members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 4796 41714 23196821 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 1 194 23084862 Bacteria 4478 0 2 superkingdom 47768 99 1783257 clade 0 3352 0 phylum 204428 24 12 Chlamydiia 3352 1 0 class 204429 24 2 1899 Chlamydiales 1 0 51291 order 14 1 1897 Chlamydiaceae 1 0 family 809 13 1896 12 0 no rank 1113537 0 810 genus 12 27 1896 Chlamydia 1 0 species 83557 1 Chlamydia caviae 124 Chlamydia gallinacea 152 0 species 1457153 1 1 83556 species 0 269 Chlamydia felis 175 Chlamydia avium 0 species 1457141 1 0 813 species 1 Chlamydia trachomatis 129 species 83555 0 1 182 Chlamydia abortus 112 Chlamydia pneumoniae 83558 species 0 1 127 Chlamydia muridarum 1 species 83560 0 1 0 species 83559 58 Chlamydia suis 1 0 83554 species Chlamydia psittaci 334 1 0 85991 species 207 Chlamydia pecorum 1441 9 1963360 order 0 1 0 92714 family 300 300 1 0 genus 71666 1 0 71667 species 300 Waddlia chondrophila 5 family 92713 0 1 Parachlamydiaceae 855 1 1 1 313 Candidatus Protochlamydia 2 0 genus 282132 0 389348 species 1 312 Candidatus Protochlamydia naegleriophila genus 83551 0 2 Parachlamydia 541 1 1 species 83552 0 1 540 Parachlamydia acanthamoebae 1 4 Simkaniaceae 286 3 0 92712 family 1 282 Simkania 1 2 genus 34093 0 281 Simkania negevensis 1 species 83561 0 7878 256845 phylum 0 3 Lentisphaeria 7878 21 1 class 1313211 0 3 7857 Victivallales 2293 1 order 278082 0 2 5564 0 1674876 no rank 1 5564 Victivallales bacterium CCUG 44730 1 2094242 species 0 5 phylum 134625 0 1179 1 Kiritimatiellae 1179 14 5 class 1921781 0 4 order 1921782 0 1 Kiritimatiellales 1165 10 0 family 1921783 3 4 1155 Kiritimatiellaceae 1 1 4 Kiritimatiella 1151 2 0 1921784 genus 1 1307763 species 0 1147 Kiritimatiella glycovorans 28 phylum 74201 0 1 Verrucomicrobia 16946 14 6 class 203494 0 1 4844 Verrucomicrobiae 19 57 Verrucomicrobiales 4825 1 0 48461 order 5 1 4768 Akkermansiaceae 10 4 1647988 family 0 17 Akkermansia 4758 1 0 genus 239934 3 2368 Akkermansia muciniphila 1 0 239935 species 1679444 species 0 1 Akkermansia glycaniphila 2373 0 class 1955630 5 1 Methylacidiphilae 652 1 0 717963 order 4 9 Methylacidiphilales 651 1 0 717964 family 3 642 1 642 Methylacidiphilum 6 3 511745 genus 0 0 species 511746 1 284 Methylacidiphilum infernorum Methylacidiphilum fumariolicum 352 1 species 591154 0 12 class 414999 0 1 7986 Opitutae 56 186 Opitutales 7186 1 0 order 415000 7 6 0 134623 family 1 89 7000 Opitutaceae 1 14 1965 Opitutus 2 0 178440 genus 1951 Opitutus terrae species 107709 0 1 Lacunisphaera 2171 51 1 1961799 genus 0 2 1 1838286 species 0 Lacunisphaera limnophila 2120 no rank 278955 0 1 2775 0 794903 species 1 2775 Opitutaceae bacterium TAV5 0 order 415001 4 6 744 Puniceicoccales 1 1 2 Puniceicoccaceae 738 3 0 family 415002 1 5 Coraliomargarita 736 2 0 genus 442430 395922 species 0 1 731 Coraliomargarita akajimensis 3134 0 417295 no rank 2 Verrucomicrobia bacterium IMCC26134 1615 0 1637999 species 1 Verrucomicrobia bacterium 1519 1 0 species 2026799 316 2 134549 class 0 2 0 genus 134550 1 1 Candidatus Xiphinematobacter 316 315 no rank 2648876 0 1 1 1704307 species 0 Candidatus Xiphinematobacter sp. Idaho Grape 315 16 Planctomycetes 18413 1 0 203682 phylum 39 1 98 14083 Planctomycetia 27 0 class 203683 1237 2691355 order 0 3 0 family 1914233 3 5 Gemmataceae 1237 1 2 0 113 genus 1 2 Gemmata 1232 1230 2622970 no rank 0 1 1230 Gemmata sp. SH-PL17 1 1630693 species 0 2691356 order 0 7 3815 7 1763524 family 0 1 Isosphaeraceae 3815 41 0 127 genus 2 6 Isosphaera 822 1 species 128 0 1 816 Isosphaera pallida 2 0 466152 genus 1 2 1301 Singulisphaera 0 466153 species 1 Singulisphaera acidiphila 1299 1 Paludisphaera 1651 15 2 genus 1763521 0 1 0 1387353 species Paludisphaera borealis 1636 0 112 order 11 253 Planctomycetales 6733 1 126 family 0 10 6480 Planctomycetaceae 37 1 2 1649480 genus 0 1 744 Planctopirus 9 1 0 species 120 Planctopirus limnophila 735 2 1649490 genus 0 1 850 Rubinisphaera 1 Rubinisphaera brasiliensis 849 0 119 species 1 1 Fuerstia 1431 2 2 genus 1936111 0 1 0 1891926 species 1429 Fuerstia marisgermanicae 3 0 118 genus 1 26 Planctomyces 3418 3392 2648843 no rank 0 2 1 1632864 species 0 1447 Planctomyces sp. SH-PL14 1945 Planctomyces sp. SH-PL62 0 1636152 species 1 0 order 2691354 5 2200 761 1 family 2691358 0 genus 1676125 0 1 761 1 species 1331910 0 Thermogutta terrifontis 761 1439 2691357 family 0 4 0 265488 genus 2 4 Rhodopirellula 626 1 622 Rhodopirellula baltica 0 species 265606 1 123 genus 0 2 813 Pirellula 4 1 125 species 0 1 809 Pirellula staleyi 666505 class 0 7 3165 Phycisphaerae 10 1 1465 order 2483366 0 2 1465 family 2483367 0 2 1465 2 0 2483368 genus Phycisphaerae bacterium ST-PulAB-D4 760 1 species 1941349 0 Phycisphaerae bacterium L21-RPul-D3 705 1 species 1940790 0 Phycisphaerales 1690 56 1 order 666506 0 4 3 family 666507 0 1 1634 Phycisphaeraceae 20 1 14 Phycisphaera 1614 2 0 genus 666508 0 547188 species 1 1600 Phycisphaera mikurensis 4 0 class 2517206 1149 1 1149 Candidatus Brocadiales 24 4 1127829 order 0 family 1127830 0 3 1125 Candidatus Brocadiaceae 1 1 1 1 Candidatus Kuenenia 1124 2 0 genus 380738 1 174633 species 0 1123 Candidatus Kuenenia stuttgartiensis 0 phylum 508458 11 7943 Synergistia 7943 61 1 class 649775 0 11 1 25 Synergistales 7882 10 0 order 649776 1 Synergistaceae 7857 160 9 family 649777 0 1 14 Cloacibacillus 4517 2 0 508459 genus Cloacibacillus porcorum 4503 1 0 species 1197717 603 1 81466 genus 0 1 0 species 81468 603 Aminobacterium colombiense 699 0 336260 genus 1 0 species 336261 1 699 Thermovirga lienii 2 81461 genus 0 1 Thermanaerovibrio 1292 3 1 species 81462 0 1289 Thermanaerovibrio acidaminovorans 3 Acetomicrobium 586 1 0 genus 49894 2 1 0 species 97477 583 Acetomicrobium mobile 14 40117 phylum 0 6155 0 203693 class 14 42 Nitrospira 6155 1 69 6113 Nitrospirales 1 0 order 189778 13 1 Nitrospiraceae 6044 22 12 family 189779 0 genus 179 0 4 Leptospirillum 1823 1 1 478 1 0 species group 655606 478 Leptospirillum ferrooxidans 0 species 180 1 1 species group 261386 0 658 658 Leptospirillum ferriphilum species 178606 0 1 686 1 species group 261385 0 0 species 1660083 1 686 Leptospirillum sp. Group II 'CF-1' 5 0 genus 1234 1 18 Nitrospira 3092 0 42253 species 1 Nitrospira moscoviensis 1071 330214 species 0 1 Nitrospira defluvii 587 584 Candidatus Nitrospira inopinata species 1715989 0 1 Nitrospira japonica 832 1 1325564 species 0 2 genus 28261 0 1 1107 Thermodesulfovibrio 5 1102 Thermodesulfovibrio yellowstonii 1 0 28262 species 4464 phylum 200930 0 11 4464 Deferribacteres 22 1 class 68337 0 11 Deferribacterales 4442 8 1 order 191393 0 10 1 35 Deferribacteraceae 4434 9 0 family 191394 2 793 Flexistipes 1 0 genus 2351 2 791 Flexistipes sinusarabici 1 0 2352 species 15 Calditerrivibrio 1570 1 0 545865 genus 2 0 species 477976 1 1555 Calditerrivibrio nitroreducens 2 0 117999 genus 1 1 Denitrovibrio 1014 1 0 species 118000 Denitrovibrio acetiphilus 1013 53572 genus 0 2 1022 Deferribacter 3 1 1019 Deferribacter desulfuricans 0 species 197162 1 1 12815 Acidobacteria 1 0 57723 phylum 21 11 Blastocatellia 1200 1 0 class 1562566 3 2 0 458032 genus 1 7 1189 Chloracidobacterium Chloracidobacterium thermophilum 1182 1 458033 species 0 17 class 204432 0 1 Acidobacteriia 11614 101 4 332160 order 0 1 Solibacterales 2482 47 21 2435 Solibacteraceae 1 0 332161 family 3 0 332162 genus 2 50 2414 Candidatus Solibacter 1 Candidatus Solibacter usitatus 2364 1 332163 species 0 1 108 9031 Acidobacteriales 12 0 204433 order 204434 family 0 11 8923 Acidobacteriaceae 90 1 11 1714 Acidobacterium 1 0 33973 genus 2 1703 Acidobacterium capsulatum 33075 species 0 1 1 40 Granulicella 2809 3 0 940557 genus Granulicella tundricola 1283 species 940615 0 1 1486 Granulicella mallensis 940614 species 0 1 1 1521 Candidatus Koribacter 9 2 genus 658061 0 1 species 658062 0 1512 Candidatus Koribacter versatilis 0 genus 392733 3 12 2789 Terriglobus 1 0 392734 species 1 1651 Terriglobus roseus 1 0 870903 species Terriglobus saanensis 1126 4421428 380 clade 1783270 0 4411640 0 clade 68336 365 6 1134404 phylum 0 2469 6 class 795747 0 1 2469 Ignavibacteria 7 order 795748 0 5 Ignavibacteriales 2462 14 1 1 0 family 795749 1237 0 genus 795750 1 1237 1 0 591197 species Ignavibacterium album 1237 0 1334117 family 3 4 Melioribacteraceae 1211 1 2 1134403 genus 0 1 Melioribacter 1207 9 Melioribacter roseus 1198 1 0 1134405 species 1 69 Bacteroidetes 4391914 338 0 phylum 976 class 117747 0 23 Sphingobacteriia 29116 27 1 Sphingobacteriales 29089 61 1 order 200666 0 22 21 0 family 84566 1 66 29028 Sphingobacteriaceae 0 929509 genus 1 2153 0 species 995 1 Solitalea canadensis 2153 4 423349 genus 0 1 Mucilaginibacter 4409 50 Mucilaginibacter gotjawali 1466 species 1550579 0 1 1285 Mucilaginibacter sp. BJC16-A31 1 0 species 1234841 1 2617802 no rank 0 1608 1 species 1300914 0 Mucilaginibacter sp. PAMC 26640 1608 1 0 84568 no rank 2177 1 0 1986952 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 2177 1 49 9424 Sphingobacterium 6 0 genus 28453 4 0 2609468 no rank 7625 Sphingobacterium sp. G1-14 2006 0 species 2003121 1 1 species 1538644 0 1608 Sphingobacterium sp. ML3W 1 0 species 1933220 2218 Sphingobacterium sp. B29 743722 species 0 1 1793 Sphingobacterium sp. 21 0 1010 species 1 Sphingobacterium mizutaii 1750 1 61 9075 Pedobacter 6 0 genus 84567 species 430522 0 1 Pedobacter steynii 1936 Pedobacter ginsengisoli 1330 363852 species 0 1 984 species 0 1 Pedobacter heparinus 1720 2085 Pedobacter cryoconitis 1 species 188932 0 1 0 no rank 2628915 1943 Pedobacter sp. PACM 27299 1943 1 0 species 1727164 0 genus 1649482 2 15 Pseudopedobacter 1724 1 1 0 species 151895 1709 Pseudopedobacter saltans 68485 Cytophagia 164 1 class 768503 0 62 order 768507 0 61 68321 Cytophagales 307 1 1853234 family 0 3 Persicobacteraceae 2925 3 1 2 genus 59740 0 1 2922 Persicobacter 61 1 0 2664020 no rank 2861 Persicobacter sp. JZB09 2861 species 1085624 0 1 3 0 family 1937968 1 6 Bernardetiaceae 1423 1 Bernardetia 1417 2 2 1937972 genus 0 species 999 0 1 Bernardetia litoralis 1415 2 0 2762301 family 1306 1 13 1306 Marivirga 2 0 genus 869806 1 0 species 1006 1293 Marivirga tractuosa 1 777 Amoebophilaceae 3 5 1501348 family 0 1 Candidatus Cardinium 402 2 2 genus 273135 0 400 no rank 2641185 0 1 400 Cardinium endosymbiont of Encarsia pergandiella 1 species 249402 0 2 281119 genus 0 1 372 Candidatus Amoebophilus 7 365 Candidatus Amoebophilus asiaticus 0 species 281120 1 1 114 17777 Cytophagaceae 17 0 family 89373 2612 Dyadobacter 13 1 genus 120831 0 2 94254 species 0 1 Dyadobacter fermentans 2599 1 2214 Fibrella 2 2 genus 861914 0 1 0 no rank 2620963 2212 1 1834519 species 0 2212 Fibrella sp. ES10-3-2-2 0 genus 319458 2 6 Leadbetterella 1790 1 Leadbetterella byssophila 1784 1 316068 species 0 1 88 Spirosoma 7831 6 0 genus 107 Spirosoma aerolatum 1412 0 1211326 species 1 0 species 2057025 1 1760 Spirosoma sp. HA7 564064 species 0 1 1432 Spirosoma rigui 1379870 species 0 1 Spirosoma radiotolerans 1550 Spirosoma montaniterrae 1589 1 0 1178516 species 2 978 genus 0 1 1518 Cytophaga 3 1 species 985 0 Cytophaga hutchinsonii 1515 105 genus 0 2 Runella 1698 9 1 species 106 0 1 Runella slithyformis 1689 Cyclobacteriaceae 6079 25 1 563798 family 0 10 2 246875 genus 0 1 1105 Algoriphagus 7 1 1727163 species 0 Algoriphagus sp. M8-2 1098 1 Cyclobacterium 2418 26 3 68288 genus 0 1306 Cyclobacterium amurskyense 1 0 320787 species Cyclobacterium marinum 1086 0 species 104 1 2 0 genus 390846 1 4 Echinicola 1331 species 390884 0 1 1327 Echinicola vietnamensis 1200 Belliella 6 1 232244 genus 0 2 Belliella baltica 1194 0 species 232259 1 16 0 family 1853232 1 130 Hymenobacteraceae 33232 Rufibacter 5609 69 1 1379908 genus 0 4 0 no rank 2639626 2 3646 1735 Rufibacter sp. DG31D 1379910 species 0 1 0 1379909 species 1 1911 Rufibacter sp. DG15C 1894 Rufibacter tibetensis 1 species 512763 0 Hymenobacter 22117 247 1 genus 89966 0 8 Hymenobacter sedentarius 3427 1 species 1411621 0 15576 5 no rank 2615202 0 0 species 1484116 1 Hymenobacter sp. PAMC 26554 3367 2093 Hymenobacter sp. DG25A 1 species 1385663 0 1 1356852 species 0 Hymenobacter sp. APR13 4054 3532 Hymenobacter sp. PAMC 26628 1 0 1484118 species 1 0 species 1385664 2530 Hymenobacter sp. DG25B Hymenobacter swuensis 2867 1446467 species 0 1 38 5376 Pontibacter 1 0 323449 genus 3 1 species 388950 0 2541 Pontibacter akesuensis 2797 Pontibacter korlensis 400092 species 0 1 1 Flammeovirgaceae 4495 8 4 200667 family 0 59739 genus 0 2 1990 Flammeovirga 7 1 1983 2637820 no rank 0 1 1 0 species 1191459 Flammeovirga sp. MY04 1983 0 no rank 340671 1 2497 Flammeovirgaceae bacterium 311 2497 1 species 1257021 0 16315 Chitinophagia 18 1 1853228 class 0 16 1 Chitinophagales 16297 49 15 1853229 order 0 1 63 Chitinophagaceae 16248 14 0 563835 family 1 5045 Chitinophaga 1 0 79328 genus 3 1 0 species 79329 3189 Chitinophaga pinensis 1855 Chitinophagaceae bacterium 13 0 2029983 species 1 5 Flavisolibacter 1267 1 0 genus 398041 2 1262 Flavisolibacter tropicus 1 0 1492898 species 3 Niastella 2664 1 0 354354 genus 2 1 species 354356 0 Niastella koreensis 2661 3 0 379899 genus 1 3 3675 Niabella 1 0 446683 species Niabella soli 1595 Niabella ginsenosidivorans 2077 1 0 1176587 species genus 1769012 0 1 1237 1237 1 0 no rank 2636138 1 1850526 species 0 Arachidicoccus sp. BS20 1237 2 649460 genus 0 1 Filimonas 2297 5 477680 species 0 1 Filimonas lacunae 2292 148 117743 class 0 1 Flavobacteriia 191416 104 1 181 191312 Flavobacteriales 147 0 200644 order 1 0 family 246874 Cryomorphaceae 6 10 0 family 39782 1 6 Blattabacteriaceae 2751 9 0 34098 genus 1 58 Blattabacterium 2745 164514 species 0 1 306 Blattabacterium punctulatus 1 0 species 1653831 Blattabacterium cuenoti 338 2043 6 0 no rank 2647581 1 0 624186 species 381 Blattabacterium sp. (Blattella germanica) Blattabacterium sp. (Blaberus giganteus) 211 1 0 1186051 species 261 Blattabacterium sp. (Mastotermes darwiniensis) 1 species 39768 0 0 species 1316444 1 396 Blattabacterium sp. (Nauphoeta cinerea) 0 367806 species 1 Blattabacterium sp. (Blatta orientalis) 401 393 Blattabacterium sp. (Periplaneta americana) 0 367488 species 1 1 1687 Crocinitomicaceae 1 3 family 1853230 0 2 0 genus 332102 1 51 1686 Fluviicola 1 191579 species 0 Fluviicola taffensis 1635 20 2762318 family 0 63498 14198 Elizabethkingia 68 1 308865 genus 0 6 1527 Elizabethkingia genomosp. 4 1 0 species 1756150 6831 Elizabethkingia anophelis 1 0 1117645 species 1494 Elizabethkingia genomosp. 3 1 0 species 1756149 1 0 species 172045 Elizabethkingia miricola 2190 Elizabethkingia meningoseptica 2088 1 0 species 238 1013 genus 0 1 789 1 species 1014 0 789 Weeksella virosa 28250 genus 0 2 Ornithobacterium 22313 163 1 Ornithobacterium rhinotracheale 22150 1 0 28251 species 19280 no rank 2782232 0 10 2125 1 2782228 genus 0 Chryseobacterium taklimakanense 2125 1 0 536441 species 0 genus 59732 9 70 17155 Chryseobacterium 1 5374 3 no rank 2593645 0 Chryseobacterium sp. IHB B 17019 1622 species 1721091 0 1 Chryseobacterium sp. StRB126 1768 1 species 878220 0 Chryseobacterium sp. T16E-39 1984 0 species 2015076 1 species 558152 0 1 1656 Chryseobacterium piperi Chryseobacterium glaciei 1691 1 0 species 1685010 3661 Chryseobacterium indologenes 1 253 species 0 species 1324352 0 1 2814 Chryseobacterium gallinarum 1889 Chryseobacterium camelliae 1 1265445 species 0 0 genus 34084 1 6918 6918 Riemerella anatipestifer species 34085 0 1 1110 1333713 family 0 2 2 1110 Owenweeksia 1 0 genus 267986 2 1108 Owenweeksia hongkongensis 1 253245 species 0 0 family 1755828 2 4 572 Ichthyobacteriaceae 1 1 1755829 genus 0 568 1 0 242600 species Ichthyobacterium seriolicida 568 1934 Flavobacteriaceae 120934 1 0 49546 family 105 1297 0 genus 1518147 1 1 1790137 species 0 Wenyingzhuangia fucanilytica 1297 genus 1209327 0 1 1270 1 species 1803846 0 1270 Flavivirga eckloniae 2519 Muricauda 4 1 111500 genus 0 3 Muricauda lutaonensis 1116 species 516051 0 1 Muricauda ruestringensis 1399 species 111501 0 1 2 61432 no rank 0 2237 1232 Flavobacteriaceae bacterium 3519-10 species 531844 0 1 1 species 1150389 0 Flavobacteriaceae bacterium UJ101 1005 5 292691 genus 0 1 Gramella 4772 5 1 0 2126553 species 1248 Gramella sp. SH35 1 0 species 1913577 882 Gramella sp. LPB0144 1359 Gramella forsetii 1 411153 species 0 0 species 1486245 1 1278 Gramella flava 0 252356 genus 5 8 Maribacter 4242 1 3 2615042 no rank 0 3282 Maribacter sp. HTCC2170 1029 313603 species 0 1 Maribacter sp. T28 963 species 1836467 0 1 1 0 species 1644130 1290 Maribacter sp. 1_2014MBL_MicDiv 952 Maribacter cobaltidurans 1 0 species 1178778 34445 Capnocytophaga 113 1 genus 1016 0 15 1700 Capnocytophaga ochracea 1018 species 0 1 0 327575 species 1 5856 Capnocytophaga leadbetteri 1 28188 species 0 1911 Capnocytophaga canimorsus species 1019 0 1 6232 Capnocytophaga sputigena 1017 species 0 1 2165 Capnocytophaga gingivalis 0 2640652 no rank 6 12580 5571 Capnocytophaga sp. oral taxon 878 1 0 1316596 species Capnocytophaga sp. ChDC OS43 1598 1 0 species 209053 1581 Capnocytophaga sp. oral taxon 864 0 species 1316593 1 1 1945658 species 0 1064 Capnocytophaga sp. H4358 species 1705617 0 1 Capnocytophaga sp. oral taxon 323 1475 Capnocytophaga sp. H2931 1291 1 0 1945657 species 0 species 1848904 1 1529 Capnocytophaga stomatis 0 28189 species 1 Capnocytophaga cynodegmi 923 0 45243 species 1 Capnocytophaga haemolytica 1436 1 12 2682 Dokdonia 4 0 326319 genus 882 Dokdonia donghaensis 0 326320 species 1 2615033 no rank 0 2 1788 1213 Dokdonia sp. 4H-3-7-5 1 983548 species 0 Dokdonia sp. MED134 575 313590 species 0 1 1 3691 Nonlabens 7 5 genus 363408 0 Nonlabens sediminis 794 0 species 319236 1 796 Nonlabens dokdonensis 1 328515 species 0 2094 2 2615035 no rank 0 1 0 species 1476901 1204 Nonlabens sp. MIC269 1 species 2058134 0 Nonlabens sp. MB-3u-79 890 genus 52959 0 6 6502 Polaribacter 25 1 1417 Polaribacter vadi 1 species 1774273 0 1 996801 species 0 1426 Polaribacter reichenbachii 3634 196858 no rank 0 3 1 species 1529069 0 1357 Polaribacter sp. BM10 987 Polaribacter sp. MED152 species 313598 0 1 1 2058137 species 0 Polaribacter sp. ALD11 1290 Flavobacterium 13018 67 1 237 genus 0 9 1 0 1492737 species 1338 Flavobacterium gilvum Flavobacterium commune 1303 0 1306519 species 1 Flavobacterium crassostreae 948 0 1763534 species 1 859 Flavobacterium psychrophilum 1 species 96345 0 1243 Flavobacterium branchiophilum 1 55197 species 0 1131 Flavobacterium indicum 1 0 species 312277 1 0 996 species Flavobacterium columnare 2312 3817 Flavobacterium johnsoniae species 986 0 1 1 Formosa 1257 12 3 genus 225842 0 1245 2 2644710 no rank 0 1 species 1336794 0 Formosa sp. Hel1_33_131 694 1 species 1336795 0 Formosa sp. Hel3_A1_48 551 1 0 153265 genus 960 Aequorivita sublithincola 960 1 101385 species 0 0 genus 216431 1 874 1 0 species 313588 Croceibacter atlanticus 874 1 1 1896 Tamlana 2 0 genus 393005 Tamlana sp. UJ94 1895 0 species 2069432 1 Salegentibacter 1302 2 1 genus 143222 0 2 2633436 no rank 0 1 1300 1300 Salegentibacter sp. T436 1 0 species 1729720 Robiginitalea 1543 3 1 genus 252306 0 2 0 252307 species 1 1540 Robiginitalea biformata 1 4 1656 Zunongwangia 2 0 417127 genus species 398743 0 1 1652 Zunongwangia profunda 0 genus 1649495 1 1252 1252 1 0 2622645 no rank Seonamhaeicola sp. S2-3 1252 1 0 species 1936081 5 0 104267 genus 1 8 4495 Tenacibaculum 1 0 species 584609 Tenacibaculum jejuense 1456 Tenacibaculum todarodis 1124 0 species 1850252 1 852 Tenacibaculum maritimum species 107401 0 1 1055 Tenacibaculum dicentrarchi 1 669041 species 0 1355 1 178469 genus 0 Arenibacter algicola 1355 0 species 616991 1 0 genus 286104 3 2 1919 Winogradskyella 1 1917 2 0 no rank 2615021 1 species 1936080 0 845 Winogradskyella sp. J14-2 Winogradskyella sp. PG-2 1072 1 754409 species 0 801 genus 389486 0 1 801 no rank 2648869 0 1 1453352 species 0 1 801 Sediminicola sp. YIK13 1 Cellulophaga 3707 1 4 104264 genus 0 1293 Cellulophaga algicola 1 species 59600 0 994 Cellulophaga lytica 1 0 species 979 76594 species 0 1 Cellulophaga baltica 1419 1 genus 336276 0 1146 no rank 2615019 0 1 1146 Olleya sp. Bg11-27 1146 species 2058135 0 1 1071 1 0 genus 83612 0 57029 species 1 1071 Psychroflexus torquis 1 37 2851 Lacinutrix 4 0 genus 291183 1859 0 2647285 no rank 2 Lacinutrix sp. 5H-3-7-4 969 1 species 983544 0 1 2057808 species 0 Lacinutrix sp. Bg11-31 890 1486034 species 0 1 955 Lacinutrix venerupis 1151 261827 genus 0 1 Algibacter alginicilyticus 1151 1 species 1736674 0 2 0 genus 1176327 1 1 Aureitalea 666 0 2636237 no rank 1 665 Aureitalea sp. RR4-38 665 0 species 2094025 1 1 0 genus 358023 811 0 species 1622118 1 Lutibacter profundi 811 2 0 genus 112040 1 1 1342 Zobellia 1 species 63186 0 1341 Zobellia galactanivorans 1377 1 0 2700084 genus 1850246 species 0 1 1377 Lutibacter sp. LPB0138 1 140 Myroides 7953 5 0 genus 76831 2436 2 no rank 2642485 0 species 1583100 0 1 1371 Myroides sp. A21 1065 Myroides sp. ZB35 species 1458492 0 1 Myroides odoratimimus 4230 0 76832 species 1 species 480520 0 1 1147 Myroides profundi 1 940 Siansivirga 1 0 1204360 genus 2 1 762954 species 0 Siansivirga zeaxanthinifaciens 939 573 3 313602 no rank 0 1 1 Candidatus Walczuchella 245 2 0 1940138 genus Candidatus Walczuchella monophlebidarum 244 1415657 species 0 1 0 genus 336809 1 328 1 0 species 336810 328 Candidatus Sulcia muelleri 1 Bacteroidetes Order II. Incertae sedis 6812 118 7 1100069 order 0 6 family 563843 0 1 Rhodothermaceae 6694 60 29548 genus 0 2 2771 Rhodothermus 101 1 1 0 29549 species 2670 Rhodothermus marinus 2 genus 146918 0 1 1299 Salinibacter 1 Salinibacter ruber 1298 species 146919 0 1 2564 0 no rank 1196022 1 Rhodothermaceae bacterium RA 2564 species 1779382 0 1 157 4076787 Bacteroidia 1 0 200643 class 74 Bacteroidales 4067046 1816 1 171549 order 0 61 4 family 171551 0 1 Porphyromonadaceae 17924 96 3 0 836 genus 1 60 Porphyromonas 17828 Porphyromonas gingivalis 13134 837 species 0 1 28123 species 0 1 4634 Porphyromonas asaccharolytica 1 4 Paludibacteraceae 5330 3 0 family 2005523 2 0 genus 346096 1 13 Paludibacter 5326 5313 Paludibacter propionicigenes 1 0 185300 species 2429 185291 no rank 0 1 1 1400053 species 0 Bacteroidales bacterium CF 2429 18712 Dysgonamonadaceae 7 1 family 2005520 0 7 1 6457 Proteiniphilum 20 2 294702 genus 0 species 1642647 0 1 6437 Proteiniphilum saccharofermentans 2 1784836 genus 0 1 Fermentimonas 4684 9 0 1562970 species 1 4675 Fermentimonas caenicola 1 41 7564 Petrimonas 2 0 307628 genus species 1642646 0 1 Petrimonas mucosa 7523 11 0 171552 family 1 45 Prevotellaceae 598298 598253 Prevotella 1200 1 838 genus 0 10 176712 Prevotella intermedia 1 0 28131 species 1 0 species 839 68734 Prevotella ruminicola Prevotella enoeca 28009 species 76123 0 1 Prevotella melaninogenica 76244 28132 species 0 1 0 species 589436 1 69088 Prevotella fusca Prevotella dentalis 49569 species 52227 0 1 no rank 2638335 0 1 17201 1 0 species 652716 Prevotella sp. oral taxon 299 17201 Prevotella denticola 46580 1 0 species 28129 1 species 1177574 0 Prevotella jejuni 64916 1 Barnesiellaceae 98431 7 3 family 2005519 0 2 0 397864 genus 1 110 98424 Barnesiella 1 397865 species 0 Barnesiella viscericola 98314 5 0 family 171550 1 30 73528 Rikenellaceae 0 genus 1611681 2 19 3256 Mucinivorans 1 Mucinivorans hirudinis 3237 1 0 1433126 species 1 136 Alistipes 70242 2 0 239759 genus Alistipes finegoldii 70106 1 species 214856 0 225 Tannerellaceae 554342 1 0 2005525 family 7 531033 Parabacteroides 266 1 375288 genus 0 3 319529 0 no rank 2649774 1 1 0 2025876 species 319529 Parabacteroides sp. CT06 0 823 species 1 211238 Parabacteroides distasonis 0 195950 genus 3 83 Tannerella 23084 1 0 no rank 2620507 1 9455 1 species 712710 0 9455 Tannerella sp. oral taxon HOT-286 13546 Tannerella forsythia 1 0 species 28112 3 1853231 family 0 1 Odoribacteraceae 155304 6 1 14 155298 Odoribacter 2 0 genus 283168 155284 Odoribacter splanchnicus 0 28118 species 1 5 0 333046 no rank 453731 511434 genus 0 2 1346 Candidatus Azobacteroides 28 1 1318 Candidatus Azobacteroides pseudotrichonymphae 1 0 511435 species 0 909656 genus 3 452385 57485 Bacteroides salanitronis species 376805 0 1 Bacteroides vulgatus 309220 0 species 821 1 85680 Bacteroides dorei species 357276 0 1 815 family 0 11 2087201 Bacteroidaceae 81 1 1 53606 2087120 Bacteroides 10 0 816 genus 290053 species 0 1 115480 Bacteroides helcogenes 0 28113 species 1 98532 Bacteroides heparinolyticus 0 28119 species 1 Bacteroides zoogleoformans 85215 680810 Bacteroides cellulosilyticus species 246787 0 1 0 species 47678 1 60013 Bacteroides caccae 0 818 species 1 Bacteroides thetaiotaomicron 478991 1 0 1796613 species Bacteroides caecimuris 125156 Bacteroides fragilis 174643 1 817 species 0 214674 Bacteroides ovatus 28116 species 0 1 3 Marinilabiliales 9584 1 0 1970189 order 12 1295 Salinivirgaceae 4 1 1970190 family 0 3 2 genus 1970191 0 1 Salinivirga 1291 8 1 1307839 species 0 1283 Salinivirga cyanobacteriivorans 2 1573805 family 0 1 2615 Marinifilaceae 3 0 2060722 genus 1 2612 1 0 species 1717717 2612 Marinifilaceae bacterium SPP2 1 14 Marinilabiliaceae 2154 3 0 family 558415 1 2 Alkalitalea 2140 2 0 1193324 genus 1 species 889453 0 Alkalitalea saponilacus 2138 family 1471398 0 3 3517 Prolixibacteraceae 17 1 1471399 genus 0 2 3500 Draconibacterium 12 1 3488 Draconibacterium orientale 1 0 species 1168034 1 5 Saprospiria 2914 7 0 class 1937959 order 1936988 0 6 2909 Saprospirales 7 1 3 family 89374 0 1 756 Saprospiraceae 9 0 genus 1007 2 46 747 Saprospira 1 0 species 1008 1 701 Saprospira grandis 2146 2 family 1937961 0 1 2146 Haliscomenobacter 1 0 2349 genus 2 Haliscomenobacter hydrossis 2145 2350 species 0 1 phylum 1090 0 21 17257 1 17257 Chlorobia 133 21 class 191410 0 229 17124 Chlorobiales 1 0 order 191411 20 1 202 Chlorobiaceae 16895 19 0 family 191412 0 100715 genus 1 774 774 Chloroherpeton thalassium 1 100716 species 0 1 Chlorobaculum 5432 92 4 genus 256319 0 1408 Chlorobaculum tepidum 1097 species 0 1 0 274539 species 1 Chlorobaculum parvum 1695 0 species 274537 1 2237 Chlorobaculum limnaeum no rank 274493 0 8 6830 3 1099 genus 0 1 Pelodictyon 2595 11 1 0 species 34090 960 Pelodictyon phaeoclathratiforme 1 0 species 1100 Pelodictyon luteolum 1624 0 1091 genus 5 7 4235 Chlorobium 1 337090 species 0 1 621 Chlorobium chlorochromatii Chlorobium limicola 1003 species 1092 0 1 0 species 1094 1 974 Chlorobium phaeovibrioides 0 species 1096 1 Chlorobium phaeobacteroides 1630 3657 Prosthecochloris 9 1 1101 genus 0 5 Prosthecochloris aestuarii 769 1 species 1102 0 no rank 2632826 0 3 2879 1 species 281093 0 Prosthecochloris sp. GSB1 1293 0 species 1974213 1 716 Prosthecochloris sp. HL-130-GSB 870 Prosthecochloris sp. CIB 2401 0 species 1868325 1 5 65842 phylum 0 3022 204430 class 0 5 Fibrobacteria 3022 4 1 4 3018 Fibrobacterales 1 0 order 218872 4 0 204431 family 3 7 Fibrobacteraceae 3014 1 1 Fibrobacter 3007 13 2 832 genus 0 2994 Fibrobacter succinogenes 1 833 species 0 0 456828 phylum 2 1282 Candidatus Cloacimonas 1282 2 1 genus 456826 0 2 species 456827 0 1 1280 Candidatus Cloacimonas acidaminovorans 8 phylum 142182 0 5484 5484 Gemmatimonadetes 34 1 219685 class 0 8 7 0 order 219686 1 114 5450 Gemmatimonadales 0 219687 family 6 49 Gemmatimonadaceae 5336 1 1 19 2407 Gemmatimonas 3 0 173479 genus 1 species 1379270 0 Gemmatimonas phototrophica 1201 1 species 173480 0 1187 Gemmatimonas aurantiaca genus 1706036 0 2 Gemmatirosa 2880 7 1 Gemmatirosa kalamazoonesis 2873 861299 species 0 1 7747 0 phylum 200783 25 187857 class 0 25 7747 Aquificae 32 1 32069 order 0 18 6584 Aquificales 5 1 1 0 90150 no rank 529 529 0 genus 412592 1 species 412593 0 1 Thermosulfidibacter takaii 529 11 64898 family 0 1 3345 Aquificaceae 3 1 44 2215 Hydrogenobaculum 6 0 genus 168657 2622382 no rank 0 5 2171 1 species 547146 0 Hydrogenobaculum sp. SN 462 547145 species 0 1 Hydrogenobaculum sp. SHO 462 322 Hydrogenobaculum sp. Y04AAS1 species 380749 0 1 463 Hydrogenobaculum sp. HO 547144 species 0 1 547143 species 0 1 Hydrogenobaculum sp. 3684 462 genus 2713 0 1 461 1 0 species 63363 Aquifex aeolicus 461 294 0 genus 939 1 Hydrogenobacter thermophilus 294 species 940 0 1 372 2 genus 75905 0 0 75906 species 1 Thermocrinis ruber 163 1 species 136094 0 Thermocrinis albus 209 1 7 Hydrogenothermaceae 2705 5 0 224027 family 2 182899 genus 0 1 Persephonella 746 1 species 309805 0 1 Persephonella marina 745 2 212790 genus 0 1952 1302 2619248 no rank 0 1 1 species 436114 0 1302 Sulfurihydrogenibium sp. YO3AOP1 1 0 309806 species 650 Sulfurihydrogenibium azorense order 1485951 0 6 1131 Desulfurobacteriales 13 1 0 family 558314 5 13 1118 Desulfurobacteriaceae 1 2 genus 64159 0 1 661 Desulfurobacterium 1 1 0 64160 species Desulfurobacterium thermolithotrophum 660 1 Thermovibrio 444 1 0 genus 171868 2 443 Thermovibrio ammonificans 1 0 228745 species 5 0 200938 phylum 1983 5 0 118001 class 1 26 1983 Chrysiogenetes 18 1957 Chrysiogenales 1 0 189769 order 4 3 0 family 189770 1 5 Chrysiogenaceae 1939 1 14 1934 Desulfurispirillum 2 0 genus 393029 936456 species 0 1 1920 Desulfurispirillum indicum 203691 phylum 0 58 57762 0 class 203692 58 182 57762 Spirochaetia 1 136 order 0 42 43100 Spirochaetales 1513 1 1 8 5883 Borreliaceae 17 0 family 1643685 Borreliella 2859 125 1 genus 64895 0 8 0 62088 species 1 Borreliella valaisiana 245 Borreliella bissettii 373 species 64897 0 1 Borreliella burgdorferi 663 1 0 species 139 29518 species 0 1 Borreliella afzelii 379 Borreliella garinii 414 1 species 29519 0 Borrelia mayonii 415 species 1674146 0 1 Borreliella bavariensis 245 664662 species 0 1 38 Borrelia 3016 1 0 138 genus 8 species 44449 0 1 Borrelia recurrentis 387 142 species 0 1 400 Borrelia turicatae Borrelia miyamotoi 592 1 47466 species 0 Borrelia parkeri 426 1 0 species 141 Borrelia anserina 451 143 species 0 1 1 0 140 species 306 Borrelia hermsii Borrelia duttonii 416 1 0 species 40834 24 0 family 137 1 587 Spirochaetaceae 35704 12 157 genus 0 1 Treponema 24060 396 1 0 species 81028 2235 Treponema brennaborense Treponema succinifaciens 5207 0 species 167 1 1 species 158 0 2483 Treponema denticola Treponema pallidum 215 1 species 160 0 1 species 215591 0 1363 Treponema caldarium 1 0 409322 species Treponema pedis 1070 3938 Treponema putidum 1 0 221027 species 1 0 2638727 no rank 3963 0 species 1539298 1 Treponema sp. OMZ 838 3963 1 0 53435 species Treponema paraluiscuniculi 199 Treponema primitia 1578 1 0 species 88058 1413 Treponema azotonutricium 1 species 150829 0 4 genus 399320 0 1 5465 Sphaerochaeta 15 1131707 species 0 1 Sphaerochaeta pleomorpha 1503 1401 Sphaerochaeta coccoides 0 273376 species 1 Sphaerochaeta globosa 2546 1 1131703 species 0 1911556 genus 0 2 1584 Sediminispirochaeta 3 1 species 55206 0 1 1581 Sediminispirochaeta smaragdinae 3 0 genus 146 1 64 2666 Spirochaeta species 154 0 1 1273 Spirochaeta thermophila 1 0 species 46355 1329 Spirochaeta africana genus 1616789 0 2 Salinispira 1342 1 1 Salinispira pacifica 1341 1 0 1307761 species 7 order 1643686 0 1 9969 Brachyspirales 17 6 0 143786 family 1 55 Brachyspiraceae 9952 Brachyspira 9897 111 1 29521 genus 0 5 Brachyspira pilosicoli 4440 0 species 52584 1 0 159 species 1 2107 Brachyspira hyodysenteriae 1707 Brachyspira intermedia 0 84377 species 1 1532 Brachyspira murdochii 1 0 species 84378 1643688 order 0 8 4511 170 family 0 8 4511 Leptospiraceae 7 1 1 50 Leptospira 3589 6 0 171 genus Leptospira alstonii 499 1 species 28452 0 1 0 species 174 624 Leptospira borgpetersenii 0 species 173 1 1365 Leptospira interrogans 28183 species 0 1 593 Leptospira santarosai 458 Leptospira biflexa 1 172 species 0 915 1 genus 338321 0 species 29510 0 1 915 Turneriella parva 1913 9 200940 phylum 0 3 1913 Thermodesulfobacteria 1 0 67799 class 9 0 order 188710 8 3 1910 Thermodesulfobacteriales 1 7 188711 family 0 1 Thermodesulfobacteriaceae 1907 1 241192 genus 0 1 462 1 0 171695 species 462 Thermodesulfatator indicus 0 444090 genus 2 1 Caldimicrobium 426 1 1 1653476 species 0 425 Caldimicrobium thiodismutans 1 1018 Thermodesulfobacterium 12 3 1740 genus 0 0 1741 species 1 Thermodesulfobacterium commune 323 1 species 1295609 0 Thermodesulfobacterium geofontis 683 phylum 1930617 0 3 1212 1 1212 Calditrichae 1 3 1962850 class 0 1 14 Calditrichales 1211 2 0 1962852 order 1197 0 1962854 family 1 1197 genus 187144 0 1 1197 Caldithrix abyssi 187145 species 0 1 11 0 phylum 74152 1 1 2165 Elusimicrobia 397 99260 no rank 0 1 1 0 species 167965 397 uncultured Termite group 1 bacterium 1146 0 447830 class 5 5 order 1783344 0 1 Endomicrobiales 1146 5 1 1141 Endomicrobiaceae 1 4 family 1783343 0 0 1408194 genus 3 3 Endomicrobium 1140 1 746 Endomicrobium proavitum species 1408281 0 1 Candidatus Endomicrobium trichonymphae 391 1 0 1408204 species 4 641853 class 0 621 1 7 621 Elusimicrobiales 4 0 order 641854 23 Elusimicrobiaceae 614 1 0 family 641876 3 2 0 423604 genus 1 2 Elusimicrobium 591 589 Elusimicrobium minutum 0 423605 species 1 16476844 1726 0 clade 1783272 36 phylum 1297 0 35996 1 279 Deinococci 35996 36 0 class 188787 347 19863 Deinococcales 1 0 order 118964 15 124 19516 Deinococcaceae 1 0 183710 family 14 1 342 Deinococcus 19392 13 0 1298 genus 1 0 species 55148 1687 Deinococcus proteolyticus 1792 Deinococcus actinosclerus 1768108 species 0 1 Deinococcus soli Cha et al. 2016 1597 1 species 1309411 0 species 310783 0 1 1242 Deinococcus deserti 1 0 species 1182571 Deinococcus swuensis 2157 1573 Deinococcus maricopensis 1 species 309887 0 1420 1 2623546 no rank 0 species 2080419 0 1 Deinococcus sp. NW-56 1420 1689 Deinococcus radiodurans 1 0 1299 species Deinococcus puniceus 1328 0 species 1182568 1 0 432329 species 1 1308 Deinococcus peraridilitoris 1 502394 species 0 2067 Deinococcus gobiensis species 68909 0 1 1190 Deinococcus geothermalis 0 2762275 order 3 1583 7 1583 Trueperaceae 1 0 family 332247 3 genus 332248 0 2 Truepera 1576 6 1 332249 species 0 1 1570 Truepera radiovictrix 17 0 order 68933 1 154 14271 Thermales Thermaceae 14117 77 1 188786 family 0 16 8 genus 270 0 1 Thermus 7218 297 1 0 species 56957 844 Thermus oshimai 818 Thermus scotoductus 1 species 37636 0 1 0 species 271 Thermus aquaticus 938 723 2619321 no rank 0 1 species 1111069 0 1 Thermus sp. CCB_US3_UF1 723 1 species 274 0 Thermus thermophilus 1754 1 species 56956 0 818 Thermus brockianus 1 0 456163 species 1026 Thermus parvatiensis 186191 genus 0 2 1229 Marinithermus 1 1 1 0 186192 species Marinithermus hydrothermalis 1228 2 0 208447 genus 1 7 2378 Oceanithermus Oceanithermus profundus 2371 1 187137 species 0 Meiothermus 3215 18 1 genus 65551 0 3 1753 Meiothermus ruber 1 277 species 0 Meiothermus silvanus 1444 species 52022 0 1 0 phylum 201174 657 128 Actinobacteria 1181732 1 Thermoleophilia 2644 37 1 class 1497346 0 5 0 588673 order 4 62 2607 Solirubrobacterales 1 1 2545 Conexibacteraceae 37 3 320583 family 0 0 genus 191494 2 33 2508 Conexibacter 1 2475 Conexibacter woesei 1 0 191495 species 32 class 84998 0 1 254714 Coriobacteriia 1477 13 0 order 84999 1 504 Coriobacteriales 147425 84107 family 0 5 124366 Coriobacteriaceae 1662 1 0 genus 102106 2 53 114468 Collinsella 1 1 74426 species 0 114415 Collinsella aerofaciens 3131 0 33870 genus 1 Coriobacterium glomerans 3131 0 species 33871 1 5105 0 84113 no rank 1 1 1531429 species 0 5105 Coriobacteriaceae bacterium 68-1-3 1 22555 Atopobiaceae 513 7 family 1643824 0 2427 1 0 genus 2767353 0 species 1382 1 Atopobium parvulum 2427 Atopobium 8 1 1380 genus 0 1 142 Olsenella 19607 4 0 genus 133925 Olsenella sp. Marseille-P2300 10076 1 1805478 species 0 3834 1 2638792 no rank 0 species 712411 0 1 3834 Olsenella sp. oral taxon 807 5555 Olsenella uli 1 species 133926 0 0 1643822 order 18 1368 105812 Eggerthellales 1 1 104444 Eggerthellaceae 17875 17 1643826 family 0 2 447020 genus 0 1 Adlercreutzia 25253 10 1 0 446660 species Adlercreutzia equolifaciens 25243 1 7275 Slackia 14 2 genus 84108 0 Slackia heliotrinireducens 7261 1 0 84110 species 2 0 genus 84162 1 4 Cryptobacterium 1097 Cryptobacterium curtum 1093 1 84163 species 0 3 5045 Phoenicibacter 1 0 genus 1981050 2 1944646 species 0 1 5042 Phoenicibacter massiliensis Gordonibacter 19097 262 1 genus 644652 0 3 Gordonibacter urolithinfaciens 9703 0 species 1335613 1 Gordonibacter massiliensis 9132 0 1841863 species 1 2 0 79603 genus 1 2 Denitrobacterium 3825 3823 Denitrobacterium detoxificans 1 79604 species 0 3 genus 84111 0 1 24977 Eggerthella 337 0 84112 species 1 18924 Eggerthella lenta 1 0 2648737 no rank 5716 1 0 502558 species Eggerthella sp. YY7918 5716 0 class 84992 7 9 2031 Acidimicrobiia 1 0 84993 order 6 71 Acidimicrobiales 2022 1 1 Acidimicrobiaceae 614 23 3 84994 family 0 38 591 Acidimicrobium 1 0 53634 genus 2 1 53635 species 0 Acidimicrobium ferrooxidans 553 2 0 2448023 family 1337 1 12 1337 Ilumatobacter 2 0 682522 genus 1325 Ilumatobacter coccineus 1 0 species 467094 6 class 84995 0 1 2308 Rubrobacteria 15 order 84996 0 5 2293 Rubrobacterales 65 1 12 Rubrobacteraceae 2228 1 0 family 84997 4 1 25 Rubrobacter 2216 3 0 genus 42255 Rubrobacter xylanophilus 1366 1 0 species 49319 825 Rubrobacter radiotolerans 42256 species 0 1 918907 Actinobacteria 9853 1 1760 class 0 602 7 0 85013 order 1 18 Frankiales 6092 1 80 6074 Frankiaceae 6 0 family 74712 0 1854 genus 5 103 Frankia 5994 1 1087 Frankia casuarinae 0 species 106370 1 1780 Frankia inefficax 1 0 species 298654 1537 1 no rank 2632575 0 Frankia sp. EAN1pec 1537 0 298653 species 1 0 species 1859 1 Frankia alni 1487 1 Glycomycetales 1650 3 4 order 85014 0 85034 family 0 3 Glycomycetaceae 1647 32 1 1615 Stackebrandtia 25 1 283810 genus 0 2 1 283811 species 0 Stackebrandtia nassauensis 1590 4 0 order 1643684 1 22 Nakamurellales 1647 83 Nakamurellaceae 1625 1 0 85031 family 3 0 genus 53460 2 39 1542 Nakamurella 1 1503 Nakamurella multipartita 0 species 53461 1 19 order 2037 0 1 27432 Actinomycetales 68 1 27364 Actinomycetaceae 8195 18 family 2049 0 2050 genus 0 2 2959 Mobiluncus 199 1 1 2051 species 0 2760 Mobiluncus curtisii 1653174 genus 0 2 826 Actinotignum 9 1 59505 species 0 1 Actinotignum schaalii 817 2 genus 1069494 0 1 1960 Trueperella 23 0 species 1661 1 Trueperella pyogenes 1937 687 28263 genus 0 1 687 Arcanobacterium haemolyticum 1 28264 species 0 1 336 Actinomyces 11419 9 0 genus 1654 4273 2609248 no rank 0 3 0 1851395 species 1 Actinomyces sp. Chiba101 1307 2081702 species 0 1 1437 Actinomyces sp. oral taxon 897 1529 Actinomyces sp. oral taxon 414 1 0 712122 species 1563 Actinomyces oris species 544580 0 1 Actinomyces gaoshouyii 963 0 species 1960083 1 1 0 species 1912795 473 Actinomyces sp. VUL4_3 2106 Actinomyces pacaensis 1 0 species 1852377 Actinomyces radicidentis 1705 1 0 111015 species 0 genus 2529408 1 1318 1 species 52773 0 1318 Actinomyces meyeri 162 85007 order 0 1 Corynebacteriales 153947 1412 52 0 family 1653 1 560 50357 Corynebacteriaceae 0 genus 1716 51 1382 Corynebacterium 49797 1 779 Corynebacterium lactis 0 1231000 species 1 1 species 146827 0 Corynebacterium simulans 1276 1158 Corynebacterium ulcerans 1 0 65058 species species 1697 0 1 Corynebacterium ammoniagenes 706 0 species 1408191 1 916 Corynebacterium deserti Corynebacterium pseudotuberculosis 524 1 1719 species 0 Corynebacterium jeikeium 1795 1 0 species 38289 1 0 156978 species 1050 Corynebacterium imitans Corynebacterium glaucum 853 1 0 187491 species Corynebacterium glyciniphilum 830 1 0 species 1404244 2 2624378 no rank 0 1623 species 1487956 0 1 Corynebacterium sp. ATCC 6931 844 779 Corynebacterium sp. NML98-0116 1 702967 species 0 1 0 1727 species 1159 Corynebacterium variabile Corynebacterium ureicelerivorans 980 1 0 species 401472 Corynebacterium singulare 884 1 species 161899 0 0 203263 species 1 Corynebacterium aquilae 1293 species 1230998 0 1 Corynebacterium frankenforstense 1562 Corynebacterium callunae 802 species 1721 0 1 Corynebacterium glutamicum 1515 1 species 1718 0 Corynebacterium sphenisci 1302 1 0 191493 species Corynebacterium marinum 1192 species 349751 0 1 Corynebacterium aurimucosum 1003 169292 species 0 1 species 108486 0 1 Corynebacterium falsenii 1074 1 136857 species 0 1070 Corynebacterium testudinoris 520 Corynebacterium kroppenstedtii 1 161879 species 0 766 Corynebacterium flavescens species 28028 0 1 1630 Corynebacterium vitaeruminis 1 0 38305 species 1 0 152794 species Corynebacterium efficiens 1010 507 Corynebacterium resistens 258224 species 0 1 Corynebacterium diphtheriae 1162 species 1717 0 1 582 Corynebacterium cystitidis 1 0 35757 species 1 191610 species 0 733 Corynebacterium atypicum 1 0 1223514 species 1161 Corynebacterium humireducens [Brevibacterium] flavum 638 1 0 species 92706 654 Corynebacterium argentoratense 0 species 42817 1 1 species 1121358 0 Corynebacterium doosanense 961 Corynebacterium kutscheri 453 0 35755 species 1 707 Corynebacterium casei 1 species 160386 0 643 Corynebacterium camporealensis species 161896 0 1 688 Corynebacterium mustelae 0 571915 species 1 Corynebacterium striatum 1925 species 43770 0 1 1050 Corynebacterium maris 0 species 575200 1 0 species 161895 1 934 Corynebacterium phocae 1 0 1705 species Corynebacterium stationis 1024 Corynebacterium uterequi 1074 1 0 species 1072256 1 89154 species 0 677 Corynebacterium terpenotabidum species 1652495 0 1 893 Corynebacterium crudilactis 0 225326 species 1 Corynebacterium halotolerans 1027 species 43771 0 1 939 Corynebacterium urealyticum Corynebacterium epidermidicanis 711 species 1050174 0 1 0 85026 family 9 94 7123 Gordoniaceae 1 8 2053 genus 0 1 Gordonia 7029 151 1114 Gordonia polyisoprenivorans 0 84595 species 1 Gordonia phthalatica 1006 1 1136941 species 0 1 0 2054 species Gordonia bronchialis 868 785 Gordonia iterans 1 species 1004901 0 species 2055 0 1 Gordonia terrae 1037 2068 2 2657482 no rank 0 1189 Gordonia sp. KTR9 1 337191 species 0 1 0 2059875 species Gordonia sp. YC-JH1 879 4 family 85028 0 1 2839 Tsukamurellaceae 13 1 94 2826 Tsukamurella 3 0 2060 genus 1370 Tsukamurella paurometabola 1 0 2061 species species 57704 0 1 Tsukamurella tyrosinosolvens 1362 1 13 1998 Dietziaceae 4 0 family 85029 23 Dietzia 1985 1 0 37914 genus 3 0 2617939 no rank 1 1018 1 712270 species 0 1018 Dietzia sp. oral taxon 368 Dietzia timorensis 944 0 species 499555 1 822 0 697024 no rank 2 0 genus 1847725 2 19 822 Lawsonella 1 803 Lawsonella clevelandensis 1 0 species 1528099 0 family 1762 56 251 Mycobacteriaceae 50997 1 568 697025 genus 0 1 568 Hoyosella subflava 1 0 639313 species 0 1866885 genus 13 14590 1 0 1771 species Mycobacterium phlei 1385 875 Mycobacterium rhodesiae 0 species 36814 1 species 110539 0 1 1049 Mycobacterium vanbaalenii species 758802 0 1 Mycobacterium litorale 1086 1209 Mycobacterium aurum 1 0 1791 species 977 Mycobacterium neoaurum 0 species 1795 1 Mycobacterium gilvum 1279 1804 species 0 1 1772 species 0 1 Mycobacterium smegmatis 1105 1 0 1797 species 1015 Mycobacterium thermoresistibile 1 134601 species 0 Mycobacterium goodii 1380 1273 Mycobacterium vaccae 1 0 species 1810 Mycobacterium chubuense 978 1 1800 species 0 0 species 1766 1 Mycobacterium fortuitum 979 29147 Mycobacterium 2479 1 genus 1763 0 34 Mycobacterium kansasii 987 species 1768 0 1 12238 13 0 2642494 no rank species 1273687 0 1 1021 Mycobacterium sp. VKM Ac-1817D 1 0 164757 species 900 Mycobacterium sp. JLS Mycobacterium sp. JS623 1018 0 species 212767 1 1 0 1570328 species 977 Mycobacterium sp. NRRL B-3805 Mycobacterium sp. QIA-37 662 0 species 1561223 1 1 0 species 1545728 805 Mycobacterium sp. EPa45 1092 Mycobacterium sp. PYR15 species 2051552 0 1 Mycobacterium sp. djl-10 1442 1 1879023 species 0 1920667 species 0 1 992 Mycobacterium sp. WY10 Mycobacterium sp. MCS 944 1 0 164756 species 1 0 1168287 species Mycobacterium sp. MOTT36Y 350 1 1682113 species 0 1041 Mycobacterium sp. YC-RL4 1 species 189918 0 994 Mycobacterium sp. KMS 1 0 species 1769 236 Mycobacterium leprae 973 Mycobacterium marinum 1781 species 0 1 0 77643 species group 4 1935 0 78331 species 1 441 Mycobacterium canettii 1 1494 Mycobacterium tuberculosis 557 3 species 1773 0 Mycobacterium africanum 465 biotype 33894 0 1 472 Mycobacterium bovis 0 biotype 1765 1 1 0 482462 species 1212 Mycobacterium dioxanotrophicus 0 species group 120793 8 5716 1 0 species 1764 1812 Mycobacterium avium 4 0 1767 species 1 349 1809 Mycobacterium intracellulare Mycobacterium indicus pranii 238 0 subspecies 35617 1 1 subspecies 222805 0 765 Mycobacterium chimaera 1 subspecies 1203599 0 Mycobacterium yongonense 457 822 Mycobacterium marseillense 0 species 701042 1 Mycobacterium colombiense 995 0 species 339268 1 278 Mycobacterium paraintracellulare species 1138383 0 1 1 species 261524 0 Mycobacterium liflandii 807 1 0 1809 species Mycobacterium ulcerans 881 925 1 0 2249310 species group species 722731 0 1 Mycobacterium shigaense 925 758 Mycobacterium haemophilum 0 29311 species 1 2 1073531 genus 0 1640 Mycobacterium terrae 800 1 species 1788 0 1 0 species 875328 Mycobacterium sinense 840 4801 670516 genus 0 5 Mycobacterium abscessus 1673 1 0 36809 species 1 0 1520670 species 739 Mycobacterium stephanolepidis 0 83262 species 1 840 Mycobacterium immunogenum 1774 species 0 1 Mycobacterium chelonae 637 Mycobacterium saopaulense 912 1 0 1578165 species Segniliparaceae 797 5 1 316606 family 0 3 0 genus 286801 2 3 792 Segniliparus 1 1 0 species 286802 Segniliparus rotundus 789 31 0 85025 family 1 254 Nocardiaceae 37602 1 273 13275 Nocardia 7 0 1817 genus 1431 Nocardia nova 1 0 species 37330 2068 Nocardia seriolae 0 species 37332 1 2845 Nocardia cyriacigeorgica 1 0 135487 species 2170 Nocardia farcinica 37329 species 0 1 37326 species 0 1 Nocardia brasiliensis 2680 1 455432 species 0 1808 Nocardia terpenica 1 24073 Rhodococcus 1077 23 genus 1827 0 12 no rank 192944 0 10818 0 1653478 species 1 Rhodococcus sp. PBTS 1 952 1 0 1727214 species Rhodococcus sp. H-CA8f 864 Rhodococcus sp. 008 934 1 species 1723645 0 0 935199 species 1 873 Rhodococcus sp. p52 Rhodococcus sp. WMMA185 513 1 0 species 679318 868 Rhodococcus sp. YL-1 0 1045808 species 1 980 Rhodococcus sp. B7740 1 0 1564114 species species 1570939 0 1 833 Rhodococcus sp. 2G 793 Rhodococcus sp. PBTS 2 1 0 1653479 species 1 0 1033922 species 1330 Rhodococcus sp. WB1 0 species 1805827 1 Rhodococcus sp. MTM3W5.2 1112 766 Rhodococcus sp. BH4 0 species 1807790 1 831 Rhodococcus fascians 1 0 species 1828 0 103816 species 1 Rhodococcus pyridinivorans 948 0 1829 species 1 766 Rhodococcus rhodochrous Rhodococcus opacus 2548 1 0 species 37919 0 species 1830 1 Rhodococcus ruber 1311 0 334542 species 1 867 Rhodococcus qingshengii Rhodococcus jostii 1107 0 species 132919 1 Rhodococcus hoagii 1197 1 0 species 43767 1 species 1833 0 Rhodococcus erythropolis 1252 191292 species 0 1 Rhodococcus aetherivorans 1351 0 1643818 no rank 2 1178 4 1178 Thermobispora 1 0 genus 147067 2 species 2006 0 1 1174 Thermobispora bispora 16 0 order 85012 1 134 15214 Streptosporangiales 98 Streptosporangiaceae 6669 1 0 2004 family 5 1 43 Nonomuraea 4119 2 0 83681 genus 4076 1 2593643 no rank 0 4076 Nonomuraea sp. ATCC 55076 species 1909395 0 1 33 Streptosporangium 2452 1 0 genus 2000 2 1 0 2001 species 2419 Streptosporangium roseum family 2012 0 3 Thermomonosporaceae 2363 40 1 1 45 2323 Thermomonospora 2 0 2019 genus Thermomonospora curvata 2278 0 2020 species 1 83676 family 0 7 Nocardiopsaceae 6048 85 1 0 83677 genus 2 13 942 Thermobifida 1 1 0 2021 species Thermobifida fusca 929 4 0 2013 genus 1 106 5021 Nocardiopsis 0 species 2014 1 Nocardiopsis dassonvillei 2045 0 280236 species 1 1397 Nocardiopsis gilva 0 53437 species 1 Nocardiopsis alba 1473 1 Bifidobacteriales 330904 218 26 order 85004 0 1 14138 330686 Bifidobacteriaceae 25 0 31953 family 1 6 Gardnerella 2133 2 0 genus 2701 2127 Gardnerella vaginalis species 2702 0 1 1 6 Parascardovia 1066 2 0 196082 genus 0 species 78258 1 Parascardovia denticolens 1060 1 1474 Bifidobacterium 312491 19 0 genus 1678 1 species 216816 0 67514 Bifidobacterium longum Bifidobacterium animalis 2410 1 28025 species 0 4090 Bifidobacterium angulatum 1683 species 0 1 Bifidobacterium choerinum 2050 1 35760 species 0 0 1691 species 1 1135 Bifidobacterium indicum 2226 Bifidobacterium thermophilum 1 species 33905 0 Bifidobacterium actinocoloniiforme 1129 1 638619 species 0 Bifidobacterium scardovii 3476 1 species 158787 0 77635 Bifidobacterium adolescentis 0 1680 species 1 2 0 1686 species 1 8299 22835 Bifidobacterium catenulatum 14536 Bifidobacterium kashiwanohense 0 630129 subspecies 1 0 species 1689 1 Bifidobacterium dentium 2307 1 0 species 28026 Bifidobacterium pseudocatenulatum 43089 Bifidobacterium coryneforme 1048 0 species 1687 1 1 0 1685 species 26841 Bifidobacterium breve 1 0 1681 species 48743 Bifidobacterium bifidum 1296 Bifidobacterium asteroides 0 1684 species 1 Bifidobacterium pseudolongum 3193 1 species 1694 0 genus 196081 0 1 858 858 Scardovia inopinata 1 0 78259 species Propionibacteriales 29106 265 1 order 85009 0 33 244 Nocardioidaceae 9720 1 0 family 85015 13 2 182639 genus 0 1 1437 Kribbella 33 species 182640 0 1 Kribbella flavida 1404 1 1287 Aeromicrobium 22 2 2040 genus 0 Aeromicrobium erythreum 1265 2041 species 0 1 1 110 Nocardioides 3818 4 0 1839 genus Nocardioides dokdonensis 1263 1 0 species 450734 1 2045452 species 0 1185 Nocardioides sp. 78 1260 0 2615069 no rank 1 1 0 species 196162 1260 Nocardioides sp. JS614 1 Micropruina 1139 5 2 genus 116071 0 1 species 75385 0 1134 Micropruina glycogenica 37 1795 Pimelobacter 1 0 genus 2044 2 1 species 2045 0 1758 Pimelobacter simplex 1 320 Propionibacteriaceae 19121 19 0 31957 family 1 0 genus 2801844 1076 Pseudopropionibacterium propionicum 1076 species 1750 0 1 5 72763 genus 0 1 6210 Tessaracoccus 61 1 0 399497 species Tessaracoccus flavescens 1424 1610493 species 0 1 Tessaracoccus flavus 1548 Tessaracoccus aquimaris 1491 1 1332264 species 0 1686 0 no rank 2635419 1 1909732 species 0 1 Tessaracoccus sp. T2.5-30 1686 1 3506 Cutibacterium 44 4 genus 1912216 0 Cutibacterium avidum 1593 species 33010 0 1 1144 Cutibacterium acnes 1 0 1747 species Cutibacterium granulosum 725 species 33011 0 1 2 0 genus 29404 1 20 Microlunatus 1086 Microlunatus phosphovorus 1066 0 species 29405 1 1 57 3503 Propionibacterium 3 0 1743 genus 2733 Propionibacterium freudenreichii species 1744 0 1 0 2608905 no rank 1 713 Propionibacterium sp. oral taxon 193 713 1 671223 species 0 1045 0 203133 genus 1 1045 no rank 2633994 0 1 Propionimicrobium sp. Marseille-P3275 1045 1 0 1871034 species 0 1912215 genus 2 39 2375 Acidipropionibacterium 1 Acidipropionibacterium acidipropionici 2336 1 0 1748 species 335 1 0 52018 no rank 1 0 species 1650658 Actinobacteria bacterium IMCC26256 335 85010 order 0 42 Pseudonocardiales 46213 139 1 1 46074 Pseudonocardiaceae 779 41 family 2070 0 1177 Prauserella 2 1 142577 genus 0 2 530584 species 0 1 1175 Prauserella marina 2 1851 genus 0 1 594 Saccharomonospora 2 0 species 1852 1 Saccharomonospora viridis 592 4 Saccharopolyspora 1865 1 0 1835 genus 2 1861 Saccharopolyspora erythraea 0 1836 species 1 0 genus 2071 2 9 2204 Saccharothrix 1 1 0 103731 species 2195 Saccharothrix espanaensis 1847 genus 0 8 8875 Pseudonocardia 217 1 7124 2619320 no rank 0 6 Pseudonocardia sp. HH130630-07 1298 species 1690815 0 1 0 1096868 species 1 1010 Pseudonocardia sp. EC080625-04 1 0 species 1641402 Pseudonocardia sp. HH130629-09 1245 Pseudonocardia sp. AL041005-10 1382 1 445576 species 0 species 1096856 0 1 Pseudonocardia sp. EC080619-01 1094 1 1688404 species 0 1095 Pseudonocardia sp. EC080610-09 Pseudonocardia dioxanivorans 1534 1 species 240495 0 genus 1813 0 7 12632 Amycolatopsis 230 1 Amycolatopsis methanolica 1737 1 1814 species 0 3340 0 2618356 no rank 2 1 0 species 1896961 Amycolatopsis sp. AA4 1796 1 1911175 species 0 1544 Amycolatopsis sp. BJA-103 1 0 species 208439 1600 Amycolatopsis japonica 3179 Amycolatopsis orientalis 1 0 species 31958 2546 Amycolatopsis mediterranei 33910 species 0 1 674734 genus 0 2 Alloactinosynnema 1417 15 1 1 no rank 2636053 0 1402 1402 Alloactinosynnema sp. L-07 species 1653480 0 1 1 1915 Lentzea 6 2 165301 genus 0 1909 Lentzea guizhouensis 0 1586287 species 1 2029 genus 0 2 1841 Kibdelosporangium 8 1 0 species 860235 1 Kibdelosporangium phytohabitans 1833 2 genus 43356 0 1 Kutzneria 2350 8 Kutzneria albida 2342 1 0 43357 species 4410 Actinosynnema 114 1 40566 genus 0 3 Actinosynnema pretiosum 2068 1 42197 species 0 1 0 40567 species 2228 Actinosynnema mirum 6 0 genus 65496 1 92 Actinoalloteichus 6015 1136 Actinoalloteichus hoggarensis 1 species 1470176 0 0 species 1612552 1 1302 Actinoalloteichus sp. ADI127-7 962 Actinoalloteichus hymeniacidonis 1 0 340345 species 2523 0 2644606 no rank 2 0 species 2072503 1 1213 Actinoalloteichus sp. AHMU CJ021 Actinoalloteichus sp. GBA129-24 1310 1 0 1612551 species 116952 Micrococcales 1159 1 order 85006 0 148 3 family 125316 0 1 1004 Beutenbergiaceae 6 1 19 Beutenbergia 998 2 0 84756 genus 979 Beutenbergia cavernae 0 84757 species 1 122 2 0 577468 no rank 2038 genus 0 2 Tropheryma 122 4 1 Tropheryma whipplei 118 1 0 species 2039 1 27 2103 Brevibacteriaceae 3 0 85019 family 2 0 1696 genus 1 41 Brevibacterium 2076 1 1703 species 0 2035 Brevibacterium linens 9 family 85017 0 1 Promicromonosporaceae 6885 56 2798 Cellulosimicrobium 45 1 157920 genus 0 3 1284 Cellulosimicrobium cellulans 1710 species 0 1 1469 0 no rank 2624466 1 1469 Cellulosimicrobium sp. TH-20 1 0 species 1980001 186188 genus 0 2 Xylanimonas 1499 23 1 Xylanimonas cellulosilytica 1476 species 186189 0 1 1 2532 Isoptericola 61 3 genus 254250 0 1 0 species 372663 Isoptericola dokdonensis 1178 Isoptericola variabilis 1293 1 species 139208 0 0 85020 family 11 68 Dermabacteraceae 8464 1 7 739 Dermabacter 1 0 genus 36739 2 Dermabacter vaginalis 732 0 species 1630135 1 6 genus 43668 0 1 Brachybacterium 7200 149 Brachybacterium sp. VM2412 1326 1 0 species 2017484 0 1331682 species 1 1418 Brachybacterium ginsengisoli 1 0 no rank 2623841 1525 1525 Brachybacterium sp. P6-10-X1 1 species 1903186 0 1523 Brachybacterium faecium 1 0 43669 species 0 2017485 species 1 Brachybacterium sp. VR2415 1259 Devriesea 457 3 1 genus 472568 0 2 0 472569 species 1 Devriesea agamarum 454 Cellulomonadaceae 5409 48 1 family 85016 0 6 1707 genus 0 5 Cellulomonas 5361 130 1 species 1708 0 1 1612 Cellulomonas fimi 1372 Cellulomonas flavigena 0 species 1711 1 2620175 no rank 0 1 1235 1 species 2003551 0 Cellulomonas sp. PSBB021 1235 Cellulomonas gilvus 1012 0 11 species 1 3 145360 family 0 1 1454 Sanguibacteraceae 18 2 genus 60919 0 1 1436 Sanguibacter 47 0 60920 species 1 Sanguibacter keddieii 1389 137 Intrasporangiaceae 5211 1 0 85021 family 9 267408 genus 0 2 1591 Arsenicicoccus 25 1 1 no rank 2663846 0 1566 1 species 1658671 0 Arsenicicoccus sp. oral taxon 190 1566 genus 53457 0 2 Janibacter 1039 38 1 1 0 857417 species Janibacter indicus 1001 1 970 Intrasporangium 55 2 53357 genus 0 Intrasporangium calvum 915 1 0 53358 species 1474 Serinicoccus 22 1 genus 265976 0 2 0 1758689 species 1 1452 Serinicoccus sp. JLT9 family 85018 0 3 452 Dermatophilaceae 1 1 2 0 1862 genus 1 3 Dermatophilus 451 Dermatophilus congolensis 448 0 species 1863 1 0 145357 family 7 81 3670 Dermacoccaceae 1 2 genus 745364 0 1 1421 Luteipulveratus 19 571913 species 0 1 Luteipulveratus mongoliensis 1402 0 57499 genus 2 11 Kytococcus 1099 1 1276 species 0 1 1088 Kytococcus sedentarius 2 genus 57495 0 1 1069 Dermacoccus 12 species 1274 0 1 Dermacoccus nishinomiyaensis 1057 39 1268 family 0 1 43357 Micrococcaceae 2195 698 0 genus 2078575 1 0 species 1618207 1 Arthrobacter sp. IHBB 11108 698 0 genus 596707 2 22 1163 Sinomonas 1 Sinomonas atrocyanea 1141 1 37927 species 0 2 0 genus 1868332 1 23 1332 Neomicrococcus 0 species 556325 1 Neomicrococcus aestuarii 1309 1 33 Micrococcus 1435 2 0 1269 genus 1 1270 species 0 1402 Micrococcus luteus genus 1663 0 15 18835 Arthrobacter 522 1 species 656366 0 1 2098 Arthrobacter alpinus Arthrobacter crystallopoietes 1422 1 0 37928 species 235627 no rank 0 12 14793 1066 Arthrobacter sp. PAMC 25486 1494608 species 0 1 Arthrobacter sp. LS16 1793 species 1690248 0 1 Arthrobacter sp. YC-RL1 2044 1652545 species 0 1 1 0 2079227 species Arthrobacter sp. PGP41 1156 1174 Arthrobacter sp. ERGS1:01 1 species 1704044 0 1017 Arthrobacter sp. ZXY-2 1 species 1806905 0 1 1771959 species 0 Arthrobacter sp. ATCC 21022 831 1 0 species 1118963 Arthrobacter sp. Rue61a 793 Arthrobacter sp. QXT-31 1398 1 1357915 species 0 1361 Arthrobacter sp. FB24 1 0 species 290399 977 Arthrobacter sp. YN 1 species 2020486 0 0 species 1849032 1 1183 Arthrobacter sp. U41 genus 1742989 0 2 Glutamicibacter 1753 7 1 1746 Glutamicibacter arilaitensis 1 256701 species 0 1742992 genus 0 2 Paenarthrobacter 1008 7 1 species 43663 0 1 Paenarthrobacter aurescens 1001 1 14 6547 Rothia 3 0 32207 genus 627 Rothia dentocariosa species 2047 0 1 43675 species 0 1 Rothia mucilaginosa 5906 460 0 1645 genus 1 1 0 species 1646 460 Renibacterium salmoninarum Pseudarthrobacter 3988 45 1 genus 1742993 0 4 Pseudarthrobacter phenanthrenivorans 1236 species 361575 0 1 1402 Pseudarthrobacter sulfonivorans 1 0 species 121292 0 85085 species 1 Pseudarthrobacter chlorophenolicus 1305 57493 genus 0 4 3943 Kocuria 77 1 1243 Kocuria palustris 71999 species 0 1 0 species 72000 1 Kocuria rhizophila 1256 Kocuria flava 1367 1 446860 species 0 85022 family 0 3 Jonesiaceae 378 1 1 2 0 genus 43673 1 21 Jonesia 377 1 species 43674 0 356 Jonesia denitrificans 1 523 Microbacteriaceae 37284 49 0 85023 family 1759331 genus 0 2 Cnuibacter 1161 3 1 1158 Cnuibacter physcomitrellae 0 1619308 species 1 2 337004 genus 0 1 680 Microcella 4 Microcella alkaliphila 676 1 279828 species 0 3004 Cryobacterium 130 1 genus 69578 0 3 0 no rank 2649013 1 1404 Cryobacterium sp. LW097 1404 1 0 species 1978566 0 670052 species 1 Cryobacterium arcticum 1470 0 genus 33882 14 374 Microbacterium 15125 1 1039 Microbacterium testaceum 1 species 2033 0 8 no rank 2609290 0 9097 1 species 2103230 0 Microbacterium sp. str. 'China' 1355 0 1696072 species 1 Microbacterium sp. CGR1 962 1 0 species 1916917 Microbacterium sp. 1.5R 1020 1 species 1906742 0 Microbacterium sp. BH-3-3-3 1213 969 Microbacterium sp. XT11 0 367477 species 1 0 species 1938334 1 949 Microbacterium sp. TPU 3598 0 1795053 species 1 1349 Microbacterium sp. PAMC 28756 0 1714373 species 1 Microbacterium sp. No. 7 1280 species 162426 0 1 Microbacterium hominis 1338 1332 Microbacterium aurum 0 species 36805 1 species 300019 0 1 1232 Microbacterium paludicola 713 Microbacterium chocolatum 1 0 84292 species 361 1 0 1705353 genus Aurantimicrobium minutum 361 1 0 708131 species 2 0 33877 genus 1 5 1425 Agromyces 1420 Agromyces aureus 1 species 453304 0 33886 genus 0 3 Rathayibacter 1273 9 1 Rathayibacter tritici 904 0 33888 species 1 0 145458 species 1 Rathayibacter toxicus 360 0 genus 1573 6 209 4651 Clavibacter 1 5 0 species 28447 1 779 Clavibacter michiganensis 4442 887 Clavibacter capsici 1874630 subspecies 0 1 983 Clavibacter sepedonicus 1 31964 subspecies 0 898 Clavibacter insidiosus 0 33014 subspecies 1 Clavibacter nebraskensis 895 31963 subspecies 0 1 354 Pontimonas 3 1 1434032 genus 0 2 Pontimonas salivibrio 351 1 0 1159327 species 0 2034 genus 4 104 Curtobacterium 3067 1 1971 2 0 257496 no rank 1 1905847 species 0 978 Curtobacterium sp. BH-2-1-1 993 Curtobacterium sp. MR_MD2014 species 1561023 0 1 1 0 species 69373 Curtobacterium pusillum 992 2 genus 447237 0 1 1181 Frondihabitans 10 no rank 2626248 0 1 1171 Frondihabitans sp. PAMC 28766 1171 1 species 1795630 0 1 1241 Microterricola 6 2 genus 518733 0 1 0 species 412690 Microterricola viridarii 1235 616 3 1655488 no rank 0 0 clade 1655489 3 616 3 0 genus 529883 1 2 Rhodoluna 616 1 0 species 529884 Rhodoluna lacicola 373 241 Candidatus Rhodoluna planktonica 1 535712 species 0 2 0 110932 genus 1 31 Leifsonia 2622 1 0 species 1575 Leifsonia xyli 2591 82 85011 order 0 1 141344 Streptomycetales 362 140982 Streptomycetaceae 1124 1 2062 family 0 81 0 2063 genus 5 83 8468 Kitasatospora 1 Kitasatospora aureofaciens 2021 1 1894 species 0 1905 Kitasatospora albolonga 0 68173 species 1 2633591 no rank 0 1 2330 Kitasatospora sp. MMS16-BH015 2330 1 2018025 species 0 species 2066 0 1 2129 Kitasatospora setae 75 0 genus 1883 1 5027 131390 Streptomyces 1 species 1914 0 Streptomyces lavendulae 1588 Streptomyces noursei 1398 1971 species 0 1 37139 no rank 2593676 0 24 Streptomyces sp. CdTB01 1767 0 1725411 species 1 1614 Streptomyces sp. Sge12 1 0 1972846 species Streptomyces sp. M56 1959 0 species 1495638 1 0 1964449 species 1 Streptomyces sp. 3211 1592 Streptomyces sp. PAMC 26508 1100 1 species 1265601 0 Streptomyces sp. MOE7 1532 species 1961713 0 1 Streptomyces sp. 4F 1490 1 1751294 species 0 1 444103 species 0 1832 Streptomyces sp. CNQ-509 1 0 species 2059884 Streptomyces sp. CMB-StM0423 2053 Streptomyces sp. TN58 1214 0 species 234612 1 1 0 1812480 species Streptomyces sp. fd1-xmd 1739 0 1849967 species 1 Streptomyces sp. SAT1 1498 0 465541 species 1 Streptomyces sp. Mg1 1675 species 1837283 0 1 1247 Streptomyces sp. S8 species 862751 0 1 Streptomyces sp. SirexAA-E 1233 1337 Streptomyces sp. CFMR 7 1 species 1649184 0 1 0 species 1262452 Streptomyces sp. 769 1736 species 1661694 0 1 1431 Streptomyces sp. Tue 6075 species 1841249 0 1 1994 Streptomyces sp. RTd22 1579 Streptomyces sp. P3 2135430 species 0 1 species 1984801 0 1 1467 Streptomyces sp. CLI2509 1 0 species 1561022 Streptomyces sp. CCM_MD2014 1245 1159 Streptomyces sp. WAC00288 0 2094021 species 1 Streptomyces sp. FR-008 1646 species 206662 0 1 Streptomyces clavuligerus 1681 1 0 1901 species 1 0 species 379067 Streptomyces bingchenggensis 2224 Streptomyces xiamenensis 1530 1 0 408015 species 1 54571 species 0 2738 Streptomyces venezuelae Streptomyces ambofaciens 1351 0 species 1889 1 Streptomyces lividans 1647 1 species 1916 0 Streptomyces cattleya 1908 0 species 29303 1 2647 2 0 629295 species group 1 1482596 species subgroup 0 1416 1416 Streptomyces griseus 1 0 species 1911 1482558 species subgroup 0 1 1231 Streptomyces globisporus 1231 1 0 1908 species 1 species 68249 0 2744 Streptomyces pactum 1492 Streptomyces cyaneogriseus 1 species 68192 0 Streptomyces niveus 1450 1 species 193462 0 species 1950 0 1 1351 Streptomyces peucetius 0 47763 species 1 Streptomyces lydicus 4635 1 species 1915 0 1586 Streptomyces lincolnensis 1 species 75293 0 1770 Streptomyces autolyticus Streptomyces pratensis 1169 0 species 1169025 1 1492 Streptomyces parvulus 1 146923 species 0 1314 Streptomyces fulvissimus 1 68202 species 0 Streptomyces leeuwenhoekii 1704 species 1437453 0 1 1639 Streptomyces xinghaiensis 1 0 species 1038928 68214 species 0 1 Streptomyces griseochromogenes 1534 Streptomyces pristinaespiralis 1627 0 38300 species 1 1972 Streptomyces alfalfae 0 species 1642299 1 species 42684 0 1 Streptomyces collinus 1528 Streptomyces vietnamensis 1947 362257 species 0 1 species 92644 0 1 Streptomyces malaysiensis 1879 Streptomyces avermitilis 1753 0 33903 species 1 0 species 1969 1 Streptomyces chartreusis 2365 1 species 1940 0 1485 Streptomyces albireticuli Streptomyces formicae 1684 0 1616117 species 1 1608 Streptomyces glaucescens 1 1907 species 0 1532 Streptomyces albulus 0 68570 species 1 species 67267 0 1 Streptomyces alboflavus 1649 Streptomyces hygroscopicus 4011 0 1912 species 1 1343 Streptomyces sp. S10(2016) 1 1783515 species 0 Streptomyces reticuli 1635 species 1926 0 1 1030 Streptomyces pluripotens 1355015 species 0 1 Streptomyces albus 3195 0 1888 species 1 1 2049881 species 0 1703 Streptomyces sp. XZHG99 1353 Streptomyces violaceoruber species 1935 0 1 1 0 164348 species Streptomyces puniciscabiei 1685 0 68280 species 1 Streptomyces violaceusniger 1921 Streptomyces rubrolavendulae 1281 1 0 species 285473 Streptomyces scabiei 1777 0 1930 species 1 Streptomyces gilvosporeus 1523 0 species 553510 1 3146 2 1477431 species group 0 species 1902 0 1 Streptomyces coelicolor 1570 1576 Streptomyces sampsonii 1 42239 species 0 0 order 622450 4 1 Actinopolysporales 1111 1 family 622451 0 3 Actinopolysporaceae 1110 14 1 1 18 Actinopolyspora 1096 2 0 genus 1849 1 414996 species 0 1078 Actinopolyspora erythraea 0 order 2039638 12 31 3445 Candidatus Nanopelagicales 1 11 0 2162846 family 3414 0 genus 2039639 4 16 Candidatus Nanopelagicus 665 1 214 Candidatus Nanopelagicus hibericus 0 1884915 species 1 1 species 1884634 0 Candidatus Nanopelagicus limnes 155 Candidatus Nanopelagicus abundans 280 0 1884916 species 1 Candidatus Planktophila 2749 28 1 622681 genus 0 7 Candidatus Planktophila dulcis 618 0 species 1884914 1 606 Candidatus Planktophila lacus species 1884913 0 1 0 species 573600 1 Candidatus Planktophila limnetica 259 640 Candidatus Planktophila versatilis species 1884905 0 1 1 species 1884907 0 Candidatus Planktophila vernalis 310 1 species 1884904 0 288 Candidatus Planktophila sulfonica 0 order 622452 4 4 Kineosporiales 1643 1 1 46 Kineosporiaceae 1639 3 0 family 83778 1 Kineococcus 1593 2 2 genus 33981 0 131568 species 0 1 Kineococcus radiotolerans 1591 85008 order 0 20 Micromonosporales 23069 113 1 19 28056 family 0 1 Micromonosporaceae 22956 351 3 0 genus 168694 1 40 2133 Salinispora 1 0 168695 species Salinispora tropica 1097 1 0 species 168697 Salinispora arenicola 996 4 0 genus 1873 1 77 5184 Micromonospora Verrucosispora maris 1296 1 0 1003110 species Micromonospora aurantiaca 1749 0 47850 species 1 1 no rank 2617518 0 2062 2062 Micromonospora sp. L5 0 648999 species 1 1 0 genus 84593 Verrucosispora 8 6 1865 genus 0 1 10018 Actinoplanes 185 2040 Actinoplanes missouriensis 0 species 1866 1 0 species 196914 1 Actinoplanes friuliensis 2006 5787 3 0 2626549 no rank Actinoplanes sp. SE50/110 1657 0 134676 species 1 species 2033844 0 1 Actinoplanes sp. SE50 1657 1 species 649831 0 2473 Actinoplanes sp. N902-109 0 673534 genus 4 91 Plantactinospora 5262 1 5171 no rank 2631981 0 3 Plantactinospora sp. BC1 1737 1 0 2108470 species 1794 Plantactinospora sp. KBS50 1 0 species 2024580 1 0 species 2071627 Plantactinospora sp. BB1 1640 1 20 Catenulisporales 2722 4 0 414714 order 414877 family 0 3 Catenulisporaceae 2702 71 1 0 genus 414878 2 32 2631 Catenulispora 1 304895 species 0 1 2599 Catenulispora acidiphila 452 3 order 1643683 0 3 family 85032 0 1 Acidothermaceae 452 7 Acidothermus 445 6 1 28048 genus 0 2 1 28049 species 0 Acidothermus cellulolyticus 439 1 9 4598 Geodermatophilales 8 0 1643682 order 7 85030 family 0 1 Geodermatophilaceae 4589 130 Geodermatophilus 1591 33 1 genus 1860 0 2 1 0 species 1861 1558 Geodermatophilus obscurus 1 37 Modestobacter 1677 2 0 88138 genus 1640 Modestobacter marinus 1 0 species 477641 1 21 Blastococcus 1191 2 0 genus 38501 Blastococcus saxobsidens 1170 1 species 138336 0 1000 no rank 1752188 0 4 206 Actinobacteria bacterium IMCC26103 0 1848756 species 1 255 Actinobacteria bacterium IMCC25003 1 1848255 species 0 species 1848754 0 1 Actinobacteria bacterium IMCC19121 216 Actinobacteria bacterium IMCC26077 323 1 0 species 1848755 20378 45 0 200795 phylum 36 Thermomicrobia 2787 1 0 189775 class 9 2105 0 85000 subclass 4 1 2105 Sphaerobacterales 33 4 85001 order 0 3 0 255728 suborder 2072 1 2072 Sphaerobacteraceae 19 3 family 85002 0 0 2056 genus 2 8 2053 Sphaerobacter 1 Sphaerobacter thermophilus 2045 1 0 2057 species 1 Thermomicrobiales 646 9 4 189776 order 0 3 0 family 189777 1 3 Thermomicrobiaceae 637 2 0 genus 499 1 2 Thermomicrobium 634 Thermomicrobium roseum 632 500 species 0 1 0 475962 class 5 25 1864 Caldilineae 1 17 1839 Caldilineales 1 0 475963 order 4 1 1822 Caldilineaceae 9 3 475964 family 0 2 0 233191 genus 1 56 1813 Caldilinea 133453 species 0 1 1757 Caldilinea aerophila 1 Anaerolineae 4219 17 7 class 292625 0 1 40 Anaerolineales 4202 6 0 order 292629 5 0 292628 family 1 11 4162 Anaerolineaceae 1295 genus 233189 0 1 Anaerolinea thermophila 1295 1 167964 species 0 4 Brevefilum 942 1 0 2019482 genus 2 1 species 1986204 0 Brevefilum fermentans 938 1914 0 1324991 no rank 1 1 species 1889813 0 1914 Anaerolineaceae bacterium oral taxon 439 1382928 class 0 5 Ardenticatenia 2920 47 1 1 32 Ardenticatenales 2873 4 0 1382929 order 0 1382930 family 3 23 2841 Ardenticatenaceae 1 0 genus 1988031 2 25 2818 Candidatus Promineofilum 1 Candidatus Promineofilum breve 2793 species 1806508 0 1 11 0 class 32061 1 14 4177 Chloroflexia order 32064 0 10 4163 Chloroflexales 74 1 2425 4 0 suborder 1508595 family 1508635 0 4 Roseiflexaceae 2425 22 1 3 0 genus 120961 1 5 2403 Roseiflexus 1 species 120962 0 Roseiflexus castenholzii 1157 1241 1 0 2609473 no rank Roseiflexus sp. RS-1 1241 0 species 357808 1 5 suborder 1508594 0 1664 Chloroflexaceae 1664 2 1 1106 family 0 5 0 1107 genus 4 28 1662 Chloroflexus 1 1 587 1167 Chloroflexus aurantiacus 2 0 1108 species 1 0 strain 480224 Chloroflexus sp. Y-400-fl 580 467 Chloroflexus aggregans 0 152260 species 1 1 19 Dehalococcoidia 4411 8 0 301297 class 3 genus 670486 0 1 2079 Dehalogenimonas 19 1482 Dehalogenimonas formicexedens 1839801 species 0 1 1 0 species 552810 Dehalogenimonas lykanthroporepellens 578 4 1202465 order 0 1 Dehalococcoidales 2313 8 2305 3 0 family 1202464 3 genus 61434 0 1 2305 Dehalococcoides 6 1 61435 species 0 1769 Dehalococcoides mccartyi 0 237581 no rank 1 530 1522671 species 0 1 530 Dehalococcoides sp. UCH007 498 Firmicutes 15086195 1 0 1239 phylum 725 1 432 970821 Bacilli 434 0 class 91061 267 1385 order 0 1 437228 Bacillales 1088 62 10239 Alicyclobacillaceae 1 0 family 186823 9 29330 genus 0 2 2836 Alicyclobacillus 10 1 2826 Alicyclobacillus acidocaldarius 0 405212 species 1 3 0 genus 432330 1 36 Tumebacillus 4960 1 1214604 species 0 1856 Tumebacillus algifaecis 3068 Tumebacillus avium 1 1903704 species 0 1 38 Kyrpidia 2381 3 0 1129704 genus 1 species 2055160 0 Kyrpidia sp. EA-1 1253 species 33943 0 1 1090 Kyrpidia tusciae 252 28444 Planococcaceae 1 0 family 186818 27 0 genus 1649 2 1 Kurthia 1940 1 1 2644826 no rank 0 1939 Kurthia sp. 11kri321 1939 1 0 species 1750719 0 genus 157226 2 5 Jeotgalibacillus 1758 1 1 0 species 1508404 Jeotgalibacillus malaysiensis 1753 12 0 genus 1372 1 323 11904 Planococcus Planococcus faecalis 824 1598147 species 0 1 1 species 1215089 0 Planococcus halocryophilus 932 977 Planococcus sp. L10.15 1 0 species 1302659 0 1038856 species 1 Planococcus plakortidis 982 192421 species 0 1 Planococcus maritimus 2117 1 species 200991 0 1029 Planococcus rifietoensis 1801 no rank 2662419 0 2 1526927 species 0 1 Planococcus sp. PAMC 21323 814 0 2058136 species 1 987 Planococcus sp. MB-3u-03 0 species 1374 1 860 Planococcus kocurii Planococcus antarcticus 804 1 species 161360 0 Planococcus donghaensis 1255 0 species 414778 1 3933 Solibacillus 15 1 genus 648800 0 3 1653 1 no rank 2637870 0 1653 Solibacillus sp. R5-41 1 0 species 2048654 Solibacillus silvestris 2265 1 species 76853 0 5 1569 genus 0 1 Sporosarcina 7260 59 2313 2 0 2647733 no rank 1110 Sporosarcina sp. P33 1 species 1930764 0 1203 Sporosarcina sp. P37 0 1930546 species 1 3435 Sporosarcina ureae 1571 species 0 1 1 0 1476 species 1453 Sporosarcina psychrophila 1 1397 Rummeliibacillus 4 2 648802 genus 0 Rummeliibacillus stabekisii 1393 1 0 species 241244 8 no rank 539002 0 8319 6474 7 539742 no rank 0 7 0 genus 33986 1 219 Exiguobacterium 6474 1 0 species 332410 977 Exiguobacterium sibiricum 4 0 no rank 2644629 4538 1030 Exiguobacterium sp. AT1b 1 360911 species 0 1318 Exiguobacterium sp. U13-1 0 1849031 species 1 species 1224749 0 1 Exiguobacterium sp. ZWU0009 1387 803 Exiguobacterium sp. MH3 0 1399115 species 1 Exiguobacterium antarcticum 740 1 132920 species 0 539738 no rank 0 1 1845 1845 0 1378 genus 1 no rank 2624949 0 1 1845 0 1785995 species 1 1845 Gemella sp. oral taxon 928 Staphylococcaceae 65967 3465 1 90964 family 0 42 0 genus 1279 33 1472 Staphylococcus 54996 1 1 0 species 985002 1242 Staphylococcus argenteus 1417 Staphylococcus felis 1 0 species 46127 1 0 species 29384 1197 Staphylococcus kloosii Staphylococcus simiae 1706 0 308354 species 1 Staphylococcus aureus 5568 1280 species 0 1 0 species 1296 1 1984 Staphylococcus sciuri 0 29385 species 1 1449 Staphylococcus saprophyticus Staphylococcus capitis 1598 1 species 29388 0 Staphylococcus xylosus 2267 0 species 1288 1 Staphylococcus muscae 868 1 1294 species 0 Staphylococcus hyicus 973 0 1284 species 1 Staphylococcus agnetis 1131 1 species 985762 0 283734 species 0 1 2169 Staphylococcus pseudintermedius 70258 species 0 1 1332 Staphylococcus piscifermentans Staphylococcus succinus 1066 1 61015 species 0 1910 Staphylococcus equorum species 246432 0 1 Staphylococcus simulans 1887 species 1286 0 1 Staphylococcus warneri 1857 1 0 1292 species 1198 Staphylococcus cohnii 1 29382 species 0 1258 Staphylococcus nepalensis 1 species 214473 0 0 70255 species 1 Staphylococcus condimenti 1446 1362 Staphylococcus carnosus species 1281 0 1 Staphylococcus pasteuri 3109 1 45972 species 0 Staphylococcus lutrae 884 0 species 155085 1 Staphylococcus hominis 1522 1 1290 species 0 0 species 170573 1 922 Staphylococcus pettenkoferi 0 no rank 91994 1 1305 Staphylococcus sp. AntiMn-1 1305 0 1715860 species 1 Staphylococcus haemolyticus 1556 0 1283 species 1 1940 Staphylococcus schleiferi 1295 species 0 1 1611 Staphylococcus stepanovicii 0 643214 species 1 0 1282 species 1 2570 Staphylococcus epidermidis 1220 Staphylococcus lugdunensis 0 species 28035 1 0 genus 2005363 2 7 588 Auricoccucs 1 1 0 species 1849491 Auricoccus indicus 581 41 Macrococcus 5155 1 0 69965 genus 4 1 no rank 2619255 0 1553 1 1898474 species 0 Macrococcus sp. IME1552 1553 1 0 1855823 species Macrococcus canis 1622 Macrococcus caseolyticus 1939 1 0 69966 species 5 1763 Salinicoccus 1 0 genus 45669 2 Salinicoccus halodurans 1758 0 407035 species 1 195728 Bacillaceae 790 1 186817 family 0 119 4372 2 2675229 genus 0 Bacillus simplex 3017 1478 species 0 1 1355 Bacillus muralis 0 264697 species 1 1 115 Virgibacillus 8946 7 0 genus 84406 Virgibacillus halodenitrificans 1486 0 1482 species 1 1621 Virgibacillus necropolis 1 0 163877 species 1468 Virgibacillus pantothenticus species 1473 0 1 Virgibacillus phasianinus 1244 1 0 species 2017483 3012 2620237 no rank 0 2 Virgibacillus sp. 6R 1815 1 1911587 species 0 1 403957 species 0 Virgibacillus sp. SK37 1197 2 genus 351195 0 1 Salimicrobium 1469 2 0 1230341 species 1 1467 Salimicrobium jeotgali 1 13762 Geobacillus 829 15 genus 129337 0 4158 4 species group 1505648 0 0 1462 species 1 490 Geobacillus kaustophilus Geobacillus thermocatenulatus 917 33938 species 0 1 904 Geobacillus lituanicus species 169283 0 1 Geobacillus thermoleovorans 1847 0 33941 species 1 1 0 1921421 species Geobacillus genomosp. 3 1060 1077 Geobacillus stearothermophilus 1 species 1422 0 4236 6 0 no rank 2642459 Geobacillus sp. GHH01 400 0 1233873 species 1 691437 species 0 1 Geobacillus sp. C56-T3 599 1320 Geobacillus sp. WCH70 0 species 471223 1 0 species 581103 1 1161 Geobacillus sp. Y4.1MC1 434 Geobacillus sp. Y412MC61 1 0 544556 species 1 0 species 550542 Geobacillus sp. Y412MC52 322 1 0 species 129338 1053 Geobacillus subterraneus 1 33940 species 0 1349 Geobacillus thermodenitrificans 1 1552 Terribacillus 1 0 genus 459532 2 species 586416 0 1 1551 Terribacillus aidingensis 5593 Bacillus 120992 1 0 1386 genus 58 1 0 species 1479 1199 Bacillus smithii species 79883 0 1 1730 Bacillus horikoshii 1 0 135735 species 1941 Bacillus endophyticus 1 0 species group 1792192 1327 0 293387 species 1 1327 Bacillus altitudinis 0 632773 species 1 Bacillus beveridgei 1112 1539 Bacillus flexus 86664 species 0 1 1753 Bacillus weihaiensis species 1547283 0 1 1 1398 species 0 3964 Bacillus coagulans 1 1404 species 0 Bacillus megaterium 4324 Bacillus infantis 2239 1 0 324767 species 33932 species 0 1 Bacillus cohnii 1869 Bacillus aryabhattai 1562 0 species 412384 1 561879 species 0 1 2881 Bacillus safensis 1 1408 species 0 4989 Bacillus pumilus 9 653685 species group 0 21306 1 species 1423 0 Bacillus subtilis 8090 1938374 species subgroup 0 3 6326 1 0 species 659243 865 Bacillus siamensis species 1390 0 1 3027 Bacillus amyloliquefaciens 492670 species 0 1 2434 Bacillus velezensis 0 species 72361 1 Bacillus vallismortis 193 1 0 species 1648923 Bacillus paralicheniformis 1709 1664 Bacillus atrophaeus 1 species 1452 0 1 species 119858 0 1505 Bacillus sonorensis 1402 species 0 1 Bacillus licheniformis 1819 species 1413 0 1 1519 Bacillus cellulosilyticus 1 0 1664069 species Bacillus glycinifermentans 2546 15881 19 0 185979 no rank 1 species 1565991 0 Bacillus sp. X1(2014) 1708 species 2009331 0 1 Bacillus sp. MD-5 553 1315 Bacillus sp. H15-1 species 1856406 0 1 species 1127744 0 1 Bacillus sp. JS 610 Bacillus sp. SJ-10 600 0 563169 species 1 species 1827146 0 1 Bacillus sp. IHB B 7164 1538 398 Bacillus sp. 275 1 species 1941347 0 Bacillus sp. YP1 411 1 0 1574141 species 2049935 species 0 1 Bacillus sp. Lzh-5 167 1 0 1837130 species 955 Bacillus sp. FJAT-14266 1 1446792 species 0 468 Bacillus sp. Pc3 0 species 666686 1 1861 Bacillus sp. 1NLA3E 0 1570330 species 1 166 Bacillus sp. BH072 1278 Bacillus sp. WP8 1 756828 species 0 1314 Bacillus sp. 1s-1 2026248 species 0 1 1 species 1628753 0 Bacillus sp. LM 4-2 199 Bacillus sp. (in: Bacteria) 219 1409 species 0 1 Bacillus sp. OxB-1 1244 1 0 98228 species 877 Bacillus sp. SDLI1 1774743 species 0 1 1585 Bacillus methanolicus 1 species 1471 0 38991 10 species group 86661 0 1396 species 0 1 Bacillus cereus 11323 1 0 1392 species Bacillus anthracis 1110 0 no rank 2750818 3 4615 1274 Bacillus sp. HBCD-sjtu 1 species 2053832 0 1 0 1839798 species 2065 Bacillus sp. FDAARGOS_235 species 1892404 0 1 Bacillus sp. ABP14 1276 12456 Bacillus thuringiensis 1 0 species 1428 1627 Bacillus cytotoxicus 1 0 580165 species 1 0 658666 species 943 Bacillus bombysepticus 1 155322 species 0 1438 Bacillus toyonensis 1 species 1405 0 Bacillus mycoides 5479 840 Bacillus xiamenensis 1 0 species 1178537 0 species 79881 1 Bacillus gibsonii 302 1 8 Parageobacillus 1210 2 0 genus 1906945 Parageobacillus thermoglucosidasius 1202 1 1426 species 0 0 2675230 genus 2 3575 1497 Bacillus kochii species 859143 0 1 2078 Bacillus oceanisediminis 1 0 species 665099 1 31 3177 Fictibacillus 3 0 1329200 genus 1508 Fictibacillus arsenicus 1 0 species 255247 0 species 1221500 1 1638 Fictibacillus phosphorivorans 0 1055323 genus 1 1716 Aeribacillus pallidus 1716 0 species 33936 1 genus 2675234 0 5 8240 Bacillus pseudofirmus 1876 1 species 79885 0 Bacillus lehensis 1511 0 300825 species 1 1 79880 species 0 2123 Bacillus clausii 1 0 species 199441 1784 Bacillus krulwichiae 1 species 86665 0 946 Bacillus halodurans Lysinibacillus 9788 105 1 genus 400634 0 5 1 species 28031 0 Lysinibacillus fusiformis 1866 1848 2636778 no rank 0 1 1848 Lysinibacillus sp. YS11 1 2072025 species 0 Lysinibacillus varians 1630 1 1145276 species 0 4339 Lysinibacillus sphaericus 1 0 species 1421 2436 0 29331 genus 1 species 1449 0 1 2436 Amphibacillus xylanus 182709 genus 0 2 Oceanobacillus 2737 7 1 species 182710 0 1 2730 Oceanobacillus iheyensis 3 45667 genus 0 1 2805 Halobacillus 9 1570 species 0 1 Halobacillus halophilus 1586 1 0 species 402384 Halobacillus mangrovi 1210 2 175304 genus 0 1 Lentibacillus 1383 4 1 0 1472767 species Lentibacillus amyloliquefaciens 1379 6 0 genus 150247 1 73 Anoxybacillus 6778 0 no rank 2639704 2 2597 1283 Anoxybacillus sp. B7M1 1 0 species 1490057 Anoxybacillus sp. B2M1 1314 1490052 species 0 1 1194 Anoxybacillus amylolyticus 1 294699 species 0 Anoxybacillus gonensis 1034 species 198467 0 1 1 0 species 33934 Anoxybacillus flavithermus 1880 186824 family 0 4 1623 Thermoactinomycetaceae 6 1 39 1602 Novibacillus 1 0 1677050 genus 2 1 species 1471761 0 Novibacillus thermophilus 1563 1 292635 genus 0 Laceyella 15 1 1677 Sporolactobacillaceae 1 2 186821 family 0 1 663587 no rank 0 1676 species 85683 0 1 1676 [Bacillus] selenitireducens 46 0 186822 family 1 268 Paenibacillaceae 110828 0 44249 genus 36 1042 96656 Paenibacillus 1 13 0 185978 no rank 33102 2636 Paenibacillus sp. 32O-W 1 0 1695218 species 1 species 1536773 0 Paenibacillus sp. FSL R7-0331 3400 Paenibacillus sp. FSL H7-0737 2350 1 1536775 species 0 species 324057 0 1 Paenibacillus sp. JDR-2 2791 3301 Paenibacillus sp. FSL R7-0273 species 1536772 0 1 481743 species 0 1 Paenibacillus sp. Y412MC10 2333 0 1870819 species 1 Paenibacillus sp. BIHB4019 2097 Paenibacillus sp. lzh-N1 1474 1 0 2069255 species 1 0 1536774 species Paenibacillus sp. FSL H7-0357 3081 species 1566358 0 1 Paenibacillus sp. IHBB 10380 1434 species 1536771 0 1 Paenibacillus sp. FSL R5-0912 3012 0 1536769 species 1 3582 Paenibacillus sp. FSL P4-0081 1 1536770 species 0 Paenibacillus sp. FSL R5-0345 1611 Paenibacillus stellifer 3886 0 169760 species 1 species 61624 0 1 4853 Paenibacillus mucilaginosus 0 59893 species 1 1792 Paenibacillus peoriae 6307 Paenibacillus polymyxa species 1406 0 1 1 0 189426 species Paenibacillus odorifer 1522 2812 Paenibacillus ihbetae 1 0 species 1870820 162209 species 0 1 Paenibacillus naphthalenovorans 2149 Paenibacillus durus 4469 44251 species 0 1 2241 Paenibacillus beijingensis 0 species 1126833 1 1 0 species 160799 Paenibacillus borealis 3713 Paenibacillus larvae 2209 1 0 1464 species 0 2044880 species group 1 3689 Paenibacillus riograndensis 3689 0 species 483937 1 2571 Paenibacillus sabinae 365617 species 0 1 0 species 414771 1 Paenibacillus donghaensis 3693 1 0 189425 species Paenibacillus graminis 3010 1 0 1763538 species 1170 Paenibacillus crassostreae 1540 Paenibacillus swuensis 1 1178515 species 0 1 1616788 species 0 2463 Paenibacillus bovis Paenibacillus yonginensis 2691 1 0 species 1462996 Paenibacillus kribbensis 1731 1 0 172713 species species 528191 0 1 Paenibacillus xylanexedens 2230 0 159743 species 1 Paenibacillus terrae 1771 2 0 genus 76632 1 25 4197 Thermobacillus Thermobacillus composti 4172 0 species 377615 1 no rank 85151 0 3 3237 0 55079 genus 3 32 Aneurinibacillus 3237 1 1 1500254 species 0 Aneurinibacillus soli 1907 1 no rank 2642329 0 1298 Aneurinibacillus sp. XH2 1298 1 1450761 species 0 1 Brevibacillus 6470 36 4 55080 genus 0 0 species 1393 1 Brevibacillus brevis 2369 Brevibacillus laterosporus 2691 1 1465 species 0 1374 Brevibacillus formosus 0 54913 species 1 0 family 186820 9 109 13315 Listeriaceae 1 0 2755 genus 2 3 Brochothrix 2547 1 1 0 2756 species 2544 Brochothrix thermosphacta 0 genus 1637 6 87 10659 Listeria 1 species 1642 0 1 1614 Listeria innocua 1640 species 0 1 1332 Listeria seeligeri 2317 Listeria ivanovii 1 0 1638 species Listeria monocytogenes 3807 0 species 1639 1 1 0 1643 species Listeria welshimeri 1502 0 186826 order 166 8444 Lactobacillales 533161 1 family 81852 0 20 81434 Enterococcaceae 96 1 21 Vagococcus 3243 1 0 2737 genus 3 species 633807 0 1 1408 Vagococcus penaei 1814 Vagococcus teuberi 1 0 519472 species 0 51668 genus 2 4 2426 Tetragenococcus 1 1 0 species 51669 2422 Tetragenococcus halophilus 1 Melissococcus 2101 2 2 33969 genus 0 2099 Melissococcus plutonius 1 0 33970 species 0 1350 genus 12 3781 73568 Enterococcus 1 Enterococcus faecalis 8252 1 species 1351 0 1 0 species 37734 Enterococcus casseliflavus 1227 1921 Enterococcus hirae 1 0 species 1354 1 53345 species 0 Enterococcus durans 2360 Enterococcus thailandicus 1593 417368 species 0 1 no rank 2608891 0 3 4308 1 0 2060306 species Enterococcus sp. FDAARGOS_163 1410 1 0 species 2057791 Enterococcus sp. CR-Ec1 1441 Enterococcus sp. FDAARGOS_375 1457 1 0 2060307 species 1875 Enterococcus wangshanyuanii 1 0 2005703 species 1663 Enterococcus mundtii 1 53346 species 0 46588 Enterococcus faecium 1 species 1352 0 0 1300 family 49 8144 Streptococcaceae 320793 1 1301 genus 0 43 Streptococcus 303365 6325 1 Streptococcus oralis 4813 1 0 species 1303 1302 species 0 1 3495 Streptococcus gordonii species 28037 0 1 4451 Streptococcus mitis 1999 Streptococcus parauberis 1 0 1348 species 63667 Streptococcus agalactiae 1311 species 0 1 3879 0 119603 species group 2 Streptococcus dysgalactiae 1299 1 1334 species 0 2580 Streptococcus equi 0 1336 species 1 1263 Streptococcus uberis 1 species 1349 0 0 species 1811193 1 1153 Streptococcus pantholopis 867 Streptococcus halotolerans 1 1814128 species 0 species 1335 0 1 Streptococcus equinus 2512 0 species 1318 1 Streptococcus parasanguinis 4962 Streptococcus infantarius 5738 1 0 102684 species 1 0 species 1888195 787 Streptococcus himalayensis 1 0 315405 species 3048 Streptococcus gallolyticus Streptococcus pneumoniae 3222 1 species 1313 0 0 1304 species 1 13660 Streptococcus salivarius 82348 species 0 1 1058 Streptococcus pluranimalium Streptococcus pseudopneumoniae 1282 0 257758 species 1 Streptococcus sanguinis 1397 0 1305 species 1 1 species 400065 0 Streptococcus merionis 1181 Streptococcus suis 52907 1 0 1307 species 3 0 671232 species group 77077 species 76860 0 1 Streptococcus constellatus 14384 0 1328 species 1 Streptococcus anginosus 56251 Streptococcus intermedius 6442 0 species 1338 1 7 0 2608887 no rank 14272 species 1902136 0 1 1303 Streptococcus sp. NPS 308 1 1319 species 0 Streptococcus sp. 'group B' 1206 2044 Streptococcus sp. I-P16 1 1156433 species 0 Streptococcus sp. I-G2 1917 1 0 species 1156431 1 0 1759399 species Streptococcus sp. A12 1843 0 1839799 species 1 4096 Streptococcus sp. FDAARGOS_192 Streptococcus sp. oral taxon 431 1863 1 712633 species 0 Streptococcus pyogenes 3435 1 species 1314 0 0 species 1308 1 Streptococcus thermophilus 2432 1 species 197614 0 Streptococcus pasteurianus 5820 Streptococcus acidominimus 2764 1 0 species 1326 1787 Streptococcus cristatus 1 species 45634 0 59310 species 0 1 1301 Streptococcus macedonicus Streptococcus mutans 1782 1309 species 0 1 Streptococcus lutetiensis 5027 0 species 150055 1 1 0 1825069 species Streptococcus marmotae 1068 1 0 species 1346 Streptococcus iniae 2934 genus 1357 0 5 Lactococcus 9284 40 1 species 1363 0 1 2077 Lactococcus garvieae 0 species 1364 1 Lactococcus piscium 1340 986 Lactococcus raffinolactis 0 species 1366 1 4841 Lactococcus lactis 1358 species 0 1 1 0 no rank 263855 1252 1993866 species 0 1 1252 Lactobacillales bacterium 18 0 family 81850 1 19 11448 Leuconostocaceae 1 5 871 Oenococcus 2 0 genus 46254 Oenococcus oeni 866 1 1247 species 0 1 18 3920 Weissella 6 0 46255 genus 729 Weissella ceti 0 species 759620 1 620 Weissella paramesenteroides 0 1249 species 1 797 Weissella cibaria 0 species 137591 1 1 0 species 1631871 Weissella jogaejeotgali 913 843 Weissella koreensis 1 165096 species 0 1 65 6638 Leuconostoc 9 0 genus 1243 1669 Leuconostoc mesenteroides 0 1245 species 1 517 Leuconostoc carnosum 1 1252 species 0 Leuconostoc citreum 764 1 0 species 33964 1 1246 species 0 583 Leuconostoc lactis 0 136609 species 1 Leuconostoc kimchii 813 583 Leuconostoc garlicum species 255248 0 1 551 1 2685106 no rank 0 Leuconostoc sp. C2 551 1 979982 species 0 Leuconostoc gelidum 1093 species 1244 0 1 21 9362 Aerococcaceae 1 0 186827 family 8 7 0 1375 genus 1 411 9341 Aerococcus 1 119206 species 0 Aerococcus sanguinicola 1620 species 128944 0 1 916 Aerococcus urinaehominis Aerococcus christensenii 1579 87541 species 0 1 1 species 51665 0 1906 Aerococcus urinaeequi 1 0 1376 species 1436 Aerococcus urinae Aerococcus viridans 1473 1 0 1377 species 32 10053 Carnobacteriaceae 1 0 186828 family 11 6 Jeotgalibaca 2827 1 0 genus 1470540 3 1760 no rank 2621505 0 1 1 species 1903686 0 Jeotgalibaca sp. PTS2502 1760 1061 Jeotgalibaca dankookensis 1 0 species 708126 Marinilactibacillus 1720 13 1 genus 191769 0 2 1 no rank 2632303 0 1707 1707 Marinilactibacillus sp. 15R 0 species 1911586 1 2747 genus 0 5 5474 Carnobacterium 22 1 2070 0 no rank 257487 2 species 208596 0 1 Carnobacterium sp. 17-4 1079 991 Carnobacterium sp. CP1 1 1564681 species 0 0 147709 species 1 Carnobacterium inhibens 1642 species 2751 0 1 Carnobacterium maltaromaticum 1740 58 0 family 33958 1 436 Lactobacillaceae 90375 1 Lactobacillus 29373 3256 16 genus 1578 0 Lactobacillus jensenii 1013 1 0 species 109790 1 0 species 1596 2204 Lactobacillus gasseri 1 0 species 52242 1633 Lactobacillus gallinarum 1632 Lactobacillus acidophilus 1 1579 species 0 0 1600 species 1 1246 Lactobacillus acetotolerans Lactobacillus amylolyticus 819 1 0 83683 species 1587 species 0 1 Lactobacillus helveticus 2679 1 0 33959 species Lactobacillus johnsonii 3541 Lactobacillus kefiranofaciens 890 267818 species 0 1 3173 4 0 no rank 2620435 Lactobacillus sp. CBA3606 929 0 species 2099789 1 0 1545702 species 1 Lactobacillus sp. wkB8 898 Lactobacillus sp. CBA3605 828 0 2099788 species 1 2108362 species 0 1 Lactobacillus sp. D1501 518 0 species 1584 1 3462 Lactobacillus delbrueckii 3825 Lactobacillus amylovorus 1 1604 species 0 1 0 genus 2767890 957 1 0 1193095 species Lactobacillus hokkaidonensis 957 3485 0 genus 2767842 3 1 0 1590 species Lactobacillus plantarum 1864 1 1589 species 0 1063 Lactobacillus pentosus Lactobacillus paraplantarum 558 species 60520 0 1 0 genus 2767877 1 957 0 148814 species 1 957 Lactobacillus kunkeei 2227 2767886 genus 0 3 705 Lactobacillus koreensis 1 0 species 637971 Lactobacillus zymae 529 0 267363 species 1 1 species 1580 0 Lactobacillus brevis 993 1 41 Pediococcus 5263 6 0 1253 genus Pediococcus claussenii 711 species 187452 0 1 Pediococcus damnosus 1180 51663 species 0 1 1051 0 species group 1670797 1 1051 Pediococcus acidilactici 1 1254 species 0 Pediococcus pentosaceus 1294 0 species 1255 1 Pediococcus inopinatus 986 114090 species 0 1 2858 0 genus 2767876 1 2858 Lactobacillus amylophilus 1603 species 0 1 2742598 genus 0 3 4782 1 species 97478 0 1355 Lactobacillus mucosae 1613 species 0 1 1215 Lactobacillus fermentum Lactobacillus reuteri 2212 0 1598 species 1 1009 1 genus 2767892 0 1 0 240427 species 1009 Lactobacillus paracollinoides 2854 0 2767885 genus 2 Lactobacillus sakei 1379 1 0 1599 species 1475 Lactobacillus curvatus 1 0 species 28038 7192 6 0 genus 2767879 1155 Lactobacillus alimentarius 1602 species 0 1 1 0 species 1612 Lactobacillus farciminis 1324 1018 Lactobacillus ginsenosidimutans 1 0 species 1007676 0 1847728 species 1 Lactobacillus allii 1312 1280 Lactobacillus crustorum species 392416 0 1 1074467 species 0 1 Lactobacillus heilongjiangensis 1103 2767887 genus 0 4 16334 1 0 species 89059 1601 Lactobacillus acidipiscis Lactobacillus ruminis 8593 0 species 1623 1 1601 species 0 1 1456 Lactobacillus agilis Lactobacillus salivarius 4684 species 1624 0 1 1578 2 2767881 genus 0 818 Lactobacillus sanfranciscensis 1 1625 species 0 1 0 species 53444 760 Lactobacillus lindneri 0 genus 2767889 2 2091 0 species 1610 1 1076 Lactobacillus coryniformis 1 0 375175 species Lactobacillus backii 1015 3 genus 2759736 0 5536 1582 species 0 1 2364 Lactobacillus casei 1216 Lactobacillus rhamnosus 47715 species 0 1 1956 Lactobacillus paracasei 1 species 1597 0 3443 0 2767893 genus 3 Lactobacillus buchneri 1246 1 species 1581 0 Lactobacillus parabuchneri 821 152331 species 0 1 species 1138822 0 1 Lactobacillus curieae 1376 6 Tissierellia 40440 1 0 1737404 class 19 0 1737407 no rank 2 1309 genus 1582879 0 2 Ezakiella 1309 55 1 1 0 1852374 species 1254 Ezakiella massiliensis Tissierellales 39125 1258 1 order 1737405 0 16 2739 Gottschalkiaceae 5 1 family 2042895 0 3 2 0 1505664 genus 1 7 Gottschalkia 2734 Gottschalkia acidurici 2727 1 species 1556 0 0 1570339 family 12 9213 35128 Peptoniphilaceae 1 2 0 162289 genus 1 19 Peptoniphilus 1594 1 0 2637196 no rank 1575 0 1912856 species 1 1575 Peptoniphilus sp. ING2-D1G 1 31 3516 Parvimonas 2 0 543311 genus 3485 Parvimonas micra 1 33033 species 0 3 0 genus 165779 1 8 Anaerococcus 3874 1 0 1870984 species 1823 Anaerococcus mediterraneensis 2043 Anaerococcus prevotii 0 33034 species 1 17 Finegoldia 3120 1 0 150022 genus 2 Finegoldia magna 3103 0 species 1260 1 13811 Murdochiella 7 1 genus 1161127 0 2 1 0 1852373 species Murdochiella vaginalis 13804 1 Clostridia 13822220 633 221 class 186801 0 43311 Thermoanaerobacterales 75 1 68295 order 0 38 1 22729 Thermoanaerobacteraceae 49 19 family 186814 0 2 249529 genus 0 1 1857 Caldanaerobacter 1 Caldanaerobacter subterraneus 1856 1 0 species 911092 genus 1754 0 9 13781 Thermoanaerobacter 564 1 0 species 46354 1 Thermoanaerobacter wiegelii 1791 1 species 29323 0 Thermoanaerobacter brockii 1518 Thermoanaerobacter pseudethanolicus 1518 species 496866 0 1 1 583357 species 0 1390 Thermoanaerobacter mathranii Thermoanaerobacter italicus 1601 1 0 108150 species 3778 2 2636821 no rank 0 Thermoanaerobacter sp. X513 2040 1 0 573062 species 1738 Thermoanaerobacter sp. X514 1 0 species 399726 Thermoanaerobacter kivui 1621 1 0 species 2325 1004 genus 129957 0 1 species 129958 0 1 1004 Carboxydothermus hydrogenoformans 4 no rank 42857 0 3774 0 44260 genus 2 3 2130 Moorella 1 2127 Moorella thermoacetica 0 1525 species 1 1 8 Ammonifex 1644 2 0 genus 42837 1636 Ammonifex degensii 1 species 42838 0 2 0 140458 genus 1 41 2264 Thermacetogenium 1 0 85874 species 2223 Thermacetogenium phaeum 40 Thermoanaerobacterales Family III. Incertae Sedis 18150 1 0 family 543371 13 28895 genus 0 3 5465 Thermoanaerobacterium 28 1 Thermoanaerobacterium thermosaccharolyticum 3266 0 1517 species 1 2171 Thermoanaerobacterium xylanolyticum 0 species 29329 1 9 genus 44000 0 1 12645 Caldicellulosiruptor 242 1462 Caldicellulosiruptor bescii 1 31899 species 0 Caldicellulosiruptor hydrothermalis 1485 species 413888 0 1 Caldicellulosiruptor kristjanssonii 1684 0 52765 species 1 1 0 species 413889 Caldicellulosiruptor kronotskyensis 1522 species 55205 0 1 1251 Caldicellulosiruptor owensensis 0 species 44001 1 1648 Caldicellulosiruptor saccharolyticus 1 717609 species 0 Caldicellulosiruptor obsidiansis 1846 1 0 52766 species Caldicellulosiruptor lactoaceticus 1505 610 2 227387 family 0 1 610 Thermodesulfobium 1 2 genus 227388 0 0 184064 species 1 609 Thermodesulfobium narugense 1747 Thermoanaerobacterales Family IV. Incertae Sedis 5 1 543372 family 0 3 4 1742 Mahella 1 0 252965 genus 2 1738 Mahella australiensis 1 0 species 252966 3389 3 2770089 order 0 0 2770093 family 2 1084 2 0 genus 291988 1 6 Thermosediminibacter 1084 1 291990 species 0 Thermosediminibacter oceani 1078 family 2770092 0 1 2305 1 499228 genus 0 2305 0 species 499229 1 2305 Tepidanaerobacter acetatoxydans 1 Natranaerobiales 1291 8 4 485256 order 0 1 1283 Natranaerobiaceae 3 3 family 485255 0 genus 375928 0 2 1280 Natranaerobius 46 1 1 375929 species 0 Natranaerobius thermophilus 1234 11 0 53433 order 1 8 7468 Halanaerobiales 4 0 family 53434 1 3 2908 Halobacteroidaceae 2 0 genus 28186 1 1 1409 Acetohalobium 1 species 28187 0 Acetohalobium arabaticum 1408 1 0 genus 42417 1496 1 0 species 42422 1496 Halobacteroides halobius 8 4552 Halanaerobiaceae 1 0 972 family 6 1 Halothermothrix 1136 1 0 32636 genus 2 Halothermothrix orenii 1135 1 species 31909 0 1 61 Halanaerobium 3408 3 0 genus 2330 1856 Halanaerobium hydrogeniformans 1 0 656519 species Halanaerobium praevalens 1491 2331 species 0 1 1 13766128 Clostridiales 33013 164 order 186802 0 1 Lachnospiraceae 9589757 3097 27 family 186803 0 0 572511 genus 3 174 151103 Blautia 1 0 1322 species 1 107887 Blautia hansenii 43042 1 no rank 2648079 0 Blautia sp. YL58 43042 species 1796616 0 1 2569097 genus 0 1 222949 222949 [Eubacterium] hallii species 39488 0 1 0 1663717 genus 2 26 Herbinix 11339 1 Herbinix luporum 11313 1 0 1679721 species 1 Anaerostipes 439998 391 2 genus 207244 0 Anaerostipes hadrus 439607 649756 species 0 1 4 0 1506553 genus 1 634 Lachnoclostridium 147196 47056 no rank 2608895 0 1 Lachnoclostridium sp. YL32 47056 0 species 1834196 1 14360 Lachnoclostridium phytofermentans 0 66219 species 1 1 0 1871021 species 85146 Lachnoclostridium phocaeense 0 2719313 genus 1 88686 208479 species 0 1 88686 [Clostridium] bolteae 0 genus 2719231 1 36339 36339 [Clostridium] saccharolyticum 1 0 84030 species 2039240 genus 0 2 6788 Anaerotignum 18 1 species 28446 0 1 6770 Anaerotignum propionicum 3 0 genus 830 1 91 49072 Butyrivibrio 25276 Butyrivibrio hungatei 185008 species 0 1 Butyrivibrio proteoclasticus 23705 0 43305 species 1 0 841 genus 2 58 566970 Roseburia 1 1 0 301301 species Roseburia hominis 566912 1 7422 Cellulosilyticum 23 2 genus 698776 0 1 0 species 29360 Cellulosilyticum lentocellum 7399 7324042 0 186928 no rank 2 1 0 species 712991 Lachnospiraceae bacterium oral taxon 500 32997 1 39491 species 0 [Eubacterium] rectale 7291045 534756 1 0 28050 genus 1 0 species 39485 534756 [Eubacterium] eligens 3 0 family 216572 1 29 53966 Oscillospiraceae genus 459786 0 2 Oscillibacter 53937 117 1 1 species 351091 0 Oscillibacter valericigenes 53820 177290 Peptostreptococcaceae 931 1 186804 family 0 12 genus 186831 0 2 3093 Acetoanaerobium 10 1 1 0 1511 species 3083 Acetoanaerobium sticklandii 147167 Clostridioides 527 1 1870884 genus 0 2 146640 Clostridioides difficile 0 1496 species 1 Paeniclostridium 4510 8 1 1849828 genus 0 2 Paeniclostridium sordellii 4502 1 species 1505 0 7 5615 Peptoclostridium 1 0 genus 1481960 2 1 species 1731 0 5608 Peptoclostridium acidaminophilum 0 44259 genus 2 13 13429 Filifactor 1 1 0 143361 species Filifactor alocis 13416 2545 0 1411023 no rank 1 Peptostreptococcaceae bacterium oral taxon 929 2545 species 2081703 0 1 10 538999 no rank 0 292260 1 183543 Intestinimonas 1377 2 1392389 genus 0 species 1297617 0 1 182166 Intestinimonas butyriciproducens 0 genus 2717089 1 96486 96486 Mordavella sp. Marseille-P3756 2086584 species 0 1 3 539000 family 0 1 Clostridiales Family XVII. Incertae Sedis 2395 30 2 0 genus 73918 1 12 2365 Thermaerobacter Thermaerobacter marianensis 2353 0 species 73919 1 0 543314 family 4 26 9836 Clostridiales Family XIII. Incertae Sedis 1 [Eubacterium] sulci 4948 143393 species 0 1 0 genus 86331 2 14 Mogibacterium 4862 1 4848 Mogibacterium diversum species 114527 0 1 72676 0 2304686 family 12 1 2304693 genus 0 5042 0 species 84032 1 5042 [Clostridium] thermosuccinogenes 0 genus 2304691 1 3713 1 0 1510 species [Clostridium] stercorarium 3713 0 1637257 genus 2 14 4851 Mageeibacillus 1 0 884684 species 1 Mageeibacillus indolicus 4837 48 2030 Fastidiosipila 1 0 236752 genus 2 1 236753 species 0 1982 Fastidiosipila sanguinis 0 1508657 genus 2 701 Ruminiclostridium 7911 1 7210 [Clostridium] cellulolyticum 0 species 1521 1 0 no rank 2305130 1 35739 Ruminiclostridium sp. KB18 35739 1834198 species 0 1 3 genus 2304692 0 13390 0 288965 species 1 [Clostridium] clariflavum 5320 Ruminiclostridium thermocellum 5291 1 1515 species 0 2779 Herbivorax saccincola 1 0 species 1677857 543349 family 0 3 4573 Symbiobacteriaceae 13 1 1 31 Symbiobacterium 4560 2 0 2733 genus 1 0 species 2734 Symbiobacterium thermophilum 4529 1 Ruminococcaceae 3158134 921 13 541000 family 0 0 253238 genus 2 53 Ethanoligenens 16389 1 16336 Ethanoligenens harbinense 0 253239 species 1 216851 genus 0 2 2948198 Faecalibacterium 1686 1 Faecalibacterium prausnitzii 2946512 1 0 species 853 Flavonifractor 98392 202 1 genus 946234 0 2 1 292800 species 0 98190 Flavonifractor plautii 14050 1 0 no rank 2305133 Ruminococcaceae bacterium CPB6 14050 1 species 1572656 0 42 Herbivorax 1 0 genus 1890281 1 Ruminococcus 72392 336 3 1263 genus 0 species 1264 0 1 Ruminococcus albus 16254 0 1160721 species 1 55802 Ruminococcus bicirculans 1 0 no rank 552397 7750 1 29343 species 0 [Clostridium] cellulosi 7750 1868 2 0 68298 family 1 129001 genus 0 813 Syntrophothermus lipocalidus 813 1 86170 species 0 1 862 genus 0 1055 Syntrophomonas wolfei 1055 1 0 863 species 3 0 family 990719 1 25 Christensenellaceae 56176 2 990721 genus 0 1 56151 Christensenella 1123 0 1805714 species 1 Christensenella massiliensis 55028 36864 Eubacteriaceae 21 1 186806 family 0 5 1520 Eubacterium 34505 1 0 genus 1730 2 Eubacterium limosum 32985 1736 species 0 1 0 33951 genus 2 11 2338 Acetobacterium 1 1 species 33952 0 Acetobacterium woodii 2327 31979 family 0 41 Clostridiaceae 236327 1297 1 4 49082 genus 0 1 4937 Candidatus Arthromitus 96 2638829 no rank 0 3 4841 1546 Candidatus Arthromitus sp. SFB-mouse-NL species 1508644 0 1 Candidatus Arthromitus sp. SFB-mouse 1505 0 49118 species 1 Candidatus Arthromitus sp. SFB-rat-Yit 1790 1 0 1041504 species 3 0 114627 genus 1 10 5616 Alkaliphilus 2619 Alkaliphilus oremlandii species 461876 0 1 0 species 208226 1 Alkaliphilus metalliredigens 2987 1 1981033 genus 0 244 Mordavella 1555 219699 Clostridium 1 0 1485 genus 30 Clostridium aceticum 2814 species 84022 0 1 0 species 46867 1 Clostridium chauvoei 4649 Clostridium botulinum 23522 0 species 1491 1 1 1538 species 0 4496 Clostridium ljungdahlii Clostridium autoethanogenum 4211 species 84023 0 1 3300 Clostridium estertheticum species 238834 0 1 0 1488 species 1 Clostridium acetobutylicum 3538 1493 species 0 1 Clostridium cellulovorans 4868 169679 species 0 1 6091 Clostridium saccharobutylicum 29341 species 0 1 Clostridium argentinense 4723 no rank 2614128 0 2 54391 0 species 1042156 1 48742 Clostridium sp. SY8519 0 755731 species 1 Clostridium sp. BNL1100 5649 1 0 1542 species 3671 Clostridium novyi 7360 Clostridium saccharoperbutylacetonicum 36745 species 0 1 1 1492 species 0 8945 Clostridium butyricum Clostridium tetani 5779 1 species 1513 0 Clostridium carboxidivorans 5265 1 species 217159 0 Clostridium perfringens 7712 0 1502 species 1 0 1519 species 1 Clostridium tyrobutyricum 2979 0 1548 species 1 Clostridium scatologenes 5313 1 0 394958 species Clostridium taeniosporum 4607 Clostridium kluyveri 6812 1 species 1534 0 1 0 species 1520 Clostridium beijerinckii 9777 1 0 species 1509 Clostridium sporogenes 3893 4409 Clostridium cochlearium 1 1494 species 0 Clostridium baratii 7839 0 1561 species 1 species 1501 0 1 Clostridium pasteurianum 10142 1 species 1497 0 Clostridium formicaceticum 2371 1 0 species 1216932 4667 Clostridium bornimense 2 0 390805 genus 1 12 4534 Geosporobacter 0 1424294 species 1 Geosporobacter ferrireducens 4522 1 47421 Peptococcaceae 174 29 family 186807 0 Dehalobacter 7527 79 1 56112 genus 0 4 4919 0 no rank 2635733 2 Dehalobacter sp. DCA 2398 1 1147129 species 0 2521 Dehalobacter sp. CF 1 1131462 species 0 1 0 55583 species Dehalobacter restrictus 2529 0 51196 genus 2 9 2150 Syntrophobotulus 1 species 51197 0 1 2141 Syntrophobotulus glycolicus Desulfitobacterium 10949 63 1 36853 genus 0 5 1863 Desulfitobacterium metallireducens 0 species 142877 1 2413 Desulfitobacterium dichloroeliminans 0 species 233055 1 49338 species 0 1 Desulfitobacterium hafniense 4401 Desulfitobacterium dehalogenans 2209 36854 species 0 1 Desulfotomaculum 8564 104 1 1562 genus 0 5 Desulfotomaculum ferrireducens 2127 1 1833852 species 0 1 species 59610 0 1672 Desulfotomaculum reducens Desulfotomaculum nigrificans 1565 1565 species 0 1 3096 Desulfotomaculum ruminis 1 0 species 1564 2282742 genus 0 1 1806 1806 Desulfotomaculum acetoxidans 1 0 58138 species 2 0 471826 genus 1 7 Candidatus Desulforudis 1290 1283 Candidatus Desulforudis audaxviator 471827 species 0 1 4 0 79206 genus 1 72 Desulfosporosinus 6431 1 0 1563 species Desulfosporosinus orientis 2053 2100 Desulfosporosinus meridiei 1 0 79209 species 0 885581 species 1 Desulfosporosinus acidiphilus 2206 0 genus 51514 2 42 4340 Dehalobacterium 1 4298 Dehalobacterium formicoaceticum 1 51515 species 0 genus 2282740 0 1 2390 species 102134 0 1 Desulfotomaculum gibsoniae 2390 2 278993 genus 0 1 1800 Thermincola 22 0 species 863643 1 Thermincola potens 1778 1 5803 Heliobacteriaceae 15 3 family 31984 0 genus 2697 0 2 5788 Heliobacterium 98 1 5690 Heliobacterium modesticaldum 1 35701 species 0 31 909932 class 0 1 Negativicutes 180103 88 1 101 Acidaminococcales 40309 5 0 1843488 order 4 family 909930 0 1 Acidaminococcaceae 40208 60 0 genus 904 3 134 40148 Acidaminococcus 1 Acidaminococcus fermentans 20312 0 species 905 1 0 species 187327 1 19702 Acidaminococcus intestini 63212 Selenomonadales 117 1 909929 order 0 14 4 0 1843490 family 1 5 Sporomusaceae 4849 genus 365348 0 3 4844 Pelosinus 31 1 1 0 no rank 2629460 2388 1 0 484770 species Pelosinus sp. UFO1 2388 2425 Pelosinus fermentans 1 0 species 365349 9 family 1843491 0 1 58246 Selenomonadaceae 218 1 8 Megamonas 4945 2 0 158846 genus Megamonas hypermegale 4937 1 0 species 158847 243 Selenomonas 53083 1 0 970 genus 6 1 species 69823 0 Selenomonas sputigena 12455 no rank 2637378 0 3 23285 0 species 1884263 1 7120 Selenomonas sp. oral taxon 920 8818 Selenomonas sp. oral taxon 478 1 0 712538 species 7347 Selenomonas sp. oral taxon 136 0 713030 species 1 17100 Selenomonas ruminantium species 971 0 1 1 2332 Veillonellales 76494 11 0 1843489 order 10 31977 family 0 1 74162 Veillonellaceae 2634 1 90 Veillonella 9710 3 0 29465 genus 0 29466 species 1 Veillonella parvula 5046 4574 Veillonella rodentium 248315 species 0 1 0 genus 906 2 410 22858 Megasphaera 1 22448 Megasphaera elsdenii 907 species 0 1 2 0 genus 909928 1 38 Negativicoccus 8046 1702287 species 0 1 8008 Negativicoccus massiliensis 2 0 39948 genus 1 28 Dialister 30914 Dialister pneumosintes 30886 1 species 39950 0 1 Limnochordia 2565 19 5 class 1676648 0 Limnochordales 2546 34 1 1676649 order 0 4 47 Limnochordaceae 2512 1 0 1676650 family 3 genus 1676651 0 2 2465 Limnochorda 17 1 Limnochorda pilosa 2448 1555112 species 0 1 3067 0 no rank 33974 2 0 genus 1930845 2 29 3067 Ndongobacter 1 Ndongobacter massiliensis 3038 1 1871025 species 0 0 no rank 84086 1 1753 1 243899 species 0 1753 endosymbiont 'TC1' of Trimyema compressum 0 class 526524 11 16 64728 Erysipelotrichia 1 1 Erysipelotrichales 64712 41 10 order 526525 0 9 0 family 128827 1 733 Erysipelotrichaceae 64671 1 66 Erysipelothrix 13429 3 0 1647 genus 7164 Erysipelothrix rhusiopathiae 1 1648 species 0 Erysipelothrix larvae 6199 1 1514105 species 0 70 Turicibacter 6162 1 0 genus 191303 2 no rank 2638206 0 1 6092 0 1712675 species 1 Turicibacter sp. H121 6092 1 15424 Faecalibaculum 33 2 1729679 genus 0 1 0 species 1702221 15391 Faecalibaculum rodentium 28923 1 no rank 544447 0 Erysipelotrichaceae bacterium I46 28923 0 species 1834207 1 1 Tenericutes 72222 8 102 phylum 544448 0 2 0 2799557 no rank 2353 1 13 2353 Candidatus Izimaplasma 2 0 1912503 genus no rank 2624196 0 1 2340 2340 Candidatus Izimaplasma sp. HR1 0 species 1541959 1 1 76 Mollicutes 64893 97 0 31969 class order 186329 0 13 Acholeplasmatales 11735 20 1 1 Acholeplasmataceae 11715 55 12 family 2146 0 genus 2147 0 5 Acholeplasma 9112 258 1 Acholeplasma brassicae 1634 0 species 61635 1 1 35623 species 0 2238 Acholeplasma oculi 1 0 2148 species Acholeplasma laidlawii 2149 2833 Acholeplasma palmae 0 species 38986 1 1 124 2548 Candidatus Phytoplasma 6 0 genus 33926 species group 85630 0 1 646 0 species 37692 1 Candidatus Phytoplasma mali 646 1 species group 85632 0 233 0 species 59748 1 233 Candidatus Phytoplasma australiense 1545 3 0 85620 species group 1 229545 species 0 435 Aster yellows witches'-broom phytoplasma 1 0 species 202462 555 Maize bushy stunt phytoplasma Onion yellows phytoplasma 555 1 species 100379 0 0 order 186328 39 43 31334 Entomoplasmatales 1 14 family 33925 0 1 Entomoplasmataceae 9652 25 1 2659 Entomoplasma 29 5 46238 genus 0 214888 species 0 1 428 Entomoplasma luminosum Entomoplasma freundtii 443 0 species 74700 1 215578 species 0 1 Entomoplasma somnilux 931 Entomoplasma melaleucae 828 1 species 81459 0 46239 genus 0 8 6968 Mesoplasma 226 1 Mesoplasma entomophilum 660 species 2149 0 1 1214 Mesoplasma florum 2151 species 0 1 324078 species 0 1 Mesoplasma coleopterae 471 1 0 species 138853 Mesoplasma lactucae 1716 0 225999 species 1 1435 Mesoplasma syrphidae 705 Mesoplasma chauliocola 0 species 216427 1 541 Mesoplasma tabanidae 1 species 219745 0 21639 Spiroplasmataceae 23 1 family 2131 0 24 1 592 Spiroplasma 21616 23 0 genus 2132 944 Spiroplasma chrysopicola 0 species 216933 1 Spiroplasma floricola 921 216937 species 0 1 1114980 species 0 1 Spiroplasma atrichopogonis 796 1 0 2137 species Spiroplasma apis 597 species 216935 0 1 1081 Spiroplasma culicicola 1 0 2136 species 512 Spiroplasma monobiae 1046 Spiroplasma sabaudiense 0 species 216944 1 Spiroplasma taiwanense 1244 1 2145 species 0 1 species 47834 0 1501 Spiroplasma kunkelii species 2139 0 1 731 Spiroplasma clarkii 1 0 species 216934 Spiroplasma corruscae 856 Spiroplasma diminutum 891 0 species 216936 1 0 216942 species 1 Spiroplasma litorale 735 Spiroplasma turonicum 930 216946 species 0 1 1 216938 species 0 Spiroplasma helicoides 980 1 species 2144 0 785 Spiroplasma mirum Spiroplasma citri 903 1 0 species 2133 1 species 362837 0 Spiroplasma cantharicola 756 0 no rank 2637901 2 2842 1 1898044 species 0 1421 Spiroplasma sp. TU-14 1421 Spiroplasma sp. NBRC 100390 1 1914410 species 0 1044 Spiroplasma eriocheiris 1 315358 species 0 Spiroplasma syrphidicola 929 0 species 216945 1 2085 order 0 44 21748 Mycoplasmatales 19 1 21729 Mycoplasmataceae 105 1 2092 family 0 43 7680 0 2767358 genus 12 Mycoplasma pullorum 373 0 48003 species 1 Mycoplasma bovigenitalium 759 species 2112 0 1 1 2109 species 0 Mycoplasma synoviae 344 1 0 species 29555 Mycoplasma canis 604 529 Mycoplasma pulmonis 1 2107 species 0 Mycoplasma californicum 719 1 0 species 2113 1 0 29553 species 563 Mycoplasma bovirhinis 1 0 2115 species Mycoplasma fermentans 979 Mycoplasma bovis 923 1 species 28903 0 2094 species 0 1 Mycoplasma arginini 599 664 Mycoplasma agalactiae 1 2110 species 0 171284 species 0 1 Mycoplasma cynos 624 genus 2129 0 3 1307 Ureaplasma 6 1 621 Ureaplasma parvum 0 species 134821 1 2130 species 0 1 680 Ureaplasma urealyticum 1 Mycoplasma 12637 314 27 2093 genus 0 1 29554 species 0 448 Mycoplasma canadense Mycoplasma genitalium 223 1 species 2097 0 957 Mycoplasma hominis 2098 species 0 1 114 Mycoplasma parvum species 984991 0 1 433 Mycoplasma hyopneumoniae 2099 species 0 1 1 species 51365 0 735 Mycoplasma yeatsii 936 Mycoplasma penetrans 1 species 28227 0 species 2096 0 1 Mycoplasma gallisepticum 563 Mycoplasma putrefaciens 564 2123 species 0 1 Mycoplasma mobile 599 2118 species 0 1 1 species 2104 0 90 Mycoplasma pneumoniae 1 0 57372 species Mycoplasma suis 160 Mycoplasma flocculare 316 1 2128 species 0 1 0 2111 species Mycoplasma arthritidis 294 0 species 86660 1 Mycoplasma dispar 363 1 65123 species 0 136 Mycoplasma wenyonii 3 656088 species group 0 2872 0 species 2105 1 733 Mycoplasma leachii Mycoplasma capricolum 993 1 0 species 2095 Mycoplasma mycoides 1146 1 2102 species 0 1 species 50052 0 752 Mycoplasma crocodyli 1 0 45362 species Mycoplasma bovoculi 328 0 136241 species 1 190 Mycoplasma haemocanis 0 no rank 2683645 1 619 1 1749074 species 0 Mycoplasma sp. (ex Biomphalaria glabrata) 619 89 Mycoplasma haemofelis 0 species 29501 1 1 0 2100 species 480 Mycoplasma hyorhinis 0 171632 species 1 62 Mycoplasma ovis 2 0 no rank 713063 4968 2232 Tenericutes bacterium MZ-XQ 1 species 1911683 0 1 1911684 species 0 Tenericutes bacterium MO-XQ 2736 964 0 phylum 67819 5 Fimbriimonadia 964 2 1 1663419 class 0 5 4 1663425 order 0 1 Fimbriimonadales 962 5 1 7 Fimbriimonadaceae 957 3 0 family 1663426 2 1005038 genus 0 1 Fimbriimonas 950 5 945 Fimbriimonas ginsengisoli 1 0 species 1005039 483 0 no rank 1859062 2 13 483 Thermobaculum 1 0 genus 262406 2 Thermobaculum terrenum 470 166501 species 0 1 78874 clade 1798711 0 154 78874 Cyanobacteria 30 1 1117 phylum 0 154 1161 order 0 33 Nostocales 20236 45 1 1185 family 0 3 1413 Rivulariaceae 27 1 genus 373984 0 2 1386 Rivularia 4 1 1382 0 2676603 no rank 1 1382 Rivularia sp. PCC 7116 0 species 373994 1 1 no rank 1219117 0 581 Nostocales cyanobacterium HT-58-2 581 1 species 1940762 0 11496 Nostocaceae 20 1 1162 family 0 18 1 87 Nostoc 7685 10 0 1177 genus 7 no rank 2593658 0 5574 Nostoc sp. PCC 7524 711 1 28072 species 0 1 0 species 1869241 883 Nostoc sp. CENA543 552 Nostoc sp. PCC 7107 0 species 317936 1 924 Nostoc sp. PCC 7120 1 species 103690 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 718 species 1618022 0 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1120 0 1261031 species 1 0 1751286 species 1 666 Nostoc sp. NIES-3756 species 272131 0 1 930 Nostoc punctiforme species 1306274 0 1 1094 Nostoc flagelliforme 1 4 2434 Anabaena 4 0 genus 1163 2 0 no rank 2619674 1661 1 1647413 species 0 824 Anabaena sp. WA102 837 Anabaena sp. 90 1 46234 species 0 0 1165 species 1 Anabaena cylindrica 769 3 264688 genus 0 1 1357 Trichormus 4 1 0 1164 species Trichormus azollae 688 1 264691 species 0 665 Trichormus variabilis 2 0 family 1892263 1 1 Hapalosiphonaceae 566 565 1 genus 1190 0 1 494603 no rank 0 565 1 0 species 1752063 565 Fischerella sp. NIES-3754 0 family 2661849 8 6135 Calothrix 6135 31 1 genus 1186 0 8 Calothrix parietina 854 0 species 32054 1 5250 0 2619626 no rank 6 816 Calothrix sp. NIES-3974 0 species 2005462 1 Calothrix sp. PCC 7507 709 0 99598 species 1 species 1337936 0 1 Calothrix sp. 336/3 444 1954171 species 0 1 Calothrix sp. NIES-2098 651 2005469 species 0 1 Calothrix sp. NIES-4071 1656 974 Calothrix sp. NIES-4101 0 2005461 species 1 508 0 1983111 no rank 1 718217 species 0 1 508 cyanobacterium endosymbiont of Epithemia turgida 0 order 1890424 57 309 34134 Synechococcales 1 1066 0 2303730 family 2 1 8 1066 Halomicronema 2 0 170610 genus 1209493 species 0 1 Halomicronema hongdechloris 1058 4496 Prochloraceae 6 1 family 1213 0 5 4 1218 genus 0 1 4490 Prochlorococcus 4 2 0 2627481 no rank 833 species 1501269 0 1 Prochlorococcus sp. MIT 0801 455 1 species 1501268 0 378 Prochlorococcus sp. MIT 0604 species 1219 0 1 3653 Prochlorococcus marinus 0 family 1890429 1 715 715 0 155977 genus 1 Acaryochloris marina 715 0 species 155978 1 3 0 1890436 family 1 9 489 Pseudanabaenaceae 1152 genus 0 2 480 Pseudanabaena 2 1 0 no rank 2593292 1 478 1 0 82654 species 478 Pseudanabaena sp. PCC 7367 6 0 1890438 family 1 10 3154 Leptolyngbyaceae 5 47251 genus 0 1 Leptolyngbya 3144 12 2507 3 2650499 no rank 0 1 0 111781 species 555 Leptolyngbya sp. PCC 7376 1752064 species 0 1 654 Leptolyngbya sp. NIES-3755 1 0 1080068 species 1298 Leptolyngbya sp. O-77 1184 species 0 1 625 Leptolyngbya boryana 1890428 family 0 5 1679 Merismopediaceae 1 1 1 15 Synechocystis 1678 4 0 genus 1142 2640012 no rank 0 3 1663 0 species 2116702 1 Synechocystis sp. IPPAS B-1465 553 553 Synechocystis sp. PCC 6803 1 1148 species 0 1 0 1147 species Synechocystis sp. PCC 6714 557 family 1890426 0 34 Synechococcaceae 22226 100 1 Dactylococcopsis 368 5 1 genus 13034 0 2 0 292566 species 1 Dactylococcopsis salina 363 4147 Cyanobium 54 1 167375 genus 0 3 1969 Cyanobium gracile 1 0 species 59930 2124 1 2627006 no rank 0 species 1851505 0 1 Cyanobium sp. NIES-981 2124 genus 146785 0 2 442 Thermosynechococcus 1 1 441 Thermosynechococcus elongatus 1 species 146786 0 231 17169 Synechococcus 1 0 genus 1129 26 species 32046 0 1 Synechococcus elongatus 760 1 species 33070 0 505 Synechococcus lividus 23 2626047 no rank 0 15673 species 32051 0 1 Synechococcus sp. WH 7803 715 Synechococcus sp. PCC 7502 415 1 species 1173263 0 404 Synechococcus sp. PCC 73109 374982 species 0 1 321327 species 0 1 1218 Synechococcus sp. JA-3-3Ab 767 Synechococcus sp. CC9605 1 110662 species 0 807 Synechococcus sp. JA-2-3B'a(2-13) 1 species 321332 0 0 species 1280380 1 Synechococcus sp. KORDI-100 880 Synechococcus sp. KORDI-49 1129 1 species 585423 0 Synechococcus sp. PCC 7002 405 1 0 species 32049 1 0 316278 species 939 Synechococcus sp. RCC307 1 0 species 585425 Synechococcus sp. KORDI-52 656 Synechococcus sp. PCC 8807 322 species 195248 0 1 Synechococcus sp. PCC 6312 326 1 species 195253 0 1 species 374981 0 Synechococcus sp. PCC 7003 524 774 Synechococcus sp. SynAce01 0 1916956 species 1 1 0 species 84588 Synechococcus sp. WH 8102 1243 1 species 1350461 0 757 Synechococcus sp. UTEX 2973 0 29410 species 1 1253 Synechococcus sp. WH 8103 390 Synechococcus sp. CC9902 0 316279 species 1 1 0 species 1827144 Synechococcus sp. NIES-970 474 Synechococcus sp. PCC 7117 333 species 195498 0 1 Synechococcus sp. CC9311 434 1 0 species 64471 Synechococcus sp. WH 8109 508 1 166314 species 0 18 2852 Gloeobacteria 1 0 307596 class 6 1 57 2834 Gloeobacterales 5 0 307595 order 39 2777 Gloeobacteraceae 1 0 family 1890422 4 65 Gloeobacter 2738 1 0 genus 33071 3 1177 Gloeobacter kilaueensis 1 0 species 1416614 1496 Gloeobacter violaceus 0 33072 species 1 44 0 subclass 1301283 17930 79 10756 Chroococcales 1 0 order 1118 24 4 1890449 family 0 1 Microcystaceae 1545 4 1125 genus 0 3 1541 Microcystis 17 1 Microcystis aeruginosa 988 0 1126 species 1 536 2643300 no rank 0 1 536 Microcystis sp. MC19 1967666 species 0 1 3167 Chroococcaceae 12 1 family 1890464 0 8 1919 Geminocystis 1 1 genus 669357 0 3 1918 2 2625037 no rank 0 0 species 1615909 1 Geminocystis sp. NIES-3708 998 Geminocystis sp. NIES-3709 920 0 1617448 species 1 2 genus 102231 0 1 587 Gloeocapsa 5 1 0 no rank 2623012 582 582 Gloeocapsa sp. PCC 7428 0 1173026 species 1 1 3 Chondrocystis 649 2 0 genus 268175 no rank 2648896 0 1 646 0 species 2005460 1 646 Chondrocystis sp. NIES-4102 1 Aphanothecaceae 4925 1 0 1890450 family 9 2 0 92682 no rank 410 1 Halothece 410 8 2 76023 genus 0 no rank 2632878 0 1 402 Halothece sp. PCC 7418 402 1 65093 species 0 1 0 1453359 genus 556 556 Candidatus Atelocyanobacterium thalassa 0 713887 species 1 1822 0 genus 2546365 2 1822 0 species 2546366 2 1130 Cyanothece sp. PCC 8801 0 strain 41431 1 1 strain 395962 0 Cyanothece sp. PCC 8802 692 28070 genus 0 2 1472 0 species 2546356 1 665 665 Cyanothece sp. PCC 7424 1 strain 65393 0 807 1 species 2546359 0 497965 strain 0 1 Cyanothece sp. PCC 7822 807 1 genus 263510 0 664 664 0 species 2546360 1 664 Cyanothece sp. ATCC 51142 0 43989 strain 1 1040 Cyanobacteriaceae 1 1 family 1890452 0 2 1039 1 0 genus 102234 Cyanobacterium aponinum 1039 1 379064 species 0 1150 order 0 20 7174 Oscillatoriales 42 1 6 Gomontiellaceae 754 1 0 family 1892255 2 748 0 genus 241421 1 748 Crinalium epipsammum species 241425 0 1 1688 Microcoleaceae 1 1 family 1892252 0 5 1205 genus 0 2 Trichodesmium 710 3 1 Trichodesmium erythraeum 707 1 0 1206 species 0 44471 genus 2 1 977 Microcoleus 1 1 2642155 no rank 0 976 0 species 1173027 1 Microcoleus sp. PCC 7113 976 3 0 1892251 family 1 12 Coleofasciculaceae 1405 0 63132 genus 2 2 1393 Geitlerinema 1 1391 1 0 2648775 no rank Geitlerinema sp. PCC 7407 1391 species 1173025 0 1 6 0 family 1892254 1 6 Oscillatoriaceae 2601 genus 1155738 0 2 928 Moorea 5 1 923 Moorea producens 1155739 species 0 1 1 6 Oscillatoria 1667 3 0 genus 1158 0 species 118323 1 Oscillatoria acuminata 702 959 Oscillatoria nigro-viridis 1 0 482564 species Cyanothecaceae 684 31 1 family 1892249 0 3 0 genus 43988 2 36 653 Cyanothece 1 617 no rank 2649277 0 1 Cyanothece sp. PCC 7425 617 1 0 395961 species order 52604 0 8 2452 Pleurocapsales 4 1 1 736 Hyellaceae 60 3 1890500 family 0 Pleurocapsa 676 7 1 genus 44474 0 2 54308 species 0 1 Pleurocapsa minor 669 1 17 1712 Dermocarpellaceae 4 0 1890498 family 0 genus 102115 3 5 1695 Stanieria 1 1 species 102116 0 Stanieria cyanosphaera 848 842 0 2642663 no rank 1 1 0 species 1807358 842 Stanieria sp. NIES-3757 order 1890505 0 4 732 Chroococcidiopsidales 3 1 3 family 1890528 0 1 729 Chroococcidiopsidaceae 1 1 2 728 Chroococcidiopsis 2 0 54298 genus 726 Chroococcidiopsis thermalis 0 54299 species 1 2 2138240 phylum 0 563 2 0 2138243 class 1 2 563 Coprothermobacteria 0 order 2138246 1 561 1 0 family 2138247 561 1 genus 68335 0 561 Coprothermobacter proteolyticus 561 35786 species 0 1 1422 5 0 68297 phylum 5 203486 class 0 1 1422 Dictyoglomia 1 4 0 order 203487 1 15 Dictyoglomales 1421 1406 3 family 203488 0 2 1406 Dictyoglomus 1 0 13 genus 3 513050 species 0 1 616 Dictyoglomus turgidum species 14 0 1 788 Dictyoglomus thermophilum 47211 24 0 32066 phylum 0 class 203490 24 24 47211 Fusobacteriia 1 23 0 203491 order 1 44 Fusobacteriales 47187 11 0 1129771 family 1 30 12236 Leptotrichiaceae 2 0 32068 genus 1 1 2052 Sebaldella 826 species 0 1 2051 Sebaldella termitidis 1680 1 0 genus 34104 0 species 34105 1 Streptobacillus moniliformis 1680 genus 168808 0 2 Sneathia 1603 3 1 1600 Sneathia amnii 1 0 species 187101 32067 genus 0 5 Leptotrichia 6871 8 1 Leptotrichia buccalis 1586 0 40542 species 1 5277 3 0 no rank 2633022 1 1785996 species 0 Leptotrichia sp. oral taxon 847 1620 1772 Leptotrichia sp. oral taxon 498 1 0 712368 species 0 712357 species 1 Leptotrichia sp. oral taxon 212 1885 1 34907 Fusobacteriaceae 58 11 203492 family 0 0 genus 848 9 105 Fusobacterium 33340 1 4812 Fusobacterium varium 1 0 species 856 10107 Fusobacterium nucleatum 1 851 species 0 859 species 0 1 Fusobacterium necrophorum 1320 Fusobacterium periodonticum 6456 species 860 0 1 3132 Fusobacterium hwasookii 0 1583098 species 1 Fusobacterium ulcerans 3549 species 861 0 1 1 species 850 0 Fusobacterium mortiferum 2201 species 849 0 1 1658 Fusobacterium gonidiaformans 1509 1 0 167639 genus 1509 Ilyobacter polytropus 167642 species 0 1 3 0 2323 no rank 906 906 3 1783234 clade 0 659 2 0 95901 clade 2 class 2497643 0 659 2 0 order 2497644 659 0 2497645 family 2 659 1551504 genus 0 2 Candidatus Babela 659 139 1 1 673862 species 0 520 Candidatus Babela massiliensis 1 95818 phylum 0 247 247 0 no rank 1895827 1 1 0 2056494 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 247 42 phylum 200918 0 17539 class 188708 0 42 Thermotogae 17539 43 1 21 11549 Thermotogales 1 0 order 2419 28 0 family 1643950 10 21 4823 Fervidobacteriaceae 1 Fervidobacterium 1850 7 1 genus 2422 0 4 0 2424 species 1 Fervidobacterium nodosum 385 1 2423 species 0 606 Fervidobacterium islandicum 852 Fervidobacterium pennivorans 93466 species 0 1 1 3 Thermosipho 2952 5 0 genus 2420 0 species 2421 1 949 Thermosipho africanus 0 no rank 2676525 2 1251 1 0 1437364 species 628 Thermosipho sp. 1070 623 Thermosipho sp. 1063 1 species 1462747 0 749 Thermosipho melanesiensis 1 0 46541 species Thermotogaceae 6705 19 1 family 188709 0 17 96 Thermotoga 4796 1 0 2335 genus 11 2336 species 0 1 463 Thermotoga maritima 93929 species 0 1 Thermotoga petrophila 448 Thermotoga naphthophila 423 1 species 93930 0 618 Thermotoga neapolitana 1 0 2337 species 0 species 1508419 1 Thermotoga caldifontis 301 563 Thermotoga profunda 0 species 1508420 1 4 0 no rank 2631113 1884 Thermotoga sp. RQ2 424 1 126740 species 0 0 1157947 species 1 384 Thermotoga sp. Cell2 0 126738 species 1 608 Thermotoga sp. RQ7 1157948 species 0 1 468 Thermotoga sp. 2812B 5 0 genus 1643951 1 53 1890 Pseudothermotoga 1 0 119394 species Pseudothermotoga thermarum 458 449 Pseudothermotoga hypogea 1 0 57487 species 453 Pseudothermotoga lettingae 177758 species 0 1 species 38322 0 1 477 Pseudothermotoga elfii 8 0 1643947 order 1 6 4115 Petrotogales 7 0 1643949 family 4109 genus 28236 0 2 718 Petrotoga 9 1 Petrotoga mobilis 709 1 0 69499 species 1 2503 Marinitoga 17 3 160798 genus 0 1237 1 2640159 no rank 0 1 0 1545835 species Marinitoga sp. 1137 1237 Marinitoga piezophila 1249 1 species 149715 0 0 genus 1511648 2 1 Defluviitoga 888 1 0 1006576 species 1 887 Defluviitoga tunisiensis 5 1832 Kosmotogales 1 0 order 1643946 5 7 1827 Kosmotogaceae 1 0 family 1643948 4 1124 2 0 651456 genus 581 Kosmotoga pacifica 1 0 1330330 species 543 Kosmotoga olearia species 651457 0 1 696 1184396 genus 0 1 Mesotoga prima 696 1 1184387 species 0 465 4 0 clade 2498710 phylum 67814 0 4 465 3 465 Caldisericia 1 0 class 693071 4 8 462 Caldisericales 1 0 693072 order 3 454 2 0 693073 family 2 0 genus 693074 1 1 454 Caldisericum 1 693075 species 0 Caldisericum exile 453 Proteobacteria 1966363 1188 1 1224 phylum 0 2024 6 0 1807140 class 2687 1 2687 Acidithiobacillales 89 6 order 225057 0 1 28 Acidithiobacillaceae 2598 5 0 225058 family 1 2570 Acidithiobacillus 20 4 119977 genus 0 743 Acidithiobacillus ferrooxidans 1 920 species 0 1 33059 species 0 973 Acidithiobacillus caldus 160808 species 0 1 834 Acidithiobacillus ferrivorans 5 0 580370 class 2026 580371 order 0 5 Mariprofundales 2026 46 1 1 1 1980 Mariprofundaceae 4 0 family 580372 4 1979 Mariprofundus 1 0 377315 genus 3 733 Mariprofundus ferrinatatus 0 species 1921087 1 1 1921086 species 0 Mariprofundus aestuarium 1242 201 0 subphylum 68525 248756 0 class 29547 71 308 83646 Epsilonproteobacteria 1 order 213849 0 66 81791 Campylobacterales 3588 1 0 72294 family 41 6632 66756 Campylobacteraceae 1 1 50151 Campylobacter 808 26 genus 194 0 1 species 197 0 8242 Campylobacter jejuni 1 0 species 201 Campylobacter lari 5471 0 species 196 1 1197 Campylobacter fetus 1 1965231 species 0 Campylobacter pinnipediorum 1043 Campylobacter concisus 875 1 0 199 species Campylobacter sputorum 1251 1 species 206 0 Campylobacter cuniculorum 340 0 species 374106 1 1 0 species 497724 639 Campylobacter subantarcticus species 827 0 1 695 Campylobacter ureolyticus Campylobacter hyointestinalis 707 0 198 species 1 260714 species 0 1 Campylobacter insulaenigrae 453 590 Campylobacter gracilis 0 824 species 1 506 Campylobacter iguaniorum 1244531 species 0 1 Campylobacter coli 19355 1 0 195 species species 1031542 0 1 Campylobacter volucris 477 1108 Campylobacter hominis 0 76517 species 1 Campylobacter curvus 568 0 200 species 1 species 75658 0 1 Campylobacter lanienae 2395 0 species 522485 1 Campylobacter avium 394 474 Campylobacter helveticus 1 28898 species 0 0 2593542 no rank 4 1855 species 1660073 0 1 563 Campylobacter sp. RM6137 0 1660076 species 1 Campylobacter sp. RM12175 458 Campylobacter sp. RM8964 364 1 1660074 species 0 1 0 species 1500960 470 Campylobacter sp. RM16704 488546 species 0 1 708 Campylobacter peloridis 5599 0 2321108 no rank 5 genus 2321187 0 1 1192 0 species 1850254 1 1192 Arcobacter sp. LPB0137 1344 1 0 2321207 no rank Arcobacter sp. L 1344 1 0 species 944547 26 Arcobacter 3063 1 0 genus 28196 3 28199 species 0 1 1125 Arcobacter nitrofigilis Arcobacter butzleri 1912 species 28197 0 1 1 41 4374 Sulfurospirillum 9 0 57665 genus 514 Sulfurospirillum multivorans 66821 species 0 1 1 species 194424 0 Sulfurospirillum halorespirans 439 444 Sulfurospirillum cavolei species 366522 0 1 1989 3 2618290 no rank 0 Sulfurospirillum sp. JPD-1 739 1 220622 species 0 1 species 1986224 0 709 Sulfurospirillum sp. SL2-1 Sulfurospirillum sp. UCH001 541 0 1581011 species 1 516 Sulfurospirillum deleyianum 1 0 species 65553 431 Sulfurospirillum barnesii 1 0 species 44674 2851 5 2771472 family 0 2 0 genus 269260 1 1 1070 Nitratifractor Nitratifractor salsuginis 1069 1 269261 species 0 genus 265570 0 3 1781 Sulfurovum 15 1 1 206403 species 0 Sulfurovum lithotrophicum 879 0 no rank 2646778 1 887 species 387093 0 1 887 Sulfurovum sp. NBC37-1 0 family 72293 15 16 Helicobacteraceae 6720 1 5942 Helicobacter 27 1 209 genus 0 12 0 2593540 no rank 1 435 435 Helicobacter sp. MIT 01-6242 222136 species 0 1 Helicobacter felis 149 1 0 species 214 1923 Helicobacter pylori 1 0 210 species 283 Helicobacter typhlonius 1 76936 species 0 species 32025 0 1 276 Helicobacter hepaticus Helicobacter cetorum 828 0 138563 species 1 920 Helicobacter cinaedi 1 species 213 0 1 species 1591088 0 Helicobacter himalayensis 202 1 species 37372 0 528 Helicobacter bilis 217 species 0 1 Helicobacter mustelae 280 1 species 212 0 Helicobacter acinonychis 91 0 genus 843 2 4 Wolinella 762 1 1 species 844 0 Wolinella succinogenes 758 1876 4 2771471 family 0 348 0 genus 286130 1 0 148813 species 1 Sulfuricurvum kujiense 348 1 Sulfurimonas 1528 5 3 genus 202746 0 Sulfurimonas denitrificans 746 0 39766 species 1 777 Sulfurimonas autotrophica 0 202747 species 1 1547 4 0 order 235899 1 1051 Nautiliaceae 1 0 family 224467 3 1 3 1050 Nautilia 2 0 191291 genus 1047 Nautilia profundicola 1 244787 species 0 1 0 family 2795691 496 496 1 0 genus 269258 0 no rank 2624044 1 496 Nitratiruptor sp. SB155-2 496 0 species 387092 1 130 0 class 28221 1 459 Deltaproteobacteria 165110 1 Myxococcales 59498 837 38 29 order 0 11906 8 0 80812 suborder 5 0 family 49 1 77 9306 Polyangiaceae genus 50 0 2 Chondromyces 2253 5 1 2248 Chondromyces crocatus 52 species 0 1 Sorangium 6976 42 1 39643 genus 0 2 6934 Sorangium cellulosum 1 species 56 0 3 family 1055686 0 1 2600 Sandaracinaceae 21 2579 Sandaracinus 22 1 genus 1055688 0 2 2557 Sandaracinus amylolyticus 1 0 species 927083 suborder 224462 0 3 2954 2954 Kofleriaceae 34 1 224464 family 0 3 162027 genus 0 2 2920 Haliangium 29 1 1 0 80816 species 2891 Haliangium ochraceum 43801 26 0 suborder 80811 26 Vulgatibacteraceae 1802 1 0 1524213 family 3 2 0 genus 1524214 1 59 1776 Vulgatibacter Vulgatibacter incomptus 1717 species 1391653 0 1 9 0 39 family 1 307 11964 Archangiaceae 1 16 2226 Stigmatella 2 0 genus 40 2210 Stigmatella aurantiaca 0 species 41 1 33 3646 Archangium 1 0 47 genus 2 0 48 species 1 3613 Archangium gephyra 1 2949 Cystobacter 11 2 genus 42 0 1 0 species 43 2938 Cystobacter fuscus 2 0 genus 44 1 22 2836 Melittangium 2814 Melittangium boletus 0 species 83453 1 0 1524215 family 5 116 Anaeromyxobacteraceae 9290 1 0 genus 161492 4 160 Anaeromyxobacter 9174 1 species 161493 0 1 4029 Anaeromyxobacter dehalogenans 2 no rank 2620896 0 4985 Anaeromyxobacter sp. K 2456 1 0 species 447217 Anaeromyxobacter sp. Fw109-5 2529 0 404589 species 1 1 150 20745 Myxococcaceae 9 0 family 31 1 Myxococcus 14092 501 5 32 genus 0 2822 Myxococcus hansupus species 1297742 0 1 1 83455 species 0 2512 Myxococcus stipitatus 1 0 34 species 2689 Myxococcus xanthus 1 0 species 33 Myxococcus fulvus 5568 83461 genus 0 3 Corallococcus 6503 132 1 2945 Myxococcus macrosporus 1 0 35 species species 184914 0 1 Corallococcus coralloides 3426 0 order 213118 20 193 14081 Desulfobacterales 1 37 Desulfobacteraceae 7297 1 0 family 213119 10 0 genus 28222 2 1 Desulfobacula 942 1 0 28223 species 1 941 Desulfobacula toluolica 3 896 genus 0 1 Desulfococcus 3566 15 species 181663 0 1 1956 Desulfococcus oleovorans 1 0 species 897 Desulfococcus multivorans 1595 Desulfobacterium 1084 4 1 genus 2295 0 2 Desulfobacterium autotrophicum 1080 species 2296 0 1 genus 218207 0 2 1668 Desulfatibacillum 8 1 1 species 259354 0 Desulfatibacillum alkenivorans 1660 0 family 213121 9 67 Desulfobulbaceae 6591 1 1 67 2058 Desulfurivibrio 2 0 427922 genus 1 0 427923 species 1991 Desulfurivibrio alkaliphilus 109168 genus 0 2 902 Desulfotalea 13 1 0 species 84980 1 Desulfotalea psychrophila 889 0 genus 893 2 13 2815 Desulfobulbus 1 1 0 1986146 species 2802 Desulfobulbus sp. ORNL genus 53318 0 2 Desulfocapsa 749 7 1 Desulfocapsa sulfexigens 742 1 0 species 65555 53 Syntrophobacterales 4057 1 0 213462 order 11 0 213468 family 7 13 Syntrophaceae 2620 1 2 genus 43773 0 1 Syntrophus 965 8 957 Syntrophus aciditrophicus species 316277 0 1 2 Desulfobacca 843 1 0 genus 60892 2 1 species 60893 0 Desulfobacca acetoxidans 841 2 genus 2357 0 1 Desulfomonile 799 1 Desulfomonile tiedjei 798 1 2358 species 0 1 Syntrophobacteraceae 1384 20 3 family 213465 0 8 1364 Syntrophobacter 1 0 genus 29526 2 0 119484 species 1 Syntrophobacter fumaroxidans 1356 4 453227 order 0 1 2646 Desulfarculales 20 1 Desulfarculaceae 2626 48 3 453228 family 0 2 453229 genus 0 1 2578 Desulfarculus 13 0 species 453230 1 2565 Desulfarculus baarsii 35402 Desulfuromonadales 560 1 order 69541 0 24 23388 Geobacteraceae 188 1 family 213422 0 14 11 28231 genus 0 1 Geobacter 21693 324 1 313985 species 0 2051 Geobacter lovleyi 0 28232 species 1 Geobacter metallireducens 1920 1 1340425 species 0 2256 Geobacter anodireducens 1967 Geobacter uraniireducens species 351604 0 1 Geobacter pickeringii 1802 1 345632 species 0 1 35554 species 0 Geobacter sulfurreducens 1845 5603 2 no rank 2627627 0 Geobacter sp. M21 2673 443144 species 0 1 2930 Geobacter sp. M18 1 443143 species 0 1 species 225194 0 2416 Geobacter bemidjiensis 1 0 1203471 species 1509 Geobacter daltonii 1 2 Geoalkalibacter 1507 2 0 genus 392332 1 0 species 483547 Geoalkalibacter subterraneus 1505 Desulfuromonadaceae 11454 133 1 family 213421 0 9 0 genus 890 3 65 4077 Desulfuromonas 1 1 species 1603606 0 1989 Desulfuromonas soudanensis 2023 0 2614637 no rank 1 Desulfuromonas sp. DDH964 2023 species 1823759 0 1 5 0 genus 18 1 125 Pelobacter 7244 1 no rank 2620299 0 1284 1842532 species 0 1 Pelobacter sp. SFB93 1284 1 0 29543 species 2837 Pelobacter propionicus Pelobacter carbinolicus 1578 0 species 19 1 1420 Pelobacter acetylenicus 29542 species 0 1 0 213115 order 26 592 47464 Desulfovibrionales 1 family 213116 0 4 4341 Desulfomicrobiaceae 63 1 24 4278 Desulfomicrobium 1 0 genus 898 3 1 species 899 0 2237 Desulfomicrobium baculatum Desulfomicrobium orale 2017 0 132132 species 1 305 41658 Desulfovibrionaceae 1 0 194924 family 18 1 0 2582840 genus 2002 2002 Desulfovibrio africanus 1 0 species 873 0 genus 2035811 4 64 Pseudodesulfovibrio 7401 1 1 0 species 182210 2307 Pseudodesulfovibrio aespoeensis 1 species 57320 0 Pseudodesulfovibrio profundus 1615 3415 Pseudodesulfovibrio indicus 0 species 1716143 1 0 41707 genus 2 1 790 Lawsonia 1 29546 species 0 1 789 Lawsonia intracellularis Desulfovibrio 29575 367 1 872 genus 0 9 1 species 881 0 6587 Desulfovibrio vulgaris 2344 2593640 no rank 0 1 2344 Desulfovibrio sp. G11 1 631220 species 0 1 species 184917 0 Desulfovibrio magneticus 3108 Candidatus Desulfovibrio trichonymphae 638 0 species 1725232 1 1 0 species 901 Desulfovibrio piger 5059 species 876 0 1 5843 Desulfovibrio desulfuricans 0 species 44742 1 Desulfovibrio fairfieldensis 3493 1 0 58180 species 2136 Desulfovibrio alaskensis 1585 0 genus 2794998 1 1 0 species 880 1585 Desulfovibrio salexigens 873 Desulfohalobiaceae 5 1 213117 family 0 3 2 genus 45662 0 1 868 Desulfohalobium 2 0 45663 species 1 866 Desulfohalobium retbaense 1503 Desulfurellales 3 1 213113 order 0 6 5 117942 family 0 1 1500 Desulfurellaceae 9 2 0 33001 genus 1 20 788 Desulfurella species 33002 0 1 768 Desulfurella acetivorans 1 703 Hippea 19 2 genus 84404 0 684 Hippea maritima 0 84405 species 1 1 1065 Betaproteobacteria 404745 351 0 class 28216 43 0 32003 order 1 119 18353 Nitrosomonadales 13 family 32011 0 1 Methylophilaceae 4543 34 3 0 genus 359407 1 2 1063 Methylotenera 0 species 359408 1 361 Methylotenera mobilis Methylotenera versatilis 700 species 1055487 0 1 0 genus 81682 3 18 Methylovorus 1659 1 887 Methylovorus glucosotrophus species 266009 0 1 no rank 2634027 0 1 754 Methylovorus sp. MP688 754 1 0 species 887061 1 2 784 Candidatus Methylopumilus 3 0 1679002 genus 1581680 species 0 1 316 Candidatus Methylopumilus turicensis Candidatus Methylopumilus planktonicus 466 1 1581557 species 0 genus 404 0 2 Methylobacillus 516 16 1 500 Methylobacillus flagellatus 1 405 species 0 487 0 16 genus 1 no rank 2630143 0 1 487 Methylophilus sp. TWE2 487 1 species 1662285 0 family 90627 0 5 2000 Gallionellaceae 86 1 0 genus 314343 2 16 Sideroxydans 1344 1 1 0 63745 species 1328 Sideroxydans lithotrophicus 1 6 Gallionella 570 2 0 genus 96 1 370405 species 0 564 Gallionella capsiferriformans 1 Thiobacillaceae 1043 19 3 2008790 family 0 14 1024 Thiobacillus 1 0 genus 919 2 1010 Thiobacillus denitrificans 1 species 36861 0 12 family 206379 0 1 Nitrosomonadaceae 5536 25 74 3732 Nitrosomonas 1 0 914 genus 7 1 44577 species 0 Nitrosomonas ureae 599 2 2609265 no rank 0 1195 0 species 153948 1 575 Nitrosomonas sp. AL212 0 species 261292 1 620 Nitrosomonas sp. Is79A3 Nitrosomonas communis 767 1 0 44574 species 0 species 915 1 Nitrosomonas europaea 623 1 0 916 species 474 Nitrosomonas eutropha 1 15 1779 Nitrosospira 4 0 35798 genus 414 Nitrosospira multiformis species 1231 0 1 687 Nitrosospira lacus 1 0 species 1288494 1 35799 species 0 663 Nitrosospira briensis 4 2772226 family 0 1948 0 genus 1778653 2 11 Sulfuriferula 1011 1 1 2637784 no rank 0 1000 Sulfuriferula sp. AH1 1000 1 0 1985873 species 2 genus 935200 0 1 937 Sulfuricella 20 1 0 649841 species 917 Sulfuricella denitrificans Sterolibacteriaceae 3164 92 1 2008793 family 0 5 49 Sulfuritalea 1602 1 0 1054211 genus 2 0 species 748811 1 Sulfuritalea hydrogenivorans 1553 1 23 Methyloversatilis 1470 2 0 genus 378210 1447 2639971 no rank 0 1 1 species 1842540 0 1447 Methyloversatilis sp. RAC08 Neisseriales 34409 557 1 206351 order 0 37 1 182 17921 Neisseriaceae 23 0 481 family 1193515 genus 0 2 806 Snodgrassella 5 1 801 Snodgrassella alvi 1 0 species 1196083 1 1 Simonsiella 362 2 0 71 genus 361 Simonsiella muelleri 1 0 species 72 1241 Eikenella 10 1 genus 538 0 2 species 539 0 1 Eikenella corrodens 1231 0 59 genus 3 26 1613 Vitreoscilla 1 no rank 2627922 0 1 384 Vitreoscilla sp. C1 384 0 96942 species 1 Vitreoscilla filiformis 1203 species 63 0 1 904 1 0 421605 no rank 2052837 species 0 1 904 Neisseriaceae bacterium DSM 100970 0 genus 482 12 221 12813 Neisseria 1 0 485 species 1 Neisseria gonorrhoeae 971 1 0 1853278 species 1202 Neisseria sp. 10023 0 species 488 1 929 Neisseria mucosa 0 2623750 no rank 2 2136 1 species 655307 0 1330 Neisseria sp. KEM232 806 Neisseria sp. 10022 1 0 1853276 species 1422 Neisseria lactamica 1 0 species 486 1 487 species 0 Neisseria meningitidis 2525 Neisseria zoodegmatis 795 0 species 326523 1 0 species 490 1 820 Neisseria sicca 1 0 28091 species 872 Neisseria weaveri Neisseria elongata 920 1 species 495 0 1 Chromobacteriaceae 15931 300 13 family 1499392 0 2 187 genus 0 1 Aquaspirillum 1649 10 0 no rank 2620219 1 1639 1938604 species 0 1 Aquaspirillum sp. LM1 1639 1 Jeongeupia 2099 38 2 885864 genus 0 0 no rank 2619593 1 2061 Jeongeupia sp. USM3 2061 1906741 species 0 1 0 568394 genus 2 38 Pseudogulbenkiania 2006 1 1968 1 0 no rank 2642558 Pseudogulbenkiania sp. NH8B 1968 0 species 748280 1 7539 0 90153 no rank 4 1 7539 Chromobacterium 319 4 535 genus 0 1108595 species 0 1 2922 Chromobacterium vaccinii 1 2641838 no rank 0 1955 1 species 2059672 0 1955 Chromobacterium sp. ATCC 53434 2343 Chromobacterium violaceum species 536 0 1 1 Laribacter 2338 30 2 168470 genus 0 168471 species 0 1 2308 Laribacter hongkongensis 80840 order 0 235 323271 Burkholderiales 3814 1 74491 Comamonadaceae 1264 1 80864 family 0 59 1509 Verminephrobacter 12 1 genus 364316 0 2 species 364317 0 1 Verminephrobacter eiseniae 1497 1729 genus 2678886 0 1 2116657 species 0 1 Melaminivora sp. SC2-7 1729 5 0 28065 genus 1 110 5709 Rhodoferax 1690 Rhodoferax koreense 1 species 1842727 0 1322 Rhodoferax saidenbachensis 1 0 species 1484693 1531 Rhodoferax ferrireducens 192843 species 0 1 1 0 81479 species Rhodoferax antarcticus 1056 1 18 2492 Alicycliphilus 2 0 genus 201096 Alicycliphilus denitrificans 2474 179636 species 0 1 1 537 12528 Acidovorax 9 0 genus 12916 1 0 553814 species 1059 Acidovorax sp. NA3 5827 4 0 no rank 2684926 1501 Acidovorax sp. KKS102 0 species 358220 1 1 232721 species 0 Acidovorax sp. JS42 1611 Acidovorax sp. RAC01 1421 1842533 species 0 1 1 0 species 1858609 1294 Acidovorax sp. T1 1990 Acidovorax avenae 1 species 80867 0 1 species 721785 0 1495 Acidovorax ebreus Acidovorax citrulli 1620 1 species 80869 0 352450 genus 0 2 Simplicispira 1341 17 1 Simplicispira sp. SC1-8 1324 species 2109915 0 1 76 1589 Melaminivora 1 0 genus 1649468 2 1 no rank 2641902 0 1513 1 0 species 2109913 Melaminivora sp. SC2-9 1513 9804 Delftia 432 1 genus 80865 0 5 Delftia tsuruhatensis 2310 0 180282 species 1 0 species 80866 1 Delftia acidovorans 2484 4578 2 0 2613839 no rank 0 species 1920191 1 2196 Delftia sp. HK171 0 species 742013 1 2382 Delftia sp. Cs1-4 1 6 Candidatus Symbiobacter 633 2 0 1436289 genus species 1436290 0 1 Candidatus Symbiobacter mobilis 627 4 genus 47420 0 1 Hydrogenophaga 4642 105 3324 2 0 2610897 no rank 1382 Hydrogenophaga sp. RAC07 1 0 1842537 species 795665 species 0 1 1942 Hydrogenophaga sp. PBC 0 1763535 species 1 1213 Hydrogenophaga crassostreae 4 genus 283 0 1 6966 Comamonas 59 species 225992 0 1 Comamonas kerstersii 1338 Comamonas serinivorans 1744 0 species 1082851 1 1 0 285 species 3825 Comamonas testosteroni 1 225 Variovorax 10791 5 0 34072 genus 2091 Variovorax boronicumulans 1 436515 species 0 1 0 species 34073 4951 Variovorax paradoxus 663243 no rank 0 2 3524 1 species 1795631 0 1034 Variovorax sp. PAMC 28711 1 0 2126319 species Variovorax sp. PMC12 2490 0 174951 genus 2 18 3231 Ramlibacter 1 94132 species 0 1 3213 Ramlibacter tataouinensis 3 genus 52972 0 1 Polaromonas 2760 25 0 no rank 2638319 1 1319 0 296591 species 1 1319 Polaromonas sp. JS666 1 0 216465 species 1416 Polaromonas naphthalenivorans 1 23 Ottowia 2669 3 0 genus 219181 0 2645081 no rank 1 1144 1144 Ottowia sp. oral taxon 894 0 species 1658672 1 1502 Ottowia sp. KADR8-3 0 2109914 species 1 1 7 1574 Limnohabitans 3 0 665874 genus 2 0 no rank 2626134 1567 species 1678128 0 1 Limnohabitans sp. 63ED37-2 883 1 0 1678129 species 684 Limnohabitans sp. 103DPR2 12 Diaphorobacter 1451 1 0 genus 238749 2 1 0 species 1546149 1439 Diaphorobacter polyhydroxybutyrativorans 0 genus 2490452 2 1809 Comamonadaceae bacterium A1 878 1 1458425 species 0 Comamonadaceae bacterium B1 931 1 1458426 species 0 0 506 family 43 600 60295 Alcaligenaceae 1 genus 517 0 17 Bordetella 26632 956 1 1704 Bordetella genomosp. 9 1 0 1416803 species 94624 species 0 1 Bordetella petrii 1549 Bordetella bronchiseptica 2921 0 518 species 1 Bordetella genomosp. 8 1579 1 0 species 1416806 Bordetella avium 917 species 521 0 1 1 0 463024 species 1462 Bordetella genomosp. 6 1 0 species 463040 1666 Bordetella genomosp. 13 species 463025 0 1 Bordetella bronchialis 1799 1 0 35814 species 764 Bordetella holmesii Bordetella pertussis 1176 species 520 0 1 Bordetella pseudohinzii 1884 species 1331258 0 1 1 0 species 123899 1315 Bordetella trematum 0 no rank 2630031 1 1544 1 1697043 species 0 Bordetella sp. H567 1544 0 species 463014 1 1495 Bordetella flabilis 0 103855 species 1 Bordetella hinzii 2296 1 species 519 0 Bordetella parapertussis 1605 6 genus 222 0 1 22056 Achromobacter 770 2452 0 no rank 2626865 1 Achromobacter sp. AONIH1 2452 1 species 1758194 0 4258 Achromobacter denitrificans 32002 species 0 1 Achromobacter spanius 3972 1 0 217203 species 0 species 85698 1 8512 Achromobacter xylosoxidans Achromobacter insolitus 2092 0 species 217204 1 1 7 672 Oligella 2 0 genus 90243 Oligella urethralis 665 0 90245 species 1 1472344 genus 0 2 519 Basilea 14 1 Basilea psittacipulmonis 505 1 species 1472345 0 0 genus 507 2 10 2243 Alcaligenes 1 Alcaligenes faecalis 2233 0 species 511 1 1 1704 Orrella 36 2 genus 1921582 0 1668 Orrella dioscoreae 1 1851544 species 0 7 Advenella 1658 1 0 genus 290425 3 1 species 302406 0 Advenella mimigardefordensis 886 1 species 310575 0 Advenella kashmirensis 765 Taylorella 971 2 1 29574 genus 0 3 species 84590 0 1 Taylorella asinigenitalis 516 Taylorella equigenitalis 453 0 29575 species 1 1 0 1100891 genus 696 Paenalcaligenes hominis 696 species 643674 0 1 2 0 359336 genus 1 58 Castellaniella 1787 1 species 75697 0 1729 Castellaniella defragrans 1 3 Pusillimonas 757 2 0 genus 305976 0 no rank 2640016 1 754 Pusillimonas sp. T7-7 754 1 species 1007105 0 29 75682 family 0 1 35490 Oxalobacteraceae 326 6 963 genus 0 1 9055 Herbaspirillum 300 930 1 0 2624150 no rank 1 species 2025949 0 930 Herbaspirillum sp. meg3 Herbaspirillum frisingense 2366 1 0 92645 species 341045 species 0 1 Herbaspirillum hiltneri 1363 Herbaspirillum rubrisubalbicans 2017 1 species 80842 0 2079 Herbaspirillum seropedicae species 964 0 1 6 0 genus 149698 1 244 10505 Massilia Massilia putida 2054 1 0 species 1141883 2361 Massilia sp. ZMN-3 2072590 species 0 1 4201 2609279 no rank 0 2 1927 Massilia sp. WG5 1707785 species 0 1 1 1678028 species 0 Massilia sp. NR 4-1 2274 Massilia sp. B2 1645 1 0 2045208 species 0 genus 29580 7 128 7771 Janthinobacterium 1 0 55508 species 1 Janthinobacterium agaricidamnosum 1306 1709 Janthinobacterium svalbardensis 1 368607 species 0 0 no rank 2610881 4 4628 0 species 375286 1 Janthinobacterium sp. Marseille 603 1637 Janthinobacterium sp. LM6 1 0 1938606 species 672 Janthinobacterium sp. B9-8 1236179 species 0 1 species 1644131 0 1 1716 Janthinobacterium sp. 1_2014MBL_MicDiv 4 202907 genus 0 1 5528 Collimonas 110 species 279058 0 1 Collimonas arenae 1950 0 species 279113 1 1773 Collimonas pratensis 158899 species 0 1 Collimonas fungivorans 1695 3 303379 genus 0 1 964 Herminiimonas 17 Herminiimonas arsenicoxydans 498 0 species 204773 1 0 1809410 species 1 449 Herminiimonas arsenitoxidans Oxalobacter 1341 6 1 846 genus 0 2 847 species 0 1 1335 Oxalobacter formigenes 0 80841 no rank 2 2315 1326 Burkholderiales bacterium YL45 1834205 species 0 1 989 Burkholderiales bacterium GJ-E10 0 1469502 species 1 1 896 Burkholderiaceae 128441 84 0 119060 family genus 44013 0 4 Polynucleobacter 1165 1 1 1 0 species 1835254 352 Polynucleobacter duraquae 1 576610 species 0 404 Polynucleobacter necessarius 0 species 576611 1 Polynucleobacter asymbioticus 408 0 genus 32008 41 3836 67003 Burkholderia 1 9977 7 111527 species group 0 1 0 342113 species Burkholderia oklahomensis 1532 935 Burkholderia sp. MSMB0266 1637837 species 0 1 Burkholderia thailandensis 2404 0 species 57975 1 Burkholderia pseudomallei 2476 1 species 28450 0 0 species 1637841 1 891 Burkholderia sp. MSMB0852 848 Burkholderia sp. MSMB617WGS 1 1637831 species 0 Burkholderia mallei 891 1 13373 species 0 1 0 species 41899 Burkholderia plantarii 1692 12366 11 0 2613784 no rank 1473 Burkholderia sp. YI23 species 1097668 0 1 1 species 1795043 0 817 Burkholderia sp. PAMC 26561 0 758796 species 1 1524 Burkholderia sp. RPE67 0 640512 species 1 1363 Burkholderia sp. CCGE1003 1119 Burkholderia sp. Bp7605 1740163 species 0 1 1491 Burkholderia sp. HB1 1 1678678 species 0 1115 Burkholderia sp. KJ006 0 species 416344 1 1795874 species 0 1 708 Burkholderia sp. PAMC 28687 Burkholderia sp. 2002721687 802 1 0 species 1468409 Burkholderia sp. CCGE1001 1207 1 species 640510 0 Burkholderia sp. Bp5365 747 1 0 1740162 species 32989 19 0 species group 87882 1 488729 species 0 Burkholderia metallica 785 1 0 87883 species 2283 Burkholderia multivorans 5625 Burkholderia cepacia 1 292 species 0 1395 Burkholderia lata 1 482957 species 0 Burkholderia ambifaria 1406 species 152480 0 1 [Pseudomonas] mesoacidophila 1028 0 265293 species 1 880 Burkholderia territorii 1 1503055 species 0 845 Burkholderia pyrrocinia 60550 species 0 1 902 Burkholderia diffusa 488732 species 0 1 0 species 1503054 1 Burkholderia stagnalis 1002 993 Burkholderia contaminans 1 0 species 488447 1 0 species 152500 833 Burkholderia dolosa 95485 species 0 1 Burkholderia stabilis 1727 Burkholderia cenocepacia 5262 0 95486 species 1 Burkholderia ubonensis 3337 101571 species 0 1 1176 Burkholderia pseudomultivorans species 1207504 0 1 species 488446 0 1 Burkholderia latens 820 1698 Burkholderia vietnamiensis 1 0 60552 species 992 Burkholderia seminalis 1 0 species 488731 Burkholderia gladioli 3269 1 0 species 28095 1 species 337 0 Burkholderia glumae 2874 1303 1 0 genus 1827195 1303 Burkholderia sp. RPE64 758793 species 0 1 1 17137 Paraburkholderia 374 12 1822464 genus 0 1467 Paraburkholderia xenovorans 1 species 36873 0 2233 Paraburkholderia caribensis 1 0 species 75105 Paraburkholderia sprentiae 1277 1 948107 species 0 Paraburkholderia phymatum 1530 0 species 148447 1 1 species 252970 0 Paraburkholderia phenoliruptrix 1496 0 2026199 species 1 Paraburkholderia aromaticivorans 1509 1 0 2615204 no rank 1156 1156 Paraburkholderia sp. SOS3 species 1926494 0 1 1357 Paraburkholderia fungorum species 134537 0 1 1 species 311230 0 Paraburkholderia terrae 1708 Paraburkholderia phytofirmans 1261 1 261302 species 0 1769 Paraburkholderia hospita 1 0 169430 species 1 Pandoraea 9947 272 10 genus 93217 0 1 93221 species 0 Pandoraea pulmonicola 1205 1 0 species 93219 925 Pandoraea norimbergensis 0 species 445709 1 964 Pandoraea thiooxydans 1 species 656179 0 994 Pandoraea faecigallinarum 950 Pandoraea sputorum 1 0 93222 species 1132 Pandoraea oxalativorans 1 573737 species 0 656178 species 0 1 Pandoraea vervacti 989 0 93220 species 1 Pandoraea pnomenusa 1318 1 species 93218 0 Pandoraea apista 1198 284 Ralstonia 12957 1 0 genus 48736 5 Ralstonia pickettii 2912 1 0 species 329 0 305 species 1 Ralstonia solanacearum 6195 105219 species 0 1 Ralstonia mannitolilytica 1768 190721 species 0 1 1798 Ralstonia insidiosa 814 Cupriavidus 17547 1 0 genus 106589 9 Cupriavidus sp. USMAA1020 2252 367825 species 0 1 2 0 no rank 2640874 4496 2230 Cupriavidus sp. USMAHM13 1389192 species 0 1 876364 species 0 1 2266 Cupriavidus sp. USMAA2-4 1 0 species 68895 Cupriavidus basilensis 2204 1572 Cupriavidus pinatubonensis species 248026 0 1 1505 Cupriavidus metallidurans 1 0 species 119219 1620 Cupriavidus gilardii 0 species 82541 1 106590 species 0 1 Cupriavidus necator 3084 486 1 0 2571159 genus Paraburkholderia rhizoxinica 486 0 species 412963 1 18425 17 224471 no rank 0 0 318147 genus 2 52 Paucibacter 1723 1 1671 1 0 2642959 no rank 1671 Paucibacter sp. KCTC 42545 1 0 species 1768242 1689 [Polyangium] brachysporum 413882 species 0 1 0 genus 316612 2 48 1567 Methylibium 1 Methylibium petroleiphilum 1519 species 105560 0 1 2 genus 212743 0 1 Rhizobacter 2132 94 2038 Rhizobacter gummiphilus 1 species 946333 0 2 0 genus 88 1 65 Leptothrix 1928 Leptothrix cholodnii 1863 34029 species 0 1 genus 93681 0 2 Roseateles 2174 75 1 2099 Roseateles depolymerans 1 76731 species 0 2 65047 genus 0 1 1959 Mitsuaria 87 1872 2648776 no rank 0 1 Mitsuaria sp. 7 1872 0 species 1658665 1 28067 genus 0 2 Rubrivivax 2779 76 1 0 28068 species 1 Rubrivivax gelatinosus 2703 2 32012 genus 0 1 2474 Thiomonas 48 1 0 species 926 2426 Thiomonas intermedia 2 no rank 33809 0 2013 species 1904640 0 1 Betaproteobacteria bacterium GR16-43 1668 beta proteobacterium CB 345 1 543913 species 0 11 no rank 119066 0 3922 1 0 1381133 genus 123 1 669502 species 0 Candidatus Profftella armatura 123 23 1 0 189384 genus 23 Candidatus Tremblaya princeps 1 species 189385 0 77 1 genus 1301080 0 1 0 1160784 species Candidatus Nasuia deltocephalinicola 77 2 genus 327159 0 1 Candidatus Accumulibacter 1850 12 Candidatus Accumulibacter phosphatis 1838 0 species 327160 1 Kinetoplastibacterium 1849 10 1 genus 33055 0 6 1 species 994692 0 396 Candidatus Kinetoplastibacterium desouzaii Candidatus Kinetoplastibacterium oncopeltii 318 1 species 994696 0 418 Candidatus Kinetoplastibacterium galatii 0 994695 species 1 418 Candidatus Kinetoplastibacterium crithidii 0 species 33056 1 species 233181 0 1 Kinetoplastibacterium blastocrithidii 289 22 0 order 206389 1 408 Rhodocyclales 21712 9 Azonexaceae 1111 1 0 2008795 family 3 2 73029 genus 0 1 1102 Dechloromonas 15 1 0 species 259537 1087 Dechloromonas aromatica 1 359 Zoogloeaceae 15061 12 0 family 2008794 5 12960 genus 0 1 Azoarcus 6096 186 418699 species 0 1 Azoarcus olearius 1270 1305 Azoarcus sp. SY39 1 0 2067960 species 2 0 2629479 no rank 3335 1552 Azoarcus sp. KH32C 0 748247 species 1 1 species 198107 0 1783 Azoarcus sp. CIB Thauera 8606 264 1 33057 genus 0 6 no rank 2609274 0 2 4419 Thauera sp. MZ1T 2152 1 0 85643 species Thauera sp. K11 2267 1 0 2005884 species Thauera aromatica 1309 1 species 59405 0 Thauera chlorobenzoica 1209 1 0 96773 species 1 0 1134435 species 1405 Thauera humireducens 6 0 family 75787 1 146 5132 Rhodocyclaceae 1096 no rank 75788 0 1 1096 Rhodocyclaceae bacterium 0 1898103 species 1 1 68 2441 Azospira 2 0 genus 146937 Azospira oryzae 2373 146939 species 0 1 1 1449 Aromatoleum 25 2 551759 genus 0 1424 Aromatoleum aromaticum 0 551760 species 1 560 28211 class 0 1 486365 Alphaproteobacteria 2166 4 0 order 255473 1 1 Parvularculales 487 family 255474 0 3 Parvularculaceae 486 9 1 4 Parvularcula 477 1 0 208215 genus 2 1 0 species 208216 Parvularcula bermudensis 473 0 order 204441 66 730 Rhodospirillales 71025 1 40683 Rhodospirillaceae 794 1 41295 family 0 30 genus 1543704 0 2 2243 Niveispirillum 25 1 2218 Niveispirillum cyanobacteriorum 1 1612173 species 0 2 1543705 genus 0 1 2723 Nitrospirillum 21 0 species 28077 1 Nitrospirillum amazonense 2702 1 2158 Tistrella 45 2 genus 171436 0 171437 species 0 1 2113 Tistrella mobilis 1199 Magnetospira 11 1 genus 1182780 0 2 1188 1 no rank 2685734 0 Magnetospira sp. QH-2 1188 0 1288970 species 1 1 2135 Thalassospira 18 3 168934 genus 0 Thalassospira sp. CSC3H3 1081 1 2048283 species 0 1 0 220697 species 1036 Thalassospira xiamenensis 0 genus 1081 3 35 Rhodospirillum 3491 1 Rhodospirillum centenum 2035 34018 species 0 1 1085 species 0 1 Rhodospirillum rubrum 1421 2 0 genus 1804663 1 59 Haematospirillum 614 Haematospirillum jordaniae 555 0 species 1549855 1 9906 Magnetospirillum 216 1 13134 genus 0 5 Magnetospirillum gryphiswaldense 2542 0 species 55518 1 species 84159 0 1 Magnetospirillum magneticum 2169 2 0 no rank 2617991 4979 1 0 species 1639348 Magnetospirillum sp. ME-1 2534 Magnetospirillum sp. XM-1 2445 1 species 1663591 0 1 genus 1263978 0 566 Candidatus Endolissoclinum faulkneri 566 1 0 species 1263979 2 0 1612157 genus 1 18 997 Pararhodospirillum Pararhodospirillum photometricum 979 species 1084 0 1 1 13857 Azospirillum 233 5 191 genus 0 1226968 species 0 1 Azospirillum humicireducens 1443 193 species 0 1 Azospirillum lipoferum 4972 1 species 192 0 4216 Azospirillum brasilense 0 species 528244 1 2993 Azospirillum thiophilum 1 447 Acetobacteraceae 29612 35 0 family 433 2 1602345 genus 0 1 Parasaccharibacter 780 3 1 1510841 species 0 Parasaccharibacter apium 777 0 genus 320496 2 20 Neoasaia 885 1 1 0 species 320497 Neoasaia chiangmaiensis 865 852 Kozakia 16 1 genus 153497 0 2 1 species 153496 0 836 Kozakia baliensis 1 2684 Acidiphilium 139 3 522 genus 0 species 524 0 1 Acidiphilium cryptum 1253 Acidiphilium multivorum 1292 1 62140 species 0 0 125216 genus 3 94 Roseomonas 4286 1 2275 1 0 no rank 2617492 1 species 2018065 0 2275 Roseomonas sp. FDAARGOS_362 species 257708 0 1 Roseomonas gilardii 1917 genus 434 0 8 Acetobacter 7637 77 1 1 species 65959 0 723 Acetobacter pomorum 882 1 151157 subgenus 0 1 species 435 0 Acetobacter aceti 882 1 0 species 1633874 835 Acetobacter oryzifermentans 1 0 446692 species 847 Acetobacter senegalensis Acetobacter tropicalis 945 species 104102 0 1 2450 Acetobacter pasteurianus 438 species 0 1 species 1076596 0 1 Acetobacter persici 878 0 genus 364409 2 12 Granulibacter 2251 1 Granulibacter bethesdensis 2239 1 364410 species 0 1434011 genus 0 5 5063 Komagataeibacter 124 1 1177712 species 0 1 Komagataeibacter medellinensis 934 species 28448 0 1 2125 Komagataeibacter xylinus 0 265960 species 1 Komagataeibacter nataicola 1092 Komagataeibacter europaeus 788 33995 species 0 1 2 genus 91914 0 1 Asaia 805 6 Asaia bogorensis 799 0 species 91915 1 1 61 1213 Gluconacetobacter 2 0 genus 89583 species 33996 0 1 1152 Gluconacetobacter diazotrophicus 1 34 Gluconobacter 2709 3 0 441 genus 0 species 318683 1 Gluconobacter albidus 786 1 442 species 0 Gluconobacter oxydans 1889 5 0 2800060 order 2244 2244 Hyphomonadaceae 35 1 family 69657 0 5 570 1 2723 genus 0 2724 species 0 1 570 Hirschia baltica 55 1639 Hyphomonas 1 0 genus 85 3 Hyphomonas neptunium 959 1 81032 species 0 625 1 0 no rank 2630699 625 Hyphomonas sp. Mor2 0 1906738 species 1 0 356 order 210 2537 Rhizobiales 212516 1 60 8329 Brucellaceae 1 0 family 118882 20 0 528 genus 5 103 4391 Ochrobactrum 1 1 species 419475 0 Ochrobactrum pseudogrignonense 1008 1258 Ochrobactrum anthropi species 529 0 1 1083 Ochrobactrum pituitosum 571256 species 0 1 0 species 271865 1 939 Ochrobactrum sp. A44 1382 Brucella 3878 1 0 genus 234 14 Brucella canis 191 0 36855 species 1 species 120576 0 1 Brucella pinnipedialis 199 0 2632610 no rank 4 1191 0 1149952 species 1 Brucella sp. 09RB8471 355 1 0 1885919 species 444 Brucella sp. 141012304 species 1891098 0 1 Brucella sp. 2002734562 73 Brucella sp. 09RB8910 319 1 0 1844051 species 981386 species 0 1 363 Brucella vulpis 1 species 444163 0 61 Brucella microti 1 0 species 29461 Brucella suis 97 Brucella ovis 34 1 0 236 species Brucella abortus 107 1 235 species 0 0 species 29459 1 Brucella melitensis 92 1 120577 species 0 Brucella ceti 161 7 0 255475 family 1 40 6652 Aurantimonadaceae 1 Aureimonas 1702 54 2 414371 genus 0 1648 2615206 no rank 0 1 1 1349819 species 0 1648 Aureimonas sp. AU20 4 genus 293088 0 1 4910 Martelella 144 1831 Martelella endophytica 1 species 1486262 0 0 no rank 2629616 1 1563 1563 Martelella sp. AD-3 1 0 species 686597 0 293089 species 1 Martelella mediterranea 1372 0 family 335928 7 100 Xanthobacteraceae 6277 1 1 1919 Starkeya 40 2 152053 genus 0 1 0 species 921 1879 Starkeya novella 2 6 genus 0 1 2267 Azorhizobium 55 1 0 species 7 2212 Azorhizobium caulinodans 1 33 1991 Xanthobacter 2 0 279 genus Xanthobacter autotrophicus 1958 1 0 species 280 4 0 2036754 family 1 39 Chelatococcaceae 3403 28209 genus 0 3 Chelatococcus 3364 133 1 Chelatococcus daeguensis 1237 1 0 444444 species 1994 1 0 2638111 no rank Chelatococcus sp. CO-6 1994 1 0 species 1702325 730 Rhizobiaceae 72467 1 0 family 82115 53 34019 genus 0 6 Liberibacter 3918 54 1 1 species 309868 0 659 Candidatus Liberibacter americanus 0 species 34020 1 Candidatus Liberibacter africanus 616 Candidatus Liberibacter asiaticus 930 species 34021 0 1 Liberibacter crescens 925 1 0 1273132 species Candidatus Liberibacter solanacearum 734 1 species 556287 0 15512 0 no rank 227292 10 1 Ensifer 3021 17 3 genus 106591 0 Ensifer sojae 1413 1 species 716925 0 0 106592 species 1 1591 Ensifer adhaerens 7 0 genus 28105 1 296 12491 Sinorhizobium 3158 663276 species group 0 1 Sinorhizobium fredii 3158 1 0 species 380 3134 2 0 no rank 2613772 Sinorhizobium sp. RAC02 1905 1 0 1842534 species 794846 species 0 1 1229 Sinorhizobium sp. CCBAU 05631 1 0 194963 species Sinorhizobium americanum 1862 Sinorhizobium meliloti 2927 1 0 382 species 1 species 110321 0 1114 Sinorhizobium medicae 1 15 Shinella 2244 2 0 323620 genus 2229 1 no rank 2643062 0 1 0 species 879274 Shinella sp. HZN7 2229 50063 34 0 227290 no rank 1 9 Neorhizobium 2439 2 0 1525371 genus 0 species 399 1 2430 Neorhizobium galegae 279 Agrobacterium 12643 1 0 357 genus 7 6787 0 1183400 species group 2 Agrobacterium fabrum 1390 species 1176649 0 1 Agrobacterium tumefaciens 5397 0 species 358 1 1 0 373 species Agrobacterium vitis 1433 359 species 0 1 1407 Agrobacterium rhizogenes 2 2632611 no rank 0 2737 1 0 species 1842536 Agrobacterium sp. RAC06 1428 1309 Agrobacterium sp. H13-3 0 861208 species 1 1 34981 Rhizobium 2161 25 379 genus 0 1 0 species 56730 1964 Rhizobium gallicum species 396 0 1 2179 Rhizobium phaseoli Rhizobium leguminosarum 7704 1 384 species 0 1 0 species 29449 Rhizobium etli 3992 15436 19 2613769 no rank 0 Rhizobium sp. NXC14 909 0 1981173 species 1 1 1703966 species 0 200 Rhizobium sp. N731 1165 Rhizobium sp. IRBG74 1 species 424182 0 0 species 1914541 1 Rhizobium sp. Y9 1245 1 species 1703969 0 Rhizobium sp. N324 1142 1182 Rhizobium sp. IE4771 0 1301032 species 1 Rhizobium sp. NXC24 1380 0 species 2048897 1 1079 Rhizobium sp. CIAT894 1 species 2020312 0 0 1703960 species 1 Rhizobium sp. N113 3 1452 Rhizobium sp. 10195 1 0 species 2028343 2020313 species 0 1 Rhizobium sp. TAL182 252 species 1703961 0 1 Rhizobium sp. N1314 200 species 1703962 0 1 11 Rhizobium sp. N1341 1175 Rhizobium sp. NT-26 0 species 1125847 1 1 species 1703967 0 10 Rhizobium sp. N741 0 2020311 species 1 953 Rhizobium sp. Kim5 0 species 1571470 1 Rhizobium sp. ACO-34A 1909 1168 Rhizobium sp. S41 1 0 1869170 species 1 0 1703968 species Rhizobium sp. N871 1 1545 Rhizobium tropici 1 0 398 species 19097 Phyllobacteriaceae 226 1 family 69277 0 20 9 genus 68287 0 1 12463 Mesorhizobium 345 1396 Mesorhizobium opportunistum 593909 species 0 1 0 species 536018 1 Mesorhizobium australicum 1228 1 0 species 71433 1462 Mesorhizobium amorphae 0 325217 no rank 1 1649 Mesorhizobium sp. WSM1497 1649 1 0 278153 species 0 2066070 species 1 1516 Mesorhizobium japonicum 0 1670800 species 1 Mesorhizobium sp. B7 1286 Mesorhizobium ciceri 2099 1 0 species 39645 species 381 0 1 Mesorhizobium loti 1482 genus 28100 0 2 1189 Phyllobacterium 12 1 0 species 1867719 1 1177 Phyllobacterium zundukense 1 1061 Chelativorans 17 2 449972 genus 0 1 2643807 no rank 0 1044 Chelativorans sp. BNC1 1044 1 0 species 266779 genus 245876 0 2 Nitratireductor 1275 16 1 Nitratireductor basaltis 1259 1 472175 species 0 0 genus 31988 2 35 Aminobacter 1879 1 1 species 83263 0 1844 Aminobacter aminovorans 1 18 1004 Hoeflea 2 0 274591 genus 1 0 no rank 2614931 986 Hoeflea sp. IMCC20628 986 0 1620421 species 1 5 family 45404 0 1 1725 Beijerinckiaceae 24 2 120652 genus 0 1 Methylocella 780 14 1 0 species 199596 Methylocella silvestris 766 1 2 921 Beijerinckia 2 0 532 genus 919 Beijerinckia indica 1 533 species 0 family 772 0 18 7562 Bartonellaceae 21 1 Bartonella 7541 93 1 773 genus 0 17 Bartonella vinsonii 318 1 species 33047 0 no rank 2645622 0 6 2466 462 Bartonella sp. A1379B 1 0 species 1933910 1 0 1933912 species 452 Bartonella sp. Raccoon60 species 1933904 0 1 326 Bartonella sp. WD16.2 1933906 species 0 1 Bartonella sp. JB15 353 353 Bartonella sp. JB63 1933907 species 0 1 520 Bartonella sp. 1-1C 1 515256 species 0 Bartonella quintana 274 species 803 0 1 263 Bartonella australis 388640 species 0 1 1615 Bartonella apis 1 0 1686310 species 1 1318743 species 0 Bartonella ancashensis 398 1 0 774 species Bartonella bacilliformis 317 Bartonella tribocorum 531 85701 species 0 1 33045 species 0 1 348 Bartonella grahamii Bartonella henselae 482 38323 species 0 1 1 0 species 56426 436 Bartonella clarridgeiae 0 family 119045 15 129 22544 Methylobacteriaceae 1 9 407 genus 0 1 12668 Methylobacterium 762 Methylobacterium phyllosphaerae 1186 1 0 species 418223 1 0 114616 species Methylobacterium nodulans 1625 3 0 2615210 no rank 4643 925818 species 0 1 1314 Methylobacterium sp. AMS5 426117 species 0 1 Methylobacterium sp. 4-46 1777 1 species 1479019 0 1552 Methylobacterium sp. C1 Methylobacterium oryzae 1254 1 0 334852 species 1 270351 species 0 1657 Methylobacterium aquaticum 1541 Methylobacterium radiotolerans 1 31998 species 0 3 0 2282523 genus 7772 1 species 29429 0 Methylobacterium zatmanii 1121 Methylobacterium populi 2394 223967 species 0 1 Methylobacterium extorquens 4257 0 408 species 1 186650 genus 0 2 Microvirga 1975 40 1 1 species 1882682 0 1935 Microvirga ossetica 1 95 14040 Hyphomicrobiaceae 19 0 family 45401 1 10 Filomicrobium 640 2 0 genus 119044 630 Candidatus Filomicrobium marinum 1 1608628 species 0 1 53 3823 Hyphomicrobium 4 0 genus 81 Hyphomicrobium nitrativorans 1161 0 1427356 species 1 Hyphomicrobium denitrificans 1570 1 0 53399 species 1039 1 0 2619925 no rank 0 717785 species 1 Hyphomicrobium sp. MC1 1039 1068 genus 0 2 1010 Rhodomicrobium 66 1 944 Rhodomicrobium vannielii 1 0 species 1069 2 0 genus 29407 1 41 Rhodoplanes 1630 1589 1 no rank 2619116 0 1589 Rhodoplanes sp. Z2-YC6860 1 species 674703 0 110 4094 Devosia 1 0 genus 46913 4 3 no rank 196773 0 3984 Devosia sp. H5989 1546 1 0 species 1643450 1 species 1736675 0 1708 Devosia sp. A16 1 0 2083786 species Devosia sp. I507 730 0 genus 1082930 2 10 Pelagibacterium 989 1 979 Pelagibacterium halotolerans species 531813 0 1 2 59282 genus 0 1 1759 Blastochloris 102 1079 species 0 1 1657 Blastochloris viridis 6 0 31993 family 1 7 Methylocystaceae 3379 45 Methylosinus 1539 1 0 425 genus 2 1 0 species 426 1494 Methylosinus trichosporium 1 1833 Methylocystis 34 3 genus 133 0 936 Methylocystis bryophila 1 0 species 655015 863 no rank 2625913 0 1 0 species 187303 1 863 Methylocystis sp. SC2 480 Bradyrhizobiaceae 39388 1 0 family 41294 26 45 Variibacter 890 1 0 genus 1649510 2 0 1333996 species 1 Variibacter gotjawalensis 845 Nitrobacter 1658 15 1 911 genus 0 3 913 species 0 1 Nitrobacter winogradskyi 770 Nitrobacter hamburgensis 873 0 species 912 1 0 374 genus 11 576 Bradyrhizobium 20176 1 1 0 1355477 species 3052 Bradyrhizobium diazoefficiens 44255 species 0 1 Bradyrhizobium oligotrophicum 1644 Bradyrhizobium icense 1543 1 0 species 1274631 10482 6 no rank 2631580 0 1 species 2057741 0 1838 Bradyrhizobium sp. SK17 species 376 0 1 Bradyrhizobium sp. 1468 288000 species 0 1 1822 Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. ORS 285 1773 0 115808 species 1 1511 Bradyrhizobium sp. CCGE-LA001 0 species 1223566 1 species 114615 0 1 2070 Bradyrhizobium sp. ORS 278 2879 Bradyrhizobium japonicum species 375 0 1 1 18 Oligotropha 1009 2 0 40136 genus Oligotropha carboxidovorans 991 species 40137 0 1 genus 85413 0 5 Bosea 6571 315 1 1 0 1526658 species 1875 Bosea vaviloviae 4381 0 2653178 no rank 3 species 1842539 0 1 1437 Bosea sp. RAC05 0 species 2015316 1 Bosea sp. AS-1 1566 Bosea sp. PAMC 26642 1378 1 0 1792307 species genus 1073 0 2 8604 Rhodopseudomonas 71 1 1 0 species 1076 8533 Rhodopseudomonas palustris 119042 no rank 0 6 3985 1 Pseudorhodoplanes 1065 71 2 genus 1734920 0 species 1235591 0 1 994 Pseudorhodoplanes sinuspersici 2 0 genus 1572860 1 34 Hartmannibacter 1558 1482074 species 0 1 Hartmannibacter diazotrophicus 1524 24 1362 Methyloceanibacter 1 0 genus 1484898 2 1384459 species 0 1 Methyloceanibacter caenitepidi 1338 11 1131 Rhodobiaceae 1 0 family 119043 3 0 256616 genus 2 10 Parvibaculum 1120 1 1 0 256618 species Parvibaculum lavamentivorans 1110 1 1 Pelagibacterales 2137 9 0 54526 order 5 Pelagibacteraceae 1731 1 0 family 1655514 6 3 0 genus 198251 1 3 Candidatus Pelagibacter 750 425 Candidatus Pelagibacter ubique 1 0 species 198252 322 1 2647897 no rank 0 Candidatus Pelagibacter sp. IMCC9063 322 species 1002672 0 1 976 2 no rank 1655516 0 511 alpha proteobacterium HIMB5 species 859653 0 1 0 744985 species 1 alpha proteobacterium HIMB59 465 2 0 2045213 genus 1 1 Candidatus Fonsibacter 405 Candidatus Fonsibacter ubiquis 404 0 1925548 species 1 0 order 1921002 7 9 945 Holosporales 1 0 44746 family 1 461 0 204454 no rank 1 461 461 endosymbiont of Acanthamoeba sp. UWC8 1 0 86106 species 4 190 Candidatus Paracaedibacteraceae 1 0 family 1777752 3 2 0 genus 1521255 1 34 186 Candidatus Paracaedibacter Candidatus Paracaedibacter acanthamoebae 152 1 0 91604 species 1 Caedimonadaceae 285 1 2 2100208 family 0 genus 1509243 0 1 284 284 Candidatus Nucleicultrix amoebiphila 0 species 1509244 1 1 22712 Caulobacterales 165 20 order 204458 0 0 family 76892 19 364 22547 Caulobacteraceae 1 41275 genus 0 7 8392 Brevundimonas 510 1 3774 3 0 no rank 2622653 Brevundimonas sp. GW460-12-10-14-LB2 1089 1 species 1827469 0 1 0 species 1938605 Brevundimonas sp. LM2 1473 1212 Brevundimonas sp. DS20 1 0 species 1532555 1398 Brevundimonas subvibrioides 0 74313 species 1 0 41276 species 1 Brevundimonas vesicularis 1391 species 588932 0 1 1319 Brevundimonas naejangsanensis 188 9369 Caulobacter 1 0 75 genus 6 1 69666 species 0 1602 Caulobacter mirabilis 1 0 88688 species 1606 Caulobacter segnis 1 0 species 69395 1115 Caulobacter henricii 0 2648921 no rank 1 2132 366602 species 0 1 Caulobacter sp. K31 2132 Caulobacter vibrioides 2726 species 155892 0 1 0 no rank 81440 1 728 Caulobacteraceae bacterium OTSz_A_272 728 1 0 species 1759059 0 76890 genus 2 18 Asticcacaulis 1673 1 1 0 78587 species Asticcacaulis excentricus 1655 Phenylobacterium 2021 13 1 20 genus 0 2 1 0 species 284016 Phenylobacterium zucineum 2008 766 order 0 53 12010 Rickettsiales 25 1 no rank 1699067 0 1 433 0 species 1528098 1 Rickettsiales bacterium Ac37b 433 0 family 1328881 1 171 171 1 411566 genus 0 1 234827 species 0 171 Candidatus Midichloria mitochondrii 1 6 5380 Anaplasmataceae 22 0 family 942 8 952 tribe 0 2258 1 2258 Wolbachia 37 8 genus 953 0 2221 7 no rank 2640676 0 Wolbachia endosymbiont of Drosophila melanogaster 344 163164 species 0 1 0 246273 species 1 Wolbachia endosymbiont of Cimex lectularius 181 312 Wolbachia sp. wRi 0 species 66084 1 1 77551 species 0 220 Wolbachia endosymbiont of Onchocerca volvulus 178 Wolbachia endosymbiont of Onchocerca ochengi 1 species 100901 0 Wolbachia endosymbiont of Brugia malayi 278 species 80849 0 1 77038 species 0 1 708 Wolbachia endosymbiont of Drosophila simulans 6 943 genus 0 1 Ehrlichia 1787 41 4 0 species group 106178 1321 1 945 species 0 260 Ehrlichia chaffeensis species 779 0 1 394 Ehrlichia ruminantium Ehrlichia canis 258 1 species 944 0 35795 species 0 1 409 Ehrlichia muris 425 no rank 106181 0 1 391036 species 0 1 425 Ehrlichia sp. HF 33993 genus 0 4 Neorickettsia 704 2 1 1 33994 species 0 Neorickettsia helminthoeca 290 950 species 0 1 209 Neorickettsia risticii 1 0 951 species 203 Neorickettsia sennetsu 3 genus 768 0 625 107 Anaplasma marginale 1 770 species 0 106179 species group 0 1 277 species 948 0 1 Anaplasma phagocytophilum 277 Anaplasma centrale 241 1 769 species 0 28 775 family 0 1 6001 Rickettsiaceae 5 1 Candidatus Phycorickettsia 551 1 0 genus 2115980 2 0 2115978 species 1 550 Candidatus Phycorickettsia trachydisci 25 0 33988 tribe 5445 1 Rickettsia 4846 513 23 780 genus 0 716 species group 114292 0 2 336 Rickettsia prowazekii 1 species 782 0 Rickettsia typhi 380 species 785 0 1 853 2 0 species group 1129742 Rickettsia bellii 635 1 0 33990 species 218 Rickettsia canadensis 1 0 788 species species group 114277 0 17 2294 0 35790 species 1 19 Rickettsia japonica Rickettsia felis 483 1 0 42862 species species 33991 0 1 27 Rickettsia montanensis 0 47589 species 1 Rickettsia peacockii 168 781 species 0 1 Rickettsia conorii 35 1 0 species 35792 24 Rickettsia parkeri Rickettsia rickettsii 38 783 species 0 1 293 Rickettsia akari species 786 0 1 88 Rickettsia africae 1 0 species 35788 1 0 109232 species 260 Rickettsia monacensis 30 Rickettsia slovaca species 35794 0 1 species 1105106 0 1 35 Rickettsia philipii 0 species 226665 1 Rickettsia heilongjiangensis 29 1 0 species 33989 83 Rickettsia amblyommatis 1 0 species 33992 154 Rickettsia rhipicephali 35791 species 0 1 Rickettsia massiliae 39 Rickettsia australis 489 1 0 787 species 470 1 no rank 114295 0 470 Rickettsia endosymbiont of Bemisia tabaci 1 species 337479 0 69474 genus 0 2 Orientia 599 3 1 Orientia tsutsugamushi 596 1 species 784 0 1 633 Sphingomonadales 72880 82 0 order 204457 802 Sphingomonadaceae 57320 1 0 family 41297 59 15 165695 genus 0 1 Sphingobium 14904 386 989 Sphingobium japonicum 1 0 species 332056 716 Sphingobium herbicidovorans 0 76947 species 1 species 1673076 0 1 928 Sphingobium hydrophobicum species 332055 0 1 1114 Sphingobium indicum Sphingobium cloacae 991 species 120107 0 1 1 0 1332080 species Sphingobium baderi 783 0 13690 species 1 1148 Sphingobium yanoikuyae 1155 Sphingobium chlorophenolicum 46429 species 0 1 0 2611147 no rank 6 6694 1 1855519 species 0 Sphingobium sp. EP60837 818 1616 Sphingobium sp. TKS 1315974 species 0 1 1318 Sphingobium sp. YBL2 0 484429 species 1 827 Sphingobium sp. MI1205 407020 species 0 1 1 0 1843368 species 984 Sphingobium sp. RAC03 1131 Sphingobium sp. SYK-6 0 627192 species 1 1 5378 Novosphingobium 74 5 genus 165696 0 1257 1 no rank 2644732 0 Novosphingobium sp. PP1Y 1257 702113 species 0 1 1 0 species 158500 1512 Novosphingobium resinovorum Novosphingobium pentaromativorans 1465 205844 species 0 1 48935 species 0 1 Novosphingobium aromaticivorans 1070 2 0 541 genus 1 14 Zymomonas 977 1 542 species 0 963 Zymomonas mobilis 1 Blastomonas 1302 42 2 genus 150203 0 1260 1 no rank 2626550 0 1 0 species 1842535 Blastomonas sp. RAC04 1260 997 2685927 genus 0 1 1921510 species 0 1 Sphingomonas sp. JJ-A5 997 1 9593 Sphingopyxis 316 10 genus 165697 0 Sphingopyxis terrae 808 1 species 33052 0 1 267128 species 0 978 Sphingopyxis granuli 1102 Sphingopyxis fribergensis 1 0 1515612 species 0 species 117207 1 1035 Sphingopyxis alaskensis 1 0 species 33050 1842 Sphingopyxis macrogoltabida 0 no rank 2614943 4 3512 1020 Sphingopyxis sp. MG 1 0 1866325 species 0 species 1357916 1 Sphingopyxis sp. QXT-31 1027 1 292913 species 0 Sphingopyxis sp. 113P3 855 1 species 1913578 0 Sphingopyxis sp. LPB0140 610 Citromicrobium 943 12 1 genus 72173 0 2 2630544 no rank 0 1 931 1 0 species 1634516 Citromicrobium sp. JL477 931 13687 genus 0 15 19083 Sphingomonas 451 1 2004 Sphingomonas wittichii 4003 1 0 160791 species 2 Sphingomonas sp. DC-6 1999 1 0 1283312 strain 1257 Sphingomonas melonis 152682 species 0 1 6760 no rank 196159 0 6 1 0 species 1938607 1036 Sphingomonas sp. LM7 0 745310 species 1 1322 Sphingomonas sp. MM-1 1133 Sphingomonas sp. NIC1 0 1961362 species 1 0 1030157 species 1 Sphingomonas sp. KC8 946 1247 Sphingomonas sp. LK11 1 0 1390395 species Sphingomonas sp. Cra20 1076 1 0 1327635 species 1 0 species 1609977 Sphingomonas hengshuiensis 1596 1123 Sphingomonas panacis 1 species 1560345 0 species 93064 0 1 Sphingomonas koreensis 1086 1456 Sphingomonas taxi 1 species 1549858 0 1 0 species 397260 Sphingomonas sanxanigenens 1351 624 0 genus 2709685 1 Sphingorhabdus flavimaris 624 0 species 266812 1 1 10 Rhizorhabdus 1331 2 0 1649486 genus 0 species 1850238 1 Rhizorhabdus dicambivorans 1321 1 46 Sphingorhabdus 1386 3 0 genus 1434046 1340 2 0 2614947 no rank Sphingorhabdus sp. YGSMI21 646 0 species 2077182 1 0 species 1806885 1 694 Sphingorhabdus sp. M41 22 family 335929 0 1 14927 Erythrobacteraceae 263 2 genus 1855416 0 1695 Erythrobacter flavus 995 1 0 species 192812 Erythrobacter seohaensis 700 1 266951 species 0 0 2800682 genus 1 998 species 645517 0 1 Altererythrobacter namhicola 998 1 53 2098 Croceicoccus 3 0 genus 1295327 1348774 species 0 1 885 Croceicoccus naphthovorans 1160 Croceicoccus marinus 1 species 450378 0 1689 2 0 2800681 genus Erythrobacter gangjinensis 1247 0 502682 species 1 0 1648404 species 1 442 Erythrobacter atlanticus 1 175 2188 Altererythrobacter 4 0 361177 genus 834 Altererythrobacter atlanticus species 1267766 0 1 828 Altererythrobacter epoxidivorans 1 361183 species 0 Altererythrobacter ishigakiensis 351 1 species 476157 0 0 2800788 no rank 6 4079 1 2277 Erythrobacter 177 3 genus 1041 0 1112 species 0 1 703 Porphyrobacter neustonensis 39960 species 0 1 1397 Erythrobacter litoralis 0 genus 1111 3 87 Porphyrobacter 1802 1 2683265 no rank 0 2 1715 982 Porphyrobacter HT-58-2 0 2023229 species 1 Porphyrobacter sp. LM 6 733 1 species 1896196 0 691 1 0 genus 2800685 1 543877 species 0 691 Altererythrobacter marensis 0 2800686 genus 2 1226 0 species 1982042 1 518 Altererythrobacter mangrovi 1 692370 species 0 Altererythrobacter dongtanensis 708 7 0 no rank 82117 4715 Phreatobacter 1846 54 1 1632780 genus 0 2 1 0 1868589 species 1792 Phreatobacter sp. S-12 12 Micavibrio 1050 1 0 213485 genus 2 Micavibrio aeruginosavorus 1038 species 349221 0 1 clade 62654 0 1 426 426 767891 genus 0 1 1 0 767892 species 426 Candidatus Puniceispirillum marinum 1 20 1393 Polymorphum 2 0 genus 991903 Polymorphum gilvum 1373 0 species 991904 1 1 626 Rhodobacterales 80852 90 0 order 204455 1629 Rhodobacteraceae 80226 1 0 31989 family 89 0 360528 genus 2 16 1898 Pelagibaca 1 1 0 1250539 species Pelagibaca abyssi 1882 2 0 58840 no rank 1984 Rhodobacteraceae bacterium 739 0 species 1904441 1 1245 Rhodobacteraceae bacterium QY30 0 2033435 species 1 546 1 0 genus 1759396 1 0 2622455 no rank 546 1 0 1920883 species 546 Marivivens sp. JLT3646 3638 2 0 263377 genus 1 0 no rank 2640570 1611 species 1792508 0 1 1611 Yangia sp. CCB-MM3 Thiobacimonas profunda 2027 0 1229727 species 1 5 0 1060 genus 1 97 7502 Rhodobacter 1061 species 0 1 1336 Rhodobacter capsulatus 1 0 species 1063 3733 Rhodobacter sphaeroides 196779 no rank 0 2 2336 1 species 1850250 0 Rhodobacter sp. LPB0142 992 Rhodobacter sp. CZR27 1344 0 2033869 species 1 Jannaschia 1220 12 1 188905 genus 0 2 1 no rank 2645469 0 1208 1208 Jannaschia sp. CCS1 1 0 species 290400 0 genus 1097466 2 3 Defluviimonas 1345 1 0 species 1335048 1 1342 Defluviimonas alba 2284 Sulfitobacter 11 1 60136 genus 0 3 1 0 species 1402135 985 Sulfitobacter pseudonitzschiae 1288 0 no rank 196795 1 1288 Sulfitobacter sp. AM1-D1 species 1917485 0 1 4 0 53945 genus 1 12 1921 Octadecabacter Octadecabacter temperatus 606 1 0 species 1458307 708 Octadecabacter antarcticus 0 1217908 species 1 species 53946 0 1 Octadecabacter arcticus 595 genus 245186 0 1 5 Loktanella 1 0 genus 1649279 1043 1043 Ruegeria mobilis 0 species 379347 1 40 2472 Pannonibacter 1 0 genus 227873 2 Pannonibacter phragmitetus 2432 1 0 species 121719 1 Thioclava 1058 20 2 285107 genus 0 0 1915078 species 1 1038 Thioclava nitratireducens 0 159345 genus 1 885 885 Roseibacterium elongatum 1 species 159346 0 1 0 genus 309512 1327 1327 Dinoroseobacter shibae 1 215813 species 0 3 0 97050 genus 1 23 2223 Ruegeria 1 89184 species 0 Ruegeria pomeroyi 1338 862 0 2625375 no rank 1 Ruegeria sp. TM1040 862 0 292414 species 1 0 58842 genus 2 6 1749 Sagittula 1 1743 2624628 no rank 0 1 1 species 2009329 0 1743 Sagittula sp. P11 Labrenzia 4290 109 1 478070 genus 0 4 187304 species 0 1 1396 Labrenzia aggregata 0 2648686 no rank 2 2785 1 species 1674922 0 1574 Labrenzia sp. CP4 0 species 2021862 1 Labrenzia sp. VG12 1211 112 Phaeobacter 7552 1 0 genus 302485 5 1 1844006 species 0 Phaeobacter porticola 648 Phaeobacter inhibens 2660 221822 species 0 1 1799 Phaeobacter piscinae 1 1580596 species 0 1 60890 species 0 2333 Phaeobacter gallaeciensis 1152 Roseobacter 15 1 genus 2433 0 3 597 Roseobacter litoralis species 42443 0 1 540 Roseobacter denitrificans species 2434 0 1 0 genus 74032 2 1 1035 Antarctobacter 1 1 74033 species 0 Antarctobacter heliothermus 1034 1 1469 Leisingera 1 0 191028 genus 2 Leisingera methylohalidivorans 1468 1 species 133924 0 genus 367771 0 2 Marinovum 1537 14 1 1 0 42444 species Marinovum algicola 1523 Rhodovulum 4121 79 1 genus 34008 0 4 2 0 2631432 no rank 2090 0 1564506 species 1 Rhodovulum sp. P5 982 1 0 species 308754 Rhodovulum sp. MB263 1108 1 0 species 35806 1952 Rhodovulum sulfidophilum 0 299261 genus 2 1 Tateyamaria 948 1 947 Tateyamaria omphalii species 299262 0 1 2177 Ketogulonicigenium 15 1 92944 genus 0 3 1 0 species 92947 Ketogulonicigenium robustum 1122 0 92945 species 1 Ketogulonicigenium vulgare 1040 0 2211641 genus 1 1068 1068 Loktanella vestfoldensis species 245188 0 1 1 199 12414 Paracoccus 9 0 genus 265 1067 1 0 no rank 246570 0 1529068 species 1 Paracoccus sp. BM15 1067 Paracoccus aminovorans 1508 0 34004 species 1 Paracoccus yeei 2092 147645 species 0 1 Paracoccus zhejiangensis 1662 0 species 1077935 1 1111 Paracoccus contaminans 1 1945662 species 0 1 0 34003 species 1363 Paracoccus aminophilus 0 species 266 1 2153 Paracoccus denitrificans species 2065379 0 1 1259 Paracoccus sp. CBA4604 0 74030 genus 2 6 788 Roseovarius 1 782 Roseovarius mucosus 1 0 215743 species 0 genus 119541 1 815 1 0 species 441209 815 Rhodobaca barguzinensis 2 0 genus 1579315 1 5 370 Halocynthiibacter 1 species 1579316 0 Halocynthiibacter arcticus 365 5 0 genus 875170 1 37 4342 Celeribacter 1 species 1208324 0 Celeribacter indicus 1440 Celeribacter ethanolicus 1149 1 1758178 species 0 Celeribacter manganoxidans 1216 1 species 1411902 0 1 1397108 species 0 Celeribacter marinus 500 1 Confluentimicrobium 1135 13 2 1609958 genus 0 1 2643318 no rank 0 1122 1 0 species 1609966 Confluentimicrobium sp. EMB200-NS6 1122 genus 436357 0 1 16 Thalassococcus Planktomarina 268 5 1 1284657 genus 0 2 1 0 1284658 species 263 Planktomarina temperata 0 1191478 order 4 6 769 Magnetococcales 1 3 0 1191479 family 1 1 Magnetococcaceae 763 12 762 Magnetococcus 1 0 162171 genus 2 Magnetococcus marinus 750 0 1124597 species 1 907 2 0 2800059 order 2800061 family 0 2 907 1 7 Maricaulis 907 2 0 74317 genus 900 Maricaulis maris 1 0 74318 species 5067 class 1553900 0 9 1 2 1579 Bacteriovoracales 4 0 order 2024979 903 1 1652132 family 0 903 0 1652133 genus 1 1 0 97084 species Halobacteriovorax marinus 903 674 0 family 263369 2 146784 genus 0 2 Bacteriovorax 674 2 1 species 960 0 1 672 Bacteriovorax stolpii 0 213481 order 5 47 Bdellovibrionales 3488 1 4 0 213483 family 1 21 Bdellovibrionaceae 3441 958 genus 0 3 3420 Bdellovibrio 24 1 525 Bdellovibrio exovorus 0 453816 species 1 Bdellovibrio bacteriovorus 2871 1 959 species 0 1 2069 815529 Gammaproteobacteria 891 0 1236 class 31 Immundisolibacterales 1595 1 0 order 1934945 4 1934946 family 0 3 Immundisolibacteraceae 1564 38 1 0 1934947 genus 2 14 1526 Immundisolibacter 1 Immundisolibacter cernigliae 1512 0 species 1810504 1 36 order 72273 0 1 17015 Thiotrichales 6 1 889 Thiotrichaceae 6 5 135617 family 0 0 40751 genus 2 3 Thioploca 354 1 1 0 species 40754 351 Thioploca ingrica 2 529 Beggiatoa 1 0 1021 genus 2 527 Beggiatoa leptomitoformis 0 species 288004 1 Francisellaceae 10696 9 1 family 34064 0 15 1 2 Allofrancisella 564 2 0 genus 1869285 562 Allofrancisella guangzhouensis 0 594679 species 1 262 genus 0 12 10123 Francisella 130 1 1075 no rank 2610885 0 2 686 Francisella sp. FSC1006 1 species 1547445 0 Francisella sp. MA067296 389 1 species 475375 0 554 Francisella persica 954 species 0 1 1 species 549298 0 Francisella halioticida 543 species 1542390 0 1 835 Francisella sp. CA97-1460 0 622488 species 1 523 Francisella hispaniensis 0 573569 species 1 Francisella sp. TX077308 570 1 573570 species 0 796 Francisella sp. TX077310 1 263 species 0 Francisella tularensis 2070 1 0 657445 species 1127 Francisella noatunensis 1 species 28110 0 1900 Francisella philomiragia family 135616 0 15 5424 Piscirickettsiaceae 14 1 1 8 Thiomicrospira 897 3 0 genus 933 1 0 species 92245 Thiomicrospira aerophila 651 Thiomicrospira cyclica 238 1 147268 species 0 1 1 844 Piscirickettsia 2 0 1237 genus 843 Piscirickettsia salmonis species 1238 0 1 Methylophaga 2029 40 1 genus 40222 0 3 754477 species 0 1 1011 Methylophaga frappieri 978 Methylophaga nitratireducenticrescens 0 species 754476 1 34067 genus 0 4 1215 Cycloclasticus 4 1 1329899 species 0 1 422 Cycloclasticus zancles 2 0 no rank 2621467 789 419 Cycloclasticus sp. PY97N 1 728003 species 0 0 species 385025 1 370 Cycloclasticus sp. P1 1 Hydrogenovibrio 425 8 2 genus 28884 0 Hydrogenovibrio crunogenus 417 species 39765 0 1 62 Cellvibrionales 12961 1 0 1706369 order 28 4 family 1706372 0 1 1794 Halieaceae 9 3 0 genus 1217416 1 52 1785 Halioglobus 0 species 930805 1 Halioglobus japonicus 946 787 Halioglobus pacificus 1 930806 species 0 0 family 1706371 11 69 Cellvibrionaceae 5872 1 11 Simiduia 1203 1 0 genus 447467 2 1192 Simiduia agarivorans 0 species 447471 1 764 1 genus 316625 0 764 Saccharophagus degradans 1 0 86304 species 2 0 2425 genus 1 7 Teredinibacter 536 Teredinibacter turnerae 529 0 2426 species 1 0 genus 10 4 47 2546 Cellvibrio 1 1526 2 no rank 2624793 0 963 Cellvibrio sp. PSBB006 0 1987723 species 1 Cellvibrio sp. PSBB023 563 species 1945512 0 1 973 Cellvibrio japonicus 1 155077 species 0 754 2036021 genus 0 1 Agarilytica rhodophyticola 754 1 0 species 1737490 7 0 1706375 family 1 21 Spongiibacteraceae 1919 1 466 Spongiibacter 4 2 630749 genus 0 462 no rank 2631504 0 1 462 Spongiibacter sp. IMCC21906 1 0 species 1620392 67 Oceanicoccus 971 1 0 1084558 genus 2 0 species 716816 1 Oceanicoccus sagamiensis 904 6 Zhongshania 461 1 0 genus 1434050 2 1470434 species 0 1 455 Zhongshania aliphaticivorans 1 Microbulbiferaceae 3314 45 5 1706373 family 0 3269 Microbulbifer 58 1 48073 genus 0 4 1275 Microbulbifer agarilyticus 0 260552 species 1 Microbulbifer aggregans 1054 1 species 1769779 0 1 252514 species 0 882 Microbulbifer thermotolerans 1 10 Nevskiales 948 4 0 1775403 order Sinobacteraceae 4 0 568386 family 1 934 0 2689614 family 2 1 934 Steroidobacter 9 2 469322 genus 0 Steroidobacter denitrificans 925 1 0 species 465721 0 no rank 33811 2 2300 1 0 83406 species gamma proteobacterium HdN1 704 endosymbiont of unidentified scaly snail isolate Monju 1596 1 0 1248727 species 51 135613 order 0 1 Chromatiales 31310 540 1839 0 no rank 451214 2 1 54 Thiohalobacter 1839 2 0 genus 1273155 1785 Thiohalobacter thiocyanaticus species 585455 0 1 4 Woeseiaceae 518 1 0 1738654 family 3 2 genus 1738655 0 1 Woeseia 514 3 511 Woeseia oceani 1548547 species 0 1 1610 2 0 family 449719 2 0 437504 genus 1 8 1610 Granulosicoccus 0 437505 species 1 1602 Granulosicoccus antarcticus 1676141 family 0 3 Wenzhouxiangellaceae 1277 19 1 2 1676142 genus 0 1 1258 Wenzhouxiangella 20 Wenzhouxiangella marina 1238 1 0 species 1579979 11 Halothiobacillaceae 1706 1 0 family 255526 4 0 109262 genus 3 22 Halothiobacillus 1695 1 988 1 0 no rank 2636392 1 0 species 1860122 Halothiobacillus sp. LS2 988 685 Halothiobacillus neapolitanus 1 species 927 0 72276 family 0 18 Ectothiorhodospiraceae 12290 201 1 1 1315 Ectothiorhodospira 3 2 1051 genus 0 1312 1 0 2684909 no rank 1 0 species 1442136 Ectothiorhodospira sp. BSL-9 1312 2 genus 1765964 0 1 805 Acidihalobacter 11 0 160660 species 1 794 Acidihalobacter prosperus 6 genus 106633 0 1 6515 Thioalkalivibrio 178 Thioalkalivibrio paradoxus 1004 1 species 108010 0 species 1033854 0 1 1991 Thioalkalivibrio sulfidiphilus 1104 Thioalkalivibrio nitratireducens 1 186931 species 0 989 1 0 no rank 2621013 989 Thioalkalivibrio sp. K90mix 396595 species 0 1 0 106634 species 1 1249 Thioalkalivibrio versutus 2 0 genus 133193 1 19 1204 Alkalilimnicola Alkalilimnicola ehrlichii 1185 351052 species 0 1 85108 genus 0 2 Halorhodospira 1170 6 1 1 0 1053 species 1164 Halorhodospira halophila 1 Spiribacter 1080 11 3 1335745 genus 0 1335757 species 0 1 Spiribacter curvatus 660 409 Spiribacter salinus 1 1335746 species 0 0 family 1046 18 137 11530 Chromatiaceae 1 2 156885 genus 0 1 Thioflavicoccus 1175 22 1 0 80679 species Thioflavicoccus mobilis 1153 33 3185 Thiodictyon 1 0 53392 genus 2 species 1166950 0 1 3152 Candidatus Thiodictyon syntrophicum 1 Candidatus Nitrosoglobus 222 1 2 genus 1980513 0 221 Candidatus Nitrosoglobus terrae 1 1630141 species 0 1060 0 no rank 82569 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1060 0 1978339 species 1 1 4 Nitrosococcus 939 4 0 1227 genus 133539 species 0 1 334 Nitrosococcus halophilus 1 0 species 1229 357 Nitrosococcus oceani 244 Nitrosococcus watsonii 0 species 473531 1 0 85072 genus 2 20 Allochromatium 1822 1 Allochromatium vinosum 1802 species 1049 0 1 0 genus 13724 2 28 1287 Thiocystis 1 Thiocystis violascens 1259 1 species 73141 0 1 Marichromatium 1703 27 2 85076 genus 0 Marichromatium purpuratum 1676 0 species 37487 1 102 Acidiferrobacterales 2702 1 0 1692040 order 6 5 1692041 family 0 1 Acidiferrobacteraceae 2600 46 Sulfurifustis 1230 33 1 genus 1692042 0 2 1 species 1675686 0 Sulfurifustis variabilis 1197 2 0 1744881 genus 1 16 Sulfuricaulis 1324 1 0 species 1620215 Sulfuricaulis limicola 1308 1 Pseudomonadales 182598 1081 129 order 72274 0 135621 family 0 86 Pseudomonadaceae 155816 937 1 80 0 286 genus 1 5639 150095 Pseudomonas 1853130 species 0 1 892 Pseudomonas silesiensis 2078 Pseudomonas brassicacearum 1 species 930166 0 20103 136843 species group 0 9 0 76761 species 1 Pseudomonas veronii 806 1 0 species 47879 1055 Pseudomonas corrugata 380021 species 0 1 1806 Pseudomonas protegens 0 species 200451 1 941 Pseudomonas poae Pseudomonas fluorescens 10643 0 species 294 1 Pseudomonas mandelii 1081 0 species 75612 1 Pseudomonas trivialis 1134 1 200450 species 0 Pseudomonas orientalis 965 0 species 76758 1 Pseudomonas azotoformans 1672 47878 species 0 1 827 Pseudomonas antarctica 219572 species 0 1 species group 136842 0 2 7306 1 species 587753 0 5639 Pseudomonas chlororaphis Pseudomonas fragi 1667 296 species 0 1 Pseudomonas frederiksbergensis 2211 0 104087 species 1 Pseudomonas alcaliphila 1225 species 101564 0 1 Pseudomonas rhizosphaerae 808 1 0 216142 species species group 136841 0 6 20729 1 0 species subgroup 1232139 1813 1149133 species 0 1 Pseudomonas furukawaii 1813 Pseudomonas aeruginosa 6614 1 0 287 species 1 0 species 300 5331 Pseudomonas mendocina 1 0 species 43263 Pseudomonas alcaligenes 1823 1 0 53412 species 1629 Pseudomonas resinovorans Pseudomonas citronellolis 3519 0 species 53408 1 8 0 species group 136849 13450 Pseudomonas cichorii 1002 36746 species 0 1 Pseudomonas viridiflava 1060 1 0 33069 species 0 species 46257 1 880 Pseudomonas avellanae 2537 2 species subgroup 251698 0 1 0 47877 species Pseudomonas amygdali 1329 1208 Pseudomonas savastanoi 0 29438 species 1 0 species subgroup 251695 1 5771 0 317 species 1 Pseudomonas syringae 5771 0 251701 species 1 Pseudomonas syringae group genomosp. 3 1666 0 no rank 2775504 1 534 1 1206777 species 0 534 Pseudomonas sp. Lz4W 0 species group 136845 6 22337 1 species 78327 0 2110 Pseudomonas mosselii 0 species 47880 1 Pseudomonas fulva 2712 1355 Pseudomonas oryzihabitans 1 0 47885 species 814 Pseudomonas plecoglossicida 1 70775 species 0 0 303 species 1 Pseudomonas putida 12677 Pseudomonas monteilii 2669 0 species 76759 1 30 no rank 196821 0 30608 0 species 1898684 1 Pseudomonas sp. LPH1 1110 1 2083055 species 0 Pseudomonas sp. LH1G9 1025 1 0 species 1534110 Pseudomonas sp. DR 5-09 951 1013 Pseudomonas sp. XWY-1 0 2069256 species 1 1166 Pseudomonas sp. StFLB209 1 species 1028989 0 Pseudomonas sp. LG1D9 696 1 0 2083054 species 1413 Pseudomonas sp. St29 1 species 1500687 0 1 2067572 species 0 917 Pseudomonas sp. NC02 Pseudomonas sp. GR 6-02 698 1 1659194 species 0 Pseudomonas sp. MRSN12121 1192 species 1611770 0 1 0 1856685 species 1 1368 Pseudomonas sp. TCU-HL1 1626 Pseudomonas sp. ATCC 13867 1 0 species 1294143 1 2049589 species 0 620 Pseudomonas sp. HLS-6 1 1930532 species 0 Pseudomonas sp. CC6-YY-74 860 Pseudomonas sp. SWI6 886 1 2083051 species 0 0 1827300 species 1 646 Pseudomonas sp. MYb193 1 1259844 species 0 979 Pseudomonas sp. FGI182 1 1338689 species 0 1034 Pseudomonas sp. JY-Q 0 1207075 species 1 853 Pseudomonas sp. UW4 1981174 species 0 1 537 Pseudomonas sp. M30-35 0 1283291 species 1 Pseudomonas sp. URMO17WK12:I11 1747 2083053 species 0 1 818 Pseudomonas sp. SWI44 1 2083052 species 0 Pseudomonas sp. SWI36 1078 1 0 species 1931241 Pseudomonas sp. S-6-2 1146 1492 Pseudomonas sp. Os17 1 0 1500686 species 0 1636610 species 1 964 Pseudomonas sp. PONIH3 1037 Pseudomonas sp. VLB120 1 species 69328 0 747 Pseudomonas sp. TKP 1 species 1415630 0 1 1649877 species 0 Pseudomonas sp. CCOS 191 1077 Pseudomonas sp. FDAARGOS_380 912 1 2018067 species 0 1583341 species 0 1 731 Pseudomonas cerasi 893 Pseudomonas lurida 1 0 species 244566 species 198620 0 1 Pseudomonas koreensis 1638 0 species group 136846 2 9365 8410 species subgroup 578833 0 1 1 316 species 0 Pseudomonas stutzeri 8410 1 species 74829 0 Pseudomonas balearica 955 0 312306 species 1 1221 Pseudomonas entomophila Pseudomonas cremoricolorata 927 1 0 157783 species 1 237610 species 0 1902 Pseudomonas psychrotolerans 0 species 65741 1 1728 Pseudomonas knackmussii 1878 Pseudomonas parafulva 1 species 157782 0 0 1788301 species 1 Pseudomonas versuta 726 873 Pseudomonas alkylphenolica 0 species 237609 1 1849530 genus 0 2 Oblitimonas 506 1 1 Oblitimonas alkaliphila 505 species 1697053 0 1 3 351 subfamily 0 4278 1 Azotobacter 4278 104 3 genus 352 0 2679 Azotobacter chroococcum 1 species 353 0 1495 Azotobacter vinelandii species 354 0 1 1 106 Moraxellaceae 25701 42 0 468 family 291 Acinetobacter 18919 1 0 genus 469 25 Acinetobacter schindleri 739 1 0 species 108981 7605 species group 909768 0 5 0 48296 species 1 Acinetobacter pittii 2113 0 1785128 species 1 Acinetobacter lactucae 506 1 0 106654 species Acinetobacter nosocomialis 692 species 471 0 1 1544 Acinetobacter calcoaceticus Acinetobacter baumannii 2750 0 470 species 1 681 Acinetobacter junii 0 species 40215 1 7 0 no rank 196816 3563 Acinetobacter sp. TTH0-4 505 1646498 species 0 1 Acinetobacter sp. TGL-Y2 581 1 1407071 species 0 species 2079596 0 1 Acinetobacter sp. SWBY1 422 406 Acinetobacter sp. ACNIH2 0 1758189 species 1 1 0 species 1636603 570 Acinetobacter sp. ACNIH1 1 0 1808001 species Acinetobacter sp. LoGeW2-3 513 566 Acinetobacter sp. NCu2D-2 0 species 1608473 1 Acinetobacter johnsonii 631 1 0 species 40214 1 0 487316 species Acinetobacter soli 446 589 Acinetobacter radioresistens 1 species 40216 0 Acinetobacter haemolyticus 647 1 0 species 29430 1 106648 species 0 Acinetobacter bereziniae 670 626 1 202950 species 0 626 Acinetobacter sp. ADP1 1 strain 62977 0 0 species 1324350 1 760 Acinetobacter equi 1 0 species 756892 528 Acinetobacter indicus 0 species 1148157 1 704 Acinetobacter oleivorans 1 1789224 species 0 439 Acinetobacter larvae 1 2841 Moraxella 30 5 475 genus 0 1 0 34062 species 1160 Moraxella osloensis 0 29433 species 1 Moraxella ovis 425 1 0 species 386891 Moraxella bovoculi 836 390 Moraxella catarrhalis 1 species 480 0 97 3835 Psychrobacter 1 0 genus 497 11 2331 6 0 no rank 196806 1 species 1699622 0 Psychrobacter sp. P2G3 312 250 Psychrobacter sp. G species 571800 0 1 species 1720344 0 1 582 Psychrobacter sp. AntiMn-1 1 0 species 1699624 332 Psychrobacter sp. P11G5 0 1028416 species 1 Psychrobacter sp. DAB_AL43B 461 1 0 species 349106 Psychrobacter sp. PRwf-1 394 444 Psychrobacter arcticus 0 334543 species 1 260 Psychrobacter cryohalolentis 1 0 330922 species 1 species 45610 0 Psychrobacter urativorans 366 337 Psychrobacter alimentarius 1 0 species 261164 order 135615 0 3 Cardiobacteriales 351 19 1 332 868 family 0 2 1 332 Dichelobacter 5 2 869 genus 0 0 870 species 1 327 Dichelobacter nodosus 4 1240482 order 0 1464 1464 Orbaceae 17 1 family 1240483 0 4 1 0 genus 1335631 647 Frischella perrara 647 0 species 1267021 1 2 800 Gilliamella 1 0 genus 1193503 2 1 0 1196095 species Gilliamella apicola 798 6559 Methylococcales 44 1 135618 order 0 13 1 97 6515 Methylococcaceae 12 0 family 403 0 genus 762296 2 2 Methylovulum 600 1 598 Methylovulum psychrotolerans 1 0 1704499 species 2 39773 genus 0 1 Methylomicrobium 545 4 541 Methylomicrobium alcaliphilum 1 271065 species 0 0 genus 416 5 47 4036 Methylomonas 1 808 Methylomonas methanica 1 421 species 0 1156 Methylomonas koyamae 702114 species 0 1 species 1538553 0 1 801 Methylomonas denitrificans 1224 1 2608980 no rank 0 species 1727196 0 1 1224 Methylomonas sp. DH-1 1 9 Methylococcus 1237 2 0 413 genus 1228 Methylococcus capsulatus 1 414 species 0 118969 order 0 21 8921 Legionellales 2 1 1 Legionellaceae 7238 30 15 444 family 0 0 445 genus 12 48 Legionella 6809 1 Legionella sainthelensi 504 1 28087 species 0 Legionella endosymbiont of Polyplax serrata 107 1 2005262 species 0 2214 Legionella pneumophila 1 446 species 0 Legionella clemsonensis 376 species 1867846 0 1 0 45067 species 1 393 Legionella lansingensis Legionella spiritensis 669 species 452 0 1 Legionella hackeliae 396 1 species 449 0 540 Legionella longbeachae 450 species 0 1 0 29423 species 1 628 Legionella oakridgensis 1 0 96230 species 420 Legionella fallonii 1 0 66969 species Legionella waltersii 514 2 465 genus 0 1 399 Tatlockia 1 0 451 species 1 398 Tatlockia micdadei 1 5 Coxiellaceae 1681 5 0 118968 family 0 134284 no rank 1 193 0 1592897 species 1 193 Coxiella-like endosymbiont 1 16 1483 Coxiella 3 0 genus 776 1 species 777 0 1243 Coxiella burnetii 0 2676648 no rank 1 224 species 325775 0 1 Coxiella endosymbiont of Amblyomma americanum 224 91347 order 0 243 269864 Enterobacterales 1399 1 1628 Enterobacteriaceae 150790 1 0 543 family 117 3 160674 genus 0 1 Raoultella 4384 39 Raoultella ornithinolytica 3078 1 54291 species 0 0 species 575 1 1267 Raoultella planticola 1015 579 genus 0 1 0 species 61648 1 1015 Kluyvera intermedia 381 1 0 401618 genus Candidatus Riesia pediculicola 381 1 0 species 401619 1 13 3150 Cedecea 2 0 genus 158483 3137 Cedecea neteri 1 0 158822 species Pluralibacter 4445 28 1 1330546 genus 0 3 [Enterobacter] lignolyticus 1536 1 0 species 1334193 Pluralibacter gergoviae 2881 1 0 species 61647 30 Shimwellia 1267 1 0 1335483 genus 2 1237 Shimwellia blattae 563 species 0 1 4 620 genus 0 1 2140 Shigella 149 Shigella flexneri 554 0 623 species 1 1 2629414 no rank 0 608 1 1813821 species 0 Shigella sp. PAMC 28760 608 Shigella dysenteriae 829 622 species 0 1 8 0 genus 413496 1 207 8510 Cronobacter 0 species 28141 1 Cronobacter sakazakii 1809 1 species 413502 0 Cronobacter turicensis 1001 1601 Cronobacter muytjensii 1 species 413501 0 Cronobacter condimenti 968 1163710 species 0 1 1 0 species 413497 Cronobacter dublinensis 1065 1 535744 species 0 1001 Cronobacter universalis Cronobacter malonaticus 858 1 0 species 413503 1 17 7376 Salmonella 3 0 genus 590 1 0 28901 species Salmonella enterica 6223 Salmonella bongori 1136 54736 species 0 1 0 genus 570 10 1037 Klebsiella 35466 1 species 571 0 1 Klebsiella oxytoca 5104 Klebsiella quasivariicola 1573 2026240 species 0 1 2608929 no rank 0 2 2870 1543 Klebsiella sp. LTGPAF-6F 1 species 1905288 0 0 species 1934254 1 1327 Klebsiella sp. M5al 2713 Klebsiella aerogenes 0 548 species 1 Klebsiella variicola 3699 1 0 species 244366 0 species 573 1 13916 Klebsiella pneumoniae species 1463165 0 1 Klebsiella quasipneumoniae 1803 Klebsiella michiganensis 2751 0 species 1134687 1 5 36866 no rank 0 5404 1 891974 species 0 1229 Plautia stali symbiont 1150 Enterobacteriaceae bacterium strain FGI 57 1 0 species 693444 1 2066051 species 0 986 Enterobacteriaceae bacterium ENNIH1 species 1920109 0 1 Enterobacteriaceae bacterium ENNIH2 962 1 0 species 1920128 1077 Enterobacteriaceae bacterium ENNIH3 0 genus 561 5 125 Escherichia 13839 1 Escherichia coli 11086 1 562 species 0 564 Escherichia marmotae 1 1499973 species 0 1 208962 species 0 Escherichia albertii 1378 Escherichia fergusonii 686 1 564 species 0 22 genus 547 0 1 Enterobacter 26661 1654 12 354276 species group 0 18305 1 0 299767 species Enterobacter ludwigii 758 1 0 species 69218 Enterobacter cancerogenus 856 Enterobacter cloacae 7279 1 550 species 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 590 species 1812935 0 1 3 0 2757714 no rank 2328 525 Enterobacter cloacae complex sp. ECNIH7 1 1915310 species 0 0 2077137 species 1 1045 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 0 2027919 species Enterobacter cloacae complex bacterium 758 3 158836 species 0 1 3426 Enterobacter hormaechei 2091 Enterobacter cloacae complex 'Hoffmann cluster III' 828 1 1812934 subspecies 0 subspecies 1296536 0 1 Enterobacter xiangfangensis 507 1 species 61645 0 Enterobacter asburiae 2401 667 Enterobacter kobei 1 208224 species 0 0 no rank 2608935 9 6702 1 0 399742 species Enterobacter sp. 638 938 Enterobacter sp. E20 409 1 0 species 1560339 1 0 species 1827481 Enterobacter sp. ODB01 728 1 0 species 1692238 905 Enterobacter sp. FY-07 1 0 1977566 species Enterobacter sp. Crenshaw 385 886 Enterobacter sp. R4-368 1 species 1166130 0 1 0 1914861 species 1217 Enterobacter sp. SA187 Enterobacter sp. CRENT-193 670 1 species 2051905 0 0 1868135 species 1 Enterobacter sp. HK169 564 1 Lelliottia 4147 30 4 genus 1330545 0 Lelliottia jeotgali 1091 species 1907578 0 1 species 61646 0 1 1821 Lelliottia amnigena Lelliottia nimipressuralis 1205 0 species 69220 1 1 genus 1048757 0 121 121 Candidatus Moranella endobia 1 1048758 species 0 4 0 genus 83654 1 130 Leclercia 3533 Leclercia adecarboxylata 1113 83655 species 0 1 2290 2627398 no rank 0 2 0 1920114 species 1 Leclercia sp. LSNIH1 1190 1 species 1920116 0 Leclercia sp. LSNIH3 1100 18584 Citrobacter 653 1 544 genus 0 14 1589 2 no rank 2644389 0 1 species 1920110 0 Citrobacter sp. CFNIH10 821 768 Citrobacter sp. FDAARGOS_156 0 1702170 species 1 species 67825 0 1 1103 Citrobacter rodentium 1505 Citrobacter koseri 1 species 545 0 9996 7 0 species group 1344959 810 Citrobacter freundii complex sp. CFNIH4 0 species 2077148 1 Citrobacter werkmanii 1702 1 0 67827 species 817 Citrobacter freundii complex sp. CFNIH2 species 2066049 0 1 1 0 546 species Citrobacter freundii 3658 1 species 57706 0 Citrobacter braakii 1576 0 species 2077147 1 729 Citrobacter freundii complex sp. CFNIH3 704 Citrobacter freundii complex sp. CFNIH9 1 0 2077149 species 1 0 35703 species Citrobacter amalonaticus 2744 1 0 67824 species 994 Citrobacter farmeri genus 1330547 0 5 5105 Kosakonia 72 1 1 0 208223 species Kosakonia cowanii 1593 1 species 497725 0 1024 Kosakonia oryzae 1231 Kosakonia sacchari 0 species 1158459 1 Kosakonia radicincitans 1185 0 species 283686 1 203 1 409304 genus 0 203 Candidatus Ishikawaella capsulata 1 species 168169 0 3431 18 no rank 191675 0 3431 18 0 clade 84563 209 1 clade 199891 0 secondary endosymbiont of Trabutina mannipara 209 0 species 1835721 1 146 0 1906660 genus 1 1778264 species 0 1 146 Candidatus Mikella endobia 4 0 clade 146507 664 secondary endosymbiont of Heteropsylla cubana 170 1 species 134287 0 12 173 Candidatus Hamiltonella 1 0 568987 genus 2 Candidatus Hamiltonella defensa 161 1 species 138072 0 0 species 1199245 1 321 secondary endosymbiont of Ctenarytaina eucalypti 1 genus 1906661 0 245 0 1070130 species 1 Candidatus Gullanella endobia 245 327 1 0 1682492 genus 1 0 species 1410383 327 Candidatus Tachikawaea gelatinosa 1 1906657 genus 0 202 202 Candidatus Doolittlea endobia 1 0 1778262 species 7 84564 clade 0 1407 7 genus 203804 0 1 1407 Candidatus Blochmannia 10 101534 species 0 1 225 Candidatus Blochmannia pennsylvanicus 711328 no rank 0 2 343 71 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 1505596 species 0 species 1505597 0 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 272 331 Candidatus Blochmannia floridanus 1 species 203907 0 1 0 251542 species Candidatus Blochmannia chromaiodes 175 251535 species 0 1 Candidatus Blochmannia vafer 323 2 0 1906659 genus 1 3 Candidatus Hoaglandella 231 Candidatus Hoaglandella endobia 228 species 1778263 0 1 27 0 family 1903409 1 99 25957 Erwiniaceae 551 genus 0 8 6246 Erwinia 254 1 Erwinia amylovora 744 1 0 species 552 1 species 1922217 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 167 1243 Erwinia gerundensis 1 species 1619313 0 1 species 338565 0 1096 Erwinia tasmaniensis Erwinia pyrifoliae 604 1 79967 species 0 0 species 182337 1 Erwinia billingiae 1533 0 2622719 no rank 1 605 species 215689 0 1 605 Erwinia sp. Ejp617 genus 53335 0 11 12558 Pantoea 553 1 758 Pantoea rwandensis 0 1076550 species 1 3 2630326 no rank 0 3617 Pantoea sp. PSNIH1 1202 1 0 species 1484158 1 1484157 species 0 Pantoea sp. PSNIH2 1416 999 Pantoea sp. At-9b 1 592316 species 0 1 species 470934 0 2168 Pantoea vagans 1 species 1235990 0 408 Candidatus Pantoea carbekii 1804 1 species group 1654067 0 1 549 species 0 Pantoea agglomerans 1804 831 Pantoea alhagi species 1891675 0 1 Pantoea stewartii 1001 1 0 species 66269 1 0 553 species 1418 Pantoea ananatis 1 51228 genus 0 548 0 51229 species 1 Wigglesworthia glossinidia 548 0 genus 82986 2 62 847 Tatumella 1 0 species 53336 1 785 Tatumella citrea 2882 2 0 genus 2100764 1523 Pantoea gaviniae 1 species 665914 0 1359 Pantoea calida 1 665913 species 0 2 2777 Buchnera 1 0 genus 32199 2 2775 Buchnera aphidicola 1 0 species 9 1222 0 451511 no rank 2 1222 Plesiomonas 40 1 genus 702 0 2 species 703 0 1 Plesiomonas shigelloides 1182 Morganellaceae 12267 66 1 1903414 family 0 21 1 Xenorhabdus 3009 24 6 626 genus 0 Xenorhabdus doucetiae 524 0 species 351671 1 1 species 628 0 Xenorhabdus nematophila 527 1 species 40577 0 Xenorhabdus poinarii 471 Xenorhabdus bovienii 930 0 species 40576 1 1 0 species 351679 Xenorhabdus hominickii 533 586 genus 0 4 Providencia 2324 14 1 842 Providencia stuartii 0 588 species 1 780 Providencia rettgeri 587 species 0 1 0 species 126385 1 Providencia alcalifaciens 688 Proteus 2238 23 1 583 genus 0 3 1 species 584 0 Proteus mirabilis 1446 769 Proteus vulgaris 1 0 585 species 266 1 genus 637 0 Arsenophonus symbiont of Lipoptena fortisetosa 266 1 0 species 634113 1 43 1947 Morganella 2 0 581 genus 0 582 species 1 Morganella morganii 1904 4 genus 29487 0 1 2417 Photorhabdus 19 Photorhabdus temperata 671 0 species 574560 1 1 0 29488 species Photorhabdus luminescens 681 0 species 291112 1 Photorhabdus asymbiotica 1046 1 49 Pectobacteriaceae 20613 20 0 family 1903410 1 295 8389 Dickeya 6 0 204037 genus species 204039 0 1 1042 Dickeya dianthicola 0 1778540 species 1 1318 Dickeya fangzhongdai Dickeya dadantii 1354 species 204038 0 1 1 0 204042 species 1962 Dickeya zeae 2418 Dickeya solani species 1089444 0 1 1 202 7268 Pectobacterium 6 0 genus 122277 1905730 species 0 1 Pectobacterium parmentieri 818 786 Pectobacterium atrosepticum 29471 species 0 1 Pectobacterium carotovorum 3259 1 0 554 species Pectobacterium polaris 1517 2042057 species 0 1 0 55208 species 1 Pectobacterium wasabiae 686 0 71655 genus 2 15 1168 Brenneria 1 1153 Brenneria goodwinii 0 1109412 species 1 1 127 3739 Sodalis 5 0 84565 genus Sodalis glossinidius 1125 0 species 63612 1 Sodalis praecaptivus 1248 1 0 species 1239307 1 0 species 1486991 1001 Candidatus Sodalis pierantonius 238 Sodalis endosymbiont of Henestaris halophilus 0 1929246 species 1 44304 Yersiniaceae 194 1 1903411 family 0 39 27705 Serratia 1335 1 genus 613 0 16 9534 8 0 2647522 no rank 0 1758196 species 1 Serratia sp. SSNIH1 1312 1 488142 species 0 1372 Serratia sp. SCBI 0 species 768493 1 Serratia sp. AS13 705 1 0 1327989 species 1654 Serratia sp. FS14 1 671990 species 0 1562 Serratia sp. FGI94 1360 Serratia sp. MYb239 0 species 2033438 1 863 Serratia sp. ATCC 39006 1 species 104623 0 706 Serratia sp. AS12 1 0 768490 species 0 28151 species 1 878 Serratia proteamaculans 82996 species 0 1 Serratia plymuthica 1971 1 0 47917 species Serratia fonticola 2613 Serratia liquefaciens 1223 1 species 614 0 1 species 61651 0 1811 Serratia ficaria Serratia rubidaea 1528 1 species 61652 0 1 species 615 0 6812 Serratia marcescens genus 1745211 0 2 Chania 1019 32 1 987 Chania multitudinisentens 0 1639108 species 1 11109 Yersinia 313 1 629 genus 0 13 29485 species 0 1 Yersinia rohdei 562 646 Yersinia kristensenii 28152 species 0 1 489 Yersinia aldovae 0 29483 species 1 2011 Yersinia frederiksenii 0 species 29484 1 Yersinia enterocolitica 2464 1 630 species 0 Yersinia aleksiciae 466 1 0 263819 species species 29486 0 1 717 Yersinia ruckeri 698 Yersinia intermedia 1 species 631 0 2066 3 1649845 species group 0 0 632 species 1 Yersinia pestis 574 856 Yersinia pseudotuberculosis 1 species 633 0 367190 species 0 1 Yersinia similis 636 677 2653513 no rank 0 1 677 Yersinia sp. FDAARGOS_228 1 0 species 1839800 genus 1565532 0 1 Rouxiella 22 4 34037 genus 0 1 3187 Rahnella 54 0 34038 species 1 Rahnella aquatilis 1013 0 2635087 no rank 2 2120 Rouxiella sp. ERMR1:05 1114 species 1805933 0 1 1006 Rahnella sp. Y9602 1 0 species 741091 1068 Gibbsiella 6 1 genus 929812 0 2 1 species 929813 0 1062 Gibbsiella quercinecans 1903412 family 0 14 12697 Hafniaceae 39 1 58 2162 Hafnia 1 0 genus 568 3 no rank 2621980 0 1 647 1848580 species 0 1 Hafnia sp. CBA7124 647 1457 Hafnia alvei 0 species 569 1 0 82982 genus 2 15 684 Obesumbacterium 1 1 0 82983 species Obesumbacterium proteus 669 genus 635 0 8 9812 Edwardsiella 521 1 2354 Edwardsiella tarda 1 636 species 0 920 Edwardsiella hoshinae 1 species 93378 0 0 1263550 species 1 1493 Edwardsiella piscicida 0 species 1821960 1 1032 Edwardsiella anguillarum Edwardsiella ictaluri 1060 1 species 67780 0 0 no rank 2676541 2 2432 1 0 1578828 species 1415 Edwardsiella sp. EA181011 1650654 species 0 1 Edwardsiella sp. LADL05-105 1017 615 family 1903416 0 2 615 Pragia 6 1 82984 genus 0 2 609 Pragia fontium 1 82985 species 0 29 order 135624 0 1 42664 Aeromonadales 233 1 353 42431 Aeromonadaceae 28 0 family 84642 0 genus 129577 2 47 Oceanimonas 1784 1 1737 1 2636315 no rank 0 1 0 species 511062 Oceanimonas sp. GK1 1737 0 43947 genus 2 9 Tolumonas 1058 1 0 species 43948 1 1049 Tolumonas auensis 2 1498 Oceanisphaera 1 0 225143 genus 3 1 1903694 species 0 261 Oceanisphaera sp. AMac2203 0 species 1416627 1 1235 Oceanisphaera profunda 642 genus 0 18 35278 Aeromonas 2285 1 10273 0 257493 no rank 8 1568 Aeromonas sp. ASNIH4 1 0 species 1636609 1 1636608 species 0 1344 Aeromonas sp. ASNIH3 Aeromonas sp. ASNIH1 1069 1 1636606 species 0 1 0 1636607 species Aeromonas sp. ASNIH2 911 1568 Aeromonas sp. CA23 1 species 2033032 0 Aeromonas sp. ASNIH5 1221 1 0 species 1758179 1 0 2033033 species 1438 Aeromonas sp. CU5 1920107 species 0 1 1154 Aeromonas sp. ASNIH7 Aeromonas rivipollensis 1327 1 species 948519 0 species 651 0 1 Aeromonas media 1546 558964 species 0 1 1703 Aeromonas aquatica 7405 Aeromonas hydrophila 1 0 644 species Aeromonas salmonicida 2482 1 0 645 species 1 0 654 species Aeromonas veronii 3972 Aeromonas caviae 1164 1 species 648 0 1609 Aeromonas dhakensis 1 0 196024 species Aeromonas schubertii 1512 species 652 0 1 2 genus 347533 0 1 Zobellella 2460 44 1 0 347534 species 2416 Zobellella denitrificans 44 order 135623 0 1 35299 Vibrionales 16 1 268 35283 Vibrionaceae 43 0 641 family 30 0 genus 662 1 443 28266 Vibrio 0 species 1435069 1 653 Vibrio tritonius species 212663 0 1 461 Vibrio tasmaniensis Vibrio qinghaiensis 412 1 0 2025808 species 1 0 species 55601 783 Vibrio anguillarum 1 0 52443 species 790 Vibrio tapetis Vibrio vulnificus 2244 0 species 672 1 1551 Vibrio coralliilyticus 190893 species 0 1 674 species 0 1 1318 Vibrio mimicus Vibrio cholerae 1487 1 species 666 0 species group 1891919 0 1 514 1 species 29498 0 Vibrio tubiashii 514 1 687 species 0 Vibrio gazogenes 860 Vibrio furnissii 810 29494 species 0 1 Vibrio nigripulchritudo 784 1 28173 species 0 461 Vibrio hyugaensis 1 species 1534743 0 0 676 species 1 1298 Vibrio fluvialis Vibrio breoganii 498 1 species 553239 0 no rank 2614977 0 2 1139 species 2014742 0 1 Vibrio sp. 2521-89 600 1116375 species 0 1 Vibrio sp. EJY3 539 10918 10 717610 species group 0 1833 Vibrio campbellii 1 0 species 680 Vibrio jasicida 457 1 0 766224 species species 696485 0 1 Vibrio owensii 614 Vibrio natriegens 1313 1 0 691 species 1 190895 species 0 525 Vibrio rotiferianus 1397 2 0 2315253 species subgroup Vibrio diabolicus 963 0 species 50719 1 434 Vibrio antiquarius 150340 species 0 1 1850 Vibrio parahaemolyticus 1 0 670 species species 663 0 1 Vibrio alginolyticus 1850 1 0 669 species Vibrio harveyi 1079 Vibrio scophthalmi 842 species 45658 0 1 586 Grimontia 3 1 genus 246861 0 2 1 0 species 673 Grimontia hollisae 583 464 Paraphotobacterium 3 1 genus 2042066 0 2 1 0 species 1755811 461 Paraphotobacterium marinum 4 0 511678 genus 1 36 Aliivibrio 2360 986 Aliivibrio fischeri 668 species 0 1 0 80852 species 1 Aliivibrio wodanis 779 Aliivibrio salmonicida 559 0 species 40269 1 1 3339 Photobacterium 19 4 genus 657 0 Photobacterium profundum 1145 1 74109 species 0 0 1295392 species 1 Photobacterium gaetbulicola 1165 1010 Photobacterium damselae 0 38293 species 1 1 23761 Pasteurellales 13 31 order 135625 0 family 712 0 30 23748 Pasteurellaceae 921 1 1 0 155493 genus 734 1 750 species 0 734 Gallibacterium anatis 724 genus 0 6 Haemophilus 7245 115 1 729 species 0 1 Haemophilus parainfluenzae 3071 1 0 249188 species 695 Haemophilus pittmaniae 720 [Haemophilus] ducreyi species 730 0 1 Haemophilus influenzae 2099 0 727 species 1 545 1 2609962 no rank 0 545 Haemophilus sp. oral taxon 036 0 species 712310 1 476528 genus 0 2 Bibersteinia 2182 3 1 species 47735 0 1 2179 Bibersteinia trehalosi 1 69 Aggregatibacter 2044 3 0 genus 416916 865 Aggregatibacter actinomycetemcomitans species 714 0 1 1 0 732 species 1110 Aggregatibacter aphrophilus 2443 Mannheimia 32 1 genus 75984 0 4 2645054 no rank 0 1 575 Mannheimia sp. USDA-ARS-USMARC-1261 575 1 1432056 species 0 Mannheimia varigena 863 0 85404 species 1 973 Mannheimia haemolytica 1 0 species 75985 713 genus 0 5 2894 Actinobacillus 47 1 618 Actinobacillus equuli 718 species 0 1 559 Actinobacillus succinogenes 1 67854 species 0 1 species 716 0 Actinobacillus suis 540 species 715 0 1 Actinobacillus pleuropneumoniae 1130 2 775 Basfia 1 0 genus 697331 2 773 [Mannheimia] succiniciproducens 0 157673 species 1 1397 1 0 2094023 genus 1 0 738 species Glaesserella parasuis 1397 1 6 843 Histophilus 2 0 214906 genus 1 0 species 731 837 Histophilus somni 0 genus 745 3 27 2270 Pasteurella 1 1548 Pasteurella multocida 747 species 0 1 695 Pasteurella dagmatis 1 754 species 0 299 58882 Alteromonadales 1 0 135622 order 106 0 267888 family 25 45 Pseudoalteromonadaceae 14387 1 1 Pseudoalteromonas 14342 228 24 53246 genus 0 1 0 species 176102 Pseudoalteromonas agarivorans 434 Pseudoalteromonas translucida 397 166935 species 0 1 722 Pseudoalteromonas luteoviolacea 0 species 43657 1 1 28109 species 0 462 Pseudoalteromonas nigrifaciens 493 Pseudoalteromonas arctica 0 species 394751 1 1 0 species 43662 486 Pseudoalteromonas piscicida Pseudoalteromonas tetraodonis 492 1 species 43659 0 0 species 28107 1 Pseudoalteromonas espejiana 664 562 Pseudoalteromonas rubra 1 0 species 43658 925 Pseudoalteromonas tunicata 314281 species 0 1 3046 5 no rank 194690 0 Pseudoalteromonas sp. SM9913 483 234831 species 0 1 572 Pseudoalteromonas sp. Bsw20308 1 species 283699 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 741 1 0 1720343 species 1 0 species 1514074 Pseudoalteromonas sp. NC201 525 1 1761891 species 0 Pseudoalteromonas sp. 13-15 725 Pseudoalteromonas issachenkonii 487 species 152297 0 1 1 species 1348114 0 849 Pseudoalteromonas piratica species 228 0 1 319 Pseudoalteromonas haloplanktis 509 Pseudoalteromonas phenolica 1 0 161398 species 1 247523 species 0 691 Pseudoalteromonas aliena 1 species 298657 0 936 Pseudoalteromonas spongiae 1 species 267375 0 Pseudoalteromonas marina 536 Pseudoalteromonas atlantica 1104 1 0 species 288 0 family 267892 3 2 Ferrimonadaceae 1576 1 Ferrimonas 1574 9 1 44011 genus 0 2 Ferrimonas balearica 1565 1 species 44012 0 107 Alteromonadaceae 20160 1 0 72275 family 30 10 genus 2742 0 1 10788 Marinobacter 184 0 1420916 species 1 Marinobacter similis 1041 1 species 1874317 0 1038 Marinobacter salinus 1 0 1033846 species Marinobacter adhaerens 1187 Marinobacter psychrophilus 497 species 330734 0 1 3406 0 83889 no rank 3 0 490759 species 1 704 Marinobacter sp. BSs20148 1493 Marinobacter sp. LQ44 1 0 1749259 species 1209 Marinobacter sp. CP1 1671721 species 0 1 1 0 2743 species 1961 Marinobacter hydrocarbonoclasticus 1 species 1420917 0 1474 Marinobacter salarius 5 614 Paraglaciecola 1 0 1621534 genus 2 1 0 species 326544 609 Paraglaciecola psychrophila 3 0 genus 89404 1 3 1094 Glaciecola 449 no rank 2618684 0 1 Glaciecola sp. 4H-3-7+YE-5 449 1 0 983545 species 642 Glaciecola nitratireducens 300231 species 0 1 37 Lacimicrobium 1171 1 0 genus 1751872 2 1 1526571 species 0 1134 Lacimicrobium alkaliphilum 89 5727 Alteromonas 1 0 genus 226 10 1 287094 species 0 420 Alteromonas addita Alteromonas naphthalenivorans 648 1 0 715451 species 706 Alteromonas stellipolaris 1 233316 species 0 0 2614992 no rank 3 1151 1 species 1917158 0 433 Alteromonas sp. RW2A1 318 Alteromonas sp. MB-3u-76 1 species 2058133 0 1 0 1777491 species 400 Alteromonas sp. Mac1 980 Alteromonas mediterranea 1 0 species 314275 1 0 species 28108 1270 Alteromonas macleodii species 589873 0 1 Alteromonas australica 463 261825 genus 0 2 659 Agarivorans 22 1 1 species 680279 0 Agarivorans gilvus 637 1 10 Idiomarinaceae 1489 6 0 267893 family 1 9 1479 Idiomarina 5 0 135575 genus 1 0 species 135577 506 Idiomarina loihiensis 2614829 no rank 0 2 704 1 2100422 species 0 Idiomarina sp. OT37-5b 426 1 0 2055892 species 278 Idiomarina sp. X4 Idiomarina piscisalsi 260 1096243 species 0 1 5 Colwelliaceae 3638 1 0 267889 family 9 7 Thalassotalea 663 1 0 genus 1518149 2 1763536 species 0 1 656 Thalassotalea crassostreae 14 2970 Colwellia 1 0 28228 genus 6 463 Colwellia beringensis 1 0 1967665 species 1 species 28229 0 833 Colwellia psychrerythraea 3 0 no rank 196834 1660 Colwellia sp. PAMC 21821 536 0 species 1816219 1 1 0 1816218 species Colwellia sp. PAMC 20917 645 1 0 species 58049 Colwellia sp. MT41 479 1 Shewanellaceae 15425 87 25 family 267890 0 321 Shewanella 15338 1 0 genus 22 24 484 Shewanella japonica 0 species 93973 1 Shewanella loihica 1079 species 359303 0 1 60217 species 0 1 657 Shewanella violacea Shewanella amazonensis 1052 1 0 species 60478 1 species 404011 0 589 Shewanella piezotolerans 271098 species 0 1 584 Shewanella halifaxensis 479 Shewanella bicestrii 1 2018305 species 0 977 Shewanella sediminis 1 0 271097 species 0 no rank 196818 6 2809 1 species 60480 0 351 Shewanella sp. MR-4 1 60481 species 0 Shewanella sp. MR-7 477 1 2029986 species 0 Shewanella sp. WE21 708 351745 species 0 1 Shewanella sp. W3-18-1 457 94122 species 0 1 Shewanella sp. ANA-3 446 Shewanella sp. Pdp11 370 0 2059264 species 1 514 Shewanella oneidensis 0 70863 species 1 488 Shewanella marisflavi species 260364 0 1 species 62322 0 1 1356 Shewanella baltica Shewanella pealeana 633 1 0 70864 species species 24 0 1 Shewanella putrefaciens 655 Shewanella psychrophila 738 1 225848 species 0 192073 species 0 1 Shewanella denitrificans 529 772 Shewanella woodyi 60961 species 0 1 species 56812 0 1 622 Shewanella frigidimarina 1 57 Psychromonadaceae 1157 4 0 267894 family 1 1100 Psychromonas 5 3 genus 67572 0 462 0 2614957 no rank 1 462 Psychromonas sp. CNPT3 0 species 314282 1 Psychromonas ingrahamii 633 1 357794 species 0 1 Moritellaceae 751 3 3 267891 family 0 1 7 748 Moritella 2 0 genus 58050 1 species 80854 0 741 Moritella viscosa 135619 order 0 69 40480 Oceanospirillales 527 1 1 Hahellaceae 1069 1 0 224379 family 3 2 0 genus 158481 1 4 1068 Hahella 1064 Hahella chejuensis species 158327 0 1 1 1 620 Oleiphilaceae 3 0 family 191033 2 genus 141450 0 1 619 Oleiphilus 9 1 0 species 141451 Oleiphilus messinensis 610 164 6474 Oceanospirillaceae 1 0 family 135620 12 986 1 0 genus 188907 species 188908 0 1 986 Oleispira antarctica 14 Marinobacterium 1706 1 0 48075 genus 2 0 species 1821621 1 1692 Marinobacterium aestuarii 2 genus 1537406 0 1 Bacterioplanes 728 11 1249553 species 0 1 717 Bacterioplanes sanyensis 2 0 genus 187492 1 3 753 Thalassolituus 750 Thalassolituus oleivorans 1 0 species 187493 28253 genus 0 4 Marinomonas 2137 10 1 0 species 936476 1 547 Marinomonas posidonica 1 196814 no rank 0 917 1 0 species 400668 Marinomonas sp. MWYL1 917 663 Marinomonas mediterranea 119864 species 0 1 45 Alcanivoracaceae 5977 1 0 224372 family 9 1 4811 Alcanivorax 88 6 genus 59753 0 411 1 0 2638842 no rank 1 0 species 1113728 Alcanivorax sp. NBRC 101098 411 Alcanivorax xenomutans 1297 1 0 species 1094342 1255 Alcanivorax pacificus 1 0 1306787 species 1 59754 species 0 381 Alcanivorax borkumensis 1379 Alcanivorax dieselolei 285091 species 0 1 11 Ketobacter 1121 1 0 genus 2025617 2 Ketobacter alkanivorans 1110 1 1917421 species 0 1 3 Saccharospirillaceae 1527 5 0 255527 family 4 Gynuella 959 1 0 1445504 genus 2 species 1445505 0 1 Gynuella sunshinyii 955 565 Reinekea 8 1 genus 230494 0 2 1 species 1336806 0 557 Reinekea forsetii family 1920240 0 6 Kangiellaceae 1391 25 1 1 1366 Kangiella 15 5 261963 genus 0 409 Kangiella koreensis 1 261964 species 0 Kangiella profundi 324 1 1561924 species 0 189 Kangiella geojedonensis 0 914150 species 1 429 Kangiella sediminilitoris 1 0 1144748 species 22895 Halomonadaceae 414 1 family 28256 0 30 1 834 Halotalea 8 2 genus 376488 0 826 Halotalea alkalilenta 1 0 species 376489 1 Halomonas 15346 378 15 2745 genus 0 960 Halomonas huangheensis 1 0 1178482 species 1 species 475662 0 2080 Halomonas beimenensis 0 species 1897729 1 1611 Halomonas aestuarii 7224 2609666 no rank 0 8 Halomonas sp. 'Soap Lake #6' 590 1949203 species 0 1 1 1610576 species 0 943 Halomonas sp. R57-5 1 0 2136172 species Halomonas sp. SF2003 1603 1 species 1883416 0 1557 Halomonas sp. 1513 590 Halomonas sp. 'Soap Lake #7' 0 species 1962264 1 1504981 species 0 1 824 Halomonas sp. KO116 Halomonas sp. GT 632 0 1971364 species 1 1 1118153 species 0 Halomonas sp. GFAJ-1 485 1146 Halomonas chromatireducens 1 507626 species 0 1 0 115561 species 1356 Halomonas hydrothermalis 0 species 213554 1 591 Halomonas campaniensis 404432 genus 0 2 1326 Salinicola 43 1 1283 Salinicola tamaricis 1 1771309 species 0 17 Kushneria 2099 1 0 504090 genus 3 Kushneria konosiri 1124 0 698828 species 1 Kushneria marisflavi 958 1 0 species 157779 0 no rank 114403 3 267 1495768 genus 0 1 96 Candidatus Evansia muelleri 96 0 species 1495769 1 11 genus 114185 0 1 11 Candidatus Carsonella ruddii 1 0 species 114186 160 1 genus 235572 0 160 Candidatus Portiera aleyrodidarum 1 0 species 91844 6 1514 Cobetia 1 0 genus 204286 2 28258 species 0 1 Cobetia marina 1508 0 42054 genus 2 13 Chromohalobacter 1095 1 1082 Chromohalobacter salexigens 1 0 species 158080 5428 13 no rank 118884 0 1 0 198346 clade 681 Candidatus Baumannia cicadellinicola 681 1 0 species 186490 3 clade 32036 0 956 226 1 0 1541743 genus Candidatus Ruthia magnifica 226 386487 species 0 1 Calyptogena okutanii thioautotrophic gill symbiont 423 species 410330 0 1 1 species 113267 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 307 2 genus 1524249 0 1 Pseudohongiella 776 7 1249552 species 0 1 769 Pseudohongiella spirulinae 3 genus 655184 0 1 925 Candidatus Thioglobus 6 0 species 1427364 1 Candidatus Thioglobus singularis 410 1 0 species 1705394 509 Candidatus Thioglobus autotrophicus 1 8 1078 Thiolapillus 2 0 genus 1608298 1070 Thiolapillus brandeum 1 0 species 1076588 2 0 genus 349742 1 12 1012 Sedimenticola 1 0 1543721 species Sedimenticola thiotaurini 1000 135614 order 0 54 Xanthomonadales 68358 938 1 14 0 family 1775411 1 154 Rhodanobacteraceae 12455 1 Frateuria 1091 20 2 70411 genus 0 1 0 81475 species Frateuria aurantia 1071 1742 Rhodanobacter 21 1 genus 75309 0 2 species 666685 0 1 Rhodanobacter denitrificans 1721 960 1 0 2233801 genus species 2021234 0 1 960 Xanthomonadales bacterium D13 33 1913 Dokdonella 1 0 genus 323413 2 Dokdonella koreensis 1880 1 323415 species 0 0 231454 genus 4 170 5361 Dyella 1 1 0 species 1379159 1555 Dyella jiangningensis Dyella japonica 1765 1 0 species 231455 1871 Dyella thiooxydans 445710 species 0 1 2 0 genus 242605 1 4 1234 Luteibacter Luteibacter rhizovicinus 1230 0 species 242606 1 54965 Xanthomonadaceae 673 1 32033 family 0 39 1 Xanthomonas 21489 1394 17 338 genus 0 1 0 56458 species 1615 Xanthomonas sacchari 1115 Xanthomonas hortorum species 56454 0 1 1 species 29447 0 Xanthomonas albilineans 735 1652 Xanthomonas oryzae 1 0 347 species 1 0 442694 species 996 Xanthomonas perforans species group 643453 0 2 3368 species 346 0 1 Xanthomonas citri 2470 species 366648 0 1 Xanthomonas fuscans 898 1 0 species 53413 Xanthomonas axonopodis 586 1 0 343 species Xanthomonas translucens 2036 0 339 species 1 3134 Xanthomonas campestris 790 Xanthomonas euvesicatoria 1 0 456327 species 0 56460 species 1 1084 Xanthomonas vesicatoria 868 Xanthomonas phaseoli 0 1985254 species 1 0 species 366650 1 Xanthomonas alfalfae 744 Xanthomonas vasicola 669 species 56459 0 1 703 Xanthomonas fragariae 48664 species 0 1 genus 83618 0 3 Pseudoxanthomonas 4265 58 1 2897 Pseudoxanthomonas suwonensis 1 species 314722 0 1310 Pseudoxanthomonas spadix 0 species 415229 1 genus 2370 0 2 1080 Xylella 5 1 Xylella fastidiosa 1075 1 0 species 2371 1 537 Stenotrophomonas 19368 9 0 40323 genus 1 216778 species 0 Stenotrophomonas rhizophila 1416 no rank 196198 0 4 4882 1127 Stenotrophomonas sp. KCTC 12332 1 0 species 1793721 1 1827305 species 0 1387 Stenotrophomonas sp. MYb57 Stenotrophomonas sp. WZN-1 1226 1 2005046 species 0 1 1904944 species 0 Stenotrophomonas sp. LM091 1142 Stenotrophomonas acidaminiphila 2409 1 128780 species 0 Stenotrophomonas nitritireducens 1169 species 83617 0 1 0 995085 species group 1 8955 8955 Stenotrophomonas maltophilia 0 species 40324 1 1 90 7062 Lysobacter 5 0 genus 68 species 262324 0 1 Lysobacter gummosus 1519 Lysobacter capsici 1802 1 species 435897 0 Lysobacter antibioticus 1952 1 0 84531 species 1699 Lysobacter enzymogenes 0 species 69 1 0 83614 genus 2 4 1028 Luteimonas 1 1024 Luteimonas sp. 100111 2006110 species 0 1 1 0 name 0 1 70245 Archaea 1 0 superkingdom 2157 286 7138 clade 1783275 0 54 0 51967 phylum 1 119 119 1 0 genus 498845 1 0 498846 species 119 Candidatus Korarchaeum cryptofilum 1789 15 651137 phylum 0 0 651142 no rank 3 475 0 genus 1825023 2 261 152 Candidatus Nitrosotenuis cloacae 0 species 1603555 1 Candidatus Nitrosotenuis sp. AQ6f 109 1 species 1846278 0 214 1 1593364 genus 0 1 1410606 species 0 Candidatus Nitrosopelagicus brevis 214 1 488 Nitrososphaeria 1 7 class 1643678 0 353 order 1033996 0 3 1033997 family 0 3 Nitrososphaeraceae 353 1 1 0 genus 497726 2 4 Nitrososphaera 352 1 0 species 1034015 1 Nitrososphaera viennensis 348 1 1 134 Candidatus Nitrosocaldales 3 0 order 1968909 2 0 1968910 family 1 2 Candidatus Nitrosocaldaceae 133 131 1 genus 498374 0 131 Candidatus Nitrosocaldus islandicus 1 0 2045011 species 1 4 826 Nitrosopumilales 5 0 31932 order 1 1 Nitrosopumilaceae 822 4 0 family 338190 494 2 genus 338191 0 1580092 species 0 1 Candidatus Nitrosopumilus adriaticus 309 Candidatus Nitrosopumilus sediminis 185 1 species 1229909 0 1 0 1993653 genus 327 Candidatus Nitrosomarinus catalina 327 1 0 1898749 species 5230 0 28889 phylum 38 38 class 183924 0 1 5230 Thermoprotei 3 2266 order 0 12 1184 Thermoproteales 2 1 0 family 2267 7 525 50 genus 76886 0 1 50 Caldivirga maquilingensis 1 0 species 76887 3 0 164450 genus 1 1 Vulcanisaeta 179 1 0 species 985052 82 Vulcanisaeta moutnovskia 1 164451 species 0 96 Vulcanisaeta distributa 0 2270 genus 2 264 Thermoproteus uzoniensis 183 1 0 184117 species 0 2271 species 1 81 Thermoproteus tenax 32 genus 2276 0 1 1 0 species 2277 32 Pyrobaculum islandicum 657 4 114378 family 0 657 4 2268 genus 0 223 Thermofilum adornatus species 1365176 0 1 Thermofilum pendens 78 1 2269 species 0 185 Thermofilum carboxyditrophus 1 0 1483572 species 1550241 species 0 1 171 Thermofilum uzonense 1 1 Desulfurococcales 1347 13 0 114380 order 9 family 2272 0 1 1023 Desulfurococcaceae 2 1 0 genus 54253 156 species 54254 0 1 156 Thermosphaera aggregans 222 2 0 genus 54258 0 species 160233 1 Ignicoccus hospitalis 181 41 Ignicoccus islandicus 1 species 54259 0 350 2 0 genus 2279 Staphylothermus hellenicus 170 1 0 species 84599 Staphylothermus marinus 180 1 0 2280 species 2 genus 2273 0 177 Desulfurococcus mucosus 86 0 2275 species 1 Desulfurococcus amylolyticus 91 1 94694 species 0 116 1 genus 477695 0 Thermogladius calderae 116 1 0 1200300 species 323 3 0 family 2307 54251 genus 0 1 63 0 54252 species 1 63 Pyrolobus fumarii 1 2308 genus 0 137 species 1273541 0 1 Pyrodictium delaneyi 137 1 genus 54247 0 123 1 0 54248 species Hyperthermus butylicus 123 871006 order 0 4 Acidilobales 387 1 1 0 255472 family 2 260 0 genus 200414 2 1 260 Caldisphaera 1 Caldisphaera lagunensis 259 0 200415 species 1 126 0 871007 family 1 126 1 genus 105850 0 1 0 242703 species 126 Acidilobus saccharovorans 2309 0 2281 order 8 0 family 118883 8 2309 1137 0 2284 genus 3 265 Sulfolobus acidocaldarius 0 2285 species 1 1 no rank 2641160 0 344 1891280 species 0 1 Sulfolobus sp. A20 344 528 Sulfolobus islandicus 1 species 43080 0 371 69655 genus 0 1 Sulfolobus tokodaii 371 1 111955 species 0 252 genus 2100760 0 1 2287 species 0 1 252 Sulfolobus solfataricus 2 0 genus 41980 224 1 0 1006005 species 79 Metallosphaera cuprina 0 species 43687 1 Metallosphaera sedula 145 1 genus 12914 0 325 0 563177 species 1 Acidianus hospitalis 325 230 phylum 28890 0 1 63015 Euryarchaeota 7 12690 42 0 2283794 clade 17 0 183939 class 1 5 4989 Methanococci 16 0 2182 order 1 6 Methanococcales 4984 1930 0 family 196117 9 2 196119 genus 0 1 Methanotorris 425 13 Methanotorris igneus 412 0 2189 species 1 1 1 Methanocaldococcus 1505 7 0 196118 genus 1 2641196 no rank 0 286 286 Methanocaldococcus sp. FS406-22 644281 species 0 1 Methanocaldococcus jannaschii 237 0 species 2190 1 1 species 1301915 0 Methanocaldococcus bathoardescens 285 1 species 73913 0 253 Methanocaldococcus vulcanius 293 Methanocaldococcus fervens 0 83171 species 1 Methanocaldococcus infernus 150 1 0 species 67760 family 2183 0 6 3048 genus 155862 0 1 299 1 0 155863 species Methanothermococcus okinawensis 299 1 1 2749 Methanococcus 5 0 genus 2184 357 Methanococcus voltae 0 species 2188 1 1 0 species 39152 1798 Methanococcus maripaludis Methanococcus vannielii 184 1 2187 species 0 1 42879 species 0 Methanococcus aeolicus 409 183925 class 0 25 Methanobacteria 7701 7 1 24 0 order 2158 1 2 Methanobacteriales 7694 2178 family 0 1 254 1 0 genus 2179 254 Methanothermus fervidus 254 1 species 2180 0 22 2159 family 0 1 Methanobacteriaceae 7438 4 5 0 145260 genus 1 4 670 Methanothermobacter 153 Methanothermobacter wolfeii 0 species 145261 1 117 Methanothermobacter thermautotrophicus species 145262 0 1 198 0 2631116 no rank 1 0 866790 species 1 198 Methanothermobacter sp. CaT2 Methanothermobacter marburgensis 198 0 145263 species 1 1 Methanobacterium 2400 1 8 genus 2160 0 1 868131 species 0 Methanobacterium paludis 432 species 59277 0 1 Methanobacterium subterraneum 286 species 2162 0 1 424 Methanobacterium formicicum 0 877455 species 1 Methanobacterium lacus 389 Methanobacterium congolense 275 1 0 118062 species 593 2627676 no rank 0 2 Methanobacterium sp. MZ-A1 339 species 1911685 0 1 1 species 1379702 0 Methanobacterium sp. MB1 254 590 1 2316 genus 0 Methanosphaera stadtmanae 590 2317 species 0 1 7 0 2172 genus 1 7 3774 Methanobrevibacter 1 0 83816 species Methanobrevibacter ruminantium 537 1 0 species 294671 830 Methanobrevibacter olleyae species 2173 0 1 Methanobrevibacter smithii 719 787 Methanobrevibacter millerae 1 species 230361 0 0 2638681 no rank 2 894 Methanobrevibacter sp. AbM4 530 0 224719 species 1 364 Methanobrevibacter sp. YE315 1 1609968 species 0 36283 0 clade 2290931 114 class 183963 0 64 17473 Halobacteria 124 1 0 order 2235 28 57 Halobacteriales 6727 1 34 Halobacteriaceae 2128 1 0 2236 family 11 1 25 Halobacterium 1323 4 0 2239 genus 0 2668073 no rank 1 492 1 751944 species 0 492 Halobacterium sp. DL1 Halobacterium salinarum 331 1 2242 species 0 Halobacterium hubeiense 475 species 1407499 0 1 1 242 Halodesulfurarchaeum 1 2 1980514 genus 0 241 Halodesulfurarchaeum formicicum 1 0 1873524 species 351 Halalkalicoccus 5 1 332246 genus 0 2 Halalkalicoccus jeotgali 346 0 413810 species 1 0 1656823 genus 2 1 178 Halanaeroarchaeum 1 Halanaeroarchaeum sulfurireducens 177 species 1604004 0 1 1963268 family 0 16 Haloarculaceae 4542 61 1 genus 2237 0 5 Haloarcula 2006 31 1 0 species 51589 1 597 Haloarcula hispanica 392 Haloarcula taiwanensis 1 0 1932004 species Haloarcula marismortui 479 1 0 species 2238 1 no rank 2624677 0 507 507 Haloarcula sp. CBA1115 1 0 1592728 species 0 genus 1073987 2 1 Halorientalis 486 1 485 1 0 2648975 no rank 1 species 1932360 0 485 Halorientalis sp. IM1011 1 9 798 Halorhabdus 3 0 146825 genus 409 Halorhabdus tiamatea 1 species 430914 0 1 species 146826 0 Halorhabdus utahensis 380 genus 203135 0 2 Halomicrobium 500 4 1 57705 species 0 1 Halomicrobium mukohataei 496 6 691 Natronomonas 1 0 63743 genus 3 Natronomonas moolapensis 314 416273 species 0 1 371 Natronomonas pharaonis 2257 species 0 1 1644055 order 0 18 5222 Haloferacales 79 1 8 0 family 1644056 1 21 2841 Haloferacaceae 198 genus 293431 0 1 0 293091 species 1 198 Haloquadratum walsbyi 3 389 Halogeometricum 1 0 60846 genus 2 Halogeometricum borinquense 386 1 0 species 60847 0 2251 genus 4 65 2233 Haloferax 1 539 Haloferax mediterranei 0 species 2252 1 species 2246 0 1 876 Haloferax volcanii species 35746 0 1 Haloferax gibbonsii 753 no rank 2678336 0 1 409 409 halophilic archaeon DL31 0 species 756883 1 1963271 family 0 8 Halorubraceae 1893 26 1 1 32 Salinigranum 656 2 0 genus 1644057 624 Salinigranum rubrum species 755307 0 1 0 1209988 genus 2 5 375 Halopenitus 1 0 species 1048396 1 Halopenitus persicus 370 Halorubrum 836 15 1 56688 genus 0 3 362 Halorubrum lacusprofundi 1 0 species 2247 Halorubrum trapanicum 459 1 0 species 29284 1644060 order 0 17 5400 Natrialbales 69 1 1 72 Natrialbaceae 5331 16 0 family 1644061 0 genus 387342 1 610 Halopiger xanaduensis 610 387343 species 0 1 0 genus 1269201 1 410 1 no rank 2621923 0 410 410 Salinarchaeum sp. Harcht-Bsk1 0 1333523 species 1 0 63742 genus 1 466 Natrialba magadii 466 1 species 13769 0 genus 121871 0 3 Haloterrigena 1007 15 1 617 Haloterrigena turkmenica 0 species 62320 1 375 Haloterrigena daqingensis 588898 species 0 1 3 0 88723 genus 1 9 967 Natrinema 524 0 2622230 no rank 1 species 406552 0 1 524 Natrinema sp. J7-2 Natrinema pellirubrum 434 1 0 species 69525 305 genus 353799 0 1 Halostagnicola larsenii 305 1 353800 species 0 0 genus 29287 2 5 Natronococcus 537 1 1 29288 species 0 Natronococcus occultus 532 717 Halobiforma 1 1 203193 genus 0 2 1 0 species 229731 716 Halobiforma lacisalsi 240 2256 genus 0 1 Natronobacterium gregoryi 240 0 44930 species 1 25 Methanomicrobia 18810 1 0 224756 class 50 17 2191 order 0 1 4745 Methanomicrobiales 24 2 0 family 88404 764 2192 genus 0 2 764 Methanocorpusculum 1 1 Methanocorpusculum labreanum 763 0 83984 species 1 family 196137 0 1 412 2202 genus 0 1 412 1 2203 species 0 Methanospirillum hungatei 412 2194 family 0 7 Methanomicrobiaceae 2374 1 1 513 Methanolacinia 1 1 230355 genus 0 2 Methanolacinia petrolearia 512 1 species 54120 0 45989 genus 0 4 1860 Methanoculleus 24 1 593 2619537 no rank 0 1 Methanoculleus sp. MAB1 593 0 86622 species 1 585 Methanoculleus marisnigri 0 2198 species 1 0 species 83986 1 658 Methanoculleus bourgensis 6 family 1198451 0 1 1171 Methanoregulaceae 5 genus 395331 0 3 710 Methanoregula 9 1 1 0 species 358766 Methanoregula boonei 286 1 species 882104 0 Methanoregula formicica 415 genus 475087 0 2 456 Methanosphaerula 4 1 Methanosphaerula palustris 452 1 0 475088 species 5 order 570264 0 1 1258 Methanocellales 7 0 570265 family 4 2 1251 Methanocellaceae 1 3 570266 genus 0 1 1249 Methanocella 5 Methanocella arvoryzae 1039 0 species 1175445 1 205 Methanocella conradii 0 1175444 species 1 0 94695 order 27 20 Methanosarcinales 12782 1 1 14 11529 Methanosarcinaceae 23 0 family 2206 571 genus 101191 0 1 571 Methanomethylovorans hollandica 1 0 101192 species 1 2220 genus 0 463 Methanolobus psychrophilus 463 1 420950 species 0 690 2 genus 2225 0 Methanococcoides methylutens 396 1 0 species 2226 Methanococcoides burtonii 294 29291 species 0 1 1 0 2321 genus 574 0 species 2322 1 Methanohalobium evestigatum 574 13 0 genus 2207 1 54 Methanosarcina 8173 Methanosarcina mazei 856 0 species 2209 1 446 Methanosarcina acetivorans 1 2214 species 0 Methanosarcina barkeri 1915 1 2208 species 0 569 Methanosarcina lacustris 0 170861 species 1 499 Methanosarcina vacuolata 2215 species 0 1 species 2210 0 1 432 Methanosarcina thermophila 703 Methanosarcina horonobensis 0 species 418008 1 2165 no rank 2644672 0 4 0 1434099 species 1 531 Methanosarcina sp. Kolksee 1 0 species 1434100 398 Methanosarcina sp. MTP4 1 1434103 species 0 575 Methanosarcina sp. WWM596 Methanosarcina sp. WH1 661 1 0 1434102 species Methanosarcina siciliae 534 1 species 38027 0 330 1 genus 196136 0 0 39669 species 1 330 Methanosalsum zhilinae 3 0 genus 2175 1 1 714 Methanohalophilus Methanohalophilus mahii 305 1 0 2176 species 408 Methanohalophilus halophilus 1 0 species 2177 1 1233 Methanosaetaceae 1 3 family 143067 0 0 genus 2222 2 1232 613 Methanosaeta harundinacea species 301375 0 1 619 Methanothrix soehngenii 1 0 species 2223 0 clade 2283796 21 4828 330 1803510 clade 0 2 379546 genus 0 2 330 Aciduliprofundum boonei 216 1 379547 species 0 0 2633939 no rank 1 114 1 species 673860 0 114 Aciduliprofundum sp. MAR08-339 1 9 4498 Thermoplasmata 19 0 183967 class 1 Thermoplasmatales 2497 14 10 2301 order 0 900 1 no rank 1919231 0 0 species 1054217 1 Thermoplasmatales archaeon BRNA1 900 0 family 46630 1 407 0 46631 genus 1 407 407 Picrophilus torridus 0 species 82076 1 2 481 Ferroplasmaceae 1 0 90142 family 3 479 2 0 74968 genus 1 97393 species 0 255 Ferroplasma acidarmanus 74969 species 0 1 Ferroplasma acidiphilum 224 446 2 0 family 46659 2 2302 genus 0 446 1 0 species 2303 Thermoplasma acidophilum 337 0 species 50339 1 109 Thermoplasma volcanium 2 0 family 1747776 249 2 Cuniculiplasma 249 1 0 1747777 genus 2 247 Cuniculiplasma divulgatum 0 1673428 species 1 0 1234666 no rank 1 620 1 0 species 1495144 methanogenic archaeon ISO4-H5 620 order 1235850 0 7 Methanomassiliicoccales 1372 2 1 1577788 family 0 4 646 Methanomassiliicoccaceae 2 1 genus 1080709 0 1 443 443 Candidatus Methanomassiliicoccus intestinalis 1 1406512 species 0 201 Candidatus Methanoplasma 1 1 genus 1607807 0 2 200 Candidatus Methanoplasma termitum 1 0 species 1577791 724 2 2517203 family 0 1 Candidatus Methanomethylophilus 724 4 2 genus 1291539 0 1 species 1291540 0 Candidatus Methanomethylophilus alvus 720 9 Thermococci 7366 1 0 class 183968 40 2258 order 0 39 7357 Thermococcales 25 1 38 0 family 2259 1 38 7332 Thermococcaceae 1 Thermococcus 6164 74 29 2263 genus 0 1 1505907 species 0 226 Thermococcus eurythermalis 1712654 species 0 1 Thermococcus piezophilus 178 1 species 187878 0 193 Thermococcus gammatolerans 1 species 277988 0 Thermococcus thioreducens 227 1 0 species 187880 217 Thermococcus radiotolerans 0 species 55802 1 315 Thermococcus barophilus 0 53952 species 1 Thermococcus peptonophilus 146 Thermococcus barossii 307 species 54077 0 1 172049 species 0 1 Thermococcus sibiricus 164 582419 species 0 1 157 Thermococcus paralvinellae Thermococcus celer 222 1 species 2264 0 262 Thermococcus profundus 0 species 49899 1 species 2265 0 1 Thermococcus litoralis 194 235 Thermococcus guaymasensis 110164 species 0 1 Thermococcus kodakarensis 172 1 0 311400 species Thermococcus chitonophagus 161 1 species 54262 0 0 72803 species 1 218 Thermococcus siculi Thermococcus cleftensis 348 0 163003 species 1 Thermococcus pacificus 168 71998 species 0 1 0 2627626 no rank 6 1368 100 Thermococcus sp. 2319x1 0 1674923 species 1 1 0 species 2016361 Thermococcus sp. EXT12c 173 species 1042877 0 1 314 Thermococcus sp. 4557 Thermococcus sp. P6 207 1 0 122420 species 345 Thermococcus sp. 5-4 1 2008440 species 0 Thermococcus sp. AM4 229 1 0 246969 species 297 Thermococcus nautili 1 0 species 195522 Thermococcus gorgonarius 161 1 species 71997 0 0 species 342948 1 154 Thermococcus onnurineus 97 1 genus 83867 0 0 species 971279 1 97 Palaeococcus pacificus 1033 genus 2260 0 7 196 Pyrococcus yayanosii 1 1008460 species 0 0 2261 species 1 Pyrococcus furiosus 172 306 2 no rank 2629106 0 Pyrococcus sp. NA2 102 1 0 species 342949 Pyrococcus sp. ST04 204 1 1183377 species 0 0 53953 species 1 61 Pyrococcus horikoshii 208 Pyrococcus abyssi 29292 species 0 1 1 0 species 1609559 90 Pyrococcus kukulkanii 12 0 183980 class 1 3 1841 Archaeoglobi Archaeoglobales 1838 1 1 order 2231 0 11 10 0 2232 family 1837 3 genus 190818 0 1 439 Geoglobus 3 206 Geoglobus ahangari species 113653 0 1 1 565033 species 0 Geoglobus acetivorans 230 1 Ferroglobus 181 2 2 genus 54260 0 179 Ferroglobus placidus 0 species 54261 1 0 genus 2233 5 1 1217 Archaeoglobus 1 121 Archaeoglobus profundus 1 species 84156 0 382 Archaeoglobus fulgidus 0 species 2234 1 Archaeoglobus sulfaticallidus 527 0 1316941 species 1 Archaeoglobus veneficus 186 1 0 species 58290 91 1783276 clade 0 1 91 1 1801631 phylum 0 2490204 genus 0 1 91 1 0 1920749 species 91 Candidatus Micrarchaeota archaeon Mia14