members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4715 13975 4182071 30 0 name 1 0 superkingdom 0 2157 61172 289 10665 65 0 1783275 clade phylum 0 51967 1 71 genus 0 498845 71 1 species 1 Candidatus Korarchaeum cryptofilum 71 498846 0 0 651137 18 Thaumarchaeota 5719 phylum 1 5 Nitrososphaeria 6 3073 0 1643678 1 1 class 0 1968909 2 1867 order family 2 1867 0 1968910 1867 2 Candidatus Nitrosocaldus 0 498374 1 3 genus 1 Candidatus Nitrosocaldus islandicus 1864 0 2045011 species order 1 3 0 1033996 3 Nitrososphaerales 1205 family 1202 2 0 1033997 genus 1 2 0 497726 1202 2 Nitrososphaera species 1 Nitrososphaera viennensis 1200 0 1034015 no rank 0 651142 5 842 0 1593364 626 2 Candidatus Nitrosopelagicus genus 1 10 616 Candidatus Nitrosopelagicus brevis 1 0 1410606 species 216 Candidatus Nitrosotenuis 3 0 1825023 6 1 genus species 1 Candidatus Nitrosotenuis sp. AQ6f 88 0 1846278 species 0 1603555 Candidatus Nitrosotenuis cloacae 1 122 order 1 7 0 31932 1799 6 Nitrosopumilales family 0 338190 5 1792 1135 Nitrosopumilus 3 0 338191 11 1 genus species 0 1580092 1 Candidatus Nitrosopumilus adriaticus 599 species 0 1229909 Candidatus Nitrosopumilus sediminis 1 525 genus 1 2 0 1993653 2 Candidatus Nitrosomarinus 657 0 1898749 1 Candidatus Nitrosomarinus catalina 655 species phylum 0 28889 46 4875 class 5 1 0 183924 4875 Thermoprotei 46 1 2 order 2641 13 Sulfolobales 0 2281 0 118883 2639 12 Sulfolobaceae family 1 16 0 69655 1 471 genus 471 Sulfolobus tokodaii 1 0 111955 species 219 Metallosphaera 3 0 41980 2 1 genus Metallosphaera sedula 1 103 43687 0 species 0 1006005 Metallosphaera cuprina 1 114 species 1 1 genus 313 2 Acidianus 12914 0 species 1 Acidianus hospitalis 312 0 563177 0 2100760 390 1 genus 0 2287 390 1 Sulfolobus solfataricus species 4 Sulfolobus 1230 0 2284 1 6 genus 1 362 0 2641160 no rank 362 1 Sulfolobus sp. A20 0 1891280 species 217 Sulfolobus acidocaldarius 1 0 2285 species species 1 Sulfolobus islandicus 645 0 43080 order 0 871006 3 477 44 2 0 871007 family 1 1 genus 44 Acidilobus 2 105850 0 0 242703 Acidilobus saccharovorans 1 43 species family 433 1 0 255472 genus 433 1 0 200414 species 0 200415 1 Caldisphaera lagunensis 433 1 2 order 16 Desulfurococcales 923 0 114380 family 1 16 0 2307 266 4 Pyrodictiaceae 0 54247 1 138 genus 1 Hyperthermus butylicus 138 0 54248 species 2308 0 1 27 genus species 0 1273541 1 Pyrodictium delaneyi 27 genus 1 85 0 54251 Pyrolobus fumarii 1 85 0 54252 species 0 2272 655 11 Desulfurococcaceae family 1 1 1 16 0 54253 genus species Thermosphaera aggregans 1 16 0 54254 2 96 0 2273 genus species 20 1 Desulfurococcus mucosus 2275 0 species 76 1 Desulfurococcus amylolyticus 0 94694 Thermogladius 2 41 0 477695 15 1 genus 1 Thermogladius calderae 26 0 1200300 species genus 1 15 0 2279 3 Staphylothermus 415 Staphylothermus hellenicus 1 146 0 84599 species species 254 Staphylothermus marinus 1 2280 0 0 54258 86 2 genus 0 54259 34 Ignicoccus islandicus 1 species 1 Ignicoccus hospitalis 52 0 160233 species order 1 2 0 2266 829 13 Thermoproteales 1 1 family 517 7 Thermoproteaceae 2267 0 1 112 0 76886 genus species 1 Caldivirga maquilingensis 112 0 76887 0 2270 140 2 genus species 0 184117 1 Thermoproteus uzoniensis 69 species 0 2271 Thermoproteus tenax 1 71 genus 2 184 0 164450 species 105 Vulcanisaeta moutnovskia 1 0 985052 0 164451 Vulcanisaeta distributa 1 79 species genus 0 2276 80 1 species Pyrobaculum islandicum 1 80 0 2277 family 0 114378 5 310 genus 15 1 0 2268 Thermofilum 5 310 1 Thermofilum adornatus 83 0 1365176 species Thermofilum carboxyditrophus 1 78 0 1483572 species 0 1550241 71 1 Thermofilum uzonense species 0 2269 63 Thermofilum pendens 1 species 55 1 0 1783276 clade phylum 55 1 0 1801631 1 55 0 2490204 genus 1 Candidatus Micrarchaeota archaeon Mia14 55 0 1920749 species 28890 0 50452 Euryarchaeota 223 phylum 4 1 class 10 731 0 183980 10 Archaeoglobales 731 0 2231 1 2 order 0 2232 Archaeoglobaceae 9 729 family 1 1 0 54260 2 Ferroglobus 141 genus 1 2 0 54261 1 Ferroglobus placidus 139 species genus 0 2233 445 4 species 1 Archaeoglobus profundus 100 0 84156 0 1316941 112 1 Archaeoglobus sulfaticallidus species species 0 2234 129 1 Archaeoglobus fulgidus species Archaeoglobus veneficus 1 104 0 58290 genus 2 142 0 190818 Geoglobus acetivorans 1 75 0 565033 species 67 1 Geoglobus ahangari 113653 0 species 106 28818 0 2290931 clade 0 183963 18406 57 Halobacteria class 1 69 order 57 1 0 1644060 Natrialbales 16 7676 family 1 30 0 1644061 7619 15 Natrialbaceae genus 0 29287 283 1 0 29288 283 1 Natronococcus occultus species 751 1 0 203193 genus 1 Halobiforma lacisalsi 751 0 229731 species 175 1 0 353799 genus 175 1 Halostagnicola larsenii 0 353800 species 390 Halopiger 2 0 387342 1 1 genus species 0 387343 389 Halopiger xanaduensis 1 918 2 121871 0 genus 539 1 Haloterrigena daqingensis 0 588898 species Haloterrigena turkmenica 1 379 62320 0 species 2256 0 1 243 genus species 0 44930 243 1 Natronobacterium gregoryi genus 0 1269201 223 1 no rank 0 2621923 1 223 species 223 1 Salinarchaeum sp. Harcht-Bsk1 0 1333523 1 1 genus Natrinema 3 480 0 88723 0 69525 275 Natrinema pellirubrum 1 species no rank 1 204 0 2622230 species 406552 0 1 Natrinema sp. J7-2 204 genus 1 8 0 63742 4126 2 Natrialba 0 13769 4118 1 Natrialba magadii species Haloferacales 17 7808 0 1644055 105 1 order family 1 24 0 1644056 6153 8 Haloferacaceae 1396 4 Haloferax 0 2251 1 19 genus 0 35746 603 Haloferax gibbonsii 1 species species 0 2246 573 Haloferax volcanii 1 species 0 2252 201 1 Haloferax mediterranei 14 1 genus Haloquadratum 2 4556 0 293431 0 293091 1 Haloquadratum walsbyi 4542 species 177 1 0 60846 genus 1 Halogeometricum borinquense 177 0 60847 species family 1 4 0 1963271 1293 7 Halorubraceae 1 2 genus 3 Halorubrum 498 0 56688 0 2247 206 1 Halorubrum lacusprofundi species species 0 29284 1 Halorubrum trapanicum 290 242 1 1209988 0 genus Halopenitus persicus 1 242 0 1048396 species 8 1 genus 549 Salinigranum 2 0 1644057 species 0 755307 541 1 Salinigranum rubrum no rank 257 1 0 2678336 0 756883 halophilic archaeon DL31 1 257 species 2853 23 Halobacteriales 0 2235 1 19 order family 8 1051 0 2236 685 4 Halobacterium 0 2239 1 6 genus 0 2242 Halobacterium salinarum 1 175 species species 0 1407499 228 Halobacterium hubeiense 1 no rank 1 276 0 2668073 0 751944 1 Halobacterium sp. DL1 276 species 1 92 0 1656823 genus species 0 1604004 92 1 Halanaeroarchaeum sulfurireducens 0 332246 Halalkalicoccus 2 189 genus 1 1 Halalkalicoccus jeotgali 1 188 0 413810 species 1980514 0 85 1 genus 0 1873524 85 1 Halodesulfurarchaeum formicicum species family 2 1 0 1963268 1783 Haloarculaceae 14 genus 10 1 0 2237 701 Haloarcula 5 0 2238 Haloarcula marismortui 1 181 species species 154 1 Haloarcula hispanica 0 51589 0 2624677 1 175 no rank species 1 Haloarcula sp. CBA1115 175 0 1592728 species 181 1 Haloarcula taiwanensis 0 1932004 0 203135 1 188 genus species 1 Halomicrobium mukohataei 188 0 57705 3 Natronomonas 407 0 63743 1 3 genus 246 1 Natronomonas moolapensis 0 416273 species species 0 2257 158 1 Natronomonas pharaonis genus 213 1 0 1073987 no rank 0 2648975 1 213 0 1932360 213 1 Halorientalis sp. IM1011 species 0 146825 272 3 Halorhabdus genus 1 2 Halorhabdus tiamatea 1 154 0 430914 species species 0 146826 116 Halorhabdus utahensis 1 1 14 class 49 Methanomicrobia 10412 224756 0 16 Methanomicrobiales 1153 0 2191 1 12 order 2 122 0 88404 family 2 Methanocorpusculum 122 0 2192 1 5 genus species Methanocorpusculum labreanum 1 117 0 83984 317 5 Methanoregulaceae 0 1198451 1 4 family 0 395331 2 222 genus 0 358766 121 Methanoregula boonei 1 species 0 882104 101 1 Methanoregula formicica species 1 1 genus Methanosphaerula 2 91 0 475087 90 Methanosphaerula palustris 1 0 475088 species 5 1 family Methanomicrobiaceae 6 559 0 2194 1 2 genus 2 Methanolacinia 121 0 230355 species 0 54120 119 1 Methanolacinia petrolearia 0 45989 3 433 genus species Methanoculleus bourgensis 1 161 0 83986 no rank 0 2619537 108 1 species 108 1 Methanoculleus sp. MAB1 0 86622 species 0 2198 Methanoculleus marisnigri 1 164 family 0 196137 2 143 1 4 genus 2 Methanospirillum 143 2202 0 2203 0 1 Methanospirillum hungatei 139 species 0 570264 349 3 Methanocellales order 1 3 346 2 0 570265 family 346 2 0 570266 genus species 0 1175445 245 1 Methanocella arvoryzae 101 1 Methanocella conradii 0 1175444 species order 1 21 0 94695 8896 29 Methanosarcinales Methanosarcinaceae 25 8546 0 2206 13 1 family 0 101191 Methanomethylovorans 2 164 genus 4 1 0 101192 1 Methanomethylovorans hollandica 160 species genus 1 5 0 2207 13 Methanosarcina 6495 species 1 Methanosarcina lacustris 440 0 170861 1 Methanosarcina barkeri 1479 2208 0 species no rank 2644672 0 4 1427 species 1 Methanosarcina sp. MTP4 534 0 1434100 233 1 Methanosarcina sp. WH1 0 1434102 species species 1 Methanosarcina sp. Kolksee 416 0 1434099 species 244 1 Methanosarcina sp. WWM596 0 1434103 Methanosarcina mazei 1 705 0 2209 species 493 Methanosarcina horonobensis 1 0 418008 species species 438 1 Methanosarcina vacuolata 0 2215 species 0 2214 Methanosarcina acetivorans 1 304 species 0 2210 302 1 Methanosarcina thermophila species 1 Methanosarcina siciliae 902 0 38027 genus 576 1 0 2321 1 Methanohalobium evestigatum 576 0 2322 species 143 Methanolobus 2 0 2220 1 1 genus species Methanolobus psychrophilus 1 142 0 420950 0 2175 455 Methanohalophilus 3 genus 1 1 species 0 2176 1 Methanohalophilus mahii 250 Methanohalophilus halophilus 1 204 0 2177 species genus 0 2225 435 2 species 0 29291 194 Methanococcoides burtonii 1 species 241 Methanococcoides methylutens 1 2226 0 genus 265 1 0 196136 0 39669 265 1 Methanosalsum zhilinae species family 1 1 0 143067 329 Methanosaetaceae 3 genus 0 2222 328 2 0 301375 148 Methanosaeta harundinacea 1 species species 0 2223 180 1 Methanothrix soehngenii 4073 40 Thermococci 0 183968 1 3 class order 0 2258 39 4070 0 2259 Thermococcaceae 39 4070 family 4 1 18 1 genus Thermococcus 29 3183 0 2263 0 582419 1 Thermococcus paralvinellae 198 species 2627626 0 6 415 no rank 47 Thermococcus sp. 5-4 1 0 2008440 species species 113 1 Thermococcus sp. 2319x1 0 1674923 species 0 122420 1 Thermococcus sp. P6 49 species 1 Thermococcus sp. EXT12c 47 0 2016361 1042877 0 81 Thermococcus sp. 4557 1 species 0 246969 78 Thermococcus sp. AM4 1 species species 64 Thermococcus gammatolerans 1 187878 0 species 1 Thermococcus piezophilus 49 0 1712654 Thermococcus guaymasensis 1 44 0 110164 species species 1 Thermococcus eurythermalis 44 1505907 0 species 0 55802 Thermococcus barophilus 1 203 Thermococcus onnurineus 1 49 0 342948 species species 0 72803 1 Thermococcus siculi 1176 1 Thermococcus sibiricus 164 0 172049 species species 0 49899 Thermococcus profundus 1 54 36 Thermococcus peptonophilus 1 0 53952 species species 89 Thermococcus chitonophagus 1 0 54262 54 1 Thermococcus nautili 0 195522 species 0 187880 55 1 Thermococcus radiotolerans species species 61 1 Thermococcus celer 0 2264 species Thermococcus pacificus 1 52 0 71998 species 0 163003 52 1 Thermococcus cleftensis species 59 1 Thermococcus thioreducens 0 277988 species Thermococcus barossii 1 41 0 54077 0 311400 47 Thermococcus kodakarensis 1 species Thermococcus gorgonarius 1 52 0 71997 species Thermococcus litoralis 1 107 0 2265 species 0 2260 790 Pyrococcus 8 genus 1 1 0 29292 Pyrococcus abyssi 1 114 species species 39 Pyrococcus yayanosii 1 0 1008460 2 274 0 2629106 no rank 0 1183377 149 Pyrococcus sp. ST04 1 species species 0 342949 Pyrococcus sp. NA2 1 125 180 Pyrococcus furiosus 1 0 2261 species 1 Pyrococcus horikoshii 98 0 53953 species species 0 1609559 84 Pyrococcus kukulkanii 1 genus 93 1 83867 0 93 Palaeococcus pacificus 1 0 971279 species clade 0 2283796 22 2302 clade 273 2 0 1803510 genus 2 273 0 379546 no rank 127 1 0 2633939 0 673860 1 Aciduliprofundum sp. MAR08-339 127 species species 0 379547 146 Aciduliprofundum boonei 1 0 183967 2029 20 Thermoplasmata class 1 4 711 6 0 1235850 order 588 4 Methanomassiliicoccaceae 0 1577788 1 2 family 0 1080709 2 Methanomassiliicoccus 513 genus 1 1 species Candidatus Methanomassiliicoccus intestinalis 1 512 0 1406512 1 73 1607807 0 genus 73 1 Candidatus Methanoplasma termitum 0 1577791 species family 123 2 0 2517203 Candidatus Methanomethylophilus 2 123 0 1291539 1 1 genus 0 1291540 122 1 Candidatus Methanomethylophilus alvus species no rank 0 1234666 82 1 1 methanogenic archaeon ISO4-H5 82 1495144 0 species order 12 1232 0 2301 family 10 1 0 1747776 367 Cuniculiplasmataceae 3 genus 1 5 0 1747777 2 Cuniculiplasma 357 species 0 1673428 352 Cuniculiplasma divulgatum 1 family 0 90142 373 3 373 3 Ferroplasma 74968 0 1 3 genus 205 1 Ferroplasma acidarmanus 0 97393 species 1 Ferroplasma acidiphilum 165 0 74969 species 2 Picrophilaceae 221 0 46630 1 1 family 220 1 0 46631 genus 220 1 Picrophilus torridus 0 82076 species no rank 1 75 0 1919231 species 0 1054217 75 Thermoplasmatales archaeon BRNA1 1 0 46659 3 Thermoplasmataceae 196 family 1 1 genus 2302 0 2 195 0 50339 1 Thermoplasma volcanium 130 species Thermoplasma acidophilum 1 65 2303 0 species clade 0 2283794 14524 44 7521 Methanococci 18 0 183939 11 1 class order 1 7 0 2182 17 Methanococcales 7510 family 4 1 0 2183 4552 Methanococcaceae 7 0 2184 5 Methanococcus 4155 genus 1 6 species 0 2187 1 Methanococcus vannielii 560 422 1 Methanococcus aeolicus 0 42879 species 961 Methanococcus voltae 1 0 2188 species Methanococcus maripaludis 1 2206 0 39152 species 0 155862 1 393 genus Methanothermococcus okinawensis 1 393 0 155863 species 0 196117 9 2951 family 196118 0 2596 Methanocaldococcus 7 genus 3 1 species 0 1301915 Methanocaldococcus bathoardescens 1 483 species 1 Methanocaldococcus fervens 408 83171 0 species 0 2190 1 Methanocaldococcus jannaschii 412 490 Methanocaldococcus vulcanius 1 0 73913 species species 67760 0 1 Methanocaldococcus infernus 381 no rank 1 419 0 2641196 species 419 1 Methanocaldococcus sp. FS406-22 0 644281 genus 1 1 196119 0 355 Methanotorris 2 species Methanotorris igneus 1 354 0 2189 7003 26 Methanobacteria 183925 0 1 13 class order 1 3 0 2158 25 Methanobacteriales 6990 family 0 2178 516 2 genus 6 1 0 2179 Methanothermus 2 516 510 Methanothermus fervidus 1 0 2180 species 9 1 family 6471 Methanobacteriaceae 22 0 2159 0 2316 1 646 genus 0 2317 646 1 Methanosphaera stadtmanae species genus 1 3 0 145260 262 5 Methanothermobacter species 0 145262 1 Methanothermobacter thermautotrophicus 63 species Methanothermobacter marburgensis 1 91 145263 0 1 Methanothermobacter wolfeii 46 145261 0 species 59 1 0 2631116 no rank species 59 1 Methanothermobacter sp. CaT2 0 866790 3663 7 Methanobrevibacter 0 2172 1 6 genus species Methanobrevibacter ruminantium 1 422 0 83816 0 230361 Methanobrevibacter millerae 1 681 species no rank 0 2638681 1081 2 species 0 224719 606 Methanobrevibacter sp. AbM4 1 species Methanobrevibacter sp. YE315 1 475 0 1609968 species Methanobrevibacter olleyae 1 831 0 294671 species 1 Methanobrevibacter smithii 642 2173 0 Methanobacterium 8 1891 2160 0 3 1 genus 0 59277 1 Methanobacterium subterraneum 213 species 0 877455 1 Methanobacterium lacus 408 species no rank 2 436 2627676 0 species 1911685 0 1 Methanobacterium sp. MZ-A1 209 species 227 1 Methanobacterium sp. MB1 0 1379702 species Methanobacterium formicicum 1 267 0 2162 species Methanobacterium paludis 1 321 0 868131 species 0 118062 243 1 Methanobacterium congolense 1 43 superkingdom 4395 Bacteria 4106924 0 2 3059 8 0 200940 phylum 3 1 class 3059 Thermodesulfobacteria 8 0 67799 order 1 10 0 188710 3056 7 Thermodesulfobacteriales 1 12 family 6 Thermodesulfobacteriaceae 3046 0 188711 0 444090 464 1 genus species 0 1653476 464 Caldimicrobium thiodismutans 1 0 1740 3 Thermodesulfobacterium 2205 genus 1 1 species 0 1741 1 Thermodesulfobacterium commune 601 Thermodesulfobacterium geofontis 1 1603 0 1295609 species 365 1 0 241192 genus 0 171695 365 Thermodesulfatator indicus 1 species 94 21705 0 1783257 clade 0 256845 3 426 phylum 426 3 Lentisphaeria 1313211 0 1 10 class order 1 3 0 278082 416 2 Victivallales 0 1674876 1 413 no rank Victivallales bacterium CCUG 44730 1 413 0 2094242 species 27 Verrucomicrobia 7347 0 74201 1 13 phylum 1 6 class 5 Verrucomicrobiae 557 0 203494 551 4 Verrucomicrobiales 0 48461 1 2 order family 0 1647988 3 549 239934 0 549 3 Akkermansia genus 1 12 species 282 1 Akkermansia glycaniphila 0 1679444 species 0 239935 Akkermansia muciniphila 1 255 784 5 0 1955630 class 2 1 order Methylacidiphilales 5 784 0 717963 1 1 family 4 Methylacidiphilaceae 782 0 717964 3 1 genus 781 Methylacidiphilum 3 0 511745 species 0 591154 490 Methylacidiphilum fumariolicum 1 species 288 1 Methylacidiphilum infernorum 0 511746 1 1 class 3 Spartobacteria 130 0 134549 134550 0 129 2 Candidatus Xiphinematobacter genus 1 3 0 2648876 126 1 no rank species 0 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 1 126 2 1105 0 417295 no rank species 0 2026799 643 1 Verrucomicrobia bacterium species 462 1 Verrucomicrobia bacterium IMCC26134 0 1637999 0 414999 4758 Opitutae 11 class 15 1 1 5 order 4 Puniceicoccales 2719 0 415001 family 1 5 0 415002 3 Puniceicoccaceae 2714 7 1 genus 2709 Coraliomargarita 2 442430 0 1 Coraliomargarita akajimensis 2702 395922 0 species 2024 6 Opitutales 0 415000 1 17 order 18 1 family Opitutaceae 5 2007 0 134623 0 1961799 1 599 genus species 599 1 Lacunisphaera limnophila 0 1838286 genus 1 1 0 178440 586 Opitutus 2 0 107709 Opitutus terrae 1 585 species 0 278955 1 804 no rank species Opitutaceae bacterium TAV5 1 804 0 794903 0 203682 8477 35 phylum 1318 Phycisphaerae 7 666505 0 8 1 class 1 16 order 4 Phycisphaerales 827 0 666506 1 6 family 811 3 Phycisphaeraceae 0 666507 0 666508 Phycisphaera 2 805 genus 4 1 0 547188 1 Phycisphaera mikurensis 801 species 2 483 0 2483366 order family 0 2483367 2 483 genus 0 2483368 2 483 species 0 1940790 1 Phycisphaerae bacterium L21-RPul-D3 193 0 1941349 290 1 Phycisphaerae bacterium ST-PulAB-D4 species Planctomycetia 25 5902 0 203683 20 1 class order 521 3 0 2691355 family 1 1 0 1914233 3 Gemmataceae 521 1 11 genus 520 2 Gemmata 0 113 no rank 0 2622970 1 509 species 0 1630693 1 Gemmata sp. SH-PL17 509 2748 Planctomycetales 10 0 112 81 1 order 126 0 Planctomycetaceae 9 2667 family 17 1 1 1 genus Fuerstia 2 411 0 1936111 1 Fuerstia marisgermanicae 410 1891926 0 species genus 326 1 1649480 0 species 0 120 326 Planctopirus limnophila 1 0 118 1544 3 Planctomyces genus 1 10 1534 2 0 2648843 no rank 0 1636152 1106 Planctomyces sp. SH-PL62 1 species 428 1 Planctomyces sp. SH-PL14 0 1632864 species 0 1649490 Rubinisphaera 2 369 genus 5 1 species 0 119 1 Rubinisphaera brasiliensis 364 0 2691356 1560 7 order 1 10 family 1560 7 Isosphaeraceae 0 1763524 Paludisphaera 2 510 0 1763521 1 1 genus species 509 Paludisphaera borealis 1 1387353 0 7 1 genus 540 Isosphaera 2 0 127 533 Isosphaera pallida 1 128 0 species 1 6 genus 2 Singulisphaera 500 0 466152 species 466153 0 1 Singulisphaera acidiphila 494 order 0 2691354 4 1053 family 3 859 0 2691357 0 123 420 1 genus 0 125 Pirellula staleyi 1 420 species 11 1 genus Rhodopirellula 2 439 0 265488 species 1 Rhodopirellula baltica 428 0 265606 family 1 194 2691358 0 genus 0 1676125 1 194 194 Thermogutta terrifontis 1 0 1331910 species class 3 1257 0 2517206 order 4 1 0 1127829 1257 Candidatus Brocadiales 3 1253 Candidatus Brocadiaceae 2 0 1127830 1 1 family 0 380738 1 1252 genus 0 174633 Candidatus Kuenenia stuttgartiensis 1 1252 species 134625 0 531 4 phylum 4 531 0 1921781 class 0 1921782 Kiritimatiellales 4 531 order 6 1 family 1 6 0 1921783 525 3 Kiritimatiellaceae 0 1921784 519 Kiritimatiella 2 genus 3 1 1 Kiritimatiella glycovorans 516 0 1307763 species 25 4924 0 204428 phylum 0 204429 25 Chlamydiia 4924 class 1 17 1321 10 Parachlamydiales 1963360 0 1 5 order family 1 1 0 92713 721 5 Parachlamydiaceae 2 Candidatus Protochlamydia 271 0 282132 1 2 genus species 0 389348 269 1 Candidatus Protochlamydia naegleriophila 1 1 genus 449 Parachlamydia 2 0 83551 species 1 Parachlamydia acanthamoebae 448 0 83552 family 1 1 0 92712 324 Simkaniaceae 3 323 Simkania 2 0 34093 3 1 genus species 320 1 Simkania negevensis 0 83561 family 1 271 0 92714 271 1 0 71666 genus 0 71667 1 Waddlia chondrophila 271 species 0 51291 3586 14 Chlamydiales order 1 9 1 3 family 13 Chlamydiaceae 3577 0 809 no rank 3574 12 1113537 0 genus 22 1 0 810 Chlamydia 12 3574 0 83558 711 Chlamydia pneumoniae 1 species Chlamydia abortus 1 233 0 83555 species 0 1457141 286 1 Chlamydia avium species species 1 Chlamydia gallinacea 290 0 1457153 species 0 813 271 Chlamydia trachomatis 1 0 85991 401 Chlamydia pecorum 1 species 0 83559 179 Chlamydia suis 1 species Chlamydia psittaci 1 360 0 83554 species species Chlamydia felis 1 255 0 83556 1 Chlamydia caviae 288 0 83557 species 0 83560 1 Chlamydia muridarum 278 species phylum 0 203691 27194 55 85 1 class 27194 Spirochaetia 55 0 203692 0 1643688 9 4156 order 9 Leptospiraceae 4156 0 170 1 34 family genus 10 1 0 171 3901 Leptospira 6 779 1 Leptospira borgpetersenii 0 174 species 418 1 Leptospira santarosai 0 28183 species 0 28452 1 Leptospira alstonii 400 species 1593 1 Leptospira interrogans 173 0 species species 701 1 Leptospira biflexa 0 172 genus 1 1 0 338321 221 2 Turneriella 0 29510 220 1 Turneriella parva species 0 136 16789 Spirochaetales 38 order 50 1 0 137 20 Spirochaetaceae 5509 family 1 41 1911556 0 1 302 genus Sediminispirochaeta smaragdinae 1 302 0 55206 species genus 12 1 0 157 Treponema 12 2995 species Treponema primitia 1 380 0 88058 1 Treponema azotonutricium 176 0 150829 species 1 Treponema putidum 361 0 221027 species species 0 409322 450 Treponema pedis 1 species 1 Treponema paraluiscuniculi 142 0 53435 species 1 Treponema caldarium 277 0 215591 0 160 86 1 Treponema pallidum species no rank 1 201 0 2638727 1 Treponema sp. OMZ 838 201 0 1539298 species species 205 1 Treponema brennaborense 0 81028 species 0 167 374 1 Treponema succinifaciens species 331 1 Treponema denticola 0 158 genus 2 507 146 0 0 154 1 Spirochaeta thermophila 333 species 174 1 Spirochaeta africana 0 46355 species 0 1616789 1072 1 genus 0 1307761 1 Salinispira pacifica 1072 species genus 3 592 0 399320 148 1 Sphaerochaeta globosa 0 1131703 species 1131707 0 170 1 Sphaerochaeta pleomorpha species 274 1 Sphaerochaeta coccoides 0 273376 species 0 1643685 11230 Borreliaceae 17 family 18 1 8 Borreliella 5069 0 64895 1 307 genus species 0 64897 Borreliella bissettii 1 620 species 0 1674146 675 1 Borrelia mayonii species 0 664662 549 Borreliella bavariensis 1 1 Borreliella burgdorferi 693 139 0 species 0 29519 1174 Borreliella garinii 1 species 460 1 Borreliella valaisiana 62088 0 species species 0 29518 1 Borreliella afzelii 591 1 133 genus 8 Borrelia 6143 0 138 0 47466 Borrelia miyamotoi 1 1317 species species Borrelia parkeri 1 585 0 141 species 142 0 599 Borrelia turicatae 1 species 0 140 671 1 Borrelia hermsii 1572 1 Borrelia duttonii 0 40834 species species 0 143 467 1 Borrelia anserina species 799 1 Borrelia recurrentis 0 44449 0 1643686 6164 7 Brachyspirales order 1 13 family 1 6 0 143786 6 Brachyspiraceae 6151 6145 Brachyspira 5 0 29521 22 1 genus species 1453 Brachyspira intermedia 1 0 84377 species 0 84378 1350 1 Brachyspira murdochii Brachyspira pilosicoli 1 1801 0 52584 species 0 159 1519 Brachyspira hyodysenteriae 1 species clade 1783270 0 368 307176 0 68336 356 304194 clade 21 4232 0 1090 phylum 0 191410 4232 21 Chlorobia class 1 15 1 30 order 4217 20 Chlorobiales 0 191411 21 1 family Chlorobiaceae 19 4187 0 191412 1 2 genus 476 2 Chloroherpeton 0 100715 0 100716 1 Chloroherpeton thalassium 474 species no rank 0 274493 7 2261 genus 0 1099 2 460 species 0 34090 326 1 Pelodictyon phaeoclathratiforme 0 1100 134 Pelodictyon luteolum 1 species 5 Chlorobium 1801 0 1091 1 53 genus 0 337090 Chlorobium chlorochromatii 1 362 species 1092 0 461 1 Chlorobium limicola species species 0 1096 1 Chlorobium phaeobacteroides 779 0 1094 146 Chlorobium phaeovibrioides 1 species 256319 0 567 4 Chlorobaculum genus 1 65 species 0 274539 Chlorobaculum parvum 1 191 species Chlorobaculum limnaeum 1 161 0 274537 species 0 1097 Chlorobaculum tepidum 1 150 5 Prosthecochloris 862 0 1101 1 50 genus 0 2632826 3 605 no rank species 0 1974213 220 1 Prosthecochloris sp. HL-130-GSB 161 Prosthecochloris sp. GSB1 1 0 281093 species 1 Prosthecochloris sp. CIB 2401 224 1868325 0 species species 207 1 Prosthecochloris aestuarii 1102 0 27 1 phylum Bacteroidetes 329 297562 0 976 0 117747 24 Sphingobacteriia 17080 class 1 19 30 1 order Sphingobacteriales 23 17061 0 200666 84566 0 17031 22 Sphingobacteriaceae family 1 46 1 3 genus 1240 2 Solitalea 0 929509 species 1 Solitalea canadensis 1237 0 995 no rank 1 2119 0 84568 2119 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1986952 species 11 1 genus 1276 Pseudopedobacter 2 1649482 0 species 0 151895 1265 1 Pseudopedobacter saltans 84567 0 Pedobacter 6 5463 genus 32 1 0 984 814 1 Pedobacter heparinus species 892 1 Pedobacter steynii 430522 0 species species 0 188932 1 Pedobacter cryoconitis 1349 0 2628915 1 1048 no rank species 0 1727164 1048 Pedobacter sp. PACM 27299 1 species 0 363852 1 Pedobacter ginsengisoli 1328 2418 4 Mucilaginibacter 0 423349 1 18 genus 774 Mucilaginibacter sp. BJC16-A31 1 0 1234841 species species 1048 1 Mucilaginibacter gotjawali 0 1550579 no rank 1 578 0 2617802 species 1300914 0 1 Mucilaginibacter sp. PAMC 26640 578 28453 0 4469 6 Sphingobacterium genus 1 32 no rank 3693 4 0 2609468 species 0 2003121 Sphingobacterium sp. G1-14 1 921 0 743722 1 Sphingobacterium sp. 21 774 species species 846 Sphingobacterium sp. B29 1 0 1933220 species 1 Sphingobacterium sp. ML3W 1152 1538644 0 species 1010 0 744 Sphingobacterium mizutaii 1 1498 6 Saprospiria 0 1937959 1 1 class 0 1936988 5 1497 order family 0 89374 2 512 2 Saprospira 512 0 1007 1 9 genus 0 1008 503 Saprospira grandis 1 species 0 1937961 985 Haliscomenobacteraceae 3 family 1 1 0 2349 2 Haliscomenobacter 984 genus 1 1 species 0 2350 Haliscomenobacter hydrossis 1 983 0 200643 68 Bacteroidia 19340 class 1 34 0 1970189 11 Marinilabiliales 4031 order 1 10 747 2 Salinivirgaceae 0 1970190 1 3 family 0 1970191 744 1 genus Salinivirga cyanobacteriivorans 1 744 1307839 0 species family 1 2 0 1471398 816 3 Prolixibacteraceae genus 1 5 0 1471399 814 2 Draconibacterium species Draconibacterium orientale 1 809 0 1168034 0 1573805 1515 2 Marinifilaceae family 1 2 0 2060722 1 1513 genus 1513 Marinifilaceae bacterium SPP2 1 0 1717717 species family 1 1 558415 0 Marinilabiliaceae 3 943 5 1 genus Alkalitalea 2 942 0 1193324 937 Alkalitalea saponilacus 1 0 889453 species 1 63 order 15275 56 Bacteroidales 0 171549 3 Paludibacteraceae 672 0 2005523 1 1 family genus 1 1 346096 0 671 Paludibacter 2 species 1 Paludibacter propionicigenes 670 0 185300 1 2 family 4 Porphyromonadaceae 618 0 171551 6 1 genus 616 Porphyromonas 3 0 836 species 0 837 412 Porphyromonas gingivalis 1 1 Porphyromonas asaccharolytica 198 0 28123 species 333046 0 5 3093 no rank genus 3 1472 909656 0 0 357276 Bacteroides dorei 1 442 species Bacteroides salanitronis 1 624 0 376805 species species 0 821 406 1 Bacteroides vulgatus genus 6 1 0 511434 1621 Candidatus Azobacteroides 2 species 1615 Candidatus Azobacteroides pseudotrichonymphae 1 0 511435 11 Bacteroidaceae 3707 0 815 1 15 family 10 Bacteroides 3692 816 0 1 28 genus 1 Bacteroides ovatus 478 0 28116 species species 0 817 Bacteroides fragilis 1 860 species 308 Bacteroides caccae 1 0 47678 species 0 290053 302 1 Bacteroides helcogenes species 0 28113 263 1 Bacteroides heparinolyticus 1 Bacteroides cellulosilyticus 502 0 246787 species 320 Bacteroides caecimuris 1 0 1796613 species 0 818 469 1 Bacteroides thetaiotaomicron species species 0 28119 Bacteroides zoogleoformans 1 162 1853231 0 2 469 family 1 4 genus 469 2 Odoribacter 0 283168 species 465 1 Odoribacter splanchnicus 0 28118 family 3 1 0 2005525 Tannerellaceae 7 1231 0 375288 767 Parabacteroides 3 genus 5 1 823 0 380 Parabacteroides distasonis 1 species 0 2649774 382 1 no rank species 0 2025876 Parabacteroides sp. CT06 1 382 195950 0 461 Tannerella 3 genus 2 1 0 28112 288 1 Tannerella forsythia species 0 2620507 1 171 no rank species 1 Tannerella sp. oral taxon HOT-286 171 712710 0 family 6 1 0 171552 3030 Prevotellaceae 11 genus 1 13 838 0 10 Prevotella 3024 species 0 76123 Prevotella enoeca 1 223 species 0 589436 1 Prevotella fusca 204 0 52227 232 1 Prevotella dentalis species 0 28131 910 1 Prevotella intermedia species Prevotella ruminicola 1 303 0 839 species 28129 0 1 Prevotella denticola 117 species 1 488 0 2638335 no rank species 0 652716 488 1 Prevotella sp. oral taxon 299 1 Prevotella jejuni 302 1177574 0 species species 232 1 Prevotella melaninogenica 28132 0 0 2005519 2 Barnesiellaceae 198 family 1 2 genus 0 397864 1 196 species 1 Barnesiella viscericola 196 397865 0 2 1 family Dysgonamonadaceae 6 1443 0 2005520 0 1784836 820 2 Fermentimonas genus 1 6 814 Fermentimonas caenicola 1 0 1562970 species genus 1 268 0 307628 Petrimonas mucosa 1 268 0 1642646 species 1 3 genus 2 Proteiniphilum 353 0 294702 1642647 0 1 Proteiniphilum saccharofermentans 350 species family 2 1 0 171550 Rikenellaceae 3 464 genus 1 223 0 1611681 species 0 1433126 223 Mucinivorans hirudinis 1 genus 239759 0 239 1 species 214856 0 239 1 Alistipes finegoldii no rank 0 185291 1 287 species 0 1400053 1 Bacteroidales bacterium CF 287 219408 147 Flavobacteriia 0 117743 1 137 class 1 231 order 219271 146 Flavobacteriales 200644 0 1283 2 0 1853230 family 1283 Fluviicola 2 0 332102 7 1 genus 1276 1 Fluviicola taffensis 0 191579 species family 22788 21 0 2762318 genus 1 1 0 28250 2 Ornithobacterium 932 species Ornithobacterium rhinotracheale 1 931 28251 0 no rank 0 2782232 11252 10 Chryseobacterium 9 10691 59732 0 79 1 genus 0 2593645 3 3763 no rank 0 1721091 1 Chryseobacterium sp. IHB B 17019 1108 species 0 2015076 1432 1 Chryseobacterium sp. T16E-39 species species 1223 1 Chryseobacterium sp. StRB126 0 878220 species 0 1324352 888 Chryseobacterium gallinarum 1 1 Chryseobacterium glaciei 2172 0 1685010 species species 0 253 Chryseobacterium indologenes 1 2165 species 558152 0 1 Chryseobacterium piperi 1254 0 1265445 Chryseobacterium camelliae 1 370 species genus 1 561 2782228 0 0 536441 561 Chryseobacterium taklimakanense 1 species 3 1 genus Riemerella 2 1903 0 34084 0 34085 1 Riemerella anatipestifer 1900 species genus 1 885 0 1013 species 0 1014 Weeksella virosa 1 885 62 1 genus Elizabethkingia 6 7816 0 308865 species 1 Elizabethkingia meningoseptica 1201 0 238 2431 Elizabethkingia anophelis 1 0 1117645 species Elizabethkingia miricola 1 1669 0 172045 species species 1319 1 Elizabethkingia genomosp. 3 0 1756149 1134 1 Elizabethkingia genomosp. 4 1756150 0 species family Cryomorphaceae 1 11 0 246874 family 1 3 0 39782 7872 10 Blattabacteriaceae 9 Blattabacterium 7869 0 34098 1 50 genus 1152 1 Blattabacterium cuenoti 0 1653831 species 1033 1 Blattabacterium punctulatus 0 164514 species 0 2647581 5634 6 no rank Blattabacterium sp. (Blatta orientalis) 1 830 0 367806 species species 0 1316444 1160 1 Blattabacterium sp. (Nauphoeta cinerea) species Blattabacterium sp. (Periplaneta americana) 1 839 0 367488 species Blattabacterium sp. (Blattella germanica) 1 865 0 624186 774 1 Blattabacterium sp. (Mastotermes darwiniensis) 0 39768 species species 0 1186051 1 Blattabacterium sp. (Blaberus giganteus) 1166 family 2 1242 0 1333713 2 Owenweeksia 1242 0 267986 1 16 genus species 0 253245 Owenweeksia hongkongensis 1 1226 3 2652 0 313602 no rank 2 Candidatus Sulcia 2185 0 336809 1 8 genus 0 336810 2177 Candidatus Sulcia muelleri 1 species genus 467 1 0 1940138 species Candidatus Walczuchella monophlebidarum 1 467 0 1415657 family 0 1755828 2 972 972 Ichthyobacterium 2 0 1755829 15 1 genus species 0 242600 1 Ichthyobacterium seriolicida 957 0 49546 104 Flavobacteriaceae 182220 family 1 681 0 83612 2 Psychroflexus 2259 genus 1 2 species 0 57029 2257 Psychroflexus torquis 1 0 178469 1615 1 genus Arenibacter algicola 1 1615 0 616991 species genus 1 17 0 225842 3 Formosa 8826 no rank 0 2644710 8809 2 species 5668 Formosa sp. Hel3_A1_48 1 0 1336795 species 1336794 0 3141 Formosa sp. Hel1_33_131 1 genus 132 1 0 76831 Myroides 5 4773 no rank 2 2237 0 2642485 0 1583100 Myroides sp. A21 1 1141 species 1096 Myroides sp. ZB35 1 0 1458492 species species 1213 Myroides profundi 1 0 480520 0 76832 1191 Myroides odoratimimus 1 species 1 4174 0 2700084 genus 4174 Lutibacter sp. LPB0138 1 0 1850246 species genus 1 44 0 104267 5 Tenacibaculum 12484 species 2476 Tenacibaculum dicentrarchi 1 0 669041 Tenacibaculum maritimum 1 2583 0 107401 species species 3349 Tenacibaculum todarodis 1 0 1850252 species 0 584609 4032 Tenacibaculum jejuense 1 genus 1 123 0 1016 15 Capnocytophaga 12164 species 1619 Capnocytophaga sputigena 1 0 1019 species 981 Capnocytophaga stomatis 1 0 1848904 species 1 Capnocytophaga haemolytica 452 0 45243 4551 6 0 2640652 no rank species 872 Capnocytophaga sp. oral taxon 878 1 1316596 0 0 1316593 647 1 Capnocytophaga sp. oral taxon 864 species 895 Capnocytophaga sp. H4358 1 0 1945658 species species 0 1945657 1 Capnocytophaga sp. H2931 822 species 739 1 Capnocytophaga sp. ChDC OS43 0 209053 species 576 1 Capnocytophaga sp. oral taxon 323 0 1705617 species 1294 1 Capnocytophaga cynodegmi 0 28189 1276 Capnocytophaga canimorsus 1 28188 0 species species 0 1018 1 Capnocytophaga ochracea 608 species 1 Capnocytophaga gingivalis 627 0 1017 species 0 327575 633 Capnocytophaga leadbetteri 1 5 Maribacter 8150 0 252356 1 66 genus 6792 3 0 2615042 no rank species 0 313603 1758 1 Maribacter sp. HTCC2170 0 1644130 2637 Maribacter sp. 1_2014MBL_MicDiv 1 species 1 Maribacter sp. T28 2397 0 1836467 species species 1292 Maribacter cobaltidurans 1 0 1178778 genus 1 985 112040 0 985 Zobellia galactanivorans 1 0 63186 species 1833 Aequorivita 2 0 153265 1 1 genus 1832 1 Aequorivita sublithincola 101385 0 species 0 1518147 2727 2 Wenyingzhuangia genus 1 1 2726 Wenyingzhuangia fucanilytica 1 0 1790137 species 1 46 genus 4 Cellulophaga 8845 0 104264 1 Cellulophaga lytica 3181 0 979 species species 76594 0 1 Cellulophaga baltica 2918 0 59600 2700 1 Cellulophaga algicola species 2329 1 0 393005 genus Tamlana sp. UJ94 1 2329 0 2069432 species Gramella 5 5638 0 292691 39 1 genus 0 411153 Gramella forsetii 1 1767 species 0 1913577 1415 1 Gramella sp. LPB0144 species 0 1486245 1 Gramella flava 1008 species species 0 2126553 1409 1 Gramella sp. SH35 1 48 genus 4 Dokdonia 6263 0 326319 species Dokdonia donghaensis 1 2373 0 326320 2 3842 2615033 0 no rank species 0 313590 Dokdonia sp. MED134 1 2098 species 0 983548 Dokdonia sp. 4H-3-7-5 1 1744 0 216431 3834 1 genus species 1 Croceibacter atlanticus 3834 0 313588 1 63 genus 20149 9 Flavobacterium 0 237 species 0 1763534 1410 Flavobacterium crassostreae 1 0 1492737 1 Flavobacterium gilvum 1917 species species 0 996 1 Flavobacterium columnare 3898 0 96345 2025 1 Flavobacterium psychrophilum species 4514 Flavobacterium johnsoniae 1 0 986 species 0 312277 Flavobacterium indicum 1 2511 species 1799 1 Flavobacterium commune 0 1306519 species species 1 Flavobacterium branchiophilum 2012 55197 0 genus 1056 1 0 1176327 0 2636237 1056 1 no rank species 0 2094025 1 Aureitalea sp. RR4-38 1056 0 1204360 1 2946 genus species 2946 Siansivirga zeaxanthinifaciens 1 0 762954 3601 Algibacter 2 0 261827 1 1 genus 1 Algibacter alginicilyticus 3600 0 1736674 species 0 286104 Winogradskyella 3 6512 genus 17 1 no rank 6495 2 0 2615021 0 1936080 2829 1 Winogradskyella sp. J14-2 species species 1 Winogradskyella sp. PG-2 3666 0 754409 genus 203 1 0 363408 Nonlabens 5 7075 0 2615035 2 3338 no rank 1 Nonlabens sp. MB-3u-79 1635 0 2058134 species 0 1476901 1703 Nonlabens sp. MIC269 1 species 0 328515 1736 Nonlabens dokdonensis 1 species species 0 319236 Nonlabens sediminis 1 1798 3806 2 Lutibacter 0 358023 1 17 genus species 0 1622118 1 Lutibacter profundi 3789 417127 0 1 2455 genus species 398743 0 1 Zunongwangia profunda 2455 18894 Polaribacter 6 0 52959 128 1 genus species 1 Polaribacter vadi 4249 0 1774273 10216 3 0 196858 no rank 0 1529069 1 Polaribacter sp. BM10 3483 species 2058137 0 Polaribacter sp. ALD11 1 3233 species species 3500 1 Polaribacter sp. MED152 0 313598 0 996801 4301 1 Polaribacter reichenbachii species 3 Muricauda 2148 0 111500 1 8 genus species 516051 0 Muricauda lutaonensis 1 733 species 0 111501 1 Muricauda ruestringensis 1407 3109 2 0 61432 no rank species 2579 Flavobacteriaceae bacterium UJ101 1 0 1150389 0 531844 530 Flavobacteriaceae bacterium 3519-10 1 species 1 2731 0 336276 genus 1 2731 0 2615019 no rank species 0 2058135 2731 Olleya sp. Bg11-27 1 genus 97 1 0 291183 Lacinutrix 4 10525 no rank 0 2647285 2 7113 1 Lacinutrix sp. Bg11-31 3560 2057808 0 species species 1 Lacinutrix sp. 5H-3-7-4 3553 0 983544 3315 1 Lacinutrix venerupis 0 1486034 species 1 1722 0 143222 genus 1 1722 0 2633436 no rank species 0 1729720 Salegentibacter sp. T436 1 1722 genus 1 7 0 1649495 2 Seonamhaeicola 3492 no rank 0 2622645 3485 1 0 1936081 3485 1 Seonamhaeicola sp. S2-3 species 415 1 0 252306 genus 0 252307 Robiginitalea biformata 1 415 species genus 2763 1 0 1209327 species 1803846 0 Flavivirga eckloniae 1 2763 genus 1 1241 0 389486 no rank 1 1241 2648869 0 species 1453352 0 1241 Sediminicola sp. YIK13 1 1272 Bacteroidetes Order II. Incertae sedis 7 0 1100069 11 1 order 10 1 family 1261 Rhodothermaceae 6 0 563843 0 146918 410 2 Salinibacter genus 1 1 species Salinibacter ruber 1 409 0 146919 1 465 0 1196022 no rank species 465 Rhodothermaceae bacterium RA 1 0 1779382 376 2 Rhodothermus 0 29548 1 11 genus 365 Rhodothermus marinus 1 0 29549 species 60 Cytophagia 33755 0 768503 1 41 class 33714 Cytophagales 59 768507 0 119 1 order 0 2762301 2 2038 family genus 1 14 0 869806 2 Marivirga 2038 species 0 1006 Marivirga tractuosa 1 2024 8 1 family 991 Amoebophilaceae 5 0 1501348 1 1 genus 333 2 Candidatus Cardinium 0 273135 0 2641185 1 332 no rank 332 1 Cardinium endosymbiont of Encarsia pergandiella 0 249402 species genus 1 8 0 281119 2 Candidatus Amoebophilus 650 0 281120 1 Candidatus Amoebophilus asiaticus 642 species 0 200667 8700 4 Flammeovirgaceae family 1 6 no rank 6339 1 340671 0 species 0 1257021 Flammeovirgaceae bacterium 311 1 6339 0 59739 2355 2 Flammeovirga genus 1 25 1 2330 0 2637820 no rank species 2330 Flammeovirga sp. MY04 1 0 1191459 family 0 1937968 2345 2 Bernardetia 2 2345 0 1937972 18 1 genus species 2327 1 Bernardetia litoralis 0 999 5537 Cyclobacteriaceae 10 563798 0 2 1 family 0 390846 2 Echinicola 638 genus 1 20 618 Echinicola vietnamensis 1 0 390884 species 12 1 genus 1421 Belliella 2 0 232244 0 232259 Belliella baltica 1 1409 species 6 1 genus Algoriphagus 2 871 0 246875 0 1727163 865 Algoriphagus sp. M8-2 1 species 68288 0 2605 3 Cyclobacterium genus 1 20 0 104 Cyclobacterium marinum 1 1201 species 0 320787 Cyclobacterium amurskyense 1 1384 species 0 1853234 1191 Persicobacteraceae 3 family 6 1 genus 2 1 59740 0 Persicobacter 2 1185 1 1183 0 2664020 no rank species 0 1085624 1 Persicobacter sp. JZB09 1183 16 Hymenobacteraceae 6405 0 1853232 1 16 family 1 29 genus 1952 4 Rufibacter 0 1379908 713 1 Rufibacter tibetensis 512763 0 species 2 1210 0 2639626 no rank 551 1 Rufibacter sp. DG15C 0 1379909 species Rufibacter sp. DG31D 1 659 0 1379910 species 0 323449 942 Pontibacter 3 genus 5 1 1 Pontibacter akesuensis 370 0 388950 species species 0 400092 567 Pontibacter korlensis 1 1 46 genus 3495 8 Hymenobacter 0 89966 no rank 0 2615202 2528 5 0 1356852 487 Hymenobacter sp. APR13 1 species species 0 1484116 761 1 Hymenobacter sp. PAMC 26554 species 261 Hymenobacter sp. DG25A 1 0 1385663 species 0 1385664 Hymenobacter sp. DG25B 1 302 species 1 Hymenobacter sp. PAMC 26628 717 0 1484118 species 410 Hymenobacter sedentarius 1 0 1411621 species 1 Hymenobacter swuensis 511 0 1446467 family 1 16 0 89373 16 Cytophagaceae 6388 1 11 genus 995 2 Cytophaga 0 978 species 1 Cytophaga hutchinsonii 984 0 985 genus 1 1496 0 105 species 0 106 1496 1 Runella slithyformis 4 1 genus Dyadobacter 2 553 0 120831 Dyadobacter fermentans 1 549 0 94254 species genus 35 1 107 0 2367 Spirosoma 6 species 0 1211326 563 1 Spirosoma aerolatum species 404 Spirosoma montaniterrae 1 0 1178516 579 1 Spirosoma sp. HA7 0 2057025 species 269 1 Spirosoma rigui 0 564064 species 0 1379870 517 1 Spirosoma radiotolerans species 0 319458 628 Leadbetterella 2 genus 1 1 species 627 Leadbetterella byssophila 1 0 316068 333 Fibrella 2 0 861914 8 1 genus 0 2620963 325 1 no rank Fibrella sp. ES10-3-2-2 1 325 0 1834519 species class 4 1 1853228 0 5182 Chitinophagia 16 Chitinophagales 15 5178 0 1853229 16 1 order family 42 1 0 563835 Chitinophagaceae 14 5162 8 1 genus 535 Filimonas 2 0 649460 477680 0 527 1 Filimonas lacunae species 860 Arachidicoccus 2 1769012 0 1 1 genus no rank 2636138 0 859 1 species 0 1850526 859 Arachidicoccus sp. BS20 1 11 1 genus 872 Niabella 3 0 379899 species 0 446683 1 Niabella soli 378 species 0 1176587 483 1 Niabella ginsenosidivorans genus 0 398041 1 886 species 1 Flavisolibacter tropicus 886 1492898 0 genus 1 5 0 354354 965 2 Niastella 0 354356 960 1 Niastella koreensis species 3 Chitinophaga 1002 0 79328 1 2 genus 522 Chitinophagaceae bacterium 13 1 2029983 0 species 478 Chitinophaga pinensis 1 0 79329 species 2400 6 0 1134404 phylum 14 1 class Ignavibacteria 6 2400 0 795747 2386 Ignavibacteriales 5 0 795748 7 1 order 1 4 family 3 Ignavibacteriaceae 1980 0 795749 1 7 genus 1976 2 Ignavibacterium 0 795750 1969 Ignavibacterium album 1 0 591197 species family 0 1334117 399 1 0 1134403 399 1 genus 1134405 0 399 Melioribacter roseus 1 species phylum 8 1659 0 142182 class 10 1 0 219685 1659 Gemmatimonadetes 8 order 1 16 0 219686 7 Gemmatimonadales 1649 family 1 4 0 219687 1633 6 Gemmatimonadaceae genus 1 2 0 173479 3 Gemmatimonas 704 species Gemmatimonas aurantiaca 1 373 0 173480 329 1 Gemmatimonas phototrophica 0 1379270 species 1 3 genus 2 Gemmatirosa 925 0 1706036 922 Gemmatirosa kalamazoonesis 1 0 861299 species 641 1 0 456828 phylum genus 1 641 0 456826 Candidatus Cloacimonas acidaminovorans 1 641 0 456827 species phylum 0 65842 682 3 682 3 0 204430 class 1 1 order 682 3 Fibrobacterales 218872 0 1 1 family 681 Fibrobacteraceae 2 0 204431 genus 680 1 0 832 0 833 680 Fibrobacter succinogenes 1 species phylum 1 3 74152 0 1768 9 Elusimicrobia 2 1 class Endomicrobia 5 936 0 447830 1 3 order 934 4 Endomicrobiales 0 1783344 0 1783343 3 Endomicrobiaceae 931 family 1 1 genus 2 930 0 1408194 Endomicrobium proavitum 1 457 0 1408281 species 0 1408204 Candidatus Endomicrobium trichonymphae 1 473 species 1 499 0 99260 no rank species 499 uncultured Termite group 1 bacterium 1 0 167965 0 641853 330 2 class 1 1 order 330 Elusimicrobiales 2 641854 0 0 641876 329 1 family genus 0 423604 1 329 species 0 423605 329 Elusimicrobium minutum 1 0 1783272 2073331 1651 clade no rank 2 207 0 1859062 genus 1 1 0 262406 Thermobaculum 2 207 species 0 166501 206 1 Thermobaculum terrenum 0 1239 683 Firmicutes 420132 phylum 1 136 class 5 1 526524 0 Erysipelotrichia 10 1805 9 Erysipelotrichales 1800 0 526525 1 9 order 0 128827 1791 8 Erysipelotrichaceae family 1 4 no rank 0 544447 1 269 species 269 Erysipelotrichaceae bacterium I46 1 0 1834207 genus 8 1 0 1647 752 Erysipelothrix 3 0 1648 417 1 Erysipelothrix rhusiopathiae species species Erysipelothrix larvae 1 327 0 1514105 genus 0 1729679 101 1 species 1 Faecalibaculum rodentium 101 0 1702221 genus 2 1 0 191303 Turicibacter 2 665 no rank 0 2638206 663 1 species 663 Turicibacter sp. H121 1 0 1712675 4 238 0 1676648 class 0 1676649 238 Limnochordales 4 order 3 1 1 1 family 235 Limnochordaceae 3 0 1676650 11 1 genus 234 Limnochorda 2 0 1676651 1 Limnochorda pilosa 223 1555112 0 species Clostridia 200 154938 0 186801 162 1 class order 1 3 0 485256 829 3 Natranaerobiales 826 2 Natranaerobiaceae 0 485255 1 5 family genus 1 821 375928 0 species Natranaerobius thermophilus 1 821 0 375929 order 291 1 0 186802 Clostridiales 147 128402 68 1 family Clostridiaceae 40 89586 0 31979 0 390805 2 Geosporobacter 859 genus 1 1 0 1424294 1 Geosporobacter ferrireducens 858 species 0 49082 Candidatus Arthromitus 4 3433 genus 37 1 no rank 0 2638829 3 3396 species 0 49118 1 Candidatus Arthromitus sp. SFB-mouse 1117 0 1508644 1129 Candidatus Arthromitus sp. SFB-mouse-NL 1 species species 0 1041504 1 Candidatus Arthromitus sp. SFB-rat-Yit 1150 genus 7 1 114627 0 Alkaliphilus 3 1881 species 0 208226 1207 Alkaliphilus metalliredigens 1 0 461876 1 Alkaliphilus oremlandii 667 species 0 1485 83345 Clostridium 30 genus 384 1 species 0 394958 2218 1 Clostridium taeniosporum species 0 29341 1 Clostridium argentinense 2019 3360 1 Clostridium butyricum 0 1492 species Clostridium bornimense 1 2239 0 1216932 species Clostridium novyi 1 1671 0 1542 species species Clostridium pasteurianum 1 4003 0 1501 2500 1 Clostridium carboxidivorans 0 217159 species 1968 Clostridium acetobutylicum 1 0 1488 species species Clostridium saccharoperbutylacetonicum 1 3428 0 36745 0 1520 4515 1 Clostridium beijerinckii species 1 Clostridium chauvoei 1958 0 46867 species species 18172 1 Clostridium botulinum 0 1491 species 2468 1 Clostridium kluyveri 0 1534 1883 Clostridium sporogenes 1 0 1509 species species 0 1494 1773 1 Clostridium cochlearium species Clostridium ljungdahlii 1 1661 0 1538 1 Clostridium estertheticum 2029 238834 0 species species 0 1502 4213 Clostridium perfringens 1 0 84022 1237 1 Clostridium aceticum species 0 84023 Clostridium autoethanogenum 1 1610 species no rank 2 854 0 2614128 0 1042156 Clostridium sp. SY8519 1 135 species 0 755731 1 Clostridium sp. BNL1100 719 species 1248 Clostridium formicaceticum 1 0 1497 species species 1868 Clostridium cellulovorans 1 1493 0 species 4094 Clostridium saccharobutylicum 1 0 169679 1519 0 1 Clostridium tyrobutyricum 1325 species 2306 Clostridium tetani 1 0 1513 species species 0 1548 2601 1 Clostridium scatologenes 1 Clostridium baratii 3740 0 1561 species 0 538999 1231 8 no rank genus 1392389 0 1 180 species 0 1297617 Intestinimonas butyriciproducens 1 180 family 1 1 0 539000 192 Clostridiales Family XVII. Incertae Sedis 2 genus 0 73918 1 191 species 0 73919 1 Thermaerobacter marianensis 191 1 1 family 612 4 Clostridiales Family XIII. Incertae Sedis 0 543314 genus 3 1 86331 0 312 Mogibacterium 2 0 114527 Mogibacterium diversum 1 309 species 299 1 [Eubacterium] sulci 0 143393 species 0 2717089 1 247 genus species 0 2086584 Mordavella sp. Marseille-P3756 1 247 0 186806 5 Eubacteriaceae 1298 family 1 2 2 Acetobacterium 610 0 33951 1 2 genus species Acetobacterium woodii 1 608 0 33952 1 4 genus 686 2 Eubacterium 1730 0 species 0 1736 682 1 Eubacterium limosum 0 68298 Syntrophomonadaceae 5 530 family 7 1 genus 1 1 0 862 Syntrophomonas 2 340 0 863 Syntrophomonas wolfei 1 339 species 183 Syntrophothermus 2 0 129001 1 1 genus 1 Syntrophothermus lipocalidus 182 0 86170 species Lachnospiraceae 23 11576 0 186803 18 1 family 5 1 genus Lachnoclostridium 4 1450 0 1506553 0 66219 1 Lachnoclostridium phytofermentans 1014 species Lachnoclostridium phocaeense 1 169 0 1871021 species 262 1 0 2608895 no rank species 262 1 Lachnoclostridium sp. YL32 0 1834196 0 572511 2 845 genus no rank 2648079 0 1 349 0 1796616 Blautia sp. YL58 1 349 species species 0 1322 1 Blautia hansenii 496 2 Herbinix 473 0 1663717 1 2 genus 0 1679721 471 1 Herbinix luporum species genus 1 345 0 2719313 species 0 208479 [Clostridium] bolteae 1 345 0 186928 2 585 no rank species 1 [Eubacterium] rectale 349 0 39491 0 712991 Lachnospiraceae bacterium oral taxon 500 1 236 species 1 353 0 2719231 genus species 0 84030 1 [Clostridium] saccharolyticum 353 656 1 0 28050 genus species 1 [Eubacterium] eligens 656 39485 0 1 6 genus 3202 2 Cellulosilyticum 698776 0 species 3196 1 Cellulosilyticum lentocellum 0 29360 0 841 174 1 genus 301301 0 Roseburia hominis 1 174 species Butyrivibrio 3 1319 0 830 11 1 genus 1 Butyrivibrio proteoclasticus 616 43305 0 species species 0 185008 692 1 Butyrivibrio hungatei 0 207244 1 633 genus species 0 649756 1 Anaerostipes hadrus 633 genus 0 2039240 403 1 species 28446 0 403 Anaerotignum propionicum 1 1 1120 0 2569097 genus species 1120 [Eubacterium] hallii 1 0 39488 133 2 0 990719 family 2 1 genus 133 Christensenella 2 990721 0 0 1805714 131 Christensenella massiliensis 1 species 2 1 family 165 Heliobacteriaceae 3 0 31984 3 1 genus Heliobacterium 2 163 0 2697 160 Heliobacterium modesticaldum 1 0 35701 species family 9 1 0 541000 Ruminococcaceae 8 1596 genus 0 253238 199 1 0 253239 199 Ethanoligenens harbinense 1 species 0 2305133 1 120 no rank 0 1572656 1 Ruminococcaceae bacterium CPB6 120 species genus 240 1 0 946234 species 0 292800 240 1 Flavonifractor plautii genus 1 212 0 216851 212 1 Faecalibacterium prausnitzii 0 853 species 1 300 0 552397 no rank species 1 [Clostridium] cellulosi 300 29343 0 516 2 0 1263 genus 0 1160721 Ruminococcus bicirculans 1 248 species 0 1264 268 1 Ruminococcus albus species family 11 4685 2304686 0 9 1 genus Ruminiclostridium 2 643 0 1508657 species [Clostridium] cellulolyticum 1 634 0 1521 0 2304693 495 1 genus species 84032 0 1 [Clostridium] thermosuccinogenes 495 no rank 0 2305130 120 1 species 120 1 Ruminiclostridium sp. KB18 0 1834198 genus 656 1 0 236752 species 656 1 Fastidiosipila sanguinis 0 236753 1 1 genus 2 Mageeibacillus 210 0 1637257 species Mageeibacillus indolicus 1 209 0 884684 0 2304691 332 1 genus 332 [Clostridium] stercorarium 1 0 1510 species 3 2229 0 2304692 genus 1677857 0 1 Herbivorax saccincola 896 species species Ruminiclostridium thermocellum 1 481 0 1515 species 288965 0 852 1 [Clostridium] clariflavum Symbiobacteriaceae 3 286 0 543349 1 1 family genus 1 2 2733 0 285 2 Symbiobacterium species 0 2734 1 Symbiobacterium thermophilum 283 0 186807 7965 Peptococcaceae 26 family 26 1 0 56112 Dehalobacter 4 745 genus 7 1 species 254 Dehalobacter restrictus 1 0 55583 no rank 0 2635733 484 2 species 0 1147129 1 Dehalobacter sp. DCA 245 0 1131462 239 Dehalobacter sp. CF 1 species 0 51196 1 245 genus species 0 51197 245 1 Syntrophobotulus glycolicus genus 0 2282740 1 550 0 102134 550 Desulfotomaculum gibsoniae 1 species 1 520 51514 0 genus 0 51515 520 Dehalobacterium formicoaceticum 1 species genus 4 1 0 79206 Desulfosporosinus 4 1812 species 0 885581 707 Desulfosporosinus acidiphilus 1 species 0 1563 Desulfosporosinus orientis 1 535 0 79209 566 1 Desulfosporosinus meridiei species genus 10 1 0 36853 Desulfitobacterium 5 1598 0 233055 1 Desulfitobacterium dichloroeliminans 417 species species 362 1 Desulfitobacterium dehalogenans 0 36854 0 49338 Desulfitobacterium hafniense 1 427 species species 0 142877 382 1 Desulfitobacterium metallireducens genus 12 1 0 1562 1500 Desulfotomaculum 5 0 1833852 1 Desulfotomaculum ferrireducens 287 species 0 59610 586 Desulfotomaculum reducens 1 species species 0 1565 343 Desulfotomaculum nigrificans 1 0 1564 1 Desulfotomaculum ruminis 272 species genus 1 485 0 2282742 species 0 58138 485 Desulfotomaculum acetoxidans 1 genus 278993 0 302 1 0 863643 1 Thermincola potens 302 species 1 4 genus 2 Candidatus Desulforudis 182 0 471826 Candidatus Desulforudis audaxviator 1 178 0 471827 species family 1 13 0 186804 8825 11 Peptostreptococcaceae 300 1 0 1481960 genus 0 1731 Peptoclostridium acidaminophilum 1 300 species no rank 672 1 1411023 0 0 2081703 Peptostreptococcaceae bacterium oral taxon 929 1 672 species genus 1 1 0 1849828 1908 2 Paeniclostridium species 0 1505 1907 1 Paeniclostridium sordellii 0 44259 577 2 Filifactor genus 1 2 species Filifactor alocis 1 575 0 143361 0 1870884 Clostridioides 2 4154 genus 2 1 species Clostridioides difficile 1 4152 0 1496 0 186831 1201 Acetoanaerobium 2 genus 7 1 species 1194 1 Acetoanaerobium sticklandii 1511 0 216572 0 1 235 family 0 459786 1 235 genus species 1 Oscillibacter valericigenes 235 0 351091 0 2770089 2 742 order family 170 1 0 2770093 0 291988 1 170 genus Thermosediminibacter oceani 1 170 0 291990 species 0 2770092 572 1 family 572 1 0 499228 genus species Tepidanaerobacter acetatoxydans 1 572 0 499229 0 68295 18630 Thermoanaerobacterales 37 order 22 1 1 8 family 8607 13 Thermoanaerobacterales Family III. Incertae Sedis 0 543371 0 28895 Thermoanaerobacterium 3 2292 genus 2 1 1 Thermoanaerobacterium thermosaccharolyticum 1453 0 1517 species species 1 Thermoanaerobacterium xylanolyticum 837 29329 0 0 44000 6307 Caldicellulosiruptor 9 genus 127 1 species 0 44001 1 Caldicellulosiruptor saccharolyticus 773 0 52765 1 Caldicellulosiruptor kristjanssonii 673 species 775 Caldicellulosiruptor hydrothermalis 1 0 413888 species species 0 31899 1 Caldicellulosiruptor bescii 829 species 655 1 Caldicellulosiruptor lactoaceticus 0 52766 species 0 717609 1 Caldicellulosiruptor obsidiansis 728 0 55205 Caldicellulosiruptor owensensis 1 809 species species 413889 0 938 Caldicellulosiruptor kronotskyensis 1 227387 0 904 3 Thermodesulfobiaceae family 1 1 genus 1 1 0 227388 2 Thermodesulfobium 903 species 0 184064 902 Thermodesulfobium narugense 1 0 186814 18 Thermoanaerobacteraceae 8885 family 1 13 genus 334 1 0 1754 7426 Thermoanaerobacter 9 950 1 Thermoanaerobacter wiegelii 46354 0 species species 0 583357 Thermoanaerobacter mathranii 1 886 species 0 496866 873 Thermoanaerobacter pseudethanolicus 1 873 Thermoanaerobacter brockii 1 0 29323 species species 0 108150 943 Thermoanaerobacter italicus 1 species 0 2325 832 Thermoanaerobacter kivui 1 no rank 2 1735 0 2636821 833 1 Thermoanaerobacter sp. X514 399726 0 species 0 573062 1 Thermoanaerobacter sp. X513 902 species 0 129957 2 Carboxydothermus 387 genus 1 1 386 1 Carboxydothermus hydrogenoformans 0 129958 species 249529 0 Caldanaerobacter 2 628 genus 3 1 species 0 911092 Caldanaerobacter subterraneus 1 625 no rank 282 3 0 42857 1 1 genus 172 Moorella 2 0 44260 Moorella thermoacetica 1 171 1525 0 species genus 0 42837 1 110 species 110 1 Ammonifex degensii 42838 0 genus 140458 0 1 149 species 0 85874 149 1 Thermacetogenium phaeum 0 543372 212 2 Thermoanaerobacterales Family IV. Incertae Sedis family 1 1 genus 211 1 0 252965 species 0 252966 211 1 Mahella australiensis order 10 1 0 53433 6173 Halanaerobiales 10 family 21 1 0 972 4073 Halanaerobiaceae 6 0 32636 635 Halothermothrix 2 genus 19 1 0 31909 1 Halothermothrix orenii 616 species 1 8 genus 3 Halanaerobium 3417 0 2330 Halanaerobium hydrogeniformans 1 1487 0 656519 species species 1 Halanaerobium praevalens 1922 0 2331 0 53434 2090 Halobacteroidaceae 3 family 10 1 0 28186 759 1 genus species 759 1 Acetohalobium arabaticum 0 28187 1 1321 0 42417 genus 0 42422 1 Halobacteroides halobius 1321 species 1 84 0 33974 no rank genus 84 1 0 1930845 species Ndongobacter massiliensis 1 84 0 1871025 0 84086 1148 1 no rank species 243899 0 1148 endosymbiont 'TC1' of Trimyema compressum 1 5849 16 Tissierellia 0 1737404 1 16 class 20 1 order 5314 Tissierellales 13 0 1737405 0 1570339 10 Peptoniphilaceae 4046 family 1 14 0 543311 1 1292 genus 1292 Parvimonas micra 1 0 33033 species genus 5 1 0 165779 Anaerococcus 3 1159 0 1870984 637 Anaerococcus mediterraneensis 1 species species 0 33034 Anaerococcus prevotii 1 517 genus 2 1 0 162289 533 Peptoniphilus 2 no rank 1 531 0 2637196 species 0 1912856 Peptoniphilus sp. ING2-D1G 1 531 0 1161127 1 215 genus species 1852373 0 215 1 Murdochiella vaginalis 833 2 Finegoldia 0 150022 1 1 genus species 832 Finegoldia magna 1 0 1260 Gottschalkiaceae 2 1248 0 2042895 3 1 family genus 1 1245 0 1505664 species 1 Gottschalkia acidurici 1245 0 1556 no rank 0 1737407 519 2 0 1582879 Ezakiella 2 519 genus 3 1 species 0 1852374 Ezakiella massiliensis 1 516 class 1 219 91061 0 422 Bacilli 250070 418 1 order 174320 Bacillales 257 0 1385 1 115 family 90222 116 Bacillaceae 0 186817 genus 2 1833 0 2675229 1371 Bacillus simplex 1 0 1478 species Bacillus muralis 1 462 0 264697 species 129337 0 4007 15 Geobacillus genus 1 126 131 Geobacillus genomosp. 3 1 0 1921421 species species 0 129338 186 1 Geobacillus subterraneus no rank 1720 6 0 2642459 species 0 544556 81 1 Geobacillus sp. Y412MC61 0 550542 78 Geobacillus sp. Y412MC52 1 species 101 Geobacillus sp. GHH01 1 0 1233873 species species Geobacillus sp. WCH70 1 665 0 471223 species 452 Geobacillus sp. Y4.1MC1 1 0 581103 species 0 691437 343 Geobacillus sp. C56-T3 1 0 1505648 4 1163 species group species 0 1462 239 Geobacillus kaustophilus 1 species 33941 0 1 Geobacillus thermoleovorans 547 240 Geobacillus thermocatenulatus 1 0 33938 species 0 169283 1 Geobacillus lituanicus 137 species 0 1422 Geobacillus stearothermophilus 1 345 species Geobacillus thermodenitrificans 1 336 0 33940 species 0 29331 2 Amphibacillus 719 genus 1 14 Amphibacillus xylanus 1 705 0 1449 species 530 1 0 1906945 genus species 1426 0 1 Parageobacillus thermoglucosidasius 530 0 175304 418 1 genus species 1472767 0 418 Lentibacillus amyloliquefaciens 1 0 459532 334 1 genus species Terribacillus aidingensis 1 334 586416 0 0 84406 5278 Virgibacillus 7 genus 19 1 0 1473 1017 1 Virgibacillus pantothenticus species species 0 2017483 1 Virgibacillus phasianinus 736 species 871 1 Virgibacillus necropolis 0 163877 806 Virgibacillus halodenitrificans 1 1482 0 species 2620237 0 2 1829 no rank 0 1911587 Virgibacillus sp. 6R 1 979 species 1 Virgibacillus sp. SK37 850 0 403957 species 0 45667 2 813 genus 0 1570 1 Halobacillus halophilus 433 species 380 Halobacillus mangrovi 1 402384 0 species 6 Anoxybacillus 3434 0 150247 1 14 genus 2 1346 0 2639704 no rank 0 1490052 1 Anoxybacillus sp. B2M1 668 species 0 1490057 1 Anoxybacillus sp. B7M1 678 species species 0 198467 557 Anoxybacillus gonensis 1 species 555 Anoxybacillus amylolyticus 1 0 294699 species 0 33934 962 1 Anoxybacillus flavithermus 4935 5 Lysinibacillus 0 400634 1 21 genus species 1 Lysinibacillus sphaericus 2449 0 1421 species 0 28031 1 Lysinibacillus fusiformis 766 species 1145276 0 Lysinibacillus varians 1 823 no rank 1 876 0 2636778 0 2072025 1 Lysinibacillus sp. YS11 876 species 2 1745 2675230 0 genus species 0 665099 1 Bacillus oceanisediminis 648 species 1097 Bacillus kochii 1 0 859143 351195 0 1 244 genus 1 Salimicrobium jeotgali 244 0 1230341 species genus 1 1 0 1329200 1112 3 Fictibacillus 255247 0 523 1 Fictibacillus arsenicus species species Fictibacillus phosphorivorans 1 588 0 1221500 genus 2 1 0 182709 1781 Oceanobacillus 2 1779 Oceanobacillus iheyensis 1 0 182710 species genus 1 2 0 1055323 2 Aeribacillus 651 0 33936 1 Aeribacillus pallidus 649 species 1 1090 genus 58604 58 Bacillus 0 1386 2918 Bacillus megaterium 1 0 1404 species species Bacillus flexus 1 1090 0 86664 species 561879 0 1 Bacillus safensis 1064 541 Bacillus horikoshii 1 0 79883 species 0 1408 1860 1 Bacillus pumilus species no rank 5207 19 0 185979 1 Bacillus sp. SJ-10 109 563169 0 species species 0 1827146 1 Bacillus sp. IHB B 7164 691 1 Bacillus sp. LM 4-2 107 0 1628753 species 0 1774743 146 Bacillus sp. SDLI1 1 species species 0 666686 973 1 Bacillus sp. 1NLA3E 186 1 Bacillus sp. MD-5 0 2009331 species 107 Bacillus sp. YP1 1 0 1574141 species 229 Bacillus sp. H15-1 1 0 1856406 species 0 2049935 Bacillus sp. Lzh-5 1 79 species species 121 Bacillus sp. Pc3 1 0 1446792 species 227 1 Bacillus sp. 1s-1 0 2026248 species 0 756828 507 Bacillus sp. WP8 1 species 1837130 0 278 Bacillus sp. FJAT-14266 1 120 1 Bacillus sp. (in: Bacteria) 0 1409 species 332 1 Bacillus sp. OxB-1 0 98228 species species 1 Bacillus sp. 275 120 0 1941347 0 1565991 Bacillus sp. X1(2014) 1 665 species 160 1 Bacillus sp. JS 0 1127744 species species 0 1570330 50 1 Bacillus sp. BH072 0 1664069 539 Bacillus glycinifermentans 1 species 1 Bacillus cohnii 1254 0 33932 species species group 0 1792192 507 1 species 0 293387 Bacillus altitudinis 1 507 species group 0 653685 6571 9 0 119858 319 1 Bacillus sonorensis species species 0 1452 748 Bacillus atrophaeus 1 0 1938374 3 1837 species subgroup species 849 Bacillus velezensis 1 0 492670 species 0 1390 1 Bacillus amyloliquefaciens 844 144 1 Bacillus siamensis 0 659243 species species Bacillus paralicheniformis 1 334 0 1648923 species Bacillus vallismortis 1 60 0 72361 2732 1 Bacillus subtilis 1423 0 species species Bacillus licheniformis 1 541 0 1402 species group 10 28613 86661 0 8825 Bacillus thuringiensis 1 0 1428 species 0 658666 1 Bacillus bombysepticus 807 species species Bacillus anthracis 1 1338 0 1392 species 790 1 Bacillus cytotoxicus 0 580165 species 0 155322 720 1 Bacillus toyonensis species 10161 Bacillus cereus 1 1396 0 3 2184 0 2750818 no rank species 0 2053832 628 Bacillus sp. HBCD-sjtu 1 species 1839798 0 Bacillus sp. FDAARGOS_235 1 950 species 1892404 0 606 Bacillus sp. ABP14 1 species 3788 1 Bacillus mycoides 0 1405 1 Bacillus gibsonii 115 79881 0 species 0 632773 234 1 Bacillus beveridgei species Bacillus infantis 1 348 0 324767 species 715 Bacillus aryabhattai 1 0 412384 species species 1302 Bacillus endophyticus 1 0 135735 species 1 Bacillus weihaiensis 1099 0 1547283 0 1471 Bacillus methanolicus 1 961 species 0 1178537 1 Bacillus xiamenensis 402 species species 1413 0 1 Bacillus cellulosilyticus 1105 0 1479 444 1 Bacillus smithii species 0 1398 625 1 Bacillus coagulans species genus 5 3669 2675234 0 species 1112 Bacillus krulwichiae 1 0 199441 0 79885 Bacillus pseudofirmus 1 761 species species Bacillus clausii 1 763 0 79880 679 1 Bacillus lehensis 0 300825 species species 354 Bacillus halodurans 1 0 86665 31 1 family 27366 Paenibacillaceae 44 186822 0 12 1 genus Brevibacillus 4 2403 55080 0 species 0 1465 1344 1 Brevibacillus laterosporus 0 1393 1 Brevibacillus brevis 659 species 0 54913 388 1 Brevibacillus formosus species no rank 676 2 0 85151 0 55079 2 676 genus no rank 1 331 2642329 0 species 331 Aneurinibacillus sp. XH2 1 0 1450761 0 1500254 345 Aneurinibacillus soli 1 species 76632 0 264 1 genus 264 1 Thermobacillus composti 0 377615 species 44249 0 23992 Paenibacillus 36 genus 108 1 species Paenibacillus ihbetae 1 334 0 1870820 species 0 414771 1608 1 Paenibacillus donghaensis Paenibacillus terrae 1 382 0 159743 species 0 59893 Paenibacillus peoriae 1 639 species 8181 13 185978 0 no rank 0 1536771 390 Paenibacillus sp. FSL R5-0912 1 species species Paenibacillus sp. FSL R7-0331 1 338 0 1536773 0 1695218 262 1 Paenibacillus sp. 32O-W species 662 Paenibacillus sp. BIHB4019 1 0 1870819 species Paenibacillus sp. FSL P4-0081 1 966 0 1536769 species 387 1 Paenibacillus sp. lzh-N1 0 2069255 species species Paenibacillus sp. FSL R5-0345 1 1430 0 1536770 0 481743 257 Paenibacillus sp. Y412MC10 1 species species 0 1536774 1 Paenibacillus sp. FSL H7-0357 625 277 1 Paenibacillus sp. JDR-2 0 324057 species 0 1566358 1662 Paenibacillus sp. IHBB 10380 1 species species 0 1536775 545 Paenibacillus sp. FSL H7-0737 1 Paenibacillus sp. FSL R7-0273 1 380 0 1536772 species 0 2044880 516 1 species group species 516 1 Paenibacillus riograndensis 0 483937 species 0 172713 304 1 Paenibacillus kribbensis 0 189426 622 Paenibacillus odorifer 1 species species 0 1462996 1 Paenibacillus yonginensis 241 0 365617 1 Paenibacillus sabinae 163 species 0 44251 Paenibacillus durus 1 935 species 0 528191 333 1 Paenibacillus xylanexedens species 0 1616788 1 Paenibacillus bovis 785 species species Paenibacillus graminis 1 853 0 189425 species Paenibacillus naphthalenovorans 1 223 0 162209 0 1126833 Paenibacillus beijingensis 1 322 species 0 1178515 1 Paenibacillus swuensis 289 species Paenibacillus mucilaginosus 1 522 0 61624 species 1 Paenibacillus borealis 510 0 160799 species 4682 1 Paenibacillus polymyxa 0 1406 species 561 1 Paenibacillus crassostreae 0 1763538 species species 680 1 Paenibacillus larvae 0 1464 0 169760 Paenibacillus stellifer 1 199 species 8 Alicyclobacillaceae 1283 0 186823 1 3 family genus 283 1 29330 0 0 405212 283 1 Alicyclobacillus acidocaldarius species genus 1 1 1129704 0 334 3 Kyrpidia 0 2055160 1 Kyrpidia sp. EA-1 173 species 160 1 Kyrpidia tusciae 0 33943 species 1 1 genus 663 Tumebacillus 3 0 432330 1214604 0 Tumebacillus algifaecis 1 278 species 384 1 Tumebacillus avium 0 1903704 species 0 186824 177 2 Thermoactinomycetaceae family 1 1 1 176 0 1677050 genus species 176 Novibacillus thermophilus 1 0 1471761 228 1 0 186821 family 0 663587 228 1 no rank [Bacillus] selenitireducens 1 228 0 85683 species 35201 Staphylococcaceae 41 0 90964 56 1 family genus 5 1 0 2005363 587 Auricoccucs 2 species 0 1849491 Auricoccus indicus 1 582 genus 1 277 0 45669 1 Salinicoccus halodurans 277 0 407035 species 32523 Staphylococcus 33 0 1279 231 1 genus species 0 283734 709 1 Staphylococcus pseudintermedius 0 29384 1 Staphylococcus kloosii 839 species 0 70258 1 Staphylococcus piscifermentans 477 species 932 Staphylococcus cohnii 1 0 29382 species species 0 1280 1 Staphylococcus aureus 3431 854 1 Staphylococcus lugdunensis 0 28035 species species 768 1 Staphylococcus condimenti 0 70255 0 155085 530 Staphylococcus lutrae 1 species 1121 Staphylococcus simiae 1 0 308354 species species 0 61015 795 1 Staphylococcus succinus species 1007 Staphylococcus argenteus 1 0 985002 species Staphylococcus felis 1 625 46127 0 species 0 1282 1 Staphylococcus epidermidis 1934 species 0 214473 Staphylococcus nepalensis 1 845 0 1286 1 Staphylococcus simulans 662 species 1060 Staphylococcus hominis 1 0 1290 species 0 1284 627 1 Staphylococcus hyicus species Staphylococcus xylosus 1 1692 0 1288 species species 0 246432 1394 Staphylococcus equorum 1 377 1 Staphylococcus muscae 0 1294 species species 0 1295 1 Staphylococcus schleiferi 841 1 Staphylococcus carnosus 738 1281 0 species species Staphylococcus pasteuri 1 2295 0 45972 species Staphylococcus capitis 1 1043 0 29388 0 1296 1 Staphylococcus sciuri 1071 species no rank 91994 0 888 1 species 0 1715860 888 Staphylococcus sp. AntiMn-1 1 1283 0 Staphylococcus haemolyticus 1 1016 species 895 Staphylococcus warneri 1 0 1292 species species 0 985762 Staphylococcus agnetis 1 646 1 Staphylococcus pettenkoferi 293 0 170573 species 1048 1 Staphylococcus stepanovicii 0 643214 species species 839 1 Staphylococcus saprophyticus 0 29385 1 9 genus 1758 4 Macrococcus 0 69965 species 0 1855823 Macrococcus canis 1 443 no rank 0 2619255 1 782 species 782 Macrococcus sp. IME1552 1 0 1898474 species 0 69966 Macrococcus caseolyticus 1 524 no rank 0 539002 9 1797 0 539742 7 1149 no rank 7 Exiguobacterium 1149 0 33986 1 10 genus species 184 1 Exiguobacterium sibiricum 0 332410 Exiguobacterium antarcticum 1 162 0 132920 species no rank 4 793 0 2644629 1 Exiguobacterium sp. U13-1 250 0 1849031 species 0 1224749 1 Exiguobacterium sp. ZWU0009 261 species Exiguobacterium sp. AT1b 1 149 0 360911 species 133 1 Exiguobacterium sp. MH3 0 1399115 species no rank 648 2 0 539738 genus 1 4 0 1378 648 2 Gemella no rank 1 644 0 2624949 644 1 Gemella sp. oral taxon 928 0 1785995 species Listeriaceae 9 5571 186820 0 5 1 family 0 2755 614 2 Brochothrix genus 1 1 species 0 2756 Brochothrix thermosphacta 1 613 0 1637 6 Listeria 4952 genus 1 52 species 0 1643 657 1 Listeria welshimeri 1 Listeria innocua 673 0 1642 species 1640 0 Listeria seeligeri 1 578 species 1638 0 1 Listeria ivanovii 994 species species 1998 Listeria monocytogenes 1 1639 0 family 1 22 0 186818 12057 26 Planococcaceae genus 0 157226 1 533 species 0 1508404 533 Jeotgalibacillus malaysiensis 1 0 1372 Planococcus 12 5453 genus 58 1 414778 0 630 1 Planococcus donghaensis species 0 161360 1 Planococcus antarcticus 399 species 0 200991 230 Planococcus rifietoensis 1 species species 0 192421 1 Planococcus maritimus 543 species 1 Planococcus plakortidis 119 0 1038856 1 Planococcus kocurii 543 0 1374 species 0 1215089 Planococcus halocryophilus 1 744 species 972 2 0 2662419 no rank 1 Planococcus sp. PAMC 21323 695 0 1526927 species 0 2058136 277 1 Planococcus sp. MB-3u-03 species 0 1302659 Planococcus sp. L10.15 1 611 species 0 1598147 604 1 Planococcus faecalis species 5 Sporosarcina 3065 0 1569 1 21 genus 1042 Sporosarcina psychrophila 1 0 1476 species 0 1571 Sporosarcina ureae 1 1544 species 458 2 0 2647733 no rank 229 1 Sporosarcina sp. P33 0 1930764 species species 0 1930546 229 1 Sporosarcina sp. P37 0 648800 3 Solibacillus 1616 genus 1 8 species 842 Solibacillus silvestris 1 0 76853 no rank 0 2637870 1 766 766 1 Solibacillus sp. R5-41 0 2048654 species 1 2 genus 2 Rummeliibacillus 597 0 648802 595 1 Rummeliibacillus stabekisii 0 241244 species 0 1649 771 2 Kurthia genus 1 8 no rank 763 1 0 2644826 species 763 Kurthia sp. 11kri321 1 0 1750719 1 181 order 164 Lactobacillales 75531 0 186826 family 8 1 0 81850 Leuconostocaceae 17 5803 0 46254 402 1 genus 402 Oenococcus oeni 1 0 1247 species 0 46255 1757 Weissella 6 genus 6 1 277 Weissella cibaria 1 0 137591 species species 390 1 Weissella paramesenteroides 0 1249 1 Weissella koreensis 407 0 165096 species 209 Weissella ceti 1 759620 0 species species 0 1631871 468 Weissella jogaejeotgali 1 genus 30 1 0 1243 3636 Leuconostoc 9 0 1252 1 Leuconostoc carnosum 471 species species 155 Leuconostoc lactis 1 0 1246 0 255248 1 Leuconostoc garlicum 148 species no rank 363 1 0 2685106 species 0 979982 Leuconostoc sp. C2 1 363 0 1244 855 1 Leuconostoc gelidum species species 333 Leuconostoc citreum 1 0 33964 species 136609 0 Leuconostoc kimchii 1 390 species 0 1245 Leuconostoc mesenteroides 1 891 5536 11 Carnobacteriaceae 186828 0 1 19 family genus 17 1 0 2747 Carnobacterium 5 3321 696 1 Carnobacterium inhibens 0 147709 species species 1449 1 Carnobacterium maltaromaticum 0 2751 0 257487 2 1159 no rank 0 1564681 Carnobacterium sp. CP1 1 443 species 716 1 Carnobacterium sp. 17-4 0 208596 species genus 1 1 0 191769 1220 2 Marinilactibacillus 1219 1 2632303 0 no rank species 0 1911586 1 Marinilactibacillus sp. 15R 1219 0 1470540 976 3 Jeotgalibaca genus 1 7 0 708126 1 Jeotgalibaca dankookensis 452 species no rank 0 2621505 1 517 species 517 1 Jeotgalibaca sp. PTS2502 0 1903686 no rank 0 263855 580 1 1993866 0 1 Lactobacillales bacterium 580 species 0 1300 25058 49 Streptococcaceae family 1 39 1 10 genus 5529 5 Lactococcus 0 1357 species 0 1363 Lactococcus garvieae 1 704 species 0 1366 252 Lactococcus raffinolactis 1 species 1 Lactococcus piscium 686 0 1364 species Lactococcus lactis 1 3877 0 1358 genus 1 186 0 1301 43 Streptococcus 19490 species 0 28037 623 Streptococcus mitis 1 0 2608887 7 1724 no rank Streptococcus sp. oral taxon 431 1 274 0 712633 species 183 1 Streptococcus sp. I-P16 0 1156433 species species 0 1156431 1 Streptococcus sp. I-G2 184 species 1759399 0 1 Streptococcus sp. A12 225 231 Streptococcus sp. FDAARGOS_192 1 0 1839799 species 0 1902136 1 Streptococcus sp. NPS 308 171 species 0 1319 Streptococcus sp. 'group B' 1 456 species species 227 Streptococcus pseudopneumoniae 1 0 257758 771 1 Streptococcus gordonii 0 1302 species species 0 82348 266 1 Streptococcus pluranimalium species 1 Streptococcus himalayensis 213 0 1888195 species group 0 671232 3 1902 species 0 1328 862 Streptococcus anginosus 1 species 0 1338 724 Streptococcus intermedius 1 species 0 76860 1 Streptococcus constellatus 316 421 1 Streptococcus uberis 0 1349 species 0 315405 727 Streptococcus gallolyticus 1 species species 605 1 Streptococcus mutans 0 1309 Streptococcus lutetiensis 1 382 0 150055 species species 819 Streptococcus salivarius 1 0 1304 species 0 1814128 1 Streptococcus halotolerans 288 Streptococcus pyogenes 1 1006 0 1314 species species 523 1 Streptococcus thermophilus 0 1308 630 Streptococcus infantarius 1 0 102684 species species 59310 0 318 1 Streptococcus macedonicus 753 1 Streptococcus pneumoniae 0 1313 species 1 Streptococcus suis 1222 0 1307 species 1 Streptococcus parauberis 511 0 1348 species species 0 1346 487 1 Streptococcus iniae 0 1811193 239 Streptococcus pantholopis 1 species species group 0 119603 2 922 557 Streptococcus equi 1 0 1336 species species 365 Streptococcus dysgalactiae 1 0 1334 0 400065 198 Streptococcus merionis 1 species 266 Streptococcus sanguinis 1 0 1305 species 0 1303 1 Streptococcus oralis 540 species 0 1335 241 Streptococcus equinus 1 species 0 1825069 306 1 Streptococcus marmotae species species 0 197614 Streptococcus pasteurianus 1 318 species 254 1 Streptococcus cristatus 0 45634 0 1318 1 Streptococcus parasanguinis 407 species species 247 1 Streptococcus acidominimus 0 1326 0 1311 Streptococcus agalactiae 1 948 species family 4 1 186827 0 2062 Aerococcaceae 8 1 12 genus 7 Aerococcus 2058 0 1375 0 87541 1 Aerococcus christensenii 311 species 1 Aerococcus urinaehominis 270 0 128944 species species 0 1376 413 1 Aerococcus urinae species Aerococcus sanguinicola 1 188 0 119206 species 0 1377 1 Aerococcus viridans 362 0 51665 502 Aerococcus urinaeequi 1 species 58 Lactobacillaceae 26606 0 33958 1 54 family genus 820 2 0 2767889 species 1 Lactobacillus coryniformis 321 0 1610 499 Lactobacillus backii 1 0 375175 species 0 2759736 3 1285 genus 394 1 Lactobacillus paracasei 0 1597 species 1 Lactobacillus casei 467 1582 0 species species 47715 0 424 1 Lactobacillus rhamnosus Pediococcus 6 2013 0 1253 10 1 genus 1 Pediococcus damnosus 404 0 51663 species 266 1 0 1670797 species group species 266 1 Pediococcus acidilactici 0 1254 species Pediococcus inopinatus 1 330 114090 0 0 187452 410 1 Pediococcus claussenii species 593 1 Pediococcus pentosaceus 1255 0 species 1 284 2767877 0 genus 1 Lactobacillus kunkeei 284 0 148814 species 0 2767890 1 421 genus species 421 1 Lactobacillus hokkaidonensis 0 1193095 2 950 0 2767885 genus 1 Lactobacillus curvatus 327 0 28038 species 1 Lactobacillus sakei 623 0 1599 species 0 2767842 3 2076 genus species Lactobacillus pentosus 1 253 0 1589 0 60520 218 Lactobacillus paraplantarum 1 species 0 1590 Lactobacillus plantarum 1 1605 species genus 0 2767886 3 654 0 1580 1 Lactobacillus brevis 379 species 1 Lactobacillus zymae 105 0 267363 species species 170 1 Lactobacillus koreensis 637971 0 0 2742598 3 1350 genus species 267 Lactobacillus mucosae 1 0 97478 0 1613 1 Lactobacillus fermentum 251 species species 832 Lactobacillus reuteri 1 0 1598 genus 0 2767893 796 3 349 1 Lactobacillus curieae 0 1138822 species species 0 1581 1 Lactobacillus buchneri 250 species 0 152331 1 Lactobacillus parabuchneri 197 genus 1 250 0 2767876 species 1603 0 Lactobacillus amylophilus 1 250 2767892 0 331 1 genus species 331 Lactobacillus paracollinoides 1 0 240427 0 2767887 2323 4 genus species 0 1624 1 Lactobacillus salivarius 1617 1623 0 170 Lactobacillus ruminis 1 species 0 1601 209 Lactobacillus agilis 1 species species 327 Lactobacillus acidipiscis 1 0 89059 genus 2767881 0 1151 2 0 53444 1 Lactobacillus lindneri 617 species 0 1625 534 1 Lactobacillus sanfranciscensis species Lactobacillus 16 8762 0 1578 206 1 genus species 0 1600 1 Lactobacillus acetotolerans 377 species 0 109790 Lactobacillus jensenii 1 504 species Lactobacillus helveticus 1 998 0 1587 0 1579 1 Lactobacillus acidophilus 521 species species 0 1584 Lactobacillus delbrueckii 1 923 0 83683 357 1 Lactobacillus amylolyticus species species 0 33959 1 Lactobacillus johnsonii 1121 no rank 1372 4 0 2620435 species 0 2099788 1 Lactobacillus sp. CBA3605 378 species 2099789 0 289 Lactobacillus sp. CBA3606 1 1 Lactobacillus sp. D1501 266 2108362 0 species 0 1545702 Lactobacillus sp. wkB8 1 439 species 0 1604 Lactobacillus amylovorus 1 490 species species 420 Lactobacillus gallinarum 1 0 52242 409 Lactobacillus kefiranofaciens 1 0 267818 species species 1064 Lactobacillus gasseri 1 0 1596 genus 0 2767879 3086 6 species 0 1847728 Lactobacillus allii 1 543 species 0 392416 631 Lactobacillus crustorum 1 0 1612 1 Lactobacillus farciminis 432 species 562 1 Lactobacillus alimentarius 1602 0 species 391 1 Lactobacillus heilongjiangensis 0 1074467 species Lactobacillus ginsenosidimutans 1 527 0 1007676 species 19 Enterococcaceae 9705 0 81852 1 29 family genus 0 51668 1 811 species 0 51669 811 Tetragenococcus halophilus 1 1 4 genus 3 Vagococcus 1435 0 2737 0 633807 1 Vagococcus penaei 681 species 0 519472 1 Vagococcus teuberi 750 species 6461 12 Enterococcus 0 1350 1 56 genus 1 Enterococcus wangshanyuanii 581 0 2005703 species species 1 Enterococcus hirae 650 0 1354 species Enterococcus casseliflavus 1 245 0 37734 0 2608891 3 890 no rank 1 Enterococcus sp. FDAARGOS_163 279 0 2060306 species 2060307 0 325 Enterococcus sp. FDAARGOS_375 1 species Enterococcus sp. CR-Ec1 1 286 0 2057791 species species 671 Enterococcus mundtii 1 0 53346 species 0 53345 596 Enterococcus durans 1 species 0 417368 Enterococcus thailandicus 1 569 species 0 1351 Enterococcus faecalis 1 1056 0 1352 1147 Enterococcus faecium 1 species genus 1 1 0 33969 969 2 Melissococcus species 968 1 Melissococcus plutonius 0 33970 5864 28 Negativicutes 0 909932 1 9 class 25 1 order Selenomonadales 14 3789 0 909929 0 1843491 1699 Selenomonadaceae 9 family 8 1 genus 1 1 0 158846 Megamonas 2 845 species 844 Megamonas hypermegale 1 158847 0 Selenomonas 6 846 970 0 19 1 genus 3 437 0 2637378 no rank 141 1 Selenomonas sp. oral taxon 478 0 712538 species 1884263 0 Selenomonas sp. oral taxon 920 1 134 species 1 Selenomonas sp. oral taxon 136 162 0 713030 species species 190 1 Selenomonas sputigena 69823 0 species 0 971 200 Selenomonas ruminantium 1 4 Sporomusaceae 2065 0 1843490 1 1 family 2064 Pelosinus 3 0 365348 5 1 genus 0 365349 1 Pelosinus fermentans 976 species no rank 0 2629460 1083 1 0 484770 1083 1 Pelosinus sp. UFO1 species order 1 4 0 1843488 358 5 Acidaminococcales 354 Acidaminococcaceae 4 0 909930 2 1 family 3 Acidaminococcus 352 0 904 1 5 genus species 0 905 213 Acidaminococcus fermentans 1 species 1 Acidaminococcus intestini 134 0 187327 order 1 20 0 1843489 8 Veillonellales 1708 0 31977 7 Veillonellaceae 1688 family 1 8 1 447 0 39948 genus species 447 1 Dialister pneumosintes 0 39950 Veillonella 3 812 0 29465 4 1 genus species 1 Veillonella parvula 595 0 29466 Veillonella rodentium 1 213 0 248315 species genus 1 97 0 909928 species 0 1702287 1 Negativicoccus massiliensis 97 genus 0 906 324 1 324 1 Megasphaera elsdenii 0 907 species phylum 36 6005 0 1297 0 188787 36 Deinococci 6005 class 1 34 2994 Deinococcales 15 0 118964 35 1 order 1 5 family 2959 14 Deinococcaceae 0 183710 genus 45 1 0 1298 2954 Deinococcus 13 no rank 209 1 0 2623546 species 0 2080419 1 Deinococcus sp. NW-56 209 species 215 1 Deinococcus radiodurans 0 1299 0 55148 1 Deinococcus proteolyticus 465 species 141 1 Deinococcus deserti 0 310783 species species 1 Deinococcus actinosclerus 222 0 1768108 Deinococcus puniceus 1 246 0 1182568 species 0 309887 Deinococcus maricopensis 1 317 species species 0 502394 Deinococcus gobiensis 1 275 Deinococcus swuensis 1 216 0 1182571 species 181 1 Deinococcus peraridilitoris 0 432329 species species 68909 0 Deinococcus geothermalis 1 192 0 1309411 Deinococcus soli Cha et al. 2016 1 230 species 0 2762275 3 314 order Trueperaceae 3 314 0 332247 2 1 family genus 1 4 0 332248 2 Truepera 312 species 1 Truepera radiovictrix 308 0 332249 2663 17 Thermales 0 68933 1 25 order 16 Thermaceae 2638 0 188786 1 24 family 1 19 genus 1638 8 Thermus 0 270 species 271 0 1 Thermus aquaticus 212 no rank 1 145 0 2619321 species 1 Thermus sp. CCB_US3_UF1 145 0 1111069 0 37636 136 1 Thermus scotoductus species 274 0 532 1 Thermus thermophilus species 1 Thermus brockianus 154 0 56956 species species 219 1 Thermus oshimai 0 56957 0 456163 1 Thermus parvatiensis 221 species 1 4 genus 2 Marinithermus 177 0 186191 species 0 186192 Marinithermus hydrothermalis 1 173 2 1 genus Oceanithermus 2 297 208447 0 species 1 Oceanithermus profundus 295 0 187137 0 65551 502 Meiothermus 3 genus 4 1 species 0 52022 1 Meiothermus silvanus 209 0 277 289 1 Meiothermus ruber species 3 1 phylum Tenericutes 101 58161 0 544448 no rank 0 713063 2 1842 species Tenericutes bacterium MZ-XQ 1 931 0 1911683 species 0 1911684 911 1 Tenericutes bacterium MO-XQ no rank 852 1 2799557 0 genus 0 1912503 852 1 852 1 0 2624196 no rank species Candidatus Izimaplasma sp. HR1 1 852 1541959 0 0 31969 Mollicutes 97 55464 class 166 1 order 46 1 0 186328 Entomoplasmatales 39 24735 0 33925 7590 Entomoplasmataceae 14 family 30 1 0 46238 2145 5 Entomoplasma genus 1 25 species 0 74700 258 Entomoplasma freundtii 1 species 0 215578 Entomoplasma somnilux 1 593 species 523 Entomoplasma luminosum 1 0 214888 0 81459 Entomoplasma melaleucae 1 746 species genus 114 1 0 46239 Mesoplasma 8 5415 0 138853 488 Mesoplasma lactucae 1 species 0 324078 597 Mesoplasma coleopterae 1 species 2149 0 740 Mesoplasma entomophilum 1 species 0 216427 Mesoplasma chauliocola 1 706 species 0 2151 1355 1 Mesoplasma florum species species 1 Mesoplasma syrphidae 628 225999 0 species 1 Mesoplasma tabanidae 787 0 219745 1 28 family 17099 24 Spiroplasmataceae 0 2131 0 2132 17071 Spiroplasma 23 genus 147 1 species 1076 1 Spiroplasma litorale 0 216942 species 0 2144 1 Spiroplasma mirum 453 species 0 216934 877 Spiroplasma corruscae 1 0 2145 Spiroplasma taiwanense 1 975 species 0 2133 Spiroplasma citri 1 689 species species 0 2136 613 1 Spiroplasma monobiae 0 216938 880 Spiroplasma helicoides 1 species 1 Spiroplasma apis 595 0 2137 species species 0 216944 1 Spiroplasma sabaudiense 509 species 0 216946 1102 1 Spiroplasma turonicum 1113 Spiroplasma cantharicola 1 0 362837 species Spiroplasma floricola 1 1157 0 216937 species 1065 1 Spiroplasma culicicola 0 216935 species species 0 216945 1 Spiroplasma syrphidicola 636 species 1 Spiroplasma eriocheiris 485 0 315358 1114980 0 1 Spiroplasma atrichopogonis 459 species 0 2139 825 Spiroplasma clarkii 1 species species 1 Spiroplasma diminutum 876 0 216936 species Spiroplasma chrysopicola 1 545 0 216933 1180 2 0 2637901 no rank species 590 1 Spiroplasma sp. TU-14 0 1898044 species 1 Spiroplasma sp. NBRC 100390 590 0 1914410 species 0 47834 814 Spiroplasma kunkelii 1 105 1 order Mycoplasmatales 44 25546 0 2085 family 68 1 0 2092 25441 Mycoplasmataceae 43 genus 1 3 0 2129 1313 3 Ureaplasma 1 Ureaplasma parvum 664 0 134821 species 2130 0 646 Ureaplasma urealyticum 1 species 0 2093 Mycoplasma 27 17163 genus 202 1 859 1 Mycoplasma penetrans 0 28227 species species 949 1 Mycoplasma hyopneumoniae 0 2099 0 2128 295 Mycoplasma flocculare 1 species species 530 Mycoplasma canadense 1 0 29554 species group 0 656088 3 3937 0 2102 1908 1 Mycoplasma mycoides species species 0 2105 956 Mycoplasma leachii 1 species 0 2095 1 Mycoplasma capricolum 1073 species 754 Mycoplasma putrefaciens 1 0 2123 species 285 1 Mycoplasma genitalium 0 2097 species Mycoplasma suis 1 298 0 57372 species 0 2111 329 1 Mycoplasma arthritidis species 0 86660 Mycoplasma dispar 1 370 species 1 Mycoplasma parvum 513 0 984991 0 2100 650 Mycoplasma hyorhinis 1 species species 0 2098 Mycoplasma hominis 1 859 no rank 434 1 0 2683645 species 434 Mycoplasma sp. (ex Biomphalaria glabrata) 1 0 1749074 0 65123 1 Mycoplasma wenyonii 130 species 1 Mycoplasma gallisepticum 525 0 2096 species 0 136241 558 Mycoplasma haemocanis 1 species 756 1 Mycoplasma yeatsii 0 51365 species species Mycoplasma haemofelis 1 1753 0 29501 species 560 1 Mycoplasma bovoculi 45362 0 0 2104 102 Mycoplasma pneumoniae 1 species species 0 50052 617 1 Mycoplasma crocodyli Mycoplasma mobile 1 721 0 2118 species species 0 171632 1 Mycoplasma ovis 177 genus 12 6897 0 2767358 0 2107 1 Mycoplasma pulmonis 615 species 0 171284 Mycoplasma cynos 1 598 species species 2113 0 Mycoplasma californicum 1 355 species 1 Mycoplasma bovirhinis 528 0 29553 0 2112 1 Mycoplasma bovigenitalium 366 species species Mycoplasma pullorum 1 398 0 48003 species 1 Mycoplasma fermentans 610 2115 0 Mycoplasma bovis 1 1154 0 28903 species species 0 2110 1 Mycoplasma agalactiae 614 0 2094 Mycoplasma arginini 1 598 species 615 1 Mycoplasma canis 0 29555 species 446 Mycoplasma synoviae 1 0 2109 species order 1 9 186329 0 13 Acholeplasmatales 5017 24 1 family 5008 Acholeplasmataceae 12 2146 0 18 1 genus Candidatus Phytoplasma 6 2240 0 33926 species group 3 1214 0 85620 349 Maize bushy stunt phytoplasma 1 0 202462 species 1 Onion yellows phytoplasma 454 0 100379 species 0 229545 411 Aster yellows witches'-broom phytoplasma 1 species species group 0 85630 1 500 species 500 1 Candidatus Phytoplasma mali 37692 0 0 85632 508 1 species group 508 1 Candidatus Phytoplasma australiense 0 59748 species 2744 Acholeplasma 5 0 2147 19 1 genus 0 2148 646 Acholeplasma laidlawii 1 species species 38986 0 1007 1 Acholeplasma palmae species 748 Acholeplasma oculi 1 0 35623 species 0 61635 324 1 Acholeplasma brassicae phylum 0 67819 4 357 class 13 1 0 1663419 357 Fimbriimonadia 4 3 Fimbriimonadales 344 0 1663425 1 2 order family 0 1663426 2 342 Fimbriimonas 2 342 0 1005038 4 1 genus species 0 1005039 1 Fimbriimonas ginsengisoli 338 159 1351131 0 1798711 clade 0 1117 1351131 Cyanobacteria 159 phylum 29 1 0 1161 31764 Nostocales 34 order 95 1 family 1 6 1892263 0 3 Hapalosiphonaceae 2502 2496 Fischerella 2 0 1190 10 1 genus 2486 1 0 494603 no rank species 2486 1 Fischerella sp. NIES-3754 0 1752063 family 1 41 0 1185 3 Rivulariaceae 2257 0 373984 2216 2 Rivularia genus 1 2 2676603 0 2214 1 no rank 0 373994 2214 1 Rivularia sp. PCC 7116 species 1 1036 0 1219117 no rank species 1940762 0 1036 1 Nostocales cyanobacterium HT-58-2 family 1 71 0 1162 18 Nostocaceae 16803 3 Trichormus 2128 0 264688 1 5 genus species 1169 Trichormus azollae 1 1164 0 species 0 264691 Trichormus variabilis 1 954 10940 10 Nostoc 1177 0 1 87 genus species 0 1306274 1 Nostoc flagelliforme 1438 species 974 Nostoc punctiforme 1 0 272131 7 8441 0 2593658 no rank 28072 0 1 Nostoc sp. PCC 7524 1378 species 0 1261031 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1178 species species 0 317936 Nostoc sp. PCC 7107 1 1442 species 0 1751286 Nostoc sp. NIES-3756 1 1331 species 1047 Nostoc sp. PCC 7120 1 0 103690 species 0 1618022 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 973 0 1869241 1092 1 Nostoc sp. CENA543 species 4 Anabaena 3664 0 1163 1 36 genus 0 1165 1330 Anabaena cylindrica 1 species 0 2619674 2298 2 no rank species 1101 1 Anabaena sp. WA102 0 1647413 species 1197 1 Anabaena sp. 90 0 46234 family 8 9071 0 2661849 1186 0 8 Calothrix 9071 genus 1 50 no rank 6 7854 0 2619626 species 0 99598 1 Calothrix sp. PCC 7507 1053 0 2005461 Calothrix sp. NIES-4101 1 1443 species species Calothrix sp. NIES-3974 1 1189 0 2005462 1319 Calothrix sp. NIES-2098 1 1954171 0 species species 0 2005469 Calothrix sp. NIES-4071 1 1831 1019 1 Calothrix sp. 336/3 0 1337936 species 0 32054 1167 Calothrix parietina 1 species class 2 1 0 307596 758 Gloeobacteria 6 0 307595 756 Gloeobacterales 5 order 5 1 Gloeobacteraceae 4 751 0 1890422 22 1 family genus 4 1 0 33071 729 Gloeobacter 3 species 388 1 Gloeobacter violaceus 33072 0 species 1 Gloeobacter kilaueensis 337 0 1416614 Pleurocapsales 8 4270 52604 0 3 1 order 0 1890500 3 Hyellaceae 591 family 1 22 0 44474 Pleurocapsa 2 569 genus 5 1 0 54308 564 Pleurocapsa minor 1 species 20 1 family Dermocarpellaceae 4 3676 0 1890498 0 102115 3656 3 Stanieria genus 1 21 1 2132 0 2642663 no rank 1 Stanieria sp. NIES-3757 2132 0 1807358 species 0 102116 Stanieria cyanosphaera 1 1503 species 1282308 Synechococcales 58 0 1890424 214 1 order family 21 1 0 1213 Prochloraceae 5 1261710 1218 0 Prochlorococcus 4 1261689 genus 83 1 0 1219 1166942 Prochlorococcus marinus 1 species no rank 0 2627481 94664 2 2963 Prochlorococcus sp. MIT 0801 1 0 1501269 species 0 1501268 91701 Prochlorococcus sp. MIT 0604 1 species family 2 775 0 2303730 Halomicronema 2 775 0 170610 7 1 genus species 0 1209493 1 Halomicronema hongdechloris 768 1 3 family 5 Merismopediaceae 1524 0 1890428 0 1142 4 Synechocystis 1521 genus 1 40 no rank 0 2640012 1481 3 species 0 2116702 1 Synechocystis sp. IPPAS B-1465 365 species 0 1147 749 1 Synechocystis sp. PCC 6714 367 1 Synechocystis sp. PCC 6803 0 1148 species Acaryochloridaceae 3 955 0 1890429 8 1 family 0 155977 2 Acaryochloris 947 genus 1 11 155978 0 1 Acaryochloris marina 936 species 0 1890438 2136 6 Leptolyngbyaceae family 1 16 47251 0 2120 Leptolyngbya 5 genus 19 1 no rank 3 1624 0 2650499 species 0 1080068 360 Leptolyngbya sp. O-77 1 species 1 Leptolyngbya sp. NIES-3755 435 0 1752064 829 Leptolyngbya sp. PCC 7376 1 111781 0 species species 0 1184 477 Leptolyngbya boryana 1 47 1 family Synechococcaceae 33 13631 0 1890426 0 167375 Cyanobium 3 1156 genus 11 1 species 0 59930 567 1 Cyanobium gracile 0 2627006 578 1 no rank species 0 1851505 1 Cyanobium sp. NIES-981 578 genus 0 146785 1 234 species 234 Thermosynechococcus elongatus 1 0 146786 11410 26 Synechococcus 0 1129 1 225 genus species 1 Synechococcus lividus 221 0 33070 0 2626047 23 10751 no rank 0 110662 1 Synechococcus sp. CC9605 1193 species species 0 1827144 225 Synechococcus sp. NIES-970 1 species 1 Synechococcus sp. WH 7803 424 0 32051 species 0 585425 917 1 Synechococcus sp. KORDI-52 Synechococcus sp. WH 8103 1 606 0 29410 species 0 1280380 436 Synechococcus sp. KORDI-100 1 species species 0 321327 189 1 Synechococcus sp. JA-3-3Ab 1 Synechococcus sp. CC9311 379 0 64471 species species 374981 0 1 Synechococcus sp. PCC 7003 315 species 195253 0 323 Synechococcus sp. PCC 6312 1 212 Synechococcus sp. UTEX 2973 1 0 1350461 species species 259 1 Synechococcus sp. PCC 8807 0 195248 0 316279 1 Synechococcus sp. CC9902 381 species species 0 84588 618 1 Synechococcus sp. WH 8102 species 195498 0 Synechococcus sp. PCC 7117 1 254 0 585423 1 Synechococcus sp. KORDI-49 496 species species 0 321332 311 1 Synechococcus sp. JA-2-3B'a(2-13) species 1 Synechococcus sp. PCC 7002 240 0 32049 species 0 316278 405 Synechococcus sp. RCC307 1 0 166314 1099 1 Synechococcus sp. WH 8109 species species 442 Synechococcus sp. SynAce01 1 0 1916956 species 263 1 Synechococcus sp. PCC 73109 0 374982 Synechococcus sp. PCC 7502 1 764 0 1173263 species 1 Synechococcus elongatus 213 0 32046 species 1 1 genus 784 2 Dactylococcopsis 13034 0 1 Dactylococcopsis salina 783 0 292566 species 0 1890436 1363 3 Pseudanabaenaceae family 1 3 2 Pseudanabaena 1360 0 1152 1 6 genus no rank 1 1354 0 2593292 1354 Pseudanabaena sp. PCC 7367 1 0 82654 species subclass 47 29619 0 1301283 0 1150 9936 21 Oscillatoriales order 1 91 59 1 family Cyanothecaceae 3 417 0 1892249 0 43988 358 2 Cyanothece genus 1 55 1 303 2649277 0 no rank species 0 395961 303 1 Cyanothece sp. PCC 7425 0 1892255 3 Gomontiellaceae 1054 family 1 2 1052 2 Crinalium 241421 0 1 4 genus species 0 241425 1 Crinalium epipsammum 1048 24 1 family Microcoleaceae 5 2760 0 1892252 0 44471 643 Microcoleus 2 genus 14 1 0 2642155 629 1 no rank 0 1173027 629 Microcoleus sp. PCC 7113 1 species 0 1205 Trichodesmium 2 2093 genus 7 1 species 0 1206 Trichodesmium erythraeum 1 2086 24 1 family 240 Coleofasciculaceae 3 0 1892251 0 63132 2 Geitlerinema 216 genus 1 4 0 2648775 1 212 no rank 212 Geitlerinema sp. PCC 7407 1 0 1173025 species 0 1892254 5374 6 Oscillatoriaceae family 1 62 1979 2 Moorea 0 1155738 1 10 genus 0 1155739 1969 1 Moorea producens species 1 16 genus 3 Oscillatoria 3333 0 1158 species 0 118323 1948 Oscillatoria acuminata 1 species 0 482564 1369 1 Oscillatoria nigro-viridis order 47 1 0 1118 Chroococcales 26 19683 family 75 1 0 1890464 7913 Chroococcaceae 8 1 9 genus 3 Geminocystis 3431 0 669357 no rank 3422 2 2625037 0 2110 Geminocystis sp. NIES-3708 1 0 1615909 species species 1 Geminocystis sp. NIES-3709 1312 0 1617448 genus 4 1 102231 0 Gloeocapsa 2 840 0 2623012 1 836 no rank species 836 Gloeocapsa sp. PCC 7428 1 0 1173026 genus 3 1 0 268175 3567 Chondrocystis 2 0 2648896 1 3564 no rank species 0 2005460 3564 Chondrocystis sp. NIES-4102 1 family 7 1 0 1890452 1530 Cyanobacteriaceae 3 genus 3 1 0 102234 1523 Cyanobacterium 2 379064 0 Cyanobacterium aponinum 1 1520 species family 11 1 0 1890449 Microcystaceae 4 3348 12 1 genus 3337 Microcystis 3 0 1125 no rank 1 893 0 2643300 species 893 Microcystis sp. MC19 1 0 1967666 Microcystis aeruginosa 1 2432 0 1126 species family 11 1 0 1890450 6845 Aphanothecaceae 10 genus 2 1363 0 2546365 species 0 2546366 2 1363 0 41431 Cyanothece sp. PCC 8801 1 653 strain 0 395962 Cyanothece sp. PCC 8802 1 710 strain no rank 708 2 0 92682 708 2 Halothece 0 76023 1 3 genus 705 1 2632878 0 no rank species 0 65093 Halothece sp. PCC 7418 1 705 genus 0 263510 1 905 0 2546360 905 1 species Cyanothece sp. ATCC 51142 1 905 0 43989 strain genus 1 1 0 1453359 1289 2 Candidatus Atelocyanobacterium 713887 0 Candidatus Atelocyanobacterium thalassa 1 1288 species 0 28070 2569 2 genus 0 2546359 1 1262 species Cyanothece sp. PCC 7822 1 1262 0 497965 strain 1 1307 0 2546356 species Cyanothece sp. PCC 7424 1 1307 0 65393 strain 0 1983111 1 734 no rank 0 718217 734 1 cyanobacterium endosymbiont of Epithemia turgida species 1 5 order 1649 4 Chroococcidiopsidales 0 1890505 1644 3 Chroococcidiopsidaceae 0 1890528 1 29 family genus 6 1 0 54298 1615 Chroococcidiopsis 2 1 Chroococcidiopsis thermalis 1609 0 54299 species Actinobacteria 627 232898 0 201174 20 1 phylum 0 84995 5 Rubrobacteria 561 class 1 4 557 4 Rubrobacterales 0 84996 1 11 order 1 4 family 546 3 Rubrobacteraceae 0 84997 genus 542 2 42255 0 species Rubrobacter xylanophilus 1 297 0 49319 species 245 Rubrobacter radiotolerans 1 0 42256 16 1 class Coriobacteriia 27 3345 0 84998 Eggerthellales 14 2144 0 1643822 16 1 order 0 1643826 13 Eggerthellaceae 2128 family 1 13 582 3 Gordonibacter 0 644652 1 17 genus Gordonibacter massiliensis 1 282 0 1841863 species 283 1 Gordonibacter urolithinfaciens 1335613 0 species genus 139 1 0 79603 species 0 79604 Denitrobacterium detoxificans 1 139 genus 356 1 0 1981050 species 1 Phoenicibacter massiliensis 356 0 1944646 194 1 0 447020 genus species 1 Adlercreutzia equolifaciens 194 0 446660 0 84162 Cryptobacterium 2 169 genus 1 1 species 0 84163 168 Cryptobacterium curtum 1 Eggerthella 3 492 0 84111 6 1 genus no rank 1 142 0 2648737 142 1 Eggerthella sp. YY7918 0 502558 species 0 84112 1 Eggerthella lenta 344 species 0 84108 1 183 genus 0 84110 183 Slackia heliotrinireducens 1 species Coriobacteriales 12 1185 0 84999 14 1 order family 1 2 0 1643824 791 7 Atopobiaceae 0 133925 612 4 Olsenella genus 1 1 species 132 Olsenella uli 1 0 133926 0 1805478 245 1 Olsenella sp. Marseille-P2300 species no rank 0 2638792 234 1 species Olsenella sp. oral taxon 807 1 234 0 712411 genus 0 2767353 1 176 species 176 1 Atopobium parvulum 0 1382 0 1380 1 1 Atopobium genus 0 84107 4 Coriobacteriaceae 380 family 1 2 genus 0 33870 1 118 species 1 Coriobacterium glomerans 118 0 33871 126 1 0 84113 no rank Coriobacteriaceae bacterium 68-1-3 1 126 0 1531429 species 0 102106 1 134 genus 0 74426 134 Collinsella aerofaciens 1 species no rank 0 1752188 1184 4 0 1848255 Actinobacteria bacterium IMCC25003 1 221 species 0 1848754 Actinobacteria bacterium IMCC19121 1 426 species species 1 Actinobacteria bacterium IMCC26077 172 0 1848755 365 1 Actinobacteria bacterium IMCC26103 0 1848756 species 0 1497346 3192 4 class 3192 Solirubrobacterales 4 0 588673 16 1 order family 8 1 0 320583 Conexibacteraceae 3 3176 genus 2 1 0 191494 3168 Conexibacter 2 3166 1 Conexibacter woesei 0 191495 species 223756 580 Actinobacteria 0 1760 1 763 class order 1 1 0 2037 18 Actinomycetales 2547 2546 17 Actinomycetaceae 0 2049 1 19 family genus 148 1 0 1069494 1661 0 1 Trueperella pyogenes 148 species genus 1 239 0 2050 239 Mobiluncus curtisii 1 0 2051 species 112 Arcanobacterium 2 28263 0 1 1 genus species 111 Arcanobacterium haemolyticum 1 0 28264 genus 1 99 2529408 0 Actinomyces meyeri 1 99 0 52773 species 2 1 genus 129 Actinotignum 2 0 1653174 127 1 Actinotignum schaalii 0 59505 species 1 46 genus 9 Actinomyces 1800 0 1654 0 1960083 1 Actinomyces gaoshouyii 180 species species 0 1912795 132 Actinomyces sp. VUL4_3 1 no rank 3 829 0 2609248 Actinomyces sp. oral taxon 897 1 238 0 2081702 species 266 1 Actinomyces sp. Chiba101 0 1851395 species species 1 Actinomyces sp. oral taxon 414 325 0 712122 species 1 Actinomyces pacaensis 58 0 1852377 0 111015 367 1 Actinomyces radicidentis species Actinomyces oris 1 188 544580 0 species 401 3 0 1643684 order 1 1 family 3 Nakamurellaceae 401 0 85031 genus 1 1 0 53460 400 2 Nakamurella species Nakamurella multipartita 1 399 0 53461 0 1643683 171 2 order 171 2 0 85032 family genus 1 6 0 28048 171 2 Acidothermus species 0 28049 Acidothermus cellulolyticus 1 165 4 1 order 601 Kineosporiales 3 0 622452 family 6 1 0 83778 597 Kineosporiaceae 2 genus 1 591 33981 0 0 131568 Kineococcus radiotolerans 1 591 species 0 1643682 8 Geodermatophilales 1471 order 1 4 family 16 1 0 85030 Geodermatophilaceae 7 1467 1 3 genus 2 Geodermatophilus 450 0 1860 species 1 Geodermatophilus obscurus 447 0 1861 1 1 genus 551 Blastococcus 2 0 38501 species Blastococcus saxobsidens 1 550 0 138336 2 Modestobacter 450 0 88138 1 4 genus Modestobacter marinus 1 446 477641 0 species 6503 32 Propionibacteriales 0 85009 1 49 order family 1 27 0 85015 3240 12 Nocardioidaceae 467 Kribbella 2 0 182639 23 1 genus 444 Kribbella flavida 1 0 182640 species 425 1 0 2040 genus species 425 1 Aeromicrobium erythreum 0 2041 0 2044 2 Pimelobacter 610 genus 1 1 0 2045 Pimelobacter simplex 1 609 species 1 4 genus 2 Micropruina 237 0 116071 Micropruina glycogenica 1 233 0 75385 species genus 1 94 0 1839 4 Nocardioides 1474 1 Nocardioides dokdonensis 610 0 450734 species species 0 2045452 1 Nocardioides sp. 78 275 no rank 495 1 0 2615069 species 495 1 Nocardioides sp. JS614 0 196162 family 26 1 31957 0 Propionibacteriaceae 19 3214 genus 3 1 0 29404 Microlunatus 2 326 Microlunatus phosphovorus 1 323 29405 0 species 131 1 203133 0 genus 1 131 0 2633994 no rank 0 1871034 131 1 Propionimicrobium sp. Marseille-P3275 species genus 0 2801844 1 188 188 Pseudopropionibacterium propionicum 1 0 1750 species genus 2 1 0 1912216 482 Cutibacterium 4 species 0 33011 109 1 Cutibacterium granulosum 0 1747 199 Cutibacterium acnes 1 species species 172 Cutibacterium avidum 1 0 33010 2 Acidipropionibacterium 364 0 1912215 1 1 genus species 363 1 Acidipropionibacterium acidipropionici 0 1748 0 1743 563 3 Propionibacterium genus 1 1 no rank 84 1 0 2608905 0 671223 84 1 Propionibacterium sp. oral taxon 193 species species 478 1 Propionibacterium freudenreichii 1744 0 genus 3 1 0 72763 1134 Tessaracoccus 5 269 1 Tessaracoccus flavescens 0 399497 species species 1610493 0 Tessaracoccus flavus 1 236 0 2635419 1 308 no rank 0 1909732 1 Tessaracoccus sp. T2.5-30 308 species species 318 1 Tessaracoccus aquimaris 0 1332264 0 622450 3 293 order family 1 3 0 622451 3 Actinopolysporaceae 293 2 Actinopolyspora 290 0 1849 1 1 genus 0 414996 Actinopolyspora erythraea 1 289 species 0 85014 451 3 order 13 1 family Glycomycetaceae 3 451 0 85034 0 283810 438 2 Stackebrandtia genus 1 6 0 283811 432 1 Stackebrandtia nassauensis species 0 85007 48358 160 Corynebacteriales order 1 206 family 43 1 0 1762 Mycobacteriaceae 56 20634 genus 2 665 0 1073531 0 1788 1 Mycobacterium terrae 367 species species 0 875328 298 1 Mycobacterium sinense 13 5298 0 1866885 genus species 1810 0 476 Mycobacterium vaccae 1 392 Mycobacterium litorale 1 0 758802 species species 0 36814 Mycobacterium rhodesiae 1 284 species 0 1771 Mycobacterium phlei 1 482 0 1791 499 Mycobacterium aurum 1 species species 1 Mycobacterium gilvum 700 1804 0 439 1 Mycobacterium vanbaalenii 0 110539 species species 0 1797 265 Mycobacterium thermoresistibile 1 species 0 1772 1 Mycobacterium smegmatis 429 1 Mycobacterium fortuitum 256 0 1766 species 0 1800 Mycobacterium chubuense 1 402 species species 0 1795 Mycobacterium neoaurum 1 273 Mycobacterium goodii 1 401 0 134601 species genus 0 697025 1 219 0 639313 219 1 Hoyosella subflava species 3370 5 0 670516 genus 0 1520670 1 Mycobacterium stephanolepidis 166 species species 229 1 Mycobacterium chelonae 0 1774 236 Mycobacterium immunogenum 1 0 83262 species 0 36809 2561 1 Mycobacterium abscessus species species 178 1 Mycobacterium saopaulense 0 1578165 11039 Mycobacterium 34 0 1763 484 1 genus 13 3764 0 2642494 no rank species 363 Mycobacterium sp. djl-10 1 0 1879023 Mycobacterium sp. VKM Ac-1817D 1 242 0 1273687 species species 0 1920667 1 Mycobacterium sp. WY10 311 1682113 0 331 1 Mycobacterium sp. YC-RL4 species Mycobacterium sp. JS623 1 562 0 212767 species species 307 Mycobacterium sp. KMS 1 0 189918 species 98 1 Mycobacterium sp. MOTT36Y 1168287 0 species 164757 0 287 1 Mycobacterium sp. JLS species 1 Mycobacterium sp. PYR15 254 0 2051552 species 0 1545728 281 Mycobacterium sp. EPa45 1 species 0 164756 293 Mycobacterium sp. MCS 1 species 1 Mycobacterium sp. NRRL B-3805 273 0 1570328 0 1561223 1 Mycobacterium sp. QIA-37 162 species 1 Mycobacterium dioxanotrophicus 478 0 482462 species species group 1217 4 77643 0 220 1 Mycobacterium canettii 0 78331 species 0 1773 997 3 Mycobacterium tuberculosis species 1 380 biotype Mycobacterium africanum 1 300 0 33894 biotype 0 1765 1 Mycobacterium bovis 317 264 1 0 2249310 species group 264 1 Mycobacterium shigaense 0 722731 species 90 Mycobacterium leprae 1 0 1769 species 0 261524 332 Mycobacterium liflandii 1 species species 1 Mycobacterium kansasii 331 0 1768 0 1781 762 Mycobacterium marinum 1 species 198 Mycobacterium haemophilum 1 0 29311 species 2788 8 0 120793 species group species Mycobacterium marseillense 1 213 0 701042 0 339268 326 1 Mycobacterium colombiense species 1764 0 1338 Mycobacterium avium 1 species species 192 1 0 1767 Mycobacterium intracellulare 4 803 108 1 Mycobacterium indicus pranii 0 35617 subspecies subspecies 1203599 0 159 1 Mycobacterium yongonense subspecies 344 1 Mycobacterium chimaera 0 222805 108 Mycobacterium paraintracellulare 1 0 1138383 species species 0 1809 331 Mycobacterium ulcerans 1 family 174 2 0 316606 genus 1 1 0 286801 174 Segniliparus 2 1 Segniliparus rotundus 173 286802 0 species no rank 0 697024 1 167 genus 167 1 0 1847725 Lawsonella clevelandensis 1 167 0 1528099 species 874 Tsukamurellaceae 4 0 85028 1 1 family 5 1 genus 873 Tsukamurella 3 0 2060 1 Tsukamurella paurometabola 316 0 2061 species species Tsukamurella tyrosinosolvens 1 552 57704 0 family 1 52 0 85025 12893 31 Nocardiaceae 0 1817 7 Nocardia 3724 genus 1 42 species 686 1 Nocardia cyriacigeorgica 0 135487 0 37332 463 Nocardia seriolae 1 species 0 37326 1031 1 Nocardia brasiliensis species 37330 0 1 Nocardia nova 396 species 0 37329 Nocardia farcinica 1 643 species species 463 Nocardia terpenica 1 0 455432 genus 174 1 0 1827 Rhodococcus 23 9117 species 103816 0 1 Rhodococcus pyridinivorans 457 species 461 Rhodococcus aetherivorans 1 0 191292 360 Rhodococcus fascians 1 0 1828 species 0 1830 1 Rhodococcus ruber 559 species 1833 0 599 Rhodococcus erythropolis 1 species no rank 12 3470 0 192944 species 0 1653479 258 1 Rhodococcus sp. PBTS 2 species 1 Rhodococcus sp. MTM3W5.2 500 0 1805827 species Rhodococcus sp. BH4 1 177 0 1807790 195 1 Rhodococcus sp. WMMA185 0 679318 species Rhodococcus sp. WB1 1 482 0 1033922 species species 0 1045808 234 Rhodococcus sp. YL-1 1 species 1 Rhodococcus sp. H-CA8f 245 0 1727214 0 1564114 258 1 Rhodococcus sp. B7740 species 0 1723645 Rhodococcus sp. 008 1 201 species 361 1 Rhodococcus sp. p52 0 935199 species species 1570939 0 Rhodococcus sp. 2G 1 264 species 0 1653478 295 1 Rhodococcus sp. PBTS 1 species 0 37919 1389 Rhodococcus opacus 1 species 330 Rhodococcus hoagii 1 0 43767 species 0 334542 363 Rhodococcus qingshengii 1 608 Rhodococcus jostii 1 0 132919 species species 347 1 Rhodococcus rhodochrous 0 1829 1 1 family 546 Dietziaceae 4 0 85029 3 Dietzia 545 0 37914 1 1 genus species 0 499555 190 Dietzia timorensis 1 1 354 0 2617939 no rank species 712270 0 354 Dietzia sp. oral taxon 368 1 Corynebacteriaceae 52 10764 0 1653 35 1 family genus 128 1 1716 0 Corynebacterium 51 10729 species 0 108486 1 Corynebacterium falsenii 198 species 198 1 [Brevibacterium] flavum 0 92706 species 147 1 Corynebacterium crudilactis 0 1652495 species Corynebacterium kroppenstedtii 1 74 161879 0 Corynebacterium urealyticum 1 155 0 43771 species 291 Corynebacterium sphenisci 1 0 191493 species species 154 Corynebacterium stationis 1 0 1705 0 136857 198 1 Corynebacterium testudinoris species Corynebacterium ureicelerivorans 1 126 401472 0 species species 1 Corynebacterium argentoratense 210 0 42817 0 43770 Corynebacterium striatum 1 289 species species 1 Corynebacterium aquilae 249 0 203263 species Corynebacterium cystitidis 1 218 0 35757 species 0 1121358 149 1 Corynebacterium doosanense species Corynebacterium deserti 1 228 0 1408191 Corynebacterium vitaeruminis 1 312 0 38305 species species 0 1404244 169 1 Corynebacterium glyciniphilum 0 1231000 175 1 Corynebacterium lactis species 287 1 Corynebacterium frankenforstense 0 1230998 species 107 1 Corynebacterium epidermidicanis 0 1050174 species species 0 1721 1 Corynebacterium callunae 184 0 1223514 Corynebacterium humireducens 1 271 species species 219 Corynebacterium diphtheriae 1 0 1717 228 Corynebacterium marinum 1 0 349751 species 0 187491 Corynebacterium glaucum 1 151 species species 0 160386 1 Corynebacterium casei 137 species 1 Corynebacterium camporealensis 113 0 161896 species 0 161899 111 Corynebacterium singulare 1 169292 0 1 Corynebacterium aurimucosum 120 species species Corynebacterium variabile 1 258 0 1727 0 146827 1 Corynebacterium simulans 122 species species 186 Corynebacterium pseudotuberculosis 1 0 1719 191610 0 138 Corynebacterium atypicum 1 species Corynebacterium uterequi 1 1560 0 1072256 species Corynebacterium ammoniagenes 1 134 0 1697 species species Corynebacterium mustelae 1 159 0 571915 species 0 225326 1 Corynebacterium halotolerans 200 Corynebacterium terpenotabidum 1 220 0 89154 species 0 575200 Corynebacterium maris 1 242 species 201 1 Corynebacterium kutscheri 0 35755 species Corynebacterium phocae 1 117 0 161895 species 0 1718 1 Corynebacterium glutamicum 516 species species 113 1 Corynebacterium imitans 0 156978 species Corynebacterium flavescens 1 126 0 28028 65058 0 130 1 Corynebacterium ulcerans species 0 2624378 2 288 no rank Corynebacterium sp. NML98-0116 1 196 0 702967 species 92 Corynebacterium sp. ATCC 6931 1 0 1487956 species species 0 258224 1 Corynebacterium resistens 87 species Corynebacterium jeikeium 1 205 0 38289 species 152794 0 131 1 Corynebacterium efficiens 0 85026 2100 9 Gordoniaceae family 1 1 genus 15 1 0 2053 2099 Gordonia 8 1 Gordonia iterans 281 0 1004901 species 0 1136941 253 1 Gordonia phthalatica species species 367 1 Gordonia polyisoprenivorans 0 84595 no rank 0 2657482 522 2 337191 0 Gordonia sp. KTR9 1 292 species 230 1 Gordonia sp. YC-JH1 0 2059875 species 0 2055 1 Gordonia terrae 312 species species 0 2054 349 1 Gordonia bronchialis 17237 Pseudonocardiales 41 0 85010 16 1 order 17221 40 Pseudonocardiaceae 0 2070 1 125 family genus 7 1 0 43356 Kutzneria 2 585 578 1 Kutzneria albida 0 43357 species 1 1 genus 570 2 Alloactinosynnema 0 674734 0 2636053 1 569 no rank 569 1 Alloactinosynnema sp. L-07 0 1653480 species 4 1 genus Saccharopolyspora 2 596 0 1835 592 Saccharopolyspora erythraea 1 0 1836 species 0 142577 363 2 Prauserella genus 1 3 species 530584 0 360 1 Prauserella marina 3 1 genus Saccharothrix 2 766 0 2071 Saccharothrix espanaensis 1 763 0 103731 species 1 12 genus 3 Actinosynnema 1414 0 40566 42197 0 Actinosynnema pretiosum 1 677 species species 725 1 Actinosynnema mirum 0 40567 1 1 genus 730 Lentzea 2 0 165301 0 1586287 Lentzea guizhouensis 1 729 species 34 1 genus 2812 Actinoalloteichus 6 0 65496 586 1 Actinoalloteichus hoggarensis 0 1470176 species 0 1612552 1 Actinoalloteichus sp. ADI127-7 730 species 0 2644606 1146 2 no rank species 0 1612551 Actinoalloteichus sp. GBA129-24 1 640 506 1 Actinoalloteichus sp. AHMU CJ021 0 2072503 species 316 1 Actinoalloteichus hymeniacidonis 0 340345 species 1847 0 4391 8 Pseudonocardia genus 1 51 2619320 0 6 3672 no rank 653 1 Pseudonocardia sp. HH130630-07 0 1690815 species 0 1641402 Pseudonocardia sp. HH130629-09 1 486 species species 681 Pseudonocardia sp. EC080610-09 1 1688404 0 609 1 Pseudonocardia sp. EC080619-01 0 1096856 species 445576 0 1 Pseudonocardia sp. AL041005-10 682 species species 0 1096868 Pseudonocardia sp. EC080625-04 1 561 240495 0 668 1 Pseudonocardia dioxanivorans species 1 4 genus 2 Saccharomonospora 334 0 1851 330 1 Saccharomonospora viridis 0 1852 species genus 1 620 0 2029 species 1 Kibdelosporangium phytohabitans 620 0 860235 3915 7 Amycolatopsis 0 1813 1 30 genus Amycolatopsis mediterranei 1 691 0 33910 species no rank 2 1120 0 2618356 species 1 Amycolatopsis sp. AA4 564 0 1896961 0 1911175 556 Amycolatopsis sp. BJA-103 1 species 0 1814 1 Amycolatopsis methanolica 482 species 0 31958 1 Amycolatopsis orientalis 1008 species 0 208439 584 1 Amycolatopsis japonica species order 9 1 0 85004 4505 Bifidobacteriales 26 23 1 family Bifidobacteriaceae 25 4496 0 31953 196081 0 140 2 Scardovia genus 1 2 species 138 Scardovia inopinata 1 78259 0 genus 1 1 0 2701 Gardnerella 2 518 517 Gardnerella vaginalis 1 0 2702 species 1 150 196082 0 genus species 0 78258 150 Parascardovia denticolens 1 3665 Bifidobacterium 19 0 1678 36 1 genus 73 1 Bifidobacterium indicum 1691 0 species species 1 Bifidobacterium coryneforme 53 1687 0 species 0 1689 1 Bifidobacterium dentium 209 0 1694 Bifidobacterium pseudolongum 1 276 species 333 Bifidobacterium breve 1 0 1685 species 0 1681 1 Bifidobacterium bifidum 219 species 0 33905 Bifidobacterium thermophilum 1 128 species species 1 Bifidobacterium animalis 193 0 28025 species 158787 0 1 Bifidobacterium scardovii 212 0 1684 Bifidobacterium asteroides 1 126 species species 1 Bifidobacterium pseudocatenulatum 124 0 28026 species Bifidobacterium adolescentis 1 125 0 1680 species 0 35760 1 Bifidobacterium choerinum 249 0 1683 147 Bifidobacterium angulatum 1 species species 522 Bifidobacterium longum 1 0 216816 species 0 638619 389 1 Bifidobacterium actinocoloniiforme species 95 1 1686 0 251 Bifidobacterium catenulatum 2 subspecies 0 630129 1 Bifidobacterium kashiwanohense 156 no rank 2 326 1643818 0 2 Thermobispora 326 0 147067 1 3 genus Thermobispora bispora 1 323 0 2006 species 0 85008 20 Micromonosporales 7583 order 1 8 family 59 1 0 28056 Micromonosporaceae 19 7575 3376 6 Actinoplanes 0 1865 1 38 genus 0 196914 574 1 Actinoplanes friuliensis species no rank 3 2115 0 2626549 0 649831 1 Actinoplanes sp. N902-109 623 species species 746 Actinoplanes sp. SE50 1 0 2033844 species 746 1 Actinoplanes sp. SE50/110 0 134676 1 Actinoplanes missouriensis 649 0 1866 species Micromonospora 4 1624 0 1873 14 1 genus 0 47850 1 Micromonospora aurantiaca 537 species species Verrucosispora maris 1 492 0 1003110 581 1 0 2617518 no rank species Micromonospora sp. L5 1 581 648999 0 genus 6 1 0 168694 788 Salinispora 3 species 0 168695 1 Salinispora tropica 398 168697 0 Salinispora arenicola 1 384 species 0 673534 1727 4 Plantactinospora genus 1 13 0 2631981 3 1714 no rank species 1 Plantactinospora sp. BB1 598 0 2071627 species 592 1 Plantactinospora sp. KBS50 0 2024580 0 2108470 Plantactinospora sp. BC1 1 524 species 1 1 Verrucosispora 84593 0 genus 0 2039638 4746 12 Candidatus Nanopelagicales order 1 17 family 4729 11 0 2162846 1 10 genus 7 Candidatus Planktophila 2422 0 622681 392 Candidatus Planktophila vernalis 1 0 1884907 species 0 1884914 428 Candidatus Planktophila dulcis 1 species 263 1 Candidatus Planktophila sulfonica 0 1884904 species 484 1 Candidatus Planktophila limnetica 0 573600 species 435 Candidatus Planktophila lacus 1 0 1884913 species species 0 1884905 Candidatus Planktophila versatilis 1 410 0 2039639 2307 4 Candidatus Nanopelagicus genus 1 10 0 1884634 748 1 Candidatus Nanopelagicus limnes species 0 1884916 867 1 Candidatus Nanopelagicus abundans species species 682 Candidatus Nanopelagicus hibericus 1 0 1884915 1 32 order 3607 4 Catenulisporales 0 414714 3575 3 Catenulisporaceae 0 414877 1 27 family 3548 Catenulispora 2 0 414878 10 1 genus 0 304895 Catenulispora acidiphila 1 3538 species order 38 1 85013 0 4475 Frankiales 7 1 22 family 6 Frankiaceae 4437 0 74712 1854 0 Frankia 5 4415 genus 7 1 0 1859 Frankia alni 1 2333 species 0 2632575 730 1 no rank 730 1 Frankia sp. EAN1pec 0 298653 species species 1 Frankia casuarinae 734 106370 0 0 298654 611 1 Frankia inefficax species 0 52018 1 273 no rank 273 1 Actinobacteria bacterium IMCC26256 0 1650658 species 21 1 order Streptosporangiales 16 4368 0 85012 3 Thermomonosporaceae 415 0 2012 1 2 family 1 4 genus 413 2 Thermomonospora 2019 0 0 2020 409 Thermomonospora curvata 1 species 8 1 family Nocardiopsaceae 7 1712 0 83676 1 1 genus 164 2 Thermobifida 0 83677 2021 0 1 Thermobifida fusca 163 species 1540 4 Nocardiopsis 0 2013 1 8 genus species Nocardiopsis alba 1 312 0 53437 species 1 Nocardiopsis dassonvillei 738 0 2014 0 280236 482 Nocardiopsis gilva 1 species family 1 6 0 2004 5 Streptosporangiaceae 2220 6 1 genus Streptosporangium 2 957 2000 0 species 951 Streptosporangium roseum 1 0 2001 1257 2 Nonomuraea 83681 0 1 5 genus 1252 1 0 2593643 no rank species Nonomuraea sp. ATCC 55076 1 1252 1909395 0 1 150 order 81524 82 Streptomycetales 0 85011 81374 81 Streptomycetaceae 2062 0 1 216 family 14 1 genus 5810 Kitasatospora 5 0 2063 0 68173 2812 1 Kitasatospora albolonga species Kitasatospora setae 1 1531 2066 0 species species 669 1 Kitasatospora aureofaciens 0 1894 784 1 0 2633591 no rank species 0 2018025 784 Kitasatospora sp. MMS16-BH015 1 0 1883 Streptomyces 75 75348 genus 867 1 species 1 Streptomyces lydicus 1949 47763 0 0 1940 698 Streptomyces albireticuli 1 species species 0 1971 Streptomyces noursei 1 788 2593676 0 24 20132 no rank species 780 1 Streptomyces sp. fd1-xmd 0 1812480 species Streptomyces sp. Mg1 1 789 0 465541 Streptomyces sp. CLI2509 1 664 0 1984801 species 1164 1 Streptomyces sp. P3 2135430 0 species 0 1972846 967 Streptomyces sp. Sge12 1 species 0 444103 756 1 Streptomyces sp. CNQ-509 species 0 1725411 Streptomyces sp. CdTB01 1 959 species species 0 1661694 699 1 Streptomyces sp. Tue 6075 0 1964449 Streptomyces sp. 3211 1 1252 species 519 Streptomyces sp. S8 1 0 1837283 species species 624 Streptomyces sp. TN58 1 0 234612 species 1111 1 Streptomyces sp. M56 0 1495638 0 1649184 671 1 Streptomyces sp. CFMR 7 species 1 Streptomyces sp. CMB-StM0423 920 0 2059884 species species Streptomyces sp. 769 1 1006 0 1262452 species 0 1265601 Streptomyces sp. PAMC 26508 1 459 1168 1 Streptomyces sp. FR-008 0 206662 species 0 1961713 Streptomyces sp. MOE7 1 726 species species 1 Streptomyces sp. SirexAA-E 530 0 862751 573 Streptomyces sp. 4F 1 0 1751294 species species 1684 Streptomyces sp. SAT1 1 0 1849967 0 2094021 1 Streptomyces sp. WAC00288 716 species 0 1841249 1 Streptomyces sp. RTd22 777 species species Streptomyces sp. CCM_MD2014 1 618 0 1561022 species 0 54571 Streptomyces venezuelae 1 1650 species Streptomyces albulus 1 5697 0 68570 1119 Streptomyces alfalfae 1 0 1642299 species 0 553510 Streptomyces gilvosporeus 1 1055 species species 518 Streptomyces cyaneogriseus 1 0 68192 1977 Streptomyces albus 1 0 1888 species 977 Streptomyces lavendulae 1 0 1914 species species 0 285473 590 1 Streptomyces rubrolavendulae species 1697 Streptomyces autolyticus 1 0 75293 species 0 193462 Streptomyces niveus 1 824 species group 2 4529 0 1477431 species 0 42239 728 Streptomyces sampsonii 1 species 0 1902 Streptomyces coelicolor 1 3801 0 29303 1 Streptomyces cattleya 560 species species 0 1916 800 Streptomyces lividans 1 species 0 1901 840 Streptomyces clavuligerus 1 species 0 33903 1 Streptomyces avermitilis 933 882 Streptomyces ambofaciens 1 0 1889 species Streptomyces xiamenensis 1 446 0 408015 species species 0 67267 843 1 Streptomyces alboflavus species 1398 1 Streptomyces formicae 0 1616117 1348 2 0 629295 species group 1 620 0 1482596 species subgroup species Streptomyces griseus 1 620 0 1911 species subgroup 0 1482558 728 1 species 0 1908 1 Streptomyces globisporus 728 1 Streptomyces collinus 675 0 42684 species Streptomyces peucetius 1 513 0 1950 species species 68280 0 1 Streptomyces violaceusniger 927 Streptomyces pluripotens 1 553 0 1355015 species species 2049881 0 596 Streptomyces sp. XZHG99 1 species 0 362257 1016 Streptomyces vietnamensis 1 618 Streptomyces parvulus 1 0 146923 species species Streptomyces sp. S10(2016) 1 710 0 1783515 550 Streptomyces chartreusis 1 0 1969 species 1926 0 771 1 Streptomyces reticuli species species 0 1038928 787 1 Streptomyces xinghaiensis species 724 1 Streptomyces griseochromogenes 0 68214 Streptomyces pristinaespiralis 1 666 38300 0 species 0 1935 1 Streptomyces violaceoruber 568 species 0 1169025 1 Streptomyces pratensis 611 species species Streptomyces hygroscopicus 1 2090 0 1912 species Streptomyces scabiei 1 1033 0 1930 0 164348 1 Streptomyces puniciscabiei 644 species species 1405 1 Streptomyces bingchenggensis 0 379067 species 0 1437453 1 Streptomyces leeuwenhoekii 548 0 68249 1 Streptomyces pactum 1836 species Streptomyces fulvissimus 1 722 68202 0 species species 0 92644 979 Streptomyces malaysiensis 1 1915 0 1709 1 Streptomyces lincolnensis species 1 Streptomyces glaucescens 980 0 1907 species 1 172 order 136 Micrococcales 33553 85006 0 0 145360 3 Sanguibacteraceae 509 family 1 1 1 3 genus 2 Sanguibacter 508 0 60919 Sanguibacter keddieii 1 505 0 60920 species 1 8 family 1683 6 Cellulomonadaceae 0 85016 1 16 genus 5 Cellulomonas 1675 1707 0 2620175 0 1 397 no rank species Cellulomonas sp. PSBB021 1 397 2003551 0 469 1 Cellulomonas flavigena 0 1711 species 1 Cellulomonas fimi 427 0 1708 species 0 11 366 1 Cellulomonas gilvus species 47 1 family 7790 Micrococcaceae 37 0 1268 genus 303 2 0 32207 species Rothia dentocariosa 1 128 0 2047 species 175 1 Rothia mucilaginosa 0 43675 0 596707 2 Sinomonas 336 genus 1 1 species 335 Sinomonas atrocyanea 1 0 37927 genus 43 1 0 1663 4296 Arthrobacter 15 0 235627 12 3394 no rank species 0 1357915 244 Arthrobacter sp. QXT-31 1 433 1 Arthrobacter sp. ERGS1:01 0 1704044 species species 1 Arthrobacter sp. ZXY-2 199 1806905 0 207 1 Arthrobacter sp. LS16 0 1690248 species 0 1771959 1 Arthrobacter sp. ATCC 21022 167 species 0 1652545 Arthrobacter sp. YC-RL1 1 208 species species 0 2079227 Arthrobacter sp. PGP41 1 792 238 1 Arthrobacter sp. FB24 0 290399 species species 1 Arthrobacter sp. PAMC 25486 268 0 1494608 species 0 1849032 269 Arthrobacter sp. U41 1 species 150 1 Arthrobacter sp. Rue61a 0 1118963 1 Arthrobacter sp. YN 219 0 2020486 species species 577 1 Arthrobacter alpinus 0 656366 species 37928 0 Arthrobacter crystallopoietes 1 282 genus 1 185 0 2078575 species 0 1618207 Arthrobacter sp. IHBB 11108 1 185 0 1742989 273 Glutamicibacter 2 genus 6 1 0 256701 267 1 Glutamicibacter arilaitensis species 4 Kocuria 774 57493 0 1 2 genus species 0 72000 Kocuria rhizophila 1 180 species 253 1 Kocuria palustris 0 71999 0 446860 339 1 Kocuria flava species 1742992 0 215 Paenarthrobacter 2 genus 1 1 species 0 43663 Paenarthrobacter aurescens 1 214 0 1742993 784 4 Pseudarthrobacter genus 1 5 species 0 121292 Pseudarthrobacter sulfonivorans 1 236 1 Pseudarthrobacter chlorophenolicus 199 0 85085 species species 344 1 Pseudarthrobacter phenanthrenivorans 0 361575 genus 1 192 0 1868332 0 556325 192 1 Neomicrococcus aestuarii species genus 1 1 0 1269 246 2 Micrococcus species 0 1270 1 Micrococcus luteus 245 genus 0 1645 1 139 species 0 1646 139 Renibacterium salmoninarum 1 family 7 1 0 85020 3638 Dermabacteraceae 10 genus 111 1 0 36739 0 1630135 1 Dermabacter vaginalis 111 species 3 1 genus 221 Devriesea 2 0 472568 species 218 Devriesea agamarum 1 0 472569 3299 6 Brachybacterium 0 43668 1 22 genus no rank 0 2623841 1 402 species 1 Brachybacterium sp. P6-10-X1 402 0 1903186 species 0 43669 371 1 Brachybacterium faecium 1 Brachybacterium sp. VM2412 1836 2017484 0 species 0 2017485 1 Brachybacterium sp. VR2415 349 species 0 1331682 319 1 Brachybacterium ginsengisoli species family 1 15 85017 0 2749 9 Promicromonosporaceae Cellulosimicrobium 3 1137 157920 0 3 1 genus 0 1710 551 Cellulosimicrobium cellulans 1 species no rank 0 2624466 583 1 species 0 1980001 Cellulosimicrobium sp. TH-20 1 583 0 254250 Isoptericola 3 1035 genus 4 1 0 372663 Isoptericola dokdonensis 1 613 species 139208 0 418 Isoptericola variabilis 1 species 0 186188 562 Xylanimonas 2 genus 2 1 186189 0 Xylanimonas cellulosilytica 1 560 species 0 85019 2 Brevibacteriaceae 501 family 1 2 genus 1 499 0 1696 species 499 Brevibacterium linens 1 1703 0 family 1 2 0 145357 6 Dermacoccaceae 900 genus 57499 0 192 1 0 1276 Kytococcus sedentarius 1 192 species genus 1 4 0 57495 2 Dermacoccus 393 0 1274 389 1 Dermacoccus nishinomiyaensis species genus 3 1 0 745364 Luteipulveratus 2 313 species 0 571913 310 1 Luteipulveratus mongoliensis Beutenbergiaceae 3 500 0 125316 2 1 family 11 1 genus Beutenbergia 2 498 0 84756 1 Beutenbergia cavernae 487 0 84757 species 0 85021 1657 9 Intrasporangiaceae family 1 4 1 1 genus 410 2 Intrasporangium 53357 0 species 409 1 Intrasporangium calvum 0 53358 Arsenicicoccus 2 414 0 267408 3 1 genus no rank 0 2663846 411 1 species 0 1658671 411 1 Arsenicicoccus sp. oral taxon 190 genus 15 1 0 53457 Janibacter 2 357 1 Janibacter indicus 342 0 857417 species 472 Serinicoccus 2 265976 0 5 1 genus 0 1758689 467 1 Serinicoccus sp. JLT9 species 124 1 0 85022 family genus 0 43673 124 1 species 0 43674 124 Jonesia denitrificans 1 Microbacteriaceae 46 12947 0 85023 64 1 family 1 4 genus 2 Frondihabitans 1635 0 447237 1 1631 2626248 0 no rank 1 Frondihabitans sp. PAMC 28766 1631 0 1795630 species genus 494 1 0 33877 0 453304 Agromyces aureus 1 494 species 1 405 0 1759331 genus species 0 1619308 1 Cnuibacter physcomitrellae 405 0 33886 3 Rathayibacter 758 genus 1 7 0 33888 286 Rathayibacter tritici 1 species 0 145458 465 1 Rathayibacter toxicus species 0 2034 1063 4 Curtobacterium genus 1 21 species 1 Curtobacterium pusillum 377 0 69373 no rank 2 665 0 257496 347 Curtobacterium sp. MR_MD2014 1 0 1561023 species 0 1905847 318 1 Curtobacterium sp. BH-2-1-1 species genus 4 1 0 337004 224 Microcella 2 220 Microcella alkaliphila 1 0 279828 species 402 3 0 1655488 no rank 0 1655489 402 3 clade genus 3 1 0 529883 Rhodoluna 3 402 species 224 Candidatus Rhodoluna planktonica 1 0 535712 0 529884 175 1 Rhodoluna lacicola species 3 1 genus Pontimonas 2 111 0 1434032 species 108 Pontimonas salivibrio 1 0 1159327 1 3 genus 3 Cryobacterium 581 0 69578 species 670052 0 Cryobacterium arcticum 1 325 no rank 253 1 0 2649013 253 Cryobacterium sp. LW097 1 0 1978566 species 0 33882 14 Microbacterium 4321 genus 1 45 331 1 Microbacterium testaceum 2033 0 species 338 1 Microbacterium hominis 162426 0 species 2609290 0 8 2737 no rank 0 2103230 297 1 Microbacterium sp. str. 'China' species species 0 1938334 306 Microbacterium sp. TPU 3598 1 species 249 1 Microbacterium sp. 1.5R 0 1916917 0 1714373 544 1 Microbacterium sp. No. 7 species 469 Microbacterium sp. BH-3-3-3 1 0 1906742 species species Microbacterium sp. CGR1 1 267 0 1696072 316 1 Microbacterium sp. PAMC 28756 0 1795053 species species 289 1 Microbacterium sp. XT11 0 367477 species 291 1 Microbacterium aurum 0 36805 species 261 1 Microbacterium chocolatum 0 84292 318 Microbacterium paludicola 1 0 300019 species 283 1 518733 0 genus species 0 412690 1 Microterricola viridarii 283 1 2 genus 680 2 Leifsonia 0 110932 species 0 1575 678 Leifsonia xyli 1 genus 22 1 0 1573 Clavibacter 6 1790 1 362 species 5 Clavibacter michiganensis 1768 0 28447 subspecies 0 33014 Clavibacter insidiosus 1 313 subspecies 0 31964 468 1 Clavibacter sepedonicus 0 1874630 Clavibacter capsici 1 324 subspecies 0 31963 301 1 Clavibacter nebraskensis subspecies 0 1705353 1 136 genus 1 Aurantimicrobium minutum 136 0 708131 species 0 577468 120 1 no rank genus 0 2038 1 120 0 2039 1 Tropheryma whipplei 120 species family 0 85018 2 263 genus 1 3 0 1862 263 2 Dermatophilus species 0 1863 260 1 Dermatophilus congolensis 840 6 Acidimicrobiia 0 84992 1 6 class 0 84993 834 5 Acidimicrobiales order 1 18 family 0 2448023 2 550 1 6 genus 550 2 Ilumatobacter 0 682522 0 467094 1 Ilumatobacter coccineus 544 species 2 266 0 84994 family 13 1 genus 266 Acidimicrobium 2 0 53634 species 253 1 Acidimicrobium ferrooxidans 0 53635 0 200795 4440 39 phylum class 6 1 189775 0 460 Thermomicrobia 7 0 85000 3 340 subclass 1 4 order 3 Sphaerobacterales 340 0 85001 suborder 0 255728 2 336 family 1 1 0 85002 2 Sphaerobacteraceae 336 genus 0 2056 335 1 335 Sphaerobacter thermophilus 1 0 2057 species 189776 0 Thermomicrobiales 3 114 order 3 1 family 2 111 0 189777 0 499 2 Thermomicrobium 111 genus 1 2 species 1 Thermomicrobium roseum 109 0 500 668 5 Ardenticatenia 0 1382928 1 2 class 0 1382929 666 4 Ardenticatenales order 1 9 1 6 family 657 3 Ardenticatenaceae 0 1382930 genus 1 4 0 1988031 2 Candidatus Promineofilum 651 species 1 Candidatus Promineofilum breve 647 0 1806508 class 1 1 0 292625 Anaerolineae 7 640 Anaerolineales 6 639 0 292629 5 1 order 0 292628 634 Anaerolineaceae 5 family 12 1 no rank 0 1324991 188 1 species 0 1889813 Anaerolineaceae bacterium oral taxon 439 1 188 genus 1 211 0 233189 species Anaerolinea thermophila 1 211 0 167964 0 2019482 223 Brevefilum 2 genus 1 1 1986204 0 222 1 Brevefilum fermentans species 301297 0 8 Dehalococcoidia 854 class 1 1 4 1 genus Dehalogenimonas 3 204 0 670486 1839801 0 Dehalogenimonas formicexedens 1 120 species species 0 552810 80 1 Dehalogenimonas lykanthroporepellens order 1 1 0 1202465 649 4 Dehalococcoidales 0 1202464 648 3 family genus 1 8 61434 0 648 3 Dehalococcoides 0 61435 1 Dehalococcoides mccartyi 471 species no rank 0 237581 169 1 species Dehalococcoides sp. UCH007 1 169 1522671 0 0 32061 8 Chloroflexia 1458 class 1 9 Chloroflexales 7 1449 0 32064 17 1 order 1508595 0 541 2 suborder family 0 1508635 2 541 120961 0 541 2 genus species 0 120962 297 1 Roseiflexus castenholzii 0 2609473 1 244 no rank 0 357808 Roseiflexus sp. RS-1 1 244 species 891 4 0 1508594 suborder family 891 4 0 1106 genus 1 8 0 1107 4 Chloroflexus 891 species 0 152260 487 Chloroflexus aggregans 1 0 1108 Chloroflexus aurantiacus 2 396 species 198 1 0 480224 198 1 Chloroflexus sp. Y-400-fl strain Caldilineae 4 360 0 475962 4 1 class 356 3 Caldilineales 0 475963 1 5 order 351 2 Caldilineaceae 0 475964 1 8 family 0 233191 343 1 genus 343 Caldilinea aerophila 1 0 133453 species phylum 877 11 0 508458 class 1 2 649775 0 877 11 Synergistia 875 Synergistales 10 649776 0 5 1 order 870 9 Synergistaceae 649777 0 1 4 family 0 508459 1 175 genus 175 Cloacibacillus porcorum 1 0 1197717 species 181 2 Thermovirga 0 336260 1 1 genus 1 Thermovirga lienii 180 0 336261 species 0 81466 2 Aminobacterium 239 genus 1 1 species 1 Aminobacterium colombiense 238 0 81468 genus 148 1 0 49894 species 148 1 Acetomicrobium mobile 0 97477 0 81461 Thermanaerovibrio 2 123 genus 1 1 species 0 81462 1 Thermanaerovibrio acidaminovorans 122 3 272 0 2138240 phylum Coprothermobacteria 3 272 0 2138243 5 1 class order 2 267 0 2138246 family 0 2138247 2 267 0 68335 2 Coprothermobacter 267 genus 1 2 species Coprothermobacter proteolyticus 1 265 0 35786 2833 20 0 57723 phylum 0 204432 2549 17 Acidobacteriia class 1 5 1 20 order 12 Acidobacteriales 2095 0 204433 family 1 7 0 204434 2075 11 Acidobacteriaceae genus 3 1 0 392733 Terriglobus 3 562 species 228 Terriglobus roseus 1 0 392734 0 870903 331 Terriglobus saanensis 1 species genus 1 2 33973 0 2 Acidobacterium 573 0 33075 1 Acidobacterium capsulatum 571 species 940557 0 639 Granulicella 3 genus 13 1 0 940615 Granulicella tundricola 1 371 species species 1 Granulicella mallensis 255 940614 0 genus 6 1 0 658061 294 Candidatus Koribacter 2 species 288 Candidatus Koribacter versatilis 1 0 658062 449 Solibacterales 4 0 332160 2 1 order 3 1 family 447 Solibacteraceae 3 0 332161 genus 16 1 0 332162 444 Candidatus Solibacter 2 species Candidatus Solibacter usitatus 1 428 0 332163 0 1562566 Blastocatellia 3 284 class 1 1 1 3 genus 283 2 Chloracidobacterium 458032 0 458033 0 1 Chloracidobacterium thermophilum 280 species no rank 3 940 0 2323 clade 0 1783234 3 940 1 79 0 95818 phylum 0 1895827 1 79 no rank species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 79 0 2056494 clade 2 861 95901 0 class 2 861 0 2497643 0 2497644 2 861 order family 861 2 0 2497645 861 Candidatus Babela 2 0 1551504 5 1 genus 0 673862 Candidatus Babela massiliensis 1 856 species phylum 9 5068 0 200930 0 68337 5068 9 Deferribacteres class 1 14 191393 0 Deferribacterales 8 5054 order 9 1 0 191394 Deferribacteraceae 7 5045 family 15 1 842 1 0 545865 genus 1 Calditerrivibrio nitroreducens 842 0 477976 species 1 1237 0 2351 genus 1 Flexistipes sinusarabici 1237 0 2352 species 7 1 genus Denitrovibrio 2 522 0 117999 species 0 118000 515 Denitrovibrio acetiphilus 1 0 53572 2429 2 Deferribacter genus 1 10 species 0 197162 2419 1 Deferribacter desulfuricans phylum 32066 0 23 38921 0 203490 23 Fusobacteriia 38921 class 1 43 0 203491 38878 22 Fusobacteriales order 1 61 family 26 1 0 203492 Fusobacteriaceae 11 30561 113 1 genus Fusobacterium 9 29415 0 848 1 Fusobacterium hwasookii 3303 0 1583098 species 1 Fusobacterium ulcerans 1659 0 861 species 1613 1 Fusobacterium mortiferum 0 850 species species 1 Fusobacterium periodonticum 5558 0 860 species 0 849 1 Fusobacterium gonidiaformans 1021 species 11988 1 Fusobacterium nucleatum 0 851 species 0 859 Fusobacterium necrophorum 1 582 1 Fusobacterium varium 3578 0 856 species genus 0 167639 1 1120 species 0 167642 Ilyobacter polytropus 1 1120 1 17 family 10 Leptotrichiaceae 8256 0 1129771 1022 1 0 32068 genus 0 826 1022 Sebaldella termitidis 1 species 1 1552 0 34104 genus species 0 34105 1552 1 Streptobacillus moniliformis 0 168808 983 Sneathia 2 genus 2 1 species 0 187101 Sneathia amnii 1 981 1 21 genus 5 Leptotrichia 4682 32067 0 species 1 Leptotrichia buccalis 1136 0 40542 3 3525 0 2633022 no rank 712357 0 Leptotrichia sp. oral taxon 212 1 1026 species species 0 712368 1215 1 Leptotrichia sp. oral taxon 498 1284 Leptotrichia sp. oral taxon 847 1 0 1785996 species phylum 42 14237 0 200918 1 38 class 42 Thermotogae 14237 0 188708 order 18 1 0 2419 8615 Thermotogales 28 family 1 4 0 188709 3030 17 Thermotogaceae 11 Thermotoga 1512 0 2335 1 26 genus 0 2336 Thermotoga maritima 1 144 species species 1 Thermotoga petrophila 101 0 93929 no rank 0 2631113 4 469 1157947 0 Thermotoga sp. Cell2 1 106 species species 105 1 Thermotoga sp. RQ2 0 126740 species 1 Thermotoga sp. 2812B 112 0 1157948 species 0 126738 146 Thermotoga sp. RQ7 1 species 65 1 Thermotoga caldifontis 0 1508419 110 Thermotoga naphthophila 1 0 93930 species 2337 0 Thermotoga neapolitana 1 136 species 0 1508420 1 Thermotoga profunda 461 species 1 19 genus 1514 5 Pseudothermotoga 0 1643951 species 72 1 Pseudothermotoga hypogea 0 57487 1 Pseudothermotoga elfii 534 0 38322 species species 0 119394 1 Pseudothermotoga thermarum 359 530 Pseudothermotoga lettingae 1 0 177758 species 10 Fervidobacteriaceae 5567 1643950 0 1 12 family 3982 5 Thermosipho 0 2420 1 11 genus no rank 2 1569 0 2676525 species 0 1437364 814 1 Thermosipho sp. 1070 0 1462747 Thermosipho sp. 1063 1 755 species 972 Thermosipho melanesiensis 1 0 46541 species species 0 2421 1 Thermosipho africanus 1430 4 Fervidobacterium 1573 0 2422 1 2 genus 758 Fervidobacterium nodosum 1 0 2424 species species 0 93466 Fervidobacterium pennivorans 1 477 336 Fervidobacterium islandicum 1 2423 0 species 7 Petrotogales 4760 0 1643947 1 5 order 4755 6 1643949 0 family 0 28236 752 1 genus species 0 69499 752 1 Petrotoga mobilis genus 1 15 0 160798 2888 3 Marinitoga no rank 0 2640159 1 1407 species 1407 Marinitoga sp. 1137 1 0 1545835 species 0 149715 1466 Marinitoga piezophila 1 genus 1 2 0 1511648 1115 2 Defluviitoga 1006576 0 Defluviitoga tunisiensis 1 1113 species order 1 2 0 1643946 6 Kosmotogales 824 Kosmotogaceae 5 822 0 1643948 1 1 family 3 Kosmotoga 612 0 651456 1 2 genus species 215 Kosmotoga olearia 1 0 651457 species Kosmotoga pacifica 1 395 0 1330330 0 1184396 1 209 genus species 1 Mesotoga prima 209 0 1184387 1 370 phylum 2040 Proteobacteria 1595120 0 1224 class 1 1197 0 1236 900 Gammaproteobacteria 597859 0 1240482 2746 Orbales 6 order 11 1 5 Orbaceae 2735 0 1240483 1 17 family Frischella 2 1210 0 1335631 6 1 genus species 0 1267021 Frischella perrara 1 1204 genus 5 1 0 1193503 Gilliamella 2 1508 1503 Gilliamella apicola 1 0 1196095 species order 1 1 0 135615 551 4 Cardiobacteriales 0 868 3 Cardiobacteriaceae 550 family 1 10 540 2 Dichelobacter 0 869 1 4 genus species 0 870 Dichelobacter nodosus 1 536 10676 30 Cellvibrionales 0 1706369 1 24 order 4783 Cellvibrionaceae 13 0 1706371 28 1 family genus 1 4 0 2036021 1336 2 Agarilytica species 0 1737490 1332 Agarilytica rhodophyticola 1 1 2 genus 2 Teredinibacter 595 0 2425 species 1 Teredinibacter turnerae 593 0 2426 genus 1 3 0 316625 2 Saccharophagus 805 species 0 86304 802 1 Saccharophagus degradans 0 447467 364 Simiduia 2 genus 2 1 species Simiduia agarivorans 1 362 0 447471 0 10 4 Cellvibrio 1655 genus 1 9 541 Cellvibrio japonicus 1 0 155077 species no rank 0 2624793 1105 2 560 1 Cellvibrio sp. PSBB023 0 1945512 species Cellvibrio sp. PSBB006 1 545 0 1987723 species family 15 1 0 1706372 Halieaceae 4 1347 26 1 genus Halioglobus 3 1332 1217416 0 0 930806 Halioglobus pacificus 1 680 species species 626 1 Halioglobus japonicus 930805 0 7 Spongiibacteraceae 2730 0 1706375 1 36 family 658 Zhongshania 2 0 1434050 13 1 genus species 0 1470434 645 Zhongshania aliphaticivorans 1 0 630749 Spongiibacter 2 649 genus 3 1 no rank 646 1 0 2631504 species 0 1620392 646 1 Spongiibacter sp. IMCC21906 1 2 genus 2 Oceanicoccus 1387 0 1084558 1385 Oceanicoccus sagamiensis 1 716816 0 species family 1 3 0 1706373 5 Microbulbiferaceae 1792 1 36 genus 1789 4 Microbulbifer 0 48073 1 Microbulbifer aggregans 596 0 1769779 species 0 252514 1 Microbulbifer thermotolerans 549 species Microbulbifer agarilyticus 1 608 0 260552 species 411 1 order 152144 Enterobacterales 250 0 91347 0 1903416 Budviciaceae 3 438 family 2 1 genus 1 3 0 82984 436 2 Pragia species 1 Pragia fontium 433 0 82985 1 51 family 12751 22 Morganellaceae 0 1903414 0 29487 2054 4 Photorhabdus genus 1 26 species 0 29488 716 Photorhabdus luminescens 1 787 1 Photorhabdus asymbiotica 0 291112 species species 1 Photorhabdus temperata 525 0 574560 genus 1 8 0 586 2590 4 Providencia species 1 Providencia stuartii 1100 588 0 0 587 950 1 Providencia rettgeri species species 1 Providencia alcalifaciens 532 0 126385 6 1 genus Morganella 2 407 0 581 species 401 Morganella morganii 1 582 0 626 0 2770 6 Xenorhabdus genus 1 21 species 0 351671 396 1 Xenorhabdus doucetiae 628 0 Xenorhabdus nematophila 1 403 species 0 351679 1 Xenorhabdus hominickii 572 species species 0 40576 1 Xenorhabdus bovienii 891 species 487 1 Xenorhabdus poinarii 0 40577 genus 1 22 0 583 3 Proteus 3304 species 0 584 2149 1 Proteus mirabilis species 1 Proteus vulgaris 1133 0 585 9 1 genus 1575 Arsenophonus 2 0 637 0 634113 1 Arsenophonus symbiont of Lipoptena fortisetosa 1566 species 0 1903412 10666 14 Hafniaceae family 1 16 0 568 1179 Hafnia 3 genus 14 1 0 569 850 Hafnia alvei 1 species 0 2621980 1 315 no rank species 315 1 Hafnia sp. CBA7124 0 1848580 0 82982 319 Obesumbacterium 2 genus 3 1 species 1 Obesumbacterium proteus 316 0 82983 genus 1 90 0 635 9152 8 Edwardsiella 361 Edwardsiella piscicida 1 0 1263550 species 0 636 6484 1 Edwardsiella tarda species 0 93378 213 Edwardsiella hoshinae 1 species 586 1 Edwardsiella anguillarum 0 1821960 species 2 992 0 2676541 no rank species 0 1578828 1 Edwardsiella sp. EA181011 546 1650654 0 446 1 Edwardsiella sp. LADL05-105 species species 0 67780 426 1 Edwardsiella ictaluri 1903410 0 8133 20 Pectobacteriaceae family 1 28 0 204037 Dickeya 6 2094 genus 20 1 species 0 204038 1 Dickeya dadantii 252 898 1 Dickeya zeae 0 204042 species 0 1778540 1 Dickeya fangzhongdai 235 species 1089444 0 457 1 Dickeya solani species species Dickeya dianthicola 1 232 0 204039 2927 6 Pectobacterium 0 122277 1 52 genus 354 Pectobacterium wasabiae 1 0 55208 species species 1133 1 Pectobacterium parmentieri 0 1905730 species 282 Pectobacterium polaris 1 0 2042057 Pectobacterium atrosepticum 1 274 0 29471 species 832 1 Pectobacterium carotovorum 554 0 species 0 71655 470 Brenneria 2 genus 8 1 species 0 1109412 1 Brenneria goodwinii 462 genus 51 1 0 84565 Sodalis 5 2614 0 63612 1 Sodalis glossinidius 287 species species 0 1486991 1 Candidatus Sodalis pierantonius 475 0 1239307 Sodalis praecaptivus 1 439 species 1362 1 Sodalis endosymbiont of Henestaris halophilus 0 1929246 species 0 1903411 24470 Yersiniaceae 38 family 26 1 3 1 genus Chania 2 267 0 1745211 0 1639108 Chania multitudinisentens 1 264 species 1 121 genus 14582 13 Yersinia 0 629 species 620 1 Yersinia ruckeri 0 29486 0 263819 448 Yersinia aleksiciae 1 species species 0 28152 433 1 Yersinia kristensenii species 1 Yersinia rohdei 473 0 29485 no rank 0 2653513 368 1 368 Yersinia sp. FDAARGOS_228 1 0 1839800 species 0 630 1727 Yersinia enterocolitica 1 species species Yersinia frederiksenii 1 1103 0 29484 1 Yersinia aldovae 563 0 29483 species 0 1649845 3 8307 species group 0 632 2215 1 Yersinia pestis species 0 633 1395 Yersinia pseudotuberculosis 1 species 4697 1 Yersinia similis 0 367190 species 0 631 419 1 Yersinia intermedia species genus 162 1 0 613 Serratia 16 8478 species 743 Serratia plymuthica 1 0 82996 Serratia proteamaculans 1 195 0 28151 species 0 47917 1 Serratia fonticola 715 species 0 614 373 1 Serratia liquefaciens species 2831 1 Serratia marcescens 0 615 species species 319 1 Serratia rubidaea 0 61652 Serratia ficaria 1 325 0 61651 species no rank 0 2647522 2815 8 species 247 Serratia sp. AS13 1 0 768493 0 1758196 270 Serratia sp. SSNIH1 1 species species 0 1327989 351 1 Serratia sp. FS14 species 1 Serratia sp. FGI94 260 0 671990 species 0 768490 1 Serratia sp. AS12 247 357 Serratia sp. ATCC 39006 1 104623 0 species species 0 2033438 291 Serratia sp. MYb239 1 0 488142 792 1 Serratia sp. SCBI species genus 2 1 0 929812 Gibbsiella 2 284 species 0 929813 282 1 Gibbsiella quercinecans genus 14 1 34037 0 Rahnella 4 833 no rank 0 2635087 2 577 1 Rahnella sp. Y9602 249 741091 0 species 0 1805933 328 1 Rouxiella sp. ERMR1:05 species species 34038 0 1 Rahnella aquatilis 242 no rank 0 451511 2 464 genus 2 1 0 702 Plesiomonas 2 464 species 0 703 Plesiomonas shigelloides 1 462 family 1 75 0 1903409 26961 28 Erwiniaceae genus 26 1 0 32199 Buchnera 2 16041 species 0 9 16015 Buchnera aphidicola 1 genus 2 785 2100764 0 665914 0 287 Pantoea gaviniae 1 species species 0 665913 1 Pantoea calida 498 1 36 genus 2 Wigglesworthia 2879 0 51228 2843 Wigglesworthia glossinidia 1 0 51229 species 1 19 genus 8 Erwinia 2167 0 551 species Erwinia gerundensis 1 289 0 1619313 species 0 338565 229 Erwinia tasmaniensis 1 species 0 1922217 517 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 79967 Erwinia pyrifoliae 1 202 species species Erwinia amylovora 1 190 0 552 no rank 216 1 0 2622719 species 1 Erwinia sp. Ejp617 216 0 215689 0 182337 Erwinia billingiae 1 505 species 0 53335 4673 11 Pantoea genus 1 111 3 881 0 2630326 no rank species 0 592316 1 Pantoea sp. At-9b 312 species 0 1484157 319 1 Pantoea sp. PSNIH2 species 0 1484158 1 Pantoea sp. PSNIH1 250 species group 1 458 0 1654067 species 1 Pantoea agglomerans 458 0 549 587 Pantoea ananatis 1 0 553 species species 382 1 Pantoea stewartii 0 66269 0 1891675 1 Pantoea alhagi 193 species species Candidatus Pantoea carbekii 1 1050 0 1235990 species Pantoea vagans 1 808 0 470934 species 0 1076550 203 1 Pantoea rwandensis genus 3 1 0 82986 341 Tatumella 2 species 0 53336 Tatumella citrea 1 338 0 543 67850 Enterobacteriaceae 122 family 373 1 5 Escherichia 11550 0 561 1 18 genus species 192 Escherichia fergusonii 1 564 0 species 1499973 0 Escherichia marmotae 1 198 species 10603 1 Escherichia coli 0 562 208962 0 Escherichia albertii 1 539 species genus 39 1 0 413496 1658 Cronobacter 8 species 183 1 Cronobacter malonaticus 0 413503 species 0 28141 Cronobacter sakazakii 1 371 species 1 Cronobacter universalis 178 0 535744 1 Cronobacter dublinensis 249 0 413497 species 243 Cronobacter condimenti 1 0 1163710 species 0 413501 198 1 Cronobacter muytjensii species species 0 413502 197 1 Cronobacter turicensis genus 3 1 0 1330545 692 Lelliottia 4 154 Lelliottia nimipressuralis 1 69220 0 species 0 61646 Lelliottia amnigena 1 393 species 0 1907578 1 Lelliottia jeotgali 142 species 1 7 genus 429 4 Shigella 0 620 0 622 Shigella dysenteriae 1 215 species species Shigella flexneri 1 114 0 623 no rank 0 2629414 1 93 species 93 Shigella sp. PAMC 28760 1 0 1813821 genus 1 7 0 1330546 783 3 Pluralibacter 493 1 Pluralibacter gergoviae 0 61647 species 283 1 [Enterobacter] lignolyticus 1334193 0 species 11225 21 0 191675 no rank 0 84563 21 11225 clade 1 2 genus 2 Candidatus Tachikawaea 1618 0 1682492 0 1410383 Candidatus Tachikawaea gelatinosa 1 1616 species clade 0 199891 1 523 species 1835721 0 523 1 secondary endosymbiont of Trabutina mannipara genus 0 1906659 220 1 species 0 1778263 220 1 Candidatus Hoaglandella endobia clade 4 1723 0 146507 1 2 genus 2 Candidatus Hamiltonella 692 0 568987 species 0 138072 1 Candidatus Hamiltonella defensa 690 288 secondary endosymbiont of Ctenarytaina eucalypti 1 0 1199245 species secondary endosymbiont of Heteropsylla cubana 1 743 134287 0 species 84564 0 7 5698 clade 5698 Candidatus Blochmannia 7 203804 0 65 1 genus species Candidatus Blochmannia vafer 1 1105 0 251535 1729 2 0 711328 no rank Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 895 0 1505597 species 0 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 834 species 852 1 Candidatus Blochmannia pennsylvanicus 101534 0 species species 1073 1 Candidatus Blochmannia floridanus 0 203907 species Candidatus Blochmannia chromaiodes 1 874 251542 0 0 1906657 155 Candidatus Doolittlea 2 genus 1 1 species Candidatus Doolittlea endobia 1 154 0 1778262 1 1 genus 676 2 Candidatus Mikella 0 1906660 species Candidatus Mikella endobia 1 675 0 1778264 0 1906661 2 Candidatus Gullanella 612 genus 1 6 606 Candidatus Gullanella endobia 1 0 1070130 species 0 544 14 Citrobacter 4788 genus 1 172 species 0 67824 Citrobacter farmeri 1 964 species 0 545 244 1 Citrobacter koseri 350 2 0 2644389 no rank 162 Citrobacter sp. CFNIH10 1 1920110 0 species 0 1702170 188 1 Citrobacter sp. FDAARGOS_156 species 0 35703 1 Citrobacter amalonaticus 513 species species group 7 2374 0 1344959 0 2077147 185 1 Citrobacter freundii complex sp. CFNIH3 species species 394 1 Citrobacter werkmanii 0 67827 0 546 1 Citrobacter freundii 945 species 0 2077149 146 Citrobacter freundii complex sp. CFNIH9 1 species species Citrobacter braakii 1 360 0 57706 species 0 2077148 Citrobacter freundii complex sp. CFNIH4 1 171 0 2066049 173 1 Citrobacter freundii complex sp. CFNIH2 species 0 67825 171 1 Citrobacter rodentium species genus 10 1 0 590 Salmonella 3 7934 species Salmonella bongori 1 911 0 54736 species 7013 1 Salmonella enterica 0 28901 genus 1 29 0 83654 4 Leclercia 783 497 2 0 2627398 no rank 0 1920116 236 1 Leclercia sp. LSNIH3 species 0 1920114 261 Leclercia sp. LSNIH1 1 species 0 83655 1 Leclercia adecarboxylata 257 species genus 1 3 0 160674 1271 3 Raoultella 1006 1 Raoultella ornithinolytica 0 54291 species 262 Raoultella planticola 1 0 575 species genus 0 1048757 1 188 Candidatus Moranella endobia 1 188 0 1048758 species genus 1 242 0 579 species 0 61648 1 Kluyvera intermedia 242 genus 8 1 0 401618 870 Candidatus Riesia 2 0 401619 Candidatus Riesia pediculicola 1 862 species 702 Cedecea 2 0 158483 2 1 genus species 0 158822 1 Cedecea neteri 700 no rank 5 2662 0 36866 species 0 1920109 Enterobacteriaceae bacterium ENNIH2 1 216 species 1 Enterobacteriaceae bacterium ENNIH3 204 0 1920128 0 693444 214 Enterobacteriaceae bacterium strain FGI 57 1 species species Plautia stali symbiont 1 1863 0 891974 Enterobacteriaceae bacterium ENNIH1 1 165 0 2066051 species 1 6 genus 1109 2 Candidatus Ishikawaella 0 409304 168169 0 Candidatus Ishikawaella capsulata 1 1103 species 0 570 Klebsiella 10 13283 genus 166 1 0 2026240 Klebsiella quasivariicola 1 238 species species 0 573 5629 1 Klebsiella pneumoniae 0 1463165 1 Klebsiella quasipneumoniae 359 species species 628 1 Klebsiella variicola 0 244366 836 1 Klebsiella michiganensis 0 1134687 species no rank 0 2608929 2 551 285 Klebsiella sp. LTGPAF-6F 1 0 1905288 species species 266 1 Klebsiella sp. M5al 0 1934254 3392 1 Klebsiella aerogenes 0 548 species species 0 571 1 Klebsiella oxytoca 1484 genus 9 1 0 1330547 Kosakonia 5 1198 species 0 1158459 212 1 Kosakonia sacchari 219 1 Kosakonia cowanii 0 208223 species species 500 1 Kosakonia radicincitans 0 283686 species 258 1 Kosakonia oryzae 0 497725 22 Enterobacter 5928 0 547 1 182 genus 0 354276 12 4433 species group species 119 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 0 1812935 species 1 Enterobacter asburiae 513 0 61645 species 0 550 1853 1 Enterobacter cloacae species 0 299767 160 1 Enterobacter ludwigii 0 69218 Enterobacter cancerogenus 1 147 species no rank 0 2757714 3 414 0 1915310 Enterobacter cloacae complex sp. ECNIH7 1 137 species species 176 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 2077137 101 1 Enterobacter cloacae complex bacterium 0 2027919 species species 133 Enterobacter kobei 1 0 208224 1094 3 Enterobacter hormaechei 0 158836 1 771 species Enterobacter xiangfangensis 1 145 0 1296536 subspecies subspecies 178 Enterobacter cloacae complex 'Hoffmann cluster III' 1 1812934 0 no rank 0 2608935 9 1313 1 Enterobacter sp. SA187 150 0 1914861 species 1692238 0 Enterobacter sp. FY-07 1 170 species 0 399742 161 1 Enterobacter sp. 638 species 0 1166130 218 1 Enterobacter sp. R4-368 species 180 1 Enterobacter sp. CRENT-193 0 2051905 species 1 Enterobacter sp. ODB01 142 0 1827481 species species 1 Enterobacter sp. HK169 95 0 1868135 species 99 1 Enterobacter sp. E20 0 1560339 0 1977566 98 1 Enterobacter sp. Crenshaw species Shimwellia 2 182 0 1335483 1 1 genus 0 563 Shimwellia blattae 1 181 species 46604 Xanthomonadales 52 0 135614 195 1 order family 1 23 0 1775411 3185 13 Rhodanobacteraceae 0 242605 298 1 genus species 0 242606 298 1 Luteibacter rhizovicinus 0 75309 Rhodanobacter 2 596 genus 6 1 0 666685 590 1 Rhodanobacter denitrificans species 0 231454 1101 4 Dyella genus 1 15 species 407 Dyella thiooxydans 1 0 445710 0 231455 1 Dyella japonica 415 species Dyella jiangningensis 1 264 0 1379159 species 1 285 0 2233801 genus 0 2021234 1 Xanthomonadales bacterium D13 285 species genus 6 1 0 323413 627 Dokdonella 2 species 323415 0 Dokdonella koreensis 1 621 0 70411 2 Frateuria 255 genus 1 3 252 Frateuria aurantia 1 0 81475 species family 1 327 0 32033 43224 38 Xanthomonadaceae 0 2370 3665 1 genus 2371 0 Xylella fastidiosa 1 3665 species 39 1 genus 6446 Lysobacter 5 0 68 species 1 Lysobacter capsici 1816 0 435897 0 262324 1 Lysobacter gummosus 1051 species Lysobacter antibioticus 1 2916 0 84531 species species 0 69 624 1 Lysobacter enzymogenes 13 1 genus 1091 Pseudoxanthomonas 3 0 83618 species Pseudoxanthomonas spadix 1 307 0 415229 771 1 Pseudoxanthomonas suwonensis 314722 0 species 1 133 genus 9 Stenotrophomonas 11405 0 40323 0 196198 3242 4 no rank species 1189 1 Stenotrophomonas sp. MYb57 0 1827305 species Stenotrophomonas sp. KCTC 12332 1 648 0 1793721 species 337 1 Stenotrophomonas sp. LM091 0 1904944 species 0 2005046 1 Stenotrophomonas sp. WZN-1 1068 species group 1 6186 0 995085 0 40324 6186 Stenotrophomonas maltophilia 1 species species 1 Stenotrophomonas rhizophila 417 0 216778 618 1 Stenotrophomonas nitritireducens 83617 0 species 0 128780 809 Stenotrophomonas acidaminiphila 1 species 0 83614 2 Luteimonas 289 genus 1 3 species 2006110 0 286 Luteimonas sp. 100111 1 338 0 20001 17 Xanthomonas genus 1 262 species 0 1985254 Xanthomonas phaseoli 1 434 species 0 53413 307 1 Xanthomonas axonopodis 0 343 1 Xanthomonas translucens 1765 species Xanthomonas euvesicatoria 1 563 0 456327 species Xanthomonas fragariae 1 897 0 48664 species species group 2 5062 0 643453 species 1 Xanthomonas fuscans 974 0 366648 4088 Xanthomonas citri 1 0 346 species species 29447 0 456 1 Xanthomonas albilineans species 3770 Xanthomonas oryzae 1 347 0 Xanthomonas alfalfae 1 360 366650 0 species species 0 56459 285 Xanthomonas vasicola 1 species 737 1 Xanthomonas vesicatoria 0 56460 0 56458 Xanthomonas sacchari 1 539 species species 0 339 1 Xanthomonas campestris 3391 species 620 Xanthomonas perforans 1 0 442694 0 56454 Xanthomonas hortorum 1 553 species 0 135619 Oceanospirillales 72 27943 order 87 1 family 34 1 0 135620 Oceanospirillaceae 13 6558 1 10 genus 2 Bacterioplanes 828 1537406 0 species 0 1249553 818 Bacterioplanes sanyensis 1 776 Thalassolituus 2 0 187492 4 1 genus 0 187493 1 Thalassolituus oleivorans 772 species 1 1 genus 2 Marinobacterium 1005 0 48075 species 1004 1 Marinobacterium aestuarii 0 1821621 0 28253 4 Marinomonas 3008 genus 1 16 species 1 Marinomonas mediterranea 808 0 119864 0 196814 1346 1 no rank 1346 1 Marinomonas sp. MWYL1 0 400668 species species Marinomonas posidonica 1 838 0 936476 genus 1 4 0 188907 907 2 Oleispira species Oleispira antarctica 1 903 0 188908 Saccharospirillaceae 5 1591 0 255527 4 1 family 5 1 genus Gynuella 2 696 0 1445504 1445505 0 1 Gynuella sunshinyii 691 species Reinekea 2 891 0 230494 1 1 genus species 1336806 0 Reinekea forsetii 1 890 224379 0 3 Hahellaceae 540 family 1 3 genus 8 1 0 158481 Hahella 2 537 Hahella chejuensis 1 529 0 158327 species family 31 1 191033 0 Oleiphilaceae 3 950 1 7 genus 919 2 Oleiphilus 0 141450 species 912 1 Oleiphilus messinensis 0 141451 1 7 family 2899 6 Kangiellaceae 0 1920240 genus 1 92 0 261963 5 Kangiella 2892 672 1 Kangiella sediminilitoris 0 1144748 species 809 Kangiella geojedonensis 1 914150 0 species 622 Kangiella koreensis 1 0 261964 species species 697 Kangiella profundi 1 0 1561924 family 67 1 0 28256 Halomonadaceae 32 11982 0 114403 3288 5 no rank 0 114185 1 624 genus species 114186 0 624 1 Candidatus Carsonella ruddii 2 Candidatus Portiera 1776 0 235572 1 16 genus species 0 91844 Candidatus Portiera aleyrodidarum 1 1760 3 1 genus 888 Candidatus Evansia 2 0 1495768 1 Candidatus Evansia muelleri 885 0 1495769 species 105 1 genus Halomonas 15 6290 0 2745 species 475662 0 1 Halomonas beimenensis 558 species 1 Halomonas aestuarii 397 0 1897729 1 Halomonas chromatireducens 298 0 507626 species species Halomonas huangheensis 1 658 0 1178482 species 0 115561 428 Halomonas hydrothermalis 1 3531 8 0 2609666 no rank species 0 1118153 340 Halomonas sp. GFAJ-1 1 2136172 0 1 Halomonas sp. SF2003 498 species 0 1971364 Halomonas sp. GT 1 420 species 0 1610576 490 Halomonas sp. R57-5 1 species 0 1949203 Halomonas sp. 'Soap Lake #6' 1 460 species 1 Halomonas sp. 1513 386 0 1883416 species species 1 Halomonas sp. 'Soap Lake #7' 462 0 1962264 0 1504981 475 Halomonas sp. KO116 1 species species 0 213554 Halomonas campaniensis 1 315 genus 1 2 0 376488 2 Halotalea 365 species 0 376489 Halotalea alkalilenta 1 363 1 12 genus 739 3 Kushneria 0 504090 species 0 698828 1 Kushneria konosiri 451 1 Kushneria marisflavi 276 0 157779 species Cobetia 2 564 0 204286 3 1 genus 561 Cobetia marina 1 0 28258 species 3 1 genus Salinicola 2 370 0 404432 0 1771309 367 Salinicola tamaricis 1 species 3 1 genus 299 Chromohalobacter 2 0 42054 296 1 Chromohalobacter salexigens 158080 0 species 0 224372 3336 Alcanivoracaceae 9 family 10 1 0 2025617 2 Ketobacter 745 genus 1 16 0 1917421 729 Ketobacter alkanivorans 1 species 0 59753 2581 Alcanivorax 6 genus 99 1 no rank 501 1 0 2638842 501 1 Alcanivorax sp. NBRC 101098 0 1113728 species species 0 1094342 452 1 Alcanivorax xenomutans species 0 1306787 Alcanivorax pacificus 1 478 species Alcanivorax borkumensis 1 564 59754 0 487 1 Alcanivorax dieselolei 0 285091 species order 20 1 0 135618 3928 Methylococcales 13 0 403 3908 12 Methylococcaceae family 1 16 385 Methylovulum 2 0 762296 3 1 genus 1 Methylovulum psychrotolerans 382 0 1704499 species 265 Methylococcus 2 0 413 1 1 genus 1 Methylococcus capsulatus 264 0 414 species 1 5 genus 2 Methylomicrobium 684 0 39773 species 679 1 Methylomicrobium alcaliphilum 0 271065 0 416 2558 Methylomonas 5 genus 145 1 species 0 1538553 Methylomonas denitrificans 1 1240 species 366 Methylomonas koyamae 1 702114 0 no rank 418 1 0 2608980 1 Methylomonas sp. DH-1 418 0 1727196 species species 389 Methylomonas methanica 1 421 0 62 1 order Aeromonadales 29 10585 0 135624 40 1 family 10523 Aeromonadaceae 28 0 84642 225143 0 984 3 Oceanisphaera genus 1 26 species Oceanisphaera profunda 1 426 0 1416627 0 1903694 Oceanisphaera sp. AMac2203 1 532 species genus 2 1 0 347533 450 Zobellella 2 species Zobellella denitrificans 1 448 0 347534 0 642 8343 Aeromonas 18 genus 277 1 species 0 645 Aeromonas salmonicida 1 1460 0 948519 Aeromonas rivipollensis 1 222 species species 0 648 Aeromonas caviae 1 174 species 976 Aeromonas veronii 1 0 654 Aeromonas media 1 248 0 651 species species Aeromonas aquatica 1 331 0 558964 0 652 Aeromonas schubertii 1 268 species 0 644 1800 1 Aeromonas hydrophila species 0 196024 1 Aeromonas dhakensis 268 species 0 257493 2319 8 no rank species 178 1 Aeromonas sp. ASNIH7 0 1920107 species 0 2033032 1 Aeromonas sp. CA23 368 species 268 1 Aeromonas sp. ASNIH2 0 1636607 378 1 Aeromonas sp. ASNIH1 0 1636606 species species 0 2033033 Aeromonas sp. CU5 1 256 0 1636608 192 1 Aeromonas sp. ASNIH3 species 0 1758179 283 Aeromonas sp. ASNIH5 1 species species Aeromonas sp. ASNIH4 1 396 0 1636609 genus 1 2 0 129577 2 Oceanimonas 405 0 2636315 1 403 no rank species 0 511062 403 Oceanimonas sp. GK1 1 301 2 Tolumonas 0 43947 1 2 genus species 299 1 Tolumonas auensis 0 43948 order 1 10 0 1775403 364 4 Nevskiales 5 Sinobacteraceae 1 0 568386 family 2 349 0 2689614 family 5 1 genus 349 Steroidobacter 2 0 469322 344 Steroidobacter denitrificans 1 0 465721 species 16103 50 Chromatiales 135613 0 1 114 order family 6 1 0 1676141 Wenzhouxiangellaceae 3 541 Wenzhouxiangella 2 535 0 1676142 3 1 genus species 0 1579979 1 Wenzhouxiangella marina 532 4 Halothiobacillaceae 506 255526 0 1 3 family genus 27 1 109262 0 Halothiobacillus 3 503 237 1 Halothiobacillus neapolitanus 927 0 species no rank 0 2636392 1 239 1 Halothiobacillus sp. LS2 239 0 1860122 species Granulosicoccaceae 3 1138 449719 0 11 1 family 0 437504 2 Granulosicoccus 1127 genus 1 44 species 0 437505 1083 1 Granulosicoccus antarcticus no rank 2 406 0 451214 0 1273155 2 Thiohalobacter 406 genus 1 13 0 585455 393 1 Thiohalobacter thiocyanaticus species 1 4 family 392 3 Woeseiaceae 0 1738654 388 2 Woeseia 0 1738655 1 2 genus species 0 1548547 386 Woeseia oceani 1 49 1 family Ectothiorhodospiraceae 16 4406 0 72276 genus 0 1051 1 420 no rank 420 1 0 2684909 0 1442136 420 1 Ectothiorhodospira sp. BSL-9 species 1 4 genus 3 Spiribacter 556 0 1335745 0 1335746 267 1 Spiribacter salinus species species 1 Spiribacter curvatus 285 0 1335757 genus 0 1765964 652 1 0 160660 652 1 Acidihalobacter prosperus species genus 52 1 0 106633 2060 Thioalkalivibrio 6 0 108010 1 Thioalkalivibrio paradoxus 387 species 250 1 Thioalkalivibrio versutus 0 106634 species species 0 186931 Thioalkalivibrio nitratireducens 1 385 702 Thioalkalivibrio sulfidiphilus 1 0 1033854 species 1 284 0 2621013 no rank species 284 Thioalkalivibrio sp. K90mix 1 0 396595 1 4 genus 2 Halorhodospira 299 0 85108 species 0 1053 295 Halorhodospira halophila 1 1 4 genus 370 2 Alkalilimnicola 0 133193 species 0 351052 1 Alkalilimnicola ehrlichii 366 50 1 family 8600 Chromatiaceae 18 0 1046 0 85076 Marichromatium 2 519 genus 7 1 512 Marichromatium purpuratum 1 0 37487 species 0 1227 4 Nitrosococcus 2230 genus 1 7 0 133539 329 Nitrosococcus halophilus 1 species species 0 473531 1475 1 Nitrosococcus watsonii species 1 Nitrosococcus oceani 419 0 1229 4 1 genus 999 Candidatus Nitrosoglobus 2 1980513 0 1630141 0 995 1 Candidatus Nitrosoglobus terrae species 0 82569 411 1 no rank 411 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 1978339 species genus 1 1 0 156885 448 Thioflavicoccus 2 species 80679 0 1 Thioflavicoccus mobilis 447 6 1 genus 463 Thiocystis 2 13724 0 species Thiocystis violascens 1 457 73141 0 0 53392 3132 Thiodictyon 2 genus 40 1 0 1166950 3092 Candidatus Thiodictyon syntrophicum 1 species 0 85072 2 Allochromatium 348 genus 1 4 0 1049 344 Allochromatium vinosum 1 species 51431 Vibrionales 43 0 135623 44 1 order family 163 1 0 641 Vibrionaceae 42 51387 7 1 genus 2921 Paraphotobacterium 2 0 2042066 species 1 Paraphotobacterium marinum 2914 0 1755811 0 657 4 Photobacterium 13831 genus 1 5 12461 1 Photobacterium damselae 0 38293 species species 0 74109 Photobacterium profundum 1 976 0 1295392 1 Photobacterium gaetbulicola 389 species 1 333 0 246861 genus species 0 673 Grimontia hollisae 1 333 4180 Aliivibrio 4 0 511678 28 1 genus species 1 Aliivibrio fischeri 1252 0 668 species 0 40269 910 1 Aliivibrio salmonicida species 1 Aliivibrio wodanis 1990 0 80852 444 1 genus Vibrio 30 29959 0 662 species Vibrio gazogenes 1 830 0 687 species 0 1435069 556 Vibrio tritonius 1 no rank 2614977 0 795 2 Vibrio sp. 2521-89 1 282 0 2014742 species species 0 1116375 1 Vibrio sp. EJY3 513 species 1222 1 Vibrio tapetis 0 52443 1 Vibrio mimicus 593 0 674 species 0 45658 1511 1 Vibrio scophthalmi species 0 212663 Vibrio tasmaniensis 1 1326 species 1 Vibrio qinghaiensis 522 2025808 0 species species group 0 717610 10 11777 species 0 663 Vibrio alginolyticus 1 1873 species 1 Vibrio campbellii 2471 0 680 species 2400 1 Vibrio parahaemolyticus 0 670 species 0 766224 Vibrio jasicida 1 345 691 0 1233 Vibrio natriegens 1 species 1048 Vibrio harveyi 1 0 669 species Vibrio owensii 1 722 0 696485 species 0 2315253 1225 2 species subgroup 150340 0 1 Vibrio antiquarius 356 species species 0 50719 1 Vibrio diabolicus 869 460 Vibrio rotiferianus 1 0 190895 species 0 1534743 Vibrio hyugaensis 1 684 species Vibrio anguillarum 1 1373 0 55601 species species 1 Vibrio cholerae 807 0 666 species 0 28173 1 Vibrio nigripulchritudo 487 0 29494 680 1 Vibrio furnissii species species 1 Vibrio coralliilyticus 1511 0 190893 1 1274 0 1891919 species group 0 29498 1274 Vibrio tubiashii 1 species species 535 1 Vibrio breoganii 0 553239 676 0 Vibrio fluvialis 1 438 species 0 672 Vibrio vulnificus 1 2594 species 0 135622 82331 Alteromonadales 105 order 206 1 14 1 family 25527 Pseudoalteromonadaceae 25 0 267888 25513 24 Pseudoalteromonas 0 53246 1 561 genus 1 Pseudoalteromonas spongiae 1123 0 298657 species 748 Pseudoalteromonas agarivorans 1 0 176102 species 0 43658 Pseudoalteromonas rubra 1 551 species 0 267375 1 Pseudoalteromonas marina 789 species species 0 1348114 1 Pseudoalteromonas piratica 946 Pseudoalteromonas tetraodonis 1 834 0 43659 species no rank 0 194690 7903 5 species Pseudoalteromonas sp. NC201 1 4077 0 1514074 species 0 1720343 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv 975 0 283699 1 Pseudoalteromonas sp. Bsw20308 1062 species 0 1761891 Pseudoalteromonas sp. 13-15 1 848 species species 0 234831 941 1 Pseudoalteromonas sp. SM9913 247523 0 Pseudoalteromonas aliena 1 1075 species 987 Pseudoalteromonas luteoviolacea 1 0 43657 species species 0 166935 1063 Pseudoalteromonas translucida 1 1008 1 Pseudoalteromonas haloplanktis 228 0 species 682 Pseudoalteromonas piscicida 1 0 43662 species species Pseudoalteromonas espejiana 1 765 0 28107 species 0 288 1 Pseudoalteromonas atlantica 1613 0 152297 1 Pseudoalteromonas issachenkonii 818 species 985 Pseudoalteromonas nigrifaciens 1 0 28109 species 1025 1 Pseudoalteromonas arctica 0 394751 species species 0 314281 1234 Pseudoalteromonas tunicata 1 0 161398 Pseudoalteromonas phenolica 1 803 species 3 1 family Psychromonadaceae 4 3080 0 267894 0 67572 3077 3 Psychromonas genus 1 12 species 0 357794 1764 1 Psychromonas ingrahamii 1 1301 0 2614957 no rank species 1301 1 Psychromonas sp. CNPT3 0 314282 1 21 family 9 Colwelliaceae 9701 0 267889 1346 2 Thalassotalea 0 1518149 1 5 genus species 1341 1 Thalassotalea crassostreae 0 1763536 49 1 genus 8334 Colwellia 6 0 28228 0 1967665 1732 1 Colwellia beringensis species 196834 0 3 4872 no rank 0 58049 1462 1 Colwellia sp. MT41 species 0 1816219 1 Colwellia sp. PAMC 21821 1711 species species 1699 Colwellia sp. PAMC 20917 1 0 1816218 species 0 28229 1681 1 Colwellia psychrerythraea Moritellaceae 3 1312 267891 0 21 1 family 2 Moritella 1291 0 58050 1 3 genus species 1288 1 Moritella viscosa 0 80854 0 267893 Idiomarinaceae 6 1644 family 2 1 genus 33 1 135575 0 1642 Idiomarina 5 0 135577 1 Idiomarina loihiensis 434 species 0 2614829 2 770 no rank species 0 2055892 378 Idiomarina sp. X4 1 Idiomarina sp. OT37-5b 1 392 0 2100422 species 405 1 Idiomarina piscisalsi 0 1096243 species family 1 52 0 72275 29 Alteromonadaceae 20122 2742 0 4675 Marinobacter 10 genus 108 1 species 0 2743 471 Marinobacter hydrocarbonoclasticus 1 Marinobacter psychrophilus 1 458 0 330734 species 0 83889 3 1194 no rank species 403 Marinobacter sp. LQ44 1 0 1749259 species 326 Marinobacter sp. CP1 1 0 1671721 species 0 490759 465 1 Marinobacter sp. BSs20148 species 0 1420917 1566 Marinobacter salarius 1 0 1874317 318 1 Marinobacter salinus species species 0 1420916 Marinobacter similis 1 263 297 1 Marinobacter adhaerens 0 1033846 species genus 0 261825 1 581 0 680279 581 Agarivorans gilvus 1 species 0 226 10 Alteromonas 10249 genus 1 112 no rank 3 2157 0 2614992 0 1917158 702 1 Alteromonas sp. RW2A1 species 688 1 Alteromonas sp. MB-3u-76 0 2058133 species species 0 1777491 Alteromonas sp. Mac1 1 767 species 0 233316 1195 Alteromonas stellipolaris 1 species Alteromonas naphthalenivorans 1 1292 0 715451 species 0 314275 Alteromonas mediterranea 1 1762 species 1 Alteromonas addita 927 287094 0 697 Alteromonas australica 1 0 589873 species species 0 28108 2107 1 Alteromonas macleodii genus 3 1 0 89404 Glaciecola 3 1956 no rank 1 918 0 2618684 species 0 983545 918 Glaciecola sp. 4H-3-7+YE-5 1 Glaciecola nitratireducens 1 1035 0 300231 species Lacimicrobium 2 670 0 1751872 1 1 genus species 0 1526571 Lacimicrobium alkaliphilum 1 669 1 9 genus 2 Paraglaciecola 1939 0 1621534 species 0 326544 1 Paraglaciecola psychrophila 1930 0 267890 25 Shewanellaceae 20487 family 1 26 1 238 genus 24 Shewanella 20461 0 22 species 0 93973 1 Shewanella japonica 1477 species 230 1 Shewanella amazonensis 0 60478 0 60217 Shewanella violacea 1 2313 species 1 Shewanella bicestrii 438 0 2018305 species 1 Shewanella sediminis 847 0 271097 species species 0 70864 530 1 Shewanella pealeana 0 62322 2065 1 Shewanella baltica species 0 60961 Shewanella woodyi 1 1087 species species 287 Shewanella marisflavi 1 0 260364 1 Shewanella loihica 326 0 359303 species species 1249 Shewanella frigidimarina 1 0 56812 species 0 271098 Shewanella halifaxensis 1 2777 585 Shewanella putrefaciens 1 24 0 species species Shewanella denitrificans 1 681 0 192073 species 1 Shewanella oneidensis 377 0 70863 0 196818 2972 6 no rank 484 Shewanella sp. ANA-3 1 0 94122 species species 0 60480 378 Shewanella sp. MR-4 1 species 1 Shewanella sp. WE21 464 0 2029986 1 Shewanella sp. MR-7 520 0 60481 species species 0 351745 524 1 Shewanella sp. W3-18-1 0 2059264 602 Shewanella sp. Pdp11 1 species species 0 225848 Shewanella psychrophila 1 1362 0 404011 1 Shewanella piezotolerans 620 species 1 1 family Ferrimonadaceae 3 252 0 267892 0 44011 Ferrimonas 2 251 genus 1 1 44012 0 1 Ferrimonas balearica 250 species 6 1 order 559 Immundisolibacterales 4 0 1934945 family 1 6 0 1934946 553 3 Immundisolibacteraceae 0 1934947 547 Immundisolibacter 2 genus 8 1 species 539 1 Immundisolibacter cernigliae 0 1810504 6 Acidiferrobacterales 1064 1692040 0 1 6 order 5 Acidiferrobacteraceae 1058 0 1692041 1 11 family genus 1 5 0 1744881 360 2 Sulfuricaulis species 355 1 Sulfuricaulis limicola 0 1620215 2 1 genus 687 Sulfurifustis 2 0 1692042 species 685 1 Sulfurifustis variabilis 0 1675686 40483 Thiotrichales 34 0 72273 30 1 order 1 34 family 28623 15 Francisellaceae 0 34064 0 1869285 1507 Allofrancisella 2 genus 6 1 1 Allofrancisella guangzhouensis 1501 0 594679 species 27082 12 Francisella 0 262 1 379 genus 0 28110 1 Francisella philomiragia 3522 species 1349 1 Francisella persica 0 954 species 0 573569 1 Francisella sp. TX077308 1347 species species Francisella sp. TX077310 1 1781 0 573570 0 1542390 Francisella sp. CA97-1460 1 2181 species 4939 Francisella halioticida 1 0 549298 species 2396 1 Francisella noatunensis 0 657445 species 4438 Francisella tularensis 1 0 263 species 2 3455 0 2610885 no rank species 0 1547445 Francisella sp. FSC1006 1 1745 0 475375 Francisella sp. MA067296 1 1710 species species 0 622488 1 Francisella hispaniensis 1295 2664 Thiotrichaceae 4 0 135617 31 1 family 0 40751 2 Thioploca 1284 genus 1 2 1282 Thioploca ingrica 1 0 40754 species genus 1 1349 1021 0 species 1349 Beggiatoa leptomitoformis 1 0 288004 0 135616 14 Piscirickettsiaceae 9166 family 1 34 Piscirickettsia 2 1840 0 1237 4 1 genus 1836 1 Piscirickettsia salmonis 0 1238 species 0 28884 657 Hydrogenovibrio 2 genus 1 1 0 39765 656 1 Hydrogenovibrio crunogenus species 1 12 genus 3 Methylophaga 1438 0 40222 species 783 Methylophaga nitratireducenticrescens 1 0 754476 0 754477 643 1 Methylophaga frappieri species 933 0 809 2 genus Thiomicrospira aerophila 1 435 0 92245 species 0 147268 374 Thiomicrospira cyclica 1 species 0 34067 4 Cycloclasticus 4388 genus 1 74 1548 1 Cycloclasticus zancles 0 1329899 species 2 2766 0 2621467 no rank species Cycloclasticus sp. PY97N 1 1361 0 728003 0 385025 Cycloclasticus sp. P1 1 1405 species order 21 1 0 135625 18175 Pasteurellales 33 18154 32 Pasteurellaceae 0 712 1 124 family 1 35 genus 6472 6 Haemophilus 0 724 species 0 727 3569 1 Haemophilus influenzae species 571 Haemophilus parainfluenzae 1 729 0 [Haemophilus] ducreyi 1 1418 730 0 species species 367 Haemophilus pittmaniae 1 0 249188 1 512 0 2609962 no rank 0 712310 1 Haemophilus sp. oral taxon 036 512 species genus 1 19 0 713 1526 5 Actinobacillus species 0 67854 233 1 Actinobacillus succinogenes 0 715 Actinobacillus pleuropneumoniae 1 451 species species 0 716 413 Actinobacillus suis 1 species 718 0 1 Actinobacillus equuli 410 genus 10 1 0 75984 Mannheimia 4 1896 85404 0 764 Mannheimia varigena 1 species species 0 75985 520 Mannheimia haemolytica 1 1 602 0 2645054 no rank 0 1432056 1 Mannheimia sp. USDA-ARS-USMARC-1261 602 species 256 Basfia 2 0 697331 6 1 genus species 250 1 [Mannheimia] succiniciproducens 0 157673 476528 0 Bibersteinia 2 774 genus 2 1 species 0 47735 1 Bibersteinia trehalosi 772 genus 1 2 0 416916 3 Aggregatibacter 1068 476 1 Aggregatibacter aphrophilus 0 732 species 0 714 590 Aggregatibacter actinomycetemcomitans 1 species 1144 Histophilus 2 0 214906 5 1 genus species 0 731 1139 Histophilus somni 1 5 1 genus 1057 Glaesserella 2 0 2094023 species 0 738 1 Glaesserella parasuis 1052 1 20 genus 3173 3 Pasteurella 0 745 Pasteurella multocida 1 2359 0 747 species 794 Pasteurella dagmatis 1 0 754 species genus 2 1 0 155493 664 Gallibacterium 2 species 0 750 662 Gallibacterium anatis 1 21600 Legionellales 21 0 118969 13 1 order 0 444 18699 15 Legionellaceae family 1 43 104 1 genus Legionella 12 17774 0 445 0 2005262 Legionella endosymbiont of Polyplax serrata 1 1728 species species 0 66969 Legionella waltersii 1 1274 species 0 1867846 1126 Legionella clemsonensis 1 1 Legionella spiritensis 540 0 452 species 0 28087 Legionella sainthelensi 1 1644 species 1137 Legionella hackeliae 1 0 449 species 0 29423 939 Legionella oakridgensis 1 species species 1 Legionella pneumophila 5315 0 446 Legionella lansingensis 1 1029 0 45067 species species 96230 0 1 Legionella fallonii 1376 1562 Legionella longbeachae 1 0 450 species 0 465 882 2 Tatlockia genus 1 8 0 451 874 Tatlockia micdadei 1 species family 29 1 0 118968 2888 Coxiellaceae 5 0 776 1774 3 Coxiella genus 1 11 no rank 819 1 2676648 0 species 1 Coxiella endosymbiont of Amblyomma americanum 819 0 325775 0 777 1 Coxiella burnetii 944 species no rank 0 134284 1085 1 species 0 1592897 1085 1 Coxiella-like endosymbiont no rank 118884 0 11576 12 1 1891 0 198346 clade species 186490 0 1 Candidatus Baumannia cicadellinicola 1891 0 349742 482 2 Sedimenticola genus 1 3 species 479 1 Sedimenticola thiotaurini 0 1543721 Candidatus Thioglobus 3 3838 655184 0 55 1 genus species 0 1427364 2594 1 Candidatus Thioglobus singularis 0 1705394 1189 Candidatus Thioglobus autotrophicus 1 species clade 3 4353 0 32036 species 0 410330 Calyptogena okutanii thioautotrophic gill symbiont 1 1749 species 0 113267 1146 Bathymodiolus septemdierum thioautotrophic gill symbiont 1 genus 0 1541743 1 1458 0 386487 Candidatus Ruthia magnifica 1 1458 species 1 607 0 1524249 genus species 0 1249552 Pseudohongiella spirulinae 1 607 3 1 genus 405 Thiolapillus 2 0 1608298 0 1076588 Thiolapillus brandeum 1 402 species order 1 281 0 72274 96876 129 Pseudomonadales 71 1 family 40465 Moraxellaceae 42 468 0 1 31 genus 3370 5 Moraxella 0 475 0 34062 1388 1 Moraxella osloensis species species 1 Moraxella catarrhalis 940 0 480 species 0 386891 Moraxella bovoculi 1 678 0 29433 Moraxella ovis 1 333 species Acinetobacter 25 29767 0 469 401 1 genus species 0 108981 1 Acinetobacter schindleri 723 species 0 1148157 Acinetobacter oleivorans 1 964 species 1 Acinetobacter equi 1484 0 1324350 species 0 1789224 814 1 Acinetobacter larvae species 0 29430 1086 1 Acinetobacter haemolyticus species group 5 13489 0 909768 0 48296 4359 Acinetobacter pittii 1 species 1785128 0 Acinetobacter lactucae 1 1062 species species 0 470 1 Acinetobacter baumannii 4541 Acinetobacter calcoaceticus 1 2042 0 471 species Acinetobacter nosocomialis 1 1485 0 106654 species 596 Acinetobacter radioresistens 1 0 40216 species no rank 196816 0 7 5175 1 Acinetobacter sp. TTH0-4 771 0 1646498 species species 643 1 Acinetobacter sp. NCu2D-2 0 1608473 species 0 1808001 1 Acinetobacter sp. LoGeW2-3 582 Acinetobacter sp. TGL-Y2 1 788 0 1407071 species 1 Acinetobacter sp. SWBY1 716 0 2079596 species species 0 1636603 1 Acinetobacter sp. ACNIH1 865 810 Acinetobacter sp. ACNIH2 1 0 1758189 species 0 756892 1 Acinetobacter indicus 433 species species 0 202950 1 832 832 1 Acinetobacter sp. ADP1 0 62977 strain species 40215 0 1 Acinetobacter junii 1250 species 777 Acinetobacter soli 1 0 487316 species 0 106648 1085 Acinetobacter bereziniae 1 species 658 Acinetobacter johnsonii 1 0 40214 genus 1 130 0 497 7257 11 Psychrobacter 334543 0 1 Psychrobacter arcticus 503 species no rank 0 196806 4119 6 0 1028416 641 1 Psychrobacter sp. DAB_AL43B species species 1062 1 Psychrobacter sp. PRwf-1 0 349106 species 0 571800 1 Psychrobacter sp. G 566 species Psychrobacter sp. P11G5 1 685 0 1699624 species 522 Psychrobacter sp. AntiMn-1 1 0 1720344 Psychrobacter sp. P2G3 1 643 0 1699622 species species 0 330922 Psychrobacter cryohalolentis 1 566 651 1 Psychrobacter urativorans 0 45610 species Psychrobacter alimentarius 1 1288 0 261164 species 56130 Pseudomonadaceae 86 0 135621 336 1 family 1 1 genus 639 2 Oblitimonas 0 1849530 species 1 Oblitimonas alkaliphila 638 0 1697053 1127 1 genus Pseudomonas 80 53864 0 286 species 782 Pseudomonas frederiksbergensis 1 0 104087 0 136841 7862 6 species group 412 Pseudomonas resinovorans 1 0 53412 species 3574 Pseudomonas aeruginosa 1 0 287 species 1713 1 Pseudomonas mendocina 0 300 species 1 942 0 1232139 species subgroup 942 1 Pseudomonas furukawaii 1149133 0 species species 0 43263 Pseudomonas alcaligenes 1 343 0 53408 878 Pseudomonas citronellolis 1 species species 756 Pseudomonas koreensis 1 0 198620 species 0 1583341 Pseudomonas cerasi 1 685 species 1 Pseudomonas brassicacearum 619 0 930166 1 Pseudomonas antarctica 240 219572 0 species species 0 1853130 873 1 Pseudomonas silesiensis 136846 0 2 2852 species group Pseudomonas balearica 1 364 0 74829 species 0 578833 2488 1 species subgroup species 0 316 2488 Pseudomonas stutzeri 1 species group 8 5247 0 136849 2526 1 0 251695 species subgroup species 2526 1 Pseudomonas syringae 0 317 species 0 36746 226 Pseudomonas cichorii 1 species 236 1 Pseudomonas viridiflava 0 33069 no rank 0 2775504 1 278 278 1 Pseudomonas sp. Lz4W 0 1206777 species Pseudomonas syringae group genomosp. 3 1 772 0 251701 species species 282 1 Pseudomonas avellanae 0 46257 927 2 251698 0 species subgroup 1 Pseudomonas savastanoi 531 0 29438 species species 0 47877 Pseudomonas amygdali 1 396 species 0 237610 1 Pseudomonas psychrotolerans 453 species group 0 136845 8112 6 species Pseudomonas putida 1 4555 303 0 0 47885 362 Pseudomonas oryzihabitans 1 species 1 Pseudomonas monteilii 840 76759 0 species species 332 1 Pseudomonas plecoglossicida 0 70775 Pseudomonas fulva 1 479 0 47880 species 0 78327 Pseudomonas mosselii 1 1544 species 196821 0 10310 30 no rank 221 1 Pseudomonas sp. FDAARGOS_380 0 2018067 species species 0 1659194 350 Pseudomonas sp. GR 6-02 1 species 0 1028989 297 Pseudomonas sp. StFLB209 1 Pseudomonas sp. JY-Q 1 238 0 1338689 species species 229 Pseudomonas sp. LG1D9 1 2083054 0 species 333 Pseudomonas sp. Os17 1 1500686 0 species 0 1898684 1 Pseudomonas sp. LPH1 283 species 0 1636610 1 Pseudomonas sp. PONIH3 324 0 1294143 308 Pseudomonas sp. ATCC 13867 1 species 1534110 0 399 Pseudomonas sp. DR 5-09 1 species 1259844 0 Pseudomonas sp. FGI182 1 251 species species 0 1500687 298 1 Pseudomonas sp. St29 256 1 Pseudomonas sp. HLS-6 0 2049589 species species 1 Pseudomonas sp. CC6-YY-74 653 0 1930532 species 0 1611770 330 Pseudomonas sp. MRSN12121 1 species 1106 1 Pseudomonas sp. TKP 0 1415630 species 411 Pseudomonas sp. M30-35 1 0 1981174 species 0 2069256 1 Pseudomonas sp. XWY-1 298 species 231 Pseudomonas sp. MYb193 1 0 1827300 species 0 2083051 1 Pseudomonas sp. SWI6 277 species 0 2083053 Pseudomonas sp. SWI44 1 213 Pseudomonas sp. VLB120 1 205 0 69328 species species 1 Pseudomonas sp. S-6-2 438 0 1931241 species 542 1 Pseudomonas sp. URMO17WK12:I11 0 1283291 species Pseudomonas sp. LH1G9 1 252 0 2083055 309 1 Pseudomonas sp. TCU-HL1 0 1856685 species 1 Pseudomonas sp. CCOS 191 283 0 1649877 species species 0 2083052 1 Pseudomonas sp. SWI36 330 Pseudomonas sp. UW4 1 240 0 1207075 species 0 2067572 405 1 Pseudomonas sp. NC02 species species 1 Pseudomonas cremoricolorata 240 0 157783 Pseudomonas alcaliphila 1 295 0 101564 species 0 312306 235 Pseudomonas entomophila 1 species 193 1 Pseudomonas lurida 0 244566 species species 0 1788301 1 Pseudomonas versuta 225 Pseudomonas knackmussii 1 411 0 65741 species 2 2393 0 136842 species group species 1 Pseudomonas chlororaphis 1869 0 587753 0 296 1 Pseudomonas fragi 524 species 1 Pseudomonas parafulva 566 0 157782 species 0 136843 9 8940 species group Pseudomonas azotoformans 1 1121 0 47878 species species 0 380021 521 1 Pseudomonas protegens 730 1 Pseudomonas trivialis 0 200450 species species 0 200451 Pseudomonas poae 1 247 species 294 Pseudomonas veronii 1 0 76761 294 0 5291 1 Pseudomonas fluorescens species 223 1 Pseudomonas corrugata 0 47879 species 0 76758 1 Pseudomonas orientalis 251 species species 0 75612 Pseudomonas mandelii 1 262 211 Pseudomonas alkylphenolica 1 0 237609 species species 1 Pseudomonas rhizosphaerae 237 0 216142 0 351 3 1291 subfamily genus 10 1 0 352 Azotobacter 3 1291 species 386 Azotobacter vinelandii 1 0 354 species 895 1 Azotobacter chroococcum 0 353 no rank 2 923 0 33811 species 372 1 endosymbiont of unidentified scaly snail isolate Monju 0 1248727 species gamma proteobacterium HdN1 1 551 0 83406 class 1 6 0 1553900 12 Oligoflexia 3941 0 213481 1562 Bdellovibrionales 5 order 7 1 family 7 1 0 213483 1555 Bdellovibrionaceae 4 genus 1 1 0 958 Bdellovibrio 3 1548 species 0 959 1056 1 Bdellovibrio bacteriovorus 0 453816 1 Bdellovibrio exovorus 491 species 6 Bacteriovoracales 2373 0 2024979 1 5 order 1725 Halobacteriovoraceae 3 0 1652132 7 1 family 1 4 genus 2 Halobacteriovorax 1718 0 1652133 species 0 97084 1 Halobacteriovorax marinus 1714 Bacteriovoracaceae 2 643 0 263369 3 1 family 640 1 0 146784 genus species 640 Bacteriovorax stolpii 1 0 960 1 1 class 6 Zetaproteobacteria 486 0 580370 order 1 11 0 580371 5 Mariprofundales 485 0 580372 474 4 Mariprofundaceae family 1 2 0 377315 Mariprofundus 3 472 genus 3 1 species 0 1921087 219 Mariprofundus ferrinatatus 1 1 Mariprofundus aestuarium 250 0 1921086 species 0 28211 Alphaproteobacteria 566 665171 class 395 1 980 Parvularculales 4 0 255473 6 1 order 1 8 family 974 3 Parvularculaceae 0 255474 20 1 genus 966 Parvularcula 2 0 208215 946 Parvularcula bermudensis 1 0 208216 species 0 204441 66 Rhodospirillales 31390 order 1 216 19225 Rhodospirillaceae 30 41295 0 197 1 family 0 1081 Rhodospirillum 3 1572 genus 19 1 species 0 1085 730 1 Rhodospirillum rubrum species Rhodospirillum centenum 1 823 0 34018 Candidatus Endolissoclinum 2 3515 0 1263978 1 1 genus 3514 1 Candidatus Endolissoclinum faulkneri 0 1263979 species genus 1 126 13134 0 3455 5 Magnetospirillum 905 Magnetospirillum gryphiswaldense 1 0 55518 species Magnetospirillum magneticum 1 812 0 84159 species 2 1612 0 2617991 no rank species 866 Magnetospirillum sp. ME-1 1 0 1639348 species 0 1663591 Magnetospirillum sp. XM-1 1 746 Nitrospirillum 2 825 0 1543705 8 1 genus 817 Nitrospirillum amazonense 1 0 28077 species 4387 5 Azospirillum 0 191 1 96 genus 1226968 0 476 Azospirillum humicireducens 1 species 192 0 1374 1 Azospirillum brasilense species species 1501 1 Azospirillum lipoferum 0 193 0 528244 940 Azospirillum thiophilum 1 species genus 0 1612157 516 1 species 0 1084 Pararhodospirillum photometricum 1 516 0 168934 3 Thalassospira 2073 genus 1 35 species 0 2048283 978 1 Thalassospira sp. CSC3H3 species 1 Thalassospira xiamenensis 1060 0 220697 608 Niveispirillum 2 1543704 0 8 1 genus 1612173 0 Niveispirillum cyanobacteriorum 1 600 species Tistrella 2 979 0 171436 9 1 genus 1 Tistrella mobilis 970 0 171437 species 1 4 genus 2 Haematospirillum 437 1804663 0 species 433 1 Haematospirillum jordaniae 0 1549855 0 1182780 661 2 Magnetospira genus 1 3 0 2685734 658 1 no rank species 658 Magnetospira sp. QH-2 1 1288970 0 1 119 family 35 Acetobacteraceae 11949 0 433 891 Granulibacter 2 0 364409 8 1 genus species 0 364410 Granulibacter bethesdensis 1 883 genus 1 11 0 89583 508 2 Gluconacetobacter species 497 1 Gluconacetobacter diazotrophicus 0 33996 3 Roseomonas 1300 0 125216 1 15 genus no rank 730 1 0 2617492 species 0 2018065 730 Roseomonas sp. FDAARGOS_362 1 species 0 257708 Roseomonas gilardii 1 555 1 5 genus 2 Kozakia 329 0 153497 324 1 Kozakia baliensis 0 153496 species 0 522 Acidiphilium 3 1030 genus 20 1 0 62140 518 Acidiphilium multivorum 1 species 1 Acidiphilium cryptum 492 0 524 species 5 Komagataeibacter 1661 1434011 0 1 54 genus 0 28448 503 Komagataeibacter xylinus 1 species species Komagataeibacter medellinensis 1 361 0 1177712 species 265960 0 495 Komagataeibacter nataicola 1 species Komagataeibacter europaeus 1 248 33995 0 8 Acetobacter 4403 0 434 1 56 genus 659 Acetobacter tropicalis 1 0 104102 species 1 Acetobacter persici 462 0 1076596 species subgenus 151157 0 1 340 species 340 Acetobacter aceti 1 435 0 0 65959 337 1 Acetobacter pomorum species species 0 1633874 1 Acetobacter oryzifermentans 355 438 0 1766 1 Acetobacter pasteurianus species species 0 446692 428 1 Acetobacter senegalensis 1 1 genus 331 2 Parasaccharibacter 0 1602345 species Parasaccharibacter apium 1 330 0 1510841 genus 4 1 0 91914 Asaia 2 317 313 Asaia bogorensis 1 0 91915 species 320496 0 240 2 Neoasaia genus 1 2 species 0 320497 238 1 Neoasaia chiangmaiensis 0 441 820 3 Gluconobacter genus 1 12 species 0 318683 1 Gluconobacter albidus 275 0 442 Gluconobacter oxydans 1 533 species 43 1 order Pelagibacterales 9 361664 0 54526 0 2045213 Candidatus Fonsibacter 2 19687 genus 22 1 species 0 1925548 19665 1 Candidatus Fonsibacter ubiquis 103 1 family 341934 Pelagibacteraceae 6 0 1655514 186265 2 0 1655516 no rank 1 alpha proteobacterium HIMB5 165392 0 859653 species species 0 744985 20873 1 alpha proteobacterium HIMB59 genus 1 40 0 198251 3 Candidatus Pelagibacter 155566 no rank 0 2647897 20697 1 species 20697 Candidatus Pelagibacter sp. IMCC9063 1 0 1002672 0 198252 134829 1 Candidatus Pelagibacter ubique species 1 9 order 9 Holosporales 3854 0 1921002 1777752 0 3 Candidatus Paracaedibacteraceae 1174 family 1 5 1169 Candidatus Paracaedibacter 2 0 1521255 16 1 genus species Candidatus Paracaedibacter acanthamoebae 1 1153 0 91604 family 6 1 0 2100208 1458 Caedimonadaceae 3 1452 Candidatus Nucleicultrix 2 0 1509243 6 1 genus 1 Candidatus Nucleicultrix amoebiphila 1446 0 1509244 species 1213 Holosporaceae 2 0 44746 1 1 family 1212 1 204454 0 no rank species 1212 1 endosymbiont of Acanthamoeba sp. UWC8 0 86106 1 164 order 36626 82 Sphingomonadales 0 204457 0 335929 9209 22 Erythrobacteraceae family 1 104 genus 0 2800681 1679 2 species 751 Erythrobacter gangjinensis 1 0 502682 928 Erythrobacter atlanticus 1 0 1648404 species 25 1 genus Croceicoccus 3 936 0 1295327 species 0 1348774 1 Croceicoccus naphthovorans 453 species 458 Croceicoccus marinus 1 0 450378 0 2800682 467 1 genus species 467 Altererythrobacter namhicola 1 0 645517 0 361177 4 Altererythrobacter 1161 genus 1 125 Altererythrobacter ishigakiensis 1 327 476157 0 species species Altererythrobacter epoxidivorans 1 366 0 361183 species 0 1267766 1 Altererythrobacter atlanticus 343 genus 0 2800686 2 612 species 0 1982042 Altererythrobacter mangrovi 1 310 species 0 692370 1 Altererythrobacter dongtanensis 302 genus 2 1538 0 1855416 0 266951 1 Erythrobacter seohaensis 353 species species 0 192812 Erythrobacter flavus 1 1185 6 2404 0 2800788 no rank 1 124 genus 1493 3 Erythrobacter 0 1041 species Porphyrobacter neustonensis 1 372 0 1112 0 39960 997 Erythrobacter litoralis 1 species Porphyrobacter 3 911 0 1111 61 1 genus 850 2 0 2683265 no rank species 459 1 Porphyrobacter sp. LM 6 0 1896196 species 0 2023229 1 Porphyrobacter HT-58-2 391 genus 308 1 0 2800685 species Altererythrobacter marensis 1 308 0 543877 0 41297 59 Sphingomonadaceae 27253 family 1 230 1 13 genus 471 2 Blastomonas 0 150203 no rank 458 1 2626550 0 species 0 1842535 1 Blastomonas sp. RAC04 458 genus 1 102 0 165697 4857 10 Sphingopyxis 0 2614943 2316 4 no rank species 0 1866325 430 1 Sphingopyxis sp. MG 0 292913 Sphingopyxis sp. 113P3 1 332 species 1357916 0 Sphingopyxis sp. QXT-31 1 536 species 0 1913578 1018 1 Sphingopyxis sp. LPB0140 species species 0 33052 449 1 Sphingopyxis terrae 0 1515612 434 Sphingopyxis fribergensis 1 species 467 1 Sphingopyxis granuli 0 267128 species Sphingopyxis macrogoltabida 1 729 0 33050 species species 1 Sphingopyxis alaskensis 360 0 117207 genus 0 2685927 498 1 species 1 Sphingomonas sp. JJ-A5 498 0 1921510 4 1 genus Rhizorhabdus 2 510 1649486 0 species 506 Rhizorhabdus dicambivorans 1 0 1850238 genus 4 1 0 72173 466 Citromicrobium 2 no rank 462 1 0 2630544 species 0 1634516 1 Citromicrobium sp. JL477 462 0 13687 Sphingomonas 15 10095 genus 171 1 0 160791 2 Sphingomonas wittichii 1295 species 1 667 0 1283312 628 Sphingomonas sp. DC-6 1 strain 0 93064 397 1 Sphingomonas koreensis species no rank 5707 6 0 196159 3726 Sphingomonas sp. LK11 1 0 1390395 species 0 1961362 339 1 Sphingomonas sp. NIC1 species 745310 0 1 Sphingomonas sp. MM-1 400 species 450 1 Sphingomonas sp. Cra20 0 1327635 species 412 1 Sphingomonas sp. LM7 0 1938607 species 1 Sphingomonas sp. KC8 380 0 1030157 species 398 1 Sphingomonas melonis 0 152682 species species 1 Sphingomonas hengshuiensis 483 0 1609977 species 1549858 0 Sphingomonas taxi 1 455 0 397260 Sphingomonas sanxanigenens 1 788 species species 1560345 0 Sphingomonas panacis 1 401 genus 1 37 0 1434046 1087 3 Sphingorhabdus no rank 1050 2 2614947 0 0 1806885 Sphingorhabdus sp. M41 1 556 species 2077182 0 Sphingorhabdus sp. YGSMI21 1 494 species 218 1 genus 5382 Sphingobium 15 0 165695 species 0 13690 788 1 Sphingobium yanoikuyae species 394 Sphingobium japonicum 1 0 332056 332055 0 1 Sphingobium indicum 368 species 301 1 Sphingobium herbicidovorans 0 76947 species 1 Sphingobium cloacae 310 0 120107 species no rank 2124 6 0 2611147 261 Sphingobium sp. MI1205 1 0 407020 species species Sphingobium sp. SYK-6 1 394 0 627192 397 Sphingobium sp. TKS 1 0 1315974 species 0 1855519 283 1 Sphingobium sp. EP60837 species 1843368 0 1 Sphingobium sp. RAC03 383 species 484429 0 Sphingobium sp. YBL2 1 406 species Sphingobium hydrophobicum 1 335 0 1673076 species species 0 1332080 295 1 Sphingobium baderi species 0 46429 249 1 Sphingobium chlorophenolicum Zymomonas 2 1362 0 541 4 1 genus species Zymomonas mobilis 1 1358 0 542 2709685 0 1 468 genus 1 Sphingorhabdus flavimaris 468 0 266812 species 1827 5 Novosphingobium 0 165696 1 62 genus 0 205844 Novosphingobium pentaromativorans 1 435 species 415 1 2644732 0 no rank species Novosphingobium sp. PP1Y 1 415 0 702113 species 0 158500 1 Novosphingobium resinovorum 577 species 338 1 Novosphingobium aromaticivorans 0 48935 8 7623 0 82117 no rank 5790 2 0 62654 clade 5790 Candidatus Puniceispirillum 2 0 767891 61 1 genus species Candidatus Puniceispirillum marinum 1 5729 0 767892 0 213485 612 Micavibrio 2 genus 2 1 species 0 349221 610 1 Micavibrio aeruginosavorus 0 1632780 549 2 Phreatobacter genus 1 18 species 531 Phreatobacter sp. S-12 1 0 1868589 672 Polymorphum 2 0 991903 38 1 genus 0 991904 634 1 Polymorphum gilvum species 210 Rhizobiales 113132 356 0 1 604 order 15664 26 Bradyrhizobiaceae 0 41294 1 114 family 1 6 genus 2 Oligotropha 308 0 40136 0 40137 302 1 Oligotropha carboxidovorans species 444 Variibacter 2 1649510 0 14 1 genus species Variibacter gotjawalensis 1 430 0 1333996 1073 0 3439 2 Rhodopseudomonas genus 1 43 species 3396 Rhodopseudomonas palustris 1 0 1076 0 911 758 3 Nitrobacter genus 1 13 1 Nitrobacter winogradskyi 310 0 913 species species 1 Nitrobacter hamburgensis 435 0 912 0 85413 5 Bosea 2391 genus 1 67 species Bosea vaviloviae 1 607 1526658 0 1717 3 0 2653178 no rank 630 1 Bosea sp. RAC05 0 1842539 species species 0 2015316 Bosea sp. AS-1 1 576 Bosea sp. PAMC 26642 1 511 0 1792307 species 0 374 8210 Bradyrhizobium 11 genus 163 1 1088 1 Bradyrhizobium japonicum 0 375 species species 1 Bradyrhizobium diazoefficiens 1262 0 1355477 species 663 Bradyrhizobium oligotrophicum 1 0 44255 0 1274631 555 1 Bradyrhizobium icense species no rank 0 2631580 6 4479 species Bradyrhizobium sp. ORS 278 1 786 0 114615 species 0 115808 586 Bradyrhizobium sp. ORS 285 1 species 1 Bradyrhizobium sp. CCGE-LA001 532 0 1223566 species 0 376 1 Bradyrhizobium sp. 956 species 0 2057741 668 1 Bradyrhizobium sp. SK17 species 1 Bradyrhizobium sp. BTAi1 951 0 288000 family 1 62 0 69277 20 Phyllobacteriaceae 9070 9 Mesorhizobium 6097 0 68287 1 184 genus Mesorhizobium opportunistum 1 660 0 593909 species 1 Mesorhizobium sp. B7 643 0 1670800 species species 0 71433 587 Mesorhizobium amorphae 1 species 1 Mesorhizobium australicum 585 0 536018 1 Mesorhizobium loti 700 0 381 species no rank 944 1 0 325217 Mesorhizobium sp. WSM1497 1 944 0 278153 species 0 39645 1134 1 Mesorhizobium ciceri species species 0 2066070 1 Mesorhizobium japonicum 660 579 2 Aminobacter 31988 0 1 7 genus 1 Aminobacter aminovorans 572 0 83263 species 0 449972 451 Chelativorans 2 genus 46 1 0 2643807 1 405 no rank species 1 Chelativorans sp. BNC1 405 0 266779 genus 1 6 28100 0 572 2 Phyllobacterium species Phyllobacterium zundukense 1 566 0 1867719 6 1 genus Nitratireductor 2 543 0 245876 0 472175 1 Nitratireductor basaltis 537 species genus 1 23 0 274591 2 Hoeflea 766 0 2614931 743 1 no rank species 0 1620421 1 Hoeflea sp. IMCC20628 743 0 118882 Brucellaceae 20 4964 family 27 1 1 549 genus 14 Brucella 1808 0 234 species 1 Brucella ovis 24 0 236 species 0 235 Brucella abortus 1 58 260 1 Brucella suis 0 29461 species species 0 29459 Brucella melitensis 1 50 species 36855 0 85 1 Brucella canis 4 449 0 2632610 no rank 27 1 Brucella sp. 2002734562 0 1891098 species species 150 Brucella sp. 09RB8910 1 0 1844051 species 142 Brucella sp. 09RB8471 1 0 1149952 0 1885919 130 Brucella sp. 141012304 1 species species 1 Brucella microti 51 0 444163 species 120577 0 Brucella ceti 1 84 0 120576 1 Brucella pinnipedialis 87 species 111 1 Brucella vulpis 0 981386 species 33 1 genus Ochrobactrum 5 3129 0 528 species 0 529 Ochrobactrum anthropi 1 455 species 504 Ochrobactrum sp. A44 1 0 271865 species 0 571256 1218 1 Ochrobactrum pituitosum species 0 419475 919 Ochrobactrum pseudogrignonense 1 52 1 family 5962 Hyphomicrobiaceae 19 0 45401 394 2 Filomicrobium 0 119044 1 8 genus 0 1608628 1 Candidatus Filomicrobium marinum 386 species 1745 Hyphomicrobium 4 0 81 62 1 genus 0 1427356 Hyphomicrobium nitrativorans 1 307 species no rank 0 2619925 842 1 species 0 717785 842 Hyphomicrobium sp. MC1 1 534 1 Hyphomicrobium denitrificans 53399 0 species 0 29407 Rhodoplanes 2 633 genus 18 1 no rank 615 1 0 2619116 674703 0 615 Rhodoplanes sp. Z2-YC6860 1 species 12 1 genus Pelagibacterium 2 438 0 1082930 426 Pelagibacterium halotolerans 1 0 531813 species Blastochloris 2 486 0 59282 12 1 genus 0 1079 Blastochloris viridis 1 474 species genus 1 75 0 46913 4 Devosia 1788 1713 3 0 196773 no rank 1 Devosia sp. H5989 513 0 1643450 species species 1 Devosia sp. A16 680 0 1736675 species 2083786 0 1 Devosia sp. I507 520 genus 8 1 0 1068 Rhodomicrobium 2 426 species 0 1069 1 Rhodomicrobium vannielii 418 8596 Methylobacteriaceae 15 0 119045 21 1 family 0 186650 2 Microvirga 548 genus 1 22 Microvirga ossetica 1 526 0 1882682 species genus 1 194 407 0 9 Methylobacterium 4591 no rank 1598 3 2615210 0 501 1 Methylobacterium sp. C1 0 1479019 species 0 426117 679 Methylobacterium sp. 4-46 1 species 0 925818 1 Methylobacterium sp. AMS5 418 species 0 418223 455 1 Methylobacterium phyllosphaerae species species Methylobacterium radiotolerans 1 542 0 31998 species 0 114616 Methylobacterium nodulans 1 686 1 Methylobacterium oryzae 440 0 334852 species 676 1 Methylobacterium aquaticum 0 270351 species 0 2282523 3 3436 genus species 439 1 Methylobacterium zatmanii 0 29429 2146 1 Methylobacterium extorquens 0 408 species 0 223967 851 1 Methylobacterium populi species 1 16 family 969 5 Beijerinckiaceae 45404 0 7 1 genus 555 Beijerinckia 2 0 532 0 533 1 Beijerinckia indica 548 species 398 2 Methylocella 0 120652 1 8 genus species 390 Methylocella silvestris 1 199596 0 255475 0 1980 Aurantimonadaceae 7 family 7 1 4 Martelella 1560 293088 0 1 47 genus species 0 1486262 358 1 Martelella endophytica 0 2629616 1 522 no rank species 1 Martelella sp. AD-3 522 0 686597 species 633 Martelella mediterranea 1 0 293089 13 1 genus 413 Aureimonas 2 414371 0 0 2615206 1 400 no rank species 1 Aureimonas sp. AU20 400 1349819 0 0 772 Bartonellaceae 18 27635 family 40 1 0 773 17 Bartonella 27595 genus 1 505 1563 1 Bartonella vinsonii 0 33047 species 1 Bartonella tribocorum 1584 0 85701 species species 0 56426 1818 Bartonella clarridgeiae 1 910 1 Bartonella australis 0 388640 species 2645622 0 11656 6 no rank species 0 1933904 Bartonella sp. WD16.2 1 2077 species 0 1933906 1862 Bartonella sp. JB15 1 1 Bartonella sp. A1379B 1970 0 1933910 species species Bartonella sp. 1-1C 1 1918 0 515256 0 1933912 Bartonella sp. Raccoon60 1 1967 species Bartonella sp. JB63 1 1862 0 1933907 species 1 Bartonella quintana 1525 803 0 species 1 Bartonella ancashensis 1683 0 1318743 species 0 1686310 1 Bartonella apis 1346 species 774 0 1787 1 Bartonella bacilliformis species 0 38323 1643 Bartonella henselae 1 species species 0 33045 Bartonella grahamii 1 1575 0 119042 1888 6 no rank 1 22 genus 2 Hartmannibacter 791 1572860 0 0 1482074 1 Hartmannibacter diazotrophicus 769 species genus 46 1 0 1484898 Methyloceanibacter 2 503 species 1384459 0 457 1 Methyloceanibacter caenitepidi genus 1 17 1734920 0 594 2 Pseudorhodoplanes species 1 Pseudorhodoplanes sinuspersici 577 0 1235591 0 119043 663 3 Rhodobiaceae family 1 2 Parvibaculum 2 661 0 256616 28 1 genus Parvibaculum lavamentivorans 1 633 0 256618 species 1 9 family 6 Methylocystaceae 1457 0 31993 genus 47 1 133 0 Methylocystis 3 885 no rank 426 1 0 2625913 species 0 187303 426 1 Methylocystis sp. SC2 Methylocystis bryophila 1 412 655015 0 species genus 1 10 0 425 563 2 Methylosinus species 1 Methylosinus trichosporium 553 0 426 1898 Xanthobacteraceae 7 0 335928 35 1 family genus 1 11 0 6 2 Azorhizobium 518 species 0 7 507 Azorhizobium caulinodans 1 12 1 genus 625 Starkeya 2 0 152053 species 0 921 613 Starkeya novella 1 genus 1 22 0 279 2 Xanthobacter 720 0 280 698 1 Xanthobacter autotrophicus species family 195 1 0 82115 Rhizobiaceae 53 30650 genus 7 1 0 323620 Shinella 2 695 2643062 0 1 688 no rank species 0 879274 1 Shinella sp. HZN7 688 0 227292 5871 10 no rank genus 70 1 28105 0 Sinorhizobium 7 4846 species 0 194963 Sinorhizobium americanum 1 538 0 663276 1 1396 species group species 0 380 1396 Sinorhizobium fredii 1 2 1075 0 2613772 no rank species 0 1842534 594 1 Sinorhizobium sp. RAC02 481 Sinorhizobium sp. CCBAU 05631 1 0 794846 species 421 1 Sinorhizobium medicae 0 110321 species species Sinorhizobium meliloti 1 1346 0 382 0 106591 1025 3 Ensifer genus 1 11 species 0 106592 Ensifer adhaerens 1 579 1 Ensifer sojae 435 0 716925 species 1 63 genus 7383 6 Liberibacter 0 34019 0 34020 Candidatus Liberibacter africanus 1 1272 species species Candidatus Liberibacter asiaticus 1 1272 0 34021 species 1952 1 Liberibacter crescens 0 1273132 1488 Candidatus Liberibacter americanus 1 0 309868 species Candidatus Liberibacter solanacearum 1 1336 0 556287 species 0 227290 16506 34 no rank 1 70 genus 7 Agrobacterium 4686 0 357 species 0 373 Agrobacterium vitis 1 529 2632611 0 2 879 no rank 542 Agrobacterium sp. RAC06 1 1842536 0 species species 337 1 Agrobacterium sp. H13-3 0 861208 species 359 0 446 Agrobacterium rhizogenes 1 0 1183400 2 2762 species group 0 1176649 374 Agrobacterium fabrum 1 species species 2388 Agrobacterium tumefaciens 1 0 358 613 2 Neorhizobium 0 1525371 1 6 genus species 1 Neorhizobium galegae 607 399 0 11207 25 Rhizobium 0 379 1 655 genus species 0 398 377 1 Rhizobium tropici 396 0 1 Rhizobium phaseoli 1085 species 0 56730 646 Rhizobium gallicum 1 species species Rhizobium leguminosarum 1 2664 0 384 species Rhizobium etli 1 1414 0 29449 19 4366 0 2613769 no rank species Rhizobium sp. N1341 1 6 0 1703962 species Rhizobium sp. CIAT894 1 339 2020312 0 1571470 0 Rhizobium sp. ACO-34A 1 418 species species Rhizobium sp. N113 1 3 0 1703960 Rhizobium sp. N871 1 8 0 1703968 species species 0 2020311 1 Rhizobium sp. Kim5 319 species 424182 0 307 1 Rhizobium sp. IRBG74 species 0 1703961 68 1 Rhizobium sp. N1314 287 1 Rhizobium sp. NT-26 0 1125847 species 1 Rhizobium sp. NXC24 418 0 2048897 species 0 2020313 Rhizobium sp. TAL182 1 79 species 0 1703967 Rhizobium sp. N741 1 9 species species 0 2028343 370 1 Rhizobium sp. 10195 1 Rhizobium sp. N324 362 0 1703969 species 306 1 Rhizobium sp. Y9 0 1914541 species species 0 1869170 319 Rhizobium sp. S41 1 species 1 Rhizobium sp. IE4771 414 0 1301032 0 1703966 Rhizobium sp. N731 1 68 species species 0 1981173 1 Rhizobium sp. NXC14 266 1 15 family 1132 4 Chelatococcaceae 0 2036754 40 1 genus Chelatococcus 3 1117 0 28209 0 2638111 558 1 no rank species 0 1702325 558 Chelatococcus sp. CO-6 1 species 0 444444 519 1 Chelatococcus daeguensis order 0 2800060 6 2476 family 41 1 0 69657 Hyphomonadaceae 6 2476 1 35 genus 993 3 Hyphomonas 0 85 no rank 1 509 0 2630699 0 1906738 1 Hyphomonas sp. Mor2 509 species 1 Hyphomonas neptunium 449 0 81032 species Hirschia 2 1442 0 2723 24 1 genus species 0 2724 1418 Hirschia baltica 1 Magnetococcales 3 399 1191478 0 4 1 order family 2 395 1191479 0 2 1 genus Magnetococcus 2 395 162171 0 393 1 Magnetococcus marinus 0 1124597 species 67 1 order 44651 Rickettsiales 55 0 766 1 27 family 17841 27 Rickettsiaceae 0 775 tribe 16603 25 0 33988 2 1 genus Orientia 2 2413 0 69474 species 2411 Orientia tsutsugamushi 1 0 784 23 Rickettsia 14190 0 780 1 1290 genus 0 114277 5073 17 species group 1 Rickettsia philipii 97 0 1105106 species species 0 35794 Rickettsia slovaca 1 53 species 0 35791 205 Rickettsia massiliae 1 1 Rickettsia africae 75 35788 0 species 0 783 165 1 Rickettsia rickettsii species 1 Rickettsia rhipicephali 220 33992 0 species species Rickettsia monacensis 1 573 0 109232 species 252 1 Rickettsia amblyommatis 0 33989 species 100 1 Rickettsia heilongjiangensis 0 226665 species 0 786 666 1 Rickettsia akari species Rickettsia parkeri 1 68 0 35792 species Rickettsia japonica 1 121 0 35790 species 0 787 988 Rickettsia australis 1 species 137 1 Rickettsia montanensis 0 33991 0 47589 Rickettsia peacockii 1 430 species 781 0 98 Rickettsia conorii 1 species 0 42862 Rickettsia felis 1 825 species 2879 2 0 1129742 species group species 1787 1 Rickettsia bellii 0 33990 Rickettsia canadensis 1 1092 0 788 species 1507 1 0 114295 no rank species Rickettsia endosymbiont of Bemisia tabaci 1 1507 0 337479 species group 2 3441 0 114292 0 785 Rickettsia typhi 1 1718 species 0 782 1723 1 Rickettsia prowazekii species genus 0 2115980 1211 1 0 2115978 1 Candidatus Phycorickettsia trachydisci 1211 species 0 1328881 1378 Candidatus Midichloriaceae 3 family 2 1 1 25 genus 1376 2 Candidatus Midichloria 411566 0 1351 1 Candidatus Midichloria mitochondrii 0 234827 species 22111 23 Anaplasmataceae 0 942 1 31 family genus 1 55 0 943 6 Ehrlichia 9723 no rank 1731 1 0 106181 species 1731 1 Ehrlichia sp. HF 0 391036 species group 7937 4 0 106178 1921 1 Ehrlichia chaffeensis 0 945 species 944 0 2099 Ehrlichia canis 1 species species 0 35795 1756 1 Ehrlichia muris species 0 779 Ehrlichia ruminantium 1 2161 1536 4 Neorickettsia 0 33993 1 17 genus 483 1 Neorickettsia sennetsu 0 951 species Neorickettsia helminthoeca 1 476 0 33994 species species 560 1 Neorickettsia risticii 0 950 9741 8 0 952 tribe 0 953 9741 Wolbachia 8 genus 230 1 0 2640676 9511 7 no rank species Wolbachia endosymbiont of Brugia malayi 1 1200 0 80849 Wolbachia endosymbiont of Cimex lectularius 1 1044 0 246273 species 66084 0 1 Wolbachia sp. wRi 1212 species species 0 77551 Wolbachia endosymbiont of Onchocerca volvulus 1 1183 species 2538 1 Wolbachia endosymbiont of Drosophila simulans 0 77038 1203 Wolbachia endosymbiont of Onchocerca ochengi 1 100901 0 species 0 163164 Wolbachia endosymbiont of Drosophila melanogaster 1 1131 species genus 7 1 0 768 Anaplasma 4 1080 1 510 0 106179 species group species 0 948 1 Anaplasma phagocytophilum 510 0 769 1 Anaplasma centrale 270 species 293 1 Anaplasma marginale 0 770 species 0 1699067 3254 1 no rank 1 Rickettsiales bacterium Ac37b 3254 1528098 0 species order 1 31 204458 0 20 Caulobacterales 6740 100 1 family 6709 Caulobacteraceae 19 0 76892 no rank 1 410 0 81440 species 0 1759059 410 Caulobacteraceae bacterium OTSz_A_272 1 0 20 532 Phenylobacterium 2 genus 5 1 527 1 Phenylobacterium zucineum 0 284016 species 1 12 genus 425 2 Asticcacaulis 0 76890 0 78587 413 Asticcacaulis excentricus 1 species 62 1 genus 3060 Caulobacter 6 0 75 0 2648921 1 597 no rank species 0 366602 1 Caulobacter sp. K31 597 species 1 Caulobacter henricii 515 0 69395 species 0 88688 1 Caulobacter segnis 496 species 454 1 Caulobacter mirabilis 0 69666 species 0 155892 Caulobacter vibrioides 1 936 genus 1 98 0 41275 7 Brevundimonas 2182 359 1 Brevundimonas naejangsanensis 588932 0 species species 367 1 Brevundimonas subvibrioides 0 74313 species 302 1 Brevundimonas vesicularis 0 41276 no rank 0 2622653 3 1056 species 451 1 Brevundimonas sp. LM2 0 1938605 species 1 Brevundimonas sp. DS20 338 0 1532555 species 267 Brevundimonas sp. GW460-12-10-14-LB2 1 0 1827469 1 136 order 91 Rhodobacterales 54638 0 204455 family 1 806 0 31989 90 Rhodobacteraceae 54502 0 92944 Ketogulonicigenium 3 1113 genus 8 1 species 469 Ketogulonicigenium robustum 1 92947 0 0 92945 636 1 Ketogulonicigenium vulgare species Ruegeria 3 1820 97050 0 33 1 genus 1 741 0 2625375 no rank 0 292414 741 Ruegeria sp. TM1040 1 species 0 89184 1046 Ruegeria pomeroyi 1 species 1 Thalassococcus 7 0 436357 genus Sulfitobacter 3 2437 60136 0 10 1 genus 0 196795 1 1217 no rank species 1217 Sulfitobacter sp. AM1-D1 1 0 1917485 0 1402135 1210 Sulfitobacter pseudonitzschiae 1 species 2 Dinoroseobacter 684 0 309512 1 5 genus species 0 215813 679 1 Dinoroseobacter shibae 0 188905 713 2 Jannaschia genus 1 2 1 711 0 2645469 no rank species 0 290400 711 Jannaschia sp. CCS1 1 0 1284657 1692 1 genus species 0 1284658 1692 1 Planktomarina temperata 1281 2 58840 0 no rank species 489 1 Rhodobacteraceae bacterium QY30 0 2033435 792 Rhodobacteraceae bacterium 1 0 1904441 species 1050 2 Confluentimicrobium 0 1609958 1 2 genus no rank 0 2643318 1 1048 Confluentimicrobium sp. EMB200-NS6 1 1048 0 1609966 species genus 883 1 0 1649279 species 1 Ruegeria mobilis 883 0 379347 0 119541 799 Rhodobaca 2 genus 5 1 0 441209 1 Rhodobaca barguzinensis 794 species 1 9 genus 707 2 Defluviimonas 0 1097466 1 Defluviimonas alba 698 0 1335048 species 5 Celeribacter 3345 875170 0 1 13 genus 0 1208324 971 Celeribacter indicus 1 species species 0 1411902 1046 1 Celeribacter manganoxidans 0 1758178 605 1 Celeribacter ethanolicus species species 1 Celeribacter marinus 710 0 1397108 20 1 genus Rhodovulum 4 2265 0 34008 1282 2 0 2631432 no rank species 640 1 Rhodovulum sp. MB263 0 308754 Rhodovulum sp. P5 1 642 0 1564506 species species 1 Rhodovulum sulfidophilum 963 0 35806 1 28 genus 4 Octadecabacter 3222 0 53945 species Octadecabacter temperatus 1 642 0 1458307 species 1300 1 Octadecabacter antarcticus 0 1217908 species Octadecabacter arcticus 1 1252 0 53946 genus 1 4 0 74030 1022 2 Roseovarius 0 215743 1018 Roseovarius mucosus 1 species genus 1 1 58842 0 805 2 Sagittula 1 804 2624628 0 no rank species Sagittula sp. P11 1 804 0 2009329 Marinovum 2 1032 0 367771 4 1 genus species 0 42444 1 Marinovum algicola 1028 0 1060 Rhodobacter 5 3102 genus 21 1 species 559 1 Rhodobacter capsulatus 0 1061 1369 1 Rhodobacter sphaeroides 0 1063 species 0 196779 1153 2 no rank 0 1850250 1 Rhodobacter sp. LPB0142 681 species 1 Rhodobacter sp. CZR27 472 0 2033869 species 0 265 5038 Paracoccus 9 genus 91 1 460 Paracoccus contaminans 1 0 1945662 species 0 1077935 1 Paracoccus zhejiangensis 640 species species 744 1 Paracoccus yeei 0 147645 Paracoccus aminovorans 1 508 0 34004 species no rank 719 1 0 246570 species 0 1529068 719 1 Paracoccus sp. BM15 species 0 34003 1 Paracoccus aminophilus 567 1 Paracoccus denitrificans 662 0 266 species 2065379 0 Paracoccus sp. CBA4604 1 647 species genus 1 906 0 191028 species 0 133924 Leisingera methylohalidivorans 1 906 0 360528 900 2 Pelagibaca genus 1 5 1 Pelagibaca abyssi 895 0 1250539 species 6987 Phaeobacter 5 0 302485 103 1 genus species 0 1844006 1 Phaeobacter porticola 785 species 1 Phaeobacter gallaeciensis 1885 0 60890 0 221822 1 Phaeobacter inhibens 2640 species species 0 1580596 1574 Phaeobacter piscinae 1 603 1 0 1759396 genus 603 1 0 2622455 no rank 1920883 0 603 Marivivens sp. JLT3646 1 species 774 Roseibacterium 2 0 159345 3 1 genus 159346 0 1 Roseibacterium elongatum 771 species 1 13 genus 511 2 Pannonibacter 227873 0 species 1 Pannonibacter phragmitetus 498 0 121719 1 93 genus 4 Labrenzia 1918 0 478070 species Labrenzia aggregata 1 619 0 187304 no rank 1206 2 0 2648686 2021862 0 651 1 Labrenzia sp. VG12 species 0 1674922 555 Labrenzia sp. CP4 1 species 0 74032 789 Antarctobacter 2 genus 7 1 species 782 Antarctobacter heliothermus 1 0 74033 genus 31 1 0 2433 2320 Roseobacter 3 species 0 42443 1163 Roseobacter litoralis 1 species 1126 Roseobacter denitrificans 1 0 2434 Halocynthiibacter 2 943 0 1579315 2 1 genus 941 Halocynthiibacter arcticus 1 1579316 0 species 828 2 Tateyamaria 0 299261 1 1 genus species 0 299262 827 Tateyamaria omphalii 1 genus 7 1 Loktanella 0 245186 1 1026 0 2211641 genus Loktanella vestfoldensis 1 1026 0 245188 species 2 1678 0 263377 genus no rank 1 880 0 2640570 Yangia sp. CCB-MM3 1 880 0 1792508 species species Thiobacimonas profunda 1 798 0 1229727 genus 4 1 0 285107 Thioclava 2 489 1915078 0 485 1 Thioclava nitratireducens species 2 603 0 2800059 order 2 603 0 2800061 family 2 Maricaulis 603 0 74317 1 13 genus 0 74318 Maricaulis maris 1 590 species subphylum 200 117465 0 68525 53 1 class Epsilonproteobacteria 73 70178 0 29547 Campylobacterales 66 67654 0 213849 154 1 order 0 72294 54444 41 Campylobacteraceae family 1 81 0 57665 Sulfurospirillum 9 4300 genus 59 1 no rank 0 2618290 1886 3 species 599 Sulfurospirillum sp. SL2-1 1 0 1986224 0 220622 1 Sulfurospirillum sp. JPD-1 550 species species 0 1581011 737 Sulfurospirillum sp. UCH001 1 660 1 Sulfurospirillum deleyianum 0 65553 species 0 366522 Sulfurospirillum cavolei 1 230 species species 422 1 Sulfurospirillum multivorans 66821 0 species Sulfurospirillum barnesii 1 679 0 44674 0 194424 Sulfurospirillum halorespirans 1 364 species 0 2321108 5 15313 no rank 0 28196 7752 Arcobacter 3 genus 80 1 species 0 28199 1 Arcobacter nitrofigilis 3136 species 4536 1 Arcobacter butzleri 0 28197 genus 1 3560 0 2321187 species 0 1850254 3560 1 Arcobacter sp. LPB0137 0 2321207 1 4001 no rank 0 944547 4001 Arcobacter sp. L 1 species 0 194 26 Campylobacter 34750 genus 1 336 species 1675 1 Campylobacter insulaenigrae 0 260714 species 0 824 Campylobacter gracilis 1 165 0 198 Campylobacter hyointestinalis 1 1060 species 1 Campylobacter ureolyticus 1803 0 827 species Campylobacter sputorum 1 2416 0 206 species species 1372 1 Campylobacter volucris 0 1031542 Campylobacter peloridis 1 1471 0 488546 species 958 1 Campylobacter avium 0 522485 species species 0 197 1 Campylobacter jejuni 2931 species Campylobacter helveticus 1 684 0 28898 species 0 200 Campylobacter curvus 1 197 species Campylobacter hominis 1 836 0 76517 0 2593542 4211 4 no rank 0 1660076 Campylobacter sp. RM12175 1 862 species 1660074 0 1 Campylobacter sp. RM8964 1016 species 0 1660073 Campylobacter sp. RM6137 1 733 species species 0 1500960 1 Campylobacter sp. RM16704 1600 Campylobacter coli 1 2426 0 195 species 1 Campylobacter iguaniorum 692 0 1244531 species species 0 75658 579 1 Campylobacter lanienae 1431 Campylobacter subantarcticus 1 0 497724 species species 0 199 998 1 Campylobacter concisus species 0 1965231 2115 1 Campylobacter pinnipediorum species Campylobacter cuniculorum 1 1110 0 374106 0 201 3863 Campylobacter lari 1 species species 0 196 1 Campylobacter fetus 1421 0 2771471 5 2012 family 2 Sulfuricurvum 188 0 286130 1 1 genus 1 Sulfuricurvum kujiense 187 0 148813 species 1824 3 Sulfurimonas 0 202746 1 8 genus species 1 Sulfurimonas autotrophica 776 0 202747 0 39766 1 Sulfurimonas denitrificans 1040 species 0 72293 9665 14 Helicobacteraceae family 1 3 genus 26 1 0 209 9488 Helicobacter 12 species 334 1 Helicobacter acinonychis 0 212 1 Helicobacter himalayensis 346 0 1591088 species species 0 76936 344 Helicobacter typhlonius 1 species 1 Helicobacter cinaedi 447 0 213 species 32025 0 592 1 Helicobacter hepaticus 5011 1 Helicobacter pylori 210 0 species 0 2593540 1 362 no rank 0 222136 Helicobacter sp. MIT 01-6242 1 362 species 0 214 172 1 Helicobacter felis species 0 217 1 Helicobacter mustelae 352 species 0 138563 926 Helicobacter cetorum 1 species species 1 Helicobacter bilis 576 0 37372 genus 0 843 174 1 0 844 1 Wolinella succinogenes 174 species family 1379 5 0 2771472 2 1 genus 436 Nitratifractor 2 0 269260 1 Nitratifractor salsuginis 434 0 269261 species Sulfurovum 3 943 0 265570 26 1 genus 466 1 Sulfurovum lithotrophicum 0 206403 species no rank 0 2646778 1 451 species 387093 0 Sulfurovum sp. NBC37-1 1 451 2471 6 Nautiliales 0 235899 1 14 order 579 2 0 2795691 family 0 269258 579 Nitratiruptor 2 genus 9 1 no rank 1 570 0 2624044 0 387092 570 1 Nitratiruptor sp. SB155-2 species family 2 1 0 224467 1878 Nautiliaceae 3 1876 Nautilia 2 0 191291 1 1 genus species 0 244787 Nautilia profundicola 1 1875 0 28221 47287 Deltaproteobacteria 127 class 54 1 453227 0 Desulfarculales 4 381 order 5 1 family 11 1 453228 0 376 Desulfarculaceae 3 2 1 genus Desulfarculus 2 365 0 453229 363 1 Desulfarculus baarsii 0 453230 species Syntrophobacterales 11 941 0 213462 17 1 order family 1 1 0 213465 Syntrophobacteraceae 3 240 239 2 Syntrophobacter 0 29526 1 6 genus 0 119484 233 Syntrophobacter fumaroxidans 1 species 684 7 Syntrophaceae 0 213468 1 2 family genus 1 1 0 2357 324 Desulfomonile 2 Desulfomonile tiedjei 1 323 0 2358 species 0 60892 173 Desulfobacca 2 genus 1 1 172 Desulfobacca acetoxidans 1 0 60893 species Syntrophus 2 185 43773 0 2 1 genus 183 Syntrophus aciditrophicus 1 0 316277 species 0 213113 Desulfurellales 5 1918 order 3 1 1915 4 Desulfurellaceae 0 117942 1 1 family 2 Desulfurella 1348 0 33001 1 4 genus species Desulfurella acetivorans 1 1344 0 33002 566 1 0 84404 genus species Hippea maritima 1 566 84405 0 54 1 order 5842 Desulfovibrionales 26 0 213115 32 1 family Desulfovibrionaceae 18 5180 0 194924 0 872 9 Desulfovibrio 2518 genus 1 28 0 876 354 Desulfovibrio desulfuricans 1 species no rank 1 129 2593640 0 species 129 Desulfovibrio sp. G11 1 0 631220 0 58180 1 Desulfovibrio alaskensis 222 species 112 1 Candidatus Desulfovibrio trichonymphae 0 1725232 species species 44742 0 Desulfovibrio fairfieldensis 1 161 species 901 0 140 Desulfovibrio piger 1 488 1 Desulfovibrio magneticus 0 184917 species 0 881 884 Desulfovibrio vulgaris 1 species 6 1 genus 683 Pseudodesulfovibrio 4 0 2035811 species 0 57320 213 1 Pseudodesulfovibrio profundus species 0 1716143 1 Pseudodesulfovibrio indicus 219 species Pseudodesulfovibrio aespoeensis 1 245 0 182210 3 1 genus 1362 Lawsonia 2 0 41707 species 0 29546 1359 Lawsonia intracellularis 1 genus 2582840 0 1 236 species 0 873 1 Desulfovibrio africanus 236 349 1 0 2794998 genus species Desulfovibrio salexigens 1 349 0 880 213117 0 Desulfohalobiaceae 3 205 family 2 1 1 2 genus 2 Desulfohalobium 203 0 45662 201 1 Desulfohalobium retbaense 45663 0 species 403 Desulfomicrobiaceae 4 213116 0 1 1 family 402 3 Desulfomicrobium 0 898 1 8 genus species 0 132132 Desulfomicrobium orale 1 158 species 0 899 236 Desulfomicrobium baculatum 1 0 213118 Desulfobacterales 18 7328 order 24 1 1830 8 Desulfobulbaceae 0 213121 1 24 family Desulfotalea 2 684 109168 0 4 1 genus 0 84980 1 Desulfotalea psychrophila 680 species genus 2 1 0 893 Desulfobulbus 2 243 species 0 1986146 Desulfobulbus sp. ORNL 1 241 427922 0 286 1 genus 0 427923 1 Desulfurivibrio alkaliphilus 286 species 0 53318 2 Desulfocapsa 593 genus 1 1 species Desulfocapsa sulfexigens 1 592 0 65555 213119 0 5474 9 Desulfobacteraceae family 1 18 genus 0 2295 440 1 species 1 Desulfobacterium autotrophicum 440 2296 0 1 3 genus 1685 2 Desulfobacula 0 28222 species 0 28223 1682 Desulfobacula toluolica 1 5 1 genus 812 Desulfococcus 3 0 896 Desulfococcus multivorans 1 279 0 897 species 0 181663 528 1 Desulfococcus oleovorans species genus 5 1 0 218207 2519 Desulfatibacillum 2 species 1 Desulfatibacillum alkenivorans 2514 0 259354 0 29 Myxococcales 38 23670 order 256 1 8012 8 80812 0 suborder 1 3 family 3 Sandaracinaceae 1274 0 1055686 Sandaracinus 2 1271 0 1055688 11 1 genus species 0 927083 1260 Sandaracinus amylolyticus 1 17 1 family 6738 Polyangiaceae 5 0 49 50 0 1234 Chondromyces 2 genus 5 1 species 1229 1 Chondromyces crocatus 0 52 5487 2 Sorangium 0 39643 1 9 genus species 0 56 Sorangium cellulosum 1 5478 0 224462 3 2158 suborder 0 224464 Kofleriaceae 3 2158 family 24 1 0 162027 2134 Haliangium 2 genus 21 1 1 Haliangium ochraceum 2113 80816 0 species suborder 0 80811 26 13244 5574 9 Myxococcaceae 0 31 1 10 family 1 66 genus 5 Myxococcus 3923 0 32 0 34 1 Myxococcus xanthus 634 species 0 33 Myxococcus fulvus 1 1632 species 0 1297742 717 1 Myxococcus hansupus species species 0 83455 874 1 Myxococcus stipitatus 0 83461 Corallococcus 3 1641 genus 22 1 35 0 756 Myxococcus macrosporus 1 species species 863 1 Corallococcus coralloides 0 184914 11 1 family Anaeromyxobacteraceae 5 2190 0 1524215 0 161492 Anaeromyxobacter 4 2179 genus 21 1 2 1261 2620896 0 no rank species 0 404589 737 1 Anaeromyxobacter sp. Fw109-5 species 0 447217 524 1 Anaeromyxobacter sp. K species 897 1 Anaeromyxobacter dehalogenans 0 161493 family 41 1 0 39 Archangiaceae 9 5012 2 1 genus 646 Stigmatella 2 40 0 species Stigmatella aurantiaca 1 644 0 41 genus 1 6 0 42 2 Cystobacter 961 955 1 Cystobacter fuscus 0 43 species 2 Melittangium 725 0 44 1 4 genus species Melittangium boletus 1 721 0 83453 Archangium 2 2639 0 47 2 1 genus species 0 48 2637 Archangium gephyra 1 family 2 1 0 1524213 Vulgatibacteraceae 3 468 genus 1 4 0 1524214 466 2 Vulgatibacter 1391653 0 462 1 Vulgatibacter incomptus species 44 1 order Desulfuromonadales 24 7153 0 69541 1 33 family 5006 14 Geobacteraceae 0 213422 0 28231 11 Geobacter 4707 genus 1 46 1340425 0 170 1 Geobacter anodireducens species species 0 28232 1 Geobacter metallireducens 757 no rank 2 969 0 2627627 286 1 Geobacter sp. M21 0 443144 species 1 Geobacter sp. M18 683 0 443143 species 371 1 Geobacter daltonii 0 1203471 species Geobacter bemidjiensis 1 318 0 225194 species species 0 35554 Geobacter sulfurreducens 1 205 0 345632 1 Geobacter pickeringii 237 species species 0 313985 1 Geobacter lovleyi 206 0 351604 1428 1 Geobacter uraniireducens species 0 392332 2 Geoalkalibacter 266 genus 1 7 259 Geoalkalibacter subterraneus 1 483547 0 species 0 213421 2103 9 Desulfuromonadaceae family 1 14 genus 11 1 0 890 1122 Desulfuromonas 3 no rank 1 333 0 2614637 Desulfuromonas sp. DDH964 1 333 0 1823759 species Desulfuromonas soudanensis 1 778 0 1603606 species 11 1 genus 967 Pelobacter 5 0 18 1 189 0 2620299 no rank species 189 1 Pelobacter sp. SFB93 0 1842532 0 29543 1 Pelobacter propionicus 236 species 0 19 Pelobacter carbinolicus 1 268 species 1 Pelobacter acetylenicus 263 0 29542 species Betaproteobacteria 349 208623 0 28216 175 1 class 233 Burkholderiales 171368 0 80840 1 1140 order 83 1 family 12276 Oxalobacteraceae 29 0 75682 genus 35 1 0 963 3498 Herbaspirillum 6 1 Herbaspirillum hiltneri 1275 0 341045 species no rank 476 1 0 2624150 species 476 1 Herbaspirillum sp. meg3 2025949 0 0 92645 501 Herbaspirillum frisingense 1 species species 1 Herbaspirillum rubrisubalbicans 375 0 80842 964 0 836 1 Herbaspirillum seropedicae species 2 1 genus 238 Oxalobacter 2 0 846 species 0 847 236 1 Oxalobacter formigenes 149698 0 Massilia 6 2664 genus 66 1 species 1 Massilia putida 564 0 1141883 0 2072590 509 1 Massilia sp. ZMN-3 species species 0 2045208 1 Massilia sp. B2 495 0 2609279 2 1030 no rank Massilia sp. NR 4-1 1 416 0 1678028 species species 0 1707785 614 Massilia sp. WG5 1 genus 1 6 0 303379 717 3 Herminiimonas species 345 Herminiimonas arsenitoxidans 1 0 1809410 366 Herminiimonas arsenicoxydans 1 204773 0 species genus 53 1 0 202907 Collimonas 4 2005 533 1 Collimonas pratensis 0 279113 species species 1 Collimonas fungivorans 623 0 158899 species Collimonas arenae 1 796 0 279058 0 29580 Janthinobacterium 7 3071 genus 61 1 1826 4 0 2610881 no rank 441 Janthinobacterium sp. LM6 1 0 1938606 species species Janthinobacterium sp. B9-8 1 487 0 1236179 0 1644131 598 Janthinobacterium sp. 1_2014MBL_MicDiv 1 species species 300 1 Janthinobacterium sp. Marseille 0 375286 species 1 Janthinobacterium agaricidamnosum 438 0 55508 746 Janthinobacterium svalbardensis 1 0 368607 species family 295 1 0 119060 104617 Burkholderiaceae 84 1 62 genus 8478 10 Pandoraea 0 93217 species 0 93220 Pandoraea pnomenusa 1 960 493 Pandoraea apista 1 0 93218 species 0 93222 410 Pandoraea sputorum 1 species 0 445709 457 1 Pandoraea thiooxydans species 484 Pandoraea vervacti 1 0 656178 species 0 573737 834 1 Pandoraea oxalativorans species species 861 1 Pandoraea norimbergensis 0 93219 species 1 Pandoraea faecigallinarum 477 0 656179 1 Pandoraea pulmonicola 3440 0 93221 species genus 0 2571159 409 1 409 Paraburkholderia rhizoxinica 1 0 412963 species 1822464 0 14738 Paraburkholderia 12 genus 216 1 species 261302 0 1 Paraburkholderia phytofirmans 3074 no rank 2615204 0 1098 1 0 1926494 1098 Paraburkholderia sp. SOS3 1 species species 0 134537 Paraburkholderia fungorum 1 896 0 75105 2020 1 Paraburkholderia caribensis species 169430 0 1154 Paraburkholderia hospita 1 species 0 36873 1107 Paraburkholderia xenovorans 1 species species 0 2026199 1085 Paraburkholderia aromaticivorans 1 species 1000 Paraburkholderia sprentiae 1 0 948107 0 311230 Paraburkholderia terrae 1 914 species species 0 148447 Paraburkholderia phymatum 1 1163 252970 0 1011 1 Paraburkholderia phenoliruptrix species genus 1 1038 0 1827195 0 758793 1 Burkholderia sp. RPE64 1038 species 40 1 genus 4832 Ralstonia 5 0 48736 0 105219 736 Ralstonia mannitolilytica 1 species 0 329 1 Ralstonia pickettii 901 species species 0 305 2667 Ralstonia solanacearum 1 species 0 190721 1 Ralstonia insidiosa 488 4 Polynucleobacter 1975 0 44013 1 33 genus species 921 Polynucleobacter asymbioticus 1 0 576611 species 442 1 Polynucleobacter necessarius 0 576610 Polynucleobacter duraquae 1 579 0 1835254 species 0 32008 Burkholderia 41 62922 genus 1617 1 species 1612 Burkholderia gladioli 1 28095 0 0 41899 Burkholderia plantarii 1 839 species 25211 19 0 87882 species group species 0 60550 Burkholderia pyrrocinia 1 491 species 2417 Burkholderia lata 1 0 482957 3720 1 Burkholderia cepacia 0 292 species species 0 488447 1 Burkholderia contaminans 695 749 1 [Pseudomonas] mesoacidophila 0 265293 species species 0 60552 1783 Burkholderia vietnamiensis 1 Burkholderia stabilis 1 1084 0 95485 species 0 95486 3316 1 Burkholderia cenocepacia species species 1 Burkholderia ambifaria 1059 0 152480 species 730 1 Burkholderia stagnalis 1503054 0 species Burkholderia seminalis 1 608 0 488731 species 0 488446 Burkholderia latens 1 1178 species 1 Burkholderia dolosa 711 0 152500 Burkholderia ubonensis 1 2653 0 101571 species 0 488729 568 1 Burkholderia metallica species species 1 Burkholderia pseudomultivorans 644 1207504 0 species 0 1503055 1 Burkholderia territorii 484 0 488732 573 Burkholderia diffusa 1 species species 0 87883 Burkholderia multivorans 1 1748 0 2613784 11 9161 no rank 638 1 Burkholderia sp. Bp5365 1740162 0 species species Burkholderia sp. 2002721687 1 649 0 1468409 species 612 Burkholderia sp. Bp7605 1 0 1740163 0 1795874 462 Burkholderia sp. PAMC 28687 1 species 1 Burkholderia sp. KJ006 722 0 416344 species 1032 1 Burkholderia sp. YI23 0 1097668 species species 0 640510 Burkholderia sp. CCGE1001 1 1030 species 0 640512 920 Burkholderia sp. CCGE1003 1 species 1 Burkholderia sp. PAMC 26561 461 0 1795043 species 0 1678678 1 Burkholderia sp. HB1 1077 0 758796 1558 Burkholderia sp. RPE67 1 species species 0 337 1 Burkholderia glumae 1803 species group 7 22679 0 111527 species Burkholderia mallei 1 1858 0 13373 species 342113 0 1 Burkholderia oklahomensis 2072 0 1637837 1046 Burkholderia sp. MSMB0266 1 species 0 28450 Burkholderia pseudomallei 1 12777 species 0 57975 Burkholderia thailandensis 1 2401 species species 1 Burkholderia sp. MSMB617WGS 1243 0 1637831 species 1 Burkholderia sp. MSMB0852 1282 0 1637841 0 106589 9930 9 Cupriavidus genus 1 160 species Cupriavidus sp. USMAA1020 1 1066 367825 0 species 0 68895 1650 1 Cupriavidus basilensis 0 248026 555 Cupriavidus pinatubonensis 1 species no rank 2382 2 0 2640874 0 1389192 Cupriavidus sp. USMAHM13 1 1081 species 0 876364 1301 Cupriavidus sp. USMAA2-4 1 species species 0 119219 2619 1 Cupriavidus metallidurans 618 Cupriavidus gilardii 1 0 82541 species species 0 106590 1 Cupriavidus necator 880 no rank 2 693 0 80841 species 0 1834205 421 Burkholderiales bacterium YL45 1 species 0 1469502 272 1 Burkholderiales bacterium GJ-E10 no rank 17 6485 0 224471 genus 1 5 0 93681 2 Roseateles 981 0 76731 976 Roseateles depolymerans 1 species genus 11 1 0 316612 Methylibium 2 489 species Methylibium petroleiphilum 1 478 0 105560 1 10 genus 516 2 Leptothrix 0 88 0 34029 506 Leptothrix cholodnii 1 species 0 212743 551 Rhizobacter 2 genus 16 1 species Rhizobacter gummiphilus 1 535 0 946333 7 1 genus Rubrivivax 2 691 0 28067 1 Rubrivivax gelatinosus 684 0 28068 species 1 7 genus 806 2 Mitsuaria 0 65047 799 1 0 2648776 no rank 0 1658665 799 Mitsuaria sp. 7 1 species 0 413882 1156 1 [Polyangium] brachysporum species genus 1 8 32012 0 2 Thiomonas 500 0 926 492 Thiomonas intermedia 1 species 0 318147 795 2 Paucibacter genus 1 9 no rank 0 2642959 786 1 species 786 1 Paucibacter sp. KCTC 42545 0 1768242 1 183 family 57 Comamonadaceae 26838 80864 0 Diaphorobacter 2 334 0 238749 1 1 genus 333 Diaphorobacter polyhydroxybutyrativorans 1 0 1546149 species 0 2678886 1 315 genus 0 2116657 1 Melaminivora sp. SC2-7 315 species 1 2 genus 462 2 Alicycliphilus 0 201096 0 179636 460 1 Alicycliphilus denitrificans species 683 2 0 2490452 genus species 0 1458426 322 1 Comamonadaceae bacterium B1 0 1458425 361 1 Comamonadaceae bacterium A1 species 0 174951 Ramlibacter 2 828 genus 4 1 1 Ramlibacter tataouinensis 824 0 94132 species genus 1 254 0 352450 0 2109915 254 1 Simplicispira sp. SC1-8 species genus 1 14 0 219181 3 Ottowia 677 285 1 0 2645081 no rank species Ottowia sp. oral taxon 894 1 285 0 1658672 species 378 1 Ottowia sp. KADR8-3 0 2109914 1 8 genus 1126 2 Verminephrobacter 0 364316 1118 1 Verminephrobacter eiseniae 364317 0 species genus 1 393 0 1436289 species 393 Candidatus Symbiobacter mobilis 1 1436290 0 genus 1 9 0 52972 2003 3 Polaromonas species Polaromonas naphthalenivorans 1 681 216465 0 no rank 1313 1 2638319 0 1 Polaromonas sp. JS666 1313 0 296591 species Hydrogenophaga 4 1203 0 47420 9 1 genus species 1 Hydrogenophaga crassostreae 402 0 1763535 no rank 792 2 0 2610897 species 1 Hydrogenophaga sp. PBC 409 0 795665 species 0 1842537 Hydrogenophaga sp. RAC07 1 383 116 1 genus 3333 Acidovorax 9 0 12916 0 553814 1 Acidovorax sp. NA3 280 species species 1 Acidovorax avenae 609 0 80867 no rank 0 2684926 4 1526 species 358220 0 Acidovorax sp. KKS102 1 347 species 0 1858609 522 Acidovorax sp. T1 1 species 352 1 Acidovorax sp. RAC01 0 1842533 0 232721 305 Acidovorax sp. JS42 1 species species 1 Acidovorax ebreus 328 0 721785 species 474 Acidovorax citrulli 1 0 80869 0 1649468 2 Melaminivora 384 genus 1 11 no rank 2641902 0 1 373 0 2109913 373 Melaminivora sp. SC2-9 1 species Rhodoferax 5 1534 0 28065 12 1 genus 1484693 0 254 Rhodoferax saidenbachensis 1 species species 347 1 Rhodoferax ferrireducens 0 192843 0 1842727 1 Rhodoferax koreense 536 species species 81479 0 385 Rhodoferax antarcticus 1 0 283 3225 Comamonas 4 genus 9 1 1082851 0 Comamonas serinivorans 1 1074 species species 1426 Comamonas kerstersii 1 0 225992 species 0 285 716 Comamonas testosteroni 1 3027 Delftia 5 80865 0 63 1 genus 0 180282 1 Delftia tsuruhatensis 668 species 1 Delftia acidovorans 592 80866 0 species 0 2613839 1704 2 no rank species 0 742013 951 Delftia sp. Cs1-4 1 0 1920191 1 Delftia sp. HK171 753 species Limnohabitans 3 518 0 665874 6 1 genus 512 2 0 2626134 no rank species 0 1678129 246 Limnohabitans sp. 103DPR2 1 266 Limnohabitans sp. 63ED37-2 1 0 1678128 species 0 34072 6356 Variovorax 5 genus 54 1 1725 2 0 663243 no rank 1795631 0 860 Variovorax sp. PAMC 28711 1 species 865 Variovorax sp. PMC12 1 0 2126319 species 1 Variovorax paradoxus 3908 0 34073 species 0 436515 Variovorax boronicumulans 1 669 species family 65 1 0 506 Alcaligenaceae 43 19319 genus 0 90243 402 1 species 0 90245 402 1 Oligella urethralis genus 9 1 0 507 Alcaligenes 2 2392 511 0 Alcaligenes faecalis 1 2383 species genus 1 5 0 359336 304 2 Castellaniella 1 Castellaniella defragrans 299 0 75697 species 6 Achromobacter 4759 0 222 1 74 genus species Achromobacter denitrificans 1 978 0 32002 species 0 217204 476 1 Achromobacter insolitus no rank 1 421 0 2626865 0 1758194 1 Achromobacter sp. AONIH1 421 species species 0 217203 795 1 Achromobacter spanius 2015 1 Achromobacter xylosoxidans 0 85698 species 3 1 genus 648 Advenella 3 0 290425 species 0 302406 Advenella mimigardefordensis 1 347 species Advenella kashmirensis 1 298 0 310575 genus 1 7 29574 0 3 Taylorella 2012 species 1072 Taylorella equigenitalis 1 0 29575 species 1 Taylorella asinigenitalis 933 0 84590 138 1 genus Bordetella 17 6964 0 517 species 484 Bordetella genomosp. 6 1 0 463024 310 1 Bordetella genomosp. 9 0 1416803 species 575 Bordetella pertussis 1 0 520 species species 0 463014 Bordetella flabilis 1 320 species 0 35814 292 1 Bordetella holmesii species 0 1331258 Bordetella pseudohinzii 1 307 species 1 Bordetella parapertussis 556 0 519 350 1 Bordetella trematum 0 123899 species species 0 463040 451 1 Bordetella genomosp. 13 species 0 518 1 Bordetella bronchiseptica 936 no rank 365 1 0 2630031 species Bordetella sp. H567 1 365 0 1697043 0 103855 345 1 Bordetella hinzii species 0 94624 Bordetella petrii 1 376 species species 1 Bordetella bronchialis 489 0 463025 Bordetella genomosp. 8 1 463 0 1416806 species species 0 521 207 1 Bordetella avium 2 Orrella 396 0 1921582 1 10 genus 0 1851544 386 1 Orrella dioscoreae species 0 1100891 452 Paenalcaligenes 2 genus 3 1 449 1 Paenalcaligenes hominis 0 643674 species 1 1 genus 524 Basilea 2 0 1472344 0 1472345 523 1 Basilea psittacipulmonis species 2 1 genus Pusillimonas 2 401 0 305976 no rank 1 399 2640016 0 1 Pusillimonas sp. T7-7 399 0 1007105 species order 1 75 0 206351 36 Neisseriales 11198 family 42 1 0 481 7701 Neisseriaceae 22 1 1 genus 480 2 Simonsiella 0 71 species 1 Simonsiella muelleri 479 72 0 312 2 Eikenella 0 538 1 2 genus Eikenella corrodens 1 310 0 539 species 781 Vitreoscilla 3 59 0 13 1 genus 269 Vitreoscilla filiformis 1 0 63 species no rank 0 2627922 499 1 species 499 1 Vitreoscilla sp. C1 0 96942 0 1193515 1 986 genus species 986 Snodgrassella alvi 1 0 1196083 no rank 1 1063 0 421605 species 2052837 0 1063 Neisseriaceae bacterium DSM 100970 1 4037 Neisseria 12 0 482 62 1 genus species Neisseria lactamica 1 262 0 486 389 1 Neisseria weaveri 0 28091 species 1 Neisseria sp. 10023 189 0 1853278 species species 1 Neisseria zoodegmatis 279 0 326523 0 485 1 Neisseria gonorrhoeae 337 species species 0 490 Neisseria sicca 1 182 0 488 Neisseria mucosa 1 202 species no rank 2 491 0 2623750 species 1 Neisseria sp. 10022 274 0 1853276 species 0 655307 1 Neisseria sp. KEM232 217 186 Neisseria elongata 1 0 495 species species 0 487 Neisseria meningitidis 1 1458 Chromobacteriaceae 13 3422 0 1499392 39 1 family 7 1 genus Pseudogulbenkiania 2 365 0 568394 no rank 0 2642558 358 1 358 1 Pseudogulbenkiania sp. NH8B 0 748280 species 7 1 genus Jeongeupia 2 398 0 885864 no rank 1 391 0 2619593 0 1906741 391 1 Jeongeupia sp. USM3 species 0 168470 321 Laribacter 2 genus 3 1 species 318 1 Laribacter hongkongensis 0 168471 7 1 genus Aquaspirillum 2 366 0 187 0 2620219 1 359 no rank 359 Aquaspirillum sp. LM1 1 0 1938604 species 0 90153 4 1933 no rank 38 1 genus Chromobacterium 4 1933 535 0 1108595 0 789 Chromobacterium vaccinii 1 species 545 1 2641838 0 no rank species Chromobacterium sp. ATCC 53434 1 545 0 2059672 0 536 Chromobacterium violaceum 1 561 species order 1 45 0 206389 22 Rhodocyclales 5152 0 2008794 12 Zoogloeaceae 3756 family 1 38 genus 1 44 33057 0 6 Thauera 1904 331 1 Thauera humireducens 0 1134435 species no rank 2 871 0 2609274 0 85643 457 Thauera sp. MZ1T 1 species species 0 2005884 414 1 Thauera sp. K11 species 96773 0 351 1 Thauera chlorobenzoica 0 59405 1 Thauera aromatica 307 species 5 Azoarcus 1814 12960 0 1 26 genus species 366 1 Azoarcus sp. SY39 0 2067960 no rank 0 2629479 2 995 species 0 198107 Azoarcus sp. CIB 1 507 species 0 748247 488 Azoarcus sp. KH32C 1 species 427 1 Azoarcus olearius 0 418699 2008795 0 3 Azonexaceae 342 family 1 1 Dechloromonas 2 341 0 73029 3 1 genus 0 259537 338 1 Dechloromonas aromatica species family 1 10 0 75787 1009 6 Rhodocyclaceae 8 1 genus 378 Azospira 2 0 146937 species 370 Azospira oryzae 1 0 146939 1 240 0 75788 no rank species 0 1898103 240 1 Rhodocyclaceae bacterium genus 10 1 0 551759 Aromatoleum 2 381 371 Aromatoleum aromaticum 1 0 551760 species no rank 0 119066 8610 12 genus 1 58 0 189384 58 1 Candidatus Tremblaya princeps 189385 0 species genus 4 1 1381133 0 Candidatus Profftella 2 1377 1373 1 Candidatus Profftella armatura 669502 0 species genus 0 1301080 1 254 species 254 Candidatus Nasuia deltocephalinicola 1 0 1160784 genus 14 1 0 33055 6482 Kinetoplastibacterium 6 species 1 Kinetoplastibacterium blastocrithidii 1080 0 233181 species 1095 Candidatus Kinetoplastibacterium galatii 1 0 994695 species 0 994696 1150 Candidatus Kinetoplastibacterium oncopeltii 1 1 Candidatus Kinetoplastibacterium crithidii 1553 0 33056 species species 1590 1 Candidatus Kinetoplastibacterium desouzaii 0 994692 2 Candidatus Accumulibacter 439 0 327159 1 3 genus species 0 327160 436 Candidatus Accumulibacter phosphatis 1 order 68 1 0 32003 Nitrosomonadales 43 11217 4 609 0 2772226 family 0 1778653 283 2 Sulfuriferula genus 1 3 0 2637784 280 1 no rank 1985873 0 280 1 Sulfuriferula sp. AH1 species 326 2 Sulfuricella 0 935200 1 2 genus species Sulfuricella denitrificans 1 324 0 649841 family 1 1 0 2008790 262 Thiobacillaceae 3 1 2 genus 261 2 Thiobacillus 919 0 259 1 Thiobacillus denitrificans 0 36861 species 5 Gallionellaceae 607 0 90627 1 16 family genus 1 6 0 314343 276 2 Sideroxydans 1 Sideroxydans lithotrophicus 270 0 63745 species 8 1 genus 315 Gallionella 2 0 96 species 307 Gallionella capsiferriformans 1 0 370405 0 206379 Nitrosomonadaceae 12 4760 family 22 1 genus 44 1 0 914 Nitrosomonas 7 4065 species 0 44577 Nitrosomonas ureae 1 717 species 274 1 Nitrosomonas europaea 0 915 1468 2 0 2609265 no rank 0 261292 Nitrosomonas sp. Is79A3 1 642 species 826 Nitrosomonas sp. AL212 1 0 153948 species species 0 44574 1 Nitrosomonas communis 956 species Nitrosomonas eutropha 1 606 0 916 genus 1 8 0 35798 4 Nitrosospira 673 species 0 35799 220 Nitrosospira briensis 1 species Nitrosospira multiformis 1 228 0 1231 0 1288494 Nitrosospira lacus 1 217 species 0 2008793 636 5 Sterolibacteriaceae family 1 6 genus 1 5 0 378210 319 2 Methyloversatilis 314 1 0 2639971 no rank species 314 1 Methyloversatilis sp. RAC08 0 1842540 0 1054211 311 Sulfuritalea 2 genus 3 1 Sulfuritalea hydrogenivorans 1 308 0 748811 species 0 32011 4275 13 Methylophilaceae family 1 23 genus 7 1 0 359407 Methylotenera 3 1258 0 359408 485 1 Methylotenera mobilis species 1 Methylotenera versatilis 766 0 1055487 species 0 404 1 236 genus species Methylobacillus flagellatus 1 236 0 405 genus 1 4 0 1679002 3 Candidatus Methylopumilus 1973 1408 1 Candidatus Methylopumilus planktonicus 0 1581557 species species 561 1 Candidatus Methylopumilus turicensis 0 1581680 394 3 Methylovorus 81682 0 1 8 genus 1 211 0 2634027 no rank 0 887061 211 1 Methylovorus sp. MP688 species 0 266009 Methylovorus glucosotrophus 1 175 species 391 Methylophilus 2 0 16 4 1 genus no rank 0 2630143 387 1 species 1662285 0 1 Methylophilus sp. TWE2 387 no rank 0 33809 903 2 0 1904640 371 1 Betaproteobacteria bacterium GR16-43 species beta proteobacterium CB 1 532 543913 0 species 0 1807140 6 1205 class 25 1 order Acidithiobacillales 6 1205 0 225057 5 Acidithiobacillaceae 1180 0 225058 1 27 family genus 10 1 0 119977 Acidithiobacillus 4 1153 0 33059 1 Acidithiobacillus caldus 442 species 920 0 251 1 Acidithiobacillus ferrooxidans species species 160808 0 1 Acidithiobacillus ferrivorans 450 phylum 5 1700 0 68297 0 203486 1700 5 class 1 11 order 5 Dictyoglomales 1700 0 203487 family 5 1 203488 0 1689 Dictyoglomaceae 4 0 13 3 Dictyoglomus 1684 genus 1 3 species Dictyoglomus thermophilum 1 746 0 14 species 0 513050 935 1 Dictyoglomus turgidum 8269 26 0 200783 phylum 8269 26 Aquificae 0 187857 1 35 class order 1 9 0 32069 19 Aquificales 6938 0 64898 3016 Aquificaceae 12 family 11 1 genus 129 1 2713 0 species 129 1 Aquifex aeolicus 0 63363 0 168657 2375 Hydrogenobaculum 6 genus 73 1 no rank 5 2302 0 2622382 species 0 547145 443 1 Hydrogenobaculum sp. SHO 0 547146 Hydrogenobaculum sp. SN 1 443 species species 1 Hydrogenobaculum sp. Y04AAS1 530 0 380749 0 547144 443 1 Hydrogenobaculum sp. HO species species 443 Hydrogenobaculum sp. 3684 1 0 547143 1 4 genus 320 3 Thermocrinis 0 75905 species 75906 0 Thermocrinis ruber 1 165 0 136094 151 1 Thermocrinis albus species genus 181 1 939 0 species 0 940 Hydrogenobacter thermophilus 1 181 no rank 1 267 0 90150 genus 1 267 0 412592 species 267 1 Thermosulfidibacter takaii 0 412593 0 224027 3646 Hydrogenothermaceae 5 family 5 1 1 682 182899 0 genus 682 1 Persephonella marina 0 309805 species 212790 0 Sulfurihydrogenibium 3 2959 genus 17 1 species 0 309806 1295 Sulfurihydrogenibium azorense 1 0 2619248 1647 1 no rank 0 436114 1 Sulfurihydrogenibium sp. YO3AOP1 1647 species 1 6 order 1296 6 Desulfurobacteriales 0 1485951 family 13 1 558314 0 Desulfurobacteriaceae 5 1290 1162 2 Desulfurobacterium 0 64159 1 5 genus 1157 Desulfurobacterium thermolithotrophum 1 0 64160 species 1 1 genus Thermovibrio 2 115 0 171868 1 Thermovibrio ammonificans 114 0 228745 species clade 4 527 0 2498710 0 67814 4 527 phylum 0 693071 527 Caldisericia 4 class 3 1 2 1 order 524 Caldisericales 3 0 693072 family 0 693073 522 2 0 693074 522 2 Caldisericum genus 1 1 Caldisericum exile 1 521 0 693075 species 4 268 0 200938 phylum 4 268 118001 0 class 0 189769 Chrysiogenales 4 268 order 5 1 0 189770 263 Chrysiogenaceae 3 family 1 1 Desulfurispirillum 2 262 0 393029 4 1 genus species 0 936456 1 Desulfurispirillum indicum 258 0 40117 14 2902 phylum 1 18 class 2902 14 Nitrospira 203693 0 20 1 order Nitrospirales 13 2884 189778 0 0 189779 Nitrospiraceae 12 2864 family 15 1 genus 1 3 0 28261 2 Thermodesulfovibrio 1503 species 0 28262 Thermodesulfovibrio yellowstonii 1 1500 770 Nitrospira 5 0 1234 5 1 genus 0 42253 263 1 Nitrospira moscoviensis species species 330214 0 203 Nitrospira defluvii 1 149 Nitrospira japonica 1 0 1325564 species 0 1715989 150 1 Candidatus Nitrospira inopinata species 576 Leptospirillum 4 179 0 3 1 genus 0 261385 155 1 species group species 155 1 Leptospirillum sp. Group II 'CF-1' 0 1660083 species group 174 1 261386 0 species 174 Leptospirillum ferriphilum 1 0 178606 species group 0 655606 244 1 species 244 1 Leptospirillum ferrooxidans 0 180 phylum 714 5 0 1930617 class 1 1 0 1962850 5 Calditrichae 714 4 Calditrichales 713 0 1962852 1 7 order family 4 1 0 1962854 706 Calditrichaceae 3 genus 2 1 0 187144 702 Caldithrix 2 0 187145 700 Caldithrix abyssi 1 species