members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 26012915 31 4693 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 27181 1 0 0 name 86 2 Bacteria superkingdom 0 25920606 1 4395 2725 0 phylum 6 200940 1 67799 Thermodesulfobacteria 6 1 0 class 2725 Thermodesulfobacteriales 188710 5 order 0 2724 1 5 4 0 family 2719 188711 genus 0 312 1 241192 171695 Thermodesulfatator indicus 0 312 species 1 1 284 0 genus 444090 1653476 Caldimicrobium thiodismutans 1 0 species 284 1740 2 0 genus 2123 Thermodesulfobacterium geofontis 1295609 1 species 0 1779 0 species 344 1 1741 Thermodesulfobacterium commune 2498710 4 552 0 clade 67814 0 552 phylum 4 1 4 0 552 class 2 693071 Caldisericia Caldisericales 693072 1 1 3 0 order 550 7 693073 Caldisericaceae 1 2 549 0 family 693074 0 genus 542 1 1 0 542 species Caldisericum exile 693075 0 phylum 57003 56 203691 56 1 0 57003 class Spirochaetia 203692 119 429 136 Spirochaetales 40 1 order 0 38772 Spirochaetaceae 434 137 30068 0 family 22 1 1 3 0 genus 2063 Spirochaeta 146 5 1 0 931 species 46355 Spirochaeta africana 1127 0 species 1 Spirochaeta thermophila 154 1616789 0 866 genus 1 Salinispira pacifica 1307761 866 0 species 1 1 4 genus 0 3626 Sphaerochaeta 399320 3 1 1567 0 species Sphaerochaeta globosa 1131703 Sphaerochaeta coccoides 273376 0 species 1088 1 1 species 0 968 1131707 Sphaerochaeta pleomorpha 1911556 1066 0 genus 1 Sediminispirochaeta smaragdinae 55206 1066 0 species 1 1 12 genus 0 22013 Treponema 1042 157 1 922 0 species Treponema caldarium 215591 Treponema putidum 221027 species 0 4039 1 0 species 181 1 53435 Treponema paraluiscuniculi 2638727 0 no rank 3234 1 1 species 0 3234 1539298 Treponema sp. OMZ 838 Treponema denticola 158 1 2113 0 species 1 0 914 species Treponema pedis 409322 167 Treponema succinifaciens 0 species 5108 1 Treponema azotonutricium 150829 1 0 1063 species species 0 2090 1 Treponema brennaborense 81028 Treponema primitia 88058 0 1123 species 1 Treponema pallidum 160 1 species 0 184 8275 0 family 1 17 Borreliaceae 9 1643685 1 8 4295 0 genus Borreliella 64895 151 64897 Borreliella bissettii 0 species 284 1 1 319 0 species 1674146 Borrelia mayonii Borreliella bavariensis 664662 0 376 species 1 62088 Borreliella valaisiana species 0 303 1 1272 0 species 1 Borreliella garinii 29519 29518 Borreliella afzelii 1125 0 species 1 1 0 465 species 139 Borreliella burgdorferi 1 8 0 3971 genus 138 34 Borrelia 1 species 0 564 140 Borrelia hermsii Borrelia anserina 143 1 species 0 542 Borrelia miyamotoi 47466 1 0 species 805 141 Borrelia parkeri 477 0 species 1 142 Borrelia turicatae 1 0 species 633 44449 Borrelia recurrentis 443 0 species 1 0 473 species 1 Borrelia duttonii 40834 order 0 4108 8 1643688 0 family 4108 1 8 Leptospiraceae 5 170 338321 1 genus 0 273 1 0 273 species Turneriella parva 29510 1 6 genus 0 3830 Leptospira 10 171 1 0 816 species 174 Leptospira borgpetersenii 28452 Leptospira alstonii 0 658 species 1 1 0 species 946 173 Leptospira interrogans 0 841 species 1 172 Leptospira biflexa 28183 Leptospira santarosai 1 0 559 species 0 14004 order 7 1 Brachyspirales 3 1643686 231 143786 Brachyspiraceae 0 14001 family 6 1 29521 288 Brachyspira genus 0 13770 5 1 159 Brachyspira hyodysenteriae 1 0 species 2966 2299 0 species 1 Brachyspira intermedia 84377 1 0 5542 species 52584 Brachyspira pilosicoli species 0 2675 1 Brachyspira murdochii 84378 1930617 4 1013 0 phylum 1962850 4 0 1013 class Calditrichales 4 1962852 order 0 1013 1 4 Calditrichaceae 1962854 2 0 1009 family 1 3 0 1007 genus 1 2 Caldithrix 187144 1 187145 Caldithrix abyssi 1 0 1006 species 1 0 331 phylum 2138240 2138243 331 0 class 1 1 0 331 order 2138246 2138247 0 331 family 1 1 genus 0 331 68335 331 0 species 1 Coprothermobacter proteolyticus 35786 0 phylum 2705 7 74152 641853 0 class 382 2 2 order 0 382 641854 641876 2 0 family 382 2 1 0 382 genus Elusimicrobium 423604 1 423605 Elusimicrobium minutum 1 species 0 381 4 0 class 1795 447830 order 0 1795 4 1783344 1783343 5 Endomicrobiaceae 0 1795 family 1 4 0 1790 genus 3 1 Endomicrobium 1408194 4 1 species 0 577 Candidatus Endomicrobium trichonymphae 1408204 1408281 Endomicrobium proavitum 0 species 1209 1 0 528 no rank 1 99260 species 0 528 1 167965 uncultured Termite group 1 bacterium 24 80283 0 phylum 32066 class 0 80283 24 1 Fusobacteriia 68 203490 1 23 80215 0 order 145 203491 Fusobacteriales 273 203492 Fusobacteriaceae 1 12 0 59779 family Ilyobacter 1 167639 0 genus 2029 1 2 1 0 2028 species 167642 Ilyobacter polytropus 9 1 57477 0 genus Fusobacterium 848 196 856 Fusobacterium varium 0 11355 species 1 859 Fusobacterium necrophorum 1 0 species 1254 1 species 0 11854 Fusobacterium periodonticum 860 Fusobacterium gonidiaformans 849 0 species 3045 1 861 Fusobacterium ulcerans 1 0 species 3630 Fusobacterium mortiferum 850 1 0 3276 species Fusobacterium nucleatum 851 0 17755 species 1 1 0 species 5112 1583098 Fusobacterium hwasookii 1129771 32 Leptotrichiaceae 0 20291 family 1 10 5 1 0 12398 genus 20 32067 Leptotrichia 1 0 species 3083 40542 Leptotrichia buccalis 3 no rank 0 9295 2633022 Leptotrichia sp. oral taxon 498 712368 0 2134 species 1 1 species 0 2239 1785996 Leptotrichia sp. oral taxon 847 712357 Leptotrichia sp. oral taxon 212 1 0 species 4922 1 2697 0 genus 168808 species 0 2697 1 Sneathia amnii 187101 1 2 genus 0 2828 Sebaldella 1 32068 Sebaldella termitidis 826 species 0 2827 1 0 2336 genus 1 34104 1 2336 0 species Streptobacillus moniliformis 34105 2323 3 0 no rank 1774 3 clade 0 1774 1783234 1 0 163 phylum 95818 0 no rank 163 1 1895827 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 0 species 163 1 2 clade 0 1611 95901 2497643 2 class 0 1611 2497644 2 order 0 1611 family 0 1611 2 2497645 Candidatus Babela 1 1551504 1 2 1611 0 genus 0 1610 species 1 Candidatus Babela massiliensis 673862 200783 24 0 phylum 6833 1 24 0 6833 class 187857 8 Aquificae 5735 0 order 1 19 32069 4 Aquificales 0 2578 family 1 6 Hydrogenothermaceae 224027 5 5 182899 Persephonella 1 2 0 605 genus 309805 Persephonella marina 0 species 600 1 1 212790 Sulfurihydrogenibium 3 1 0 genus 1968 1 0 species 513 309806 Sulfurihydrogenibium azorense 1 0 1454 no rank 2619248 species 0 1454 1 Sulfurihydrogenibium sp. YO3AOP1 436114 0 family 2860 1 11 Aquificaceae 1 64898 2 148 0 genus 75905 1 0 75 species 136094 Thermocrinis albus 1 0 73 species Thermocrinis ruber 75906 genus 0 2370 1 6 27 168657 Hydrogenobaculum 2343 0 no rank 5 2622382 1 species 0 478 547143 Hydrogenobaculum sp. 3684 478 0 species 1 Hydrogenobaculum sp. SHO 547145 Hydrogenobaculum sp. Y04AAS1 380749 0 431 species 1 1 478 0 species Hydrogenobaculum sp. HO 547144 Hydrogenobaculum sp. SN 547146 478 0 species 1 0 154 genus 1 2713 Aquifex aeolicus 63363 1 0 154 species genus 0 187 1 939 940 Hydrogenobacter thermophilus species 0 187 1 1 0 293 no rank 90150 412592 293 0 genus 1 293 0 species 1 412593 Thermosulfidibacter takaii 4 0 order 1090 1485951 1 558314 Desulfurobacteriaceae 0 1090 family 1 4 64159 1 0 798 genus 1 species 0 798 64160 Desulfurobacterium thermolithotrophum Thermovibrio 171868 1 2 1 0 genus 291 Thermovibrio ammonificans 228745 0 290 species 1 0 phylum 3840 9 200930 Deferribacteres 68337 2 3840 0 class 1 9 order 0 3838 1 8 191393 23 Deferribacterales family 0 3815 1 7 Deferribacteraceae 66 191394 545865 genus 0 752 1 477976 Calditerrivibrio nitroreducens species 0 752 1 2351 1 0 881 genus 1 0 species 881 2352 Flexistipes sinusarabici genus 0 1359 2 1 Deferribacter 53572 1 Deferribacter desulfuricans 197162 1358 0 species 1 2 1 genus 0 757 117999 3 Denitrovibrio 118000 Denitrovibrio acetiphilus 1 0 species 754 508458 0 5348 phylum 10 0 5348 class 1 10 Synergistia 649775 53 9 1 order 0 5295 Synergistales 649776 17 281 649777 Synergistaceae family 0 5278 1 8 336260 0 genus 439 1 1 0 species 439 336261 Thermovirga lienii 49894 185 0 genus 1 Acetomicrobium mobile 97477 0 species 185 1 2 81461 Thermanaerovibrio 0 495 genus 2 1 81462 Thermanaerovibrio acidaminovorans 1 species 0 493 81466 0 467 genus 1 81468 Aminobacterium colombiense 1 0 species 467 19 508459 Cloacibacillus 1 2 0 3411 genus 1197717 Cloacibacillus porcorum 1 0 3392 species 57723 20 7788 0 phylum 0 class 7140 1 17 Acidobacteriia 50 204432 0 1466 order 4 1 Solibacterales 332160 51 1 3 0 1415 family 8 332161 Solibacteraceae 332162 1 Candidatus Solibacter 2 1 0 genus 1407 species 0 1406 1 332163 Candidatus Solibacter usitatus 1 12 order 0 5624 204433 94 Acidobacteriales Acidobacteriaceae 204434 55 11 1 5530 0 family 1 3 genus 0 1712 4 940557 Granulicella 940615 Granulicella tundricola 0 species 879 1 1 0 829 species 940614 Granulicella mallensis 392733 2 Terriglobus 3 1 0 genus 2015 1 species 0 1290 Terriglobus roseus 392734 870903 Terriglobus saanensis 723 0 species 1 0 756 genus 2 1 658061 2 Candidatus Koribacter 1 species 0 754 658062 Candidatus Koribacter versatilis 33973 2 Acidobacterium 992 0 genus 2 1 species 0 990 1 33075 Acidobacterium capsulatum Blastocatellia 1562566 3 648 0 class 3 1 458032 17 Chloracidobacterium 1 2 645 0 genus Chloracidobacterium thermophilum 458033 species 0 628 1 40117 14 0 phylum 3942 3942 0 class 1 14 12 203693 Nitrospira 13 1 0 3930 order Nitrospirales 41 189778 Nitrospiraceae 189779 11 1 12 family 0 3889 179 1 Leptospirillum 0 genus 718 1 4 261385 257 0 species group 1 1660083 Leptospirillum sp. Group II 'CF-1' 1 species 0 257 261386 1 0 230 species group Leptospirillum ferriphilum 178606 species 0 230 1 1 0 species group 230 655606 1 230 0 species Leptospirillum ferrooxidans 180 Thermodesulfovibrio 28261 2 2 1 0 genus 1099 0 species 1097 1 Thermodesulfovibrio yellowstonii 28262 Nitrospira 1234 9 1 5 0 genus 2061 0 species 370 1 1325564 Nitrospira japonica 1 0 422 species 330214 Nitrospira defluvii 1 443 0 species 1715989 Candidatus Nitrospira inopinata 1 817 0 species Nitrospira moscoviensis 42253 200918 43 phylum 0 19098 class 0 19098 1 43 188708 33 Thermotogae 0 order 7024 1 8 3 1643947 Petrotogales 1643949 0 7021 family 7 1511648 4 Defluviitoga 2 1 genus 0 767 0 species 763 1 1006576 Defluviitoga tunisiensis 160798 22 Marinitoga 3 1 5131 0 genus 149715 Marinitoga piezophila 1 0 2554 species 2640159 0 2555 no rank 1 species 0 2555 1 1545835 Marinitoga sp. 1137 2 1 genus 0 1123 Petrotoga 2 28236 69499 Petrotoga mobilis 1 1121 0 species Thermotogales 2419 10 28 1 0 order 10879 Fervidobacteriaceae 1643950 7 5297 0 family 1 10 Fervidobacterium 2422 3 genus 0 1574 4 1 Fervidobacterium nodosum 2424 0 565 species 1 1 634 0 species 93466 Fervidobacterium pennivorans species 0 372 1 2423 Fervidobacterium islandicum 2420 9 Thermosipho 1 5 3716 0 genus Thermosipho africanus 2421 0 species 1222 1 0 1483 no rank 2 2676525 Thermosipho sp. 1070 1437364 1 744 0 species Thermosipho sp. 1063 1462747 1 0 species 739 1002 0 species 1 Thermosipho melanesiensis 46541 Thermotogaceae 188709 21 5572 0 family 17 1 1 5 0 2069 genus 61 1643951 Pseudothermotoga Pseudothermotoga hypogea 57487 1 0 504 species 38322 Pseudothermotoga elfii species 0 588 1 119394 Pseudothermotoga thermarum 0 323 species 1 177758 Pseudothermotoga lettingae 1 0 species 593 1 11 0 genus 3482 92 2335 Thermotoga Thermotoga naphthophila 93930 331 0 species 1 1508419 Thermotoga caldifontis 0 340 species 1 1 0 species 352 93929 Thermotoga petrophila 4 0 1151 no rank 2631113 Thermotoga sp. RQ7 126738 269 0 species 1 0 287 species 1 Thermotoga sp. RQ2 126740 1 species 0 290 Thermotoga sp. Cell2 1157947 1 305 0 species Thermotoga sp. 2812B 1157948 Thermotoga maritima 2336 1 272 0 species species 0 331 1 Thermotoga neapolitana 2337 0 613 species 1 1508420 Thermotoga profunda 6 1643946 Kosmotogales 0 1162 order 1 6 Kosmotogaceae 1643948 1 5 1 1156 0 family 1 0 genus 352 1184396 species 0 352 1 1184387 Mesotoga prima Kosmotoga 1 651456 3 1 genus 0 803 0 320 species 1 651457 Kosmotoga olearia Kosmotoga pacifica 1330330 1 0 species 482 1783270 clade 0 4554468 360 142182 8 0 3063 phylum Gemmatimonadetes 219685 4 3063 0 class 8 1 Gemmatimonadales 219686 109 1 7 0 order 3059 0 2950 family 6 1 Gemmatimonadaceae 14 219687 4 173479 Gemmatimonas 1307 0 genus 3 1 Gemmatimonas phototrophica 1379270 1 655 0 species Gemmatimonas aurantiaca 173480 1 0 species 648 1 2 0 1629 genus 1706036 10 Gemmatirosa 861299 Gemmatirosa kalamazoonesis 1 0 species 1619 1445 0 phylum 4 65842 204430 4 0 1445 class 0 order 1445 1 4 1 218872 Fibrobacterales 1444 0 family 1 3 Fibrobacteraceae 204431 2 832 2 Fibrobacter 0 1442 genus 2 1 Fibrobacter succinogenes 833 0 1440 species 1 456828 2 817 0 phylum 0 genus 817 2 1 4 456826 Candidatus Cloacimonas 0 species 813 1 456827 Candidatus Cloacimonas acidaminovorans 0 clade 4549143 346 68336 2122 0 phylum 5 1134404 0 class 2122 1 5 5 795747 Ignavibacteria 795748 order 0 2117 4 1334117 2 family 0 685 685 0 genus 2 1 1134403 1 Melioribacter 1134405 Melioribacter roseus 684 0 species 1 Ignavibacteriaceae 795749 3 2 1 0 family 1432 1429 0 genus 1 795750 1 0 1429 species 591197 Ignavibacterium album 1090 21 10533 0 phylum class 0 10533 21 1 191410 40 Chlorobia 39 191411 Chlorobiales 10493 0 order 20 1 Chlorobiaceae 19 191412 0 10454 family 19 1 1 4 3392 0 genus 256319 28 Chlorobaculum 1 0 1304 species Chlorobaculum limnaeum 274537 Chlorobaculum parvum 274539 1 0 species 1410 1097 Chlorobaculum tepidum 0 species 650 1 0 genus 656 1 100715 species 0 656 1 Chloroherpeton thalassium 100716 12 1101 Prosthecochloris 5 1 1929 0 genus 1102 Prosthecochloris aestuarii 0 species 390 1 2632826 3 no rank 0 1527 Prosthecochloris sp. GSB1 281093 0 616 species 1 1 0 503 species Prosthecochloris sp. CIB 2401 1868325 species 0 408 1 Prosthecochloris sp. HL-130-GSB 1974213 274493 8 4458 0 no rank 1099 4 Pelodictyon 0 1947 genus 1 3 Pelodictyon phaeoclathratiforme 34090 1 653 0 species 1 0 1290 species 1100 Pelodictyon luteolum Chlorobium 15 1091 0 2511 genus 5 1 0 species 246 1 337090 Chlorobium chlorochromatii Chlorobium limicola 1092 1 813 0 species 1 0 species 490 1094 Chlorobium phaeovibrioides 1 0 species 947 1096 Chlorobium phaeobacteroides Bacteroidetes 69 976 0 4536488 phylum 1 320 5333 0 order 1 7 107 1100069 Bacteroidetes Order II. Incertae sedis 0 family 5226 1 6 563843 41 Rhodothermaceae 29548 15 Rhodothermus 0 genus 2178 2 1 29549 Rhodothermus marinus 1 2163 0 species 1196022 1 no rank 0 2067 2067 0 species 1 Rhodothermaceae bacterium RA 1779382 Salinibacter 16 146918 2 1 0 genus 940 0 species 924 1 146919 Salinibacter ruber 146 1 140502 0 class Flavobacteriia 117743 94 200644 139 Flavobacteriales 1 145 0 140408 order 0 family 554 2 1333713 2 1 genus 0 554 Owenweeksia 267986 4 253245 Owenweeksia hongkongensis 1 550 0 species 4 1755828 Ichthyobacteriaceae 648 0 family 1 2 1755829 1 0 genus 644 0 species 644 1 242600 Ichthyobacterium seriolicida 1186 49546 Flavobacteriaceae family 0 95956 1 102 Gramella 292691 6 5 1 0 2786 genus 0 684 species 1 Gramella flava 1486245 Gramella sp. SH35 2126553 0 706 species 1 0 species 734 1 411153 Gramella forsetii 1 0 species 656 1913577 Gramella sp. LPB0144 178469 1 850 0 genus Arenibacter algicola 616991 1 0 species 850 61432 2 2083 0 no rank Flavobacteriaceae bacterium UJ101 1150389 1 0 1519 species 1 0 species 564 Flavobacteriaceae bacterium 3519-10 531844 1 0 genus 611 389486 2648869 0 no rank 611 1 0 611 species 1 1453352 Sediminicola sp. YIK13 1176327 1 genus 0 360 0 no rank 360 1 2636237 1 species 0 360 Aureitalea sp. RR4-38 2094025 336276 2094 0 genus 1 2615019 1 0 no rank 2094 2058135 Olleya sp. Bg11-27 1 2094 0 species Salegentibacter 143222 2 0 genus 1014 2 1 1 0 1012 no rank 2633436 0 species 1012 1 1729720 Salegentibacter sp. T436 1 1323 0 genus 2700084 1850246 Lutibacter sp. LPB0138 species 0 1323 1 0 genus 12506 1 9 Flavobacterium 237 25 996 Flavobacterium columnare 0 species 1888 1 1 0 species 895 1492737 Flavobacterium gilvum 1 1348 0 species Flavobacterium commune 1306519 1763534 Flavobacterium crassostreae 0 species 1476 1 1 3289 0 species 986 Flavobacterium johnsoniae 1 0 1031 species Flavobacterium indicum 312277 1 0 961 species 55197 Flavobacterium branchiophilum 1 0 species 1593 96345 Flavobacterium psychrophilum 1361 0 genus 2 1 Zunongwangia 417127 2 398743 Zunongwangia profunda species 0 1359 1 83612 genus 0 749 1 57029 Psychroflexus torquis species 0 749 1 Zobellia 112040 5 593 0 genus 1 2 63186 Zobellia galactanivorans species 0 588 1 genus 0 888 1 1649495 2622645 0 888 no rank 1 Seonamhaeicola sp. S2-3 1936081 species 0 888 1 0 7425 genus 1 6 9 52959 Polaribacter Polaribacter reichenbachii 996801 0 species 1570 1 196858 3 0 no rank 3887 0 1203 species 1 Polaribacter sp. BM10 1529069 1 species 0 1247 Polaribacter sp. MED152 313598 Polaribacter sp. ALD11 2058137 1 0 1437 species 1 0 species 1959 1774273 Polaribacter vadi 0 7907 genus 5 1 Myroides 61 76831 2642485 2 2559 0 no rank 1583100 Myroides sp. A21 0 1264 species 1 Myroides sp. ZB35 1458492 1 0 1295 species 1 0 3959 species Myroides odoratimimus 76832 Myroides profundi 480520 1 species 0 1328 104267 57 Tenacibaculum genus 0 5631 1 5 1 0 species 976 Tenacibaculum dicentrarchi 669041 Tenacibaculum jejuense 584609 1 species 0 2298 1850252 Tenacibaculum todarodis 1 0 1461 species 107401 Tenacibaculum maritimum 839 0 species 1 Formosa 225842 2 1 3 0 genus 856 no rank 0 854 2 2644710 Formosa sp. Hel1_33_131 1336794 1 species 0 410 0 species 444 1 Formosa sp. Hel3_A1_48 1336795 0 genus 689 1 393005 689 0 species 1 Tamlana sp. UJ94 2069432 2 1 0 genus 1785 Flavivirga 1209327 7 1803846 Flavivirga eckloniae species 0 1778 1 865 0 genus 1 216431 1 0 865 species 313588 Croceibacter atlanticus Lacinutrix 291183 7 1 4 0 genus 3474 2 2394 0 no rank 2647285 0 1195 species 1 983544 Lacinutrix sp. 5H-3-7-4 Lacinutrix sp. Bg11-31 2057808 1 0 1199 species Lacinutrix venerupis 1486034 0 species 1073 1 5534 0 genus 4 1 Dokdonia 4 326319 0 no rank 4621 2 2615033 3470 0 species 1 313590 Dokdonia sp. MED134 Dokdonia sp. 4H-3-7-5 983548 1 0 1151 species Dokdonia donghaensis 326320 0 species 909 1 1204360 0 1090 genus 1 0 species 1090 1 Siansivirga zeaxanthinifaciens 762954 363408 5 Nonlabens 1 5 2257 0 genus 0 species 564 1 Nonlabens sediminis 319236 2 0 1139 no rank 2615035 523 0 species 1 Nonlabens sp. MIC269 1476901 2058134 Nonlabens sp. MB-3u-79 616 0 species 1 species 0 549 1 328515 Nonlabens dokdonensis 22 1016 Capnocytophaga 1 15 0 genus 9502 1017 Capnocytophaga gingivalis 1 species 0 479 6 3769 0 no rank 2640652 1 0 species 633 Capnocytophaga sp. H2931 1945657 1316596 Capnocytophaga sp. oral taxon 878 1 1159 0 species 1 404 0 species 1316593 Capnocytophaga sp. oral taxon 864 Capnocytophaga sp. oral taxon 323 1705617 1 337 0 species 1945658 Capnocytophaga sp. H4358 species 0 600 1 Capnocytophaga sp. ChDC OS43 209053 0 species 636 1 45243 Capnocytophaga haemolytica 1 0 species 476 0 species 360 1 1018 Capnocytophaga ochracea Capnocytophaga leadbetteri 327575 1 0 1086 species 0 711 species 1 1848904 Capnocytophaga stomatis Capnocytophaga cynodegmi 28189 1 711 0 species 917 0 species 1 Capnocytophaga canimorsus 28188 1 0 species 971 Capnocytophaga sputigena 1019 2 0 genus 974 111500 1 485 0 species 516051 Muricauda lutaonensis 1 0 489 species 111501 Muricauda ruestringensis 1518147 0 genus 1528 1 Wenyingzhuangia fucanilytica 1790137 1528 0 species 1 286104 genus 0 1719 2 2615021 2 0 1719 no rank Winogradskyella sp. J14-2 1936080 species 0 646 1 Winogradskyella sp. PG-2 754409 1073 0 species 1 genus 0 527 1 2 Aequorivita 1 153265 0 species 526 1 Aequorivita sublithincola 101385 Maribacter 14 252356 1 5 0 genus 6942 1178778 Maribacter cobaltidurans species 0 1765 1 5163 0 no rank 3 2615042 1836467 Maribacter sp. T28 1 0 1788 species 1 species 0 2681 Maribacter sp. 1_2014MBL_MicDiv 1644130 1 694 0 species Maribacter sp. HTCC2170 313603 252306 1 0 genus 510 Robiginitalea biformata 252307 510 0 species 1 genus 0 1304 1 261827 1 1304 0 species 1736674 Algibacter alginicilyticus 358023 4 Lutibacter 0 genus 1627 1 2 species 0 1623 1 Lutibacter profundi 1622118 104264 3 Cellulophaga 4 1 0 5406 genus Cellulophaga algicola 59600 species 0 1213 1 Cellulophaga baltica 76594 1 1394 0 species 979 Cellulophaga lytica 1 2796 0 species 1853230 7 Crocinitomicaceae 0 4205 family 3 1 332102 21 Fluviicola genus 0 4198 1 2 191579 Fluviicola taffensis 1 0 4177 species 39782 1 Blattabacteriaceae 1 10 3100 0 family 0 3099 genus 1 9 Blattabacterium 34098 22 164514 Blattabacterium punctulatus 0 583 species 1 no rank 0 1776 6 2647581 624186 Blattabacterium sp. (Blattella germanica) 1 251 0 species 367488 Blattabacterium sp. (Periplaneta americana) 1 0 187 species Blattabacterium sp. (Nauphoeta cinerea) 1316444 352 0 species 1 0 346 species 1 Blattabacterium sp. (Mastotermes darwiniensis) 39768 Blattabacterium sp. (Blatta orientalis) 367806 1 126 0 species 1 species 0 514 1186051 Blattabacterium sp. (Blaberus giganteus) 1 718 0 species 1653831 Blattabacterium cuenoti 313602 3 0 624 no rank 1940138 genus 0 121 1 0 species 121 1 Candidatus Walczuchella monophlebidarum 1415657 0 genus 503 1 2 Candidatus Sulcia 336809 1 502 0 species 1 336810 Candidatus Sulcia muelleri 2762318 22 family 0 35182 50 308865 Elizabethkingia 1 6 0 8939 genus 0 species 1833 1 172045 Elizabethkingia miricola 0 1514 species 1 238 Elizabethkingia meningoseptica Elizabethkingia genomosp. 4 1756150 1034 0 species 1 1117645 Elizabethkingia anophelis 1 3266 0 species 1756149 Elizabethkingia genomosp. 3 species 0 1242 1 1 34084 Riemerella 2 1 0 1786 genus Riemerella anatipestifer 34085 0 species 1785 1 10 0 14717 no rank 2782232 28 59732 Chryseobacterium 1 9 0 genus 13215 2593645 4120 0 no rank 3 1721091 Chryseobacterium sp. IHB B 17019 1 0 1233 species 1 1385 0 species 2015076 Chryseobacterium sp. T16E-39 Chryseobacterium sp. StRB126 878220 0 species 1502 1 Chryseobacterium indologenes 253 0 2828 species 1 Chryseobacterium piperi 558152 0 species 1249 1 Chryseobacterium gallinarum 1324352 1 2382 0 species 1 species 0 939 1265445 Chryseobacterium camelliae 1 species 0 1669 Chryseobacterium glaciei 1685010 2782228 genus 0 1502 1 Chryseobacterium taklimakanense 536441 1 species 0 1502 2 1 genus 0 729 Weeksella 1013 1 728 0 species 1 Weeksella virosa 1014 Ornithobacterium 28250 28 genus 0 9011 1 2 28251 Ornithobacterium rhinotracheale 0 8983 species 1 0 16892 class 1 24 18 117747 Sphingobacteriia Sphingobacteriales 200666 29 0 16874 order 1 23 Sphingobacteriaceae 84566 66 0 16845 family 1 22 1 6 5132 0 genus 28453 9 Sphingobacterium 4 4353 0 no rank 2609468 Sphingobacterium sp. 21 743722 1 0 species 846 Sphingobacterium sp. G1-14 2003121 1 0 species 1149 1933220 Sphingobacterium sp. B29 1 1070 0 species Sphingobacterium sp. ML3W 1538644 0 1288 species 1 species 0 770 1 Sphingobacterium mizutaii 1010 1 no rank 0 1206 84568 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1206 species 1 1 6 0 5292 genus Pedobacter 18 84567 430522 Pedobacter steynii species 0 1200 1 Pedobacter heparinus 984 1 0 species 825 1 0 species 1070 363852 Pedobacter ginsengisoli 1067 0 no rank 1 2628915 Pedobacter sp. PACM 27299 1727164 1 species 0 1067 species 0 1112 1 188932 Pedobacter cryoconitis genus 0 1328 2 1 3 1649482 Pseudopedobacter 0 1325 species 1 151895 Pseudopedobacter saltans 1332 0 genus 2 1 Solitalea 1 929509 1 0 species 1331 995 Solitalea canadensis Mucilaginibacter 3 423349 1 4 genus 0 2489 687 0 no rank 1 2617802 0 687 species 1 1300914 Mucilaginibacter sp. PAMC 26640 1133 0 species 1 1550579 Mucilaginibacter gotjawali Mucilaginibacter sp. BJC16-A31 1234841 1 species 0 666 0 4328266 class 1 65 Bacteroidia 149 200643 1 7 0 order 4076 Marinilabiliales 1970189 3 1 0 family 1412 1573805 0 1412 genus 1 2060722 0 species 1412 1 1717717 Marinifilaceae bacterium SPP2 1 family 0 629 1970190 1970191 0 629 genus 1 Salinivirga cyanobacteriivorans 1307839 species 0 629 1 0 family 1300 2 1 Prolixibacteraceae 1471398 12 1 1288 0 genus 1471399 Draconibacterium orientale 1168034 1288 0 species 1 0 732 family 2 1 Marinilabiliaceae 2 558415 1193324 1 730 0 genus 889453 Alkalitalea saponilacus 1 0 730 species 57 1 0 order 4324041 1109 171549 Bacteroidales 171551 7 Porphyromonadaceae 4 1 family 0 3042 Porphyromonas 836 1 0 3035 genus 3 1 Porphyromonas asaccharolytica 28123 species 0 896 1 837 Porphyromonas gingivalis 1 0 species 2138 Bacteroidaceae 815 32 0 family 1577908 11 1 816 27717 Bacteroides 0 1577876 genus 1 10 1 30963 0 species Bacteroides heparinolyticus 28113 species 0 294220 1 1796613 Bacteroides caecimuris 1 species 0 533017 28116 Bacteroides ovatus 0 27183 species 1 Bacteroides zoogleoformans 28119 246787 Bacteroides cellulosilyticus 1 species 0 62134 Bacteroides caccae 47678 0 species 38338 1 0 208683 species 1 818 Bacteroides thetaiotaomicron Bacteroides fragilis 817 species 0 314078 1 Bacteroides helcogenes 290053 0 41543 species 1 Paludibacteraceae 9 2005523 0 family 1097 3 1 346096 1 Paludibacter 0 1088 genus 1 2 185300 Paludibacter propionicigenes species 0 1087 1 1853231 0 family 22308 1 283168 22308 0 genus 1 0 22308 species 1 Odoribacter splanchnicus 28118 333046 0 2348397 no rank 5 909656 genus 0 2347387 3 1 0 species 389647 357276 Bacteroides dorei 21428 0 species 1 Bacteroides salanitronis 376805 Bacteroides vulgatus 821 1 0 1936312 species 511434 2 Candidatus Azobacteroides 2 1 0 1010 genus 0 species 1008 1 511435 Candidatus Azobacteroides pseudotrichonymphae 5 1 0 22548 family 171550 8 Rikenellaceae 0 genus 640 1 2 1 1611681 Mucinivorans 1 0 species 639 Mucinivorans hirudinis 1433126 21900 0 genus 1 2 18 239759 Alistipes 0 21882 species 1 Alistipes finegoldii 214856 no rank 0 664 1 185291 Bacteroidales bacterium CF 1400053 1 0 664 species 2005520 2 Dysgonamonadaceae 5 1 0 5597 family 307628 0 genus 1552 1 1 1552 0 species 1642646 Petrimonas mucosa 2 1 0 2532 genus 294702 1 Proteiniphilum 0 species 2531 1 1642647 Proteiniphilum saccharofermentans genus 0 1511 1 1784836 Fermentimonas caenicola 1562970 1511 0 species 1 1 11 family 0 68092 Prevotellaceae 171552 8 89 838 Prevotella 1 10 genus 0 68084 Prevotella denticola 28129 1 1719 0 species 589436 Prevotella fusca 1 0 1782 species Prevotella dentalis 52227 1 0 2838 species species 0 1585 1 Prevotella jejuni 1177574 1 species 0 1052 Prevotella enoeca 76123 0 2544 species 1 Prevotella ruminicola 839 1 0 species 53710 28131 Prevotella intermedia 0 species 1800 1 28132 Prevotella melaninogenica 2638335 0 965 no rank 1 Prevotella sp. oral taxon 299 652716 1 0 species 965 Tannerellaceae 2005525 41 1 7 227362 0 family Parabacteroides 375288 40 1 3 0 genus 219323 823 Parabacteroides distasonis 0 species 74911 1 2649774 no rank 0 144372 1 Parabacteroides sp. CT06 2025876 0 species 144372 1 Tannerella 195950 2 3 1 0 7998 genus Tannerella forsythia 28112 1 5898 0 species 2620507 no rank 0 2098 1 712710 Tannerella sp. oral taxon HOT-286 1 0 2098 species 0 45917 family 1 3 Barnesiellaceae 2005519 6 1 2 45911 0 genus Barnesiella 397864 37 0 45874 species 1 Barnesiella viscericola 397865 34359 0 class 1 55 Cytophagia 768503 95 1 54 order 0 34264 Cytophagales 768507 148 3 1501348 Amoebophilaceae 0 824 family 1 4 1 273135 Candidatus Cardinium 1 2 genus 0 367 2641185 0 no rank 366 1 Cardinium endosymbiont of Encarsia pergandiella 249402 1 0 species 366 281119 1 454 0 genus 454 0 species 1 Candidatus Amoebophilus asiaticus 281120 Cytophagaceae 89373 21 0 family 7602 1 15 319458 1 Leadbetterella 2 1 0 genus 774 1 773 0 species 316068 Leadbetterella byssophila 0 957 genus 1 120831 Dyadobacter fermentans 94254 1 957 0 species Cytophaga 978 11 2 1 0 1089 genus Cytophaga hutchinsonii 985 species 0 1078 1 1 6 0 genus 3211 Spirosoma 107 12 0 species 709 1 2057025 Spirosoma sp. HA7 480 0 species 1 Spirosoma aerolatum 1211326 1178516 Spirosoma montaniterrae species 0 683 1 683 0 species 1 Spirosoma radiotolerans 1379870 1 0 species 644 Spirosoma rigui 564064 861914 1 genus 0 557 2620963 0 557 no rank 1 Fibrella sp. ES10-3-2-2 1834519 1 0 species 557 2 1 993 0 genus Runella 105 2 Runella slithyformis 106 1 species 0 991 6 563798 Cyclobacteriaceae 1 7 3905 0 family 390846 1 0 884 genus Echinicola vietnamensis 390884 1 species 0 884 4 232244 Belliella 2 1 0 genus 751 232259 Belliella baltica 747 0 species 1 1 567 0 genus 246875 1 species 0 567 Algoriphagus sp. M8-2 1727163 68288 2 genus 0 1697 species 0 761 1 320787 Cyclobacterium amurskyense 936 0 species 1 104 Cyclobacterium marinum 40 1853232 Hymenobacteraceae 0 family 14796 1 16 1 8 10036 0 genus 93 89966 Hymenobacter 1446467 Hymenobacter swuensis 1 species 0 1195 0 2034 species 1 Hymenobacter sedentarius 1411621 5 no rank 0 6714 2615202 1356852 Hymenobacter sp. APR13 0 1763 species 1 species 0 1812 1 1484118 Hymenobacter sp. PAMC 26628 1 species 0 1636 1484116 Hymenobacter sp. PAMC 26554 1385663 Hymenobacter sp. DG25A 623 0 species 1 0 species 880 1 Hymenobacter sp. DG25B 1385664 2738 0 genus 1 3 323449 11 Pontibacter 1 0 1131 species Pontibacter korlensis 400092 0 1596 species 1 388950 Pontibacter akesuensis 0 genus 1982 4 1 Rufibacter 20 1379908 2 no rank 0 1244 2639626 Rufibacter sp. DG15C 1379909 0 599 species 1 1 0 645 species Rufibacter sp. DG31D 1379910 1 718 0 species Rufibacter tibetensis 512763 1 1853234 Persicobacteraceae family 0 1146 1 3 Persicobacter 7 59740 1145 0 genus 2 1 no rank 0 1138 1 2664020 Persicobacter sp. JZB09 1085624 1138 0 species 1 2 1 1717 0 family 8 1937968 Bernardetiaceae 1 1709 0 genus 1937972 Bernardetia litoralis 999 0 species 1709 1 12 200667 Flammeovirgaceae 1 4 0 family 3055 Flammeovirga 59739 10 1 2 0 1872 genus 2637820 0 1862 no rank 1 Flammeovirga sp. MY04 1191459 1 0 1862 species 340671 0 1171 no rank 1 Flammeovirgaceae bacterium 311 1257021 1 species 0 1171 2762301 2 1071 0 family 869806 13 Marivirga genus 0 1071 1 2 1 0 species 1058 Marivirga tractuosa 1006 Chitinophagia 9 1853228 0 class 9706 1 14 0 order 9697 1 13 Chitinophagales 22 1853229 9675 0 family 1 12 39 563835 Chitinophagaceae 379899 2 Niabella 0 4386 genus 3 1 Niabella soli 446683 1 3504 0 species Niabella ginsenosidivorans 1176587 species 0 880 1 1 997 0 genus 649460 Filimonas lacunae 477680 0 species 997 1 0 genus 1004 1 2 Niastella 5 354354 Niastella koreensis 354356 0 999 species 1 398041 1 640 0 genus 1 640 0 species Flavisolibacter tropicus 1492898 0 genus 619 1 1769012 2636138 no rank 0 619 1 1 0 619 species Arachidicoccus sp. BS20 1850526 Chitinophaga 2 79328 1 3 1990 0 genus 647 0 species 1 Chitinophagaceae bacterium 13 2029983 79329 Chitinophaga pinensis 1341 0 species 1 Saprospiria 1937959 4 1 8 1361 0 class order 0 1357 7 1 Saprospirales 1936988 2 1937961 2 Haliscomenobacteraceae 3 1 0 922 family 6 2349 Haliscomenobacter 1 2 genus 0 920 2350 Haliscomenobacter hydrossis 1 0 species 914 1 3 0 family 433 89374 1 Saprospiraceae 432 0 genus 2 1 1007 1 Saprospira 1008 Saprospira grandis 1 431 0 species 0 phylum 2123233 1 2005 Proteobacteria 756 1224 230114 0 subphylum 198 68525 1 126 class 0 114820 333 28221 Deltaproteobacteria 397 69541 Desulfuromonadales 0 23945 order 24 1 family 0 15883 1 14 Geobacteraceae 213422 125 326 28231 Geobacter 0 genus 14578 11 1 Geobacter sulfurreducens 35554 1 1179 0 species 2 no rank 0 3497 2627627 1 0 species 1647 Geobacter sp. M21 443144 443143 Geobacter sp. M18 0 1850 species 1 0 1086 species 1 351604 Geobacter uraniireducens Geobacter daltonii 1203471 1 1179 0 species Geobacter lovleyi 313985 1 1565 0 species 0 1491 species 1 225194 Geobacter bemidjiensis 1 1572 0 species 1340425 Geobacter anodireducens Geobacter metallireducens 28232 0 949 species 1 Geobacter pickeringii 345632 1734 0 species 1 genus 0 1180 1 2 392332 1 Geoalkalibacter 1 species 0 1179 483547 Geoalkalibacter subterraneus 9 1 0 7665 family 115 213421 Desulfuromonadaceae 0 genus 2717 3 1 890 35 Desulfuromonas 1 0 species 1272 Desulfuromonas soudanensis 1603606 1 0 no rank 1410 2614637 1823759 Desulfuromonas sp. DDH964 1 1410 0 species 4833 0 genus 1 5 35 18 Pelobacter Pelobacter propionicus 29543 0 species 1886 1 0 no rank 932 1 2620299 1842532 Pelobacter sp. SFB93 species 0 932 1 19 Pelobacter carbinolicus 0 794 species 1 Pelobacter acetylenicus 29542 1 0 1186 species 1 10 order 0 3520 213462 42 Syntrophobacterales Syntrophaceae 213468 4 0 2052 family 1 6 1 2 genus 0 600 1 60892 Desulfobacca 60893 Desulfobacca acetoxidans 0 599 species 1 Syntrophus 43773 1 781 0 genus 1 2 Syntrophus aciditrophicus 316277 1 780 0 species 2357 1 0 667 genus species 0 667 1 2358 Desulfomonile tiedjei Syntrophobacteraceae 8 213465 1 3 0 1426 family 8 29526 Syntrophobacter 2 1 0 1418 genus 119484 Syntrophobacter fumaroxidans 1 0 1410 species Myxococcales 29 456 38 1 0 42419 order 80812 0 7033 suborder 8 0 family 6230 5 1 40 49 Polyangiaceae Sorangium 39643 38 1 2 0 4827 genus 4789 0 species 1 56 Sorangium cellulosum 0 1363 genus 1 2 50 6 Chondromyces 1 0 1357 species Chondromyces crocatus 52 Sandaracinaceae 3 1055686 1 3 0 803 family 1055688 38 Sandaracinus 800 0 genus 1 2 927083 Sandaracinus amylolyticus 1 0 species 762 224462 3 0 2188 suborder 20 224464 Kofleriaceae 1 3 family 0 2188 25 162027 Haliangium 2168 0 genus 2 1 1 0 species 2143 Haliangium ochraceum 80816 26 suborder 0 32742 80811 Vulgatibacteraceae 1524213 10 1 3 0 family 1241 0 genus 1231 1 2 1524214 31 Vulgatibacter 1200 0 species 1 1391653 Vulgatibacter incomptus 1524215 62 Anaeromyxobacteraceae 0 6052 family 5 1 Anaeromyxobacter 161492 256 0 genus 5990 4 1 1 0 2653 species 161493 Anaeromyxobacter dehalogenans 2620896 2 3081 0 no rank 447217 Anaeromyxobacter sp. K 0 species 1565 1 0 species 1516 1 404589 Anaeromyxobacter sp. Fw109-5 9 1 family 0 10195 Archangiaceae 39 157 0 genus 2156 2 1 18 44 Melittangium Melittangium boletus 83453 1 2138 0 species Archangium 9 47 1 2 genus 0 2840 Archangium gephyra 48 0 species 2831 1 2 1 0 genus 2562 Stigmatella 40 54 0 2508 species 1 Stigmatella aurantiaca 41 Cystobacter 18 42 1 2 genus 0 2480 Cystobacter fuscus 43 0 species 2462 1 0 15254 family 9 1 31 62 Myxococcaceae 1 5 genus 0 10440 Myxococcus 579 32 1 species 0 2112 1297742 Myxococcus hansupus 0 2196 species 1 Myxococcus stipitatus 83455 Myxococcus fulvus 33 1 0 3877 species Myxococcus xanthus 34 1 1676 0 species Corallococcus 132 83461 3 1 0 4752 genus 35 Myxococcus macrosporus 2215 0 species 1 1 2405 0 species 184914 Corallococcus coralloides 1 18 8398 0 order Desulfobacterales 122 213118 8 1 0 family 3605 213121 20 Desulfobulbaceae 1 2 0 genus 1110 893 1 Desulfobulbus 1986146 Desulfobulbus sp. ORNL 1 1109 0 species 0 1109 genus 1 2 Desulfurivibrio 8 427922 species 0 1101 1 427923 Desulfurivibrio alkaliphilus 2 1 genus 0 815 53318 3 Desulfocapsa 1 0 species 812 65555 Desulfocapsa sulfexigens 551 0 genus 1 109168 84980 Desulfotalea psychrophila species 0 551 1 Desulfobacteraceae 8 213119 0 4671 family 1 9 Desulfatibacillum 218207 4 1 2 genus 0 1032 Desulfatibacillum alkenivorans 259354 1 0 species 1028 0 887 genus 1 2295 2296 Desulfobacterium autotrophicum 1 0 species 887 896 4 Desulfococcus genus 0 1866 1 3 Desulfococcus multivorans 897 784 0 species 1 species 0 1078 1 Desulfococcus oleovorans 181663 1 2 878 0 genus Desulfobacula 28222 1 Desulfobacula toluolica 28223 species 0 877 1 1 213113 Desulfurellales 6 1 0 order 1216 family 0 1215 5 1 Desulfurellaceae 2 117942 2 84404 Hippea 1 2 0 genus 457 84405 Hippea maritima 455 0 species 1 0 756 genus 2 1 Desulfurella 33001 1 1 species 0 755 33002 Desulfurella acetivorans 0 32845 order 1 25 310 213115 Desulfovibrionales 1 4 0 3057 family Desulfomicrobiaceae 213116 77 0 genus 2980 3 1 35 898 Desulfomicrobium species 0 1548 1 899 Desulfomicrobium baculatum 132132 Desulfomicrobium orale 0 1397 species 1 213117 1 Desulfohalobiaceae 0 family 490 1 3 1 2 489 0 genus 45662 2 Desulfohalobium 45663 Desulfohalobium retbaense 1 0 species 487 Desulfovibrionaceae 309 194924 0 28988 family 1 17 2582840 1 genus 0 1469 1 1469 0 species Desulfovibrio africanus 873 genus 0 5044 1 4 64 2035811 Pseudodesulfovibrio 0 species 2296 1 1716143 Pseudodesulfovibrio indicus species 0 1983 1 182210 Pseudodesulfovibrio aespoeensis 0 species 701 1 57320 Pseudodesulfovibrio profundus 1 904 0 genus 41707 29546 Lawsonia intracellularis 1 904 0 species 2794998 0 977 genus 1 Desulfovibrio salexigens 880 1 0 species 977 872 243 Desulfovibrio genus 0 20285 1 9 0 no rank 1101 1 2593640 Desulfovibrio sp. G11 631220 1101 0 species 1 184917 Desulfovibrio magneticus 1 0 2414 species 0 species 3711 1 876 Desulfovibrio desulfuricans 0 species 466 1 1725232 Candidatus Desulfovibrio trichonymphae 0 species 1582 1 Desulfovibrio alaskensis 58180 1 species 0 5007 Desulfovibrio vulgaris 881 1 species 0 3407 Desulfovibrio piger 901 44742 Desulfovibrio fairfieldensis 1 0 species 2354 0 2144 order 4 1 Desulfarculales 453227 50 453228 23 Desulfarculaceae 0 2094 family 3 1 Desulfarculus 453229 10 2 1 0 genus 2071 Desulfarculus baarsii 453230 0 2061 species 1 class 0 115294 1 72 Epsilonproteobacteria 29547 219 0 113738 order 1 65 213849 3114 Campylobacterales 2771472 family 0 1918 5 0 genus 1022 1 3 Sulfurovum 10 265570 2646778 589 0 no rank 1 1 species 0 589 387093 Sulfurovum sp. NBC37-1 0 423 species 1 206403 Sulfurovum lithotrophicum genus 0 896 1 2 Nitratifractor 5 269260 Nitratifractor salsuginis 269261 891 0 species 1 6607 0 family 1 14 72293 1 Helicobacteraceae 843 1 277 0 genus 844 Wolinella succinogenes species 0 277 1 5 209 Helicobacter 12 1 6329 0 genus 2593540 1 no rank 0 292 1 292 0 species Helicobacter sp. MIT 01-6242 222136 1 0 species 2940 210 Helicobacter pylori 214 Helicobacter felis 1 0 species 153 138563 Helicobacter cetorum species 0 731 1 species 0 200 1 Helicobacter himalayensis 1591088 1 0 176 species 212 Helicobacter acinonychis 1 0 species 310 76936 Helicobacter typhlonius 213 Helicobacter cinaedi 1 0 329 species 349 0 species 1 217 Helicobacter mustelae species 0 493 1 37372 Helicobacter bilis 1 species 0 351 Helicobacter hepaticus 32025 72294 5526 Campylobacteraceae 1 41 0 100197 family 9446 0 no rank 5 2321108 3 1 genus 0 4714 28 28196 Arcobacter 0 species 2901 1 Arcobacter butzleri 28197 Arcobacter nitrofigilis 28199 1 1785 0 species 2297 0 genus 1 2321187 species 0 2297 1 Arcobacter sp. LPB0137 1850254 2321207 1 2435 0 no rank species 0 2435 1 Arcobacter sp. L 944547 genus 0 80722 1 26 Campylobacter 890 194 201 Campylobacter lari 1 0 2033 species 1 0 species 1495 Campylobacter sputorum 206 Campylobacter coli 195 31446 0 species 1 200 Campylobacter curvus 0 species 451 1 1 species 0 1287 1965231 Campylobacter pinnipediorum 0 species 2820 1 Campylobacter fetus 196 824 Campylobacter gracilis 1 0 species 546 species 0 398 1 522485 Campylobacter avium 197 Campylobacter jejuni 1 0 21835 species 1 701 0 species 198 Campylobacter hyointestinalis 1 0 species 3423 Campylobacter ureolyticus 827 1 813 0 species Campylobacter subantarcticus 497724 Campylobacter cuniculorum 374106 1 0 species 817 1 species 0 1721 Campylobacter lanienae 75658 Campylobacter concisus 199 1 0 species 708 4 0 no rank 3049 2593542 Campylobacter sp. RM16704 1500960 1 920 0 species 1660074 Campylobacter sp. RM8964 1 species 0 766 1 0 species 603 Campylobacter sp. RM6137 1660073 1 760 0 species 1660076 Campylobacter sp. RM12175 0 species 835 1 488546 Campylobacter peloridis 1 0 species 569 Campylobacter iguaniorum 1244531 Campylobacter volucris 1031542 1 0 species 2593 1224 0 species 1 260714 Campylobacter insulaenigrae species 0 473 1 Campylobacter helveticus 28898 1 595 0 species 76517 Campylobacter hominis 43 57665 Sulfurospirillum 4503 0 genus 9 1 Sulfurospirillum cavolei 366522 1 0 316 species 194424 Sulfurospirillum halorespirans 1 0 446 species Sulfurospirillum barnesii 44674 species 0 452 1 1 species 0 491 Sulfurospirillum deleyianum 65553 2618290 0 2221 no rank 3 1986224 Sulfurospirillum sp. SL2-1 1 667 0 species 1 673 0 species 220622 Sulfurospirillum sp. JPD-1 species 0 881 1 Sulfurospirillum sp. UCH001 1581011 1 0 534 species 66821 Sulfurospirillum multivorans 0 family 1902 4 2771471 286130 1 0 533 genus 148813 Sulfuricurvum kujiense 533 0 species 1 Sulfurimonas 12 202746 3 1 genus 0 1369 202747 Sulfurimonas autotrophica 1 0 species 915 1 442 0 species 39766 Sulfurimonas denitrificans 1 6 order 0 1337 Nautiliales 235899 2 2795691 2 family 0 313 1 2 0 313 genus Nitratiruptor 1 269258 312 0 no rank 1 2624044 387092 Nitratiruptor sp. SB155-2 0 species 312 1 1 3 1022 0 family 224467 4 Nautiliaceae Nautilia 16 191291 1018 0 genus 2 1 1 0 1002 species 244787 Nautilia profundicola 1553900 class 0 4760 11 order 0 2119 1 6 2024979 3 Bacteriovoracales 1 3 860 0 family Bacteriovoracaceae 1 263369 1 146784 Bacteriovorax 2 1 0 genus 859 1 0 species 858 Bacteriovorax stolpii 960 1652132 3 Halobacteriovoraceae 1 2 0 1256 family 1652133 1 0 genus 1253 1 0 species 1253 Halobacteriovorax marinus 97084 213481 9 Bdellovibrionales 1 5 order 0 2641 Bdellovibrionaceae 213483 8 4 1 0 family 2632 3 1 2624 0 genus Bdellovibrio 18 958 1 0 2206 species 959 Bdellovibrio bacteriovorus 1 species 0 400 Bdellovibrio exovorus 453816 1 885 1241182 0 class 1236 1670 Gammaproteobacteria 1 4 573 0 order 1775403 3 Nevskiales family 0 8 1 Sinobacteraceae 568386 2689614 2 0 562 family 2 1 562 0 genus Steroidobacter 469322 3 465721 Steroidobacter denitrificans 1 559 0 species Immundisolibacterales 1934945 33 1 4 1054 0 order 1934946 1 Immundisolibacteraceae 3 1 0 family 1021 genus 0 1020 1 2 1934947 14 Immundisolibacter 1 0 species 1006 1810504 Immundisolibacter cernigliae 5007 0 no rank 13 118884 Pseudohongiella 1524249 7 600 0 genus 1 2 593 0 species 1 1249552 Pseudohongiella spirulinae 2 1 0 852 genus Sedimenticola 349742 10 Sedimenticola thiotaurini 1543721 842 0 species 1 32036 4 1391 0 clade 0 genus 314 2 1 Candidatus Ruthia 1541743 1 1 0 species 313 386487 Candidatus Ruthia magnifica 0 species 767 1 Calyptogena okutanii thioautotrophic gill symbiont 410330 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 1 0 310 species clade 0 582 1 198346 186490 Candidatus Baumannia cicadellinicola 1 582 0 species Thiolapillus 1608298 8 2 1 988 0 genus 1 0 species 980 1076588 Thiolapillus brandeum 0 594 genus 2 655184 283 0 species 1 Candidatus Thioglobus singularis 1427364 311 0 species 1 Candidatus Thioglobus autotrophicus 1705394 Orbales 1240482 3 2939 0 order 1 6 2936 0 family 5 1 Orbaceae 18 1240483 Frischella 2 1335631 1673 0 genus 1 2 Frischella perrara 1267021 1 species 0 1671 1 2 1245 0 genus 1193503 1 Gilliamella Gilliamella apicola 1196095 species 0 1244 1 order 0 35972 1 44 Vibrionales 18 135623 374 641 Vibrionaceae family 0 35954 1 43 1 2 983 0 genus Paraphotobacterium 1 2042066 Paraphotobacterium marinum 1755811 species 0 982 1 Vibrio 662 324 1 30 genus 0 26332 2614977 no rank 0 960 2 0 species 428 1 Vibrio sp. 2521-89 2014742 1116375 Vibrio sp. EJY3 1 0 532 species 52443 Vibrio tapetis 1 0 605 species 1 0 species 3580 Vibrio anguillarum 55601 687 Vibrio gazogenes 0 670 species 1 1776 0 species 1 Vibrio vulnificus 672 0 1007 species 1 1435069 Vibrio tritonius 1891919 484 0 species group 1 Vibrio tubiashii 29498 1 species 0 484 1 species 0 742 212663 Vibrio tasmaniensis 1 species 0 995 676 Vibrio fluvialis 505 0 species 1 45658 Vibrio scophthalmi 10 0 8961 species group 717610 0 species 693 1 Vibrio owensii 696485 2315253 2 0 species subgroup 1123 Vibrio antiquarius 150340 species 0 384 1 1 0 species 739 Vibrio diabolicus 50719 1636 0 species 1 Vibrio parahaemolyticus 670 1 0 1125 species Vibrio campbellii 680 190895 Vibrio rotiferianus 1 species 0 447 Vibrio natriegens 691 970 0 species 1 species 0 1025 1 Vibrio harveyi 669 1 0 species 1487 663 Vibrio alginolyticus 766224 Vibrio jasicida 1 455 0 species 190893 Vibrio coralliilyticus 0 species 1250 1 1 572 0 species Vibrio furnissii 29494 674 Vibrio mimicus 1 species 0 852 1534743 Vibrio hyugaensis 0 species 412 1 species 0 583 1 Vibrio qinghaiensis 2025808 0 species 619 1 Vibrio nigripulchritudo 28173 1 0 412 species Vibrio breoganii 553239 Vibrio cholerae 666 1 species 0 1023 677 0 genus 1 2 20 246861 Grimontia 1 0 species 657 673 Grimontia hollisae genus 0 2939 4 1 Photobacterium 7 657 0 732 species 1 74109 Photobacterium profundum 38293 Photobacterium damselae 0 species 1290 1 1295392 Photobacterium gaetbulicola 0 species 910 1 1 4 4649 0 genus Aliivibrio 10 511678 0 species 2930 1 80852 Aliivibrio wodanis Aliivibrio fischeri 668 1 0 984 species 1 species 0 725 40269 Aliivibrio salmonicida Enterobacterales 91347 1089 0 order 668764 1 245 117 1 0 family 566457 1676 543 Enterobacteriaceae 0 6392 genus 1 8 Cronobacter 413496 234 Cronobacter turicensis 413502 1 660 0 species Cronobacter muytjensii 413501 1 0 species 1181 species 0 685 1 Cronobacter universalis 535744 413503 Cronobacter malonaticus 724 0 species 1 Cronobacter sakazakii 28141 1 0 1232 species Cronobacter dublinensis 413497 0 892 species 1 0 784 species 1 Cronobacter condimenti 1163710 Citrobacter 1012 544 14 1 genus 0 24121 1344959 7 15035 0 species group 67827 Citrobacter werkmanii 1538 0 species 1 1 1050 0 species Citrobacter freundii complex sp. CFNIH4 2077148 546 Citrobacter freundii 0 6615 species 1 0 2080 species 1 57706 Citrobacter braakii 774 0 species 1 Citrobacter freundii complex sp. CFNIH2 2066049 2077147 Citrobacter freundii complex sp. CFNIH3 1 0 species 1832 0 1146 species 1 2077149 Citrobacter freundii complex sp. CFNIH9 0 species 1059 1 Citrobacter farmeri 67824 1 0 species 1236 67825 Citrobacter rodentium 2 no rank 0 1632 2644389 1 0 species 855 Citrobacter sp. CFNIH10 1920110 Citrobacter sp. FDAARGOS_156 1702170 0 777 species 1 1 2117 0 species 35703 Citrobacter amalonaticus 545 Citrobacter koseri 0 2030 species 1 1 genus 0 666 401618 1 species 0 666 401619 Candidatus Riesia pediculicola 579 1 833 0 genus 61648 Kluyvera intermedia 1 0 833 species 0 5258 no rank 5 36866 1920128 Enterobacteriaceae bacterium ENNIH3 1 1152 0 species 1920109 Enterobacteriaceae bacterium ENNIH2 1 988 0 species species 0 861 1 891974 Plautia stali symbiont Enterobacteriaceae bacterium strain FGI 57 693444 species 0 1267 1 Enterobacteriaceae bacterium ENNIH1 2066051 990 0 species 1 Salmonella 590 93 3 1 0 28314 genus 1 0 species 1194 54736 Salmonella bongori species 0 27027 1 Salmonella enterica 28901 1 genus 0 483 409304 168169 Candidatus Ishikawaella capsulata 483 0 species 1 158483 28 Cedecea genus 0 2406 2 1 1 2378 0 species Cedecea neteri 158822 1 3 0 genus 3347 85 160674 Raoultella 846 0 species 1 Raoultella planticola 575 species 0 2416 1 Raoultella ornithinolytica 54291 genus 0 24634 22 1 Enterobacter 547 1356 9 0 6397 no rank 2608935 1914861 Enterobacter sp. SA187 0 species 1018 1 1560339 Enterobacter sp. E20 1 518 0 species 1 552 0 species Enterobacter sp. ODB01 1827481 1166130 Enterobacter sp. R4-368 0 1219 species 1 1 473 0 species Enterobacter sp. Crenshaw 1977566 0 species 583 1 Enterobacter sp. HK169 1868135 399742 Enterobacter sp. 638 species 0 704 1 2051905 Enterobacter sp. CRENT-193 1 0 species 614 1 0 species 716 Enterobacter sp. FY-07 1692238 0 species group 16881 12 354276 Enterobacter cloacae 550 1 0 species 6475 69218 Enterobacter cancerogenus 1 species 0 655 0 species 640 1 Enterobacter kobei 208224 0 2583 species 1 Enterobacter asburiae 61645 2757714 3 no rank 0 1495 1 0 species 483 1915310 Enterobacter cloacae complex sp. ECNIH7 0 542 species 1 2027919 Enterobacter cloacae complex bacterium 1 0 species 470 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 species 0 3618 1 3 2294 158836 Enterobacter hormaechei 1 0 subspecies 780 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' 1 subspecies 0 544 1296536 Enterobacter xiangfangensis 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 0 612 species Enterobacter ludwigii 299767 1 species 0 803 Klebsiella 570 1087 0 41256 genus 1 10 573 Klebsiella pneumoniae 1 21274 0 species 0 species 3902 1 244366 Klebsiella variicola Klebsiella aerogenes 548 0 1954 species 1 0 species 4560 1 Klebsiella oxytoca 571 species 0 1511 1 2026240 Klebsiella quasivariicola Klebsiella michiganensis 1134687 1 0 species 2446 1463165 Klebsiella quasipneumoniae 1 0 1859 species 2608929 0 2663 no rank 2 1 0 1269 species Klebsiella sp. M5al 1934254 1 1394 0 species Klebsiella sp. LTGPAF-6F 1905288 2043 561 Escherichia genus 0 366548 5 1 Escherichia fergusonii 564 1 8554 0 species 208962 Escherichia albertii 0 15710 species 1 0 337005 species 1 Escherichia coli 562 Escherichia marmotae 1499973 1 3236 0 species Lelliottia 110 1330545 1 4 genus 0 3430 Lelliottia amnigena 61646 0 1751 species 1 1 species 0 786 Lelliottia jeotgali 1907578 1 species 0 783 Lelliottia nimipressuralis 69220 Pluralibacter 44 1330546 3 1 4234 0 genus 1608 0 species 1 1334193 [Enterobacter] lignolyticus 61647 Pluralibacter gergoviae 1 species 0 2582 4 1 genus 0 2869 183 83654 Leclercia 0 no rank 1936 2 2627398 Leclercia sp. LSNIH3 1920116 0 908 species 1 species 0 1028 1 Leclercia sp. LSNIH1 1920114 Leclercia adecarboxylata 83655 1 0 750 species 191675 18 0 no rank 4035 84563 clade 0 4035 18 1 0 genus 504 1682492 1 0 species 504 Candidatus Tachikawaea gelatinosa 1410383 clade 0 801 3 146507 1199245 secondary endosymbiont of Ctenarytaina eucalypti 1 0 318 species 134287 secondary endosymbiont of Heteropsylla cubana 0 141 species 1 342 0 genus 1 568987 0 342 species 1 138072 Candidatus Hamiltonella defensa 1906661 0 395 genus 1 1070130 Candidatus Gullanella endobia 0 species 395 1 1906660 1 Candidatus Mikella genus 0 87 1 2 Candidatus Mikella endobia 1778264 1 0 species 86 1 0 genus 128 1906657 1 128 0 species 1778262 Candidatus Doolittlea endobia 1 0 clade 288 199891 1 288 0 species secondary endosymbiont of Trabutina mannipara 1835721 84564 0 clade 1726 7 0 1726 genus 1 7 Candidatus Blochmannia 203804 7 Candidatus Blochmannia vafer 251535 1 0 species 183 1 species 0 375 251542 Candidatus Blochmannia chromaiodes Candidatus Blochmannia floridanus 203907 0 species 207 1 2 0 444 no rank 711328 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 0 species 266 1 1 species 0 178 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 510 0 species 1 101534 Candidatus Blochmannia pennsylvanicus 1 2 0 106 genus Candidatus Hoaglandella 1906659 1 0 species 105 1 1778263 Candidatus Hoaglandella endobia 2915 620 Shigella 0 genus 40747 1 4 0 no rank 15884 1 2629414 Shigella sp. PAMC 28760 1813821 1 0 15884 species Shigella dysenteriae 622 1 12772 0 species 623 Shigella flexneri species 0 9176 1 1330547 67 Kosakonia genus 0 4137 5 1 1 0 1164 species Kosakonia radicincitans 283686 497725 Kosakonia oryzae 0 737 species 1 species 0 1082 1 Kosakonia sacchari 1158459 1 1087 0 species Kosakonia cowanii 208223 0 genus 124 2 1 3 1048757 Candidatus Moranella 121 0 species 1 1048758 Candidatus Moranella endobia 1335483 1 genus 0 947 0 species 947 1 Shimwellia blattae 563 21 1 0 13043 family 1903414 38 Morganellaceae 2 1 0 1623 genus Morganella 12 581 582 Morganella morganii 1 0 1611 species 637 1 genus 0 297 0 297 species 1 Arsenophonus symbiont of Lipoptena fortisetosa 634113 4 1 0 2786 genus 10 586 Providencia Providencia stuartii 588 1 species 0 1101 0 species 1043 1 587 Providencia rettgeri 0 species 632 1 Providencia alcalifaciens 126385 genus 0 2455 1 4 21 29487 Photorhabdus 574560 Photorhabdus temperata 740 0 species 1 1 species 0 828 Photorhabdus asymbiotica 291112 29488 Photorhabdus luminescens 0 866 species 1 2468 0 genus 3 1 583 24 Proteus 1 744 0 species 585 Proteus vulgaris 1 0 species 1700 584 Proteus mirabilis 626 15 Xenorhabdus 3376 0 genus 6 1 Xenorhabdus bovienii 40576 1323 0 species 1 Xenorhabdus poinarii 40577 1 406 0 species 351671 Xenorhabdus doucetiae 1 0 464 species Xenorhabdus nematophila 628 1 735 0 species 1 433 0 species 351679 Xenorhabdus hominickii 0 family 16505 1 20 1903410 67 Pectobacteriaceae 6 1 6564 0 genus 204037 193 Dickeya 1778540 Dickeya fangzhongdai 1 species 0 1286 204039 Dickeya dianthicola 1 0 species 870 0 species 1214 1 Dickeya dadantii 204038 1 species 0 1142 Dickeya zeae 204042 1859 0 species 1 1089444 Dickeya solani Brenneria 22 71655 genus 0 1106 1 2 species 0 1084 1 Brenneria goodwinii 1109412 84565 81 Sodalis 2263 0 genus 1 5 Sodalis praecaptivus 1239307 0 881 species 1 1 540 0 species 63612 Sodalis glossinidius 1 0 151 species Sodalis endosymbiont of Henestaris halophilus 1929246 1486991 Candidatus Sodalis pierantonius 1 0 610 species 1 6 0 genus 6505 188 122277 Pectobacterium Pectobacterium atrosepticum 29471 1 0 species 862 0 2860 species 1 Pectobacterium carotovorum 554 2042057 Pectobacterium polaris 1146 0 species 1 1905730 Pectobacterium parmentieri 0 species 768 1 0 species 681 1 55208 Pectobacterium wasabiae no rank 0 1138 2 451511 702 30 Plesiomonas 2 1 genus 0 1138 703 Plesiomonas shigelloides 0 1108 species 1 1 14 0 9507 family Hafniaceae 1903412 9 1 2 900 0 genus 82982 108 Obesumbacterium 82983 Obesumbacterium proteus 0 792 species 1 genus 0 2175 1 3 Hafnia 568 41 2621980 0 no rank 652 1 1848580 Hafnia sp. CBA7124 0 species 652 1 0 1482 species 1 Hafnia alvei 569 635 468 Edwardsiella 8 1 6423 0 genus species 0 675 1 Edwardsiella anguillarum 1821960 1 727 0 species 67780 Edwardsiella ictaluri 2 0 no rank 1522 2676541 1650654 Edwardsiella sp. LADL05-105 1 670 0 species 0 852 species 1 1578828 Edwardsiella sp. EA181011 1 806 0 species Edwardsiella hoshinae 93378 species 0 765 1 Edwardsiella piscicida 1263550 Edwardsiella tarda 636 0 species 1460 1 Yersiniaceae 1903411 126 1 39 0 family 37440 Serratia 949 613 1 16 0 22621 genus Serratia fonticola 47917 1 species 0 1759 28151 Serratia proteamaculans 1 694 0 species Serratia liquefaciens 614 1078 0 species 1 2647522 8 0 no rank 8071 1 0 species 1339 Serratia sp. FS14 1327989 1 0 878 species 1758196 Serratia sp. SSNIH1 1 0 species 652 Serratia sp. AS12 768490 Serratia sp. ATCC 39006 104623 796 0 species 1 Serratia sp. AS13 768493 0 652 species 1 0 species 1221 1 Serratia sp. MYb239 2033438 Serratia sp. SCBI 488142 1201 0 species 1 Serratia sp. FGI94 671990 1332 0 species 1 1 species 0 1313 61651 Serratia ficaria 1 species 0 2080 Serratia plymuthica 82996 61652 Serratia rubidaea 1 1329 0 species species 0 5348 1 Serratia marcescens 615 2997 0 genus 1 4 Rahnella 34037 88 1844 0 no rank 2 2635087 0 1062 species 1 Rahnella sp. Y9602 741091 Rouxiella sp. ERMR1:05 1805933 782 0 species 1 Rahnella aquatilis 34038 1 0 1065 species 0 genus 702 1 2 Chania 1745211 3 Chania multitudinisentens 1639108 0 699 species 1 1565532 Rouxiella 0 genus 45 1 2 1 0 995 genus Gibbsiella 5 929812 Gibbsiella quercinecans 929813 990 0 species 1 1 13 0 genus 9954 408 629 Yersinia 1 species 0 547 Yersinia rohdei 29485 Yersinia frederiksenii 29484 1 0 1980 species 2653513 no rank 0 573 1 0 573 species 1 1839800 Yersinia sp. FDAARGOS_228 0 453 species 1 29483 Yersinia aldovae 28152 Yersinia kristensenii 0 701 species 1 1649845 species group 0 1649 3 1 508 0 species Yersinia similis 367190 species 0 726 1 633 Yersinia pseudotuberculosis 632 Yersinia pestis 1 0 415 species Yersinia intermedia 631 species 0 616 1 1 0 472 species 263819 Yersinia aleksiciae 630 Yersinia enterocolitica 1997 0 species 1 1 0 558 species Yersinia ruckeri 29486 1 1903416 Budviciaceae 592 0 family 1 3 Pragia 2 82984 1 2 0 genus 591 Pragia fontium 82985 0 species 589 1 family 0 22993 1 28 Erwiniaceae 1903409 76 8 1 5047 0 genus Erwinia 551 192 1 species 0 709 Erwinia gerundensis 1619313 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 species 248 1 1 1058 0 species Erwinia billingiae 182337 Erwinia amylovora 552 0 species 698 1 Erwinia pyrifoliae 79967 0 species 545 1 species 0 965 1 338565 Erwinia tasmaniensis 2622719 1 632 0 no rank species 0 632 1 215689 Erwinia sp. Ejp617 genus 0 9604 1 11 Pantoea 53335 407 1076550 Pantoea rwandensis 0 903 species 1 Pantoea vagans 470934 species 0 1595 1 553 Pantoea ananatis 0 863 species 1 1235990 Candidatus Pantoea carbekii 284 0 species 1 2630326 3 0 2708 no rank 1 species 0 926 Pantoea sp. PSNIH2 1484157 Pantoea sp. At-9b 592316 1 1045 0 species 0 species 737 1 Pantoea sp. PSNIH1 1484158 0 1547 species group 1 1654067 549 Pantoea agglomerans 1 0 1547 species 1 species 0 693 Pantoea alhagi 1891675 1 0 604 species 66269 Pantoea stewartii 4687 0 genus 1 2 32199 32 Buchnera Buchnera aphidicola 9 1 0 species 4655 2100764 2457 0 genus 2 0 species 1341 1 Pantoea gaviniae 665914 1 1116 0 species Pantoea calida 665913 26 82986 Tatumella 0 genus 527 1 2 Tatumella citrea 53336 0 501 species 1 Wigglesworthia 51228 3 0 genus 595 2 1 1 0 species 592 51229 Wigglesworthia glossinidia Xanthomonadales 135614 693 53 1 order 0 51368 1 14 0 family 9096 1775411 134 Rhodanobacteraceae 0 genus 1299 2 1 323413 37 Dokdonella species 0 1262 1 Dokdonella koreensis 323415 Luteibacter 242605 10 1 2 625 0 genus 242606 Luteibacter rhizovicinus 1 species 0 615 231454 142 Dyella 0 4092 genus 4 1 445710 Dyella thiooxydans 1 0 1371 species 231455 Dyella japonica 0 1261 species 1 Dyella jiangningensis 1379159 1318 0 species 1 Frateuria 2 70411 2 1 0 1356 genus 81475 Frateuria aurantia species 0 1354 1 2233801 1 457 0 genus 2021234 Xanthomonadales bacterium D13 species 0 457 1 2 1 1133 0 genus Rhodanobacter 75309 5 1 species 0 1128 666685 Rhodanobacter denitrificans 32033 559 Xanthomonadaceae 38 1 family 0 41579 Pseudoxanthomonas 16 83618 genus 0 2944 3 1 415229 Pseudoxanthomonas spadix 1 species 0 1034 314722 Pseudoxanthomonas suwonensis 1 1894 0 species 2370 517 0 genus 1 2371 Xylella fastidiosa 517 0 species 1 83614 1 Luteimonas 0 651 genus 2 1 2006110 Luteimonas sp. 100111 1 0 species 650 68 67 Lysobacter 5 1 5118 0 genus 1 0 1171 species 69 Lysobacter enzymogenes Lysobacter antibioticus 84531 1 species 0 1242 Lysobacter capsici 435897 1384 0 species 1 species 0 1254 1 Lysobacter gummosus 262324 421 40323 Stenotrophomonas 9 1 14522 0 genus 1 0 6577 species group 995085 1 species 0 6577 40324 Stenotrophomonas maltophilia 1 0 species 1756 128780 Stenotrophomonas acidaminiphila 196198 4 0 4007 no rank species 0 846 1 Stenotrophomonas sp. KCTC 12332 1793721 Stenotrophomonas sp. LM091 1904944 0 species 1015 1 Stenotrophomonas sp. WZN-1 2005046 species 0 1250 1 1827305 Stenotrophomonas sp. MYb57 1 0 species 896 1 0 792 species Stenotrophomonas rhizophila 216778 969 0 species 1 Stenotrophomonas nitritireducens 83617 881 338 Xanthomonas genus 0 17268 1 17 1 0 species 935 Xanthomonas axonopodis 53413 Xanthomonas euvesicatoria 456327 0 species 674 1 0 species 1910 1 Xanthomonas campestris 339 466 0 species 1 29447 Xanthomonas albilineans 366650 Xanthomonas alfalfae 643 0 species 1 1 629 0 species 56460 Xanthomonas vesicatoria 643453 2 0 species group 3372 species 0 2592 1 Xanthomonas citri 346 Xanthomonas fuscans 366648 1 0 780 species 1689 0 species 1 Xanthomonas translucens 343 species 0 1138 1 Xanthomonas sacchari 56458 1 species 0 784 Xanthomonas perforans 442694 Xanthomonas oryzae 347 1707 0 species 1 Xanthomonas vasicola 56459 1 species 0 760 species 0 446 1 Xanthomonas fragariae 48664 1 562 0 species 1985254 Xanthomonas phaseoli 1 species 0 672 Xanthomonas hortorum 56454 134894 0 order 1 30 Pasteurellales 9 135625 0 134885 family 29 1 712 558 Pasteurellaceae Mannheimia 9 75984 0 genus 3577 1 4 2645054 1 no rank 0 843 1 843 0 species 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 85404 Mannheimia varigena 0 species 1374 1 75985 Mannheimia haemolytica species 0 1351 1 1 6 113888 0 genus 43 724 Haemophilus [Haemophilus] ducreyi 730 1 species 0 1138 0 species 7327 1 727 Haemophilus influenzae 0 species 95232 1 729 Haemophilus parainfluenzae 2609962 1 3371 0 no rank 712310 Haemophilus sp. oral taxon 036 species 0 3371 1 Haemophilus pittmaniae 249188 1 species 0 6777 Glaesserella 2094023 1 1 2 0 1439 genus 1 0 species 1438 738 Glaesserella parasuis 155493 1156 0 genus 1 750 Gallibacterium anatis 1 1156 0 species 713 21 Actinobacillus 0 3214 genus 1 5 1 831 0 species Actinobacillus suis 716 715 Actinobacillus pleuropneumoniae 1 956 0 species 1 715 0 species 718 Actinobacillus equuli 67854 Actinobacillus succinogenes 1 0 691 species genus 0 2939 1 3 416916 5 Aggregatibacter Aggregatibacter aphrophilus 732 2068 0 species 1 Aggregatibacter actinomycetemcomitans 714 1 866 0 species 697331 2 Basfia 870 0 genus 1 2 157673 [Mannheimia] succiniciproducens 0 species 868 1 214906 1 genus 0 1303 1 0 species 1303 Histophilus somni 731 genus 0 4042 3 1 9 745 Pasteurella 1 0 1102 species 754 Pasteurella dagmatis 1 0 2931 species 747 Pasteurella multocida 0 genus 1899 1 476528 1 0 species 1899 47735 Bibersteinia trehalosi 147311 0 order 1 129 Pseudomonadales 859 72274 1 86 family 0 117425 Pseudomonadaceae 919 135621 1 2 0 genus 357 1 1849530 Oblitimonas species 0 356 1 Oblitimonas alkaliphila 1697053 subfamily 0 3825 3 351 3825 0 genus 3 1 Azotobacter 352 33 2323 0 species 1 353 Azotobacter chroococcum Azotobacter vinelandii 354 1 species 0 1469 286 3870 Pseudomonas 80 1 genus 0 112324 1853130 Pseudomonas silesiensis 1 0 species 792 0 1403 species 1 Pseudomonas frederiksbergensis 104087 1 0 species 808 Pseudomonas versuta 1788301 1 1098 0 species 157782 Pseudomonas parafulva Pseudomonas koreensis 198620 species 0 1206 1 0 14788 species group 9 136843 0 8232 species 1 294 Pseudomonas fluorescens species 0 1342 1 Pseudomonas protegens 380021 1 0 719 species Pseudomonas corrugata 47879 Pseudomonas poae 200451 1 species 0 550 76758 Pseudomonas orientalis 0 435 species 1 0 1394 species 1 Pseudomonas azotoformans 47878 1 803 0 species Pseudomonas mandelii 75612 1 0 species 809 Pseudomonas veronii 76761 200450 Pseudomonas trivialis 0 504 species 1 Pseudomonas brassicacearum 930166 1 0 species 1376 1 0 species 578 Pseudomonas alkylphenolica 237609 0 no rank 22962 30 196821 species 0 422 1 1659194 Pseudomonas sp. GR 6-02 1 0 627 species Pseudomonas sp. SWI44 2083053 2083054 Pseudomonas sp. LG1D9 1 475 0 species 1 502 0 species Pseudomonas sp. HLS-6 2049589 species 0 1049 1 Pseudomonas sp. TKP 1415630 1 515 0 species 1534110 Pseudomonas sp. DR 5-09 1 0 species 955 1649877 Pseudomonas sp. CCOS 191 Pseudomonas sp. FGI182 1259844 1 817 0 species Pseudomonas sp. M30-35 1981174 1 475 0 species 1 0 species 944 1028989 Pseudomonas sp. StFLB209 1338689 Pseudomonas sp. JY-Q 0 species 656 1 2083055 Pseudomonas sp. LH1G9 1 species 0 598 Pseudomonas sp. MYb193 1827300 1 0 528 species 2018067 Pseudomonas sp. FDAARGOS_380 537 0 species 1 Pseudomonas sp. TCU-HL1 1856685 1 0 species 938 Pseudomonas sp. UW4 1207075 1 0 species 566 1931241 Pseudomonas sp. S-6-2 species 0 528 1 Pseudomonas sp. SWI36 2083052 1 634 0 species 1930532 Pseudomonas sp. CC6-YY-74 0 570 species 1 817 0 species 1 1898684 Pseudomonas sp. LPH1 0 1025 species 1 1611770 Pseudomonas sp. MRSN12121 Pseudomonas sp. NC02 2067572 1 0 species 898 1636610 Pseudomonas sp. PONIH3 species 0 1070 1 1325 0 species 1 1294143 Pseudomonas sp. ATCC 13867 1500687 Pseudomonas sp. St29 0 1165 species 1 1 0 species 1152 1500686 Pseudomonas sp. Os17 630 0 species 1 Pseudomonas sp. SWI6 2083051 Pseudomonas sp. URMO17WK12:I11 1283291 1012 0 species 1 1 715 0 species Pseudomonas sp. VLB120 69328 0 817 species 1 Pseudomonas sp. XWY-1 2069256 Pseudomonas rhizosphaerae 216142 0 species 982 1 1 0 662 species 157783 Pseudomonas cremoricolorata species 0 623 1 Pseudomonas lurida 244566 0 5631 species group 2 136842 0 1536 species 1 296 Pseudomonas fragi Pseudomonas chlororaphis 587753 1 species 0 4095 136846 2 species group 0 6911 0 948 species 1 Pseudomonas balearica 74829 species subgroup 0 5963 1 578833 316 Pseudomonas stutzeri 1 species 0 5963 1 0 species 847 Pseudomonas psychrotolerans 237610 1583341 Pseudomonas cerasi 0 848 species 1 0 species 959 1 312306 Pseudomonas entomophila 8 0 9929 species group 136849 Pseudomonas cichorii 36746 0 668 species 1 2 0 species subgroup 1737 251698 47877 Pseudomonas amygdali 917 0 species 1 Pseudomonas savastanoi 29438 0 820 species 1 251701 Pseudomonas syringae group genomosp. 3 0 1217 species 1 2775504 0 no rank 722 1 1 species 0 722 Pseudomonas sp. Lz4W 1206777 680 0 species 1 Pseudomonas viridiflava 33069 251695 4354 0 species subgroup 1 1 0 4354 species Pseudomonas syringae 317 46257 Pseudomonas avellanae 0 species 551 1 136841 6 16019 0 species group Pseudomonas mendocina 300 0 species 3870 1 0 species 4531 1 Pseudomonas aeruginosa 287 1277 0 species 1 Pseudomonas resinovorans 53412 1232139 species subgroup 0 1791 1 1 species 0 1791 Pseudomonas furukawaii 1149133 43263 Pseudomonas alcaligenes 0 species 1428 1 53408 Pseudomonas citronellolis 1 0 3122 species 6 0 species group 16936 136845 Pseudomonas oryzihabitans 47885 1 1240 0 species 1 species 0 1797 Pseudomonas mosselii 78327 70775 Pseudomonas plecoglossicida 1 0 species 559 Pseudomonas fulva 47880 1 0 1485 species 76759 Pseudomonas monteilii 0 species 2180 1 Pseudomonas putida 303 1 9675 0 species 1 species 0 490 219572 Pseudomonas antarctica species 0 1175 1 Pseudomonas knackmussii 65741 species 0 1431 1 101564 Pseudomonas alcaliphila 42 1 29027 0 family Moraxellaceae 126 468 29 497 Psychrobacter 11 1 0 4470 genus 0 475 species 1 Psychrobacter urativorans 45610 1 0 688 species Psychrobacter arcticus 334543 0 species 391 1 Psychrobacter alimentarius 261164 1 0 species 413 Psychrobacter cryohalolentis 330922 196806 6 no rank 0 2474 1699624 Psychrobacter sp. P11G5 458 0 species 1 Psychrobacter sp. DAB_AL43B 1028416 1 0 species 513 1720344 Psychrobacter sp. AntiMn-1 0 380 species 1 571800 Psychrobacter sp. G species 0 411 1 1 379 0 species 1699622 Psychrobacter sp. P2G3 1 0 species 333 Psychrobacter sp. PRwf-1 349106 Acinetobacter 469 319 0 21953 genus 25 1 1 species 0 798 1148157 Acinetobacter oleivorans 0 452 species 1 Acinetobacter indicus 756892 1 0 1298 species Acinetobacter equi 1324350 1 490 0 species 202950 Acinetobacter sp. ADP1 62977 0 490 strain 1 909768 9549 0 species group 5 1 species 0 1431 471 Acinetobacter calcoaceticus 106654 Acinetobacter nosocomialis 1 1192 0 species 1 0 505 species Acinetobacter lactucae 1785128 48296 Acinetobacter pittii 2970 0 species 1 0 3451 species 1 Acinetobacter baumannii 470 Acinetobacter bereziniae 106648 0 species 723 1 Acinetobacter haemolyticus 29430 species 0 1002 1 Acinetobacter schindleri 108981 species 0 587 1 Acinetobacter junii 40215 1 species 0 972 7 no rank 0 3744 196816 species 0 504 1 Acinetobacter sp. NCu2D-2 1608473 1 0 species 516 1758189 Acinetobacter sp. ACNIH2 1636603 Acinetobacter sp. ACNIH1 426 0 species 1 1 454 0 species 1646498 Acinetobacter sp. TTH0-4 1808001 Acinetobacter sp. LoGeW2-3 1 0 851 species 2079596 Acinetobacter sp. SWBY1 1 0 561 species 1407071 Acinetobacter sp. TGL-Y2 0 432 species 1 Acinetobacter soli 487316 1 0 species 439 1 0 631 species Acinetobacter larvae 1789224 1 species 0 556 40214 Acinetobacter johnsonii 40216 Acinetobacter radioresistens 1 0 393 species 11 475 Moraxella 2478 0 genus 1 5 1 0 species 671 386891 Moraxella bovoculi 34062 Moraxella osloensis species 0 1021 1 1 0 496 species Moraxella catarrhalis 480 0 279 species 1 Moraxella ovis 29433 1 6 0 1693 order 1692040 35 Acidiferrobacterales 1692041 40 Acidiferrobacteraceae 1 5 0 1658 family genus 0 596 1 2 1692042 12 Sulfurifustis 584 0 species 1 Sulfurifustis variabilis 1675686 Sulfuricaulis 4 1744881 1 2 1022 0 genus Sulfuricaulis limicola 1620215 0 1018 species 1 Cardiobacteriales 135615 13 1 3 0 410 order 868 2 family 0 397 4 869 Dichelobacter 1 2 0 genus 397 0 393 species 1 870 Dichelobacter nodosus 0 order 22739 51 1 Chromatiales 378 135613 1738654 5 Woeseiaceae 3 1 0 351 family Woeseia 1738655 2 genus 0 346 1 2 Woeseia oceani 1548547 344 0 species 1 1 18 0 family 9050 Chromatiaceae 1046 125 7 85072 Allochromatium 1396 0 genus 1 2 species 0 1389 1 1049 Allochromatium vinosum 1980513 15 Candidatus Nitrosoglobus 0 genus 1069 1 2 1630141 Candidatus Nitrosoglobus terrae 1 0 species 1054 1 2 984 0 genus Marichromatium 85076 5 1 0 species 979 37487 Marichromatium purpuratum 14 53392 Thiodictyon 1 2 0 1630 genus 0 1616 species 1 1166950 Candidatus Thiodictyon syntrophicum Thioflavicoccus 3 156885 1 2 705 0 genus 1 702 0 species 80679 Thioflavicoccus mobilis 40 13724 Thiocystis 991 0 genus 2 1 1 species 0 951 Thiocystis violascens 73141 1 no rank 0 1254 82569 0 species 1254 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 20 1227 Nitrosococcus 4 1 0 genus 896 Nitrosococcus watsonii 473531 1 0 299 species Nitrosococcus halophilus 133539 1 288 0 species 1 species 0 289 Nitrosococcus oceani 1229 255526 36 Halothiobacillaceae 0 family 813 1 4 0 777 genus 1 3 109262 9 Halothiobacillus 1 306 0 species 927 Halothiobacillus neapolitanus 2636392 1 0 462 no rank 1 462 0 species Halothiobacillus sp. LS2 1860122 451214 2 1225 0 no rank 1 2 0 1225 genus 37 1273155 Thiohalobacter 1 0 1188 species 585455 Thiohalobacter thiocyanaticus 0 family 861 3 1 Granulosicoccaceae 449719 4 437504 2 Granulosicoccus 2 1 0 genus 857 1 855 0 species Granulosicoccus antarcticus 437505 0 9275 family 1 17 Ectothiorhodospiraceae 113 72276 106633 92 Thioalkalivibrio 0 genus 4438 1 6 0 no rank 632 1 2621013 Thioalkalivibrio sp. K90mix 396595 0 632 species 1 1 0 species 1592 1033854 Thioalkalivibrio sulfidiphilus 1 589 0 species 186931 Thioalkalivibrio nitratireducens Thioalkalivibrio versutus 106634 931 0 species 1 species 0 602 1 Thioalkalivibrio paradoxus 108010 genus 0 447 1 1765964 447 0 species 1 Acidihalobacter prosperus 160660 genus 0 919 1 2 2 133193 Alkalilimnicola Alkalilimnicola ehrlichii 351052 species 0 917 1 Ectothiorhodospira 1051 3 2 1 1280 0 genus 2684909 0 no rank 1277 1 species 0 1277 1 Ectothiorhodospira sp. BSL-9 1442136 Halorhodospira 1 85108 1 2 1171 0 genus Halorhodospira halophila 1053 1 0 1170 species 14 1335745 Spiribacter 0 genus 907 1 3 Spiribacter salinus 1335746 1 0 species 287 1335757 Spiribacter curvatus 1 species 0 606 Wenzhouxiangellaceae 1676141 4 1 3 0 family 786 1676142 46 Wenzhouxiangella 1 2 782 0 genus 0 species 736 1 1579979 Wenzhouxiangella marina 2 0 1502 no rank 33811 1248727 endosymbiont of unidentified scaly snail isolate Monju 1 0 915 species 0 587 species 1 gamma proteobacterium HdN1 83406 order 0 12225 1 21 118969 8 Legionellales 8445 0 family 1 15 Legionellaceae 21 444 1 12 7723 0 genus Legionella 445 8 0 608 species 1 452 Legionella spiritensis 1 species 0 503 Legionella clemsonensis 1867846 1 0 species 374 28087 Legionella sainthelensi 1 0 754 species 449 Legionella hackeliae 1 2688 0 species Legionella pneumophila 446 Legionella lansingensis 45067 1 species 0 596 Legionella waltersii 66969 0 435 species 1 species 0 323 1 29423 Legionella oakridgensis 1 807 0 species 450 Legionella longbeachae 0 99 species 1 2005262 Legionella endosymbiont of Polyplax serrata species 0 528 1 Legionella fallonii 96230 Tatlockia 1 465 genus 0 701 1 2 1 0 700 species 451 Tatlockia micdadei family 0 3772 5 1 1 118968 Coxiellaceae Coxiella 2 776 1 3 3538 0 genus 2676648 0 276 no rank 1 325775 Coxiella endosymbiont of Amblyomma americanum 1 species 0 276 0 3260 species 1 777 Coxiella burnetii 134284 no rank 0 233 1 Coxiella-like endosymbiont 1592897 1 233 0 species Alteromonadales 135622 202 1 104 0 50089 order Shewanellaceae 131 267890 13252 0 family 1 25 24 1 genus 0 13121 Shewanella 22 209 60961 Shewanella woodyi species 0 2031 1 271097 Shewanella sediminis 0 714 species 1 60217 Shewanella violacea species 0 451 1 Shewanella frigidimarina 56812 species 0 404 1 0 species 311 1 Shewanella bicestrii 2018305 1 0 species 355 60478 Shewanella amazonensis 1 0 678 species 404011 Shewanella piezotolerans Shewanella pealeana 70864 501 0 species 1 1100 0 species 1 62322 Shewanella baltica 1 species 0 678 93973 Shewanella japonica 1 0 species 376 70863 Shewanella oneidensis 0 species 427 1 Shewanella marisflavi 260364 192073 Shewanella denitrificans 1 species 0 320 196818 6 1779 0 no rank Shewanella sp. ANA-3 94122 species 0 406 1 Shewanella sp. Pdp11 2059264 species 0 314 1 1 0 283 species Shewanella sp. W3-18-1 351745 322 0 species 1 Shewanella sp. WE21 2029986 1 0 218 species Shewanella sp. MR-4 60480 Shewanella sp. MR-7 60481 0 236 species 1 1 499 0 species Shewanella halifaxensis 271098 Shewanella putrefaciens 24 1 0 species 489 Shewanella loihica 359303 1 species 0 576 0 species 1223 1 Shewanella psychrophila 225848 1 3 929 0 family Ferrimonadaceae 6 267892 2 1 genus 0 923 Ferrimonas 44011 29 species 0 894 1 Ferrimonas balearica 44012 1 3 0 family 888 Moritellaceae 267891 13 56 58050 Moritella 0 875 genus 2 1 819 0 species 1 Moritella viscosa 80854 Psychromonadaceae 1 267894 1 3 family 0 1854 67572 0 genus 1853 2 Psychromonas ingrahamii 357794 species 0 1046 1 1 0 no rank 807 2614957 1 0 807 species Psychromonas sp. CNPT3 314282 1 29 0 13211 family 75 72275 Alteromonadaceae genus 0 958 2 1 Lacimicrobium 1751872 19 Lacimicrobium alkaliphilum 1526571 0 939 species 1 0 533 genus 1 1621534 Paraglaciecola psychrophila 326544 0 species 533 1 0 genus 4837 10 1 226 30 Alteromonas 1 0 species 835 Alteromonas mediterranea 314275 3 855 0 no rank 2614992 1 289 0 species 1917158 Alteromonas sp. RW2A1 2058133 Alteromonas sp. MB-3u-76 1 species 0 304 species 0 262 1 Alteromonas sp. Mac1 1777491 1 590 0 species Alteromonas stellipolaris 233316 Alteromonas naphthalenivorans 715451 0 302 species 1 382 0 species 1 Alteromonas addita 287094 Alteromonas australica 589873 1 0 490 species 0 1353 species 1 28108 Alteromonas macleodii 1 2 327 0 genus Agarivorans 261825 5 680279 Agarivorans gilvus 1 0 322 species 2742 46 Marinobacter 10 1 genus 0 5707 1 0 750 species 1420917 Marinobacter salarius species 0 600 1 1874317 Marinobacter salinus Marinobacter hydrocarbonoclasticus 2743 987 0 species 1 Marinobacter similis 1420916 1 0 species 411 651 0 species 1 1033846 Marinobacter adhaerens 1 333 0 species Marinobacter psychrophilus 330734 0 1929 no rank 3 83889 0 688 species 1 Marinobacter sp. CP1 1671721 1 0 794 species Marinobacter sp. LQ44 1749259 490759 Marinobacter sp. BSs20148 1 447 0 species 0 774 genus 3 1 Glaciecola 89404 1 300231 Glaciecola nitratireducens 1 355 0 species 2618684 no rank 0 418 1 1 0 418 species Glaciecola sp. 4H-3-7+YE-5 983545 1 25 family 0 13156 Pseudoalteromonadaceae 46 267888 24 1 0 genus 13110 Pseudoalteromonas 297 53246 1 species 0 550 Pseudoalteromonas aliena 247523 0 345 species 1 176102 Pseudoalteromonas agarivorans 1 0 species 928 298657 Pseudoalteromonas spongiae 267375 Pseudoalteromonas marina 1 species 0 494 43659 Pseudoalteromonas tetraodonis 1 0 species 490 0 687 species 1 Pseudoalteromonas tunicata 314281 Pseudoalteromonas issachenkonii 152297 1 531 0 species 43662 Pseudoalteromonas piscicida 1 0 species 397 194690 5 0 2636 no rank 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 0 579 1 448 0 species 1 1761891 Pseudoalteromonas sp. 13-15 234831 Pseudoalteromonas sp. SM9913 0 species 493 1 Pseudoalteromonas sp. NC201 1514074 species 0 398 1 283699 Pseudoalteromonas sp. Bsw20308 1 0 718 species Pseudoalteromonas atlantica 288 1 0 species 784 0 species 626 1 Pseudoalteromonas nigrifaciens 28109 0 759 species 1 Pseudoalteromonas piratica 1348114 1 0 546 species 166935 Pseudoalteromonas translucida 28107 Pseudoalteromonas espejiana 1 species 0 603 1 0 species 397 43658 Pseudoalteromonas rubra 1 0 623 species 43657 Pseudoalteromonas luteoviolacea 0 species 345 1 Pseudoalteromonas phenolica 161398 0 530 species 1 228 Pseudoalteromonas haloplanktis 394751 Pseudoalteromonas arctica 0 542 species 1 1 9 5397 0 family 6 267889 Colwelliaceae 58 1518149 Thalassotalea 0 600 genus 2 1 1 0 542 species Thalassotalea crassostreae 1763536 genus 0 4791 6 1 Colwellia 28228 8 0 species 1185 1 Colwellia psychrerythraea 28229 865 0 species 1 Colwellia beringensis 1967665 196834 3 no rank 0 2733 1816219 Colwellia sp. PAMC 21821 841 0 species 1 Colwellia sp. MT41 58049 1 0 species 1058 0 834 species 1 Colwellia sp. PAMC 20917 1816218 1 6 family 0 1200 Idiomarinaceae 267893 24 10 135575 Idiomarina 1 5 1176 0 genus 0 400 species 1 135577 Idiomarina loihiensis 0 247 species 1 Idiomarina piscisalsi 1096243 2 0 no rank 519 2614829 2055892 Idiomarina sp. X4 313 0 species 1 2100422 Idiomarina sp. OT37-5b 1 206 0 species Thiotrichales 1 72273 order 0 17756 1 32 4 1 family 0 1524 135617 1 Thiotrichaceae 0 genus 476 2 1 Thioploca 40751 9 1 species 0 467 40754 Thioploca ingrica 1021 0 1047 genus 1 0 1047 species 1 288004 Beggiatoa leptomitoformis 0 4301 family 1 13 Piscirickettsiaceae 31 135616 1461 0 genus 1 4 Cycloclasticus 34067 5 2 no rank 0 967 2621467 1 0 species 494 Cycloclasticus sp. P1 385025 1 species 0 473 Cycloclasticus sp. PY97N 728003 489 0 species 1 Cycloclasticus zancles 1329899 Methylophaga 40222 4 847 0 genus 1 3 species 0 386 1 Methylophaga nitratireducenticrescens 754476 1 species 0 457 Methylophaga frappieri 754477 933 627 0 genus 2 Thiomicrospira cyclica 147268 1 374 0 species Thiomicrospira aerophila 92245 species 0 253 1 1237 887 0 genus 1 1238 Piscirickettsia salmonis 1 0 species 887 Hydrogenovibrio 5 28884 1 2 genus 0 448 39765 Hydrogenovibrio crunogenus 1 443 0 species family 0 11930 1 14 Francisellaceae 4 34064 Francisella 177 262 genus 0 11149 1 12 0 no rank 1284 2 2610885 Francisella sp. MA067296 475375 species 0 743 1 541 0 species 1 1547445 Francisella sp. FSC1006 Francisella persica 954 1 0 species 559 Francisella sp. TX077310 573570 species 0 1166 1 species 0 1517 1 Francisella noatunensis 657445 Francisella sp. TX077308 573569 1 0 species 583 1 0 746 species Francisella sp. CA97-1460 1542390 263 Francisella tularensis 1 species 0 1931 1 0 species 1637 Francisella philomiragia 28110 1 0 species 660 Francisella hispaniensis 622488 1 species 0 889 549298 Francisella halioticida 1869285 1 genus 0 777 1 777 0 species 594679 Allofrancisella guangzhouensis Aeromonadales 180 135624 1 28 40342 0 order Aeromonadaceae 339 84642 27 1 0 family 40162 1 2 0 1773 genus Zobellella 4 347533 0 species 1769 1 347534 Zobellella denitrificans Tolumonas 1 43947 1 2 752 0 genus 1 0 751 species 43948 Tolumonas auensis 129577 genus 0 1872 1 2636315 1 0 1872 no rank 1 1872 0 species 511062 Oceanimonas sp. GK1 1 3 584 0 genus 225143 4 Oceanisphaera 1 0 species 350 1416627 Oceanisphaera profunda 1 0 230 species 1903694 Oceanisphaera sp. AMac2203 1918 642 Aeromonas 18 1 genus 0 34842 196024 Aeromonas dhakensis 1 0 1378 species 648 Aeromonas caviae 0 species 1173 1 0 species 10960 1 644 Aeromonas hydrophila species 0 1052 1 651 Aeromonas media 1 species 0 1831 645 Aeromonas salmonicida 1 0 3467 species Aeromonas veronii 654 1 species 0 1410 Aeromonas aquatica 558964 0 1040 species 1 652 Aeromonas schubertii 257493 0 no rank 9318 8 934 0 species 1 1636606 Aeromonas sp. ASNIH1 1079 0 species 1 Aeromonas sp. ASNIH3 1636608 1636609 Aeromonas sp. ASNIH4 1105 0 species 1 1758179 Aeromonas sp. ASNIH5 species 0 1638 1 1 species 0 1145 1636607 Aeromonas sp. ASNIH2 1 1246 0 species Aeromonas sp. CA23 2033032 2033033 Aeromonas sp. CU5 0 1046 species 1 1 1125 0 species 1920107 Aeromonas sp. ASNIH7 948519 Aeromonas rivipollensis 1 0 species 1295 18 135618 Methylococcales 4493 0 order 13 1 Methylococcaceae 403 32 family 0 4475 12 1 2 1 0 389 genus Methylomicrobium 4 39773 0 385 species 1 271065 Methylomicrobium alcaliphilum 0 genus 2807 1 5 Methylomonas 416 41 485 0 species 1 Methylomonas denitrificans 1538553 no rank 0 1019 1 2608980 species 0 1019 1 1727196 Methylomonas sp. DH-1 1 773 0 species 702114 Methylomonas koyamae Methylomonas methanica 421 1 0 489 species 413 6 Methylococcus 0 genus 807 2 1 Methylococcus capsulatus 414 species 0 801 1 2 1 0 440 genus Methylovulum 4 762296 436 0 species 1 1704499 Methylovulum psychrotolerans Cellvibrionales 79 1706369 1 28 10844 0 order family 0 1293 1 5 Spongiibacteraceae 1706375 19 1434050 0 266 genus 1 1470434 Zhongshania aliphaticivorans 1 0 species 266 1084558 0 499 genus 1 Oceanicoccus sagamiensis 716816 0 species 499 1 1 2 0 genus 509 Spongiibacter 630749 2 1 0 no rank 507 2631504 species 0 507 1 Spongiibacter sp. IMCC21906 1620392 1 5 family 0 1901 4 1706373 Microbulbiferaceae 48073 21 Microbulbifer 1897 0 genus 1 4 species 0 488 1 260552 Microbulbifer agarilyticus 1 663 0 species 1769779 Microbulbifer aggregans 252514 Microbulbifer thermotolerans 1 0 species 725 0 4409 family 1 13 1706371 12 Cellvibrionaceae Simiduia 447467 7 1 2 466 0 genus 0 species 459 1 Simiduia agarivorans 447471 0 genus 2257 4 1 11 10 Cellvibrio 1 0 698 species 155077 Cellvibrio japonicus 1548 0 no rank 2 2624793 1945512 Cellvibrio sp. PSBB023 1 660 0 species 1987723 Cellvibrio sp. PSBB006 1 species 0 888 1 2425 Teredinibacter 0 540 genus 1 2 2426 Teredinibacter turnerae species 0 539 1 2 1 633 0 genus 2036021 1 Agarilytica Agarilytica rhodophyticola 1737490 1 632 0 species 1 2 0 genus 501 316625 5 Saccharophagus 1 species 0 496 86304 Saccharophagus degradans family 0 3162 4 1 Halieaceae 1 1706372 1217416 20 Halioglobus 0 3161 genus 1 3 1 species 0 2617 Halioglobus japonicus 930805 930806 Halioglobus pacificus 1 524 0 species 135619 533 Oceanospirillales 1 68 0 29537 order 4568 0 family 1 12 135620 45 Oceanospirillaceae 4 1 genus 0 2108 Marinomonas 28253 6 1 665 0 species Marinomonas posidonica 936476 1 1043 0 no rank 196814 Marinomonas sp. MWYL1 400668 0 1043 species 1 0 species 394 1 119864 Marinomonas mediterranea 187492 1 Thalassolituus 2 1 0 genus 524 187493 Thalassolituus oleivorans 1 0 species 523 1537406 0 352 genus 1 1249553 Bacterioplanes sanyensis 1 352 0 species genus 0 547 1 2 Oleispira 188907 1 0 species 546 1 188908 Oleispira antarctica 0 genus 992 1 2 Marinobacterium 48075 4 Marinobacterium aestuarii 1821621 0 species 988 1 family 0 864 1 4 9 255527 Saccharospirillaceae 1 2 532 0 genus Gynuella 2 1445504 1 species 0 530 Gynuella sunshinyii 1445505 1 0 genus 323 230494 0 species 323 1 1336806 Reinekea forsetii 1 6 1401 0 family 3 1920240 Kangiellaceae 1398 0 genus 1 5 Kangiella 13 261963 1 487 0 species Kangiella sediminilitoris 1144748 0 species 389 1 1561924 Kangiella profundi 914150 Kangiella geojedonensis 1 species 0 212 0 species 297 1 261964 Kangiella koreensis Hahellaceae 9 224379 0 family 916 1 3 158481 6 Hahella 907 0 genus 2 1 158327 Hahella chejuensis 1 0 901 species family 0 516 2 191033 516 0 genus 1 2 Oleiphilus 5 141450 141451 Oleiphilus messinensis 0 species 511 1 9 1 family 0 4141 Alcanivoracaceae 56 224372 5 2025617 Ketobacter 0 genus 555 2 1 1 0 550 species 1917421 Ketobacter alkanivorans 59753 81 Alcanivorax 1 6 0 genus 3530 Alcanivorax dieselolei 285091 794 0 species 1 0 294 no rank 1 2638842 1 species 0 294 1113728 Alcanivorax sp. NBRC 101098 1 281 0 species 59754 Alcanivorax borkumensis 1 983 0 species 1094342 Alcanivorax xenomutans species 0 1097 1 1306787 Alcanivorax pacificus 1 31 0 16598 family Halomonadaceae 28256 232 0 610 genus 1 42054 1 610 0 species 158080 Chromohalobacter salexigens 55 504090 Kushneria 1918 0 genus 1 3 698828 Kushneria konosiri species 0 1043 1 157779 Kushneria marisflavi 1 species 0 820 2 1 0 genus 1164 Cobetia 18 204286 Cobetia marina 28258 1146 0 species 1 1 2 0 769 genus Halotalea 376488 45 724 0 species 1 376489 Halotalea alkalilenta 15 1 0 10710 genus Halomonas 2745 328 1897729 Halomonas aestuarii 1 species 0 1177 1265 0 species 1 475662 Halomonas beimenensis 314 0 species 1 213554 Halomonas campaniensis Halomonas huangheensis 1178482 species 0 938 1 8 no rank 0 4779 2609666 1610576 Halomonas sp. R57-5 707 0 species 1 species 0 420 1 1962264 Halomonas sp. 'Soap Lake #7' Halomonas sp. GT 1971364 0 species 371 1 Halomonas sp. KO116 1504981 1 0 species 473 Halomonas sp. 'Soap Lake #6' 1949203 0 species 420 1 1118153 Halomonas sp. GFAJ-1 0 308 species 1 Halomonas sp. 1513 1883416 1 0 1128 species 1 952 0 species 2136172 Halomonas sp. SF2003 115561 Halomonas hydrothermalis 1 781 0 species 1 1128 0 species 507626 Halomonas chromatireducens 114403 5 0 476 no rank 2 1 250 0 genus Candidatus Evansia 1 1495768 249 0 species 1 1495769 Candidatus Evansia muelleri 155 0 genus 1 2 Candidatus Portiera 1 235572 1 154 0 species 91844 Candidatus Portiera aleyrodidarum 114185 0 genus 71 1 1 species 0 71 Candidatus Carsonella ruddii 114186 1 2 719 0 genus Salinicola 21 404432 1771309 Salinicola tamaricis 0 species 698 1 class 0 350532 551 1 Alphaproteobacteria 1166 28211 0 order 1172 4 2800060 1 4 family 0 1172 Hyphomonadaceae 22 69657 2723 358 0 genus 1 species 0 358 1 Hirschia baltica 2724 85 0 genus 792 2 species 0 506 1 Hyphomonas neptunium 81032 1 0 no rank 286 2630699 1906738 Hyphomonas sp. Mor2 286 0 species 1 1 81 0 order 50581 Sphingomonadales 204457 415 335929 203 Erythrobacteraceae 1 22 0 9815 family 2800788 no rank 0 2960 6 1 3 0 genus 1674 Erythrobacter 1041 24 1112 Porphyrobacter neustonensis 653 0 species 1 species 0 997 1 39960 Erythrobacter litoralis 3 1 1286 0 genus 57 1111 Porphyrobacter 2 0 1229 no rank 2683265 1 species 0 616 Porphyrobacter sp. LM 6 1896196 Porphyrobacter HT-58-2 2023229 613 0 species 1 2800686 genus 0 1145 2 1 0 species 532 Altererythrobacter mangrovi 1982042 Altererythrobacter dongtanensis 692370 1 613 0 species 1 0 genus 343 2800685 1 species 0 343 Altererythrobacter marensis 543877 1855416 2 genus 0 708 1 0 404 species Erythrobacter flavus 192812 266951 Erythrobacter seohaensis 1 0 304 species 2800681 0 genus 962 2 1 565 0 species 502682 Erythrobacter gangjinensis 1648404 Erythrobacter atlanticus 1 species 0 397 1 genus 0 598 2800682 645517 Altererythrobacter namhicola 0 598 species 1 4 1 0 genus 1523 361177 30 Altererythrobacter 361183 Altererythrobacter epoxidivorans 0 species 414 1 1267766 Altererythrobacter atlanticus 0 719 species 1 476157 Altererythrobacter ishigakiensis 1 360 0 species 7 1295327 Croceicoccus 0 genus 1373 1 3 0 species 645 1 Croceicoccus marinus 450378 721 0 species 1 1348774 Croceicoccus naphthovorans Sphingomonadaceae 41297 293 40351 0 family 58 1 1434046 19 Sphingorhabdus 1824 0 genus 1 3 2 no rank 0 1805 2614947 1 1232 0 species 1806885 Sphingorhabdus sp. M41 1 0 species 573 2077182 Sphingorhabdus sp. YGSMI21 1 15 0 12633 genus Sphingobium 360 165695 species 0 1317 1 Sphingobium indicum 332055 Sphingobium baderi 1332080 species 0 642 1 1000 0 species 1 Sphingobium chlorophenolicum 46429 2611147 0 no rank 4857 6 1 0 711 species 1843368 Sphingobium sp. RAC03 Sphingobium sp. MI1205 407020 1 462 0 species 1 589 0 species 1855519 Sphingobium sp. EP60837 1 905 0 species Sphingobium sp. TKS 1315974 0 species 1367 1 Sphingobium sp. YBL2 484429 627192 Sphingobium sp. SYK-6 1 0 823 species 0 species 879 1 120107 Sphingobium cloacae 1 0 557 species 76947 Sphingobium herbicidovorans 0 species 790 1 332056 Sphingobium japonicum Sphingobium hydrophobicum 1673076 species 0 1245 1 13690 Sphingobium yanoikuyae 1 986 0 species Rhizorhabdus 21 1649486 0 883 genus 2 1 Rhizorhabdus dicambivorans 1850238 0 species 862 1 165697 117 Sphingopyxis 1 10 0 5975 genus Sphingopyxis alaskensis 117207 0 species 500 1 2614943 0 no rank 2210 4 1913578 Sphingopyxis sp. LPB0140 1 species 0 365 Sphingopyxis sp. QXT-31 1357916 1 705 0 species 1866325 Sphingopyxis sp. MG 1 0 613 species Sphingopyxis sp. 113P3 292913 527 0 species 1 0 405 species 1 1515612 Sphingopyxis fribergensis Sphingopyxis granuli 267128 species 0 988 1 33050 Sphingopyxis macrogoltabida 0 1408 species 1 1 347 0 species 33052 Sphingopyxis terrae genus 0 698 1 2685927 species 0 698 1 Sphingomonas sp. JJ-A5 1921510 5 1 genus 0 3313 165696 97 Novosphingobium 205844 Novosphingobium pentaromativorans 1 species 0 725 48935 Novosphingobium aromaticivorans 918 0 species 1 0 896 species 1 Novosphingobium resinovorum 158500 2644732 0 677 no rank 1 702113 Novosphingobium sp. PP1Y 0 677 species 1 1 15 0 11896 genus Sphingomonas 235 13687 no rank 0 4588 6 196159 Sphingomonas sp. KC8 1030157 0 677 species 1 780 0 species 1 1390395 Sphingomonas sp. LK11 745310 Sphingomonas sp. MM-1 0 species 776 1 0 968 species 1 Sphingomonas sp. NIC1 1961362 1938607 Sphingomonas sp. LM7 682 0 species 1 1327635 Sphingomonas sp. Cra20 0 705 species 1 1 0 species 1150 Sphingomonas sanxanigenens 397260 1 0 species 1082 Sphingomonas melonis 152682 1560345 Sphingomonas panacis 0 760 species 1 778 160791 Sphingomonas wittichii 1 2 species 0 1577 strain 0 799 1 Sphingomonas sp. DC-6 1283312 Sphingomonas taxi 1549858 1 species 0 783 1609977 Sphingomonas hengshuiensis 1 852 0 species 0 species 869 1 Sphingomonas koreensis 93064 150203 3 Blastomonas 2 1 0 genus 875 1 0 no rank 872 2626550 1 0 872 species Blastomonas sp. RAC04 1842535 2 72173 Citromicrobium 2 1 0 genus 417 2630544 no rank 0 415 1 Citromicrobium sp. JL477 1634516 0 415 species 1 541 1 0 genus 955 1 0 955 species Zymomonas mobilis 542 2709685 1 0 589 genus 266812 Sphingorhabdus flavimaris 0 species 589 1 1 20 0 14534 order Caulobacterales 204458 148 Caulobacteraceae 146 76892 19 1 0 family 14386 81440 0 351 no rank 1 1759059 Caulobacteraceae bacterium OTSz_A_272 1 351 0 species Phenylobacterium 11 20 0 genus 1223 1 2 1 0 1212 species Phenylobacterium zucineum 284016 0 4972 genus 1 7 131 41275 Brevundimonas 0 no rank 2202 3 2622653 0 790 species 1 1938605 Brevundimonas sp. LM2 1 0 655 species Brevundimonas sp. GW460-12-10-14-LB2 1827469 1532555 Brevundimonas sp. DS20 1 757 0 species 1 0 species 1140 74313 Brevundimonas subvibrioides 1 0 species 796 Brevundimonas naejangsanensis 588932 41276 Brevundimonas vesicularis 1 0 species 703 Asticcacaulis 69 76890 0 858 genus 1 2 1 789 0 species Asticcacaulis excentricus 78587 75 92 Caulobacter 6 1 0 6836 genus 2648921 1 0 1584 no rank 366602 Caulobacter sp. K31 1 0 1584 species 1 species 0 1899 155892 Caulobacter vibrioides 69666 Caulobacter mirabilis 1 1393 0 species 1 species 0 920 69395 Caulobacter henricii Caulobacter segnis 88688 1 species 0 948 2 1921002 Holosporales 0 order 977 1 6 9 2100208 Caedimonadaceae 0 family 414 1 2 0 genus 405 1 1509243 1509244 Candidatus Nucleicultrix amoebiphila 0 405 species 1 1777752 2 0 330 family Candidatus Paracaedibacter 2 1521255 1 2 genus 0 330 Candidatus Paracaedibacter acanthamoebae 91604 0 species 328 1 1 family 0 231 44746 204454 1 0 231 no rank endosymbiont of Acanthamoeba sp. UWC8 86106 0 species 231 1 Rhodobacterales 204455 431 0 order 64097 1 89 0 63666 family 88 1 Rhodobacteraceae 31989 1295 263377 genus 0 2732 2 2640570 1 0 1235 no rank 1792508 Yangia sp. CCB-MM3 1 0 1235 species 0 1497 species 1 1229727 Thiobacimonas profunda 4 188905 Jannaschia 0 745 genus 2 1 2645469 1 0 741 no rank Jannaschia sp. CCS1 290400 1 741 0 species 1 3 genus 0 2230 60136 6 Sulfitobacter 196795 1 1007 0 no rank 1 1007 0 species 1917485 Sulfitobacter sp. AM1-D1 1 species 0 1217 Sulfitobacter pseudonitzschiae 1402135 1759396 1 601 0 genus 0 no rank 601 1 2622455 1920883 Marivivens sp. JLT3646 0 species 601 1 4 53945 Octadecabacter 1 4 0 1028 genus 0 species 352 1 Octadecabacter antarcticus 1217908 Octadecabacter arcticus 53946 1 species 0 415 1 species 0 257 Octadecabacter temperatus 1458307 159345 1 649 0 genus 1 649 0 species 159346 Roseibacterium elongatum 58840 no rank 0 1426 2 0 737 species 1 2033435 Rhodobacteraceae bacterium QY30 Rhodobacteraceae bacterium 1904441 0 species 689 1 1 9 0 genus 9816 Paracoccus 158 265 34003 Paracoccus aminophilus 1 0 1156 species Paracoccus denitrificans 266 1 0 1575 species 1 1003 0 species Paracoccus sp. CBA4604 2065379 246570 0 no rank 1017 1 1 0 species 1017 1529068 Paracoccus sp. BM15 Paracoccus aminovorans 34004 1 0 species 1238 1 0 species 1192 1077935 Paracoccus zhejiangensis 1725 0 species 1 147645 Paracoccus yeei 1 0 752 species Paracoccus contaminans 1945662 0 1171 genus 1 2 20 367771 Marinovum 0 species 1151 1 42444 Marinovum algicola genus 0 991 1 1649279 379347 Ruegeria mobilis 1 991 0 species 0 genus 2793 1 4 64 478070 Labrenzia 791 0 species 1 Labrenzia aggregata 187304 2648686 0 1938 no rank 2 Labrenzia sp. CP4 1674922 species 0 844 1 1 1094 0 species 2021862 Labrenzia sp. VG12 1 119541 Rhodobaca genus 0 542 1 2 species 0 541 1 Rhodobaca barguzinensis 441209 967 0 genus 1 2 12 191028 Leisingera 133924 Leisingera methylohalidivorans 0 species 955 1 2 1 0 genus 2222 17 227873 Pannonibacter 121719 Pannonibacter phragmitetus 1 0 species 2205 1 1351 0 genus 58842 2624628 1351 0 no rank 1 Sagittula sp. P11 2009329 1 species 0 1351 302485 64 Phaeobacter 5 1 genus 0 6183 1 0 species 422 1844006 Phaeobacter porticola 1 0 1868 species Phaeobacter gallaeciensis 60890 1 1551 0 species Phaeobacter piscinae 1580596 221822 Phaeobacter inhibens species 0 2278 1 2 1 1194 0 genus 1609958 28 Confluentimicrobium 2643318 1 1166 0 no rank 0 1166 species 1 1609966 Confluentimicrobium sp. EMB200-NS6 Defluviimonas 12 1097466 1608 0 genus 1 2 1 0 1596 species Defluviimonas alba 1335048 1 1045 0 genus 74032 1 species 0 1045 Antarctobacter heliothermus 74033 360528 10 Pelagibaca 0 911 genus 2 1 901 0 species 1 Pelagibaca abyssi 1250539 genus 0 4033 1 4 34008 40 Rhodovulum 1 0 species 1888 35806 Rhodovulum sulfidophilum 2631432 2 0 2105 no rank 1 species 0 829 1564506 Rhodovulum sp. P5 Rhodovulum sp. MB263 308754 1276 0 species 1 1 2 302 0 genus 1 1284657 Planktomarina 1284658 Planktomarina temperata 301 0 species 1 1 2433 Roseobacter 0 genus 1386 1 3 Roseobacter litoralis 42443 1 0 673 species 0 species 712 1 2434 Roseobacter denitrificans 2 1 0 690 genus Roseovarius 74030 3 215743 Roseovarius mucosus 0 species 687 1 Ruegeria 97050 10 1 3 genus 0 1986 89184 Ruegeria pomeroyi 0 1243 species 1 1 no rank 0 733 2625375 292414 Ruegeria sp. TM1040 species 0 733 1 1579315 1 Halocynthiibacter 1 2 0 genus 205 Halocynthiibacter arcticus 1579316 species 0 204 1 2 285107 Thioclava 0 genus 854 1 2 1915078 Thioclava nitratireducens 1 0 species 852 Tateyamaria 5 299261 genus 0 497 1 2 299262 Tateyamaria omphalii species 0 492 1 0 genus 3022 5 1 Celeribacter 2 875170 0 species 678 1 Celeribacter ethanolicus 1758178 1397108 Celeribacter marinus 0 299 species 1 1 species 0 842 Celeribacter manganoxidans 1411902 1208324 Celeribacter indicus 1 species 0 1201 2211641 576 0 genus 1 1 576 0 species 245188 Loktanella vestfoldensis 1 0 2 genus Thalassococcus 436357 1 0 genus 1 245186 Loktanella 5 1 6154 0 genus 55 1060 Rhodobacter Rhodobacter capsulatus 1061 0 species 1194 1 1063 Rhodobacter sphaeroides species 0 3189 1 2 no rank 0 1716 196779 571 0 species 1 Rhodobacter sp. LPB0142 1850250 species 0 1145 1 Rhodobacter sp. CZR27 2033869 0 1482 genus 3 1 34 92944 Ketogulonicigenium species 0 771 1 Ketogulonicigenium vulgare 92945 0 species 677 1 Ketogulonicigenium robustum 92947 309512 0 976 genus 1 215813 Dinoroseobacter shibae 976 0 species 1 584 204441 Rhodospirillales 1 65 order 0 52810 family 0 33324 1 29 Rhodospirillaceae 499 41295 2829 0 genus 1 2 7 1543705 Nitrospirillum 28077 Nitrospirillum amazonense 0 2822 species 1 0 12085 genus 1 5 Azospirillum 191 185 species 0 4170 1 Azospirillum brasilense 192 1 0 species 1105 Azospirillum humicireducens 1226968 528244 Azospirillum thiophilum 0 species 2728 1 0 species 3897 1 Azospirillum lipoferum 193 731 0 genus 1 2 Magnetospira 3 1182780 2685734 no rank 0 728 1 1 0 728 species 1288970 Magnetospira sp. QH-2 1 3 0 2871 genus 15 168934 Thalassospira 0 species 1568 1 Thalassospira sp. CSC3H3 2048283 species 0 1288 1 220697 Thalassospira xiamenensis 36 1543704 Niveispirillum 0 genus 1510 2 1 Niveispirillum cyanobacteriorum 1612173 1 1474 0 species 0 genus 713 1 2 Pararhodospirillum 1612157 2 1084 Pararhodospirillum photometricum 711 0 species 1 1 373 0 genus 1804663 Haematospirillum jordaniae 1549855 1 373 0 species 0 591 genus 1 1263978 0 591 species 1 Candidatus Endolissoclinum faulkneri 1263979 genus 0 2466 1 3 Rhodospirillum 1081 9 0 species 1519 1 Rhodospirillum centenum 34018 0 species 938 1 1085 Rhodospirillum rubrum Magnetospirillum 13134 126 0 6711 genus 5 1 1 species 0 1670 55518 Magnetospirillum gryphiswaldense 2617991 2 0 no rank 3000 1 1711 0 species 1663591 Magnetospirillum sp. XM-1 1289 0 species 1 1639348 Magnetospirillum sp. ME-1 0 1915 species 1 84159 Magnetospirillum magneticum 62 171436 Tistrella 2 1 genus 0 1945 1 0 1883 species Tistrella mobilis 171437 Acetobacteraceae 363 433 1 35 family 0 18902 Roseomonas 125216 132 1 3 0 2985 genus no rank 0 1528 1 2617492 Roseomonas sp. FDAARGOS_362 2018065 1 1528 0 species 1 species 0 1325 257708 Roseomonas gilardii 0 2009 genus 1 3 Gluconobacter 441 16 0 species 1374 1 442 Gluconobacter oxydans 318683 Gluconobacter albidus 619 0 species 1 2 1 0 genus 988 Gluconacetobacter 89583 2 33996 Gluconacetobacter diazotrophicus 1 0 986 species 1208 0 genus 1 3 Acidiphilium 522 111 Acidiphilium cryptum 524 1 581 0 species 1 0 516 species Acidiphilium multivorum 62140 0 genus 697 2 1 11 153497 Kozakia 686 0 species 1 Kozakia baliensis 153496 1434011 104 Komagataeibacter 1 5 genus 0 3133 Komagataeibacter xylinus 28448 1 0 species 1466 Komagataeibacter medellinensis 1177712 439 0 species 1 Komagataeibacter europaeus 33995 1 525 0 species 1 0 599 species 265960 Komagataeibacter nataicola 2 1 genus 0 1544 Granulibacter 364409 36 Granulibacter bethesdensis 364410 1508 0 species 1 1 1602345 Parasaccharibacter 2 1 genus 0 480 Parasaccharibacter apium 1510841 1 0 479 species 1 2 445 0 genus Asaia 91914 6 1 439 0 species 91915 Asaia bogorensis 320496 5 Neoasaia 0 505 genus 2 1 Neoasaia chiangmaiensis 320497 species 0 500 1 39 434 Acetobacter 8 1 genus 0 4545 Acetobacter senegalensis 446692 1 0 651 species 1633874 Acetobacter oryzifermentans 0 424 species 1 Acetobacter pasteurianus 438 species 0 1314 1 0 species 800 1 104102 Acetobacter tropicalis Acetobacter pomorum 65959 1 0 293 species 488 0 species 1 Acetobacter persici 1076596 151157 1 0 536 subgenus 435 Acetobacter aceti 1 536 0 species order 0 145709 1 210 1982 356 Rhizobiales Hyphomicrobiaceae 45401 80 18 1 0 9774 family Filomicrobium 3 119044 1 2 319 0 genus species 0 316 1 1608628 Candidatus Filomicrobium marinum 0 779 genus 1 2 Pelagibacterium 10 1082930 Pelagibacterium halotolerans 531813 1 769 0 species 1 genus 0 575 1068 Rhodomicrobium vannielii 1069 575 0 species 1 genus 0 3707 4 1 116 46913 Devosia 196773 no rank 0 3591 3 1 species 0 1389 Devosia sp. H5989 1643450 0 species 1458 1 Devosia sp. A16 1736675 Devosia sp. I507 2083786 0 744 species 1 1 2 1281 0 genus 59282 27 Blastochloris 1079 Blastochloris viridis 1 0 species 1254 2 1 0 genus 1104 29407 40 Rhodoplanes 2619116 1064 0 no rank 1 0 species 1064 1 674703 Rhodoplanes sp. Z2-YC6860 Hyphomicrobium 81 22 genus 0 1929 1 4 1 species 0 705 53399 Hyphomicrobium denitrificans 2619925 556 0 no rank 1 Hyphomicrobium sp. MC1 717785 0 species 556 1 1427356 Hyphomicrobium nitrativorans 1 0 646 species 1 26 family 0 26119 Bradyrhizobiaceae 41294 462 0 427 genus 1 2 Variibacter 4 1649510 1 0 423 species 1333996 Variibacter gotjawalensis 0 genus 13398 11 1 378 374 Bradyrhizobium Bradyrhizobium icense 1274631 0 species 643 1 1777 0 species 1 Bradyrhizobium japonicum 375 Bradyrhizobium oligotrophicum 44255 0 species 1427 1 2631580 0 no rank 7405 6 Bradyrhizobium sp. 376 1192 0 species 1 0 species 1673 1 115808 Bradyrhizobium sp. ORS 285 1 0 953 species 288000 Bradyrhizobium sp. BTAi1 2057741 Bradyrhizobium sp. SK17 0 1395 species 1 114615 Bradyrhizobium sp. ORS 278 1 0 1169 species 1 0 species 1023 1223566 Bradyrhizobium sp. CCGE-LA001 Bradyrhizobium diazoefficiens 1355477 1 1768 0 species 2 1 genus 0 530 40136 4 Oligotropha 1 0 526 species Oligotropha carboxidovorans 40137 1 2 5668 0 genus Rhodopseudomonas 1073 93 0 5575 species 1 Rhodopseudomonas palustris 1076 85413 51 Bosea 0 4721 genus 1 5 1526658 Bosea vaviloviae 1 species 0 1276 2653178 0 no rank 3394 3 0 species 1430 1 1842539 Bosea sp. RAC05 1792307 Bosea sp. PAMC 26642 0 species 870 1 Bosea sp. AS-1 2015316 1 1094 0 species 23 911 Nitrobacter 913 0 genus 3 1 Nitrobacter winogradskyi 913 0 286 species 1 912 Nitrobacter hamburgensis 1 species 0 604 18 1 0 family 6861 13 772 Bartonellaceae 773 81 Bartonella 0 6848 genus 1 17 33045 Bartonella grahamii 1 610 0 species 803 Bartonella quintana 0 272 species 1 1 0 228 species Bartonella ancashensis 1318743 2645622 0 2236 no rank 6 1 0 343 species Bartonella sp. JB63 1933907 Bartonella sp. 1-1C 515256 0 species 421 1 1933906 Bartonella sp. JB15 345 0 species 1 1 376 0 species Bartonella sp. A1379B 1933910 1 species 0 351 1933912 Bartonella sp. Raccoon60 1 0 species 400 Bartonella sp. WD16.2 1933904 1 0 species 419 38323 Bartonella henselae 1 0 species 498 56426 Bartonella clarridgeiae Bartonella bacilliformis 774 species 0 348 1 33047 Bartonella vinsonii 1 0 species 333 Bartonella tribocorum 85701 535 0 species 1 388640 Bartonella australis 0 species 225 1 1686310 Bartonella apis 1 species 0 1063 0 family 18641 1 15 Methylobacteriaceae 119045 244 1 2 1385 0 genus 16 186650 Microvirga Microvirga ossetica 1882682 1 0 species 1369 527 407 Methylobacterium 10631 0 genus 9 1 1 species 0 1000 Methylobacterium oryzae 334852 species 0 1440 1 31998 Methylobacterium radiotolerans 1 965 0 species 418223 Methylobacterium phyllosphaerae 270351 Methylobacterium aquaticum 1 species 0 1732 species 0 1282 1 114616 Methylobacterium nodulans 3 0 3685 no rank 2615210 Methylobacterium sp. 4-46 426117 0 1490 species 1 1 1117 0 species 1479019 Methylobacterium sp. C1 Methylobacterium sp. AMS5 925818 species 0 1078 1 2282523 genus 0 6381 3 29429 Methylobacterium zatmanii species 0 903 1 Methylobacterium populi 223967 1 0 1850 species 408 Methylobacterium extorquens 1 species 0 3628 20 1 family 0 14412 69277 119 Phyllobacteriaceae 16 31988 Aminobacter 1458 0 genus 1 2 Aminobacter aminovorans 83263 1 1442 0 species 660 0 genus 2 1 28100 2 Phyllobacterium species 0 658 1 1867719 Phyllobacterium zundukense Chelativorans 449972 16 1 2 0 genus 606 2643807 590 0 no rank 1 Chelativorans sp. BNC1 266779 1 species 0 590 274591 2 Hoeflea 1 2 0 750 genus 0 748 no rank 1 2614931 1 0 748 species Hoeflea sp. IMCC20628 1620421 0 genus 735 1 2 Nitratireductor 245876 78 0 species 657 1 Nitratireductor basaltis 472175 0 10084 genus 1 9 Mesorhizobium 408 68287 536018 Mesorhizobium australicum 0 species 1026 1 1 890 0 species 71433 Mesorhizobium amorphae 0 species 1458 1 Mesorhizobium japonicum 2066070 Mesorhizobium opportunistum 593909 1 0 species 1143 0 688 species 1 1670800 Mesorhizobium sp. B7 1 0 1317 species Mesorhizobium loti 381 325217 1368 0 no rank 1 1 0 species 1368 278153 Mesorhizobium sp. WSM1497 Mesorhizobium ciceri 39645 0 species 1786 1 0 no rank 2164 6 119042 Methyloceanibacter 23 1484898 genus 0 717 1 2 1384459 Methyloceanibacter caenitepidi 1 0 694 species 0 genus 499 1 2 Pseudorhodoplanes 1734920 23 476 0 species 1 Pseudorhodoplanes sinuspersici 1235591 2 1 0 948 genus 1572860 1 Hartmannibacter 0 species 947 1 1482074 Hartmannibacter diazotrophicus 1 4 0 2252 family 30 2036754 Chelatococcaceae Chelatococcus 28209 50 0 2222 genus 3 1 Chelatococcus daeguensis 444444 0 species 967 1 1 no rank 0 1205 2638111 Chelatococcus sp. CO-6 1702325 0 1205 species 1 1 6 0 1663 family 17 31993 Methylocystaceae 0 genus 731 2 1 Methylosinus 425 15 Methylosinus trichosporium 426 0 species 716 1 Methylocystis 133 19 genus 0 915 1 3 0 species 477 1 Methylocystis bryophila 655015 2625913 no rank 0 419 1 0 species 419 1 Methylocystis sp. SC2 187303 0 1084 family 1 5 1 45404 Beijerinckiaceae Methylocella 5 120652 2 1 0 genus 664 1 0 659 species Methylocella silvestris 199596 Beijerinckia 532 1 1 2 0 419 genus Beijerinckia indica 533 0 418 species 1 Aurantimonadaceae 16 255475 0 4586 family 7 1 0 3494 genus 1 4 293088 63 Martelella 1 0 1135 no rank 2629616 Martelella sp. AD-3 686597 1 species 0 1135 1 0 1279 species 1486262 Martelella endophytica Martelella mediterranea 293089 1 0 1017 species 414371 11 Aureimonas 1076 0 genus 2 1 1 no rank 0 1065 2615206 Aureimonas sp. AU20 1349819 1 0 species 1065 Rhizobiaceae 678 82115 54 1 45718 0 family 33583 0 no rank 35 227290 2 1 0 1575 genus 1525371 6 Neorhizobium 1 0 1569 species 399 Neorhizobium galegae Rhizobium 379 1568 1 26 23221 0 genus 1361 0 species 1 396 Rhizobium phaseoli 29449 Rhizobium etli 1 2502 0 species Rhizobium gallicum 56730 1283 0 species 1 species 0 897 1 Rhizobium tropici 398 2613769 0 10279 no rank 20 1 species 0 604 Rhizobium sp. CIAT894 2020312 0 species 575 1 1125847 Rhizobium sp. NT-26 1 0 species 208 1703961 Rhizobium sp. N1314 1703965 Rhizobium sp. N6212 0 species 11 1 Rhizobium sp. NXC24 2048897 1 species 0 1012 Rhizobium sp. IE4771 1301032 0 512 species 1 species 0 468 1 2020311 Rhizobium sp. Kim5 20 0 species 1 Rhizobium sp. N1341 1703962 1 22 0 species 1703967 Rhizobium sp. N741 921 0 species 1 1914541 Rhizobium sp. Y9 Rhizobium sp. N871 1703968 1 species 0 18 species 0 11 1 Rhizobium sp. N621 1703964 1703966 Rhizobium sp. N731 1 0 208 species 1703969 Rhizobium sp. N324 882 0 species 1 Rhizobium sp. S41 1869170 1 species 0 932 1 species 0 194 2020313 Rhizobium sp. TAL182 1 species 0 930 424182 Rhizobium sp. IRBG74 Rhizobium sp. NXC14 1981173 1 0 869 species 1 species 0 1156 1571470 Rhizobium sp. ACO-34A 0 726 species 1 Rhizobium sp. 10195 2028343 1 0 species 5331 384 Rhizobium leguminosarum Agrobacterium 357 173 0 8787 genus 1 7 2632611 2 0 no rank 1977 Agrobacterium sp. RAC06 1842536 1 species 0 790 861208 Agrobacterium sp. H13-3 1 0 1187 species 2 0 4818 species group 1183400 1 0 species 4032 358 Agrobacterium tumefaciens Agrobacterium fabrum 1176649 species 0 786 1 373 Agrobacterium vitis 1 0 891 species 359 Agrobacterium rhizogenes 928 0 species 1 6 1 0 genus 1256 34019 7 Liberibacter 1 0 209 species Candidatus Liberibacter africanus 34020 1 0 299 species Candidatus Liberibacter americanus 309868 Candidatus Liberibacter solanacearum 556287 1 0 209 species Candidatus Liberibacter asiaticus 34021 1 0 105 species 0 427 species 1 Liberibacter crescens 1273132 Shinella 31 323620 genus 0 1603 2 1 no rank 0 1572 1 2643062 Shinella sp. HZN7 879274 1 species 0 1572 227292 10 0 no rank 8598 genus 0 1649 3 1 Ensifer 106591 6 106592 Ensifer adhaerens 1 species 0 762 716925 Ensifer sojae 1 species 0 881 7 1 genus 0 6949 Sinorhizobium 110 28105 Sinorhizobium americanum 194963 1050 0 species 1 1 0 species 1667 382 Sinorhizobium meliloti 2613772 2 1501 0 no rank 554 0 species 1 Sinorhizobium sp. CCBAU 05631 794846 Sinorhizobium sp. RAC02 1842534 1 species 0 947 1 679 0 species 110321 Sinorhizobium medicae species group 0 1942 1 663276 0 species 1942 1 380 Sinorhizobium fredii 1 20 0 5287 family 22 118882 Brucellaceae Ochrobactrum 26 528 0 2917 genus 1 5 1 671 0 species 271865 Ochrobactrum sp. A44 1 825 0 species Ochrobactrum pituitosum 571256 0 700 species 1 Ochrobactrum anthropi 529 Ochrobactrum pseudogrignonense 419475 0 695 species 1 1 14 0 genus 2348 Brucella 234 929 1 species 0 39 235 Brucella abortus Brucella vulpis 981386 1 187 0 species 0 54 species 1 Brucella ovis 236 69 0 species 1 Brucella suis 29461 1 species 0 60 Brucella melitensis 29459 1 species 0 153 Brucella ceti 120577 Brucella pinnipedialis 120576 0 155 species 1 2632610 no rank 0 559 4 Brucella sp. 2002734562 1891098 0 35 species 1 1885919 Brucella sp. 141012304 1 species 0 236 1844051 Brucella sp. 09RB8910 species 0 138 1 Brucella sp. 09RB8471 1149952 150 0 species 1 86 0 species 1 Brucella canis 36855 444163 Brucella microti 1 0 57 species Rhodobiaceae 1 119043 3 1 family 0 470 256616 16 Parvibaculum 0 genus 469 1 2 Parvibaculum lavamentivorans 256618 1 453 0 species 7 1 4696 0 family Xanthobacteraceae 36 335928 1 2 0 1668 genus Azorhizobium 6 30 Azorhizobium caulinodans 7 1 species 0 1638 24 152053 Starkeya 0 1253 genus 1 2 1 0 species 1229 Starkeya novella 921 1 2 1739 0 genus 22 279 Xanthobacter 280 Xanthobacter autotrophicus species 0 1717 1 255473 132 0 order 3 3 1 0 132 family Parvularculaceae 255474 10 122 0 genus 1 2 1 208215 Parvularcula Parvularcula bermudensis 208216 121 0 species 1 Magnetococcales 1191478 6 1 4 0 629 order 1 3 0 family 623 Magnetococcaceae 1 1191479 0 622 genus 2 1 Magnetococcus 1 162171 Magnetococcus marinus 1124597 1 0 species 621 Pelagibacterales 54526 6 order 0 2508 7 1 genus 0 356 1 2045213 356 0 species 1 1925548 Candidatus Fonsibacter ubiquis 2146 0 family 1 5 Pelagibacteraceae 5 1655514 2 0 no rank 1236 1655516 0 733 species 1 alpha proteobacterium HIMB5 859653 503 0 species 1 744985 alpha proteobacterium HIMB59 0 905 genus 2 198251 198252 Candidatus Pelagibacter ubique 1 species 0 508 no rank 0 397 1 2647897 species 0 397 1 1002672 Candidatus Pelagibacter sp. IMCC9063 8 0 3904 no rank 82117 0 clade 364 2 62654 Candidatus Puniceispirillum 767891 1 0 364 genus 1 2 363 0 species 1 767892 Candidatus Puniceispirillum marinum Polymorphum 991903 5 0 1117 genus 2 1 0 species 1112 1 991904 Polymorphum gilvum 50 1632780 Phreatobacter 0 genus 1598 2 1 1548 0 species 1 Phreatobacter sp. S-12 1868589 Micavibrio 3 213485 825 0 genus 1 2 1 0 species 822 Micavibrio aeruginosavorus 349221 51 1 11654 0 order 766 10 Rickettsiales 1699067 0 605 no rank 1 605 0 species 1 1528098 Rickettsiales bacterium Ac37b 4828 0 family 1 22 1 942 Anaplasmataceae 0 genus 275 3 768 769 Anaplasma centrale 1 0 52 species 106179 1 0 90 species group 948 Anaplasma phagocytophilum 1 species 0 90 1 0 species 133 770 Anaplasma marginale 0 1493 tribe 8 952 genus 0 1493 8 1 Wolbachia 953 21 2640676 7 no rank 0 1472 0 82 species 1 Wolbachia endosymbiont of Onchocerca ochengi 100901 0 196 species 1 Wolbachia endosymbiont of Drosophila melanogaster 163164 Wolbachia endosymbiont of Onchocerca volvulus 77551 1 117 0 species Wolbachia endosymbiont of Drosophila simulans 77038 1 417 0 species 246273 Wolbachia endosymbiont of Cimex lectularius 0 species 240 1 224 0 species 1 66084 Wolbachia sp. wRi 80849 Wolbachia endosymbiont of Brugia malayi 0 species 196 1 1 4 823 0 genus Neorickettsia 33993 1 1 species 0 114 Neorickettsia sennetsu 951 214 0 species 1 950 Neorickettsia risticii 0 species 494 1 Neorickettsia helminthoeca 33994 1 6 genus 0 2236 3 943 Ehrlichia 106181 1 578 0 no rank 0 species 578 1 391036 Ehrlichia sp. HF 0 species group 1655 4 106178 779 Ehrlichia ruminantium 1 432 0 species 944 Ehrlichia canis species 0 356 1 Ehrlichia chaffeensis 945 1 0 species 517 Ehrlichia muris 35795 1 species 0 350 1328881 166 0 family 1 411566 1 genus 0 166 234827 Candidatus Midichloria mitochondrii 1 0 166 species 26 1 0 family 6045 775 2 Rickettsiaceae 2115980 671 0 genus 1 0 671 species 1 2115978 Candidatus Phycorickettsia trachydisci 33988 24 tribe 0 5372 1 0 genus 393 69474 Orientia tsutsugamushi 784 393 0 species 1 Rickettsia 386 780 1 23 4979 0 genus 2 859 0 species group 1129742 Rickettsia bellii 33990 0 418 species 1 Rickettsia canadensis 788 1 441 0 species species group 0 2229 17 114277 0 55 species 1 35790 Rickettsia japonica Rickettsia rickettsii 783 37 0 species 1 1 species 0 77 1105106 Rickettsia philipii 1 0 species 40 781 Rickettsia conorii Rickettsia felis 42862 0 282 species 1 243 0 species 1 786 Rickettsia akari 1 55 0 species Rickettsia montanensis 33991 species 0 80 1 35791 Rickettsia massiliae Rickettsia peacockii 47589 0 85 species 1 35788 Rickettsia africae 0 species 31 1 Rickettsia amblyommatis 33989 1 0 129 species 1 0 45 species 35794 Rickettsia slovaca 226665 Rickettsia heilongjiangensis 0 61 species 1 109232 Rickettsia monacensis 1 180 0 species 1 72 0 species Rickettsia rhipicephali 33992 Rickettsia australis 787 0 710 species 1 1 species 0 47 Rickettsia parkeri 35792 114292 1096 0 species group 2 785 Rickettsia typhi 1 0 576 species 0 520 species 1 782 Rickettsia prowazekii 0 no rank 409 1 114295 Rickettsia endosymbiont of Bemisia tabaci 337479 species 0 409 1 2800059 659 0 order 2 2800061 family 0 659 2 10 74317 Maricaulis 1 2 genus 0 659 0 649 species 1 74318 Maricaulis maris 0 1792 class 6 1807140 1 6 order 0 1792 56 225057 Acidithiobacillales 21 225058 Acidithiobacillaceae 1736 0 family 5 1 7 119977 Acidithiobacillus 0 1715 genus 1 4 33059 Acidithiobacillus caldus 1 0 422 species Acidithiobacillus ferrooxidans 920 species 0 627 1 160808 Acidithiobacillus ferrivorans 0 659 species 1 1506 0 class 1 6 580370 5 Zetaproteobacteria 0 order 1501 5 1 Mariprofundales 6 580371 Mariprofundaceae 580372 12 1 4 family 0 1495 0 1483 genus 1 3 377315 11 Mariprofundus 0 826 species 1 1921087 Mariprofundus ferrinatatus 646 0 species 1 1921086 Mariprofundus aestuarium 1 347 292591 0 class 777 28216 Betaproteobacteria 2677 80840 Burkholderiales 1 232 order 0 230675 80841 2 0 no rank 1486 1834205 Burkholderiales bacterium YL45 871 0 species 1 Burkholderiales bacterium GJ-E10 1469502 species 0 615 1 224471 0 13483 no rank 17 Roseateles 37 93681 2 1 0 1705 genus Roseateles depolymerans 76731 0 species 1668 1 1 1324 0 species 413882 [Polyangium] brachysporum 1 2 1067 0 genus Paucibacter 318147 16 2642959 0 1051 no rank 1 1051 0 species 1 Paucibacter sp. KCTC 42545 1768242 Thiomonas 32012 37 1 2 genus 0 1267 Thiomonas intermedia 926 1 0 1230 species 61 28067 Rubrivivax 2 1 0 1864 genus Rubrivivax gelatinosus 28068 1 0 species 1803 Leptothrix 17 88 2 1 0 1354 genus 34029 Leptothrix cholodnii 1337 0 species 1 75 212743 Rhizobacter 0 1708 genus 1 2 1633 0 species 1 946333 Rhizobacter gummiphilus 14 316612 Methylibium genus 0 1376 1 2 0 species 1362 1 Methylibium petroleiphilum 105560 28 65047 Mitsuaria 0 genus 1818 2 1 2648776 0 no rank 1790 1 1658665 Mitsuaria sp. 7 0 1790 species 1 1 84 0 82710 family Burkholderiaceae 119060 543 190 48736 Ralstonia 0 genus 10446 1 5 species 0 2260 1 Ralstonia pickettii 329 Ralstonia insidiosa 190721 0 species 1429 1 105219 Ralstonia mannitolilytica 1 species 0 1557 Ralstonia solanacearum 305 1 5010 0 species Pandoraea 93 93217 genus 0 6418 1 10 Pandoraea thiooxydans 445709 0 615 species 1 0 867 species 1 Pandoraea vervacti 656178 0 species 1096 1 Pandoraea oxalativorans 573737 Pandoraea faecigallinarum 656179 0 species 674 1 species 0 544 1 Pandoraea norimbergensis 93219 1 0 513 species 93221 Pandoraea pulmonicola 1 0 species 715 Pandoraea apista 93218 1 0 species 636 93222 Pandoraea sputorum 93220 Pandoraea pnomenusa 1 species 0 665 9 1 0 genus 13025 Cupriavidus 493 106589 1 0 species 2598 Cupriavidus necator 106590 2 0 no rank 3548 2640874 1 species 0 1661 Cupriavidus sp. USMAHM13 1389192 0 1887 species 1 876364 Cupriavidus sp. USMAA2-4 68895 Cupriavidus basilensis 0 1193 species 1 1 1083 0 species Cupriavidus metallidurans 119219 367825 Cupriavidus sp. USMAA1020 1 1877 0 species 1074 0 species 1 Cupriavidus pinatubonensis 248026 0 1159 species 1 Cupriavidus gilardii 82541 3 44013 Polynucleobacter 0 820 genus 4 1 Polynucleobacter asymbioticus 576611 species 0 313 1 0 species 274 1 Polynucleobacter duraquae 1835254 1 species 0 230 576610 Polynucleobacter necessarius 2571159 1 0 genus 300 0 species 300 1 412963 Paraburkholderia rhizoxinica 0 893 genus 1 1827195 0 species 893 1 Burkholderia sp. RPE64 758793 Paraburkholderia 1822464 239 1 12 0 genus 10322 Paraburkholderia terrae 311230 1 799 0 species 252970 Paraburkholderia phenoliruptrix 1 species 0 603 2615204 1 no rank 0 877 1926494 Paraburkholderia sp. SOS3 0 877 species 1 702 0 species 1 Paraburkholderia xenovorans 36873 Paraburkholderia phytofirmans 261302 1 890 0 species 1 0 1135 species Paraburkholderia sprentiae 948107 2026199 Paraburkholderia aromaticivorans 0 species 758 1 Paraburkholderia fungorum 134537 species 0 1118 1 169430 Paraburkholderia hospita 1 0 species 874 0 species 1038 1 Paraburkholderia phymatum 148447 Paraburkholderia caribensis 75105 0 species 1289 1 1636 32008 Burkholderia 1 41 0 39943 genus 1 species 0 2204 Burkholderia glumae 337 0 no rank 6301 11 2613784 1 0 778 species Burkholderia sp. RPE67 758796 640512 Burkholderia sp. CCGE1003 1 676 0 species 1795043 Burkholderia sp. PAMC 26561 1 338 0 species 1 0 464 species 1740162 Burkholderia sp. Bp5365 species 0 496 1 640510 Burkholderia sp. CCGE1001 0 853 species 1 1097668 Burkholderia sp. YI23 Burkholderia sp. KJ006 416344 1 species 0 577 0 441 species 1 1795874 Burkholderia sp. PAMC 28687 1468409 Burkholderia sp. 2002721687 species 0 490 1 Burkholderia sp. HB1 1678678 1 669 0 species 1 519 0 species Burkholderia sp. Bp7605 1740163 19 0 species group 20774 87882 95486 Burkholderia cenocepacia 1 0 species 3427 Burkholderia pseudomultivorans 1207504 species 0 637 1 Burkholderia vietnamiensis 60552 1 species 0 940 488446 Burkholderia latens 1 0 719 species 1 species 0 840 Burkholderia lata 482957 87883 Burkholderia multivorans species 0 1292 1 3607 0 species 1 292 Burkholderia cepacia 1 437 0 species Burkholderia territorii 1503055 0 644 species 1 Burkholderia stagnalis 1503054 60550 Burkholderia pyrrocinia 1 species 0 594 95485 Burkholderia stabilis 1255 0 species 1 488732 Burkholderia diffusa 446 0 species 1 Burkholderia ambifaria 152480 1 956 0 species Burkholderia metallica 488729 species 0 526 1 488731 Burkholderia seminalis 539 0 species 1 [Pseudomonas] mesoacidophila 265293 759 0 species 1 Burkholderia contaminans 488447 1 0 species 436 0 726 species 1 152500 Burkholderia dolosa 0 species 1994 1 101571 Burkholderia ubonensis 41899 Burkholderia plantarii 0 species 1299 1 111527 0 species group 5429 7 342113 Burkholderia oklahomensis 1 510 0 species 1 1330 0 species 57975 Burkholderia thailandensis Burkholderia sp. MSMB0266 1637837 1 0 species 476 1 0 403 species 1637831 Burkholderia sp. MSMB617WGS 0 1772 species 1 Burkholderia pseudomallei 28450 Burkholderia mallei 13373 1 0 species 461 0 477 species 1 Burkholderia sp. MSMB0852 1637841 Burkholderia gladioli 28095 1 0 species 2300 0 58382 family 1 58 Comamonadaceae 80864 974 Verminephrobacter 17 364316 0 1100 genus 1 2 364317 Verminephrobacter eiseniae species 0 1083 1 1 genus 0 1607 2678886 2116657 Melaminivora sp. SC2-7 1607 0 species 1 1 2 1698 0 genus 201096 42 Alicycliphilus 179636 Alicycliphilus denitrificans 0 species 1656 1 Ottowia 2 219181 2635 0 genus 1 3 0 1111 no rank 1 2645081 1 0 species 1111 Ottowia sp. oral taxon 894 1658672 2109914 Ottowia sp. KADR8-3 0 species 1522 1 5 1 genus 0 3948 Rhodoferax 85 28065 0 1004 species 1 1484693 Rhodoferax saidenbachensis Rhodoferax koreense 1842727 1 0 species 1326 0 816 species 1 Rhodoferax ferrireducens 192843 717 0 species 1 81479 Rhodoferax antarcticus 63 1649468 Melaminivora 2 1 genus 0 1254 2641902 1 0 no rank 1191 Melaminivora sp. SC2-9 2109913 1 1191 0 species 9 1 0 genus 10171 Acidovorax 12916 324 4 0 5273 no rank 2684926 0 species 1032 1 1858609 Acidovorax sp. T1 232721 Acidovorax sp. JS42 0 species 1075 1 1842533 Acidovorax sp. RAC01 1 0 species 1479 Acidovorax sp. KKS102 358220 1 0 species 1687 Acidovorax citrulli 80869 0 species 1196 1 1400 0 species 1 80867 Acidovorax avenae Acidovorax ebreus 721785 1 0 species 907 1 0 1071 species 553814 Acidovorax sp. NA3 1 2 genus 0 369 Candidatus Symbiobacter 3 1436289 Candidatus Symbiobacter mobilis 1436290 0 366 species 1 Polaromonas 13 52972 1 3 0 2207 genus 2638319 no rank 0 1110 1 Polaromonas sp. JS666 296591 0 species 1110 1 1 0 species 1084 216465 Polaromonas naphthalenivorans genus 0 5334 4 1 Comamonas 45 283 0 species 1198 1 225992 Comamonas kerstersii 0 species 2898 1 Comamonas testosteroni 285 Comamonas serinivorans 1082851 1 0 species 1193 1 5 0 7758 genus 252 80865 Delftia 1 species 0 1883 80866 Delftia acidovorans Delftia tsuruhatensis 180282 0 1935 species 1 0 3688 no rank 2 2613839 1 0 species 1827 Delftia sp. HK171 1920191 species 0 1861 1 742013 Delftia sp. Cs1-4 238749 1 0 1108 genus 1546149 Diaphorobacter polyhydroxybutyrativorans 1 0 1108 species Limnohabitans 1 665874 3 1 1226 0 genus no rank 0 1225 2 2626134 0 species 961 1 Limnohabitans sp. 63ED37-2 1678128 1678129 Limnohabitans sp. 103DPR2 0 species 264 1 2 1 genus 0 879 14 352450 Simplicispira 0 species 865 1 2109915 Simplicispira sp. SC1-8 1 2 genus 0 2796 174951 28 Ramlibacter 94132 Ramlibacter tataouinensis 1 2768 0 species 0 1800 genus 2 2490452 1 1013 0 species 1458426 Comamonadaceae bacterium B1 1458425 Comamonadaceae bacterium A1 1 0 species 787 5 1 genus 0 8044 178 34072 Variovorax 1344 0 species 1 Variovorax boronicumulans 436515 0 no rank 2834 2 663243 Variovorax sp. PMC12 2126319 1 0 species 1908 926 0 species 1 1795631 Variovorax sp. PAMC 28711 species 0 3688 1 34073 Variovorax paradoxus 26 47420 Hydrogenophaga 0 3474 genus 1 4 1763535 Hydrogenophaga crassostreae 1 0 777 species 2 2671 0 no rank 2610897 0 1537 species 1 Hydrogenophaga sp. PBC 795665 0 1134 species 1 Hydrogenophaga sp. RAC07 1842537 41 1 0 45121 family Alcaligenaceae 506 406 1 193 0 genus 1100891 1 species 0 193 Paenalcaligenes hominis 643674 0 genus 1287 1 2 359336 88 Castellaniella 1199 0 species 1 Castellaniella defragrans 75697 517 693 Bordetella 1 17 20302 0 genus 1 0 no rank 852 2630031 852 0 species 1 Bordetella sp. H567 1697043 1 0 species 520 Bordetella holmesii 35814 Bordetella genomosp. 6 463024 1 0 1387 species 1242 0 species 1 Bordetella genomosp. 8 1416806 0 1092 species 1 Bordetella trematum 123899 1 0 2481 species 518 Bordetella bronchiseptica Bordetella petrii 94624 878 0 species 1 463040 Bordetella genomosp. 13 species 0 1413 1 Bordetella parapertussis 519 0 1261 species 1 1 species 0 1618 Bordetella bronchialis 463025 903 0 species 1 463014 Bordetella flabilis 1471 0 species 1 Bordetella pseudohinzii 1331258 1 species 0 1183 1416803 Bordetella genomosp. 9 Bordetella hinzii 103855 species 0 1473 1 1 species 0 770 521 Bordetella avium 1 0 species 1065 520 Bordetella pertussis 90243 1 0 genus 463 463 0 species 1 90245 Oligella urethralis 0 782 genus 2 1 13 305976 Pusillimonas 2640016 769 0 no rank 1 Pusillimonas sp. T7-7 1007105 1 species 0 769 1 1472344 Basilea 2 1 0 396 genus 1472345 Basilea psittacipulmonis 1 395 0 species 1 2 1731 0 genus 507 17 Alcaligenes 1714 0 species 1 511 Alcaligenes faecalis 29574 genus 0 660 2 0 species 232 1 84590 Taylorella asinigenitalis 29575 Taylorella equigenitalis 1 428 0 species Advenella 6 290425 0 genus 1377 3 1 1 species 0 615 Advenella mimigardefordensis 302406 species 0 756 1 310575 Advenella kashmirensis genus 0 1329 1 2 16 1921582 Orrella 1851544 Orrella dioscoreae 0 species 1313 1 0 genus 16195 1 6 Achromobacter 585 222 0 species 1000 1 Achromobacter insolitus 217204 2626865 1 no rank 0 1634 Achromobacter sp. AONIH1 1758194 1 0 species 1634 217203 Achromobacter spanius 1 species 0 2443 1 species 0 6720 Achromobacter xylosoxidans 85698 1 3813 0 species Achromobacter denitrificans 32002 279 75682 Oxalobacteraceae 26816 0 family 29 1 1 6 0 6912 genus Herbaspirillum 265 963 0 1497 species 1 Herbaspirillum rubrisubalbicans 80842 1654 0 species 1 Herbaspirillum seropedicae 964 1 species 0 997 341045 Herbaspirillum hiltneri 0 species 1620 1 92645 Herbaspirillum frisingense 0 879 no rank 1 2624150 2025949 Herbaspirillum sp. meg3 species 0 879 1 0 4013 genus 1 4 202907 47 Collimonas 1 0 1172 species 158899 Collimonas fungivorans 1 0 1627 species Collimonas pratensis 279113 279058 Collimonas arenae 0 1167 species 1 Herminiimonas 303379 25 genus 0 696 1 3 Herminiimonas arsenitoxidans 1809410 0 272 species 1 1 0 399 species Herminiimonas arsenicoxydans 204773 237 149698 Massilia 7474 0 genus 6 1 0 no rank 3161 2 2609279 1707785 Massilia sp. WG5 0 species 1458 1 species 0 1703 1 1678028 Massilia sp. NR 4-1 1 1364 0 species Massilia putida 1141883 1 0 933 species Massilia sp. B2 2045208 Massilia sp. ZMN-3 2072590 1 1779 0 species 87 29580 Janthinobacterium 7 1 0 genus 6826 4 3888 0 no rank 2610881 Janthinobacterium sp. B9-8 1236179 1 0 545 species 0 species 968 1 1938606 Janthinobacterium sp. LM6 Janthinobacterium sp. Marseille 375286 0 species 817 1 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 0 1558 species 1 1232 0 species 55508 Janthinobacterium agaricidamnosum 1 0 species 1619 Janthinobacterium svalbardensis 368607 1 2 genus 0 616 846 1 Oxalobacter 615 0 species 1 847 Oxalobacter formigenes 345 206389 Rhodocyclales 15990 0 order 1 22 347 2008794 Zoogloeaceae 12 1 0 11083 family 12960 123 Azoarcus 4162 0 genus 1 5 species 0 1060 1 Azoarcus olearius 418699 Azoarcus sp. SY39 2067960 1 species 0 863 2116 0 no rank 2 2629479 0 species 996 1 748247 Azoarcus sp. KH32C 0 species 1120 1 198107 Azoarcus sp. CIB 33057 109 Thauera 6 1 0 6574 genus 928 0 species 1 59405 Thauera aromatica 1 987 0 species Thauera chlorobenzoica 96773 1 1637 0 species Thauera humireducens 1134435 2609274 2 no rank 0 2913 Thauera sp. K11 2005884 1 0 1244 species Thauera sp. MZ1T 85643 species 0 1669 1 Azonexaceae 2008795 29 1 3 0 family 1024 1 2 0 genus 995 8 73029 Dechloromonas 987 0 species 1 Dechloromonas aromatica 259537 75787 79 Rhodocyclaceae 1 6 family 0 3538 75788 no rank 0 836 1 1 0 species 836 Rhodocyclaceae bacterium 1898103 551759 19 Aromatoleum genus 0 703 2 1 0 species 684 1 Aromatoleum aromaticum 551760 genus 0 1920 1 2 Azospira 48 146937 1 1872 0 species 146939 Azospira oryzae 12 no rank 0 2818 119066 189384 0 genus 2 1 Candidatus Tremblaya princeps 189385 1 2 0 species 121 0 genus 1 1301080 1 0 121 species 1160784 Candidatus Nasuia deltocephalinicola Candidatus Profftella 1 1381133 0 200 genus 1 2 1 species 0 199 669502 Candidatus Profftella armatura Kinetoplastibacterium 15 33055 6 1 0 genus 1641 233181 Kinetoplastibacterium blastocrithidii 1 0 386 species 0 species 307 1 994696 Candidatus Kinetoplastibacterium oncopeltii 33056 Candidatus Kinetoplastibacterium crithidii 1 190 0 species 1 0 523 species Candidatus Kinetoplastibacterium desouzaii 994692 1 0 220 species Candidatus Kinetoplastibacterium galatii 994695 genus 0 854 1 2 Candidatus Accumulibacter 327159 80 Candidatus Accumulibacter phosphatis 327160 1 species 0 774 1 43 11963 0 order Nitrosomonadales 32003 163 4 2008790 Thiobacillaceae family 0 413 1 3 3 919 Thiobacillus 2 1 0 genus 409 1 0 406 species Thiobacillus denitrificans 36861 0 3670 family 1 12 Nitrosomonadaceae 206379 23 35798 8 Nitrosospira 4 1 1161 0 genus 1231 Nitrosospira multiformis 0 species 322 1 Nitrosospira lacus 1288494 1 352 0 species 0 479 species 1 35799 Nitrosospira briensis 0 2486 genus 1 7 Nitrosomonas 914 13 1 species 0 358 44574 Nitrosomonas communis no rank 0 734 2 2609265 261292 Nitrosomonas sp. Is79A3 1 species 0 409 Nitrosomonas sp. AL212 153948 1 325 0 species 0 469 species 1 Nitrosomonas europaea 915 44577 Nitrosomonas ureae 0 406 species 1 1 0 506 species Nitrosomonas eutropha 916 1 13 family 0 2975 Methylophilaceae 16 32011 Methylophilus 9 16 2 1 0 genus 439 2630143 1 0 no rank 430 1 0 430 species Methylophilus sp. TWE2 1662285 359407 0 696 genus 2 Methylotenera versatilis 1055487 0 414 species 1 359408 Methylotenera mobilis 1 282 0 species 0 503 genus 2 1 Methylobacillus 404 2 Methylobacillus flagellatus 405 0 501 species 1 4 1679002 Candidatus Methylopumilus 1 3 0 genus 510 Candidatus Methylopumilus planktonicus 1581557 1 220 0 species 1 286 0 species Candidatus Methylopumilus turicensis 1581680 81682 16 Methylovorus genus 0 811 1 3 0 species 450 1 266009 Methylovorus glucosotrophus 0 no rank 345 1 2634027 Methylovorus sp. MP688 887061 1 0 species 345 2772226 0 1101 family 4 3 1778653 Sulfuriferula 1 2 genus 0 606 2637784 0 603 no rank 1 species 0 603 1 Sulfuriferula sp. AH1 1985873 1 2 0 495 genus 5 935200 Sulfuricella 1 490 0 species Sulfuricella denitrificans 649841 2008793 152 Sterolibacteriaceae 1 5 family 0 2107 Methyloversatilis 7 378210 1 2 0 genus 802 795 0 no rank 1 2639971 1842540 Methyloversatilis sp. RAC08 0 795 species 1 Sulfuritalea 17 1054211 0 genus 1153 1 2 748811 Sulfuritalea hydrogenivorans 1 0 species 1136 90627 43 Gallionellaceae 0 family 1534 1 5 96 11 Gallionella 1 2 genus 0 584 1 0 species 573 Gallionella capsiferriformans 370405 Sideroxydans 14 314343 0 genus 907 1 2 Sideroxydans lithotrophicus 63745 species 0 893 1 1003 0 no rank 2 33809 Betaproteobacteria bacterium GR16-43 1904640 0 794 species 1 0 species 209 1 543913 beta proteobacterium CB 381 206351 Neisseriales 0 29365 order 1 35 166 1499392 Chromobacteriaceae 1 13 0 12790 family 2 1 0 1470 genus 30 168470 Laribacter 1 0 1440 species Laribacter hongkongensis 168471 Jeongeupia 5 885864 1 2 0 1221 genus 2619593 0 no rank 1216 1 Jeongeupia sp. USM3 1906741 1 0 species 1216 4 0 6405 no rank 90153 0 genus 6405 4 1 Chromobacterium 535 92 2641838 1 1983 0 no rank 1983 0 species 1 2059672 Chromobacterium sp. ATCC 53434 1 species 0 1883 536 Chromobacterium violaceum species 0 2447 1 1108595 Chromobacterium vaccinii 2 1 genus 0 1926 Pseudogulbenkiania 568394 32 1 0 no rank 1894 2642558 748280 Pseudogulbenkiania sp. NH8B 0 species 1894 1 Aquaspirillum 187 9 1 2 0 genus 1602 2620219 1 1593 0 no rank 0 1593 species 1 Aquaspirillum sp. LM1 1938604 1 21 0 family 16194 Neisseriaceae 481 181 1 12 genus 0 9864 Neisseria 130 482 528 0 species 1 490 Neisseria sicca 326523 Neisseria zoodegmatis 652 0 species 1 2623750 1951 0 no rank 2 0 1270 species 1 Neisseria sp. KEM232 655307 1853276 Neisseria sp. 10022 1 species 0 681 1 0 species 2527 Neisseria meningitidis 487 28091 Neisseria weaveri 0 388 species 1 Neisseria elongata 495 1 0 species 528 0 592 species 1 1853278 Neisseria sp. 10023 Neisseria gonorrhoeae 485 1 853 0 species 486 Neisseria lactamica 0 993 species 1 1 0 species 722 Neisseria mucosa 488 0 576 genus 1 2 1193515 1 Snodgrassella 1 species 0 575 1196083 Snodgrassella alvi 3 1 1174 0 genus Vitreoscilla 42 59 1 0 species 766 63 Vitreoscilla filiformis 366 0 no rank 1 2627922 Vitreoscilla sp. C1 96942 0 species 366 1 978 0 genus 1 538 539 Eikenella corrodens 1 species 0 978 0 no rank 569 1 421605 1 0 569 species 2052837 Neisseriaceae bacterium DSM 100970 71 1 0 genus 2852 Simonsiella muelleri 72 1 species 0 2852 200938 0 1217 phylum 5 3 118001 Chrysiogenetes 1217 0 class 5 1 order 0 1214 4 1 189769 20 Chrysiogenales 1 3 family 0 1194 Chrysiogenaceae 26 189770 Desulfurispirillum 393029 7 0 1168 genus 1 2 1 0 1161 species Desulfurispirillum indicum 936456 19013790 0 clade 1704 1783272 14316 0 phylum 1 44 Chloroflexi 2 200795 8 1 1396 0 class 189775 25 Thermomicrobia 0 subclass 1117 4 85000 1 4 1117 0 order Sphaerobacterales 5 85001 255728 3 0 1112 suborder 3 1 1112 0 family 2 85002 Sphaerobacteraceae Sphaerobacter 35 2056 1 2 1110 0 genus 0 species 1075 1 Sphaerobacter thermophilus 2057 189776 7 Thermomicrobiales 1 3 0 254 order 189777 1 Thermomicrobiaceae 2 1 247 0 family 499 1 0 246 genus species 0 246 1 Thermomicrobium roseum 500 1 8 0 class 2718 Dehalococcoidia 301297 26 6 670486 Dehalogenimonas 0 1089 genus 1 3 552810 Dehalogenimonas lykanthroporepellens 1 species 0 642 0 species 441 1 1839801 Dehalogenimonas formicexedens 1202465 order 0 1603 4 1 1202464 Dehalococcoidaceae 1 4 0 family 1603 0 genus 1602 3 1 Dehalococcoides 3 61434 Dehalococcoides mccartyi 61435 1 species 0 1235 237581 1 364 0 no rank 1522671 Dehalococcoides sp. UCH007 1 0 364 species 132 1382928 Ardenticatenia 2534 0 class 5 1 4 1 order 0 2402 Ardenticatenales 40 1382929 12 1382930 Ardenticatenaceae 0 2362 family 1 3 Candidatus Promineofilum 10 1988031 2350 0 genus 1 2 0 species 2340 1 1806508 Candidatus Promineofilum breve 4 475962 Caldilineae class 0 1290 1 5 1 4 order 0 1286 Caldilineales 39 475963 1 3 0 family 1247 1 475964 Caldilineaceae Caldilinea 12 233191 1246 0 genus 1 2 1 species 0 1234 Caldilinea aerophila 133453 1 7 class 0 3230 Anaerolineae 7 292625 Anaerolineales 292629 7 3223 0 order 1 6 292628 5 Anaerolineaceae family 0 3216 1 5 Brevefilum 2 2019482 1 2 0 713 genus 1986204 Brevefilum fermentans 0 711 species 1 0 genus 745 1 233189 167964 Anaerolinea thermophila 1 0 745 species 1753 0 no rank 1 1324991 1 species 0 1753 1889813 Anaerolineaceae bacterium oral taxon 439 Chloroflexia 13 32061 1 10 class 0 3146 Chloroflexales 32064 21 order 0 3133 1 9 1508595 suborder 0 1624 4 1 4 family 0 1624 Roseiflexaceae 1508635 4 120961 12 Roseiflexus 0 1620 genus 3 1 120962 Roseiflexus castenholzii 1 0 743 species 0 no rank 865 1 2609473 865 0 species 1 Roseiflexus sp. RS-1 357808 suborder 0 1488 4 1508594 4 0 family 1488 1106 Chloroflexus 1107 21 genus 0 1488 1 4 1 444 0 species Chloroflexus aggregans 152260 Chloroflexus aurantiacus 1108 512 0 1023 species 2 1 480224 Chloroflexus sp. Y-400-fl 1 511 0 strain 452 0 no rank 2 1859062 2 1 0 genus 452 29 262406 Thermobaculum Thermobaculum terrenum 166501 423 0 species 1 1297 36 0 30266 phylum 0 30266 class 1 36 Deinococci 188787 200 3 order 0 756 2762275 family 0 756 3 1 9 332247 Trueperaceae Truepera 20 332248 1 2 747 0 genus 1 727 0 species 332249 Truepera radiovictrix 118964 146 Deinococcales 1 15 17407 0 order 1 14 family 0 17261 226 183710 Deinococcaceae 17035 0 genus 1 13 Deinococcus 313 1298 309887 Deinococcus maricopensis 1 species 0 1061 Deinococcus actinosclerus 1768108 1 0 1675 species 1182568 Deinococcus puniceus 1 996 0 species 1 0 1256 no rank 2623546 1 species 0 1256 Deinococcus sp. NW-56 2080419 Deinococcus deserti 310783 species 0 931 1 1577 0 species 1 Deinococcus radiodurans 1299 Deinococcus soli Cha et al. 2016 1309411 1 1381 0 species Deinococcus gobiensis 502394 1 0 species 1823 1 0 706 species Deinococcus peraridilitoris 432329 Deinococcus swuensis 1182571 1 species 0 2124 68909 Deinococcus geothermalis 1179 0 species 1 2013 0 species 1 55148 Deinococcus proteolyticus Thermales 221 68933 0 order 11903 1 17 107 188786 Thermaceae 11682 0 family 1 16 1 8 6702 0 genus Thermus 357 270 271 Thermus aquaticus 1 0 species 932 1 538 0 species Thermus brockianus 56956 1 0 species 1038 Thermus oshimai 56957 Thermus parvatiensis 456163 1 665 0 species 1 0 no rank 689 2619321 689 0 species 1 Thermus sp. CCB_US3_UF1 1111069 1 species 0 1671 274 Thermus thermophilus 37636 Thermus scotoductus 812 0 species 1 1 2 0 913 genus 186191 15 Marinithermus 186192 Marinithermus hydrothermalis 0 species 898 1 2 1 0 genus 1594 6 208447 Oceanithermus Oceanithermus profundus 187137 species 0 1588 1 Meiothermus 12 65551 1 3 0 2366 genus 277 Meiothermus ruber species 0 1175 1 0 1179 species 1 52022 Meiothermus silvanus 148 0 71751 clade 1798711 71751 0 phylum 148 1 Cyanobacteria 1117 48 1 541 0 no rank 1983111 1 species 0 541 718217 cyanobacterium endosymbiont of Epithemia turgida 224 1890424 Synechococcales 0 28565 order 1 57 5 1 0 family 6448 2 1213 Prochloraceae Prochlorococcus 8 1218 6446 0 genus 4 1 1219 Prochlorococcus marinus 0 species 5285 1 2627481 2 1153 0 no rank Prochlorococcus sp. MIT 0604 1501268 0 625 species 1 528 0 species 1 Prochlorococcus sp. MIT 0801 1501269 Acaryochloridaceae 1 1890429 family 0 425 1 2 genus 0 424 1 155977 Acaryochloris marina 155978 0 species 424 1 0 550 family 2 2303730 2 1 550 0 genus Halomicronema 170610 1 0 549 species 1 1209493 Halomicronema hongdechloris Merismopediaceae 1890428 4 1655 0 family 1 5 Synechocystis 117 1142 0 1651 genus 1 4 2640012 3 0 no rank 1534 Synechocystis sp. IPPAS B-1465 2116702 0 species 530 1 1147 Synechocystis sp. PCC 6714 474 0 species 1 Synechocystis sp. PCC 6803 1148 1 0 530 species 0 family 15236 1 33 Synechococcaceae 1890426 62 Cyanobium 44 167375 1 3 0 genus 3698 1 0 species 1784 Cyanobium gracile 59930 2627006 1 0 no rank 1870 1 species 0 1870 1851505 Cyanobium sp. NIES-981 13034 374 0 genus 1 292566 Dactylococcopsis salina 0 374 species 1 1129 215 Synechococcus 1 26 10661 0 genus 9867 0 no rank 23 2626047 Synechococcus sp. WH 7803 32051 0 513 species 1 species 0 751 1 84588 Synechococcus sp. WH 8102 1 263 0 species 1827144 Synechococcus sp. NIES-970 1 0 161 species 32049 Synechococcus sp. PCC 7002 391 0 species 1 Synechococcus sp. KORDI-52 585425 1173263 Synechococcus sp. PCC 7502 333 0 species 1 Synechococcus sp. RCC307 316278 470 0 species 1 Synechococcus sp. SynAce01 1916956 1 658 0 species 0 species 435 1 Synechococcus sp. CC9605 110662 166314 Synechococcus sp. WH 8109 544 0 species 1 195498 Synechococcus sp. PCC 7117 1 227 0 species 1 0 species 514 321332 Synechococcus sp. JA-2-3B'a(2-13) 1 0 species 173 64471 Synechococcus sp. CC9311 Synechococcus sp. KORDI-49 585423 0 species 558 1 1 0 species 326 1350461 Synechococcus sp. UTEX 2973 0 species 427 1 Synechococcus sp. KORDI-100 1280380 374981 Synechococcus sp. PCC 7003 1 0 species 401 species 0 691 1 29410 Synechococcus sp. WH 8103 195253 Synechococcus sp. PCC 6312 1 395 0 species 1 species 0 995 Synechococcus sp. JA-3-3Ab 321327 1 0 species 184 Synechococcus sp. PCC 8807 195248 species 0 273 1 316279 Synechococcus sp. CC9902 Synechococcus sp. PCC 73109 374982 1 184 0 species 1 species 0 336 32046 Synechococcus elongatus 33070 Synechococcus lividus 243 0 species 1 0 genus 441 1 2 Thermosynechococcus 4 146785 Thermosynechococcus elongatus 146786 1 437 0 species 1 6 0 family 3612 105 1890438 Leptolyngbyaceae 1 5 0 3507 genus Leptolyngbya 10 47251 1 0 1693 species 1184 Leptolyngbya boryana 2650499 no rank 0 1804 3 1 496 0 species Leptolyngbya sp. NIES-3755 1752064 Leptolyngbya sp. PCC 7376 111781 0 species 472 1 Leptolyngbya sp. O-77 1080068 1 species 0 836 5 1890436 Pseudanabaenaceae family 0 415 3 1 80 1152 Pseudanabaena 0 410 genus 2 1 no rank 0 330 1 2593292 0 species 330 1 82654 Pseudanabaena sp. PCC 7367 0 17665 order 1 33 Nostocales 1161 49 family 0 4933 8 2661849 genus 0 4933 8 1 Calothrix 12 1186 869 0 species 1 32054 Calothrix parietina 2619626 6 4052 0 no rank 812 0 species 1 2005461 Calothrix sp. NIES-4101 0 species 531 1 99598 Calothrix sp. PCC 7507 1337936 Calothrix sp. 336/3 1 442 0 species 1 0 species 475 2005462 Calothrix sp. NIES-3974 1 0 1153 species 2005469 Calothrix sp. NIES-4071 species 0 639 1 1954171 Calothrix sp. NIES-2098 1 2 0 family 618 Hapalosiphonaceae 9 1892263 1190 0 609 genus 1 no rank 0 609 1 494603 1 0 species 609 1752063 Fischerella sp. NIES-3754 family 0 9868 18 1 Nostocaceae 1162 22 31 1177 Nostoc 0 genus 6626 10 1 2593658 no rank 0 5203 7 Nostoc sp. PCC 7120 103690 species 0 713 1 662 0 species 1 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1751286 Nostoc sp. NIES-3756 1 0 711 species 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 725 0 species 0 684 species 1 Nostoc sp. PCC 7107 317936 1 0 species 814 1869241 Nostoc sp. CENA543 species 0 894 1 28072 Nostoc sp. PCC 7524 272131 Nostoc punctiforme 1 0 648 species 1306274 Nostoc flagelliforme species 0 744 1 Anabaena 1163 4 0 genus 2250 1 4 2619674 0 no rank 1546 2 1 0 914 species Anabaena sp. WA102 1647413 0 632 species 1 Anabaena sp. 90 46234 1 700 0 species 1165 Anabaena cylindrica Trichormus 1 264688 970 0 genus 1 3 264691 Trichormus variabilis 1 0 518 species Trichormus azollae 1164 451 0 species 1 1 3 family 0 1607 Rivulariaceae 1185 7 2 1 0 genus 1600 Rivularia 373984 19 0 no rank 1581 1 2676603 Rivularia sp. PCC 7116 373994 1581 0 species 1 1 0 590 no rank 1219117 Nostocales cyanobacterium HT-58-2 1940762 1 590 0 species 467 0 order 3 1890505 Chroococcidiopsidaceae 1890528 4 0 family 467 1 3 0 463 genus 1 2 54298 1 Chroococcidiopsis species 0 462 1 Chroococcidiopsis thermalis 54299 class 0 1990 1 6 307596 26 Gloeobacteria Gloeobacterales 307595 21 0 1964 order 1 5 1 4 0 1943 family Gloeobacteraceae 11 1890422 1932 0 genus 3 1 2 33071 Gloeobacter 1052 0 species 1 Gloeobacter violaceus 33072 Gloeobacter kilaueensis 1416614 species 0 878 1 6 1 0 order 2818 Pleurocapsales 52604 35 Dermocarpellaceae 9 1890498 1 4 0 family 2204 3 1 genus 0 2195 15 102115 Stanieria 2642663 0 1055 no rank 1 species 0 1055 1 1807358 Stanieria sp. NIES-3757 1 species 0 1125 Stanieria cyanosphaera 102116 0 579 family 1 1890500 1 579 0 genus 44474 Pleurocapsa minor 54308 0 579 species 1 41 19657 0 subclass 1301283 order 0 13876 22 1 Chroococcales 1118 8 1 9 0 family 5199 1890450 3 Aphanothecaceae 1 0 914 genus 263510 2546360 1 0 914 species strain 0 914 1 43989 Cyanothece sp. ATCC 51142 2 0 1339 genus 2546365 0 1339 species 2 2546366 1 0 strain 660 Cyanothece sp. PCC 8802 395962 Cyanothece sp. PCC 8801 41431 1 0 679 strain 2 0 1726 genus 28070 1 0 624 species 2546359 Cyanothece sp. PCC 7822 497965 1 0 624 strain 1102 0 species 1 2546356 Cyanothece sp. PCC 7424 65393 0 strain 1102 1 92682 0 331 no rank 2 76023 1 Halothece 1 2 0 genus 331 2632878 0 no rank 330 1 1 330 0 species 65093 Halothece sp. PCC 7418 1453359 1 0 genus 886 886 0 species 1 Candidatus Atelocyanobacterium thalassa 713887 family 0 4426 1 6 Chroococcaceae 1890464 10 102231 0 genus 717 1 2623012 0 no rank 717 1 1173026 Gloeocapsa sp. PCC 7428 1 species 0 717 268175 1 genus 0 708 0 708 no rank 1 2648896 1 species 0 708 2005460 Chondrocystis sp. NIES-4102 2991 0 genus 3 1 669357 84 Geminocystis 2 2907 0 no rank 2625037 Geminocystis sp. NIES-3709 1617448 1 0 1136 species Geminocystis sp. NIES-3708 1615909 0 1771 species 1 1 2 0 1831 family Cyanobacteriaceae 10 1890452 102234 1 0 genus 1821 379064 Cyanobacterium aponinum 1821 0 species 1 0 family 2412 4 1 15 1890449 Microcystaceae 8 1125 Microcystis 1 3 genus 0 2397 2643300 1 715 0 no rank 1967666 Microcystis sp. MC19 1 0 species 715 1674 0 species 1 Microcystis aeruginosa 1126 19 1 0 order 5781 33 1150 Oscillatoriales 6 1892252 Microcoleaceae 0 family 1755 1 4 1205 1 0 1096 genus 0 species 1096 1 1206 Trichodesmium erythraeum Microcoleus 8 44471 2 1 genus 0 653 2642155 1 0 no rank 645 1 0 species 645 1173027 Microcoleus sp. PCC 7113 1 6 0 1785 family Oscillatoriaceae 1892254 1 8 1155738 Moorea 1 2 0 genus 713 1155739 Moorea producens 0 705 species 1 3 1 0 genus 1071 Oscillatoria 1158 1 118323 Oscillatoria acuminata 0 species 564 1 482564 Oscillatoria nigro-viridis 506 0 species 1 family 0 774 1 2 Gomontiellaceae 24 1892255 241421 genus 0 750 1 Crinalium epipsammum 241425 species 0 750 1 4 1892251 Coleofasciculaceae 1 3 0 856 family Geitlerinema 63132 5 2 1 852 0 genus 1 0 no rank 847 2648775 1173025 Geitlerinema sp. PCC 7407 species 0 847 1 0 family 578 3 1 10 1892249 Cyanothecaceae 0 568 genus 1 2 108 43988 Cyanothece 460 0 no rank 1 2649277 1 460 0 species 395961 Cyanothece sp. PCC 7425 544448 43 Tenericutes 101 1 phylum 0 147118 8462 0 no rank 2 713063 1 4024 0 species Tenericutes bacterium MO-XQ 1911684 0 4438 species 1 Tenericutes bacterium MZ-XQ 1911683 Mollicutes 96 31969 1 96 class 0 133569 Entomoplasmatales 53 186328 67805 0 order 1 39 40719 0 family 1 24 Spiroplasmataceae 55 2131 23 1 0 40664 genus Spiroplasma 2132 2015 1 0 2128 species Spiroplasma sabaudiense 216944 2144 Spiroplasma mirum 0 species 1703 1 1 2237 0 species 216937 Spiroplasma floricola Spiroplasma helicoides 216938 species 0 1138 1 1 species 0 1584 216933 Spiroplasma chrysopicola 0 species 1882 1 2136 Spiroplasma monobiae Spiroplasma apis 2137 728 0 species 1 1 species 0 3323 Spiroplasma eriocheiris 315358 1 0 2706 species 216935 Spiroplasma culicicola species 0 1268 1 47834 Spiroplasma kunkelii 1 species 0 1365 216946 Spiroplasma turonicum Spiroplasma diminutum 216936 1 species 0 1899 0 2108 no rank 2 2637901 Spiroplasma sp. TU-14 1898044 1054 0 species 1 1914410 Spiroplasma sp. NBRC 100390 1054 0 species 1 1 species 0 1675 2133 Spiroplasma citri 0 species 2556 1 2139 Spiroplasma clarkii 2145 Spiroplasma taiwanense 1 species 0 1458 1 species 0 3135 216945 Spiroplasma syrphidicola 216942 Spiroplasma litorale 1 0 1300 species Spiroplasma atrichopogonis 1114980 1 0 1858 species 1 species 0 966 Spiroplasma corruscae 216934 1 0 1632 species 362837 Spiroplasma cantharicola 33925 23 Entomoplasmataceae 0 family 27033 1 14 46238 29 Entomoplasma 6831 0 genus 5 1 0 species 1328 1 215578 Entomoplasma somnilux 0 species 1031 1 Entomoplasma freundtii 74700 0 species 2830 1 81459 Entomoplasma melaleucae 214888 Entomoplasma luminosum species 0 1613 1 Mesoplasma 276 46239 1 8 0 genus 20179 Mesoplasma syrphidae 225999 species 0 5157 1 Mesoplasma coleopterae 324078 0 1643 species 1 Mesoplasma lactucae 138853 1 0 species 5942 0 species 1439 1 216427 Mesoplasma chauliocola 0 1375 species 1 Mesoplasma tabanidae 219745 Mesoplasma entomophilum 2149 1 species 0 1673 1 0 2674 species 2151 Mesoplasma florum 0 21307 order 1 13 Acholeplasmatales 186329 27 12 1 family 0 21280 2146 47 Acholeplasmataceae 5667 0 genus 6 1 Candidatus Phytoplasma 450 33926 3 0 2984 species group 85620 0 1129 species 1 100379 Onion yellows phytoplasma 229545 Aster yellows witches'-broom phytoplasma 0 species 780 1 0 1075 species 1 202462 Maize bushy stunt phytoplasma 1 0 species group 1106 85632 Candidatus Phytoplasma australiense 59748 1 species 0 1106 1 1127 0 species group 85630 1 1127 0 species 37692 Candidatus Phytoplasma mali 0 15566 genus 1 5 412 2147 Acholeplasma Acholeplasma laidlawii 2148 0 3068 species 1 0 species 3701 1 38986 Acholeplasma palmae 5598 0 species 1 35623 Acholeplasma oculi 61635 Acholeplasma brassicae 0 species 2787 1 53 2085 Mycoplasmatales 43 1 44361 0 order 140 2092 Mycoplasmataceae 44308 0 family 1 42 2129 2 2297 0 genus 1 0 1279 species 2130 Ureaplasma urealyticum 134821 Ureaplasma parvum 0 species 1018 1 12 genus 0 14228 2767358 Mycoplasma arginini 2094 1 species 0 804 Mycoplasma bovis 28903 1 2226 0 species 0 695 species 1 Mycoplasma canis 29555 1 0 1335 species 2115 Mycoplasma fermentans 2109 Mycoplasma synoviae species 0 234 1 2112 Mycoplasma bovigenitalium 1 0 1153 species 1 0 species 596 48003 Mycoplasma pullorum 171284 Mycoplasma cynos 1 species 0 900 1 1751 0 species Mycoplasma agalactiae 2110 650 0 species 1 Mycoplasma pulmonis 2107 29553 Mycoplasma bovirhinis 1 0 514 species Mycoplasma californicum 2113 1 species 0 3370 2093 251 Mycoplasma 0 27643 genus 1 27 0 10719 species group 3 656088 Mycoplasma capricolum 2095 0 species 2596 1 1 0 species 5605 Mycoplasma mycoides 2102 2518 0 species 1 2105 Mycoplasma leachii 1 species 0 662 2118 Mycoplasma mobile 0 211 species 1 2097 Mycoplasma genitalium Mycoplasma arthritidis 2111 0 species 591 1 0 578 species 1 2096 Mycoplasma gallisepticum Mycoplasma parvum 984991 1 154 0 species Mycoplasma crocodyli 50052 1 714 0 species species 0 2245 1 Mycoplasma yeatsii 51365 1 0 species 642 Mycoplasma flocculare 2128 1 0 558 species Mycoplasma bovoculi 45362 1 625 0 species Mycoplasma canadense 29554 1 species 0 1295 2098 Mycoplasma hominis 1 0 3051 no rank 2683645 1 species 0 3051 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 29501 Mycoplasma haemofelis 1 species 0 83 1 0 60 species Mycoplasma pneumoniae 2104 0 species 1494 1 2123 Mycoplasma putrefaciens Mycoplasma suis 57372 0 197 species 1 Mycoplasma ovis 171632 1 species 0 143 1 610 0 species 2100 Mycoplasma hyorhinis 28227 Mycoplasma penetrans species 0 1586 1 1 species 0 46 65123 Mycoplasma wenyonii Mycoplasma hyopneumoniae 2099 species 0 692 1 79 0 species 1 Mycoplasma haemocanis 136241 species 0 357 1 Mycoplasma dispar 86660 2799557 2 no rank 0 5044 5044 0 genus 2 1 1912503 1 Candidatus Izimaplasma 0 no rank 5043 1 2624196 0 species 5043 1 1541959 Candidatus Izimaplasma sp. HR1 67819 0 560 phylum 5 5 1 0 class 560 Fimbriimonadia 1663419 8 order 0 552 1 4 1663425 8 Fimbriimonadales family 0 544 1 3 Fimbriimonadaceae 4 1663426 1005038 4 Fimbriimonas 0 540 genus 1 2 536 0 species 1 1005039 Fimbriimonas ginsengisoli 14911654 0 phylum 723 1 Firmicutes 362 1239 0 class 1590 1 5 Limnochordia 1676648 7 1676649 57 Limnochordales 1 4 0 1583 order 3 1 family 0 1526 Limnochordaceae 8 1676650 1 2 0 1518 genus 1676651 22 Limnochorda Limnochorda pilosa 1555112 0 1496 species 1 10252330 0 class 222 1 Clostridia 516 186801 186802 23829 Clostridiales 0 10169532 order 166 1 Clostridiaceae 31979 825 0 family 325067 1 41 Alkaliphilus 114627 7 1 3 0 genus 4824 208226 Alkaliphilus metalliredigens 0 2792 species 1 461876 Alkaliphilus oremlandii 0 species 2025 1 1485 2606 Clostridium 0 genus 307217 1 30 0 6883 species 1 Clostridium scatologenes 1548 1497 Clostridium formicaceticum 1 species 0 3384 Clostridium acetobutylicum 1488 5685 0 species 1 2614128 2 0 45076 no rank 39089 0 species 1 1042156 Clostridium sp. SY8519 755731 Clostridium sp. BNL1100 0 species 5987 1 1534 Clostridium kluyveri 17839 0 species 1 1 0 7179 species Clostridium taeniosporum 394958 1502 Clostridium perfringens 1 0 19345 species 46867 Clostridium chauvoei 1 7175 0 species Clostridium butyricum 1492 0 14953 species 1 1 0 4948 species 1538 Clostridium ljungdahlii 1 species 0 9446 Clostridium pasteurianum 1501 1216932 Clostridium bornimense 1 6702 0 species 1493 Clostridium cellulovorans 0 7872 species 1 1519 Clostridium tyrobutyricum 1 3687 0 species Clostridium carboxidivorans 217159 species 0 7479 1 1 5473 0 species 238834 Clostridium estertheticum Clostridium sporogenes 1509 4419 0 species 1 1 0 4932 species Clostridium novyi 1542 1561 Clostridium baratii 0 11776 species 1 species 0 7763 1 1513 Clostridium tetani Clostridium aceticum 84022 0 species 3151 1 Clostridium argentinense 29341 1 7037 0 species 11171 0 species 1 169679 Clostridium saccharobutylicum 1491 Clostridium botulinum 0 38181 species 1 1520 Clostridium beijerinckii 1 0 species 15168 1 0 13977 species Clostridium saccharoperbutylacetonicum 36745 1 species 0 8823 1494 Clostridium cochlearium species 0 5087 1 Clostridium autoethanogenum 84023 6255 0 genus 1 4 Candidatus Arthromitus 49 49082 3 0 no rank 6206 2638829 species 0 2376 1 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 1903 0 species 1 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 49118 Candidatus Arthromitus sp. SFB-mouse 1 1927 0 species Geosporobacter 390805 55 1 2 0 4951 genus Geosporobacter ferrireducens 1424294 1 0 species 4896 Mordavella 1981033 995 0 genus 1 0 family 6091441 1 27 Lachnospiraceae 186803 3573 genus 0 567949 2 1 Roseburia 71 841 Roseburia hominis 301301 0 567878 species 1 2719231 0 48190 genus 1 1 0 species 48190 84030 [Clostridium] saccharolyticum 2569097 genus 0 341252 1 1 0 341252 species [Eubacterium] hallii 39488 Butyrivibrio 49 830 1 3 0 genus 47283 0 species 23695 1 43305 Butyrivibrio proteoclasticus 1 23539 0 species 185008 Butyrivibrio hungatei Lachnoclostridium 945 1506553 0 genus 213007 1 4 0 species 23288 1 66219 Lachnoclostridium phytofermentans 2608895 1 0 82752 no rank 0 82752 species 1 Lachnoclostridium sp. YL32 1834196 106022 0 species 1 Lachnoclostridium phocaeense 1871021 2 1 989728 0 genus Anaerostipes 207244 175 649756 Anaerostipes hadrus 1 989553 0 species 16 2039240 Anaerotignum 1 2 5747 0 genus 1 0 species 5731 28446 Anaerotignum propionicum 1 0 genus 1209676 28050 [Eubacterium] eligens 39485 1 0 1209676 species 250981 0 genus 1 3 295 572511 Blautia Blautia hansenii 1322 0 158782 species 1 2648079 0 91904 no rank 1 1 91904 0 species Blautia sp. YL58 1796616 0 genus 341395 1 2719313 208479 [Clostridium] bolteae 341395 0 species 1 2 698776 Cellulosilyticum 1 2 0 genus 13396 29360 Cellulosilyticum lentocellum 1 13394 0 species 1663717 1 Herbinix 1 2 14907 0 genus 1679721 Herbinix luporum 1 14906 0 species 2 0 no rank 2044357 186928 39491 [Eubacterium] rectale 0 species 2013899 1 712991 Lachnospiraceae bacterium oral taxon 500 0 species 30458 1 31984 62 Heliobacteriaceae 0 3994 family 1 3 Heliobacterium 52 2697 genus 0 3932 1 2 Heliobacterium modesticaldum 35701 1 3880 0 species 2304686 12 58044 0 family genus 0 4503 1 2304691 1 0 4503 species 1510 [Clostridium] stercorarium 0 no rank 21630 1 2305130 0 species 21630 1 1834198 Ruminiclostridium sp. KB18 Fastidiosipila 50 236752 genus 0 2728 2 1 236753 Fastidiosipila sanguinis 0 species 2678 1 3 0 genus 12570 2304692 1 4335 0 species Ruminiclostridium thermocellum 1515 288965 [Clostridium] clariflavum 1 0 5027 species 3208 0 species 1 1677857 Herbivorax saccincola 3 1637257 Mageeibacillus 1 2 5904 0 genus 884684 Mageeibacillus indolicus 1 species 0 5901 1508657 323 Ruminiclostridium 1 2 0 genus 7636 [Clostridium] cellulolyticum 1521 1 0 species 7313 0 genus 3073 1 2304693 [Clostridium] thermosuccinogenes 84032 1 species 0 3073 193493 0 no rank 10 538999 27 543314 Clostridiales Family XIII. Incertae Sedis family 0 12876 4 1 0 5468 genus 1 2 Mogibacterium 43 86331 0 species 5425 1 114527 Mogibacterium diversum 143393 [Eubacterium] sulci 1 species 0 7381 1 2 0 58682 genus Intestinimonas 661 1392389 species 0 58021 1 1297617 Intestinimonas butyriciproducens 539000 13 Clostridiales Family XVII. Incertae Sedis 1 3 2393 0 family 73918 21 Thermaerobacter genus 0 2380 1 2 0 2359 species 1 Thermaerobacter marianensis 73919 119542 0 genus 1 2717089 119542 0 species 1 2086584 Mordavella sp. Marseille-P3756 Syntrophomonadaceae 68298 2 0 1290 family 5 1 Syntrophothermus 2 129001 477 0 genus 1 2 0 species 475 1 86170 Syntrophothermus lipocalidus 811 0 genus 2 1 Syntrophomonas 7 862 0 species 804 1 Syntrophomonas wolfei 863 Eubacteriaceae 17 186806 1 5 0 family 31139 Acetobacterium 33951 2 0 genus 3364 2 1 33952 Acetobacterium woodii 0 3362 species 1 Eubacterium 1593 1730 0 genus 27758 2 1 Eubacterium limosum 1736 1 species 0 26165 54 990719 Christensenellaceae 0 family 29292 3 1 563 990721 Christensenella 2 1 0 29238 genus 0 28675 species 1 Christensenella massiliensis 1805714 275294 0 family 12 1 Peptostreptococcaceae 622 186804 genus 0 9367 1 2 Paeniclostridium 1849828 2 1 0 9365 species Paeniclostridium sordellii 1505 Clostridioides 344 1870884 253638 0 genus 1 2 Clostridioides difficile 1496 1 253294 0 species 0 2883 genus 2 1 9 186831 Acetoanaerobium 1 species 0 2874 Acetoanaerobium sticklandii 1511 1894 0 no rank 1 1411023 Peptostreptococcaceae bacterium oral taxon 929 2081703 1 0 species 1894 3193 0 genus 2 1 Filifactor 8 44259 0 3185 species 1 143361 Filifactor alocis 9 1481960 Peptoclostridium 0 3697 genus 1 2 0 species 3688 1 1731 Peptoclostridium acidaminophilum Oscillospiraceae 2 216572 family 0 21437 3 1 Oscillibacter 62 459786 1 2 21435 0 genus 21373 0 species 1 Oscillibacter valericigenes 351091 541000 818 Ruminococcaceae 1 13 0 family 3074294 genus 0 2930456 1 2 216851 1857 Faecalibacterium 0 2928599 species 1 853 Faecalibacterium prausnitzii 1 3563 0 no rank 552397 [Clostridium] cellulosi 29343 species 0 3563 1 2305133 0 no rank 9125 1 Ruminococcaceae bacterium CPB6 1572656 0 species 9125 1 2 1 0 genus 11765 46 253238 Ethanoligenens 1 11719 0 species 253239 Ethanoligenens harbinense 1 2 0 genus 87800 Flavonifractor 82 946234 Flavonifractor plautii 292800 species 0 87718 1 Ruminococcus 1263 85 0 genus 30763 3 1 1 0 species 20368 1160721 Ruminococcus bicirculans 1264 Ruminococcus albus 1 species 0 10310 Herbivorax 1890281 1 genus 0 4 0 37065 family 1 28 141 186807 Peptococcaceae 2282740 0 2150 genus 1 102134 Desulfotomaculum gibsoniae 2150 0 species 1 1 4 4999 0 genus Desulfosporosinus 55 79206 Desulfosporosinus acidiphilus 885581 1 species 0 1439 1871 0 species 1 1563 Desulfosporosinus orientis Desulfosporosinus meridiei 79209 1 0 1634 species genus 0 3620 1 2 Dehalobacterium 3 51514 3617 0 species 1 Dehalobacterium formicoaceticum 51515 51196 1 Syntrophobotulus 2 1 1989 0 genus 51197 Syntrophobotulus glycolicus 1 0 species 1988 Dehalobacter 59 56112 1 4 genus 0 5788 species 0 1832 1 Dehalobacter restrictus 55583 2635733 0 3897 no rank 2 1147129 Dehalobacter sp. DCA 1 1736 0 species Dehalobacter sp. CF 1131462 1 2161 0 species genus 0 7345 5 1 Desulfitobacterium 36853 42 1 0 1548 species 36854 Desulfitobacterium dehalogenans 233055 Desulfitobacterium dichloroeliminans 1 1664 0 species 142877 Desulfitobacterium metallireducens 1 0 1305 species 0 2786 species 1 49338 Desulfitobacterium hafniense Candidatus Desulforudis 471826 14 1 2 1391 0 genus 1 species 0 1377 Candidatus Desulforudis audaxviator 471827 1 0 genus 1038 278993 863643 Thermincola potens 1 1038 0 species 5 1 0 7109 genus 1562 106 Desulfotomaculum 59610 Desulfotomaculum reducens 0 species 1509 1 1 species 0 2600 Desulfotomaculum ruminis 1564 1833852 Desulfotomaculum ferrireducens 1 1604 0 species 1565 Desulfotomaculum nigrificans 0 species 1290 1 2282742 1 0 genus 1495 58138 Desulfotomaculum acetoxidans 0 species 1495 1 5 543349 Symbiobacteriaceae 1 3 family 0 3853 2733 34 Symbiobacterium 1 2 3848 0 genus Symbiobacterium thermophilum 2734 0 3814 species 1 37 1 0 order 56848 Thermoanaerobacterales 85 68295 543371 89 Thermoanaerobacterales Family III. Incertae Sedis 13 1 family 0 21721 44000 822 Caldicellulosiruptor 1 9 0 genus 15671 1 0 1442 species Caldicellulosiruptor hydrothermalis 413888 0 species 3054 1 52766 Caldicellulosiruptor lactoaceticus Caldicellulosiruptor obsidiansis 717609 species 0 1587 1 Caldicellulosiruptor saccharolyticus 44001 1 0 1598 species 1 1513 0 species 413889 Caldicellulosiruptor kronotskyensis 0 1394 species 1 55205 Caldicellulosiruptor owensensis Caldicellulosiruptor bescii 31899 0 species 1546 1 1 0 species 2715 Caldicellulosiruptor kristjanssonii 52765 0 genus 5961 1 3 Thermoanaerobacterium 28895 14 Thermoanaerobacterium thermosaccharolyticum 1517 3716 0 species 1 Thermoanaerobacterium xylanolyticum 29329 1 species 0 2231 0 715 family 1 227387 227388 1 715 0 genus 0 species 715 1 Thermodesulfobium narugense 184064 14 543372 Thermoanaerobacterales Family IV. Incertae Sedis 5335 0 family 1 3 Mahella 7 252965 1 2 0 5321 genus Mahella australiensis 252966 1 species 0 5314 0 28992 family 1 19 186814 42 Thermoanaerobacteraceae 1065 0 genus 1 2 14 140458 Thermacetogenium 1 0 1051 species Thermacetogenium phaeum 85874 2 1 0 2019 genus 5 249529 Caldanaerobacter species 0 2014 1 Caldanaerobacter subterraneus 911092 129957 1275 0 genus 1 Carboxydothermus hydrogenoformans 129958 species 0 1275 1 4 2067 0 no rank 42857 42837 3 Ammonifex 2 1 0 1005 genus 42838 Ammonifex degensii species 0 1002 1 1 2 0 1062 genus Moorella 44260 4 Moorella thermoacetica 1525 1 0 1058 species 22524 0 genus 9 1 Thermoanaerobacter 545 1754 1 species 0 1358 Thermoanaerobacter mathranii 583357 2 0 6675 no rank 2636821 1 0 3306 species Thermoanaerobacter sp. X513 573062 Thermoanaerobacter sp. X514 399726 3369 0 species 1 0 3485 species 1 496866 Thermoanaerobacter pseudethanolicus 2325 Thermoanaerobacter kivui species 0 2375 1 46354 Thermoanaerobacter wiegelii 0 species 2009 1 Thermoanaerobacter italicus 108150 1 2592 0 species 29323 Thermoanaerobacter brockii 0 species 3485 1 3 1746 0 order 485256 5 485255 Natranaerobiaceae 1 3 family 0 1746 32 375928 Natranaerobius 1 2 genus 0 1741 1 1709 0 species 375929 Natranaerobius thermophilus 11 1 0 order 21031 7 53433 Halanaerobiales family 0 5924 6 1 18 972 Halanaerobiaceae 22 2330 Halanaerobium 1 3 genus 0 4680 2331 Halanaerobium praevalens 1 3072 0 species 656519 Halanaerobium hydrogeniformans 1 0 1586 species 1226 0 genus 2 1 Halothermothrix 2 32636 species 0 1224 1 31909 Halothermothrix orenii 0 15100 family 1 4 Halobacteroidaceae 11 53434 28186 1 genus 0 1680 1 0 1680 species Acetohalobium arabaticum 28187 0 13409 genus 2 1 Halobacteroides 42417 615 42422 Halobacteroides halobius 0 species 12794 1 4 0 order 2657 2770089 2770092 1784 0 family 2 499228 3 Tepidanaerobacter 2 1 genus 0 1784 499229 Tepidanaerobacter acetatoxydans 1 0 1781 species 2770093 0 family 873 2 873 0 genus 1 2 5 291988 Thermosediminibacter 1 0 species 868 291990 Thermosediminibacter oceani 526524 3 Erysipelotrichia 1 11 156927 0 class 1 10 0 order 156924 102 526525 Erysipelotrichales 9 1 0 156822 family Erysipelotrichaceae 128827 404 Turicibacter 191303 50 1 2 41816 0 genus 2638206 0 no rank 41766 1 1712675 Turicibacter sp. H121 0 41766 species 1 no rank 0 86339 1 544447 1834207 Erysipelotrichaceae bacterium I46 1 86339 0 species 703 1647 Erysipelothrix 0 18104 genus 1 3 1648 Erysipelothrix rhusiopathiae 1 0 10158 species 0 7243 species 1 Erysipelothrix larvae 1514105 0 10159 genus 1 2 37 1729679 Faecalibaculum Faecalibaculum rodentium 1702221 0 10122 species 1 84086 1 0 2666 no rank 0 2666 species 1 243899 endosymbiont 'TC1' of Trimyema compressum 2 0 1443 no rank 33974 Ndongobacter 29 1930845 genus 0 1443 1 2 Ndongobacter massiliensis 1871025 1 0 1414 species 91061 520 Bacilli 0 3640481 class 432 1 order 0 541879 1 266 Bacillales 984 1385 965 186817 Bacillaceae 119 1 0 242759 family 2675229 0 4838 genus 2 1478 Bacillus simplex 0 3497 species 1 264697 Bacillus muralis species 0 1341 1 1055323 0 genus 1226 1 Aeribacillus pallidus 33936 1 0 species 1226 1 3 3147 0 genus 3 45667 Halobacillus 1 species 0 1529 402384 Halobacillus mangrovi 1570 Halobacillus halophilus 1 1615 0 species 2 0 genus 4840 2675230 Bacillus kochii 859143 0 species 2723 1 2117 0 species 1 665099 Bacillus oceanisediminis 0 genus 1115 1 351195 1 1115 0 species Salimicrobium jeotgali 1230341 29 175304 Lentibacillus 1679 0 genus 1 2 1472767 Lentibacillus amyloliquefaciens 0 species 1650 1 31 150247 Anoxybacillus 1 6 genus 0 7288 198467 Anoxybacillus gonensis 1359 0 species 1 33934 Anoxybacillus flavithermus 0 species 2328 1 1 species 0 1247 Anoxybacillus amylolyticus 294699 0 2323 no rank 2 2639704 1 species 0 1228 1490052 Anoxybacillus sp. B2M1 1095 0 species 1 Anoxybacillus sp. B7M1 1490057 2675234 0 genus 11384 5 1 2698 0 species Bacillus clausii 79880 1 0 2548 species 199441 Bacillus krulwichiae 86665 Bacillus halodurans 0 species 2688 1 1 species 0 1803 Bacillus lehensis 300825 0 1647 species 1 79885 Bacillus pseudofirmus Lysinibacillus 178 400634 0 13128 genus 5 1 2636778 1 no rank 0 1989 1 0 1989 species 2072025 Lysinibacillus sp. YS11 Lysinibacillus fusiformis 28031 1 2323 0 species Lysinibacillus varians 1145276 0 species 2281 1 1 species 0 6357 Lysinibacillus sphaericus 1421 Virgibacillus 84406 44 7 1 0 12300 genus Virgibacillus necropolis 163877 2147 0 species 1 1 species 0 1767 Virgibacillus phasianinus 2017483 1482 Virgibacillus halodenitrificans 1 1938 0 species 1 0 2285 species Virgibacillus pantothenticus 1473 2620237 2 no rank 0 4119 Virgibacillus sp. SK37 403957 0 1724 species 1 Virgibacillus sp. 6R 1911587 0 2395 species 1 2 1 4312 0 genus 182709 1 Oceanobacillus 1 0 species 4311 182710 Oceanobacillus iheyensis 58 1 0 genus 154980 7663 1386 Bacillus 79881 Bacillus gibsonii species 0 128 1 1792192 0 1809 species group 1 293387 Bacillus altitudinis 0 1809 species 1 79883 Bacillus horikoshii 0 1858 species 1 1 1638 0 species 1664069 Bacillus glycinifermentans 1 0 species 7404 1408 Bacillus pumilus 86664 Bacillus flexus 0 1631 species 1 1 species 0 1401 1479 Bacillus smithii 1413 Bacillus cellulosilyticus 1 1568 0 species 0 2633 species 1 Bacillus cohnii 33932 3018 0 species 1 Bacillus safensis 561879 1 1932 0 species Bacillus aryabhattai 412384 0 species 2344 1 1547283 Bacillus weihaiensis 0 no rank 17482 19 185979 1774743 Bacillus sp. SDLI1 1 species 0 784 1 0 species 517 Bacillus sp. JS 1127744 1 0 953 species 1837130 Bacillus sp. FJAT-14266 species 0 826 1 Bacillus sp. 275 1941347 Bacillus sp. WP8 756828 1 species 0 1106 1 0 1596 species 98228 Bacillus sp. OxB-1 species 0 524 1 1446792 Bacillus sp. Pc3 2009331 Bacillus sp. MD-5 1 645 0 species 1570330 Bacillus sp. BH072 1 0 species 253 0 species 2428 1 Bacillus sp. X1(2014) 1565991 Bacillus sp. 1NLA3E 666686 species 0 1924 1 Bacillus sp. 1s-1 2026248 1 species 0 1099 1 0 species 1100 Bacillus sp. H15-1 1856406 1 470 0 species 563169 Bacillus sp. SJ-10 1628753 Bacillus sp. LM 4-2 1 species 0 309 1827146 Bacillus sp. IHB B 7164 1 species 0 1908 0 species 228 1 Bacillus sp. Lzh-5 2049935 1 0 504 species 1574141 Bacillus sp. YP1 1 308 0 species 1409 Bacillus sp. (in: Bacteria) 1 species 0 1906 324767 Bacillus infantis 4819 0 species 1 1404 Bacillus megaterium 653685 21295 0 species group 9 0 species 457 1 72361 Bacillus vallismortis 0 species 1856 1 119858 Bacillus sonorensis 1402 Bacillus licheniformis 1 0 species 1667 species subgroup 0 6447 3 1938374 0 750 species 1 659243 Bacillus siamensis Bacillus amyloliquefaciens 1390 1 2863 0 species 492670 Bacillus velezensis 0 2834 species 1 1 species 0 7701 Bacillus subtilis 1423 Bacillus atrophaeus 1452 1 1639 0 species 1 1528 0 species 1648923 Bacillus paralicheniformis 135735 Bacillus endophyticus species 0 3445 1 0 3861 species 1 1398 Bacillus coagulans 1 0 species 1606 1471 Bacillus methanolicus 1 species 0 1116 Bacillus beveridgei 632773 1178537 Bacillus xiamenensis 1 species 0 1615 86661 10 62808 0 species group 9464 0 no rank 3 2750818 1 4382 0 species Bacillus sp. ABP14 1892404 2078 0 species 1 2053832 Bacillus sp. HBCD-sjtu species 0 3004 1 1839798 Bacillus sp. FDAARGOS_235 Bacillus bombysepticus 658666 2162 0 species 1 1 0 species 2016 Bacillus toyonensis 155322 1 0 species 17996 Bacillus thuringiensis 1428 Bacillus mycoides 1405 1 species 0 8033 1 1730 0 species 1392 Bacillus anthracis Bacillus cereus 1396 0 species 19023 1 1 2384 0 species 580165 Bacillus cytotoxicus 0 3935 genus 3 1 Fictibacillus 11 1329200 1673 0 species 1 1221500 Fictibacillus phosphorivorans species 0 2251 1 Fictibacillus arsenicus 255247 1 2 0 3230 genus 29331 1 Amphibacillus Amphibacillus xylanus 1449 1 3229 0 species Parageobacillus 1906945 14 1 2 1644 0 genus 0 species 1630 1 1426 Parageobacillus thermoglucosidasius genus 0 1545 1 2 1 459532 Terribacillus Terribacillus aidingensis 586416 0 1544 species 1 15 1 0 genus 11203 Geobacillus 129337 576 2642459 6 0 4040 no rank 471223 Geobacillus sp. WCH70 1 0 species 870 1233873 Geobacillus sp. GHH01 1 species 0 362 Geobacillus sp. Y412MC52 550542 383 0 species 1 1 414 0 species Geobacillus sp. C56-T3 691437 1 0 species 350 Geobacillus sp. Y412MC61 544556 0 1661 species 1 581103 Geobacillus sp. Y4.1MC1 1 0 species 1006 1422 Geobacillus stearothermophilus species 0 795 1 Geobacillus genomosp. 3 1921421 1505648 species group 0 3082 4 1462 Geobacillus kaustophilus 0 species 280 1 0 669 species 1 Geobacillus thermocatenulatus 33938 1 0 831 species Geobacillus lituanicus 169283 1 0 1302 species Geobacillus thermoleovorans 33941 0 species 986 1 Geobacillus thermodenitrificans 33940 1 species 0 718 Geobacillus subterraneus 129338 539002 10613 0 no rank 9 2 no rank 0 5384 539738 Gemella 1 1378 2 1 0 genus 5384 2624949 0 5383 no rank 1 Gemella sp. oral taxon 928 1785995 1 0 5383 species 539742 7 no rank 0 5229 7 1 0 5229 genus Exiguobacterium 33986 152 Exiguobacterium antarcticum 132920 0 806 species 1 3356 0 no rank 4 2644629 0 species 699 1 1399115 Exiguobacterium sp. MH3 1 789 0 species 1224749 Exiguobacterium sp. ZWU0009 species 0 814 1 1849031 Exiguobacterium sp. U13-1 species 0 1054 1 360911 Exiguobacterium sp. AT1b 332410 Exiguobacterium sibiricum 1 0 915 species 3485 0 family 4 1 Thermoactinomycetaceae 186824 8 Novibacillus 130 1677050 0 genus 3453 1 2 Novibacillus thermophilus 1471761 1 3323 0 species 0 genus 24 1 Laceyella 292635 1 46 108890 0 family 344 186822 Paenibacillaceae 3536 0 no rank 3 85151 Aneurinibacillus 30 55079 0 genus 3536 1 3 1 0 1813 species Aneurinibacillus soli 1500254 0 1693 no rank 1 2642329 1450761 Aneurinibacillus sp. XH2 1 1693 0 species Paenibacillus 44249 925 0 95102 genus 1 36 1 0 2321 species Paenibacillus yonginensis 1462996 189426 Paenibacillus odorifer 1 0 2508 species Paenibacillus stellifer 169760 species 0 2840 1 Paenibacillus bovis 1616788 0 species 2802 1 2044880 2876 0 species group 1 0 2876 species 1 Paenibacillus riograndensis 483937 Paenibacillus naphthalenovorans 162209 1 0 2918 species 1 0 3228 species Paenibacillus donghaensis 414771 1939 0 species 1 Paenibacillus terrae 159743 Paenibacillus xylanexedens 528191 species 0 4171 1 Paenibacillus swuensis 1178515 species 0 1368 1 1579 0 species 1 172713 Paenibacillus kribbensis 1 1545 0 species 59893 Paenibacillus peoriae 1 0 2618 species 1870820 Paenibacillus ihbetae Paenibacillus crassostreae 1763538 1 species 0 1977 Paenibacillus graminis 189425 species 0 2546 1 160799 Paenibacillus borealis 1 species 0 3435 species 0 2041 1 1464 Paenibacillus larvae 4553 0 species 1 Paenibacillus mucilaginosus 61624 1406 Paenibacillus polymyxa 0 species 5810 1 44251 Paenibacillus durus 1 species 0 3579 185978 13 33107 0 no rank 1 0 3487 species Paenibacillus sp. FSL P4-0081 1536769 1 0 3295 species 1536774 Paenibacillus sp. FSL H7-0357 Paenibacillus sp. Y412MC10 481743 0 species 2162 1 1536772 Paenibacillus sp. FSL R7-0273 1 species 0 3570 1870819 Paenibacillus sp. BIHB4019 0 1769 species 1 324057 Paenibacillus sp. JDR-2 0 species 2093 1 0 1989 species 1 Paenibacillus sp. IHBB 10380 1566358 1536771 Paenibacillus sp. FSL R5-0912 1 species 0 3514 1 0 2180 species 1536775 Paenibacillus sp. FSL H7-0737 1 0 species 3510 Paenibacillus sp. FSL R7-0331 1536773 Paenibacillus sp. FSL R5-0345 1536770 1 0 1915 species 1784 0 species 1 Paenibacillus sp. lzh-N1 2069255 1 species 0 1839 Paenibacillus sp. 32O-W 1695218 Paenibacillus beijingensis 1126833 1983 0 species 1 Paenibacillus sabinae 365617 1 0 species 2433 Thermobacillus 76632 19 1 2 genus 0 2406 Thermobacillus composti 377615 species 0 2387 1 1 4 0 genus 7502 Brevibacillus 55080 47 1 species 0 1251 Brevibacillus formosus 54913 1465 Brevibacillus laterosporus species 0 4038 1 1393 Brevibacillus brevis 0 species 2166 1 Listeriaceae 186820 56 0 family 23257 1 9 Brochothrix 2755 18 2 1 genus 0 2719 2701 0 species 1 Brochothrix thermosphacta 2756 20482 0 genus 6 1 1637 112 Listeria 1 0 2293 species 1640 Listeria seeligeri 0 species 4178 1 Listeria ivanovii 1638 Listeria innocua 1642 1 0 species 1974 0 8102 species 1 Listeria monocytogenes 1639 1 species 0 3823 Listeria welshimeri 1643 38 186823 Alicyclobacillaceae 0 family 6870 9 1 1 2 genus 0 1917 49 29330 Alicyclobacillus 1 species 0 1868 405212 Alicyclobacillus acidocaldarius 3 1 genus 0 3542 38 432330 Tumebacillus 1214604 Tumebacillus algifaecis 1 0 1581 species 0 1923 species 1 Tumebacillus avium 1903704 0 1373 genus 1 3 Kyrpidia 16 1129704 1 0 species 818 Kyrpidia tusciae 33943 0 539 species 1 2055160 Kyrpidia sp. EA-1 3781 90964 Staphylococcaceae 108298 0 family 1 41 Staphylococcus 1279 1979 33 1 0 genus 92463 1288 Staphylococcus xylosus 0 species 3225 1 species 0 2568 1 Staphylococcus schleiferi 1295 Staphylococcus simiae 308354 3730 0 species 1 1 0 species 4833 Staphylococcus epidermidis 1282 0 species 1327 1 Staphylococcus pettenkoferi 170573 1 1292 0 species 70258 Staphylococcus piscifermentans Staphylococcus nepalensis 214473 0 3008 species 1 1 no rank 0 2555 91994 1 0 2555 species Staphylococcus sp. AntiMn-1 1715860 Staphylococcus succinus 61015 1 species 0 2663 1 1780 0 species Staphylococcus agnetis 985762 1 0 2963 species Staphylococcus haemolyticus 1283 0 1354 species 1 Staphylococcus hyicus 1284 Staphylococcus stepanovicii 643214 1 2351 0 species 1286 Staphylococcus simulans 1 species 0 1979 1 2333 0 species Staphylococcus lugdunensis 28035 Staphylococcus capitis 29388 1 0 species 1747 Staphylococcus saprophyticus 29385 1 0 3043 species Staphylococcus argenteus 985002 species 0 2977 1 29384 Staphylococcus kloosii 2330 0 species 1 1 2354 0 species 46127 Staphylococcus felis Staphylococcus warneri 1292 3005 0 species 1 29382 Staphylococcus cohnii 2915 0 species 1 1294 Staphylococcus muscae 1 0 species 1258 1569 0 species 1 155085 Staphylococcus lutrae 1 species 0 8480 1280 Staphylococcus aureus 70255 Staphylococcus condimenti 1 0 2297 species 1 0 species 3787 Staphylococcus hominis 1290 Staphylococcus pseudintermedius 283734 1 0 2586 species species 0 6217 1 Staphylococcus pasteuri 45972 2300 0 species 1 Staphylococcus equorum 246432 1 0 species 3720 Staphylococcus sciuri 1296 1 species 0 1938 1281 Staphylococcus carnosus Macrococcus 45 69965 7843 0 genus 4 1 Macrococcus canis 1855823 0 species 2305 1 2619255 0 2264 no rank 1 0 2264 species 1 Macrococcus sp. IME1552 1898474 Macrococcus caseolyticus 69966 1 0 3229 species Salinicoccus 45669 42 2 1 0 genus 2015 Salinicoccus halodurans 407035 0 1973 species 1 1 0 2196 genus 2005363 species 0 2196 1 1849491 Auricoccus indicus Planococcaceae 186818 145 1 26 0 family 35017 0 genus 4749 1 3 Solibacillus 648800 24 2637870 1 2087 0 no rank 1 0 species 2087 2048654 Solibacillus sp. R5-41 2638 0 species 1 Solibacillus silvestris 76853 286 1372 Planococcus 12 1 0 15043 genus 1227 0 species 1 1302659 Planococcus sp. L10.15 Planococcus antarcticus 161360 1 0 1120 species 1277 0 species 1 Planococcus halocryophilus 1215089 0 species 1491 1 1598147 Planococcus faecalis 1038856 Planococcus plakortidis 724 0 species 1 1 0 1305 species Planococcus rifietoensis 200991 192421 Planococcus maritimus 0 2525 species 1 Planococcus donghaensis 414778 1 0 1473 species 2662419 no rank 0 2065 2 Planococcus sp. MB-3u-03 2058136 1 910 0 species 1526927 Planococcus sp. PAMC 21323 0 species 1155 1 1 0 1550 species 1374 Planococcus kocurii 0 genus 8364 1 5 Sporosarcina 1569 83 2647733 2 0 2877 no rank 1368 0 species 1 1930764 Sporosarcina sp. P33 Sporosarcina sp. P37 1930546 1 1509 0 species 1 4197 0 species 1571 Sporosarcina ureae 1 0 1207 species Sporosarcina psychrophila 1476 1 2 genus 0 2085 157226 42 Jeotgalibacillus 2043 0 species 1 1508404 Jeotgalibacillus malaysiensis 648802 0 1819 genus 1 0 species 1819 1 Rummeliibacillus stabekisii 241244 2812 0 genus 1 2 1649 5 Kurthia 2644826 1 2807 0 no rank 1750719 Kurthia sp. 11kri321 1 2807 0 species 1 2 0 1706 family Sporolactobacillaceae 6 186821 663587 1700 0 no rank 1 1 0 species 1700 85683 [Bacillus] selenitireducens Lactobacillales 6089 186826 1 165 0 order 3098082 1 0 2126 no rank 263855 1993866 Lactobacillales bacterium 1 0 2126 species 33958 639 Lactobacillaceae 0 111539 family 58 1 2767885 0 4503 genus 2 0 species 1919 1 28038 Lactobacillus curvatus 1599 Lactobacillus sakei 1 0 2584 species 2767890 1 0 genus 1052 1 species 0 1052 1193095 Lactobacillus hokkaidonensis 0 12567 genus 6 2767879 Lactobacillus heilongjiangensis 1074467 0 1824 species 1 1602 Lactobacillus alimentarius species 0 2192 1 1847728 Lactobacillus allii 1 1985 0 species species 0 2209 1 Lactobacillus farciminis 1612 1988 0 species 1 392416 Lactobacillus crustorum species 0 2369 1 Lactobacillus ginsenosidimutans 1007676 4137 0 genus 3 2767842 1590 Lactobacillus plantarum 1 species 0 2147 60520 Lactobacillus paraplantarum 1 0 species 872 1 0 species 1118 1589 Lactobacillus pentosus 2759736 6557 0 genus 3 Lactobacillus casei 1582 1 0 2794 species Lactobacillus paracasei 1597 1 0 species 2388 47715 Lactobacillus rhamnosus species 0 1375 1 2767893 2734 0 genus 3 0 680 species 1 152331 Lactobacillus parabuchneri species 0 1368 1 Lactobacillus curieae 1138822 0 686 species 1 Lactobacillus buchneri 1581 0 2630 genus 2 2767881 Lactobacillus sanfranciscensis 1625 1 913 0 species 1 species 0 1717 53444 Lactobacillus lindneri 2767886 1990 0 genus 3 662 0 species 1 267363 Lactobacillus zymae 1580 Lactobacillus brevis 921 0 species 1 637971 Lactobacillus koreensis 1 0 species 407 2767876 1 0 3827 genus species 0 3827 1 1603 Lactobacillus amylophilus 35845 0 genus 16 1 4010 1578 Lactobacillus 1 0 2866 species 1587 Lactobacillus helveticus Lactobacillus johnsonii 33959 species 0 4781 1 species 0 4110 1 1584 Lactobacillus delbrueckii 2657 0 species 1 1604 Lactobacillus amylovorus Lactobacillus gasseri 1596 species 0 4322 1 1 2058 0 species Lactobacillus acidophilus 1579 1513 0 species 1 Lactobacillus jensenii 109790 1 0 1355 species Lactobacillus gallinarum 52242 Lactobacillus kefiranofaciens 267818 1 species 0 1561 Lactobacillus acetotolerans 1600 1 species 0 1521 1 species 0 927 Lactobacillus amylolyticus 83683 2620435 4 4164 0 no rank Lactobacillus sp. wkB8 1545702 0 1167 species 1 Lactobacillus sp. D1501 2108362 1 species 0 827 2099789 Lactobacillus sp. CBA3606 1 0 species 1041 Lactobacillus sp. CBA3605 2099788 1129 0 species 1 0 8072 genus 6 1 30 1253 Pediococcus 1670797 species group 0 1074 1 species 0 1074 1 Pediococcus acidilactici 1254 1 species 0 1835 51663 Pediococcus damnosus 1255 Pediococcus pentosaceus 1 species 0 2386 1 0 1427 species 187452 Pediococcus claussenii 114090 Pediococcus inopinatus 0 species 1320 1 2742598 genus 0 5417 3 1613 Lactobacillus fermentum 1 0 745 species 3550 0 species 1 1598 Lactobacillus reuteri Lactobacillus mucosae 97478 1 1122 0 species 1 0 964 genus 2767877 148814 Lactobacillus kunkeei 1 0 species 964 0 16808 genus 4 2767887 0 species 1608 1 Lactobacillus acidipiscis 89059 Lactobacillus salivarius 1624 1 9268 0 species species 0 1283 1 1601 Lactobacillus agilis Lactobacillus ruminis 1623 1 0 species 4649 2767889 2 0 2766 genus Lactobacillus coryniformis 1610 species 0 1715 1 375175 Lactobacillus backii species 0 1051 1 2767892 genus 0 1031 1 1 1031 0 species 240427 Lactobacillus paracollinoides 0 family 12570 8 1 186827 39 Aerococcaceae 1606 1375 Aerococcus 7 1 0 12531 genus 87541 Aerococcus christensenii 0 1792 species 1 Aerococcus urinaeequi 51665 2634 0 species 1 0 2514 species 1 Aerococcus sanguinicola 119206 1376 Aerococcus urinae species 0 1501 1 1 species 0 1196 128944 Aerococcus urinaehominis 1 species 0 1288 Aerococcus viridans 1377 20898 0 family 1 18 70 81850 Leuconostocaceae 2 46254 Oenococcus genus 0 952 1 2 950 0 species 1 1247 Oenococcus oeni 13654 0 genus 9 1 67 1243 Leuconostoc Leuconostoc lactis 1246 1 0 species 490 1 species 0 1167 Leuconostoc carnosum 1252 1 species 0 2060 Leuconostoc kimchii 136609 0 1851 species 1 1244 Leuconostoc gelidum 1245 Leuconostoc mesenteroides 1 0 species 2373 1 0 no rank 1104 2685106 Leuconostoc sp. C2 979982 1 0 species 1104 33964 Leuconostoc citreum 0 3885 species 1 255248 Leuconostoc garlicum 0 species 657 1 1 6 0 genus 6222 Weissella 46255 63 1 0 species 1451 Weissella cibaria 137591 species 0 1149 1 1631871 Weissella jogaejeotgali Weissella koreensis 165096 1 species 0 1037 1 1356 0 species 1249 Weissella paramesenteroides Weissella ceti 759620 species 0 1166 1 81852 393 Enterococcaceae 0 107485 family 1 19 12 1 0 93197 genus Enterococcus 1350 5319 1 0 species 2141 37734 Enterococcus casseliflavus 1 species 0 47098 Enterococcus faecium 1352 1354 Enterococcus hirae 1 0 species 3061 3 0 no rank 4943 2608891 1 1393 0 species Enterococcus sp. FDAARGOS_163 2060306 Enterococcus sp. CR-Ec1 2057791 0 1395 species 1 Enterococcus sp. FDAARGOS_375 2060307 1 2155 0 species Enterococcus thailandicus 417368 0 3386 species 1 1 0 species 3204 Enterococcus mundtii 53346 2005703 Enterococcus wangshanyuanii 0 species 2818 1 1351 Enterococcus faecalis 1 species 0 16948 Enterococcus durans 53345 1 0 4279 species 51668 20 Tetragenococcus 1 2 genus 0 4756 Tetragenococcus halophilus 51669 0 4736 species 1 2737 12 Vagococcus 6463 0 genus 3 1 Vagococcus penaei 633807 1 0 species 2783 1 3668 0 species Vagococcus teuberi 519472 1 genus 0 2676 33969 1 0 2676 species 33970 Melissococcus plutonius 1300 5926 Streptococcaceae 49 1 2816688 0 family Lactococcus 1357 19 5 1 20728 0 genus 1366 Lactococcus raffinolactis species 0 1563 1 species 0 2833 1 1363 Lactococcus garvieae Lactococcus piscium 1364 0 1474 species 1 1358 Lactococcus lactis 0 14839 species 1 17285 1301 Streptococcus 0 2790034 genus 43 1 1 0 41411 species 1302 Streptococcus gordonii species 0 3765 1 1309 Streptococcus mutans species 0 247553 1 Streptococcus salivarius 1304 1 0 1532579 species Streptococcus parasanguinis 1318 Streptococcus halotolerans 1814128 1 0 species 1879 315405 Streptococcus gallolyticus 6724 0 species 1 150055 Streptococcus lutetiensis 0 species 12085 1 Streptococcus pluranimalium 82348 0 2215 species 1 102684 Streptococcus infantarius 14115 0 species 1 1 species 0 2257 Streptococcus himalayensis 1888195 Streptococcus sanguinis 1305 63410 0 species 1 7 no rank 0 535908 2608887 0 140985 species 1 1759399 Streptococcus sp. A12 Streptococcus sp. I-G2 1156431 1 0 135725 species 1 0 146583 species Streptococcus sp. I-P16 1156433 0 3152 species 1 Streptococcus sp. 'group B' 1319 Streptococcus sp. NPS 308 1902136 1 0 8479 species 0 species 36409 1 712633 Streptococcus sp. oral taxon 431 Streptococcus sp. FDAARGOS_192 1839799 0 species 64575 1 257758 Streptococcus pseudopneumoniae 6847 0 species 1 119603 2 6100 0 species group 1 0 3016 species Streptococcus equi 1336 1 0 species 3084 1334 Streptococcus dysgalactiae 1 species 0 38001 1307 Streptococcus suis 1 0 species 17465 1313 Streptococcus pneumoniae 0 2000 species 1 1811193 Streptococcus pantholopis 1 0 species 2174 1825069 Streptococcus marmotae 1 0 species 3335 1348 Streptococcus parauberis Streptococcus iniae 1346 0 3277 species 1 0 species 29978 1 Streptococcus oralis 1303 15602 0 species 1 45634 Streptococcus cristatus 59310 Streptococcus macedonicus 1 0 2872 species Streptococcus merionis 400065 0 2115 species 1 1 11832 0 species Streptococcus pasteurianus 197614 0 23577 species 1 28037 Streptococcus mitis 1 0 19516 species 1311 Streptococcus agalactiae Streptococcus thermophilus 1308 species 0 17139 1 1 0 species 38704 1335 Streptococcus equinus 1314 Streptococcus pyogenes 0 species 4872 1 1349 Streptococcus uberis 1 0 species 2301 0 56171 species group 3 671232 Streptococcus intermedius 1338 7049 0 species 1 76860 Streptococcus constellatus 0 species 9207 1 1 0 species 39915 1328 Streptococcus anginosus 1326 Streptococcus acidominimus 1 0 species 4970 11 1 0 family 20687 44 186828 Carnobacteriaceae 20 2747 Carnobacterium 5 1 0 genus 12267 0 4161 species 1 Carnobacterium maltaromaticum 2751 257487 2 4937 0 no rank 1 0 species 2212 Carnobacterium sp. CP1 1564681 1 0 2725 species Carnobacterium sp. 17-4 208596 1 3149 0 species 147709 Carnobacterium inhibens 0 3435 genus 2 1 Marinilactibacillus 191769 16 no rank 0 3419 1 2632303 1911586 Marinilactibacillus sp. 15R 3419 0 species 1 0 genus 4941 1 3 Jeotgalibaca 1470540 29 708126 Jeotgalibaca dankookensis 1 species 0 1570 2621505 1 0 3342 no rank 0 species 3342 1 Jeotgalibaca sp. PTS2502 1903686 Tissierellia 78 1737404 0 36832 class 18 1 15 1 0 order 35206 1033 1737405 Tissierellales Peptoniphilaceae 1570339 6566 1 12 family 0 30675 150022 9 Finegoldia 1 2 genus 0 5957 1260 Finegoldia magna 1 species 0 5948 Peptoniphilus 19 162289 0 2689 genus 2 1 1 2670 0 no rank 2637196 1 0 species 2670 Peptoniphilus sp. ING2-D1G 1912856 3135 0 genus 3 1 Anaerococcus 5 165779 Anaerococcus mediterraneensis 1870984 species 0 1370 1 33034 Anaerococcus prevotii 0 1760 species 1 1 2 0 3250 genus 36 543311 Parvimonas 33033 Parvimonas micra 1 species 0 3214 genus 0 9078 2 1 Murdochiella 1161127 1 0 9077 species 1 Murdochiella vaginalis 1852373 2 1 family 0 3498 Gottschalkiaceae 2042895 6 1505664 1 0 3492 genus 0 species 3492 1 Gottschalkia acidurici 1556 0 1548 no rank 2 1737407 27 1582879 Ezakiella 2 1 genus 0 1548 1 0 1521 species Ezakiella massiliensis 1852374 0 class 819023 1 31 909932 92 Negativicutes Acidaminococcales 1843488 17 order 0 13531 1 5 Acidaminococcaceae 909930 59 family 0 13514 4 1 1 3 0 13455 genus Acidaminococcus 904 119 1 5592 0 species Acidaminococcus fermentans 905 0 species 7744 1 Acidaminococcus intestini 187327 67 909929 Selenomonadales 1 14 order 0 32632 Sporomusaceae 19 1843490 0 6625 family 1 4 Pelosinus 365348 8 0 6606 genus 3 1 0 2985 species 1 365349 Pelosinus fermentans 2629460 3613 0 no rank 1 3613 0 species 1 484770 Pelosinus sp. UFO1 Selenomonadaceae 155 1843491 0 25940 family 1 9 1 2 0 6539 genus Megamonas 6 158846 0 6533 species 1 Megamonas hypermegale 158847 0 genus 19246 1 6 970 250 Selenomonas 0 6023 species 1 971 Selenomonas ruminantium 0 9322 no rank 3 2637378 0 2774 species 1 Selenomonas sp. oral taxon 478 712538 713030 Selenomonas sp. oral taxon 136 1 species 0 3908 1884263 Selenomonas sp. oral taxon 920 1 species 0 2640 Selenomonas sputigena 69823 0 3651 species 1 772768 0 order 1 11 Veillonellales 2047 1843489 Veillonellaceae 31977 1913 family 0 770721 10 1 Negativicoccus 909928 10 2 1 genus 0 1625 0 species 1615 1 1702287 Negativicoccus massiliensis 39948 24 Dialister 2 1 genus 0 2479 1 2455 0 species 39950 Dialister pneumosintes 0 genus 11071 2 1 906 954 Megasphaera 907 Megasphaera elsdenii 0 10117 species 1 3 1 753633 0 genus 30 29465 Veillonella 248315 Veillonella rodentium 1 44419 0 species Veillonella parvula 29466 1 species 0 709184 72 201174 Actinobacteria 1 645 0 phylum 3837673 0 no rank 860 4 1752188 0 species 194 1 1848255 Actinobacteria bacterium IMCC25003 1 428 0 species 1848754 Actinobacteria bacterium IMCC19121 1848756 Actinobacteria bacterium IMCC26103 1 185 0 species 1848755 Actinobacteria bacterium IMCC26077 53 0 species 1 84998 367 Coriobacteriia 1 32 0 179700 class order 0 31902 1 14 209 84999 Coriobacteriales 1643824 272 Atopobiaceae 0 15778 family 1 7 2767353 genus 0 2285 1 Atopobium parvulum 1382 1 2285 0 species Atopobium 1380 1 0 3 genus 133925 84 Olsenella 1 4 0 13218 genus 2638792 no rank 0 2974 1 1 2974 0 species Olsenella sp. oral taxon 807 712411 3680 0 species 1 133926 Olsenella uli 1805478 Olsenella sp. Marseille-P2300 1 0 6480 species Coriobacteriaceae 84107 1196 0 15915 family 1 6 84113 1 3903 0 no rank 1531429 Coriobacteriaceae bacterium 68-1-3 3903 0 species 1 1 2 8969 0 genus 102106 28 Collinsella Collinsella aerofaciens 74426 0 species 8941 1 genus 0 1847 2 1 Coriobacterium 33870 3 0 1844 species 1 Coriobacterium glomerans 33871 1643822 488 Eggerthellales 1 17 147431 0 order 1643826 12264 Eggerthellaceae 1 16 146943 0 family 0 genus 2188 1 79603 1 0 species 2188 79604 Denitrobacterium detoxificans 3 1 0 genus 13491 43 644652 Gordonibacter Gordonibacter massiliensis 1841863 species 0 6143 1 Gordonibacter urolithinfaciens 1335613 1 species 0 7305 84162 4 Cryptobacterium 0 genus 831 1 2 827 0 species 1 Cryptobacterium curtum 84163 84108 6 Slackia 2 1 0 genus 5113 84110 Slackia heliotrinireducens 1 0 5107 species Adlercreutzia 447020 3 1 2 0 5461 genus species 0 5458 1 446660 Adlercreutzia equolifaciens Phoenicibacter 1981050 2 0 8600 genus 1 2 Phoenicibacter massiliensis 1944646 1 0 8598 species genus 0 98995 1 3 84111 144 Eggerthella 84112 Eggerthella lenta 96568 0 species 1 2648737 1 2283 0 no rank 502558 Eggerthella sp. YY7918 2283 0 species 1 1 5 class 0 1472 Thermoleophilia 2 1497346 588673 74 Solirubrobacterales 0 order 1470 1 4 Conexibacteraceae 320583 18 1 3 1396 0 family 1 2 1378 0 genus Conexibacter 191494 6 1 1372 0 species 191495 Conexibacter woesei Actinobacteria 6358 1760 1 592 class 0 3653125 1583 0 order 4 1 85014 8 Glycomycetales 1575 0 family 1 3 Glycomycetaceae 98 85034 genus 0 1477 2 1 Stackebrandtia 283810 7 species 0 1470 1 283811 Stackebrandtia nassauensis 40785 0 order 19 1 Actinomycetales 2037 18 5670 2049 Actinomycetaceae family 0 40767 1 18 genus 0 3800 2 1 Mobiluncus 2050 178 1 3622 0 species Mobiluncus curtisii 2051 1637 0 genus 1 2 Trueperella 1069494 2 species 0 1635 1 Trueperella pyogenes 1661 910 0 genus 1 28263 Arcanobacterium haemolyticum 28264 species 0 910 1 1 5521 0 genus 2529408 5521 0 species 1 Actinomyces meyeri 52773 Actinotignum 1653174 1 1 2 0 827 genus 1 species 0 826 Actinotignum schaalii 59505 1 9 0 genus 22402 Actinomyces 1654 134 0 species 1772 1 Actinomyces radicidentis 111015 4279 0 species 1 Actinomyces oris 544580 Actinomyces gaoshouyii 1960083 1 0 1313 species 1 0 species 9948 Actinomyces pacaensis 1852377 3 0 no rank 4651 2609248 2081702 Actinomyces sp. oral taxon 897 1 0 species 1314 0 1517 species 1 Actinomyces sp. Chiba101 1851395 1 0 1820 species 712122 Actinomyces sp. oral taxon 414 species 0 305 1 1912795 Actinomyces sp. VUL4_3 125 85004 Bifidobacteriales 1 26 3110161 0 order 1 25 0 3110036 family Bifidobacteriaceae 9449 31953 1 196081 Scardovia 1 2 genus 0 801 0 species 800 1 78259 Scardovia inopinata 5357 0 genus 1 2 Gardnerella 2701 1 2702 Gardnerella vaginalis 1 0 5356 species 1 19 0 3093407 genus 1678 1947 Bifidobacterium 1 0 species 1799 Bifidobacterium dentium 1689 Bifidobacterium actinocoloniiforme 638619 species 0 1600 1 28025 Bifidobacterium animalis 1 0 1876 species 1 708 0 species 1687 Bifidobacterium coryneforme Bifidobacterium pseudocatenulatum 28026 0 species 10593 1 species 0 53432 1 Bifidobacterium bifidum 1681 2 1 0 species 18304 7572 1686 Bifidobacterium catenulatum 630129 Bifidobacterium kashiwanohense 1 subspecies 0 10732 Bifidobacterium adolescentis 1680 0 species 10250 1 33905 Bifidobacterium thermophilum 0 species 1523 1 35760 Bifidobacterium choerinum 1 0 1627 species Bifidobacterium longum 216816 species 0 2744741 1 1694 Bifidobacterium pseudolongum 1 2608 0 species 0 species 1498 1 Bifidobacterium asteroides 1684 0 species 5250 1 1683 Bifidobacterium angulatum 158787 Bifidobacterium scardovii 3984 0 species 1 1691 Bifidobacterium indicum species 0 787 1 1 0 species 230880 Bifidobacterium breve 1685 1 genus 0 1022 196082 1022 0 species 1 Parascardovia denticolens 78258 2 1048 0 no rank 1643818 Thermobispora 147067 10 1 2 1048 0 genus Thermobispora bispora 2006 0 species 1038 1 235 0 order 1 4 Acidothermales 1643683 1 0 family 234 1 3 2 85032 Acidothermaceae 3 28048 Acidothermus 2 1 0 genus 232 1 species 0 229 28049 Acidothermus cellulolyticus 622452 2 Kineosporiales 1246 0 order 1 4 83778 20 Kineosporiaceae 3 1 0 family 1244 0 genus 1224 2 1 3 33981 Kineococcus Kineococcus radiotolerans 131568 1 species 0 1221 Micrococcales 825 85006 1 139 0 order 147657 145360 2 family 0 1009 60919 6 Sanguibacter 1 2 0 genus 1009 1003 0 species 1 Sanguibacter keddieii 60920 45 1 family 0 25434 85023 253 Microbacteriaceae 458 0 no rank 3 1655488 0 458 clade 3 1655489 529883 3 Rhodoluna 458 0 genus 1 3 0 291 species 1 Rhodoluna lacicola 529884 0 164 species 1 535712 Candidatus Rhodoluna planktonica Microcella 337004 2 2 1 genus 0 459 species 0 457 1 279828 Microcella alkaliphila 2034 67 Curtobacterium 4 1 genus 0 2232 69373 Curtobacterium pusillum 0 820 species 1 2 no rank 0 1345 257496 Curtobacterium sp. BH-2-1-1 1905847 1 0 species 506 0 839 species 1 Curtobacterium sp. MR_MD2014 1561023 4 33886 Rathayibacter 0 genus 677 3 1 1 species 0 267 Rathayibacter toxicus 145458 Rathayibacter tritici 33888 0 species 406 1 1434032 0 genus 144 1 1 0 species 144 1159327 Pontimonas salivibrio Microbacterium 33882 114 1 14 genus 0 10216 Microbacterium hominis 162426 0 1028 species 1 Microbacterium aurum 36805 1 1123 0 species 0 species 734 1 2033 Microbacterium testaceum 300019 Microbacterium paludicola 1 species 0 720 84292 Microbacterium chocolatum 0 species 481 1 8 0 no rank 6016 2609290 1714373 Microbacterium sp. No. 7 1 0 844 species Microbacterium sp. str. 'China' 2103230 1 species 0 1042 Microbacterium sp. BH-3-3-3 1906742 species 0 671 1 1 0 628 species Microbacterium sp. CGR1 1696072 Microbacterium sp. 1.5R 1916917 1 species 0 613 367477 Microbacterium sp. XT11 680 0 species 1 1795053 Microbacterium sp. PAMC 28756 1 species 0 854 1 684 0 species 1938334 Microbacterium sp. TPU 3598 69578 14 Cryobacterium 1 3 0 2182 genus no rank 0 1204 1 2649013 1204 0 species 1 Cryobacterium sp. LW097 1978566 0 964 species 1 670052 Cryobacterium arcticum genus 0 337 1 1705353 1 337 0 species 708131 Aurantimicrobium minutum Clavibacter 171 1573 genus 0 3565 1 6 776 28447 Clavibacter michiganensis 5 1 3394 0 species Clavibacter insidiosus 33014 1 0 subspecies 705 subspecies 0 735 1 1874630 Clavibacter capsici 0 subspecies 631 1 31963 Clavibacter nebraskensis 0 subspecies 547 1 Clavibacter sepedonicus 31964 genus 0 644 1 33877 1 644 0 species Agromyces aureus 453304 0 genus 1727 1 2 110932 3 Leifsonia Leifsonia xyli 1575 1 species 0 1724 0 743 genus 1 447237 2626248 1 0 743 no rank 1 0 743 species Frondihabitans sp. PAMC 28766 1795630 0 997 genus 2 1 Microterricola 518733 1 Microterricola viridarii 412690 1 0 996 species 0 800 genus 1 1759331 1619308 Cnuibacter physcomitrellae 0 800 species 1 0 4799 family 1 9 Promicromonosporaceae 85017 57 Isoptericola 254250 26 1 3 0 genus 1762 Isoptericola variabilis 139208 1 species 0 790 1 946 0 species 372663 Isoptericola dokdonensis 1 2 0 genus 1479 4 186188 Xylanimonas 1 0 1475 species 186189 Xylanimonas cellulosilytica Cellulosimicrobium 23 157920 0 genus 1501 3 1 1 0 767 no rank 2624466 1 species 0 767 1980001 Cellulosimicrobium sp. TH-20 1710 Cellulosimicrobium cellulans 711 0 species 1 Dermabacteraceae 53 85020 0 family 6767 10 1 1 genus 0 401 472568 1 0 401 species 472569 Devriesea agamarum Dermabacter 36739 5 500 0 genus 1 2 Dermabacter vaginalis 1630135 1 species 0 495 1 6 5813 0 genus 43668 166 Brachybacterium 1331682 Brachybacterium ginsengisoli 1 species 0 1119 2017485 Brachybacterium sp. VR2415 0 1162 species 1 species 0 1276 1 43669 Brachybacterium faecium Brachybacterium sp. VM2412 2017484 1 1108 0 species 2623841 1 0 no rank 982 1903186 Brachybacterium sp. P6-10-X1 0 species 982 1 85021 49 Intrasporangiaceae 0 4408 family 1 9 0 1723 genus 1 2 Arsenicicoccus 35 267408 2663846 no rank 0 1688 1 1 1688 0 species Arsenicicoccus sp. oral taxon 190 1658671 0 554 genus 1 2 Janibacter 53457 14 0 species 540 1 857417 Janibacter indicus 2 1 0 739 genus 9 53357 Intrasporangium Intrasporangium calvum 53358 species 0 730 1 1343 0 genus 1 2 Serinicoccus 265976 52 1 0 1291 species Serinicoccus sp. JLT9 1758689 1 3 354 0 family 11 85018 Dermatophilaceae 1862 3 Dermatophilus 0 343 genus 2 1 Dermatophilus congolensis 1863 1 0 species 340 0 2998 family 1 6 Cellulomonadaceae 13 85016 Cellulomonas 40 1707 5 1 2985 0 genus Cellulomonas flavigena 1711 1 species 0 1043 Cellulomonas gilvus 11 1 631 0 species 1 481 0 no rank 2620175 2003551 Cellulomonas sp. PSBB021 0 481 species 1 1 0 790 species Cellulomonas fimi 1708 225 0 family 2 85022 43673 2 Jonesia 0 225 genus 2 1 Jonesia denitrificans 43674 1 0 223 species 577468 1 0 no rank 67 1 genus 0 67 2038 Tropheryma whipplei 2039 0 67 species 1 1738 1268 Micrococcaceae 1 39 0 95911 family 0 genus 1052 1 2 Sinomonas 596707 20 0 1032 species 1 Sinomonas atrocyanea 37927 1 2 0 genus 564 22 1868332 Neomicrococcus 1 species 0 542 556325 Neomicrococcus aestuarii 4 1 0 genus 2690 10 57493 Kocuria Kocuria palustris 71999 1 0 species 792 72000 Kocuria rhizophila 1 species 0 906 Kocuria flava 446860 0 982 species 1 42 1742993 Pseudarthrobacter 1 4 0 3528 genus 1256 0 species 1 85085 Pseudarthrobacter chlorophenolicus Pseudarthrobacter phenanthrenivorans 361575 species 0 1072 1 1 species 0 1158 121292 Pseudarthrobacter sulfonivorans 15 1 0 genus 15303 Arthrobacter 1663 298 Arthrobacter crystallopoietes 37928 0 species 1534 1 656366 Arthrobacter alpinus 0 species 1541 1 0 11930 no rank 12 235627 0 835 species 1 290399 Arthrobacter sp. FB24 Arthrobacter sp. PGP41 2079227 1 1099 0 species 0 933 species 1 1494608 Arthrobacter sp. PAMC 25486 1118963 Arthrobacter sp. Rue61a 0 species 705 1 0 species 1262 1 Arthrobacter sp. QXT-31 1357915 1308 0 species 1 1690248 Arthrobacter sp. LS16 607 0 species 1 Arthrobacter sp. ATCC 21022 1771959 Arthrobacter sp. ZXY-2 1806905 0 684 species 1 938 0 species 1 1704044 Arthrobacter sp. ERGS1:01 1652545 Arthrobacter sp. YC-RL1 0 1334 species 1 0 species 931 1 Arthrobacter sp. YN 2020486 0 species 1294 1 Arthrobacter sp. U41 1849032 0 1319 genus 2 1 1269 9 Micrococcus 1 0 species 1310 1270 Micrococcus luteus 1645 1 genus 0 319 1 319 0 species 1646 Renibacterium salmoninarum 1742992 1 Paenarthrobacter 2 1 0 genus 759 1 species 0 758 43663 Paenarthrobacter aurescens genus 0 468 1 2078575 1 0 species 468 1618207 Arthrobacter sp. IHBB 11108 66662 0 genus 3 1 Rothia 32207 10 Rothia mucilaginosa 43675 0 species 61762 1 0 species 4890 1 2047 Rothia dentocariosa 1 2 0 1509 genus Glutamicibacter 1742989 5 0 species 1504 1 256701 Glutamicibacter arilaitensis 2 0 825 family 125316 1 84756 Beutenbergia 0 genus 825 2 1 0 824 species 1 84757 Beutenbergia cavernae 1654 0 family 1 3 10 85019 Brevibacteriaceae 14 1696 Brevibacterium 2 1 genus 0 1644 species 0 1630 1 1703 Brevibacterium linens 1 7 0 family 2381 53 145357 Dermacoccaceae Dermacoccus 7 57495 1 2 genus 0 831 Dermacoccus nishinomiyaensis 1274 1 0 824 species Kytococcus 57499 27 1 2 genus 0 782 1276 Kytococcus sedentarius 1 0 755 species Luteipulveratus 6 745364 0 715 genus 1 2 Luteipulveratus mongoliensis 571913 1 species 0 709 85011 245 Streptomycetales 1 82 0 118126 order Streptomycetaceae 759 2062 81 1 0 117881 family Streptomyces 3937 1883 0 110460 genus 1 75 1914 Streptomyces lavendulae 0 species 1602 1 1901 Streptomyces clavuligerus 1 species 0 1606 1277 0 species 1 1038928 Streptomyces xinghaiensis 1 0 species 1040 Streptomyces peucetius 1950 24 0 30245 no rank 2593676 1661694 Streptomyces sp. Tue 6075 species 0 1066 1 Streptomyces sp. TN58 234612 1 species 0 1102 Streptomyces sp. 769 1262452 1700 0 species 1 Streptomyces sp. CdTB01 1725411 1490 0 species 1 Streptomyces sp. FR-008 206662 1 species 0 1670 1 1777 0 species 2135430 Streptomyces sp. P3 465541 Streptomyces sp. Mg1 0 1200 species 1 species 0 1186 1 2094021 Streptomyces sp. WAC00288 1 0 species 684 Streptomyces sp. SirexAA-E 862751 1657 0 species 1 Streptomyces sp. M56 1495638 Streptomyces sp. RTd22 1841249 1426 0 species 1 Streptomyces sp. CLI2509 1984801 1 0 1132 species 1 0 1195 species Streptomyces sp. fd1-xmd 1812480 1649184 Streptomyces sp. CFMR 7 1 0 species 791 1 1292 0 species 1972846 Streptomyces sp. Sge12 1 0 873 species 1837283 Streptomyces sp. S8 1964449 Streptomyces sp. 3211 1 species 0 1186 1561022 Streptomyces sp. CCM_MD2014 1 1192 0 species 0 species 1167 1 Streptomyces sp. SAT1 1849967 444103 Streptomyces sp. CNQ-509 0 species 1435 1 1 species 0 948 Streptomyces sp. PAMC 26508 1265601 species 0 1400 1 Streptomyces sp. CMB-StM0423 2059884 Streptomyces sp. MOE7 1961713 0 species 1741 1 935 0 species 1 Streptomyces sp. 4F 1751294 1 species 0 1246 33903 Streptomyces avermitilis 1477431 0 species group 2929 2 1 0 1496 species 42239 Streptomyces sampsonii 1 species 0 1433 Streptomyces coelicolor 1902 0 species group 2375 2 629295 1109 0 species subgroup 1 1482558 1 0 species 1109 Streptomyces globisporus 1908 1482596 0 1266 species subgroup 1 0 species 1266 1 1911 Streptomyces griseus Streptomyces parvulus 146923 1133 0 species 1 0 1300 species 1 Streptomyces rubrolavendulae 285473 0 species 1474 1 Streptomyces chartreusis 1969 29303 Streptomyces cattleya 1 0 species 1626 Streptomyces violaceusniger 68280 1 0 species 1734 species 0 1323 1 68192 Streptomyces cyaneogriseus 68214 Streptomyces griseochromogenes 1 species 0 1320 Streptomyces formicae 1616117 0 934 species 1 0 1011 species 1 Streptomyces pluripotens 1355015 379067 Streptomyces bingchenggensis 2531 0 species 1 Streptomyces gilvosporeus 553510 1 species 0 1433 38300 Streptomyces pristinaespiralis 0 1158 species 1 75293 Streptomyces autolyticus 1 0 species 1699 47763 Streptomyces lydicus 4396 0 species 1 0 3181 species 1 1888 Streptomyces albus 0 species 1374 1 67267 Streptomyces alboflavus 0 species 1644 1 1930 Streptomyces scabiei 0 species 879 1 68202 Streptomyces fulvissimus Streptomyces niveus 193462 1 1038 0 species Streptomyces leeuwenhoekii 1437453 1 species 0 1076 1642299 Streptomyces alfalfae 1 species 0 1478 1 0 species 1386 Streptomyces noursei 1971 1 0 1219 species Streptomyces albireticuli 1940 68570 Streptomyces albulus 1501 0 species 1 Streptomyces malaysiensis 92644 1478 0 species 1 1915 Streptomyces lincolnensis 1 0 species 1684 0 species 1011 1 Streptomyces collinus 42684 1 0 2324 species 68249 Streptomyces pactum 1 species 0 1415 Streptomyces glaucescens 1907 0 1510 species 1 Streptomyces vietnamensis 362257 Streptomyces sp. XZHG99 2049881 1 0 838 species 1916 Streptomyces lividans species 0 971 1 1 3823 0 species 1912 Streptomyces hygroscopicus 1783515 Streptomyces sp. S10(2016) 1 1404 0 species Streptomyces reticuli 1926 1545 0 species 1 1 2234 0 species Streptomyces venezuelae 54571 0 species 1253 1 408015 Streptomyces xiamenensis species 0 989 1 Streptomyces pratensis 1169025 1 0 1651 species Streptomyces puniciscabiei 164348 0 1167 species 1 1889 Streptomyces ambofaciens 0 species 1058 1 Streptomyces violaceoruber 1935 5 1 genus 0 6662 2063 86 Kitasatospora Kitasatospora setae 2066 0 species 1647 1 1 0 species 1027 68173 Kitasatospora albolonga 0 1921 species 1 1894 Kitasatospora aureofaciens 2633591 0 1981 no rank 1 species 0 1981 1 Kitasatospora sp. MMS16-BH015 2018025 85007 936 Corynebacteriales 0 order 114913 1 162 38906 0 family 1 56 Mycobacteriaceae 216 1762 1608 1763 Mycobacterium 0 genus 22402 1 34 1809 Mycobacterium ulcerans 0 species 600 1 1769 Mycobacterium leprae 0 species 461 1 120793 4468 0 species group 8 Mycobacterium paraintracellulare 1138383 1 235 0 species 1767 299 Mycobacterium intracellulare 4 1 species 0 1163 1203599 Mycobacterium yongonense subspecies 0 200 1 0 subspecies 460 1 Mycobacterium chimaera 222805 1 0 204 subspecies 35617 Mycobacterium indicus pranii 0 species 1471 1 1764 Mycobacterium avium 1 0 species 1069 Mycobacterium colombiense 339268 Mycobacterium marseillense 701042 530 0 species 1 633 0 species 1 Mycobacterium marinum 1781 2249310 0 644 species group 1 1 0 644 species Mycobacterium shigaense 722731 77643 4 0 1413 species group 1 0 species 321 78331 Mycobacterium canettii 0 1092 species 1 3 405 1773 Mycobacterium tuberculosis 1765 Mycobacterium bovis 1 344 0 biotype Mycobacterium africanum 33894 1 0 343 biotype 482462 Mycobacterium dioxanotrophicus 1 species 0 985 0 552 species 1 Mycobacterium liflandii 261524 13 0 no rank 9539 2642494 Mycobacterium sp. djl-10 1879023 1 species 0 1124 species 0 559 1 Mycobacterium sp. KMS 189918 species 0 488 1 164756 Mycobacterium sp. MCS 778 0 species 1 212767 Mycobacterium sp. JS623 783 0 species 1 1545728 Mycobacterium sp. EPa45 1920667 Mycobacterium sp. WY10 species 0 866 1 1 0 748 species Mycobacterium sp. VKM Ac-1817D 1273687 species 0 1004 1 1570328 Mycobacterium sp. NRRL B-3805 Mycobacterium sp. YC-RL4 1682113 982 0 species 1 175 0 species 1 1168287 Mycobacterium sp. MOTT36Y Mycobacterium sp. PYR15 2051552 924 0 species 1 Mycobacterium sp. JLS 164757 1 517 0 species 0 species 591 1 1561223 Mycobacterium sp. QIA-37 29311 Mycobacterium haemophilum 1 0 species 542 1768 Mycobacterium kansasii 1 0 species 957 697025 1 0 genus 245 1 species 0 245 Hoyosella subflava 639313 12052 0 genus 13 1866885 110539 Mycobacterium vanbaalenii 1 0 955 species 0 species 927 1 1804 Mycobacterium gilvum 0 species 914 1 1810 Mycobacterium vaccae 1 0 species 923 134601 Mycobacterium goodii Mycobacterium aurum 1791 species 0 1408 1 Mycobacterium litorale 758802 0 species 813 1 0 561 species 1 Mycobacterium rhodesiae 36814 1772 Mycobacterium smegmatis 1 species 0 1334 1004 0 species 1 1795 Mycobacterium neoaurum 0 species 903 1 1797 Mycobacterium thermoresistibile 1771 Mycobacterium phlei 1 species 0 781 0 772 species 1 Mycobacterium fortuitum 1766 1 0 757 species Mycobacterium chubuense 1800 2 0 976 genus 1073531 Mycobacterium sinense 875328 species 0 453 1 1788 Mycobacterium terrae 1 0 species 523 670516 5 genus 0 3015 1179 0 species 1 36809 Mycobacterium abscessus 1520670 Mycobacterium stephanolepidis 0 499 species 1 83262 Mycobacterium immunogenum 0 species 387 1 Mycobacterium saopaulense 1578165 species 0 444 1 Mycobacterium chelonae 1774 1 506 0 species 0 family 1621 1 4 Tsukamurellaceae 30 85028 Tsukamurella 11 2060 1 3 genus 0 1591 Tsukamurella paurometabola 2061 0 species 758 1 Tsukamurella tyrosinosolvens 57704 species 0 822 1 316606 17 Segniliparaceae 3 1 0 284 family Segniliparus 4 286801 0 genus 267 2 1 286802 Segniliparus rotundus 0 263 species 1 Corynebacteriaceae 262 1653 family 0 38207 1 52 Corynebacterium 1716 1033 51 1 37945 0 genus 1231000 Corynebacterium lactis 0 species 991 1 species 0 722 1 Corynebacterium stationis 1705 1 0 856 species Corynebacterium frankenforstense 1230998 1 0 species 549 Corynebacterium deserti 1408191 1 species 0 972 Corynebacterium variabile 1727 1 0 761 species 1223514 Corynebacterium humireducens 136857 Corynebacterium testudinoris 597 0 species 1 Corynebacterium urealyticum 43771 952 0 species 1 Corynebacterium resistens 258224 1 430 0 species 160386 Corynebacterium casei 1 0 645 species 92706 [Brevibacterium] flavum 1 393 0 species 767 0 species 1 Corynebacterium ureicelerivorans 401472 203263 Corynebacterium aquilae species 0 889 1 species 0 1218 1 349751 Corynebacterium marinum Corynebacterium aurimucosum 169292 0 species 936 1 Corynebacterium crudilactis 1652495 species 0 351 1 species 0 351 1 Corynebacterium phocae 161895 0 627 species 1 1717 Corynebacterium diphtheriae 0 832 species 1 Corynebacterium singulare 161899 0 1068 species 1 1718 Corynebacterium glutamicum 0 563 species 1 187491 Corynebacterium glaucum 1 species 0 693 161896 Corynebacterium camporealensis 1 754 0 species Corynebacterium atypicum 191610 807 0 species 1 Corynebacterium doosanense 1121358 species 0 690 1 575200 Corynebacterium maris 225326 Corynebacterium halotolerans 0 924 species 1 146827 Corynebacterium simulans 0 1153 species 1 42817 Corynebacterium argentoratense 557 0 species 1 Corynebacterium ulcerans 65058 0 species 763 1 28028 Corynebacterium flavescens 0 474 species 1 0 412 species 1 Corynebacterium cystitidis 35757 1 0 species 347 89154 Corynebacterium terpenotabidum 1697 Corynebacterium ammoniagenes 1 0 species 770 38289 Corynebacterium jeikeium 1 0 1569 species 1 729 0 species 1072256 Corynebacterium uterequi Corynebacterium pseudotuberculosis 1719 1 species 0 379 species 0 319 1 571915 Corynebacterium mustelae 1 0 1146 species Corynebacterium sphenisci 191493 1 1079 0 species 152794 Corynebacterium efficiens species 0 667 1 108486 Corynebacterium falsenii 1 species 0 255 Corynebacterium kutscheri 35755 1 0 728 species 1721 Corynebacterium callunae 1 species 0 793 Corynebacterium imitans 156978 Corynebacterium vitaeruminis 38305 0 species 1537 1 43770 Corynebacterium striatum 0 species 1333 1 Corynebacterium glyciniphilum 1404244 1 0 species 664 161879 Corynebacterium kroppenstedtii 1 species 0 308 1050174 Corynebacterium epidermidicanis 1 species 0 470 2624378 2 no rank 0 1122 species 0 491 1 702967 Corynebacterium sp. NML98-0116 1487956 Corynebacterium sp. ATCC 6931 0 species 631 1 Nocardiaceae 229 85025 0 27120 family 1 31 Rhodococcus 1827 630 1 23 0 genus 16406 1 0 688 species 1828 Rhodococcus fascians Rhodococcus opacus 37919 1 species 0 1981 132919 Rhodococcus jostii 1 species 0 949 43767 Rhodococcus hoagii 1 species 0 570 Rhodococcus ruber 1830 1 865 0 species 1829 Rhodococcus rhodochrous 1 species 0 578 0 1072 species 1 Rhodococcus aetherivorans 191292 Rhodococcus qingshengii 334542 1 0 species 524 192944 12 no rank 0 7141 species 0 748 1 1805827 Rhodococcus sp. MTM3W5.2 679318 Rhodococcus sp. WMMA185 0 324 species 1 1 species 0 451 1727214 Rhodococcus sp. H-CA8f Rhodococcus sp. BH4 1807790 1 species 0 511 1653479 Rhodococcus sp. PBTS 2 1 501 0 species Rhodococcus sp. PBTS 1 1653478 0 species 684 1 495 0 species 1 Rhodococcus sp. YL-1 1045808 1 species 0 471 Rhodococcus sp. 008 1723645 species 0 619 1 Rhodococcus sp. B7740 1564114 1142 0 species 1 Rhodococcus sp. WB1 1033922 1 0 592 species Rhodococcus sp. p52 935199 603 0 species 1 1570939 Rhodococcus sp. 2G 1 647 0 species Rhodococcus pyridinivorans 103816 761 0 species 1 Rhodococcus erythropolis 1833 1817 208 Nocardia 0 10485 genus 1 7 455432 Nocardia terpenica 1 1433 0 species 37330 Nocardia nova 1 0 species 1261 1 0 species 2196 Nocardia brasiliensis 37326 Nocardia cyriacigeorgica 135487 0 species 2239 1 1 0 1395 species 37332 Nocardia seriolae 37329 Nocardia farcinica 1 1753 0 species 85029 15 Dietziaceae 1308 0 family 1 4 3 1 1293 0 genus Dietzia 37914 27 1 0 species 647 Dietzia timorensis 499555 1 no rank 0 619 2617939 1 619 0 species Dietzia sp. oral taxon 368 712270 697024 2 0 600 no rank 1 2 0 genus 600 10 1847725 Lawsonella 1528099 Lawsonella clevelandensis species 0 590 1 family 0 5931 1 9 Gordoniaceae 147 85026 genus 0 5784 1 8 Gordonia 2053 143 Gordonia iterans 1004901 1 0 603 species Gordonia phthalatica 1136941 0 species 1038 1 2657482 2 0 1497 no rank 2059875 Gordonia sp. YC-JH1 0 557 species 1 337191 Gordonia sp. KTR9 1 0 940 species 2054 Gordonia bronchialis 1 species 0 589 Gordonia polyisoprenivorans 84595 1 species 0 1026 1 0 species 888 2055 Gordonia terrae 1 no rank 0 239 52018 1 0 species 239 Actinobacteria bacterium IMCC26256 1650658 Micromonosporales 85008 23 20 1 order 0 19042 1 19 family 0 19019 Micromonosporaceae 28056 296 genus 0 1668 1 3 Salinispora 168694 30 168695 Salinispora tropica 1 0 580 species 1058 0 species 1 Salinispora arenicola 168697 genus 0 9 1 Verrucosispora 84593 4 1 genus 0 4133 31 673534 Plantactinospora 4102 0 no rank 3 2631981 2024580 Plantactinospora sp. KBS50 1 0 1417 species 0 1337 species 1 2071627 Plantactinospora sp. BB1 Plantactinospora sp. BC1 2108470 1 0 1348 species Micromonospora 115 1873 1 4 0 genus 4256 1 species 0 1325 Micromonospora aurantiaca 47850 0 1662 no rank 1 2617518 Micromonospora sp. L5 648999 1 species 0 1662 Verrucosispora maris 1003110 species 0 1154 1 Actinoplanes 120 1865 1 6 genus 0 8657 1866 Actinoplanes missouriensis 1557 0 species 1 no rank 0 4874 3 2626549 1517 0 species 1 134676 Actinoplanes sp. SE50/110 Actinoplanes sp. N902-109 649831 1840 0 species 1 0 species 1517 1 Actinoplanes sp. SE50 2033844 Actinoplanes friuliensis 196914 1 0 species 2106 1 41 0 39453 order Pseudonocardiales 85010 46 1 40 39407 0 family Pseudonocardiaceae 2070 585 1 3 genus 0 4147 40566 87 Actinosynnema 40567 Actinosynnema mirum 1 0 species 1962 2098 0 species 1 42197 Actinosynnema pretiosum 1 6 0 5073 genus 125 65496 Actinoalloteichus 0 1072 species 1 1470176 Actinoalloteichus hoggarensis 1 872 0 species Actinoalloteichus hymeniacidonis 340345 2644606 0 no rank 1987 2 0 979 species 1 1612551 Actinoalloteichus sp. GBA129-24 1 0 1008 species 2072503 Actinoalloteichus sp. AHMU CJ021 1612552 Actinoalloteichus sp. ADI127-7 1 species 0 1017 2032 0 genus 2 1 10 43356 Kutzneria Kutzneria albida 43357 species 0 2022 1 Pseudonocardia 1847 180 1 8 0 genus 8512 240495 Pseudonocardia dioxanivorans 0 species 1243 1 6 0 7089 no rank 2619320 Pseudonocardia sp. HH130629-09 1641402 0 species 1154 1 1096868 Pseudonocardia sp. EC080625-04 1088 0 species 1 0 1396 species 1 Pseudonocardia sp. EC080610-09 1688404 0 species 1161 1 445576 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. HH130630-07 1690815 1 917 0 species Pseudonocardia sp. EC080619-01 1096856 1 0 species 1373 7 1 9685 0 genus Amycolatopsis 1813 161 0 species 1156 1 1814 Amycolatopsis methanolica Amycolatopsis japonica 208439 1 1242 0 species 2618356 2 0 no rank 2868 1911175 Amycolatopsis sp. BJA-103 1407 0 species 1 1 0 1461 species Amycolatopsis sp. AA4 1896961 1 species 0 2287 31958 Amycolatopsis orientalis Amycolatopsis mediterranei 33910 1 0 1971 species 2 1 genus 0 938 Saccharomonospora 1851 4 0 934 species 1 1852 Saccharomonospora viridis Alloactinosynnema 674734 8 2 1 0 1179 genus 1 0 1171 no rank 2636053 0 species 1171 1 Alloactinosynnema sp. L-07 1653480 Kibdelosporangium 2029 2 0 1192 genus 2 1 860235 Kibdelosporangium phytohabitans 1 0 1190 species 1 799 0 genus 142577 0 species 799 1 Prauserella marina 530584 Lentzea 9 165301 1 2 2019 0 genus 0 species 2010 1 Lentzea guizhouensis 1586287 Saccharothrix 2071 4 1 2 0 genus 1460 0 species 1456 1 Saccharothrix espanaensis 103731 1786 0 genus 1 2 14 1835 Saccharopolyspora 1772 0 species 1 Saccharopolyspora erythraea 1836 Geodermatophilales 1643682 3 0 3639 order 1 8 0 3636 family 7 1 Geodermatophilaceae 149 85030 794 0 genus 2 1 38501 10 Blastococcus Blastococcus saxobsidens 138336 species 0 784 1 Modestobacter 88138 10 0 1475 genus 1 2 0 1465 species 1 Modestobacter marinus 477641 1 2 1218 0 genus Geodermatophilus 1860 32 species 0 1186 1 1861 Geodermatophilus obscurus Nakamurellales 1643684 2 1 4 0 1669 order 1 3 0 1667 family Nakamurellaceae 85031 14 0 genus 1653 2 1 53460 2 Nakamurella species 0 1651 1 Nakamurella multipartita 53461 2039638 51 Candidatus Nanopelagicales order 0 3200 1 12 2162846 3149 0 family 11 genus 0 880 1 4 2039639 4 Candidatus Nanopelagicus Candidatus Nanopelagicus hibericus 1884915 1 species 0 141 species 0 496 1 Candidatus Nanopelagicus abundans 1884916 1884634 Candidatus Nanopelagicus limnes species 0 239 1 1 7 2269 0 genus 622681 16 Candidatus Planktophila Candidatus Planktophila sulfonica 1884904 270 0 species 1 1884914 Candidatus Planktophila dulcis 1 species 0 301 1884905 Candidatus Planktophila versatilis 0 species 533 1 1884913 Candidatus Planktophila lacus 0 535 species 1 573600 Candidatus Planktophila limnetica species 0 305 1 0 309 species 1 Candidatus Planktophila vernalis 1884907 Streptosporangiales 85012 55 1 16 12757 0 order 0 family 2314 3 1 Thermomonosporaceae 2012 19 2019 58 Thermomonospora 0 2295 genus 1 2 2020 Thermomonospora curvata 1 2237 0 species Nocardiopsaceae 62 83676 family 0 5093 1 7 Nocardiopsis 53 2013 4 1 4472 0 genus 1 1081 0 species Nocardiopsis alba 53437 1 1721 0 species Nocardiopsis dassonvillei 2014 species 0 1617 1 280236 Nocardiopsis gilva 83677 2 Thermobifida 1 2 559 0 genus Thermobifida fusca 2021 1 0 species 557 1 5 5295 0 family Streptosporangiaceae 2004 37 Streptosporangium 2000 20 2 1 genus 0 2572 1 0 species 2552 2001 Streptosporangium roseum 2 1 2686 0 genus Nonomuraea 9 83681 2593643 1 0 2677 no rank species 0 2677 1 Nonomuraea sp. ATCC 55076 1909395 1 622450 Actinopolysporales 0 order 662 1 4 Actinopolysporaceae 4 622451 1 3 family 0 661 0 657 genus 2 1 Actinopolyspora 1 1849 1 656 0 species Actinopolyspora erythraea 414996 Frankiales 85013 27 0 4753 order 1 7 1 6 family 0 4726 Frankiaceae 74712 55 1 5 0 4671 genus 49 1854 Frankia 1 0 species 449 106370 Frankia casuarinae 0 1387 no rank 1 2632575 298653 Frankia sp. EAN1pec 1 species 0 1387 1859 Frankia alni 1 0 species 938 298654 Frankia inefficax species 0 1848 1 Catenulisporales 414714 1 1 4 order 0 2386 1 3 0 2385 family 48 414877 Catenulisporaceae 23 414878 Catenulispora 1 2 genus 0 2337 2314 0 species 1 Catenulispora acidiphila 304895 32 1 0 23213 order 128 85009 Propionibacteriales 1 13 0 6972 family Nocardioidaceae 184 85015 1 4 0 2801 genus 1839 109 Nocardioides 0 species 966 1 Nocardioides dokdonensis 450734 867 0 no rank 1 2615069 196162 Nocardioides sp. JS614 0 species 867 1 2045452 Nocardioides sp. 78 1 859 0 species 1 2 867 0 genus 116071 1 Micropruina 1 0 species 866 Micropruina glycogenica 75385 2040 20 Aeromicrobium 2 1 0 660 genus 2041 Aeromicrobium erythreum species 0 640 1 22 182639 Kribbella 0 genus 1390 2 1 1 0 species 1368 Kribbella flavida 182640 2044 13 Pimelobacter 2 1 0 genus 1070 Pimelobacter simplex 2045 0 1057 species 1 Propionibacteriaceae 31957 220 1 18 0 family 16113 0 2620 genus 1 203133 0 no rank 2620 1 2633994 1 species 0 2620 Propionimicrobium sp. Marseille-P3275 1871034 Tessaracoccus 40 72763 0 genus 5219 5 1 1 1347 0 no rank 2635419 Tessaracoccus sp. T2.5-30 1909732 1347 0 species 1 0 species 1247 1 399497 Tessaracoccus flavescens 1610493 Tessaracoccus flavus 0 species 1020 1 species 0 1565 1 1332264 Tessaracoccus aquimaris 2801844 0 genus 824 1 Pseudopropionibacterium propionicum 1750 0 species 824 1 genus 0 1765 1 2 Acidipropionibacterium 1912215 8 1748 Acidipropionibacterium acidipropionici 0 species 1757 1 876 0 genus 1 29404 1 species 0 876 29405 Microlunatus phosphovorus 0 genus 2372 4 1 Cutibacterium 1912216 9 0 species 714 1 Cutibacterium acnes 1747 Cutibacterium avidum 33010 1069 0 species 1 0 580 species 1 33011 Cutibacterium granulosum 97 1743 Propionibacterium 0 2217 genus 3 1 2608905 no rank 0 343 1 671223 Propionibacterium sp. oral taxon 193 1 0 species 343 0 species 1777 1 1744 Propionibacterium freudenreichii 5 0 class 919 84992 1 5 0 919 order 84993 24 Acidimicrobiales 2 0 134 family 84994 Acidimicrobium 53634 8 0 genus 134 2 1 0 species 126 1 Acidimicrobium ferrooxidans 53635 family 0 761 2 2448023 761 0 genus 1 2 Ilumatobacter 4 682522 species 0 757 1 Ilumatobacter coccineus 467094 6 1 1525 0 class Rubrobacteria 84995 1 26 84996 Rubrobacterales 1 5 1524 0 order 7 84997 Rubrobacteraceae 1498 0 family 1 4 1491 0 genus 3 1 Rubrobacter 39 42255 0 1055 species 1 Rubrobacter xylanophilus 49319 42256 Rubrobacter radiotolerans 1 0 397 species 68297 4 0 phylum 1870 4 1870 0 class 203486 4 1 0 1870 order Dictyoglomales 203487 3 1867 0 family 3 203488 13 1 Dictyoglomus genus 0 1867 3 1 674 0 species 1 14 Dictyoglomus thermophilum Dictyoglomus turgidum 513050 1 0 1192 species 1783257 0 clade 32707 91 11815 0 phylum 36 203682 Phycisphaerae 4 666505 0 class 1980 1 7 4 1 order 0 1061 11 666506 Phycisphaerales 1 3 1050 0 family Phycisphaeraceae 666507 22 genus 0 1028 2 1 666508 3 Phycisphaera 547188 Phycisphaera mikurensis species 0 1025 1 0 915 order 2 2483366 2483367 2 0 915 family 2483368 2 0 genus 915 1 0 species 467 1941349 Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerae bacterium L21-RPul-D3 1940790 1 448 0 species 54 203683 Planctomycetia 0 class 9286 1 25 11 1 4294 0 order Planctomycetales 137 112 Planctomycetaceae 126 21 0 4157 family 10 1 Fuerstia 1936111 7 1 2 genus 0 639 1 0 632 species 1891926 Fuerstia marisgermanicae genus 0 2581 3 1 Planctomyces 18 118 2648843 0 2563 no rank 2 1 813 0 species Planctomyces sp. SH-PL14 1632864 Planctomyces sp. SH-PL62 1636152 0 1750 species 1 1649490 1 Rubinisphaera genus 0 457 1 2 119 Rubinisphaera brasiliensis 456 0 species 1 1649480 4 Planctopirus 0 genus 459 1 2 120 Planctopirus limnophila 455 0 species 1 2691355 3 813 0 order 0 family 813 1 3 Gemmataceae 1 1914233 Gemmata 113 1 812 0 genus 1 2 2622970 1 811 0 no rank 1 0 species 811 Gemmata sp. SH-PL17 1630693 2691354 3 0 order 981 2691358 1 0 family 320 1676125 0 genus 320 1 1331910 Thermogutta terrifontis 1 species 0 320 2691357 2 family 0 661 123 1 genus 0 298 125 Pirellula staleyi 0 298 species 1 0 genus 363 1 265488 265606 Rhodopirellula baltica 1 0 species 363 2691356 7 0 3144 order 61 1763524 Isosphaeraceae 0 family 3144 7 1 1 2 0 genus 693 8 466152 Singulisphaera 466153 Singulisphaera acidiphila 1 685 0 species 1 2 1999 0 genus Paludisphaera 4 1763521 species 0 1995 1 1387353 Paludisphaera borealis 127 8 Isosphaera 0 391 genus 1 2 1 0 species 383 Isosphaera pallida 128 2517206 4 0 549 class 1127829 20 Candidatus Brocadiales 549 0 order 1 4 Candidatus Brocadiaceae 1127830 2 1 3 529 0 family 527 0 genus 1 2 Candidatus Kuenenia 380738 2 Candidatus Kuenenia stuttgartiensis 174633 1 525 0 species 704 0 phylum 5 134625 6 1921781 Kiritimatiellae 0 class 704 1 5 1921782 5 Kiritimatiellales 1 4 0 order 698 1 3 693 0 family Kiritimatiellaceae 1 1921783 1 2 genus 0 692 Kiritimatiella 48 1921784 species 0 644 1 1307763 Kiritimatiella glycovorans 0 4349 phylum 3 256845 1313211 43 Lentisphaeria 3 1 4349 0 class Victivallales 278082 500 4306 0 order 2 1 1 0 3806 no rank 1674876 1 species 0 3806 2094242 Victivallales bacterium CCUG 44730 1 27 12200 0 phylum Verrucomicrobia 74201 1 1 5 0 class 748 1 1955630 Methylacidiphilae 4 747 0 order 717963 Methylacidiphilaceae 3 717964 1 4 0 747 family 511745 1 Methylacidiphilum 3 1 0 744 genus 1 0 592 species 591154 Methylacidiphilum fumariolicum 511746 Methylacidiphilum infernorum 1 0 species 151 0 class 4052 1 6 26 203494 Verrucomicrobiae 1 5 0 4026 order 48461 13 Verrucomicrobiales 4013 0 family 4 1 1647988 54 Akkermansiaceae Akkermansia 239934 13 3 1 3959 0 genus 0 1443 species 1 Akkermansia glycaniphila 1679444 1 2503 0 species 239935 Akkermansia muciniphila 0 5055 class 1 11 42 414999 Opitutae order 0 4676 1 7 Opitutales 415000 115 66 134623 Opitutaceae 1 6 0 family 4561 178440 8 Opitutus 0 1170 genus 1 2 1 1162 0 species 107709 Opitutus terrae 1645 0 genus 1 2 2 1961799 Lacunisphaera species 0 1643 1 Lacunisphaera limnophila 1838286 1680 0 no rank 1 278955 Opitutaceae bacterium TAV5 794903 0 species 1680 1 0 337 order 1 3 2 415001 Puniceicoccales 415002 2 0 family 335 1 2 0 335 genus Coraliomargarita 442430 2 395922 Coraliomargarita akajimensis 1 0 333 species 2 class 0 85 134549 2 1 genus 0 85 Candidatus Xiphinematobacter 1 134550 no rank 0 84 1 2648876 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 1 84 0 species 2 0 2259 no rank 417295 1 0 species 1224 Verrucomicrobia bacterium IMCC26134 1637999 1 species 0 1035 Verrucomicrobia bacterium 2026799 204428 3639 0 phylum 20 7 204429 Chlamydiia 1 20 0 class 3639 1963360 1 Parachlamydiales 1128 0 order 1 5 92712 1 0 family 129 34093 genus 0 129 1 Simkania negevensis 83561 1 0 species 129 2 0 739 family 92713 83551 1 genus 0 534 Parachlamydia acanthamoebae 83552 534 0 species 1 282132 1 0 genus 205 0 species 205 1 Candidatus Protochlamydia naegleriophila 389348 92714 1 0 259 family 1 0 genus 259 71666 Waddlia chondrophila 71667 1 259 0 species Chlamydiales 3 51291 0 order 2504 1 14 Chlamydiaceae 8 809 13 1 0 family 2501 1113537 0 no rank 2493 12 12 1 2493 0 genus 810 5 Chlamydia 1 446 0 species Chlamydia gallinacea 1457153 Chlamydia muridarum 83560 1 0 148 species 83559 Chlamydia suis 0 species 129 1 Chlamydia caviae 83557 1 0 species 228 Chlamydia abortus 83555 1 0 species 173 0 251 species 1 Chlamydia avium 1457141 Chlamydia trachomatis 813 1 275 0 species Chlamydia psittaci 83554 162 0 species 1 Chlamydia pecorum 85991 1 0 146 species 1 0 species 286 Chlamydia felis 83556 species 0 244 1 Chlamydia pneumoniae 83558 2157 266 65128 0 superkingdom Euryarchaeota 20 28890 1 215 0 57061 phylum 17386 0 clade 40 2283794 1 21 9767 0 class 18 183925 Methanobacteria 2158 20 0 9749 order 0 family 362 1 2178 1 genus 0 362 2179 1 0 species 362 2180 Methanothermus fervidus 4 2159 Methanobacteriaceae 1 19 0 family 9387 1083 0 genus 1 2316 2317 Methanosphaera stadtmanae 1 0 1083 species genus 0 2281 7 2160 1 0 270 species Methanobacterium formicicum 2162 Methanobacterium lacus 877455 0 species 380 1 1 0 species 301 118062 Methanobacterium congolense 595 0 no rank 2 2627676 1 0 310 species Methanobacterium sp. MB1 1379702 1911685 Methanobacterium sp. MZ-A1 species 0 285 1 59277 Methanobacterium subterraneum 0 231 species 1 868131 Methanobacterium paludis 504 0 species 1 5638 0 genus 6 2172 0 species 1205 1 Methanobrevibacter olleyae 294671 2173 Methanobrevibacter smithii 1 species 0 1163 0 874 species 1 230361 Methanobrevibacter millerae 2638681 2 1578 0 no rank 1 0 species 920 Methanobrevibacter sp. YE315 1609968 0 species 658 1 224719 Methanobrevibacter sp. AbM4 species 0 818 1 Methanobrevibacter ruminantium 83816 145260 4 0 genus 381 Methanothermobacter wolfeii 145261 1 0 59 species 110 0 no rank 1 2631116 866790 Methanothermobacter sp. CaT2 110 0 species 1 Methanothermobacter thermautotrophicus 145262 1 0 species 61 145263 Methanothermobacter marburgensis 1 0 species 151 0 7619 class 1 19 Methanococci 183939 7 Methanococcales 3 2182 1 18 7612 0 order 9 0 family 3332 196117 Methanotorris 2 196119 0 genus 530 1 2 Methanotorris igneus 2189 1 0 species 528 1 7 0 genus 2802 Methanocaldococcus 1 196118 Methanocaldococcus fervens 83171 1 species 0 431 0 species 573 1 Methanocaldococcus infernus 67760 1 species 0 533 Methanocaldococcus vulcanius 73913 Methanocaldococcus jannaschii 2190 0 species 289 1 1 species 0 527 1301915 Methanocaldococcus bathoardescens 2641196 1 0 448 no rank 1 448 0 species 644281 Methanocaldococcus sp. FS406-22 1 8 4277 0 family 2183 1 Methanococcaceae 1 5 0 3629 genus Methanococcus 4 2184 42879 Methanococcus aeolicus 1 0 467 species 39152 Methanococcus maripaludis 1 2150 0 species Methanococcus vannielii 2187 1 0 species 332 2188 Methanococcus voltae 1 species 0 676 Methanothermococcus 155862 3 647 0 genus 2 1 0 species 644 1 155863 Methanothermococcus okinawensis 2290931 0 clade 28507 107 Methanomicrobia 56 224756 0 16460 class 49 1 17 1 order 0 3043 Methanomicrobiales 2191 11 0 893 family 1 6 Methanoregulaceae 4 1198451 1 3 672 0 genus Methanoregula 395331 1 358766 Methanoregula boonei 0 species 414 1 882104 Methanoregula formicica species 0 257 1 Methanosphaerula 475087 5 2 1 217 0 genus 475088 Methanosphaerula palustris 212 0 species 1 2 family 0 316 196137 2 1 316 0 genus Methanospirillum 2202 2 1 314 0 species 2203 Methanospirillum hungatei Methanomicrobiaceae 7 2194 6 1 1305 0 family 0 genus 302 1 230355 Methanolacinia petrolearia 54120 species 0 302 1 4 1 996 0 genus Methanoculleus 45989 1 1 0 no rank 251 2619537 0 251 species 1 86622 Methanoculleus sp. MAB1 83986 Methanoculleus bourgensis 1 534 0 species species 0 210 1 2198 Methanoculleus marisnigri 2 518 0 family 88404 2 1 genus 0 518 Methanocorpusculum 2 2192 83984 Methanocorpusculum labreanum 1 516 0 species 570264 7 Methanocellales 4 1 order 0 665 570265 4 Methanocellaceae 658 0 family 1 3 2 0 genus 654 570266 1175445 Methanocella arvoryzae 1 species 0 441 Methanocella conradii 1175444 0 species 213 1 0 12696 order 1 27 94695 14 Methanosarcinales Methanosaetaceae 2 143067 1 3 family 0 733 2222 0 genus 731 2 301375 Methanosaeta harundinacea 1 419 0 species 1 species 0 312 2223 Methanothrix soehngenii 0 family 11949 1 23 Methanosarcinaceae 2206 5 2 genus 0 612 2225 345 0 species 1 2226 Methanococcoides methylutens Methanococcoides burtonii 29291 1 0 species 267 2220 genus 0 278 1 420950 Methanolobus psychrophilus 278 0 species 1 Methanomethylovorans 101191 2 2 1 0 genus 399 Methanomethylovorans hollandica 101192 0 397 species 1 1 455 0 genus 2321 0 species 455 1 Methanohalobium evestigatum 2322 8961 0 genus 1 13 2207 9 Methanosarcina 1 0 species 593 Methanosarcina thermophila 2210 2644672 2138 0 no rank 4 Methanosarcina sp. WWM596 1434103 1 species 0 412 Methanosarcina sp. Kolksee 1434099 0 species 667 1 Methanosarcina sp. WH1 1434102 0 487 species 1 1434100 Methanosarcina sp. MTP4 572 0 species 1 2215 Methanosarcina vacuolata 1 644 0 species Methanosarcina horonobensis 418008 1 539 0 species Methanosarcina barkeri 2208 species 0 2283 1 Methanosarcina lacustris 170861 1 species 0 346 38027 Methanosarcina siciliae 0 species 586 1 2214 Methanosarcina acetivorans 1 645 0 species 1178 0 species 1 Methanosarcina mazei 2209 737 0 genus 1 196136 Methanosalsum zhilinae 39669 1 737 0 species 2175 502 0 genus 2 1 222 0 species Methanohalophilus halophilus 2177 Methanohalophilus mahii 2176 1 0 280 species 1 58 class 0 12047 183963 69 Halobacteria Halobacteriales 2235 110 26 1 0 order 4787 92 1963268 Haloarculaceae 0 2974 family 1 15 Halomicrobium 203135 5 340 0 genus 1 2 335 0 species 1 Halomicrobium mukohataei 57705 1 5 0 1148 genus Haloarcula 23 2237 0 no rank 291 1 2624677 species 0 291 1 1592728 Haloarcula sp. CBA1115 Haloarcula taiwanensis 1932004 1 0 201 species 1 0 species 379 Haloarcula marismortui 2238 1 0 254 species 51589 Haloarcula hispanica 63743 0 genus 498 2 Natronomonas moolapensis 416273 1 0 201 species 0 species 297 1 Natronomonas pharaonis 2257 0 523 genus 1 3 Halorhabdus 146825 24 Halorhabdus utahensis 146826 1 0 species 320 430914 Halorhabdus tiamatea 1 species 0 179 2 1 0 genus 373 1073987 11 Halorientalis 1 no rank 0 362 2648975 species 0 362 1 Halorientalis sp. IM1011 1932360 Halobacteriaceae 28 2236 family 0 1703 1 10 Halobacterium 8 2239 4 1 0 genus 922 2668073 1 323 0 no rank Halobacterium sp. DL1 751944 1 0 323 species species 0 276 1 2242 Halobacterium salinarum 1407499 Halobacterium hubeiense species 0 315 1 1 0 genus 206 1980514 1873524 Halodesulfurarchaeum formicicum 1 0 206 species 2 1 417 0 genus Halalkalicoccus 13 332246 1 0 404 species Halalkalicoccus jeotgali 413810 Halanaeroarchaeum 1656823 18 genus 0 130 1 2 0 species 112 1 Halanaeroarchaeum sulfurireducens 1604004 Natrialbales 27 1644060 1 16 0 order 3407 15 1 0 3380 family Natrialbaceae 62 1644061 1 genus 0 396 387342 387343 Halopiger xanaduensis 396 0 species 1 0 491 genus 1 29287 1 0 species 491 29288 Natronococcus occultus 1 0 genus 242 63742 13769 Natrialba magadii species 0 242 1 1 0 107 genus 2256 44930 Natronobacterium gregoryi 0 107 species 1 1 2 193 0 genus 1 353799 Halostagnicola 1 0 192 species Halostagnicola larsenii 353800 579 0 genus 1 3 88723 23 Natrinema 1 species 0 314 Natrinema pellirubrum 69525 2622230 0 no rank 242 1 406552 Natrinema sp. J7-2 242 0 species 1 1 0 279 genus 1269201 1 0 279 no rank 2621923 1333523 Salinarchaeum sp. Harcht-Bsk1 0 279 species 1 genus 0 426 1 203193 1 species 0 426 229731 Halobiforma lacisalsi 1 3 0 genus 605 121871 1 Haloterrigena 1 species 0 312 Haloterrigena daqingensis 588898 62320 Haloterrigena turkmenica species 0 292 1 Haloferacales 64 1644055 1 15 3784 0 order 2678336 1 0 no rank 345 halophilic archaeon DL31 756883 1 0 345 species 6 0 1465 family 1963271 0 272 genus 1 2 1209988 2 Halopenitus 0 270 species 1 Halopenitus persicus 1048396 1644057 0 genus 520 1 Salinigranum rubrum 755307 0 species 520 1 Halorubrum 53 56688 0 673 genus 3 1 0 species 329 1 29284 Halorubrum trapanicum 1 species 0 291 Halorubrum lacusprofundi 2247 0 1910 family 1 7 Haloferacaceae 6 1644056 60846 1 153 0 genus Halogeometricum borinquense 60847 1 species 0 153 2251 13 Haloferax 1 4 genus 0 1443 species 0 583 1 Haloferax volcanii 2246 Haloferax gibbonsii 35746 0 species 508 1 1 0 339 species 2252 Haloferax mediterranei 1 308 0 genus 293431 293091 Haloquadratum walsbyi 1 308 0 species Thermococci 2 183968 1 40 class 0 6589 5 2258 Thermococcales 1 39 6587 0 order 1 38 family 0 6582 Thermococcaceae 2259 19 Thermococcus 53 2263 0 4640 genus 1 29 1 species 0 144 Thermococcus guaymasensis 110164 Thermococcus barophilus 55802 1 314 0 species 1 species 0 85 Thermococcus chitonophagus 54262 Thermococcus thioreducens 277988 1 0 162 species 0 species 171 1 Thermococcus sibiricus 172049 1505907 Thermococcus eurythermalis 0 species 135 1 species 0 301 1 Thermococcus litoralis 2265 342948 Thermococcus onnurineus 1 86 0 species 1 117 0 species 195522 Thermococcus nautili 1 species 0 203 Thermococcus cleftensis 163003 1 0 species 84 49899 Thermococcus profundus 317 0 species 1 Thermococcus siculi 72803 94 0 species 1 Thermococcus pacificus 71998 0 233 species 1 582419 Thermococcus paralvinellae 187878 Thermococcus gammatolerans 0 93 species 1 1 174 0 species 187880 Thermococcus radiotolerans 311400 Thermococcus kodakarensis 0 129 species 1 54077 Thermococcus barossii 0 97 species 1 1 0 110 species Thermococcus gorgonarius 71997 1712654 Thermococcus piezophilus 1 0 38 species 135 0 species 1 Thermococcus peptonophilus 53952 6 no rank 0 1184 2627626 119 0 species 1 1674923 Thermococcus sp. 2319x1 species 0 159 1 Thermococcus sp. EXT12c 2016361 species 0 249 1 Thermococcus sp. 4557 1042877 species 0 182 1 2008440 Thermococcus sp. 5-4 379 0 species 1 Thermococcus sp. AM4 246969 species 0 96 1 Thermococcus sp. P6 122420 2264 Thermococcus celer 1 0 181 species 7 genus 0 1783 2260 Pyrococcus furiosus 2261 0 348 species 1 1 0 53 species Pyrococcus yayanosii 1008460 2 0 228 no rank 2629106 342949 Pyrococcus sp. NA2 1 0 species 173 Pyrococcus sp. ST04 1183377 1 55 0 species 1083 0 species 1 Pyrococcus horikoshii 53953 Pyrococcus abyssi 29292 0 species 37 1 1 species 0 34 Pyrococcus kukulkanii 1609559 83867 1 0 genus 140 Palaeococcus pacificus 971279 1 0 species 140 1 8 1340 0 class Archaeoglobi 183980 4 0 order 1336 7 2231 7 0 1336 family 2232 2233 0 791 genus 4 2234 Archaeoglobus fulgidus 0 species 177 1 Archaeoglobus veneficus 58290 1 0 species 280 0 species 277 1 1316941 Archaeoglobus sulfaticallidus 84156 Archaeoglobus profundus 1 57 0 species 54260 1 genus 0 112 Ferroglobus placidus 54261 1 0 112 species 0 433 genus 2 190818 1 species 0 228 113653 Geoglobus ahangari 0 species 205 1 565033 Geoglobus acetivorans 0 clade 3219 19 2283796 0 class 2818 1 17 183967 7 Thermoplasmata 2301 4 Thermoplasmatales 0 order 1336 1 10 1919231 1 0 no rank 377 1 species 0 377 1054217 Thermoplasmatales archaeon BRNA1 0 family 117 2 1747776 1 2 0 117 genus Cuniculiplasma 3 1747777 1 0 species 114 1673428 Cuniculiplasma divulgatum 46659 family 0 250 2 2302 0 genus 250 2 1 0 species 131 Thermoplasma acidophilum 2303 1 0 species 119 50339 Thermoplasma volcanium 1 0 142 family 46630 1 0 genus 142 46631 142 0 species 1 82076 Picrophilus torridus 90142 3 446 0 family 3 1 0 genus 446 Ferroplasma 1 74968 species 0 165 1 Ferroplasma acidiphilum 74969 280 0 species 1 Ferroplasma acidarmanus 97393 1057 0 order 1 5 5 1235850 Methanomassiliicoccales 1577788 0 509 family 2 1 0 genus 344 1080709 0 344 species 1 Candidatus Methanomassiliicoccus intestinalis 1406512 1 165 0 genus 1607807 1577791 Candidatus Methanoplasma termitum 0 165 species 1 543 0 family 2 2517203 0 genus 543 1 2 Candidatus Methanomethylophilus 1291539 18 1291540 Candidatus Methanomethylophilus alvus 1 525 0 species 1234666 1 418 0 no rank 1 0 418 species methanogenic archaeon ISO4-H5 1495144 1803510 401 0 clade 2 379546 401 0 genus 2 0 64 no rank 1 2633939 0 64 species 1 Aciduliprofundum sp. MAR08-339 673860 1 337 0 species Aciduliprofundum boonei 379547 1783275 50 0 clade 8004 51967 56 0 phylum 2 56 0 genus 1 2 498845 2 Candidatus Korarchaeum Candidatus Korarchaeum cryptofilum 498846 1 54 0 species 0 5651 phylum 38 28889 1 38 0 class 5651 Thermoprotei 19 183924 114380 12 0 order 664 3 family 0 117 2307 genus 0 30 1 54251 0 30 species 1 Pyrolobus fumarii 54252 2308 1 0 53 genus species 0 53 1 Pyrodictium delaneyi 1273541 54247 1 genus 0 34 54248 Hyperthermus butylicus 1 0 species 34 1 9 0 family 547 Desulfurococcaceae 2 2272 477695 genus 0 39 1 1200300 Thermogladius calderae 1 39 0 species 2 259 0 genus 2279 Staphylothermus marinus 2280 125 0 species 1 1 species 0 134 Staphylothermus hellenicus 84599 0 28 genus 1 54253 1 species 0 28 54254 Thermosphaera aggregans 54258 0 125 genus 2 species 0 17 1 54259 Ignicoccus islandicus Ignicoccus hospitalis 160233 1 108 0 species 0 genus 94 2 2273 39 0 species 1 2275 Desulfurococcus mucosus 1 55 0 species Desulfurococcus amylolyticus 94694 13 order 0 899 2266 114378 5 0 314 family 5 1 genus 0 314 Thermofilum 2 2268 0 species 108 1 Thermofilum carboxyditrophus 1483572 1 0 species 110 Thermofilum pendens 2269 1550241 Thermofilum uzonense 1 0 species 27 1 67 0 species Thermofilum adornatus 1365176 2267 1 Thermoproteaceae 0 585 family 1 8 0 190 genus 1 76886 190 0 species 1 76887 Caldivirga maquilingensis 164450 3 Vulcanisaeta 3 1 genus 0 219 Vulcanisaeta moutnovskia 985052 147 0 species 1 164451 Vulcanisaeta distributa 1 species 0 69 2 genus 0 138 2270 0 species 76 1 184117 Thermoproteus uzoniensis 0 62 species 1 Thermoproteus tenax 2271 2276 0 37 genus 1 1 37 0 species Pyrobaculum islandicum 2277 0 order 3867 1 9 3 2281 Sulfolobales 118883 8 0 3864 family 41980 2 genus 0 212 1006005 Metallosphaera cuprina 160 0 species 1 Metallosphaera sedula 43687 0 52 species 1 1 0 2082 genus 69655 1 2082 0 species Sulfolobus tokodaii 111955 0 genus 882 3 2284 Sulfolobus acidocaldarius 2285 1 0 75 species Sulfolobus islandicus 43080 1 0 568 species 0 no rank 239 1 2641160 0 239 species 1 1891280 Sulfolobus sp. A20 2100760 252 0 genus 1 Sulfolobus solfataricus 2287 1 252 0 species 12914 1 genus 0 436 Acidianus hospitalis 563177 species 0 436 1 202 0 order 3 871006 871007 2 family 0 77 2 1 77 0 genus 1 105850 Acidilobus 242703 Acidilobus saccharovorans 0 species 76 1 255472 0 125 family 1 200414 0 125 genus 1 1 125 0 species Caldisphaera lagunensis 200415 10 phylum 0 2297 651137 1643678 class 0 377 3 1033996 2 0 order 277 Nitrososphaeraceae 1 1033997 1 2 277 0 family 276 0 genus 1 497726 Nitrososphaera viennensis 1034015 0 276 species 1 1 0 100 order 1968909 1968910 0 family 100 1 100 0 genus 1 498374 1 0 species 100 2045011 Candidatus Nitrosocaldus islandicus 31932 0 order 1330 4 1330 0 family 4 1 338190 1 Nitrosopumilaceae 2 0 757 genus 338191 Candidatus Nitrosopumilus sediminis 1229909 1 0 species 412 0 345 species 1 1580092 Candidatus Nitrosopumilus adriaticus 1993653 572 0 genus 1 1 species 0 572 Candidatus Nitrosomarinus catalina 1898749 651142 no rank 0 590 3 genus 0 354 2 1825023 1603555 Candidatus Nitrosotenuis cloacae 1 174 0 species 180 0 species 1 1846278 Candidatus Nitrosotenuis sp. AQ6f 1593364 1 0 genus 236 Candidatus Nitrosopelagicus brevis 1410606 species 0 236 1 1783276 0 63 clade 1 1 phylum 0 63 1801631 2490204 1 0 63 genus 1920749 Candidatus Micrarchaeota archaeon Mia14 1 63 0 species