149952 1 320 species 0 Brucella sp. 09RB8471 Brucella sp. 09RB8910 0 species 355 1 1844051 Brucella sp. 141012304 species 0 345 1 1885919 0 species Brucella sp. 2002734562 1891098 1 29 1 57 235 Brucella abortus 0 species 0 species Brucella ceti 120577 1 219 29461 139 1 species 0 Brucella suis Ochrobactrum 0 genus 5311 1 75 5 528 0 species Ochrobactrum anthropi 529 1239 1 0 species Ochrobactrum sp. A44 271865 1 1270 1383 1 419475 Ochrobactrum pseudogrignonense species 0 571256 1 1344 0 species Ochrobactrum pituitosum 18 33 6396 1 772 Bartonellaceae family 0 773 6363 1 17 42 0 genus Bartonella 423 1 85701 Bartonella tribocorum 0 species 33045 1 312 species 0 Bartonella grahamii species 0 Bartonella vinsonii 33047 1 226 0 species Bartonella apis 1686310 1752 1 803 1 205 0 species Bartonella quintana species 0 Bartonella henselae 38323 1 301 56426 1 338 species 0 Bartonella clarridgeiae 1318743 285 1 0 species Bartonella ancashensis Bartonella australis species 0 1 227 388640 0 no rank 2645622 6 2037 1933904 374 1 species 0 Bartonella sp. WD16.2 Bartonella sp. JB63 species 0 1 442 1933907 Bartonella sp. Raccoon60 0 species 253 1 1933912 Bartonella sp. A1379B species 0 270 1 1933910 1 254 515256 Bartonella sp. 1-1C species 0 species 0 Bartonella sp. JB15 1933906 1 444 215 1 774 Bartonella bacilliformis species 0 Phyllobacteriaceae 0 family 21720 1 174 20 69277 274591 6 2 1 1255 genus 0 Hoeflea 0 no rank 2614931 1 1249 Hoeflea sp. IMCC20628 species 0 1249 1 1620421 0 genus Phyllobacterium 28100 2 54 1 1208 species 0 Phyllobacterium zundukense 1867719 1 1154 0 genus Chelativorans 449972 35 2 910 1 1 875 2643807 0 no rank Chelativorans sp. BNC1 species 0 875 1 266779 Aminobacter 0 genus 50 2 1 2243 31988 83263 1 2193 0 species Aminobacter aminovorans 2 3 837 1 245876 Nitratireductor 0 genus 472175 834 1 species 0 Nitratireductor basaltis 68287 15093 1 387 9 genus 0 Mesorhizobium 0 species Mesorhizobium loti 381 1 1859 Mesorhizobium ciceri 0 species 1 2522 39645 1670800 1 1110 species 0 Mesorhizobium sp. B7 1 1664 325217 no rank 0 0 species Mesorhizobium sp. WSM1497 278153 1 1664 Mesorhizobium australicum 0 species 1465 1 536018 1 1697 2066070 Mesorhizobium japonicum 0 species 1 2244 71433 Mesorhizobium amorphae 0 species Mesorhizobium opportunistum species 0 2145 1 593909 0 no rank 119042 6 4295 Methyloceanibacter 0 genus 1 1126 2 12 1484898 0 species Methyloceanibacter caenitepidi 1384459 1 1114 Pseudorhodoplanes 0 genus 1 1343 2 88 1734920 1235591 1 1255 0 species Pseudorhodoplanes sinuspersici 1572860 2 19 1 1826 genus 0 Hartmannibacter Hartmannibacter diazotrophicus 0 species 1 1807 1482074 family 0 Methylocystaceae 31993 2764 1 6 10 Methylosinus genus 0 1 1311 15 2 425 Methylosinus trichosporium species 0 1296 1 426 genus 0 Methylocystis 133 1 1443 3 14 2625913 686 1 no rank 0 species 0 Methylocystis sp. SC2 187303 1 686 743 1 655015 Methylocystis bryophila species 0 family 0 Chelatococcaceae 2036754 12 4 3305 1 3 112 3293 1 28209 Chelatococcus 0 genus 444444 1 1280 0 species Chelatococcus daeguensis 2638111 1 1901 0 no rank 1901 1 1702325 Chelatococcus sp. CO-6 0 species 1 74900 55 898 82115 Rhizobiaceae 0 family 10 14062 227292 0 no rank 106591 3 21 2580 1 0 genus Ensifer Ensifer sojae species 0 1141 1 716925 106592 1 1418 species 0 Ensifer adhaerens 28105 7 348 11482 1 0 genus Sinorhizobium Sinorhizobium meliloti species 0 1 2923 382 1 3054 663276 species group 0 0 species Sinorhizobium fredii 380 3054 1 Sinorhizobium americanum 0 species 1 1714 194963 2613772 2452 2 0 no rank Sinorhizobium sp. CCBAU 05631 0 species 1 1089 794846 1842534 1 1363 0 species Sinorhizobium sp. RAC02 Sinorhizobium medicae species 0 991 1 110321 227290 36 55977 0 no rank Agrobacterium 0 genus 14302 1 7 197 357 species group 0 1183400 2 7507 5850 1 358 Agrobacterium tumefaciens 0 species species 0 Agrobacterium fabrum 1176649 1657 1 1 1875 373 Agrobacterium vitis 0 species 359 2118 1 0 species Agrobacterium rhizogenes no rank 0 2605 2 2632611 1842536 1 1299 0 species Agrobacterium sp. RAC06 1306 1 861208 Agrobacterium sp. H13-3 species 0 Neorhizobium genus 0 2 11 2981 1 1525371 2970 1 399 Neorhizobium galegae 0 species 379 38694 1 2703 27 0 genus Rhizobium 0 no rank 21 15782 2613769 species 0 Rhizobium sp. NT-26 1125847 1136 1 1703964 1 5 0 species Rhizobium sp. N621 Rhizobium sp. Kim5 species 0 1 794 2020311 Rhizobium sp. N6212 species 0 5 1 1703965 Rhizobium sp. NXC24 0 species 1185 1 2048897 1703961 1 211 0 species Rhizobium sp. N1314 1007 1 1301032 Rhizobium sp. IE4771 0 species species 0 Rhizobium sp. 10195 2028343 1512 1 8 1 1703967 Rhizobium sp. N741 species 0 424182 1187 1 0 species Rhizobium sp. IRBG74 1703966 1 211 0 species Rhizobium sp. N731 1 1202 1869170 Rhizobium sp. S41 0 species 0 species Rhizobium sp. N871 1703968 3 1 Rhizobium sp. N324 0 species 1 1740 1703969 1 7 1703962 Rhizobium sp. N1341 species 0 0 species Rhizobium sp. Y9 1914541 939 1 Rhizobium sp. TAL182 species 0 286 1 2020313 1 2 1703960 Rhizobium sp. N113 0 species 1738 1 2020312 Rhizobium sp. CIAT894 0 species 0 species Rhizobium sp. ACO-34A 1571470 1 1661 0 species Rhizobium sp. NXC14 1981173 1 943 396 1 3016 species 0 Rhizobium phaseoli Rhizobium tropici 0 species 1077 1 398 384 9172 1 species 0 Rhizobium leguminosarum Rhizobium etli species 0 1 4787 29449 0 species Rhizobium gallicum 56730 2157 1 Liberibacter genus 0 1 1287 6 18 34019 0 species Candidatus Liberibacter americanus 309868 1 222 34021 166 1 species 0 Candidatus Liberibacter asiaticus 1 331 556287 Candidatus Liberibacter solanacearum species 0 1273132 1 233 species 0 Liberibacter crescens Candidatus Liberibacter africanus 0 species 317 1 34020 0 genus Shinella 323620 2676 1 9 2 0 no rank 2643062 1 2667 species 0 Shinella sp. HZN7 879274 2667 1 Hyphomicrobiaceae 0 family 1 16394 18 188 45401 Rhodomicrobium genus 0 762 1 7 2 1068 Rhodomicrobium vannielii species 0 1 755 1069 0 genus Rhodoplanes 29407 1919 1 23 2 2619116 1 1896 no rank 0 species 0 Rhodoplanes sp. Z2-YC6860 674703 1 1896 119044 1 621 genus 0 1608628 621 1 0 species Candidatus Filomicrobium marinum 1 5469 4 135 46913 Devosia genus 0 0 no rank 5334 3 196773 Devosia sp. A16 species 0 2256 1 1736675 Devosia sp. I507 species 0 1 1253 2083786 species 0 Devosia sp. H5989 1643450 1 1825 81 1 4627 4 50 genus 0 Hyphomicrobium species 0 Hyphomicrobium nitrativorans 1427356 1 1576 1 1768 2619925 0 no rank 1 1768 717785 Hyphomicrobium sp. MC1 0 species Hyphomicrobium denitrificans species 0 1 1233 53399 59282 2 61 1 1657 genus 0 Blastochloris Blastochloris viridis species 0 1 1596 1079 14 2 1 1151 1082930 Pelagibacterium genus 0 0 species Pelagibacterium halotolerans 531813 1137 1 7 153 1 7315 335928 Xanthobacteraceae 0 family Azorhizobium genus 0 2461 1 43 2 6 1 2418 7 Azorhizobium caulinodans 0 species 51 2 2200 1 152053 Starkeya 0 genus 2149 1 921 Starkeya novella species 0 279 2501 1 2 83 0 genus Xanthobacter 2418 1 280 Xanthobacter autotrophicus 0 species 0 family 119043 2 776 genus 0 Parvibaculum 256616 46 2 776 1 256618 730 1 species 0 Parvibaculum lavamentivorans 0 family 1506 4 45404 532 2 2 1 443 genus 0 Beijerinckia Beijerinckia indica species 0 1 441 533 1063 1 3 2 120652 Methylocella 0 genus 199596 1060 1 species 0 Methylocella silvestris 15 229 26631 1 119045 Methylobacteriaceae 0 family Methylobacterium genus 0 898 9 1 14946 407 1 1710 114616 Methylobacterium nodulans 0 species 1342 1 334852 Methylobacterium oryzae species 0 2071 1 270351 Methylobacterium aquaticum 0 species 0 species Methylobacterium radiotolerans 31998 1 2094 no rank 0 2615210 5276 3 1479019 1 1983 0 species Methylobacterium sp. C1 1 1802 426117 Methylobacterium sp. 4-46 species 0 0 species Methylobacterium sp. AMS5 925818 1491 1 418223 1555 1 species 0 Methylobacterium phyllosphaerae 0 genus Microvirga 186650 1819 1 21 2 1 1798 1882682 Microvirga ossetica 0 species genus 0 2282523 3 9637 1 3042 223967 Methylobacterium populi species 0 408 1 5243 species 0 Methylobacterium extorquens 1352 1 29429 Methylobacterium zatmanii 0 species family 0 Bradyrhizobiaceae 41294 772 26 44231 1 Variibacter 0 genus 71 2 806 1 1649510 735 1 1333996 Variibacter gotjawalensis species 0 genus 0 Bradyrhizobium 374 11 599 23755 1 Bradyrhizobium oligotrophicum species 0 1 2306 44255 3044 1 375 Bradyrhizobium japonicum species 0 0 species Bradyrhizobium diazoefficiens 1355477 4459 1 0 no rank 2631580 12004 6 Bradyrhizobium sp. SK17 0 species 1 2184 2057741 0 species Bradyrhizobium sp. CCGE-LA001 1223566 1725 1 1 1673 115808 Bradyrhizobium sp. ORS 285 0 species 288000 2056 1 0 species Bradyrhizobium sp. BTAi1 376 1 2239 species 0 Bradyrhizobium sp. 114615 1 2127 species 0 Bradyrhizobium sp. ORS 278 1 1343 1274631 Bradyrhizobium icense species 0 1 1265 52 2 40136 Oligotropha 0 genus Oligotropha carboxidovorans species 0 1 1213 40137 Rhodopseudomonas 0 genus 2 128 1 9290 1073 Rhodopseudomonas palustris 0 species 9162 1 1076 genus 0 Nitrobacter 911 3 19 1555 1 Nitrobacter winogradskyi species 0 592 1 913 912 944 1 species 0 Nitrobacter hamburgensis 85413 114 5 6788 1 genus 0 Bosea no rank 0 5190 3 2653178 1792307 1 1602 0 species Bosea sp. PAMC 26642 1842539 1996 1 0 species Bosea sp. RAC05 1592 1 2015316 Bosea sp. AS-1 0 species 1 1484 1526658 Bosea vaviloviae species 0 204455 103326 1 91 654 0 order Rhodobacterales Rhodobacteraceae family 0 90 1638 102672 1 31989 Marinovum 0 genus 25 2 2444 1 367771 42444 2419 1 0 species Marinovum algicola Planktomarina genus 0 2 2 575 1 1284657 species 0 Planktomarina temperata 1284658 1 573 1 2218 2 11 191028 Leisingera 0 genus Leisingera methylohalidivorans 0 species 2207 1 133924 119541 1 790 1 2 0 genus Rhodobaca species 0 Rhodobaca barguzinensis 441209 789 1 Halocynthiibacter genus 0 1 375 2 1 1579315 1579316 1 374 species 0 Halocynthiibacter arcticus 0 genus 1526 1 309512 Dinoroseobacter shibae species 0 1526 1 215813 genus 0 Paracoccus 265 16879 1 334 9 species 0 Paracoccus aminovorans 34004 1 2078 1945662 1 1452 0 species Paracoccus contaminans Paracoccus sp. CBA4604 0 species 1 1949 2065379 Paracoccus denitrificans species 0 1 2428 266 Paracoccus zhejiangensis species 0 1 2871 1077935 246570 1 1630 0 no rank Paracoccus sp. BM15 species 0 1630 1 1529068 species 0 Paracoccus aminophilus 34003 1 1251 Paracoccus yeei species 0 1 2886 147645 1060 1 8797 137 5 0 genus Rhodobacter 196779 2 2464 0 no rank 2033869 1435 1 species 0 Rhodobacter sp. CZR27 1850250 1 1029 species 0 Rhodobacter sp. LPB0142 1063 4065 1 species 0 Rhodobacter sphaeroides 0 species Rhodobacter capsulatus 1061 1 2131 Roseovarius 0 genus 1407 1 2 3 74030 215743 1404 1 species 0 Roseovarius mucosus Octadecabacter 0 genus 1 1266 8 4 53945 0 species Octadecabacter antarcticus 1217908 1 532 1 374 53946 Octadecabacter arcticus 0 species 352 1 1458307 Octadecabacter temperatus species 0 Celeribacter genus 0 5 11 1 5650 875170 Celeribacter indicus 0 species 1842 1 1208324 1 1732 1411902 Celeribacter manganoxidans 0 species 1397108 703 1 0 species Celeribacter marinus 1 1362 1758178 Celeribacter ethanolicus 0 species 1 934 3 2 299261 Tateyamaria 0 genus Tateyamaria omphalii species 0 1 931 299262 0 genus 1 465 1759396 0 no rank 465 1 2622455 Marivivens sp. JLT3646 species 0 465 1 1920883 Roseobacter genus 0 1829 1 3 3 2433 1 979 2434 Roseobacter denitrificans species 0 Roseobacter litoralis species 0 847 1 42443 0 genus Labrenzia 478070 57 4 4467 1 2 2968 2648686 no rank 0 2021862 1467 1 0 species Labrenzia sp. VG12 Labrenzia sp. CP4 0 species 1501 1 1674922 Labrenzia aggregata species 0 1442 1 187304 1 2 1 806 188905 Jannaschia 0 genus no rank 0 1 805 2645469 290400 805 1 0 species Jannaschia sp. CCS1 159345 1 1246 3 2 0 genus Roseibacterium 159346 1243 1 0 species Roseibacterium elongatum 92944 3 12 2696 1 genus 0 Ketogulonicigenium 0 species Ketogulonicigenium robustum 92947 1415 1 92945 1 1269 species 0 Ketogulonicigenium vulgare 227873 37 2 1 3603 genus 0 Pannonibacter 121719 1 3566 0 species Pannonibacter phragmitetus Sulfitobacter 0 genus 33 3 3188 1 60136 0 no rank 1502 1 196795 Sulfitobacter sp. AM1-D1 0 species 1 1502 1917485 species 0 Sulfitobacter pseudonitzschiae 1402135 1653 1 0 genus Rhodovulum 34008 60 4 5607 1 2631432 2 2809 0 no rank 308754 1426 1 species 0 Rhodovulum sp. MB263 1 1383 1564506 Rhodovulum sp. P5 0 species Rhodovulum sulfidophilum species 0 2738 1 35806 58840 2 2189 no rank 0 Rhodobacteraceae bacterium QY30 species 0 1 1476 2033435 Rhodobacteraceae bacterium species 0 1 713 1904441 genus 0 263377 3893 2 Thiobacimonas profunda species 0 1 1770 1229727 0 no rank 2640570 1 2123 species 0 Yangia sp. CCB-MM3 1792508 1 2123 1310 1 1649279 0 genus 1 1310 379347 Ruegeria mobilis 0 species Ruegeria genus 0 3 18 3354 1 97050 2625375 1514 1 no rank 0 292414 1 1514 0 species Ruegeria sp. TM1040 Ruegeria pomeroyi species 0 1822 1 89184 58842 2 25 1 2265 0 genus Sagittula 0 no rank 1 2240 2624628 2240 1 2009329 Sagittula sp. P11 0 species 0 genus 2211641 1 1450 Loktanella vestfoldensis 0 species 1450 1 245188 genus 0 Thalassococcus 436357 9 1 genus 0 Antarctobacter 74032 1 1299 13 2 species 0 Antarctobacter heliothermus 74033 1 1286 Confluentimicrobium genus 0 1731 1 2 2 1609958 0 no rank 2643318 1729 1 1609966 1729 1 species 0 Confluentimicrobium sp. EMB200-NS6 5 100 10930 1 302485 Phaeobacter 0 genus 2971 1 60890 Phaeobacter gallaeciensis species 0 Phaeobacter piscinae species 0 1 3047 1580596 1252 1 1844006 Phaeobacter porticola 0 species species 0 Phaeobacter inhibens 221822 1 3560 0 genus Thioclava 285107 1383 1 2 1 Thioclava nitratireducens species 0 1382 1 1915078 1 2036 2 5 360528 Pelagibaca genus 0 1250539 2031 1 species 0 Pelagibaca abyssi Defluviimonas genus 0 2417 1 14 2 1097466 species 0 Defluviimonas alba 1335048 1 2403 order 0 6 2683 2800060 Hyphomonadaceae family 0 59 6 2683 1 69657 2723 621 1 2 2 genus 0 Hirschia species 0 Hirschia baltica 2724 619 1 Hyphomonas genus 0 1 2003 3 13 85 81032 1144 1 species 0 Hyphomonas neptunium 0 no rank 2630699 846 1 1906738 846 1 0 species Hyphomonas sp. Mor2 204458 20 257 1 26380 0 order Caulobacterales family 0 Caulobacteraceae 76892 19 402 26123 1 401 1 81440 no rank 0 1 401 1759059 Caulobacteraceae bacterium OTSz_A_272 0 species Brevundimonas 0 genus 9569 1 7 183 41275 4597 3 2622653 0 no rank 1865 1 1938605 Brevundimonas sp. LM2 0 species species 0 Brevundimonas sp. DS20 1532555 1 1639 1827469 1 1093 0 species Brevundimonas sp. GW460-12-10-14-LB2 Brevundimonas naejangsanensis 0 species 1 1862 588932 Brevundimonas subvibrioides species 0 1 1465 74313 species 0 Brevundimonas vesicularis 41276 1 1462 0 genus Asticcacaulis 76890 957 1 5 2 Asticcacaulis excentricus species 0 1 952 78587 Phenylobacterium genus 0 2073 1 2 12 20 2061 1 284016 Phenylobacterium zucineum 0 species 75 12721 1 6 175 0 genus Caulobacter no rank 0 2648921 2574 1 366602 1 2574 species 0 Caulobacter sp. K31 88688 2401 1 species 0 Caulobacter segnis 69395 1 1792 species 0 Caulobacter henricii 155892 1 3758 0 species Caulobacter vibrioides 0 species Caulobacter mirabilis 69666 1 2021 0 order Rickettsiales 766 18 53 9012 1 0 no rank 1 476 1699067 1528098 1 476 species 0 Rickettsiales bacterium Ac37b family 0 942 3881 21 943 6 8 1 1957 genus 0 Ehrlichia 322 1 106181 0 no rank Ehrlichia sp. HF 0 species 322 1 391036 106178 4 1627 species group 0 35795 1 344 species 0 Ehrlichia muris Ehrlichia ruminantium 0 species 463 1 779 species 0 Ehrlichia chaffeensis 945 1 378 Ehrlichia canis species 0 1 442 944 283 1 1 4 768 Anaplasma 0 genus 106179 1 116 species group 0 Anaplasma phagocytophilum species 0 116 1 948 1 114 770 Anaplasma marginale 0 species 1 52 769 Anaplasma centrale species 0 3 490 33993 0 genus 33994 231 1 species 0 Neorickettsia helminthoeca 951 110 1 0 species Neorickettsia sennetsu Neorickettsia risticii species 0 149 1 950 0 tribe 952 1151 8 genus 0 Wolbachia 953 8 8 1151 1 2640676 7 1143 no rank 0 1 355 77038 Wolbachia endosymbiont of Drosophila simulans 0 species 1 127 246273 Wolbachia endosymbiont of Cimex lectularius species 0 100901 102 1 0 species Wolbachia endosymbiont of Onchocerca ochengi Wolbachia endosymbiont of Onchocerca volvulus 0 species 1 109 77551 1 184 163164 Wolbachia endosymbiont of Drosophila melanogaster species 0 120 1 80849 Wolbachia endosymbiont of Brugia malayi species 0 species 0 Wolbachia sp. wRi 66084 1 146 775 1 4410 27 1 family 0 Rickettsiaceae 33988 4109 24 0 tribe 0 genus 316 1 69474 784 316 1 0 species Orientia tsutsugamushi Rickettsia genus 0 3793 1 377 23 780 no rank 0 245 1 114295 1 245 337479 Rickettsia endosymbiont of Bemisia tabaci species 0 2 669 114292 0 species group 1 300 785 Rickettsia typhi 0 species 1 369 782 Rickettsia prowazekii species 0 1129742 2 569 species group 0 33990 304 1 0 species Rickettsia bellii 0 species Rickettsia canadensis 788 1 265 species group 0 17 1933 114277 35792 27 1 species 0 Rickettsia parkeri species 0 Rickettsia conorii 781 1 43 1 201 109232 Rickettsia monacensis species 0 54 1 1105106 Rickettsia philipii 0 species 33989 104 1 species 0 Rickettsia amblyommatis 1 44 783 Rickettsia rickettsii 0 species 1 20 35788 Rickettsia africae species 0 95 1 33992 Rickettsia rhipicephali species 0 42862 302 1 0 species Rickettsia felis 345 1 787 Rickettsia australis 0 species Rickettsia montanensis species 0 66 1 33991 35791 51 1 0 species Rickettsia massiliae 68 1 35794 Rickettsia slovaca 0 species Rickettsia akari 0 species 1 236 786 0 species Rickettsia peacockii 47589 153 1 0 species Rickettsia heilongjiangensis 226665 56 1 0 species Rickettsia japonica 35790 68 1 genus 0 Candidatus Phycorickettsia 2115980 1 300 2 2 1 298 2115978 Candidatus Phycorickettsia trachydisci species 0 227 1 3 9 1328881 Candidatus Midichloriaceae family 0 0 genus Candidatus Midichloria 411566 2 1 1 218 234827 217 1 0 species Candidatus Midichloria mitochondrii 204441 1 89344 65 963 order 0 Rhodospirillales family 0 Rhodospirillaceae 41295 30 903 53728 1 0 genus Nitrospirillum 1543705 1 4766 35 2 Nitrospirillum amazonense species 0 4731 1 28077 0 genus Magnetospirillum 13134 178 5 1 11330 2617991 2 5336 0 no rank 1639348 2603 1 species 0 Magnetospirillum sp. ME-1 1 2733 1663591 Magnetospirillum sp. XM-1 species 0 1 3199 55518 Magnetospirillum gryphiswaldense species 0 Magnetospirillum magneticum species 0 1 2617 84159 Tistrella genus 0 1 2898 72 2 171436 species 0 Tistrella mobilis 171437 2826 1 1182780 1 1204 2 2 0 genus Magnetospira 0 no rank 1 1202 2685734 1202 1 1288970 Magnetospira sp. QH-2 0 species 168934 3 37 1 3560 genus 0 Thalassospira 1687 1 2048283 Thalassospira sp. CSC3H3 0 species Thalassospira xiamenensis species 0 1836 1 220697 0 genus Pararhodospirillum 1612157 2 27 1617 1 1084 1 1590 species 0 Pararhodospirillum photometricum 1263978 314 1 genus 0 1263979 314 1 species 0 Candidatus Endolissoclinum faulkneri Niveispirillum 0 genus 30 2 2730 1 1543704 1612173 1 2700 species 0 Niveispirillum cyanobacteriorum 0 genus Haematospirillum 1804663 414 1 2 8 1549855 1 406 0 species Haematospirillum jordaniae Azospirillum genus 0 1 19136 281 5 191 5795 1 192 Azospirillum brasilense 0 species 0 species Azospirillum thiophilum 528244 4305 1 Azospirillum lipoferum 0 species 1 7065 193 1 1690 1226968 Azospirillum humicireducens 0 species genus 0 Rhodospirillum 1081 4856 1 3 34 Rhodospirillum centenum 0 species 1 2775 34018 1 2047 1085 Rhodospirillum rubrum 0 species Acetobacteraceae 0 family 34653 1 34 591 433 89583 1 1539 2 35 genus 0 Gluconacetobacter 1 1504 33996 Gluconacetobacter diazotrophicus species 0 0 genus Acetobacter 434 8 91 1 9444 750 1 65959 Acetobacter pomorum species 0 Acetobacter senegalensis species 0 1 1727 446692 subgenus 0 1 1043 151157 1043 1 435 Acetobacter aceti 0 species Acetobacter oryzifermentans 0 species 587 1 1633874 1 1350 1076596 Acetobacter persici 0 species 1 2414 438 Acetobacter pasteurianus 0 species 0 species Acetobacter tropicalis 104102 1 1482 320496 731 1 13 2 genus 0 Neoasaia 320497 718 1 species 0 Neoasaia chiangmaiensis 91914 725 1 4 2 0 genus Asaia Asaia bogorensis species 0 721 1 91915 125216 163 3 1 5427 0 genus Roseomonas 2617492 2812 1 0 no rank Roseomonas sp. FDAARGOS_362 0 species 1 2812 2018065 0 species Roseomonas gilardii 257708 2452 1 364409 2711 1 2 39 genus 0 Granulibacter Granulibacter bethesdensis species 0 2672 1 364410 441 1 2988 3 27 0 genus Gluconobacter Gluconobacter oxydans species 0 1801 1 442 species 0 Gluconobacter albidus 318683 1160 1 522 1 2606 59 3 genus 0 Acidiphilium 62140 1209 1 0 species Acidiphilium multivorum 0 species Acidiphilium cryptum 524 1 1338 genus 0 1602345 1 783 0 species Parasaccharibacter apium 1510841 1 783 5 136 6247 1 1434011 Komagataeibacter 0 genus 33995 1 823 0 species Komagataeibacter europaeus 265960 1 1283 0 species Komagataeibacter nataicola species 0 Komagataeibacter medellinensis 1177712 841 1 28448 3164 1 species 0 Komagataeibacter xylinus genus 0 Kozakia 153497 3 2 1 861 Kozakia baliensis 0 species 1 858 153496 1191478 3 21 939 1 order 0 Magnetococcales family 0 Magnetococcaceae 1191479 1 918 1 2 917 1 162171 0 genus species 0 Magnetococcus marinus 1124597 1 917 993 2 2800059 order 0 family 0 2800061 2 993 74317 1 993 27 2 0 genus Maricaulis 74318 966 1 species 0 Maricaulis maris 8 2 1 2217 54526 Pelagibacterales 0 order Candidatus Fonsibacter genus 0 1 2 1 542 2045213 species 0 Candidatus Fonsibacter ubiquis 1925548 1 541 family 0 1673 5 1655514 Candidatus Pelagibacter genus 0 783 1 3 12 198251 253 1 2647897 0 no rank Candidatus Pelagibacter sp. IMCC9063 0 species 1 253 1002672 198252 1 518 0 species Candidatus Pelagibacter ubique 2 890 1655516 0 no rank 1 359 744985 alpha proteobacterium HIMB59 species 0 alpha proteobacterium HIMB5 species 0 531 1 859653 7 4 1 1032 1921002 Holosporales order 0 1 2 193 1 2100208 Caedimonadaceae 0 family 1 192 1509243 0 genus species 0 Candidatus Nucleicultrix amoebiphila 1509244 192 1 1 406 3 1 1777752 Candidatus Paracaedibacteraceae 0 family Candidatus Paracaedibacter genus 0 405 1 3 2 1521255 91604 402 1 0 species Candidatus Paracaedibacter acanthamoebae family 0 1 429 44746 no rank 0 204454 1 429 0 species endosymbiont of Acanthamoeba sp. UWC8 86106 1 429 204457 738 82 82639 1 0 order Sphingomonadales 41297 59 802 63482 1 family 0 Sphingomonadaceae Sphingorhabdus genus 0 1372 1 40 3 1434046 0 no rank 1332 2 2614947 634 1 2077182 Sphingorhabdus sp. YGSMI21 0 species Sphingorhabdus sp. M41 species 0 698 1 1806885 1 1056 2685927 genus 0 species 0 Sphingomonas sp. JJ-A5 1921510 1 1056 genus 0 Novosphingobium 165696 1 6044 86 5 1 1775 158500 Novosphingobium resinovorum 0 species 205844 1387 1 species 0 Novosphingobium pentaromativorans 2644732 1386 1 no rank 0 702113 1386 1 0 species Novosphingobium sp. PP1Y Novosphingobium aromaticivorans 0 species 1 1410 48935 Rhizorhabdus genus 0 2 8 1426 1 1649486 1850238 1 1418 species 0 Rhizorhabdus dicambivorans genus 0 2709685 1 700 Sphingorhabdus flavimaris species 0 700 1 266812 150203 1 816 28 2 0 genus Blastomonas 1 788 2626550 0 no rank Blastomonas sp. RAC04 0 species 1 788 1842535 72173 2 59 1 1455 genus 0 Citromicrobium 2630544 1396 1 0 no rank 1634516 1 1396 species 0 Citromicrobium sp. JL477 541 2 5 1168 1 0 genus Zymomonas 0 species Zymomonas mobilis 542 1163 1 13687 15 366 1 22208 0 genus Sphingomonas 397260 1 1913 species 0 Sphingomonas sanxanigenens 1549858 1 1536 species 0 Sphingomonas taxi Sphingomonas wittichii species 0 1 3411 2 1818 160791 strain 0 Sphingomonas sp. DC-6 1283312 1593 1 6 9367 196159 no rank 0 1 1382 1938607 Sphingomonas sp. LM7 0 species Sphingomonas sp. KC8 0 species 1291 1 1030157 0 species Sphingomonas sp. LK11 1390395 1 2170 745310 1 1782 species 0 Sphingomonas sp. MM-1 Sphingomonas sp. NIC1 0 species 1 1781 1961362 1 961 1327635 Sphingomonas sp. Cra20 species 0 0 species Sphingomonas melonis 152682 1463 1 Sphingomonas koreensis 0 species 1 1223 93064 1 1173 1609977 Sphingomonas hengshuiensis 0 species species 0 Sphingomonas panacis 1560345 1 1756 genus 0 Sphingobium 165695 421 15 17300 1 0 species Sphingobium japonicum 332056 1083 1 76947 1 890 species 0 Sphingobium herbicidovorans Sphingobium yanoikuyae 0 species 1688 1 13690 1123 1 120107 Sphingobium cloacae species 0 0 species Sphingobium indicum 332055 1 1181 1673076 1 1327 0 species Sphingobium hydrophobicum Sphingobium chlorophenolicum species 0 1 1389 46429 0 species Sphingobium baderi 1332080 1 1323 2611147 6875 6 0 no rank species 0 Sphingobium sp. EP60837 1855519 1 979 1555 1 1315974 Sphingobium sp. TKS 0 species Sphingobium sp. RAC03 0 species 1081 1 1843368 407020 1 832 0 species Sphingobium sp. MI1205 484429 1 1333 species 0 Sphingobium sp. YBL2 1095 1 627192 Sphingobium sp. SYK-6 0 species 181 10 9135 1 165697 Sphingopyxis genus 0 Sphingopyxis fribergensis 0 species 1 745 1515612 species 0 Sphingopyxis macrogoltabida 33050 1 2092 879 1 117207 Sphingopyxis alaskensis 0 species 1 708 33052 Sphingopyxis terrae 0 species Sphingopyxis granuli 0 species 1 1197 267128 2614943 4 3333 no rank 0 1 1197 1357916 Sphingopyxis sp. QXT-31 species 0 Sphingopyxis sp. LPB0140 species 0 1 491 1913578 292913 758 1 species 0 Sphingopyxis sp. 113P3 Sphingopyxis sp. MG species 0 1 887 1866325 Erythrobacteraceae 0 family 22 211 18419 1 335929 2 1308 2800686 0 genus Altererythrobacter dongtanensis species 0 688 1 692370 1982042 1 620 species 0 Altererythrobacter mangrovi 0 genus 2800681 2 1756 1648404 1 843 0 species Erythrobacter atlanticus 913 1 502682 Erythrobacter gangjinensis 0 species genus 0 938 1 2800685 0 species Altererythrobacter marensis 543877 938 1 genus 0 1855416 1746 2 192812 700 1 0 species Erythrobacter flavus species 0 Erythrobacter seohaensis 266951 1046 1 0 genus Croceicoccus 1295327 2902 1 3 44 Croceicoccus naphthovorans 0 species 1030 1 1348774 450378 1828 1 species 0 Croceicoccus marinus 2800788 6 5576 no rank 0 1111 1 2410 43 3 genus 0 Porphyrobacter no rank 0 2683265 2 2367 Porphyrobacter HT-58-2 0 species 982 1 2023229 1896196 1 1385 species 0 Porphyrobacter sp. LM 6 genus 0 Erythrobacter 1041 1 3166 101 3 species 0 Porphyrobacter neustonensis 1112 1 1081 39960 1984 1 species 0 Erythrobacter litoralis Altererythrobacter genus 0 98 4 1 2419 361177 Altererythrobacter ishigakiensis 0 species 533 1 476157 0 species Altererythrobacter atlanticus 1267766 1 927 Altererythrobacter epoxidivorans species 0 861 1 361183 2800682 1563 1 0 genus species 0 Altererythrobacter namhicola 645517 1563 1 350 1280 499332 1 28216 Betaproteobacteria 0 class Rhodocyclales order 0 25446 1 329 22 206389 628 12 18315 1 2008794 Zoogloeaceae 0 family 33057 10688 1 6 256 genus 0 Thauera species 0 Thauera chlorobenzoica 96773 1629 1 2609274 2 5143 no rank 0 1 2138 85643 Thauera sp. MZ1T species 0 1 3005 2005884 Thauera sp. K11 0 species Thauera aromatica species 0 1 1376 59405 2284 1 1134435 Thauera humireducens species 0 Azoarcus genus 0 1 6999 5 219 12960 2 3733 2629479 0 no rank Azoarcus sp. KH32C species 0 1 1725 748247 198107 2008 1 0 species Azoarcus sp. CIB species 0 Azoarcus olearius 418699 1 1425 2067960 1622 1 species 0 Azoarcus sp. SY39 Rhodocyclaceae family 0 5588 1 6 148 75787 2 36 1413 1 551759 Aromatoleum genus 0 551760 1 1377 species 0 Aromatoleum aromaticum 40 2 2928 1 146937 Azospira 0 genus 2888 1 146939 Azospira oryzae 0 species 1 1099 75788 0 no rank 1898103 1 1099 0 species Rhodocyclaceae bacterium 2008795 1 1214 3 28 0 family Azonexaceae genus 0 Dechloromonas 73029 1 1186 2 42 259537 1144 1 species 0 Dechloromonas aromatica 2 1815 33809 0 no rank 1 1461 1904640 Betaproteobacteria bacterium GR16-43 0 species beta proteobacterium CB species 0 1 354 543913 119066 12 2688 no rank 0 78 1 1301080 genus 0 Candidatus Nasuia deltocephalinicola 0 species 78 1 1160784 53 1 189384 0 genus 189385 53 1 0 species Candidatus Tremblaya princeps 42 2 1 1134 327159 Candidatus Accumulibacter genus 0 0 species Candidatus Accumulibacter phosphatis 327160 1 1092 33055 1 1317 6 6 genus 0 Kinetoplastibacterium 0 species Candidatus Kinetoplastibacterium galatii 994695 210 1 233181 1 306 0 species Kinetoplastibacterium blastocrithidii 208 1 994696 Candidatus Kinetoplastibacterium oncopeltii 0 species 0 species Candidatus Kinetoplastibacterium crithidii 33056 223 1 species 0 Candidatus Kinetoplastibacterium desouzaii 994692 364 1 genus 0 Candidatus Profftella 1381133 106 1 2 1 669502 1 105 0 species Candidatus Profftella armatura 0 order Burkholderiales 80840 234 5199 408717 1 Alcaligenaceae family 0 663 42 80034 1 506 517 986 17 1 35992 genus 0 Bordetella 463024 1994 1 0 species Bordetella genomosp. 6 1120 1 35814 Bordetella holmesii 0 species 1 2517 1416806 Bordetella genomosp. 8 0 species 1 1693 463014 Bordetella flabilis 0 species species 0 Bordetella bronchialis 463025 2765 1 0 species Bordetella parapertussis 519 1 2471 1331258 1 2592 species 0 Bordetella pseudohinzii species 0 Bordetella pertussis 520 1 1723 0 species Bordetella petrii 94624 1956 1 Bordetella hinzii species 0 2418 1 103855 521 1 982 0 species Bordetella avium Bordetella trematum 0 species 2075 1 123899 463040 1 2133 species 0 Bordetella genomosp. 13 4122 1 518 Bordetella bronchiseptica species 0 1416803 1 1887 species 0 Bordetella genomosp. 9 2558 1 2630031 no rank 0 1697043 2558 1 0 species Bordetella sp. H567 genus 0 Advenella 290425 2024 1 32 3 Advenella kashmirensis 0 species 835 1 310575 1157 1 302406 Advenella mimigardefordensis species 0 genus 0 Orrella 1921582 1 3591 2 46 1851544 3545 1 0 species Orrella dioscoreae 0 genus 1 262 1100891 262 1 643674 Paenalcaligenes hominis 0 species 0 genus 1 408 1472344 0 species Basilea psittacipulmonis 1472345 1 408 29574 3 3 685 1 0 genus Taylorella 0 species Taylorella asinigenitalis 84590 1 227 1 455 29575 Taylorella equigenitalis species 0 47 2 2564 1 359336 Castellaniella genus 0 75697 2517 1 0 species Castellaniella defragrans 0 genus Pusillimonas 305976 4 2 1 1059 no rank 0 1 1055 2640016 Pusillimonas sp. T7-7 species 0 1 1055 1007105 0 genus Oligella 90243 2 32 480 1 Oligella urethralis 0 species 448 1 90245 Alcaligenes 0 genus 2 28 1 2124 507 Alcaligenes faecalis species 0 2096 1 511 Achromobacter 0 genus 30182 1 827 6 222 species 0 Achromobacter spanius 217203 5056 1 no rank 0 1 3113 2626865 1758194 1 3113 species 0 Achromobacter sp. AONIH1 6410 1 32002 Achromobacter denitrificans 0 species 1 2784 217204 Achromobacter insolitus 0 species 11992 1 85698 Achromobacter xylosoxidans 0 species 0 no rank 224471 17 25523 Mitsuaria genus 0 2 197 1 2813 65047 2616 1 2648776 no rank 0 species 0 Mitsuaria sp. 7 1658665 2616 1 316612 37 2 1 1970 genus 0 Methylibium 105560 1 1933 0 species Methylibium petroleiphilum 0 genus Thiomonas 32012 2901 1 33 2 926 1 2868 0 species Thiomonas intermedia 318147 2717 1 2 60 genus 0 Paucibacter 2642959 1 2657 no rank 0 Paucibacter sp. KCTC 42545 species 0 1 2657 1768242 2 66 1 2757 88 Leptothrix 0 genus 34029 2691 1 species 0 Leptothrix cholodnii 45 2 3466 1 93681 Roseateles 0 genus Roseateles depolymerans species 0 1 3421 76731 [Polyangium] brachysporum 0 species 2194 1 413882 2 50 2820 1 212743 Rhizobacter genus 0 946333 1 2770 species 0 Rhizobacter gummiphilus Rubrivivax genus 0 93 2 1 3885 28067 28068 1 3792 0 species Rubrivivax gelatinosus Burkholderiaceae 0 family 84 1045 138700 1 119060 2571159 629 1 0 genus 629 1 412963 Paraburkholderia rhizoxinica 0 species Polynucleobacter 0 genus 1 4 1 884 44013 1 193 576610 Polynucleobacter necessarius 0 species Polynucleobacter duraquae species 0 371 1 1835254 1 319 576611 Polynucleobacter asymbioticus 0 species 0 genus Cupriavidus 106589 9 724 22035 1 367825 2954 1 species 0 Cupriavidus sp. USMAA1020 119219 1863 1 0 species Cupriavidus metallidurans 1689 1 82541 Cupriavidus gilardii 0 species 248026 1 1676 species 0 Cupriavidus pinatubonensis 106590 4735 1 0 species Cupriavidus necator 0 species Cupriavidus basilensis 68895 2505 1 5889 2 2640874 no rank 0 Cupriavidus sp. USMAA2-4 0 species 3068 1 876364 1389192 2821 1 0 species Cupriavidus sp. USMAHM13 genus 0 Burkholderia 32008 64686 1 3236 41 4078 1 28095 Burkholderia gladioli 0 species species group 0 87882 33201 19 1 1005 488732 Burkholderia diffusa 0 species Burkholderia pyrrocinia species 0 1 748 60550 5671 1 292 Burkholderia cepacia 0 species 1 1335 1207504 Burkholderia pseudomultivorans 0 species 0 species Burkholderia metallica 488729 1 684 Burkholderia cenocepacia 0 species 5297 1 95486 695 1 152500 Burkholderia dolosa species 0 Burkholderia stabilis species 0 1 1832 95485 Burkholderia ubonensis species 0 1 3352 101571 1 727 488446 Burkholderia latens species 0 species 0 Burkholderia territorii 1503055 1 663 Burkholderia multivorans species 0 1 2257 87883 species 0 Burkholderia stagnalis 1503054 1077 1 Burkholderia seminalis 0 species 1 998 488731 Burkholderia lata 0 species 1 1931 482957 species 0 [Pseudomonas] mesoacidophila 265293 1160 1 0 species Burkholderia contaminans 488447 1 930 1 1280 152480 Burkholderia ambifaria 0 species 0 species Burkholderia vietnamiensis 60552 1 1559 337 2717 1 0 species Burkholderia glumae 0 species group 7 8906 111527 1637831 738 1 0 species Burkholderia sp. MSMB617WGS species 0 Burkholderia pseudomallei 28450 2368 1 1637841 1 865 species 0 Burkholderia sp. MSMB0852 1252 1 342113 Burkholderia oklahomensis 0 species Burkholderia sp. MSMB0266 0 species 868 1 1637837 723 1 13373 Burkholderia mallei species 0 0 species Burkholderia thailandensis 57975 2092 1 1768 1 41899 Burkholderia plantarii 0 species 10780 11 2613784 no rank 0 0 species Burkholderia sp. RPE67 758796 1 1447 1678678 984 1 species 0 Burkholderia sp. HB1 1 835 1795043 Burkholderia sp. PAMC 26561 species 0 Burkholderia sp. CCGE1001 0 species 1 1123 640510 species 0 Burkholderia sp. CCGE1003 640512 941 1 Burkholderia sp. YI23 0 species 1531 1 1097668 Burkholderia sp. Bp5365 0 species 1 613 1740162 Burkholderia sp. 2002721687 0 species 1 652 1468409 Burkholderia sp. KJ006 species 0 1 851 416344 1795874 1 622 species 0 Burkholderia sp. PAMC 28687 Burkholderia sp. Bp7605 0 species 1181 1 1740163 Ralstonia genus 0 288 5 1 18270 48736 1 2718 105219 Ralstonia mannitolilytica species 0 Ralstonia pickettii species 0 3994 1 329 1 8794 305 Ralstonia solanacearum 0 species Ralstonia insidiosa 0 species 2476 1 190721 genus 0 1827195 1552 1 Burkholderia sp. RPE64 species 0 1 1552 758793 93217 10 270 12521 1 0 genus Pandoraea Pandoraea apista 0 species 1605 1 93218 1 1024 93222 Pandoraea sputorum species 0 species 0 Pandoraea oxalativorans 573737 1 1197 1 1191 445709 Pandoraea thiooxydans species 0 Pandoraea vervacti 0 species 1650 1 656178 93220 1403 1 0 species Pandoraea pnomenusa Pandoraea norimbergensis species 0 1 1382 93219 0 species Pandoraea pulmonicola 93221 1463 1 0 species Pandoraea faecigallinarum 656179 1336 1 Paraburkholderia genus 0 17078 1 12 273 1822464 Paraburkholderia xenovorans species 0 1348 1 36873 Paraburkholderia sprentiae 0 species 1242 1 948107 311230 1 1416 0 species Paraburkholderia terrae species 0 Paraburkholderia phymatum 148447 1591 1 0 no rank 1255 1 2615204 0 species Paraburkholderia sp. SOS3 1926494 1255 1 1 1613 169430 Paraburkholderia hospita 0 species 261302 1349 1 species 0 Paraburkholderia phytofirmans species 0 Paraburkholderia aromaticivorans 2026199 1591 1 1 2433 75105 Paraburkholderia caribensis 0 species species 0 Paraburkholderia phenoliruptrix 252970 1 1386 1 1581 134537 Paraburkholderia fungorum 0 species family 0 Comamonadaceae 80864 59 1658 1 108659 47420 1 6306 83 4 genus 0 Hydrogenophaga 2 4951 2610897 0 no rank Hydrogenophaga sp. RAC07 0 species 2119 1 1842537 795665 2832 1 species 0 Hydrogenophaga sp. PBC Hydrogenophaga crassostreae 0 species 1272 1 1763535 0 genus 2678886 2691 1 1 2691 2116657 Melaminivora sp. SC2-7 species 0 0 genus Rhodoferax 28065 8306 1 5 25 192843 1568 1 0 species Rhodoferax ferrireducens 1842727 1 2733 species 0 Rhodoferax koreense 0 species Rhodoferax saidenbachensis 1484693 1 1898 1 2082 81479 Rhodoferax antarcticus species 0 34072 14331 1 5 372 0 genus Variovorax 34073 1 6257 species 0 Variovorax paradoxus 1 2924 436515 Variovorax boronicumulans species 0 no rank 0 4778 2 663243 1 3308 2126319 Variovorax sp. PMC12 species 0 Variovorax sp. PAMC 28711 species 0 1 1470 1795631 Ottowia 0 genus 10 3 1 4785 219181 Ottowia sp. KADR8-3 species 0 1 2340 2109914 2435 1 2645081 no rank 0 0 species Ottowia sp. oral taxon 894 1658672 1 2435 1 5375 2 21 174951 Ramlibacter 0 genus 5354 1 94132 Ramlibacter tataouinensis species 0 1649468 31 2 2700 1 0 genus Melaminivora 0 no rank 1 2669 2641902 Melaminivora sp. SC2-9 species 0 1 2669 2109913 80865 15161 1 528 5 0 genus Delftia 2613839 7634 2 0 no rank Delftia sp. Cs1-4 0 species 3857 1 742013 1 3777 1920191 Delftia sp. HK171 species 0 species 0 Delftia tsuruhatensis 180282 1 3607 80866 3392 1 species 0 Delftia acidovorans 6 2 1 2338 238749 Diaphorobacter 0 genus Diaphorobacter polyhydroxybutyrativorans species 0 1 2332 1546149 genus 0 Polaromonas 52972 1 4123 24 3 no rank 0 1 1945 2638319 1945 1 296591 Polaromonas sp. JS666 species 0 Polaromonas naphthalenivorans species 0 1 2154 216465 0 genus 2769 2 2490452 1458426 1 1573 species 0 Comamonadaceae bacterium B1 1 1196 1458425 Comamonadaceae bacterium A1 0 species Candidatus Symbiobacter genus 0 1 2 705 1 1436289 species 0 Candidatus Symbiobacter mobilis 1436290 1 704 364316 2 10 1652 1 0 genus Verminephrobacter 0 species Verminephrobacter eiseniae 364317 1 1642 0 genus Alicycliphilus 201096 25 2 1 3300 179636 3275 1 species 0 Alicycliphilus denitrificans 283 4 56 1 9171 genus 0 Comamonas 1082851 1 2443 species 0 Comamonas serinivorans species 0 Comamonas testosteroni 285 4114 1 2558 1 225992 Comamonas kerstersii 0 species 12916 9 611 1 19299 0 genus Acidovorax 80867 2489 1 0 species Acidovorax avenae species 0 Acidovorax sp. NA3 553814 1711 1 0 no rank 2684926 10618 4 0 species Acidovorax sp. JS42 232721 2146 1 3026 1 358220 Acidovorax sp. KKS102 0 species Acidovorax sp. T1 species 0 1 2663 1858609 2783 1 1842533 Acidovorax sp. RAC01 species 0 Acidovorax citrulli 0 species 1847 1 80869 2023 1 721785 Acidovorax ebreus 0 species Simplicispira 0 genus 1943 1 31 2 352450 Simplicispira sp. SC1-8 species 0 1 1912 2109915 Limnohabitans 0 genus 2046 1 10 3 665874 no rank 0 2626134 2 2036 Limnohabitans sp. 63ED37-2 species 0 1327 1 1678128 0 species Limnohabitans sp. 103DPR2 1678129 1 709 no rank 0 2 4876 80841 1 952 1469502 Burkholderiales bacterium GJ-E10 0 species 0 species Burkholderiales bacterium YL45 1834205 3924 1 75682 385 29 45726 1 family 0 Oxalobacteraceae 202907 122 4 6976 1 0 genus Collimonas Collimonas fungivorans species 0 1 2443 158899 0 species Collimonas arenae 279058 2394 1 279113 1 2017 0 species Collimonas pratensis 0 genus Massilia 149698 6 215 1 14596 2609279 6276 2 0 no rank 1707785 1 3236 species 0 Massilia sp. WG5 0 species Massilia sp. NR 4-1 1678028 1 3040 Massilia putida species 0 2064 1 1141883 0 species Massilia sp. B2 2045208 2087 1 2072590 3954 1 0 species Massilia sp. ZMN-3 846 2 1 1078 1 0 genus Oxalobacter Oxalobacter formigenes species 0 1 1077 847 0 genus Herminiimonas 303379 6 3 1 1040 1 468 1809410 Herminiimonas arsenitoxidans species 0 Herminiimonas arsenicoxydans species 0 1 566 204773 7 116 10736 1 29580 Janthinobacterium genus 0 Janthinobacterium agaricidamnosum species 0 1650 1 55508 368607 1 2338 species 0 Janthinobacterium svalbardensis 4 6632 2610881 no rank 0 1 818 1236179 Janthinobacterium sp. B9-8 species 0 1 2823 1938606 Janthinobacterium sp. LM6 0 species 1644131 1 2298 0 species Janthinobacterium sp. 1_2014MBL_MicDiv Janthinobacterium sp. Marseille 0 species 693 1 375286 1 10915 327 6 963 Herbaspirillum 0 genus 0 species Herbaspirillum rubrisubalbicans 80842 1 2515 1 983 2624150 0 no rank 2025949 1 983 species 0 Herbaspirillum sp. meg3 0 species Herbaspirillum seropedicae 964 1 2747 92645 1 2984 0 species Herbaspirillum frisingense 341045 1359 1 0 species Herbaspirillum hiltneri order 0 Neisseriales 206351 39026 1 598 35 Neisseriaceae family 0 1 19500 251 21 481 59 44 3 1 1845 0 genus Vitreoscilla Vitreoscilla filiformis species 0 1498 1 63 2627922 1 303 0 no rank species 0 Vitreoscilla sp. C1 96942 1 303 482 1 14226 270 12 0 genus Neisseria 764 1 28091 Neisseria weaveri 0 species 485 1 810 species 0 Neisseria gonorrhoeae species 0 Neisseria sicca 490 1136 1 0 no rank 3008 2 2623750 Neisseria sp. KEM232 0 species 2266 1 655307 1853276 742 1 0 species Neisseria sp. 10022 1 949 326523 Neisseria zoodegmatis species 0 1127 1 486 Neisseria lactamica 0 species 1066 1 495 Neisseria elongata species 0 488 1 1026 0 species Neisseria mucosa 0 species Neisseria meningitidis 487 1 3044 Neisseria sp. 10023 0 species 1026 1 1853278 0 genus 507 1 71 1 507 72 Simonsiella muelleri species 0 18 2 1484 1 538 Eikenella 0 genus species 0 Eikenella corrodens 539 1 1466 0 no rank 450 1 421605 2052837 1 450 0 species Neisseriaceae bacterium DSM 100970 1193515 737 1 0 genus species 0 Snodgrassella alvi 1196083 737 1 Chromobacteriaceae 0 family 18928 1 325 13 1499392 0 genus Jeongeupia 885864 1 1558 2 35 0 no rank 1 1523 2619593 species 0 Jeongeupia sp. USM3 1906741 1 1523 0 genus Pseudogulbenkiania 568394 23 2 1 2293 0 no rank 2270 1 2642558 2270 1 748280 Pseudogulbenkiania sp. NH8B species 0 187 2 77 1 2036 genus 0 Aquaspirillum 0 no rank 2620219 1 1959 Aquaspirillum sp. LM1 species 0 1959 1 1938604 no rank 0 90153 10399 4 171 4 10399 1 535 Chromobacterium 0 genus 1 2944 2641838 0 no rank 2059672 2944 1 species 0 Chromobacterium sp. ATCC 53434 3030 1 536 Chromobacterium violaceum species 0 Chromobacterium vaccinii species 0 4254 1 1108595 168470 2317 1 25 2 genus 0 Laribacter Laribacter hongkongensis species 0 2292 1 168471 1 20360 137 44 32003 Nitrosomonadales 0 order Gallionellaceae 0 family 5 144 1 2605 90627 314343 19 2 1650 1 genus 0 Sideroxydans 63745 1631 1 species 0 Sideroxydans lithotrophicus 96 811 1 2 16 genus 0 Gallionella 370405 795 1 species 0 Gallionella capsiferriformans 1086 1 3 5 2008790 Thiobacillaceae family 0 919 9 2 1081 1 0 genus Thiobacillus 36861 1072 1 0 species Thiobacillus denitrificans 0 family 2772226 2087 4 935200 2 62 1 884 0 genus Sulfuricella 822 1 649841 Sulfuricella denitrificans species 0 0 genus Sulfuriferula 1778653 1 1203 2 2 1 1201 2637784 no rank 0 Sulfuriferula sp. AH1 species 0 1 1201 1985873 206379 12 12 1 5336 0 family Nitrosomonadaceae 35798 1 2086 4 11 genus 0 Nitrosospira 330 1 1231 Nitrosospira multiformis species 0 Nitrosospira briensis species 0 1 986 35799 759 1 1288494 Nitrosospira lacus species 0 914 8 7 3238 1 genus 0 Nitrosomonas 2 931 2609265 0 no rank 404 1 153948 Nitrosomonas sp. AL212 species 0 Nitrosomonas sp. Is79A3 0 species 527 1 261292 species 0 Nitrosomonas eutropha 916 412 1 species 0 Nitrosomonas ureae 44577 1 495 478 1 44574 Nitrosomonas communis 0 species 0 species Nitrosomonas europaea 915 1 914 0 family Sterolibacteriaceae 2008793 5 70 1 4064 genus 0 Methyloversatilis 378210 29 2 1 2165 0 no rank 2136 1 2639971 0 species Methyloversatilis sp. RAC08 1842540 1 2136 0 genus Sulfuritalea 1054211 2 84 1829 1 748811 1745 1 species 0 Sulfuritalea hydrogenivorans 5045 1 14 14 32011 Methylophilaceae 0 family Methylotenera genus 0 28 3 1 627 359407 species 0 Methylotenera versatilis 1055487 326 1 359408 273 1 species 0 Methylotenera mobilis 1 602 2 3 1679002 Candidatus Methylopumilus genus 0 274 1 1581680 Candidatus Methylopumilus turicensis species 0 0 species Candidatus Methylopumilus planktonicus 1581557 1 326 3 53 1 2316 81682 Methylovorus genus 0 0 no rank 1158 1 2634027 1158 1 887061 Methylovorus sp. MP688 0 species 266009 1105 1 species 0 Methylovorus glucosotrophus 2 5 1 1159 404 Methylobacillus 0 genus 1154 1 405 Methylobacillus flagellatus species 0 327 1 5 2 16 Methylophilus 0 genus 0 no rank 2630143 322 1 0 species Methylophilus sp. TWE2 1662285 322 1 263678 201 68525 0 subphylum 1 176665 466 128 28221 Deltaproteobacteria class 0 666 26 1 53186 213115 Desulfovibrionales order 0 72 4 4326 1 213116 Desulfomicrobiaceae family 0 genus 0 Desulfomicrobium 898 29 3 4254 1 species 0 Desulfomicrobium orale 132132 1956 1 0 species Desulfomicrobium baculatum 899 1 2269 family 0 Desulfohalobiaceae 213117 3 1 1 773 45662 2 2 772 1 0 genus Desulfohalobium 0 species Desulfohalobium retbaense 45663 1 770 47421 1 18 351 194924 Desulfovibrionaceae 0 family 41707 1 549 2 28 genus 0 Lawsonia 29546 1 521 0 species Lawsonia intracellularis 0 genus 1 2497 2582840 0 species Desulfovibrio africanus 873 2497 1 0 genus 2082 1 2794998 species 0 Desulfovibrio salexigens 880 1 2082 0 genus Pseudodesulfovibrio 2035811 8491 1 4 46 Pseudodesulfovibrio indicus species 0 4398 1 1716143 Pseudodesulfovibrio aespoeensis 0 species 2582 1 182210 1 1465 57320 Pseudodesulfovibrio profundus species 0 872 252 9 1 33451 genus 0 Desulfovibrio species 0 Candidatus Desulfovibrio trichonymphae 1725232 1243 1 44742 1 4236 0 species Desulfovibrio fairfieldensis 2593640 2858 1 0 no rank species 0 Desulfovibrio sp. G11 631220 2858 1 6022 1 876 Desulfovibrio desulfuricans species 0 1 6187 901 Desulfovibrio piger 0 species Desulfovibrio vulgaris species 0 6591 1 881 2062 1 58180 Desulfovibrio alaskensis species 0 184917 4000 1 species 0 Desulfovibrio magneticus Desulfuromonadales order 0 1 35268 24 422 69541 family 0 Geobacteraceae 213422 1 23463 14 282 0 genus Geobacter 28231 1 20280 11 288 1 1354 1203471 Geobacter daltonii 0 species species 0 Geobacter lovleyi 313985 1 2342 2627627 4946 2 no rank 0 443144 1 2096 0 species Geobacter sp. M21 Geobacter sp. M18 species 0 1 2850 443143 species 0 Geobacter metallireducens 28232 1511 1 1 2342 345632 Geobacter pickeringii species 0 1532 1 35554 Geobacter sulfurreducens 0 species 0 species Geobacter uraniireducens 351604 1 1488 225194 1 2376 species 0 Geobacter bemidjiensis 1 2101 1340425 Geobacter anodireducens 0 species genus 0 Geoalkalibacter 392332 2901 1 2 10 2891 1 483547 Geoalkalibacter subterraneus species 0 9 373 1 11383 213421 Desulfuromonadaceae family 0 18 5 62 6893 1 genus 0 Pelobacter Pelobacter acetylenicus species 0 1 1475 29542 1233 1 19 Pelobacter carbinolicus 0 species 0 no rank 2620299 1 1170 1842532 1 1170 species 0 Pelobacter sp. SFB93 species 0 Pelobacter propionicus 29543 2953 1 51 3 4117 1 890 Desulfuromonas genus 0 1 2105 1603606 Desulfuromonas soudanensis 0 species no rank 0 1961 1 2614637 1823759 1961 1 0 species Desulfuromonas sp. DDH964 29 63985 1 38 926 0 order Myxococcales 224462 3190 3 suborder 0 Kofleriaceae 0 family 3 9 1 3190 224464 162027 2 41 3181 1 0 genus Haliangium Haliangium ochraceum species 0 1 3140 80816 80811 49164 26 suborder 0 Archangiaceae 0 family 1 13758 9 384 39 0 genus Cystobacter 42 2 123 3155 1 0 species Cystobacter fuscus 43 3032 1 44 2 12 1 3079 genus 0 Melittangium 83453 1 3067 species 0 Melittangium boletus 1 3430 34 2 40 Stigmatella 0 genus 3396 1 41 Stigmatella aurantiaca 0 species Archangium 0 genus 2 107 3710 1 47 48 3603 1 species 0 Archangium gephyra 1524215 114 5 1 10409 0 family Anaeromyxobacteraceae 161492 1 10295 4 185 genus 0 Anaeromyxobacter species 0 Anaeromyxobacter dehalogenans 161493 4751 1 2620896 5359 2 0 no rank Anaeromyxobacter sp. K species 0 1 3159 447217 species 0 Anaeromyxobacter sp. Fw109-5 404589 2200 1 3 28 1353 1 1524213 Vulgatibacteraceae family 0 Vulgatibacter genus 0 1 1325 53 2 1524214 1272 1 1391653 Vulgatibacter incomptus 0 species Myxococcaceae 0 family 23644 1 250 9 31 1 15371 5 846 32 Myxococcus genus 0 Myxococcus fulvus 0 species 1 6526 33 2616 1 34 Myxococcus xanthus species 0 2702 1 1297742 Myxococcus hansupus 0 species 1 2681 83455 Myxococcus stipitatus 0 species Corallococcus genus 0 280 3 1 8023 83461 1 4144 184914 Corallococcus coralloides species 0 Myxococcus macrosporus 0 species 3599 1 35 80812 8 10705 0 suborder 49 8541 1 36 5 0 family Polyangiaceae 1890 1 7 2 50 Chondromyces genus 0 Chondromyces crocatus species 0 1883 1 52 Sorangium 0 genus 117 2 1 6615 39643 Sorangium cellulosum 0 species 1 6498 56 Sandaracinaceae family 0 3 67 2164 1 1055686 Sandaracinus genus 0 14 2 1 2097 1055688 927083 2083 1 0 species Sandaracinus amylolyticus 453227 1 3401 55 4 order 0 Desulfarculales family 0 Desulfarculaceae 453228 3346 1 58 3 453229 1 3288 2 25 genus 0 Desulfarculus Desulfarculus baarsii 0 species 3263 1 453230 213113 1344 1 5 6 0 order Desulfurellales Desulfurellaceae family 0 5 2 1339 1 117942 2 5 773 1 33001 Desulfurella genus 0 768 1 33002 Desulfurella acetivorans species 0 genus 0 Hippea 84404 2 2 1 564 Hippea maritima species 0 1 562 84405 0 order Syntrophobacterales 213462 9 14 4011 1 213465 26 2 1 1424 0 family Syntrophobacteraceae 0 genus 29526 1 1398 119484 1 1398 species 0 Syntrophobacter fumaroxidans 1 2573 10 6 213468 Syntrophaceae 0 family 590 1 2357 0 genus 590 1 2358 Desulfomonile tiedjei 0 species Desulfobacca 0 genus 1 833 2 2 60892 60893 831 1 0 species Desulfobacca acetoxidans 0 genus Syntrophus 43773 2 3 1140 1 1137 1 316277 Syntrophus aciditrophicus species 0 213118 20 127 15004 1 0 order Desulfobacterales Desulfobulbaceae 0 family 29 9 1 6789 213121 Desulfurivibrio 0 genus 55 2 1 2620 427922 427923 2565 1 0 species Desulfurivibrio alkaliphilus 0 genus Desulfocapsa 53318 8 2 921 1 Desulfocapsa sulfexigens 0 species 913 1 65555 893 1 2129 2 12 genus 0 Desulfobulbus 1986146 2117 1 species 0 Desulfobulbus sp. ORNL 109168 2 4 1 1090 0 genus Desulfotalea species 0 Desulfotalea psychrophila 84980 1 1086 213119 57 10 8088 1 family 0 Desulfobacteraceae 218207 2 4 1737 1 genus 0 Desulfatibacillum 259354 1733 1 species 0 Desulfatibacillum alkenivorans Desulfobacula genus 0 2 4 1100 1 28222 28223 1096 1 0 species Desulfobacula toluolica 3884 1 3 27 896 Desulfococcus genus 0 0 species Desulfococcus multivorans 897 1 1417 0 species Desulfococcus oleovorans 181663 1 2440 2295 1310 1 2 1 0 genus Desulfobacterium 1309 1 2296 Desulfobacterium autotrophicum 0 species 0 class Epsilonproteobacteria 29547 73 311 1 87013 66 3496 85498 1 213849 Campylobacterales order 0 15 14 6163 1 72293 Helicobacteraceae family 0 5 2 351 1 843 Wolinella genus 0 0 species Wolinella succinogenes 844 346 1 genus 0 Helicobacter 209 5798 1 12 258 76936 393 1 species 0 Helicobacter typhlonius 295 1 37372 Helicobacter bilis species 0 0 species Helicobacter hepaticus 32025 1 508 0 no rank 169 1 2593540 222136 169 1 species 0 Helicobacter sp. MIT 01-6242 138563 1 417 species 0 Helicobacter cetorum Helicobacter himalayensis 0 species 284 1 1591088 Helicobacter mustelae 0 species 214 1 217 1 350 214 Helicobacter felis 0 species Helicobacter pylori species 0 2285 1 210 Helicobacter acinonychis 0 species 1 179 212 Helicobacter cinaedi 0 species 446 1 213 family 0 2771471 1381 4 genus 0 Sulfurimonas 202746 5 3 1 1041 Sulfurimonas denitrificans species 0 425 1 39766 Sulfurimonas autotrophica species 0 611 1 202747 0 genus 286130 340 1 1 340 148813 Sulfuricurvum kujiense species 0 Campylobacteraceae family 0 41 5755 1 72199 72294 2321108 6737 5 no rank 0 28196 1 3017 3 60 0 genus Arcobacter 1788 1 28197 Arcobacter butzleri species 0 1169 1 28199 Arcobacter nitrofigilis 0 species 2321187 1984 1 genus 0 1850254 1984 1 0 species Arcobacter sp. LPB0137 0 no rank 1 1736 2321207 1 1736 944547 Arcobacter sp. L 0 species 0 genus Sulfurospirillum 57665 3875 1 55 9 1 345 194424 Sulfurospirillum halorespirans 0 species 2618290 3 1831 0 no rank Sulfurospirillum sp. SL2-1 species 0 1 459 1986224 220622 1 691 species 0 Sulfurospirillum sp. JPD-1 Sulfurospirillum sp. UCH001 0 species 1 681 1581011 65553 1 338 species 0 Sulfurospirillum deleyianum 568 1 366522 Sulfurospirillum cavolei species 0 species 0 Sulfurospirillum multivorans 66821 1 374 44674 1 364 species 0 Sulfurospirillum barnesii 0 genus Campylobacter 194 1259 26 55832 1 199 654 1 species 0 Campylobacter concisus 201 1550 1 species 0 Campylobacter lari 1 1057 206 Campylobacter sputorum species 0 2593542 2082 4 0 no rank species 0 Campylobacter sp. RM12175 1660076 1 464 1660074 562 1 0 species Campylobacter sp. RM8964 1 424 1660073 Campylobacter sp. RM6137 species 0 species 0 Campylobacter sp. RM16704 1500960 1 632 488546 1 764 species 0 Campylobacter peloridis 1 11816 197 Campylobacter jejuni 0 species 0 species Campylobacter volucris 1031542 531 1 1 480 374106 Campylobacter cuniculorum 0 species 0 species Campylobacter curvus 200 436 1 827 1 722 species 0 Campylobacter ureolyticus 645 1 497724 Campylobacter subantarcticus species 0 Campylobacter lanienae species 0 1 1276 75658 387 1 522485 Campylobacter avium species 0 198 1 537 0 species Campylobacter hyointestinalis 1 525 1244531 Campylobacter iguaniorum 0 species 0 species Campylobacter coli 195 25894 1 260714 747 1 0 species Campylobacter insulaenigrae 1 472 824 Campylobacter gracilis 0 species species 0 Campylobacter hominis 76517 645 1 196 1 1915 0 species Campylobacter fetus species 0 Campylobacter helveticus 28898 1 332 0 species Campylobacter pinnipediorum 1965231 1 1106 0 family 5 2259 2771472 269260 999 1 2 3 genus 0 Nitratifractor Nitratifractor salsuginis species 0 996 1 269261 Sulfurovum 0 genus 1 1260 3 11 265570 Sulfurovum lithotrophicum species 0 1 520 206403 2646778 1 729 no rank 0 387093 1 729 species 0 Sulfurovum sp. NBC37-1 Nautiliales 0 order 6 4 1204 1 235899 Nautiliaceae 0 family 817 1 3 6 224467 Nautilia 0 genus 1 811 35 2 191291 1 776 244787 Nautilia profundicola 0 species 2795691 383 2 0 family 0 genus Nitratiruptor 269258 1 2 1 383 2624044 1 382 no rank 0 0 species Nitratiruptor sp. SB155-2 387092 382 1 class 0 Oligoflexia 1553900 13 3 1 3990 1 2563 6 5 213481 Bdellovibrionales 0 order Bdellovibrionaceae 0 family 4 9 2557 1 213483 3 9 1 2548 958 Bdellovibrio genus 0 Bdellovibrio exovorus species 0 359 1 453816 1 2180 959 Bdellovibrio bacteriovorus 0 species 2024979 38 7 1 1424 0 order Bacteriovoracales 0 family Halobacteriovoraceae 1652132 3 1 706 1 1652133 705 1 2 1 genus 0 Halobacteriovorax 1 704 97084 Halobacteriovorax marinus species 0 family 0 Bacteriovoracaceae 263369 1 680 2 3 genus 0 Bacteriovorax 146784 1 678 2 1 677 1 960 Bacteriovorax stolpii 0 species 888 2464 1406741 1 1236 Gammaproteobacteria 0 class 33 18 1 77671 135625 Pasteurellales order 0 712 143 32 1 77653 0 family Pasteurellaceae 1 2439 3 7 416916 Aggregatibacter 0 genus 714 1 865 0 species Aggregatibacter actinomycetemcomitans 732 1567 1 species 0 Aggregatibacter aphrophilus genus 0 Basfia 697331 3 2 792 1 1 789 157673 [Mannheimia] succiniciproducens 0 species 214906 1 784 2 2 genus 0 Histophilus Histophilus somni 0 species 782 1 731 0 genus Haemophilus 724 1 62243 14 6 1 50099 729 Haemophilus parainfluenzae species 0 249188 1 4379 species 0 Haemophilus pittmaniae 2007 1 2609962 no rank 0 712310 2007 1 0 species Haemophilus sp. oral taxon 036 730 811 1 0 species [Haemophilus] ducreyi 1 4933 727 Haemophilus influenzae species 0 745 1 2634 2 3 0 genus Pasteurella 741 1 754 Pasteurella dagmatis species 0 1891 1 747 Pasteurella multocida 0 species 5 31 1 3196 713 Actinobacillus 0 genus Actinobacillus succinogenes 0 species 1 714 67854 Actinobacillus pleuropneumoniae species 0 802 1 715 species 0 Actinobacillus suis 716 802 1 Actinobacillus equuli species 0 847 1 718 2094023 1 1158 2 2 genus 0 Glaesserella 738 1156 1 species 0 Glaesserella parasuis genus 0 Mannheimia 75984 2623 1 4 33 0 species Mannheimia varigena 85404 1 1113 75985 772 1 0 species Mannheimia haemolytica 2645054 1 705 no rank 0 Mannheimia sp. USDA-ARS-USMARC-1261 species 0 705 1 1432056 Gallibacterium genus 0 2 4 1 616 155493 0 species Gallibacterium anatis 750 1 612 2 9 1025 1 476528 Bibersteinia genus 0 47735 1016 1 species 0 Bibersteinia trehalosi 0 order Immundisolibacterales 1934945 62 4 2169 1 Immundisolibacteraceae 0 family 1 2107 61 3 1934946 7 2 2046 1 1934947 Immundisolibacter genus 0 1810504 2039 1 species 0 Immundisolibacter cernigliae Vibrionales order 0 18 43 1 31955 135623 Vibrionaceae 0 family 1 31937 151 42 641 2042066 539 1 genus 0 0 species Paraphotobacterium marinum 1755811 539 1 12 4 1 2995 657 Photobacterium 0 genus 1295392 1060 1 0 species Photobacterium gaetbulicola Photobacterium damselae 0 species 1093 1 38293 species 0 Photobacterium profundum 74109 830 1 0 genus Vibrio 662 30 425 1 25734 Vibrio cholerae 0 species 1 1310 666 546 1 1534743 Vibrio hyugaensis 0 species Vibrio anguillarum species 0 948 1 55601 Vibrio gazogenes species 0 584 1 687 species group 0 10 9052 717610 0 species Vibrio campbellii 680 1 1188 species 0 Vibrio rotiferianus 190895 367 1 0 species Vibrio natriegens 691 997 1 Vibrio jasicida 0 species 552 1 766224 1821 1 663 Vibrio alginolyticus 0 species 0 species Vibrio owensii 696485 725 1 0 species subgroup 2315253 1167 2 413 1 150340 Vibrio antiquarius 0 species Vibrio diabolicus species 0 754 1 50719 Vibrio parahaemolyticus 0 species 1340 1 670 669 895 1 0 species Vibrio harveyi 1 2176 672 Vibrio vulnificus 0 species species group 0 361 1 1891919 1 361 29498 Vibrio tubiashii 0 species species 0 Vibrio furnissii 29494 1 740 Vibrio scophthalmi 0 species 641 1 45658 212663 1 412 species 0 Vibrio tasmaniensis 2 1209 2614977 no rank 0 593 1 1116375 Vibrio sp. EJY3 species 0 2014742 616 1 species 0 Vibrio sp. 2521-89 52443 1 519 0 species Vibrio tapetis 2025808 1 352 species 0 Vibrio qinghaiensis 1 996 28173 Vibrio nigripulchritudo 0 species 0 species Vibrio fluvialis 676 1146 1 1643 1 190893 Vibrio coralliilyticus species 0 553239 522 1 species 0 Vibrio breoganii 1 901 1435069 Vibrio tritonius species 0 Vibrio mimicus 0 species 1251 1 674 genus 0 Aliivibrio 511678 1920 1 15 4 species 0 Aliivibrio fischeri 668 829 1 1 538 40269 Aliivibrio salmonicida 0 species 80852 1 538 species 0 Aliivibrio wodanis 598 1 2 5 246861 Grimontia genus 0 0 species Grimontia hollisae 673 1 593 27 4 938 1 1775403 Nevskiales order 0 2 895 2689614 family 0 8 2 1 895 469322 Steroidobacter 0 genus Steroidobacter denitrificans species 0 887 1 465721 0 family Sinobacteraceae 568386 16 1 Alteromonadales order 0 104 146 1 54561 135622 Alteromonadaceae family 0 21100 1 30 81 72275 1751872 1677 1 2 13 genus 0 Lacimicrobium 1664 1 1526571 Lacimicrobium alkaliphilum 0 species 774 1 2 3 89404 Glaciecola 0 genus no rank 0 347 1 2618684 983545 347 1 species 0 Glaciecola sp. 4H-3-7+YE-5 425 1 300231 Glaciecola nitratireducens species 0 1621534 2 1 1 632 genus 0 Paraglaciecola 0 species Paraglaciecola psychrophila 326544 631 1 0 genus Agarivorans 261825 2 1 1568 1 680279 1567 1 0 species Agarivorans gilvus genus 0 Marinobacter 2742 11024 1 185 10 species 0 Marinobacter adhaerens 1033846 1 1131 0 no rank 83889 3 3689 677 1 490759 Marinobacter sp. BSs20148 0 species 1 1240 1671721 Marinobacter sp. CP1 species 0 1749259 1 1772 0 species Marinobacter sp. LQ44 species 0 Marinobacter similis 1420916 1029 1 Marinobacter hydrocarbonoclasticus species 0 1 1847 2743 species 0 Marinobacter psychrophilus 330734 709 1 1 1597 1420917 Marinobacter salarius species 0 837 1 1874317 Marinobacter salinus 0 species 1 5344 10 47 226 Alteromonas 0 genus 1459 1 28108 Alteromonas macleodii 0 species 233316 1 627 0 species Alteromonas stellipolaris 1 412 589873 Alteromonas australica species 0 Alteromonas mediterranea species 0 1047 1 314275 Alteromonas addita species 0 460 1 287094 3 1006 2614992 no rank 0 400 1 1777491 Alteromonas sp. Mac1 0 species Alteromonas sp. RW2A1 species 0 1 286 1917158 species 0 Alteromonas sp. MB-3u-76 2058133 1 320 Alteromonas naphthalenivorans species 0 286 1 715451 family 0 Colwelliaceae 267889 1 5064 15 8 Colwellia 0 genus 1 4609 14 6 28228 Colwellia psychrerythraea 0 species 1 676 28229 no rank 0 3 2977 196834 Colwellia sp. PAMC 20917 0 species 627 1 1816218 1816219 1 997 0 species Colwellia sp. PAMC 21821 58049 1353 1 0 species Colwellia sp. MT41 942 1 1967665 Colwellia beringensis species 0 1 440 1518149 0 genus 440 1 1763536 Thalassotalea crassostreae 0 species 267891 9 3 1 761 family 0 Moritellaceae 58050 2 6 752 1 genus 0 Moritella 80854 1 746 0 species Moritella viscosa 0 family Psychromonadaceae 267894 5 3 1314 1 67572 1309 2 0 genus no rank 0 1 602 2614957 0 species Psychromonas sp. CNPT3 314282 602 1 Psychromonas ingrahamii species 0 707 1 357794 family 0 Ferrimonadaceae 267892 1475 1 17 3 2 28 1458 1 44011 Ferrimonas genus 0 0 species Ferrimonas balearica 44012 1430 1 267890 1 13003 25 49 family 0 Shewanellaceae 22 200 24 12954 1 0 genus Shewanella 470 1 60217 Shewanella violacea species 0 1 487 60961 Shewanella woodyi species 0 1 436 2018305 Shewanella bicestrii 0 species species 0 Shewanella loihica 359303 1133 1 species 0 Shewanella halifaxensis 271098 1 491 0 species Shewanella oneidensis 70863 401 1 0 species Shewanella putrefaciens 24 1 511 Shewanella frigidimarina species 0 1 577 56812 Shewanella pealeana species 0 361 1 70864 Shewanella japonica 0 species 1 462 93973 260364 1 457 0 species Shewanella marisflavi 2502 6 196818 no rank 0 351745 1 437 0 species Shewanella sp. W3-18-1 Shewanella sp. WE21 0 species 271 1 2029986 Shewanella sp. MR-7 0 species 1 370 60481 504 1 2059264 Shewanella sp. Pdp11 0 species 361 1 60480 Shewanella sp. MR-4 species 0 94122 559 1 0 species Shewanella sp. ANA-3 species 0 Shewanella baltica 62322 1195 1 60478 922 1 species 0 Shewanella amazonensis 1 922 225848 Shewanella psychrophila 0 species 404011 586 1 0 species Shewanella piezotolerans Shewanella sediminis species 0 522 1 271097 species 0 Shewanella denitrificans 192073 1 319 Idiomarinaceae family 0 1 1554 6 4 267893 1 1550 11 5 135575 Idiomarina genus 0 2 884 2614829 0 no rank Idiomarina sp. X4 species 0 1 434 2055892 Idiomarina sp. OT37-5b species 0 450 1 2100422 Idiomarina piscisalsi species 0 1 203 1096243 Idiomarina loihiensis species 0 1 452 135577 0 family Pseudoalteromonadaceae 267888 10144 1 28 25 Pseudoalteromonas 0 genus 1 10116 265 24 53246 1 536 288 Pseudoalteromonas atlantica species 0 0 species Pseudoalteromonas marina 267375 1 328 43657 1 524 0 species Pseudoalteromonas luteoviolacea Pseudoalteromonas aliena species 0 493 1 247523 176102 1 234 0 species Pseudoalteromonas agarivorans Pseudoalteromonas rubra species 0 536 1 43658 Pseudoalteromonas espejiana species 0 409 1 28107 228 1 315 0 species Pseudoalteromonas haloplanktis species 0 Pseudoalteromonas phenolica 161398 453 1 280 1 166935 Pseudoalteromonas translucida species 0 565 1 314281 Pseudoalteromonas tunicata 0 species Pseudoalteromonas issachenkonii 0 species 381 1 152297 5 2056 194690 no rank 0 Pseudoalteromonas sp. Bsw20308 species 0 1 366 283699 1 392 234831 Pseudoalteromonas sp. SM9913 species 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 0 1 373 1720343 1761891 443 1 species 0 Pseudoalteromonas sp. 13-15 Pseudoalteromonas sp. NC201 0 species 1 482 1514074 345 1 43659 Pseudoalteromonas tetraodonis 0 species 0 species Pseudoalteromonas nigrifaciens 28109 331 1 Pseudoalteromonas spongiae species 0 810 1 298657 1348114 1 468 species 0 Pseudoalteromonas piratica 394751 355 1 species 0 Pseudoalteromonas arctica 0 species Pseudoalteromonas piscicida 43662 1 432 Cellvibrionales 0 order 65 28 14135 1 1706369 Halieaceae 0 family 31 4 2235 1 1706372 Halioglobus genus 0 1 2204 5 3 1217416 930805 1 1074 0 species Halioglobus japonicus Halioglobus pacificus 0 species 1 1125 930806 1706371 78 11 1 6606 0 family Cellvibrionaceae genus 0 Cellvibrio 10 34 4 1 2993 2624793 2 2087 0 no rank Cellvibrio sp. PSBB023 species 0 729 1 1945512 1987723 1 1358 0 species Cellvibrio sp. PSBB006 Cellvibrio japonicus species 0 1 872 155077 genus 0 316625 1 563 0 species Saccharophagus degradans 86304 563 1 genus 0 764 1 2425 Teredinibacter turnerae 0 species 764 1 2426 670 1 2 1 2036021 Agarilytica 0 genus Agarilytica rhodophyticola 0 species 1 669 1737490 447467 2 4 1 1538 genus 0 Simiduia Simiduia agarivorans species 0 1534 1 447471 1706375 1 1399 93 7 0 family Spongiibacteraceae Zhongshania genus 0 578 1 2 19 1434050 species 0 Zhongshania aliphaticivorans 1470434 1 559 2 19 1 425 1084558 Oceanicoccus genus 0 1 406 716816 Oceanicoccus sagamiensis 0 species genus 0 Spongiibacter 630749 20 2 1 303 0 no rank 1 283 2631504 283 1 1620392 Spongiibacter sp. IMCC21906 species 0 3830 1 77 5 1706373 Microbulbiferaceae family 0 genus 0 Microbulbifer 48073 23 4 1 3753 1205 1 260552 Microbulbifer agarilyticus species 0 species 0 Microbulbifer aggregans 1769779 1504 1 252514 1021 1 0 species Microbulbifer thermotolerans 0 order Acidiferrobacterales 1692040 6 47 1 2335 Acidiferrobacteraceae 0 family 81 5 2288 1 1692041 1 925 2 5 1692042 Sulfurifustis genus 0 Sulfurifustis variabilis 0 species 1 920 1675686 1282 1 2 11 1744881 Sulfuricaulis genus 0 1 1271 1620215 Sulfuricaulis limicola 0 species 135619 47693 1 471 70 0 order Oceanospirillales 191033 1 3 1 711 family 0 Oleiphilaceae genus 0 Oleiphilus 141450 1 710 2 2 1 708 141451 Oleiphilus messinensis 0 species 106 12 5693 1 135620 Oceanospirillaceae 0 family 188907 1 472 genus 0 0 species Oleispira antarctica 188908 1 472 genus 0 Thalassolituus 187492 570 1 5 2 187493 1 565 0 species Thalassolituus oleivorans 1722 1 2 50 48075 Marinobacterium 0 genus 1821621 1 1672 0 species Marinobacterium aestuarii Bacterioplanes genus 0 22 2 1 1111 1537406 1089 1 1249553 Bacterioplanes sanyensis 0 species 28253 4 14 1 1712 0 genus Marinomonas no rank 0 196814 1 738 738 1 400668 Marinomonas sp. MWYL1 0 species 1 523 119864 Marinomonas mediterranea species 0 species 0 Marinomonas posidonica 936476 1 437 0 family Alcanivoracaceae 224372 1 9289 80 9 Ketobacter genus 0 1115 1 1 2 2025617 Ketobacter alkanivorans 0 species 1114 1 1917421 Alcanivorax genus 0 1 8094 6 147 59753 0 species Alcanivorax borkumensis 59754 896 1 Alcanivorax dieselolei 0 species 2089 1 285091 2638842 1 902 no rank 0 1 902 1113728 Alcanivorax sp. NBRC 101098 species 0 1094342 1698 1 species 0 Alcanivorax xenomutans Alcanivorax pacificus 0 species 1 2362 1306787 255527 5 4 1 1969 0 family Saccharospirillaceae Reinekea genus 0 5 2 1 823 230494 1 818 1336806 Reinekea forsetii species 0 1142 1 34 2 1445504 Gynuella 0 genus Gynuella sunshinyii 0 species 1108 1 1445505 28256 486 31 26779 1 family 0 Halomonadaceae Halomonas 0 genus 218 15 1 16913 2745 115561 1651 1 0 species Halomonas hydrothermalis 390 1 213554 Halomonas campaniensis species 0 1178482 1 906 species 0 Halomonas huangheensis 0 species Halomonas chromatireducens 507626 1403 1 2609666 8351 8 0 no rank Halomonas sp. R57-5 0 species 1 1330 1610576 species 0 Halomonas sp. GFAJ-1 1118153 467 1 818 1 1962264 Halomonas sp. 'Soap Lake #7' species 0 species 0 Halomonas sp. 1513 1883416 2098 1 Halomonas sp. GT species 0 1 364 1971364 Halomonas sp. KO116 0 species 1 773 1504981 Halomonas sp. 'Soap Lake #6' 0 species 1 818 1949203 Halomonas sp. SF2003 species 0 1683 1 2136172 0 species Halomonas aestuarii 1897729 2163 1 1 1831 475662 Halomonas beimenensis species 0 Kushneria genus 0 3 21 2478 1 504090 species 0 Kushneria marisflavi 157779 1 1200 1 1257 698828 Kushneria konosiri 0 species 42054 52 2 1 1098 genus 0 Chromohalobacter 1 1046 158080 Chromohalobacter salexigens species 0 1 1420 42 2 404432 Salinicola 0 genus 1771309 1 1378 0 species Salinicola tamaricis 0 genus Halotalea 376488 1 1456 45 2 1 1411 376489 Halotalea alkalilenta species 0 0 genus Cobetia 204286 6 2 1 2477 0 species Cobetia marina 28258 2471 1 0 no rank 114403 451 4 genus 0 Candidatus Portiera 235572 2 2 1 170 species 0 Candidatus Portiera aleyrodidarum 91844 1 168 1 14 114185 0 genus 114186 14 1 0 species Candidatus Carsonella ruddii 0 genus 267 1 1495768 0 species Candidatus Evansia muelleri 1495769 1 267 1615 1 22 6 1920240 Kangiellaceae family 0 Kangiella 0 genus 1 1593 5 29 261963 1144748 429 1 0 species Kangiella sediminilitoris Kangiella geojedonensis 0 species 1 398 914150 423 1 1561924 Kangiella profundi 0 species 261964 314 1 0 species Kangiella koreensis 224379 3 2 1166 1 0 family Hahellaceae 1 1164 7 2 158481 Hahella 0 genus 0 species Hahella chejuensis 158327 1 1157 order 0 Orbales 1240482 1 6 1 1410 Orbaceae 0 family 1 5 1409 1 1240483 genus 0 Gilliamella 1193503 1 2 770 1 Gilliamella apicola 0 species 1 769 1196095 2 1 638 1 1335631 Frischella genus 0 Frischella perrara 0 species 637 1 1267021 91347 246 2222 713215 1 0 order Enterobacterales Pectobacteriaceae 0 family 64 20 1 25782 1903410 Dickeya 0 genus 6 440 1 11317 204037 Dickeya fangzhongdai 0 species 1714 1 1778540 1882 1 204042 Dickeya zeae species 0 Dickeya dianthicola 0 species 1820 1 204039 1 2175 204038 Dickeya dadantii 0 species 1089444 3286 1 species 0 Dickeya solani 325 6 9532 1 122277 Pectobacterium genus 0 species 0 Pectobacterium carotovorum 554 4459 1 975 1 1905730 Pectobacterium parmentieri 0 species 0 species Pectobacterium wasabiae 55208 1131 1 Pectobacterium polaris species 0 1 1357 2042057 0 species Pectobacterium atrosepticum 29471 1285 1 1418 1 10 2 71655 Brenneria 0 genus Brenneria goodwinii species 0 1 1408 1109412 5 87 3451 1 84565 Sodalis genus 0 1 1396 1239307 Sodalis praecaptivus species 0 0 species Sodalis glossinidius 63612 1 942 1486991 931 1 0 species Candidatus Sodalis pierantonius 95 1 1929246 Sodalis endosymbiont of Henestaris halophilus species 0 0 no rank 451511 2 1447 702 17 2 1447 1 genus 0 Plesiomonas 1 1430 703 Plesiomonas shigelloides 0 species Yersiniaceae 0 family 61637 1 241 38 1903411 125 4 1 3891 34037 Rahnella 0 genus 34038 1 1186 0 species Rahnella aquatilis no rank 0 2 2580 2635087 1223 1 741091 Rahnella sp. Y9602 species 0 Rouxiella sp. ERMR1:05 species 0 1 1357 1805933 629 13 397 1 10175 0 genus Yersinia no rank 0 1 462 2653513 Yersinia sp. FDAARGOS_228 species 0 462 1 1839800 29486 1 778 species 0 Yersinia ruckeri Yersinia intermedia species 0 1 510 631 29485 1 429 species 0 Yersinia rohdei 630 2088 1 species 0 Yersinia enterocolitica 1649845 2124 3 0 species group 632 743 1 species 0 Yersinia pestis 633 1 952 0 species Yersinia pseudotuberculosis Yersinia similis species 0 429 1 367190 Yersinia frederiksenii 0 species 1 1768 29484 Yersinia aldovae 0 species 437 1 29483 species 0 Yersinia aleksiciae 263819 671 1 511 1 28152 Yersinia kristensenii species 0 Serratia 0 genus 16 1963 1 44429 613 0 species Serratia rubidaea 61652 2550 1 0 species Serratia marcescens 615 10558 1 1 1106 28151 Serratia proteamaculans species 0 2647522 13698 8 no rank 0 species 0 Serratia sp. SCBI 488142 2171 1 1758196 2400 1 species 0 Serratia sp. SSNIH1 Serratia sp. FS14 species 0 1915 1 1327989 2033438 1 2093 0 species Serratia sp. MYb239 768493 1 1183 species 0 Serratia sp. AS13 2073 1 671990 Serratia sp. FGI94 0 species Serratia sp. AS12 0 species 1 1183 768490 0 species Serratia sp. ATCC 39006 104623 1 680 61651 1 2760 species 0 Serratia ficaria Serratia plymuthica species 0 6915 1 82996 614 1275 1 species 0 Serratia liquefaciens 47917 1 3604 0 species Serratia fonticola Rouxiella genus 0 1 17 1565532 929812 1 2073 genus 0 1 2073 929813 Gibbsiella quercinecans species 0 Chania genus 0 811 1 2 27 1745211 1 784 1639108 Chania multitudinisentens species 0 1 14269 14 88 1903412 Hafniaceae family 0 genus 0 Hafnia 568 38 3 2124 1 1514 1 569 Hafnia alvei species 0 1 572 2621980 no rank 0 1848580 572 1 0 species Hafnia sp. CBA7124 Obesumbacterium genus 0 2 110 1 563 82982 species 0 Obesumbacterium proteus 82983 453 1 genus 0 Edwardsiella 635 8 727 11494 1 Edwardsiella piscicida species 0 1515 1 1263550 93378 1 1072 0 species Edwardsiella hoshinae Edwardsiella ictaluri 0 species 1 1137 67780 1 2842 636 Edwardsiella tarda 0 species 1280 1 1821960 Edwardsiella anguillarum species 0 2676541 2 2921 0 no rank 1578828 1638 1 species 0 Edwardsiella sp. EA181011 species 0 Edwardsiella sp. LADL05-105 1650654 1283 1 157 22 11640 1 1903414 Morganellaceae 0 family genus 0 Xenorhabdus 626 1 2839 6 41 1 463 628 Xenorhabdus nematophila 0 species 434 1 351679 Xenorhabdus hominickii 0 species 1 513 351671 Xenorhabdus doucetiae 0 species 1 475 40577 Xenorhabdus poinarii 0 species Xenorhabdus bovienii 0 species 1 913 40576 Proteus genus 0 3 95 1939 1 583 0 species Proteus vulgaris 585 1 632 Proteus mirabilis 0 species 1212 1 584 0 genus Photorhabdus 29487 4 88 1871 1 Photorhabdus temperata species 0 1 659 574560 0 species Photorhabdus asymbiotica 291112 1 503 Photorhabdus luminescens species 0 1 621 29488 genus 0 Arsenophonus 637 1 459 1 2 Arsenophonus symbiont of Lipoptena fortisetosa species 0 1 458 634113 genus 0 Morganella 581 2584 1 245 2 Morganella morganii 0 species 2339 1 582 Providencia 0 genus 1 1791 11 4 586 Providencia rettgeri 0 species 480 1 587 1 940 588 Providencia stuartii 0 species 126385 360 1 0 species Providencia alcalifaciens 543 119 2416 1 564136 family 0 Enterobacteriaceae genus 0 Citrobacter 544 14 2284 29249 1 7 16284 1344959 species group 0 0 species Citrobacter braakii 57706 1 1965 0 species Citrobacter freundii complex sp. CFNIH3 2077147 1 1185 67827 3742 1 0 species Citrobacter werkmanii 2066049 1 1123 species 0 Citrobacter freundii complex sp. CFNIH2 1 1205 2077148 Citrobacter freundii complex sp. CFNIH4 species 0 species 0 Citrobacter freundii complex sp. CFNIH9 2077149 1 1228 546 1 5836 0 species Citrobacter freundii species 0 Citrobacter koseri 545 1 1877 Citrobacter amalonaticus species 0 3578 1 35703 1539 1 67824 Citrobacter farmeri 0 species species 0 Citrobacter rodentium 67825 1560 1 no rank 0 2644389 2127 2 1920110 1 1322 0 species Citrobacter sp. CFNIH10 Citrobacter sp. FDAARGOS_156 species 0 1 805 1702170 genus 0 Candidatus Ishikawaella 409304 1 237 2 6 Candidatus Ishikawaella capsulata species 0 1 231 168169 Enterobacter 0 genus 22 3935 230111 1 547 species group 0 354276 209346 12 1 1470 69218 Enterobacter cancerogenus species 0 158836 3 18438 1 101391 0 species Enterobacter hormaechei Enterobacter xiangfangensis subspecies 0 1 7618 1296536 1812934 1 75335 0 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 0 species Enterobacter kobei 208224 1 958 299767 1 1434 species 0 Enterobacter ludwigii 1 1190 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 species Enterobacter cloacae 0 species 1 95705 550 Enterobacter asburiae 0 species 3806 1 61645 3392 3 2757714 0 no rank 2027919 1342 1 species 0 Enterobacter cloacae complex bacterium 2077137 863 1 0 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1187 1 1915310 Enterobacter cloacae complex sp. ECNIH7 0 species 2608935 9 16830 no rank 0 Enterobacter sp. Crenshaw species 0 737 1 1977566 Enterobacter sp. FY-07 0 species 1020 1 1692238 2051905 1 8144 species 0 Enterobacter sp. CRENT-193 Enterobacter sp. R4-368 species 0 1634 1 1166130 species 0 Enterobacter sp. HK169 1868135 1 977 Enterobacter sp. SA187 0 species 1 1803 1914861 1029 1 1827481 Enterobacter sp. ODB01 species 0 species 0 Enterobacter sp. 638 399742 1 916 1560339 570 1 0 species Enterobacter sp. E20 Leclercia 0 genus 4 190 5872 1 83654 4069 2 2627398 0 no rank Leclercia sp. LSNIH1 0 species 2490 1 1920114 Leclercia sp. LSNIH3 species 0 1579 1 1920116 83655 1 1613 0 species Leclercia adecarboxylata 36866 6947 5 0 no rank 891974 1633 1 0 species Plautia stali symbiont Enterobacteriaceae bacterium ENNIH1 species 0 1233 1 2066051 0 species Enterobacteriaceae bacterium ENNIH3 1920128 1377 1 species 0 Enterobacteriaceae bacterium strain FGI 57 693444 1332 1 1920109 1 1372 species 0 Enterobacteriaceae bacterium ENNIH2 genus 0 Cronobacter 413496 253 8 12542 1 Cronobacter universalis 0 species 1 1202 535744 28141 1 2859 0 species Cronobacter sakazakii species 0 Cronobacter dublinensis 413497 1559 1 1 1205 413503 Cronobacter malonaticus species 0 Cronobacter turicensis 0 species 1561 1 413502 0 species Cronobacter condimenti 1163710 1 1729 Cronobacter muytjensii 0 species 2174 1 413501 579 1 1267 genus 0 Kluyvera intermedia 0 species 1 1267 61648 1335483 7 2 1618 1 0 genus Shimwellia 563 1611 1 0 species Shimwellia blattae 620 4 802 1 7617 0 genus Shigella 623 1919 1 species 0 Shigella flexneri Shigella dysenteriae 0 species 1 2381 622 2629414 2515 1 0 no rank species 0 Shigella sp. PAMC 28760 1813821 1 2515 Kosakonia genus 0 6913 1 124 5 1330547 Kosakonia cowanii 0 species 1 1978 208223 0 species Kosakonia radicincitans 283686 1 2140 497725 1499 1 species 0 Kosakonia oryzae 1158459 1172 1 0 species Kosakonia sacchari 1330546 21 3 1 6393 genus 0 Pluralibacter 4116 1 61647 Pluralibacter gergoviae species 0 0 species [Enterobacter] lignolyticus 1334193 1 2256 0 genus Raoultella 160674 1 7078 3 86 5024 1 54291 Raoultella ornithinolytica species 0 Raoultella planticola 0 species 1 1968 575 561 5 1467 25832 1 0 genus Escherichia 564 1824 1 0 species Escherichia fergusonii Escherichia marmotae species 0 1233 1 1499973 species 0 Escherichia albertii 208962 1 2902 562 18406 1 species 0 Escherichia coli no rank 0 191675 3449 18 clade 0 3449 18 84563 0 clade 1251 7 84564 Candidatus Blochmannia genus 0 7 23 1251 1 203804 203907 1 363 0 species Candidatus Blochmannia floridanus 0 species Candidatus Blochmannia vafer 251535 231 1 no rank 0 711328 2 319 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 species 126 1 1505596 1505597 1 193 0 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 101534 161 1 0 species Candidatus Blochmannia pennsylvanicus 0 species Candidatus Blochmannia chromaiodes 251542 1 154 146507 697 3 clade 0 255 1 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0 species 134287 231 1 species 0 secondary endosymbiont of Heteropsylla cubana genus 0 211 1 568987 138072 1 211 0 species Candidatus Hamiltonella defensa 1906659 2 1 91 1 0 genus Candidatus Hoaglandella 90 1 1778263 Candidatus Hoaglandella endobia 0 species 0 genus Candidatus Doolittlea 1906657 1 2 118 1 117 1 1778262 Candidatus Doolittlea endobia 0 species clade 0 199891 248 1 1835721 1 248 species 0 secondary endosymbiont of Trabutina mannipara 1 384 1906660 genus 0 Candidatus Mikella endobia 0 species 384 1 1778264 1 253 1906661 genus 0 1 253 1070130 Candidatus Gullanella endobia 0 species 1682492 1 407 genus 0 1410383 1 407 0 species Candidatus Tachikawaea gelatinosa 590 47 3 12376 1 genus 0 Salmonella Salmonella enterica species 0 1 11241 28901 54736 1 1088 0 species Salmonella bongori 0 genus 1048757 1 100 Candidatus Moranella endobia 0 species 100 1 1048758 Cedecea genus 0 4735 1 2 14 158483 158822 4721 1 species 0 Cedecea neteri Lelliottia genus 0 1 5387 62 4 1330545 61646 1 2092 species 0 Lelliottia amnigena 0 species Lelliottia jeotgali 1907578 1218 1 69220 1 2015 0 species Lelliottia nimipressuralis Klebsiella 0 genus 193577 1 10 2251 570 571 1 17171 0 species Klebsiella oxytoca 573 1 76125 species 0 Klebsiella pneumoniae no rank 0 2608929 2 4901 2973 1 1934254 Klebsiella sp. M5al 0 species Klebsiella sp. LTGPAF-6F species 0 1928 1 1905288 Klebsiella quasipneumoniae 0 species 1 5808 1463165 Klebsiella michiganensis species 0 1 5397 1134687 0 species Klebsiella aerogenes 548 3997 1 Klebsiella variicola 0 species 1 71594 244366 6333 1 2026240 Klebsiella quasivariicola 0 species 0 genus Candidatus Riesia 401618 2 1 420 1 Candidatus Riesia pediculicola species 0 419 1 401619 1903409 147 28 1 31328 family 0 Erwiniaceae genus 0 Buchnera 32199 2 18 1 2908 9 2890 1 species 0 Buchnera aphidicola 1 16660 814 11 53335 Pantoea genus 0 1 1503 1891675 Pantoea alhagi species 0 0 species Candidatus Pantoea carbekii 1235990 241 1 2626 1 553 Pantoea ananatis 0 species species group 0 1654067 1929 1 1929 1 549 Pantoea agglomerans 0 species 470934 2443 1 species 0 Pantoea vagans 2630326 4835 3 0 no rank 1484158 1 1559 species 0 Pantoea sp. PSNIH1 0 species Pantoea sp. PSNIH2 1484157 1 1889 592316 1387 1 0 species Pantoea sp. At-9b 1207 1 1076550 Pantoea rwandensis 0 species 1062 1 66269 Pantoea stewartii 0 species genus 0 2 3750 2100764 species 0 Pantoea gaviniae 665914 1 1744 0 species Pantoea calida 665913 1 2006 Erwinia 0 genus 8 265 1 6548 551 552 902 1 species 0 Erwinia amylovora Erwinia gerundensis species 0 1 1092 1619313 79967 687 1 species 0 Erwinia pyrifoliae 182337 1 1588 species 0 Erwinia billingiae 338565 1 1005 species 0 Erwinia tasmaniensis 0 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 1 173 0 no rank 2622719 836 1 215689 836 1 species 0 Erwinia sp. Ejp617 Wigglesworthia genus 0 2 1 1 491 51228 1 490 51229 Wigglesworthia glossinidia 0 species 1 824 2 21 82986 Tatumella 0 genus species 0 Tatumella citrea 53336 803 1 1903416 2 754 0 family 754 1 2 10 82984 Pragia 0 genus 82985 1 744 species 0 Pragia fontium 5473 12 118884 no rank 0 Sedimenticola genus 0 2 4 1 1208 349742 1 1204 1543721 Sedimenticola thiotaurini 0 species 3 1076 32036 clade 0 560 1 410330 Calyptogena okutanii thioautotrophic gill symbiont 0 species 113267 1 253 species 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 0 genus 263 1 1541743 0 species Candidatus Ruthia magnifica 386487 263 1 2 8 1 1358 1608298 Thiolapillus 0 genus 1076588 1 1350 species 0 Thiolapillus brandeum 1 3 560 1 655184 Candidatus Thioglobus 0 genus Candidatus Thioglobus singularis 0 species 1 294 1427364 1 265 1705394 Candidatus Thioglobus autotrophicus species 0 genus 0 1524249 866 1 0 species Pseudohongiella spirulinae 1249552 866 1 405 1 198346 clade 0 1 405 186490 Candidatus Baumannia cicadellinicola 0 species order 0 Thiotrichales 72273 33 16 14211 1 family 0 629 4 135617 Thioploca genus 0 1 293 3 2 40751 0 species Thioploca ingrica 40754 290 1 2 2 1 336 1021 Beggiatoa genus 0 species 0 Beggiatoa leptomitoformis 288004 334 1 family 0 Piscirickettsiaceae 135616 13 13 3871 1 genus 0 1 282 28884 Hydrogenovibrio crunogenus 0 species 282 1 39765 0 genus Methylophaga 40222 1 1078 3 9 Methylophaga nitratireducenticrescens species 0 1 594 754476 754477 475 1 0 species Methylophaga frappieri 34067 3 4 1188 1 genus 0 Cycloclasticus species 0 Cycloclasticus zancles 1329899 1 344 841 2 2621467 no rank 0 385025 398 1 0 species Cycloclasticus sp. P1 728003 443 1 species 0 Cycloclasticus sp. PY97N Thiomicrospira genus 0 613 1 1 3 933 species 0 Thiomicrospira cyclica 147268 1 325 92245 287 1 0 species Thiomicrospira aerophila 0 genus 1237 697 1 0 species Piscirickettsia salmonis 1238 1 697 Francisellaceae 0 family 7 15 1 9695 34064 262 9214 1 12 80 genus 0 Francisella 1044 2 2610885 no rank 0 species 0 Francisella sp. FSC1006 1547445 576 1 475375 468 1 0 species Francisella sp. MA067296 species 0 Francisella hispaniensis 622488 1 506 species 0 Francisella sp. CA97-1460 1542390 791 1 0 species Francisella persica 954 1 559 573569 1 487 species 0 Francisella sp. TX077308 Francisella tularensis 0 species 2147 1 263 28110 1 1573 0 species Francisella philomiragia 0 species Francisella noatunensis 657445 934 1 species 0 Francisella sp. TX077310 573570 1 608 species 0 Francisella halioticida 549298 1 485 474 1 2 2 1869285 Allofrancisella 0 genus 594679 1 472 0 species Allofrancisella guangzhouensis Pseudomonadales 0 order 243714 1 1409 129 72274 100 42 1 25004 468 Moraxellaceae family 0 25 467 1 18750 469 Acinetobacter 0 genus 480 1 40216 Acinetobacter radioresistens species 0 species 0 Acinetobacter oleivorans 1148157 1 546 no rank 0 3334 7 196816 Acinetobacter sp. LoGeW2-3 0 species 567 1 1808001 1646498 1 427 0 species Acinetobacter sp. TTH0-4 1758189 1 379 0 species Acinetobacter sp. ACNIH2 Acinetobacter sp. TGL-Y2 species 0 440 1 1407071 0 species Acinetobacter sp. ACNIH1 1636603 1 574 species 0 Acinetobacter sp. SWBY1 2079596 357 1 1608473 1 590 species 0 Acinetobacter sp. NCu2D-2 Acinetobacter junii species 0 934 1 40215 1 710 1324350 Acinetobacter equi species 0 0 species Acinetobacter haemolyticus 29430 636 1 202950 628 1 0 species 0 strain Acinetobacter sp. ADP1 62977 628 1 species group 0 909768 6551 5 1785128 419 1 0 species Acinetobacter lactucae Acinetobacter baumannii species 0 1 2332 470 Acinetobacter calcoaceticus 0 species 1 834 471 species 0 Acinetobacter pittii 48296 1 2238 Acinetobacter nosocomialis species 0 728 1 106654 species 0 Acinetobacter indicus 756892 1 669 Acinetobacter soli 0 species 413 1 487316 1288 1 108981 Acinetobacter schindleri species 0 409 1 40214 Acinetobacter johnsonii species 0 1789224 1 481 species 0 Acinetobacter larvae 0 species Acinetobacter bereziniae 106648 1 1204 Psychrobacter genus 0 3052 1 11 50 497 Psychrobacter cryohalolentis species 0 229 1 330922 0 no rank 6 1779 196806 275 1 1028416 Psychrobacter sp. DAB_AL43B 0 species 1 293 1720344 Psychrobacter sp. AntiMn-1 0 species 349106 300 1 0 species Psychrobacter sp. PRwf-1 Psychrobacter sp. P11G5 species 0 465 1 1699624 species 0 Psychrobacter sp. G 571800 178 1 268 1 1699622 Psychrobacter sp. P2G3 species 0 348 1 261164 Psychrobacter alimentarius 0 species 0 species Psychrobacter arcticus 334543 276 1 45610 370 1 species 0 Psychrobacter urativorans Moraxella 0 genus 5 24 1 3102 475 Moraxella osloensis 0 species 1 1469 34062 0 species Moraxella bovoculi 386891 1 846 29433 360 1 0 species Moraxella ovis species 0 Moraxella catarrhalis 480 403 1 1537 86 217301 1 135621 Pseudomonadaceae family 0 Pseudomonas genus 0 1 208842 80 7537 286 Pseudomonas brassicacearum 0 species 2954 1 930166 Pseudomonas psychrotolerans 0 species 1 1966 237610 1479 1 1583341 Pseudomonas cerasi 0 species Pseudomonas parafulva species 0 1 2954 157782 9 27555 136843 species group 0 1 2271 47878 Pseudomonas azotoformans species 0 76761 1 1382 species 0 Pseudomonas veronii 294 1 14764 species 0 Pseudomonas fluorescens 1 1319 47879 Pseudomonas corrugata 0 species 380021 1 2202 species 0 Pseudomonas protegens 75612 1 1604 species 0 Pseudomonas mandelii Pseudomonas poae species 0 1241 1 200451 200450 1461 1 0 species Pseudomonas trivialis 76758 1 1311 0 species Pseudomonas orientalis Pseudomonas rhizosphaerae 0 species 1482 1 216142 Pseudomonas antarctica 0 species 959 1 219572 136841 27913 6 0 species group 0 species Pseudomonas alcaligenes 43263 2329 1 287 1 8896 0 species Pseudomonas aeruginosa 0 species subgroup 1 2557 1232139 Pseudomonas furukawaii species 0 2557 1 1149133 Pseudomonas citronellolis 0 species 4592 1 53408 1 2366 53412 Pseudomonas resinovorans species 0 7173 1 300 Pseudomonas mendocina 0 species 12607 2 136846 0 species group 74829 1 1867 species 0 Pseudomonas balearica 578833 10740 1 0 species subgroup 316 1 10740 0 species Pseudomonas stutzeri 65741 2218 1 species 0 Pseudomonas knackmussii 0 species Pseudomonas lurida 244566 1 1161 species group 0 6 31425 136845 2289 1 47885 Pseudomonas oryzihabitans 0 species 3784 1 78327 Pseudomonas mosselii species 0 species 0 Pseudomonas fulva 47880 1 2605 76759 1 3896 species 0 Pseudomonas monteilii 70775 1 1506 0 species Pseudomonas plecoglossicida Pseudomonas putida 0 species 17345 1 303 Pseudomonas entomophila species 0 1 1057 312306 30 43233 196821 0 no rank Pseudomonas sp. LH1G9 species 0 1 1497 2083055 species 0 Pseudomonas sp. VLB120 69328 1 1056 1649877 1 1670 0 species Pseudomonas sp. CCOS 191 1 2043 1283291 Pseudomonas sp. URMO17WK12:I11 0 species 1277 1 2069256 Pseudomonas sp. XWY-1 species 0 1 1013 1659194 Pseudomonas sp. GR 6-02 0 species species 0 Pseudomonas sp. M30-35 1981174 1 343 1259844 1 1357 0 species Pseudomonas sp. FGI182 1 1818 1636610 Pseudomonas sp. PONIH3 0 species Pseudomonas sp. JY-Q 0 species 1486 1 1338689 Pseudomonas sp. MYb193 species 0 1 880 1827300 0 species Pseudomonas sp. Os17 1500686 1675 1 1415630 1112 1 0 species Pseudomonas sp. TKP Pseudomonas sp. TCU-HL1 0 species 1 2275 1856685 species 0 Pseudomonas sp. LPH1 1898684 1859 1 2083054 1034 1 0 species Pseudomonas sp. LG1D9 1930532 1 1803 species 0 Pseudomonas sp. CC6-YY-74 1931241 1180 1 species 0 Pseudomonas sp. S-6-2 2067572 1 1384 0 species Pseudomonas sp. NC02 1207075 1276 1 0 species Pseudomonas sp. UW4 Pseudomonas sp. StFLB209 0 species 1914 1 1028989 Pseudomonas sp. St29 0 species 1 1701 1500687 1294143 1 2820 species 0 Pseudomonas sp. ATCC 13867 1 1637 2083052 Pseudomonas sp. SWI36 species 0 Pseudomonas sp. MRSN12121 0 species 1885 1 1611770 2083051 800 1 0 species Pseudomonas sp. SWI6 1 963 2083053 Pseudomonas sp. SWI44 species 0 Pseudomonas sp. HLS-6 0 species 1 936 2049589 1 1176 1534110 Pseudomonas sp. DR 5-09 species 0 2018067 1 1363 species 0 Pseudomonas sp. FDAARGOS_380 3393 1 104087 Pseudomonas frederiksbergensis species 0 1 1127 237609 Pseudomonas alkylphenolica species 0 species group 0 8 19386 136849 no rank 0 2775504 918 1 1 918 1206777 Pseudomonas sp. Lz4W species 0 3843 2 251698 0 species subgroup 1766 1 47877 Pseudomonas amygdali species 0 2077 1 29438 Pseudomonas savastanoi 0 species species subgroup 0 251695 8132 1 317 8132 1 0 species Pseudomonas syringae 33069 1374 1 0 species Pseudomonas viridiflava Pseudomonas syringae group genomosp. 3 0 species 2805 1 251701 964 1 36746 Pseudomonas cichorii species 0 Pseudomonas avellanae 0 species 1 1350 46257 1 1954 101564 Pseudomonas alcaliphila species 0 1 985 1853130 Pseudomonas silesiensis 0 species 0 species Pseudomonas koreensis 198620 2337 1 1554 1 157783 Pseudomonas cremoricolorata 0 species 749 1 1788301 Pseudomonas versuta species 0 species group 0 2 10857 136842 587753 1 8761 0 species Pseudomonas chlororaphis Pseudomonas fragi species 0 1 2096 296 1849530 2 2 1 462 0 genus Oblitimonas 460 1 1697053 Oblitimonas alkaliphila 0 species 0 subfamily 3 6460 351 0 genus Azotobacter 352 45 3 1 6460 0 species Azotobacter vinelandii 354 1 2454 353 1 3961 species 0 Azotobacter chroococcum Aeromonadales order 0 29 200 1 52441 135624 84642 28 523 52241 1 0 family Aeromonadaceae 1 887 3 3 225143 Oceanisphaera 0 genus 389 1 1903694 Oceanisphaera sp. AMac2203 species 0 0 species Oceanisphaera profunda 1416627 495 1 Tolumonas genus 0 1184 1 2 9 43947 Tolumonas auensis species 0 1175 1 43948 2 16 2667 1 129577 Oceanimonas 0 genus no rank 0 2651 1 2636315 species 0 Oceanimonas sp. GK1 511062 1 2651 Zobellella genus 0 2570 1 2 22 347533 347534 2548 1 0 species Zobellella denitrificans genus 0 Aeromonas 642 18 3029 44410 1 species 0 Aeromonas media 651 1 1742 0 no rank 257493 12735 8 1636607 1 1422 species 0 Aeromonas sp. ASNIH2 1 1288 1636608 Aeromonas sp. ASNIH3 0 species 1758179 1 1612 0 species Aeromonas sp. ASNIH5 Aeromonas sp. CA23 0 species 2179 1 2033032 Aeromonas sp. ASNIH1 0 species 1 1235 1636606 1636609 1 2267 species 0 Aeromonas sp. ASNIH4 2033033 1652 1 0 species Aeromonas sp. CU5 1080 1 1920107 Aeromonas sp. ASNIH7 0 species species 0 Aeromonas dhakensis 196024 1880 1 Aeromonas rivipollensis 0 species 2122 1 948519 648 1267 1 0 species Aeromonas caviae 644 10933 1 species 0 Aeromonas hydrophila 652 1 1600 species 0 Aeromonas schubertii 1 4323 654 Aeromonas veronii 0 species species 0 Aeromonas salmonicida 645 2926 1 1853 1 558964 Aeromonas aquatica species 0 order 0 Chromatiales 135613 1 32697 592 50 23 3 1675 1 1676141 Wenzhouxiangellaceae family 0 genus 0 Wenzhouxiangella 1676142 1652 1 39 2 1579979 1613 1 species 0 Wenzhouxiangella marina Woeseiaceae family 0 2 3 665 1 1738654 Woeseia 0 genus 2 10 663 1 1738655 1 653 1548547 Woeseia oceani 0 species 451214 2211 2 no rank 0 0 genus Thiohalobacter 1273155 1 2211 40 2 Thiohalobacter thiocyanaticus 0 species 1 2171 585455 Ectothiorhodospiraceae family 0 13054 1 166 18 72276 2 13 1 1027 85108 Halorhodospira genus 0 1053 1 1014 0 species Halorhodospira halophila 1051 2 30 1788 1 0 genus Ectothiorhodospira no rank 0 2684909 1 1758 Ectothiorhodospira sp. BSL-9 0 species 1 1758 1442136 1335745 48 3 776 1 0 genus Spiribacter Spiribacter curvatus 0 species 1 518 1335757 Spiribacter salinus 0 species 1 210 1335746 genus 0 Thioalkalivibrio 106633 6883 1 84 6 2621013 1201 1 no rank 0 396595 1 1201 species 0 Thioalkalivibrio sp. K90mix Thioalkalivibrio versutus 0 species 1 1572 106634 0 species Thioalkalivibrio sulfidiphilus 1033854 1 2173 1 902 108010 Thioalkalivibrio paradoxus 0 species Thioalkalivibrio nitratireducens species 0 1 951 186931 Acidihalobacter 0 genus 1 889 2 16 1765964 species 0 Acidihalobacter prosperus 160660 873 1 0 genus Alkalilimnicola 133193 1525 1 26 2 species 0 Alkalilimnicola ehrlichii 351052 1 1499 0 family Chromatiaceae 1046 1 11864 245 17 1 1910 13 2 85072 Allochromatium 0 genus Allochromatium vinosum 0 species 1897 1 1049 genus 0 Nitrosococcus 1227 1 1044 3 4 1229 1 327 0 species Nitrosococcus oceani 133539 342 1 species 0 Nitrosococcus halophilus 473531 372 1 0 species Nitrosococcus watsonii 0 genus 1 195 1980513 195 1 1630141 Candidatus Nitrosoglobus terrae species 0 82569 1168 1 no rank 0 1 1168 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a species 0 Thioflavicoccus genus 0 35 2 1381 1 156885 Thioflavicoccus mobilis 0 species 1346 1 80679 Thiodictyon genus 0 2563 1 2 23 53392 1166950 2540 1 0 species Candidatus Thiodictyon syntrophicum 13724 2 42 1425 1 genus 0 Thiocystis Thiocystis violascens species 0 1383 1 73141 1 1933 35 2 85076 Marichromatium 0 genus 1 1898 37487 Marichromatium purpuratum species 0 Halothiobacillaceae family 0 4 14 1387 1 255526 1373 1 114 3 109262 Halothiobacillus 0 genus 0 no rank 646 1 2636392 1 646 1860122 Halothiobacillus sp. LS2 0 species 0 species Halothiobacillus neapolitanus 927 1 613 449719 1249 2 0 family 437504 1 1249 4 2 0 genus Granulosicoccus species 0 Granulosicoccus antarcticus 437505 1245 1 Legionellales 0 order 8367 1 20 3 118969 Coxiellaceae family 0 1 5 1950 1 118968 genus 0 Coxiella 776 1761 1 3 5 1 1506 777 Coxiella burnetii species 0 0 no rank 250 1 2676648 Coxiella endosymbiont of Amblyomma americanum species 0 250 1 325775 no rank 0 188 1 134284 Coxiella-like endosymbiont species 0 1 188 1592897 31 14 1 6414 444 Legionellaceae family 0 0 genus Legionella 445 8 12 6041 1 313 1 45067 Legionella lansingensis species 0 0 species Legionella oakridgensis 29423 420 1 2005262 1 273 0 species Legionella endosymbiont of Polyplax serrata 446 1835 1 species 0 Legionella pneumophila 0 species Legionella longbeachae 450 1 504 Legionella waltersii species 0 477 1 66969 Legionella hackeliae species 0 1 541 449 415 1 28087 Legionella sainthelensi species 0 450 1 96230 Legionella fallonii 0 species Legionella spiritensis species 0 1 504 452 1 301 1867846 Legionella clemsonensis species 0 0 genus 465 1 342 0 species Tatlockia micdadei 451 1 342 Xanthomonadales order 0 54 817 91054 1 135614 0 family Xanthomonadaceae 32033 39 763 1 75197 Stenotrophomonas 0 genus 630 9 28673 1 40323 196198 4 8257 no rank 0 1 2239 1904944 Stenotrophomonas sp. LM091 0 species 0 species Stenotrophomonas sp. KCTC 12332 1793721 1 1964 1 1986 1827305 Stenotrophomonas sp. MYb57 0 species Stenotrophomonas sp. WZN-1 species 0 2068 1 2005046 0 species group 995085 1 12665 Stenotrophomonas maltophilia species 0 12665 1 40324 216778 1628 1 0 species Stenotrophomonas rhizophila species 0 Stenotrophomonas nitritireducens 83617 1 2028 1 3465 128780 Stenotrophomonas acidaminiphila 0 species 93 5 10281 1 68 Lysobacter genus 0 0 species Lysobacter antibioticus 84531 1 2477 0 species Lysobacter capsici 435897 1 3051 2120 1 262324 Lysobacter gummosus 0 species 0 species Lysobacter enzymogenes 69 1 2540 0 genus Xylella 2370 1 663 2 2 2371 1 661 0 species Xylella fastidiosa Xanthomonas 0 genus 1 28390 1384 17 338 29447 799 1 species 0 Xanthomonas albilineans 1 1171 366650 Xanthomonas alfalfae 0 species 1341 1 56460 Xanthomonas vesicatoria 0 species 869 1 1985254 Xanthomonas phaseoli species 0 0 species Xanthomonas perforans 442694 1269 1 species 0 Xanthomonas fragariae 48664 1 690 0 species Xanthomonas euvesicatoria 456327 1 1113 Xanthomonas axonopodis species 0 1214 1 53413 Xanthomonas sacchari species 0 1 2644 56458 1 1100 56454 Xanthomonas hortorum 0 species 643453 2 5191 species group 0 1 3836 346 Xanthomonas citri 0 species Xanthomonas fuscans species 0 1 1355 366648 1 2868 343 Xanthomonas translucens 0 species species 0 Xanthomonas vasicola 56459 1162 1 0 species Xanthomonas oryzae 347 1 1846 species 0 Xanthomonas campestris 339 3729 1 1 5347 3 68 83618 Pseudoxanthomonas genus 0 species 0 Pseudoxanthomonas suwonensis 314722 3304 1 1975 1 415229 Pseudoxanthomonas spadix species 0 1080 1 10 2 83614 Luteimonas 0 genus 1070 1 2006110 Luteimonas sp. 100111 0 species Rhodanobacteraceae 0 family 15040 1 105 14 1775411 892 1 2233801 genus 0 892 1 2021234 Xanthomonadales bacterium D13 0 species Dyella genus 0 6943 1 4 114 231454 1 1949 1379159 Dyella jiangningensis species 0 231455 1 2151 0 species Dyella japonica species 0 Dyella thiooxydans 445710 2729 1 323413 1729 1 15 2 0 genus Dokdonella species 0 Dokdonella koreensis 323415 1 1714 75309 2428 1 28 2 genus 0 Rhodanobacter 666685 2400 1 0 species Rhodanobacter denitrificans 242605 26 2 1592 1 0 genus Luteibacter 242606 1 1566 species 0 Luteibacter rhizovicinus 0 genus Frateuria 70411 1 1351 2 13 Frateuria aurantia 0 species 1 1338 81475 310 2 135615 0 order 2 310 868 0 family 310 1 2 1 869 Dichelobacter 0 genus 1 309 870 Dichelobacter nodosus 0 species 1 6683 12 51 135618 Methylococcales 0 order Methylococcaceae 0 family 6632 1 11 73 403 1 1351 46 2 413 Methylococcus genus 0 414 1305 1 species 0 Methylococcus capsulatus Methylovulum 0 genus 746 1 5 2 762296 species 0 Methylovulum psychrotolerans 1704499 1 741 47 5 1 3631 416 Methylomonas 0 genus Methylomonas methanica species 0 1 596 421 739 1 1538553 Methylomonas denitrificans species 0 941 1 702114 Methylomonas koyamae 0 species no rank 0 2608980 1308 1 1727196 1308 1 0 species Methylomonas sp. DH-1 39773 1 831 genus 0 1 831 271065 Methylomicrobium alcaliphilum species 0 33811 2 3245 no rank 0 endosymbiont of unidentified scaly snail isolate Monju species 0 1537 1 1248727 1 1708 83406 gamma proteobacterium HdN1 0 species 203691 67110 58 phylum 0 203692 67110 1 58 251 0 class Spirochaetia Brachyspirales 0 order 11266 1 4 7 1643686 73 6 1 11262 143786 Brachyspiraceae 0 family Brachyspira genus 0 67 5 1 11189 29521 2408 1 159 Brachyspira hyodysenteriae 0 species 84377 1868 1 0 species Brachyspira intermedia 1650 1 84378 Brachyspira murdochii 0 species species 0 Brachyspira pilosicoli 52584 1 5196 order 0 1643688 3970 8 1 3970 8 15 170 Leptospiraceae 0 family genus 0 Leptospira 171 28 6 3210 1 172 1 452 species 0 Leptospira biflexa Leptospira interrogans species 0 943 1 173 1 552 28452 Leptospira alstonii 0 species 585 1 28183 Leptospira santarosai 0 species 174 1 650 species 0 Leptospira borgpetersenii 745 1 338321 genus 0 0 species Turneriella parva 29510 745 1 Spirochaetales order 0 1 51623 1327 42 136 Spirochaetaceae 0 family 24 728 45130 1 137 3690 1 12 3 146 Spirochaeta genus 0 species 0 Spirochaeta thermophila 154 1692 1 46355 1986 1 0 species Spirochaeta africana genus 0 Salinispira 1616789 11 2 1630 1 1619 1 1307761 Salinispira pacifica species 0 Treponema 0 genus 32473 1 12 1530 157 221027 5789 1 0 species Treponema putidum 0 species Treponema azotonutricium 150829 1 1801 1 139 53435 Treponema paraluiscuniculi 0 species 158 1 3315 0 species Treponema denticola 1 2239 81028 Treponema brennaborense 0 species 1354 1 215591 Treponema caldarium species 0 1 8665 167 Treponema succinifaciens 0 species no rank 0 1 5115 2638727 5115 1 1539298 Treponema sp. OMZ 838 species 0 1 1515 88058 Treponema primitia 0 species Treponema pallidum species 0 148 1 160 409322 1 863 species 0 Treponema pedis 1 4824 4 4 399320 Sphaerochaeta 0 genus 1131703 1 2510 species 0 Sphaerochaeta globosa Sphaerochaeta coccoides species 0 1 1228 273376 0 species Sphaerochaeta pleomorpha 1131707 1082 1 1911556 1785 1 2 4 0 genus Sediminispirochaeta Sediminispirochaeta smaragdinae 0 species 1 1781 55206 Borreliaceae family 0 1 5166 8 17 1643685 2485 1 101 8 64895 Borreliella 0 genus species 0 Borrelia mayonii 1674146 1 240 1 294 139 Borreliella burgdorferi species 0 species 0 Borreliella bissettii 64897 1 215 species 0 Borreliella bavariensis 664662 323 1 Borreliella valaisiana species 0 203 1 62088 0 species Borreliella afzelii 29518 311 1 Borreliella garinii species 0 798 1 29519 8 28 2673 1 138 Borrelia genus 0 Borrelia hermsii 0 species 345 1 140 142 317 1 0 species Borrelia turicatae 1 395 40834 Borrelia duttonii 0 species 0 species Borrelia miyamotoi 47466 1 663 44449 1 373 0 species Borrelia recurrentis 242 1 141 Borrelia parkeri 0 species Borrelia anserina 0 species 310 1 143 200783 27 6603 0 phylum 0 class Aquificae 187857 27 8 6603 1 0 order Desulfurobacteriales 1485951 1 1214 4 5 4 8 1210 1 558314 Desulfurobacteriaceae 0 family 171868 400 1 0 genus species 0 Thermovibrio ammonificans 228745 400 1 2 5 802 1 64159 Desulfurobacterium genus 0 Desulfurobacterium thermolithotrophum 0 species 797 1 64160 Aquificales 0 order 5381 1 3 21 32069 Aquificaceae 0 family 2759 1 12 2 64898 2713 1 163 0 genus 0 species Aquifex aeolicus 63363 163 1 0 genus 939 1 192 0 species Hydrogenobacter thermophilus 940 192 1 413 1 1 3 75905 Thermocrinis 0 genus 136094 1 156 species 0 Thermocrinis albus species 0 Thermocrinis ruber 75906 1 256 0 genus Hydrogenobaculum 168657 1989 1 6 12 1977 5 2622382 no rank 0 Hydrogenobaculum sp. 3684 0 species 411 1 547143 411 1 547144 Hydrogenobaculum sp. HO 0 species species 0 Hydrogenobaculum sp. Y04AAS1 380749 1 333 Hydrogenobaculum sp. SN species 0 411 1 547146 Hydrogenobaculum sp. SHO species 0 1 411 547145 2269 1 6 7 224027 Hydrogenothermaceae 0 family 212790 3 3 1 1712 0 genus Sulfurihydrogenibium 0 no rank 1118 1 2619248 Sulfurihydrogenibium sp. YO3AOP1 0 species 1118 1 436114 309806 591 1 species 0 Sulfurihydrogenibium azorense 182899 550 1 1 2 genus 0 Persephonella 0 species Persephonella marina 309805 549 1 0 no rank 90150 2 350 Thermosulfidibacter 0 genus 3 2 1 350 412592 Thermosulfidibacter takaii species 0 347 1 412593 366 654969 1783270 0 clade phylum 0 8 5173 142182 219685 1 5173 29 8 class 0 Gemmatimonadetes Gemmatimonadales 0 order 5144 1 7 90 219686 41 6 1 5054 219687 Gemmatimonadaceae family 0 14 2 2895 1 1706036 Gemmatirosa genus 0 Gemmatirosa kalamazoonesis 0 species 2881 1 861299 0 genus Gemmatimonas 173479 3 15 1 2118 1 1031 1379270 Gemmatimonas phototrophica species 0 173480 1 1072 0 species Gemmatimonas aurantiaca 2 481 456828 phylum 0 456826 5 2 481 1 0 genus Candidatus Cloacimonas 0 species Candidatus Cloacimonas acidaminovorans 456827 1 476 68336 351 646290 clade 0 0 phylum 1134404 1829 6 1 1829 10 6 795747 Ignavibacteria 0 class 7 5 1 1819 795748 Ignavibacteriales order 0 family 0 795749 1218 1 0 genus 1218 1 795750 591197 1218 1 0 species Ignavibacterium album 0 family Melioribacteraceae 1334117 594 1 3 1 1134403 2 1 593 1 0 genus Melioribacter 1134405 592 1 0 species Melioribacter roseus 1 630387 323 79 976 Bacteroidetes phylum 0 Bacteroidetes Order II. Incertae sedis order 0 139 7 6975 1 1100069 6 90 1 6836 563843 Rhodothermaceae 0 family 0 genus Rhodothermus 29548 1 3350 2 39 Rhodothermus marinus species 0 3311 1 29549 Salinibacter 0 genus 1 1044 2 2 146918 species 0 Salinibacter ruber 146919 1 1042 1 2352 1196022 no rank 0 Rhodothermaceae bacterium RA species 0 2352 1 1779382 Bacteroidia class 0 70 83 1 467409 200643 1970189 4 11 1 3868 order 0 Marinilabiliales family 0 1223 1 1573805 genus 0 1 1223 2060722 1717717 1 1223 species 0 Marinifilaceae bacterium SPP2 1970190 4 3 1 642 0 family Salinivirgaceae Salinivirga 0 genus 2 1 1 638 1970191 1 637 1307839 Salinivirga cyanobacteriivorans species 0 0 family Prolixibacteraceae 1471398 1193 1 3 5 genus 0 Draconibacterium 1471399 1188 1 7 2 1168034 1 1181 0 species Draconibacterium orientale family 0 Marinilabiliaceae 558415 3 1 806 1 genus 0 Alkalitalea 1193324 2 2 1 805 Alkalitalea saponilacus species 0 803 1 889453 Bacteroidales order 0 463458 1 58 276 171549 0 family Tannerellaceae 2005525 27 7 44554 1 Parabacteroides genus 0 40753 1 73 3 375288 1 26277 2649774 0 no rank Parabacteroides sp. CT06 species 0 1 26277 2025876 0 species Parabacteroides distasonis 823 1 14403 Tannerella 0 genus 3 16 1 3774 195950 no rank 0 2620507 1 1921 712710 1921 1 species 0 Tannerella sp. oral taxon HOT-286 species 0 Tannerella forsythia 28112 1 1837 171550 13 5 1 16146 0 family Rikenellaceae 4 2 1 15247 239759 Alistipes genus 0 Alistipes finegoldii 0 species 1 15243 214856 genus 0 Mucinivorans 1611681 2 2 886 1 Mucinivorans hirudinis 0 species 1 884 1433126 171552 30 11 1 31400 0 family Prevotellaceae genus 0 Prevotella 838 1 31370 97 10 52227 1 4704 species 0 Prevotella dentalis 1177574 1906 1 0 species Prevotella jejuni 1 2111 589436 Prevotella fusca species 0 Prevotella ruminicola species 0 2959 1 839 species 0 Prevotella melaninogenica 28132 1 1776 28131 13244 1 0 species Prevotella intermedia 2638335 1253 1 no rank 0 species 0 Prevotella sp. oral taxon 299 652716 1253 1 species 0 Prevotella denticola 28129 1 2174 76123 1146 1 0 species Prevotella enoeca no rank 0 185291 1 851 1400053 851 1 0 species Bacteroidales bacterium CF 1853231 9 3 5909 1 0 family Odoribacteraceae 1 5900 2 1 283168 Odoribacter 0 genus 5899 1 28118 Odoribacter splanchnicus 0 species no rank 0 333046 5 193812 722 1 3 2 511434 Candidatus Azobacteroides 0 genus 511435 1 719 species 0 Candidatus Azobacteroides pseudotrichonymphae 909656 3 193090 0 genus Bacteroides salanitronis species 0 8213 1 376805 species 0 Bacteroides dorei 357276 1 75916 821 1 108961 species 0 Bacteroides vulgatus family 0 2005520 3385 6 1 2 1 1264 294702 Proteiniphilum 0 genus 1 1263 1642647 Proteiniphilum saccharofermentans 0 species 0 genus Petrimonas 307628 1 1082 2 2 1080 1 1642646 Petrimonas mucosa species 0 1784836 1 1039 2 1 genus 0 Fermentimonas Fermentimonas caenicola 0 species 1038 1 1562970 family 0 1 711 2005523 711 1 346096 genus 0 185300 1 711 species 0 Paludibacter propionicigenes Bacteroidaceae family 0 34 11 151309 1 815 816 151275 1 6017 10 0 genus Bacteroides 22954 1 818 Bacteroides thetaiotaomicron species 0 species 0 Bacteroides heparinolyticus 28113 6353 1 0 species Bacteroides helcogenes 290053 7116 1 species 0 Bacteroides zoogleoformans 28119 5951 1 1796613 1 15968 0 species Bacteroides caecimuris Bacteroides ovatus species 0 20540 1 28116 18186 1 246787 Bacteroides cellulosilyticus 0 species Bacteroides caccae species 0 1 16801 47678 1 31389 817 Bacteroides fragilis 0 species 4 9 3073 1 171551 Porphyromonadaceae family 0 Porphyromonas 0 genus 3064 1 5 3 836 1220 1 28123 Porphyromonas asaccharolytica species 0 0 species Porphyromonas gingivalis 837 1 1839 Barnesiellaceae family 0 3 9 12032 1 2005519 1 12023 54 2 397864 Barnesiella 0 genus species 0 Barnesiella viscericola 397865 1 11969 127 57 42934 1 768503 Cytophagia class 0 Cytophagales 0 order 274 56 1 42807 768507 family 0 Persicobacteraceae 1853234 2 3 915 1 Persicobacter genus 0 20 2 913 1 59740 2664020 893 1 0 no rank Persicobacter sp. JZB09 species 0 1 893 1085624 0 family 804 2 2762301 869806 2 4 804 1 0 genus Marivirga Marivirga tractuosa 0 species 800 1 1006 2395 1 4 9 200667 Flammeovirgaceae 0 family 0 no rank 980 1 340671 0 species Flammeovirgaceae bacterium 311 1257021 1 980 1 1406 2 3 59739 Flammeovirga genus 0 0 no rank 2637820 1403 1 1403 1 1191459 Flammeovirga sp. MY04 0 species 0 family Cyclobacteriaceae 563798 3153 1 8 52 3 2 723 1 390846 Echinicola genus 0 0 species Echinicola vietnamensis 390884 720 1 genus 0 246875 1 414 1 414 1727163 Algoriphagus sp. M8-2 0 species genus 0 602 1 232244 Belliella baltica species 0 602 1 232259 Cyclobacterium genus 0 3 14 1362 1 68288 0 species Cyclobacterium marinum 104 656 1 Cyclobacterium amurskyense species 0 1 692 320787 1 427 3 1 1501348 Amoebophilaceae family 0 1 278 281119 0 genus 1 278 281120 Candidatus Amoebophilus asiaticus 0 species 0 genus 273135 148 1 0 no rank 2641185 148 1 0 species Cardinium endosymbiont of Encarsia pergandiella 249402 148 1 family 0 Bernardetiaceae 1937968 3 5 1 1444 1937972 3 2 1 1439 0 genus Bernardetia Bernardetia litoralis species 0 1436 1 999 Hymenobacteraceae 0 family 55 16 1 24010 1853232 genus 0 Pontibacter 323449 1 2998 3 32 388950 1 1678 0 species Pontibacter akesuensis 400092 1288 1 species 0 Pontibacter korlensis 89966 17757 1 8 177 genus 0 Hymenobacter 1411621 2714 1 0 species Hymenobacter sedentarius 1446467 1 2425 0 species Hymenobacter swuensis 0 no rank 5 12441 2615202 Hymenobacter sp. PAMC 26628 0 species 1 3537 1484118 0 species Hymenobacter sp. APR13 1356852 1 2654 Hymenobacter sp. DG25B 0 species 1 2157 1385664 Hymenobacter sp. DG25A 0 species 1 1684 1385663 2409 1 1484116 Hymenobacter sp. PAMC 26554 species 0 Rufibacter 0 genus 1 3200 35 4 1379908 species 0 Rufibacter tibetensis 512763 1 1153 no rank 0 2639626 2 2012 Rufibacter sp. DG31D species 0 1319 1 1379910 1379909 1 693 0 species Rufibacter sp. DG15C family 0 Cytophagaceae 89373 57 16 9385 1 0 genus 861914 1 668 2620963 1 668 0 no rank 1834519 668 1 species 0 Fibrella sp. ES10-3-2-2 0 genus Cytophaga 978 1 884 2 9 875 1 985 Cytophaga hutchinsonii species 0 Runella 0 genus 2 7 1080 1 105 1 1073 106 Runella slithyformis species 0 genus 0 Spirosoma 107 4441 1 6 21 Spirosoma montaniterrae species 0 1 982 1178516 755 1 1379870 Spirosoma radiotolerans species 0 564064 1015 1 species 0 Spirosoma rigui Spirosoma aerolatum 0 species 1 849 1211326 2057025 819 1 species 0 Spirosoma sp. HA7 Dyadobacter 0 genus 3 2 1504 1 120831 1 1501 94254 Dyadobacter fermentans species 0 2 25 751 1 319458 Leadbetterella genus 0 0 species Leadbetterella byssophila 316068 726 1 1918 1 6 4 1937959 Saprospiria class 0 Saprospirales 0 order 1 1914 5 1 1936988 family 0 1 572 89374 genus 0 1007 572 1 1 572 1008 Saprospira grandis species 0 Haliscomenobacteraceae family 0 1 1341 1 3 1937961 2349 1340 1 8 2 0 genus Haliscomenobacter 1 1332 2350 Haliscomenobacter hydrossis species 0 Sphingobacteriia 0 class 9 23 1 14758 117747 0 order Sphingobacteriales 200666 22 27 1 14749 14722 1 21 72 84566 Sphingobacteriaceae family 0 41 6 3765 1 28453 Sphingobacterium 0 genus no rank 0 3121 4 2609468 Sphingobacterium sp. ML3W species 0 1 765 1538644 842 1 1933220 Sphingobacterium sp. B29 0 species Sphingobacterium sp. 21 species 0 662 1 743722 species 0 Sphingobacterium sp. G1-14 2003121 1 852 1 603 1010 Sphingobacterium mizutaii 0 species Mucilaginibacter genus 0 4 14 1 3519 423349 1 1605 1550579 Mucilaginibacter gotjawali species 0 1 539 1234841 Mucilaginibacter sp. BJC16-A31 species 0 no rank 0 2617802 1 1361 1300914 1 1361 0 species Mucilaginibacter sp. PAMC 26640 0 genus Pedobacter 84567 6 23 1 4365 Pedobacter ginsengisoli species 0 846 1 363852 2628915 877 1 0 no rank Pedobacter sp. PACM 27299 species 0 877 1 1727164 species 0 Pedobacter cryoconitis 188932 1 973 Pedobacter heparinus species 0 706 1 984 1 940 430522 Pedobacter steynii species 0 0 genus Pseudopedobacter 1649482 3 2 976 1 1 973 151895 Pseudopedobacter saltans species 0 929509 1 1099 0 genus 995 1099 1 0 species Solitalea canadensis 84568 926 1 0 no rank 1986952 1 926 0 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 Flavobacteriia class 0 88650 1 51 145 117743 Flavobacteriales order 0 88599 1 144 132 200644 1853230 3 1 949 1 family 0 Crocinitomicaceae 0 genus Fluviicola 332102 2 5 948 1 1 943 191579 Fluviicola taffensis 0 species family 0 1755828 330 1 1755829 330 1 genus 0 Ichthyobacterium seriolicida 0 species 1 330 242600 family 0 2762318 22 21822 0 genus Weeksella 1013 2 25 551 1 species 0 Weeksella virosa 1014 526 1 4 2 1 1050 34084 Riemerella 0 genus 1 1046 34085 Riemerella anatipestifer 0 species 2782232 11235 10 no rank 0 10421 1 9 39 59732 Chryseobacterium genus 0 Chryseobacterium gallinarum 0 species 1 1186 1324352 Chryseobacterium glaciei 0 species 1182 1 1685010 species 0 Chryseobacterium camelliae 1265445 1 845 2593645 3 3808 0 no rank Chryseobacterium sp. T16E-39 0 species 1 1447 2015076 Chryseobacterium sp. StRB126 0 species 1296 1 878220 species 0 Chryseobacterium sp. IHB B 17019 1721091 1 1065 0 species Chryseobacterium piperi 558152 893 1 0 species Chryseobacterium indologenes 253 1 2468 genus 0 814 1 2782228 Chryseobacterium taklimakanense species 0 814 1 536441 26 6 1 6851 308865 Elizabethkingia 0 genus 238 1 1306 species 0 Elizabethkingia meningoseptica 0 species Elizabethkingia anophelis 1117645 2342 1 0 species Elizabethkingia genomosp. 4 1756150 807 1 1756149 910 1 0 species Elizabethkingia genomosp. 3 Elizabethkingia miricola 0 species 1 1460 172045 genus 0 Ornithobacterium 28250 8 2 1 2135 2127 1 28251 Ornithobacterium rhinotracheale species 0 0 family Flavobacteriaceae 49546 1 62188 395 102 0 genus Maribacter 252356 1 3626 5 7 2662 3 2615042 no rank 0 1836467 1026 1 0 species Maribacter sp. T28 Maribacter sp. HTCC2170 0 species 1 637 313603 1644130 999 1 species 0 Maribacter sp. 1_2014MBL_MicDiv Maribacter cobaltidurans species 0 1 957 1178778 0 genus Nonlabens 363408 5 3 1993 1 319236 441 1 species 0 Nonlabens sediminis 0 no rank 2615035 2 887 0 species Nonlabens sp. MB-3u-79 2058134 1 443 Nonlabens sp. MIC269 species 0 1 444 1476901 328515 662 1 0 species Nonlabens dokdonensis genus 0 1 497 153265 species 0 Aequorivita sublithincola 101385 1 497 830 1 2 1 1649495 Seonamhaeicola genus 0 2622645 1 829 0 no rank 1936081 1 829 species 0 Seonamhaeicola sp. S2-3 717 1 112040 0 genus 1 717 63186 Zobellia galactanivorans 0 species 0 genus Winogradskyella 286104 17 3 1 1560 2615021 2 1543 0 no rank 1936080 1 702 species 0 Winogradskyella sp. J14-2 Winogradskyella sp. PG-2 0 species 841 1 754409 1527 1 4 12 326319 Dokdonia genus 0 2 1063 2615033 no rank 0 0 species Dokdonia sp. MED134 313590 1 421 Dokdonia sp. 4H-3-7-5 species 0 642 1 983548 452 1 326320 Dokdonia donghaensis species 0 104267 16 5 3679 1 0 genus Tenacibaculum 1024 1 669041 Tenacibaculum dicentrarchi species 0 Tenacibaculum todarodis 0 species 1 876 1850252 species 0 Tenacibaculum jejuense 584609 1184 1 107401 579 1 0 species Tenacibaculum maritimum genus 0 1518147 1 766 0 species Wenyingzhuangia fucanilytica 1790137 766 1 1 506 83612 0 genus Psychroflexus torquis 0 species 1 506 57029 genus 0 Capnocytophaga 1016 14 15 7297 1 Capnocytophaga cynodegmi 0 species 1 504 28189 1018 490 1 0 species Capnocytophaga ochracea species 0 Capnocytophaga sputigena 1019 743 1 Capnocytophaga gingivalis species 0 1 343 1017 45243 1 436 species 0 Capnocytophaga haemolytica 327575 1 365 species 0 Capnocytophaga leadbetteri 6 2754 2640652 no rank 0 Capnocytophaga sp. H4358 0 species 607 1 1945658 1 496 1945657 Capnocytophaga sp. H2931 species 0 0 species Capnocytophaga sp. oral taxon 323 1705617 1 304 0 species Capnocytophaga sp. oral taxon 878 1316596 367 1 1 582 209053 Capnocytophaga sp. ChDC OS43 0 species 1316593 1 398 species 0 Capnocytophaga sp. oral taxon 864 0 species Capnocytophaga canimorsus 28188 940 1 species 0 Capnocytophaga stomatis 1848904 708 1 genus 0 Cellulophaga 104264 2 4 3128 1 951 1 76594 Cellulophaga baltica species 0 Cellulophaga algicola 0 species 1 749 59600 Cellulophaga lytica species 0 1 1426 979 Flavobacterium genus 0 1 8845 10 9 237 Flavobacterium indicum species 0 659 1 312277 0 species Flavobacterium branchiophilum 55197 723 1 Flavobacterium psychrophilum species 0 919 1 96345 Flavobacterium columnare 0 species 1 1518 996 Flavobacterium commune species 0 1 869 1306519 Flavobacterium crassostreae species 0 730 1 1763534 1492737 1 679 0 species Flavobacterium gilvum 0 species Flavobacterium johnsoniae 986 2738 1 genus 0 1 505 389486 0 no rank 1 505 2648869 1 505 1453352 Sediminicola sp. YIK13 0 species 358023 1 848 2 2 0 genus Lutibacter 0 species Lutibacter profundi 1622118 846 1 1204360 1 585 0 genus 585 1 762954 Siansivirga zeaxanthinifaciens 0 species Formosa 0 genus 5 3 593 1 225842 2644710 2 588 no rank 0 1 288 1336795 Formosa sp. Hel3_A1_48 0 species Formosa sp. Hel1_33_131 species 0 300 1 1336794 178469 1 570 0 genus species 0 Arenibacter algicola 616991 570 1 292691 2545 1 5 18 genus 0 Gramella 2126553 612 1 species 0 Gramella sp. SH35 Gramella flava species 0 1 695 1486245 1 658 411153 Gramella forsetii species 0 species 0 Gramella sp. LPB0144 1913577 562 1 0 genus 1 930 2700084 930 1 1850246 Lutibacter sp. LPB0138 0 species 0 genus 261827 1 777 1736674 1 777 0 species Algibacter alginicilyticus 291183 1 2541 3 4 genus 0 Lacinutrix Lacinutrix venerupis 0 species 1 925 1486034 2647285 2 1613 no rank 0 Lacinutrix sp. 5H-3-7-4 species 0 896 1 983544 species 0 Lacinutrix sp. Bg11-31 2057808 1 717 genus 0 336276 757 1 no rank 0 2615019 757 1 1 757 2058135 Olleya sp. Bg11-27 species 0 52959 13 6 4960 1 genus 0 Polaribacter 996801 1 1003 species 0 Polaribacter reichenbachii 2818 3 196858 0 no rank 0 species Polaribacter sp. BM10 1529069 1 806 species 0 Polaribacter sp. ALD11 2058137 1155 1 0 species Polaribacter sp. MED152 313598 1 857 1774273 1126 1 species 0 Polaribacter vadi 0 genus 1176327 1 829 0 no rank 1 829 2636237 0 species Aureitalea sp. RR4-38 2094025 829 1 1562 2 61432 no rank 0 531844 770 1 species 0 Flavobacteriaceae bacterium 3519-10 1150389 792 1 0 species Flavobacteriaceae bacterium UJ101 0 genus 393005 1 758 Tamlana sp. UJ94 0 species 1 758 2069432 Zunongwangia 0 genus 14 2 1 932 417127 species 0 Zunongwangia profunda 398743 1 918 genus 0 Myroides 76831 40 5 3340 1 0 species Myroides profundi 480520 738 1 2642485 2 1566 0 no rank Myroides sp. A21 species 0 714 1 1583100 1 852 1458492 Myroides sp. ZB35 0 species 76832 1 996 0 species Myroides odoratimimus 0 genus 111500 2 939 species 0 Muricauda ruestringensis 111501 583 1 1 356 516051 Muricauda lutaonensis species 0 0 genus 1209327 692 1 Flavivirga eckloniae species 0 1 692 1803846 1 844 14 2 143222 Salegentibacter genus 0 1 830 2633436 0 no rank 1729720 1 830 species 0 Salegentibacter sp. T436 482 1 216431 0 genus Croceibacter atlanticus species 0 482 1 313588 genus 0 Robiginitalea 252306 1 833 2 2 831 1 252307 Robiginitalea biformata 0 species 509 2 1333713 family 0 3 2 509 1 267986 Owenweeksia genus 0 1 506 253245 Owenweeksia hongkongensis species 0 10 5 1 2243 39782 Blattabacteriaceae family 0 genus 0 Blattabacterium 34098 9 71 1 2238 no rank 0 1449 6 2647581 367488 1 262 species 0 Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Blattella germanica) species 0 1 223 624186 Blattabacterium sp. (Blatta orientalis) species 0 1 167 367806 1 292 1186051 Blattabacterium sp. (Blaberus giganteus) species 0 species 0 Blattabacterium sp. (Nauphoeta cinerea) 1316444 293 1 1 212 39768 Blattabacterium sp. (Mastotermes darwiniensis) species 0 Blattabacterium cuenoti 0 species 382 1 1653831 0 species Blattabacterium punctulatus 164514 336 1 0 no rank 3 426 313602 1 341 2 1 336809 Candidatus Sulcia genus 0 340 1 336810 Candidatus Sulcia muelleri 0 species 1940138 1 85 0 genus 1 85 1415657 Candidatus Walczuchella monophlebidarum 0 species 1853228 12 14 7664 1 class 0 Chitinophagia 1853229 7652 1 13 11 0 order Chitinophagales family 0 Chitinophagaceae 563835 1 7641 12 57 1769012 1 671 genus 0 no rank 0 671 1 2636138 1850526 1 671 species 0 Arachidicoccus sp. BS20 genus 0 Niabella 379899 2126 1 3 8 Niabella ginsenosidivorans 0 species 1 1214 1176587 1 904 446683 Niabella soli species 0 0 genus 398041 1 521 1492898 1 521 0 species Flavisolibacter tropicus 79328 2 1653 genus 0 0 species Chitinophaga pinensis 79329 1 1181 Chitinophagaceae bacterium 13 0 species 1 472 2029983 649460 1115 1 2 8 0 genus Filimonas Filimonas lacunae 0 species 1107 1 477680 genus 0 Niastella 354354 1 1498 2 1 Niastella koreensis 0 species 1497 1 354356 phylum 0 1090 14074 22 191410 59 22 1 14074 0 class Chlorobia 14015 1 21 103 191411 Chlorobiales order 0 1 13912 20 84 191412 Chlorobiaceae family 0 Chlorobaculum genus 0 4 55 1 5534 256319 species 0 Chlorobaculum parvum 274539 2080 1 274537 2286 1 0 species Chlorobaculum limnaeum 1097 1 1113 species 0 Chlorobaculum tepidum 1 664 4 2 100715 Chloroherpeton genus 0 660 1 100716 Chloroherpeton thalassium species 0 0 genus Prosthecochloris 1101 5 4 1 2353 0 no rank 1900 3 2632826 810 1 281093 Prosthecochloris sp. GSB1 0 species 1868325 1 446 0 species Prosthecochloris sp. CIB 2401 Prosthecochloris sp. HL-130-GSB species 0 644 1 1974213 1102 1 449 0 species Prosthecochloris aestuarii no rank 0 274493 8 5277 0 genus Chlorobium 1091 1 3221 12 5 1295 1 1096 Chlorobium phaeobacteroides species 0 337090 331 1 0 species Chlorobium chlorochromatii 798 1 1092 Chlorobium limicola 0 species 1094 1 785 0 species Chlorobium phaeovibrioides Pelodictyon genus 0 3 9 1 2056 1099 34090 1 740 0 species Pelodictyon phaeoclathratiforme 1100 1307 1 0 species Pelodictyon luteolum 5 3025 65842 0 phylum class 0 Fibrobacteria 204430 3025 1 23 5 Fibrobacterales order 0 3002 1 8 4 218872 204431 1 2994 5 3 0 family Fibrobacteraceae Fibrobacter 0 genus 2 2 1 2989 832 species 0 Fibrobacter succinogenes 833 1 2987 Elusimicrobia phylum 0 2092 1 9 8 74152 1 1182 1 4 447830 Endomicrobia class 0 1181 3 1783344 0 order 1783343 1181 3 0 family 1408194 1 3 1 1181 genus 0 Endomicrobium 1408204 1 568 0 species Candidatus Endomicrobium trichonymphae species 0 Endomicrobium proavitum 1408281 612 1 641853 361 2 0 class 641854 2 361 order 0 641876 1 2 361 1 0 family Elusimicrobiaceae 0 genus 423604 1 360 360 1 423605 Elusimicrobium minutum species 0 99260 540 1 no rank 0 0 species uncultured Termite group 1 bacterium 167965 1 540 1930617 4 1793 0 phylum 1962850 4 5 1 1793 class 0 Calditrichae 1 1788 3 4 1962852 Calditrichales order 0 family 0 1784 2 1962854 genus 0 Caldithrix 187144 1784 1 2 3 187145 1781 1 species 0 Caldithrix abyssi 2323 3 1009 0 no rank 3 1009 1783234 0 clade 0 clade 95901 707 2 707 2 2497643 class 0 2 707 2497644 0 order 0 family 2 707 2497645 genus 0 Candidatus Babela 1551504 2 4 707 1 Candidatus Babela massiliensis species 0 1 703 673862 0 phylum 95818 1 302 302 1 1895827 0 no rank 0 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 1 302 704 4 2498710 clade 0 phylum 0 4 704 67814 693071 704 1 4 2 class 0 Caldisericia 702 3 693072 order 0 Caldisericaceae 0 family 3 3 702 1 693073 Caldisericum 0 genus 2 9 699 1 693074 690 1 693075 Caldisericum exile species 0 0 phylum 200940 1882 8 class 0 Thermodesulfobacteria 67799 8 2 1 1882 188710 1880 1 7 1 order 0 Thermodesulfobacteriales family 0 Thermodesulfobacteriaceae 188711 6 3 1879 1 444090 1 395 genus 0 species 0 Caldimicrobium thiodismutans 1653476 395 1 986 1 2 3 1740 Thermodesulfobacterium 0 genus 1295609 1 665 species 0 Thermodesulfobacterium geofontis 1 319 1741 Thermodesulfobacterium commune 0 species 241192 495 1 0 genus 171695 1 495 species 0 Thermodesulfatator indicus 3265 5 200938 phylum 0 0 class Chrysiogenetes 118001 5 4 1 3265 1 3261 4 72 189769 Chrysiogenales order 0 family 0 Chrysiogenaceae 189770 3 7 1 3189 0 genus Desulfurispirillum 393029 3182 1 2 5 Desulfurispirillum indicum 0 species 3177 1 936456 5 20 1 12692 57723 Acidobacteria 0 phylum 11261 1 97 17 204432 Acidobacteriia class 0 Acidobacteriales 0 order 9029 1 87 12 204433 Acidobacteriaceae 0 family 1 8942 11 137 204434 33973 2 50 1 1662 0 genus Acidobacterium 1 1612 33075 Acidobacterium capsulatum 0 species Candidatus Koribacter 0 genus 1 1920 2 50 658061 Candidatus Koribacter versatilis 0 species 1870 1 658062 392733 1 2557 14 3 0 genus Terriglobus 1 1402 392734 Terriglobus roseus 0 species species 0 Terriglobus saanensis 870903 1 1141 2666 1 24 3 940557 Granulicella genus 0 species 0 Granulicella mallensis 940614 1 1261 species 0 Granulicella tundricola 940615 1381 1 Solibacterales 0 order 4 66 2135 1 332160 332161 3 23 2069 1 0 family Solibacteraceae 2046 1 2 10 332162 Candidatus Solibacter genus 0 332163 2036 1 0 species Candidatus Solibacter usitatus class 0 Blastocatellia 1562566 1426 1 2 6 genus 0 1 1420 458032 Chloracidobacterium thermophilum 0 species 1 1420 458033 554 1 2138240 phylum 0 class 0 2138243 554 1 2138246 554 1 order 0 0 family 1 554 2138247 68335 554 1 genus 0 35786 554 1 0 species Coprothermobacter proteolyticus 40117 5878 14 phylum 0 5878 1 14 16 203693 Nitrospira class 0 Nitrospirales order 0 5862 1 13 99 189778 12 45 1 5763 189779 Nitrospiraceae family 0 genus 0 Nitrospira 1234 5 65 1 3436 species 0 Candidatus Nitrospira inopinata 1715989 752 1 Nitrospira moscoviensis 0 species 1177 1 42253 Nitrospira japonica species 0 644 1 1325564 1 798 330214 Nitrospira defluvii species 0 179 1291 1 4 1 genus 0 Leptospirillum 261386 1 542 0 species group Leptospirillum ferriphilum species 0 1 542 178606 261385 447 1 0 species group 447 1 1660083 Leptospirillum sp. Group II 'CF-1' species 0 species group 0 655606 301 1 301 1 180 Leptospirillum ferrooxidans species 0 Thermodesulfovibrio 0 genus 2 1 1 991 28261 990 1 28262 Thermodesulfovibrio yellowstonii species 0 0 phylum 1414 5 68297 203486 5 3 1414 1 class 0 Dictyoglomia 203487 1 4 1 1411 order 0 Dictyoglomales 203488 3 1410 family 0 0 genus Dictyoglomus 13 2 3 1 1410 Dictyoglomus thermophilum 0 species 726 1 14 Dictyoglomus turgidum species 0 1 682 513050 clade 0 1722 35915932 1783272 152 78101 1798711 clade 0 phylum 0 Cyanobacteria 1117 16 152 1 78101 order 0 Synechococcales 1890424 425 57 36472 1 0 family 2 811 2303730 1 811 2 1 170610 Halomicronema 0 genus 810 1 1209493 Halomicronema hongdechloris species 0 1890426 23636 1 33 106 family 0 Synechococcaceae 0 genus 1 360 146785 146786 360 1 species 0 Thermosynechococcus elongatus 167375 38 3 1 4845 genus 0 Cyanobium species 0 Cyanobium gracile 59930 1 2170 no rank 0 2627006 2637 1 1851505 2637 1 species 0 Cyanobium sp. NIES-981 genus 0 Dactylococcopsis 13034 2 1 1 424 292566 423 1 0 species Dactylococcopsis salina 17901 1 26 235 1129 Synechococcus 0 genus Synechococcus lividus species 0 385 1 33070 Synechococcus elongatus species 0 808 1 32046 0 no rank 2626047 23 16473 Synechococcus sp. PCC 7502 0 species 1 275 1173263 1 907 585425 Synechococcus sp. KORDI-52 0 species 166314 857 1 species 0 Synechococcus sp. WH 8109 Synechococcus sp. PCC 7003 0 species 1 539 374981 0 species Synechococcus sp. WH 7803 32051 1 740 Synechococcus sp. UTEX 2973 0 species 895 1 1350461 Synechococcus sp. CC9902 0 species 1 468 316279 species 0 Synechococcus sp. JA-3-3Ab 321327 1 1815 902 1 1916956 Synechococcus sp. SynAce01 species 0 29410 1 874 0 species Synechococcus sp. WH 8103 548 1 195248 Synechococcus sp. PCC 8807 species 0 195498 1 381 species 0 Synechococcus sp. PCC 7117 1 377 374982 Synechococcus sp. PCC 73109 species 0 0 species Synechococcus sp. KORDI-49 585423 1 1044 110662 1 900 species 0 Synechococcus sp. CC9605 1 1037 321332 Synechococcus sp. JA-2-3B'a(2-13) 0 species 386 1 195253 Synechococcus sp. PCC 6312 0 species species 0 Synechococcus sp. WH 8102 84588 1 856 species 0 Synechococcus sp. NIES-970 1827144 343 1 species 0 Synechococcus sp. CC9311 64471 375 1 1280380 507 1 species 0 Synechococcus sp. KORDI-100 316278 1 1037 species 0 Synechococcus sp. RCC307 0 species Synechococcus sp. PCC 7002 32049 410 1 1890428 9 5 1 2290 family 0 Merismopediaceae genus 0 Synechocystis 1142 58 4 1 2281 0 no rank 3 2223 2640012 1147 1 639 species 0 Synechocystis sp. PCC 6714 species 0 Synechocystis sp. PCC 6803 1148 1 792 0 species Synechocystis sp. IPPAS B-1465 2116702 1 792 1890438 6 52 3923 1 family 0 Leptolyngbyaceae 5 5 1 3871 47251 Leptolyngbya 0 genus 0 no rank 2554 3 2650499 Leptolyngbya sp. PCC 7376 species 0 429 1 111781 1516 1 1080068 Leptolyngbya sp. O-77 0 species 1 609 1752064 Leptolyngbya sp. NIES-3755 species 0 Leptolyngbya boryana 0 species 1312 1 1184 Acaryochloridaceae family 0 4 3 1 473 1890429 Acaryochloris genus 0 469 1 2 3 155977 466 1 155978 Acaryochloris marina species 0 1 4456 5 7 1213 Prochloraceae 0 family Prochlorococcus 0 genus 1 4449 12 4 1218 0 no rank 1026 2 2627481 1501269 425 1 0 species Prochlorococcus sp. MIT 0801 601 1 1501268 Prochlorococcus sp. MIT 0604 species 0 3411 1 1219 Prochlorococcus marinus 0 species 0 family 1890436 2 458 1152 2 25 458 1 0 genus Pseudanabaena no rank 0 433 1 2593292 Pseudanabaena sp. PCC 7367 0 species 1 433 82654 Pleurocapsales 0 order 14 8 1 2265 52604 family 0 Hyellaceae 1890500 1 453 3 3 Pleurocapsa genus 0 1 450 2 4 44474 Pleurocapsa minor 0 species 446 1 54308 1890498 6 4 1 1798 family 0 Dermocarpellaceae 1 1792 3 10 102115 Stanieria genus 0 937 1 2642663 0 no rank 1807358 1 937 species 0 Stanieria sp. NIES-3757 species 0 Stanieria cyanosphaera 102116 845 1 order 0 1890505 2 634 5 2 634 1 1890528 Chroococcidiopsidaceae 0 family 0 genus 629 1 54298 Chroococcidiopsis thermalis 0 species 629 1 54299 307596 6 23 1 3896 0 class Gloeobacteria Gloeobacterales order 0 1 3873 5 45 307595 42 4 3828 1 1890422 Gloeobacteraceae family 0 33071 1 3786 3 48 0 genus Gloeobacter 0 species Gloeobacter kilaueensis 1416614 1 1232 Gloeobacter violaceus 0 species 1 2506 33072 1 344 1983111 no rank 0 cyanobacterium endosymbiont of Epithemia turgida species 0 1 344 718217 order 0 Nostocales 1161 34 31 17638 1 18 39 1 10106 1162 Nostocaceae family 0 2185 1 7 4 1163 Anabaena 0 genus 2619674 1378 2 no rank 0 557 1 46234 Anabaena sp. 90 species 0 1647413 821 1 species 0 Anabaena sp. WA102 1 800 1165 Anabaena cylindrica species 0 genus 0 Nostoc 1177 1 6844 10 73 0 no rank 7 4282 2593658 860 1 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 0 species 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 748 1 0 species Nostoc sp. PCC 7120 103690 549 1 1869241 639 1 species 0 Nostoc sp. CENA543 317936 575 1 species 0 Nostoc sp. PCC 7107 species 0 Nostoc sp. NIES-3756 1751286 403 1 0 species Nostoc sp. PCC 7524 28072 1 508 Nostoc flagelliforme 0 species 1628 1 1306274 272131 861 1 0 species Nostoc punctiforme 3 3 1 1038 264688 Trichormus genus 0 539 1 264691 Trichormus variabilis 0 species Trichormus azollae 0 species 1 496 1164 1 483 3 2 1892263 Hapalosiphonaceae family 0 1190 2 3 1 481 genus 0 Fischerella no rank 0 478 1 494603 0 species Fischerella sp. NIES-3754 1752063 1 478 1185 1 1717 3 17 0 family Rivulariaceae Rivularia 0 genus 2 9 1700 1 373984 0 no rank 1691 1 2676603 1691 1 373994 Rivularia sp. PCC 7116 0 species 0 no rank 1219117 1 493 1 493 1940762 Nostocales cyanobacterium HT-58-2 species 0 family 0 8 4808 2661849 0 genus Calothrix 1186 40 8 4808 1 32054 1 650 species 0 Calothrix parietina 2619626 4118 6 no rank 0 1954171 1 591 0 species Calothrix sp. NIES-2098 510 1 2005462 Calothrix sp. NIES-3974 0 species Calothrix sp. 336/3 species 0 407 1 1337936 species 0 Calothrix sp. NIES-4101 2005461 799 1 0 species Calothrix sp. NIES-4071 2005469 1 1479 0 species Calothrix sp. PCC 7507 99598 332 1 1301283 43 16836 0 subclass 1150 6871 1 20 24 order 0 Oscillatoriales 1892249 9 3 1 890 family 0 Cyanothecaceae Cyanothece genus 0 47 2 1 881 43988 0 no rank 2649277 1 834 0 species Cyanothece sp. PCC 7425 395961 834 1 Coleofasciculaceae 0 family 1487 1 3 10 1892251 genus 0 Geitlerinema 63132 2 4 1 1477 0 no rank 2648775 1 1473 Geitlerinema sp. PCC 7407 species 0 1 1473 1173025 Oscillatoriaceae 0 family 11 6 2062 1 1892254 1158 1446 1 5 3 0 genus Oscillatoria 1 809 482564 Oscillatoria nigro-viridis species 0 1 632 118323 Oscillatoria acuminata 0 species Moorea 0 genus 2 9 1 605 1155738 1155739 1 596 species 0 Moorea producens family 0 Microcoleaceae 1892252 1 1669 4 2 1205 2 1 1133 1 0 genus Trichodesmium 1 1132 1206 Trichodesmium erythraeum 0 species 0 genus 44471 1 534 0 no rank 2642155 1 534 534 1 1173027 Microcoleus sp. PCC 7113 species 0 0 family Gomontiellaceae 1892255 21 3 739 1 Crinalium genus 0 4 2 1 718 241421 Crinalium epipsammum species 0 1 714 241425 1118 23 5 1 9965 order 0 Chroococcales Aphanothecaceae 0 family 9 1 1 3554 1890450 392 2 92682 no rank 0 Halothece genus 0 1 392 2 1 76023 no rank 0 2632878 391 1 1 391 65093 Halothece sp. PCC 7418 0 species 28070 2 1379 0 genus 720 1 2546356 0 species Cyanothece sp. PCC 7424 0 strain 720 1 65393 0 species 2546359 1 659 0 strain Cyanothece sp. PCC 7822 497965 659 1 1 547 263510 genus 0 0 species 1 547 2546360 1 547 43989 Cyanothece sp. ATCC 51142 strain 0 1453359 437 1 0 genus 1 437 713887 Candidatus Atelocyanobacterium thalassa species 0 2 798 2546365 0 genus 2546366 798 2 0 species 350 1 395962 Cyanothece sp. PCC 8802 strain 0 41431 448 1 strain 0 Cyanothece sp. PCC 8801 1890452 2 4 1124 1 0 family Cyanobacteriaceae 0 genus 1 1120 102234 379064 1 1120 0 species Cyanobacterium aponinum family 0 Microcystaceae 1890449 13 4 1 2122 21 3 2109 1 1125 Microcystis 0 genus 0 no rank 1 746 2643300 species 0 Microcystis sp. MC19 1967666 746 1 1126 1 1342 0 species Microcystis aeruginosa 8 7 1 3160 1890464 Chroococcaceae family 0 0 genus Gloeocapsa 102231 431 1 1 2 no rank 0 1 430 2623012 Gloeocapsa sp. PCC 7428 0 species 430 1 1173026 Geminocystis 0 genus 1 2023 3 23 669357 2000 2 2625037 no rank 0 1615909 1126 1 species 0 Geminocystis sp. NIES-3708 Geminocystis sp. NIES-3709 species 0 1 874 1617448 genus 0 698 1 268175 no rank 0 698 1 2648896 0 species Chondrocystis sp. NIES-4102 2005460 698 1 18940213 1 106 655 201174 Actinobacteria phylum 0 0 class Actinobacteria 1760 1 17131358 600 9655 1 398 52018 no rank 0 1 398 1650658 Actinobacteria bacterium IMCC26256 species 0 85013 7912 1 13 7 0 order Frankiales 74712 1 7899 6 84 0 family Frankiaceae 0 genus Frankia 1854 7815 1 140 5 no rank 0 2632575 1 2228 2228 1 298653 Frankia sp. EAN1pec 0 species 298654 2178 1 0 species Frankia inefficax Frankia alni species 0 1 2191 1859 species 0 Frankia casuarinae 106370 1 1078 3507 1 18 12 2039638 Candidatus Nanopelagicales 0 order 0 family 2162846 11 3489 2039639 1251 1 15 4 0 genus Candidatus Nanopelagicus 0 species Candidatus Nanopelagicus hibericus 1884915 1 467 species 0 Candidatus Nanopelagicus abundans 1884916 447 1 Candidatus Nanopelagicus limnes 0 species 1 322 1884634 1 2238 7 28 622681 Candidatus Planktophila 0 genus Candidatus Planktophila vernalis 0 species 373 1 1884907 1 425 1884914 Candidatus Planktophila dulcis 0 species 1884904 266 1 species 0 Candidatus Planktophila sulfonica 1 548 1884905 Candidatus Planktophila versatilis species 0 species 0 Candidatus Planktophila limnetica 573600 1 218 Candidatus Planktophila lacus 0 species 1 380 1884913 order 0 Nakamurellales 1643684 2494 1 20 4 1 2474 3 61 85031 Nakamurellaceae 0 family 53460 2 24 1 2413 genus 0 Nakamurella Nakamurella multipartita 0 species 1 2389 53461 0 no rank 2 1471 1643818 1 1471 6 2 147067 Thermobispora genus 0 Thermobispora bispora species 0 1 1465 2006 43286 1 33 195 85009 Propionibacteriales 0 order Propionibacteriaceae 0 family 28576 1 353 19 31957 Propionibacterium genus 0 4733 1 3 105 1743 3728 1 1744 Propionibacterium freudenreichii species 0 2608905 900 1 0 no rank 671223 900 1 0 species Propionibacterium sp. oral taxon 193 2801844 1 1496 genus 0 Pseudopropionibacterium propionicum species 0 1496 1 1750 genus 0 Acidipropionibacterium 1912215 30 2 1 3134 species 0 Acidipropionibacterium acidipropionici 1748 3104 1 genus 0 2006 1 203133 0 no rank 2006 1 2633994 Propionimicrobium sp. Marseille-P3275 species 0 2006 1 1871034 1800 1 8 2 29404 Microlunatus genus 0 1 1792 29405 Microlunatus phosphovorus 0 species 0 genus Cutibacterium 1912216 1 6879 53 4 33011 890 1 species 0 Cutibacterium granulosum Cutibacterium acnes 0 species 1 3394 1747 33010 2542 1 0 species Cutibacterium avidum 38 5 1 8175 72763 Tessaracoccus 0 genus 2635419 1 2086 no rank 0 0 species Tessaracoccus sp. T2.5-30 1909732 2086 1 Tessaracoccus aquimaris 0 species 2142 1 1332264 1825 1 1610493 Tessaracoccus flavus species 0 0 species Tessaracoccus flavescens 399497 1 2084 Nocardioidaceae 0 family 13 357 1 14515 85015 6 2 1722 1 116071 Micropruina 0 genus Micropruina glycogenica species 0 1 1716 75385 4 48 6761 1 1839 Nocardioides 0 genus no rank 0 2615069 1 2304 196162 2304 1 0 species Nocardioides sp. JS614 0 species Nocardioides sp. 78 2045452 1 2079 450734 2330 1 species 0 Nocardioides dokdonensis 2044 2020 1 14 2 genus 0 Pimelobacter 0 species Pimelobacter simplex 2045 2006 1 genus 0 Kribbella 182639 2 40 2208 1 2168 1 182640 Kribbella flavida species 0 0 genus Aeromicrobium 2040 45 2 1447 1 species 0 Aeromicrobium erythreum 2041 1402 1 207 42 68512 1 85010 Pseudonocardiales order 0 1 68305 859 41 2070 Pseudonocardiaceae family 0 1835 2 13 2855 1 0 genus Saccharopolyspora 1 2842 1836 Saccharopolyspora erythraea 0 species 2029 2 1 2879 1 0 genus Kibdelosporangium 0 species Kibdelosporangium phytohabitans 860235 1 2878 43356 3989 1 14 2 0 genus Kutzneria 43357 1 3975 0 species Kutzneria albida Amycolatopsis 0 genus 1 16576 7 271 1813 1814 1 2453 0 species Amycolatopsis methanolica 0 species Amycolatopsis mediterranei 33910 2959 1 2618356 4656 2 0 no rank species 0 Amycolatopsis sp. BJA-103 1911175 1 2202 1 2454 1896961 Amycolatopsis sp. AA4 0 species 0 species Amycolatopsis japonica 208439 1 1810 Amycolatopsis orientalis species 0 1 4427 31958 3 2 1 1552 142577 Prauserella genus 0 1 1549 530584 Prauserella marina 0 species Actinosynnema 0 genus 8556 1 180 3 40566 0 species Actinosynnema mirum 40567 4156 1 Actinosynnema pretiosum species 0 4220 1 42197 Saccharomonospora genus 0 2 29 1 678 1851 species 0 Saccharomonospora viridis 1852 1 649 0 genus Actinoalloteichus 65496 9269 1 6 200 1 2185 1612552 Actinoalloteichus sp. ADI127-7 0 species species 0 Actinoalloteichus hymeniacidonis 340345 1 1376 1470176 1856 1 0 species Actinoalloteichus hoggarensis 2644606 2 3652 no rank 0 Actinoalloteichus sp. AHMU CJ021 0 species 1 1449 2072503 1612551 1 2203 species 0 Actinoalloteichus sp. GBA129-24 165301 1 2556 9 2 genus 0 Lentzea 2547 1 1586287 Lentzea guizhouensis species 0 13260 1 8 324 1847 Pseudonocardia genus 0 1 1939 240495 Pseudonocardia dioxanivorans 0 species 0 no rank 2619320 10997 6 0 species Pseudonocardia sp. HH130630-07 1690815 1 1995 species 0 Pseudonocardia sp. EC080610-09 1688404 1 1686 Pseudonocardia sp. EC080619-01 species 0 1 1758 1096856 1641402 1841 1 0 species Pseudonocardia sp. HH130629-09 1 2129 445576 Pseudonocardia sp. AL041005-10 0 species Pseudonocardia sp. EC080625-04 0 species 1 1588 1096868 Alloactinosynnema 0 genus 2204 1 2 6 674734 0 no rank 2636053 1 2198 0 species Alloactinosynnema sp. L-07 1653480 1 2198 2 12 3072 1 2071 Saccharothrix genus 0 species 0 Saccharothrix espanaensis 103731 3060 1 Corynebacteriales order 0 163 1116 1 203100 85007 1 1906 4 4 85029 Dietziaceae family 0 genus 0 Dietzia 37914 13 3 1 1902 Dietzia timorensis 0 species 1 758 499555 no rank 0 2617939 1131 1 Dietzia sp. oral taxon 368 species 0 1 1131 712270 85025 31 256 1 45703 family 0 Nocardiaceae 0 genus Nocardia 1817 1 18877 241 7 Nocardia terpenica species 0 1 3232 455432 135487 4191 1 0 species Nocardia cyriacigeorgica 2570 1 37329 Nocardia farcinica 0 species 4159 1 37326 Nocardia brasiliensis species 0 Nocardia seriolae 0 species 2521 1 37332 1963 1 37330 Nocardia nova 0 species Rhodococcus genus 0 26570 1 1070 23 1827 Rhodococcus aetherivorans 0 species 1 1604 191292 0 species Rhodococcus erythropolis 1833 1 1249 Rhodococcus rhodochrous 0 species 1 869 1829 1830 1 1743 species 0 Rhodococcus ruber 1 3105 37919 Rhodococcus opacus species 0 species 0 Rhodococcus qingshengii 334542 1 708 1828 1 1110 species 0 Rhodococcus fascians Rhodococcus hoagii 0 species 1 1379 43767 Rhodococcus jostii species 0 1 1488 132919 103816 1194 1 species 0 Rhodococcus pyridinivorans no rank 0 11051 12 192944 Rhodococcus sp. B7740 0 species 1112 1 1564114 1033922 1 1597 0 species Rhodococcus sp. WB1 0 species Rhodococcus sp. PBTS 2 1653479 1 845 1 1053 935199 Rhodococcus sp. p52 0 species Rhodococcus sp. PBTS 1 0 species 1 1131 1653478 476 1 679318 Rhodococcus sp. WMMA185 species 0 0 species Rhodococcus sp. H-CA8f 1727214 798 1 593 1 1723645 Rhodococcus sp. 008 0 species 914 1 1570939 Rhodococcus sp. 2G species 0 species 0 Rhodococcus sp. YL-1 1045808 1 609 1 1372 1805827 Rhodococcus sp. MTM3W5.2 species 0 551 1 1807790 Rhodococcus sp. BH4 0 species family 0 Gordoniaceae 85026 1 8472 32 9 genus 0 Gordonia 2053 1 8440 170 8 0 species Gordonia terrae 2055 1260 1 no rank 0 2 2153 2657482 337191 1 1096 0 species Gordonia sp. KTR9 2059875 1 1057 0 species Gordonia sp. YC-JH1 Gordonia polyisoprenivorans species 0 1 1512 84595 1 1107 1004901 Gordonia iterans species 0 1262 1 1136941 Gordonia phthalatica species 0 Gordonia bronchialis species 0 976 1 2054 Corynebacteriaceae family 0 1 68277 594 52 1653 1716 1 67683 1748 51 genus 0 Corynebacterium 509 1 571915 Corynebacterium mustelae 0 species Corynebacterium humireducens 0 species 1 1592 1223514 1118 1 1705 Corynebacterium stationis species 0 1 1817 169292 Corynebacterium aurimucosum species 0 1 2231 43771 Corynebacterium urealyticum 0 species Corynebacterium camporealensis 0 species 1 1087 161896 Corynebacterium diphtheriae species 0 1 1042 1717 Corynebacterium crudilactis species 0 617 1 1652495 1277 1 161899 Corynebacterium singulare 0 species 1 581 92706 [Brevibacterium] flavum 0 species 225326 2173 1 species 0 Corynebacterium halotolerans 160386 965 1 0 species Corynebacterium casei 0 species Corynebacterium maris 575200 1 982 0 species Corynebacterium atypicum 191610 927 1 0 species Corynebacterium efficiens 152794 1 1133 0 species Corynebacterium deserti 1408191 1 936 Corynebacterium glyciniphilum 0 species 1 1145 1404244 no rank 0 2624378 1908 2 1026 1 702967 Corynebacterium sp. NML98-0116 0 species 882 1 1487956 Corynebacterium sp. ATCC 6931 0 species 258224 828 1 species 0 Corynebacterium resistens 1186 1 203263 Corynebacterium aquilae species 0 1083 1 136857 Corynebacterium testudinoris species 0 Corynebacterium sphenisci species 0 1 1547 191493 451 1 161879 Corynebacterium kroppenstedtii 0 species Corynebacterium variabile 0 species 1 1618 1727 species 0 Corynebacterium simulans 146827 2234 1 35757 490 1 0 species Corynebacterium cystitidis Corynebacterium pseudotuberculosis species 0 1 2797 1719 Corynebacterium jeikeium species 0 1 2564 38289 1053 1 156978 Corynebacterium imitans 0 species 1014 1 1231000 Corynebacterium lactis species 0 401472 1366 1 species 0 Corynebacterium ureicelerivorans 0 species Corynebacterium striatum 43770 1 3473 1121358 1601 1 species 0 Corynebacterium doosanense 0 species Corynebacterium glaucum 187491 1129 1 2510 1 38305 Corynebacterium vitaeruminis 0 species 0 species Corynebacterium terpenotabidum 89154 1469 1 species 0 Corynebacterium frankenforstense 1230998 2101 1 1 375 35755 Corynebacterium kutscheri species 0 1485 1 349751 Corynebacterium marinum species 0 0 species Corynebacterium ammoniagenes 1697 1 1160 Corynebacterium ulcerans species 0 965 1 65058 0 species Corynebacterium uterequi 1072256 1141 1 1050174 1 660 species 0 Corynebacterium epidermidicanis 2182 1 108486 Corynebacterium falsenii species 0 1 902 28028 Corynebacterium flavescens 0 species Corynebacterium argentoratense species 0 1 633 42817 Corynebacterium callunae 0 species 880 1 1721 1630 1 1718 Corynebacterium glutamicum 0 species 0 species Corynebacterium phocae 161895 1368 1 family 0 Tsukamurellaceae 85028 1 3225 4 29 3196 1 3 21 2060 Tsukamurella genus 0 2061 1131 1 0 species Tsukamurella paurometabola 0 species Tsukamurella tyrosinosolvens 57704 1 2044 482 2 697024 0 no rank 1 482 11 2 1847725 Lawsonella genus 0 1528099 471 1 0 species Lawsonella clevelandensis 7 3 1 828 316606 Segniliparaceae family 0 Segniliparus genus 0 5 2 1 821 286801 0 species Segniliparus rotundus 286802 1 816 Mycobacteriaceae family 0 1 73091 365 57 1762 genus 0 Hoyosella 697025 1 761 2 5 639313 756 1 species 0 Hoyosella subflava 1763 1 40347 3245 34 genus 0 Mycobacterium 0 species Mycobacterium dioxanotrophicus 482462 1 1619 species 0 Mycobacterium ulcerans 1809 1 1057 0 species Mycobacterium leprae 1769 217 1 species group 0 4 3460 77643 species 0 Mycobacterium canettii 78331 807 1 3 1057 1 2653 1773 Mycobacterium tuberculosis 0 species 1 776 33894 Mycobacterium africanum biotype 0 820 1 1765 Mycobacterium bovis biotype 0 120793 8150 8 species group 0 4 352 1806 1 1767 Mycobacterium intracellulare species 0 subspecies 0 Mycobacterium yongonense 1203599 1 412 35617 1 217 0 subspecies Mycobacterium indicus pranii subspecies 0 Mycobacterium chimaera 222805 1 825 1138383 1 311 0 species Mycobacterium paraintracellulare Mycobacterium colombiense 0 species 1980 1 339268 1764 1 2892 species 0 Mycobacterium avium Mycobacterium marseillense 0 species 1161 1 701042 Mycobacterium marinum species 0 1382 1 1781 no rank 0 2642494 16714 13 1 1587 1570328 Mycobacterium sp. NRRL B-3805 0 species 0 species Mycobacterium sp. QIA-37 1561223 1 897 962 1 189918 Mycobacterium sp. KMS species 0 1 2185 1879023 Mycobacterium sp. djl-10 0 species 914 1 164756 Mycobacterium sp. MCS species 0 Mycobacterium sp. JLS 0 species 1288 1 164757 1545728 1 1280 species 0 Mycobacterium sp. EPa45 1682113 1 1815 species 0 Mycobacterium sp. YC-RL4 2051552 1504 1 0 species Mycobacterium sp. PYR15 1447 1 1920667 Mycobacterium sp. WY10 0 species 1 270 1168287 Mycobacterium sp. MOTT36Y 0 species 1273687 1 1227 species 0 Mycobacterium sp. VKM Ac-1817D 1 1338 212767 Mycobacterium sp. JS623 0 species Mycobacterium liflandii 0 species 1 1071 261524 1768 1472 1 species 0 Mycobacterium kansasii species 0 Mycobacterium haemophilum 29311 593 1 0 species group 2249310 1367 1 species 0 Mycobacterium shigaense 722731 1367 1 670516 5 6422 genus 0 1520670 1 1042 species 0 Mycobacterium stephanolepidis Mycobacterium chelonae species 0 730 1 1774 83262 868 1 species 0 Mycobacterium immunogenum Mycobacterium abscessus 0 species 1 2639 36809 1 1143 1578165 Mycobacterium saopaulense species 0 13 22133 1866885 genus 0 1810 1764 1 0 species Mycobacterium vaccae 1797 1658 1 species 0 Mycobacterium thermoresistibile 1469 1 1804 Mycobacterium gilvum species 0 species 0 Mycobacterium litorale 758802 1431 1 1 1145 36814 Mycobacterium rhodesiae species 0 0 species Mycobacterium chubuense 1800 1480 1 2079 1 1791 Mycobacterium aurum 0 species species 0 Mycobacterium fortuitum 1766 1422 1 1771 1 2348 0 species Mycobacterium phlei 2209 1 134601 Mycobacterium goodii species 0 Mycobacterium smegmatis species 0 2018 1 1772 110539 1 1523 0 species Mycobacterium vanbaalenii 1795 1587 1 0 species Mycobacterium neoaurum 2 3063 1073531 0 genus 0 species Mycobacterium sinense 875328 1 1573 Mycobacterium terrae species 0 1 1490 1788 Catenulisporales 0 order 4 14 4161 1 414714 Catenulisporaceae family 0 3 22 1 4147 414877 414878 28 2 1 4125 0 genus Catenulispora 4097 1 304895 Catenulispora acidiphila species 0 order 0 3 412 1643683 Acidothermaceae 0 family 4 3 412 1 85032 Acidothermus genus 0 2 5 408 1 28048 Acidothermus cellulolyticus species 0 1 403 28049 6 8 1 7581 1643682 Geodermatophilales 0 order 7 112 7575 1 85030 Geodermatophilaceae 0 family 137 2 3339 1 88138 Modestobacter genus 0 1 3202 477641 Modestobacter marinus species 0 genus 0 Blastococcus 38501 1 1634 2 26 1608 1 138336 Blastococcus saxobsidens species 0 Geodermatophilus 0 genus 1 2490 2 27 1860 1 2463 1861 Geodermatophilus obscurus species 0 1 4 2474 1 622452 Kineosporiales 0 order 70 3 1 2473 83778 Kineosporiaceae family 0 14 2 2403 1 33981 Kineococcus genus 0 species 0 Kineococcus radiotolerans 131568 2389 1 2037 20 58 1 36101 0 order Actinomycetales 2049 36043 1 5641 19 family 0 Actinomycetaceae 2 2 1 1131 28263 Arcanobacterium 0 genus Arcanobacterium haemolyticum 0 species 1 1129 28264 2 53 3422 1 2050 Mobiluncus 0 genus Mobiluncus curtisii species 0 3369 1 2051 genus 0 2529408 3006 1 Actinomyces meyeri species 0 3006 1 52773 Actinotignum genus 0 836 1 4 2 1653174 Actinotignum schaalii 0 species 832 1 59505 1069494 16 2 3173 1 genus 0 Trueperella species 0 Trueperella pyogenes 1661 3157 1 1654 18834 1 9 303 0 genus Actinomyces 0 species Actinomyces oris 544580 2350 1 1912795 346 1 species 0 Actinomyces sp. VUL4_3 species 0 Actinomyces pacaensis 1852377 1 5377 1 1168 1960083 Actinomyces gaoshouyii 0 species 111015 1 2651 species 0 Actinomyces radicidentis no rank 0 2609248 3 6639 712122 1 2727 0 species Actinomyces sp. oral taxon 414 1851395 1687 1 0 species Actinomyces sp. Chiba101 2081702 1 2225 0 species Actinomyces sp. oral taxon 897 order 0 Streptomycetales 85011 82 445 1 196979 Streptomycetaceae 0 family 81 1197 196534 1 2062 2063 5 116 12940 1 0 genus Kitasatospora no rank 0 3407 1 2633591 2018025 3407 1 species 0 Kitasatospora sp. MMS16-BH015 species 0 Kitasatospora setae 2066 4102 1 species 0 Kitasatospora albolonga 68173 1 2530 Kitasatospora aureofaciens species 0 1 2785 1894 0 genus Streptomyces 1883 75 5969 1 182397 Streptomyces lividans 0 species 1 2300 1916 1950 1498 1 0 species Streptomyces peucetius Streptomyces bingchenggensis species 0 3409 1 379067 68570 2551 1 species 0 Streptomyces albulus 0 species Streptomyces chartreusis 1969 2419 1 1 2125 1038928 Streptomyces xinghaiensis 0 species 0 species Streptomyces fulvissimus 68202 1 1902 species 0 Streptomyces lydicus 47763 1 5911 2497 1 1437453 Streptomyces leeuwenhoekii 0 species 1 5100 1888 Streptomyces albus 0 species 193462 1 1892 species 0 Streptomyces niveus 1930 2639 1 0 species Streptomyces scabiei 0 species Streptomyces lavendulae 1914 1 2107 Streptomyces sp. XZHG99 0 species 1 1636 2049881 Streptomyces sp. S10(2016) species 0 1 2142 1783515 5702 1 1912 Streptomyces hygroscopicus species 0 1 2743 146923 Streptomyces parvulus species 0 68280 1 2525 0 species Streptomyces violaceusniger species 0 Streptomyces alboflavus 67267 1 2356 Streptomyces alfalfae species 0 1 1941 1642299 0 species Streptomyces noursei 1971 1 2188 0 species Streptomyces reticuli 1926 2183 1 Streptomyces avermitilis 0 species 1 2014 33903 2190 1 38300 Streptomyces pristinaespiralis species 0 2029 1 1616117 Streptomyces formicae 0 species 68249 4633 1 0 species Streptomyces pactum 1 2327 408015 Streptomyces xiamenensis species 0 3106 1 29303 Streptomyces cattleya 0 species Streptomyces rubrolavendulae species 0 1521 1 285473 species 0 Streptomyces violaceoruber 1935 1 2860 0 species group 629295 3606 2 1949 1 1482596 species subgroup 0 species 0 Streptomyces griseus 1911 1 1949 species subgroup 0 1657 1 1482558 1 1657 1908 Streptomyces globisporus species 0 2447 1 92644 Streptomyces malaysiensis species 0 Streptomyces glaucescens 0 species 1911 1 1907 1 2042 68192 Streptomyces cyaneogriseus species 0 Streptomyces collinus 0 species 1 2329 42684 2757 1 75293 Streptomyces autolyticus 0 species 0 species Streptomyces vietnamensis 362257 1 2041 1957 1 553510 Streptomyces gilvosporeus species 0 54571 1 3721 species 0 Streptomyces venezuelae Streptomyces pluripotens 0 species 1 1444 1355015 Streptomyces pratensis 0 species 1213 1 1169025 Streptomyces lincolnensis species 0 1 3311 1915 species 0 Streptomyces puniciscabiei 164348 2348 1 1477431 4587 2 species group 0 species 0 Streptomyces coelicolor 1902 2687 1 species 0 Streptomyces sampsonii 42239 1900 1 24 51225 2593676 0 no rank 1875 1 1649184 Streptomyces sp. CFMR 7 0 species 862751 1 1416 species 0 Streptomyces sp. SirexAA-E 1 2065 1961713 Streptomyces sp. MOE7 species 0 1795 1 1837283 Streptomyces sp. S8 species 0 0 species Streptomyces sp. 3211 1964449 2349 1 species 0 Streptomyces sp. SAT1 1849967 2039 1 444103 1 2129 0 species Streptomyces sp. CNQ-509 1725411 1 2697 0 species Streptomyces sp. CdTB01 Streptomyces sp. 4F 0 species 1766 1 1751294 Streptomyces sp. P3 0 species 1 2299 2135430 1 2447 1812480 Streptomyces sp. fd1-xmd species 0 1661694 1879 1 species 0 Streptomyces sp. Tue 6075 1 1656 234612 Streptomyces sp. TN58 0 species 0 species Streptomyces sp. WAC00288 2094021 1 1603 1972846 1971 1 species 0 Streptomyces sp. Sge12 1 3312 1495638 Streptomyces sp. M56 species 0 0 species Streptomyces sp. CLI2509 1984801 1 1437 2360 1 2059884 Streptomyces sp. CMB-StM0423 species 0 2220 1 206662 Streptomyces sp. FR-008 species 0 Streptomyces sp. RTd22 species 0 2988 1 1841249 1 2637 1561022 Streptomyces sp. CCM_MD2014 0 species 0 species Streptomyces sp. PAMC 26508 1265601 1384 1 1 2357 465541 Streptomyces sp. Mg1 species 0 0 species Streptomyces sp. 769 1262452 1 2544 2576 1 1940 Streptomyces albireticuli species 0 0 species Streptomyces griseochromogenes 68214 2529 1 Streptomyces clavuligerus species 0 2039 1 1901 Streptomyces ambofaciens 0 species 1 1899 1889 622450 1273 3 0 order 0 family Actinopolysporaceae 622451 1273 1 9 3 1849 2 15 1 1264 0 genus Actinopolyspora 1249 1 414996 Actinopolyspora erythraea 0 species order 0 Micrococcales 85006 145 1530 1 196773 family 0 Jonesiaceae 85022 1 432 1 3 2 2 431 1 43673 Jonesia genus 0 Jonesia denitrificans species 0 1 429 43674 2 81 577468 0 no rank Tropheryma genus 0 81 1 4 2 2038 0 species Tropheryma whipplei 2039 77 1 Sanguibacteraceae family 0 1431 1 15 3 145360 1416 1 2 9 60919 Sanguibacter 0 genus 60920 1407 1 0 species Sanguibacter keddieii 1 5469 7 70 145357 Dermacoccaceae 0 family Kytococcus 0 genus 39 2 1 1982 57499 0 species Kytococcus sedentarius 1276 1 1943 57495 1199 1 4 2 genus 0 Dermacoccus 0 species Dermacoccus nishinomiyaensis 1274 1195 1 1 2218 2 18 745364 Luteipulveratus 0 genus 571913 1 2200 0 species Luteipulveratus mongoliensis 85021 1 18395 71 9 family 0 Intrasporangiaceae Janibacter 0 genus 7561 1 2 17 53457 1 7544 857417 Janibacter indicus species 0 Serinicoccus 0 genus 7122 1 2 46 265976 Serinicoccus sp. JLT9 0 species 1 7076 1758689 53357 2 3 1147 1 0 genus Intrasporangium 1 1144 53358 Intrasporangium calvum 0 species genus 0 Arsenicicoccus 267408 2 45 2494 1 2449 1 2663846 no rank 0 0 species Arsenicicoccus sp. oral taxon 190 1658671 1 2449 Microbacteriaceae 0 family 1 42412 45 437 85023 0 no rank 462 2 1655488 2 462 1655489 clade 0 0 genus 2 462 529883 Rhodoluna lacicola species 0 267 1 529884 Candidatus Rhodoluna planktonica 0 species 1 195 535712 268 1 1705353 0 genus 708131 268 1 0 species Aurantimicrobium minutum Cryobacterium 0 genus 3997 1 46 3 69578 2173 1 670052 Cryobacterium arcticum species 0 2649013 1 1778 0 no rank 1778 1 1978566 Cryobacterium sp. LW097 0 species Microterricola 0 genus 1640 1 5 2 518733 1635 1 412690 Microterricola viridarii 0 species 1434032 361 1 genus 0 1159327 1 361 0 species Pontimonas salivibrio Microbacterium 0 genus 330 14 16417 1 33882 0 species Microbacterium chocolatum 84292 1 861 935 1 2033 Microbacterium testaceum species 0 species 0 Microbacterium aurum 36805 1431 1 Microbacterium hominis species 0 1566 1 162426 species 0 Microbacterium paludicola 300019 1 1165 8 10129 2609290 no rank 0 1714373 1525 1 species 0 Microbacterium sp. No. 7 species 0 Microbacterium sp. CGR1 1696072 1018 1 Microbacterium sp. str. 'China' 0 species 1451 1 2103230 1916917 1023 1 0 species Microbacterium sp. 1.5R Microbacterium sp. BH-3-3-3 0 species 1368 1 1906742 0 species Microbacterium sp. PAMC 28756 1795053 1 1818 Microbacterium sp. TPU 3598 0 species 1004 1 1938334 0 species Microbacterium sp. XT11 367477 922 1 genus 0 Cnuibacter 1759331 1 1056 2 7 1619308 1 1049 species 0 Cnuibacter physcomitrellae genus 0 337004 1 728 279828 1 728 0 species Microcella alkaliphila 1 5354 6 391 1573 Clavibacter 0 genus 0 species Clavibacter michiganensis 28447 1 4963 5 1232 Clavibacter insidiosus subspecies 0 1 797 33014 Clavibacter sepedonicus 0 subspecies 1 1128 31964 31963 1 932 subspecies 0 Clavibacter nebraskensis 1874630 1 874 0 subspecies Clavibacter capsici Agromyces genus 0 1 1950 2 27 33877 Agromyces aureus species 0 1923 1 453304 Curtobacterium 0 genus 1 3714 4 100 2034 Curtobacterium pusillum species 0 1 936 69373 0 no rank 2 2678 257496 Curtobacterium sp. BH-2-1-1 species 0 1444 1 1905847 Curtobacterium sp. MR_MD2014 0 species 1 1234 1561023 110932 20 2 1 2909 genus 0 Leifsonia 0 species Leifsonia xyli 1575 2889 1 33886 1 1381 62 3 0 genus Rathayibacter 145458 507 1 0 species Rathayibacter toxicus species 0 Rathayibacter tritici 33888 1 812 1 1738 447237 genus 0 2626248 1738 1 0 no rank 1795630 1 1738 species 0 Frondihabitans sp. PAMC 28766 1 7038 6 26 85016 Cellulomonadaceae family 0 genus 0 Cellulomonas 1707 7012 1 167 5 1708 1706 1 0 species Cellulomonas fimi 1711 1773 1 0 species Cellulomonas flavigena 11 1 2140 0 species Cellulomonas gilvus 1226 1 2620175 no rank 0 Cellulomonas sp. PSBB021 species 0 1 1226 2003551 0 family Brevibacteriaceae 85019 3 19 1 2292 2273 1 15 2 1696 Brevibacterium genus 0 1703 2258 1 species 0 Brevibacterium linens 1 91909 40 2791 1268 Micrococcaceae family 0 1165 1 2078575 0 genus Arthrobacter sp. IHBB 11108 0 species 1165 1 1618207 Arthrobacter 0 genus 1 29754 1038 15 1663 no rank 0 12 22972 235627 2020486 1703 1 0 species Arthrobacter sp. YN 290399 1977 1 0 species Arthrobacter sp. FB24 0 species Arthrobacter sp. U41 1849032 1978 1 1806905 1 1368 0 species Arthrobacter sp. ZXY-2 species 0 Arthrobacter sp. LS16 1690248 1 3466 Arthrobacter sp. PGP41 species 0 1 1704 2079227 1771959 1478 1 species 0 Arthrobacter sp. ATCC 21022 1 2459 1652545 Arthrobacter sp. YC-RL1 species 0 Arthrobacter sp. PAMC 25486 species 0 2208 1 1494608 species 0 Arthrobacter sp. ERGS1:01 1704044 2027 1 species 0 Arthrobacter sp. Rue61a 1118963 928 1 Arthrobacter sp. QXT-31 species 0 1676 1 1357915 3172 1 656366 Arthrobacter alpinus 0 species species 0 Arthrobacter crystallopoietes 37928 1 2572 0 genus Renibacterium 1645 2 2 448 1 0 species Renibacterium salmoninarum 1646 1 446 1742993 4 72 5679 1 0 genus Pseudarthrobacter 0 species Pseudarthrobacter phenanthrenivorans 361575 1 1422 Pseudarthrobacter sulfonivorans species 0 2097 1 121292 0 species Pseudarthrobacter chlorophenolicus 85085 2088 1 1868332 2 57 12857 1 genus 0 Neomicrococcus Neomicrococcus aestuarii 0 species 1 12800 556325 Glutamicibacter genus 0 21 2 1 2488 1742989 2467 1 256701 Glutamicibacter arilaitensis species 0 Micrococcus genus 0 1 2349 14 2 1269 1270 1 2335 0 species Micrococcus luteus 4962 1 80 4 57493 Kocuria genus 0 Kocuria palustris 0 species 1243 1 71999 0 species Kocuria rhizophila 72000 1 1938 446860 1701 1 species 0 Kocuria flava genus 0 Sinomonas 596707 2 14 1605 1 1591 1 37927 Sinomonas atrocyanea species 0 genus 0 Rothia 32207 1 26546 14 3 2047 1 1367 0 species Rothia dentocariosa 43675 1 25165 0 species Rothia mucilaginosa Paenarthrobacter 0 genus 10 2 1 1265 1742992 43663 1 1255 0 species Paenarthrobacter aurescens 85018 2 3 849 1 family 0 Dermatophilaceae genus 0 Dermatophilus 1862 1 847 2 1 Dermatophilus congolensis species 0 1 846 1863 125316 2 3 1 1272 family 0 Beutenbergiaceae 2 52 1270 1 84756 Beutenbergia genus 0 1 1218 84757 Beutenbergia cavernae species 0 0 family Dermabacteraceae 85020 85 11 1 14104 genus 0 Brachybacterium 43668 1 12559 6 149 species 0 Brachybacterium sp. VR2415 2017485 1 2454 0 no rank 2194 1 2623841 0 species Brachybacterium sp. P6-10-X1 1903186 1 2194 Brachybacterium sp. VM2412 0 species 1 2277 2017484 1 2337 1331682 Brachybacterium ginsengisoli species 0 43669 3148 1 0 species Brachybacterium faecium 0 genus Dermabacter 36739 678 1 2 2 0 species Dermabacter vaginalis 1630135 676 1 3 2 1 782 472568 Devriesea genus 0 species 0 Devriesea agamarum 472569 779 1 1 9559 9 80 85017 Promicromonosporaceae family 0 1 3003 3 25 157920 Cellulosimicrobium genus 0 1234 1 2624466 no rank 0 0 species Cellulosimicrobium sp. TH-20 1980001 1234 1 1710 1 1744 species 0 Cellulosimicrobium cellulans Isoptericola 0 genus 3 53 1 4010 254250 1 1821 139208 Isoptericola variabilis 0 species species 0 Isoptericola dokdonensis 372663 2136 1 Xylanimonas genus 0 16 2 2466 1 186188 1 2450 186189 Xylanimonas cellulosilytica species 0 order 0 Bifidobacteriales 85004 26 154 1 16284630 1 16284476 11962 25 31953 Bifidobacteriaceae family 0 Parascardovia 0 genus 1 2 2389 1 196082 0 species Parascardovia denticolens 78258 1 2388 2701 2 1 2123 1 genus 0 Gardnerella 2702 1 2122 species 0 Gardnerella vaginalis genus 0 1 1542 196081 0 species Scardovia inopinata 78259 1 1542 1 16266460 19 5793 1678 Bifidobacterium 0 genus species 0 Bifidobacterium breve 1685 442360 1 species 0 Bifidobacterium longum 216816 1 3503515 species 0 Bifidobacterium indicum 1691 1603 1 1 46776 1689 Bifidobacterium dentium 0 species 6190 1 28025 Bifidobacterium animalis 0 species 33905 10556 1 0 species Bifidobacterium thermophilum 0 species Bifidobacterium bifidum 1681 609686 1 1680 2205056 1 0 species Bifidobacterium adolescentis 1686 2441325 1 2 730762 0 species Bifidobacterium catenulatum 1710563 1 630129 Bifidobacterium kashiwanohense subspecies 0 0 species Bifidobacterium scardovii 158787 1 14377 Bifidobacterium choerinum species 0 1 4067 35760 species 0 Bifidobacterium angulatum 1683 1 101406 Bifidobacterium asteroides 0 species 2117 1 1684 species 0 Bifidobacterium coryneforme 1687 1534 1 1694 10329 1 0 species Bifidobacterium pseudolongum Bifidobacterium actinocoloniiforme species 0 2142 1 638619 0 species Bifidobacterium pseudocatenulatum 28026 1 6857628 4 13 1 2440 85014 Glycomycetales 0 order 0 family Glycomycetaceae 85034 25 3 1 2427 2 19 1 2402 283810 Stackebrandtia 0 genus Stackebrandtia nassauensis species 0 2383 1 283811 Streptosporangiales 0 order 16 111 1 21506 85012 Nocardiopsaceae family 0 7864 1 7 122 83676 2013 84 4 6654 1 0 genus Nocardiopsis 2231 1 280236 Nocardiopsis gilva species 0 Nocardiopsis dassonvillei species 0 1 2924 2014 0 species Nocardiopsis alba 53437 1 1415 0 genus Thermobifida 83677 2 10 1088 1 species 0 Thermobifida fusca 2021 1078 1 3815 1 3 26 2012 Thermomonosporaceae family 0 2019 2 91 1 3789 genus 0 Thermomonospora Thermomonospora curvata species 0 3698 1 2020 54 5 1 9716 2004 Streptosporangiaceae 0 family genus 0 Nonomuraea 83681 1 6659 17 2 2593643 1 6642 no rank 0 species 0 Nonomuraea sp. ATCC 55076 1909395 6642 1 Streptosporangium genus 0 1 3003 2 22 2000 Streptosporangium roseum species 0 1 2981 2001 Micromonosporales order 0 20 56 36693 1 85008 family 0 Micromonosporaceae 28056 19 565 36637 1 3 32 1 3322 168694 Salinispora 0 genus Salinispora arenicola species 0 1705 1 168697 0 species Salinispora tropica 168695 1585 1 216 4 8093 1 1873 Micromonospora genus 0 0 no rank 2617518 3027 1 648999 1 3027 0 species Micromonospora sp. L5 1003110 2210 1 0 species Verrucosispora maris 2640 1 47850 Micromonospora aurantiaca species 0 673534 83 4 1 8836 0 genus Plantactinospora no rank 0 2631981 8753 3 2024580 3025 1 0 species Plantactinospora sp. KBS50 2799 1 2071627 Plantactinospora sp. BB1 species 0 2108470 1 2929 species 0 Plantactinospora sp. BC1 1865 1 15818 330 6 genus 0 Actinoplanes 2626549 9372 3 no rank 0 Actinoplanes sp. N902-109 species 0 3510 1 649831 1 2931 2033844 Actinoplanes sp. SE50 species 0 Actinoplanes sp. SE50/110 species 0 1 2931 134676 species 0 Actinoplanes missouriensis 1866 1 3235 0 species Actinoplanes friuliensis 196914 2881 1 1 3 84593 Verrucosispora 0 genus 1497346 10 5 2217 1 0 class Thermoleophilia Solirubrobacterales 0 order 2207 1 58 4 588673 320583 3 9 2149 1 family 0 Conexibacteraceae Conexibacter genus 0 2 46 2140 1 191494 1 2094 191495 Conexibacter woesei species 0 no rank 0 1752188 1061 4 1848755 1 299 0 species Actinobacteria bacterium IMCC26077 Actinobacteria bacterium IMCC19121 species 0 1 340 1848754 species 0 Actinobacteria bacterium IMCC26103 1848756 1 254 1848255 1 168 0 species Actinobacteria bacterium IMCC25003 84992 7 2 1 1698 class 0 Acidimicrobiia 52 6 1 1696 84993 Acidimicrobiales order 0 2448023 1323 2 family 0 682522 1 1323 23 2 genus 0 Ilumatobacter Ilumatobacter coccineus species 0 1300 1 467094 3 5 321 1 84994 Acidimicrobiaceae 0 family Acidimicrobium genus 0 3 2 1 316 53634 Acidimicrobium ferrooxidans species 0 1 313 53635 1 2655 6 46 84995 Rubrobacteria class 0 0 order Rubrobacterales 84996 94 5 1 2609 Rubrobacteraceae family 0 1 2515 4 39 84997 Rubrobacter 0 genus 2476 1 3 82 42255 Rubrobacter xylanophilus species 0 1722 1 49319 42256 672 1 0 species Rubrobacter radiotolerans class 0 Coriobacteriia 84998 1314 32 1801118 1 84999 14 791 1685170 1 order 0 Coriobacteriales 1643824 657 7 31750 1 family 0 Atopobiaceae genus 0 Atopobium 1380 5 1 2767353 1 2143 0 genus Atopobium parvulum species 0 2143 1 1382 0 genus Olsenella 133925 232 4 28945 1 1 4714 2638792 0 no rank 1 4714 712411 Olsenella sp. oral taxon 807 species 0 species 0 Olsenella uli 133926 1 9327 Olsenella sp. Marseille-P2300 0 species 1 14672 1805478 family 0 Coriobacteriaceae 84107 1652629 1 6 2061 no rank 0 1 4790 84113 species 0 Coriobacteriaceae bacterium 68-1-3 1531429 1 4790 130 2 1639818 1 102106 Collinsella genus 0 Collinsella aerofaciens species 0 1 1639688 74426 Coriobacterium genus 0 14 2 5960 1 33870 Coriobacterium glomerans 0 species 5946 1 33871 1643822 17 1072 1 114634 0 order Eggerthellales 1 113562 16 9113 1643826 Eggerthellaceae family 0 1 36533 135 3 84111 Eggerthella 0 genus 0 no rank 2648737 1 4281 502558 1 4281 species 0 Eggerthella sp. YY7918 1 32117 84112 Eggerthella lenta species 0 genus 0 Adlercreutzia 447020 1 26603 11 2 446660 1 26592 0 species Adlercreutzia equolifaciens 1 5213 5 2 79603 Denitrobacterium 0 genus Denitrobacterium detoxificans 0 species 1 5208 79604 Phoenicibacter 0 genus 1 7201 19 2 1981050 1944646 1 7182 0 species Phoenicibacter massiliensis 0 genus Gordonibacter 644652 20590 1 100 3 1841863 10349 1 0 species Gordonibacter massiliensis 0 species Gordonibacter urolithinfaciens 1335613 10141 1 1 920 84162 genus 0 84163 920 1 0 species Cryptobacterium curtum genus 0 Slackia 84108 51 2 7389 1 84110 7338 1 species 0 Slackia heliotrinireducens no rank 0 1859062 637 2 0 genus Thermobaculum 262406 1 637 130 2 species 0 Thermobaculum terrenum 166501 1 507 0 phylum Chloroflexi 200795 22 45 1 23410 0 class Caldilineae 475962 5 4 1 1993 1 1989 4 9 475963 Caldilineales order 0 475964 3 7 1 1980 family 0 Caldilineaceae 233191 1 1973 15 2 0 genus Caldilinea Caldilinea aerophila 0 species 1 1958 133453 32061 10 26 1 5223 class 0 Chloroflexia order 0 Chloroflexales 32064 45 9 1 5197 1508595 2590 4 0 suborder Roseiflexaceae family 0 2590 1 4 61 1508635 0 genus Roseiflexus 120961 1 2529 5 3 120962 1278 1 0 species Roseiflexus castenholzii no rank 0 2609473 1 1246 357808 1246 1 0 species Roseiflexus sp. RS-1 0 suborder 2562 4 1508594 1106 2562 4 family 0 4 144 1 2562 1107 Chloroflexus 0 genus 1108 780 2 1 1560 species 0 Chloroflexus aurantiacus 1 780 480224 Chloroflexus sp. Y-400-fl 0 strain 152260 858 1 0 species Chloroflexus aggregans Anaerolineae class 0 1 6021 7 10 292625 6011 1 6 7 292629 Anaerolineales order 0 family 0 Anaerolineaceae 292628 6004 1 16 5 915 1 2019482 genus 0 1986204 1 915 species 0 Brevefilum fermentans 233189 1 1564 2 3 genus 0 Anaerolinea Anaerolinea thermophila 0 species 1 1561 167964 1 3509 1324991 no rank 0 3509 1 1889813 Anaerolineaceae bacterium oral taxon 439 species 0 class 0 Ardenticatenia 1382928 53 5 1 4196 0 order Ardenticatenales 1382929 21 4 1 4143 1382930 25 3 1 4122 0 family Ardenticatenaceae Candidatus Promineofilum 0 genus 12 2 1 4097 1988031 Candidatus Promineofilum breve 0 species 1 4085 1806508 301297 1 3909 9 6 class 0 Dehalococcoidia 1 2078 5 1 1202465 Dehalococcoidales order 0 4 8 2077 1 1202464 Dehalococcoidaceae 0 family 6 3 1 2069 61434 Dehalococcoides genus 0 237581 1 444 no rank 0 1 444 1522671 Dehalococcoides sp. UCH007 species 0 species 0 Dehalococcoides mccartyi 61435 1619 1 genus 0 Dehalogenimonas 670486 3 3 1825 1 Dehalogenimonas formicexedens species 0 1 1065 1839801 552810 1 757 species 0 Dehalogenimonas lykanthroporepellens 189775 19 8 2046 1 class 0 Thermomicrobia 4 1485 85000 subclass 0 Sphaerobacterales 0 order 4 45 1485 1 85001 suborder 0 255728 1440 3 3 23 1440 1 85002 Sphaerobacteraceae 0 family 2056 1 1417 2 33 genus 0 Sphaerobacter 0 species Sphaerobacter thermophilus 2057 1384 1 189776 5 3 1 542 0 order Thermomicrobiales 537 1 44 2 189777 Thermomicrobiaceae 0 family 1 493 499 0 genus Thermomicrobium roseum 0 species 493 1 500 1297 36 45599 0 phylum 45599 1 336 36 188787 Deinococci class 0 0 order Deinococcales 118964 15 375 29984 1 14 187 1 29609 183710 Deinococcaceae 0 family Deinococcus 0 genus 13 337 29422 1 1298 1309411 2602 1 0 species Deinococcus soli Cha et al. 2016 3772 1 55148 Deinococcus proteolyticus 0 species 0 species Deinococcus swuensis 1182571 3206 1 species 0 Deinococcus deserti 310783 1 1895 2887 1 1768108 Deinococcus actinosclerus 0 species 1856 1 309887 Deinococcus maricopensis species 0 1 1592 432329 Deinococcus peraridilitoris species 0 1872 1 68909 Deinococcus geothermalis species 0 0 species Deinococcus radiodurans 1299 2306 1 no rank 0 2623546 1 2278 Deinococcus sp. NW-56 0 species 1 2278 2080419 2894 1 502394 Deinococcus gobiensis species 0 1 1925 1182568 Deinococcus puniceus species 0 3 1334 2762275 order 0 332247 29 3 1334 1 family 0 Trueperaceae 332248 1 1305 2 19 genus 0 Truepera Truepera radiovictrix 0 species 1 1286 332249 68933 206 17 1 13945 0 order Thermales 13739 1 99 16 188786 Thermaceae 0 family 208447 4 2 1 2324 genus 0 Oceanithermus 187137 2320 1 species 0 Oceanithermus profundus 3856 1 39 3 65551 Meiothermus genus 0 0 species Meiothermus silvanus 52022 1 1717 0 species Meiothermus ruber 277 2100 1 Thermus genus 0 6401 1 213 8 270 Thermus aquaticus species 0 960 1 271 species 0 Thermus thermophilus 274 1 1747 978 1 2619321 no rank 0 species 0 Thermus sp. CCB_US3_UF1 1111069 978 1 798 1 456163 Thermus parvatiensis 0 species 0 species Thermus oshimai 56957 1 631 457 1 56956 Thermus brockianus 0 species 0 species Thermus scotoductus 37636 1 617 1 1059 3 2 186191 Marinithermus genus 0 Marinithermus hydrothermalis species 0 1056 1 186192 0 phylum 67819 3 864 1663419 864 3 class 0 1663425 864 3 0 order 0 family Fimbriimonadaceae 1663426 1 864 4 3 Fimbriimonas genus 0 2 2 860 1 1005038 Fimbriimonas ginsengisoli species 0 1 858 1005039 Firmicutes phylum 0 728 529 1 16747656 1239 Bacilli 0 class 1 1355797 433 430 91061 Bacillales order 0 268 1143 449686 1 1385 0 no rank 539002 9 8046 2850 2 539738 0 no rank Gemella 0 genus 2850 1 2 2 1378 2624949 2848 1 0 no rank Gemella sp. oral taxon 928 species 0 1 2848 1785995 0 no rank 5196 7 539742 7 175 5196 1 33986 Exiguobacterium genus 0 0 no rank 4 3360 2644629 Exiguobacterium sp. MH3 0 species 1 710 1399115 1 828 1224749 Exiguobacterium sp. ZWU0009 0 species Exiguobacterium sp. U13-1 species 0 1 840 1849031 Exiguobacterium sp. AT1b 0 species 982 1 360911 species 0 Exiguobacterium sibiricum 332410 914 1 Exiguobacterium antarcticum 0 species 747 1 132920 9 60 12795 1 186820 Listeriaceae family 0 0 genus Brochothrix 2755 7 2 1572 1 0 species Brochothrix thermosphacta 2756 1 1565 genus 0 Listeria 1637 6 125 11163 1 Listeria welshimeri species 0 1 1797 1643 species 0 Listeria seeligeri 1640 1476 1 1 2192 1638 Listeria ivanovii species 0 Listeria monocytogenes 0 species 1 4217 1639 1356 1 1642 Listeria innocua species 0 186818 28293 1 26 135 0 family Planococcaceae 1 6605 5 40 1569 Sporosarcina 0 genus 0 no rank 2239 2 2647733 1930546 1064 1 species 0 Sporosarcina sp. P37 Sporosarcina sp. P33 0 species 1175 1 1930764 1571 3173 1 species 0 Sporosarcina ureae 1476 1 1153 0 species Sporosarcina psychrophila 1372 1 12930 206 12 0 genus Planococcus 0 species Planococcus faecalis 1598147 1 1018 1 1093 1374 Planococcus kocurii 0 species 1215089 1087 1 0 species Planococcus halocryophilus species 0 Planococcus maritimus 192421 1 2490 Planococcus sp. L10.15 0 species 774 1 1302659 0 species Planococcus antarcticus 161360 1 1028 Planococcus donghaensis 0 species 1213 1 414778 Planococcus plakortidis species 0 838 1 1038856 1 1186 200991 Planococcus rifietoensis species 0 1997 2 2662419 0 no rank Planococcus sp. PAMC 21323 0 species 1 744 1526927 2058136 1253 1 0 species Planococcus sp. MB-3u-03 1766 1 157226 0 genus 1508404 1766 1 species 0 Jeotgalibacillus malaysiensis 0 genus Kurthia 1649 1 1676 1 2 1 1675 2644826 no rank 0 1750719 1675 1 0 species Kurthia sp. 11kri321 1 1395 5 2 648802 Rummeliibacillus genus 0 Rummeliibacillus stabekisii 0 species 1390 1 241244 648800 22 3 3786 1 genus 0 Solibacillus 0 no rank 2637870 1 1523 species 0 Solibacillus sp. R5-41 2048654 1 1523 76853 1 2241 0 species Solibacillus silvestris 1 130851 46 489 186822 Paenibacillaceae 0 family 0 no rank 85151 3 3748 55079 1 3748 22 3 0 genus Aneurinibacillus 1500254 2144 1 species 0 Aneurinibacillus soli 2642329 1 1582 0 no rank 1582 1 1450761 Aneurinibacillus sp. XH2 species 0 0 genus Thermobacillus 76632 2 23 4732 1 species 0 Thermobacillus composti 377615 1 4709 Paenibacillus genus 0 1002 36 1 114901 44249 172713 1 2140 0 species Paenibacillus kribbensis 2813 1 1126833 Paenibacillus beijingensis species 0 1 5638 61624 Paenibacillus mucilaginosus 0 species 0 species Paenibacillus ihbetae 1870820 3140 1 1 2252 159743 Paenibacillus terrae 0 species 3940 1 2044880 species group 0 Paenibacillus riograndensis species 0 3940 1 483937 1 2827 1616788 Paenibacillus bovis species 0 0 species Paenibacillus naphthalenovorans 162209 2759 1 1178515 1545 1 species 0 Paenibacillus swuensis 59893 1643 1 0 species Paenibacillus peoriae 0 no rank 40075 13 185978 1536775 1 1778 0 species Paenibacillus sp. FSL H7-0737 species 0 Paenibacillus sp. FSL H7-0357 1536774 1 4015 Paenibacillus sp. BIHB4019 species 0 1 2830 1870819 324057 1 2583 0 species Paenibacillus sp. JDR-2 1 2995 481743 Paenibacillus sp. Y412MC10 0 species 4257 1 1536771 Paenibacillus sp. FSL R5-0912 species 0 Paenibacillus sp. FSL R7-0273 species 0 5181 1 1536772 1 1288 1566358 Paenibacillus sp. IHBB 10380 0 species 1541 1 2069255 Paenibacillus sp. lzh-N1 species 0 Paenibacillus sp. FSL P4-0081 0 species 4417 1 1536769 species 0 Paenibacillus sp. FSL R7-0331 1536773 1 4422 0 species Paenibacillus sp. 32O-W 1695218 1 2858 1536770 1 1910 species 0 Paenibacillus sp. FSL R5-0345 species 0 Paenibacillus sabinae 365617 2555 1 189426 2457 1 0 species Paenibacillus odorifer Paenibacillus xylanexedens 0 species 1 2430 528191 160799 1 4627 species 0 Paenibacillus borealis species 0 Paenibacillus donghaensis 414771 4990 1 species 0 Paenibacillus durus 44251 5015 1 Paenibacillus crassostreae species 0 1 1647 1763538 Paenibacillus yonginensis 0 species 4164 1 1462996 169760 1 5085 species 0 Paenibacillus stellifer 1406 1 6085 0 species Paenibacillus polymyxa Paenibacillus larvae 0 species 2037 1 1464 189425 4035 1 0 species Paenibacillus graminis 0 genus Brevibacillus 55080 1 6981 71 4 Brevibacillus formosus species 0 1 1483 54913 1465 2875 1 species 0 Brevibacillus laterosporus Brevibacillus brevis 0 species 2552 1 1393 1 10159 9 70 186823 Alicyclobacillaceae family 0 genus 0 Tumebacillus 432330 3 27 4596 1 0 species Tumebacillus avium 1903704 1 2805 1764 1 1214604 Tumebacillus algifaecis 0 species 79 3 1 2430 1129704 Kyrpidia genus 0 Kyrpidia sp. EA-1 0 species 1 1210 2055160 1141 1 33943 Kyrpidia tusciae 0 species 29330 3063 1 2 16 0 genus Alicyclobacillus Alicyclobacillus acidocaldarius species 0 1 3047 405212 family 0 Thermoactinomycetaceae 186824 1 2706 7 4 292635 1 27 0 genus Laceyella 1 2672 2 77 1677050 Novibacillus genus 0 0 species Novibacillus thermophilus 1471761 2595 1 Staphylococcaceae family 0 42 1673 1 59796 90964 Salinicoccus 0 genus 2 7 1901 1 45669 407035 1894 1 species 0 Salinicoccus halodurans Staphylococcus genus 0 33 885 50656 1 1279 1282 1 2407 species 0 Staphylococcus epidermidis 1294 878 1 species 0 Staphylococcus muscae 214473 1 1599 0 species Staphylococcus nepalensis 1280 1 4848 species 0 Staphylococcus aureus 0 species Staphylococcus equorum 246432 1 1546 29384 1265 1 species 0 Staphylococcus kloosii 985762 902 1 species 0 Staphylococcus agnetis 1632 1 283734 Staphylococcus pseudintermedius 0 species no rank 0 91994 1 1309 1309 1 1715860 Staphylococcus sp. AntiMn-1 species 0 61015 1 1161 species 0 Staphylococcus succinus species 0 Staphylococcus argenteus 985002 1473 1 1296 1 1628 species 0 Staphylococcus sciuri Staphylococcus condimenti 0 species 1385 1 70255 1744 1 29382 Staphylococcus cohnii 0 species 155085 1004 1 species 0 Staphylococcus lutrae 1 1580 1290 Staphylococcus hominis species 0 species 0 Staphylococcus warneri 1292 1 1866 1288 1 1894 species 0 Staphylococcus xylosus 45972 1 3178 0 species Staphylococcus pasteuri 1 1186 28035 Staphylococcus lugdunensis species 0 308354 1 1783 0 species Staphylococcus simiae 1281 1244 1 0 species Staphylococcus carnosus 1 1568 1283 Staphylococcus haemolyticus species 0 70258 1 959 0 species Staphylococcus piscifermentans 0 species Staphylococcus pettenkoferi 170573 779 1 29385 1 1235 species 0 Staphylococcus saprophyticus Staphylococcus capitis species 0 1 1360 29388 1 1240 1286 Staphylococcus simulans species 0 species 0 Staphylococcus schleiferi 1295 1 1391 0 species Staphylococcus stepanovicii 643214 1 1397 46127 1 1285 species 0 Staphylococcus felis 1284 1045 1 species 0 Staphylococcus hyicus Auricoccucs 0 genus 1225 1 2 7 2005363 1849491 1 1218 species 0 Auricoccus indicus 69965 4341 1 4 14 0 genus Macrococcus 69966 1530 1 species 0 Macrococcus caseolyticus no rank 0 1 1576 2619255 species 0 Macrococcus sp. IME1552 1898474 1576 1 0 species Macrococcus canis 1855823 1221 1 0 family Bacillaceae 186817 557 120 1 194224 Oceanobacillus genus 0 4 2 1 2740 182709 182710 2736 1 0 species Oceanobacillus iheyensis 45667 1 2463 3 3 genus 0 Halobacillus Halobacillus mangrovi 0 species 1219 1 402384 1570 1 1241 species 0 Halobacillus halophilus 7 32 7975 1 84406 Virgibacillus 0 genus 1 1427 163877 Virgibacillus necropolis species 0 1288 1 1482 Virgibacillus halodenitrificans species 0 1 1427 1473 Virgibacillus pantothenticus 0 species 0 no rank 2 2550 2620237 0 species Virgibacillus sp. SK37 403957 1 1083 1467 1 1911587 Virgibacillus sp. 6R 0 species species 0 Virgibacillus phasianinus 2017483 1 1251 genus 0 Parageobacillus 1906945 4 2 1 1544 0 species Parageobacillus thermoglucosidasius 1426 1540 1 0 genus 2675229 3992 2 0 species Bacillus simplex 1478 1 2853 1 1139 264697 Bacillus muralis 0 species 1386 5526 58 1 123293 0 genus Bacillus 1 2436 135735 Bacillus endophyticus species 0 Bacillus megaterium 0 species 3770 1 1404 Bacillus horikoshii 0 species 1 1650 79883 Bacillus methanolicus 0 species 1302 1 1471 Bacillus safensis species 0 1 2562 561879 0 species Bacillus weihaiensis 1547283 1 1776 0 species group 20617 9 653685 0 species subgroup 1938374 3 6415 0 species Bacillus siamensis 659243 958 1 0 species Bacillus amyloliquefaciens 1390 1 2861 species 0 Bacillus velezensis 492670 1 2596 1641 1 119858 Bacillus sonorensis species 0 0 species Bacillus paralicheniformis 1648923 1696 1 72361 1 317 species 0 Bacillus vallismortis 1423 6825 1 species 0 Bacillus subtilis 1452 1 1754 species 0 Bacillus atrophaeus Bacillus licheniformis species 0 1 1969 1402 Bacillus beveridgei species 0 1074 1 632773 Bacillus infantis species 0 2130 1 324767 0 species Bacillus smithii 1479 1 1174 0 species group 86661 40966 10 0 species Bacillus thuringiensis 1428 1 11999 1457 1 658666 Bacillus bombysepticus 0 species 155322 1 1514 0 species Bacillus toyonensis 1 12541 1396 Bacillus cereus 0 species 5467 1 1405 Bacillus mycoides species 0 no rank 0 4736 3 2750818 species 0 Bacillus sp. HBCD-sjtu 2053832 1 1328 1251 1 1892404 Bacillus sp. ABP14 0 species Bacillus sp. FDAARGOS_235 species 0 2157 1 1839798 species 0 Bacillus anthracis 1392 1169 1 species 0 Bacillus cytotoxicus 580165 1 2083 0 species Bacillus gibsonii 79881 233 1 1581 1 412384 Bacillus aryabhattai species 0 Bacillus coagulans 0 species 1 3958 1398 Bacillus flexus 0 species 1 1347 86664 1408 1 5805 species 0 Bacillus pumilus Bacillus glycinifermentans species 0 2077 1 1664069 0 species Bacillus cellulosilyticus 1413 1 1157 1178537 1294 1 species 0 Bacillus xiamenensis 1914 1 33932 Bacillus cohnii species 0 no rank 0 17284 19 185979 1 246 1570330 Bacillus sp. BH072 species 0 species 0 Bacillus sp. IHB B 7164 1827146 1 1610 666686 1 2289 species 0 Bacillus sp. 1NLA3E 1 313 1409 Bacillus sp. (in: Bacteria) species 0 0 species Bacillus sp. X1(2014) 1565991 1 1706 1 671 563169 Bacillus sp. SJ-10 0 species 0 species Bacillus sp. LM 4-2 1628753 338 1 1 893 1837130 Bacillus sp. FJAT-14266 species 0 1 1306 98228 Bacillus sp. OxB-1 0 species Bacillus sp. YP1 species 0 396 1 1574141 1 269 2049935 Bacillus sp. Lzh-5 0 species 1127744 1 608 species 0 Bacillus sp. JS 756828 1315 1 0 species Bacillus sp. WP8 Bacillus sp. 275 0 species 547 1 1941347 1446792 557 1 species 0 Bacillus sp. Pc3 Bacillus sp. SDLI1 0 species 1 983 1774743 Bacillus sp. MD-5 species 0 1 528 2009331 1 1354 2026248 Bacillus sp. 1s-1 0 species Bacillus sp. H15-1 0 species 1355 1 1856406 1792192 1 1660 species group 0 293387 1660 1 species 0 Bacillus altitudinis 129337 12148 1 768 15 0 genus Geobacillus 1505648 4 3580 species group 0 169283 967 1 species 0 Geobacillus lituanicus 33938 1 579 species 0 Geobacillus thermocatenulatus Geobacillus thermoleovorans species 0 1 1661 33941 1462 1 373 0 species Geobacillus kaustophilus 1 1133 129338 Geobacillus subterraneus species 0 2642459 6 3409 no rank 0 species 0 Geobacillus sp. C56-T3 691437 303 1 550542 1 254 species 0 Geobacillus sp. Y412MC52 1 1054 471223 Geobacillus sp. WCH70 0 species 1240 1 581103 Geobacillus sp. Y4.1MC1 species 0 1 298 1233873 Geobacillus sp. GHH01 species 0 544556 1 260 species 0 Geobacillus sp. Y412MC61 1077 1 1921421 Geobacillus genomosp. 3 species 0 1422 1082 1 0 species Geobacillus stearothermophilus 0 species Geobacillus thermodenitrificans 33940 1099 1 351195 1011 1 0 genus 0 species Salimicrobium jeotgali 1230341 1011 1 genus 0 5 9566 2675234 79885 1550 1 species 0 Bacillus pseudofirmus 0 species Bacillus lehensis 300825 1 2098 Bacillus krulwichiae species 0 1 1533 199441 Bacillus clausii 0 species 2881 1 79880 Bacillus halodurans species 0 1504 1 86665 0 genus Fictibacillus 1329200 8 3 3224 1 1221500 1 1431 0 species Fictibacillus phosphorivorans 255247 1785 1 species 0 Fictibacillus arsenicus 0 genus Lysinibacillus 400634 110 5 1 8683 1563 1 28031 Lysinibacillus fusiformis 0 species 1 4179 1421 Lysinibacillus sphaericus 0 species 1472 1 1145276 Lysinibacillus varians species 0 no rank 0 2636778 1 1359 0 species Lysinibacillus sp. YS11 2072025 1 1359 genus 0 Aeribacillus 1055323 6 2 1772 1 1 1766 33936 Aeribacillus pallidus 0 species 1 2147 3 2 29331 Amphibacillus genus 0 1449 2144 1 species 0 Amphibacillus xylanus Anoxybacillus 0 genus 34 6 1 6065 150247 2253 2 2639704 0 no rank 1062 1 1490052 Anoxybacillus sp. B2M1 0 species 1490057 1 1191 0 species Anoxybacillus sp. B7M1 294699 1 871 0 species Anoxybacillus amylolyticus 198467 1 1174 0 species Anoxybacillus gonensis 33934 1 1733 0 species Anoxybacillus flavithermus genus 0 Terribacillus 459532 2 3 1 1939 Terribacillus aidingensis 0 species 1 1936 586416 2 3478 2675230 0 genus Bacillus oceanisediminis species 0 1 1812 665099 1 1666 859143 Bacillus kochii species 0 Lentibacillus genus 0 1 1627 16 2 175304 0 species Lentibacillus amyloliquefaciens 1472767 1611 1 Sporolactobacillaceae 0 family 2 6 1673 1 186821 663587 1 1667 0 no rank 85683 1667 1 species 0 [Bacillus] selenitireducens Lactobacillales 0 order 1 905681 164 7253 186826 Streptococcaceae family 0 49 5591 681994 1 1300 Lactococcus genus 0 1 10735 42 5 1357 0 species Lactococcus piscium 1364 1292 1 6310 1 1358 Lactococcus lactis species 0 1 1182 1366 Lactococcus raffinolactis 0 species species 0 Lactococcus garvieae 1363 1909 1 43 5005 1 665668 1301 Streptococcus 0 genus 2608887 7 106128 0 no rank 1759399 7455 1 species 0 Streptococcus sp. A12 1 45697 1839799 Streptococcus sp. FDAARGOS_192 species 0 Streptococcus sp. NPS 308 0 species 1 2434 1902136 1156433 1 21639 species 0 Streptococcus sp. I-P16 1156431 1 20722 0 species Streptococcus sp. I-G2 1319 1259 1 species 0 Streptococcus sp. 'group B' 712633 1 6922 species 0 Streptococcus sp. oral taxon 431 species 0 Streptococcus merionis 400065 1 984 0 species Streptococcus sanguinis 1305 4296 1 1309 1 1756 species 0 Streptococcus mutans 26587 1 1335 Streptococcus equinus 0 species species 0 Streptococcus lutetiensis 150055 1 10786 1349 1 1199 0 species Streptococcus uberis 671232 3 77358 species group 0 species 0 Streptococcus intermedius 1338 1 3260 1 62031 1328 Streptococcus anginosus species 0 1 12067 76860 Streptococcus constellatus 0 species 0 species Streptococcus thermophilus 1308 1 8401 1 5204 1302 Streptococcus gordonii species 0 1 10553 1313 Streptococcus pneumoniae 0 species 0 species Streptococcus macedonicus 59310 1317 1 Streptococcus iniae species 0 1 2446 1346 3695 2 119603 0 species group 1336 2557 1 species 0 Streptococcus equi 0 species Streptococcus dysgalactiae 1334 1 1138 1318 1 32626 species 0 Streptococcus parasanguinis Streptococcus pluranimalium species 0 790 1 82348 1 9585 1303 Streptococcus oralis 0 species 21081 1 28037 Streptococcus mitis species 0 1811193 1326 1 species 0 Streptococcus pantholopis species 0 Streptococcus agalactiae 1311 59534 1 Streptococcus cristatus 0 species 2654 1 45634 1307 55588 1 0 species Streptococcus suis 0 species Streptococcus salivarius 1304 1 175857 257758 4746 1 species 0 Streptococcus pseudopneumoniae 102684 13432 1 species 0 Streptococcus infantarius species 0 Streptococcus halotolerans 1814128 1 979 1219 1 1825069 Streptococcus marmotae 0 species 1 3936 1314 Streptococcus pyogenes 0 species 0 species Streptococcus gallolyticus 315405 1 3752 1 5162 1326 Streptococcus acidominimus 0 species 1 1834 1348 Streptococcus parauberis species 0 1 957 1888195 Streptococcus himalayensis species 0 4895 1 197614 Streptococcus pasteurianus species 0 8 20 8575 1 186827 Aerococcaceae 0 family 1375 8555 1 790 7 0 genus Aerococcus 1217 1 87541 Aerococcus christensenii 0 species species 0 Aerococcus viridans 1377 1 1127 119206 1704 1 0 species Aerococcus sanguinicola 128944 1 1104 species 0 Aerococcus urinaehominis species 0 Aerococcus urinaeequi 51665 1 1466 0 species Aerococcus urinae 1376 1147 1 1 1164 263855 no rank 0 species 0 Lactobacillales bacterium 1993866 1164 1 Enterococcaceae 0 family 99032 1 19 136 81852 33969 1523 1 genus 0 1523 1 33970 Melissococcus plutonius 0 species Vagococcus 0 genus 1 3364 3 30 2737 0 species Vagococcus teuberi 519472 1 1960 633807 1 1374 0 species Vagococcus penaei 1 91615 2883 12 1350 Enterococcus genus 0 1351 9118 1 species 0 Enterococcus faecalis 2005703 2096 1 0 species Enterococcus wangshanyuanii 3 4667 2608891 no rank 0 2057791 1 1386 species 0 Enterococcus sp. CR-Ec1 Enterococcus sp. FDAARGOS_163 species 0 1 1352 2060306 2060307 1929 1 0 species Enterococcus sp. FDAARGOS_375 Enterococcus faecium 0 species 1 61485 1352 Enterococcus casseliflavus 0 species 1180 1 37734 0 species Enterococcus hirae 1354 1 2440 0 species Enterococcus mundtii 53346 2453 1 1 3575 53345 Enterococcus durans species 0 species 0 Enterococcus thailandicus 417368 1 1718 Tetragenococcus 0 genus 1 2394 2 12 51668 1 2382 51669 Tetragenococcus halophilus 0 species 0 family Carnobacteriaceae 186828 49 11 11756 1 Carnobacterium 0 genus 25 5 1 6377 2747 257487 2698 2 0 no rank Carnobacterium sp. CP1 species 0 1285 1 1564681 1413 1 208596 Carnobacterium sp. 17-4 species 0 Carnobacterium inhibens species 0 1 1779 147709 Carnobacterium maltaromaticum species 0 1 1875 2751 Marinilactibacillus genus 0 2348 1 12 2 191769 2632303 1 2336 no rank 0 0 species Marinilactibacillus sp. 15R 1911586 1 2336 Jeotgalibaca 0 genus 32 3 2982 1 1470540 708126 855 1 species 0 Jeotgalibaca dankookensis 1 2095 2621505 0 no rank Jeotgalibaca sp. PTS2502 species 0 2095 1 1903686 Leuconostocaceae 0 family 17 43 10738 1 81850 1243 9 172 5807 1 0 genus Leuconostoc 33964 584 1 species 0 Leuconostoc citreum 1245 1 1292 species 0 Leuconostoc mesenteroides 451 1 1246 Leuconostoc lactis species 0 255248 384 1 0 species Leuconostoc garlicum 1252 716 1 species 0 Leuconostoc carnosum 2685106 616 1 0 no rank 979982 616 1 0 species Leuconostoc sp. C2 Leuconostoc kimchii species 0 1 624 136609 0 species Leuconostoc gelidum 1244 968 1 Weissella genus 0 4106 1 32 6 46255 1457 1 137591 Weissella cibaria species 0 1631871 635 1 0 species Weissella jogaejeotgali species 0 Weissella koreensis 165096 646 1 Weissella ceti 0 species 1 482 759620 854 1 1249 Weissella paramesenteroides species 0 782 1 46254 genus 0 782 1 1247 Oenococcus oeni species 0 610 58 1 85169 33958 Lactobacillaceae family 0 genus 0 2742598 5087 3 1 1395 97478 Lactobacillus mucosae 0 species Lactobacillus reuteri species 0 1 2089 1598 1613 1603 1 0 species Lactobacillus fermentum 3 5938 2759736 0 genus 1582 1 2785 0 species Lactobacillus casei 47715 1 1432 0 species Lactobacillus rhamnosus 1597 1 1721 0 species Lactobacillus paracasei 0 genus Lactobacillus 1578 1 30075 16 2486 0 species Lactobacillus johnsonii 33959 1 2934 1579 1472 1 0 species Lactobacillus acidophilus species 0 Lactobacillus helveticus 1587 2100 1 109790 1 942 species 0 Lactobacillus jensenii 1 3675 1604 Lactobacillus amylovorus species 0 Lactobacillus gallinarum 0 species 1 2208 52242 species 0 Lactobacillus acetotolerans 1600 1 1134 1 6145 1584 Lactobacillus delbrueckii 0 species 1596 1 2245 0 species Lactobacillus gasseri Lactobacillus amylolyticus 0 species 892 1 83683 species 0 Lactobacillus kefiranofaciens 267818 1 983 2620435 2859 4 no rank 0 Lactobacillus sp. CBA3606 species 0 1 720 2099789 637 1 2108362 Lactobacillus sp. D1501 0 species 0 species Lactobacillus sp. CBA3605 2099788 1 669 833 1 1545702 Lactobacillus sp. wkB8 species 0 genus 0 2767886 2810 3 Lactobacillus koreensis 0 species 841 1 637971 1 1124 1580 Lactobacillus brevis 0 species 267363 845 1 0 species Lactobacillus zymae genus 0 Pediococcus 1253 6 51 4748 1 1670797 830 1 0 species group 1254 1 830 0 species Pediococcus acidilactici Pediococcus inopinatus species 0 1 674 114090 Pediococcus pentosaceus 0 species 1 1271 1255 1 855 187452 Pediococcus claussenii 0 species Pediococcus damnosus species 0 1 1067 51663 0 genus 1 968 2767890 1193095 968 1 0 species Lactobacillus hokkaidonensis 3166 2 2767885 0 genus Lactobacillus curvatus 0 species 1 1268 28038 species 0 Lactobacillus sakei 1599 1898 1 0 genus 2384 3 2767893 species 0 Lactobacillus parabuchneri 152331 1 513 1 869 1581 Lactobacillus buchneri species 0 1 1002 1138822 Lactobacillus curieae 0 species 3 3354 2767842 0 genus 60520 611 1 0 species Lactobacillus paraplantarum Lactobacillus plantarum species 0 1716 1 1590 1027 1 1589 Lactobacillus pentosus species 0 0 genus 2767889 2 2016 1173 1 1610 Lactobacillus coryniformis species 0 0 species Lactobacillus backii 375175 1 843 6687 6 2767879 genus 0 1612 1 1375 0 species Lactobacillus farciminis Lactobacillus heilongjiangensis species 0 940 1 1074467 1847728 1 1048 species 0 Lactobacillus allii 0 species Lactobacillus alimentarius 1602 1 1058 species 0 Lactobacillus crustorum 392416 1066 1 1 1200 1007676 Lactobacillus ginsenosidimutans 0 species genus 0 1 3150 2767876 1603 1 3150 0 species Lactobacillus amylophilus 0 genus 2767881 1584 2 Lactobacillus sanfranciscensis species 0 728 1 1625 species 0 Lactobacillus lindneri 53444 856 1 984 1 2767892 genus 0 240427 1 984 0 species Lactobacillus paracollinoides 4 11026 2767887 genus 0 89059 1129 1 0 species Lactobacillus acidipiscis 1 4010 1624 Lactobacillus salivarius species 0 Lactobacillus ruminis 0 species 1 4695 1623 1601 1192 1 0 species Lactobacillus agilis 2767877 1 582 genus 0 species 0 Lactobacillus kunkeei 148814 1 582 0 no rank 84086 1 1625 1625 1 243899 endosymbiont 'TC1' of Trimyema compressum species 0 Limnochordia class 0 4 5 1 2435 1676648 1 2431 62 4 1676649 Limnochordales 0 order Limnochordaceae 0 family 1 2369 3 14 1676650 Limnochorda 0 genus 61 2 2355 1 1676651 1555112 2294 1 0 species Limnochorda pilosa 2205 2 33974 0 no rank 1930845 30 2 1 2205 0 genus Ndongobacter Ndongobacter massiliensis species 0 2175 1 1871025 33450 1 19 17 1737404 Tissierellia 0 class 1737407 2 1390 no rank 0 1 1390 27 2 1582879 Ezakiella genus 0 Ezakiella massiliensis species 0 1 1363 1852374 order 0 Tissierellales 1737405 16 1387 1 32043 Gottschalkiaceae family 0 1 3568 6 3 2042895 Gottschalkia 0 genus 2 4 3562 1 1505664 3558 1 1556 Gottschalkia acidurici 0 species family 0 Peptoniphilaceae 1570339 12 1952 1 27088 Peptoniphilus genus 0 2 5 3994 1 162289 1 3989 2637196 0 no rank 1912856 3989 1 species 0 Peptoniphilus sp. ING2-D1G 165779 1 4386 8 3 0 genus Anaerococcus 1870984 1 1947 0 species Anaerococcus mediterraneensis species 0 Anaerococcus prevotii 33034 1 2431 1 3974 19 2 150022 Finegoldia genus 0 Finegoldia magna 0 species 3955 1 1260 genus 0 Murdochiella 1161127 8 2 1 9562 Murdochiella vaginalis species 0 9554 1 1852373 3220 1 33 2 543311 Parvimonas genus 0 Parvimonas micra species 0 3187 1 33033 186801 15141444 1 530 225 0 class Clostridia 166 21793 15081777 1 186802 Clostridiales order 0 186806 1 34721 5 12 family 0 Eubacteriaceae 1 3798 2 2 33951 Acetobacterium 0 genus species 0 Acetobacterium woodii 33952 1 3796 genus 0 Eubacterium 1730 1 30911 1481 2 1 29430 1736 Eubacterium limosum species 0 186804 533 12 238017 1 0 family Peptostreptococcaceae 0 genus Peptoclostridium 1481960 2 6 4208 1 species 0 Peptoclostridium acidaminophilum 1731 4202 1 Paeniclostridium 0 genus 19470 1 1 2 1849828 1505 19469 1 0 species Paeniclostridium sordellii 0 no rank 1 3188 1411023 2081703 3188 1 0 species Peptostreptococcaceae bacterium oral taxon 929 Clostridioides genus 0 204576 1 2 312 1870884 204264 1 1496 Clostridioides difficile 0 species 10 2 3179 1 186831 Acetoanaerobium 0 genus species 0 Acetoanaerobium sticklandii 1511 3169 1 0 genus Filifactor 44259 1 2863 2 15 143361 2848 1 species 0 Filifactor alocis 0 family Ruminococcaceae 541000 4804586 1 1072 13 genus 0 Herbivorax 1890281 2 1 1 107262 230 3 1263 Ruminococcus 0 genus Ruminococcus albus 0 species 20950 1 1264 Ruminococcus bicirculans 0 species 1 86082 1160721 2 2713 4536060 1 216851 Faecalibacterium genus 0 0 species Faecalibacterium prausnitzii 853 1 4533347 1 10064 552397 no rank 0 0 species [Clostridium] cellulosi 29343 10064 1 0 genus Ethanoligenens 253238 24539 1 2 17 253239 1 24522 0 species Ethanoligenens harbinense no rank 0 2305133 1 28390 28390 1 1572656 Ruminococcaceae bacterium CPB6 species 0 195 2 1 97197 946234 Flavonifractor 0 genus 292800 1 97002 species 0 Flavonifractor plautii Clostridiaceae family 0 905 41 351417 1 31979 Clostridium 0 genus 30 1807 1 333651 1485 Clostridium bornimense 0 species 1 7785 1216932 species 0 Clostridium autoethanogenum 84023 5204 1 Clostridium carboxidivorans 0 species 6599 1 217159 species 0 Clostridium perfringens 1502 1 39478 Clostridium aceticum 0 species 1 3894 84022 5635 1 1542 Clostridium novyi 0 species 1 5350 238834 Clostridium estertheticum 0 species Clostridium baratii species 0 1 16360 1561 species 0 Clostridium saccharobutylicum 169679 1 10259 1548 7714 1 0 species Clostridium scatologenes 1 4111 1519 Clostridium tyrobutyricum 0 species species 0 Clostridium ljungdahlii 1538 5068 1 Clostridium kluyveri species 0 6633 1 1534 1493 7372 1 0 species Clostridium cellulovorans Clostridium saccharoperbutylacetonicum species 0 1 11666 36745 1491 1 35879 species 0 Clostridium botulinum Clostridium pasteurianum species 0 1 9460 1501 2614128 53407 2 0 no rank 1042156 46862 1 species 0 Clostridium sp. SY8519 Clostridium sp. BNL1100 0 species 6545 1 755731 1 9894 394958 Clostridium taeniosporum 0 species Clostridium butyricum 0 species 1 15817 1492 0 species Clostridium chauvoei 46867 15555 1 0 species Clostridium cochlearium 1494 1 6677 13896 1 1520 Clostridium beijerinckii species 0 0 species Clostridium argentinense 29341 1 6231 Clostridium sporogenes species 0 4348 1 1509 1497 1 4730 0 species Clostridium formicaceticum Clostridium tetani species 0 8290 1 1513 species 0 Clostridium acetobutylicum 1488 4532 1 114627 1 5628 17 3 0 genus Alkaliphilus Alkaliphilus oremlandii 0 species 2459 1 461876 1 3152 208226 Alkaliphilus metalliredigens species 0 390805 5580 1 41 2 0 genus Geosporobacter 1424294 1 5539 species 0 Geosporobacter ferrireducens Mordavella 0 genus 422 1 1981033 genus 0 Candidatus Arthromitus 49082 1 5231 75 4 2638829 5156 3 no rank 0 species 0 Candidatus Arthromitus sp. SFB-mouse 49118 1642 1 Candidatus Arthromitus sp. SFB-rat-Yit species 0 1847 1 1041504 species 0 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 1667 1 family 0 Syntrophomonadaceae 68298 1 4 1916 1 genus 0 862 985 1 Syntrophomonas wolfei species 0 1 985 863 Syntrophothermus genus 0 1 930 2 1 129001 species 0 Syntrophothermus lipocalidus 86170 929 1 0 no rank 538999 233518 10 2717089 1 140879 genus 0 2086584 140879 1 species 0 Mordavella sp. Marseille-P3756 3 5 2739 1 539000 Clostridiales Family XVII. Incertae Sedis 0 family 73918 2 27 2734 1 genus 0 Thermaerobacter Thermaerobacter marianensis species 0 2707 1 73919 family 0 Clostridiales Family XIII. Incertae Sedis 543314 11637 1 4 23 143393 7751 1 species 0 [Eubacterium] sulci 29 2 1 3863 86331 Mogibacterium genus 0 114527 1 3834 0 species Mogibacterium diversum Intestinimonas genus 0 2 1021 78263 1 1392389 species 0 Intestinimonas butyriciproducens 1297617 1 77242 0 family Symbiobacteriaceae 543349 35 3 1 5629 2733 5594 1 16 2 0 genus Symbiobacterium 1 5578 2734 Symbiobacterium thermophilum 0 species family 0 Peptococcaceae 186807 247 29 51170 1 0 genus 2282740 1 3556 Desulfotomaculum gibsoniae species 0 3556 1 102134 genus 0 Dehalobacter 56112 99 4 1 8799 55583 1 2718 0 species Dehalobacter restrictus no rank 0 2635733 2 5982 species 0 Dehalobacter sp. CF 1131462 3190 1 0 species Dehalobacter sp. DCA 1147129 1 2792 Syntrophobotulus genus 0 2741 1 1 2 51196 Syntrophobotulus glycolicus 0 species 1 2740 51197 79206 6527 1 397 4 genus 0 Desulfosporosinus Desulfosporosinus orientis species 0 1977 1 1563 0 species Desulfosporosinus acidiphilus 885581 1 2144 Desulfosporosinus meridiei 0 species 2009 1 79209 genus 0 Dehalobacterium 51514 11 2 4461 1 4450 1 51515 Dehalobacterium formicoaceticum species 0 0 genus 2282742 1603 1 0 species Desulfotomaculum acetoxidans 58138 1603 1 0 genus Candidatus Desulforudis 471826 1 1930 2 10 species 0 Candidatus Desulforudis audaxviator 471827 1920 1 Thermincola genus 0 1 2 1 1986 278993 0 species Thermincola potens 863643 1985 1 0 genus Desulfotomaculum 1562 5 328 9216 1 Desulfotomaculum nigrificans 0 species 1 2065 1565 species 0 Desulfotomaculum reducens 59610 1639 1 species 0 Desulfotomaculum ruminis 1564 3323 1 0 species Desulfotomaculum ferrireducens 1833852 1 1861 10104 1 71 5 36853 Desulfitobacterium genus 0 4305 1 49338 Desulfitobacterium hafniense 0 species 0 species Desulfitobacterium metallireducens 142877 1 1748 1 1658 233055 Desulfitobacterium dichloroeliminans 0 species 0 species Desulfitobacterium dehalogenans 36854 1 2322 27 3732 9182382 1 186803 Lachnospiraceae family 0 1 41142 3 64 830 Butyrivibrio 0 genus 20202 1 185008 Butyrivibrio hungatei 0 species 43305 20876 1 species 0 Butyrivibrio proteoclasticus 0 genus 2719231 1 43280 [Clostridium] saccharolyticum 0 species 1 43280 84030 11 2 11999 1 1663717 Herbinix genus 0 11988 1 1679721 Herbinix luporum 0 species 2039240 6638 1 18 2 genus 0 Anaerotignum Anaerotignum propionicum species 0 6620 1 28446 genus 0 Roseburia 841 2 156 823985 1 Roseburia hominis species 0 823829 1 301301 0 genus Blautia 572511 273857 1 3 206 2648079 1 69244 no rank 0 Blautia sp. YL58 0 species 69244 1 1796616 Blautia hansenii species 0 204407 1 1322 869911 1 119 2 207244 Anaerostipes 0 genus 0 species Anaerostipes hadrus 649756 869792 1 0 genus 262849 1 2719313 [Clostridium] bolteae species 0 262849 1 208479 1506553 1043 4 244111 1 0 genus Lachnoclostridium 1871021 151573 1 species 0 Lachnoclostridium phocaeense 0 no rank 1 74780 2608895 1 74780 1834196 Lachnoclostridium sp. YL32 species 0 1 16715 66219 Lachnoclostridium phytofermentans 0 species 2569097 1 504213 0 genus [Eubacterium] hallii 0 species 504213 1 39488 186928 5794783 2 no rank 0 52506 1 712991 Lachnospiraceae bacterium oral taxon 500 0 species species 0 [Eubacterium] rectale 39491 5742277 1 28050 292458 1 genus 0 species 0 [Eubacterium] eligens 39485 1 292458 Cellulosilyticum 0 genus 15 2 1 9424 698776 Cellulosilyticum lentocellum species 0 1 9409 29360 Oscillospiraceae family 0 51 3 30438 1 216572 genus 0 Oscillibacter 459786 1 30387 2 87 351091 1 30300 species 0 Oscillibacter valericigenes 0 family Christensenellaceae 990719 59 3 36646 1 Christensenella 0 genus 2 838 1 36587 990721 Christensenella massiliensis 0 species 1 35749 1805714 family 0 Heliobacteriaceae 31984 1 4886 3 56 Heliobacterium 0 genus 4830 1 2 162 2697 Heliobacterium modesticaldum species 0 4668 1 35701 0 family 2304686 84658 12 1 2 1 7917 1637257 Mageeibacillus genus 0 884684 7916 1 species 0 Mageeibacillus indolicus Ruminiclostridium 0 genus 7510 1 2 1110 1508657 1 6400 1521 [Clostridium] cellulolyticum 0 species 2305130 1 42383 no rank 0 1834198 1 42383 0 species Ruminiclostridium sp. KB18 0 genus 1 4424 2304693 84032 1 4424 0 species [Clostridium] thermosuccinogenes 29 2 2492 1 236752 Fastidiosipila genus 0 236753 1 2463 species 0 Fastidiosipila sanguinis 0 genus 2304692 3 13539 species 0 Herbivorax saccincola 1677857 3644 1 [Clostridium] clariflavum 0 species 5417 1 288965 4478 1 1515 Ruminiclostridium thermocellum 0 species 2304691 6393 1 0 genus 1 6393 1510 [Clostridium] stercorarium 0 species 485256 20 4 1847 1 0 order Natranaerobiales 485255 1 1827 4 3 0 family Natranaerobiaceae 0 genus Natranaerobius 375928 1 1823 184 2 species 0 Natranaerobius thermophilus 375929 1639 1 1 8020 12 6 53433 Halanaerobiales 0 order 53434 5 16 1 3066 family 0 Halobacteroidaceae 4 2 1 1624 28186 Acetohalobium 0 genus 28187 1 1620 species 0 Acetohalobium arabaticum 42417 1 2 1 1426 0 genus Halobacteroides 42422 1425 1 species 0 Halobacteroides halobius 18 6 1 4948 972 Halanaerobiaceae 0 family 2330 71 3 3720 1 genus 0 Halanaerobium 1 2176 2331 Halanaerobium praevalens 0 species 656519 1 1473 0 species Halanaerobium hydrogeniformans Halothermothrix genus 0 5 2 1 1210 32636 Halothermothrix orenii 0 species 1 1205 31909 75 39 46533 1 68295 Thermoanaerobacterales order 0 family 0 Thermoanaerobacterales Family IV. Incertae Sedis 543372 3 19 1577 1 genus 0 Mahella 252965 4 2 1558 1 species 0 Mahella australiensis 252966 1554 1 227387 2 1 449 1 family 0 Thermodesulfobiaceae 0 genus 227388 1 448 species 0 Thermodesulfobium narugense 184064 1 448 543371 74 13 1 19413 0 family Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterium 0 genus 29 3 1 6471 28895 Thermoanaerobacterium xylanolyticum species 0 2437 1 29329 species 0 Thermoanaerobacterium thermosaccharolyticum 1517 4005 1 genus 0 Caldicellulosiruptor 44000 1 12868 302 9 species 0 Caldicellulosiruptor kristjanssonii 52765 1 1478 species 0 Caldicellulosiruptor obsidiansis 717609 1 1669 1647 1 44001 Caldicellulosiruptor saccharolyticus species 0 Caldicellulosiruptor bescii species 0 1 1535 31899 0 species Caldicellulosiruptor owensensis 55205 1 1515 0 species Caldicellulosiruptor kronotskyensis 413889 1540 1 1470 1 52766 Caldicellulosiruptor lactoaceticus species 0 413888 1712 1 0 species Caldicellulosiruptor hydrothermalis 186814 64 20 1 25019 0 family Thermoanaerobacteraceae 3628 4 42857 0 no rank 1 943 14 2 42837 Ammonifex 0 genus 929 1 42838 Ammonifex degensii species 0 44260 2 25 2685 1 0 genus Moorella 1525 2660 1 species 0 Moorella thermoacetica 0 genus Thermoanaerobacter 1754 1 16511 9 547 0 species Thermoanaerobacter wiegelii 46354 1518 1 Thermoanaerobacter brockii 0 species 2425 1 29323 583357 1 1417 species 0 Thermoanaerobacter mathranii 0 species Thermoanaerobacter pseudethanolicus 496866 1 2421 0 species Thermoanaerobacter kivui 2325 1 1593 2636821 4718 2 no rank 0 0 species Thermoanaerobacter sp. X513 573062 2425 1 0 species Thermoanaerobacter sp. X514 399726 2293 1 Thermoanaerobacter italicus species 0 1 1872 108150 Caldanaerobacter genus 0 1419 1 2 1 249529 1418 1 911092 Caldanaerobacter subterraneus species 0 genus 0 Carboxydothermus 129957 2 2 1 2342 129958 2340 1 species 0 Carboxydothermus hydrogenoformans 140458 19 2 1055 1 0 genus Thermacetogenium 1036 1 85874 Thermacetogenium phaeum 0 species 0 order 3 2737 2770089 family 0 2770092 1597 1 0 genus 499228 1597 1 0 species Tepidanaerobacter acetatoxydans 499229 1 1597 0 family 2770093 2 1140 2 12 1 1140 291988 Thermosediminibacter 0 genus species 0 Thermosediminibacter oceani 291990 1 1128 Negativicutes 0 class 31 145 134777 1 909932 1843488 1 27996 5 73 0 order Acidaminococcales Acidaminococcaceae 0 family 4 170 27923 1 909930 904 1 27753 327 3 genus 0 Acidaminococcus 1 11326 905 Acidaminococcus fermentans 0 species Acidaminococcus intestini species 0 1 16100 187327 Veillonellales order 0 65575 1 11 2099 1843489 31977 1 63476 1522 10 family 0 Veillonellaceae 29465 3 72 25447 1 0 genus Veillonella species 0 Veillonella parvula 29466 1 21796 Veillonella rodentium species 0 3579 1 248315 Negativicoccus genus 0 1 3673 2 30 909928 1 3643 1702287 Negativicoccus massiliensis 0 species 0 genus Megasphaera 906 23261 1 2 1454 Megasphaera elsdenii 0 species 21807 1 907 Dialister 0 genus 2 162 1 9573 39948 Dialister pneumosintes species 0 1 9411 39950 Selenomonadales order 0 14 201 1 41061 909929 1843490 2 4 1 5060 0 family Sporomusaceae 0 genus Pelosinus 365348 3 86 1 5058 1 2332 2629460 0 no rank 484770 1 2332 species 0 Pelosinus sp. UFO1 2640 1 365349 Pelosinus fermentans species 0 1843491 1 35800 9 216 0 family Selenomonadaceae 1 30585 194 6 970 Selenomonas genus 0 5639 1 69823 Selenomonas sputigena 0 species Selenomonas ruminantium 0 species 10734 1 971 2637378 14018 3 no rank 0 1 4553 712538 Selenomonas sp. oral taxon 478 species 0 species 0 Selenomonas sp. oral taxon 136 713030 1 4920 4545 1 1884263 Selenomonas sp. oral taxon 920 species 0 Megamonas 0 genus 1 4999 3 2 158846 1 4996 158847 Megamonas hypermegale 0 species class 0 Erysipelotrichia 526524 11 22 75394 1 Erysipelotrichales 0 order 10 64 75372 1 526525 75308 1 190 9 128827 Erysipelotrichaceae 0 family Erysipelothrix genus 0 286 3 8305 1 1647 Erysipelothrix larvae 0 species 1 3482 1514105 1 4537 1648 Erysipelothrix rhusiopathiae species 0 2 48 1 13239 1729679 Faecalibaculum 0 genus 1 13191 1702221 Faecalibaculum rodentium 0 species 544447 1 35623 0 no rank species 0 Erysipelotrichaceae bacterium I46 1834207 35623 1 Turicibacter genus 0 1 17951 35 2 191303 no rank 0 2638206 1 17916 species 0 Turicibacter sp. H121 1712675 17916 1 544448 101 9 1 79452 phylum 0 Tenericutes no rank 0 7669 2 713063 0 species Tenericutes bacterium MO-XQ 1911684 3823 1 Tenericutes bacterium MZ-XQ 0 species 1 3846 1911683 no rank 0 2799557 2165 2 1912503 9 2 2165 1 0 genus Candidatus Izimaplasma no rank 0 2624196 2156 1 Candidatus Izimaplasma sp. HR1 0 species 1 2156 1541959 31969 69609 1 96 99 0 class Mollicutes Acholeplasmatales order 0 1 12481 15 13 186329 0 family Acholeplasmataceae 2146 1 12466 40 12 201 5 9242 1 2147 Acholeplasma 0 genus 1 2706 38986 Acholeplasma palmae 0 species species 0 Acholeplasma oculi 35623 1 2958 1 1687 2148 Acholeplasma laidlawii 0 species Acholeplasma brassicae 0 species 1 1690 61635 0 genus Candidatus Phytoplasma 33926 175 6 3184 1 3 1906 85620 species group 0 Aster yellows witches'-broom phytoplasma 0 species 554 1 229545 1 627 202462 Maize bushy stunt phytoplasma species 0 100379 725 1 0 species Onion yellows phytoplasma species group 0 536 1 85630 1 536 37692 Candidatus Phytoplasma mali 0 species 85632 567 1 0 species group 59748 1 567 0 species Candidatus Phytoplasma australiense 1 23477 43 78 2085 Mycoplasmatales order 0 family 0 Mycoplasmataceae 2092 42 88 23399 1 Mycoplasma 0 genus 27 201 15948 1 2093 species 0 Mycoplasma yeatsii 51365 1226 1 Mycoplasma pneumoniae species 0 165 1 2104 370 1 2128 Mycoplasma flocculare species 0 2098 854 1 0 species Mycoplasma hominis 0 no rank 2683645 1233 1 1233 1 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 0 species 29501 1 71 species 0 Mycoplasma haemofelis species 0 Mycoplasma mobile 2118 553 1 Mycoplasma parvum 0 species 230 1 984991 65123 133 1 species 0 Mycoplasma wenyonii Mycoplasma suis 0 species 1 192 57372 1 527 45362 Mycoplasma bovoculi 0 species species 0 Mycoplasma dispar 86660 341 1 Mycoplasma ovis 0 species 109 1 171632 1 779 28227 Mycoplasma penetrans species 0 430 1 29554 Mycoplasma canadense 0 species 1 156 2097 Mycoplasma genitalium 0 species 420 1 2096 Mycoplasma gallisepticum 0 species 2123 1 451 species 0 Mycoplasma putrefaciens Mycoplasma crocodyli 0 species 501 1 50052 Mycoplasma arthritidis 0 species 1 309 2111 1 111 136241 Mycoplasma haemocanis 0 species 2099 1 381 species 0 Mycoplasma hyopneumoniae 418 1 2100 Mycoplasma hyorhinis species 0 0 species group 5787 3 656088 3277 1 2102 Mycoplasma mycoides 0 species 1148 1 2105 Mycoplasma leachii 0 species 1 1362 2095 Mycoplasma capricolum 0 species genus 0 1053 2 2129 species 0 Ureaplasma urealyticum 2130 1 523 530 1 134821 Ureaplasma parvum species 0 genus 0 2767358 12 6310 species 0 Mycoplasma agalactiae 2110 1 513 1 810 28903 Mycoplasma bovis species 0 Mycoplasma bovirhinis 0 species 1 482 29553 Mycoplasma pulmonis 0 species 1 360 2107 1 700 2115 Mycoplasma fermentans species 0 species 0 Mycoplasma synoviae 2109 1 287 1 577 2112 Mycoplasma bovigenitalium species 0 species 0 Mycoplasma arginini 2094 646 1 29555 514 1 species 0 Mycoplasma canis Mycoplasma californicum 0 species 1 455 2113 species 0 Mycoplasma cynos 171284 562 1 404 1 48003 Mycoplasma pullorum 0 species 44 39 33552 1 186328 Entomoplasmatales 0 order Entomoplasmataceae family 0 13190 1 14 37 33925 0 genus Mesoplasma 46239 8 136 10000 1 1320 1 2151 Mesoplasma florum 0 species Mesoplasma syrphidae 0 species 1 2490 225999 2149 1 936 0 species Mesoplasma entomophilum Mesoplasma lactucae 0 species 2673 1 138853 1 934 324078 Mesoplasma coleopterae species 0 219745 1 762 0 species Mesoplasma tabanidae Mesoplasma chauliocola 0 species 749 1 216427 46238 5 69 1 3153 genus 0 Entomoplasma 712 1 215578 Entomoplasma somnilux 0 species 939 1 81459 Entomoplasma melaleucae species 0 74700 1 597 species 0 Entomoplasma freundtii 214888 1 836 species 0 Entomoplasma luminosum 2131 1 20318 24 21 family 0 Spiroplasmataceae 1047 23 1 20297 2132 Spiroplasma genus 0 species 0 Spiroplasma litorale 216942 1209 1 0 species Spiroplasma cantharicola 362837 923 1 216937 1 1054 0 species Spiroplasma floricola 0 species Spiroplasma helicoides 216938 768 1 875 1 47834 Spiroplasma kunkelii 0 species 1 650 216934 Spiroplasma corruscae species 0 species 0 Spiroplasma turonicum 216946 789 1 0 no rank 2 1414 2637901 1898044 1 707 species 0 Spiroplasma sp. TU-14 species 0 Spiroplasma sp. NBRC 100390 1914410 1 707 0 species Spiroplasma syrphidicola 216945 1 689 1 936 1114980 Spiroplasma atrichopogonis 0 species Spiroplasma chrysopicola 0 species 1 643 216933 2139 1 775 0 species Spiroplasma clarkii species 0 Spiroplasma apis 2137 1 525 Spiroplasma taiwanense species 0 1 732 2145 Spiroplasma sabaudiense species 0 1 1123 216944 1 1531 315358 Spiroplasma eriocheiris 0 species Spiroplasma mirum 0 species 1 887 2144 677 1 2136 Spiroplasma monobiae species 0 Spiroplasma diminutum species 0 1 1192 216936 0 species Spiroplasma citri 2133 810 1 Spiroplasma culicicola 0 species 1 1048 216935 1783257 47521 100 0 clade 8702 3 256845 phylum 0 1313211 8702 1 27 3 0 class Lentisphaeria Victivallales 0 order 1893 2 1 8675 278082 0 no rank 6782 1 1674876 2094242 1 6782 species 0 Victivallales bacterium CCUG 44730 Planctomycetes phylum 0 17828 1 1 38 203682 class 0 2517206 763 4 1127829 39 4 763 1 order 0 Candidatus Brocadiales 1127830 724 1 2 3 family 0 Candidatus Brocadiaceae 380738 1 722 6 2 0 genus Candidatus Kuenenia Candidatus Kuenenia stuttgartiensis 0 species 1 716 174633 2641 1 7 23 666505 Phycisphaerae 0 class order 0 Phycisphaerales 666506 1512 1 4 76 family 0 Phycisphaeraceae 666507 6 3 1 1436 Phycisphaera genus 0 43 2 1430 1 666508 547188 1387 1 species 0 Phycisphaera mikurensis 1106 2 2483366 0 order 0 family 1106 2 2483367 2483368 1106 2 genus 0 1941349 546 1 species 0 Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerae bacterium L21-RPul-D3 0 species 560 1 1940790 0 class Planctomycetia 203683 26 90 14423 1 2691356 7 4548 order 0 4548 1 7 21 1763524 Isosphaeraceae family 0 0 genus Singulisphaera 466152 7 2 1 1319 1 1312 466153 Singulisphaera acidiphila 0 species genus 0 Isosphaera 127 856 1 15 2 0 species Isosphaera pallida 128 1 841 genus 0 Paludisphaera 1763521 1 2352 55 2 2297 1 1387353 Paludisphaera borealis species 0 0 order 2691354 1371 5 844 4 2691357 family 0 genus 0 Pirellula 123 439 1 2 2 437 1 125 Pirellula staleyi species 0 genus 0 Rhodopirellula 265488 1 405 2 1 0 species Rhodopirellula baltica 265606 1 404 2691358 1 527 0 family 1 527 1676125 0 genus Thermogutta terrifontis species 0 527 1 1331910 order 0 3 810 2691355 Gemmataceae 0 family 810 1 3 5 1914233 9 2 805 1 113 Gemmata 0 genus 796 1 2622970 no rank 0 0 species Gemmata sp. SH-PL17 1630693 1 796 Planctomycetales order 0 7604 1 364 10 112 126 7240 1 9 31 family 0 Planctomycetaceae Rubinisphaera 0 genus 3 2 604 1 1649490 species 0 Rubinisphaera brasiliensis 119 601 1 1649480 1 1031 genus 0 1 1031 120 Planctopirus limnophila species 0 27 2 1096 1 1936111 Fuerstia genus 0 1891926 1 1069 0 species Fuerstia marisgermanicae 3 56 1 4478 118 Planctomyces 0 genus no rank 0 2648843 2 4422 0 species Planctomyces sp. SH-PL62 1636152 3404 1 species 0 Planctomyces sp. SH-PL14 1632864 1 1018 74201 64 29 16686 1 phylum 0 Verrucomicrobia 417295 2418 2 no rank 0 0 species Verrucomicrobia bacterium 2026799 1192 1 1 1226 1637999 Verrucomicrobia bacterium IMCC26134 0 species 6747 1 174 12 414999 Opitutae 0 class Opitutales order 0 6135 1 187 7 415000 5948 1 112 6 134623 Opitutaceae family 0 178440 9 2 1250 1 genus 0 Opitutus 1241 1 107709 Opitutus terrae 0 species 1961799 2051 1 2 17 0 genus Lacunisphaera 1838286 2034 1 0 species Lacunisphaera limnophila 0 no rank 1 2535 278955 794903 2535 1 species 0 Opitutaceae bacterium TAV5 415001 1 438 9 4 order 0 Puniceicoccales Puniceicoccaceae 0 family 3 4 1 429 415002 0 genus Coraliomargarita 442430 425 1 2 4 1 421 395922 Coraliomargarita akajimensis species 0 1955630 1 648 4 6 0 class Methylacidiphilae Methylacidiphilales 0 order 5 1 1 644 717963 0 family Methylacidiphilaceae 717964 1 643 3 4 1 640 3 1 511745 Methylacidiphilum genus 0 Methylacidiphilum fumariolicum species 0 1 320 591154 0 species Methylacidiphilum infernorum 511746 319 1 134549 80 2 class 0 Candidatus Xiphinematobacter genus 0 80 1 1 2 134550 no rank 0 2648876 79 1 79 1 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 0 species 0 class Verrucomicrobiae 203494 6 3 6729 1 5 23 6726 1 48461 Verrucomicrobiales order 0 0 family Akkermansiaceae 1647988 1 6703 4 54 0 genus Akkermansia 239934 6649 1 22 3 species 0 Akkermansia muciniphila 239935 4362 1 Akkermansia glycaniphila species 0 1 2265 1679444 phylum 0 25 2914 204428 class 0 Chlamydiia 204429 2914 1 13 25 Chlamydiales 0 order 1859 1 24 14 51291 809 1835 1 1 13 0 family Chlamydiaceae 1113537 12 1834 0 no rank 810 12 30 1 1834 0 genus Chlamydia 127 1 813 Chlamydia trachomatis species 0 151 1 83558 Chlamydia pneumoniae species 0 Chlamydia suis 0 species 161 1 83559 145 1 83557 Chlamydia caviae species 0 83554 1 119 species 0 Chlamydia psittaci 1457153 178 1 species 0 Chlamydia gallinacea 0 species Chlamydia avium 1457141 1 160 Chlamydia abortus 0 species 1 201 83555 83560 115 1 species 0 Chlamydia muridarum 83556 1 235 species 0 Chlamydia felis 1 212 85991 Chlamydia pecorum 0 species 1 1042 2 10 1963360 Parachlamydiales order 0 0 family 92713 597 4 83551 2 2 1 337 genus 0 Parachlamydia 0 species Parachlamydia acanthamoebae 83552 1 335 2 2 1 260 282132 Candidatus Protochlamydia genus 0 1 258 389348 Candidatus Protochlamydia naegleriophila 0 species 137 1 3 3 92712 Simkaniaceae 0 family genus 0 Simkania 34093 2 2 134 1 Simkania negevensis species 0 132 1 83561 2 2 1 306 92714 Waddliaceae family 0 1 304 71666 genus 0 71667 304 1 0 species Waddlia chondrophila 0 phylum 134625 5 1391 1 1391 5 2 1921781 Kiritimatiellae 0 class Kiritimatiellales order 0 1 1389 17 4 1921782 Kiritimatiellaceae family 0 5 3 1 1372 1921783 Kiritimatiella 0 genus 1367 1 2 10 1921784 Kiritimatiella glycovorans 0 species 1357 1 1307763