members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4239374 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4649 5964 29 superkingdom 0 28592 2157 296 1783275 65 clade 0 4777 1 51967 39 0 phylum 0 genus 39 498845 1 0 species 39 498846 1 Candidatus Korarchaeum cryptofilum 2318 1 0 phylum Thaumarchaeota 17 1 651137 class 0 911 1643678 4 2 Nitrososphaerales 1 1033996 324 1 0 order family 0 323 1033997 1 323 0 genus 1 497726 0 species 323 1034015 Nitrososphaera viennensis 1 Candidatus Nitrosocaldales 2 1968909 1 587 order 0 1 586 0 family 1 1968910 498374 1 genus 0 586 species 0 586 2045011 Candidatus Nitrosocaldus islandicus 1 970 order 0 4 Nitrosopumilales 7 31932 1 Nitrosopumilaceae 6 338190 1 966 family 0 2 614 2 0 genus 3 Nitrosopumilus 1 338191 1 Candidatus Nitrosopumilus sediminis 1229909 312 0 species 1 Candidatus Nitrosopumilus adriaticus 1580092 300 species 0 1 0 genus 350 1 1993653 Candidatus Nitrosomarinus 2 1898749 Candidatus Nitrosomarinus catalina 1 0 species 349 436 0 no rank 5 651142 1 1593364 Candidatus Nitrosopelagicus 2 4 genus 0 270 266 0 species Candidatus Nitrosopelagicus brevis 1 1410606 Candidatus Nitrosotenuis 3 1 1825023 166 2 0 genus 76 species 0 Candidatus Nitrosotenuis sp. AQ6f 1 1846278 88 species 0 Candidatus Nitrosotenuis cloacae 1 1603555 47 28889 2420 phylum 0 183924 1 47 Thermoprotei class 0 1 2420 Desulfurococcales 18 1 114380 437 1 order 0 336 5 0 family Desulfurococcaceae 12 1 2272 0 genus 18 54253 1 species 0 18 54254 1 Thermosphaera aggregans 2279 1 Staphylothermus 3 genus 0 2 183 84599 Staphylothermus hellenicus 1 species 0 62 2280 Staphylothermus marinus 1 species 0 119 2 2273 53 genus 0 15 0 species 1 Desulfurococcus mucosus 2275 38 0 species 1 Desulfurococcus amylolyticus 94694 51 1 0 genus Ignicoccus 3 1 54258 Ignicoccus islandicus 1 54259 32 0 species Ignicoccus hospitalis 1 160233 18 0 species 2 Thermogladius 1 477695 26 1 genus 0 species 0 25 1200300 1 Thermogladius calderae Pyrodictiaceae 5 1 2307 100 3 0 family 29 genus 0 1 54251 29 species 0 Pyrolobus fumarii 1 54252 1 genus 0 17 1 2308 Pyrodictium 2 16 0 species 1 Pyrodictium delaneyi 1273541 51 0 genus 1 54247 0 species 51 54248 1 Hyperthermus butylicus order 0 1360 2281 11 11 Sulfolobaceae 1 118883 1360 1 0 family 267 0 genus 1 69655 species 0 267 111955 Sulfolobus tokodaii 1 1 12914 171 0 genus 563177 Acidianus hospitalis 1 species 0 171 0 genus 2 105 41980 1 Metallosphaera 3 61 0 species 1 Metallosphaera cuprina 1006005 species 0 42 43687 Metallosphaera sedula 1 197 0 genus 1 2100760 1 Sulfolobus solfataricus 2287 197 0 species 4 Sulfolobus 2284 1 619 0 genus 3 163 no rank 0 1 2641160 species 0 163 1891280 Sulfolobus sp. A20 1 0 species 135 2285 Sulfolobus acidocaldarius 1 318 0 species Sulfolobus islandicus 1 43080 2266 13 0 order 395 5 114378 145 0 family 1 2268 Thermofilum 5 3 0 genus 145 39 species 0 Thermofilum uzonense 1 1550241 1483572 Thermofilum carboxyditrophus 1 0 species 39 36 0 species Thermofilum adornatus 1 1365176 species 0 28 2269 1 Thermofilum pendens 2267 8 0 family 250 2276 1 genus 0 27 species 0 27 2277 1 Pyrobaculum islandicum Vulcanisaeta 3 1 164450 120 1 genus 0 82 0 species 1 Vulcanisaeta moutnovskia 985052 37 0 species Vulcanisaeta distributa 1 164451 3 Thermoproteus 2270 1 52 0 genus 1 33 0 species 1 Thermoproteus tenax 2271 18 0 species Thermoproteus uzoniensis 1 184117 1 76886 51 genus 0 1 Caldivirga maquilingensis 76887 51 species 0 871006 4 0 order 227 family 0 23 871007 2 23 0 genus 1 Acidilobus 2 105850 1 Acidilobus saccharovorans 1 242703 22 0 species 2 255472 204 family 0 1 200414 Caldisphaera 2 2 0 genus 204 200415 1 Caldisphaera lagunensis 0 species 202 0 clade 35 1783276 1 1 1801631 35 0 phylum 35 0 genus 1 2490204 35 0 species 1 Candidatus Micrarchaeota archaeon Mia14 1920749 23780 0 phylum 230 28890 Thermococci 41 183968 1 2182 class 0 2 order 0 3 2180 2258 1 40 Thermococcales 2259 1 Thermococcaceae 39 family 0 4 2177 genus 0 9 1670 2263 1 Thermococcus 29 685 species 0 Thermococcus siculi 1 72803 2627626 6 0 no rank 173 species 0 25 1042877 1 Thermococcus sp. 4557 25 0 species 1 Thermococcus sp. P6 122420 13 0 species 1 Thermococcus sp. EXT12c 2016361 246969 1 Thermococcus sp. AM4 species 0 31 60 species 0 1 Thermococcus sp. 2319x1 1674923 2008440 1 Thermococcus sp. 5-4 species 0 19 Thermococcus profundus 1 49899 23 0 species 582419 1 Thermococcus paralvinellae species 0 108 0 species 30 187880 Thermococcus radiotolerans 1 Thermococcus piezophilus 1 1712654 16 species 0 55802 1 Thermococcus barophilus 0 species 89 311400 Thermococcus kodakarensis 1 0 species 14 0 species 19 163003 Thermococcus cleftensis 1 2265 1 Thermococcus litoralis 0 species 79 0 species 16 342948 1 Thermococcus onnurineus 27 species 0 1 Thermococcus eurythermalis 1505907 53952 Thermococcus peptonophilus 1 0 species 29 54077 Thermococcus barossii 1 0 species 24 27 species 0 Thermococcus gammatolerans 1 187878 Thermococcus celer 1 2264 39 species 0 0 species 46 54262 1 Thermococcus chitonophagus 71997 Thermococcus gorgonarius 1 species 0 21 Thermococcus thioreducens 1 277988 24 0 species Thermococcus nautili 1 195522 27 0 species 1 Thermococcus sibiricus 172049 97 0 species 110164 Thermococcus guaymasensis 1 0 species 26 71998 1 Thermococcus pacificus species 0 22 2260 1 Pyrococcus 8 genus 0 4 448 96 species 0 1 Pyrococcus furiosus 2261 53953 1 Pyrococcus horikoshii species 0 66 158 no rank 0 2 2629106 1 Pyrococcus sp. NA2 342949 79 0 species species 0 79 1183377 Pyrococcus sp. ST04 1 1 Pyrococcus abyssi 29292 44 0 species 61 species 0 1 Pyrococcus kukulkanii 1609559 species 0 19 1008460 1 Pyrococcus yayanosii 55 genus 0 1 83867 0 species 55 971279 Palaeococcus pacificus 1 183980 8 class 0 406 406 0 order 8 2231 0 family 406 2232 8 0 genus 1 264 2233 1 5 Archaeoglobus Archaeoglobus profundus 1 84156 72 0 species Archaeoglobus fulgidus 1 2234 67 species 0 54 0 species Archaeoglobus veneficus 1 58290 1316941 Archaeoglobus sulfaticallidus 1 0 species 70 58 genus 0 1 54260 species 0 58 54261 Ferroglobus placidus 1 190818 2 genus 0 84 39 species 0 Geoglobus acetivorans 1 565033 0 species 45 113653 1 Geoglobus ahangari 24 2283796 1506 0 clade 183967 21 0 class 1341 no rank 0 61 1234666 1 1495144 1 methanogenic archaeon ISO4-H5 species 0 61 1235850 1 Methanomassiliicoccales 6 0 order 1 401 84 0 family 1 2517203 84 0 genus 1 1291539 Candidatus Methanomethylophilus alvus 1 1291540 84 0 species 1 1577788 Methanomassiliicoccaceae 4 1 0 family 316 genus 0 1 228 1080709 1 Methanomassiliicoccus 2 species 0 227 1406512 1 Candidatus Methanomassiliicoccus intestinalis genus 0 87 1607807 1 species 0 87 1577791 1 Candidatus Methanoplasma termitum 879 order 0 2 Thermoplasmatales 14 2301 1 1 0 family 151 1 46659 Thermoplasmataceae 4 3 Thermoplasma 1 2302 150 1 0 genus 96 species 0 1 Thermoplasma volcanium 50339 2303 1 Thermoplasma acidophilum 0 species 53 2 46630 114 family 0 114 0 genus 1 Picrophilus 2 46631 1 82076 1 Picrophilus torridus 0 species 113 1919231 1 0 no rank 84 84 species 0 1 Thermoplasmatales archaeon BRNA1 1054217 90142 3 family 0 308 74968 1 3 Ferroplasma 0 genus 5 308 0 species 151 97393 Ferroplasma acidarmanus 1 species 0 152 74969 Ferroplasma acidiphilum 1 Cuniculiplasmataceae 3 1 1747776 220 2 0 family Cuniculiplasma 2 1747777 1 218 0 genus 4 1 Cuniculiplasma divulgatum 1673428 214 0 species 1803510 3 clade 0 165 1 379546 3 Aciduliprofundum 2 0 genus 165 101 0 species Aciduliprofundum boonei 1 379547 2633939 1 no rank 0 62 1 Aciduliprofundum sp. MAR08-339 673860 62 0 species 2283794 43 clade 0 7595 1 183925 Methanobacteria 24 4 0 class 3659 3 0 order 3655 1 2158 23 Methanobacteriales 3418 family 0 21 2159 1 2316 388 genus 0 388 0 species Methanosphaera stadtmanae 1 2317 Methanobrevibacter 7 1 2172 1799 8 0 genus 83816 1 Methanobrevibacter ruminantium 0 species 219 Methanobrevibacter millerae 1 230361 342 0 species 294671 Methanobrevibacter olleyae 1 0 species 429 318 species 0 Methanobrevibacter smithii 1 2173 no rank 0 483 2638681 2 0 species 213 1609968 1 Methanobrevibacter sp. YE315 270 0 species 1 Methanobrevibacter sp. AbM4 224719 1042 5 0 genus 8 Methanobacterium 1 2160 59277 1 Methanobacterium subterraneum species 0 123 868131 Methanobacterium paludis 1 0 species 166 2 2627676 236 no rank 0 0 species 123 1911685 1 Methanobacterium sp. MZ-A1 0 species 113 1379702 Methanobacterium sp. MB1 1 2162 Methanobacterium formicicum 1 0 species 138 877455 Methanobacterium lacus 1 0 species 254 0 species 120 118062 Methanobacterium congolense 1 1 145260 5 Methanothermobacter 3 genus 0 189 0 species 46 145263 1 Methanothermobacter marburgensis 2631116 1 0 no rank 55 species 0 55 866790 1 Methanothermobacter sp. CaT2 species 0 38 145262 1 Methanothermobacter thermautotrophicus 47 species 0 1 Methanothermobacter wolfeii 145261 family 0 234 2178 1 2179 1 genus 0 234 234 0 species 1 Methanothermus fervidus 2180 Methanococci 19 1 183939 3936 4 0 class 18 Methanococcales 1 2182 3932 4 order 0 Methanocaldococcaceae 10 1 196117 1703 4 0 family 1476 genus 0 14 Methanocaldococcus 7 196118 1 Methanocaldococcus fervens 1 83171 267 0 species 295 species 0 Methanocaldococcus bathoardescens 1 1301915 1 Methanocaldococcus infernus 67760 152 0 species 1 Methanocaldococcus jannaschii 2190 254 species 0 1 2641196 288 no rank 0 Methanocaldococcus sp. FS406-22 1 644281 288 species 0 73913 Methanocaldococcus vulcanius 1 0 species 206 1 196119 2 Methanotorris 1 0 genus 223 1 Methanotorris igneus 2189 222 0 species 2225 0 family 4 Methanococcaceae 7 2183 1 1 155862 237 0 genus 1 Methanothermococcus okinawensis 155863 237 0 species 1 2184 Methanococcus 5 4 0 genus 1984 species 0 1109 39152 1 Methanococcus maripaludis 1 Methanococcus voltae 2188 380 species 0 1 Methanococcus vannielii 2187 240 0 species 251 0 species 1 Methanococcus aeolicus 42879 clade 0 12091 2290931 114 7131 class 0 22 63 Halobacteria 183963 1 Halobacteriales 26 1 2235 1247 6 0 order 3 family 0 448 1 2236 10 Halobacteriaceae 1 0 genus 39 1 1980514 Halodesulfurarchaeum 2 38 species 0 1 Halodesulfurarchaeum formicicum 1873524 39 0 genus 1 Halanaeroarchaeum 2 1656823 1 0 species 38 1604004 1 Halanaeroarchaeum sulfurireducens 0 genus 4 294 2239 1 4 Halobacterium 1 Halobacterium salinarum 2242 67 0 species 0 no rank 115 2668073 1 species 0 115 751944 1 Halobacterium sp. DL1 Halobacterium hubeiense 1 1407499 108 0 species 1 332246 73 genus 0 73 species 0 Halalkalicoccus jeotgali 1 413810 793 0 family 5 Haloarculaceae 15 1963268 1 Halorhabdus 3 1 146825 101 3 genus 0 0 species 45 146826 Halorhabdus utahensis 1 430914 Halorhabdus tiamatea 1 species 0 53 183 genus 0 1 Natronomonas 3 63743 1 1 Natronomonas pharaonis 2257 83 species 0 0 species 99 416273 Natronomonas moolapensis 1 1 2237 5 Haloarcula 4 0 genus 328 Haloarcula taiwanensis 1 1932004 89 0 species 2624677 1 no rank 0 82 82 species 0 1 Haloarcula sp. CBA1115 1592728 1 Haloarcula hispanica 51589 78 0 species 1 Haloarcula marismortui 2238 75 species 0 71 genus 0 1 Halomicrobium 2 203135 1 0 species 70 57705 1 Halomicrobium mukohataei genus 0 105 1073987 1 2648975 1 0 no rank 105 105 0 species 1 Halorientalis sp. IM1011 1932360 33 0 order 2784 1 1644055 Haloferacales 17 Halorubraceae 6 1 1963271 563 1 0 family 0 genus 2 119 1209988 1 Halopenitus 2 Halopenitus persicus 1 1048396 117 0 species 210 0 genus 2 56688 0 species 107 29284 Halorubrum trapanicum 1 species 0 103 2247 Halorubrum lacusprofundi 1 233 0 genus 1 1644057 233 species 0 Salinigranum rubrum 1 755307 1 1644056 9 Haloferacaceae 5 0 family 2094 0 genus 1 65 60846 1 2 Halogeometricum 0 species 64 60847 Halogeometricum borinquense 1 1508 1 0 genus Haloquadratum 2 1 293431 1 Haloquadratum walsbyi 293091 1507 0 species 1 2251 Haloferax 4 2 genus 0 516 2252 Haloferax mediterranei 1 0 species 105 221 species 0 1 Haloferax gibbonsii 35746 2246 Haloferax volcanii 1 0 species 188 2678336 1 0 no rank 94 94 species 0 halophilic archaeon DL31 1 756883 1 1644060 19 Natrialbales 21 0 order 3078 3057 family 0 14 Natrialbaceae 18 1644061 1 genus 0 143 387342 1 387343 1 Halopiger xanaduensis 0 species 143 1 0 genus 105 1 29287 2 Natronococcus 29288 1 Natronococcus occultus 0 species 104 0 genus 84 353799 1 353800 Halostagnicola larsenii 1 species 0 84 2 Natronobacterium 1 2256 123 1 0 genus 122 0 species 1 Natronobacterium gregoryi 44930 1269201 1 2 Salinarchaeum 0 genus 1 96 0 no rank 95 2621923 1 Salinarchaeum sp. Harcht-Bsk1 1 1333523 95 species 0 282 1 0 genus 2 Halobiforma 1 203193 281 species 0 Halobiforma lacisalsi 1 229731 2 genus 0 352 1 121871 Haloterrigena 3 62320 Haloterrigena turkmenica 1 0 species 146 Haloterrigena daqingensis 1 588898 204 0 species genus 0 216 88723 2 85 0 no rank 1 2622230 1 Natrinema sp. J7-2 406552 85 species 0 131 species 0 1 Natrinema pellirubrum 69525 Natrialba 2 1 63742 1642 2 genus 0 1640 species 0 Natrialba magadii 1 13769 224756 1 51 Methanomicrobia class 0 3 4960 29 Methanosarcinales 94695 1 4226 order 0 12 family 0 4 4021 2206 1 Methanosarcinaceae 25 2 Methanomethylovorans 101191 1 88 genus 0 2 101192 1 Methanomethylovorans hollandica species 0 86 2225 2 genus 0 240 Methanococcoides burtonii 1 29291 97 0 species 0 species 143 2226 Methanococcoides methylutens 1 3 Methanohalophilus 1 2175 246 1 0 genus 125 0 species Methanohalophilus mahii 1 2176 Methanohalophilus halophilus 1 2177 120 species 0 1 2220 89 0 genus species 0 89 420950 Methanolobus psychrophilus 1 genus 0 10 2936 2207 1 Methanosarcina 13 2208 1 Methanosarcina barkeri 0 species 725 2214 Methanosarcina acetivorans 1 0 species 140 38027 1 Methanosarcina siciliae 0 species 388 1 Methanosarcina vacuolata 2215 213 0 species species 0 158 418008 Methanosarcina horonobensis 1 170861 Methanosarcina lacustris 1 species 0 191 625 no rank 0 4 2644672 Methanosarcina sp. Kolksee 1 1434099 191 species 0 124 species 0 Methanosarcina sp. WH1 1 1434102 1 Methanosarcina sp. WWM596 1434103 133 0 species 177 0 species 1 Methanosarcina sp. MTP4 1434100 339 species 0 Methanosarcina mazei 1 2209 0 species 147 2210 1 Methanosarcina thermophila genus 0 258 2321 1 258 0 species Methanohalobium evestigatum 1 2322 1 196136 Methanosalsum 2 1 0 genus 160 1 Methanosalsum zhilinae 39669 159 0 species 0 family 193 143067 3 3 genus 0 193 1 2222 Methanothrix 3 Methanosaeta harundinacea 1 301375 102 0 species species 0 88 2223 1 Methanothrix soehngenii 2191 1 Methanomicrobiales 17 0 order 5 547 196137 2 family 0 91 91 0 genus 5 Methanospirillum 2 2202 1 2203 Methanospirillum hungatei 1 species 0 86 1 2194 7 Methanomicrobiaceae 2 0 family 258 genus 0 3 180 45989 1 Methanoculleus 4 54 no rank 0 1 2619537 54 species 0 1 Methanoculleus sp. MAB1 86622 Methanoculleus marisnigri 1 2198 58 0 species 1 Methanoculleus bourgensis 83986 65 species 0 76 3 genus 0 2 Methanolacinia 1 230355 73 species 0 Methanolacinia petrolearia 1 54120 45 family 0 2 88404 1 2192 Methanocorpusculum 2 3 genus 0 45 42 0 species Methanocorpusculum labreanum 1 83984 Methanoregulaceae 5 1198451 1 148 family 0 4 1 0 genus 47 1 475087 Methanosphaerula 2 475088 Methanosphaerula palustris 1 0 species 46 genus 0 97 395331 2 63 0 species 1 Methanoregula boonei 358766 0 species 34 882104 1 Methanoregula formicica 184 1 order 0 Methanocellales 4 1 570264 3 570265 183 family 0 genus 0 1 183 570266 1 Methanocella 3 1175444 1 Methanocella conradii species 0 43 139 0 species Methanocella arvoryzae 1 1175445 0 name 0 1 superkingdom 0 20 4204818 2 1 4323 Bacteria 2422 phylum 0 10 200930 Deferribacteres 10 68337 1 2422 class 0 6 0 order 9 2416 191393 1 9 Deferribacterales 8 Deferribacteraceae 1 191394 2407 9 family 0 genus 0 1 1155 53572 1 2 Deferribacter 197162 1 Deferribacter desulfuricans species 0 1154 1 117999 Denitrovibrio 2 2 genus 0 283 0 species 281 118000 1 Denitrovibrio acetiphilus 1 2351 2 Flexistipes 1 genus 0 515 Flexistipes sinusarabici 1 2352 514 species 0 1 545865 445 0 genus Calditerrivibrio nitroreducens 1 477976 445 0 species 0 phylum 14233 203691 55 25 0 class 14233 1 203692 Spirochaetia 55 1643688 8 0 order 2217 1 170 Leptospiraceae 8 29 family 0 2217 genus 0 114 338321 1 0 species 114 29510 1 Turneriella parva 8 0 genus 2074 1 171 Leptospira 6 0 species 211 28452 1 Leptospira alstonii 173 1 Leptospira interrogans 0 species 867 174 Leptospira borgpetersenii 1 species 0 397 0 species 392 172 1 Leptospira biflexa 28183 1 Leptospira santarosai 0 species 199 order 0 21 8567 136 1 Spirochaetales 39 21 Spirochaetaceae 137 1 2585 family 0 20 0 genus 342 1616789 1 species 0 342 1307761 1 Salinispira pacifica 3 Spirochaeta 146 1 230 genus 0 1 46355 Spirochaeta africana 1 0 species 106 154 Spirochaeta thermophila 1 species 0 123 399320 3 0 genus 273 273376 Sphaerochaeta coccoides 1 0 species 108 1 Sphaerochaeta globosa 1131703 69 0 species 96 species 0 1 Sphaerochaeta pleomorpha 1131707 1 157 12 Treponema 7 genus 0 1560 Treponema primitia 1 88058 155 species 0 species 0 38 160 1 Treponema pallidum 158 Treponema denticola 1 species 0 203 species 0 145 215591 1 Treponema caldarium 215 0 species 1 Treponema putidum 221027 Treponema paraluiscuniculi 1 53435 53 0 species 82 species 0 Treponema brennaborense 1 81028 species 0 107 150829 1 Treponema azotonutricium 227 species 0 1 Treponema pedis 409322 2638727 1 no rank 0 87 87 species 0 1 Treponema sp. OMZ 838 1539298 241 species 0 1 Treponema succinifaciens 167 1 1911556 160 genus 0 160 0 species Sediminispirochaeta smaragdinae 1 55206 1643685 1 Borreliaceae 17 family 0 10 5961 3219 51 genus 0 Borrelia 8 1 138 0 species 306 143 1 Borrelia anserina 44449 1 Borrelia recurrentis 0 species 463 140 Borrelia hermsii 1 species 0 322 715 species 0 Borrelia miyamotoi 1 47466 715 species 0 1 Borrelia duttonii 40834 1 Borrelia parkeri 141 317 species 0 330 0 species Borrelia turicatae 1 142 2732 0 genus 149 Borreliella 8 64895 1 604 0 species Borreliella garinii 1 29519 Borreliella bavariensis 1 664662 243 0 species 62088 Borreliella valaisiana 1 species 0 287 species 0 313 64897 1 Borreliella bissettii 412 0 species Borreliella burgdorferi 1 139 29518 Borreliella afzelii 1 0 species 385 species 0 339 1674146 Borrelia mayonii 1 3424 order 0 12 Brachyspirales 7 1643686 1 143786 1 Brachyspiraceae 6 0 family 3 3412 29521 1 Brachyspira 5 genus 0 15 3409 724 0 species Brachyspira murdochii 1 84378 52584 Brachyspira pilosicoli 1 species 0 955 species 0 844 84377 1 Brachyspira intermedia 159 Brachyspira hyodysenteriae 1 species 0 871 1930617 4 0 phylum 312 0 class 312 1962850 4 1 1962852 Calditrichales 4 2 0 order 312 Calditrichaceae 3 1 1962854 310 2 family 0 187144 1 Caldithrix 2 genus 0 1 308 species 0 307 187145 1 Caldithrix abyssi 4 2138240 105 0 phylum 2138243 1 Coprothermobacteria 4 class 0 1 105 2138246 3 0 order 104 3 Coprothermobacteraceae 2138247 1 104 family 0 1 103 1 genus 0 Coprothermobacter 2 1 68335 35786 Coprothermobacter proteolyticus 1 species 0 102 995 0 phylum 6 68297 995 class 0 2 Dictyoglomia 6 203486 1 993 1 0 order Dictyoglomales 5 1 203487 992 family 0 2 Dictyoglomaceae 4 203488 1 990 0 genus 5 3 Dictyoglomus 13 1 0 species 529 513050 1 Dictyoglomus turgidum species 0 456 14 1 Dictyoglomus thermophilum 14 40117 1523 0 phylum 0 class 10 1523 203693 1 Nitrospira 14 order 0 13 1513 189778 1 13 Nitrospirales Nitrospiraceae 12 189779 1 1500 0 family 6 genus 0 6 306 179 1 4 Leptospirillum 261386 1 species group 0 96 0 species 96 178606 1 Leptospirillum ferriphilum 261385 1 0 species group 76 1660083 1 Leptospirillum sp. Group II 'CF-1' species 0 76 1 655606 128 species group 0 1 Leptospirillum ferrooxidans 180 128 0 species 803 genus 0 2 2 Thermodesulfovibrio 28261 1 1 Thermodesulfovibrio yellowstonii 28262 801 species 0 1234 1 Nitrospira 5 genus 0 6 385 120 0 species Nitrospira moscoviensis 1 42253 1715989 1 Candidatus Nitrospira inopinata 0 species 62 86 species 0 1 Nitrospira japonica 1325564 0 species 111 330214 Nitrospira defluvii 1 1631 1783272 3241558 0 clade 2040 phylum 0 2 Chloroflexi 34 200795 1 1 32061 Chloroflexia 10 2 0 class 738 1 32064 9 Chloroflexales 6 0 order 736 suborder 0 299 1508595 4 1 1508635 Roseiflexaceae 4 1 0 family 299 Roseiflexus 3 120961 1 298 0 genus 1 Roseiflexus castenholzii 1 120962 147 species 0 0 no rank 150 2609473 1 357808 Roseiflexus sp. RS-1 1 species 0 150 431 suborder 0 4 1508594 0 family 431 1106 4 431 4 0 genus Chloroflexus 4 1 1107 Chloroflexus aggregans 1 152260 177 0 species 250 species 0 125 Chloroflexus aurantiacus 2 1108 1 1 Chloroflexus sp. Y-400-fl 480224 125 0 strain 3 class 0 228 1 189775 Thermomicrobia 5 order 0 62 189776 2 family 0 62 189777 2 1 499 2 Thermomicrobium 1 genus 0 62 61 0 species 1 Thermomicrobium roseum 500 subclass 0 163 85000 2 163 3 order 0 2 Sphaerobacterales 1 85001 255728 1 suborder 0 160 family 0 160 85002 1 1 2056 160 0 genus 160 species 0 1 Sphaerobacter thermophilus 2057 3 Ardenticatenia 1 1382928 307 1 class 0 Ardenticatenales 2 1382929 1 306 order 0 2 1382930 1 family 0 304 1 1988031 304 0 genus 304 0 species Candidatus Promineofilum breve 1 1806508 1 301297 Dehalococcoidia 7 5 0 class 377 138 4 genus 0 Dehalogenimonas 3 1 670486 76 0 species Dehalogenimonas formicexedens 1 1839801 58 0 species 1 Dehalogenimonas lykanthroporepellens 552810 order 0 234 1202465 3 234 0 family 3 1202464 1 61434 3 Dehalococcoides 3 genus 0 234 48 no rank 0 1 237581 species 0 48 1522671 Dehalococcoides sp. UCH007 1 1 Dehalococcoides mccartyi 61435 183 0 species 475962 3 0 class 141 1 order 0 141 1 475963 Caldilineales 3 2 475964 140 0 family Caldilinea 2 233191 1 140 0 genus 6 134 0 species 1 Caldilinea aerophila 133453 247 0 class 5 292625 1 0 order 247 1 292629 Anaerolineales 5 246 3 0 family Anaerolineaceae 4 1 292628 genus 0 79 233189 1 79 0 species 1 Anaerolinea thermophila 167964 2019482 1 genus 0 105 Brevefilum fermentans 1 1986204 105 0 species 59 0 no rank 1 1324991 Anaerolineaceae bacterium oral taxon 439 1 1889813 59 species 0 213760 62 0 phylum Firmicutes 686 1 1239 1 91061 Bacilli 426 123 class 0 125056 86815 0 order 187 262 Bacillales 1385 1 11933 34 0 family Paenibacillaceae 46 1 186822 123 0 genus 1 2 Thermobacillus 76632 1 377615 1 Thermobacillus composti species 0 122 1 55080 4 Brevibacillus 8 0 genus 1288 species 0 705 1465 1 Brevibacillus laterosporus Brevibacillus formosus 1 54913 228 species 0 species 0 347 1393 1 Brevibacillus brevis 3 85151 369 no rank 0 369 genus 0 2 Aneurinibacillus 3 55079 1 0 no rank 185 2642329 1 1450761 Aneurinibacillus sp. XH2 1 species 0 185 182 species 0 Aneurinibacillus soli 1 1500254 64 0 genus 10119 1 44249 Paenibacillus 36 1 Paenibacillus peoriae 59893 254 species 0 280 0 species Paenibacillus bovis 1 1616788 Paenibacillus sabinae 1 365617 110 0 species 235 species 0 1 Paenibacillus graminis 189425 414771 Paenibacillus donghaensis 1 species 0 582 94 species 0 Paenibacillus stellifer 1 169760 300 species 0 Paenibacillus odorifer 1 189426 0 species 161 1870820 1 Paenibacillus ihbetae 136 species 0 Paenibacillus beijingensis 1 1126833 44251 1 Paenibacillus durus species 0 406 species 0 134 1462996 1 Paenibacillus yonginensis Paenibacillus swuensis 1 1178515 136 0 species 0 species 366 1464 1 Paenibacillus larvae 1763538 1 Paenibacillus crassostreae species 0 337 0 species group 193 2044880 1 193 0 species Paenibacillus riograndensis 1 483937 1 Paenibacillus kribbensis 172713 174 0 species 185978 13 no rank 0 3490 0 species 354 1536769 1 Paenibacillus sp. FSL P4-0081 1 Paenibacillus sp. 32O-W 1695218 135 0 species Paenibacillus sp. FSL R7-0331 1 1536773 160 species 0 species 0 202 1536774 1 Paenibacillus sp. FSL H7-0357 1566358 Paenibacillus sp. IHBB 10380 1 0 species 821 1536775 Paenibacillus sp. FSL H7-0737 1 0 species 278 1 Paenibacillus sp. FSL R5-0345 1536770 457 species 0 species 0 203 2069255 Paenibacillus sp. lzh-N1 1 1870819 Paenibacillus sp. BIHB4019 1 0 species 306 1 Paenibacillus sp. FSL R5-0912 1536771 179 species 0 0 species 124 481743 Paenibacillus sp. Y412MC10 1 1536772 1 Paenibacillus sp. FSL R7-0273 species 0 159 Paenibacillus sp. JDR-2 1 324057 112 species 0 1406 1 Paenibacillus polymyxa 0 species 1547 species 0 114 162209 Paenibacillus naphthalenovorans 1 196 species 0 Paenibacillus xylanexedens 1 528191 Paenibacillus mucilaginosus 1 61624 436 0 species 1 Paenibacillus borealis 160799 208 species 0 1 Paenibacillus terrae 159743 166 0 species Planococcaceae 27 1 186818 6255 22 family 0 283 0 genus 2 Rummeliibacillus 2 648802 1 species 0 281 241244 Rummeliibacillus stabekisii 1 Planococcus 12 1372 1 2882 0 genus 32 161360 1 Planococcus antarcticus 0 species 189 Planococcus rifietoensis 1 200991 126 0 species Planococcus kocurii 1 1374 304 0 species species 0 348 1215089 1 Planococcus halocryophilus 244 0 species Planococcus maritimus 1 192421 399 0 species Planococcus sp. L10.15 1 1302659 0 no rank 506 2662419 2 2058136 1 Planococcus sp. MB-3u-03 0 species 171 335 0 species 1 Planococcus sp. PAMC 21323 1526927 414778 Planococcus donghaensis 1 0 species 344 1038856 Planococcus plakortidis 1 0 species 65 325 species 0 Planococcus faecalis 1 1598147 0 genus 4 281 157226 1 Jeotgalibacillus 2 species 0 277 1508404 1 Jeotgalibacillus malaysiensis 1500 0 genus 10 Sporosarcina 5 1569 1 1476 Sporosarcina psychrophila 1 species 0 414 1571 1 Sporosarcina ureae 0 species 782 294 0 no rank 2 2647733 1930546 1 Sporosarcina sp. P37 species 0 144 Sporosarcina sp. P33 1 1930764 150 0 species 648800 1 Solibacillus 3 genus 0 3 850 76853 Solibacillus silvestris 1 0 species 468 2637870 1 no rank 0 379 379 0 species 1 Solibacillus sp. R5-41 2048654 Kurthia 2 1649 1 437 genus 0 10 2644826 1 0 no rank 427 species 0 427 1750719 1 Kurthia sp. 11kri321 1 186820 Listeriaceae 9 3 family 0 2841 Brochothrix 2 2755 1 347 0 genus 1 1 Brochothrix thermosphacta 2756 346 0 species 2491 genus 0 17 Listeria 6 1637 1 1639 1 Listeria monocytogenes 0 species 967 1643 Listeria welshimeri 1 species 0 357 299 species 0 Listeria innocua 1 1642 1640 1 Listeria seeligeri 0 species 284 1 Listeria ivanovii 1638 567 0 species 9 539002 1117 0 no rank 539738 2 no rank 0 408 1 1378 2 Gemella 5 0 genus 408 2624949 1 0 no rank 403 403 species 0 Gemella sp. oral taxon 928 1 1785995 709 0 no rank 7 539742 709 0 genus 10 Exiguobacterium 7 33986 1 Exiguobacterium antarcticum 1 132920 81 0 species 1 Exiguobacterium sibiricum 332410 118 species 0 4 2644629 500 no rank 0 158 species 0 Exiguobacterium sp. ZWU0009 1 1224749 species 0 103 1399115 Exiguobacterium sp. MH3 1 150 species 0 Exiguobacterium sp. U13-1 1 1849031 species 0 89 360911 Exiguobacterium sp. AT1b 1 3 family 0 625 1 186823 Alicyclobacillaceae 9 299 1 genus 0 3 Tumebacillus 1 432330 Tumebacillus algifaecis 1 1214604 88 0 species 1903704 Tumebacillus avium 1 0 species 210 Alicyclobacillus 2 29330 1 137 0 genus 1 species 0 136 405212 1 Alicyclobacillus acidocaldarius 186 2 0 genus Kyrpidia 3 1 1129704 98 species 0 Kyrpidia tusciae 1 33943 species 0 86 2055160 Kyrpidia sp. EA-1 1 0 family 40 18369 90964 1 41 Staphylococcaceae 17106 142 genus 0 33 Staphylococcus 1 1279 1 Staphylococcus nepalensis 214473 510 0 species 46127 Staphylococcus felis 1 0 species 347 0 species 509 985002 1 Staphylococcus argenteus 476 species 0 1 Staphylococcus capitis 29388 1296 1 Staphylococcus sciuri species 0 548 147 0 species 1 Staphylococcus pettenkoferi 170573 1 Staphylococcus epidermidis 1282 1049 species 0 0 species 502 29385 Staphylococcus saprophyticus 1 437 species 0 1 Staphylococcus condimenti 70255 0 species 436 61015 Staphylococcus succinus 1 Staphylococcus xylosus 1 1288 926 0 species 1 Staphylococcus hominis 1290 494 0 species Staphylococcus aureus 1 1280 1710 species 0 1 Staphylococcus equorum 246432 669 species 0 Staphylococcus lutrae 1 155085 308 0 species 1 Staphylococcus piscifermentans 70258 267 0 species 643214 Staphylococcus stepanovicii 1 0 species 479 1 Staphylococcus agnetis 985762 354 species 0 1284 Staphylococcus hyicus 1 0 species 286 1294 1 Staphylococcus muscae 0 species 188 1286 Staphylococcus simulans 1 0 species 371 29384 Staphylococcus kloosii 1 0 species 481 Staphylococcus simiae 1 308354 619 0 species Staphylococcus lugdunensis 1 28035 462 0 species 0 species 612 1283 Staphylococcus haemolyticus 1 species 0 493 29382 1 Staphylococcus cohnii 1 Staphylococcus carnosus 1281 403 species 0 1 Staphylococcus pasteuri 45972 1162 0 species Staphylococcus pseudintermedius 1 283734 325 0 species 1292 1 Staphylococcus warneri 0 species 531 1295 1 Staphylococcus schleiferi 0 species 370 no rank 0 493 91994 1 1715860 Staphylococcus sp. AntiMn-1 1 species 0 493 303 genus 0 2 2 Auricoccucs 2005363 1 Auricoccus indicus 1 1849491 301 species 0 Macrococcus 4 1 69965 811 6 genus 0 1855823 1 Macrococcus canis 0 species 220 1 2619255 345 0 no rank 0 species 345 1898474 1 Macrococcus sp. IME1552 1 Macrococcus caseolyticus 69966 240 species 0 0 genus 109 45669 1 109 species 0 Salinicoccus halodurans 1 407035 45291 0 family 71 Bacillaceae 116 186817 1 2 2675230 936 genus 0 363 0 species 1 Bacillus oceanisediminis 665099 573 0 species Bacillus kochii 1 859143 333 0 genus 1 1055323 333 species 0 1 Aeribacillus pallidus 33936 1 1906945 296 genus 0 0 species 296 1426 Parageobacillus thermoglucosidasius 1 0 genus 990 2675229 2 264697 Bacillus muralis 1 species 0 234 Bacillus simplex 1 1478 756 species 0 179 genus 0 1 2 Lentibacillus 175304 1 1472767 1 Lentibacillus amyloliquefaciens species 0 178 68 0 genus 1915 1 129337 Geobacillus 15 4 1505648 536 species group 0 260 species 0 1 Geobacillus thermoleovorans 33941 species 0 97 33938 Geobacillus thermocatenulatus 1 1462 1 Geobacillus kaustophilus species 0 102 0 species 77 169283 1 Geobacillus lituanicus 802 0 no rank 6 2642459 0 species 42 550542 1 Geobacillus sp. Y412MC52 Geobacillus sp. C56-T3 1 691437 134 0 species 0 species 44 1233873 Geobacillus sp. GHH01 1 1 Geobacillus sp. Y4.1MC1 581103 253 0 species 282 species 0 1 Geobacillus sp. WCH70 471223 species 0 47 544556 1 Geobacillus sp. Y412MC61 68 0 species 1 Geobacillus genomosp. 3 1921421 Geobacillus subterraneus 1 129338 90 species 0 1 Geobacillus stearothermophilus 1422 157 0 species 194 species 0 Geobacillus thermodenitrificans 1 33940 genus 0 9 1630 150247 1 Anoxybacillus 6 species 0 504 33934 1 Anoxybacillus flavithermus 277 0 species Anoxybacillus gonensis 1 198467 278 species 0 Anoxybacillus amylolyticus 1 294699 562 no rank 0 2 2639704 0 species 290 1490052 Anoxybacillus sp. B2M1 1 272 species 0 1 Anoxybacillus sp. B7M1 1490057 45667 1 Halobacillus 3 genus 0 5 507 1570 Halobacillus halophilus 1 species 0 237 402384 Halobacillus mangrovi 1 species 0 265 1 351195 120 genus 0 Salimicrobium jeotgali 1 1230341 120 0 species 1 182709 989 0 genus 182710 1 Oceanobacillus iheyensis species 0 989 Lysinibacillus 5 400634 1 2568 0 genus 23 Lysinibacillus sphaericus 1 1421 1277 0 species 426 0 species Lysinibacillus varians 1 1145276 1 2636778 432 0 no rank 1 Lysinibacillus sp. YS11 2072025 432 species 0 28031 1 Lysinibacillus fusiformis 0 species 410 3 0 genus 374 1 29331 2 Amphibacillus 1449 Amphibacillus xylanus 1 0 species 371 0 genus 527 28894 1386 1 Bacillus 58 0 species group 3046 653685 9 1423 1 Bacillus subtilis species 0 1190 194 0 species 1 Bacillus paralicheniformis 1648923 0 species 141 119858 Bacillus sonorensis 1 1452 Bacillus atrophaeus 1 0 species 313 72361 Bacillus vallismortis 1 species 0 37 884 0 species subgroup 3 1938374 0 species 417 1390 1 Bacillus amyloliquefaciens 492670 1 Bacillus velezensis species 0 407 species 0 60 659243 Bacillus siamensis 1 1402 1 Bacillus licheniformis 0 species 287 561879 1 Bacillus safensis species 0 531 0 species group 13862 86661 10 1141 no rank 0 3 2750818 Bacillus sp. ABP14 1 1892404 327 species 0 Bacillus sp. HBCD-sjtu 1 2053832 324 species 0 Bacillus sp. FDAARGOS_235 1 1839798 490 0 species Bacillus cytotoxicus 1 580165 436 0 species 658666 Bacillus bombysepticus 1 species 0 455 361 species 0 1 Bacillus toyonensis 155322 1392 Bacillus anthracis 1 species 0 654 1405 1 Bacillus mycoides species 0 1483 0 species 4787 1396 Bacillus cereus 1 1 Bacillus thuringiensis 1428 4545 species 0 species 0 1485 1404 Bacillus megaterium 1 1792192 1 0 species group 297 297 0 species Bacillus altitudinis 1 293387 1 Bacillus aryabhattai 412384 393 species 0 2708 0 no rank 19 185979 69 species 0 1 Bacillus sp. SDLI1 1774743 Bacillus sp. IHB B 7164 1 1827146 358 0 species 2026248 Bacillus sp. 1s-1 1 0 species 160 Bacillus sp. MD-5 1 2009331 88 0 species 0 species 50 1409 Bacillus sp. (in: Bacteria) 1 species 0 126 1837130 1 Bacillus sp. FJAT-14266 0 species 29 1570330 1 Bacillus sp. BH072 1 Bacillus sp. OxB-1 98228 110 0 species 2049935 Bacillus sp. Lzh-5 1 0 species 30 1127744 Bacillus sp. JS 1 species 0 92 1565991 1 Bacillus sp. X1(2014) species 0 398 159 species 0 Bacillus sp. H15-1 1 1856406 756828 1 Bacillus sp. WP8 species 0 251 67 species 0 Bacillus sp. 275 1 1941347 Bacillus sp. LM 4-2 1 1628753 51 species 0 60 species 0 Bacillus sp. Pc3 1 1446792 1 Bacillus sp. SJ-10 563169 53 species 0 1574141 Bacillus sp. YP1 1 0 species 39 1 Bacillus sp. 1NLA3E 666686 518 0 species Bacillus smithii 1 1479 271 species 0 135735 1 Bacillus endophyticus 0 species 609 Bacillus flexus 1 86664 469 0 species species 0 662 33932 1 Bacillus cohnii 79883 1 Bacillus horikoshii species 0 296 42 0 species 1 Bacillus gibsonii 79881 1 Bacillus pumilus 1408 1038 species 0 species 0 599 1413 Bacillus cellulosilyticus 1 1 Bacillus methanolicus 1471 415 species 0 Bacillus infantis 1 324767 163 species 0 1664069 Bacillus glycinifermentans 1 species 0 245 Bacillus beveridgei 1 632773 114 0 species 1 Bacillus coagulans 1398 326 0 species Bacillus xiamenensis 1 1178537 218 0 species 578 species 0 Bacillus weihaiensis 1 1547283 0 genus 1 593 1329200 1 Fictibacillus 3 species 0 278 255247 1 Fictibacillus arsenicus 1221500 1 Fictibacillus phosphorivorans 0 species 314 1929 genus 0 5 2675234 1 Bacillus clausii 79880 368 species 0 0 species 563 199441 Bacillus krulwichiae 1 86665 Bacillus halodurans 1 0 species 185 Bacillus lehensis 1 300825 396 species 0 417 0 species 1 Bacillus pseudofirmus 79885 Virgibacillus 7 84406 1 2783 0 genus 13 473 0 species 1 Virgibacillus necropolis 163877 1473 1 Virgibacillus pantothenticus 0 species 573 381 0 species 1 Virgibacillus phasianinus 2017483 1 Virgibacillus halodenitrificans 1482 423 species 0 2 2620237 920 0 no rank 0 species 517 1911587 1 Virgibacillus sp. 6R 1 Virgibacillus sp. SK37 403957 403 0 species 184 genus 0 1 459532 species 0 184 586416 Terribacillus aidingensis 1 1 186821 125 0 family 1 663587 125 0 no rank 0 species 125 85683 [Bacillus] selenitireducens 1 186824 1 Thermoactinomycetaceae 3 family 0 2 72 2 Novibacillus 1677050 1 70 0 genus 2 0 species 68 1471761 1 Novibacillus thermophilus Lactobacillales 163 186826 1 38118 order 0 104 Leuconostocaceae 17 1 81850 2801 5 0 family 201 0 genus 1 46254 1 Oenococcus oeni 1247 201 0 species 2 genus 0 819 1 46255 6 Weissella species 0 191 1631871 1 Weissella jogaejeotgali Weissella koreensis 1 165096 206 species 0 1249 Weissella paramesenteroides 1 species 0 187 Weissella ceti 1 759620 116 species 0 0 species 117 137591 1 Weissella cibaria 1 1243 Leuconostoc 9 21 genus 0 1776 2685106 1 no rank 0 199 0 species 199 979982 Leuconostoc sp. C2 1 1245 1 Leuconostoc mesenteroides species 0 395 species 0 81 1246 Leuconostoc lactis 1 255248 1 Leuconostoc garlicum species 0 78 1244 1 Leuconostoc gelidum species 0 399 species 0 148 33964 1 Leuconostoc citreum 259 species 0 1 Leuconostoc carnosum 1252 species 0 196 136609 Leuconostoc kimchii 1 1 186828 Carnobacteriaceae 11 17 0 family 2655 3 0 genus 520 1 1470540 Jeotgalibaca 3 1 Jeotgalibaca dankookensis 708126 241 species 0 2621505 1 0 no rank 276 276 0 species 1 Jeotgalibaca sp. PTS2502 1903686 2747 1 5 Carnobacterium 0 genus 16 1641 648 0 species 1 Carnobacterium maltaromaticum 2751 147709 Carnobacterium inhibens 1 species 0 365 no rank 0 612 257487 2 208596 Carnobacterium sp. 17-4 1 0 species 400 0 species 212 1564681 Carnobacterium sp. CP1 1 191769 1 Marinilactibacillus 2 0 genus 1 477 no rank 0 476 2632303 1 1 Marinilactibacillus sp. 15R 1911586 476 species 0 307 0 no rank 1 263855 Lactobacillales bacterium 1 1993866 307 species 0 12519 family 0 16 Streptococcaceae 49 1300 1 10005 133 genus 0 43 Streptococcus 1 1301 1 Streptococcus pseudopneumoniae 257758 127 0 species 478 0 species Streptococcus pyogenes 1 1314 1 Streptococcus merionis 400065 132 species 0 128 species 0 Streptococcus equinus 1 1335 146 species 0 Streptococcus pluranimalium 1 82348 340 species 0 1 Streptococcus mitis 28037 382 species 0 1 Streptococcus gordonii 1302 1 Streptococcus pasteurianus 197614 181 0 species 0 no rank 830 2608887 7 112 0 species 1 Streptococcus sp. FDAARGOS_192 1839799 1 Streptococcus sp. A12 1759399 97 species 0 119 0 species 1 Streptococcus sp. oral taxon 431 712633 1156433 1 Streptococcus sp. I-P16 0 species 85 261 species 0 Streptococcus sp. 'group B' 1 1319 1156431 Streptococcus sp. I-G2 1 0 species 79 77 species 0 Streptococcus sp. NPS 308 1 1902136 species group 0 954 671232 3 species 0 454 1328 Streptococcus anginosus 1 333 0 species 1 Streptococcus intermedius 1338 167 0 species Streptococcus constellatus 1 76860 0 species 585 1307 Streptococcus suis 1 Streptococcus thermophilus 1 1308 293 0 species Streptococcus oralis 1 1303 285 species 0 115 species 0 Streptococcus cristatus 1 45634 1311 Streptococcus agalactiae 1 species 0 531 Streptococcus acidominimus 1 1326 136 species 0 0 species 155 1318 Streptococcus parasanguinis 1 1811193 1 Streptococcus pantholopis species 0 129 177 0 species 1 Streptococcus macedonicus 59310 487 0 species group 2 119603 316 species 0 1 Streptococcus equi 1336 1 Streptococcus dysgalactiae 1334 171 species 0 258 species 0 Streptococcus uberis 1 1349 1814128 1 Streptococcus halotolerans 0 species 145 315405 1 Streptococcus gallolyticus species 0 383 233 species 0 1 Streptococcus iniae 1346 species 0 369 1313 Streptococcus pneumoniae 1 409 species 0 Streptococcus salivarius 1 1304 0 species 138 1825069 Streptococcus marmotae 1 0 species 287 1309 Streptococcus mutans 1 Streptococcus sanguinis 1 1305 142 0 species 209 0 species 1 Streptococcus lutetiensis 150055 1 Streptococcus infantarius 102684 316 species 0 Streptococcus parauberis 1 1348 278 species 0 Streptococcus himalayensis 1 1888195 114 0 species 5 Lactococcus 1 1357 2498 6 0 genus 157 0 species 1 Lactococcus raffinolactis 1366 1363 Lactococcus garvieae 1 0 species 369 species 0 1681 1358 1 Lactococcus lactis 285 0 species Lactococcus piscium 1 1364 186827 7 0 family 1041 Aerococcus 7 1375 1 1041 0 genus 10 119206 1 Aerococcus sanguinicola 0 species 105 87541 Aerococcus christensenii 1 0 species 190 1376 1 Aerococcus urinae species 0 211 Aerococcus viridans 1 1377 163 species 0 228 0 species Aerococcus urinaeequi 1 51665 1 Aerococcus urinaehominis 128944 134 species 0 Enterococcaceae 19 1 81852 4951 13 family 0 3 Vagococcus 2737 1 706 0 genus 4 Vagococcus penaei 1 633807 346 0 species 356 species 0 1 Vagococcus teuberi 519472 430 1 0 genus Tetragenococcus 2 1 51668 species 0 429 51669 1 Tetragenococcus halophilus 3300 27 genus 0 Enterococcus 12 1 1350 254 0 species 1 Enterococcus durans 53345 Enterococcus casseliflavus 1 37734 153 0 species species 0 595 1352 1 Enterococcus faecium 0 species 270 53346 1 Enterococcus mundtii Enterococcus wangshanyuanii 1 2005703 275 species 0 1351 1 Enterococcus faecalis species 0 540 0 species 326 417368 Enterococcus thailandicus 1 1 Enterococcus hirae 1354 325 0 species 535 0 no rank 3 2608891 species 0 176 2057791 Enterococcus sp. CR-Ec1 1 2060307 1 Enterococcus sp. FDAARGOS_375 0 species 183 1 Enterococcus sp. FDAARGOS_163 2060306 176 0 species 1 33969 502 genus 0 0 species 502 33970 Melissococcus plutonius 1 Lactobacillaceae 58 1 33958 13740 26 family 0 2759736 3 0 genus 678 47715 1 Lactobacillus rhamnosus 0 species 199 1582 Lactobacillus casei 1 0 species 260 1597 1 Lactobacillus paracasei 0 species 219 231 genus 0 1 2767890 Lactobacillus hokkaidonensis 1 1193095 231 species 0 120 0 genus 1 2767876 species 0 120 1603 Lactobacillus amylophilus 1 2767877 1 0 genus 139 Lactobacillus kunkeei 1 148814 139 0 species 0 genus 472 2767885 2 0 species 206 28038 1 Lactobacillus curvatus species 0 266 1599 1 Lactobacillus sakei 2767889 2 0 genus 445 species 0 274 375175 1 Lactobacillus backii Lactobacillus coryniformis 1 1610 171 species 0 628 0 genus 2 2767881 0 species 282 1625 Lactobacillus sanfranciscensis 1 Lactobacillus lindneri 1 53444 346 species 0 2767842 3 genus 0 904 1 Lactobacillus paraplantarum 60520 104 species 0 0 species 659 1590 Lactobacillus plantarum 1 1 Lactobacillus pentosus 1589 141 0 species 273 genus 0 3 2767886 1580 1 Lactobacillus brevis 0 species 177 0 species 31 267363 Lactobacillus zymae 1 species 0 65 637971 1 Lactobacillus koreensis 0 genus 147 2767892 1 147 species 0 Lactobacillus paracollinoides 1 240427 4 2767887 1303 genus 0 1623 Lactobacillus ruminis 1 species 0 100 1601 Lactobacillus agilis 1 species 0 127 181 species 0 Lactobacillus acidipiscis 1 89059 1 Lactobacillus salivarius 1624 895 0 species 689 0 genus 3 2742598 species 0 104 1613 1 Lactobacillus fermentum 491 species 0 Lactobacillus reuteri 1 1598 97478 Lactobacillus mucosae 1 0 species 94 6 2767879 1658 genus 0 species 0 296 392416 1 Lactobacillus crustorum 1 Lactobacillus farciminis 1612 253 0 species 315 0 species 1 Lactobacillus allii 1847728 246 0 species 1 Lactobacillus heilongjiangensis 1074467 255 species 0 1 Lactobacillus alimentarius 1602 0 species 293 1007676 1 Lactobacillus ginsenosidimutans Lactobacillus 16 1578 1 4475 genus 0 108 224 species 0 1 Lactobacillus kefiranofaciens 267818 1579 Lactobacillus acidophilus 1 0 species 260 0 species 198 52242 Lactobacillus gallinarum 1 309 species 0 Lactobacillus delbrueckii 1 1584 2620435 4 0 no rank 748 263 0 species 1 Lactobacillus sp. wkB8 1545702 2099789 1 Lactobacillus sp. CBA3606 species 0 144 105 species 0 Lactobacillus sp. D1501 1 2108362 236 0 species 1 Lactobacillus sp. CBA3605 2099788 species 0 560 1596 1 Lactobacillus gasseri 1587 1 Lactobacillus helveticus 0 species 503 Lactobacillus amylolyticus 1 83683 147 0 species 292 0 species 1 Lactobacillus jensenii 109790 0 species 585 33959 Lactobacillus johnsonii 1 species 0 198 1600 1 Lactobacillus acetotolerans 0 species 343 1604 1 Lactobacillus amylovorus genus 0 4 1127 1253 1 6 Pediococcus 228 0 species 1 Pediococcus inopinatus 114090 187452 1 Pediococcus claussenii 0 species 243 212 species 0 Pediococcus damnosus 1 51663 1255 1 Pediococcus pentosaceus species 0 302 138 0 species group 1 1670797 Pediococcus acidilactici 1 1254 138 species 0 425 0 genus 3 2767893 1581 Lactobacillus buchneri 1 0 species 133 0 species 168 1138822 Lactobacillus curieae 1 0 species 124 152331 Lactobacillus parabuchneri 1 186801 1 200 Clostridia class 0 92 80311 3 485256 434 0 order 434 0 family 4 Natranaerobiaceae 3 485255 1 375928 1 Natranaerobius 2 0 genus 4 430 0 species 426 375929 Natranaerobius thermophilus 1 9750 order 0 15 Thermoanaerobacterales 33 68295 1 522 0 family 2 227387 0 genus 1 522 227388 1 Thermodesulfobium 2 species 0 521 184064 Thermodesulfobium narugense 1 Thermoanaerobacterales Family III. Incertae Sedis 13 1 543371 4379 7 0 family 3192 62 genus 0 Caldicellulosiruptor 9 1 44000 458 species 0 1 Caldicellulosiruptor saccharolyticus 44001 Caldicellulosiruptor bescii 1 31899 409 species 0 0 species 434 413889 Caldicellulosiruptor kronotskyensis 1 Caldicellulosiruptor kristjanssonii 1 52765 367 0 species 350 species 0 Caldicellulosiruptor hydrothermalis 1 413888 species 0 365 717609 Caldicellulosiruptor obsidiansis 1 Caldicellulosiruptor lactoaceticus 1 52766 332 0 species 0 species 415 55205 1 Caldicellulosiruptor owensensis 0 genus 3 1180 28895 1 Thermoanaerobacterium 3 1 Thermoanaerobacterium thermosaccharolyticum 1517 765 species 0 1 Thermoanaerobacterium xylanolyticum 29329 412 0 species 543372 2 0 family 91 1 252965 Mahella 2 2 genus 0 91 1 Mahella australiensis 252966 89 0 species 15 Thermoanaerobacteraceae 186814 1 4743 family 0 12 1 249529 359 genus 0 0 species 359 911092 Caldanaerobacter subterraneus 1 0 genus 199 129957 1 199 species 0 Carboxydothermus hydrogenoformans 1 129958 genus 0 98 140458 1 Thermacetogenium phaeum 1 85874 98 0 species 42857 2 no rank 0 158 1 44260 110 genus 0 1 Moorella thermoacetica 1525 110 0 species 48 genus 0 1 42837 species 0 48 42838 Ammonifex degensii 1 3917 genus 0 182 Thermoanaerobacter 9 1754 1 no rank 0 984 2636821 2 0 species 488 399726 1 Thermoanaerobacter sp. X514 496 0 species 1 Thermoanaerobacter sp. X513 573062 species 0 444 2325 1 Thermoanaerobacter kivui 449 species 0 Thermoanaerobacter italicus 1 108150 29323 1 Thermoanaerobacter brockii 0 species 494 494 species 0 Thermoanaerobacter pseudethanolicus 1 496866 46354 1 Thermoanaerobacter wiegelii species 0 456 species 0 414 583357 1 Thermoanaerobacter mathranii 0 order 178 66243 186802 1 149 Clostridiales 5433 0 family 12 Lachnospiraceae 23 186803 1 5 genus 0 1086 1 698776 Cellulosilyticum 2 1081 species 0 1 Cellulosilyticum lentocellum 29360 1 2719231 158 genus 0 species 0 158 84030 [Clostridium] saccharolyticum 1 853 5 genus 0 Lachnoclostridium 4 1 1506553 1871021 Lachnoclostridium phocaeense 1 0 species 96 Lachnoclostridium phytofermentans 1 66219 589 species 0 163 no rank 0 1 2608895 163 species 0 1 Lachnoclostridium sp. YL32 1834196 1 207244 303 genus 0 649756 1 Anaerostipes hadrus 0 species 303 359 0 genus 1 28050 0 species 359 39485 1 [Eubacterium] eligens 572511 1 Blautia 3 0 genus 1 419 Blautia hansenii 1 1322 263 species 0 155 no rank 0 1 2648079 155 0 species Blautia sp. YL58 1 1796616 2 186928 276 0 no rank Lachnospiraceae bacterium oral taxon 500 1 712991 130 species 0 species 0 146 39491 1 [Eubacterium] rectale Herbinix 2 1 1663717 282 1 genus 0 1679721 1 Herbinix luporum 0 species 281 552 genus 0 1 2569097 552 species 0 [Eubacterium] hallii 1 39488 2719313 1 genus 0 132 1 [Clostridium] bolteae 208479 132 0 species 97 0 genus 1 841 97 0 species Roseburia hominis 1 301301 830 2 genus 0 666 185008 1 Butyrivibrio hungatei species 0 326 43305 Butyrivibrio proteoclasticus 1 species 0 340 1 2039240 238 genus 0 species 0 238 28446 1 Anaerotignum propionicum 216572 1 Oscillospiraceae 3 family 0 1 112 Oscillibacter 2 1 459786 111 1 genus 0 1 Oscillibacter valericigenes 351091 110 species 0 3 Symbiobacteriaceae 1 543349 115 1 0 family Symbiobacterium 2 1 2733 114 1 genus 0 2734 Symbiobacterium thermophilum 1 species 0 113 186804 1 Peptostreptococcaceae 10 family 0 10 4786 645 2 genus 0 Acetoanaerobium 2 1 186831 643 0 species Acetoanaerobium sticklandii 1 1511 349 no rank 0 1 1411023 349 0 species 1 Peptostreptococcaceae bacterium oral taxon 929 2081703 0 genus 1134 1849828 1 1134 0 species Paeniclostridium sordellii 1 1505 44259 1 Filifactor 2 genus 0 3 248 Filifactor alocis 1 143361 245 0 species 1870884 1 genus 0 2238 0 species 2238 1496 1 Clostridioides difficile Peptoclostridium 2 1 1481960 162 1 0 genus 0 species 161 1731 1 Peptoclostridium acidaminophilum Clostridiaceae 41 31979 1 46636 0 family 65 1 genus 0 1 Mordavella 1981033 30 Clostridium 1 1485 43310 239 genus 0 Clostridium carboxidivorans 1 217159 1310 species 0 1 Clostridium baratii 1561 1822 0 species 84023 1 Clostridium autoethanogenum 0 species 886 Clostridium estertheticum 1 238834 1024 0 species 2 2614128 466 0 no rank 1 Clostridium sp. SY8519 1042156 78 species 0 0 species 388 755731 Clostridium sp. BNL1100 1 1215 0 species 1 Clostridium bornimense 1216932 1513 Clostridium tetani 1 0 species 1254 84022 1 Clostridium aceticum species 0 643 29341 1 Clostridium argentinense 0 species 1142 1 Clostridium acetobutylicum 1488 1020 0 species 169679 Clostridium saccharobutylicum 1 species 0 1828 0 species 1739 1492 1 Clostridium butyricum 1 Clostridium sporogenes 1509 1032 0 species 1519 1 Clostridium tyrobutyricum species 0 765 1 Clostridium saccharoperbutylacetonicum 36745 1803 species 0 species 0 9317 1491 1 Clostridium botulinum 1497 Clostridium formicaceticum 1 species 0 669 1501 1 Clostridium pasteurianum 0 species 2206 2112 species 0 1 Clostridium perfringens 1502 species 0 1124 394958 1 Clostridium taeniosporum 936 0 species 1 Clostridium ljungdahlii 1538 2343 0 species 1 Clostridium beijerinckii 1520 1534 1 Clostridium kluyveri species 0 1241 1548 1 Clostridium scatologenes 0 species 1371 1493 1 Clostridium cellulovorans species 0 964 986 species 0 1 Clostridium chauvoei 46867 1 Clostridium novyi 1542 938 species 0 1 Clostridium cochlearium 1494 915 species 0 517 1 0 genus 2 Geosporobacter 1 390805 Geosporobacter ferrireducens 1 1424294 516 species 0 114627 1 Alkaliphilus 3 genus 0 2 1038 208226 1 Alkaliphilus metalliredigens 0 species 645 391 0 species Alkaliphilus oremlandii 1 461876 0 genus 10 1705 49082 1 Candidatus Arthromitus 4 2638829 3 no rank 0 1695 species 0 584 1041504 1 Candidatus Arthromitus sp. SFB-rat-Yit Candidatus Arthromitus sp. SFB-mouse 1 49118 548 0 species 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 1 species 0 563 2304686 10 family 0 2360 2304692 3 0 genus 1158 Herbivorax saccincola 1 1677857 426 0 species 1515 Ruminiclostridium thermocellum 1 0 species 267 [Clostridium] clariflavum 1 288965 465 0 species genus 0 13 314 1508657 1 Ruminiclostridium 2 1521 1 [Clostridium] cellulolyticum 0 species 301 1 2304693 244 genus 0 [Clostridium] thermosuccinogenes 1 84032 244 species 0 1 1637257 85 genus 0 Mageeibacillus indolicus 1 884684 85 species 0 340 genus 0 1 236752 340 0 species Fastidiosipila sanguinis 1 236753 159 genus 0 1 2304691 [Clostridium] stercorarium 1 1510 159 0 species 1 2305130 60 no rank 0 1 Ruminiclostridium sp. KB18 1834198 60 species 0 family 0 2 811 186806 1 Eubacteriaceae 5 1730 1 Eubacterium 2 0 genus 12 449 species 0 437 1736 1 Eubacterium limosum 360 1 0 genus 2 Acetobacterium 1 33951 Acetobacterium woodii 1 33952 359 species 0 Ruminococcaceae 11 1 541000 791 10 family 0 Flavonifractor 2 1 946234 97 2 0 genus 1 Flavonifractor plautii 292800 95 species 0 1 552397 113 0 no rank 29343 [Clostridium] cellulosi 1 species 0 113 90 0 genus 1 253238 253239 1 Ethanoligenens harbinense 0 species 90 1 1263 Ruminococcus 3 1 0 genus 304 Ruminococcus albus 1 1264 132 0 species Ruminococcus bicirculans 1 1160721 171 species 0 0 genus 2 109 216851 1 2 Faecalibacterium species 0 107 853 Faecalibacterium prausnitzii 1 68 0 no rank 1 2305133 species 0 68 1572656 1 Ruminococcaceae bacterium CPB6 990719 1 family 0 59 0 genus 59 990721 1 1 Christensenella massiliensis 1805714 59 species 0 26 Peptococcaceae 186807 1 3922 0 family 20 9 genus 0 753 1 1562 Desulfotomaculum 5 162 species 0 1 Desulfotomaculum ferrireducens 1833852 0 species 278 59610 1 Desulfotomaculum reducens 1564 1 Desulfotomaculum ruminis species 0 147 1565 1 Desulfotomaculum nigrificans 0 species 157 236 0 genus 1 51514 236 species 0 1 Dehalobacterium formicoaceticum 51515 0 genus 264 2282742 1 58138 Desulfotomaculum acetoxidans 1 0 species 264 0 genus 129 51196 1 Syntrophobotulus glycolicus 1 51197 129 0 species genus 0 4 831 36853 1 Desulfitobacterium 5 221 species 0 1 Desulfitobacterium dehalogenans 36854 1 Desulfitobacterium hafniense 49338 189 0 species 192 species 0 Desulfitobacterium dichloroeliminans 1 233055 225 0 species Desulfitobacterium metallireducens 1 142877 Desulfosporosinus 4 79206 1 831 genus 0 3 269 species 0 Desulfosporosinus acidiphilus 1 885581 species 0 289 1563 1 Desulfosporosinus orientis species 0 270 79209 Desulfosporosinus meridiei 1 138 0 genus 1 278993 863643 Thermincola potens 1 species 0 138 248 0 genus 1 2282740 248 species 0 Desulfotomaculum gibsoniae 1 102134 56112 1 4 Dehalobacter genus 0 7 397 55583 1 Dehalobacter restrictus species 0 129 261 0 no rank 2 2635733 Dehalobacter sp. DCA 1 1147129 128 0 species 133 0 species 1 Dehalobacter sp. CF 1131462 471826 1 Candidatus Desulforudis 2 genus 0 5 75 Candidatus Desulforudis audaxviator 1 471827 70 0 species 1 31984 3 Heliobacteriaceae 4 family 0 124 2697 1 Heliobacterium 2 0 genus 1 120 35701 Heliobacterium modesticaldum 1 species 0 119 538999 8 0 no rank 685 123 0 family 3 Clostridiales Family XVII. Incertae Sedis 2 539000 1 genus 0 120 73918 1 1 Thermaerobacter marianensis 73919 120 species 0 2717089 1 0 genus 114 1 Mordavella sp. Marseille-P3756 2086584 114 species 0 1 543314 3 Clostridiales Family XIII. Incertae Sedis 2 0 family 352 1 86331 166 genus 0 114527 1 Mogibacterium diversum 0 species 166 1 [Eubacterium] sulci 143393 184 0 species 0 genus 1 96 1392389 1 Intestinimonas 2 95 species 0 Intestinimonas butyriciproducens 1 1297617 3 family 0 231 1 68298 Syntrophomonadaceae 4 1 862 2 Syntrophomonas 4 0 genus 147 1 Syntrophomonas wolfei 863 143 species 0 81 0 genus 1 129001 1 Syntrophothermus lipocalidus 86170 81 0 species order 0 6 3366 53433 1 Halanaerobiales 11 2 0 family 1148 1 53434 Halobacteroidaceae 4 Halobacteroides 2 1 42417 741 1 genus 0 1 Halobacteroides halobius 42422 740 species 0 1 28186 405 genus 0 28187 1 Acetohalobium arabaticum species 0 405 972 1 6 Halanaerobiaceae family 0 10 2212 10 genus 0 344 1 32636 Halothermothrix 2 1 Halothermothrix orenii 31909 334 species 0 2330 1 Halanaerobium 3 genus 0 6 1858 Halanaerobium praevalens 1 2331 1034 species 0 656519 Halanaerobium hydrogeniformans 1 species 0 818 3 2770089 426 0 order 2770093 1 0 family 89 291988 1 0 genus 89 species 0 89 291990 1 Thermosediminibacter oceani 2 2770092 337 family 0 337 0 genus 2 Tepidanaerobacter 2 499228 1 335 species 0 Tepidanaerobacter acetatoxydans 1 499229 1 1737404 17 Tissierellia 6 0 class 3367 no rank 0 328 1737407 2 genus 0 5 328 1582879 1 Ezakiella 2 1852374 Ezakiella massiliensis 1 species 0 323 order 0 8 3033 1737405 1 Tissierellales 14 Gottschalkiaceae 3 2042895 1 792 family 0 2 1505664 1 Gottschalkia 2 genus 0 5 790 1 Gottschalkia acidurici 1556 785 species 0 Peptoniphilaceae 10 1 1570339 2233 13 0 family 297 0 genus 1 162289 0 no rank 297 2637196 1 species 0 297 1912856 1 Peptoniphilus sp. ING2-D1G 1 165779 Anaerococcus 3 2 genus 0 633 species 0 307 33034 Anaerococcus prevotii 1 species 0 324 1870984 Anaerococcus mediterraneensis 1 genus 0 2 504 150022 1 Finegoldia 2 502 0 species Finegoldia magna 1 1260 1 1161127 100 0 genus 0 species 100 1852373 1 Murdochiella vaginalis 686 genus 0 2 Parvimonas 2 543311 1 33033 Parvimonas micra 1 0 species 684 995 class 0 2 Erysipelotrichia 10 526524 1 993 order 0 4 Erysipelotrichales 9 526525 1 989 7 family 0 Erysipelotrichaceae 8 1 128827 64 genus 0 1 1729679 64 species 0 Faecalibaculum rodentium 1 1702221 191303 1 Turicibacter 2 genus 0 1 310 309 0 no rank 1 2638206 309 0 species Turicibacter sp. H121 1 1712675 no rank 0 159 544447 1 1834207 Erysipelotrichaceae bacterium I46 1 species 0 159 genus 0 6 449 1647 1 Erysipelothrix 3 1648 1 Erysipelothrix rhusiopathiae species 0 221 species 0 222 1514105 1 Erysipelothrix larvae 1 84086 589 no rank 0 species 0 589 243899 1 endosymbiont 'TC1' of Trimyema compressum class 0 111 1676648 3 4 order 0 111 1 1676649 Limnochordales 3 2 1676650 107 family 0 8 genus 0 107 1 1676651 2 Limnochorda Limnochorda pilosa 1 1555112 99 0 species 3195 class 0 5 Negativicutes 26 909932 1 2042 14 order 0 Selenomonadales 12 1 909929 8 1843491 806 family 0 425 11 0 genus Selenomonas 6 1 970 971 Selenomonas ruminantium 1 species 0 99 216 0 no rank 3 2637378 713030 1 Selenomonas sp. oral taxon 136 0 species 85 species 0 68 712538 1 Selenomonas sp. oral taxon 478 63 0 species Selenomonas sp. oral taxon 920 1 1884263 99 0 species Selenomonas sputigena 1 69823 1 158846 Megamonas 2 3 genus 0 381 1 Megamonas hypermegale 158847 378 species 0 1 1843490 Sporomusaceae 3 2 0 family 1222 365348 2 genus 0 1220 365349 1 Pelosinus fermentans species 0 578 2629460 1 0 no rank 642 1 Pelosinus sp. UFO1 484770 642 species 0 0 order 8 1004 1843489 1 Veillonellales 9 996 family 0 15 Veillonellaceae 8 31977 1 485 genus 0 7 Veillonella 3 29465 1 111 species 0 Veillonella rodentium 1 248315 367 species 0 Veillonella parvula 1 29466 39948 1 0 genus 260 260 species 0 Dialister pneumosintes 1 39950 Megasphaera 2 906 1 152 genus 0 1 151 0 species 1 Megasphaera elsdenii 907 genus 0 84 909928 1 84 species 0 Negativicoccus massiliensis 1 1702287 0 order 1 144 1843488 1 4 Acidaminococcales 1 909930 Acidaminococcaceae 3 1 0 family 143 904 2 genus 0 142 187327 Acidaminococcus intestini 1 0 species 69 73 species 0 1 Acidaminococcus fermentans 905 2 33974 74 0 no rank Ndongobacter 2 1930845 1 74 genus 0 1 0 species 73 1871025 1 Ndongobacter massiliensis 157 1798711 2893386 0 clade 2893386 phylum 0 12 Cyanobacteria 157 1117 1 763 order 0 1 Chroococcidiopsidales 4 1890505 1 Chroococcidiopsidaceae 3 1 1890528 762 8 0 family 1 54298 2 Chroococcidiopsis 2 genus 0 754 Chroococcidiopsis thermalis 1 54299 752 0 species Pleurocapsales 8 52604 1 2517 order 0 1 336 0 family 4 3 Hyellaceae 1890500 1 332 1 genus 0 2 Pleurocapsa 1 44474 331 species 0 Pleurocapsa minor 1 54308 4 Dermocarpellaceae 1890498 1 2180 0 family 11 2169 0 genus 10 3 Stanieria 102115 1 species 0 1048 102116 Stanieria cyanosphaera 1 1 2642663 1111 0 no rank 1807358 Stanieria sp. NIES-3757 1 0 species 1111 46 1301283 15253 subclass 0 1 1118 Chroococcales 25 21 order 0 10857 1 1890452 3 Cyanobacteriaceae 3 0 family 852 102234 1 Cyanobacterium 2 0 genus 2 849 1 Cyanobacterium aponinum 379064 847 species 0 1890449 1 4 Microcystaceae 0 family 7 1659 1652 0 genus 15 3 Microcystis 1125 1 0 species 1123 1126 1 Microcystis aeruginosa no rank 0 514 2643300 1 1967666 Microcystis sp. MC19 1 0 species 514 7 Chroococcaceae 1890464 1 4470 family 0 21 0 genus 463 102231 1 463 0 no rank 1 2623012 species 0 463 1173026 Gloeocapsa sp. PCC 7428 1 0 genus 8 2053 669357 1 Geminocystis 3 no rank 0 2045 2625037 2 885 0 species 1 Geminocystis sp. NIES-3709 1617448 species 0 1160 1615909 Geminocystis sp. NIES-3708 1 0 genus 1 1933 268175 1 Chondrocystis 2 0 no rank 1932 2648896 1 1932 0 species Chondrocystis sp. NIES-4102 1 2005460 3855 0 family 13 Aphanothecaceae 10 1890450 1 1 263510 515 genus 0 515 species 0 1 2546360 515 0 strain 1 Cyanothece sp. ATCC 51142 43989 Candidatus Atelocyanobacterium 2 1453359 1 794 genus 0 3 Candidatus Atelocyanobacterium thalassa 1 713887 791 species 0 genus 0 1359 28070 2 species 0 642 2546356 1 0 strain 642 65393 Cyanothece sp. PCC 7424 1 0 species 717 2546359 1 497965 1 Cyanothece sp. PCC 7822 strain 0 717 0 no rank 392 92682 2 76023 1 Halothece 2 genus 0 4 392 1 2632878 388 0 no rank 388 0 species 1 Halothece sp. PCC 7418 65093 2546365 2 0 genus 782 2 2546366 782 species 0 strain 0 396 395962 Cyanothece sp. PCC 8802 1 386 strain 0 1 Cyanothece sp. PCC 8801 41431 1 1150 Oscillatoriales 21 38 order 0 4396 Microcoleaceae 5 1892252 1 1476 0 family 15 2 Trichodesmium 1205 1 1179 0 genus 1 species 0 1178 1206 Trichodesmium erythraeum 1 1 44471 2 Microcoleus 8 genus 0 282 1 2642155 274 no rank 0 274 0 species 1 Microcoleus sp. PCC 7113 1173027 26 0 family 221 1 1892249 Cyanothecaceae 3 Cyanothece 2 1 43988 195 24 0 genus no rank 0 171 2649277 1 395961 1 Cyanothece sp. PCC 7425 species 0 171 1 1892254 Oscillatoriaceae 6 24 family 0 1998 3 Oscillatoria 1158 1 1064 genus 0 11 0 species 513 482564 1 Oscillatoria nigro-viridis species 0 540 118323 1 Oscillatoria acuminata Moorea 2 1 1155738 910 9 0 genus Moorea producens 1 1155739 901 0 species 1 1892255 Gomontiellaceae 3 5 0 family 550 Crinalium 2 1 241421 545 2 genus 0 1 Crinalium epipsammum 241425 543 species 0 1 1892251 3 Coleofasciculaceae 2 family 0 113 63132 1 2 Geitlerinema genus 0 2 111 0 no rank 109 2648775 1 1173025 1 Geitlerinema sp. PCC 7407 species 0 109 1983111 1 no rank 0 441 0 species 441 718217 cyanobacterium endosymbiont of Epithemia turgida 1 1890424 1 Synechococcales 58 0 order 91 2857631 Prochloraceae 5 1 1213 2835635 13 family 0 Prochlorococcus 4 1218 1 2835622 genus 0 136 0 species 2174366 1219 1 Prochlorococcus marinus 0 no rank 661120 2627481 2 1 Prochlorococcus sp. MIT 0604 1501268 657138 species 0 0 species 3982 1501269 1 Prochlorococcus sp. MIT 0801 1 1890426 Synechococcaceae 33 29 0 family 18517 456 genus 0 4 2 Dactylococcopsis 13034 1 292566 Dactylococcopsis salina 1 0 species 452 1 146785 120 0 genus Thermosynechococcus elongatus 1 146786 120 species 0 167375 1 Cyanobium 3 genus 0 21 1008 no rank 0 445 2627006 1 445 0 species 1 Cyanobium sp. NIES-981 1851505 1 Cyanobium gracile 59930 542 0 species 26 Synechococcus 1 1129 16904 315 genus 0 143 0 species 1 Synechococcus elongatus 32046 no rank 0 16330 2626047 23 0 species 293 1916956 Synechococcus sp. SynAce01 1 1 Synechococcus sp. WH 7803 32051 261 species 0 species 0 161 374982 Synechococcus sp. PCC 73109 1 Synechococcus sp. KORDI-52 1 585425 1742 species 0 1173263 Synechococcus sp. PCC 7502 1 0 species 462 133 species 0 1 Synechococcus sp. NIES-970 1827144 0 species 137 195498 1 Synechococcus sp. PCC 7117 110662 Synechococcus sp. CC9605 1 0 species 5953 Synechococcus sp. UTEX 2973 1 1350461 131 0 species 64471 Synechococcus sp. CC9311 1 species 0 309 32049 1 Synechococcus sp. PCC 7002 0 species 116 316279 Synechococcus sp. CC9902 1 0 species 264 585423 1 Synechococcus sp. KORDI-49 0 species 291 species 0 754 84588 Synechococcus sp. WH 8102 1 species 0 126 195248 Synechococcus sp. PCC 8807 1 species 0 703 29410 1 Synechococcus sp. WH 8103 195253 Synechococcus sp. PCC 6312 1 0 species 185 374981 1 Synechococcus sp. PCC 7003 0 species 138 species 0 389 1280380 1 Synechococcus sp. KORDI-100 1 Synechococcus sp. JA-2-3B'a(2-13) 321332 128 0 species 316278 1 Synechococcus sp. RCC307 0 species 308 321327 Synechococcus sp. JA-3-3Ab 1 species 0 90 0 species 3256 166314 Synechococcus sp. WH 8109 1 Synechococcus lividus 1 33070 116 0 species Merismopediaceae 5 1890428 1 784 0 family 1 783 18 0 genus Synechocystis 4 1 1142 2640012 3 no rank 0 765 325 0 species 1 Synechocystis sp. PCC 6714 1147 220 0 species 1 Synechocystis sp. PCC 6803 1148 species 0 220 2116702 Synechocystis sp. IPPAS B-1465 1 1140 5 0 family Leptolyngbyaceae 6 1 1890438 1135 11 0 genus Leptolyngbya 5 1 47251 0 species 254 1184 1 Leptolyngbya boryana 0 no rank 870 2650499 3 177 species 0 1 Leptolyngbya sp. O-77 1080068 459 0 species 1 Leptolyngbya sp. PCC 7376 111781 234 0 species Leptolyngbya sp. NIES-3755 1 1752064 0 family 350 2303730 2 350 4 genus 0 Halomicronema 2 1 170610 346 0 species 1 Halomicronema hongdechloris 1209493 3 family 0 574 1 1890436 3 Pseudanabaenaceae Pseudanabaena 2 1152 1 571 genus 0 5 1 2593292 566 no rank 0 1 Pseudanabaena sp. PCC 7367 82654 566 0 species 540 1 0 family Acaryochloridaceae 3 1 1890429 Acaryochloris 2 155977 1 539 genus 0 1 538 0 species 1 Acaryochloris marina 155978 307596 5 0 class 354 1 307595 Gloeobacterales 5 2 0 order 354 family 0 9 352 1890422 1 Gloeobacteraceae 4 343 2 genus 0 3 Gloeobacter 1 33071 182 0 species 1 Gloeobacter kilaueensis 1416614 Gloeobacter violaceus 1 33072 159 species 0 46 0 order 16415 1 1161 34 Nostocales 3 Rivulariaceae 1 1185 1338 12 family 0 1 373984 2 Rivularia 1 0 genus 1326 0 no rank 1325 2676603 1 species 0 1325 373994 Rivularia sp. PCC 7116 1 1 1162 18 Nostocaceae 26 0 family 8620 4 Anabaena 1 1163 2018 22 genus 0 660 0 species 1 Anabaena cylindrica 1165 no rank 0 1336 2619674 2 1647413 1 Anabaena sp. WA102 0 species 667 669 species 0 1 Anabaena sp. 90 46234 5437 44 genus 0 10 Nostoc 1 1177 1 Nostoc punctiforme 272131 579 species 0 no rank 0 4133 2593658 7 103690 Nostoc sp. PCC 7120 1 species 0 541 Nostoc sp. NIES-3756 1 1751286 637 0 species species 0 625 1869241 1 Nostoc sp. CENA543 634 species 0 Nostoc sp. PCC 7107 1 317936 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 1618022 443 species 0 1 Nostoc sp. PCC 7524 28072 667 0 species 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 species 586 Nostoc flagelliforme 1 1306274 681 0 species genus 0 7 1139 264688 1 3 Trichormus 264691 Trichormus variabilis 1 0 species 561 1164 Trichormus azollae 1 species 0 571 1123 family 0 4 Hapalosiphonaceae 3 1892263 1 1119 1 0 genus 2 Fischerella 1 1190 494603 1 no rank 0 1118 1118 0 species Fischerella sp. NIES-3754 1 1752063 8 2661849 4775 0 family 4775 0 genus 30 Calothrix 8 1186 1 670 species 0 Calothrix parietina 1 32054 2619626 6 0 no rank 4075 1954171 Calothrix sp. NIES-2098 1 0 species 642 926 species 0 1 Calothrix sp. NIES-4071 2005469 99598 Calothrix sp. PCC 7507 1 species 0 560 0 species 760 2005461 1 Calothrix sp. NIES-4101 1 Calothrix sp. 336/3 1337936 527 0 species Calothrix sp. NIES-3974 1 2005462 660 0 species 513 no rank 0 1 1219117 1 Nostocales cyanobacterium HT-58-2 1940762 513 species 0 615 Actinobacteria 1 201174 99505 3 phylum 0 2 0 class 563 1 84992 Acidimicrobiia 7 0 order 8 561 84993 1 Acidimicrobiales 6 2 2448023 420 family 0 1 0 genus 420 1 682522 Ilumatobacter 2 species 0 419 467094 1 Ilumatobacter coccineus 133 0 family 2 Acidimicrobiaceae 3 84994 1 1 53634 Acidimicrobium 2 8 0 genus 131 53635 Acidimicrobium ferrooxidans 1 0 species 123 234 class 0 1 Rubrobacteria 6 84995 1 Rubrobacterales 5 1 84996 233 8 0 order Rubrobacteraceae 4 1 84997 225 2 0 family genus 0 1 223 42255 1 3 Rubrobacter species 0 92 42256 Rubrobacter radiotolerans 1 130 0 species Rubrobacter xylanophilus 1 49319 Coriobacteriia 29 1 84998 1756 15 class 0 Eggerthellales 14 1 1643822 1083 12 0 order family 0 16 1071 1643826 1 Eggerthellaceae 13 genus 0 4 212 84111 1 3 Eggerthella 2648737 1 0 no rank 67 67 species 0 Eggerthella sp. YY7918 1 502558 141 0 species Eggerthella lenta 1 84112 1 84162 93 genus 0 0 species 93 84163 1 Cryptobacterium curtum 1 0 genus 181 1 1981050 Phoenicibacter 2 180 0 species Phoenicibacter massiliensis 1 1944646 1 79603 62 0 genus 79604 1 Denitrobacterium detoxificans species 0 62 296 5 0 genus Gordonibacter 3 1 644652 1 Gordonibacter urolithinfaciens 1335613 128 species 0 1 Gordonibacter massiliensis 1841863 163 species 0 84108 1 genus 0 93 84110 Slackia heliotrinireducens 1 0 species 93 118 genus 0 1 447020 species 0 118 446660 1 Adlercreutzia equolifaciens 5 0 order 658 1 84999 14 Coriobacteriales family 0 1 205 84107 1 Coriobacteriaceae 6 no rank 0 78 84113 1 1531429 Coriobacteriaceae bacterium 68-1-3 1 0 species 78 0 genus 2 67 102106 1 Collinsella 2 74426 1 Collinsella aerofaciens species 0 65 33870 1 Coriobacterium 2 0 genus 2 59 species 0 57 33871 1 Coriobacterium glomerans Atopobiaceae 7 1 1643824 448 1 family 0 1 2767353 121 0 genus 1 Atopobium parvulum 1382 121 0 species 1380 Atopobium 1 0 genus 4 322 0 genus 4 4 Olsenella 133925 1 1805478 1 Olsenella sp. Marseille-P2300 0 species 115 76 0 species Olsenella uli 1 133926 2638792 1 no rank 0 127 Olsenella sp. oral taxon 807 1 712411 127 0 species 559 0 no rank 4 1752188 Actinobacteria bacterium IMCC26103 1 1848756 146 0 species 1 Actinobacteria bacterium IMCC26077 1848755 86 species 0 225 0 species 1 Actinobacteria bacterium IMCC19121 1848754 species 0 102 1848255 1 Actinobacteria bacterium IMCC25003 1234 0 class 1 Thermoleophilia 5 1497346 1 0 order 5 1233 588673 1 Solirubrobacterales 4 3 Conexibacteraceae 320583 1 1228 family 0 2 191494 1 2 Conexibacter 0 genus 2 1226 191495 1 Conexibacter woesei 0 species 1224 563 Actinobacteria 1 1760 95156 324 0 class 29 Propionibacteriales 1 85009 2989 9 0 order Propionibacteriaceae 17 1 31957 1534 8 0 family 4 genus 0 162 1 1912215 Acidipropionibacterium 2 species 0 158 1748 1 Acidipropionibacterium acidipropionici 76 genus 0 1 2801844 Pseudopropionibacterium propionicum 1 1750 76 0 species 203133 1 0 genus 70 no rank 0 70 2633994 1 1871034 1 Propionimicrobium sp. Marseille-P3275 species 0 70 2 1743 233 0 genus 183 0 species 1 Propionibacterium freudenreichii 1744 1 2608905 50 0 no rank 50 0 species Propionibacterium sp. oral taxon 193 1 671223 Cutibacterium 4 1 1912216 295 6 genus 0 101 0 species 1 Cutibacterium avidum 33010 33011 Cutibacterium granulosum 1 species 0 73 0 species 115 1747 Cutibacterium acnes 1 Tessaracoccus 5 72763 1 542 genus 0 3 147 no rank 0 1 2635419 Tessaracoccus sp. T2.5-30 1 1909732 147 species 0 Tessaracoccus flavescens 1 399497 118 0 species 1 Tessaracoccus flavus 1610493 109 species 0 1332264 1 Tessaracoccus aquimaris 0 species 165 0 genus 148 29404 1 148 0 species 1 Microlunatus phosphovorus 29405 1 85015 Nocardioidaceae 11 15 0 family 1446 116071 1 0 genus 111 Micropruina glycogenica 1 75385 111 0 species genus 0 7 238 182639 1 Kribbella 2 Kribbella flavida 1 182640 231 0 species 4 Nocardioides 1839 1 632 0 genus 12 142 0 species Nocardioides sp. 78 1 2045452 no rank 0 238 2615069 1 Nocardioides sp. JS614 1 196162 238 species 0 1 Nocardioides dokdonensis 450734 240 species 0 280 2 genus 0 Pimelobacter 2 1 2044 species 0 278 2045 1 Pimelobacter simplex 1 2040 170 genus 0 Aeromicrobium erythreum 1 2041 170 species 0 133 order 0 1 622450 1 622451 133 0 family 0 genus 133 1849 1 133 species 0 1 Actinopolyspora erythraea 414996 Nakamurellales 4 1 1643684 194 1 0 order 193 0 family 3 Nakamurellaceae 3 85031 1 Nakamurella 2 1 53460 190 3 0 genus 1 Nakamurella multipartita 53461 187 0 species 1643683 2 0 order 109 1 85032 2 Acidothermaceae 1 0 family 109 1 28048 108 genus 0 species 0 108 28049 1 Acidothermus cellulolyticus 1 85007 Corynebacteriales 158 127 order 0 21999 1 1653 Corynebacteriaceae 52 10 family 0 4625 genus 0 53 4615 1716 1 Corynebacterium 51 0 species 146 43770 Corynebacterium striatum 1 0 species 137 1717 Corynebacterium diphtheriae 1 123 0 species 1 Corynebacterium vitaeruminis 38305 1231000 1 Corynebacterium lactis 0 species 57 0 species 125 35757 1 Corynebacterium cystitidis 1 Corynebacterium aurimucosum 169292 60 species 0 96 species 0 Corynebacterium halotolerans 1 225326 66 species 0 1 Corynebacterium argentoratense 42817 0 species 78 1719 Corynebacterium pseudotuberculosis 1 161896 Corynebacterium camporealensis 1 species 0 45 258224 1 Corynebacterium resistens 0 species 50 156978 Corynebacterium imitans 1 0 species 64 146827 1 Corynebacterium simulans 0 species 62 89154 Corynebacterium terpenotabidum 1 species 0 90 0 species 97 575200 Corynebacterium maris 1 species 0 62 571915 Corynebacterium mustelae 1 0 species 128 191493 1 Corynebacterium sphenisci Corynebacterium glutamicum 1 1718 225 species 0 1 Corynebacterium crudilactis 1652495 114 species 0 92706 1 [Brevibacterium] flavum species 0 86 86 species 0 1 Corynebacterium stationis 1705 35755 Corynebacterium kutscheri 1 species 0 106 35 species 0 Corynebacterium atypicum 1 191610 Corynebacterium callunae 1 1721 96 0 species 0 species 38 161879 1 Corynebacterium kroppenstedtii 65 0 species 1 Corynebacterium falsenii 108486 1 Corynebacterium efficiens 152794 92 species 0 Corynebacterium ulcerans 1 65058 78 0 species 0 species 98 349751 Corynebacterium marinum 1 73 0 species 1 Corynebacterium casei 160386 1 Corynebacterium glaucum 187491 66 0 species species 0 60 43771 Corynebacterium urealyticum 1 64 species 0 Corynebacterium ammoniagenes 1 1697 64 species 0 1 Corynebacterium phocae 161895 0 species 93 38289 Corynebacterium jeikeium 1 1223514 Corynebacterium humireducens 1 0 species 110 Corynebacterium flavescens 1 28028 45 0 species 512 0 species 1 Corynebacterium uterequi 1072256 75 species 0 1 Corynebacterium glyciniphilum 1404244 136857 Corynebacterium testudinoris 1 species 0 72 2 2624378 115 0 no rank species 0 75 702967 Corynebacterium sp. NML98-0116 1 Corynebacterium sp. ATCC 6931 1 1487956 40 0 species species 0 41 401472 1 Corynebacterium ureicelerivorans 136 species 0 1 Corynebacterium variabile 1727 84 species 0 Corynebacterium deserti 1 1408191 1121358 Corynebacterium doosanense 1 0 species 62 54 0 species Corynebacterium singulare 1 161899 Corynebacterium aquilae 1 203263 81 species 0 42 species 0 1 Corynebacterium epidermidicanis 1050174 108 0 species 1 Corynebacterium frankenforstense 1230998 61 no rank 0 1 697024 genus 0 61 1847725 1 61 species 0 Lawsonella clevelandensis 1 1528099 9418 family 0 22 Mycobacteriaceae 56 1762 1 5121 235 genus 0 Mycobacterium 34 1 1763 0 species 88 29311 Mycobacterium haemophilum 1 Mycobacterium leprae 1 1769 40 0 species 4 77643 422 species group 0 Mycobacterium canettii 1 78331 76 species 0 3 Mycobacterium tuberculosis 1 1773 346 126 species 0 33894 Mycobacterium africanum 1 0 biotype 107 0 biotype 113 1765 Mycobacterium bovis 1 species group 0 165 2249310 1 0 species 165 722731 1 Mycobacterium shigaense 0 species 303 1781 Mycobacterium marinum 1 8 120793 1332 0 species group Mycobacterium paraintracellulare 1 1138383 48 0 species 701042 1 Mycobacterium marseillense species 0 115 401 103 species 0 Mycobacterium intracellulare 4 1 1767 78 subspecies 0 1 Mycobacterium yongonense 1203599 0 subspecies 155 222805 1 Mycobacterium chimaera subspecies 0 65 35617 Mycobacterium indicus pranii 1 1 Mycobacterium colombiense 339268 152 species 0 1764 1 Mycobacterium avium species 0 616 0 species 144 1809 Mycobacterium ulcerans 1 1 Mycobacterium liflandii 261524 156 species 0 482462 1 Mycobacterium dioxanotrophicus 0 species 197 no rank 0 1872 2642494 13 1682113 Mycobacterium sp. YC-RL4 1 0 species 166 1 Mycobacterium sp. NRRL B-3805 1570328 156 0 species species 0 97 1561223 Mycobacterium sp. QIA-37 1 1 Mycobacterium sp. KMS 189918 145 0 species 164 species 0 1 Mycobacterium sp. VKM Ac-1817D 1273687 115 0 species 1 Mycobacterium sp. EPa45 1545728 137 species 0 1 Mycobacterium sp. JLS 164757 194 species 0 Mycobacterium sp. djl-10 1 1879023 164756 1 Mycobacterium sp. MCS species 0 139 55 species 0 1 Mycobacterium sp. MOTT36Y 1168287 138 0 species Mycobacterium sp. PYR15 1 2051552 125 0 species Mycobacterium sp. WY10 1 1920667 species 0 241 212767 Mycobacterium sp. JS623 1 Mycobacterium kansasii 1 1768 167 0 species 5 670516 1360 0 genus species 0 960 36809 Mycobacterium abscessus 1 1578165 Mycobacterium saopaulense 1 species 0 77 1520670 1 Mycobacterium stephanolepidis 0 species 77 1 Mycobacterium immunogenum 83262 135 0 species species 0 111 1774 Mycobacterium chelonae 1 0 genus 125 697025 1 species 0 125 639313 1 Hoyosella subflava 310 genus 0 2 1073531 species 0 141 1788 1 Mycobacterium terrae 875328 1 Mycobacterium sinense species 0 169 1866885 13 genus 0 2480 0 species 182 1771 1 Mycobacterium phlei 0 species 150 36814 Mycobacterium rhodesiae 1 149 species 0 Mycobacterium fortuitum 1 1766 1795 1 Mycobacterium neoaurum 0 species 156 species 0 166 758802 1 Mycobacterium litorale species 0 138 1797 1 Mycobacterium thermoresistibile 1 Mycobacterium chubuense 1800 196 species 0 182 0 species 1 Mycobacterium goodii 134601 1810 Mycobacterium vaccae 1 0 species 224 0 species 223 1772 1 Mycobacterium smegmatis Mycobacterium gilvum 1 1804 258 species 0 243 species 0 Mycobacterium aurum 1 1791 Mycobacterium vanbaalenii 1 110539 213 species 0 Tsukamurellaceae 4 1 85028 355 2 family 0 Tsukamurella 3 2060 1 353 genus 0 3 Tsukamurella tyrosinosolvens 1 57704 212 0 species 0 species 138 2061 1 Tsukamurella paurometabola 85025 1 Nocardiaceae 31 0 family 14 5921 1827 1 23 Rhodococcus 0 genus 71 4131 334542 1 Rhodococcus qingshengii species 0 141 Rhodococcus aetherivorans 1 191292 187 species 0 species 0 246 1830 1 Rhodococcus ruber 638 0 species Rhodococcus opacus 1 37919 103816 1 Rhodococcus pyridinivorans 0 species 200 132919 Rhodococcus jostii 1 species 0 275 Rhodococcus hoagii 1 43767 167 0 species 179 0 species Rhodococcus fascians 1 1828 192944 12 no rank 0 1585 species 0 115 1564114 Rhodococcus sp. B7740 1 species 0 160 1653478 1 Rhodococcus sp. PBTS 1 109 0 species Rhodococcus sp. YL-1 1 1045808 1807790 Rhodococcus sp. BH4 1 0 species 65 0 species 143 1570939 1 Rhodococcus sp. 2G 0 species 77 679318 Rhodococcus sp. WMMA185 1 1723645 1 Rhodococcus sp. 008 species 0 90 species 0 156 935199 1 Rhodococcus sp. p52 1 Rhodococcus sp. PBTS 2 1653479 108 0 species 1 Rhodococcus sp. H-CA8f 1727214 108 0 species species 0 235 1033922 Rhodococcus sp. WB1 1 0 species 219 1805827 Rhodococcus sp. MTM3W5.2 1 1829 1 Rhodococcus rhodochrous species 0 174 1833 Rhodococcus erythropolis 1 species 0 268 1817 1 7 Nocardia 0 genus 15 1776 37332 1 Nocardia seriolae 0 species 225 37326 Nocardia brasiliensis 1 0 species 517 1 Nocardia cyriacigeorgica 135487 356 0 species 1 Nocardia terpenica 455432 226 species 0 37329 1 Nocardia farcinica 0 species 231 1 Nocardia nova 37330 206 0 species 1065 family 0 8 85026 1065 0 genus 17 Gordonia 8 2053 1 160 species 0 Gordonia polyisoprenivorans 1 84595 0 no rank 283 2657482 2 118 species 0 Gordonia sp. YC-JH1 1 2059875 165 0 species Gordonia sp. KTR9 1 337191 0 species 123 2055 1 Gordonia terrae 2054 Gordonia bronchialis 1 0 species 172 1136941 Gordonia phthalatica 1 species 0 152 species 0 158 1004901 Gordonia iterans 1 Dietziaceae 4 85029 1 315 family 0 3 1 37914 3 Dietzia 1 genus 0 312 2617939 1 no rank 0 208 712270 Dietzia sp. oral taxon 368 1 species 0 208 103 0 species 1 Dietzia timorensis 499555 0 family 112 316606 1 1 286801 112 0 genus 1 Segniliparus rotundus 286802 112 0 species order 0 12 1896 85012 1 Streptosporangiales 14 Streptosporangiaceae 4 1 2004 895 6 0 family Nonomuraea 2 83681 1 518 genus 0 7 511 0 no rank 1 2593643 511 species 0 1 Nonomuraea sp. ATCC 55076 1909395 371 genus 0 1 2000 Streptosporangium roseum 1 2001 371 species 0 2012 2 family 0 191 2019 1 Thermomonospora 2 genus 0 3 191 188 0 species Thermomonospora curvata 1 2020 798 3 family 0 Nocardiopsaceae 7 1 83676 Nocardiopsis 4 1 2013 718 8 genus 0 0 species 284 2014 1 Nocardiopsis dassonvillei 53437 Nocardiopsis alba 1 species 0 175 1 Nocardiopsis gilva 280236 251 0 species 77 0 genus 1 2 Thermobifida 83677 1 76 0 species Thermobifida fusca 1 2021 Frankiales 7 85013 1 1758 order 0 21 8 0 family 1737 1 74712 6 Frankiaceae genus 0 16 1729 1854 1 Frankia 5 0 species 333 298654 1 Frankia inefficax no rank 0 331 2632575 1 0 species 331 298653 Frankia sp. EAN1pec 1 0 species 319 106370 1 Frankia casuarinae 1859 1 Frankia alni 0 species 730 1 414714 Catenulisporales 4 9 order 0 1153 0 family 11 1144 414877 1 3 Catenulisporaceae 1 414878 2 Catenulispora 1 0 genus 1133 Catenulispora acidiphila 1 304895 1132 species 0 85014 3 0 order 222 222 0 family 7 Glycomycetaceae 3 85034 1 283810 1 Stackebrandtia 2 genus 0 1 215 283811 1 Stackebrandtia nassauensis 0 species 214 1159 order 0 2 19 Actinomycetales 2037 1 1157 0 family 17 Actinomycetaceae 18 2049 1 1 2529408 39 genus 0 species 0 39 52773 1 Actinomyces meyeri 1 1654 9 Actinomyces 19 genus 0 805 1852377 Actinomyces pacaensis 1 0 species 45 0 species 47 1912795 1 Actinomyces sp. VUL4_3 73 0 species Actinomyces gaoshouyii 1 1960083 366 no rank 0 3 2609248 2081702 Actinomyces sp. oral taxon 897 1 species 0 102 169 0 species Actinomyces sp. oral taxon 414 1 712122 1851395 1 Actinomyces sp. Chiba101 0 species 95 Actinomyces oris 1 544580 89 0 species Actinomyces radicidentis 1 111015 166 0 species 115 0 genus 1 2050 2051 Mobiluncus curtisii 1 0 species 115 53 1 genus 0 2 Arcanobacterium 1 28263 52 0 species 1 Arcanobacterium haemolyticum 28264 Actinotignum 2 1 1653174 62 1 0 genus 0 species 61 59505 1 Actinotignum schaalii 1 1069494 Trueperella 2 1 genus 0 66 Trueperella pyogenes 1 1661 65 species 0 1643682 1 Geodermatophilales 6 order 0 3 632 629 15 family 0 Geodermatophilaceae 5 1 85030 0 genus 205 88138 1 477641 Modestobacter marinus 1 0 species 205 1860 1 genus 0 211 1861 Geodermatophilus obscurus 1 0 species 211 4 genus 0 198 1 38501 Blastococcus 2 194 0 species 1 Blastococcus saxobsidens 138336 0 order 8 7315 85010 1 37 Pseudonocardiales 56 family 0 7307 1 2070 36 Pseudonocardiaceae 1 2071 2 Saccharothrix 1 0 genus 259 0 species 258 103731 1 Saccharothrix espanaensis 1 142577 182 0 genus 530584 1 Prauserella marina species 0 182 5 genus 0 634 1 40566 3 Actinosynnema 42197 Actinosynnema pretiosum 1 species 0 316 Actinosynnema mirum 1 40567 313 species 0 1 65496 Actinoalloteichus 6 12 0 genus 1095 295 0 species 1 Actinoalloteichus sp. ADI127-7 1612552 140 0 species 1 Actinoalloteichus hymeniacidonis 340345 1470176 1 Actinoalloteichus hoggarensis 0 species 205 2644606 2 0 no rank 443 1612551 1 Actinoalloteichus sp. GBA129-24 species 0 249 2072503 1 Actinoalloteichus sp. AHMU CJ021 species 0 194 298 0 genus 1 165301 species 0 298 1586287 1 Lentzea guizhouensis 1914 0 genus 43 8 Pseudonocardia 1847 1 1572 no rank 0 6 2619320 Pseudonocardia sp. HH130629-09 1 1641402 225 species 0 277 species 0 Pseudonocardia sp. EC080610-09 1 1688404 308 species 0 Pseudonocardia sp. AL041005-10 1 445576 1 Pseudonocardia sp. EC080619-01 1096856 254 0 species Pseudonocardia sp. HH130630-07 1 1690815 298 0 species 210 0 species Pseudonocardia sp. EC080625-04 1 1096868 1 Pseudonocardia dioxanivorans 240495 299 species 0 1813 1 Amycolatopsis 7 genus 0 12 1758 1 Amycolatopsis japonica 208439 256 0 species 2 2618356 479 no rank 0 Amycolatopsis sp. BJA-103 1 1911175 227 species 0 1 Amycolatopsis sp. AA4 1896961 252 0 species Amycolatopsis orientalis 1 31958 474 species 0 33910 1 Amycolatopsis mediterranei species 0 329 species 0 208 1814 Amycolatopsis methanolica 1 1 1851 120 genus 0 0 species 120 1852 Saccharomonospora viridis 1 2 Kutzneria 1 43356 253 7 genus 0 0 species 246 43357 Kutzneria albida 1 674734 1 0 genus 231 231 0 no rank 1 2636053 231 species 0 1 Alloactinosynnema sp. L-07 1653480 genus 0 2 291 2029 1 2 Kibdelosporangium species 0 289 860235 1 Kibdelosporangium phytohabitans 216 genus 0 1 1835 1 Saccharopolyspora erythraea 1836 216 0 species 2015 order 0 3 25 Bifidobacteriales 85004 1 2012 8 family 0 24 Bifidobacteriaceae 1 31953 80 genus 0 2 Scardovia 2 196081 1 78259 1 Scardovia inopinata 0 species 78 1 2701 283 0 genus 283 0 species 1 Gardnerella vaginalis 2702 19 0 genus 1597 1 1678 19 Bifidobacterium 1685 Bifidobacterium breve 1 species 0 138 0 species 65 28026 Bifidobacterium pseudocatenulatum 1 0 species 40 33905 Bifidobacterium thermophilum 1 1687 1 Bifidobacterium coryneforme 0 species 50 1683 Bifidobacterium angulatum 1 0 species 49 98 40 0 species 2 Bifidobacterium catenulatum 1 1686 subspecies 0 58 630129 Bifidobacterium kashiwanohense 1 84 species 0 1 Bifidobacterium animalis 28025 1 Bifidobacterium actinocoloniiforme 638619 140 species 0 0 species 113 35760 Bifidobacterium choerinum 1 Bifidobacterium asteroides 1 1684 69 0 species Bifidobacterium scardovii 1 158787 104 0 species species 0 240 216816 Bifidobacterium longum 1 1689 1 Bifidobacterium dentium 0 species 69 0 species 98 1694 Bifidobacterium pseudolongum 1 0 species 94 1681 Bifidobacterium bifidum 1 56 0 species Bifidobacterium indicum 1 1691 71 0 species Bifidobacterium adolescentis 1 1680 genus 0 44 196082 1 78258 Parascardovia denticolens 1 0 species 44 18 85008 3288 0 order 1 28056 Micromonosporaceae 18 39 family 0 3288 779 genus 0 6 Plantactinospora 4 673534 1 no rank 0 773 2631981 3 2024580 1 Plantactinospora sp. KBS50 0 species 275 264 0 species 1 Plantactinospora sp. BB1 2071627 1 Plantactinospora sp. BC1 2108470 234 species 0 1 168694 3 Salinispora 3 genus 0 284 128 species 0 1 Salinispora tropica 168695 153 species 0 1 Salinispora arenicola 168697 Micromonospora 4 1 1873 757 11 genus 0 1003110 1 Verrucosispora maris species 0 207 2617518 1 no rank 0 264 Micromonospora sp. L5 1 648999 264 species 0 275 0 species Micromonospora aurantiaca 1 47850 1865 1 6 Actinoplanes 0 genus 17 1429 268 species 0 1 Actinoplanes friuliensis 196914 1866 Actinoplanes missouriensis 1 species 0 313 3 2626549 831 0 no rank 1 Actinoplanes sp. SE50 2033844 271 0 species 134676 1 Actinoplanes sp. SE50/110 0 species 271 289 species 0 1 Actinoplanes sp. N902-109 649831 2550 0 order 12 12 Candidatus Nanopelagicales 2039638 1 2162846 11 family 0 2538 Candidatus Planktophila 7 1 622681 1361 7 genus 0 1 Candidatus Planktophila vernalis 1884907 238 0 species species 0 262 1884914 Candidatus Planktophila dulcis 1 species 0 149 1884904 Candidatus Planktophila sulfonica 1 1 Candidatus Planktophila limnetica 573600 239 0 species 1 Candidatus Planktophila versatilis 1884905 213 species 0 1 Candidatus Planktophila lacus 1884913 253 species 0 Candidatus Nanopelagicus 4 1 2039639 1177 7 genus 0 1884915 1 Candidatus Nanopelagicus hibericus species 0 366 species 0 362 1884634 1 Candidatus Nanopelagicus limnes 442 species 0 Candidatus Nanopelagicus abundans 1 1884916 1 52018 184 no rank 0 species 0 184 1650658 Actinobacteria bacterium IMCC26256 1 1 order 0 293 1 622452 Kineosporiales 4 83778 1 Kineosporiaceae 3 0 family 1 292 0 genus 1 291 33981 1 2 Kineococcus species 0 290 131568 1 Kineococcus radiotolerans 2 1643818 158 0 no rank 2 genus 0 158 1 147067 Thermobispora 2 0 species 156 2006 1 Thermobispora bispora 64 order 0 32372 1 85011 Streptomycetales 82 2062 1 Streptomycetaceae 81 0 family 85 32308 1 2063 Kitasatospora 5 7 0 genus 2227 no rank 0 395 2633591 1 species 0 395 2018025 Kitasatospora sp. MMS16-BH015 1 930 species 0 1 Kitasatospora albolonga 68173 0 species 587 2066 1 Kitasatospora setae 1 Kitasatospora aureofaciens 1894 308 0 species 29996 412 genus 0 75 Streptomyces 1 1883 408015 Streptomyces xiamenensis 1 species 0 209 species group 0 1655 1477431 2 1382 species 0 Streptomyces coelicolor 1 1902 42239 Streptomyces sampsonii 1 species 0 273 8164 no rank 0 24 2593676 1812480 1 Streptomyces sp. fd1-xmd 0 species 325 Streptomyces sp. P3 1 2135430 490 0 species 1984801 Streptomyces sp. CLI2509 1 species 0 305 363 species 0 Streptomyces sp. Mg1 1 465541 862751 Streptomyces sp. SirexAA-E 1 0 species 210 Streptomyces sp. 3211 1 1964449 395 species 0 Streptomyces sp. CdTB01 1 1725411 353 0 species Streptomyces sp. S8 1 1837283 248 0 species 1849967 Streptomyces sp. SAT1 1 0 species 484 600 0 species Streptomyces sp. M56 1 1495638 0 species 347 1262452 1 Streptomyces sp. 769 250 species 0 1 Streptomyces sp. CCM_MD2014 1561022 1841249 1 Streptomyces sp. RTd22 0 species 305 296 species 0 Streptomyces sp. Tue 6075 1 1661694 444103 Streptomyces sp. CNQ-509 1 species 0 326 Streptomyces sp. TN58 1 234612 305 species 0 401 species 0 1 Streptomyces sp. FR-008 206662 0 species 216 1265601 1 Streptomyces sp. PAMC 26508 319 0 species Streptomyces sp. MOE7 1 1961713 1 Streptomyces sp. WAC00288 2094021 295 species 0 species 0 422 1972846 1 Streptomyces sp. Sge12 1751294 Streptomyces sp. 4F 1 species 0 202 Streptomyces sp. CFMR 7 1 1649184 309 species 0 398 0 species 1 Streptomyces sp. CMB-StM0423 2059884 Streptomyces griseochromogenes 1 68214 303 0 species species 0 258 42684 1 Streptomyces collinus 0 species 341 553510 Streptomyces gilvosporeus 1 2 629295 553 species group 0 species subgroup 0 308 1482558 1 308 0 species 1 Streptomyces globisporus 1908 0 species subgroup 245 1482596 1 0 species 245 1911 1 Streptomyces griseus 263 0 species Streptomyces leeuwenhoekii 1 1437453 1 Streptomyces albireticuli 1940 280 species 0 1 Streptomyces alboflavus 67267 327 0 species 334 species 0 1 Streptomyces reticuli 1926 636 0 species Streptomyces pactum 1 68249 species 0 779 1912 Streptomyces hygroscopicus 1 277 species 0 1 Streptomyces puniciscabiei 164348 371 0 species 1 Streptomyces alfalfae 1642299 1914 1 Streptomyces lavendulae 0 species 396 0 species 231 1169025 Streptomyces pratensis 1 1 Streptomyces avermitilis 33903 373 0 species 1783515 1 Streptomyces sp. S10(2016) 0 species 310 Streptomyces lydicus 1 47763 851 species 0 392 0 species 1 Streptomyces scabiei 1930 Streptomyces venezuelae 1 54571 673 species 0 2354 species 0 1 Streptomyces albulus 68570 215 0 species Streptomyces chartreusis 1 1969 0 species 296 1907 1 Streptomyces glaucescens 261 0 species 1 Streptomyces cattleya 29303 267 0 species Streptomyces sp. XZHG99 1 2049881 742 0 species 1 Streptomyces albus 1888 1 Streptomyces xinghaiensis 1038928 278 0 species 368 0 species 1 Streptomyces ambofaciens 1889 1616117 1 Streptomyces formicae 0 species 431 Streptomyces clavuligerus 1 1901 302 species 0 362257 Streptomyces vietnamensis 1 species 0 361 245 species 0 Streptomyces pristinaespiralis 1 38300 Streptomyces niveus 1 193462 297 species 0 501 0 species Streptomyces bingchenggensis 1 379067 1144 0 species 1 Streptomyces autolyticus 75293 247 0 species Streptomyces violaceoruber 1 1935 Streptomyces parvulus 1 146923 228 species 0 1950 1 Streptomyces peucetius species 0 218 68192 Streptomyces cyaneogriseus 1 0 species 236 1 Streptomyces noursei 1971 363 0 species 92644 1 Streptomyces malaysiensis 0 species 431 236 species 0 Streptomyces rubrolavendulae 1 285473 1916 Streptomyces lividans 1 species 0 311 0 species 333 68280 Streptomyces violaceusniger 1 species 0 281 68202 1 Streptomyces fulvissimus species 0 408 1915 Streptomyces lincolnensis 1 Streptomyces pluripotens 1 1355015 254 0 species 14413 0 order 86 134 Micrococcales 85006 1 99 0 no rank 1 577468 1 2038 99 0 genus 0 species 99 2039 Tropheryma whipplei 1 Promicromonosporaceae 8 85017 1 1097 0 family 11 0 genus 211 186188 1 species 0 211 186189 1 Xylanimonas cellulosilytica 434 3 genus 0 Cellulosimicrobium 3 1 157920 0 no rank 221 2624466 1 1 Cellulosimicrobium sp. TH-20 1980001 221 species 0 210 species 0 Cellulosimicrobium cellulans 1 1710 0 genus 2 441 254250 1 Isoptericola 3 Isoptericola dokdonensis 1 372663 249 0 species 190 0 species Isoptericola variabilis 1 139208 0 family 57 85022 2 1 43673 2 Jonesia 1 0 genus 57 1 Jonesia denitrificans 43674 56 species 0 1 1268 36 Micrococcaceae 24 family 0 3457 Micrococcus 2 1 1269 95 1 0 genus 0 species 94 1270 Micrococcus luteus 1 1 1645 64 genus 0 0 species 64 1646 1 Renibacterium salmoninarum 0 genus 104 1742992 1 1 Paenarthrobacter aurescens 43663 104 species 0 65 0 genus 1 1868332 556325 1 Neomicrococcus aestuarii species 0 65 1 1663 15 Arthrobacter 25 0 genus 1923 37928 1 Arthrobacter crystallopoietes species 0 81 12 235627 1596 0 no rank 1 Arthrobacter sp. YN 2020486 82 species 0 1 Arthrobacter sp. ATCC 21022 1771959 66 0 species 420 species 0 Arthrobacter sp. PGP41 1 2079227 Arthrobacter sp. U41 1 1849032 146 0 species species 0 84 1806905 Arthrobacter sp. ZXY-2 1 78 0 species Arthrobacter sp. Rue61a 1 1118963 species 0 107 290399 Arthrobacter sp. FB24 1 172 species 0 1 Arthrobacter sp. ERGS1:01 1704044 1494608 Arthrobacter sp. PAMC 25486 1 species 0 104 1357915 1 Arthrobacter sp. QXT-31 0 species 129 1690248 Arthrobacter sp. LS16 1 species 0 116 1 Arthrobacter sp. YC-RL1 1652545 92 0 species 656366 1 Arthrobacter alpinus 0 species 221 0 genus 85 2078575 1 1618207 1 Arthrobacter sp. IHBB 11108 0 species 85 166 0 genus 1 596707 37927 Sinomonas atrocyanea 1 0 species 166 154 2 genus 0 Glutamicibacter 2 1 1742989 152 species 0 1 Glutamicibacter arilaitensis 256701 170 1 genus 0 Rothia 3 1 32207 108 0 species Rothia mucilaginosa 1 43675 61 0 species 1 Rothia dentocariosa 2047 4 0 genus 287 1 1742993 Pseudarthrobacter 4 Pseudarthrobacter phenanthrenivorans 1 361575 108 0 species species 0 78 85085 1 Pseudarthrobacter chlorophenolicus 1 Pseudarthrobacter sulfonivorans 121292 97 species 0 genus 0 4 320 57493 1 4 Kocuria 107 species 0 Kocuria flava 1 446860 species 0 92 72000 Kocuria rhizophila 1 species 0 117 71999 Kocuria palustris 1 2 85018 123 0 family 2 Dermatophilus 1 1862 123 1 0 genus 122 0 species Dermatophilus congolensis 1 1863 6 Cellulomonadaceae 85016 1 723 0 family 1 722 genus 0 14 5 Cellulomonas 1707 1 Cellulomonas gilvus 1 11 146 species 0 160 no rank 0 1 2620175 160 0 species 1 Cellulomonas sp. PSBB021 2003551 199 0 species 1 Cellulomonas flavigena 1711 1708 Cellulomonas fimi 1 0 species 203 230 2 0 family 3 Sanguibacteraceae 1 145360 228 0 genus 4 2 Sanguibacter 60919 1 1 Sanguibacter keddieii 60920 224 0 species 220 3 0 family 3 Brevibacteriaceae 1 85019 Brevibacterium 2 1696 1 217 0 genus 2 Brevibacterium linens 1 1703 215 species 0 145357 1 Dermacoccaceae 7 0 family 11 408 149 0 genus 2 Dermacoccus 2 57495 1 1274 1 Dermacoccus nishinomiyaensis species 0 147 96 1 0 genus Kytococcus 2 1 57499 1276 1 Kytococcus sedentarius 0 species 95 152 1 0 genus Luteipulveratus 2 1 745364 151 0 species Luteipulveratus mongoliensis 1 571913 5501 38 0 family Microbacteriaceae 46 1 85023 447237 1 0 genus 610 0 no rank 610 2626248 1 610 species 0 Frondihabitans sp. PAMC 28766 1 1795630 genus 0 94 337004 1 94 species 0 1 Microcella alkaliphila 279828 genus 0 1 225 33877 1 Agromyces 2 0 species 224 453304 Agromyces aureus 1 Microbacterium 14 1 33882 1867 17 0 genus 84292 Microbacterium chocolatum 1 0 species 135 no rank 0 1120 2609290 8 species 0 133 1795053 1 Microbacterium sp. PAMC 28756 1714373 1 Microbacterium sp. No. 7 0 species 217 118 0 species Microbacterium sp. XT11 1 367477 116 species 0 Microbacterium sp. 1.5R 1 1916917 0 species 159 1906742 Microbacterium sp. BH-3-3-3 1 123 species 0 Microbacterium sp. str. 'China' 1 2103230 1696072 1 Microbacterium sp. CGR1 0 species 112 142 0 species Microbacterium sp. TPU 3598 1 1938334 116 species 0 Microbacterium aurum 1 36805 1 Microbacterium testaceum 2033 165 0 species Microbacterium hominis 1 162426 179 0 species species 0 135 300019 Microbacterium paludicola 1 1434032 1 0 genus 68 1 Pontimonas salivibrio 1159327 68 species 0 1 110932 Leifsonia 2 2 genus 0 302 300 species 0 1 Leifsonia xyli 1575 0 no rank 200 1655488 3 3 1655489 200 0 clade 3 Rhodoluna 529883 1 200 0 genus 4 107 0 species Rhodoluna lacicola 1 529884 1 Candidatus Rhodoluna planktonica 535712 89 0 species 502 8 0 genus 4 Curtobacterium 1 2034 340 no rank 0 2 257496 Curtobacterium sp. MR_MD2014 1 1561023 199 species 0 Curtobacterium sp. BH-2-1-1 1 1905847 141 species 0 154 species 0 1 Curtobacterium pusillum 69373 1 genus 0 159 1 1759331 2 Cnuibacter 158 0 species 1 Cnuibacter physcomitrellae 1619308 1 69578 Cryobacterium 3 8 0 genus 233 0 species 111 670052 Cryobacterium arcticum 1 no rank 0 114 2649013 1 1978566 1 Cryobacterium sp. LW097 0 species 114 1 genus 0 131 1 518733 Microterricola 2 Microterricola viridarii 1 412690 130 species 0 61 0 genus 1 1705353 61 species 0 Aurantimicrobium minutum 1 708131 1 33886 3 Rathayibacter 1 0 genus 242 145458 1 Rathayibacter toxicus 0 species 96 145 species 0 Rathayibacter tritici 1 33888 13 0 genus 769 1 1573 6 Clavibacter 1 28447 5 Clavibacter michiganensis 183 0 species 756 127 subspecies 0 Clavibacter insidiosus 1 33014 161 subspecies 0 1 Clavibacter sepedonicus 31964 1874630 1 Clavibacter capsici 0 subspecies 151 1 Clavibacter nebraskensis 31963 134 0 subspecies 720 family 0 2 Intrasporangiaceae 6 85021 1 1 267408 175 0 genus 1 2663846 175 0 no rank 1658671 Arsenicicoccus sp. oral taxon 190 1 species 0 175 265976 1 0 genus 176 Serinicoccus sp. JLT9 1 1758689 176 species 0 204 8 genus 0 2 Janibacter 1 53457 196 0 species Janibacter indicus 1 857417 1 53357 163 0 genus 53358 1 Intrasporangium calvum species 0 163 3 Beutenbergiaceae 1 125316 218 2 family 0 0 genus 3 216 84756 1 Beutenbergia 2 84757 1 Beutenbergia cavernae species 0 213 1474 family 0 12 Dermabacteraceae 10 85020 1 77 4 0 genus 2 Devriesea 1 472568 Devriesea agamarum 1 472569 73 0 species genus 0 72 36739 1 1630135 1 Dermabacter vaginalis species 0 72 1 43668 6 Brachybacterium 8 0 genus 1313 Brachybacterium ginsengisoli 1 1331682 181 species 0 2017485 1 Brachybacterium sp. VR2415 species 0 147 Brachybacterium sp. VM2412 1 2017484 672 0 species 0 species 154 43669 Brachybacterium faecium 1 2623841 1 0 no rank 151 151 species 0 Brachybacterium sp. P6-10-X1 1 1903186 1297 33 phylum 0 2967 0 class 18 2967 188787 1 Deinococci 33 2762275 2 order 0 146 146 family 0 2 332247 1 332248 Truepera 2 1 genus 0 146 145 0 species 1 Truepera radiovictrix 332249 1529 order 0 16 Deinococcales 15 118964 1 183710 1 Deinococcaceae 14 family 0 8 1513 1505 34 genus 0 Deinococcus 13 1 1298 502394 Deinococcus gobiensis 1 0 species 144 55148 Deinococcus proteolyticus 1 0 species 235 0 species 88 68909 Deinococcus geothermalis 1 310783 1 Deinococcus deserti species 0 96 Deinococcus peraridilitoris 1 432329 101 0 species 110 0 species Deinococcus actinosclerus 1 1768108 107 species 0 1 Deinococcus puniceus 1182568 2623546 1 no rank 0 108 2080419 1 Deinococcus sp. NW-56 0 species 108 1309411 1 Deinococcus soli Cha et al. 2016 0 species 105 1299 Deinococcus radiodurans 1 0 species 107 126 species 0 Deinococcus swuensis 1 1182571 Deinococcus maricopensis 1 309887 144 species 0 1274 5 0 order Thermales 15 1 68933 13 0 family 1269 1 188786 14 Thermaceae 208447 1 0 genus 118 187137 Oceanithermus profundus 1 0 species 118 270 1 8 Thermus 0 genus 16 812 37636 Thermus scotoductus 1 0 species 75 species 0 99 56957 1 Thermus oshimai species 0 114 271 Thermus aquaticus 1 1 Thermus thermophilus 274 268 species 0 456163 Thermus parvatiensis 1 0 species 95 2619321 1 0 no rank 83 83 0 species Thermus sp. CCB_US3_UF1 1 1111069 56956 1 Thermus brockianus species 0 62 0 genus 2 251 65551 1 3 Meiothermus 1 Meiothermus silvanus 52022 107 species 0 1 Meiothermus ruber 277 142 0 species 1 186191 75 0 genus 1 Marinithermus hydrothermalis 186192 75 species 0 0 phylum 166 67819 3 Fimbriimonadia 3 1663419 1 166 class 0 7 2 1663425 159 0 order 159 family 0 2 1663426 1 1005038 Fimbriimonas 2 1 0 genus 159 1 Fimbriimonas ginsengisoli 1005039 158 0 species 29605 2 0 phylum Tenericutes 102 1 544448 972 no rank 0 2 713063 0 species 468 1911683 1 Tenericutes bacterium MZ-XQ Tenericutes bacterium MO-XQ 1 1911684 504 species 0 456 no rank 0 2 2799557 genus 0 2 456 1912503 1 Candidatus Izimaplasma 2 2624196 1 0 no rank 454 species 0 454 1541959 1 Candidatus Izimaplasma sp. HR1 Mollicutes 97 31969 1 28175 0 class 73 186329 1 Acholeplasmatales 13 0 order 6 2688 12 Acholeplasmataceae 1 2146 2682 18 family 0 16 0 genus 1471 1 2147 Acholeplasma 5 species 0 177 61635 1 Acholeplasma brassicae species 0 559 38986 1 Acholeplasma palmae 35623 Acholeplasma oculi 1 species 0 398 321 0 species Acholeplasma laidlawii 1 2148 6 Candidatus Phytoplasma 1 33926 1193 23 0 genus 3 85620 673 species group 0 Maize bushy stunt phytoplasma 1 202462 227 species 0 1 Aster yellows witches'-broom phytoplasma 229545 230 0 species species 0 216 100379 Onion yellows phytoplasma 1 213 species group 0 1 85632 species 0 213 59748 1 Candidatus Phytoplasma australiense 284 0 species group 1 85630 37692 Candidatus Phytoplasma mali 1 species 0 284 44 Mycoplasmatales 1 2085 12837 43 0 order 12794 family 0 47 43 Mycoplasmataceae 2092 1 Ureaplasma 3 2129 1 665 genus 0 5 2130 1 Ureaplasma urealyticum species 0 318 species 0 342 134821 Ureaplasma parvum 1 12 2767358 3698 genus 0 species 0 233 48003 Mycoplasma pullorum 1 0 species 333 2115 1 Mycoplasma fermentans 2109 1 Mycoplasma synoviae species 0 204 1 Mycoplasma pulmonis 2107 346 0 species 581 species 0 1 Mycoplasma bovis 28903 Mycoplasma agalactiae 1 2110 374 0 species 0 species 294 2094 Mycoplasma arginini 1 29555 1 Mycoplasma canis 0 species 364 1 Mycoplasma cynos 171284 311 species 0 2112 Mycoplasma bovigenitalium 1 species 0 212 166 species 0 Mycoplasma californicum 1 2113 29553 Mycoplasma bovirhinis 1 species 0 280 1 2093 27 Mycoplasma 115 genus 0 8384 1 Mycoplasma hyorhinis 2100 320 0 species 2111 1 Mycoplasma arthritidis species 0 138 29501 1 Mycoplasma haemofelis 0 species 441 0 species 174 136241 1 Mycoplasma haemocanis 2096 1 Mycoplasma gallisepticum 0 species 244 2104 1 Mycoplasma pneumoniae 0 species 41 218 0 species Mycoplasma dispar 1 86660 3 656088 2209 species group 0 species 0 626 2095 Mycoplasma capricolum 1 species 0 538 2105 Mycoplasma leachii 1 1 Mycoplasma mycoides 2102 1045 0 species 291 species 0 Mycoplasma canadense 1 29554 0 species 141 57372 Mycoplasma suis 1 363 species 0 1 Mycoplasma yeatsii 51365 Mycoplasma hyopneumoniae 1 2099 488 0 species Mycoplasma putrefaciens 1 2123 356 species 0 Mycoplasma wenyonii 1 65123 78 species 0 species 0 292 50052 Mycoplasma crocodyli 1 250 0 species Mycoplasma bovoculi 1 45362 511 species 0 1 Mycoplasma hominis 2098 2118 1 Mycoplasma mobile species 0 360 1 Mycoplasma penetrans 28227 430 0 species 1 2683645 252 no rank 0 252 species 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1 1749074 1 Mycoplasma genitalium 2097 167 species 0 171632 1 Mycoplasma ovis 0 species 94 157 species 0 1 Mycoplasma flocculare 2128 Mycoplasma parvum 1 984991 254 0 species 1 186328 39 Entomoplasmatales 23 0 order 12577 33925 1 14 Entomoplasmataceae 0 family 16 3713 46238 1 Entomoplasma 5 genus 0 15 1121 81459 Entomoplasma melaleucae 1 0 species 372 74700 1 Entomoplasma freundtii 0 species 149 214888 1 Entomoplasma luminosum species 0 249 336 0 species 1 Entomoplasma somnilux 215578 2576 0 genus 57 Mesoplasma 8 46239 1 Mesoplasma chauliocola 1 216427 329 0 species 326 0 species 1 Mesoplasma tabanidae 219745 366 0 species Mesoplasma entomophilum 1 2149 285 species 0 Mesoplasma coleopterae 1 324078 0 species 670 2151 Mesoplasma florum 1 248 species 0 Mesoplasma lactucae 1 138853 225999 Mesoplasma syrphidae 1 0 species 295 0 family 30 8841 2131 1 Spiroplasmataceae 24 8811 106 genus 0 Spiroplasma 23 1 2132 47834 Spiroplasma kunkelii 1 0 species 395 216942 Spiroplasma litorale 1 0 species 589 0 species 372 2136 1 Spiroplasma monobiae 2137 Spiroplasma apis 1 species 0 264 Spiroplasma taiwanense 1 2145 528 species 0 315358 Spiroplasma eriocheiris 1 species 0 304 216946 Spiroplasma turonicum 1 species 0 553 429 0 species Spiroplasma corruscae 1 216934 273 species 0 Spiroplasma atrichopogonis 1 1114980 1 Spiroplasma sabaudiense 216944 306 species 0 1 Spiroplasma floricola 216937 559 0 species Spiroplasma diminutum 1 216936 467 0 species species 0 438 216938 1 Spiroplasma helicoides 2139 1 Spiroplasma clarkii 0 species 359 Spiroplasma cantharicola 1 362837 490 species 0 0 species 269 2144 1 Spiroplasma mirum 612 no rank 0 2 2637901 306 species 0 1 Spiroplasma sp. TU-14 1898044 species 0 306 1914410 1 Spiroplasma sp. NBRC 100390 Spiroplasma chrysopicola 1 216933 296 0 species 1 Spiroplasma syrphidicola 216945 292 species 0 526 0 species 1 Spiroplasma culicicola 216935 384 species 0 Spiroplasma citri 1 2133 129 0 no rank 1 1859062 262406 1 0 genus 129 species 0 129 166501 Thermobaculum terrenum 1 9792 clade 0 86 1783257 phylum 0 5 2895 74201 1 Verrucomicrobia 26 1 134549 Spartobacteria 3 1 0 class 90 89 4 genus 0 Candidatus Xiphinematobacter 2 1 134550 2648876 1 0 no rank 85 85 species 0 1 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 203494 1 Verrucomicrobiae 6 0 class 2 271 1 48461 Verrucomicrobiales 5 1 0 order 269 1 1647988 Akkermansiaceae 4 1 family 0 268 267 2 0 genus 3 Akkermansia 1 239934 116 species 0 Akkermansia glycaniphila 1 1679444 149 species 0 1 Akkermansia muciniphila 239935 Opitutae 10 414999 1 1663 0 class 5 6 Opitutales 1 415000 850 6 order 0 844 family 0 10 5 Opitutaceae 134623 1 genus 0 304 178440 1 304 species 0 Opitutus terrae 1 107709 1 278955 312 no rank 0 794903 Opitutaceae bacterium TAV5 1 species 0 312 1 1961799 Lacunisphaera 2 1 genus 0 218 217 0 species Lacunisphaera limnophila 1 1838286 Puniceicoccales 3 415001 1 808 0 order 2 family 0 806 415002 2 442430 1 Coraliomargarita 2 genus 0 4 806 0 species 802 395922 1 Coraliomargarita akajimensis 4 1955630 427 0 class 427 2 0 order Methylacidiphilales 4 1 717963 family 0 2 425 717964 1 Methylacidiphilaceae 3 511745 2 genus 0 423 0 species 154 511746 Methylacidiphilum infernorum 1 1 Methylacidiphilum fumariolicum 591154 269 0 species 417295 2 no rank 0 439 243 species 0 Verrucomicrobia bacterium 1 2026799 196 species 0 1 Verrucomicrobia bacterium IMCC26134 1637999 33 203682 3947 0 phylum Phycisphaerae 5 1 666505 641 3 0 class 395 order 0 4 Phycisphaerales 2 666506 1 666507 1 0 family 391 genus 0 391 666508 1 Phycisphaera mikurensis 1 547188 391 0 species 0 order 243 2483366 2 243 family 0 2 2483367 243 genus 0 2 2483368 1941349 1 Phycisphaerae bacterium ST-PulAB-D4 0 species 126 0 species 117 1940790 1 Phycisphaerae bacterium L21-RPul-D3 class 0 569 2517206 3 569 0 order 2 Candidatus Brocadiales 3 1127829 1 567 1 family 0 Candidatus Brocadiaceae 2 1 1127830 380738 1 genus 0 566 1 Candidatus Kuenenia stuttgartiensis 174633 566 species 0 Planctomycetia 25 1 203683 2737 4 class 0 736 order 0 7 2691356 7 Isosphaeraceae 1763524 1 736 family 0 5 Isosphaera 2 127 1 205 genus 0 5 200 species 0 Isosphaera pallida 1 128 1763521 1 Paludisphaera 2 genus 0 2 291 species 0 289 1387353 1 Paludisphaera borealis 0 genus 5 235 466152 1 Singulisphaera 2 1 Singulisphaera acidiphila 466153 230 species 0 47 0 order 1184 1 112 10 Planctomycetales 1 126 Planctomycetaceae 9 11 0 family 1137 506 genus 0 5 Planctomyces 3 118 1 no rank 0 501 2648843 2 1 Planctomyces sp. SH-PL14 1632864 203 0 species 1 Planctomyces sp. SH-PL62 1636152 298 0 species 1 1649480 168 genus 0 species 0 168 120 Planctopirus limnophila 1 1 genus 0 258 1 1936111 Fuerstia 2 1891926 Fuerstia marisgermanicae 1 0 species 257 Rubinisphaera 2 1 1649490 194 1 genus 0 193 0 species 1 Rubinisphaera brasiliensis 119 order 0 255 2691355 3 1 family 0 255 1 1914233 3 Gemmataceae 1 113 2 Gemmata 7 0 genus 254 1 2622970 247 0 no rank 247 0 species 1 Gemmata sp. SH-PL17 1630693 2691354 4 order 0 558 3 2691357 466 0 family 1 genus 0 221 1 265488 2 Rhodopirellula 1 Rhodopirellula baltica 265606 220 0 species 123 1 genus 0 245 125 Pirellula staleyi 1 0 species 245 1 2691358 92 family 0 1 1676125 92 genus 0 0 species 92 1331910 1 Thermogutta terrifontis 4 134625 207 0 phylum 207 2 class 0 4 Kiritimatiellae 1 1921781 order 0 205 1921782 3 205 family 0 4 Kiritimatiellaceae 3 1921783 1 0 genus 1 201 1921784 1 Kiritimatiella 2 200 0 species 1 Kiritimatiella glycovorans 1307763 256845 3 0 phylum 158 1 1313211 Lentisphaeria 3 10 0 class 158 Victivallales 2 278082 1 148 0 order 2 146 0 no rank 1 1674876 1 Victivallales bacterium CCUG 44730 2094242 146 0 species 0 phylum 2585 204428 20 20 Chlamydiia 1 204429 2585 7 0 class 1846 order 0 11 Chlamydiales 13 51291 1 12 809 1835 family 0 1835 0 no rank 12 1113537 1835 30 0 genus 12 Chlamydia 1 810 157 species 0 1 Chlamydia abortus 83555 Chlamydia trachomatis 1 813 122 species 0 85991 Chlamydia pecorum 1 species 0 198 1457141 Chlamydia avium 1 species 0 155 species 0 159 83560 1 Chlamydia muridarum 97 0 species 1 Chlamydia suis 83559 species 0 174 83556 1 Chlamydia felis Chlamydia gallinacea 1 1457153 180 0 species 83557 Chlamydia caviae 1 0 species 147 1 Chlamydia psittaci 83554 216 0 species 200 species 0 Chlamydia pneumoniae 1 83558 732 0 order 5 Parachlamydiales 6 1963360 1 144 0 family 1 2 Simkaniaceae 92712 1 1 34093 143 0 genus 83561 1 Simkania negevensis 0 species 143 429 family 0 2 92713 83551 1 genus 0 273 273 species 0 Parachlamydia acanthamoebae 1 83552 156 genus 0 1 282132 389348 1 Candidatus Protochlamydia naegleriophila 0 species 156 0 family 154 92714 1 71666 1 genus 0 154 1 Waddlia chondrophila 71667 154 species 0 0 clade 142814 1783270 361 3 65842 323 0 phylum 3 Fibrobacteria 1 204430 323 2 class 0 218872 2 order 0 321 204431 1 2 Fibrobacteraceae 0 family 1 321 genus 0 320 832 1 species 0 320 833 1 Fibrobacter succinogenes 350 68336 141361 0 clade 1158 phylum 0 7 1134404 1 795747 Ignavibacteria 7 7 class 0 1158 1 795748 6 Ignavibacteriales 3 order 0 1151 2 1334117 239 family 0 1 1134403 2 Melioribacter 1 genus 0 239 238 0 species Melioribacter roseus 1 1134405 5 family 0 909 1 795749 Ignavibacteriaceae 3 904 2 genus 0 2 Ignavibacterium 1 795750 1 Ignavibacterium album 591197 902 0 species Bacteroidetes 321 976 1 137969 phylum 0 22 67 0 class 101145 1 117743 148 Flavobacteriia Flavobacteriales 147 200644 1 101078 0 order 126 82192 family 0 381 103 Flavobacteriaceae 49546 1 0 genus 529 389486 1 529 0 no rank 1 2648869 529 species 0 1 Sediminicola sp. YIK13 1453352 Muricauda 3 1 111500 802 6 genus 0 1 Muricauda ruestringensis 111501 479 0 species 317 species 0 1 Muricauda lutaonensis 516051 1 1016 Capnocytophaga 15 41 genus 0 5296 2640652 6 0 no rank 2013 Capnocytophaga sp. oral taxon 323 1 1705617 268 species 0 0 species 283 209053 1 Capnocytophaga sp. ChDC OS43 1 Capnocytophaga sp. H4358 1945658 451 0 species 0 species 421 1945657 Capnocytophaga sp. H2931 1 346 0 species Capnocytophaga sp. oral taxon 878 1 1316596 1316593 Capnocytophaga sp. oral taxon 864 1 0 species 244 640 species 0 Capnocytophaga canimorsus 1 28188 28189 1 Capnocytophaga cynodegmi species 0 553 327575 1 Capnocytophaga leadbetteri 0 species 268 1 Capnocytophaga stomatis 1848904 416 species 0 261 species 0 Capnocytophaga ochracea 1 1018 1017 1 Capnocytophaga gingivalis 0 species 258 species 0 218 45243 Capnocytophaga haemolytica 1 Capnocytophaga sputigena 1 1019 628 0 species Dokdonia 4 326319 1 2252 genus 0 18 326320 Dokdonia donghaensis 1 0 species 774 no rank 0 1460 2615033 2 0 species 746 983548 Dokdonia sp. 4H-3-7-5 1 714 0 species Dokdonia sp. MED134 1 313590 3838 0 genus 30 5 Maribacter 252356 1 0 species 549 1178778 1 Maribacter cobaltidurans 0 no rank 3259 2615042 3 0 species 1214 1644130 1 Maribacter sp. 1_2014MBL_MicDiv species 0 1177 1836467 Maribacter sp. T28 1 Maribacter sp. HTCC2170 1 313603 868 species 0 1 1209327 1194 genus 0 species 0 1194 1803846 1 Flavivirga eckloniae 1831 0 genus 11 Lutibacter 2 358023 1 1820 species 0 Lutibacter profundi 1 1622118 0 genus 1963 2700084 1 1963 0 species Lutibacter sp. LPB0138 1 1850246 698 0 genus 1 178469 species 0 698 616991 1 Arenibacter algicola genus 0 525 1176327 1 1 2636237 525 no rank 0 1 Aureitalea sp. RR4-38 2094025 525 species 0 0 genus 1236 1204360 1 762954 1 Siansivirga zeaxanthinifaciens 0 species 1236 1 83612 Psychroflexus 2 1 genus 0 998 species 0 997 57029 Psychroflexus torquis 1 1 genus 0 1504 1 261827 Algibacter 2 Algibacter alginicilyticus 1 1736674 1503 0 species 2 Olleya 336276 1 1267 genus 0 1 2615019 1 no rank 0 1266 1266 0 species 1 Olleya sp. Bg11-27 2058135 393005 1 0 genus 995 995 species 0 1 Tamlana sp. UJ94 2069432 3422 0 genus 90 Nonlabens 5 363408 1 838 0 species 1 Nonlabens dokdonensis 328515 species 0 845 319236 Nonlabens sediminis 1 2615035 2 0 no rank 1649 0 species 787 2058134 1 Nonlabens sp. MB-3u-79 0 species 862 1476901 Nonlabens sp. MIC269 1 252306 1 0 genus 191 1 Robiginitalea biformata 252307 191 species 0 Wenyingzhuangia 2 1 1518147 1317 2 0 genus Wenyingzhuangia fucanilytica 1 1790137 1315 0 species 112040 1 0 genus 401 species 0 401 63186 Zobellia galactanivorans 1 genus 0 30 9652 237 1 Flavobacterium 9 312277 1 Flavobacterium indicum 0 species 1392 1763534 1 Flavobacterium crassostreae 0 species 636 1306519 Flavobacterium commune 1 species 0 796 96345 1 Flavobacterium psychrophilum species 0 964 species 0 930 1492737 Flavobacterium gilvum 1 0 species 1858 996 1 Flavobacterium columnare Flavobacterium johnsoniae 1 986 2132 0 species 0 species 914 55197 Flavobacterium branchiophilum 1 291183 1 4 Lacinutrix genus 0 34 4760 1486034 1 Lacinutrix venerupis species 0 1569 2 2647285 3157 0 no rank 1601 0 species 1 Lacinutrix sp. Bg11-31 2057808 1556 species 0 Lacinutrix sp. 5H-3-7-4 1 983544 0 genus 5 2194 225842 1 Formosa 3 no rank 0 2189 2644710 2 0 species 848 1336794 1 Formosa sp. Hel1_33_131 0 species 1341 1336795 Formosa sp. Hel3_A1_48 1 2537 genus 0 64 5 Myroides 76831 1 2642485 2 no rank 0 1183 1583100 1 Myroides sp. A21 species 0 594 589 0 species 1 Myroides sp. ZB35 1458492 76832 1 Myroides odoratimimus species 0 647 480520 Myroides profundi 1 species 0 643 0 genus 1433 1649495 1 2622645 1 no rank 0 1433 Seonamhaeicola sp. S2-3 1 1936081 1433 species 0 0 genus 1165 216431 1 1 Croceibacter atlanticus 313588 1165 0 species 3 Winogradskyella 1 286104 2942 9 0 genus 0 no rank 2933 2615021 2 species 0 1733 754409 1 Winogradskyella sp. PG-2 1936080 Winogradskyella sp. J14-2 1 0 species 1200 104267 1 Tenacibaculum 5 genus 0 11 6198 107401 1 Tenacibaculum maritimum species 0 1267 1946 species 0 1 Tenacibaculum jejuense 584609 0 species 1310 669041 1 Tenacibaculum dicentrarchi species 0 1664 1850252 Tenacibaculum todarodis 1 0 genus 1153 417127 1 Zunongwangia profunda 1 398743 1153 species 0 808 0 genus 1 143222 2633436 1 no rank 0 808 1729720 Salegentibacter sp. T436 1 species 0 808 4336 0 genus 18 Cellulophaga 4 104264 1 59600 Cellulophaga algicola 1 0 species 1428 species 0 1457 979 Cellulophaga lytica 1 1433 species 0 Cellulophaga baltica 1 76594 2 61432 1561 0 no rank Flavobacteriaceae bacterium 3519-10 1 531844 286 species 0 1275 0 species Flavobacteriaceae bacterium UJ101 1 1150389 9530 78 0 genus 6 Polaribacter 1 52959 1774273 1 Polaribacter vadi species 0 2033 species 0 2258 996801 Polaribacter reichenbachii 1 5161 0 no rank 3 196858 1 Polaribacter sp. MED152 313598 1781 0 species 1543 species 0 1 Polaribacter sp. ALD11 2058137 1529069 1 Polaribacter sp. BM10 0 species 1837 16 genus 0 2557 1 292691 Gramella 5 1913577 1 Gramella sp. LPB0144 species 0 690 0 species 424 1486245 Gramella flava 1 species 0 561 2126553 1 Gramella sp. SH35 0 species 866 411153 1 Gramella forsetii 726 0 genus 1 153265 726 0 species Aequorivita sublithincola 1 101385 Ichthyobacteriaceae 3 1 1755828 537 1 family 0 17 genus 0 536 1 1755829 Ichthyobacterium 2 242600 1 Ichthyobacterium seriolicida 0 species 519 0 family 8 4139 39782 1 Blattabacteriaceae 10 4131 31 genus 0 Blattabacterium 9 1 34098 0 species 587 1653831 Blattabacterium cuenoti 1 1 Blattabacterium punctulatus 164514 601 species 0 6 2647581 2912 0 no rank 367806 1 Blattabacterium sp. (Blatta orientalis) species 0 459 1 Blattabacterium sp. (Nauphoeta cinerea) 1316444 556 0 species 584 0 species 1 Blattabacterium sp. (Blaberus giganteus) 1186051 367488 Blattabacterium sp. (Periplaneta americana) 1 0 species 439 species 0 402 39768 1 Blattabacterium sp. (Mastotermes darwiniensis) 624186 1 Blattabacterium sp. (Blattella germanica) 0 species 472 11 0 family 1 Cryomorphaceae 246874 1853230 2 family 0 717 717 2 genus 0 Fluviicola 2 1 332102 Fluviicola taffensis 1 191579 715 0 species 1333713 2 family 0 529 16 0 genus 529 1 267986 2 Owenweeksia 513 species 0 1 Owenweeksia hongkongensis 253245 1128 0 no rank 4 313602 Candidatus Walczuchella 2 1940138 1 203 0 genus 1 1415657 1 Candidatus Walczuchella monophlebidarum 0 species 202 1 336809 Candidatus Sulcia 2 5 genus 0 925 336810 1 Candidatus Sulcia muelleri species 0 920 11699 0 family 21 2762318 1013 1 0 genus 441 441 0 species 1 Weeksella virosa 1014 495 4 genus 0 2 Ornithobacterium 1 28250 1 Ornithobacterium rhinotracheale 28251 491 species 0 Elizabethkingia 6 308865 1 4038 genus 0 31 Elizabethkingia meningoseptica 1 238 602 species 0 1756150 Elizabethkingia genomosp. 4 1 0 species 595 1 Elizabethkingia genomosp. 3 1756149 578 species 0 172045 Elizabethkingia miricola 1 species 0 841 Elizabethkingia anophelis 1 1117645 1391 0 species 1 34084 2 Riemerella 1 genus 0 1008 1 Riemerella anatipestifer 34085 1007 0 species 10 2782232 5717 no rank 0 59732 1 Chryseobacterium 9 genus 0 32 5386 558152 1 Chryseobacterium piperi species 0 680 species 0 1087 253 1 Chryseobacterium indologenes 0 no rank 1865 2593645 3 541 species 0 Chryseobacterium sp. IHB B 17019 1 1721091 583 species 0 1 Chryseobacterium sp. StRB126 878220 741 0 species 1 Chryseobacterium sp. T16E-39 2015076 1324352 Chryseobacterium gallinarum 1 species 0 444 1685010 1 Chryseobacterium glaciei 0 species 1038 1 Chryseobacterium camelliae 1265445 240 species 0 331 0 genus 1 2782228 0 species 331 536441 1 Chryseobacterium taklimakanense 2 0 order 773 1 1100069 6 Bacteroidetes Order II. Incertae sedis 563843 1 Rhodothermaceae 5 0 family 3 771 Rhodothermus 2 29548 1 251 0 genus 6 29549 Rhodothermus marinus 1 0 species 245 1 146918 230 0 genus 230 species 0 Salinibacter ruber 1 146919 1196022 1 0 no rank 287 1779382 1 Rhodothermaceae bacterium RA 0 species 287 676 0 class 1 Saprospiria 6 1937959 1 675 4 0 order Saprospirales 5 1 1936988 family 0 424 1937961 2 1 2349 Haliscomenobacter 2 3 genus 0 424 2350 Haliscomenobacter hydrossis 1 0 species 421 247 0 family 2 89374 Saprospira 2 1007 1 247 0 genus 2 245 0 species Saprospira grandis 1 1008 200643 1 Bacteroidia 61 0 class 18 10017 42 order 0 7852 1 171549 Bacteroidales 49 3 171551 281 0 family 3 Porphyromonas 1 836 281 5 0 genus 1 Porphyromonas asaccharolytica 28123 80 species 0 1 Porphyromonas gingivalis 837 196 0 species 0 family 1578 171552 10 1578 12 0 genus 10 Prevotella 1 838 0 species 111 76123 1 Prevotella enoeca 467 0 species Prevotella intermedia 1 28131 no rank 0 242 2638335 1 0 species 242 652716 Prevotella sp. oral taxon 299 1 Prevotella ruminicola 1 839 149 species 0 52227 Prevotella dentalis 1 0 species 127 1 Prevotella fusca 589436 97 species 0 1 Prevotella jejuni 1177574 153 0 species species 0 55 28129 Prevotella denticola 1 species 0 165 28132 1 Prevotella melaninogenica 0 family 407 2005523 2 genus 0 2 407 346096 1 Paludibacter 2 185300 Paludibacter propionicigenes 1 species 0 405 family 0 1935 815 10 16 genus 0 1935 1 816 10 Bacteroides 1 Bacteroides cellulosilyticus 246787 263 0 species 0 species 210 28116 1 Bacteroides ovatus 1796613 1 Bacteroides caecimuris species 0 175 290053 1 Bacteroides helcogenes species 0 158 87 0 species 1 Bacteroides zoogleoformans 28119 species 0 192 47678 Bacteroides caccae 1 817 1 Bacteroides fragilis species 0 429 268 species 0 1 Bacteroides thetaiotaomicron 818 Bacteroides heparinolyticus 1 28113 137 species 0 Tannerellaceae 6 2005525 1 609 0 family 1 Parabacteroides 3 375288 1 372 genus 0 2 1 2649774 180 no rank 0 species 0 180 2025876 Parabacteroides sp. CT06 1 1 Parabacteroides distasonis 823 190 species 0 genus 0 236 195950 2 1 2620507 105 0 no rank 1 Tannerella sp. oral taxon HOT-286 712710 105 0 species 131 species 0 1 Tannerella forsythia 28112 333046 4 no rank 0 1509 0 genus 793 511434 1 793 0 species Candidatus Azobacteroides pseudotrichonymphae 1 511435 909656 3 genus 0 716 208 0 species 1 Bacteroides vulgatus 821 273 species 0 1 Bacteroides salanitronis 376805 1 Bacteroides dorei 357276 235 0 species 766 family 0 5 2005520 111 0 genus 1 307628 1642646 Petrimonas mucosa 1 0 species 111 2 Proteiniphilum 294702 1 171 genus 0 1 170 species 0 1 Proteiniphilum saccharofermentans 1642647 1 1784836 Fermentimonas 2 5 0 genus 484 Fermentimonas caenicola 1 1562970 479 species 0 219 family 0 2 1853231 3 genus 0 219 1 283168 Odoribacter 2 0 species 216 28118 Odoribacter splanchnicus 1 161 no rank 0 1 185291 161 species 0 Bacteroidales bacterium CF 1 1400053 251 0 family 3 171550 Alistipes 2 239759 1 117 0 genus 1 species 0 116 214856 Alistipes finegoldii 1 0 genus 134 1611681 1 Mucinivorans hirudinis 1 1433126 134 species 0 0 family 94 2005519 2 2 Barnesiella 1 397864 94 1 0 genus 397865 1 Barnesiella viscericola 0 species 93 11 Marinilabiliales 1970189 1 2147 0 order 4 1 1573805 765 family 0 0 genus 765 2060722 1 species 0 765 1717717 1 Marinifilaceae bacterium SPP2 477 family 0 2 Prolixibacteraceae 3 1471398 1 Draconibacterium 2 1 1471399 475 4 genus 0 471 species 0 1 Draconibacterium orientale 1168034 family 0 1 435 1970190 1 Salinivirgaceae 3 434 genus 0 4 Salinivirga 2 1970191 1 Salinivirga cyanobacteriivorans 1 1307839 430 species 0 466 2 family 0 Marinilabiliaceae 3 1 558415 2 0 genus 464 1 1193324 Alkalitalea 2 889453 1 Alkalitalea saponilacus 0 species 462 1853228 15 0 class 2564 0 order 7 2564 1853229 1 Chitinophagales 15 14 Chitinophagaceae 1 563835 2557 34 family 0 genus 0 3 365 1769012 1 2 Arachidicoccus 1 2636138 362 0 no rank 362 0 species Arachidicoccus sp. BS20 1 1850526 genus 0 442 398041 1 species 0 442 1492898 Flavisolibacter tropicus 1 genus 0 5 492 379899 1 Niabella 3 234 species 0 1 Niabella ginsenosidivorans 1176587 Niabella soli 1 446683 253 0 species Niastella 2 354354 1 490 genus 0 1 Niastella koreensis 1 354356 489 0 species 2 0 genus 494 1 79328 3 Chitinophaga 1 Chitinophagaceae bacterium 13 2029983 230 0 species 262 0 species Chitinophaga pinensis 1 79329 Filimonas 2 649460 1 240 genus 0 1 Filimonas lacunae 1 477680 239 0 species 8 0 class 8297 1 117747 Sphingobacteriia 24 Sphingobacteriales 23 200666 1 8289 order 0 14 35 0 family 8275 1 84566 Sphingobacteriaceae 22 3 genus 0 610 1 929509 2 Solitalea 995 1 Solitalea canadensis 0 species 607 1 84567 Pedobacter 6 29 genus 0 2899 188932 1 Pedobacter cryoconitis species 0 610 Pedobacter ginsengisoli 1 363852 679 0 species no rank 0 578 2628915 1 species 0 578 1727164 1 Pedobacter sp. PACM 27299 494 0 species 1 Pedobacter steynii 430522 509 0 species 1 Pedobacter heparinus 984 Mucilaginibacter 4 1 423349 1080 3 genus 0 species 0 411 1234841 Mucilaginibacter sp. BJC16-A31 1 287 no rank 0 1 2617802 1 Mucilaginibacter sp. PAMC 26640 1300914 287 species 0 1550579 Mucilaginibacter gotjawali 1 0 species 379 84568 1 no rank 0 847 1986952 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 species 847 1649482 1 Pseudopedobacter 2 genus 0 2 674 672 0 species Pseudopedobacter saltans 1 151895 2130 13 0 genus Sphingobacterium 6 1 28453 0 species 365 1010 Sphingobacterium mizutaii 1 1752 no rank 0 4 2609468 species 0 342 743722 1 Sphingobacterium sp. 21 species 0 415 1933220 Sphingobacterium sp. B29 1 580 species 0 Sphingobacterium sp. ML3W 1 1538644 species 0 415 2003121 1 Sphingobacterium sp. G1-14 768503 1 Cytophagia 60 class 0 27 14475 14448 order 0 63 Cytophagales 59 768507 1 2401 0 family 4 Hymenobacteraceae 16 1853232 1 323449 1 Pontibacter 3 0 genus 7 430 177 species 0 1 Pontibacter akesuensis 388950 246 species 0 Pontibacter korlensis 1 400092 695 13 0 genus Rufibacter 4 1 1379908 512763 1 Rufibacter tibetensis species 0 254 2639626 2 no rank 0 428 1379909 1 Rufibacter sp. DG15C 0 species 207 0 species 221 1379910 Rufibacter sp. DG31D 1 genus 0 16 1272 89966 1 Hymenobacter 8 Hymenobacter sedentarius 1 1411621 159 0 species 2615202 5 no rank 0 906 264 0 species 1 Hymenobacter sp. PAMC 26554 1484116 species 0 111 1385664 1 Hymenobacter sp. DG25B 1385663 Hymenobacter sp. DG25A 1 species 0 93 0 species 259 1484118 1 Hymenobacter sp. PAMC 26628 species 0 179 1356852 1 Hymenobacter sp. APR13 191 species 0 Hymenobacter swuensis 1 1446467 1 89373 Cytophagaceae 16 7 0 family 2866 318 4 0 genus 2 Leadbetterella 1 319458 species 0 314 316068 Leadbetterella byssophila 1 0 genus 153 861914 1 1 2620963 153 0 no rank 1834519 Fibrella sp. ES10-3-2-2 1 0 species 153 1 105 2 Runella 1 0 genus 582 106 1 Runella slithyformis 0 species 581 1023 9 0 genus Spirosoma 6 1 107 Spirosoma sp. HA7 1 2057025 267 0 species 1 Spirosoma radiotolerans 1379870 179 species 0 1178516 Spirosoma montaniterrae 1 species 0 170 146 0 species 1 Spirosoma rigui 564064 Spirosoma aerolatum 1 1211326 252 species 0 241 2 0 genus 2 Dyadobacter 1 120831 239 0 species 1 Dyadobacter fermentans 94254 0 genus 7 542 978 1 2 Cytophaga 535 0 species Cytophaga hutchinsonii 1 985 1501348 1 Amoebophilaceae 4 0 family 8 527 203 1 0 genus Candidatus Cardinium 2 1 273135 202 no rank 0 1 2641185 species 0 202 249402 Cardinium endosymbiont of Encarsia pergandiella 1 genus 0 316 281119 1 1 Candidatus Amoebophilus asiaticus 281120 316 0 species 12 0 family 2921 1 563798 Cyclobacteriaceae 10 448 2 0 genus Algoriphagus 2 1 246875 446 species 0 1 Algoriphagus sp. M8-2 1727163 0 genus 9 801 232244 1 2 Belliella 232259 Belliella baltica 1 0 species 792 genus 0 13 1349 68288 1 Cyclobacterium 3 0 species 705 320787 1 Cyclobacterium amurskyense 631 0 species 1 Cyclobacterium marinum 104 15 genus 0 311 1 390846 Echinicola 2 390884 Echinicola vietnamensis 1 0 species 296 Persicobacteraceae 3 1 1853234 561 3 family 0 Persicobacter 2 1 59740 558 1 genus 0 1 2664020 557 no rank 0 1085624 Persicobacter sp. JZB09 1 species 0 557 Bernardetiaceae 3 1937968 1 1381 0 family 2 0 genus 12 1379 1937972 1 Bernardetia 2 999 1 Bernardetia litoralis 0 species 1367 2810 family 0 4 Flammeovirgaceae 4 200667 1 Flammeovirga 2 59739 1 1183 0 genus 7 1176 no rank 0 1 2637820 0 species 1176 1191459 1 Flammeovirga sp. MY04 1 340671 1623 no rank 0 Flammeovirgaceae bacterium 311 1 1257021 1623 species 0 2762301 2 family 0 918 0 genus 12 918 869806 1 Marivirga 2 species 0 906 1006 Marivirga tractuosa 1 2234 0 phylum 22 1090 Chlorobia 22 191410 1 2234 class 0 10 191411 1 Chlorobiales 21 0 order 15 2224 Chlorobiaceae 20 1 191412 2209 15 family 0 237 0 genus 1 2 Chloroherpeton 100715 1 Chloroherpeton thalassium 1 100716 236 0 species 1 256319 Chlorobaculum 4 52 0 genus 313 0 species 88 274537 1 Chlorobaculum limnaeum 1 Chlorobaculum parvum 274539 85 0 species Chlorobaculum tepidum 1 1097 88 0 species 0 genus 30 482 1101 1 Prosthecochloris 5 3 2632826 314 0 no rank 114 0 species 1 Prosthecochloris sp. GSB1 281093 species 0 108 1974213 Prosthecochloris sp. HL-130-GSB 1 92 species 0 Prosthecochloris sp. CIB 2401 1 1868325 1 Prosthecochloris aestuarii 1102 138 species 0 0 no rank 1162 274493 8 278 genus 0 2 Pelodictyon 3 1099 1 90 species 0 1 Pelodictyon luteolum 1100 1 Pelodictyon phaeoclathratiforme 34090 186 0 species 1 1091 Chlorobium 5 39 genus 0 884 Chlorobium limicola 1 1092 162 species 0 1094 1 Chlorobium phaeovibrioides 0 species 96 372 0 species 1 Chlorobium phaeobacteroides 1096 1 Chlorobium chlorochromatii 337090 215 species 0 phylum 0 357 456828 1 357 0 genus 1 456826 456827 Candidatus Cloacimonas acidaminovorans 1 0 species 357 7 142182 773 0 phylum 219685 1 7 Gemmatimonadetes class 0 3 773 0 order 10 770 219686 1 6 Gemmatimonadales 0 family 6 760 219687 1 Gemmatimonadaceae 5 454 genus 0 1 1706036 0 species 454 861299 Gemmatirosa kalamazoonesis 1 genus 0 2 300 173479 1 3 Gemmatimonas Gemmatimonas phototrophica 1 1379270 154 0 species 173480 Gemmatimonas aurantiaca 1 species 0 144 537 no rank 0 3 2323 1783234 3 clade 0 537 95901 2 clade 0 471 2497643 2 class 0 471 471 0 order 2 2497644 2 2497645 471 0 family 471 0 genus 8 Candidatus Babela 2 1551504 1 0 species 463 673862 1 Candidatus Babela massiliensis 66 0 phylum 1 95818 66 0 no rank 1 1895827 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 2056494 66 0 species 508458 10 phylum 0 459 649775 10 class 0 459 1 649776 Synergistales 10 2 order 0 459 457 2 family 0 Synergistaceae 9 1 649777 79 genus 0 1 49894 Acetomicrobium mobile 1 97477 79 0 species 81461 1 Thermanaerovibrio 2 genus 0 1 62 61 0 species Thermanaerovibrio acidaminovorans 1 81462 1 81466 Aminobacterium 2 1 0 genus 121 120 0 species 1 Aminobacterium colombiense 81468 83 2 genus 0 2 Cloacibacillus 1 508459 1197717 Cloacibacillus porcorum 1 0 species 81 110 0 genus 1 336260 Thermovirga lienii 1 336261 110 species 0 4323 0 phylum 24 200783 4323 class 0 11 Aquificae 24 187857 1 Aquificales 20 32069 1 3636 order 0 8 1709 0 family 2 Aquificaceae 11 64898 1 0 genus 98 2713 1 98 0 species 1 Aquifex aeolicus 63363 2 75905 140 genus 0 75906 Thermocrinis ruber 1 0 species 79 136094 Thermocrinis albus 1 species 0 61 168657 1 6 Hydrogenobaculum genus 0 55 1371 5 2622382 1316 no rank 0 Hydrogenobaculum sp. Y04AAS1 1 380749 240 0 species Hydrogenobaculum sp. SHO 1 547145 269 0 species 0 species 269 547146 Hydrogenobaculum sp. SN 1 1 Hydrogenobaculum sp. HO 547144 269 species 0 269 species 0 1 Hydrogenobaculum sp. 3684 547143 939 1 genus 0 98 1 Hydrogenobacter thermophilus 940 98 0 species 1 family 0 1761 1 224027 Hydrogenothermaceae 6 genus 0 15 1393 212790 1 3 Sulfurihydrogenibium species 0 598 309806 Sulfurihydrogenibium azorense 1 780 0 no rank 1 2619248 1 Sulfurihydrogenibium sp. YO3AOP1 436114 780 species 0 367 0 genus 1 2 Persephonella 182899 1 309805 Persephonella marina 1 0 species 366 90150 2 0 no rank 158 158 0 genus 2 Thermosulfidibacter 2 412592 1 species 0 156 412593 Thermosulfidibacter takaii 1 1485951 3 0 order 676 676 0 family 2 Desulfurobacteriaceae 3 558314 1 0 genus 76 171868 1 76 species 0 Thermovibrio ammonificans 1 228745 598 0 genus 1 64159 species 0 598 64160 Desulfurobacterium thermolithotrophum 1 3 200938 158 phylum 0 158 0 class 3 118001 189769 3 0 order 158 3 Chrysiogenaceae 1 189770 158 3 family 0 4 genus 0 155 1 393029 Desulfurispirillum 2 936456 Desulfurispirillum indicum 1 species 0 151 57723 19 0 phylum 1390 1 class 0 115 1 1562566 Blastocatellia 3 1 genus 0 114 1 458032 2 Chloracidobacterium 458033 1 Chloracidobacterium thermophilum 0 species 113 1275 class 0 6 Acidobacteriia 16 204432 1 238 6 0 order 4 Solibacterales 1 332160 3 Solibacteraceae 332161 1 232 family 0 1 231 genus 0 8 Candidatus Solibacter 2 332162 1 223 species 0 Candidatus Solibacter usitatus 1 332163 1031 0 order 7 Acidobacteriales 11 204433 1 1 204434 Acidobacteriaceae 10 8 0 family 1024 1 33973 Acidobacterium 2 4 genus 0 220 1 Acidobacterium capsulatum 33075 216 species 0 345 0 genus 2 940557 206 species 0 1 Granulicella tundricola 940615 Granulicella mallensis 1 940614 139 0 species 1 658061 2 Candidatus Koribacter 8 genus 0 147 Candidatus Koribacter versatilis 1 658062 139 0 species Terriglobus 3 1 392733 304 3 genus 0 175 0 species Terriglobus saanensis 1 870903 392734 Terriglobus roseus 1 0 species 126 0 clade 291 2498710 4 67814 4 0 phylum 291 291 class 0 3 Caldisericia 4 693071 1 693072 1 Caldisericales 3 0 order 1 288 0 family 1 287 693073 1 2 Caldisericaceae 693074 1 0 genus 286 693075 1 Caldisericum exile species 0 286 3 phylum 0 999 1 74152 9 Elusimicrobia 4 Endomicrobia 447830 1 538 class 0 2 536 0 order 3 1783344 Endomicrobiaceae 3 1 1783343 536 1 family 0 0 genus 535 1408194 2 0 species 281 1408281 Endomicrobium proavitum 1 Candidatus Endomicrobium trichonymphae 1 1408204 254 0 species Elusimicrobia 3 1 641853 179 1 class 0 0 order 178 641854 2 178 0 family 2 641876 1 423604 2 Elusimicrobium 2 0 genus 178 0 species 176 423605 Elusimicrobium minutum 1 0 no rank 279 99260 1 279 0 species 1 uncultured Termite group 1 bacterium 167965 23 32066 19939 0 phylum 19939 class 0 36 Fusobacteriia 23 203490 1 order 0 33 19903 203491 1 Fusobacteriales 22 15350 13 0 family 11 Fusobacteriaceae 1 203492 167639 1 0 genus 555 species 0 555 167642 Ilyobacter polytropus 1 1 848 9 Fusobacterium 79 genus 0 14782 837 species 0 Fusobacterium mortiferum 1 850 3016 species 0 1 Fusobacterium periodonticum 860 861 Fusobacterium ulcerans 1 species 0 913 851 Fusobacterium nucleatum 1 species 0 5706 species 0 304 859 1 Fusobacterium necrophorum 1799 0 species 1 Fusobacterium varium 856 0 species 501 849 1 Fusobacterium gonidiaformans Fusobacterium hwasookii 1 1583098 1627 0 species 0 family 11 4520 1129771 1 Leptotrichiaceae 10 3 genus 0 506 1 168808 Sneathia 2 503 species 0 Sneathia amnii 1 187101 842 0 genus 1 34104 34105 Streptobacillus moniliformis 1 species 0 842 Leptotrichia 5 32067 1 2631 genus 0 14 1 Leptotrichia buccalis 40542 681 species 0 3 2633022 1936 no rank 0 650 species 0 Leptotrichia sp. oral taxon 498 1 712368 1 Leptotrichia sp. oral taxon 847 1785996 712 0 species species 0 574 712357 Leptotrichia sp. oral taxon 212 1 1 32068 530 genus 0 826 1 Sebaldella termitidis 0 species 530 0 phylum 1752 200940 8 1752 2 0 class 8 Thermodesulfobacteria 1 67799 1750 4 0 order Thermodesulfobacteriales 7 1 188710 1 188711 Thermodesulfobacteriaceae 6 8 0 family 1746 1273 1 0 genus 3 Thermodesulfobacterium 1 1740 1295609 1 Thermodesulfobacterium geofontis species 0 940 1 Thermodesulfobacterium commune 1741 332 species 0 1 241192 216 0 genus 216 species 0 Thermodesulfatator indicus 1 171695 444090 1 0 genus 249 1653476 1 Caldimicrobium thiodismutans 0 species 249 phylum 0 7512 200918 44 26 class 0 7512 1 188708 Thermotogae 44 3 order 0 465 1 1643946 Kosmotogales 7 462 family 0 1 6 Kosmotogaceae 1643948 1 125 7 genus 0 Mesotoga 2 1 1184396 118 0 species Mesotoga prima 1 1184387 3 Kosmotoga 651456 1 336 genus 0 4 651457 1 Kosmotoga olearia species 0 149 Kosmotoga pacifica 1 1330330 183 0 species 28 Thermotogales 1 2419 4414 14 order 0 2845 12 0 family Fervidobacteriaceae 10 1 1643950 2422 1 Fervidobacterium 4 genus 0 5 790 1 Fervidobacterium pennivorans 93466 327 0 species 0 species 122 2423 Fervidobacterium islandicum 1 Fervidobacterium nodosum 1 2424 336 species 0 5 Thermosipho 1 2420 2043 15 genus 0 2676525 2 no rank 0 836 species 0 434 1437364 Thermosipho sp. 1070 1 402 species 0 1 Thermosipho sp. 1063 1462747 species 0 629 2421 Thermosipho africanus 1 1 Thermosipho melanesiensis 46541 563 0 species 1555 5 family 0 17 Thermotogaceae 1 188709 750 0 genus 10 5 Pseudothermotoga 1643951 1 species 0 261 177758 1 Pseudothermotoga lettingae 174 0 species Pseudothermotoga thermarum 1 119394 57487 1 Pseudothermotoga hypogea 0 species 38 267 species 0 1 Pseudothermotoga elfii 38322 800 genus 0 18 Thermotoga 11 2335 1 4 2631113 265 no rank 0 73 0 species 1 Thermotoga sp. RQ2 126740 1 Thermotoga sp. 2812B 1157948 70 0 species 64 0 species 1 Thermotoga sp. RQ7 126738 1157947 Thermotoga sp. Cell2 1 species 0 58 0 species 229 1508420 1 Thermotoga profunda 0 species 71 2336 Thermotoga maritima 1 52 0 species 1 Thermotoga petrophila 93929 0 species 74 2337 1 Thermotoga neapolitana 59 species 0 Thermotoga naphthophila 1 93930 1 Thermotoga caldifontis 1508419 32 0 species 9 0 order 2607 1 1643947 Petrotogales 8 1643949 7 family 0 2598 1 28236 Petrotoga 2 1 genus 0 418 0 species 417 69499 Petrotoga mobilis 1 640 1 genus 0 Defluviitoga 2 1 1511648 1 Defluviitoga tunisiensis 1006576 639 0 species 1 160798 Marinitoga 3 12 0 genus 1540 Marinitoga piezophila 1 149715 789 species 0 1 2640159 739 0 no rank 0 species 739 1545835 Marinitoga sp. 1137 1 2004 Proteobacteria 1224 1 753684 phylum 0 165 1 28211 Alphaproteobacteria 560 178 class 0 274353 0 order 70 14807 204457 1 81 Sphingomonadales 0 family 145 11484 41297 1 Sphingomonadaceae 58 1 541 Zymomonas 2 2 genus 0 661 542 1 Zymomonas mobilis 0 species 659 3 Sphingorhabdus 1434046 1 500 0 genus 19 481 no rank 0 2 2614947 250 0 species 1 Sphingorhabdus sp. M41 1806885 0 species 231 2077182 Sphingorhabdus sp. YGSMI21 1 183 0 genus 1 2685927 1 Sphingomonas sp. JJ-A5 1921510 183 species 0 165696 1 Novosphingobium 5 0 genus 28 807 212 species 0 1 Novosphingobium resinovorum 158500 1 2644732 231 no rank 0 702113 1 Novosphingobium sp. PP1Y 0 species 231 205844 1 Novosphingobium pentaromativorans species 0 207 48935 1 Novosphingobium aromaticivorans species 0 129 Sphingobium 15 1 165695 2396 106 0 genus 120107 1 Sphingobium cloacae species 0 135 332056 1 Sphingobium japonicum species 0 164 0 species 135 46429 Sphingobium chlorophenolicum 1 no rank 0 1027 2611147 6 1843368 1 Sphingobium sp. RAC03 species 0 180 Sphingobium sp. SYK-6 1 627192 183 0 species 157 0 species Sphingobium sp. EP60837 1 1855519 407020 1 Sphingobium sp. MI1205 species 0 173 161 0 species Sphingobium sp. YBL2 1 484429 173 species 0 Sphingobium sp. TKS 1 1315974 13690 1 Sphingobium yanoikuyae 0 species 238 169 0 species 1 Sphingobium hydrophobicum 1673076 species 0 127 1332080 1 Sphingobium baderi 76947 1 Sphingobium herbicidovorans 0 species 152 0 species 143 332055 Sphingobium indicum 1 1 2709685 201 0 genus species 0 201 266812 1 Sphingorhabdus flavimaris 0 genus 3 249 150203 1 2 Blastomonas 246 no rank 0 1 2626550 species 0 246 1842535 Blastomonas sp. RAC04 1 1 13687 Sphingomonas 15 91 genus 0 3870 1826 0 no rank 6 196159 species 0 217 1327635 Sphingomonas sp. Cra20 1 0 species 179 1961362 1 Sphingomonas sp. NIC1 852 0 species Sphingomonas sp. LK11 1 1390395 species 0 162 1938607 1 Sphingomonas sp. LM7 212 0 species 1 Sphingomonas sp. KC8 1030157 Sphingomonas sp. MM-1 1 745310 204 0 species 212 0 species 1 Sphingomonas hengshuiensis 1609977 1560345 1 Sphingomonas panacis species 0 208 349 species 0 673 1 160791 Sphingomonas wittichii 2 1283312 1 Sphingomonas sp. DC-6 0 strain 324 1 Sphingomonas taxi 1549858 182 0 species 199 0 species 1 Sphingomonas melonis 152682 209 species 0 Sphingomonas koreensis 1 93064 0 species 270 397260 Sphingomonas sanxanigenens 1 165697 1 Sphingopyxis 10 genus 0 50 2070 1 Sphingopyxis granuli 267128 152 species 0 Sphingopyxis terrae 1 33052 181 species 0 173 0 species Sphingopyxis fribergensis 1 1515612 1 Sphingopyxis macrogoltabida 33050 324 species 0 species 0 159 117207 Sphingopyxis alaskensis 1 2614943 4 0 no rank 1031 1 Sphingopyxis sp. LPB0140 1913578 465 species 0 species 0 151 292913 Sphingopyxis sp. 113P3 1 187 0 species Sphingopyxis sp. MG 1 1866325 0 species 228 1357916 1 Sphingopyxis sp. QXT-31 1649486 1 0 genus 258 1 Rhizorhabdus dicambivorans 1850238 258 0 species 0 genus 1 144 72173 1 2 Citromicrobium 143 0 no rank 1 2630544 0 species 143 1634516 Citromicrobium sp. JL477 1 335929 1 22 Erythrobacteraceae family 0 42 3253 1 2800685 137 genus 0 Altererythrobacter marensis 1 543877 137 species 0 2800681 2 0 genus 685 1 Erythrobacter atlanticus 1648404 360 0 species 325 species 0 1 Erythrobacter gangjinensis 502682 2800682 1 genus 0 255 645517 1 Altererythrobacter namhicola species 0 255 genus 0 238 2800686 2 1982042 Altererythrobacter mangrovi 1 0 species 115 species 0 123 692370 1 Altererythrobacter dongtanensis 1 361177 Altererythrobacter 4 70 genus 0 487 0 species 140 1267766 1 Altererythrobacter atlanticus 0 species 127 476157 1 Altererythrobacter ishigakiensis Altererythrobacter epoxidivorans 1 361183 150 0 species 6 2800788 879 0 no rank 71 0 genus 515 1 1041 3 Erythrobacter Porphyrobacter neustonensis 1 1112 127 species 0 1 Erythrobacter litoralis 39960 317 0 species 1111 1 Porphyrobacter 3 0 genus 32 364 2683265 2 no rank 0 332 168 species 0 Porphyrobacter sp. LM 6 1 1896196 0 species 164 2023229 Porphyrobacter HT-58-2 1 1295327 1 3 Croceicoccus 0 genus 11 296 1 Croceicoccus naphthovorans 1348774 109 0 species 176 0 species Croceicoccus marinus 1 450378 1855416 2 genus 0 234 species 0 111 266951 Erythrobacter seohaensis 1 123 0 species 1 Erythrobacter flavus 192812 15051 95 0 order Rhodospirillales 65 1 204441 41295 1 Rhodospirillaceae 31 family 0 137 9327 1559 0 genus 63 5 Magnetospirillum 13134 1 1 Magnetospirillum gryphiswaldense 55518 464 species 0 705 no rank 0 2 2617991 species 0 332 1663591 1 Magnetospirillum sp. XM-1 0 species 373 1639348 Magnetospirillum sp. ME-1 1 327 species 0 Magnetospirillum magneticum 1 84159 2034 genus 0 59 Azospirillum 5 191 1 626 0 species Azospirillum brasilense 1 192 528244 Azospirillum thiophilum 1 0 species 435 0 species 681 193 Azospirillum lipoferum 1 species 0 233 1226968 1 Azospirillum humicireducens 2 Candidatus Endolissoclinum 1 1263978 1728 1 genus 0 0 species 1727 1263979 Candidatus Endolissoclinum faulkneri 1 2 Pararhodospirillum 1 1612157 255 3 0 genus 1084 Pararhodospirillum photometricum 1 0 species 252 300 5 0 genus 2 Niveispirillum 1 1543704 1612173 1 Niveispirillum cyanobacteriorum species 0 295 285 1 0 genus Haematospirillum 2 1 1804663 284 species 0 1 Haematospirillum jordaniae 1549855 5 genus 0 394 1 1182780 Magnetospira 2 2685734 1 0 no rank 389 species 0 389 1288970 Magnetospira sp. QH-2 1 6 0 genus 509 1 171436 2 Tistrella 171437 Tistrella mobilis 1 0 species 503 1081 1 Rhodospirillum 3 0 genus 8 715 331 species 0 Rhodospirillum rubrum 1 1085 Rhodospirillum centenum 1 34018 376 species 0 3 Thalassospira 168934 1 989 genus 0 24 species 0 498 2048283 1 Thalassospira sp. CSC3H3 1 Thalassospira xiamenensis 220697 467 species 0 422 2 0 genus Nitrospirillum 2 1 1543705 0 species 420 28077 Nitrospirillum amazonense 1 433 1 Acetobacteraceae 33 0 family 57 5629 5 Komagataeibacter 1 1434011 829 26 genus 0 265 species 0 1 Komagataeibacter xylinus 28448 33995 Komagataeibacter europaeus 1 species 0 130 226 species 0 1 Komagataeibacter nataicola 265960 species 0 182 1177712 1 Komagataeibacter medellinensis Asaia 2 91914 1 136 genus 0 4 0 species 132 91915 Asaia bogorensis 1 0 genus 7 330 441 1 Gluconobacter 3 97 species 0 1 Gluconobacter albidus 318683 species 0 226 442 Gluconobacter oxydans 1 31 genus 0 1977 1 434 Acetobacter 8 0 species 245 104102 1 Acetobacter tropicalis 446692 1 Acetobacter senegalensis 0 species 159 Acetobacter pomorum 1 65959 190 0 species 822 species 0 Acetobacter pasteurianus 1 438 1076596 1 Acetobacter persici 0 species 194 1633874 Acetobacter oryzifermentans 1 0 species 208 151157 1 subgenus 0 128 128 0 species Acetobacter aceti 1 435 153497 1 0 genus 186 186 0 species Kozakia baliensis 1 153496 genus 0 3 147 320496 1 2 Neoasaia 320497 1 Neoasaia chiangmaiensis 0 species 144 1 1602345 129 0 genus 1510841 Parasaccharibacter apium 1 0 species 129 16 0 genus 669 1 125216 3 Roseomonas 257708 1 Roseomonas gilardii species 0 316 no rank 0 337 2617492 1 0 species 337 2018065 Roseomonas sp. FDAARGOS_362 1 522 1 Acidiphilium 3 genus 0 21 527 1 Acidiphilium multivorum 62140 254 species 0 524 Acidiphilium cryptum 1 0 species 252 416 4 0 genus Granulibacter 2 1 364409 species 0 412 364410 1 Granulibacter bethesdensis Gluconacetobacter 2 89583 1 226 genus 0 9 217 species 0 1 Gluconacetobacter diazotrophicus 33996 0 order 298 54605 356 1 Rhizobiales 210 1 2036754 Chelatococcaceae 4 2 0 family 670 28209 1 Chelatococcus 3 genus 0 29 668 444444 1 Chelatococcus daeguensis species 0 304 2638111 1 0 no rank 335 1 Chelatococcus sp. CO-6 1702325 335 species 0 Methylocystaceae 6 31993 1 747 family 0 14 1 425 Methylosinus 2 10 genus 0 289 species 0 279 426 Methylosinus trichosporium 1 444 genus 0 28 3 Methylocystis 133 1 species 0 220 655015 1 Methylocystis bryophila 2625913 1 0 no rank 196 1 Methylocystis sp. SC2 187303 196 0 species 4248 family 0 28 Phyllobacteriaceae 20 69277 1 8 0 genus 321 1 245876 2 Nitratireductor 472175 1 Nitratireductor basaltis species 0 313 376 10 genus 0 2 Hoeflea 1 274591 1 2614931 366 no rank 0 1620421 Hoeflea sp. IMCC20628 1 0 species 366 12 0 genus 208 1 449972 2 Chelativorans 196 no rank 0 1 2643807 species 0 196 266779 Chelativorans sp. BNC1 1 1 68287 9 Mesorhizobium 116 0 genus 2788 418 0 no rank 1 325217 Mesorhizobium sp. WSM1497 1 278153 418 0 species 1670800 Mesorhizobium sp. B7 1 0 species 317 297 0 species Mesorhizobium loti 1 381 2066070 1 Mesorhizobium japonicum 0 species 274 39645 1 Mesorhizobium ciceri species 0 472 0 species 318 536018 1 Mesorhizobium australicum 593909 1 Mesorhizobium opportunistum species 0 296 1 Mesorhizobium amorphae 71433 280 0 species 2 Phyllobacterium 28100 1 243 genus 0 2 1867719 1 Phyllobacterium zundukense 0 species 241 1 31988 Aminobacter 2 2 genus 0 284 species 0 282 83263 Aminobacter aminovorans 1 3157 32 family 0 Hyphomicrobiaceae 19 1 45401 genus 0 7 322 29407 1 Rhodoplanes 2 1 2619116 315 no rank 0 Rhodoplanes sp. Z2-YC6860 1 674703 315 species 0 genus 0 54 840 81 1 Hyphomicrobium 4 1 2619925 295 0 no rank 295 species 0 Hyphomicrobium sp. MC1 1 717785 species 0 177 1427356 Hyphomicrobium nitrativorans 1 1 Hyphomicrobium denitrificans 53399 314 species 0 59282 1 Blastochloris 2 genus 0 8 267 1 Blastochloris viridis 1079 259 species 0 274 0 genus 10 Filomicrobium 2 119044 1 0 species 264 1608628 Candidatus Filomicrobium marinum 1 2 Pelagibacterium 1 1082930 224 7 0 genus 217 species 0 1 Pelagibacterium halotolerans 531813 Rhodomicrobium 2 1 1068 215 9 genus 0 Rhodomicrobium vannielii 1 1069 206 0 species 46913 1 4 Devosia genus 0 44 983 939 no rank 0 3 196773 Devosia sp. I507 1 2083786 284 0 species species 0 288 1643450 1 Devosia sp. H5989 1736675 1 Devosia sp. A16 0 species 367 900 0 no rank 6 119042 341 8 genus 0 Hartmannibacter 2 1 1572860 1482074 1 Hartmannibacter diazotrophicus species 0 333 1484898 1 Methyloceanibacter 2 genus 0 16 300 species 0 284 1384459 1 Methyloceanibacter caenitepidi 0 genus 10 259 1734920 1 2 Pseudorhodoplanes 1235591 Pseudorhodoplanes sinuspersici 1 0 species 249 2173 0 family 5 Brucellaceae 20 118882 1 909 genus 0 272 Brucella 14 234 1 0 species 52 120576 Brucella pinnipedialis 1 Brucella vulpis 1 981386 63 0 species species 0 50 120577 Brucella ceti 1 Brucella microti 1 444163 20 species 0 Brucella melitensis 1 29459 28 0 species 1 Brucella suis 29461 89 species 0 Brucella abortus 1 235 29 0 species 13 0 species Brucella ovis 1 236 36855 Brucella canis 1 0 species 48 no rank 0 245 2632610 4 species 0 74 1149952 Brucella sp. 09RB8471 1 65 species 0 Brucella sp. 141012304 1 1885919 Brucella sp. 09RB8910 1 1844051 84 0 species 1891098 Brucella sp. 2002734562 1 species 0 22 1 528 5 Ochrobactrum 26 0 genus 1259 260 species 0 Ochrobactrum sp. A44 1 271865 1 Ochrobactrum pseudogrignonense 419475 365 0 species 210 species 0 1 Ochrobactrum anthropi 529 1 Ochrobactrum pituitosum 571256 398 species 0 family 0 14 4034 119045 1 Methylobacteriaceae 15 3 2282523 1586 genus 0 1 Methylobacterium extorquens 408 1009 0 species 0 species 381 223967 Methylobacterium populi 1 29429 Methylobacterium zatmanii 1 species 0 196 407 1 Methylobacterium 9 0 genus 105 2179 780 no rank 0 3 2615210 426117 Methylobacterium sp. 4-46 1 0 species 320 species 0 208 925818 Methylobacterium sp. AMS5 1 1479019 Methylobacterium sp. C1 1 0 species 252 species 0 210 418223 1 Methylobacterium phyllosphaerae 325 0 species Methylobacterium nodulans 1 114616 0 species 281 270351 1 Methylobacterium aquaticum 1 Methylobacterium radiotolerans 31998 269 0 species 1 Methylobacterium oryzae 334852 209 species 0 186650 1 2 Microvirga 0 genus 9 255 Microvirga ossetica 1 1882682 246 0 species 0 family 4 435 119043 1 Rhodobiaceae 3 2 Parvibaculum 1 256616 431 20 genus 0 411 0 species Parvibaculum lavamentivorans 1 256618 Bradyrhizobiaceae 26 41294 1 7285 family 0 51 3 Nitrobacter 911 1 386 genus 0 14 151 species 0 Nitrobacter winogradskyi 1 913 221 0 species Nitrobacter hamburgensis 1 912 1150 genus 0 36 5 Bosea 85413 1 822 0 no rank 3 2653178 292 0 species 1 Bosea sp. AS-1 2015316 227 0 species 1 Bosea sp. PAMC 26642 1792307 303 species 0 1 Bosea sp. RAC05 1842539 species 0 292 1526658 Bosea vaviloviae 1 26 genus 0 1713 1 1073 Rhodopseudomonas 2 1 Rhodopseudomonas palustris 1076 1687 species 0 1 40136 2 Oligotropha 6 0 genus 209 203 species 0 Oligotropha carboxidovorans 1 40137 Bradyrhizobium 11 374 1 3550 0 genus 129 476 species 0 1 Bradyrhizobium diazoefficiens 1355477 6 2631580 1888 no rank 0 Bradyrhizobium sp. CCGE-LA001 1 1223566 318 0 species 288000 1 Bradyrhizobium sp. BTAi1 species 0 300 344 0 species 1 Bradyrhizobium sp. ORS 278 114615 1 Bradyrhizobium sp. SK17 2057741 366 0 species Bradyrhizobium sp. 1 376 287 species 0 Bradyrhizobium sp. ORS 285 1 115808 273 species 0 44255 Bradyrhizobium oligotrophicum 1 0 species 313 0 species 250 1274631 1 Bradyrhizobium icense 494 species 0 Bradyrhizobium japonicum 1 375 4 genus 0 226 1 1649510 2 Variibacter 1333996 1 Variibacter gotjawalensis 0 species 222 616 family 0 5 Beijerinckiaceae 5 45404 1 genus 0 9 365 532 1 Beijerinckia 2 0 species 356 533 Beijerinckia indica 1 246 0 genus 5 2 Methylocella 120652 1 199596 1 Methylocella silvestris 0 species 241 916 9 0 family Xanthobacteraceae 7 1 335928 320 14 genus 0 2 Xanthobacter 1 279 species 0 306 280 1 Xanthobacter autotrophicus Starkeya 2 152053 1 328 genus 0 8 921 Starkeya novella 1 0 species 320 2 Azorhizobium 1 6 259 7 0 genus 7 Azorhizobium caulinodans 1 0 species 252 14373 0 family 102 Rhizobiaceae 53 82115 1 3696 genus 0 30 6 Liberibacter 34019 1 640 0 species 1 Candidatus Liberibacter solanacearum 556287 1025 species 0 1 Liberibacter crescens 1273132 Candidatus Liberibacter africanus 1 34020 630 species 0 34021 Candidatus Liberibacter asiaticus 1 0 species 627 309868 1 Candidatus Liberibacter americanus 0 species 744 Shinella 2 1 323620 347 1 0 genus 346 0 no rank 1 2643062 0 species 346 879274 1 Shinella sp. HZN7 7605 0 no rank 34 227290 7 Agrobacterium 1 357 2062 39 genus 0 1 Agrobacterium vitis 373 229 species 0 2 2632611 427 no rank 0 Agrobacterium sp. H13-3 1 861208 191 0 species 236 0 species 1 Agrobacterium sp. RAC06 1842536 species 0 190 359 Agrobacterium rhizogenes 1 1183400 2 0 species group 1177 Agrobacterium fabrum 1 1176649 164 species 0 0 species 1013 358 1 Agrobacterium tumefaciens 1 1525371 Neorhizobium 2 3 genus 0 339 336 0 species 1 Neorhizobium galegae 399 25 Rhizobium 379 1 5204 genus 0 330 314 species 0 Rhizobium gallicum 1 56730 0 species 569 29449 Rhizobium etli 1 Rhizobium phaseoli 1 396 422 species 0 2166 no rank 0 19 2613769 Rhizobium sp. Y9 1 1914541 166 species 0 194 species 0 1 Rhizobium sp. ACO-34A 1571470 Rhizobium sp. NXC14 1 1981173 123 species 0 1703966 1 Rhizobium sp. N731 species 0 28 0 species 3 1703962 Rhizobium sp. N1341 1 species 0 208 2048897 Rhizobium sp. NXC24 1 181 0 species Rhizobium sp. IRBG74 1 424182 1 Rhizobium sp. N6212 1703965 1 species 0 species 0 142 2020311 Rhizobium sp. Kim5 1 191 0 species 1 Rhizobium sp. 10195 2028343 species 0 28 1703961 Rhizobium sp. N1314 1 1869170 1 Rhizobium sp. S41 species 0 188 Rhizobium sp. TAL182 1 2020313 50 0 species 1125847 1 Rhizobium sp. NT-26 0 species 177 1 Rhizobium sp. N621 1703964 1 species 0 159 0 species 1 Rhizobium sp. N324 1703969 1703960 1 Rhizobium sp. N113 species 0 3 2020312 Rhizobium sp. CIAT894 1 0 species 160 163 0 species Rhizobium sp. IE4771 1 1301032 1211 0 species 1 Rhizobium leguminosarum 384 398 Rhizobium tropici 1 0 species 192 10 227292 2623 0 no rank 106591 1 3 Ensifer 0 genus 8 448 205 0 species 1 Ensifer sojae 716925 235 0 species Ensifer adhaerens 1 106592 0 genus 49 2175 28105 1 Sinorhizobium 7 2613772 2 0 no rank 470 species 0 216 794846 Sinorhizobium sp. CCBAU 05631 1 0 species 254 1842534 1 Sinorhizobium sp. RAC02 1 Sinorhizobium americanum 194963 260 0 species 1 Sinorhizobium meliloti 382 511 0 species 1 663276 658 species group 0 species 0 658 380 1 Sinorhizobium fredii 1 Sinorhizobium medicae 110321 227 0 species 957 0 family 7 7 Aurantimonadaceae 255475 1 1 293088 4 Martelella 29 0 genus 718 259 species 0 Martelella mediterranea 1 293089 0 no rank 260 2629616 1 686597 Martelella sp. AD-3 1 species 0 260 1 Martelella endophytica 1486262 170 species 0 4 genus 0 232 1 414371 2 Aureimonas 1 2615206 228 0 no rank species 0 228 1349819 Aureimonas sp. AU20 1 13796 family 0 18 18 Bartonellaceae 772 1 773 1 Bartonella 17 0 genus 294 13778 56426 Bartonella clarridgeiae 1 0 species 937 species 0 739 33047 Bartonella vinsonii 1 0 species 820 85701 1 Bartonella tribocorum 796 species 0 1 Bartonella henselae 38323 851 0 species 1 Bartonella bacilliformis 774 1 Bartonella quintana 803 762 species 0 1318743 1 Bartonella ancashensis 0 species 780 388640 1 Bartonella australis 0 species 471 0 species 805 33045 1 Bartonella grahamii 1 Bartonella apis 1686310 703 0 species 6 2645622 5820 no rank 0 species 0 917 515256 Bartonella sp. 1-1C 1 1933904 1 Bartonella sp. WD16.2 0 species 996 1027 0 species Bartonella sp. JB15 1 1933906 1933912 Bartonella sp. Raccoon60 1 species 0 930 1933910 Bartonella sp. A1379B 1 species 0 925 species 0 1025 1933907 1 Bartonella sp. JB63 1 54526 Pelagibacterales 9 16 order 0 133249 9134 0 genus 19 Candidatus Fonsibacter 2 2045213 1 species 0 9115 1925548 Candidatus Fonsibacter ubiquis 1 0 family 60 124099 1655514 1 6 Pelagibacteraceae 56326 genus 0 21 3 Candidatus Pelagibacter 198251 1 1 2647897 8804 0 no rank 1002672 Candidatus Pelagibacter sp. IMCC9063 1 species 0 8804 species 0 47501 198252 Candidatus Pelagibacter ubique 1 67713 0 no rank 2 1655516 1 alpha proteobacterium HIMB59 744985 9401 species 0 58312 species 0 alpha proteobacterium HIMB5 1 859653 order 0 1308 2800060 6 1308 0 family 27 Hyphomonadaceae 6 69657 1 genus 0 14 788 2723 1 Hirschia 2 774 species 0 1 Hirschia baltica 2724 1 85 Hyphomonas 3 24 0 genus 493 1 2630699 281 no rank 0 1 Hyphomonas sp. Mor2 1906738 281 0 species species 0 188 81032 1 Hyphomonas neptunium 1 1191478 Magnetococcales 4 1 order 0 281 280 1 family 0 Magnetococcaceae 3 1 1191479 162171 1 2 Magnetococcus genus 0 1 279 Magnetococcus marinus 1 1124597 278 species 0 2079 6 order 0 Holosporales 8 1 1921002 Holosporaceae 2 44746 1 674 0 family 2 204454 1 no rank 0 672 0 species 672 86106 1 endosymbiont of Acanthamoeba sp. UWC8 8 0 family 606 1 1777752 3 Candidatus Paracaedibacteraceae 1 1521255 Candidatus Paracaedibacter 2 11 0 genus 598 Candidatus Paracaedibacter acanthamoebae 1 91604 587 species 0 2 2100208 793 0 family 1 1509243 Candidatus Nucleicultrix 2 4 genus 0 793 0 species 789 1509244 1 Candidatus Nucleicultrix amoebiphila 327 order 0 2 2800059 327 0 family 2 2800061 0 genus 3 327 74317 1 Maricaulis 2 324 species 0 1 Maricaulis maris 74318 2 order 0 430 1 255473 4 Parvularculales Parvularculaceae 3 255474 1 428 0 family 7 421 10 genus 0 Parvularcula 2 1 208215 0 species 411 208216 Parvularcula bermudensis 1 0 order 12 3089 204458 1 20 Caulobacterales family 0 62 3077 76892 1 Caulobacteraceae 19 196 0 no rank 1 81440 species 0 196 1759059 1 Caulobacteraceae bacterium OTSz_A_272 1 75 6 Caulobacter 38 0 genus 1290 1 2648921 241 no rank 0 366602 1 Caulobacter sp. K31 species 0 241 88688 Caulobacter segnis 1 0 species 206 69666 1 Caulobacter mirabilis 0 species 200 Caulobacter vibrioides 1 155892 404 0 species species 0 201 69395 1 Caulobacter henricii 7 Brevundimonas 41275 1 1075 genus 0 75 no rank 0 525 2622653 3 Brevundimonas sp. GW460-12-10-14-LB2 1 1827469 147 0 species Brevundimonas sp. LM2 1 1938605 254 species 0 124 species 0 Brevundimonas sp. DS20 1 1532555 species 0 209 74313 1 Brevundimonas subvibrioides Brevundimonas naejangsanensis 1 588932 149 species 0 117 species 0 Brevundimonas vesicularis 1 41276 2 Phenylobacterium 1 20 262 2 0 genus Phenylobacterium zucineum 1 284016 260 0 species 1 76890 2 Asticcacaulis 8 genus 0 192 78587 1 Asticcacaulis excentricus species 0 184 23018 71 order 0 Rhodobacterales 86 1 204455 1 31989 85 Rhodobacteraceae 367 0 family 22947 774 genus 0 12 Ruegeria 3 97050 1 1 2625375 283 0 no rank Ruegeria sp. TM1040 1 292414 283 species 0 89184 1 Ruegeria pomeroyi species 0 479 5 Rhodobacter 1 1060 1530 18 0 genus 643 0 species Rhodobacter sphaeroides 1 1063 2 196779 601 no rank 0 Rhodobacter sp. CZR27 1 2033869 274 0 species 1850250 Rhodobacter sp. LPB0142 1 species 0 327 species 0 268 1061 Rhodobacter capsulatus 1 1 34008 Rhodovulum 4 12 genus 0 1042 35806 Rhodovulum sulfidophilum 1 species 0 471 0 no rank 559 2631432 2 308754 Rhodovulum sp. MB263 1 0 species 298 species 0 261 1564506 1 Rhodovulum sp. P5 357 genus 0 1 309512 357 species 0 Dinoroseobacter shibae 1 215813 1 299261 344 0 genus 299262 1 Tateyamaria omphalii species 0 344 362 0 genus 1 Rhodobaca 2 119541 1 361 species 0 1 Rhodobaca barguzinensis 441209 2 263377 677 0 genus species 0 323 1229727 Thiobacimonas profunda 1 354 0 no rank 1 2640570 1792508 Yangia sp. CCB-MM3 1 0 species 354 genus 0 329 1759396 1 no rank 0 329 2622455 1 1920883 1 Marivivens sp. JLT3646 0 species 329 0 genus 13 1255 53945 1 Octadecabacter 4 0 species 456 1217908 Octadecabacter antarcticus 1 448 0 species 1 Octadecabacter arcticus 53946 1458307 1 Octadecabacter temperatus 0 species 338 Defluviimonas 2 1 1097466 334 3 0 genus species 0 331 1335048 1 Defluviimonas alba Pannonibacter 2 227873 1 273 genus 0 5 Pannonibacter phragmitetus 1 121719 268 0 species 0 genus 2 375 74032 1 Antarctobacter 2 74033 1 Antarctobacter heliothermus species 0 373 2 Thioclava 1 285107 252 1 genus 0 Thioclava nitratireducens 1 1915078 251 0 species 0 genus 7 403 360528 1 2 Pelagibaca Pelagibaca abyssi 1 1250539 396 0 species 377 1 genus 0 Marinovum 2 1 367771 42444 1 Marinovum algicola species 0 376 1013 genus 0 47 4 Labrenzia 478070 1 no rank 0 637 2648686 2 2021862 Labrenzia sp. VG12 1 0 species 332 0 species 305 1674922 1 Labrenzia sp. CP4 1 Labrenzia aggregata 187304 329 0 species 5 Celeribacter 875170 1 1421 0 genus 11 281 species 0 1 Celeribacter ethanolicus 1758178 0 species 397 1411902 Celeribacter manganoxidans 1 species 0 305 1397108 1 Celeribacter marinus 0 species 427 1208324 Celeribacter indicus 1 767 9 genus 0 3 Sulfitobacter 1 60136 196795 1 no rank 0 411 species 0 411 1917485 1 Sulfitobacter sp. AM1-D1 1402135 1 Sulfitobacter pseudonitzschiae 0 species 347 0 genus 4 363 74030 1 Roseovarius 2 species 0 359 215743 1 Roseovarius mucosus 356 0 genus 1 1609958 no rank 0 356 2643318 1 1609966 Confluentimicrobium sp. EMB200-NS6 1 0 species 356 1649279 1 genus 0 300 1 Ruegeria mobilis 379347 300 species 0 1 265 Paracoccus 9 50 genus 0 2186 311 no rank 0 1 246570 1529068 Paracoccus sp. BM15 1 species 0 311 species 0 327 1077935 1 Paracoccus zhejiangensis 34003 Paracoccus aminophilus 1 0 species 256 1945662 1 Paracoccus contaminans 0 species 189 34004 Paracoccus aminovorans 1 0 species 216 0 species 279 2065379 1 Paracoccus sp. CBA4604 266 1 Paracoccus denitrificans species 0 264 species 0 294 147645 Paracoccus yeei 1 genus 0 41 2617 302485 1 5 Phaeobacter 899 0 species 1 Phaeobacter inhibens 221822 1 Phaeobacter gallaeciensis 60890 726 0 species Phaeobacter piscinae 1 1580596 679 0 species species 0 272 1844006 Phaeobacter porticola 1 3 Roseobacter 1 2433 876 9 0 genus 1 Roseobacter denitrificans 2434 432 species 0 1 Roseobacter litoralis 42443 435 0 species 9 genus 0 487 1 92944 Ketogulonicigenium 3 species 0 273 92945 1 Ketogulonicigenium vulgare 0 species 205 92947 1 Ketogulonicigenium robustum 188905 1 genus 0 288 0 no rank 288 2645469 1 290400 1 Jannaschia sp. CCS1 species 0 288 191028 1 Leisingera 2 genus 0 1 441 133924 Leisingera methylohalidivorans 1 species 0 440 245186 1 Loktanella genus 0 1 58842 1 genus 0 359 359 0 no rank 1 2624628 Sagittula sp. P11 1 2009329 359 species 0 314 0 genus 1 159345 314 species 0 1 Roseibacterium elongatum 159346 2 Halocynthiibacter 1579315 1 419 genus 0 5 0 species 414 1579316 1 Halocynthiibacter arcticus 1284657 1 0 genus 697 Planktomarina temperata 1 1284658 697 0 species 0 genus 2 436357 Thalassococcus 1 2 58840 558 no rank 0 337 0 species 1 Rhodobacteraceae bacterium 1904441 2033435 Rhodobacteraceae bacterium QY30 1 species 0 221 431 0 genus 1 2211641 245188 1 Loktanella vestfoldensis 0 species 431 3197 0 no rank 8 82117 291 9 0 genus Phreatobacter 2 1 1632780 1868589 Phreatobacter sp. S-12 1 0 species 282 2 Polymorphum 991903 1 344 genus 0 16 328 species 0 Polymorphum gilvum 1 991904 321 0 genus 5 2 Micavibrio 213485 1 349221 1 Micavibrio aeruginosavorus 0 species 316 2 62654 2241 0 clade 0 genus 14 2241 767891 1 2 Candidatus Puniceispirillum species 0 2227 767892 1 Candidatus Puniceispirillum marinum 766 1 56 Rickettsiales order 0 27 22734 11290 family 0 23 Anaplasmataceae 23 942 1 1 943 6 Ehrlichia 36 genus 0 5057 892 0 no rank 1 106181 391036 Ehrlichia sp. HF 1 species 0 892 106178 4 0 species group 4129 945 0 species Ehrlichia muris 1 35795 779 1 Ehrlichia ruminantium species 0 1179 0 species 1048 944 Ehrlichia canis 1 species 0 957 945 Ehrlichia chaffeensis 1 33993 1 Neorickettsia 4 genus 0 7 692 1 Neorickettsia risticii 950 230 0 species Neorickettsia helminthoeca 1 33994 236 0 species 219 species 0 Neorickettsia sennetsu 1 951 952 8 tribe 0 4892 Wolbachia 8 953 1 4892 genus 0 103 4789 0 no rank 7 2640676 species 0 559 246273 Wolbachia endosymbiont of Cimex lectularius 1 0 species 573 100901 1 Wolbachia endosymbiont of Onchocerca ochengi 1 Wolbachia endosymbiont of Brugia malayi 80849 589 0 species Wolbachia endosymbiont of Drosophila simulans 1 77038 1295 species 0 77551 Wolbachia endosymbiont of Onchocerca volvulus 1 species 0 550 species 0 604 163164 1 Wolbachia endosymbiont of Drosophila melanogaster 619 species 0 Wolbachia sp. wRi 1 66084 626 4 genus 0 Anaplasma 4 1 768 106179 1 species group 0 318 318 species 0 1 Anaplasma phagocytophilum 948 1 Anaplasma centrale 769 144 species 0 1 Anaplasma marginale 770 160 species 0 9152 7 0 family Rickettsiaceae 28 1 775 8496 tribe 0 25 33988 2 Orientia 1 69474 1351 1 0 genus 784 Orientia tsutsugamushi 1 species 0 1350 1 780 23 Rickettsia 613 0 genus 7145 2 114292 1684 species group 0 0 species 815 785 1 Rickettsia typhi 0 species 869 782 1 Rickettsia prowazekii 1129742 2 species group 0 1503 788 Rickettsia canadensis 1 0 species 548 species 0 955 33990 Rickettsia bellii 1 no rank 0 796 114295 1 796 0 species Rickettsia endosymbiont of Bemisia tabaci 1 337479 114277 17 0 species group 2549 783 1 Rickettsia rickettsii 0 species 71 0 species 57 35788 Rickettsia africae 1 0 species 46 33991 Rickettsia montanensis 1 1 Rickettsia australis 787 507 0 species species 0 125 33989 1 Rickettsia amblyommatis 81 species 0 Rickettsia massiliae 1 35791 47589 1 Rickettsia peacockii species 0 208 0 species 318 786 1 Rickettsia akari 1 Rickettsia rhipicephali 33992 104 0 species 0 species 69 35790 1 Rickettsia japonica 1 Rickettsia slovaca 35794 44 species 0 68 species 0 Rickettsia heilongjiangensis 1 226665 Rickettsia parkeri 1 35792 44 species 0 species 0 42 1105106 1 Rickettsia philipii species 0 286 109232 Rickettsia monacensis 1 Rickettsia felis 1 42862 420 0 species 781 1 Rickettsia conorii species 0 59 649 2 0 genus Candidatus Phycorickettsia 2 1 2115980 2115978 Candidatus Phycorickettsia trachydisci 1 species 0 647 665 family 0 1 Candidatus Midichloriaceae 3 1328881 1 664 12 0 genus Candidatus Midichloria 2 1 411566 species 0 652 234827 Candidatus Midichloria mitochondrii 1 no rank 0 1600 1699067 1 1600 0 species Rickettsiales bacterium Ac37b 1 1528098 class 0 3 2109 1553900 1 11 Oligoflexia 5 Bdellovibrionales 213481 1 898 order 0 3 895 4 family 0 Bdellovibrionaceae 4 1 213483 1 0 genus 891 1 958 3 Bdellovibrio Bdellovibrio exovorus 1 453816 280 0 species species 0 610 959 Bdellovibrio bacteriovorus 1 1208 1 order 0 Bacteriovoracales 5 1 2024979 1652132 1 3 Halobacteriovoraceae 0 family 6 848 Halobacteriovorax 2 1652133 1 842 0 genus 4 0 species 838 97084 1 Halobacteriovorax marinus 359 family 0 1 263369 146784 1 genus 0 359 0 species 359 960 1 Bacteriovorax stolpii 626 class 0 6 1807140 225057 1 Acidithiobacillales 6 0 order 16 626 1 225058 Acidithiobacillaceae 5 11 0 family 610 1 119977 4 Acidithiobacillus 15 genus 0 599 920 1 Acidithiobacillus ferrooxidans species 0 185 173 0 species Acidithiobacillus caldus 1 33059 Acidithiobacillus ferrivorans 1 160808 226 species 0 338950 0 class 535 889 Gammaproteobacteria 1236 1 13 118884 5971 no rank 0 28 genus 0 1882 1 655184 Candidatus Thioglobus 3 1259 species 0 1 Candidatus Thioglobus singularis 1427364 Candidatus Thioglobus autotrophicus 1 1705394 595 species 0 Pseudohongiella 2 1 1524249 362 4 genus 0 358 species 0 1 Pseudohongiella spirulinae 1249552 2 0 genus 233 1 1608298 2 Thiolapillus 231 species 0 Thiolapillus brandeum 1 1076588 308 0 genus 1 349742 308 0 species 1 Sedimenticola thiotaurini 1543721 2121 0 clade 4 32036 1 Calyptogena okutanii thioautotrophic gill symbiont 410330 831 species 0 720 1 0 genus Candidatus Ruthia 2 1 1541743 species 0 719 386487 1 Candidatus Ruthia magnifica Bathymodiolus septemdierum thioautotrophic gill symbiont 1 113267 570 0 species clade 0 1065 198346 1 0 species 1065 186490 Candidatus Baumannia cicadellinicola 1 Oceanospirillales 71 1 135619 27722 53 order 0 1 135620 13 Oceanospirillaceae 14 0 family 3414 1614 genus 0 8 Marinomonas 4 28253 1 Marinomonas posidonica 1 936476 422 0 species 1 Marinomonas mediterranea 119864 518 0 species 1 196814 666 no rank 0 0 species 666 400668 Marinomonas sp. MWYL1 1 469 1 genus 0 Oleispira 2 1 188907 Oleispira antarctica 1 188908 468 species 0 48075 1 Marinobacterium 2 genus 0 3 491 488 species 0 Marinobacterium aestuarii 1 1821621 genus 0 2 387 1537406 1 Bacterioplanes 2 species 0 385 1249553 1 Bacterioplanes sanyensis 2 Thalassolituus 187492 1 439 genus 0 4 Thalassolituus oleivorans 1 187493 435 species 0 355 family 0 1 Hahellaceae 3 224379 1 genus 0 3 354 158481 1 Hahella 2 0 species 351 158327 1 Hahella chejuensis 224372 1 Alcanivoracaceae 9 family 0 18 13689 1 59753 Alcanivorax 6 78 genus 0 13232 844 species 0 Alcanivorax xenomutans 1 1094342 1306787 Alcanivorax pacificus 1 species 0 599 0 species 5579 59754 Alcanivorax borkumensis 1 781 species 0 Alcanivorax dieselolei 1 285091 1 2638842 5351 0 no rank 5351 species 0 1 Alcanivorax sp. NBRC 101098 1113728 1 2025617 Ketobacter 2 9 0 genus 439 430 0 species 1 Ketobacter alkanivorans 1917421 0 family 3 825 255527 1 5 Saccharospirillaceae Reinekea 2 230494 1 423 genus 0 2 1336806 Reinekea forsetii 1 species 0 421 1 1445504 Gynuella 2 1 genus 0 399 398 0 species Gynuella sunshinyii 1 1445505 0 family 10 1883 1920240 1 Kangiellaceae 6 1873 39 genus 0 Kangiella 5 1 261963 261964 1 Kangiella koreensis species 0 346 1561924 Kangiella profundi 1 species 0 360 0 species 741 914150 Kangiella geojedonensis 1 1 Kangiella sediminilitoris 1144748 387 species 0 7025 family 0 46 Halomonadaceae 31 28256 1 1 0 genus 227 1 376488 2 Halotalea 226 0 species 1 Halotalea alkalilenta 376489 1 504090 Kushneria 3 9 0 genus 448 174 0 species 1 Kushneria marisflavi 157779 Kushneria konosiri 1 698828 265 0 species 0 genus 75 3935 2745 1 Halomonas 15 0 species 324 1178482 1 Halomonas huangheensis no rank 0 2088 2609666 8 1 Halomonas sp. GT 1971364 271 0 species 1 Halomonas sp. 1513 1883416 252 0 species 0 species 254 2136172 Halomonas sp. SF2003 1 0 species 258 1610576 1 Halomonas sp. R57-5 species 0 268 1504981 Halomonas sp. KO116 1 1962264 1 Halomonas sp. 'Soap Lake #7' 0 species 290 1949203 Halomonas sp. 'Soap Lake #6' 1 0 species 291 204 0 species Halomonas sp. GFAJ-1 1 1118153 371 species 0 Halomonas beimenensis 1 475662 0 species 241 507626 1 Halomonas chromatireducens Halomonas campaniensis 1 213554 227 0 species Halomonas hydrothermalis 1 115561 310 0 species 1 Halomonas aestuarii 1897729 299 0 species Cobetia 2 1 204286 286 1 0 genus 28258 1 Cobetia marina species 0 285 1 42054 Chromohalobacter 2 1 genus 0 231 species 0 230 158080 Chromohalobacter salexigens 1 0 genus 1 243 404432 1 2 Salinicola 0 species 242 1771309 1 Salinicola tamaricis 114403 4 no rank 0 1609 4 0 genus 773 1 235572 Candidatus Portiera 2 1 Candidatus Portiera aleyrodidarum 91844 769 0 species 1 1495768 515 genus 0 1495769 Candidatus Evansia muelleri 1 0 species 515 114185 1 0 genus 321 Candidatus Carsonella ruddii 1 114186 321 species 0 478 8 family 0 Oleiphilaceae 3 1 191033 470 0 genus 5 Oleiphilus 2 141450 1 141451 1 Oleiphilus messinensis 0 species 465 Methylococcales 12 135618 1 1784 0 order 8 8 family 0 1776 1 403 11 Methylococcaceae 1 413 Methylococcus 2 3 0 genus 132 414 1 Methylococcus capsulatus 0 species 129 2 Methylomicrobium 1 39773 369 2 genus 0 Methylomicrobium alcaliphilum 1 271065 367 0 species 1 762296 180 0 genus 1704499 Methylovulum psychrotolerans 1 0 species 180 5 Methylomonas 416 1 1087 genus 0 40 0 species 185 702114 Methylomonas koyamae 1 Methylomonas methanica 1 421 247 species 0 224 no rank 0 1 2608980 224 species 0 1 Methylomonas sp. DH-1 1727196 Methylomonas denitrificans 1 1538553 391 species 0 1 135613 Chromatiales 50 59 order 0 8287 Ectothiorhodospiraceae 17 1 72276 2598 27 0 family 333 2 0 genus Acidihalobacter 2 1 1765964 Acidihalobacter prosperus 1 160660 331 0 species 257 4 genus 0 2 Ectothiorhodospira 1 1051 1 2684909 253 no rank 0 253 species 0 1 Ectothiorhodospira sp. BSL-9 1442136 1 85108 160 genus 0 1 Halorhodospira halophila 1053 160 0 species 3 Spiribacter 1 1335745 398 10 genus 0 1335746 1 Spiribacter salinus species 0 168 0 species 220 1335757 1 Spiribacter curvatus 2 Alkalilimnicola 133193 1 210 0 genus 6 204 0 species 1 Alkalilimnicola ehrlichii 351052 1 106633 Thioalkalivibrio 6 60 0 genus 1213 1 2621013 206 0 no rank 1 Thioalkalivibrio sp. K90mix 396595 206 0 species 0 species 190 186931 1 Thioalkalivibrio nitratireducens species 0 399 1033854 1 Thioalkalivibrio sulfidiphilus 106634 1 Thioalkalivibrio versutus 0 species 148 species 0 210 108010 Thioalkalivibrio paradoxus 1 no rank 0 267 451214 2 5 genus 0 267 1 1273155 Thiohalobacter 2 species 0 262 585455 Thiohalobacter thiocyanaticus 1 Wenzhouxiangellaceae 3 1676141 1 294 family 0 3 291 0 genus 3 2 Wenzhouxiangella 1676142 1 1579979 1 Wenzhouxiangella marina species 0 288 Granulosicoccaceae 3 1 449719 547 6 0 family 541 15 genus 0 2 Granulosicoccus 1 437504 526 0 species Granulosicoccus antarcticus 1 437505 300 0 family 1 Woeseiaceae 3 1738654 1 2 Woeseia 1738655 1 299 0 genus 4 Woeseia oceani 1 1548547 295 0 species 17 Chromatiaceae 1046 1 3872 0 family 27 156885 1 Thioflavicoccus 2 genus 0 1 246 1 Thioflavicoccus mobilis 80679 245 0 species 203 0 genus 3 Allochromatium 2 85072 1 species 0 200 1049 1 Allochromatium vinosum 8 0 genus 508 1 1980513 Candidatus Nitrosoglobus 2 0 species 500 1630141 1 Candidatus Nitrosoglobus terrae Thiodictyon 2 53392 1 986 genus 0 6 1 Candidatus Thiodictyon syntrophicum 1166950 980 0 species 0 genus 3 304 85076 1 Marichromatium 2 1 Marichromatium purpuratum 37487 301 species 0 13724 1 genus 0 257 257 species 0 Thiocystis violascens 1 73141 1074 genus 0 17 4 Nitrosococcus 1227 1 1229 Nitrosococcus oceani 1 0 species 292 0 species 540 473531 1 Nitrosococcus watsonii 225 species 0 1 Nitrosococcus halophilus 133539 82569 1 no rank 0 267 0 species 267 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 255526 1 Halothiobacillaceae 4 family 0 2 350 109262 1 3 Halothiobacillus 0 genus 14 348 1 2636392 148 no rank 0 148 species 0 Halothiobacillus sp. LS2 1 1860122 0 species 186 927 Halothiobacillus neapolitanus 1 Immundisolibacterales 4 1934945 1 254 0 order 3 251 4 family 0 3 Immundisolibacteraceae 1 1934946 1 1934947 Immundisolibacter 2 8 0 genus 247 species 0 239 1810504 Immundisolibacter cernigliae 1 52539 106 order 0 103 Alteromonadales 1 135622 15 family 0 14351 1 267888 Pseudoalteromonadaceae 25 genus 0 220 14336 53246 1 24 Pseudoalteromonas 359 0 species Pseudoalteromonas piscicida 1 43662 1 Pseudoalteromonas spongiae 298657 575 0 species species 0 501 1348114 1 Pseudoalteromonas piratica 469 species 0 Pseudoalteromonas phenolica 1 161398 0 species 298 43658 1 Pseudoalteromonas rubra species 0 601 394751 1 Pseudoalteromonas arctica 28107 1 Pseudoalteromonas espejiana 0 species 474 species 0 493 228 1 Pseudoalteromonas haloplanktis 0 species 557 247523 1 Pseudoalteromonas aliena 526 0 species Pseudoalteromonas luteoviolacea 1 43657 Pseudoalteromonas atlantica 1 288 849 0 species 0 species 482 176102 Pseudoalteromonas agarivorans 1 43659 Pseudoalteromonas tetraodonis 1 species 0 445 Pseudoalteromonas nigrifaciens 1 28109 519 species 0 species 0 688 314281 Pseudoalteromonas tunicata 1 418 0 species 1 Pseudoalteromonas issachenkonii 152297 194690 5 0 no rank 4263 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 1720343 563 0 species 1514074 Pseudoalteromonas sp. NC201 1 species 0 1374 0 species 586 283699 1 Pseudoalteromonas sp. Bsw20308 234831 1 Pseudoalteromonas sp. SM9913 0 species 455 1761891 Pseudoalteromonas sp. 13-15 1 species 0 1285 0 species 1079 267375 1 Pseudoalteromonas marina 166935 1 Pseudoalteromonas translucida 0 species 520 1 72275 Alteromonadaceae 29 38 family 0 20201 genus 0 70 3520 2742 1 Marinobacter 10 Marinobacter psychrophilus 1 330734 257 0 species 1420917 Marinobacter salarius 1 species 0 1343 0 no rank 810 83889 3 1671721 Marinobacter sp. CP1 1 0 species 258 0 species 268 1749259 Marinobacter sp. LQ44 1 284 species 0 1 Marinobacter sp. BSs20148 490759 196 species 0 1 Marinobacter similis 1420916 219 species 0 1 Marinobacter salinus 1874317 species 0 231 1033846 Marinobacter adhaerens 1 Marinobacter hydrocarbonoclasticus 1 2743 394 0 species 863 3 0 genus Paraglaciecola 2 1 1621534 species 0 860 326544 1 Paraglaciecola psychrophila 2 genus 0 349 1 261825 Agarivorans 2 1 Agarivorans gilvus 680279 347 0 species 14105 58 0 genus Alteromonas 10 1 226 428 0 species Alteromonas australica 1 589873 0 no rank 1423 2614992 3 1 Alteromonas sp. RW2A1 1917158 556 species 0 species 0 331 1777491 Alteromonas sp. Mac1 1 2058133 1 Alteromonas sp. MB-3u-76 species 0 536 1 Alteromonas addita 287094 423 species 0 233316 Alteromonas stellipolaris 1 0 species 519 0 species 9432 28108 Alteromonas macleodii 1 species 0 410 715451 Alteromonas naphthalenivorans 1 314275 Alteromonas mediterranea 1 species 0 1412 0 genus 8 973 89404 1 Glaciecola 3 492 species 0 1 Glaciecola nitratireducens 300231 1 2618684 473 0 no rank 0 species 473 983545 Glaciecola sp. 4H-3-7+YE-5 1 genus 0 353 1751872 1 species 0 353 1526571 1 Lacimicrobium alkaliphilum 6 Idiomarinaceae 267893 1 862 0 family 1 861 genus 0 14 Idiomarina 5 135575 1 0 species 215 1096243 Idiomarina piscisalsi 1 135577 Idiomarina loihiensis 1 species 0 245 387 no rank 0 2 2614829 Idiomarina sp. OT37-5b 1 2100422 184 0 species 1 Idiomarina sp. X4 2055892 203 species 0 12 family 0 4974 1 267889 Colwelliaceae 8 1518149 1 genus 0 752 species 0 752 1763536 1 Thalassotalea crassostreae genus 0 22 4210 28228 1 Colwellia 6 922 species 0 1 Colwellia psychrerythraea 28229 1967665 1 Colwellia beringensis species 0 825 no rank 0 2441 196834 3 Colwellia sp. PAMC 21821 1 1816219 928 0 species 1816218 Colwellia sp. PAMC 20917 1 species 0 822 58049 Colwellia sp. MT41 1 species 0 691 267892 2 0 family 233 2 Ferrimonas 44011 1 233 0 genus 3 230 0 species Ferrimonas balearica 1 44012 1463 3 family 0 4 Psychromonadaceae 1 267894 67572 1 3 Psychromonas 0 genus 5 1460 357794 1 Psychromonas ingrahamii species 0 809 1 2614957 646 0 no rank 314282 1 Psychromonas sp. CNPT3 0 species 646 0 family 4 707 267891 1 Moritellaceae 3 3 0 genus 703 1 58050 Moritella 2 700 species 0 Moritella viscosa 1 80854 1 267890 Shewanellaceae 25 15 family 0 9642 24 Shewanella 22 1 9627 genus 0 123 1 Shewanella baltica 62322 898 species 0 1 Shewanella bicestrii 2018305 199 0 species 1 Shewanella amazonensis 60478 157 0 species 1 Shewanella frigidimarina 56812 575 species 0 207 0 species Shewanella oneidensis 1 70863 60961 Shewanella woodyi 1 species 0 579 species 0 677 225848 Shewanella psychrophila 1 0 species 138 260364 Shewanella marisflavi 1 species 0 390 271097 1 Shewanella sediminis 0 species 828 60217 Shewanella violacea 1 0 species 337 192073 Shewanella denitrificans 1 1470 0 no rank 6 196818 Shewanella sp. W3-18-1 1 351745 278 species 0 60481 Shewanella sp. MR-7 1 0 species 223 60480 Shewanella sp. MR-4 1 species 0 200 species 0 246 94122 Shewanella sp. ANA-3 1 2029986 Shewanella sp. WE21 1 species 0 261 262 species 0 Shewanella sp. Pdp11 1 2059264 1 Shewanella putrefaciens 24 314 species 0 70864 Shewanella pealeana 1 0 species 289 1270 0 species 1 Shewanella halifaxensis 271098 358 species 0 1 Shewanella piezotolerans 404011 species 0 649 93973 1 Shewanella japonica species 0 169 359303 Shewanella loihica 1 1 135614 Xanthomonadales 53 75 0 order 17068 107 family 0 15469 1 32033 Xanthomonadaceae 38 9 Stenotrophomonas 40323 1 3561 0 genus 52 83617 Stenotrophomonas nitritireducens 1 0 species 279 Stenotrophomonas acidaminiphila 1 128780 340 0 species 216778 Stenotrophomonas rhizophila 1 species 0 174 196198 4 no rank 0 1024 Stenotrophomonas sp. KCTC 12332 1 1793721 266 0 species 256 species 0 1 Stenotrophomonas sp. WZN-1 2005046 1827305 Stenotrophomonas sp. MYb57 1 species 0 340 1 Stenotrophomonas sp. LM091 1904944 162 species 0 995085 1 species group 0 1692 40324 1 Stenotrophomonas maltophilia species 0 1692 3 Pseudoxanthomonas 1 83618 550 9 0 genus species 0 164 415229 1 Pseudoxanthomonas spadix 314722 Pseudoxanthomonas suwonensis 1 0 species 377 1 338 17 Xanthomonas 130 0 genus 7641 223 0 species Xanthomonas sacchari 1 56458 species 0 127 56459 Xanthomonas vasicola 1 1284 species 0 Xanthomonas campestris 1 339 species 0 173 1985254 1 Xanthomonas phaseoli 643453 2 0 species group 1992 Xanthomonas citri 1 346 1657 0 species 335 species 0 1 Xanthomonas fuscans 366648 1 Xanthomonas euvesicatoria 456327 250 species 0 178 0 species Xanthomonas albilineans 1 29447 568 0 species Xanthomonas translucens 1 343 species 0 156 53413 1 Xanthomonas axonopodis species 0 164 366650 1 Xanthomonas alfalfae 442694 Xanthomonas perforans 1 species 0 154 1441 0 species Xanthomonas oryzae 1 347 292 species 0 Xanthomonas vesicatoria 1 56460 Xanthomonas fragariae 1 48664 294 0 species Xanthomonas hortorum 1 56454 215 0 species genus 0 20 2238 68 1 5 Lysobacter Lysobacter enzymogenes 1 69 274 0 species species 0 856 84531 1 Lysobacter antibioticus 725 0 species 1 Lysobacter capsici 435897 species 0 363 262324 1 Lysobacter gummosus 0 genus 2 144 83614 1 2 Luteimonas species 0 142 2006110 Luteimonas sp. 100111 1 1 2370 1228 0 genus 2371 Xylella fastidiosa 1 species 0 1228 1524 19 family 0 14 Rhodanobacteraceae 1 1775411 551 0 genus 12 4 Dyella 231454 1 species 0 187 231455 Dyella japonica 1 445710 Dyella thiooxydans 1 0 species 215 Dyella jiangningensis 1 1379159 137 species 0 2 0 genus 156 1 242605 2 Luteibacter 0 species 154 242606 1 Luteibacter rhizovicinus 1 75309 Rhodanobacter 2 3 0 genus 241 0 species 238 666685 1 Rhodanobacter denitrificans 0 genus 123 2233801 1 1 Xanthomonadales bacterium D13 2021234 123 species 0 2 Frateuria 70411 1 162 0 genus 1 161 species 0 1 Frateuria aurantia 81475 8 genus 0 272 1 323413 2 Dokdonella 264 0 species Dokdonella koreensis 1 323415 52782 17 0 order Vibrionales 44 1 135623 641 1 43 Vibrionaceae 0 family 98 52765 5 genus 0 5039 1 657 Photobacterium 4 species 0 198 1295392 Photobacterium gaetbulicola 1 Photobacterium profundum 1 74109 491 0 species Photobacterium damselae 1 38293 4345 species 0 511678 1 Aliivibrio 4 0 genus 15 2020 40269 1 Aliivibrio salmonicida species 0 495 880 0 species 1 Aliivibrio wodanis 80852 species 0 630 668 1 Aliivibrio fischeri 2042066 1 Paraphotobacterium 2 genus 0 6 1730 1724 0 species Paraphotobacterium marinum 1 1755811 1 246861 Grimontia 2 1 0 genus 200 199 0 species Grimontia hollisae 1 673 662 1 30 Vibrio genus 0 327 43678 Vibrio breoganii 1 553239 309 species 0 717610 10 species group 0 33287 species 0 3503 669 1 Vibrio harveyi 663 1 Vibrio alginolyticus species 0 1826 680 1 Vibrio campbellii 0 species 4555 3590 0 species 1 Vibrio owensii 696485 15987 0 species 1 Vibrio rotiferianus 190895 695 0 species 1 Vibrio natriegens 691 784 species subgroup 0 2 2315253 0 species 239 150340 Vibrio antiquarius 1 50719 1 Vibrio diabolicus 0 species 545 1 Vibrio jasicida 766224 1040 species 0 Vibrio parahaemolyticus 1 670 1307 species 0 0 no rank 455 2614977 2 154 0 species Vibrio sp. 2521-89 1 2014742 301 species 0 1 Vibrio sp. EJY3 1116375 Vibrio vulnificus 1 672 1389 0 species 0 species 791 190893 Vibrio coralliilyticus 1 674 1 Vibrio mimicus species 0 328 0 species 271 676 Vibrio fluvialis 1 2025808 1 Vibrio qinghaiensis species 0 285 586 species 0 Vibrio scophthalmi 1 45658 29494 1 Vibrio furnissii species 0 337 0 species 428 687 1 Vibrio gazogenes 0 species 290 28173 Vibrio nigripulchritudo 1 1435069 1 Vibrio tritonius species 0 385 1 Vibrio hyugaensis 1534743 949 0 species 900 species 0 Vibrio tasmaniensis 1 212663 666 Vibrio cholerae 1 0 species 566 0 species group 499 1891919 1 499 0 species Vibrio tubiashii 1 29498 52443 Vibrio tapetis 1 0 species 571 0 species 725 55601 Vibrio anguillarum 1 4 Nevskiales 1 1775403 197 6 0 order 0 family 1 568386 1 Sinobacteraceae 2689614 2 family 0 190 2 Steroidobacter 1 469322 190 5 genus 0 465721 Steroidobacter denitrificans 1 0 species 185 1 135624 Aeromonadales 28 25 order 0 5124 84642 1 27 Aeromonadaceae 0 family 51 5099 43947 1 Tolumonas 2 0 genus 2 172 0 species 170 43948 1 Tolumonas auensis 3831 genus 0 117 Aeromonas 18 642 1 840 0 species 1 Aeromonas hydrophila 644 1 Aeromonas caviae 648 73 0 species 1 Aeromonas veronii 654 404 0 species species 0 156 558964 1 Aeromonas aquatica 652 1 Aeromonas schubertii 0 species 149 651 1 Aeromonas media species 0 110 196024 Aeromonas dhakensis 1 0 species 140 948519 1 Aeromonas rivipollensis 0 species 122 8 257493 1169 0 no rank 92 0 species 1 Aeromonas sp. ASNIH3 1636608 Aeromonas sp. ASNIH5 1 1758179 131 species 0 87 0 species Aeromonas sp. ASNIH7 1 1920107 124 0 species Aeromonas sp. CU5 1 2033033 306 species 0 Aeromonas sp. ASNIH1 1 1636606 species 0 197 1636609 Aeromonas sp. ASNIH4 1 77 0 species 1 Aeromonas sp. ASNIH2 1636607 Aeromonas sp. CA23 1 2033032 155 species 0 Aeromonas salmonicida 1 645 551 species 0 genus 0 260 129577 1 260 no rank 0 1 2636315 260 0 species Oceanimonas sp. GK1 1 511062 245 3 genus 0 2 Zobellella 1 347533 242 0 species Zobellella denitrificans 1 347534 540 14 genus 0 Oceanisphaera 3 1 225143 species 0 236 1416627 Oceanisphaera profunda 1 1903694 1 Oceanisphaera sp. AMac2203 species 0 290 1240482 1 6 Orbales 0 order 2 1465 13 0 family 1463 1 1240483 Orbaceae 5 785 genus 0 2 Gilliamella 2 1193503 1 0 species 783 1196095 1 Gilliamella apicola 3 genus 0 665 1 1335631 Frischella 2 Frischella perrara 1 1267021 662 species 0 Enterobacterales 244 91347 1 69870 order 0 199 29669 family 0 160 119 Enterobacteriaceae 543 1 4242 7 genus 0 5 Escherichia 1 561 3768 species 0 Escherichia coli 1 562 species 0 88 1499973 Escherichia marmotae 1 0 species 301 208962 Escherichia albertii 1 78 0 species 1 Escherichia fergusonii 564 570 1 Klebsiella 10 0 genus 65 4859 no rank 0 286 2608929 2 0 species 162 1905288 1 Klebsiella sp. LTGPAF-6F 0 species 124 1934254 1 Klebsiella sp. M5al 668 species 0 Klebsiella oxytoca 1 571 0 species 134 2026240 Klebsiella quasivariicola 1 0 species 380 1134687 1 Klebsiella michiganensis 292 0 species 1 Klebsiella variicola 244366 0 species 176 1463165 Klebsiella quasipneumoniae 1 548 1 Klebsiella aerogenes species 0 953 Klebsiella pneumoniae 1 573 1905 0 species genus 0 645 409304 1 0 species 645 168169 Candidatus Ishikawaella capsulata 1 1 1330545 4 Lelliottia 7 genus 0 418 92 0 species Lelliottia nimipressuralis 1 69220 1 Lelliottia amnigena 61646 226 species 0 species 0 93 1907578 Lelliottia jeotgali 1 1335483 1 genus 0 84 563 1 Shimwellia blattae species 0 84 0 genus 133 579 1 Kluyvera intermedia 1 61648 133 species 0 no rank 0 5873 191675 21 21 84563 5873 0 clade 1 1906661 269 0 genus Candidatus Gullanella endobia 1 1070130 269 species 0 84564 7 clade 0 3019 39 genus 0 3019 1 203804 Candidatus Blochmannia 7 Candidatus Blochmannia chromaiodes 1 251542 448 species 0 203907 1 Candidatus Blochmannia floridanus species 0 586 251535 Candidatus Blochmannia vafer 1 species 0 598 417 0 species 1 Candidatus Blochmannia pennsylvanicus 101534 931 no rank 0 2 711328 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 474 0 species 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 457 0 species 292 0 clade 1 199891 species 0 292 1835721 1 secondary endosymbiont of Trabutina mannipara 1 1682492 Candidatus Tachikawaea 2 1 0 genus 875 1410383 1 Candidatus Tachikawaea gelatinosa 0 species 874 1 genus 0 124 1 1906659 Candidatus Hoaglandella 2 species 0 123 1778263 Candidatus Hoaglandella endobia 1 858 clade 0 4 146507 568987 1 Candidatus Hamiltonella 2 0 genus 1 374 0 species 373 138072 1 Candidatus Hamiltonella defensa 336 species 0 secondary endosymbiont of Heteropsylla cubana 1 134287 148 species 0 1 secondary endosymbiont of Ctenarytaina eucalypti 1199245 84 2 genus 0 Candidatus Doolittlea 2 1 1906657 1778262 1 Candidatus Doolittlea endobia 0 species 82 0 genus 1 352 1906660 1 Candidatus Mikella 2 1778264 1 Candidatus Mikella endobia 0 species 351 7 genus 0 479 1 401618 Candidatus Riesia 2 401619 1 Candidatus Riesia pediculicola species 0 472 Kosakonia 5 1 1330547 504 11 0 genus 0 species 122 1158459 Kosakonia sacchari 1 130 0 species 1 Kosakonia oryzae 497725 283686 1 Kosakonia radicincitans species 0 158 1 Kosakonia cowanii 208223 83 0 species genus 0 14 867 413496 1 Cronobacter 8 Cronobacter dublinensis 1 413497 120 species 0 413501 Cronobacter muytjensii 1 species 0 97 species 0 203 28141 1 Cronobacter sakazakii 1 Cronobacter turicensis 413502 101 0 species 125 species 0 1 Cronobacter condimenti 1163710 114 0 species 1 Cronobacter universalis 535744 93 0 species 1 Cronobacter malonaticus 413503 547 1 Enterobacter 22 0 genus 123 3189 9 2608935 685 0 no rank Enterobacter sp. SA187 1 1914861 100 species 0 species 0 63 1827481 1 Enterobacter sp. ODB01 species 0 88 2051905 Enterobacter sp. CRENT-193 1 95 species 0 Enterobacter sp. FY-07 1 1692238 Enterobacter sp. Crenshaw 1 1977566 54 0 species 0 species 44 1560339 Enterobacter sp. E20 1 Enterobacter sp. 638 1 399742 87 species 0 0 species 112 1166130 Enterobacter sp. R4-368 1 1868135 1 Enterobacter sp. HK169 0 species 42 12 354276 2381 0 species group 1 Enterobacter ludwigii 299767 69 species 0 2757714 3 0 no rank 215 species 0 83 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 1 Enterobacter cloacae complex sp. ECNIH7 1915310 57 species 0 species 0 75 2027919 Enterobacter cloacae complex bacterium 1 60 species 0 Enterobacter kobei 1 208224 Enterobacter asburiae 1 61645 223 species 0 650 0 species 509 3 Enterobacter hormaechei 158836 1 67 0 subspecies Enterobacter xiangfangensis 1 1296536 74 subspecies 0 Enterobacter cloacae complex 'Hoffmann cluster III' 1 1812934 species 0 1042 550 1 Enterobacter cloacae 59 species 0 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 69218 Enterobacter cancerogenus 1 0 species 63 3188 0 genus 2 Salmonella 3 590 1 225 species 0 Salmonella bongori 1 54736 28901 1 Salmonella enterica species 0 2961 212 7 genus 0 Shigella 4 1 620 47 0 species Shigella flexneri 1 623 2629414 1 no rank 0 42 0 species 42 1813821 Shigella sp. PAMC 28760 1 622 Shigella dysenteriae 1 0 species 116 0 genus 127 1048757 1 127 0 species 1 Candidatus Moranella endobia 1048758 452 genus 0 2 Raoultella 3 160674 1 species 0 102 575 1 Raoultella planticola species 0 348 54291 1 Raoultella ornithinolytica 14 Citrobacter 544 1 2122 genus 0 63 67824 Citrobacter farmeri 1 0 species 233 1344959 7 0 species group 1149 species 0 82 2066049 1 Citrobacter freundii complex sp. CFNIH2 1 Citrobacter freundii complex sp. CFNIH4 2077148 84 species 0 0 species 88 2077149 Citrobacter freundii complex sp. CFNIH9 1 species 0 465 546 1 Citrobacter freundii 168 species 0 1 Citrobacter werkmanii 67827 species 0 82 2077147 1 Citrobacter freundii complex sp. CFNIH3 0 species 180 57706 Citrobacter braakii 1 2 2644389 171 no rank 0 1920110 1 Citrobacter sp. CFNIH10 species 0 91 80 0 species 1 Citrobacter sp. FDAARGOS_156 1702170 0 species 132 545 Citrobacter koseri 1 1 Citrobacter rodentium 67825 110 0 species 264 0 species 1 Citrobacter amalonaticus 35703 Pluralibacter 3 1330546 1 326 genus 0 3 0 species 121 1334193 1 [Enterobacter] lignolyticus 1 Pluralibacter gergoviae 61647 202 0 species 4 Leclercia 1 83654 449 13 0 genus 83655 1 Leclercia adecarboxylata 0 species 169 0 no rank 267 2627398 2 1920114 1 Leclercia sp. LSNIH1 0 species 123 Leclercia sp. LSNIH3 1 1920116 144 species 0 5 36866 960 no rank 0 2066051 1 Enterobacteriaceae bacterium ENNIH1 species 0 112 93 species 0 1 Enterobacteriaceae bacterium strain FGI 57 693444 1 Plautia stali symbiont 891974 530 species 0 1920109 1 Enterobacteriaceae bacterium ENNIH2 species 0 116 0 species 109 1920128 1 Enterobacteriaceae bacterium ENNIH3 genus 0 380 158483 1 380 0 species Cedecea neteri 1 158822 0 family 243 1903416 2 243 5 genus 0 Pragia 2 1 82984 82985 1 Pragia fontium species 0 238 1 1903411 37 Yersiniaceae 30 0 family 9994 Yersinia 13 1 629 5421 51 genus 0 species 0 207 29485 1 Yersinia rohdei 234 0 species 1 Yersinia aldovae 29483 no rank 0 188 2653513 1 188 0 species 1 Yersinia sp. FDAARGOS_228 1839800 29486 1 Yersinia ruckeri species 0 250 1649845 3 species group 0 2534 species 0 1041 367190 1 Yersinia similis 888 species 0 Yersinia pestis 1 632 633 1 Yersinia pseudotuberculosis species 0 605 species 0 590 29484 1 Yersinia frederiksenii 630 1 Yersinia enterocolitica species 0 761 0 species 172 263819 Yersinia aleksiciae 1 631 1 Yersinia intermedia species 0 212 1 Yersinia kristensenii 28152 222 species 0 929812 1 genus 0 157 1 Gibbsiella quercinecans 929813 157 species 0 1 0 genus 466 1 34037 Rahnella 4 34038 Rahnella aquatilis 1 species 0 161 304 no rank 0 2 2635087 1 Rahnella sp. Y9602 741091 161 species 0 143 species 0 1 Rouxiella sp. ERMR1:05 1805933 Chania 2 1 1745211 148 3 genus 0 1639108 Chania multitudinisentens 1 species 0 145 3772 0 genus 80 16 Serratia 613 1 61651 1 Serratia ficaria species 0 134 Serratia rubidaea 1 61652 140 0 species species 0 1067 615 1 Serratia marcescens 0 species 102 28151 Serratia proteamaculans 1 2647522 8 no rank 0 1274 0 species 332 488142 1 Serratia sp. SCBI 108 species 0 1 Serratia sp. AS13 768493 203 0 species Serratia sp. ATCC 39006 1 104623 108 0 species 1 Serratia sp. AS12 768490 2033438 Serratia sp. MYb239 1 0 species 131 species 0 130 1327989 1 Serratia sp. FS14 1 Serratia sp. SSNIH1 1758196 135 species 0 species 0 127 671990 1 Serratia sp. FGI94 502 0 species 1 Serratia fonticola 47917 281 species 0 Serratia plymuthica 1 82996 0 species 192 614 1 Serratia liquefaciens 12 0 family 3422 1 1903410 Pectobacteriaceae 19 genus 0 174 71655 1 1109412 1 Brenneria goodwinii species 0 174 Dickeya 6 204037 1 1063 0 genus 22 1 Dickeya dadantii 204038 126 0 species 1 Dickeya dianthicola 204039 135 0 species 1 Dickeya solani 1089444 222 0 species 1778540 Dickeya fangzhongdai 1 0 species 131 species 0 427 204042 Dickeya zeae 1 1 122277 Pectobacterium 6 34 genus 0 1307 Pectobacterium wasabiae 1 55208 187 0 species species 0 182 29471 Pectobacterium atrosepticum 1 Pectobacterium parmentieri 1 1905730 353 species 0 Pectobacterium carotovorum 1 554 404 0 species 147 species 0 1 Pectobacterium polaris 2042057 84565 1 Sodalis 5 0 genus 25 866 1239307 1 Sodalis praecaptivus species 0 165 1929246 1 Sodalis endosymbiont of Henestaris halophilus species 0 341 180 0 species Candidatus Sodalis pierantonius 1 1486991 63612 1 Sodalis glossinidius species 0 155 Morganellaceae 22 1903414 1 6421 0 family 25 771 0 genus 5 Arsenophonus 2 637 1 0 species 766 634113 Arsenophonus symbiont of Lipoptena fortisetosa 1 Proteus 3 1 583 1545 10 0 genus Proteus mirabilis 1 584 951 species 0 Proteus vulgaris 1 585 584 species 0 1053 genus 0 6 4 Photorhabdus 29487 1 1 Photorhabdus luminescens 29488 348 0 species Photorhabdus temperata 1 574560 242 0 species 0 species 457 291112 1 Photorhabdus asymbiotica 6 Xenorhabdus 1 626 1526 12 0 genus 0 species 231 628 1 Xenorhabdus nematophila 40577 1 Xenorhabdus poinarii species 0 235 1 Xenorhabdus doucetiae 351671 198 0 species 317 species 0 1 Xenorhabdus hominickii 351679 40576 Xenorhabdus bovienii 1 0 species 533 1259 0 genus 7 Providencia 4 586 1 0 species 252 126385 Providencia alcalifaciens 1 species 0 552 588 1 Providencia stuartii 587 1 Providencia rettgeri species 0 448 3 0 genus 242 1 581 2 Morganella 239 species 0 1 Morganella morganii 582 1 1903409 Erwiniaceae 28 34 family 0 13526 1448 15 genus 0 Wigglesworthia 2 1 51228 51229 1 Wigglesworthia glossinidia 0 species 1433 0 genus 278 2100764 2 0 species 182 665913 Pantoea calida 1 species 0 96 665914 Pantoea gaviniae 1 53335 1 Pantoea 11 0 genus 43 2299 1 Pantoea rwandensis 1076550 125 0 species 3 2630326 418 no rank 0 0 species 169 592316 1 Pantoea sp. At-9b 115 0 species 1 Pantoea sp. PSNIH1 1484158 species 0 134 1484157 Pantoea sp. PSNIH2 1 species 0 167 66269 Pantoea stewartii 1 1235990 Candidatus Pantoea carbekii 1 species 0 546 470934 1 Pantoea vagans 0 species 360 252 species 0 1 Pantoea ananatis 553 1891675 Pantoea alhagi 1 0 species 144 1 1654067 244 0 species group 549 1 Pantoea agglomerans species 0 244 32199 1 Buchnera 2 genus 0 28 8097 8069 species 0 1 Buchnera aphidicola 9 genus 0 1 180 82986 1 Tatumella 2 53336 1 Tatumella citrea species 0 179 8 Erwinia 551 1 1190 0 genus 28 0 species 147 79967 Erwinia pyrifoliae 1 0 no rank 114 2622719 1 114 species 0 Erwinia sp. Ejp617 1 215689 Erwinia amylovora 1 552 127 species 0 136 species 0 Erwinia tasmaniensis 1 338565 188 0 species 1 Erwinia billingiae 182337 138 0 species Erwinia gerundensis 1 1619313 312 species 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 1922217 2 451511 218 0 no rank 218 2 0 genus 2 Plesiomonas 1 702 703 Plesiomonas shigelloides 1 species 0 216 17 0 family 6178 1 1903412 Hafniaceae 14 Hafnia 3 568 1 581 genus 0 6 152 no rank 0 1 2621980 species 0 152 1848580 1 Hafnia sp. CBA7124 species 0 423 569 Hafnia alvei 1 5429 37 genus 0 Edwardsiella 8 1 635 67780 Edwardsiella ictaluri 1 species 0 199 Edwardsiella piscicida 1 1263550 166 0 species 636 Edwardsiella tarda 1 species 0 4346 species 0 203 1821960 Edwardsiella anguillarum 1 no rank 0 387 2676541 2 species 0 188 1578828 1 Edwardsiella sp. EA181011 0 species 199 1650654 Edwardsiella sp. LADL05-105 1 93378 1 Edwardsiella hoshinae 0 species 91 2 Obesumbacterium 1 82982 151 3 0 genus 82983 1 Obesumbacterium proteus 0 species 148 7 0 order 20623 1 72273 Thiotrichales 35 29 0 family 14186 1 34064 Francisellaceae 14 1 1869285 769 0 genus 0 species 769 594679 Allofrancisella guangzhouensis 1 Francisella 12 1 262 13388 125 genus 0 species 0 756 622488 Francisella hispaniensis 1 2610885 2 no rank 0 1629 475375 Francisella sp. MA067296 1 species 0 712 0 species 917 1547445 1 Francisella sp. FSC1006 Francisella sp. CA97-1460 1 1542390 967 species 0 0 species 978 573570 1 Francisella sp. TX077310 0 species 1288 657445 1 Francisella noatunensis Francisella halioticida 1 549298 1813 0 species 1972 0 species 1 Francisella philomiragia 28110 954 Francisella persica 1 species 0 698 573569 Francisella sp. TX077308 1 0 species 754 species 0 2408 263 Francisella tularensis 1 0 family 35 4924 135616 1 Piscirickettsiaceae 15 1237 1 2 Piscirickettsia genus 0 1 916 1 Piscirickettsia salmonis 1238 915 0 species 1 40222 Methylophaga 3 20 genus 0 821 428 species 0 1 Methylophaga nitratireducenticrescens 754476 373 0 species 1 Methylophaga frappieri 754477 genus 0 5 521 933 1 Thiomicrospira 3 234 0 species 1 Thiomicrospira cyclica 147268 92245 1 Thiomicrospira aerophila 0 species 282 0 genus 3 353 28884 1 Hydrogenovibrio 2 species 0 350 39765 1 Hydrogenovibrio crunogenus 34067 1 4 Cycloclasticus genus 0 45 2278 1466 no rank 0 2 2621467 species 0 766 385025 Cycloclasticus sp. P1 1 728003 Cycloclasticus sp. PY97N 1 0 species 700 species 0 767 1329899 1 Cycloclasticus zancles 1506 family 0 15 Thiotrichaceae 5 135617 1 Beggiatoa 2 1 1021 766 2 genus 0 species 0 764 288004 1 Beggiatoa leptomitoformis 725 5 genus 0 Thioploca 2 1 40751 species 0 720 40754 Thioploca ingrica 1 511 0 no rank 2 33811 283 species 0 gamma proteobacterium HdN1 1 83406 1248727 1 endosymbiont of unidentified scaly snail isolate Monju 0 species 228 1 72274 Pseudomonadales 128 125 order 0 46874 26747 0 family 174 Pseudomonadaceae 85 135621 1 745 0 genus 25591 1 286 80 Pseudomonas 157782 1 Pseudomonas parafulva species 0 329 157783 Pseudomonas cremoricolorata 1 0 species 136 3254 0 species group 6 136841 287 Pseudomonas aeruginosa 1 species 0 1346 300 1 Pseudomonas mendocina species 0 757 238 0 species 1 Pseudomonas alcaligenes 43263 53412 Pseudomonas resinovorans 1 0 species 245 species 0 353 53408 1 Pseudomonas citronellolis 1232139 1 species subgroup 0 315 0 species 315 1149133 1 Pseudomonas furukawaii 270 0 species Pseudomonas cerasi 1 1583341 1633 0 species group 2 136846 1 578833 1454 0 species subgroup 1 Pseudomonas stutzeri 316 1454 0 species 179 0 species Pseudomonas balearica 1 74829 65741 1 Pseudomonas knackmussii 0 species 200 312306 Pseudomonas entomophila 1 species 0 142 216142 1 Pseudomonas rhizosphaerae species 0 139 0 species group 3644 136845 6 Pseudomonas monteilii 1 76759 487 species 0 47880 1 Pseudomonas fulva species 0 249 2063 0 species Pseudomonas putida 1 303 species 0 499 78327 1 Pseudomonas mosselii 70775 Pseudomonas plecoglossicida 1 0 species 123 species 0 223 47885 Pseudomonas oryzihabitans 1 species group 0 3842 136843 9 0 species 139 47879 Pseudomonas corrugata 1 108 species 0 1 Pseudomonas poae 200451 47878 Pseudomonas azotoformans 1 species 0 394 2274 species 0 1 Pseudomonas fluorescens 294 317 0 species 1 Pseudomonas trivialis 200450 76761 Pseudomonas veronii 1 species 0 128 234 species 0 Pseudomonas protegens 1 380021 species 0 144 75612 1 Pseudomonas mandelii 0 species 104 76758 Pseudomonas orientalis 1 species 0 337 930166 Pseudomonas brassicacearum 1 156 0 species Pseudomonas alkylphenolica 1 237609 0 species 117 244566 Pseudomonas lurida 1 198620 1 Pseudomonas koreensis species 0 348 196821 30 0 no rank 5165 Pseudomonas sp. ATCC 13867 1 1294143 220 0 species 143 species 0 1 Pseudomonas sp. Os17 1500686 2018067 1 Pseudomonas sp. FDAARGOS_380 0 species 122 1981174 Pseudomonas sp. M30-35 1 species 0 239 1 Pseudomonas sp. MYb193 1827300 105 species 0 1259844 1 Pseudomonas sp. FGI182 0 species 103 129 species 0 Pseudomonas sp. CCOS 191 1 1649877 2067572 Pseudomonas sp. NC02 1 0 species 157 0 species 139 2083055 1 Pseudomonas sp. LH1G9 1028989 1 Pseudomonas sp. StFLB209 0 species 178 135 species 0 Pseudomonas sp. HLS-6 1 2049589 Pseudomonas sp. GR 6-02 1 1659194 154 0 species Pseudomonas sp. CC6-YY-74 1 1930532 360 species 0 species 0 169 2083052 Pseudomonas sp. SWI36 1 1 Pseudomonas sp. XWY-1 2069256 143 species 0 species 0 308 1415630 Pseudomonas sp. TKP 1 1856685 Pseudomonas sp. TCU-HL1 1 species 0 150 0 species 135 69328 Pseudomonas sp. VLB120 1 0 species 157 1534110 1 Pseudomonas sp. DR 5-09 128 species 0 Pseudomonas sp. UW4 1 1207075 species 0 142 1500687 1 Pseudomonas sp. St29 239 species 0 Pseudomonas sp. S-6-2 1 1931241 0 species 193 1898684 1 Pseudomonas sp. LPH1 species 0 317 1283291 Pseudomonas sp. URMO17WK12:I11 1 148 0 species Pseudomonas sp. PONIH3 1 1636610 Pseudomonas sp. JY-Q 1 1338689 148 0 species 2083054 1 Pseudomonas sp. LG1D9 species 0 148 149 species 0 Pseudomonas sp. SWI6 1 2083051 0 species 133 2083053 1 Pseudomonas sp. SWI44 Pseudomonas sp. MRSN12121 1 1611770 174 species 0 species 0 97 219572 1 Pseudomonas antarctica Pseudomonas psychrotolerans 1 237610 240 species 0 0 species 264 1853130 Pseudomonas silesiensis 1 101564 Pseudomonas alcaliphila 1 species 0 206 species group 0 2619 136849 8 0 species subgroup 426 251698 2 29438 Pseudomonas savastanoi 1 species 0 246 180 0 species Pseudomonas amygdali 1 47877 species 0 144 36746 1 Pseudomonas cichorii Pseudomonas viridiflava 1 33069 119 0 species no rank 0 152 2775504 1 Pseudomonas sp. Lz4W 1 1206777 152 0 species 1 251695 1229 0 species subgroup species 0 1229 317 1 Pseudomonas syringae 251701 1 Pseudomonas syringae group genomosp. 3 0 species 400 Pseudomonas avellanae 1 46257 149 0 species 1 Pseudomonas frederiksbergensis 104087 370 species 0 159 species 0 1 Pseudomonas versuta 1788301 1179 species group 0 2 136842 315 0 species 1 Pseudomonas fragi 296 0 species 864 587753 1 Pseudomonas chlororaphis 1 1849530 366 genus 0 1697053 1 Oblitimonas alkaliphila 0 species 366 subfamily 0 616 351 3 13 genus 0 616 1 352 Azotobacter 3 Azotobacter chroococcum 1 353 359 species 0 244 0 species 1 Azotobacter vinelandii 354 Moraxellaceae 42 1 468 20002 54 0 family 3173 68 0 genus Psychrobacter 11 1 497 317 species 0 Psychrobacter urativorans 1 45610 0 species 267 330922 Psychrobacter cryohalolentis 1 Psychrobacter alimentarius 1 261164 430 species 0 no rank 0 1826 196806 6 1028416 1 Psychrobacter sp. DAB_AL43B 0 species 286 448 0 species 1 Psychrobacter sp. PRwf-1 349106 1720344 Psychrobacter sp. AntiMn-1 1 0 species 286 species 0 270 571800 Psychrobacter sp. G 1 1 Psychrobacter sp. P11G5 1699624 281 species 0 1699622 Psychrobacter sp. P2G3 1 0 species 255 265 0 species 1 Psychrobacter arcticus 334543 13 genus 0 1564 1 475 Moraxella 5 34062 Moraxella osloensis 1 species 0 649 species 0 444 480 1 Moraxella catarrhalis 1 Moraxella bovoculi 386891 287 species 0 171 species 0 1 Moraxella ovis 29433 0 genus 209 15211 469 1 Acinetobacter 25 1 Acinetobacter soli 487316 355 0 species 1 202950 449 0 species strain 0 449 62977 Acinetobacter sp. ADP1 1 Acinetobacter schindleri 1 108981 390 0 species 764 0 species 1 Acinetobacter equi 1324350 400 0 species 1 Acinetobacter larvae 1789224 Acinetobacter haemolyticus 1 29430 529 species 0 351 species 0 1 Acinetobacter radioresistens 40216 526 species 0 Acinetobacter oleivorans 1 1148157 106648 Acinetobacter bereziniae 1 0 species 566 6823 0 species group 5 909768 48296 Acinetobacter pittii 1 species 0 2149 106654 Acinetobacter nosocomialis 1 species 0 794 1785128 1 Acinetobacter lactucae species 0 583 470 1 Acinetobacter baumannii 0 species 2309 0 species 988 471 1 Acinetobacter calcoaceticus species 0 701 40215 Acinetobacter junii 1 756892 1 Acinetobacter indicus 0 species 245 40214 1 Acinetobacter johnsonii species 0 315 2588 no rank 0 7 196816 1608473 Acinetobacter sp. NCu2D-2 1 species 0 332 Acinetobacter sp. ACNIH1 1 1636603 429 species 0 1758189 Acinetobacter sp. ACNIH2 1 species 0 415 Acinetobacter sp. TTH0-4 1 1646498 410 0 species 2079596 Acinetobacter sp. SWBY1 1 0 species 306 1808001 1 Acinetobacter sp. LoGeW2-3 0 species 296 1407071 Acinetobacter sp. TGL-Y2 1 0 species 400 4 order 0 616 1 1692040 Acidiferrobacterales 6 5 Acidiferrobacteraceae 1692041 1 612 family 0 6 2 Sulfuricaulis 1744881 1 239 0 genus 8 1620215 1 Sulfuricaulis limicola species 0 231 1 1692042 Sulfurifustis 2 3 genus 0 367 1675686 1 Sulfurifustis variabilis 0 species 364 Cellvibrionales 30 1 1706369 6509 20 order 0 32 0 family 1380 1 1706375 Spongiibacteraceae 7 Spongiibacter 2 1 630749 397 4 genus 0 1 2631504 393 no rank 0 species 0 393 1620392 Spongiibacter sp. IMCC21906 1 396 9 genus 0 Zhongshania 2 1 1434050 1 Zhongshania aliphaticivorans 1470434 387 0 species Oceanicoccus 2 1 1084558 555 3 0 genus Oceanicoccus sagamiensis 1 716816 552 species 0 1289 0 family 4 Microbulbiferaceae 5 1706373 1 Microbulbifer 4 48073 1 1285 0 genus 44 252514 Microbulbifer thermotolerans 1 species 0 393 0 species 447 1769779 1 Microbulbifer aggregans 401 0 species Microbulbifer agarilyticus 1 260552 1 1706371 Cellvibrionaceae 13 33 family 0 2850 Cellvibrio 4 1 10 968 7 genus 0 155077 1 Cellvibrio japonicus 0 species 299 2624793 2 no rank 0 662 334 species 0 Cellvibrio sp. PSBB006 1 1987723 Cellvibrio sp. PSBB023 1 1945512 328 0 species Teredinibacter 2 1 2425 373 1 genus 0 372 0 species Teredinibacter turnerae 1 2426 447467 1 Simiduia 2 0 genus 2 271 species 0 269 447471 1 Simiduia agarivorans genus 0 2 474 316625 1 2 Saccharophagus 1 Saccharophagus degradans 86304 472 species 0 1 2036021 Agarilytica 2 2 genus 0 731 0 species 729 1737490 1 Agarilytica rhodophyticola 1 1706372 Halieaceae 4 8 0 family 970 37 genus 0 962 1 1217416 3 Halioglobus 1 Halioglobus japonicus 930805 495 species 0 0 species 430 930806 Halioglobus pacificus 1 Legionellales 21 1 118969 10745 6 0 order 5 Coxiellaceae 1 118968 1387 18 0 family 134284 1 no rank 0 471 1592897 1 Coxiella-like endosymbiont 0 species 471 3 Coxiella 1 776 898 10 0 genus species 0 452 777 Coxiella burnetii 1 no rank 0 436 2676648 1 species 0 436 325775 Coxiella endosymbiont of Amblyomma americanum 1 15 Legionellaceae 444 1 9352 0 family 18 1 445 12 Legionella 56 genus 0 8845 631 species 0 1 Legionella waltersii 66969 Legionella fallonii 1 96230 710 species 0 407 species 0 Legionella lansingensis 1 45067 species 0 602 1867846 Legionella clemsonensis 1 1 Legionella longbeachae 450 800 species 0 297 0 species Legionella spiritensis 1 452 521 0 species Legionella oakridgensis 1 29423 Legionella endosymbiont of Polyplax serrata 1 2005262 813 species 0 species 0 650 449 Legionella hackeliae 1 0 species 859 28087 1 Legionella sainthelensi 446 Legionella pneumophila 1 species 0 2499 489 genus 0 2 Tatlockia 2 465 1 species 0 487 451 1 Tatlockia micdadei 31 Pasteurellales 135625 1 9203 order 0 18 65 0 family 9185 1 712 30 Pasteurellaceae Mannheimia 4 1 75984 921 6 0 genus 283 species 0 Mannheimia haemolytica 1 75985 Mannheimia varigena 1 85404 382 species 0 250 0 no rank 1 2645054 0 species 250 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 1 1643 0 genus 5 Pasteurella 3 745 1 747 Pasteurella multocida 1 species 0 1193 754 Pasteurella dagmatis 1 0 species 445 1 713 Actinobacillus 5 5 0 genus 766 species 0 250 715 Actinobacillus pleuropneumoniae 1 211 species 0 Actinobacillus suis 1 716 118 species 0 Actinobacillus succinogenes 1 67854 0 species 182 718 1 Actinobacillus equuli 1 476528 391 0 genus species 0 391 47735 Bibersteinia trehalosi 1 155493 1 Gallibacterium 2 0 genus 2 329 1 Gallibacterium anatis 750 327 species 0 573 2 genus 0 Histophilus 2 1 214906 0 species 571 731 Histophilus somni 1 6 Haemophilus 724 1 3204 0 genus 19 species 0 647 730 [Haemophilus] ducreyi 1 1 2609962 288 no rank 0 0 species 288 712310 Haemophilus sp. oral taxon 036 1 0 species 347 729 Haemophilus parainfluenzae 1 1 Haemophilus influenzae 727 1695 0 species Haemophilus pittmaniae 1 249188 208 species 0 Basfia 2 1 697331 159 5 0 genus 154 species 0 [Mannheimia] succiniciproducens 1 157673 1 2094023 574 0 genus Glaesserella parasuis 1 738 574 0 species 1 genus 0 560 1 416916 Aggregatibacter 3 290 species 0 Aggregatibacter aphrophilus 1 732 269 species 0 Aggregatibacter actinomycetemcomitans 1 714 135615 3 order 0 271 271 5 0 family 3 Cardiobacteriaceae 1 868 4 genus 0 266 1 869 Dichelobacter 2 870 1 Dichelobacter nodosus species 0 262 309 class 0 5 580370 309 3 order 0 Mariprofundales 5 1 580371 306 family 0 1 Mariprofundaceae 4 580372 1 305 9 0 genus Mariprofundus 3 1 377315 species 0 141 1921086 1 Mariprofundus aestuarium 155 species 0 1 Mariprofundus ferrinatatus 1921087 1 28216 341 Betaproteobacteria 68 class 0 80214 1 32003 43 Nitrosomonadales 40 order 0 5699 2 family 0 126 1 2008790 Thiobacillaceae 3 1 919 2 Thiobacillus 9 genus 0 124 36861 Thiobacillus denitrificans 1 0 species 115 90627 1 Gallionellaceae 5 family 0 11 320 153 1 0 genus Gallionella 2 1 96 1 Gallionella capsiferriformans 370405 152 0 species 314343 1 Sideroxydans 2 0 genus 5 156 151 species 0 Sideroxydans lithotrophicus 1 63745 294 family 0 4 2772226 Sulfuricella 2 1 935200 157 3 genus 0 species 0 154 649841 Sulfuricella denitrificans 1 1 0 genus 137 1 1778653 Sulfuriferula 2 2637784 1 no rank 0 136 0 species 136 1985873 Sulfuriferula sp. AH1 1 5 family 0 310 1 2008793 Sterolibacteriaceae 5 genus 0 1 133 378210 1 Methyloversatilis 2 2639971 1 no rank 0 132 species 0 132 1842540 1 Methyloversatilis sp. RAC08 Sulfuritalea 2 1 1054211 172 1 genus 0 species 0 171 748811 Sulfuritalea hydrogenivorans 1 2239 13 0 family Methylophilaceae 13 1 32011 988 genus 0 10 Candidatus Methylopumilus 3 1679002 1 0 species 709 1581557 Candidatus Methylopumilus planktonicus 1 269 species 0 Candidatus Methylopumilus turicensis 1 1581680 1 359407 3 Methylotenera 15 0 genus 645 359408 Methylotenera mobilis 1 0 species 241 species 0 389 1055487 1 Methylotenera versatilis Methylovorus 3 1 81682 302 9 0 genus 266009 1 Methylovorus glucosotrophus species 0 145 1 2634027 148 no rank 0 887061 1 Methylovorus sp. MP688 0 species 148 141 0 genus 2 Methylobacillus 2 404 1 0 species 139 405 Methylobacillus flagellatus 1 150 0 genus 1 16 1 2630143 150 0 no rank species 0 150 1662285 1 Methylophilus sp. TWE2 1 206379 12 Nitrosomonadaceae 8 family 0 2370 35798 1 Nitrosospira 4 genus 0 5 360 species 0 99 35799 Nitrosospira briensis 1 1288494 1 Nitrosospira lacus 0 species 131 Nitrosospira multiformis 1 1231 125 0 species 2002 genus 0 13 Nitrosomonas 7 914 1 44577 Nitrosomonas ureae 1 0 species 350 273 species 0 Nitrosomonas eutropha 1 916 447 0 species 1 Nitrosomonas communis 44574 Nitrosomonas europaea 1 915 135 species 0 2 2609265 784 0 no rank 443 0 species Nitrosomonas sp. AL212 1 153948 261292 1 Nitrosomonas sp. Is79A3 0 species 341 order 0 37 4977 206351 1 Neisseriales 36 0 family 17 3401 481 1 Neisseriaceae 22 59 1 3 Vitreoscilla 0 genus 4 365 no rank 0 250 2627922 1 250 0 species Vitreoscilla sp. C1 1 96942 Vitreoscilla filiformis 1 63 111 0 species 1 71 271 0 genus 271 species 0 Simonsiella muelleri 1 72 Neisseria 12 1 482 1682 29 0 genus Neisseria elongata 1 495 92 0 species 0 species 117 1853278 1 Neisseria sp. 10023 0 species 465 487 Neisseria meningitidis 1 486 Neisseria lactamica 1 0 species 146 1 Neisseria weaveri 28091 170 0 species species 0 95 488 Neisseria mucosa 1 0 no rank 238 2623750 2 119 species 0 Neisseria sp. 10022 1 1853276 Neisseria sp. KEM232 1 655307 119 0 species 133 0 species 1 Neisseria gonorrhoeae 485 82 0 species 1 Neisseria sicca 490 Neisseria zoodegmatis 1 326523 115 species 0 Eikenella 2 1 538 109 2 genus 0 1 Eikenella corrodens 539 107 0 species Snodgrassella 2 1 1193515 407 1 genus 0 0 species 406 1196083 1 Snodgrassella alvi 550 0 no rank 1 421605 550 species 0 1 Neisseriaceae bacterium DSM 100970 2052837 1539 26 0 family 13 Chromobacteriaceae 1 1499392 2 Jeongeupia 1 885864 167 8 0 genus 2619593 1 0 no rank 159 1 Jeongeupia sp. USM3 1906741 159 species 0 568394 1 Pseudogulbenkiania 2 0 genus 3 151 no rank 0 148 2642558 1 1 Pseudogulbenkiania sp. NH8B 748280 148 0 species 4 90153 856 0 no rank Chromobacterium 4 1 535 856 17 genus 0 237 0 species Chromobacterium violaceum 1 536 191 no rank 0 1 2641838 2059672 1 Chromobacterium sp. ATCC 53434 0 species 191 1108595 1 Chromobacterium vaccinii species 0 411 168470 1 2 Laribacter genus 0 4 180 species 0 176 168471 Laribacter hongkongensis 1 genus 0 3 159 187 1 Aquaspirillum 2 1 2620219 156 0 no rank 1 Aquaspirillum sp. LM1 1938604 156 0 species 0 order 527 62080 80840 1 Burkholderiales 227 2 80841 339 no rank 0 species 0 132 1469502 1 Burkholderiales bacterium GJ-E10 1834205 1 Burkholderiales bacterium YL45 0 species 207 0 family 44 8876 506 1 Alcaligenaceae 40 1 1472344 Basilea 2 2 0 genus 334 1472345 1 Basilea psittacipulmonis 0 species 332 Paenalcaligenes 2 1100891 1 242 0 genus 3 1 Paenalcaligenes hominis 643674 239 species 0 1 1921582 Orrella 2 1 genus 0 167 species 0 166 1851544 1 Orrella dioscoreae 3 Taylorella 29574 1 1050 genus 0 1 508 0 species 1 Taylorella asinigenitalis 84590 541 species 0 Taylorella equigenitalis 1 29575 507 1 genus 0 747 species 0 747 511 Alcaligenes faecalis 1 3 Advenella 1 290425 359 4 0 genus 196 0 species 1 Advenella mimigardefordensis 302406 310575 Advenella kashmirensis 1 species 0 159 305976 1 genus 0 245 245 no rank 0 1 2640016 245 0 species Pusillimonas sp. T7-7 1 1007105 222 1 Achromobacter 6 0 genus 46 2130 217204 1 Achromobacter insolitus 0 species 208 2626865 1 0 no rank 237 Achromobacter sp. AONIH1 1 1758194 237 species 0 85698 Achromobacter xylosoxidans 1 species 0 868 1 Achromobacter denitrificans 32002 427 species 0 0 species 344 217203 Achromobacter spanius 1 genus 0 66 3197 517 1 17 Bordetella 186 species 0 1 Bordetella flabilis 463014 103855 1 Bordetella hinzii species 0 169 520 Bordetella pertussis 1 0 species 248 0 species 246 1416806 1 Bordetella genomosp. 8 species 0 170 463025 1 Bordetella bronchialis no rank 0 151 2630031 1 151 species 0 Bordetella sp. H567 1 1697043 0 species 148 1416803 1 Bordetella genomosp. 9 159 0 species 1 Bordetella trematum 123899 species 0 129 35814 Bordetella holmesii 1 0 species 220 519 Bordetella parapertussis 1 0 species 167 1331258 1 Bordetella pseudohinzii 113 species 0 1 Bordetella avium 521 463024 Bordetella genomosp. 6 1 0 species 245 0 species 193 463040 1 Bordetella genomosp. 13 1 Bordetella petrii 94624 176 species 0 518 1 Bordetella bronchiseptica 0 species 411 1 90243 210 0 genus 1 Oligella urethralis 90245 210 species 0 0 genus 151 359336 1 75697 1 Castellaniella defragrans species 0 151 11092 family 0 93 Comamonadaceae 55 80864 1 165 genus 0 6 2 Melaminivora 1649468 1 159 0 no rank 1 2641902 159 species 0 Melaminivora sp. SC2-9 1 2109913 2490452 2 genus 0 284 1 Comamonadaceae bacterium A1 1458425 123 0 species species 0 161 1458426 1 Comamonadaceae bacterium B1 120 0 genus 1 352450 1 Simplicispira sp. SC1-8 2109915 120 species 0 1436289 1 0 genus 170 Candidatus Symbiobacter mobilis 1 1436290 170 species 0 genus 0 3 137 238749 1 Diaphorobacter 2 0 species 134 1546149 Diaphorobacter polyhydroxybutyrativorans 1 7 genus 0 306 1 219181 3 Ottowia 139 0 no rank 1 2645081 1658672 1 Ottowia sp. oral taxon 894 species 0 139 2109914 1 Ottowia sp. KADR8-3 species 0 160 Hydrogenophaga 4 1 47420 609 7 0 genus 233 species 0 Hydrogenophaga crassostreae 1 1763535 2 2610897 369 no rank 0 0 species 179 795665 Hydrogenophaga sp. PBC 1 190 species 0 Hydrogenophaga sp. RAC07 1 1842537 Variovorax 5 1 34072 2236 26 genus 0 0 species 269 436515 1 Variovorax boronicumulans 663 0 no rank 2 663243 293 0 species 1 Variovorax sp. PMC12 2126319 0 species 370 1795631 Variovorax sp. PAMC 28711 1 1 Variovorax paradoxus 34073 1278 0 species Ramlibacter 2 1 174951 323 2 genus 0 0 species 321 94132 1 Ramlibacter tataouinensis genus 0 1 257 665874 1 Limnohabitans 3 2 2626134 256 0 no rank 127 species 0 Limnohabitans sp. 103DPR2 1 1678129 1678128 1 Limnohabitans sp. 63ED37-2 species 0 129 Acidovorax 9 1 12916 1520 42 genus 0 0 species 154 721785 Acidovorax ebreus 1 4 2684926 710 no rank 0 species 0 141 232721 Acidovorax sp. JS42 1 200 species 0 1 Acidovorax sp. KKS102 358220 0 species 155 1842533 Acidovorax sp. RAC01 1 214 species 0 1 Acidovorax sp. T1 1858609 553814 Acidovorax sp. NA3 1 species 0 126 211 0 species Acidovorax citrulli 1 80869 80867 1 Acidovorax avenae 0 species 277 1105 3 genus 0 4 Comamonas 1 283 1082851 Comamonas serinivorans 1 0 species 415 species 0 377 285 Comamonas testosteroni 1 310 0 species 1 Comamonas kerstersii 225992 1 2678886 153 0 genus 2116657 1 Melaminivora sp. SC2-7 species 0 153 1235 21 genus 0 Delftia 5 1 80865 80866 1 Delftia acidovorans 0 species 287 180282 1 Delftia tsuruhatensis species 0 270 657 0 no rank 2 2613839 365 species 0 1 Delftia sp. Cs1-4 742013 1920191 Delftia sp. HK171 1 0 species 292 452 genus 0 1 364316 364317 Verminephrobacter eiseniae 1 species 0 452 739 3 0 genus 5 Rhodoferax 1 28065 1842727 Rhodoferax koreense 1 species 0 236 144 0 species Rhodoferax saidenbachensis 1 1484693 1 Rhodoferax ferrireducens 192843 159 0 species Rhodoferax antarcticus 1 81479 197 0 species 0 genus 214 201096 1 214 species 0 1 Alicycliphilus denitrificans 179636 974 2 genus 0 3 Polaromonas 1 52972 2638319 1 0 no rank 680 296591 1 Polaromonas sp. JS666 0 species 680 species 0 292 216465 Polaromonas naphthalenivorans 1 33 family 0 5346 1 75682 28 Oxalobacteraceae 0 genus 12 1399 963 1 6 Herbaspirillum 964 1 Herbaspirillum seropedicae 0 species 375 2624150 1 no rank 0 212 212 species 0 1 Herbaspirillum sp. meg3 2025949 405 0 species 1 Herbaspirillum hiltneri 341045 1 Herbaspirillum rubrisubalbicans 80842 191 0 species Herbaspirillum frisingense 1 92645 204 species 0 0 genus 33 1263 149698 1 6 Massilia species 0 230 2045208 Massilia sp. B2 1 476 0 no rank 2 2609279 1707785 Massilia sp. WG5 1 species 0 241 235 0 species Massilia sp. NR 4-1 1 1678028 1 Massilia putida 1141883 259 0 species 265 species 0 1 Massilia sp. ZMN-3 2072590 4 Collimonas 202907 1 934 genus 0 18 322 0 species 1 Collimonas arenae 279058 Collimonas pratensis 1 279113 287 0 species 1 Collimonas fungivorans 158899 307 0 species 1 303379 Herminiimonas 3 2 genus 0 338 Herminiimonas arsenicoxydans 1 204773 171 species 0 1809410 1 Herminiimonas arsenitoxidans 0 species 165 1236 0 genus 32 7 Janthinobacterium 29580 1 0 species 265 368607 1 Janthinobacterium svalbardensis Janthinobacterium agaricidamnosum 1 55508 185 0 species 4 2610881 754 no rank 0 1 Janthinobacterium sp. Marseille 375286 134 0 species 1 Janthinobacterium sp. B9-8 1236179 201 0 species 176 species 0 Janthinobacterium sp. LM6 1 1938606 243 species 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1 1644131 846 1 0 genus 143 1 Oxalobacter formigenes 847 143 species 0 no rank 0 2743 224471 17 Paucibacter 2 318147 1 313 0 genus 1 0 no rank 312 2642959 1 1 Paucibacter sp. KCTC 42545 1768242 312 species 0 413882 [Polyangium] brachysporum 1 species 0 384 Rubrivivax 2 1 28067 298 6 genus 0 1 Rubrivivax gelatinosus 28068 292 0 species 1 32012 Thiomonas 2 8 genus 0 260 252 species 0 1 Thiomonas intermedia 926 4 genus 0 233 1 316612 2 Methylibium 229 0 species 1 Methylibium petroleiphilum 105560 93681 1 Roseateles 2 genus 0 3 446 1 Roseateles depolymerans 76731 443 species 0 2 Rhizobacter 1 212743 280 1 genus 0 1 Rhizobacter gummiphilus 946333 279 0 species 2 Mitsuaria 1 65047 304 4 0 genus 1 2648776 300 0 no rank 1658665 1 Mitsuaria sp. 7 species 0 300 0 genus 2 225 88 1 2 Leptothrix 1 Leptothrix cholodnii 34029 223 0 species 118 0 family 33157 1 119060 Burkholderiaceae 84 Polynucleobacter 4 1 44013 1035 9 genus 0 1 Polynucleobacter asymbioticus 576611 483 0 species Polynucleobacter duraquae 1 1835254 305 0 species species 0 238 576610 Polynucleobacter necessarius 1 genus 0 57 3821 1822464 1 12 Paraburkholderia 0 species 273 948107 1 Paraburkholderia sprentiae 311230 1 Paraburkholderia terrae species 0 285 269 species 0 1 Paraburkholderia fungorum 134537 2615204 1 no rank 0 303 species 0 303 1926494 1 Paraburkholderia sp. SOS3 1 Paraburkholderia phytofirmans 261302 579 species 0 Paraburkholderia hospita 1 169430 344 species 0 600 species 0 Paraburkholderia caribensis 1 75105 species 0 252 2026199 1 Paraburkholderia aromaticivorans 296 0 species 1 Paraburkholderia xenovorans 36873 0 species 301 148447 1 Paraburkholderia phymatum 262 0 species 1 Paraburkholderia phenoliruptrix 252970 0 genus 138 2571159 1 Paraburkholderia rhizoxinica 1 412963 138 0 species 0 genus 34 2696 93217 1 Pandoraea 10 species 0 208 93218 1 Pandoraea apista 153 species 0 1 Pandoraea sputorum 93222 Pandoraea vervacti 1 656178 181 0 species 174 0 species 1 Pandoraea faecigallinarum 656179 Pandoraea norimbergensis 1 93219 342 species 0 93220 Pandoraea pnomenusa 1 species 0 290 445709 Pandoraea thiooxydans 1 species 0 135 0 species 273 573737 Pandoraea oxalativorans 1 Pandoraea pulmonicola 1 93221 906 0 species 18 0 genus 1827 1 48736 Ralstonia 5 185 species 0 1 Ralstonia insidiosa 190721 species 0 999 305 1 Ralstonia solanacearum species 0 237 105219 Ralstonia mannitolilytica 1 329 Ralstonia pickettii 1 0 species 388 0 genus 285 1827195 1 1 Burkholderia sp. RPE64 758793 285 species 0 1 32008 41 Burkholderia 562 0 genus 19465 651 0 species Burkholderia glumae 1 337 6775 0 species group 7 111527 1637837 Burkholderia sp. MSMB0266 1 0 species 299 57975 1 Burkholderia thailandensis 0 species 709 28450 Burkholderia pseudomallei 1 species 0 3820 1 Burkholderia sp. MSMB0852 1637841 434 0 species 1637831 1 Burkholderia sp. MSMB617WGS species 0 324 1 Burkholderia mallei 13373 630 species 0 Burkholderia oklahomensis 1 342113 559 species 0 1 Burkholderia gladioli 28095 537 species 0 41899 1 Burkholderia plantarii 0 species 316 11 2613784 2544 no rank 0 Burkholderia sp. YI23 1 1097668 306 species 0 1 Burkholderia sp. HB1 1678678 313 0 species 268 0 species Burkholderia sp. CCGE1003 1 640512 species 0 201 1740163 1 Burkholderia sp. Bp7605 303 species 0 1 Burkholderia sp. RPE67 758796 1 Burkholderia sp. Bp5365 1740162 193 species 0 157 species 0 1 Burkholderia sp. PAMC 26561 1795043 1 Burkholderia sp. 2002721687 1468409 168 species 0 640510 Burkholderia sp. CCGE1001 1 0 species 263 1795874 1 Burkholderia sp. PAMC 28687 0 species 167 416344 1 Burkholderia sp. KJ006 species 0 205 19 87882 8080 species group 0 1 Burkholderia diffusa 488732 185 0 species 493 0 species Burkholderia multivorans 1 87883 species 0 1275 292 1 Burkholderia cepacia 152500 Burkholderia dolosa 1 0 species 201 265293 1 [Pseudomonas] mesoacidophila 0 species 168 1 Burkholderia vietnamiensis 60552 503 0 species 0 species 190 60550 1 Burkholderia pyrrocinia 449 species 0 1 Burkholderia latens 488446 95485 Burkholderia stabilis 1 species 0 355 1 Burkholderia cenocepacia 95486 1080 species 0 0 species 239 1503054 Burkholderia stagnalis 1 101571 1 Burkholderia ubonensis species 0 692 488729 Burkholderia metallica 1 0 species 190 776 species 0 Burkholderia lata 1 482957 488447 1 Burkholderia contaminans 0 species 271 0 species 178 1503055 Burkholderia territorii 1 0 species 199 1207504 Burkholderia pseudomultivorans 1 0 species 401 152480 1 Burkholderia ambifaria 488731 Burkholderia seminalis 1 0 species 235 3772 0 genus 66 Cupriavidus 9 106589 1 1 Cupriavidus necator 106590 366 0 species 0 species 445 367825 1 Cupriavidus sp. USMAA1020 772 species 0 Cupriavidus metallidurans 1 119219 2640874 2 0 no rank 1045 1 Cupriavidus sp. USMAHM13 1389192 465 0 species 580 species 0 1 Cupriavidus sp. USMAA2-4 876364 1 Cupriavidus gilardii 82541 272 species 0 species 0 226 248026 Cupriavidus pinatubonensis 1 580 species 0 Cupriavidus basilensis 1 68895 119066 11 no rank 0 4427 145 genus 0 1 1301080 1 Candidatus Nasuia deltocephalinicola 1160784 145 0 species 0 genus 39 189384 1 39 species 0 Candidatus Tremblaya princeps 1 189385 33055 1 Kinetoplastibacterium 6 0 genus 20 3425 Candidatus Kinetoplastibacterium crithidii 1 33056 847 0 species 994695 Candidatus Kinetoplastibacterium galatii 1 species 0 523 species 0 666 994696 Candidatus Kinetoplastibacterium oncopeltii 1 1 Candidatus Kinetoplastibacterium desouzaii 994692 856 species 0 513 0 species Kinetoplastibacterium blastocrithidii 1 233181 genus 0 1 173 327159 1 Candidatus Accumulibacter 2 species 0 172 327160 1 Candidatus Accumulibacter phosphatis 645 0 genus 1 1381133 669502 1 Candidatus Profftella armatura species 0 645 428 0 no rank 2 33809 Betaproteobacteria bacterium GR16-43 1 1904640 189 0 species 543913 beta proteobacterium CB 1 species 0 239 206389 1 21 Rhodocyclales 0 order 32 2535 Rhodocyclaceae 5 75787 1 513 family 0 9 no rank 0 129 75788 1 129 0 species Rhodocyclaceae bacterium 1 1898103 185 2 0 genus Aromatoleum 2 1 551759 1 Aromatoleum aromaticum 551760 183 0 species 190 0 genus 1 146937 146939 1 Azospira oryzae 0 species 190 family 0 1 171 2008795 1 3 Azonexaceae 1 0 genus 170 1 73029 Dechloromonas 2 259537 1 Dechloromonas aromatica 0 species 169 1 2008794 Zoogloeaceae 12 31 0 family 1819 0 genus 18 869 12960 1 Azoarcus 5 2 2629479 488 0 no rank 0 species 257 198107 Azoarcus sp. CIB 1 748247 1 Azoarcus sp. KH32C species 0 231 1 Azoarcus olearius 418699 178 0 species 185 species 0 1 Azoarcus sp. SY39 2067960 33057 1 Thauera 6 0 genus 35 919 1134435 Thauera humireducens 1 0 species 165 0 no rank 416 2609274 2 2005884 1 Thauera sp. K11 species 0 178 Thauera sp. MZ1T 1 85643 238 species 0 59405 1 Thauera aromatica 0 species 143 160 0 species Thauera chlorobenzoica 1 96773 68525 191 subphylum 0 56958 Deltaproteobacteria 120 28221 1 21269 class 0 26 20 0 order 2744 1 213118 Desulfobacterales 19 213119 1 Desulfobacteraceae 10 family 0 16 1859 2295 1 2 Desulfobacterium 0 genus 5 229 2296 1 Desulfobacterium autotrophicum 0 species 224 646 1 0 genus Desulfobacula 2 1 28222 28223 Desulfobacula toluolica 1 0 species 645 1 218207 2 Desulfatibacillum 6 0 genus 614 608 0 species 1 Desulfatibacillum alkenivorans 259354 354 2 0 genus Desulfococcus 3 1 896 Desulfococcus oleovorans 1 181663 222 species 0 Desulfococcus multivorans 1 897 130 species 0 1 213121 Desulfobulbaceae 8 12 0 family 865 120 6 0 genus Desulfobulbus 2 1 893 114 0 species 1 Desulfobulbus sp. ORNL 1986146 109 0 genus 1 427922 1 Desulfurivibrio alkaliphilus 427923 109 species 0 0 genus 1 326 53318 1 Desulfocapsa 2 Desulfocapsa sulfexigens 1 65555 325 species 0 2 Desulfotalea 1 109168 298 10 0 genus 1 Desulfotalea psychrophila 84980 288 0 species Syntrophobacterales 11 1 213462 545 4 order 0 413 1 family 0 Syntrophaceae 7 1 213468 60892 1 Desulfobacca 2 0 genus 5 118 60893 1 Desulfobacca acetoxidans species 0 113 119 0 genus 1 Syntrophus 2 43773 1 Syntrophus aciditrophicus 1 316277 118 species 0 1 2357 Desulfomonile 2 3 genus 0 175 172 species 0 Desulfomonile tiedjei 1 2358 213465 1 3 Syntrophobacteraceae 0 family 1 128 2 0 genus 127 1 29526 2 Syntrophobacter species 0 125 119484 1 Syntrophobacter fumaroxidans 213115 1 Desulfovibrionales 22 order 0 34 3078 0 family 103 213117 1 1 45662 103 genus 0 Desulfohalobium retbaense 1 45663 103 0 species 1 194924 Desulfovibrionaceae 17 24 family 0 2724 1 41707 697 genus 0 0 species 697 29546 Lawsonia intracellularis 1 872 1 9 Desulfovibrio genus 0 17 1295 Candidatus Desulfovibrio trichonymphae 1 1725232 53 species 0 species 0 76 44742 Desulfovibrio fairfieldensis 1 78 no rank 0 1 2593640 1 Desulfovibrio sp. G11 631220 78 species 0 152 0 species Desulfovibrio alaskensis 1 58180 species 0 378 881 Desulfovibrio vulgaris 1 263 0 species Desulfovibrio magneticus 1 184917 901 1 Desulfovibrio piger species 0 63 1 Desulfovibrio desulfuricans 876 215 species 0 126 genus 0 1 2582840 873 Desulfovibrio africanus 1 species 0 126 0 genus 211 2794998 1 Desulfovibrio salexigens 1 880 211 species 0 1 2035811 Pseudodesulfovibrio 4 3 0 genus 371 112 0 species Pseudodesulfovibrio indicus 1 1716143 1 Pseudodesulfovibrio aespoeensis 182210 137 species 0 57320 Pseudodesulfovibrio profundus 1 0 species 119 217 0 family 3 213116 4 0 genus 217 1 898 Desulfomicrobium 3 1 Desulfomicrobium baculatum 899 126 0 species 132132 Desulfomicrobium orale 1 species 0 87 1 29 Myxococcales 35 105 0 order 10165 suborder 0 5751 80811 24 Myxococcaceae 9 31 1 2521 0 family 11 1756 58 genus 0 Myxococcus 5 1 32 species 0 353 83455 1 Myxococcus stipitatus 34 1 Myxococcus xanthus species 0 287 Myxococcus hansupus 1 1297742 319 0 species 0 species 739 33 1 Myxococcus fulvus Corallococcus 3 1 83461 754 14 genus 0 324 species 0 1 Myxococcus macrosporus 35 416 species 0 Corallococcus coralloides 1 184914 996 7 family 0 5 Anaeromyxobacteraceae 1 1524215 4 Anaeromyxobacter 161492 1 989 genus 0 12 1 Anaeromyxobacter dehalogenans 161493 419 species 0 2620896 2 0 no rank 558 1 Anaeromyxobacter sp. K 447217 250 species 0 1 Anaeromyxobacter sp. Fw109-5 404589 308 species 0 Vulgatibacteraceae 3 1524213 1 221 family 0 1 1524214 1 Vulgatibacter 2 0 genus 4 220 1 Vulgatibacter incomptus 1391653 216 0 species Archangiaceae 7 1 39 2013 31 family 0 Stigmatella 2 1 40 245 2 genus 0 species 0 243 41 Stigmatella aurantiaca 1 1 44 337 0 genus species 0 337 83453 Melittangium boletus 1 994 genus 0 1 47 0 species 994 48 Archangium gephyra 1 1 genus 0 406 1 42 Cystobacter 2 species 0 405 43 1 Cystobacter fuscus 0 suborder 3462 80812 7 1 49 Polyangiaceae 4 8 0 family 2889 Sorangium 2 1 39643 2402 1 0 genus 2401 species 0 Sorangium cellulosum 1 56 genus 0 479 50 1 Chondromyces crocatus 1 52 479 0 species 1 0 family 573 1 1055686 3 Sandaracinaceae genus 0 1 572 1055688 1 2 Sandaracinus 571 0 species Sandaracinus amylolyticus 1 927083 224462 3 suborder 0 847 5 0 family 847 1 224464 3 Kofleriaceae Haliangium 2 1 162027 842 5 0 genus Haliangium ochraceum 1 80816 837 species 0 40 order 0 3474 1 69541 Desulfuromonadales 24 17 0 family 2363 1 213422 Geobacteraceae 14 2175 genus 0 43 Geobacter 11 28231 1 1340425 Geobacter anodireducens 1 0 species 93 0 species 166 313985 1 Geobacter lovleyi 1 Geobacter pickeringii 345632 153 0 species 1203471 1 Geobacter daltonii 0 species 133 2 2627627 425 no rank 0 species 0 298 443143 Geobacter sp. M18 1 Geobacter sp. M21 1 443144 127 species 0 103 species 0 1 Geobacter sulfurreducens 35554 166 0 species Geobacter bemidjiensis 1 225194 Geobacter metallireducens 1 28232 299 species 0 0 species 594 351604 Geobacter uraniireducens 1 1 392332 2 Geoalkalibacter 8 genus 0 171 species 0 163 483547 1 Geoalkalibacter subterraneus 1071 4 family 0 Desulfuromonadaceae 9 1 213421 7 genus 0 502 1 890 Desulfuromonas 3 0 species 299 1603606 Desulfuromonas soudanensis 1 196 0 no rank 1 2614637 Desulfuromonas sp. DDH964 1 1823759 196 species 0 565 10 0 genus Pelobacter 5 1 18 139 0 species 1 Pelobacter acetylenicus 29542 132 species 0 Pelobacter carbinolicus 1 19 0 no rank 137 2620299 1 137 species 0 1 Pelobacter sp. SFB93 1842532 29543 Pelobacter propionicus 1 0 species 147 1083 0 order 2 Desulfurellales 4 213113 1 3 Desulfurellaceae 1 117942 1081 7 0 family genus 0 714 33001 1 33002 Desulfurella acetivorans 1 0 species 714 genus 0 360 84404 1 360 species 0 Hippea maritima 1 84405 154 0 order 3 4 Desulfarculales 453227 1 Desulfarculaceae 3 1 453228 151 1 0 family 150 2 0 genus 2 Desulfarculus 1 453229 1 Desulfarculus baarsii 453230 148 0 species 29547 1 71 Epsilonproteobacteria 0 class 41 35689 213849 1 Campylobacterales 64 0 order 77 34570 72294 1 41 Campylobacteraceae 0 family 60 28263 genus 0 27 2188 57665 1 Sulfurospirillum 9 species 0 112 366522 1 Sulfurospirillum cavolei 194424 1 Sulfurospirillum halorespirans species 0 255 0 species 282 44674 1 Sulfurospirillum barnesii 0 no rank 971 2618290 3 0 species 270 220622 1 Sulfurospirillum sp. JPD-1 1986224 Sulfurospirillum sp. SL2-1 1 0 species 317 1 Sulfurospirillum sp. UCH001 1581011 384 0 species 293 0 species Sulfurospirillum deleyianum 1 65553 species 0 248 66821 Sulfurospirillum multivorans 1 7923 no rank 0 5 2321108 0 genus 1850 2321187 1 Arcobacter sp. LPB0137 1 1850254 1850 0 species 3 Arcobacter 28196 1 4115 0 genus 56 28197 Arcobacter butzleri 1 0 species 2466 species 0 1593 28199 Arcobacter nitrofigilis 1 1958 no rank 0 1 2321207 0 species 1958 944547 Arcobacter sp. L 1 160 genus 0 18092 1 194 Campylobacter 26 species 0 717 497724 1 Campylobacter subantarcticus species 0 679 1031542 Campylobacter volucris 1 1 Campylobacter lanienae 75658 309 0 species 28898 1 Campylobacter helveticus species 0 375 425 species 0 Campylobacter concisus 1 199 201 1 Campylobacter lari 0 species 1960 1 Campylobacter coli 195 1239 species 0 0 species 568 198 1 Campylobacter hyointestinalis 474 0 species 1 Campylobacter avium 522485 145 0 species Campylobacter curvus 1 200 1 Campylobacter cuniculorum 374106 598 species 0 0 species 897 260714 1 Campylobacter insulaenigrae 778 species 0 1 Campylobacter fetus 196 1965231 Campylobacter pinnipediorum 1 0 species 1102 species 0 722 488546 Campylobacter peloridis 1 197 1 Campylobacter jejuni species 0 1488 species 0 432 1244531 1 Campylobacter iguaniorum 824 Campylobacter gracilis 1 species 0 87 206 Campylobacter sputorum 1 species 0 1306 2593542 4 no rank 0 2294 826 species 0 1 Campylobacter sp. RM16704 1500960 1660074 Campylobacter sp. RM8964 1 species 0 554 0 species 380 1660073 1 Campylobacter sp. RM6137 1 Campylobacter sp. RM12175 1660076 534 species 0 0 species 894 827 Campylobacter ureolyticus 1 443 0 species 1 Campylobacter hominis 76517 4448 2 family 0 Helicobacteraceae 14 1 72293 4339 25 genus 0 12 Helicobacter 1 209 species 0 328 32025 1 Helicobacter hepaticus 1 Helicobacter himalayensis 1591088 174 0 species 138563 1 Helicobacter cetorum species 0 517 2593540 1 no rank 0 149 0 species 149 222136 Helicobacter sp. MIT 01-6242 1 212 Helicobacter acinonychis 1 0 species 143 0 species 242 213 1 Helicobacter cinaedi 176 0 species 1 Helicobacter mustelae 217 species 0 84 214 1 Helicobacter felis 1 Helicobacter bilis 37372 281 0 species 183 species 0 Helicobacter typhlonius 1 76936 1 Helicobacter pylori 210 2037 species 0 843 1 genus 0 107 1 Wolinella succinogenes 844 107 species 0 0 family 1078 2771471 4 965 0 genus 3 Sulfurimonas 3 202746 1 Sulfurimonas autotrophica 1 202747 443 0 species 1 Sulfurimonas denitrificans 39766 519 species 0 286130 1 genus 0 113 113 species 0 Sulfuricurvum kujiense 1 148813 704 0 family 4 2771472 1 269260 234 0 genus 1 Nitratifractor salsuginis 269261 234 species 0 Sulfurovum 3 265570 1 470 0 genus 6 Sulfurovum lithotrophicum 1 206403 243 species 0 2646778 1 no rank 0 221 221 0 species 1 Sulfurovum sp. NBC37-1 387093 235899 1 Nautiliales 6 0 order 2 1078 Nautiliaceae 3 224467 1 816 0 family 2 1 191291 2 Nautilia 5 genus 0 814 244787 1 Nautilia profundicola 0 species 809 2795691 2 0 family 260 260 0 genus 5 Nitratiruptor 2 269258 1 no rank 0 255 2624044 1 387092 1 Nitratiruptor sp. SB155-2 0 species 255