members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4605 47188318 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 34747 name 0 0 1 38 Bacteria 1 2 superkingdom 47118808 4318 0 1783257 clade 86 29450 0 13063 24 0 1 74201 phylum Verrucomicrobia 6 1991 2 0 417295 no rank Verrucomicrobia bacterium 0 1 1219 species 2026799 species 1637999 0 1 772 Verrucomicrobia bacterium IMCC26134 1 92 0 class 134549 0 92 1 genus 134550 1 92 0 2648876 no rank 0 92 1 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 6 6246 0 class 1 203494 Verrucomicrobiae 5 Verrucomicrobiales 14 0 5 6241 48461 1 order 6227 4 0 family 1 1647988 Akkermansiaceae 12 genus 239934 1 0 6215 3 4 Akkermansia 1 1489 0 species 1679444 Akkermansia glycaniphila 239935 species 0 1 4722 Akkermansia muciniphila 414999 1 class 0 12 4220 62 Opitutae 649 4 0 1 415001 order Puniceicoccales 13 Puniceicoccaceae 2 636 3 0 family 1 415002 4 Coraliomargarita genus 442430 1 0 2 634 1 630 0 395922 species Coraliomargarita akajimensis 0 3509 7 415000 1 order Opitutales 34 0 3475 6 134623 1 family Opitutaceae 61 2 994 0 1 178440 genus Opitutus 17 Opitutus terrae 977 1 0 107709 species 0 2 1015 1961799 1 genus Lacunisphaera 32 983 1 0 species 1838286 Lacunisphaera limnophila no rank 278955 1 1405 0 0 1405 1 species 794903 Opitutaceae bacterium TAV5 0 508 2 1955630 class order 717963 0 2 508 508 2 0 family 717964 2 508 0 511745 genus Methylacidiphilum infernorum 159 1 0 511746 species 591154 species 349 1 0 Methylacidiphilum fumariolicum 203682 phylum 33 10907 0 2517206 class 3 289 0 1 1127829 order 3 289 0 3 Candidatus Brocadiales 0 286 2 family 1127830 380738 1 genus 0 286 2 2 Candidatus Kuenenia Candidatus Kuenenia stuttgartiensis 284 1 0 species 174633 12 Phycisphaerae 1 666505 class 7 1846 0 2 931 0 order 2483366 0 931 2 2483367 family 2483368 genus 931 2 0 Phycisphaerae bacterium ST-PulAB-D4 1941349 species 435 1 0 Phycisphaerae bacterium L21-RPul-D3 496 1 0 1940790 species 666506 1 order 0 4 903 13 Phycisphaerales Phycisphaeraceae 11 0 890 3 666507 1 family 0 879 2 666508 1 genus Phycisphaera 11 1 868 0 547188 species Phycisphaera mikurensis 1 203683 class 23 8772 0 38 Planctomycetia 464 2 0 2691355 order 2 464 0 family 1914233 2 464 0 1 113 genus Gemmata 2 462 1 0 no rank 2622970 462 1 0 1630693 species Gemmata sp. SH-PL17 150 Planctomycetales order 112 1 0 4604 10 0 4454 9 family 126 1 Planctomycetaceae 21 856 1 0 1936111 genus Fuerstia marisgermanicae 1891926 species 856 1 0 0 3 2477 118 1 genus Planctomyces 9 0 2 2468 2648843 no rank 0 844 1 1632864 species Planctomyces sp. SH-PL14 species 1636152 0 1 1624 Planctomyces sp. SH-PL62 genus 1649490 1 0 416 2 2 Rubinisphaera Rubinisphaera brasiliensis 1 414 0 119 species 0 684 2 1649480 1 genus Planctopirus 4 0 1 680 120 species Planctopirus limnophila order 2691356 0 2502 7 17 Isosphaeraceae family 1 1763524 7 2502 0 8 Paludisphaera 1 1763521 genus 1154 2 0 1387353 species 0 1 1146 Paludisphaera borealis 2 819 0 1 466152 genus Singulisphaera 6 466153 species 813 1 0 Singulisphaera acidiphila 2 512 0 genus 1 127 Isosphaera 3 Isosphaera pallida species 128 0 509 1 3 1164 0 2691354 order 755 2 0 2691357 family 265488 genus 0 350 1 species 265606 0 1 350 Rhodopirellula baltica genus 123 0 1 405 125 species 0 1 405 Pirellula staleyi 2691358 family 0 1 409 genus 1676125 409 1 0 1331910 species 1 409 0 Thermogutta terrifontis 204428 phylum 0 21 1504 0 1504 21 class 204429 51291 order 13 917 0 4 Chlamydiaceae 809 1 family 0 917 13 12 913 0 1113537 no rank 12 913 0 genus 1 810 Chlamydia 2 83560 species 1 44 0 Chlamydia muridarum Chlamydia suis 0 63 1 species 83559 0 161 1 species 83554 Chlamydia psittaci 1 41 0 83557 species Chlamydia caviae Chlamydia felis 0 1 82 83556 species 72 1 0 species 813 Chlamydia trachomatis Chlamydia abortus 46 1 0 83555 species 83558 species 0 32 1 Chlamydia pneumoniae 0 1 154 1457153 species Chlamydia gallinacea Chlamydia pecorum 0 1 176 85991 species Chlamydia avium 0 1 40 1457141 species 0 8 587 1963360 1 order Parachlamydiales 1 92712 family 0 1 215 215 1 0 34093 genus 1 215 0 83561 species Simkania negevensis 1 Parachlamydiaceae 92713 1 family 0 3 271 1 138 0 83551 genus Parachlamydia acanthamoebae species 83552 1 138 0 genus 282132 132 1 0 0 1 132 species 389348 Candidatus Protochlamydia naegleriophila 92714 1 family 0 100 3 1 Waddliaceae 0 99 2 71666 1 genus Waddlia 1 Waddlia chondrophila 71667 species 0 1 98 0 3 3231 phylum 256845 Lentisphaeria 13 3 3231 0 class 1 1313211 1 278082 order 3218 2 0 561 Victivallales no rank 1674876 1 2657 0 2094242 species 0 2657 1 Victivallales bacterium CCUG 44730 134625 phylum 5 745 0 Kiritimatiellae 3 0 5 745 class 1921781 1 0 4 742 order 1921782 1 Kiritimatiellales 14 3 728 0 1 1921783 family Kiritimatiellaceae 1 genus 1 1921784 727 2 0 20 Kiritimatiella 0 707 1 1307763 species Kiritimatiella glycovorans 3337 13 0 phylum 40117 class 203693 1 0 13 3337 14 Nitrospira 12 3323 0 order 1 189778 Nitrospirales 28 Nitrospiraceae 3 0 11 3295 family 189779 1 Nitrospira 10 0 5 2065 genus 1234 1 Candidatus Nitrospira inopinata 0 1 305 1715989 species Nitrospira moscoviensis 0 940 1 species 42253 0 1 430 species 1325564 Nitrospira japonica 330214 species 0 380 1 Nitrospira defluvii 2 Leptospirillum 1 179 genus 4 918 0 species group 261386 0 1 324 Leptospirillum ferriphilum 0 324 1 178606 species 261385 species group 0 1 429 0 429 1 1660083 species Leptospirillum sp. Group II 'CF-1' 0 163 1 species group 655606 Leptospirillum ferrooxidans 163 1 0 species 180 1 309 0 28261 genus Thermodesulfovibrio yellowstonii 309 1 0 species 28262 508458 phylum 10 4538 0 4538 10 0 class 1 649775 Synergistia 10 Synergistales 12 4528 9 0 1 649776 order 105 Synergistaceae family 1 649777 4516 8 0 0 148 1 49894 genus Acetomicrobium mobile 0 1 148 97477 species 1 533 0 81466 genus Aminobacterium colombiense 81468 species 533 1 0 genus 336260 252 1 0 Thermovirga lienii 0 1 252 species 336261 genus 1 81461 515 2 0 11 Thermanaerovibrio 0 1 504 species 81462 Thermanaerovibrio acidaminovorans 1 508459 genus 2963 2 0 8 Cloacibacillus species 1197717 0 1 2955 Cloacibacillus porcorum phylum 200930 0 1304 7 class 1 68337 7 1304 0 1 Deferribacteres 3 Deferribacterales 191393 1 order 0 1303 6 family 1 191394 5 1300 0 11 Deferribacteraceae 326 1 0 genus 53572 197162 species 0 1 326 Deferribacter desulfuricans genus 545865 0 278 1 Calditerrivibrio nitroreducens 0 278 1 species 477976 genus 117999 0 1 447 Denitrovibrio acetiphilus species 118000 0 1 447 2351 genus 0 238 1 Flexistipes sinusarabici 2352 species 0 238 1 68297 phylum 0 429 3 429 3 0 class 203486 3 429 0 order 203487 3 429 0 1 203488 family Dictyoglomaceae 1 2 428 0 13 genus 513050 species 0 1 259 Dictyoglomus turgidum 1 169 0 species 14 Dictyoglomus thermophilum 200938 phylum 0 1302 5 Chrysiogenetes 4 0 5 1302 118001 1 class 23 Chrysiogenales 189769 1 order 0 1298 4 1 189770 family 1275 3 0 37 Chrysiogenaceae 0 2 1238 393029 1 genus Desulfurispirillum 1 936456 species 0 1237 1 Desulfurispirillum indicum 347 36638088 0 1783270 clade 0 36633379 333 clade 68336 28 Bacteroidetes phylum 1 976 306 36621068 0 0 3926 7 class 1937959 1 Saprospiria 7 1 1936988 order 3919 6 0 14 Saprospirales 2 779 0 89374 family 1 1007 genus 779 2 0 1 Saprospira species 1008 0 778 1 Saprospira grandis family 1 1937961 3126 3 0 1 Haliscomenobacteraceae 2349 1 genus 0 2 3125 5 Haliscomenobacter Haliscomenobacter hydrossis 3120 1 0 species 2350 0 14443 16 class 1853228 1 Chitinophagia 14 Chitinophagales 18 15 14429 0 1 1853229 order 20 Chitinophagaceae 563835 1 family 0 14411 14 Niabella 16 0 3058 3 379899 1 genus species 1176587 1 1496 0 Niabella ginsenosidivorans species 446683 1546 1 0 Niabella soli 2 Filimonas 1 649460 genus 2795 2 0 0 2793 1 477680 species Filimonas lacunae genus 1769012 1 889 0 0 889 1 no rank 2636138 Arachidicoccus sp. BS20 0 889 1 1850526 species 1 354354 genus 2151 2 0 37 Niastella Niastella koreensis 354356 species 2114 1 0 Flavisolibacter 3 0 2 1138 398041 1 genus Flavisolibacter tropicus 0 1 1135 species 1492898 Chitinophaga 5 3 4360 0 genus 1 79328 Chitinophagaceae bacterium 13 species 2029983 0 1 1419 79329 species 1 2936 0 Chitinophaga pinensis Cytophagia 85 49 60239 0 class 1 768503 order 768507 1 0 48 60154 224 Cytophagales family 89373 1 0 15727 14 105 Cytophagaceae genus 107 1 0 6 7347 41 Spirosoma 0 1388 1 species 2057025 Spirosoma sp. HA7 1387 1 0 1178516 species Spirosoma montaniterrae Spirosoma aerolatum species 1211326 1 1785 0 Spirosoma radiotolerans species 1379870 0 1462 1 Spirosoma rigui 0 1 1284 564064 species 319458 genus 1 1237 0 1237 1 0 316068 species Leadbetterella byssophila 1 120831 genus 2 2501 0 14 Dyadobacter Dyadobacter fermentans 1 2487 0 species 94254 genus 1 978 700 2 0 3 Cytophaga Cytophaga hutchinsonii 0 697 1 species 985 genus 105 1 2534 0 106 species 0 1 2534 Runella slithyformis 861914 genus 0 1303 1 0 1303 1 2620963 no rank Fibrella sp. ES10-3-2-2 species 1834519 0 1303 1 1 200667 family 3976 4 0 2 Flammeovirgaceae 340671 no rank 1 2558 0 Flammeovirgaceae bacterium 311 1 2558 0 species 1257021 0 2 1416 genus 59739 1 Flammeovirga 1 1415 1 0 2637820 no rank Flammeovirga sp. MY04 0 1 1415 1191459 species 0 2008 1 family 1853234 1 2008 0 genus 59740 0 2008 1 no rank 2664020 Persicobacter sp. JZB09 1085624 species 0 1 2008 1937968 family 792 1 0 792 1 0 1937972 genus 0 1 792 species 999 Bernardetia litoralis family 1853232 1 0 16 31404 57 Hymenobacteraceae 3 3729 0 genus 1 323449 Pontibacter 7 Pontibacter korlensis 400092 species 2081 1 0 Pontibacter akesuensis species 388950 1641 1 0 136 Hymenobacter 1 89966 genus 22989 8 0 Hymenobacter sedentarius species 1411621 3705 1 0 5 15828 0 no rank 2615202 3544 1 0 1356852 species Hymenobacter sp. APR13 0 3591 1 species 1484118 Hymenobacter sp. PAMC 26628 Hymenobacter sp. PAMC 26554 0 3691 1 1484116 species Hymenobacter sp. DG25B 1 2924 0 1385664 species Hymenobacter sp. DG25A species 1385663 0 2078 1 Hymenobacter swuensis 1446467 species 0 3320 1 0 4629 4 genus 1379908 1 Rufibacter 7 512763 species 1793 1 0 Rufibacter tibetensis no rank 2639626 2829 2 0 1379910 species 0 1070 1 Rufibacter sp. DG31D species 1379909 1 1759 0 Rufibacter sp. DG15C 0 2 532 family 2762301 Marivirga 4 0 532 2 genus 869806 1 528 1 0 species 1006 Marivirga tractuosa family 563798 7 4993 0 Cyclobacterium 6 0 1844 3 genus 68288 1 Cyclobacterium amurskyense 954 1 0 320787 species species 104 1 884 0 Cyclobacterium marinum 232244 genus 858 1 0 Belliella baltica 232259 species 858 1 0 Echinicola 6 1490 2 0 genus 1 390846 species 390884 1 1484 0 Echinicola vietnamensis genus 246875 1 801 0 1727163 species 0 801 1 Algoriphagus sp. M8-2 1501348 family 498 2 0 247 1 0 273135 genus 2641185 no rank 1 247 0 Cardinium endosymbiont of Encarsia pergandiella 249402 species 1 247 0 1 251 0 genus 281119 Candidatus Amoebophilus asiaticus 0 251 1 281120 species Sphingobacteriia 9 21588 24 0 class 1 117747 order 1 200666 23 21579 0 6 Sphingobacteriales 35 Sphingobacteriaceae family 1 84566 22 21573 0 3 Mucilaginibacter genus 1 423349 4 4102 0 Mucilaginibacter sp. BJC16-A31 1127 1 0 species 1234841 0 1447 1 1550579 species Mucilaginibacter gotjawali 1525 1 0 2617802 no rank Mucilaginibacter sp. PAMC 26640 species 1300914 0 1525 1 29 Sphingobacterium 1 28453 genus 7141 6 0 Sphingobacterium mizutaii 1 1617 0 species 1010 2609468 no rank 0 4 5495 0 1695 1 species 2003121 Sphingobacterium sp. G1-14 species 1933220 0 1421 1 Sphingobacterium sp. B29 species 743722 0 1 1325 Sphingobacterium sp. 21 1 1054 0 1538644 species Sphingobacterium sp. ML3W 929509 1 genus 0 2 1142 9 Solitalea species 995 1133 1 0 Solitalea canadensis 5 Pseudopedobacter 1649482 1 genus 0 2 1341 0 1336 1 151895 species Pseudopedobacter saltans 84568 no rank 1 1214 0 species 1986952 1214 1 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 6 6598 0 1 84567 genus Pedobacter 3 species 363852 1 893 0 Pedobacter ginsengisoli 0 1 603 species 188932 Pedobacter cryoconitis Pedobacter steynii 0 1 1371 430522 species 2628915 no rank 0 1 1700 Pedobacter sp. PACM 27299 1700 1 0 1727164 species species 984 0 1 2028 Pedobacter heparinus 67 36334720 0 1 200643 class Bacteroidia 254 order 171549 1 0 36328663 58 3696 Bacteroidales 1 171550 family 475155 5 0 25 Rikenellaceae 163 Alistipes 1 239759 genus 2 473234 0 214856 species 0 1 473071 Alistipes finegoldii 3 Mucinivorans genus 1611681 1 0 2 1896 Mucinivorans hirudinis 1433126 species 0 1893 1 0 19082236 5 no rank 333046 19081361 3 0 genus 909656 Bacteroides dorei 357276 species 1 2937370 0 376805 species 184292 1 0 Bacteroides salanitronis 0 1 15959699 821 species Bacteroides vulgatus 1 Candidatus Azobacteroides genus 511434 1 0 875 2 Candidatus Azobacteroides pseudotrichonymphae 1 874 0 511435 species 5 22444 0 2005520 family 0 1 3210 genus 1784836 3210 1 0 species 1562970 Fermentimonas caenicola 307628 1 genus 0 12428 2 4 Petrimonas Petrimonas mucosa 1642646 species 0 12424 1 genus 1 294702 6806 2 0 78 Proteiniphilum 0 6728 1 species 1642647 Proteiniphilum saccharofermentans Barnesiellaceae 5 300389 3 0 family 1 2005519 123 Barnesiella 1 397864 genus 300384 2 0 0 300261 1 species 397865 Barnesiella viscericola family 1 2005525 7 4739782 0 284 Tannerellaceae 418 Parabacteroides 375288 1 genus 0 4703271 3 2548514 1 0 2649774 no rank Parabacteroides sp. CT06 2025876 species 0 1 2548514 Parabacteroides distasonis 823 species 2154339 1 0 36227 3 0 1 195950 genus Tannerella 24 2620507 no rank 1 7459 0 Tannerella sp. oral taxon HOT-286 species 712710 7459 1 0 Tannerella forsythia species 28112 0 1 28744 family 2005523 2 3799 0 genus 1 346096 3799 2 0 5 Paludibacter 185300 species 3794 1 0 Paludibacter propionicigenes family 171552 1 0 11 482367 15 Prevotellaceae 482352 10 0 1 838 genus Prevotella 466 839 species 0 9424 1 Prevotella ruminicola 0 1 424499 28131 species Prevotella intermedia Prevotella melaninogenica 0 1 6475 species 28132 Prevotella fusca 589436 species 6370 1 0 species 52227 1 12987 0 Prevotella dentalis Prevotella denticola 0 1 8232 species 28129 0 5137 1 species 76123 Prevotella enoeca 0 7451 1 species 1177574 Prevotella jejuni 1 1311 0 2638335 no rank 0 1 1311 652716 species Prevotella sp. oral taxon 299 family 1 171551 15845 4 0 17 Porphyromonadaceae 74 Porphyromonas genus 836 1 0 3 15828 Porphyromonas gingivalis 837 species 1 13774 0 Porphyromonas asaccharolytica 1980 1 0 species 28123 Bacteroidaceae 151 0 11054041 11 815 1 family 816 1 genus 0 10 11053890 158923 Bacteroides Bacteroides zoogleoformans 298616 1 0 species 28119 Bacteroides caccae 47678 species 0 178887 1 Bacteroides caecimuris 918599 1 0 species 1796613 species 290053 416976 1 0 Bacteroides helcogenes Bacteroides ovatus 28116 species 0 4530784 1 Bacteroides heparinolyticus 0 1 346992 species 28113 246787 species 1 1144955 0 Bacteroides cellulosilyticus Bacteroides fragilis 0 1 1682124 species 817 0 1377034 1 818 species Bacteroides thetaiotaomicron family 1 1853231 147597 3 0 9 Odoribacteraceae 0 147588 2 283168 1 genus Odoribacter 9 Odoribacter splanchnicus 147579 1 0 28118 species 0 1 1312 185291 no rank species 1400053 0 1312 1 Bacteroidales bacterium CF 8 5803 0 1 1970189 order Marinilabiliales 2 1 558415 family 1120 2 0 1 Marinilabiliaceae 0 1119 1 1193324 genus Alkalitalea saponilacus 1 1119 0 species 889453 family 1970190 1 473 0 genus 1970191 473 1 0 0 1 473 species 1307839 Salinivirga cyanobacteriivorans 4 Prolixibacteraceae family 1471398 1 0 2868 2 1471399 genus 0 2864 1 species 1168034 1 2864 0 Draconibacterium orientale 2 1340 0 1 1573805 family Marinifilaceae 2 1338 1 0 2060722 genus Marinifilaceae bacterium SPP2 1717717 species 0 1 1338 Flavobacteriia 45 0 180938 135 class 117743 1 134 180893 0 order 1 200644 Flavobacteriales 104 3 197 0 no rank 313602 Candidatus Walczuchella 2 82 2 0 genus 1 1940138 Candidatus Walczuchella monophlebidarum species 1415657 1 80 0 1 115 0 genus 336809 Candidatus Sulcia muelleri 336810 species 0 1 115 family 1333713 1032 2 0 10 Owenweeksia genus 1 267986 2 1032 0 Owenweeksia hongkongensis 1022 1 0 253245 species 0 1119 2 family 1853230 1119 2 0 1 332102 genus Fluviicola 179 Fluviicola taffensis species 191579 1 940 0 39782 family 9 774 0 13 Blattabacterium 34098 1 genus 0 774 9 1653831 species 1 69 0 Blattabacterium cuenoti Blattabacterium punctulatus 0 1 180 species 164514 0 6 512 no rank 2647581 Blattabacterium sp. (Blatta orientalis) 1 51 0 species 367806 Blattabacterium sp. (Blaberus giganteus) species 1186051 0 154 1 0 1 97 species 39768 Blattabacterium sp. (Mastotermes darwiniensis) Blattabacterium sp. (Nauphoeta cinerea) 0 72 1 species 1316444 624186 species 0 68 1 Blattabacterium sp. (Blattella germanica) 1 70 0 species 367488 Blattabacterium sp. (Periplaneta americana) family 1 49546 94 108951 0 3653 Flavobacteriaceae 336276 genus 0 332 1 0 332 1 2615019 no rank Olleya sp. Bg11-27 0 1 332 2058135 species genus 83612 1 880 0 880 1 0 species 57029 Psychroflexus torquis genus 143222 0 1 1303 no rank 2633436 1 1303 0 Salegentibacter sp. T436 1303 1 0 species 1729720 692 1 0 genus 112040 species 63186 1 692 0 Zobellia galactanivorans 252306 genus 0 1048 1 Robiginitalea biformata 0 1048 1 252307 species 1 456 0 genus 1518147 1 456 0 species 1790137 Wenyingzhuangia fucanilytica 0 2078 4 104264 1 genus Cellulophaga 2 1 782 0 59600 species Cellulophaga algicola Cellulophaga baltica 76594 species 0 1 767 Cellulophaga lytica 979 species 0 527 1 2 400 0 225842 genus 400 2 0 no rank 2644710 0 1 129 1336795 species Formosa sp. Hel3_A1_48 Formosa sp. Hel1_33_131 0 271 1 1336794 species 0 1221 2 genus 417127 1 Zunongwangia 10 1 1211 0 species 398743 Zunongwangia profunda genus 216431 1 495 0 0 1 495 313588 species Croceibacter atlanticus 252356 genus 4 2550 0 species 1178778 1 735 0 Maribacter cobaltidurans 0 3 1815 no rank 2615042 0 1 681 1836467 species Maribacter sp. T28 1644130 species 0 1 681 Maribacter sp. 1_2014MBL_MicDiv Maribacter sp. HTCC2170 species 313603 0 1 453 genus 153265 0 698 1 101385 species 1 698 0 Aequorivita sublithincola 0 1496 2 61432 no rank Flavobacteriaceae bacterium 3519-10 1 979 0 531844 species 1150389 species 517 1 0 Flavobacteriaceae bacterium UJ101 104267 1 genus 0 1558 5 2 Tenacibaculum Tenacibaculum maritimum 107401 species 465 1 0 Tenacibaculum todarodis 1850252 species 226 1 0 species 584609 1 464 0 Tenacibaculum jejuense 0 401 1 669041 species Tenacibaculum dicentrarchi genus 1209327 1 882 0 Flavivirga eckloniae 0 882 1 species 1803846 1 1016 genus 51813 15 0 21 Capnocytophaga Capnocytophaga canimorsus 0 1 1311 species 28188 0 1560 1 species 1848904 Capnocytophaga stomatis no rank 2640652 23832 6 0 1316593 species 0 1977 1 Capnocytophaga sp. oral taxon 864 Capnocytophaga sp. oral taxon 878 1316596 species 0 1 18324 Capnocytophaga sp. ChDC OS43 0 1211 1 209053 species species 1945658 0 605 1 Capnocytophaga sp. H4358 0 1 1307 species 1705617 Capnocytophaga sp. oral taxon 323 1945657 species 0 408 1 Capnocytophaga sp. H2931 Capnocytophaga cynodegmi species 28189 0 1 910 1 1173 0 species 1018 Capnocytophaga ochracea 882 1 0 species 1017 Capnocytophaga gingivalis Capnocytophaga haemolytica 0 1 1456 45243 species 19349 1 0 327575 species Capnocytophaga leadbetteri Capnocytophaga sputigena species 1019 0 1 1319 Gramella 15 0 5 3663 genus 292691 1 1 794 0 species 411153 Gramella forsetii 1 859 0 species 1486245 Gramella flava 0 376 1 1913577 species Gramella sp. LPB0144 Gramella sp. SH35 species 2126553 0 1619 1 111500 genus 0 1849 2 111501 species 903 1 0 Muricauda ruestringensis Muricauda lutaonensis species 516051 1 946 0 475 1 0 1649495 genus 1 475 0 no rank 2622645 0 1 475 1936081 species Seonamhaeicola sp. S2-3 0 1 1311 178469 genus Arenibacter algicola 0 1 1311 species 616991 genus 389486 1 262 0 0 1 262 2648869 no rank Sediminicola sp. YIK13 0 262 1 species 1453352 291183 genus 1413 3 0 0 2 968 no rank 2647285 0 1 429 species 2057808 Lacinutrix sp. Bg11-31 Lacinutrix sp. 5H-3-7-4 983544 species 0 539 1 445 1 0 species 1486034 Lacinutrix venerupis 286104 genus 0 889 2 no rank 2615021 0 2 889 1 419 0 754409 species Winogradskyella sp. PG-2 Winogradskyella sp. J14-2 species 1936080 1 470 0 0 9 7649 genus 237 1 Flavobacterium 4 Flavobacterium columnare 1704 1 0 species 996 Flavobacterium branchiophilum species 55197 1 437 0 Flavobacterium indicum 1 490 0 312277 species species 1763534 0 300 1 Flavobacterium crassostreae Flavobacterium gilvum species 1492737 0 1 955 0 1 879 1306519 species Flavobacterium commune 96345 species 0 353 1 Flavobacterium psychrophilum species 986 0 2527 1 Flavobacterium johnsoniae 58 Myroides genus 76831 1 0 9902 5 Myroides profundi species 480520 0 434 1 0 1305 2 2642485 no rank Myroides sp. A21 1583100 species 544 1 0 0 761 1 species 1458492 Myroides sp. ZB35 Myroides odoratimimus 8105 1 0 76832 species genus 358023 1 342 0 1622118 species 1 342 0 Lutibacter profundi 3 Dokdonia 326319 1 genus 0 4 919 Dokdonia donghaensis 0 1 264 species 326320 2615033 no rank 2 652 0 species 313590 0 1 167 Dokdonia sp. MED134 Dokdonia sp. 4H-3-7-5 485 1 0 species 983548 genus 261827 623 1 0 1736674 species 623 1 0 Algibacter alginicilyticus genus 1176327 357 1 0 no rank 2636237 0 357 1 Aureitalea sp. RR4-38 357 1 0 species 2094025 1 363408 genus 5 2096 0 2 Nonlabens 2615035 no rank 0 853 2 species 1476901 0 1 514 Nonlabens sp. MIC269 Nonlabens sp. MB-3u-79 2058134 species 0 339 1 Nonlabens sediminis species 319236 0 1 452 789 1 0 328515 species Nonlabens dokdonensis genus 393005 0 729 1 2069432 species 729 1 0 Tamlana sp. UJ94 0 1 750 2700084 genus 1 750 0 1850246 species Lutibacter sp. LPB0138 1204360 genus 1201 1 0 species 762954 1201 1 0 Siansivirga zeaxanthinifaciens 3 Polaribacter genus 52959 1 0 2966 6 Polaribacter vadi species 1774273 0 632 1 3 1510 0 no rank 196858 1 684 0 species 313598 Polaribacter sp. MED152 320 1 0 species 1529069 Polaribacter sp. BM10 species 2058137 0 1 506 Polaribacter sp. ALD11 Polaribacter reichenbachii 0 821 1 996801 species family 1755828 0 1 83 genus 1755829 0 83 1 Ichthyobacterium seriolicida species 242600 1 83 0 2762318 family 68633 22 0 genus 1 34084 2 1068 0 2 Riemerella Riemerella anatipestifer 1066 1 0 34085 species Ornithobacterium 183 0 2 39240 genus 28250 1 species 28251 0 39057 1 Ornithobacterium rhinotracheale 10 19791 0 2782232 no rank genus 2782228 0 3764 1 Chryseobacterium taklimakanense 0 3764 1 536441 species 34 Chryseobacterium genus 1 59732 16027 9 0 3 4593 0 no rank 2593645 Chryseobacterium sp. StRB126 0 1 1384 878220 species species 2015076 0 1 1731 Chryseobacterium sp. T16E-39 0 1478 1 1721091 species Chryseobacterium sp. IHB B 17019 species 1685010 0 1 864 Chryseobacterium glaciei Chryseobacterium piperi 0 761 1 species 558152 0 1 5737 1324352 species Chryseobacterium gallinarum 253 species 1 2333 0 Chryseobacterium indologenes Chryseobacterium camelliae 1705 1 0 1265445 species 1 Weeksella 1 1013 genus 2 238 0 1014 species 0 1 237 Weeksella virosa 17 Elizabethkingia 1 308865 genus 8296 6 0 0 2435 1 species 172045 Elizabethkingia miricola Elizabethkingia anophelis species 1117645 1 2866 0 Elizabethkingia genomosp. 4 species 1756150 0 881 1 1 922 0 238 species Elizabethkingia meningoseptica Elizabethkingia genomosp. 3 1756149 species 0 1 1175 0 7 5186 1100069 1 order Bacteroidetes Order II. Incertae sedis 56 1 563843 family 6 5130 0 49 Rhodothermaceae 2 1044 0 genus 1 146918 Salinibacter 12 Salinibacter ruber 1032 1 0 146919 species 0 1 1956 no rank 1196022 Rhodothermaceae bacterium RA 1779382 species 1956 1 0 13 Rhodothermus genus 1 29548 2 2081 0 Rhodothermus marinus 0 2068 1 species 29549 phylum 1134404 0 1268 5 Ignavibacteria 5 1268 5 0 class 1 795747 0 1263 4 order 795748 795749 family 1 488 0 genus 795750 0 488 1 Ignavibacterium album 591197 species 0 1 488 Melioribacteraceae 5 3 775 0 1 1334117 family 2 770 0 genus 1 1134403 Melioribacter 2 Melioribacter roseus 0 768 1 1134405 species phylum 1090 11043 22 0 22 11043 0 class 1 191410 Chlorobia 161 Chlorobiales 193 0 21 10882 191411 1 order Chlorobiaceae 40 20 10689 0 1 191412 family Prosthecochloris 16 1969 5 0 1 1101 genus 2632826 no rank 0 3 1350 species 1868325 0 309 1 Prosthecochloris sp. CIB 2401 species 1974213 435 1 0 Prosthecochloris sp. HL-130-GSB 281093 species 0 1 606 Prosthecochloris sp. GSB1 Prosthecochloris aestuarii 603 1 0 1102 species 3 Chloroherpeton 1 100715 genus 2 504 0 1 501 0 100716 species Chloroherpeton thalassium 8 4862 0 no rank 274493 Chlorobium 19 3058 5 0 genus 1 1091 1094 species 1 555 0 Chlorobium phaeovibrioides 1096 species 1276 1 0 Chlorobium phaeobacteroides 0 1 405 337090 species Chlorobium chlorochromatii 1092 species 803 1 0 Chlorobium limicola 0 3 1804 genus 1099 1 Pelodictyon 4 0 791 1 1100 species Pelodictyon luteolum Pelodictyon phaeoclathratiforme 34090 species 0 1009 1 1 256319 genus 4 3314 0 16 Chlorobaculum 883 1 0 species 1097 Chlorobaculum tepidum Chlorobaculum limnaeum species 274537 0 1329 1 Chlorobaculum parvum 1086 1 0 species 274539 142182 phylum 0 2970 8 class 219685 1 0 2970 8 11 Gemmatimonadetes 53 Gemmatimonadales 219686 1 order 0 2959 7 Gemmatimonadaceae 28 2906 6 0 1 219687 family 0 3 1457 genus 173479 1 Gemmatimonas 3 Gemmatimonas phototrophica 1379270 species 1 590 0 Gemmatimonas aurantiaca species 173480 0 1 864 2 1421 0 1 1706036 genus Gemmatirosa 4 Gemmatirosa kalamazoonesis 1 1417 0 species 861299 0 4 1489 phylum 65842 1 204430 class 4 1489 0 12 Fibrobacteria order 218872 3 1477 0 Fibrobacteraceae 3 0 1477 3 204431 1 family genus 1 832 2 1474 0 1 Fibrobacter Fibrobacter succinogenes 1473 1 0 species 833 phylum 456828 250 2 0 2 250 0 1 456826 genus Candidatus Cloacimonas 2 Candidatus Cloacimonas acidaminovorans 456827 species 0 1 248 57723 phylum 20 7785 0 class 1562566 1 0 3 725 2 Blastocatellia 0 723 2 genus 458032 1 Chloracidobacterium 10 458033 species 0 1 713 Chloracidobacterium thermophilum 22 Acidobacteriia 204432 1 class 0 7060 17 62 Acidobacteriales 1 204433 order 12 5701 0 Acidobacteriaceae 67 0 11 5639 204434 1 family 6 Terriglobus genus 1 392733 1708 3 0 Terriglobus saanensis 870903 species 788 1 0 0 914 1 species 392734 Terriglobus roseus 0 968 2 658061 1 genus Candidatus Koribacter 2 Candidatus Koribacter versatilis 0 966 1 658062 species genus 33973 1 0 2 881 10 Acidobacterium Acidobacterium capsulatum species 33075 0 1 871 Granulicella 12 2015 3 0 1 940557 genus Granulicella tundricola 942 1 0 species 940615 1061 1 0 940614 species Granulicella mallensis 58 Solibacterales 1 332160 order 4 1337 0 0 1279 3 332161 1 family Solibacteraceae 22 1 Candidatus Solibacter 1 332162 genus 1257 2 0 332163 species 1256 1 0 Candidatus Solibacter usitatus no rank 2323 263 2 0 1783234 clade 0 263 2 0 97 1 95818 phylum 1895827 no rank 1 97 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 1 97 2056494 species clade 95901 1 166 0 2497643 class 1 166 0 1 166 0 order 2497644 2497645 family 1 166 0 1551504 genus 166 1 0 673862 species 166 1 0 Candidatus Babela massiliensis 0 2902 24 200783 phylum 1 187857 class 2902 24 0 6 Aquificae 1 Desulfurobacteriales order 1485951 1 0 337 4 2 Desulfurobacteriaceae 558314 1 family 0 336 3 genus 171868 0 1 108 species 228745 0 108 1 Thermovibrio ammonificans 226 1 0 64159 genus 0 226 1 species 64160 Desulfurobacterium thermolithotrophum 19 2559 0 32069 order 0 2 179 no rank 90150 genus 1 412592 179 2 0 4 Thermosulfidibacter species 412593 175 1 0 Thermosulfidibacter takaii 0 6 841 family 224027 1 Hydrogenothermaceae 7 1 212790 genus 3 533 0 3 Sulfurihydrogenibium Sulfurihydrogenibium azorense 309806 species 110 1 0 0 1 420 2619248 no rank Sulfurihydrogenibium sp. YO3AOP1 species 436114 0 1 420 2 301 0 genus 1 182899 Persephonella 1 Persephonella marina 300 1 0 309805 species family 64898 11 1539 0 0 119 1 genus 2713 63363 species 0 119 1 Aquifex aeolicus 0 3 183 75905 1 genus Thermocrinis 1 0 1 77 species 136094 Thermocrinis albus Thermocrinis ruber 75906 species 105 1 0 939 genus 1 73 0 Hydrogenobacter thermophilus species 940 0 73 1 Hydrogenobaculum 24 0 1164 6 genus 168657 1 2622382 no rank 1140 5 0 249 1 0 species 547144 Hydrogenobaculum sp. HO 144 1 0 380749 species Hydrogenobaculum sp. Y04AAS1 species 547143 249 1 0 Hydrogenobaculum sp. 3684 547146 species 249 1 0 Hydrogenobaculum sp. SN Hydrogenobaculum sp. SHO 249 1 0 547145 species 200918 phylum 0 42 8051 1 188708 class 42 8051 0 6 Thermotogae 3 Kosmotogales 1643946 1 order 0 429 6 0 5 426 family 1643948 1 Kosmotogaceae 1 0 145 1 1184396 genus Mesotoga prima 1184387 species 0 1 145 0 3 280 genus 651456 1 Kosmotoga 1 Kosmotoga pacifica 1 166 0 1330330 species Kosmotoga olearia species 651457 113 1 0 7 Thermotogales 1 2419 order 6367 28 0 0 10 2200 1643950 1 family Fervidobacteriaceae 15 0 5 967 2420 1 genus Thermosipho 2 2 472 0 2676525 no rank 0 230 1 1462747 species Thermosipho sp. 1063 Thermosipho sp. 1070 242 1 0 1437364 species Thermosipho melanesiensis 195 1 0 species 46541 0 298 1 species 2421 Thermosipho africanus genus 2422 1 0 4 1218 7 Fervidobacterium 832 1 0 93466 species Fervidobacterium pennivorans Fervidobacterium nodosum 1 249 0 2424 species Fervidobacterium islandicum species 2423 0 130 1 3 Thermotogaceae 188709 1 family 0 17 4160 908 5 0 genus 1 1643951 Pseudothermotoga 36 Pseudothermotoga lettingae 177758 species 1 245 0 Pseudothermotoga elfii 238 1 0 38322 species Pseudothermotoga hypogea species 57487 0 1 148 Pseudothermotoga thermarum 0 1 241 119394 species Thermotoga 40 0 11 3249 genus 2335 1 1 162 0 2336 species Thermotoga maritima 2631113 no rank 4 1308 0 Thermotoga sp. 2812B 0 141 1 species 1157948 0 1 245 126740 species Thermotoga sp. RQ2 Thermotoga sp. RQ7 126738 species 1 646 0 species 1157947 1 276 0 Thermotoga sp. Cell2 Thermotoga petrophila 0 1 367 species 93929 species 1508419 190 1 0 Thermotoga caldifontis 1 381 0 93930 species Thermotoga naphthophila 0 597 1 species 2337 Thermotoga neapolitana Thermotoga profunda 1 204 0 species 1508420 order 1643947 0 7 1249 7 1249 0 family 1643949 206 2 0 genus 1 28236 Petrotoga 4 0 202 1 69499 species Petrotoga mobilis 0 2 247 1511648 1 genus Defluviitoga 2 species 1006576 1 245 0 Defluviitoga tunisiensis 0 796 3 160798 1 genus Marinitoga 2 0 333 1 no rank 2640159 species 1545835 0 1 333 Marinitoga sp. 1137 Marinitoga piezophila species 149715 461 1 0 0 55 27830 203691 phylum 63 Spirochaetia 1 203692 class 27830 55 0 481 Spirochaetales 1 136 order 39 21178 0 22 19016 0 family 1 137 Spirochaetaceae 365 935 1 0 genus 1911556 Sediminispirochaeta smaragdinae 935 1 0 species 55206 0 12 12912 157 1 genus Treponema 387 Treponema paraluiscuniculi species 53435 0 37 1 0 1 40 160 species Treponema pallidum Treponema caldarium 1 574 0 215591 species Treponema denticola 1 1054 0 species 158 1663 1 0 no rank 2638727 1539298 species 0 1 1663 Treponema sp. OMZ 838 Treponema putidum 0 1976 1 221027 species Treponema brennaborense 81028 species 0 1106 1 Treponema pedis 617 1 0 species 409322 Treponema azotonutricium 150829 species 868 1 0 0 1045 1 88058 species Treponema primitia species 167 1 3545 0 Treponema succinifaciens Sphaerochaeta 2 4 2073 0 genus 1 399320 species 1131707 0 1 574 Sphaerochaeta pleomorpha 273376 species 1 718 0 Sphaerochaeta coccoides Sphaerochaeta globosa 1 779 0 species 1131703 0 1715 3 146 1 genus Spirochaeta 4 Spirochaeta africana 727 1 0 species 46355 0 1 984 154 species Spirochaeta thermophila 1016 1 0 1616789 genus Salinispira pacifica 0 1016 1 1307761 species 1643685 family 1681 16 0 710 8 0 1 64895 genus Borreliella 30 87 1 0 species 139 Borreliella burgdorferi Borreliella afzelii species 29518 132 1 0 Borrelia mayonii 1674146 species 58 1 0 664662 species 98 1 0 Borreliella bavariensis Borreliella bissettii species 64897 1 40 0 species 62088 1 68 0 Borreliella valaisiana Borreliella garinii species 29519 1 197 0 1 Borrelia 138 1 genus 0 8 971 0 1 141 143 species Borrelia anserina Borrelia hermsii 115 1 0 140 species Borrelia parkeri 141 species 161 1 0 Borrelia duttonii 0 114 1 40834 species Borrelia turicatae species 142 1 196 0 Borrelia miyamotoi 1 133 0 species 47466 Borrelia recurrentis 44449 species 0 1 110 order 1643688 0 2430 8 0 2430 8 family 170 1 Leptospiraceae 1 482 1 0 338321 genus 29510 species 0 482 1 Turneriella parva genus 171 1 0 1947 6 6 Leptospira Leptospira borgpetersenii 174 species 1 367 0 Leptospira interrogans 746 1 0 species 173 species 28452 0 1 302 Leptospira alstonii 28183 species 0 1 267 Leptospira santarosai 259 1 0 172 species Leptospira biflexa order 1643686 1 0 7 4159 3 Brachyspirales 61 Brachyspiraceae 143786 1 family 0 4156 6 Brachyspira 52 5 4095 0 genus 1 29521 Brachyspira intermedia species 84377 1 723 0 0 1537 1 52584 species Brachyspira pilosicoli 1056 1 0 species 159 Brachyspira hyodysenteriae 84378 species 1 727 0 Brachyspira murdochii 8 671 0 phylum 200940 8 671 0 class 1 67799 Thermodesulfobacteria 2 669 7 0 order 188710 14 Thermodesulfobacteriaceae 1 188711 family 669 7 0 1 1740 genus 3 244 0 1 Thermodesulfobacterium Thermodesulfobacterium geofontis 1 169 0 1295609 species species 1741 0 74 1 Thermodesulfobacterium commune 1 171 0 444090 genus species 1653476 0 171 1 Caldimicrobium thiodismutans Thermodesulfatator 1 0 2 240 genus 241192 1 Thermodesulfatator indicus species 171695 239 1 0 0 22 15267 32066 phylum class 1 203490 22 15267 0 3 Fusobacteriia Fusobacteriales 41 0 15264 21 order 203491 1 2 Leptotrichiaceae 1 1129771 family 9 4214 0 genus 32068 0 1 780 Sebaldella termitidis 826 species 1 780 0 Leptotrichia 10 5 2383 0 genus 1 32067 1882 3 0 2633022 no rank Leptotrichia sp. oral taxon 212 0 1 768 712357 species 712368 species 0 560 1 Leptotrichia sp. oral taxon 498 554 1 0 species 1785996 Leptotrichia sp. oral taxon 847 491 1 0 40542 species Leptotrichia buccalis 1 490 0 34104 genus 0 1 490 species 34105 Streptobacillus moniliformis 168808 genus 0 1 559 species 187101 559 1 0 Sneathia amnii 13 Fusobacteriaceae family 1 203492 11 11009 0 417 1 0 genus 167639 Ilyobacter polytropus 0 417 1 167642 species 57 Fusobacterium 1 848 genus 10579 9 0 0 1 369 849 species Fusobacterium gonidiaformans species 851 1 3608 0 Fusobacterium nucleatum 0 1 949 species 1583098 Fusobacterium hwasookii 0 830 1 850 species Fusobacterium mortiferum Fusobacterium varium 0 1247 1 species 856 0 1 682 species 861 Fusobacterium ulcerans Fusobacterium periodonticum 1 2331 0 species 860 0 1 506 species 859 Fusobacterium necrophorum 0 1685 8879064 1783272 clade 99 20601 0 1 544448 phylum Tenericutes 2 Mollicutes 22 0 18447 95 class 31969 1 186329 order 0 12 2868 2146 1 family 0 12 2868 11 Acholeplasmataceae 0 657 6 33926 1 genus Candidatus Phytoplasma 34 85630 species group 116 1 0 Candidatus Phytoplasma mali 0 1 116 species 37692 0 1 148 85632 species group species 59748 0 148 1 Candidatus Phytoplasma australiense 0 3 359 85620 species group Aster yellows witches'-broom phytoplasma species 229545 0 98 1 Maize bushy stunt phytoplasma 1 125 0 202462 species 100379 species 1 136 0 Onion yellows phytoplasma 0 2200 5 2147 1 genus Acholeplasma 38 0 1 562 61635 species Acholeplasma brassicae Acholeplasma laidlawii 437 1 0 2148 species species 35623 567 1 0 Acholeplasma oculi Acholeplasma palmae 38986 species 1 596 0 Entomoplasmatales 14 8586 39 0 order 1 186328 0 2862 14 33925 1 family Entomoplasmataceae 14 20 Entomoplasma 1 46238 genus 5 727 0 Entomoplasma freundtii 74700 species 0 145 1 Entomoplasma somnilux 215578 species 141 1 0 species 214888 1 172 0 Entomoplasma luminosum Entomoplasma melaleucae 1 249 0 81459 species Mesoplasma 59 8 2121 0 1 46239 genus 219745 species 1 177 0 Mesoplasma tabanidae Mesoplasma syrphidae 0 1 448 species 225999 Mesoplasma entomophilum species 2149 0 1 204 185 1 0 216427 species Mesoplasma chauliocola 0 1 555 species 138853 Mesoplasma lactucae Mesoplasma coleopterae species 324078 0 175 1 species 2151 0 1 318 Mesoplasma florum 22 Spiroplasmataceae family 2131 1 0 5710 24 genus 1 2132 5688 23 0 224 Spiroplasma Spiroplasma chrysopicola 216933 species 0 219 1 2136 species 0 171 1 Spiroplasma monobiae Spiroplasma sabaudiense 216944 species 286 1 0 2 472 0 no rank 2637901 species 1914410 236 1 0 Spiroplasma sp. NBRC 100390 1898044 species 1 236 0 Spiroplasma sp. TU-14 2145 species 365 1 0 Spiroplasma taiwanense species 2144 0 250 1 Spiroplasma mirum 1 146 0 species 216934 Spiroplasma corruscae 216942 species 1 208 0 Spiroplasma litorale Spiroplasma atrichopogonis 0 1 272 1114980 species Spiroplasma apis 2137 species 1 117 0 species 216937 0 271 1 Spiroplasma floricola 47834 species 162 1 0 Spiroplasma kunkelii species 315358 0 1 468 Spiroplasma eriocheiris species 2133 1 242 0 Spiroplasma citri 362837 species 1 352 0 Spiroplasma cantharicola Spiroplasma helicoides 216938 species 1 211 0 188 1 0 216946 species Spiroplasma turonicum species 2139 0 1 198 Spiroplasma clarkii Spiroplasma syrphidicola 0 1 175 species 216945 Spiroplasma diminutum species 216936 0 1 209 Spiroplasma culicicola 216935 species 482 1 0 5 Mycoplasmatales order 2085 1 0 6971 43 1 2092 family 42 6966 0 6 Mycoplasmataceae 39 Mycoplasma genus 1 2093 4296 27 0 Mycoplasma canadense 0 1 161 29554 species 1 101 0 species 86660 Mycoplasma dispar Mycoplasma wenyonii 1 16 0 65123 species Mycoplasma bovoculi 45362 species 96 1 0 2118 species 0 1 100 Mycoplasma mobile Mycoplasma genitalium 2097 species 1 64 0 223 1 0 28227 species Mycoplasma penetrans Mycoplasma gallisepticum 156 1 0 species 2096 984991 species 0 88 1 Mycoplasma parvum Mycoplasma flocculare species 2128 0 79 1 26 1 0 2104 species Mycoplasma pneumoniae Mycoplasma haemocanis 136241 species 0 1 65 species group 656088 1300 3 0 0 738 1 species 2102 Mycoplasma mycoides Mycoplasma leachii species 2105 0 1 267 species 2095 1 295 0 Mycoplasma capricolum Mycoplasma hominis species 2098 0 1 273 132 1 0 species 2123 Mycoplasma putrefaciens 29501 species 32 1 0 Mycoplasma haemofelis Mycoplasma suis 1 113 0 57372 species Mycoplasma ovis 0 1 28 species 171632 species 50052 0 1 148 Mycoplasma crocodyli Mycoplasma hyopneumoniae 0 145 1 2099 species 51365 species 0 408 1 Mycoplasma yeatsii 2111 species 0 137 1 Mycoplasma arthritidis Mycoplasma hyorhinis 2100 species 0 93 1 no rank 2683645 0 1 273 273 1 0 1749074 species Mycoplasma sp. (ex Biomphalaria glabrata) 2767358 genus 0 12 2371 species 28903 0 1 517 Mycoplasma bovis Mycoplasma cynos species 171284 1 128 0 Mycoplasma pulmonis species 2107 1 69 0 Mycoplasma bovigenitalium 376 1 0 2112 species species 2110 0 1 249 Mycoplasma agalactiae 2113 species 0 1 149 Mycoplasma californicum Mycoplasma arginini 2094 species 142 1 0 0 102 1 29553 species Mycoplasma bovirhinis Mycoplasma synoviae 0 1 191 species 2109 species 48003 0 1 109 Mycoplasma pullorum Mycoplasma fermentans 2115 species 183 1 0 species 29555 0 1 156 Mycoplasma canis 2129 genus 2 293 0 species 134821 0 164 1 Ureaplasma parvum 0 1 129 2130 species Ureaplasma urealyticum no rank 2799557 1 510 0 genus 1912503 0 510 1 0 510 1 2624196 no rank Candidatus Izimaplasma sp. HR1 species 1541959 510 1 0 no rank 713063 2 1642 0 Tenericutes bacterium MO-XQ 1911684 species 874 1 0 species 1911683 0 768 1 Tenericutes bacterium MZ-XQ 0 11893 45 phylum 200795 1 Chloroflexi 1 301297 1 class 0 9 2376 3 Dehalococcoidia 1 Dehalococcoidales 1 1202465 order 1450 5 0 family 1 1202464 1449 4 0 3 Dehalococcoidaceae Dehalococcoides 1 0 1446 3 61434 1 genus species 61435 0 1193 1 Dehalococcoides mccartyi 1 252 0 237581 no rank 1522671 species 0 252 1 Dehalococcoides sp. UCH007 2 Dehalogenimonas genus 1 670486 3 923 0 Dehalogenimonas lykanthroporepellens 0 1 433 552810 species Dehalogenimonas formicexedens 0 488 1 species 1839801 2201 7 0 1 292625 class Anaerolineae 9 9 Anaerolineales 292629 1 order 0 2192 6 1 292628 family 5 2183 0 71 Anaerolineaceae 968 1 0 1324991 no rank species 1889813 968 1 0 Anaerolineaceae bacterium oral taxon 439 genus 233189 0 1 904 species 167964 0 904 1 Anaerolinea thermophila 0 240 2 2019482 1 genus Brevefilum 1 239 1 0 1986204 species Brevefilum fermentans 1 32061 class 3231 11 0 5 Chloroflexia Chloroflexales 13 0 3226 10 order 32064 1 0 1510 4 1508595 suborder 0 1510 4 family 1508635 1 Roseiflexaceae 5 1 120961 genus 1505 3 0 3 Roseiflexus 2609473 no rank 764 1 0 Roseiflexus sp. RS-1 0 764 1 357808 species 120962 species 1 738 0 Roseiflexus castenholzii 1508594 suborder 0 5 1703 1106 1 family 0 1703 5 1 Chloroflexaceae 1107 1 genus 0 1702 4 22 Chloroflexus 1 1108 species 2 1291 0 649 Chloroflexus aurantiacus 1 642 0 strain 480224 Chloroflexus sp. Y-400-fl 1 389 0 152260 species Chloroflexus aggregans Ardenticatenia 59 2111 5 0 class 1 1382928 2052 4 0 1 1382929 order Ardenticatenales 32 18 Ardenticatenaceae family 1382930 1 0 3 2020 genus 1 1988031 2 2002 0 21 Candidatus Promineofilum species 1806508 1981 1 0 Candidatus Promineofilum breve 189775 1 class 0 8 1046 9 Thermomicrobia subclass 85000 0 4 739 Sphaerobacterales 16 0 4 739 85001 1 order 723 3 0 suborder 255728 Sphaerobacteraceae 20 723 3 0 family 1 85002 genus 2056 1 0 2 703 14 Sphaerobacter Sphaerobacter thermophilus 0 689 1 2057 species Thermomicrobiales 6 3 298 0 order 1 189776 family 1 189777 292 2 0 4 Thermomicrobiaceae 499 genus 1 288 0 0 288 1 500 species Thermomicrobium roseum Caldilineae 4 927 4 0 1 475962 class Caldilineales 11 0 3 923 475963 1 order 2 Caldilineaceae 475964 1 family 0 912 2 0 910 1 233191 genus 133453 species 1 910 0 Caldilinea aerophila 0 2 381 1859062 no rank Thermobaculum 15 0 381 2 262406 1 genus 1 366 0 species 166501 Thermobaculum terrenum 0 624258 644 201174 1 phylum Actinobacteria 69 14 Rubrobacteria class 84995 1 0 1797 6 84996 1 order 0 5 1783 24 Rubrobacterales family 1 84997 1759 4 0 37 Rubrobacteraceae 54 Rubrobacter 42255 1 genus 0 3 1722 Rubrobacter xylanophilus 1217 1 0 species 49319 1 451 0 42256 species Rubrobacter radiotolerans 1 84998 class 31 97208 0 387 Coriobacteriia Coriobacteriales 176 0 18927 13 order 84999 1 84107 1 family 0 10051 6 1132 Coriobacteriaceae genus 1 33870 2 1126 0 3 Coriobacterium Coriobacterium glomerans 0 1123 1 33871 species 2 5305 0 1 102106 genus Collinsella 26 Collinsella aerofaciens 0 1 5279 species 74426 1 2488 0 84113 no rank 1 2488 0 species 1531429 Coriobacteriaceae bacterium 68-1-3 family 1 1643824 8700 6 0 207 Atopobiaceae 1 595 0 genus 2767353 Atopobium parvulum 1 595 0 species 1382 68 Olsenella genus 1 133925 4 7898 0 0 2410 1 species 133926 Olsenella uli no rank 2638792 1492 1 0 Olsenella sp. oral taxon 807 712411 species 1 1492 0 0 1 3928 species 1805478 Olsenella sp. Marseille-P2300 438 Eggerthellales order 1 1643822 77894 17 0 8697 Eggerthellaceae 1 1643826 family 77456 16 0 1981050 genus 1 839 0 1944646 species 0 1 839 Phoenicibacter massiliensis 46 Gordonibacter 1 644652 genus 10624 3 0 1841863 species 1 4319 0 Gordonibacter massiliensis 1 6259 0 1335613 species Gordonibacter urolithinfaciens 1 Cryptobacterium 1 84162 genus 328 2 0 Cryptobacterium curtum 327 1 0 species 84163 1 79603 genus 1598 2 0 1 Denitrobacterium Denitrobacterium detoxificans 0 1 1597 79604 species 84108 1 genus 0 3546 2 19 Slackia Slackia heliotrinireducens species 84110 3527 1 0 118 Eggerthella genus 1 84111 47639 3 0 84112 species 0 1 44730 Eggerthella lenta 0 1 2791 2648737 no rank species 502558 1 2791 0 Eggerthella sp. YY7918 genus 1 447020 4185 2 0 2 Adlercreutzia Adlercreutzia equolifaciens 0 1 4183 species 446660 1760 1 class 0 590 522919 3037 Actinobacteria 1643818 no rank 580 1 0 0 1 580 genus 147067 Thermobispora bispora 0 580 1 2006 species 622450 order 2 548 0 622451 family 548 2 0 genus 1849 1 0 2 548 4 Actinopolyspora Actinopolyspora erythraea species 414996 1 544 0 13 Frankiales order 85013 1 0 7 3530 74712 1 family 0 6 3517 29 Frankiaceae 33 Frankia 1 1854 genus 3488 5 0 0 1 1059 2632575 no rank 1059 1 0 298653 species Frankia sp. EAN1pec 106370 species 1 511 0 Frankia casuarinae Frankia alni 1859 species 0 1 795 298654 species 1090 1 0 Frankia inefficax Candidatus Nanopelagicales 3 0 12 1284 2039638 1 order 2162846 family 1281 11 0 12 Candidatus Planktophila 1 622681 genus 7 1008 0 1 158 0 573600 species Candidatus Planktophila limnetica 0 1 121 species 1884907 Candidatus Planktophila vernalis 1884914 species 186 1 0 Candidatus Planktophila dulcis Candidatus Planktophila sulfonica 0 110 1 1884904 species Candidatus Planktophila versatilis 0 1 221 1884905 species Candidatus Planktophila lacus 1884913 species 1 200 0 Candidatus Nanopelagicus 1 4 273 0 genus 1 2039639 Candidatus Nanopelagicus limnes species 1884634 0 103 1 1884915 species 0 1 51 Candidatus Nanopelagicus hibericus Candidatus Nanopelagicus abundans 1884916 species 0 1 118 85012 1 order 0 10187 16 39 Streptosporangiales Nocardiopsaceae 79 7 4582 0 family 1 83676 2013 1 genus 0 4 3605 29 Nocardiopsis Nocardiopsis alba 0 876 1 species 53437 1186 1 0 species 280236 Nocardiopsis gilva Nocardiopsis dassonvillei 2014 species 0 1514 1 1 Thermobifida genus 83677 1 0 898 2 897 1 0 species 2021 Thermobifida fusca 1 2004 family 5 3881 0 59 Streptosporangiaceae Streptosporangium 16 1533 2 0 1 2000 genus 0 1517 1 2001 species Streptosporangium roseum 20 Nonomuraea genus 1 83681 2289 2 0 no rank 2593643 1 2269 0 Nonomuraea sp. ATCC 55076 0 2269 1 1909395 species Thermomonosporaceae 23 3 1685 0 1 2012 family Thermomonospora 39 1662 2 0 1 2019 genus Thermomonospora curvata 2020 species 0 1623 1 1643684 1 order 0 4 1031 5 Nakamurellales Nakamurellaceae 24 1026 3 0 family 1 85031 8 Nakamurella 53460 1 genus 0 2 1002 0 994 1 53461 species Nakamurella multipartita 1 197 0 52018 no rank Actinobacteria bacterium IMCC26256 197 1 0 1650658 species 848 4 0 order 1 622452 Kineosporiales 1 Kineosporiaceae 16 0 3 847 83778 1 family Kineococcus 16 0 831 2 33981 1 genus Kineococcus radiotolerans species 131568 0 1 815 order 1 1643682 3350 8 0 4 Geodermatophilales Geodermatophilaceae 36 3346 7 0 1 85030 family 770 2 0 genus 1 38501 Blastococcus 6 Blastococcus saxobsidens 138336 species 1 764 0 88138 1 genus 0 1470 2 16 Modestobacter species 477641 0 1 1454 Modestobacter marinus 2 1070 0 genus 1 1860 Geodermatophilus 6 1861 species 1 1064 0 Geodermatophilus obscurus 90 Bifidobacteriales order 85004 1 0 168027 25 0 24 167937 31953 1 family Bifidobacteriaceae 6238 0 287 1 genus 196081 Scardovia inopinata 78259 species 0 287 1 Bifidobacterium 918 0 19 159977 1678 1 genus 0 1 2682 species 1680 Bifidobacterium adolescentis Bifidobacterium longum 0 82758 1 216816 species 1 1686 species 5678 2 0 2595 Bifidobacterium catenulatum 630129 subspecies 3083 1 0 Bifidobacterium kashiwanohense Bifidobacterium thermophilum 0 1 1216 33905 species species 158787 1891 1 0 Bifidobacterium scardovii Bifidobacterium bifidum species 1681 0 19476 1 Bifidobacterium pseudocatenulatum species 28026 2376 1 0 35760 species 0 1229 1 Bifidobacterium choerinum 1 1773 0 species 1683 Bifidobacterium angulatum 1685 species 1 33129 0 Bifidobacterium breve Bifidobacterium dentium 1689 species 1457 1 0 0 1 910 1684 species Bifidobacterium asteroides 0 1 410 species 1687 Bifidobacterium coryneforme Bifidobacterium actinocoloniiforme species 638619 1 696 0 Bifidobacterium animalis 1 1344 0 28025 species 1694 species 1469 1 0 Bifidobacterium pseudolongum Bifidobacterium indicum 0 1 565 1691 species 0 2 621 genus 2701 1 Gardnerella 1 species 2702 0 1 620 Gardnerella vaginalis genus 196082 814 1 0 Parascardovia denticolens species 78258 1 814 0 85010 1 order 0 41 31596 103 Pseudonocardiales 0 31493 40 family 2070 1 Pseudonocardiaceae 409 Amycolatopsis 106 0 8510 7 1813 1 genus Amycolatopsis orientalis 0 1 2194 31958 species Amycolatopsis methanolica 1814 species 1119 1 0 2205 2 0 no rank 2618356 1 1083 0 1896961 species Amycolatopsis sp. AA4 Amycolatopsis sp. BJA-103 1911175 species 0 1122 1 species 208439 1168 1 0 Amycolatopsis japonica Amycolatopsis mediterranei species 33910 0 1718 1 genus 1 2029 1211 2 0 1 Kibdelosporangium 860235 species 0 1 1210 Kibdelosporangium phytohabitans 0 2 1233 2071 1 genus Saccharothrix 8 Saccharothrix espanaensis 1 1225 0 103731 species 3 Alloactinosynnema genus 1 674734 917 2 0 0 1 914 2636053 no rank Alloactinosynnema sp. L-07 1653480 species 914 1 0 genus 142577 1 0 648 2 2 Prauserella Prauserella marina species 530584 0 1 646 Actinoalloteichus 51 6 4036 0 genus 1 65496 species 1470176 0 1 819 Actinoalloteichus hoggarensis 2644606 no rank 1663 2 0 species 2072503 862 1 0 Actinoalloteichus sp. AHMU CJ021 Actinoalloteichus sp. GBA129-24 1612551 species 1 801 0 340345 species 0 666 1 Actinoalloteichus hymeniacidonis 1612552 species 1 837 0 Actinoalloteichus sp. ADI127-7 10 Saccharopolyspora 1 1835 genus 2 1410 0 Saccharopolyspora erythraea 1836 species 0 1 1400 genus 43356 1 0 2082 2 9 Kutzneria 0 1 2073 43357 species Kutzneria albida 0 6059 8 genus 1847 1 Pseudonocardia 137 0 939 1 species 240495 Pseudonocardia dioxanivorans 6 4983 0 no rank 2619320 0 1 958 species 1688404 Pseudonocardia sp. EC080610-09 1 831 0 1096868 species Pseudonocardia sp. EC080625-04 0 1 697 species 1690815 Pseudonocardia sp. HH130630-07 1 684 0 1641402 species Pseudonocardia sp. HH130629-09 Pseudonocardia sp. EC080619-01 species 1096856 0 1 973 0 1 840 species 445576 Pseudonocardia sp. AL041005-10 25 Lentzea 165301 1 genus 0 1298 2 1 1273 0 species 1586287 Lentzea guizhouensis 44 Actinosynnema 40566 1 genus 0 3 3225 Actinosynnema mirum 0 1449 1 40567 species 42197 species 0 1732 1 Actinosynnema pretiosum 455 1 0 1851 genus species 1852 455 1 0 Saccharomonospora viridis 2037 1 order 0 11750 20 19 Actinomycetales 1 2049 family 19 11731 0 910 Actinomycetaceae Arcanobacterium 1 0 460 2 genus 28263 1 0 1 459 28264 species Arcanobacterium haemolyticum 4 Actinotignum 1653174 1 genus 0 2 430 1 426 0 59505 species Actinotignum schaalii Trueperella 10 0 1188 2 1069494 1 genus Trueperella pyogenes 1661 species 0 1 1178 genus 2529408 818 1 0 Actinomyces meyeri 0 818 1 52773 species Actinomyces 92 9 6323 0 genus 1 1654 1912795 species 0 1 142 Actinomyces sp. VUL4_3 Actinomyces oris 0 936 1 544580 species Actinomyces gaoshouyii species 1960083 1 763 0 Actinomyces radicidentis 0 877 1 species 111015 3 2797 0 2609248 no rank Actinomyces sp. oral taxon 897 0 1 885 species 2081702 Actinomyces sp. oral taxon 414 712122 species 0 1069 1 Actinomyces sp. Chiba101 843 1 0 species 1851395 Actinomyces pacaensis 1852377 species 0 1 716 2050 1 genus 0 1602 2 50 Mobiluncus species 2051 0 1552 1 Mobiluncus curtisii 18741 34 0 order 1 85009 Propionibacteriales 127 13 6489 0 family 1 85015 Nocardioidaceae 147 Nocardioides 83 0 2803 4 genus 1839 1 Nocardioides sp. 78 species 2045452 0 935 1 Nocardioides dokdonensis 912 1 0 species 450734 0 1 873 no rank 2615069 Nocardioides sp. JS614 species 196162 873 1 0 genus 182639 1 0 2 1028 34 Kribbella Kribbella flavida 0 994 1 species 182640 1 2044 genus 2 906 0 8 Pimelobacter 2045 species 898 1 0 Pimelobacter simplex Micropruina 6 0 969 2 116071 1 genus 75385 species 0 963 1 Micropruina glycogenica 1 2040 genus 2 636 0 15 Aeromicrobium Aeromicrobium erythreum 0 621 1 2041 species 20 12125 0 family 1 31957 Propionibacteriaceae 190 Propionimicrobium 3 2 1698 0 1 203133 genus 0 1695 1 no rank 2633994 species 1871034 1695 1 0 Propionimicrobium sp. Marseille-P3275 0 2 503 29404 1 genus Microlunatus 6 29405 species 497 1 0 Microlunatus phosphovorus Tessaracoccus 34 0 5 3902 genus 72763 1 2635419 no rank 0 1026 1 Tessaracoccus sp. T2.5-30 0 1 1026 species 1909732 0 811 1 399497 species Tessaracoccus flavescens 0 1160 1 species 1332264 Tessaracoccus aquimaris Tessaracoccus flavus 1610493 species 0 1 871 genus 2801844 549 1 0 0 549 1 1750 species Pseudopropionibacterium propionicum 12 Acidipropionibacterium genus 1 1912215 1154 2 0 1 1142 0 species 1748 Acidipropionibacterium acidipropionici 24 Propionibacterium genus 1743 1 0 2191 3 0 1 296 2608905 no rank Propionibacterium sp. oral taxon 193 species 671223 0 1 296 Propionibacterium freudenreichii 1744 species 1 1871 0 1912216 1 genus 0 4 1938 12 Cutibacterium Cutibacterium avidum 0 1 911 33010 species 1 466 0 33011 species Cutibacterium granulosum 1747 species 549 1 0 Cutibacterium acnes 0 4 1664 414714 1 order Catenulisporales 34 family 1 414877 3 1630 0 13 Catenulisporaceae 0 1617 2 414878 1 genus Catenulispora 31 Catenulispora acidiphila species 304895 1 1586 0 order 1 85006 138 64337 0 538 Micrococcales 85018 1 family 0 309 2 5 Dermatophilaceae genus 1862 1 304 0 Dermatophilus congolensis species 1863 0 1 304 1 85020 family 4962 10 0 108 Dermabacteraceae 2 246 0 1 472568 genus Devriesea 2 Devriesea agamarum 472569 species 1 244 0 36739 genus 0 431 1 0 1 431 species 1630135 Dermabacter vaginalis 6 4177 0 1 43668 genus Brachybacterium 73 Brachybacterium sp. VR2415 0 740 1 2017485 species 1 1005 0 species 2017484 Brachybacterium sp. VM2412 1 792 0 43669 species Brachybacterium faecium Brachybacterium ginsengisoli 1331682 species 0 662 1 no rank 2623841 0 1 905 Brachybacterium sp. P6-10-X1 species 1903186 905 1 0 1 85023 family 20680 44 0 230 Microbacteriaceae Clavibacter 276 0 2521 6 genus 1573 1 0 5 2245 species 28447 1 Clavibacter michiganensis 494 1874630 subspecies 0 479 1 Clavibacter capsici Clavibacter sepedonicus 31964 subspecies 1 414 0 0 456 1 33014 subspecies Clavibacter insidiosus Clavibacter nebraskensis subspecies 31963 402 1 0 1434032 genus 1 149 0 0 149 1 1159327 species Pontimonas salivibrio 0 2064 3 genus 69578 1 Cryobacterium 18 1 961 0 670052 species Cryobacterium arcticum 1 1085 0 no rank 2649013 Cryobacterium sp. LW097 0 1085 1 species 1978566 Leifsonia 13 0 2 1338 genus 110932 1 Leifsonia xyli species 1575 1325 1 0 13 Rathayibacter 33886 1 genus 0 3 554 Rathayibacter tritici 278 1 0 species 33888 species 145458 0 1 263 Rathayibacter toxicus 154 Microbacterium genus 1 33882 14 8420 0 species 162426 0 1 769 Microbacterium hominis 36805 species 0 1 585 Microbacterium aurum species 84292 0 1 528 Microbacterium chocolatum 2609290 no rank 4961 8 0 Microbacterium sp. str. 'China' 1 515 0 species 2103230 Microbacterium sp. TPU 3598 species 1938334 0 538 1 0 1 869 1795053 species Microbacterium sp. PAMC 28756 0 1 634 species 1714373 Microbacterium sp. No. 7 0 445 1 1696072 species Microbacterium sp. CGR1 Microbacterium sp. BH-3-3-3 1 700 0 species 1906742 Microbacterium sp. 1.5R 462 1 0 1916917 species Microbacterium sp. XT11 1 798 0 367477 species Microbacterium paludicola species 300019 0 1 800 2033 species 0 623 1 Microbacterium testaceum 1655488 no rank 0 300 2 300 2 0 1655489 clade 0 2 300 genus 529883 Candidatus Rhodoluna planktonica 0 103 1 species 535712 Rhodoluna lacicola 529884 species 197 1 0 1 635 0 genus 1759331 Cnuibacter physcomitrellae 1619308 species 0 635 1 723 2 0 genus 1 33877 Agromyces 1 453304 species 1 722 0 Agromyces aureus 0 1 681 447237 genus no rank 2626248 0 1 681 681 1 0 species 1795630 Frondihabitans sp. PAMC 28766 Curtobacterium 70 0 1680 4 2034 1 genus no rank 257496 2 1165 0 0 639 1 species 1561023 Curtobacterium sp. MR_MD2014 species 1905847 0 1 526 Curtobacterium sp. BH-2-1-1 Curtobacterium pusillum 69373 species 1 445 0 1 181 0 genus 1705353 181 1 0 species 708131 Aurantimicrobium minutum 1 463 0 337004 genus Microcella alkaliphila 0 463 1 279828 species 3 Microterricola 518733 1 genus 0 741 2 species 412690 738 1 0 Microterricola viridarii Brevibacteriaceae 7 0 1014 3 85019 1 family genus 1 1696 2 1007 0 2 Brevibacterium 1703 species 1 1005 0 Brevibacterium linens 39 1 0 577468 no rank 2038 genus 0 39 1 2039 species 0 1 39 Tropheryma whipplei 0 793 3 family 145360 1 Sanguibacteraceae 12 3 Sanguibacter 60919 1 genus 0 2 781 0 778 1 species 60920 Sanguibacter keddieii 2 Beutenbergiaceae 125316 1 family 0 686 3 Beutenbergia 1 684 2 0 1 84756 genus Beutenbergia cavernae species 84757 0 1 683 85022 family 2 108 0 1 Jonesia genus 43673 1 0 2 108 Jonesia denitrificans 1 107 0 43674 species 6 2438 0 1 85016 family Cellulomonadaceae 16 0 5 2422 genus 1707 1 Cellulomonas 57 2620175 no rank 0 1 542 2003551 species 542 1 0 Cellulomonas sp. PSBB021 0 546 1 11 species Cellulomonas gilvus species 1711 0 1 662 Cellulomonas flavigena 1708 species 0 1 615 Cellulomonas fimi 42 Dermacoccaceae family 1 145357 7 1770 0 Kytococcus 12 0 659 2 57499 1 genus Kytococcus sedentarius species 1276 1 647 0 genus 1 745364 600 2 0 9 Luteipulveratus 591 1 0 species 571913 Luteipulveratus mongoliensis 469 2 0 genus 1 57495 Dermacoccus 3 species 1274 0 466 1 Dermacoccus nishinomiyaensis Intrasporangiaceae 29 3069 9 0 family 1 85021 0 462 2 genus 53357 1 Intrasporangium 9 0 1 453 species 53358 Intrasporangium calvum 53457 1 genus 0 654 2 72 Janibacter Janibacter indicus 1 582 0 857417 species 32 Serinicoccus genus 265976 1 0 879 2 0 847 1 species 1758689 Serinicoccus sp. JLT9 2 1045 0 genus 1 267408 Arsenicicoccus 26 0 1019 1 2663846 no rank 0 1 1019 1658671 species Arsenicicoccus sp. oral taxon 190 0 9 3938 85017 1 family Promicromonosporaceae 58 254250 1 genus 0 3 1428 11 Isoptericola 710 1 0 372663 species Isoptericola dokdonensis Isoptericola variabilis 139208 species 707 1 0 1 157920 genus 3 1327 0 17 Cellulosimicrobium 2624466 no rank 0 1 663 Cellulosimicrobium sp. TH-20 1980001 species 0 663 1 Cellulosimicrobium cellulans 1 647 0 species 1710 Xylanimonas 6 0 1125 2 genus 186188 1 0 1119 1 186189 species Xylanimonas cellulosilytica 1774 Micrococcaceae 1268 1 family 0 38 23993 1663 1 genus 0 11760 15 229 Arthrobacter Arthrobacter alpinus species 656366 0 1190 1 Arthrobacter crystallopoietes 37928 species 0 1 1065 235627 no rank 0 12 9276 Arthrobacter sp. YN 1 571 0 species 2020486 species 1357915 0 708 1 Arthrobacter sp. QXT-31 0 1048 1 1652545 species Arthrobacter sp. YC-RL1 Arthrobacter sp. PGP41 1 1031 0 species 2079227 1704044 species 1 792 0 Arthrobacter sp. ERGS1:01 Arthrobacter sp. ATCC 21022 1771959 species 1 516 0 Arthrobacter sp. Rue61a species 1118963 1 521 0 Arthrobacter sp. FB24 290399 species 0 1 836 species 1849032 657 1 0 Arthrobacter sp. U41 Arthrobacter sp. ZXY-2 species 1806905 557 1 0 Arthrobacter sp. LS16 1690248 species 0 1142 1 1494608 species 0 1 897 Arthrobacter sp. PAMC 25486 Sinomonas 1 0 688 2 596707 1 genus 1 687 0 37927 species Sinomonas atrocyanea 1868332 genus 337 1 0 Neomicrococcus aestuarii 0 337 1 556325 species Glutamicibacter 7 1193 2 0 1 1742989 genus 256701 species 1186 1 0 Glutamicibacter arilaitensis 1645 genus 0 1 209 Renibacterium salmoninarum 0 209 1 1646 species 4 1985 0 1 57493 genus Kocuria 63 species 446860 1 614 0 Kocuria flava 0 1 660 species 72000 Kocuria rhizophila 71999 species 0 1 648 Kocuria palustris 4 2582 0 genus 1 1742993 Pseudarthrobacter 21 Pseudarthrobacter chlorophenolicus 0 823 1 85085 species Pseudarthrobacter phenanthrenivorans 0 1 818 species 361575 1 920 0 species 121292 Pseudarthrobacter sulfonivorans 23 Micrococcus genus 1 1269 2 994 0 971 1 0 1270 species Micrococcus luteus Paenarthrobacter 2 797 2 0 genus 1 1742992 species 43663 0 795 1 Paenarthrobacter aurescens genus 2078575 241 1 0 1 241 0 1618207 species Arthrobacter sp. IHBB 11108 0 3 1433 genus 32207 1 Rothia 3 species 43675 0 1 917 Rothia mucilaginosa Rothia dentocariosa 2047 species 1 513 0 4 1063 0 order 1 85014 Glycomycetales 2 32 Glycomycetaceae family 1 85034 1061 3 0 19 Stackebrandtia genus 1 283810 1029 2 0 0 1010 1 species 283811 Stackebrandtia nassauensis Streptomycetales 389 93564 82 0 order 1 85011 1 2062 family 93175 81 0 647 Streptomycetaceae Streptomyces 3195 75 87131 0 1 1883 genus Streptomyces lydicus 47763 species 1 3083 0 Streptomyces rubrolavendulae 0 842 1 285473 species Streptomyces albus 1 2308 0 1888 species 553510 species 0 1 928 Streptomyces gilvosporeus Streptomyces lavendulae 983 1 0 species 1914 Streptomyces venezuelae 54571 species 1567 1 0 Streptomyces glaucescens species 1907 0 1 959 362257 species 0 961 1 Streptomyces vietnamensis 1616117 species 0 1 754 Streptomyces formicae no rank 2593676 0 24 25707 621 1 0 1649184 species Streptomyces sp. CFMR 7 0 1047 1 species 1561022 Streptomyces sp. CCM_MD2014 1661694 species 0 750 1 Streptomyces sp. Tue 6075 1 1193 0 species 1265601 Streptomyces sp. PAMC 26508 465541 species 1 1117 0 Streptomyces sp. Mg1 1054 1 0 species 1964449 Streptomyces sp. 3211 Streptomyces sp. TN58 species 234612 1 983 0 Streptomyces sp. WAC00288 2094021 species 0 1022 1 1 1201 0 1972846 species Streptomyces sp. Sge12 1849967 species 0 965 1 Streptomyces sp. SAT1 Streptomyces sp. P3 0 960 1 2135430 species Streptomyces sp. RTd22 0 1710 1 species 1841249 Streptomyces sp. S8 727 1 0 1837283 species Streptomyces sp. CdTB01 0 1 1122 1725411 species Streptomyces sp. 769 1262452 species 1321 1 0 Streptomyces sp. CNQ-509 0 1056 1 444103 species Streptomyces sp. CLI2509 species 1984801 1 968 0 Streptomyces sp. SirexAA-E 862751 species 0 703 1 Streptomyces sp. FR-008 206662 species 1 1221 0 Streptomyces sp. fd1-xmd 1 1208 0 1812480 species 2059884 species 0 1 1172 Streptomyces sp. CMB-StM0423 1431 1 0 1495638 species Streptomyces sp. M56 1 1139 0 species 1961713 Streptomyces sp. MOE7 0 1 1016 1751294 species Streptomyces sp. 4F species 1355015 0 756 1 Streptomyces pluripotens Streptomyces cattleya 1 1671 0 species 29303 Streptomyces sp. XZHG99 2049881 species 766 1 0 68192 species 0 968 1 Streptomyces cyaneogriseus Streptomyces parvulus 1 998 0 species 146923 2201 1 0 68249 species Streptomyces pactum Streptomyces lincolnensis species 1915 0 1 1387 629295 species group 0 2 1830 1058 1 0 1482596 species subgroup Streptomyces griseus 0 1 1058 species 1911 772 1 0 species subgroup 1482558 1908 species 772 1 0 Streptomyces globisporus species 1889 0 994 1 Streptomyces ambofaciens Streptomyces violaceoruber species 1935 872 1 0 1437453 species 0 966 1 Streptomyces leeuwenhoekii 0 664 1 species 193462 Streptomyces niveus Streptomyces xiamenensis 408015 species 1125 1 0 Streptomyces lividans species 1916 0 1 864 Streptomyces albireticuli 986 1 0 species 1940 Streptomyces puniciscabiei species 164348 0 1 1194 Streptomyces griseochromogenes 1103 1 0 68214 species Streptomyces alfalfae 0 1 1359 species 1642299 species 1912 0 3107 1 Streptomyces hygroscopicus Streptomyces pratensis 1169025 species 1 856 0 Streptomyces bingchenggensis 1 1538 0 species 379067 1930 species 1 885 0 Streptomyces scabiei Streptomyces albulus 1 1014 0 species 68570 Streptomyces alboflavus 67267 species 1 1253 0 Streptomyces malaysiensis 92644 species 1214 1 0 species 68202 610 1 0 Streptomyces fulvissimus 1118 1 0 species 38300 Streptomyces pristinaespiralis 1178 1 0 1926 species Streptomyces reticuli Streptomyces peucetius 1950 species 1053 1 0 0 2 2087 1477431 species group Streptomyces coelicolor 0 978 1 1902 species 1109 1 0 species 42239 Streptomyces sampsonii Streptomyces avermitilis 33903 species 0 1 885 68280 species 0 1561 1 Streptomyces violaceusniger Streptomyces noursei species 1971 0 937 1 species 1901 0 830 1 Streptomyces clavuligerus Streptomyces chartreusis species 1969 932 1 0 0 1 1382 75293 species Streptomyces autolyticus Streptomyces collinus 1 753 0 42684 species 1038928 species 1 901 0 Streptomyces xinghaiensis Streptomyces sp. S10(2016) species 1783515 1 1046 0 53 Kitasatospora 2063 1 genus 0 5 5397 977 1 0 68173 species Kitasatospora albolonga Kitasatospora aureofaciens species 1894 0 1228 1 no rank 2633591 0 1 1665 Kitasatospora sp. MMS16-BH015 0 1 1665 species 2018025 Kitasatospora setae species 2066 0 1 1474 1 85007 order 163 91310 0 735 Corynebacteriales 248 Corynebacteriaceae 1653 1 family 0 28056 52 549 Corynebacterium 1 1716 genus 51 27808 0 species 575200 475 1 0 Corynebacterium maris Corynebacterium stationis species 1705 324 1 0 Corynebacterium lactis 1 554 0 species 1231000 Corynebacterium mustelae 1 191 0 species 571915 0 521 1 species 1721 Corynebacterium callunae 35757 species 0 1 161 Corynebacterium cystitidis 156978 species 0 1 501 Corynebacterium imitans 2624378 no rank 838 2 0 Corynebacterium sp. ATCC 6931 1487956 species 1 326 0 Corynebacterium sp. NML98-0116 702967 species 0 1 512 species 1652495 1 269 0 Corynebacterium crudilactis Corynebacterium sphenisci 1 831 0 191493 species Corynebacterium terpenotabidum 0 1 509 species 89154 0 798 1 1718 species Corynebacterium glutamicum Corynebacterium glaucum 0 1 438 187491 species species 1697 0 1 455 Corynebacterium ammoniagenes Corynebacterium uterequi 0 403 1 species 1072256 Corynebacterium atypicum species 191610 1 378 0 species 1121358 0 1 506 Corynebacterium doosanense Corynebacterium epidermidicanis 0 281 1 1050174 species 0 527 1 161896 species Corynebacterium camporealensis 453 1 0 65058 species Corynebacterium ulcerans Corynebacterium jeikeium 1005 1 0 38289 species Corynebacterium humireducens 1223514 species 0 1 997 Corynebacterium aquilae 0 434 1 203263 species Corynebacterium simulans species 146827 0 769 1 349751 species 0 869 1 Corynebacterium marinum 1 501 0 species 43771 Corynebacterium urealyticum Corynebacterium aurimucosum species 169292 1 610 0 Corynebacterium phocae 0 355 1 species 161895 1719 species 239 1 0 Corynebacterium pseudotuberculosis Corynebacterium striatum 0 1 1196 species 43770 Corynebacterium diphtheriae 0 394 1 species 1717 species 92706 0 417 1 [Brevibacterium] flavum Corynebacterium casei 0 1 426 species 160386 Corynebacterium singulare species 161899 578 1 0 1 81 0 species 35755 Corynebacterium kutscheri 0 1230 1 38305 species Corynebacterium vitaeruminis 1 682 0 152794 species Corynebacterium efficiens 1404244 species 0 750 1 Corynebacterium glyciniphilum species 108486 0 1 1145 Corynebacterium falsenii 0 698 1 species 1727 Corynebacterium variabile species 258224 0 1 288 Corynebacterium resistens 330 1 0 28028 species Corynebacterium flavescens species 225326 0 815 1 Corynebacterium halotolerans Corynebacterium testudinoris 0 686 1 species 136857 Corynebacterium frankenforstense 1 656 0 1230998 species 0 414 1 161879 species Corynebacterium kroppenstedtii 1 264 0 42817 species Corynebacterium argentoratense 0 1 578 1408191 species Corynebacterium deserti 401472 species 1 439 0 Corynebacterium ureicelerivorans no rank 697024 258 2 0 6 Lawsonella genus 1847725 1 0 258 2 Lawsonella clevelandensis 1528099 species 0 1 252 Gordoniaceae 181 4201 9 0 family 1 85026 Gordonia 83 0 8 4020 2053 1 genus Gordonia terrae species 2055 599 1 0 no rank 2657482 2 1143 0 0 1 535 species 2059875 Gordonia sp. YC-JH1 0 608 1 337191 species Gordonia sp. KTR9 1136941 species 669 1 0 Gordonia phthalatica 0 573 1 84595 species Gordonia polyisoprenivorans 0 539 1 species 1004901 Gordonia iterans 1 414 0 species 2054 Gordonia bronchialis 4 903 0 family 1 85029 Dietziaceae 1 37914 1 genus 0 3 902 7 Dietzia Dietzia timorensis species 499555 324 1 0 2617939 no rank 0 1 571 Dietzia sp. oral taxon 368 712270 species 571 1 0 16 Tsukamurellaceae family 1 85028 1673 4 0 0 1657 3 2060 1 genus Tsukamurella 23 Tsukamurella paurometabola 2061 species 1 398 0 Tsukamurella tyrosinosolvens species 57704 1236 1 0 85025 1 family 0 31 22203 134 Nocardiaceae genus 1817 1 0 8843 7 154 Nocardia 37329 species 0 1249 1 Nocardia farcinica 1 931 0 455432 species Nocardia terpenica Nocardia brasiliensis 37326 species 1736 1 0 Nocardia seriolae 37332 species 0 1 1446 2162 1 0 species 135487 Nocardia cyriacigeorgica Nocardia nova species 37330 1 1165 0 1 1827 genus 23 13226 0 508 Rhodococcus 634 1 0 43767 species Rhodococcus hoagii 191292 species 1 638 0 Rhodococcus aetherivorans 1828 species 1 473 0 Rhodococcus fascians 0 376 1 1829 species Rhodococcus rhodochrous Rhodococcus opacus species 37919 0 1 1695 192944 no rank 0 5756 12 Rhodococcus sp. 2G 0 427 1 species 1570939 0 1 461 species 1805827 Rhodococcus sp. MTM3W5.2 0 1 690 species 935199 Rhodococcus sp. p52 Rhodococcus sp. H-CA8f 1727214 species 0 512 1 Rhodococcus sp. WMMA185 species 679318 0 304 1 326 1 0 1045808 species Rhodococcus sp. YL-1 1723645 species 0 1 358 Rhodococcus sp. 008 Rhodococcus sp. PBTS 2 1 477 0 1653479 species 1564114 species 0 1 614 Rhodococcus sp. B7740 species 1033922 1 709 0 Rhodococcus sp. WB1 Rhodococcus sp. BH4 318 1 0 species 1807790 species 1653478 0 560 1 Rhodococcus sp. PBTS 1 1 838 0 1830 species Rhodococcus ruber 0 869 1 132919 species Rhodococcus jostii Rhodococcus erythropolis species 1833 578 1 0 103816 species 1 483 0 Rhodococcus pyridinivorans 378 1 0 334542 species Rhodococcus qingshengii Mycobacteriaceae 214 0 32945 57 1762 1 family 1205 2 0 1073531 genus 695 1 0 875328 species Mycobacterium sinense 510 1 0 1788 species Mycobacterium terrae genus 1866885 0 13 9682 Mycobacterium goodii 0 829 1 134601 species Mycobacterium rhodesiae species 36814 0 1 517 species 110539 0 1 829 Mycobacterium vanbaalenii 710 1 0 1804 species Mycobacterium gilvum Mycobacterium vaccae species 1810 0 1 708 Mycobacterium smegmatis 1772 species 0 893 1 species 1800 655 1 0 Mycobacterium chubuense 0 1 576 1766 species Mycobacterium fortuitum Mycobacterium neoaurum 1 600 0 1795 species 1 917 0 species 1771 Mycobacterium phlei 1077 1 0 species 1791 Mycobacterium aurum species 1797 0 636 1 Mycobacterium thermoresistibile Mycobacterium litorale 758802 species 1 735 0 7 Hoyosella 697025 1 genus 0 322 2 0 315 1 species 639313 Hoyosella subflava 670516 genus 2870 5 0 Mycobacterium saopaulense 360 1 0 species 1578165 Mycobacterium abscessus 0 1225 1 36809 species Mycobacterium immunogenum species 83262 0 322 1 Mycobacterium stephanolepidis 1 436 0 1520670 species Mycobacterium chelonae 527 1 0 species 1774 genus 1 1763 18652 34 0 1294 Mycobacterium 0 7097 13 no rank 2642494 0 578 1 species 1682113 Mycobacterium sp. YC-RL4 species 1561223 431 1 0 Mycobacterium sp. QIA-37 0 1 600 species 1570328 Mycobacterium sp. NRRL B-3805 species 2051552 0 1 552 Mycobacterium sp. PYR15 0 1 453 164757 species Mycobacterium sp. JLS Mycobacterium sp. JS623 0 613 1 212767 species 1 945 0 1879023 species Mycobacterium sp. djl-10 1 447 0 189918 species Mycobacterium sp. KMS 1920667 species 0 604 1 Mycobacterium sp. WY10 1168287 species 0 1 224 Mycobacterium sp. MOTT36Y Mycobacterium sp. EPa45 1 674 0 species 1545728 Mycobacterium sp. MCS species 164756 1 429 0 547 1 0 1273687 species Mycobacterium sp. VKM Ac-1817D 77643 species group 0 1457 4 0 1097 3 species 1773 1 Mycobacterium tuberculosis 392 0 350 1 biotype 33894 Mycobacterium africanum Mycobacterium bovis 0 1 355 biotype 1765 Mycobacterium canettii species 78331 0 360 1 414 1 0 species 261524 Mycobacterium liflandii Mycobacterium leprae 1769 species 0 175 1 Mycobacterium ulcerans 0 1 454 1809 species 0 1 498 1781 species Mycobacterium marinum 567 1 0 species 29311 Mycobacterium haemophilum species group 2249310 0 1 567 species 722731 1 567 0 Mycobacterium shigaense 120793 species group 0 8 4709 species 1767 1 0 1491 4 481 Mycobacterium intracellulare Mycobacterium indicus pranii 0 1 208 subspecies 35617 Mycobacterium chimaera 550 1 0 subspecies 222805 Mycobacterium yongonense 252 1 0 1203599 subspecies Mycobacterium colombiense species 339268 0 830 1 Mycobacterium avium species 1764 0 1707 1 Mycobacterium marseillense species 701042 0 394 1 Mycobacterium paraintracellulare 0 1 287 1138383 species 782 1 0 482462 species Mycobacterium dioxanotrophicus species 1768 0 638 1 Mycobacterium kansasii 2 Segniliparaceae family 316606 1 0 3 336 Segniliparus 19 0 334 2 286801 1 genus Segniliparus rotundus 286802 species 0 1 315 20 16044 0 order 1 85008 Micromonosporales 20 16024 19 0 family 1 28056 Micromonosporaceae 331 0 6 6778 genus 1865 1 Actinoplanes 94 Actinoplanes friuliensis 0 1 1393 species 196914 2626549 no rank 0 3 4080 Actinoplanes sp. SE50/110 1230 1 0 134676 species Actinoplanes sp. N902-109 649831 species 1620 1 0 species 2033844 0 1 1230 Actinoplanes sp. SE50 species 1866 1211 1 0 Actinoplanes missouriensis 2 Salinispora 168694 1 genus 0 1456 3 Salinispora arenicola 168697 species 0 1 855 168695 species 0 599 1 Salinispora tropica 0 3761 4 genus 1873 1 Micromonospora 70 no rank 2617518 1 1343 0 0 1 1343 648999 species Micromonospora sp. L5 Verrucosispora maris 1 1042 0 1003110 species 47850 species 0 1306 1 Micromonospora aurantiaca Verrucosispora 15 1 0 84593 genus 21 Plantactinospora genus 1 673534 4 3683 0 no rank 2631981 3 3662 0 1 1125 0 2108470 species Plantactinospora sp. BC1 species 2024580 1 1340 0 Plantactinospora sp. KBS50 Plantactinospora sp. BB1 1 1197 0 2071627 species 0 231 3 1643683 order Acidothermaceae 1 0 231 3 85032 1 family 1 28048 genus 230 2 0 4 Acidothermus Acidothermus cellulolyticus 0 1 226 species 28049 5 889 0 class 1 1497346 Thermoleophilia 5 order 588673 1 0 4 884 58 Solirubrobacterales family 320583 1 0 826 3 7 Conexibacteraceae Conexibacter 22 0 819 2 191494 1 genus 1 797 0 species 191495 Conexibacter woesei no rank 1752188 4 394 0 94 1 0 1848756 species Actinobacteria bacterium IMCC26103 1848255 species 1 137 0 Actinobacteria bacterium IMCC25003 0 1 51 species 1848755 Actinobacteria bacterium IMCC26077 Actinobacteria bacterium IMCC19121 species 1848754 0 1 112 1 Acidimicrobiia class 1 84992 7 982 0 24 Acidimicrobiales 84993 1 order 0 981 6 Acidimicrobiaceae 1 0 3 218 family 84994 1 Acidimicrobium 1 0 2 217 genus 53634 1 Acidimicrobium ferrooxidans species 53635 1 216 0 family 2448023 739 2 0 genus 682522 1 0 2 739 9 Ilumatobacter 0 1 730 467094 species Ilumatobacter coccineus 0 42887 144 clade 1798711 42887 144 0 phylum 1 1117 Cyanobacteria 22 280 Synechococcales 1 1890424 order 54 19448 0 392 2 0 1890429 family 3 Acaryochloris 1 155977 genus 2 392 0 Acaryochloris marina species 155978 389 1 0 Merismopediaceae 1 0 5 757 family 1890428 1 0 4 756 genus 1142 1 Synechocystis 17 3 739 0 2640012 no rank Synechocystis sp. IPPAS B-1465 2116702 species 250 1 0 Synechocystis sp. PCC 6714 1147 species 0 1 238 Synechocystis sp. PCC 6803 0 1 251 1148 species Prochloraceae 3 1737 5 0 1 1213 family 1218 1 genus 0 4 1734 1 Prochlorococcus Prochlorococcus marinus 1219 species 1 1416 0 0 317 2 2627481 no rank 0 1 193 species 1501269 Prochlorococcus sp. MIT 0801 Prochlorococcus sp. MIT 0604 1 124 0 species 1501268 0 6 1931 1890438 1 family Leptolyngbyaceae 38 19 Leptolyngbya genus 47251 1 0 5 1893 372 1 0 1184 species Leptolyngbya boryana 0 3 1502 2650499 no rank species 1080068 876 1 0 Leptolyngbya sp. O-77 383 1 0 species 1752064 Leptolyngbya sp. NIES-3755 Leptolyngbya sp. PCC 7376 species 111781 243 1 0 0 364 1 2303730 family 170610 genus 0 1 364 1209493 species 1 364 0 Halomicronema hongdechloris 1890436 family 123 2 0 0 123 2 genus 1152 1 Pseudanabaena 7 no rank 2593292 0 116 1 Pseudanabaena sp. PCC 7367 116 1 0 82654 species family 1890426 1 0 32 13864 62 Synechococcaceae Cyanobium 25 3 3230 0 1 167375 genus 0 1 1753 no rank 2627006 1851505 species 0 1 1753 Cyanobium sp. NIES-981 0 1 1452 species 59930 Cyanobium gracile 0 269 1 genus 13034 Dactylococcopsis salina 0 269 1 292566 species 0 218 1 genus 146785 218 1 0 146786 species Thermosynechococcus elongatus Synechococcus 186 10085 26 0 genus 1 1129 species 33070 0 154 1 Synechococcus lividus no rank 2626047 23 9188 0 Synechococcus sp. CC9902 316279 species 1 275 0 Synechococcus sp. PCC 7117 165 1 0 species 195498 Synechococcus sp. RCC307 0 1 448 316278 species Synechococcus sp. SynAce01 814 1 0 1916956 species Synechococcus sp. UTEX 2973 species 1350461 0 469 1 Synechococcus sp. KORDI-49 0 576 1 585423 species species 195248 199 1 0 Synechococcus sp. PCC 8807 Synechococcus sp. CC9311 0 1 242 64471 species 0 1 590 species 110662 Synechococcus sp. CC9605 species 585425 0 517 1 Synechococcus sp. KORDI-52 Synechococcus sp. WH 8109 species 166314 0 421 1 374982 species 0 150 1 Synechococcus sp. PCC 73109 species 32051 1 341 0 Synechococcus sp. WH 7803 Synechococcus sp. PCC 7003 0 1 222 species 374981 Synechococcus sp. WH 8102 species 84588 1 352 0 Synechococcus sp. JA-3-3Ab 0 887 1 321327 species Synechococcus sp. JA-2-3B'a(2-13) 810 1 0 321332 species 0 349 1 29410 species Synechococcus sp. WH 8103 0 1 377 1280380 species Synechococcus sp. KORDI-100 78 1 0 species 195253 Synechococcus sp. PCC 6312 species 1827144 1 330 0 Synechococcus sp. NIES-970 Synechococcus sp. PCC 7002 0 1 260 32049 species Synechococcus sp. PCC 7502 species 1173263 0 316 1 Synechococcus elongatus 32046 species 557 1 0 10032 42 0 1301283 subclass 18 Oscillatoriales 1150 1 order 0 19 3648 Cyanothecaceae 7 0 3 332 family 1892249 1 0 2 325 genus 43988 1 Cyanothece 17 no rank 2649277 0 1 308 0 1 308 species 395961 Cyanothece sp. PCC 7425 6 1168 0 family 1 1892254 Oscillatoriaceae 4 genus 1155738 1 0 291 2 4 Moorea 1155739 species 0 1 287 Moorea producens Oscillatoria 3 3 873 0 1 1158 genus 320 1 0 species 118323 Oscillatoria acuminata 0 1 550 482564 species Oscillatoria nigro-viridis 1 Coleofasciculaceae 1892251 1 family 0 2 667 63132 genus 0 666 1 no rank 2648775 0 1 666 0 1 666 1173025 species Geitlerinema sp. PCC 7407 Microcoleaceae 4 1134 5 0 family 1 1892252 1205 1 genus 0 2 720 7 Trichodesmium 1206 species 0 1 713 Trichodesmium erythraeum Microcoleus 2 410 2 0 1 44471 genus 0 1 408 no rank 2642155 1173027 species 0 1 408 Microcoleus sp. PCC 7113 0 2 329 family 1892255 1 Gomontiellaceae 3 241421 genus 326 1 0 0 1 326 species 241425 Crinalium epipsammum 2 Chroococcales order 1 1118 23 6384 0 family 1 1890452 732 3 0 6 Cyanobacteriaceae 2 Cyanobacterium 1 102234 genus 2 726 0 Cyanobacterium aponinum 1 724 0 379064 species family 1890449 1 0 4 1238 12 Microcystaceae genus 1 1125 1226 3 0 5 Microcystis no rank 2643300 1 488 0 Microcystis sp. MC19 species 1967666 488 1 0 1126 species 0 733 1 Microcystis aeruginosa 7 1512 0 family 1 1890464 Chroococcaceae 13 9 Geminocystis 669357 1 genus 0 854 3 no rank 2625037 845 2 0 0 361 1 1617448 species Geminocystis sp. NIES-3709 Geminocystis sp. NIES-3708 1615909 species 1 484 0 genus 268175 0 299 1 2648896 no rank 299 1 0 Chondrocystis sp. NIES-4102 0 299 1 species 2005460 102231 1 genus 0 346 2 3 Gloeocapsa 2623012 no rank 0 343 1 1 343 0 species 1173026 Gloeocapsa sp. PCC 7428 Aphanothecaceae 1 8 2900 0 1 1890450 family 0 2 1261 28070 genus 2546356 species 1032 1 0 strain 65393 1 1032 0 Cyanothece sp. PCC 7424 2546359 species 229 1 0 497965 strain 229 1 0 Cyanothece sp. PCC 7822 no rank 92682 1 345 0 genus 76023 1 345 0 no rank 2632878 1 345 0 65093 species 345 1 0 Halothece sp. PCC 7418 839 2 0 genus 2546365 species 2546366 0 2 839 Cyanothece sp. PCC 8802 395962 strain 0 434 1 0 1 405 strain 41431 Cyanothece sp. PCC 8801 325 1 0 263510 genus 0 325 1 species 2546360 1 325 0 strain 43989 Cyanothece sp. ATCC 51142 129 1 0 genus 1453359 Candidatus Atelocyanobacterium thalassa 129 1 0 713887 species 757 6 0 order 1 52604 Pleurocapsales 2 family 1 1890500 2 270 0 6 Hyellaceae 1 264 0 genus 44474 Pleurocapsa minor species 54308 0 264 1 family 1 1890498 485 3 0 1 Dermocarpellaceae 484 2 0 102115 genus 0 1 320 2642663 no rank Stanieria sp. NIES-3757 1807358 species 0 1 320 Stanieria cyanosphaera 102116 species 0 1 164 1890505 order 0 3 296 3 296 0 1 1890528 family Chroococcidiopsidaceae 1 Chroococcidiopsis 3 0 295 2 54298 1 genus Chroococcidiopsis thermalis 292 1 0 54299 species 1 116 0 1983111 no rank cyanobacterium endosymbiont of Epithemia turgida 718217 species 0 1 116 14 Nostocales 1161 1 order 0 10623 31 0 2953 8 family 2661849 81 Calothrix 1186 1 genus 0 2953 8 no rank 2619626 0 6 2535 Calothrix sp. 336/3 1 246 0 1337936 species 369 1 0 species 1954171 Calothrix sp. NIES-2098 species 2005462 323 1 0 Calothrix sp. NIES-3974 Calothrix sp. NIES-4101 2005461 species 0 1 475 Calothrix sp. PCC 7507 99598 species 1 249 0 0 1 873 2005469 species Calothrix sp. NIES-4071 32054 species 1 337 0 Calothrix parietina 3 Rivulariaceae family 1 1185 3 923 0 Rivularia 59 920 2 0 1 373984 genus 1 861 0 2676603 no rank species 373994 861 1 0 Rivularia sp. PCC 7116 0 1 424 no rank 1219117 1 424 0 species 1940762 Nostocales cyanobacterium HT-58-2 family 1 1162 5901 17 0 14 Nostocaceae Anabaena 2 1695 4 0 1 1163 genus no rank 2619674 0 1370 2 Anabaena sp. 90 46234 species 823 1 0 Anabaena sp. WA102 0 547 1 species 1647413 species 1165 1 323 0 Anabaena cylindrica Nostoc 91 0 3538 10 genus 1177 1 Nostoc punctiforme 0 1 472 species 272131 Nostoc flagelliforme species 1306274 1032 1 0 no rank 2593658 0 1943 7 1 243 0 1618022 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 342 1 species 1261031 species 1751286 1 323 0 Nostoc sp. NIES-3756 Nostoc sp. PCC 7524 0 1 284 28072 species species 103690 358 1 0 Nostoc sp. PCC 7120 Nostoc sp. PCC 7107 1 181 0 317936 species Nostoc sp. CENA543 212 1 0 1869241 species 654 2 0 genus 264688 0 1 402 264691 species Trichormus variabilis Trichormus azollae 0 252 1 1164 species 408 1 0 1892263 family 0 408 1 genus 1190 494603 no rank 0 408 1 species 1752063 1 408 0 Fischerella sp. NIES-3754 Gloeobacteria 25 0 6 1593 class 307596 1 34 Gloeobacterales order 307595 1 0 1568 5 Gloeobacteraceae 20 1534 4 0 1 1890422 family Gloeobacter 19 0 3 1514 genus 33071 1 Gloeobacter violaceus 0 753 1 33072 species Gloeobacter kilaueensis 0 1 742 species 1416614 phylum 67819 0 491 4 Fimbriimonadia 4 0 4 491 class 1663419 1 order 1663425 1 0 3 487 1 Fimbriimonadales 486 2 0 family 1 1663426 Fimbriimonadaceae 2 484 1 0 1005038 genus Fimbriimonas ginsengisoli species 1005039 0 1 484 22435 36 0 phylum 1297 188787 1 class 0 36 22435 160 Deinococci 68933 1 order 0 17 8063 81 Thermales 63 Thermaceae family 1 188786 16 7982 0 1 186191 genus 423 2 0 12 Marinithermus species 186192 1 411 0 Marinithermus hydrothermalis Oceanithermus 3 2 1147 0 1 208447 genus 187137 species 0 1144 1 Oceanithermus profundus Thermus 140 0 8 4954 genus 270 1 Thermus thermophilus species 274 1 1580 0 Thermus oshimai 56957 species 0 578 1 56956 species 1 307 0 Thermus brockianus 271 species 0 1 683 Thermus aquaticus Thermus parvatiensis 456163 species 581 1 0 37636 species 0 457 1 Thermus scotoductus no rank 2619321 0 1 628 Thermus sp. CCB_US3_UF1 1111069 species 0 628 1 Meiothermus 10 0 1395 3 65551 1 genus 277 species 917 1 0 Meiothermus ruber Meiothermus silvanus species 52022 0 468 1 order 2762275 0 3 587 Trueperaceae 7 3 587 0 1 332247 family 2 580 0 genus 1 332248 Truepera 4 species 332249 0 1 576 Truepera radiovictrix Deinococcales 159 0 13625 15 118964 1 order family 183710 1 0 14 13466 139 Deinococcaceae Deinococcus 155 0 13 13327 1298 1 genus Deinococcus deserti 310783 species 1085 1 0 Deinococcus puniceus 856 1 0 species 1182568 672 1 0 species 432329 Deinococcus peraridilitoris Deinococcus geothermalis 0 780 1 species 68909 Deinococcus proteolyticus 0 1 1518 species 55148 502394 species 0 1 1332 Deinococcus gobiensis species 1309411 0 1246 1 Deinococcus soli Cha et al. 2016 0 1 1078 species 309887 Deinococcus maricopensis Deinococcus swuensis 0 1 1275 1182571 species Deinococcus actinosclerus species 1768108 0 1224 1 species 1299 1062 1 0 Deinococcus radiodurans 1 1044 0 no rank 2623546 2080419 species 0 1044 1 Deinococcus sp. NW-56 Firmicutes 135 8156118 711 0 1 1239 phylum no rank 84086 0 1 630 endosymbiont 'TC1' of Trimyema compressum species 243899 0 630 1 182 Bacilli class 91061 1 0 429 357580 2283 Lactobacillales order 1 186826 164567 165 0 33958 1 family 0 32494 58 296 Lactobacillaceae 3 1152 0 genus 2767886 1 287 0 637971 species Lactobacillus koreensis 645 1 0 species 1580 Lactobacillus brevis 1 220 0 267363 species Lactobacillus zymae 0 3 1700 genus 2742598 0 598 1 1613 species Lactobacillus fermentum Lactobacillus reuteri 1 650 0 species 1598 Lactobacillus mucosae species 97478 0 452 1 genus 2767887 0 4 3921 1601 species 1 432 0 Lactobacillus agilis Lactobacillus salivarius 0 1544 1 1624 species 1 433 0 species 89059 Lactobacillus acidipiscis Lactobacillus ruminis species 1623 0 1512 1 2767842 genus 0 1518 3 Lactobacillus pentosus 0 1 474 species 1589 1 235 0 species 60520 Lactobacillus paraplantarum 1590 species 1 809 0 Lactobacillus plantarum 0 2522 6 genus 2767879 1612 species 528 1 0 Lactobacillus farciminis species 1602 1 361 0 Lactobacillus alimentarius Lactobacillus heilongjiangensis 1074467 species 1 432 0 418 1 0 species 1007676 Lactobacillus ginsenosidimutans Lactobacillus allii 0 1 331 species 1847728 Lactobacillus crustorum 392416 species 0 1 452 2767893 genus 0 3 920 Lactobacillus curieae 1138822 species 1 363 0 0 325 1 1581 species Lactobacillus buchneri 232 1 0 species 152331 Lactobacillus parabuchneri 2767877 genus 0 1 139 Lactobacillus kunkeei 139 1 0 species 148814 6 1735 0 1 1253 genus Pediococcus 5 Pediococcus pentosaceus 0 374 1 species 1255 Pediococcus inopinatus 114090 species 0 285 1 Pediococcus claussenii 187452 species 0 343 1 1670797 species group 1 402 0 Pediococcus acidilactici 0 402 1 1254 species 51663 species 1 326 0 Pediococcus damnosus 3 2344 0 genus 2759736 species 1582 0 1 1025 Lactobacillus casei 792 1 0 1597 species Lactobacillus paracasei 47715 species 0 1 527 Lactobacillus rhamnosus 0 1 2078 genus 2767876 0 2078 1 1603 species Lactobacillus amylophilus 245 1 0 genus 2767890 Lactobacillus hokkaidonensis 1193095 species 0 1 245 2767889 genus 917 2 0 0 553 1 species 1610 Lactobacillus coryniformis Lactobacillus backii species 375175 364 1 0 genus 1 1578 16 10947 0 2126 Lactobacillus Lactobacillus amylolyticus 1 176 0 83683 species no rank 2620435 0 4 1154 2108362 species 221 1 0 Lactobacillus sp. D1501 Lactobacillus sp. wkB8 236 1 0 species 1545702 2099788 species 1 404 0 Lactobacillus sp. CBA3605 Lactobacillus sp. CBA3606 2099789 species 0 1 293 Lactobacillus gasseri 1596 species 0 749 1 Lactobacillus delbrueckii 1584 species 1491 1 0 1 402 0 1579 species Lactobacillus acidophilus Lactobacillus acetotolerans species 1600 1 624 0 Lactobacillus gallinarum species 52242 0 1 517 Lactobacillus amylovorus 1604 species 0 994 1 species 1587 779 1 0 Lactobacillus helveticus Lactobacillus johnsonii 33959 species 0 1 1186 109790 species 1 428 0 Lactobacillus jensenii Lactobacillus kefiranofaciens 321 1 0 species 267818 2767892 genus 0 1 471 Lactobacillus paracollinoides species 240427 1 471 0 2767885 genus 0 2 1144 Lactobacillus sakei 728 1 0 species 1599 Lactobacillus curvatus 1 416 0 28038 species 0 2 445 2767881 genus Lactobacillus sanfranciscensis 0 1 235 1625 species 53444 species 0 1 210 Lactobacillus lindneri 0 29886 19 family 81852 1 Enterococcaceae 83 Vagococcus 4 1352 3 0 1 2737 genus Vagococcus penaei 0 1 521 species 633807 species 519472 827 1 0 Vagococcus teuberi Enterococcus 2546 12 26755 0 genus 1 1350 Enterococcus thailandicus 667 1 0 417368 species 3 1715 0 2608891 no rank Enterococcus sp. FDAARGOS_375 2060307 species 0 691 1 Enterococcus sp. FDAARGOS_163 1 502 0 species 2060306 0 1 522 2057791 species Enterococcus sp. CR-Ec1 Enterococcus durans 0 745 1 species 53345 Enterococcus faecalis species 1351 4166 1 0 53346 species 0 1 816 Enterococcus mundtii Enterococcus hirae 1354 species 0 1 968 Enterococcus faecium 0 14032 1 species 1352 0 1 648 2005703 species Enterococcus wangshanyuanii Enterococcus casseliflavus species 37734 0 1 452 genus 1 51668 2 1142 0 5 Tetragenococcus 1 1137 0 species 51669 Tetragenococcus halophilus 1 554 0 genus 33969 Melissococcus plutonius species 33970 0 1 554 268 1 0 no rank 263855 Lactobacillales bacterium 1993866 species 0 1 268 Leuconostocaceae 3 0 4253 18 family 81850 1 Oenococcus 1 0 324 2 genus 46254 1 Oenococcus oeni 323 1 0 1247 species 0 9 2355 1243 1 genus Leuconostoc 18 Leuconostoc garlicum 0 211 1 species 255248 Leuconostoc mesenteroides species 1245 0 700 1 Leuconostoc kimchii 175 1 0 species 136609 no rank 2685106 0 1 235 Leuconostoc sp. C2 0 235 1 species 979982 174 1 0 species 1246 Leuconostoc lactis 1 191 0 species 1252 Leuconostoc carnosum species 33964 242 1 0 Leuconostoc citreum 1 409 0 species 1244 Leuconostoc gelidum genus 1 46255 6 1571 0 13 Weissella Weissella koreensis species 165096 1 227 0 0 1 300 1249 species Weissella paramesenteroides 0 1 306 species 1631871 Weissella jogaejeotgali 759620 species 1 325 0 Weissella ceti 137591 species 1 400 0 Weissella cibaria 0 8 3793 186827 1 family Aerococcaceae 2 genus 1 1375 3791 7 0 196 Aerococcus species 1376 1 610 0 Aerococcus urinae Aerococcus viridans species 1377 0 1 376 Aerococcus sanguinicola 119206 species 0 1 820 Aerococcus christensenii 634 1 0 87541 species species 128944 0 1 436 Aerococcus urinaehominis 51665 species 0 719 1 Aerococcus urinaeequi family 186828 1 0 11 4332 8 Carnobacteriaceae Carnobacterium 20 5 2401 0 1 2747 genus 1 537 0 147709 species Carnobacterium inhibens Carnobacterium maltaromaticum 2751 species 0 1 594 no rank 257487 1250 2 0 species 1564681 712 1 0 Carnobacterium sp. CP1 1 538 0 species 208596 Carnobacterium sp. 17-4 1 1470540 genus 3 1047 0 1 Jeotgalibaca 0 701 1 no rank 2621505 1903686 species 0 701 1 Jeotgalibaca sp. PTS2502 Jeotgalibaca dankookensis 1 345 0 708126 species genus 191769 1 0 876 2 7 Marinilactibacillus 869 1 0 no rank 2632303 0 869 1 species 1911586 Marinilactibacillus sp. 15R Streptococcaceae 889 0 49 87258 family 1300 1 13 Lactococcus 1 1357 genus 5 4311 0 1366 species 0 353 1 Lactococcus raffinolactis Lactococcus garvieae species 1363 1 776 0 Lactococcus piscium 1364 species 0 1 523 Lactococcus lactis 0 1 2646 species 1358 Streptococcus 3338 82058 43 0 genus 1 1301 4263 1 0 1304 species Streptococcus salivarius Streptococcus iniae 1 515 0 species 1346 315405 species 0 928 1 Streptococcus gallolyticus Streptococcus uberis 0 1 317 1349 species 402 1 0 59310 species Streptococcus macedonicus 0 831 1 1335 species Streptococcus equinus Streptococcus pyogenes species 1314 2702 1 0 species 45634 0 1 530 Streptococcus cristatus Streptococcus mutans 618 1 0 species 1309 species 1814128 412 1 0 Streptococcus halotolerans species 1888195 0 1 339 Streptococcus himalayensis Streptococcus parauberis 0 1 694 1348 species 0 1 2949 150055 species Streptococcus lutetiensis 7 6548 0 2608887 no rank species 1839799 1 1130 0 Streptococcus sp. FDAARGOS_192 species 1759399 791 1 0 Streptococcus sp. A12 Streptococcus sp. I-G2 1156431 species 1 1530 0 Streptococcus sp. oral taxon 431 species 712633 0 1 502 Streptococcus sp. I-P16 1 1640 0 1156433 species Streptococcus sp. NPS 308 0 508 1 species 1902136 1319 species 1 447 0 Streptococcus sp. 'group B' Streptococcus mitis 0 2609 1 28037 species Streptococcus pantholopis 1 591 0 species 1811193 Streptococcus thermophilus 1308 species 0 1 2467 Streptococcus parasanguinis 2054 1 0 1318 species Streptococcus infantarius species 102684 3900 1 0 Streptococcus pneumoniae 1313 species 1167 1 0 Streptococcus gordonii 1154 1 0 species 1302 Streptococcus pasteurianus 0 1 4354 species 197614 Streptococcus sanguinis 0 986 1 1305 species species 1825069 495 1 0 Streptococcus marmotae 0 1362 2 119603 species group species 1334 0 1 359 Streptococcus dysgalactiae Streptococcus equi 1 1003 0 species 1336 Streptococcus merionis 400065 species 0 406 1 1 8035 0 species 1307 Streptococcus suis Streptococcus acidominimus 633 1 0 1326 species Streptococcus pluranimalium 0 271 1 82348 species 1 407 0 species 257758 Streptococcus pseudopneumoniae species 1303 1 1687 0 Streptococcus oralis 19482 3 0 671232 species group 1 11695 0 1328 species Streptococcus anginosus 0 879 1 1338 species Streptococcus intermedius species 76860 6908 1 0 Streptococcus constellatus Streptococcus agalactiae 1311 species 0 1 4612 0 263 192831 order 1385 1 Bacillales 469 539002 no rank 0 9 3385 539742 no rank 0 2589 7 7 2589 0 1 33986 genus Exiguobacterium 117 332410 species 1 400 0 Exiguobacterium sibiricum 0 1772 4 2644629 no rank Exiguobacterium sp. MH3 1399115 species 1 335 0 species 1224749 0 537 1 Exiguobacterium sp. ZWU0009 1 488 0 species 1849031 Exiguobacterium sp. U13-1 Exiguobacterium sp. AT1b 360911 species 1 412 0 0 300 1 132920 species Exiguobacterium antarcticum 0 796 2 539738 no rank genus 1378 1 0 2 796 1 Gemella 0 1 795 2624949 no rank Gemella sp. oral taxon 928 1785995 species 0 1 795 186817 1 family 0 118 83436 169 Bacillaceae genus 459532 1 0 2 497 10 Terribacillus Terribacillus aidingensis 0 1 487 586416 species 1329200 1 genus 0 1128 3 18 Fictibacillus Fictibacillus arsenicus 0 1 604 species 255247 species 1221500 506 1 0 Fictibacillus phosphorivorans 2526 6 0 genus 1 150247 Anoxybacillus 11 198467 species 1 417 0 Anoxybacillus gonensis Anoxybacillus amylolyticus 438 1 0 species 294699 no rank 2639704 2 1010 0 0 453 1 species 1490057 Anoxybacillus sp. B7M1 1490052 species 0 1 557 Anoxybacillus sp. B2M1 Anoxybacillus flavithermus 0 1 650 species 33934 genus 2675230 2 1365 0 Bacillus kochii 859143 species 583 1 0 Bacillus oceanisediminis 0 1 782 species 665099 44 Virgibacillus 1 84406 genus 3207 7 0 1473 species 0 412 1 Virgibacillus pantothenticus 572 1 0 species 2017483 Virgibacillus phasianinus Virgibacillus necropolis 163877 species 0 697 1 Virgibacillus halodenitrificans 537 1 0 1482 species 2620237 no rank 945 2 0 Virgibacillus sp. SK37 species 403957 1 400 0 Virgibacillus sp. 6R 0 1 545 1911587 species Amphibacillus 1 2 434 0 1 29331 genus species 1449 0 1 433 Amphibacillus xylanus 2 1346 0 45667 genus 1 823 0 species 402384 Halobacillus mangrovi Halobacillus halophilus 1 523 0 1570 species 1 593 0 genus 1055323 33936 species 1 593 0 Aeribacillus pallidus 0 5 3119 2675234 genus 0 1 998 species 79880 Bacillus clausii Bacillus krulwichiae 630 1 0 species 199441 Bacillus pseudofirmus species 79885 0 449 1 Bacillus halodurans 484 1 0 species 86665 species 300825 0 558 1 Bacillus lehensis 182709 1 genus 0 2 1115 3 Oceanobacillus 182710 species 0 1112 1 Oceanobacillus iheyensis genus 2675229 0 2 1469 Bacillus muralis 456 1 0 species 264697 Bacillus simplex 0 1013 1 species 1478 genus 175304 1 0 2 632 4 Lentibacillus 0 628 1 1472767 species Lentibacillus amyloliquefaciens 21 Lysinibacillus 400634 1 genus 0 5 3540 Lysinibacillus sphaericus 0 1662 1 1421 species Lysinibacillus varians 0 874 1 species 1145276 502 1 0 no rank 2636778 2072025 species 0 1 502 Lysinibacillus sp. YS11 Lysinibacillus fusiformis 28031 species 0 481 1 351195 genus 0 621 1 Salimicrobium jeotgali 0 621 1 1230341 species 429 Geobacillus genus 129337 1 0 15 6951 species 129338 0 1 498 Geobacillus subterraneus Geobacillus thermodenitrificans species 33940 0 553 1 Geobacillus stearothermophilus 811 1 0 1422 species 0 2175 4 species group 1505648 Geobacillus thermoleovorans species 33941 1 818 0 Geobacillus kaustophilus 0 1 223 1462 species species 169283 0 750 1 Geobacillus lituanicus 0 1 384 33938 species Geobacillus thermocatenulatus 0 2034 6 2642459 no rank Geobacillus sp. Y4.1MC1 species 581103 573 1 0 Geobacillus sp. Y412MC61 species 544556 0 1 215 Geobacillus sp. GHH01 300 1 0 species 1233873 species 471223 376 1 0 Geobacillus sp. WCH70 Geobacillus sp. Y412MC52 0 1 245 species 550542 Geobacillus sp. C56-T3 325 1 0 species 691437 0 1 451 species 1921421 Geobacillus genomosp. 3 2 600 0 genus 1 1906945 Parageobacillus 1 Parageobacillus thermoglucosidasius 1426 species 0 1 599 58 54124 0 genus 1 1386 Bacillus 3112 species 324767 0 1 976 Bacillus infantis Bacillus glycinifermentans 1085 1 0 species 1664069 species group 1792192 563 1 0 563 1 0 species 293387 Bacillus altitudinis Bacillus gibsonii 0 1 116 species 79881 0 7312 19 185979 no rank Bacillus sp. 1NLA3E species 666686 620 1 0 Bacillus sp. SJ-10 species 563169 1 250 0 Bacillus sp. FJAT-14266 0 376 1 species 1837130 1 119 0 1628753 species Bacillus sp. LM 4-2 0 513 1 species 1565991 Bacillus sp. X1(2014) 199 1 0 species 1409 Bacillus sp. (in: Bacteria) Bacillus sp. YP1 species 1574141 0 1 244 species 1827146 0 1 656 Bacillus sp. IHB B 7164 543 1 0 species 756828 Bacillus sp. WP8 1 304 0 1446792 species Bacillus sp. Pc3 species 1941347 0 1 254 Bacillus sp. 275 1 221 0 species 2009331 Bacillus sp. MD-5 0 1 79 2049935 species Bacillus sp. Lzh-5 98228 species 1046 1 0 Bacillus sp. OxB-1 1 442 0 species 2026248 Bacillus sp. 1s-1 1 442 0 species 1856406 Bacillus sp. H15-1 0 506 1 species 1774743 Bacillus sp. SDLI1 Bacillus sp. BH072 1570330 species 1 75 0 species 1127744 0 423 1 Bacillus sp. JS 0 9 10848 653685 species group 119858 species 0 1 805 Bacillus sonorensis species 72361 0 109 1 Bacillus vallismortis Bacillus licheniformis 0 1 695 1402 species Bacillus paralicheniformis 0 727 1 species 1648923 1938374 species subgroup 3 3495 0 Bacillus velezensis species 492670 0 1147 1 Bacillus amyloliquefaciens 1390 species 0 1 1842 Bacillus siamensis 0 1 506 659243 species Bacillus atrophaeus 1452 species 1 1058 0 1 3959 0 1423 species Bacillus subtilis 632773 species 0 940 1 Bacillus beveridgei 1398 species 0 1 2001 Bacillus coagulans 0 1 616 86664 species Bacillus flexus Bacillus cohnii 1 584 0 33932 species 15899 10 0 species group 86661 Bacillus anthracis 0 378 1 species 1392 1396 species 0 5741 1 Bacillus cereus Bacillus toyonensis 0 1 383 species 155322 Bacillus thuringiensis 1 4881 0 species 1428 Bacillus cytotoxicus species 580165 0 485 1 1 328 0 658666 species Bacillus bombysepticus 2750818 no rank 0 3 1593 1892404 species 303 1 0 Bacillus sp. ABP14 712 1 0 species 2053832 Bacillus sp. HBCD-sjtu Bacillus sp. FDAARGOS_235 578 1 0 1839798 species Bacillus mycoides 1405 species 0 2110 1 0 1 505 1479 species Bacillus smithii 1178537 species 0 1 421 Bacillus xiamenensis species 412384 1 561 0 Bacillus aryabhattai Bacillus safensis species 561879 0 1 1341 0 941 1 species 135735 Bacillus endophyticus Bacillus cellulosilyticus species 1413 1 459 0 Bacillus weihaiensis species 1547283 0 1 662 Bacillus pumilus species 1408 0 1 2563 Bacillus methanolicus 1 529 0 1471 species Bacillus megaterium 1404 species 1583 1 0 Bacillus horikoshii 0 507 1 species 79883 Listeriaceae 8 0 9 4467 186820 1 family 43 Listeria genus 1637 1 0 6 4029 Listeria monocytogenes 0 1648 1 1639 species Listeria seeligeri 0 537 1 1640 species 1642 species 1 423 0 Listeria innocua 1638 species 0 1 854 Listeria ivanovii Listeria welshimeri 1643 species 0 524 1 2755 1 genus 0 430 2 3 Brochothrix 2756 species 1 427 0 Brochothrix thermosphacta 39 Planococcaceae family 1 186818 12377 25 0 Jeotgalibacillus 6 2 669 0 genus 1 157226 0 663 1 species 1508404 Jeotgalibacillus malaysiensis 2 Solibacillus 1 648800 genus 3 1337 0 no rank 2637870 0 1 562 Solibacillus sp. R5-41 0 1 562 2048654 species Solibacillus silvestris 773 1 0 76853 species 1 554 0 genus 648802 Rummeliibacillus stabekisii 241244 species 0 1 554 Sporosarcina 16 5 3368 0 1 1569 genus Sporosarcina psychrophila species 1476 1 476 0 0 1726 2 no rank 2647733 Sporosarcina sp. P37 1 876 0 species 1930546 Sporosarcina sp. P33 species 1930764 0 1 850 species 1571 0 1 1150 Sporosarcina ureae 1 1372 genus 5723 12 0 74 Planococcus 161360 species 414 1 0 Planococcus antarcticus 1374 species 0 332 1 Planococcus kocurii 0 1123 2 no rank 2662419 Planococcus sp. MB-3u-03 species 2058136 694 1 0 1 429 0 species 1526927 Planococcus sp. PAMC 21323 1038856 species 544 1 0 Planococcus plakortidis 1598147 species 0 1 371 Planococcus faecalis Planococcus sp. L10.15 species 1302659 361 1 0 Planococcus rifietoensis 0 1 479 200991 species species 1215089 391 1 0 Planococcus halocryophilus 0 1 1258 192421 species Planococcus maritimus Planococcus donghaensis 0 376 1 species 414778 0 1 687 1649 genus 0 687 1 2644826 no rank species 1750719 1 687 0 Kurthia sp. 11kri321 0 40 22133 90964 1 family Staphylococcaceae 2035 genus 2005363 0 325 1 Auricoccus indicus 1849491 species 1 325 0 0 1 835 45669 genus 835 1 0 407035 species Salinicoccus halodurans 0 33 17272 1279 1 genus Staphylococcus 660 402 1 0 1286 species Staphylococcus simulans Staphylococcus hyicus species 1284 246 1 0 Staphylococcus lutrae species 155085 0 1 503 1281 species 1 357 0 Staphylococcus carnosus Staphylococcus agnetis 0 1 350 985762 species Staphylococcus succinus 430 1 0 61015 species 239 1 0 1294 species Staphylococcus muscae Staphylococcus piscifermentans 0 1 299 species 70258 1 832 0 species 45972 Staphylococcus pasteuri no rank 91994 0 534 1 1 534 0 1715860 species Staphylococcus sp. AntiMn-1 Staphylococcus warneri 0 354 1 species 1292 1 473 0 1295 species Staphylococcus schleiferi Staphylococcus lugdunensis 1 485 0 28035 species Staphylococcus epidermidis 1282 species 0 712 1 46127 species 1 451 0 Staphylococcus felis Staphylococcus condimenti 0 1 482 70255 species species 29388 497 1 0 Staphylococcus capitis Staphylococcus xylosus 1288 species 0 1 723 species 170573 0 355 1 Staphylococcus pettenkoferi Staphylococcus stepanovicii species 643214 0 363 1 462 1 0 species 214473 Staphylococcus nepalensis Staphylococcus equorum 1 468 0 species 246432 Staphylococcus haemolyticus 1 479 0 species 1283 Staphylococcus simiae 445 1 0 308354 species 0 1 432 29385 species Staphylococcus saprophyticus Staphylococcus kloosii 0 397 1 species 29384 283734 species 0 1 663 Staphylococcus pseudintermedius Staphylococcus aureus 1 2295 0 1280 species 0 1 563 985002 species Staphylococcus argenteus Staphylococcus hominis 1290 species 0 1 496 Staphylococcus sciuri species 1296 0 390 1 Staphylococcus cohnii 0 1 435 species 29382 2 Macrococcus genus 69965 1 0 1666 4 no rank 2619255 1 390 0 390 1 0 species 1898474 Macrococcus sp. IME1552 0 929 1 species 69966 Macrococcus caseolyticus species 1855823 1 345 0 Macrococcus canis 28 Alicyclobacillaceae family 1 186823 4737 9 0 10 Tumebacillus 1 432330 genus 3 2296 0 Tumebacillus avium 1 1428 0 1903704 species Tumebacillus algifaecis 1 858 0 species 1214604 Kyrpidia 24 0 3 1091 1129704 1 genus species 33943 0 606 1 Kyrpidia tusciae Kyrpidia sp. EA-1 461 1 0 species 2055160 Alicyclobacillus 16 0 1322 2 genus 29330 1 405212 species 1306 1 0 Alicyclobacillus acidocaldarius 0 46 60343 186822 1 family Paenibacillaceae 125 no rank 85151 1401 3 0 3 1401 0 genus 1 55079 Aneurinibacillus 4 no rank 2642329 0 1 614 1450761 species 0 1 614 Aneurinibacillus sp. XH2 1 783 0 species 1500254 Aneurinibacillus soli 450 Paenibacillus genus 1 44249 53872 36 0 species group 2044880 0 2047 1 0 2047 1 species 483937 Paenibacillus riograndensis 1430 1 0 species 365617 Paenibacillus sabinae Paenibacillus yonginensis 1462996 species 0 1194 1 species 1870820 0 1 1240 Paenibacillus ihbetae species 59893 0 1 1060 Paenibacillus peoriae Paenibacillus kribbensis species 172713 1 562 0 species 1178515 0 850 1 Paenibacillus swuensis 13 19240 0 no rank 185978 1 1666 0 1536773 species Paenibacillus sp. FSL R7-0331 Paenibacillus sp. FSL H7-0737 1 712 0 1536775 species 1 513 0 species 1566358 Paenibacillus sp. IHBB 10380 616 1 0 2069255 species Paenibacillus sp. lzh-N1 Paenibacillus sp. FSL R5-0912 1 2319 0 1536771 species 1258 1 0 species 1695218 Paenibacillus sp. 32O-W 324057 species 0 1451 1 Paenibacillus sp. JDR-2 Paenibacillus sp. FSL P4-0081 species 1536769 0 2447 1 Paenibacillus sp. Y412MC10 0 1 1336 481743 species Paenibacillus sp. FSL H7-0357 1536774 species 2203 1 0 Paenibacillus sp. FSL R7-0273 2507 1 0 1536772 species 0 1 604 1536770 species Paenibacillus sp. FSL R5-0345 species 1870819 1608 1 0 Paenibacillus sp. BIHB4019 Paenibacillus odorifer species 189426 0 1026 1 Paenibacillus stellifer 0 2009 1 species 169760 species 414771 2232 1 0 Paenibacillus donghaensis Paenibacillus bovis species 1616788 1 1693 0 Paenibacillus mucilaginosus 0 1 2809 species 61624 species 160799 2570 1 0 Paenibacillus borealis 511 1 0 species 1763538 Paenibacillus crassostreae species 44251 0 2813 1 Paenibacillus durus 0 1 1034 species 162209 Paenibacillus naphthalenovorans 1873 1 0 species 189425 Paenibacillus graminis species 1126833 1 1108 0 Paenibacillus beijingensis Paenibacillus terrae species 159743 0 1057 1 Paenibacillus polymyxa 0 1 3184 species 1406 Paenibacillus xylanexedens species 528191 1042 1 0 0 838 1 1464 species Paenibacillus larvae 9 Brevibacillus genus 55080 1 0 4 3132 Brevibacillus formosus species 54913 0 783 1 Brevibacillus laterosporus 1465 species 1 1181 0 Brevibacillus brevis 0 1159 1 species 1393 1 76632 genus 1813 2 0 12 Thermobacillus Thermobacillus composti 0 1801 1 377615 species Sporolactobacillaceae 1 2 654 0 1 186821 family no rank 663587 0 653 1 [Bacillus] selenitireducens 85683 species 0 1 653 186824 1 family 0 830 4 1 Thermoactinomycetaceae 0 1 5 292635 genus Laceyella 22 Novibacillus 1 1677050 genus 2 824 0 802 1 0 species 1471761 Novibacillus thermophilus 6 Erysipelotrichia 526524 1 class 0 11 31851 order 1 526525 10 31845 0 43 Erysipelotrichales Erysipelotrichaceae 275 31802 9 0 1 128827 family 1 19923 0 544447 no rank 0 19923 1 species 1834207 Erysipelotrichaceae bacterium I46 59 Erysipelothrix 1 1647 genus 2631 3 0 Erysipelothrix rhusiopathiae species 1648 0 1271 1 species 1514105 1 1301 0 Erysipelothrix larvae 122 Turicibacter genus 1 191303 2 3343 0 3221 1 0 2638206 no rank 1712675 species 0 3221 1 Turicibacter sp. H121 genus 1729679 1 0 2 5630 13 Faecalibaculum Faecalibaculum rodentium 0 1 5617 species 1702221 Clostridia 315 7683846 213 0 1 186801 class 1 53433 order 2651 9 0 3 Halanaerobiales 5 1402 0 972 family 1 2330 genus 3 1006 0 11 Halanaerobium 0 404 1 species 656519 Halanaerobium hydrogeniformans 591 1 0 2331 species Halanaerobium praevalens 1 32636 genus 2 396 0 3 Halothermothrix Halothermothrix orenii 31909 species 1 393 0 3 1246 0 family 1 53434 Halobacteroidaceae 10 0 1 563 28186 genus Acetohalobium arabaticum species 28187 563 1 0 genus 42417 0 1 673 Halobacteroides halobius 42422 species 0 1 673 68295 1 order 0 37 14707 20 Thermoanaerobacterales 227 2 0 1 227387 family Thermodesulfobiaceae 1 227388 genus 0 226 1 Thermodesulfobium narugense 1 226 0 184064 species Thermoanaerobacterales Family III. Incertae Sedis 30 13 5828 0 family 1 543371 0 3812 9 genus 44000 1 Caldicellulosiruptor 80 Caldicellulosiruptor owensensis 1 451 0 species 55205 Caldicellulosiruptor lactoaceticus 52766 species 0 1 436 0 437 1 species 413888 Caldicellulosiruptor hydrothermalis 1 471 0 species 52765 Caldicellulosiruptor kristjanssonii Caldicellulosiruptor kronotskyensis 413889 species 477 1 0 0 1 503 species 717609 Caldicellulosiruptor obsidiansis 44001 species 0 499 1 Caldicellulosiruptor saccharolyticus species 31899 0 458 1 Caldicellulosiruptor bescii 3 1986 0 genus 1 28895 Thermoanaerobacterium 6 Thermoanaerobacterium xylanolyticum 0 707 1 29329 species Thermoanaerobacterium thermosaccharolyticum 0 1273 1 species 1517 Thermoanaerobacteraceae 27 0 19 7823 family 186814 1 Thermacetogenium 1 2 864 0 genus 1 140458 Thermacetogenium phaeum species 85874 0 1 863 Caldanaerobacter 15 0 2 453 249529 1 genus 911092 species 0 438 1 Caldanaerobacter subterraneus 0 4242 9 1754 1 genus Thermoanaerobacter 136 2636821 no rank 0 1038 2 species 573062 1 534 0 Thermoanaerobacter sp. X513 species 399726 0 1 504 Thermoanaerobacter sp. X514 1 418 0 46354 species Thermoanaerobacter wiegelii Thermoanaerobacter italicus 655 1 0 species 108150 29323 species 0 527 1 Thermoanaerobacter brockii Thermoanaerobacter mathranii 583357 species 1 520 0 2325 species 0 421 1 Thermoanaerobacter kivui Thermoanaerobacter pseudethanolicus 527 1 0 496866 species 129957 genus 0 625 1 1 625 0 species 129958 Carboxydothermus hydrogenoformans 0 4 1612 no rank 42857 genus 44260 1 0 2 1092 5 Moorella 1525 species 0 1087 1 Moorella thermoacetica Ammonifex 10 0 520 2 42837 1 genus 0 510 1 species 42838 Ammonifex degensii 2 809 0 family 1 543372 Thermoanaerobacterales Family IV. Incertae Sedis 4 0 1 805 252965 genus Mahella australiensis 252966 species 0 805 1 0 4 555 485256 1 order Natranaerobiales 1 485255 1 family 0 3 554 5 Natranaerobiaceae genus 375928 1 0 2 549 29 Natranaerobius species 375929 520 1 0 Natranaerobius thermophilus 1431 3 0 order 2770089 family 2770093 0 711 2 291988 1 genus 0 711 2 16 Thermosediminibacter Thermosediminibacter oceani 695 1 0 species 291990 0 1 720 family 2770092 499228 genus 1 720 0 Tepidanaerobacter acetatoxydans 0 1 720 species 499229 11695 Clostridiales order 186802 1 0 7664187 159 Ruminococcaceae 510 0 4368494 13 family 541000 1 5949 1 0 no rank 2305133 Ruminococcaceae bacterium CPB6 1572656 species 1 5949 0 8 Ethanoligenens genus 1 253238 8864 2 0 Ethanoligenens harbinense species 253239 8856 1 0 Herbivorax genus 1890281 1 1 0 1 1263 genus 243051 3 0 83 Ruminococcus Ruminococcus albus species 1264 1 7135 0 species 1160721 235833 1 0 Ruminococcus bicirculans Faecalibacterium 1071 0 2 3820474 216851 1 genus 853 species 1 3819403 0 Faecalibacterium prausnitzii genus 946234 1 0 2 286816 101 Flavonifractor Flavonifractor plautii 0 286715 1 292800 species 552397 no rank 2829 1 0 1 2829 0 species 29343 [Clostridium] cellulosi 36069 12 0 2304686 family 1 21698 0 no rank 2305130 species 1834198 1 21698 0 Ruminiclostridium sp. KB18 1 1800 0 2304693 genus 0 1800 1 84032 species [Clostridium] thermosuccinogenes genus 2304691 1 2100 0 [Clostridium] stercorarium species 1510 2100 1 0 13 Fastidiosipila 236752 1 genus 0 2 824 811 1 0 236753 species Fastidiosipila sanguinis 232 Ruminiclostridium genus 1 1508657 3044 2 0 1521 species 0 1 2812 [Clostridium] cellulolyticum 4698 3 0 genus 2304692 [Clostridium] clariflavum species 288965 1 2052 0 Ruminiclostridium thermocellum 0 1 1633 species 1515 1677857 species 0 1 1013 Herbivorax saccincola 1 Mageeibacillus genus 1637257 1 0 2 1905 1904 1 0 884684 species Mageeibacillus indolicus family 1 186803 26 2710216 0 1709 Lachnospiraceae 0 17714 1 genus 2719231 [Clostridium] saccharolyticum species 84030 0 1 17714 72 Blautia 572511 1 genus 0 3 106688 0 77552 1 1322 species Blautia hansenii no rank 2648079 1 29064 0 Blautia sp. YL58 species 1796616 29064 1 0 1663717 1 genus 0 2 4103 3 Herbinix 1679721 species 4100 1 0 Herbinix luporum 0 76213 1 2569097 genus [Eubacterium] hallii 1 76213 0 species 39488 0 4 83698 1506553 1 genus Lachnoclostridium 391 1 43135 0 species 1871021 Lachnoclostridium phocaeense 66219 species 0 4891 1 Lachnoclostridium phytofermentans no rank 2608895 0 35281 1 Lachnoclostridium sp. YL32 1834196 species 0 35281 1 no rank 186928 0 2 1522377 712991 species 12238 1 0 Lachnospiraceae bacterium oral taxon 500 [Eubacterium] rectale 0 1 1510139 species 39491 Anaerostipes 107 444035 2 0 genus 1 207244 Anaerostipes hadrus 649756 species 443928 1 0 genus 841 1 0 219732 2 27 Roseburia species 301301 1 219705 0 Roseburia hominis 191 Butyrivibrio genus 830 1 0 3 11889 43305 species 1 6135 0 Butyrivibrio proteoclasticus Butyrivibrio hungatei 1 5563 0 species 185008 0 1 161666 2719313 genus [Clostridium] bolteae 0 161666 1 species 208479 0 2723 1 698776 genus Cellulosilyticum lentocellum 0 1 2723 29360 species genus 28050 54647 1 0 species 39485 54647 1 0 [Eubacterium] eligens Anaerotignum 3 2 3022 0 1 2039240 genus Anaerotignum propionicum 1 3019 0 species 28446 1007 2 0 68298 family genus 129001 395 1 0 Syntrophothermus lipocalidus 0 1 395 86170 species genus 862 1 612 0 Syntrophomonas wolfei species 863 0 612 1 26 23115 0 family 1 186807 Peptococcaceae 59 Candidatus Desulforudis 3 970 2 0 1 471826 genus Candidatus Desulforudis audaxviator species 471827 1 967 0 43 Desulfosporosinus 1 79206 genus 3003 4 0 Desulfosporosinus meridiei 0 1 1018 79209 species 0 964 1 885581 species Desulfosporosinus acidiphilus 0 978 1 species 1563 Desulfosporosinus orientis 1095 1 0 genus 51196 Syntrophobotulus glycolicus species 51197 0 1095 1 genus 278993 867 1 0 Thermincola potens species 863643 0 867 1 genus 2282740 1 1466 0 Desulfotomaculum gibsoniae species 102134 1466 1 0 0 4911 5 36853 1 genus Desulfitobacterium 43 1986 1 0 species 49338 Desulfitobacterium hafniense 857 1 0 142877 species Desulfitobacterium metallireducens species 233055 0 981 1 Desulfitobacterium dichloroeliminans Desulfitobacterium dehalogenans 36854 species 1 1044 0 50 Dehalobacter genus 56112 1 0 4 3831 0 2 2527 no rank 2635733 Dehalobacter sp. CF 1131462 species 0 1 1360 1147129 species 0 1167 1 Dehalobacter sp. DCA species 55583 0 1 1254 Dehalobacter restrictus 3971 5 0 1 1562 genus Desulfotomaculum 59 species 59610 0 1 688 Desulfotomaculum reducens 1833852 species 1 875 0 Desulfotomaculum ferrireducens 1564 species 1 1459 0 Desulfotomaculum ruminis Desulfotomaculum nigrificans species 1565 0 1 890 genus 51514 0 1 1942 species 51515 0 1942 1 Dehalobacterium formicoaceticum 1000 1 0 2282742 genus Desulfotomaculum acetoxidans species 58138 1000 1 0 family 543349 1 0 3 2392 11 Symbiobacteriaceae 2733 1 genus 0 2381 2 11 Symbiobacterium Symbiobacterium thermophilum 1 2370 0 species 2734 Heliobacteriaceae 21 0 2424 3 family 31984 1 Heliobacterium 23 2403 2 0 genus 1 2697 Heliobacterium modesticaldum species 35701 1 2380 0 10 Oscillospiraceae family 1 216572 19863 3 0 459786 1 genus 0 2 19853 77 Oscillibacter 19776 1 0 species 351091 Oscillibacter valericigenes family 1 990719 18295 3 0 40 Christensenellaceae 990721 1 genus 0 2 18255 522 Christensenella Christensenella massiliensis 0 1 17733 1805714 species no rank 538999 0 10 217518 Clostridiales Family XIII. Incertae Sedis 1 2831 4 0 1 543314 family [Eubacterium] sulci 143393 species 0 1437 1 1 86331 genus 1393 2 0 2 Mogibacterium species 114527 0 1 1391 Mogibacterium diversum Clostridiales Family XVII. Incertae Sedis 18 0 1695 3 539000 1 family 2 1677 0 1 73918 genus Thermaerobacter 7 species 73919 0 1 1670 Thermaerobacter marianensis 2717089 genus 1 162245 0 Mordavella sp. Marseille-P3756 1 162245 0 species 2086584 600 Intestinimonas genus 1392389 1 0 2 50747 50147 1 0 species 1297617 Intestinimonas butyriciproducens 5 Eubacteriaceae family 186806 1 0 26912 4 genus 33951 1 1081 0 species 33952 1 1081 0 Acetobacterium woodii Eubacterium 655 25826 2 0 genus 1 1730 1736 species 25171 1 0 Eubacterium limosum Clostridiaceae 876 0 41 84041 family 31979 1 Candidatus Arthromitus 7 4 1684 0 1 49082 genus no rank 2638829 0 1677 3 1508644 species 0 579 1 Candidatus Arthromitus sp. SFB-mouse-NL Candidatus Arthromitus sp. SFB-mouse 574 1 0 species 49118 0 524 1 1041504 species Candidatus Arthromitus sp. SFB-rat-Yit 0 1847 2 genus 390805 1 Geosporobacter 6 Geosporobacter ferrireducens 1841 1 0 species 1424294 genus 1981033 0 1 118 Mordavella Clostridium 614 0 77967 30 1485 1 genus Clostridium cellulovorans 0 1878 1 1493 species 0 2344 1 species 1534 Clostridium kluyveri Clostridium cochlearium 1494 species 0 1 1091 0 2547 1 species 1492 Clostridium butyricum 0 1 1930 species 1561 Clostridium baratii Clostridium estertheticum 238834 species 1 1267 0 1 1888 0 1548 species Clostridium scatologenes Clostridium autoethanogenum species 84023 1522 1 0 Clostridium taeniosporum species 394958 1053 1 0 1513 species 1661 1 0 Clostridium tetani species 84022 1220 1 0 Clostridium aceticum 1625 1 0 species 1216932 Clostridium bornimense Clostridium pasteurianum species 1501 2536 1 0 1472 1 0 species 1538 Clostridium ljungdahlii 0 1 1081 species 1497 Clostridium formicaceticum species 1502 1 11981 0 Clostridium perfringens Clostridium novyi 1542 species 1 1053 0 1 1184 0 29341 species Clostridium argentinense 36745 species 0 1 2338 Clostridium saccharoperbutylacetonicum species 46867 979 1 0 Clostridium chauvoei 0 3555 1 species 1520 Clostridium beijerinckii species 217159 1605 1 0 Clostridium carboxidivorans 0 7344 1 1491 species Clostridium botulinum Clostridium sporogenes 1509 species 1 943 0 Clostridium saccharobutylicum 169679 species 1 2123 0 17179 2 0 2614128 no rank Clostridium sp. BNL1100 0 2116 1 755731 species Clostridium sp. SY8519 1042156 species 0 1 15063 species 1519 1000 1 0 Clostridium tyrobutyricum Clostridium acetobutylicum 954 1 0 species 1488 2 Alkaliphilus 1 114627 genus 1549 3 0 Alkaliphilus oremlandii species 461876 793 1 0 Alkaliphilus metalliredigens 1 754 0 species 208226 Peptostreptococcaceae 426 142146 12 0 1 186804 family 1411023 no rank 0 714 1 2081703 species 1 714 0 Peptostreptococcaceae bacterium oral taxon 929 1849828 1 genus 0 1645 2 1 Paeniclostridium Paeniclostridium sordellii 1505 species 0 1 1644 204 Clostridioides 1870884 1 genus 0 136589 2 Clostridioides difficile 1 136385 0 species 1496 Filifactor 2 0 807 2 44259 1 genus Filifactor alocis species 143361 0 805 1 1 1481960 genus 1157 2 0 2 Peptoclostridium Peptoclostridium acidaminophilum 1 1155 0 1731 species 2 Acetoanaerobium genus 186831 1 0 2 808 1511 species 1 806 0 Acetoanaerobium sticklandii 73 Negativicutes 1 909932 class 63955 31 0 order 1843489 1 0 11 22869 247 Veillonellales Veillonellaceae 319 0 10 22622 31977 1 family 2618 2 0 1 909928 genus Negativicoccus 3 Negativicoccus massiliensis species 1702287 2615 1 0 Dialister 20 0 2 6469 39948 1 genus Dialister pneumosintes 1 6449 0 39950 species 0 7251 2 906 1 genus Megasphaera 369 6882 1 0 907 species Megasphaera elsdenii 21 Veillonella 1 29465 genus 5965 3 0 Veillonella parvula 1 3852 0 29466 species Veillonella rodentium 0 1 2092 248315 species Selenomonadales 71 14 20646 0 1 909929 order 3278 4 0 family 1 1843490 Sporomusaceae 2 genus 365348 1 0 3 3276 10 Pelosinus Pelosinus fermentans species 365349 1457 1 0 2629460 no rank 0 1809 1 Pelosinus sp. UFO1 484770 species 0 1 1809 1 1843491 family 9 17297 0 111 Selenomonadaceae Megamonas 5 0 2103 2 genus 158846 1 Megamonas hypermegale 0 1 2098 species 158847 Selenomonas 151 0 15083 6 genus 970 1 0 5040 1 species 971 Selenomonas ruminantium 0 3 7077 2637378 no rank Selenomonas sp. oral taxon 920 1917 1 0 1884263 species Selenomonas sp. oral taxon 136 1 2450 0 713030 species 2710 1 0 712538 species Selenomonas sp. oral taxon 478 species 69823 2815 1 0 Selenomonas sputigena order 1 1843488 5 20367 0 63 Acidaminococcales 0 4 20304 family 909930 1 Acidaminococcaceae 23 904 1 genus 0 3 20281 46 Acidaminococcus 905 species 8143 1 0 Acidaminococcus fermentans 187327 species 12092 1 0 Acidaminococcus intestini Tissierellia 33 0 15659 18 class 1737404 1 no rank 1737407 2 507 0 Ezakiella 5 0 507 2 genus 1582879 1 species 1852374 0 502 1 Ezakiella massiliensis 114 Tissierellales 1 1737405 order 15 15119 0 2042895 family 2 800 0 genus 1505664 1 0 2 800 2 Gottschalkia Gottschalkia acidurici 1556 species 0 1 798 family 1 1570339 14205 12 0 2974 Peptoniphilaceae 2 1198 0 1 150022 genus Finegoldia 4 0 1194 1 1260 species Finegoldia magna 165779 1 genus 0 1256 3 5 Anaerococcus Anaerococcus prevotii 33034 species 0 1 677 574 1 0 1870984 species Anaerococcus mediterraneensis Parvimonas 5 0 905 2 543311 1 genus Parvimonas micra 0 900 1 species 33033 genus 162289 1 0 658 2 1 Peptoniphilus 1 657 0 no rank 2637196 1 657 0 1912856 species Peptoniphilus sp. ING2-D1G genus 1161127 1 0 2 7214 1 Murdochiella 1 7213 0 species 1852373 Murdochiella vaginalis 1113 2 0 no rank 33974 genus 1930845 1 0 2 1113 9 Ndongobacter species 1871025 0 1104 1 Ndongobacter massiliensis class 1676648 1 0 1349 5 11 Limnochordia 4 Limnochordales 1 1676649 order 1338 4 0 Limnochordaceae 7 0 1334 3 1676650 1 family 1 1676651 genus 1327 2 0 52 Limnochorda Limnochorda pilosa 1275 1 0 1555112 species 629 3 0 phylum 1930617 class 1962850 0 629 3 0 3 629 1962852 1 order Calditrichales 1 family 1962854 628 2 0 18 Caldithrix genus 187144 1 0 628 2 species 187145 0 610 1 Caldithrix abyssi 7 874 0 74152 phylum 0 2 229 641853 class 0 229 2 641854 order Elusimicrobiaceae 1 2 229 0 family 1 641876 228 1 0 423604 genus 228 1 0 species 423605 Elusimicrobium minutum 0 170 1 99260 no rank 0 1 170 species 167965 uncultured Termite group 1 bacterium 475 4 0 1 447830 class Endomicrobia 1 0 3 474 order 1783344 3 474 0 1 1783343 family Endomicrobiaceae 1 473 2 0 genus 1408194 Endomicrobium proavitum 0 1 293 1408281 species Candidatus Endomicrobium trichonymphae 0 1 180 1408204 species 2498710 clade 1 147 0 147 1 0 67814 phylum class 693071 1 147 0 147 1 0 693072 order 693073 family 0 147 1 147 1 0 693074 genus 693075 species 0 1 147 Caldisericum exile Proteobacteria 640 0 1496672 1976 1224 1 phylum 2442 7 0 1553900 class 0 5 1672 order 213481 1 Bdellovibrionales 2 family 213483 1 0 1670 4 4 Bdellovibrionaceae 1 958 genus 1666 3 0 8 Bdellovibrio Bdellovibrio bacteriovorus species 959 0 1493 1 species 453816 0 165 1 Bdellovibrio exovorus 0 2 770 2024979 order 0 194 1 family 1652132 1652133 genus 0 1 194 97084 species 0 1 194 Halobacteriovorax marinus 263369 family 0 576 1 576 1 0 146784 genus species 960 0 576 1 Bacteriovorax stolpii 0 348 285960 class 28216 1 Betaproteobacteria 675 0 11155 42 order 32003 1 Nitrosomonadales 102 Sterolibacteriaceae 69 0 5 2011 family 2008793 1 Sulfuritalea 20 2 1036 0 genus 1 1054211 Sulfuritalea hydrogenivorans 748811 species 0 1 1016 13 Methyloversatilis 378210 1 genus 0 906 2 0 893 1 2639971 no rank 0 1 893 1842540 species Methyloversatilis sp. RAC08 1198 4 0 family 2772226 0 633 2 1778653 1 genus Sulfuriferula 4 2637784 no rank 0 629 1 species 1985873 0 1 629 Sulfuriferula sp. AH1 0 565 2 935200 1 genus Sulfuricella 32 Sulfuricella denitrificans 0 1 533 649841 species 0 13 2168 32011 1 family Methylophilaceae 35 2 Methylobacillus 404 1 genus 0 295 2 Methylobacillus flagellatus species 405 293 1 0 3 891 0 genus 1 81682 Methylovorus 19 Methylovorus glucosotrophus 266009 species 412 1 0 no rank 2634027 1 460 0 Methylovorus sp. MP688 species 887061 0 1 460 1 359407 genus 422 3 0 1 Methylotenera 359408 species 0 249 1 Methylotenera mobilis Methylotenera versatilis species 1055487 0 172 1 0 2 272 1679002 genus 111 1 0 1581557 species Candidatus Methylopumilus planktonicus Candidatus Methylopumilus turicensis 0 161 1 1581680 species 1 16 genus 2 253 0 6 Methylophilus 247 1 0 2630143 no rank 1 247 0 1662285 species Methylophilus sp. TWE2 2 603 0 2008790 family Thiobacillus 20 603 2 0 genus 1 919 36861 species 0 583 1 Thiobacillus denitrificans 21 Gallionellaceae 90627 1 family 0 5 1717 genus 1 314343 1171 2 0 38 Sideroxydans Sideroxydans lithotrophicus 1 1133 0 species 63745 Gallionella 1 525 2 0 genus 1 96 370405 species 0 524 1 Gallionella capsiferriformans 0 3356 12 family 206379 1 Nitrosomonadaceae 18 1950 7 0 genus 1 914 Nitrosomonas 15 44574 species 288 1 0 Nitrosomonas communis 0 656 2 2609265 no rank 1 195 0 species 153948 Nitrosomonas sp. AL212 Nitrosomonas sp. Is79A3 species 261292 0 461 1 Nitrosomonas europaea 915 species 473 1 0 0 327 1 species 916 Nitrosomonas eutropha species 44577 1 191 0 Nitrosomonas ureae Nitrosospira 10 0 1388 4 35798 1 genus 1288494 species 1 476 0 Nitrosospira lacus 0 1 323 1231 species Nitrosospira multiformis species 35799 1 579 0 Nitrosospira briensis 0 1338 11 no rank 119066 19 Candidatus Accumulibacter genus 1 327159 2 696 0 Candidatus Accumulibacter phosphatis 327160 species 0 1 677 1301080 genus 1 12 0 Candidatus Nasuia deltocephalinicola 1160784 species 0 1 12 40 1 0 genus 1381133 669502 species 0 40 1 Candidatus Profftella armatura 189384 genus 7 1 0 Candidatus Tremblaya princeps 7 1 0 species 189385 Kinetoplastibacterium 6 0 583 6 33055 1 genus 0 1 56 species 994695 Candidatus Kinetoplastibacterium galatii species 994696 0 1 97 Candidatus Kinetoplastibacterium oncopeltii Candidatus Kinetoplastibacterium desouzaii 0 1 171 994692 species Kinetoplastibacterium blastocrithidii species 233181 1 65 0 0 1 188 species 33056 Candidatus Kinetoplastibacterium crithidii no rank 33809 0 2 969 beta proteobacterium CB 1 226 0 543913 species 0 1 743 species 1904640 Betaproteobacteria bacterium GR16-43 Burkholderiales 2873 234 231460 0 order 1 80840 Alcaligenaceae 325 44577 42 0 family 1 506 584 Bordetella 1 517 genus 17 19999 0 Bordetella pseudohinzii species 1331258 0 1 1483 Bordetella trematum 1404 1 0 species 123899 Bordetella petrii 94624 species 0 1228 1 Bordetella genomosp. 8 0 1165 1 1416806 species 0 1 1473 463024 species Bordetella genomosp. 6 Bordetella genomosp. 13 463040 species 0 1189 1 0 1 1559 species 463025 Bordetella bronchialis Bordetella holmesii species 35814 1 645 0 0 1 2159 518 species Bordetella bronchiseptica Bordetella pertussis 1024 1 0 species 520 521 species 715 1 0 Bordetella avium 1416803 species 0 1298 1 Bordetella genomosp. 9 Bordetella hinzii 1136 1 0 species 103855 463014 species 1 965 0 Bordetella flabilis 2630031 no rank 1 946 0 species 1697043 0 946 1 Bordetella sp. H567 1 1026 0 species 519 Bordetella parapertussis 29574 genus 2 395 0 Taylorella equigenitalis species 29575 1 120 0 Taylorella asinigenitalis 0 275 1 84590 species 1472344 genus 347 1 0 Basilea psittacipulmonis 1472345 species 0 1 347 305976 1 genus 0 2 609 7 Pusillimonas 2640016 no rank 1 602 0 602 1 0 species 1007105 Pusillimonas sp. T7-7 24 Orrella genus 1 1921582 2 1355 0 species 1851544 0 1331 1 Orrella dioscoreae Castellaniella 47 0 1426 2 359336 1 genus 1 1379 0 species 75697 Castellaniella defragrans Paenalcaligenes 2 212 2 0 genus 1 1100891 species 643674 1 210 0 Paenalcaligenes hominis Advenella 14 0 1279 3 290425 1 genus Advenella mimigardefordensis 0 1 716 species 302406 Advenella kashmirensis species 310575 1 549 0 16 Alcaligenes 507 1 genus 0 1592 2 0 1576 1 species 511 Alcaligenes faecalis Achromobacter 605 6 16723 0 1 222 genus 32002 species 0 3517 1 Achromobacter denitrificans 217203 species 0 1 2755 Achromobacter spanius 1 6704 0 85698 species Achromobacter xylosoxidans Achromobacter insolitus 0 1 1556 species 217204 1 1586 0 2626865 no rank 0 1586 1 species 1758194 Achromobacter sp. AONIH1 Oligella 2 2 315 0 1 90243 genus 90245 species 0 313 1 Oligella urethralis 0 12525 17 no rank 224471 30 Paucibacter genus 318147 1 0 2 1139 0 1109 1 2642959 no rank Paucibacter sp. KCTC 42545 species 1768242 0 1109 1 0 1100 2 316612 1 genus Methylibium 12 species 105560 0 1088 1 Methylibium petroleiphilum Roseateles 48 0 1505 2 genus 93681 1 species 76731 0 1457 1 Roseateles depolymerans 32 Thiomonas 1 32012 genus 1330 2 0 Thiomonas intermedia 1 1298 0 species 926 120 Mitsuaria genus 65047 1 0 1431 2 1311 1 0 2648776 no rank 1311 1 0 species 1658665 Mitsuaria sp. 7 69 Rhizobacter genus 212743 1 0 1273 2 Rhizobacter gummiphilus 1204 1 0 species 946333 1308 1 0 413882 species [Polyangium] brachysporum 77 Rubrivivax genus 28067 1 0 2 1827 Rubrivivax gelatinosus 0 1 1750 28068 species genus 88 1 0 1612 2 25 Leptothrix 1 1587 0 species 34029 Leptothrix cholodnii 0 12925 2 80841 no rank 1469502 species 1 685 0 Burkholderiales bacterium GJ-E10 Burkholderiales bacterium YL45 1834205 species 0 12240 1 Oxalobacteraceae 207 27410 29 0 1 75682 family Herminiimonas 8 3 1051 0 genus 1 303379 Herminiimonas arsenitoxidans 0 1 465 species 1809410 1 578 0 species 204773 Herminiimonas arsenicoxydans genus 149698 1 0 6 7737 171 Massilia Massilia sp. ZMN-3 1429 1 0 2072590 species Massilia putida 1682 1 0 1141883 species 2609279 no rank 3198 2 0 1954 1 0 1678028 species Massilia sp. NR 4-1 Massilia sp. WG5 species 1707785 1244 1 0 0 1 1257 species 2045208 Massilia sp. B2 genus 1 202907 3914 4 0 63 Collimonas 0 1202 1 species 279113 Collimonas pratensis 279058 species 0 1 1352 Collimonas arenae Collimonas fungivorans 158899 species 1297 1 0 Oxalobacter 3 0 2 732 genus 846 1 847 species 729 1 0 Oxalobacter formigenes 99 Janthinobacterium 29580 1 genus 0 7 6367 2610881 no rank 0 4 4030 Janthinobacterium sp. Marseille 375286 species 564 1 0 Janthinobacterium sp. LM6 0 1276 1 species 1938606 Janthinobacterium sp. B9-8 0 873 1 species 1236179 species 1644131 1 1317 0 Janthinobacterium sp. 1_2014MBL_MicDiv Janthinobacterium agaricidamnosum 1 896 0 species 55508 1342 1 0 368607 species Janthinobacterium svalbardensis genus 1 963 6 7402 0 171 Herbaspirillum 964 species 1 1787 0 Herbaspirillum seropedicae 341045 species 1 1326 0 Herbaspirillum hiltneri 1890 1 0 92645 species Herbaspirillum frisingense no rank 2624150 707 1 0 Herbaspirillum sp. meg3 0 707 1 species 2025949 species 80842 0 1521 1 Herbaspirillum rubrisubalbicans 1 119060 family 77623 84 0 611 Burkholderiaceae 493 4 0 genus 1 44013 Polynucleobacter 5 576610 species 0 108 1 Polynucleobacter necessarius Polynucleobacter asymbioticus 0 133 1 species 576611 0 1 247 species 1835254 Polynucleobacter duraquae genus 1822464 1 0 9881 12 208 Paraburkholderia Paraburkholderia terrae 935 1 0 311230 species species 948107 1123 1 0 Paraburkholderia sprentiae 2026199 species 0 795 1 Paraburkholderia aromaticivorans 252970 species 0 1 473 Paraburkholderia phenoliruptrix species 261302 0 820 1 Paraburkholderia phytofirmans Paraburkholderia fungorum 134537 species 0 705 1 no rank 2615204 0 719 1 Paraburkholderia sp. SOS3 1 719 0 species 1926494 1 839 0 species 148447 Paraburkholderia phymatum Paraburkholderia hospita species 169430 1196 1 0 Paraburkholderia xenovorans 1 797 0 36873 species Paraburkholderia caribensis 1 1271 0 species 75105 0 37003 41 genus 32008 1 Burkholderia 1832 41899 species 1 1367 0 Burkholderia plantarii 6566 11 0 2613784 no rank 0 752 1 species 1097668 Burkholderia sp. YI23 1468409 species 627 1 0 Burkholderia sp. 2002721687 1795874 species 509 1 0 Burkholderia sp. PAMC 28687 0 1 414 1795043 species Burkholderia sp. PAMC 26561 1740163 species 0 517 1 Burkholderia sp. Bp7605 Burkholderia sp. RPE67 1 730 0 species 758796 0 657 1 species 1740162 Burkholderia sp. Bp5365 Burkholderia sp. CCGE1001 1 427 0 species 640510 Burkholderia sp. CCGE1003 640512 species 0 663 1 Burkholderia sp. HB1 1678678 species 1 633 0 416344 species 0 637 1 Burkholderia sp. KJ006 0 1 1766 337 species Burkholderia glumae 18426 19 0 species group 87882 95486 species 2986 1 0 Burkholderia cenocepacia 1 1110 0 95485 species Burkholderia stabilis Burkholderia contaminans 1 556 0 488447 species Burkholderia dolosa 0 486 1 species 152500 Burkholderia cepacia 0 3435 1 species 292 491 1 0 488731 species Burkholderia seminalis species 488732 0 460 1 Burkholderia diffusa species 101571 1 1801 0 Burkholderia ubonensis species 1207504 0 447 1 Burkholderia pseudomultivorans 0 1 446 488446 species Burkholderia latens Burkholderia stagnalis 0 1 672 species 1503054 Burkholderia ambifaria 0 671 1 152480 species 265293 species 1 579 0 [Pseudomonas] mesoacidophila species 87883 1 1111 0 Burkholderia multivorans Burkholderia pyrrocinia 60550 species 448 1 0 482957 species 0 834 1 Burkholderia lata Burkholderia territorii 0 419 1 species 1503055 Burkholderia metallica 497 1 0 species 488729 Burkholderia vietnamiensis 60552 species 0 1 977 0 1820 1 28095 species Burkholderia gladioli species group 111527 5226 7 0 Burkholderia sp. MSMB0852 species 1637841 1 928 0 species 13373 0 289 1 Burkholderia mallei Burkholderia pseudomallei species 28450 0 1026 1 Burkholderia sp. MSMB0266 1637837 species 646 1 0 1637831 species 0 1 321 Burkholderia sp. MSMB617WGS species 57975 1 1419 0 Burkholderia thailandensis Burkholderia oklahomensis 1 597 0 species 342113 Cupriavidus 482 0 9 11780 genus 106589 1 0 1 2116 species 106590 Cupriavidus necator 2640874 no rank 2 3089 0 Cupriavidus sp. USMAA2-4 876364 species 1705 1 0 1389192 species 1384 1 0 Cupriavidus sp. USMAHM13 0 1425 1 68895 species Cupriavidus basilensis Cupriavidus gilardii species 82541 0 1 1043 0 1 1457 367825 species Cupriavidus sp. USMAA1020 248026 species 994 1 0 Cupriavidus pinatubonensis 1 1174 0 species 119219 Cupriavidus metallidurans 239 Ralstonia 1 48736 genus 9236 5 0 Ralstonia insidiosa 1348 1 0 species 190721 105219 species 1 1202 0 Ralstonia mannitolilytica 329 species 0 2043 1 Ralstonia pickettii Ralstonia solanacearum 4404 1 0 species 305 1 464 0 2571159 genus Paraburkholderia rhizoxinica 464 1 0 species 412963 genus 1827195 0 1 778 758793 species 0 778 1 Burkholderia sp. RPE64 genus 93217 1 0 7377 10 192 Pandoraea Pandoraea pulmonicola species 93221 0 608 1 93220 species 1 690 0 Pandoraea pnomenusa 1 763 0 species 93218 Pandoraea apista 656179 species 0 1 696 Pandoraea faecigallinarum Pandoraea sputorum 0 1 792 species 93222 Pandoraea norimbergensis species 93219 0 953 1 Pandoraea vervacti 1 929 0 species 656178 445709 species 701 1 0 Pandoraea thiooxydans Pandoraea oxalativorans 1053 1 0 573737 species 80864 1 family 0 59 53527 953 Comamonadaceae genus 1 52972 3 2138 0 9 Polaromonas Polaromonas naphthalenivorans species 216465 0 1 1107 0 1022 1 2638319 no rank 296591 species 0 1 1022 Polaromonas sp. JS666 genus 1 1649468 1248 2 0 41 Melaminivora 2641902 no rank 0 1 1207 species 2109913 1 1207 0 Melaminivora sp. SC2-9 9974 9 0 1 12916 genus Acidovorax 403 1 1374 0 80867 species Acidovorax avenae 810 1 0 species 721785 Acidovorax ebreus 0 4 4879 2684926 no rank 0 1 875 species 232721 Acidovorax sp. JS42 species 358220 1 1293 0 Acidovorax sp. KKS102 Acidovorax sp. RAC01 species 1842533 1 1869 0 0 842 1 species 1858609 Acidovorax sp. T1 species 553814 1172 1 0 Acidovorax sp. NA3 Acidovorax citrulli 80869 species 0 1336 1 1099 2 0 genus 1 238749 Diaphorobacter 6 Diaphorobacter polyhydroxybutyrativorans species 1546149 0 1 1093 133 Variovorax 34072 1 genus 0 5 6883 species 34073 3016 1 0 Variovorax paradoxus 0 2 2320 663243 no rank Variovorax sp. PMC12 species 2126319 0 1 1589 1795631 species 0 1 731 Variovorax sp. PAMC 28711 1414 1 0 species 436515 Variovorax boronicumulans 0 6434 5 genus 80865 1 Delftia 220 0 2 3133 no rank 2613839 Delftia sp. Cs1-4 742013 species 1 1713 0 Delftia sp. HK171 species 1920191 0 1 1420 species 80866 1 1535 0 Delftia acidovorans Delftia tsuruhatensis 0 1 1546 species 180282 0 2128 3 genus 219181 1 Ottowia 22 902 1 0 no rank 2645081 Ottowia sp. oral taxon 894 0 1 902 species 1658672 Ottowia sp. KADR8-3 0 1 1204 2109914 species 0 1 1192 genus 2678886 2116657 species 1 1192 0 Melaminivora sp. SC2-7 16 Verminephrobacter 1 364316 genus 2 1134 0 364317 species 1 1118 0 Verminephrobacter eiseniae 665874 1 genus 0 3 1007 5 Limnohabitans 2626134 no rank 0 1002 2 0 1 590 1678128 species Limnohabitans sp. 63ED37-2 0 412 1 species 1678129 Limnohabitans sp. 103DPR2 2 1458 0 1 201096 genus Alicycliphilus 5 species 179636 1 1453 0 Alicycliphilus denitrificans 0 585 2 genus 1436289 1 Candidatus Symbiobacter 1 0 1 584 species 1436290 Candidatus Symbiobacter mobilis 24 Rhodoferax genus 1 28065 5 3980 0 0 1 773 species 81479 Rhodoferax antarcticus Rhodoferax ferrireducens 192843 species 767 1 0 species 1842727 0 1505 1 Rhodoferax koreense Rhodoferax saidenbachensis 0 911 1 1484693 species 0 3268 4 genus 47420 1 Hydrogenophaga 30 2610897 no rank 2 2486 0 Hydrogenophaga sp. PBC species 795665 1299 1 0 Hydrogenophaga sp. RAC07 species 1842537 0 1187 1 752 1 0 1763535 species Hydrogenophaga crassostreae 17 Ramlibacter genus 1 174951 2244 2 0 Ramlibacter tataouinensis species 94132 2227 1 0 20 Comamonas 283 1 genus 0 5305 4 1 1854 0 species 225992 Comamonas kerstersii Comamonas serinivorans 1 984 0 1082851 species Comamonas testosteroni 1 2447 0 285 species 2 824 0 1 352450 genus Simplicispira 8 Simplicispira sp. SC1-8 1 816 0 2109915 species 1673 2 0 2490452 genus Comamonadaceae bacterium A1 1 697 0 species 1458425 Comamonadaceae bacterium B1 0 976 1 1458426 species order 206389 1 0 22 15309 260 Rhodocyclales 1 2008795 family 3 1100 0 28 Azonexaceae 2 1072 0 1 73029 genus Dechloromonas 18 Dechloromonas aromatica 1054 1 0 species 259537 0 4092 6 family 75787 1 Rhodocyclaceae 162 Azospira 70 0 2070 2 146937 1 genus species 146939 1 2000 0 Azospira oryzae 0 828 2 genus 551759 1 Aromatoleum 20 Aromatoleum aromaticum 808 1 0 species 551760 0 1 1032 no rank 75788 Rhodocyclaceae bacterium species 1898103 1032 1 0 Zoogloeaceae 195 0 9857 12 2008794 1 family 3803 5 0 genus 1 12960 Azoarcus 183 species 2067960 0 1 700 Azoarcus sp. SY39 no rank 2629479 2147 2 0 Azoarcus sp. CIB species 198107 0 1209 1 Azoarcus sp. KH32C 748247 species 1 938 0 Azoarcus olearius 418699 species 0 773 1 173 Thauera genus 1 33057 5859 6 0 Thauera chlorobenzoica 1 849 0 96773 species 59405 species 1 1102 0 Thauera aromatica 2 2731 0 2609274 no rank 2005884 species 0 1 1510 Thauera sp. K11 Thauera sp. MZ1T 85643 species 1 1221 0 0 1004 1 species 1134435 Thauera humireducens 283 Neisseriales 206351 1 order 0 36 25054 family 1499392 1 0 11519 13 157 Chromobacteriaceae 90153 no rank 0 4 6175 Chromobacterium 126 0 4 6175 535 1 genus 0 1 1607 2641838 no rank species 2059672 1607 1 0 Chromobacterium sp. ATCC 53434 Chromobacterium violaceum 1 1993 0 536 species 2449 1 0 species 1108595 Chromobacterium vaccinii 0 2 1340 187 1 genus Aquaspirillum 5 1335 1 0 no rank 2620219 Aquaspirillum sp. LM1 0 1 1335 species 1938604 1 568394 genus 1385 2 0 12 Pseudogulbenkiania no rank 2642558 1 1373 0 Pseudogulbenkiania sp. NH8B 1373 1 0 748280 species Laribacter 6 0 2 1460 168470 1 genus Laribacter hongkongensis 168471 species 1 1454 0 Jeongeupia 8 1002 2 0 genus 1 885864 no rank 2619593 1 994 0 Jeongeupia sp. USM3 species 1906741 0 1 994 Neisseriaceae 95 22 13252 0 family 1 481 1 538 genus 961 2 0 4 Eikenella 539 species 0 957 1 Eikenella corrodens genus 71 1 0 341 2 1 Simonsiella 72 species 340 1 0 Simonsiella muelleri 132 Neisseria 1 482 genus 9792 12 0 1853278 species 0 1 1179 Neisseria sp. 10023 2623750 no rank 2 1702 0 1853276 species 1 492 0 Neisseria sp. 10022 species 655307 0 1210 1 Neisseria sp. KEM232 0 1 842 species 486 Neisseria lactamica Neisseria mucosa 447 1 0 488 species Neisseria weaveri 1 752 0 28091 species 0 1 511 490 species Neisseria sicca Neisseria zoodegmatis 1 1012 0 species 326523 Neisseria elongata species 495 1 600 0 0 1 786 485 species Neisseria gonorrhoeae Neisseria meningitidis 1829 1 0 species 487 1193515 genus 461 1 0 461 1 0 species 1196083 Snodgrassella alvi 421605 no rank 0 1 286 0 1 286 species 2052837 Neisseriaceae bacterium DSM 100970 0 1316 3 59 1 genus Vitreoscilla 28 2627922 no rank 0 429 1 0 1 429 96942 species Vitreoscilla sp. C1 Vitreoscilla filiformis 859 1 0 63 species 0 5 1170 580370 class 11 Mariprofundales order 1 580371 5 1170 0 Mariprofundaceae 2 0 4 1159 580372 1 family 9 Mariprofundus genus 1 377315 3 1157 0 Mariprofundus ferrinatatus 487 1 0 1921087 species 1921086 species 0 1 661 Mariprofundus aestuarium 1741 6 0 1807140 class 30 Acidithiobacillales 225057 1 order 0 6 1741 1 225058 family 5 1711 0 4 Acidithiobacillaceae 0 4 1707 119977 1 genus Acidithiobacillus 52 1 494 0 species 920 Acidithiobacillus ferrooxidans species 160808 0 710 1 Acidithiobacillus ferrivorans species 33059 0 451 1 Acidithiobacillus caldus 1057 Alphaproteobacteria class 28211 1 0 295567 547 0 53528 88 204455 1 order Rhodobacterales 303 1113 Rhodobacteraceae family 31989 1 0 53225 87 3 Roseobacter genus 1 2433 3 749 0 Roseobacter litoralis 0 429 1 42443 species Roseobacter denitrificans 1 317 0 species 2434 1 1 0 genus 245186 Loktanella 300 1 0 genus 1284657 0 300 1 species 1284658 Planktomarina temperata 1278 2 0 genus 1 1097466 Defluviimonas 1 1 1277 0 1335048 species Defluviimonas alba 6 Ruegeria genus 97050 1 0 1688 3 2625375 no rank 679 1 0 species 292414 0 1 679 Ruegeria sp. TM1040 1 1003 0 species 89184 Ruegeria pomeroyi 0 1 532 74030 genus 532 1 0 species 215743 Roseovarius mucosus 558 2 0 genus 1 188905 Jannaschia 1 2645469 no rank 0 557 1 species 290400 1 557 0 Jannaschia sp. CCS1 4 Ketogulonicigenium 92944 1 genus 0 1125 3 Ketogulonicigenium robustum 1 623 0 species 92947 Ketogulonicigenium vulgare 498 1 0 species 92945 1066 2 0 1 367771 genus Marinovum 13 Marinovum algicola 1053 1 0 42444 species 0 1 765 2211641 genus Loktanella vestfoldensis species 245188 0 1 765 4 Rhodobaca genus 1 119541 2 529 0 441209 species 0 525 1 Rhodobaca barguzinensis 0 9 8685 265 1 genus Paracoccus 124 1945662 species 0 1 771 Paracoccus contaminans 246570 no rank 871 1 0 0 871 1 1529068 species Paracoccus sp. BM15 Paracoccus aminophilus 1 812 0 34003 species Paracoccus sp. CBA4604 1 961 0 species 2065379 Paracoccus zhejiangensis 1 994 0 species 1077935 Paracoccus denitrificans 266 species 0 1 1802 147645 species 0 1423 1 Paracoccus yeei Paracoccus aminovorans 1 927 0 species 34004 0 1 462 genus 1759396 462 1 0 no rank 2622455 Marivivens sp. JLT3646 1920883 species 1 462 0 1 299261 genus 2 539 0 3 Tateyamaria Tateyamaria omphalii 299262 species 536 1 0 1 768 0 1649279 genus species 379347 0 1 768 Ruegeria mobilis 90 Phaeobacter 1 302485 genus 4986 5 0 0 1616 1 221822 species Phaeobacter inhibens 0 1 443 species 1844006 Phaeobacter porticola species 60890 1 1566 0 Phaeobacter gallaeciensis 0 1 1271 1580596 species Phaeobacter piscinae 5 Thioclava 285107 1 genus 0 684 2 Thioclava nitratireducens 0 1 679 species 1915078 1 60136 genus 3 1650 0 5 Sulfitobacter 0 1 900 196795 no rank Sulfitobacter sp. AM1-D1 1 900 0 species 1917485 1 745 0 1402135 species Sulfitobacter pseudonitzschiae genus 263377 0 2142 2 0 1 1075 2640570 no rank 0 1 1075 species 1792508 Yangia sp. CCB-MM3 species 1229727 1 1067 0 Thiobacimonas profunda 0 1 1150 74032 genus species 74033 0 1150 1 Antarctobacter heliothermus Rhodovulum 38 2665 4 0 1 34008 genus 35806 species 0 1293 1 Rhodovulum sulfidophilum 0 2 1334 2631432 no rank 1 684 0 species 308754 Rhodovulum sp. MB263 Rhodovulum sp. P5 species 1564506 1 650 0 Thalassococcus 436357 genus 1 4 0 Dinoroseobacter 4 2 642 0 1 309512 genus species 215813 1 638 0 Dinoroseobacter shibae 1 360528 genus 2 1051 0 13 Pelagibaca Pelagibaca abyssi 1 1038 0 species 1250539 Labrenzia 38 0 2917 4 genus 478070 1 2648686 no rank 0 1833 2 Labrenzia sp. VG12 species 2021862 682 1 0 Labrenzia sp. CP4 1674922 species 0 1151 1 species 187304 0 1 1046 Labrenzia aggregata 27 Celeribacter genus 1 875170 5 2592 0 Celeribacter marinus 194 1 0 1397108 species Celeribacter indicus 1208324 species 0 938 1 species 1758178 1 635 0 Celeribacter ethanolicus Celeribacter manganoxidans 1411902 species 1 798 0 53945 genus 846 3 0 Octadecabacter temperatus 146 1 0 species 1458307 Octadecabacter arcticus species 53946 396 1 0 species 1217908 1 304 0 Octadecabacter antarcticus 227873 1 genus 0 2 1609 20 Pannonibacter 0 1589 1 species 121719 Pannonibacter phragmitetus 0 1387 2 58840 no rank Rhodobacteraceae bacterium 0 1 499 1904441 species Rhodobacteraceae bacterium QY30 1 888 0 2033435 species Rhodobacter 42 5 4622 0 genus 1 1060 no rank 196779 2 1554 0 Rhodobacter sp. LPB0142 1850250 species 1 661 0 Rhodobacter sp. CZR27 2033869 species 893 1 0 0 1 2082 species 1063 Rhodobacter sphaeroides 0 944 1 1061 species Rhodobacter capsulatus Halocynthiibacter 16 2 239 0 1 1579315 genus Halocynthiibacter arcticus 0 223 1 1579316 species 5 Leisingera 1 191028 genus 2 867 0 862 1 0 133924 species Leisingera methylohalidivorans 2 Sagittula genus 1 58842 1403 2 0 0 1 1401 no rank 2624628 1401 1 0 2009329 species Sagittula sp. P11 159345 genus 1 647 0 Roseibacterium elongatum species 159346 1 647 0 Confluentimicrobium 3 0 964 2 genus 1609958 1 1 961 0 2643318 no rank 961 1 0 1609966 species Confluentimicrobium sp. EMB200-NS6 1 204441 order 63 46494 0 759 Rhodospirillales Rhodospirillaceae 400 26956 29 0 family 1 41295 0 3 2269 1081 1 genus Rhodospirillum 32 species 1085 0 1 722 Rhodospirillum rubrum Rhodospirillum centenum 34018 species 1 1515 0 Thalassospira 15 0 3 1716 genus 168934 1 Thalassospira sp. CSC3H3 0 1 873 species 2048283 828 1 0 species 220697 Thalassospira xiamenensis genus 1543705 1 0 2 2412 19 Nitrospirillum Nitrospirillum amazonense 1 2393 0 species 28077 17 Pararhodospirillum 1 1612157 genus 2 700 0 Pararhodospirillum photometricum 0 1 683 1084 species 18 Niveispirillum 1543704 1 genus 0 1216 2 1612173 species 0 1198 1 Niveispirillum cyanobacteriorum Magnetospira 3 0 597 2 genus 1182780 1 no rank 2685734 0 594 1 Magnetospira sp. QH-2 1 594 0 species 1288970 9052 5 0 1 191 genus Azospirillum 188 192 species 0 2701 1 Azospirillum brasilense Azospirillum thiophilum species 528244 0 1 2055 0 938 1 species 1226968 Azospirillum humicireducens Azospirillum lipoferum 1 3170 0 species 193 0 182 1 1263978 genus 1263979 species 0 1 182 Candidatus Endolissoclinum faulkneri 1 416 0 1804663 genus Haematospirillum jordaniae 416 1 0 species 1549855 0 1526 2 genus 171436 1 Tistrella 26 1 1500 0 171437 species Tistrella mobilis Magnetospirillum 121 5 6470 0 genus 1 13134 no rank 2617991 3254 2 0 1 1580 0 species 1639348 Magnetospirillum sp. ME-1 1 1674 0 1663591 species Magnetospirillum sp. XM-1 Magnetospirillum gryphiswaldense 0 1583 1 55518 species species 84159 0 1 1512 Magnetospirillum magneticum Acetobacteraceae 271 33 18779 0 family 1 433 genus 1 89583 2 789 0 4 Gluconacetobacter 1 785 0 species 33996 Gluconacetobacter diazotrophicus 40 Neoasaia 1 320496 genus 2 317 0 Neoasaia chiangmaiensis 0 277 1 320497 species 61 Acidiphilium genus 1 522 1649 3 0 Acidiphilium cryptum 1 799 0 species 524 Acidiphilium multivorum species 62140 1 789 0 genus 1 1434011 3654 5 0 65 Komagataeibacter 0 584 1 265960 species Komagataeibacter nataicola 1 734 0 species 33995 Komagataeibacter europaeus Komagataeibacter medellinensis 0 1 584 species 1177712 Komagataeibacter xylinus 28448 species 0 1 1687 genus 441 1 0 3 1523 26 Gluconobacter species 318683 1 512 0 Gluconobacter albidus 0 1 985 442 species Gluconobacter oxydans 0 380 2 genus 153497 1 Kozakia 3 Kozakia baliensis species 153496 0 1 377 0 1 380 91914 genus Asaia bogorensis 380 1 0 91915 species genus 1 434 4750 8 0 175 Acetobacter subgenus 151157 0 707 1 1 707 0 435 species Acetobacter aceti 446692 species 0 1 464 Acetobacter senegalensis Acetobacter oryzifermentans 0 1 505 1633874 species 1 400 0 104102 species Acetobacter tropicalis 1 437 0 65959 species Acetobacter pomorum Acetobacter pasteurianus species 438 1564 1 0 Acetobacter persici 498 1 0 species 1076596 1602345 genus 0 799 1 Parasaccharibacter apium 1510841 species 0 799 1 85 Roseomonas genus 1 125216 3 2779 0 257708 species 1321 1 0 Roseomonas gilardii no rank 2617492 1 1373 0 Roseomonas sp. FDAARGOS_362 1 1373 0 2018065 species 1488 2 0 1 364409 genus Granulibacter 7 Granulibacter bethesdensis 364410 species 1481 1 0 54526 order 7 881 0 0 1 197 2045213 genus 0 197 1 species 1925548 Candidatus Fonsibacter ubiquis 1 Pelagibacteraceae family 1 1655514 684 6 0 316 2 0 1655516 no rank alpha proteobacterium HIMB5 859653 species 1 163 0 744985 species 0 153 1 alpha proteobacterium HIMB59 0 3 367 genus 198251 1 Candidatus Pelagibacter 1 1 265 0 no rank 2647897 Candidatus Pelagibacter sp. IMCC9063 1002672 species 0 1 265 0 101 1 198252 species Candidatus Pelagibacter ubique Rhizobiales 1445 0 209 124943 order 356 1 118882 1 family 0 5125 20 64 Brucellaceae Brucella 760 0 1982 14 genus 234 1 Brucella ceti 1 71 0 species 120577 species 120576 69 1 0 Brucella pinnipedialis 0 32 1 236 species Brucella ovis 1 15 0 444163 species Brucella microti Brucella melitensis 0 45 1 species 29459 29461 species 0 35 1 Brucella suis Brucella abortus 1 50 0 species 235 63 1 0 species 36855 Brucella canis 981386 species 0 126 1 Brucella vulpis 2632610 no rank 0 716 4 1885919 species 207 1 0 Brucella sp. 141012304 Brucella sp. 09RB8910 0 156 1 species 1844051 species 1891098 38 1 0 Brucella sp. 2002734562 Brucella sp. 09RB8471 1 315 0 species 1149952 genus 1 528 3079 5 0 21 Ochrobactrum Ochrobactrum sp. A44 271865 species 1 818 0 571256 species 1 747 0 Ochrobactrum pituitosum 1 770 0 529 species Ochrobactrum anthropi 723 1 0 species 419475 Ochrobactrum pseudogrignonense family 2036754 1 0 4 2058 12 Chelatococcaceae Chelatococcus 50 0 2046 3 genus 28209 1 1088 1 0 no rank 2638111 Chelatococcus sp. CO-6 0 1 1088 1702325 species Chelatococcus daeguensis species 444444 0 1 908 1 772 family 18 2864 0 8 Bartonellaceae Bartonella 28 2856 17 0 genus 1 773 Bartonella quintana 1 101 0 803 species Bartonella vinsonii 33047 species 0 1 105 no rank 2645622 0 562 6 1933912 species 73 1 0 Bartonella sp. Raccoon60 Bartonella sp. 1-1C 515256 species 0 82 1 species 1933907 0 1 113 Bartonella sp. JB63 Bartonella sp. A1379B 1933910 species 71 1 0 1933906 species 113 1 0 Bartonella sp. JB15 Bartonella sp. WD16.2 1 110 0 species 1933904 Bartonella clarridgeiae 56426 species 0 1 91 774 species 253 1 0 Bartonella bacilliformis 0 1 97 species 388640 Bartonella australis Bartonella grahamii 0 1 109 species 33045 species 1318743 0 1 261 Bartonella ancashensis Bartonella henselae 1 104 0 species 38323 0 1019 1 species 1686310 Bartonella apis species 85701 1 126 0 Bartonella tribocorum 511 Rhizobiaceae 82115 1 family 0 53 41021 2 Liberibacter 34019 1 genus 0 383 6 Candidatus Liberibacter africanus 0 124 1 34020 species 0 93 1 species 556287 Candidatus Liberibacter solanacearum Candidatus Liberibacter americanus 45 1 0 309868 species 1 73 0 species 1273132 Liberibacter crescens 0 1 46 34021 species Candidatus Liberibacter asiaticus no rank 227292 8219 10 0 Ensifer 15 3 1503 0 genus 1 106591 species 716925 1 728 0 Ensifer sojae Ensifer adhaerens 0 1 760 species 106592 94 Sinorhizobium genus 28105 1 0 6716 7 382 species 1 1572 0 Sinorhizobium meliloti 0 1 1674 species group 663276 Sinorhizobium fredii 1 1674 0 380 species 612 1 0 species 110321 Sinorhizobium medicae 0 1845 2 2613772 no rank Sinorhizobium sp. CCBAU 05631 1 684 0 species 794846 species 1842534 1 1161 0 Sinorhizobium sp. RAC02 Sinorhizobium americanum 0 919 1 species 194963 no rank 227290 30660 34 0 genus 379 1 0 25 21478 1665 Rhizobium 1 1780 0 396 species Rhizobium phaseoli species 398 1 1097 0 Rhizobium tropici 29449 species 0 2188 1 Rhizobium etli Rhizobium gallicum 0 1207 1 species 56730 Rhizobium leguminosarum species 384 0 4683 1 0 19 8858 no rank 2613769 490 1 0 species 1301032 Rhizobium sp. IE4771 Rhizobium sp. IRBG74 species 424182 1 556 0 Rhizobium sp. N731 1703966 species 1 186 0 1 3 0 species 1703960 Rhizobium sp. N113 1703967 species 0 1 1 Rhizobium sp. N741 species 1703968 1 1 0 Rhizobium sp. N871 2020312 species 0 1 706 Rhizobium sp. CIAT894 Rhizobium sp. Kim5 2020311 species 507 1 0 1703969 species 0 723 1 Rhizobium sp. N324 849 1 0 2028343 species Rhizobium sp. 10195 Rhizobium sp. TAL182 species 2020313 164 1 0 Rhizobium sp. NT-26 0 618 1 species 1125847 1107 1 0 1571470 species Rhizobium sp. ACO-34A Rhizobium sp. N1314 species 1703961 1 186 0 Rhizobium sp. N1341 1703962 species 1 2 0 671 1 0 species 1981173 Rhizobium sp. NXC14 1914541 species 1 511 0 Rhizobium sp. Y9 Rhizobium sp. S41 0 1 641 1869170 species Rhizobium sp. NXC24 2048897 species 0 1 936 genus 1 1525371 1879 2 0 9 Neorhizobium Neorhizobium galegae 0 1 1870 399 species genus 1 357 7 7303 0 162 Agrobacterium 1183400 species group 3964 2 0 Agrobacterium tumefaciens 358 species 0 3036 1 Agrobacterium fabrum 928 1 0 1176649 species Agrobacterium vitis species 373 1 887 0 1452 2 0 2632611 no rank Agrobacterium sp. RAC06 species 1842536 1 569 0 861208 species 883 1 0 Agrobacterium sp. H13-3 Agrobacterium rhizogenes 0 1 838 359 species Shinella 17 0 1248 2 genus 323620 1 0 1231 1 no rank 2643062 Shinella sp. HZN7 species 879274 1 1231 0 Rhodobiaceae 7 0 3 369 119043 1 family 28 Parvibaculum genus 256616 1 0 2 362 Parvibaculum lavamentivorans species 256618 0 334 1 31993 1 family 0 6 1627 10 Methylocystaceae 51 Methylocystis 133 1 genus 0 782 3 0 334 1 2625913 no rank 1 334 0 species 187303 Methylocystis sp. SC2 655015 species 1 397 0 Methylocystis bryophila Methylosinus 29 0 835 2 genus 425 1 Methylosinus trichosporium 426 species 0 1 806 family 45404 908 4 0 1 120652 genus 2 582 0 2 Methylocella 199596 species 1 580 0 Methylocella silvestris 326 2 0 1 532 genus Beijerinckia 5 species 533 0 1 321 Beijerinckia indica 22373 26 0 1 41294 family Bradyrhizobiaceae 306 0 11 11243 374 1 genus Bradyrhizobium 312 Bradyrhizobium diazoefficiens 1573 1 0 1355477 species 0 6 5792 no rank 2631580 1 960 0 species 114615 Bradyrhizobium sp. ORS 278 376 species 0 1 758 Bradyrhizobium sp. Bradyrhizobium sp. CCGE-LA001 0 1 873 species 1223566 932 1 0 115808 species Bradyrhizobium sp. ORS 285 2057741 species 1220 1 0 Bradyrhizobium sp. SK17 1 1049 0 species 288000 Bradyrhizobium sp. BTAi1 0 974 1 species 44255 Bradyrhizobium oligotrophicum 1 1759 0 375 species Bradyrhizobium japonicum 1 833 0 1274631 species Bradyrhizobium icense 116 Rhodopseudomonas genus 1073 1 0 2 5490 species 1076 0 5374 1 Rhodopseudomonas palustris genus 1 40136 551 2 0 19 Oligotropha Oligotropha carboxidovorans 0 1 532 species 40137 3 767 0 genus 1 911 Nitrobacter 13 Nitrobacter winogradskyi 0 1 375 913 species species 912 379 1 0 Nitrobacter hamburgensis Variibacter 7 0 453 2 genus 1649510 1 Variibacter gotjawalensis 0 1 446 1333996 species Bosea 63 0 3563 5 85413 1 genus Bosea vaviloviae species 1526658 970 1 0 3 2530 0 2653178 no rank Bosea sp. PAMC 26642 1792307 species 0 1 591 0 1 1038 species 2015316 Bosea sp. AS-1 Bosea sp. RAC05 0 901 1 1842539 species 2837 6 0 no rank 119042 Pseudorhodoplanes 21 832 2 0 genus 1 1734920 Pseudorhodoplanes sinuspersici 1235591 species 0 811 1 0 2 1025 1484898 1 genus Methyloceanibacter 9 Methyloceanibacter caenitepidi species 1384459 0 1016 1 Hartmannibacter 11 0 980 2 1572860 1 genus Hartmannibacter diazotrophicus 1482074 species 1 969 0 35 Xanthobacteraceae 1 335928 family 7 3699 0 0 1178 2 genus 6 1 Azorhizobium 34 species 7 0 1 1144 Azorhizobium caulinodans 19 Starkeya genus 152053 1 0 2 990 921 species 0 1 971 Starkeya novella 2 1496 0 1 279 genus Xanthobacter 17 1479 1 0 species 280 Xanthobacter autotrophicus 101 Hyphomicrobiaceae family 45401 1 0 8981 19 1 59282 genus 1196 2 0 67 Blastochloris 1129 1 0 species 1079 Blastochloris viridis 867 2 0 1 29407 genus Rhodoplanes 52 0 1 815 2619116 no rank Rhodoplanes sp. Z2-YC6860 species 674703 1 815 0 0 2 563 genus 1082930 1 Pelagibacterium 1 Pelagibacterium halotolerans 562 1 0 species 531813 46913 1 genus 0 2469 4 77 Devosia 196773 no rank 3 2392 0 1 795 0 species 1643450 Devosia sp. H5989 Devosia sp. I507 2083786 species 0 535 1 Devosia sp. A16 species 1736675 0 1062 1 genus 1068 1 0 2 1120 7 Rhodomicrobium Rhodomicrobium vannielii 0 1 1113 species 1069 genus 119044 1 0 234 2 3 Filomicrobium 231 1 0 1608628 species Candidatus Filomicrobium marinum Hyphomicrobium 24 0 4 2431 genus 81 1 Hyphomicrobium nitrativorans 1427356 species 0 1 1052 Hyphomicrobium denitrificans 1 780 0 species 53399 0 575 1 no rank 2619925 Hyphomicrobium sp. MC1 species 717785 575 1 0 80 Phyllobacteriaceae family 69277 1 0 20 12680 1 245876 genus 488 2 0 21 Nitratireductor Nitratireductor basaltis 0 1 467 species 472175 2 997 0 genus 1 28100 Phyllobacterium 4 993 1 0 species 1867719 Phyllobacterium zundukense Aminobacter 30 1050 2 0 1 31988 genus Aminobacter aminovorans 83263 species 0 1 1020 Chelativorans 5 0 2 756 449972 1 genus 0 751 1 2643807 no rank 751 1 0 species 266779 Chelativorans sp. BNC1 Hoeflea 22 594 2 0 genus 1 274591 2614931 no rank 0 572 1 Hoeflea sp. IMCC20628 species 1620421 1 572 0 Mesorhizobium 284 0 9 8715 68287 1 genus Mesorhizobium opportunistum 593909 species 0 1 1174 Mesorhizobium ciceri 1 1495 0 39645 species 1042 1 0 no rank 325217 species 278153 1042 1 0 Mesorhizobium sp. WSM1497 536018 species 1 835 0 Mesorhizobium australicum Mesorhizobium sp. B7 548 1 0 1670800 species species 71433 0 1205 1 Mesorhizobium amorphae Mesorhizobium japonicum 2066070 species 1108 1 0 Mesorhizobium loti 1 1024 0 381 species 87 Methylobacteriaceae 1 119045 family 15 15243 0 0 1314 2 186650 1 genus Microvirga 12 1882682 species 1 1302 0 Microvirga ossetica genus 2282523 5591 3 0 1 3076 0 species 408 Methylobacterium extorquens 0 1 1692 species 223967 Methylobacterium populi 0 823 1 species 29429 Methylobacterium zatmanii 372 Methylobacterium 407 1 genus 0 9 8251 418223 species 0 1 881 Methylobacterium phyllosphaerae Methylobacterium oryzae species 334852 1 912 0 Methylobacterium aquaticum 0 1 1090 species 270351 no rank 2615210 3 2861 0 species 925818 1 952 0 Methylobacterium sp. AMS5 0 1 906 species 1479019 Methylobacterium sp. C1 Methylobacterium sp. 4-46 0 1003 1 species 426117 Methylobacterium radiotolerans 31998 species 0 1055 1 species 114616 0 1080 1 Methylobacterium nodulans Aurantimonadaceae 28 3713 7 0 1 255475 family 1 414371 genus 853 2 0 16 Aureimonas 2615206 no rank 0 1 837 837 1 0 species 1349819 Aureimonas sp. AU20 4 2832 0 genus 1 293088 Martelella 47 no rank 2629616 920 1 0 Martelella sp. AD-3 0 920 1 686597 species 1486262 species 0 943 1 Martelella endophytica species 293089 0 922 1 Martelella mediterranea 1 Holosporales 1 1921002 order 481 6 0 4 Caedimonadaceae 1 2100208 family 137 2 0 0 1 133 genus 1509243 species 1509244 0 1 133 Candidatus Nucleicultrix amoebiphila 0 1 210 44746 family 204454 no rank 0 1 210 endosymbiont of Acanthamoeba sp. UWC8 86106 species 0 210 1 Candidatus Paracaedibacteraceae 3 2 133 0 family 1 1777752 1521255 genus 0 1 130 Candidatus Paracaedibacter acanthamoebae species 91604 0 1 130 Sphingomonadales 454 44767 81 0 1 204457 order 501 Sphingomonadaceae 41297 1 family 0 58 35185 33 Sphingorhabdus 1434046 1 genus 0 1315 3 0 1282 2 no rank 2614947 Sphingorhabdus sp. M41 species 1806885 0 677 1 1 605 0 2077182 species Sphingorhabdus sp. YGSMI21 146 Zymomonas 541 1 genus 0 782 2 0 636 1 542 species Zymomonas mobilis 1 150203 genus 2 554 0 12 Blastomonas 542 1 0 2626550 no rank 1 542 0 species 1842535 Blastomonas sp. RAC04 0 9984 15 genus 165695 1 Sphingobium 167 Sphingobium baderi 1332080 species 0 630 1 Sphingobium cloacae 0 686 1 120107 species Sphingobium chlorophenolicum 1 808 0 species 46429 Sphingobium hydrophobicum 0 1 961 1673076 species 0 1 574 332055 species Sphingobium indicum Sphingobium japonicum 332056 species 1 661 0 Sphingobium yanoikuyae 0 806 1 species 13690 6 4215 0 no rank 2611147 1 745 0 627192 species Sphingobium sp. SYK-6 1855519 species 1 404 0 Sphingobium sp. EP60837 0 1 814 species 484429 Sphingobium sp. YBL2 1 586 0 1843368 species Sphingobium sp. RAC03 0 811 1 407020 species Sphingobium sp. MI1205 0 855 1 1315974 species Sphingobium sp. TKS 1 476 0 76947 species Sphingobium herbicidovorans Sphingopyxis 95 0 4857 10 genus 165697 1 Sphingopyxis fribergensis 422 1 0 species 1515612 2614943 no rank 1528 4 0 1913578 species 0 1 152 Sphingopyxis sp. LPB0140 species 1866325 0 433 1 Sphingopyxis sp. MG 0 629 1 species 1357916 Sphingopyxis sp. QXT-31 Sphingopyxis sp. 113P3 species 292913 314 1 0 0 588 1 117207 species Sphingopyxis alaskensis 0 1 1118 33050 species Sphingopyxis macrogoltabida Sphingopyxis terrae 389 1 0 species 33052 species 267128 717 1 0 Sphingopyxis granuli genus 2709685 0 1 683 Sphingorhabdus flavimaris 266812 species 0 1 683 20 Citromicrobium 1 72173 genus 2 635 0 2630544 no rank 0 1 615 1 615 0 species 1634516 Citromicrobium sp. JL477 0 747 1 1649486 genus 0 1 747 species 1850238 Rhizorhabdus dicambivorans 0 5 3365 165696 1 genus Novosphingobium 44 1 616 0 species 48935 Novosphingobium aromaticivorans no rank 2644732 1 711 0 species 702113 0 711 1 Novosphingobium sp. PP1Y Novosphingobium pentaromativorans 0 1 1031 species 205844 Novosphingobium resinovorum species 158500 1 963 0 0 489 1 2685927 genus 1921510 species 489 1 0 Sphingomonas sp. JJ-A5 11273 15 0 genus 1 13687 Sphingomonas 264 2 1775 0 1 160791 species Sphingomonas wittichii 973 Sphingomonas sp. DC-6 0 802 1 1283312 strain 4631 6 0 196159 no rank species 1938607 721 1 0 Sphingomonas sp. LM7 Sphingomonas sp. MM-1 1009 1 0 species 745310 1 741 0 1030157 species Sphingomonas sp. KC8 1961362 species 0 689 1 Sphingomonas sp. NIC1 species 1327635 0 700 1 Sphingomonas sp. Cra20 771 1 0 1390395 species Sphingomonas sp. LK11 Sphingomonas melonis species 152682 0 751 1 Sphingomonas hengshuiensis 0 1 646 species 1609977 Sphingomonas panacis 1 683 0 1560345 species 93064 species 0 1 640 Sphingomonas koreensis Sphingomonas sanxanigenens 0 995 1 397260 species Sphingomonas taxi species 1549858 1 888 0 family 335929 1 0 9128 22 174 Erythrobacteraceae genus 361177 1 0 1680 4 42 Altererythrobacter 0 1 750 species 1267766 Altererythrobacter atlanticus species 476157 0 1 298 Altererythrobacter ishigakiensis Altererythrobacter epoxidivorans 361183 species 0 590 1 genus 1855416 1043 2 0 Erythrobacter seohaensis 266951 species 1 674 0 species 192812 0 369 1 Erythrobacter flavus 0 368 1 2800685 genus Altererythrobacter marensis 368 1 0 543877 species 2800686 genus 0 746 2 Altererythrobacter dongtanensis 0 1 386 692370 species Altererythrobacter mangrovi species 1982042 0 1 360 0 843 2 2800681 genus 1648404 species 0 367 1 Erythrobacter atlanticus 502682 species 0 1 476 Erythrobacter gangjinensis genus 2800682 1 623 0 Altererythrobacter namhicola 645517 species 0 623 1 12 Croceicoccus 1 1295327 genus 3 1185 0 species 1348774 0 1 530 Croceicoccus naphthovorans species 450378 0 643 1 Croceicoccus marinus no rank 2800788 6 2466 0 genus 1111 1 0 3 1137 112 Porphyrobacter 2683265 no rank 1025 2 0 1896196 species 1 368 0 Porphyrobacter sp. LM 6 Porphyrobacter HT-58-2 2023229 species 0 1 657 genus 1 1041 1329 3 0 53 Erythrobacter Porphyrobacter neustonensis species 1112 497 1 0 39960 species 0 1 779 Erythrobacter litoralis 5 Magnetococcales 1 1191478 order 528 3 0 2 523 0 family 1191479 Magnetococcus 12 523 2 0 1 162171 genus 0 1 511 species 1124597 Magnetococcus marinus 0 51 3717 order 766 1 Rickettsiales 3 942 family 0 22 1561 6 513 0 1 943 genus Ehrlichia 1 399 4 0 106178 species group 0 80 1 945 species Ehrlichia chaffeensis Ehrlichia muris 1 81 0 species 35795 Ehrlichia ruminantium 779 species 84 1 0 Ehrlichia canis species 944 1 154 0 106181 no rank 113 1 0 Ehrlichia sp. HF 0 1 113 species 391036 Neorickettsia 6 0 201 4 genus 33993 1 1 43 0 species 950 Neorickettsia risticii Neorickettsia helminthoeca 0 114 1 33994 species 0 38 1 species 951 Neorickettsia sennetsu tribe 952 8 589 0 Wolbachia 8 8 589 0 genus 1 953 7 581 0 no rank 2640676 1 40 0 100901 species Wolbachia endosymbiont of Onchocerca ochengi Wolbachia endosymbiont of Brugia malayi species 80849 0 1 36 Wolbachia endosymbiont of Drosophila melanogaster 64 1 0 species 163164 Wolbachia endosymbiont of Drosophila simulans 0 1 246 species 77038 1 69 0 species 66084 Wolbachia sp. wRi species 246273 1 83 0 Wolbachia endosymbiont of Cimex lectularius 1 43 0 species 77551 Wolbachia endosymbiont of Onchocerca volvulus 1 Anaplasma 1 768 genus 4 258 0 106179 species group 153 1 0 0 1 153 948 species Anaplasma phagocytophilum 53 1 0 species 769 Anaplasma centrale Anaplasma marginale species 770 1 51 0 1915 26 0 1 775 family Rickettsiaceae 3 tribe 33988 24 1777 0 261 Rickettsia genus 1 780 23 1497 0 species group 114292 2 314 0 0 1 251 species 785 Rickettsia typhi 782 species 0 63 1 Rickettsia prowazekii 0 1 96 no rank 114295 Rickettsia endosymbiont of Bemisia tabaci 96 1 0 species 337479 species group 114277 664 17 0 Rickettsia parkeri 0 8 1 species 35792 Rickettsia amblyommatis 33989 species 32 1 0 9 1 0 species 35794 Rickettsia slovaca Rickettsia australis 787 species 175 1 0 21 1 0 781 species Rickettsia conorii 226665 species 0 1 13 Rickettsia heilongjiangensis 11 1 0 species 35790 Rickettsia japonica species 42862 0 62 1 Rickettsia felis species 35788 0 1 14 Rickettsia africae Rickettsia peacockii species 47589 54 1 0 Rickettsia montanensis 33991 species 1 16 0 Rickettsia rhipicephali 33992 species 0 1 15 Rickettsia rickettsii 783 species 1 29 0 Rickettsia akari 786 species 84 1 0 Rickettsia massiliae 9 1 0 species 35791 1 10 0 species 1105106 Rickettsia philipii 109232 species 0 102 1 Rickettsia monacensis 0 162 2 1129742 species group Rickettsia bellii 112 1 0 33990 species Rickettsia canadensis 50 1 0 species 788 genus 69474 280 1 0 1 280 0 species 784 Orientia tsutsugamushi 0 135 1 genus 2115980 species 2115978 0 135 1 Candidatus Phycorickettsia trachydisci family 1328881 91 1 0 1 91 0 411566 genus Candidatus Midichloria mitochondrii 234827 species 91 1 0 no rank 1699067 147 1 0 Rickettsiales bacterium Ac37b 1 147 0 1528098 species 119 Caulobacterales 1 204458 order 20 14118 0 Caulobacteraceae 346 13999 19 0 1 76892 family 0 7 4404 41275 1 genus Brevundimonas 92 820 1 0 74313 species Brevundimonas subvibrioides 0 3 2393 2622653 no rank Brevundimonas sp. DS20 1532555 species 0 1 755 0 932 1 1938605 species Brevundimonas sp. LM2 1827469 species 0 706 1 Brevundimonas sp. GW460-12-10-14-LB2 Brevundimonas vesicularis species 41276 0 471 1 species 588932 0 1 628 Brevundimonas naejangsanensis Asticcacaulis 23 2 986 0 genus 1 76890 Asticcacaulis excentricus 963 1 0 species 78587 0 6 6905 75 1 genus Caulobacter 131 1017 1 0 species 69666 Caulobacter mirabilis 155892 species 2129 1 0 Caulobacter vibrioides 0 1 1578 no rank 2648921 Caulobacter sp. K31 366602 species 1578 1 0 Caulobacter henricii 1 859 0 species 69395 Caulobacter segnis species 88688 1 1191 0 0 1 247 81440 no rank Caulobacteraceae bacterium OTSz_A_272 species 1759059 0 1 247 2 1111 0 genus 1 20 Phenylobacterium 68 1 1043 0 species 284016 Phenylobacterium zucineum 6 Parvularculales 1 255473 order 238 4 0 1 255474 family 232 3 0 2 Parvularculaceae Parvularcula 66 2 230 0 1 208215 genus Parvularcula bermudensis 164 1 0 species 208216 2800060 order 1352 5 0 11 Hyphomonadaceae family 69657 1 0 5 1352 321 1 0 2723 genus Hirschia baltica 1 321 0 species 2724 genus 85 1 0 3 1020 2 Hyphomonas species 81032 0 565 1 Hyphomonas neptunium 2630699 no rank 453 1 0 1 453 0 1906738 species Hyphomonas sp. Mor2 order 2800059 2 645 0 2800061 family 0 2 645 Maricaulis 4 0 645 2 74317 1 genus Maricaulis maris 74318 species 1 641 0 0 2818 7 no rank 82117 Micavibrio 3 2 734 0 1 213485 genus Micavibrio aeruginosavorus 0 1 731 species 349221 258 1 0 clade 62654 0 1 258 genus 767891 258 1 0 767892 species Candidatus Puniceispirillum marinum 10 Polymorphum 1 991903 genus 851 2 0 Polymorphum gilvum species 991904 841 1 0 54 Phreatobacter 1 1632780 genus 2 975 0 Phreatobacter sp. S-12 1 921 0 1868589 species 68525 subphylum 188 142966 0 Deltaproteobacteria 235 121 111950 0 class 1 28221 0 4 541 213113 order 0 4 541 family 117942 1 Hippea genus 84404 1 0 277 2 Hippea maritima 276 1 0 84405 species 0 264 2 33001 1 genus Desulfurella 1 Desulfurella acetivorans 33002 species 0 1 263 Syntrophobacterales 51 10 2735 0 order 1 213462 3 926 0 1 213465 family Syntrophobacteraceae 5 2 Syntrophobacter 1 29526 genus 2 921 0 Syntrophobacter fumaroxidans 0 919 1 species 119484 1 213468 family 6 1758 0 4 Syntrophaceae 0 645 2 genus 43773 1 Syntrophus 8 Syntrophus aciditrophicus 637 1 0 species 316277 2357 1 genus 0 566 2 3 Desulfomonile 563 1 0 2358 species Desulfomonile tiedjei 60892 genus 543 1 0 0 543 1 60893 species Desulfobacca acetoxidans Myxococcales 406 33261 38 0 1 29 order 224462 suborder 0 1691 3 Kofleriaceae 8 0 1691 3 224464 1 family genus 162027 1 0 2 1683 36 Haliangium 1647 1 0 species 80816 Haliangium ochraceum 0 8 6312 80812 suborder 0 3 1197 family 1055686 1 Sandaracinaceae 26 Sandaracinus 19 0 1171 2 1055688 1 genus Sandaracinus amylolyticus 0 1 1152 927083 species Polyangiaceae 131 5 5115 0 1 49 family 2 1216 0 genus 1 50 Chondromyces 4 Chondromyces crocatus 1 1212 0 52 species Sorangium 73 0 3768 2 39643 1 genus Sorangium cellulosum 0 3695 1 56 species 80811 suborder 26 24852 0 family 31 1 0 9 11640 63 Myxococcaceae Corallococcus 56 0 3 3724 83461 1 genus Myxococcus macrosporus 0 1648 1 35 species Corallococcus coralloides 184914 species 0 1 2020 1 32 genus 7853 5 0 253 Myxococcus Myxococcus fulvus 0 3197 1 33 species species 83455 0 1416 1 Myxococcus stipitatus Myxococcus hansupus species 1297742 1610 1 0 34 species 1377 1 0 Myxococcus xanthus Anaeromyxobacteraceae 33 5 4511 0 1 1524215 family Anaeromyxobacter 132 4478 4 0 genus 1 161492 Anaeromyxobacter dehalogenans 1 1852 0 species 161493 0 2 2494 no rank 2620896 1223 1 0 species 404589 Anaeromyxobacter sp. Fw109-5 species 447217 1 1271 0 Anaeromyxobacter sp. K Vulgatibacteraceae 10 0 3 768 1524213 1 family 7 Vulgatibacter 1524214 1 genus 0 758 2 Vulgatibacter incomptus 1391653 species 751 1 0 9 7933 0 1 39 family Archangiaceae 130 47 1 genus 0 2213 2 10 Archangium Archangium gephyra 0 1 2203 species 48 8 Melittangium 44 1 genus 0 1570 2 1562 1 0 species 83453 Melittangium boletus 42 1 genus 0 2 2352 14 Cystobacter Cystobacter fuscus 43 species 1 2338 0 Stigmatella 7 2 1668 0 1 40 genus Stigmatella aurantiaca 0 1 1661 41 species 23 41915 0 1 213115 order Desulfovibrionales 439 0 37681 17 194924 1 family Desulfovibrionaceae 156 1 1738 0 genus 2582840 Desulfovibrio africanus 873 species 0 1 1738 genus 41707 1 821 0 Lawsonia intracellularis 29546 species 821 1 0 genus 872 1 0 28915 9 188 Desulfovibrio 58180 species 0 1 1743 Desulfovibrio alaskensis Desulfovibrio desulfuricans 876 species 4855 1 0 901 species 1 4926 0 Desulfovibrio piger 8174 1 0 881 species Desulfovibrio vulgaris no rank 2593640 1 2009 0 0 2009 1 species 631220 Desulfovibrio sp. G11 Desulfovibrio magneticus species 184917 1 2358 0 1 727 0 1725232 species Candidatus Desulfovibrio trichonymphae 0 1 3935 44742 species Desulfovibrio fairfieldensis 4 5299 0 1 2035811 genus Pseudodesulfovibrio 41 Pseudodesulfovibrio indicus 1716143 species 0 2549 1 Pseudodesulfovibrio profundus species 57320 0 621 1 Pseudodesulfovibrio aespoeensis 0 2088 1 species 182210 0 752 1 genus 2794998 880 species 1 752 0 Desulfovibrio salexigens 3292 4 0 family 1 213116 Desulfomicrobiaceae 52 3240 3 0 1 898 genus Desulfomicrobium 23 Desulfomicrobium orale 0 1477 1 species 132132 Desulfomicrobium baculatum species 899 1 1740 0 1 503 0 213117 family 45662 genus 0 503 1 0 1 503 45663 species Desulfohalobium retbaense 51 Desulfobacterales 1 213118 order 17 8373 0 family 213119 1 0 8 4647 54 Desulfobacteraceae 1197 1 0 218207 genus Desulfatibacillum alkenivorans 1 1197 0 species 259354 Desulfobacterium 1 0 2 836 2295 1 genus Desulfobacterium autotrophicum 0 835 1 2296 species 0 1 663 28222 genus Desulfobacula toluolica 663 1 0 28223 species 47 Desulfococcus 1 896 genus 1897 3 0 915 1 0 species 181663 Desulfococcus oleovorans 935 1 0 species 897 Desulfococcus multivorans 213121 1 family 0 8 3675 13 Desulfobulbaceae genus 1 53318 2 424 0 2 Desulfocapsa Desulfocapsa sulfexigens 0 422 1 65555 species 3 Desulfobulbus genus 1 893 2 1556 0 Desulfobulbus sp. ORNL 0 1553 1 1986146 species Desulfurivibrio 5 0 1414 2 genus 427922 1 0 1 1409 species 427923 Desulfurivibrio alkaliphilus genus 109168 268 1 0 0 1 268 84980 species Desulfotalea psychrophila Desulfarculales 24 0 4 1979 order 453227 1 family 453228 1 0 3 1955 17 Desulfarculaceae Desulfarculus 24 1938 2 0 1 453229 genus Desulfarculus baarsii 1 1914 0 453230 species 302 Desulfuromonadales 69541 1 order 0 24 22911 114 Geobacteraceae 1 213422 family 14 15412 0 1 28231 genus 13878 11 0 202 Geobacter species 351604 1303 1 0 Geobacter uraniireducens Geobacter lovleyi 0 1286 1 313985 species 2 3552 0 no rank 2627627 Geobacter sp. M21 1 1245 0 species 443144 Geobacter sp. M18 species 443143 0 2307 1 Geobacter metallireducens 28232 species 1 1151 0 225194 species 0 1 1593 Geobacter bemidjiensis Geobacter pickeringii 1407 1 0 species 345632 Geobacter sulfurreducens 0 1343 1 species 35554 1 1171 0 species 1340425 Geobacter anodireducens Geobacter daltonii 0 1 870 1203471 species Geoalkalibacter 2 0 1420 2 genus 392332 1 0 1418 1 species 483547 Geoalkalibacter subterraneus 1 213421 family 9 7197 0 93 Desulfuromonadaceae 21 Desulfuromonas genus 1 890 3 2607 0 Desulfuromonas soudanensis 1603606 species 1 1337 0 0 1249 1 no rank 2614637 1249 1 0 species 1823759 Desulfuromonas sp. DDH964 Pelobacter 55 4497 5 0 1 18 genus Pelobacter carbinolicus species 19 1062 1 0 Pelobacter propionicus 1 1521 0 species 29543 0 947 1 no rank 2620299 Pelobacter sp. SFB93 0 1 947 species 1842532 Pelobacter acetylenicus species 29542 0 1 912 Epsilonproteobacteria 50 0 31016 67 class 29547 1 64 30328 0 order 1 213849 Campylobacterales 412 Campylobacteraceae 1431 41 24308 0 family 1 72294 genus 57665 1 0 9 2191 42 Sulfurospirillum 2618290 no rank 3 902 0 Sulfurospirillum sp. JPD-1 0 142 1 220622 species Sulfurospirillum sp. SL2-1 species 1986224 1 286 0 species 1581011 0 474 1 Sulfurospirillum sp. UCH001 0 1 281 66821 species Sulfurospirillum multivorans Sulfurospirillum cavolei 1 261 0 366522 species Sulfurospirillum barnesii species 44674 0 187 1 65553 species 201 1 0 Sulfurospirillum deleyianum 0 317 1 194424 species Sulfurospirillum halorespirans 26 18686 0 genus 1 194 Campylobacter 191 Campylobacter sputorum species 206 438 1 0 Campylobacter curvus 178 1 0 200 species 2593542 no rank 1175 4 0 0 395 1 1660076 species Campylobacter sp. RM12175 1 377 0 1660074 species Campylobacter sp. RM8964 Campylobacter sp. RM6137 0 1 105 species 1660073 0 1 298 1500960 species Campylobacter sp. RM16704 Campylobacter avium 0 78 1 species 522485 0 1 172 1031542 species Campylobacter volucris 0 5951 1 species 197 Campylobacter jejuni Campylobacter cuniculorum 1 210 0 species 374106 species 195 1 6370 0 Campylobacter coli Campylobacter subantarcticus 0 1 250 species 497724 Campylobacter lanienae 75658 species 1 352 0 Campylobacter fetus species 196 0 1 392 Campylobacter peloridis 1 204 0 species 488546 Campylobacter ureolyticus 1 258 0 species 827 Campylobacter hyointestinalis 0 220 1 198 species Campylobacter hominis 0 1 151 species 76517 Campylobacter gracilis 1 386 0 824 species Campylobacter iguaniorum 1 178 0 species 1244531 238 1 0 species 1965231 Campylobacter pinnipediorum species 260714 221 1 0 Campylobacter insulaenigrae Campylobacter concisus 199 species 0 287 1 Campylobacter helveticus 0 1 198 species 28898 1 588 0 201 species Campylobacter lari no rank 2321108 2000 5 0 Arcobacter 5 0 993 3 genus 28196 1 Arcobacter butzleri species 28197 593 1 0 0 395 1 28199 species Arcobacter nitrofigilis 2321187 genus 1 484 0 species 1850254 484 1 0 Arcobacter sp. LPB0137 no rank 2321207 1 523 0 0 523 1 species 944547 Arcobacter sp. L family 2771472 0 4 1409 269260 genus 0 1 606 Nitratifractor salsuginis 1 606 0 species 269261 5 Sulfurovum 1 265570 genus 3 803 0 2646778 no rank 1 385 0 385 1 0 387093 species Sulfurovum sp. NBC37-1 0 413 1 206403 species Sulfurovum lithotrophicum 72293 1 family 0 14 3215 4 Helicobacteraceae genus 843 1 256 0 844 species 1 256 0 Wolinella succinogenes Helicobacter 1 12 2955 0 genus 1 209 0 1 119 214 species Helicobacter felis Helicobacter bilis species 37372 1 100 0 212 species 0 88 1 Helicobacter acinonychis Helicobacter himalayensis 0 91 1 1591088 species Helicobacter pylori 210 species 0 1513 1 217 species 1 151 0 Helicobacter mustelae 76936 species 1 160 0 Helicobacter typhlonius Helicobacter hepaticus 0 135 1 32025 species 2593540 no rank 0 1 135 222136 species 0 135 1 Helicobacter sp. MIT 01-6242 Helicobacter cetorum species 138563 0 190 1 species 213 0 1 272 Helicobacter cinaedi 2771471 family 0 4 984 Sulfurimonas 7 0 631 3 genus 202746 1 Sulfurimonas autotrophica species 202747 0 1 238 Sulfurimonas denitrificans 0 1 386 species 39766 286130 genus 353 1 0 148813 species 1 353 0 Sulfuricurvum kujiense order 235899 0 638 2 0 477 1 224467 family 0 1 477 genus 191291 0 1 477 244787 species Nautilia profundicola 0 161 1 2795691 family 1 161 0 269258 genus 161 1 0 2624044 no rank 161 1 0 387092 species Nitratiruptor sp. SB155-2 1316 Gammaproteobacteria class 1236 1 0 874 766186 order 1 1692040 1516 6 0 38 Acidiferrobacterales 21 Acidiferrobacteraceae 1 1692041 family 1478 5 0 Sulfuricaulis 26 0 944 2 1744881 1 genus Sulfuricaulis limicola species 1620215 1 918 0 513 2 0 genus 1 1692042 Sulfurifustis 13 Sulfurifustis variabilis 0 1 500 species 1675686 1775403 order 0 3 513 0 2 500 family 2689614 2 500 0 1 469322 genus Steroidobacter 4 species 465721 0 1 496 Steroidobacter denitrificans Sinobacteraceae 1 13 0 family 568386 1 72273 order 6287 31 0 14 Thiotrichales 3 Thiotrichaceae 135617 1 family 0 3 383 109 1 0 genus 40751 Thioploca ingrica 109 1 0 40754 species 1021 genus 0 1 271 species 288004 1 271 0 Beggiatoa leptomitoformis 0 14 3466 family 34064 1 Francisellaceae 9 19 Francisella genus 1 262 12 3350 0 657445 species 0 1 310 Francisella noatunensis Francisella sp. TX077310 573570 species 0 1 286 Francisella hispaniensis 1 217 0 species 622488 Francisella sp. TX077308 163 1 0 573569 species Francisella tularensis 263 species 0 1 727 Francisella halioticida species 549298 371 1 0 Francisella persica 0 1 137 species 954 Francisella sp. CA97-1460 0 1 211 1542390 species 2 226 0 2610885 no rank 475375 species 88 1 0 Francisella sp. MA067296 species 1547445 1 138 0 Francisella sp. FSC1006 Francisella philomiragia 28110 species 0 683 1 0 1 107 1869285 genus 1 107 0 594679 species Allofrancisella guangzhouensis 25 Piscirickettsiaceae family 1 135616 2424 13 0 1 Methylophaga genus 1 40222 658 3 0 Methylophaga frappieri 0 220 1 754477 species Methylophaga nitratireducenticrescens 0 437 1 species 754476 0 360 1 1237 genus 1238 species 0 1 360 Piscirickettsia salmonis Hydrogenovibrio 1 2 597 0 genus 1 28884 1 596 0 species 39765 Hydrogenovibrio crunogenus genus 34067 3 361 0 0 277 2 no rank 2621467 1 162 0 species 728003 Cycloclasticus sp. PY97N 385025 species 1 115 0 Cycloclasticus sp. P1 Cycloclasticus zancles 0 1 84 species 1329899 Thiomicrospira 2 3 423 0 1 933 genus Thiomicrospira aerophila 0 1 269 92245 species species 147268 0 152 1 Thiomicrospira cyclica order 1934945 1 0 4 799 3 Immundisolibacterales Immundisolibacteraceae 20 796 3 0 1 1934946 family genus 1 1934947 2 776 0 7 Immundisolibacter 0 769 1 species 1810504 Immundisolibacter cernigliae Legionellales 4 19 4063 0 1 118969 order 10 Legionellaceae 1 444 family 3570 14 0 465 genus 1 128 0 Tatlockia micdadei species 451 0 128 1 1 445 genus 12 3432 0 6 Legionella Legionella spiritensis 452 species 0 1 276 Legionella waltersii 1 164 0 species 66969 Legionella endosymbiont of Polyplax serrata 2005262 species 0 65 1 Legionella pneumophila 1 1087 0 446 species 1 133 0 45067 species Legionella lansingensis Legionella clemsonensis 1 423 0 1867846 species Legionella fallonii 96230 species 0 1 120 28087 species 0 1 498 Legionella sainthelensi Legionella longbeachae species 450 0 1 206 Legionella hackeliae 1 262 0 449 species Legionella oakridgensis 0 192 1 species 29423 family 1 118968 4 489 0 8 Coxiellaceae 0 437 2 genus 776 387 1 0 species 777 Coxiella burnetii 2676648 no rank 0 50 1 Coxiella endosymbiont of Amblyomma americanum 0 1 50 species 325775 1 44 0 no rank 134284 Coxiella-like endosymbiont 44 1 0 1592897 species Methylococcales 50 5573 11 0 1 135618 order Methylococcaceae 139 0 10 5523 family 403 1 39773 genus 0 1 542 0 1 542 species 271065 Methylomicrobium alcaliphilum 762296 genus 419 1 0 Methylovulum psychrotolerans 1 419 0 1704499 species 2 768 0 1 413 genus Methylococcus 7 0 1 761 species 414 Methylococcus capsulatus 1 416 genus 5 3655 0 63 Methylomonas species 1538553 0 739 1 Methylomonas denitrificans 1 1159 0 2608980 no rank species 1727196 1159 1 0 Methylomonas sp. DH-1 Methylomonas methanica 913 1 0 421 species Methylomonas koyamae 1 781 0 species 702114 1 135625 order 30 12398 0 13 Pasteurellales Pasteurellaceae 1352 0 12385 29 family 712 1 Pasteurella 1 3 825 0 1 745 genus Pasteurella multocida 0 1 516 species 747 0 1 308 species 754 Pasteurella dagmatis Haemophilus 7 0 2481 6 724 1 genus 0 1 215 730 species [Haemophilus] ducreyi Haemophilus influenzae 1 874 0 727 species Haemophilus parainfluenzae 1 852 0 species 729 0 338 1 species 249188 Haemophilus pittmaniae 0 1 195 no rank 2609962 712310 species 195 1 0 Haemophilus sp. oral taxon 036 1 697331 genus 391 2 0 7 Basfia 0 384 1 157673 species [Mannheimia] succiniciproducens 1362 4 0 1 75984 genus Mannheimia 5 Mannheimia haemolytica species 75985 0 1 474 0 1 510 species 85404 Mannheimia varigena 1 373 0 no rank 2645054 Mannheimia sp. USDA-ARS-USMARC-1261 species 1432056 373 1 0 Glaesserella 7 0 397 2 2094023 1 genus Glaesserella parasuis 738 species 1 390 0 3 Bibersteinia genus 1 476528 2 1855 0 Bibersteinia trehalosi 1852 1 0 47735 species 4 1637 0 713 genus species 718 314 1 0 Actinobacillus equuli Actinobacillus suis 0 1 280 species 716 Actinobacillus succinogenes species 67854 0 504 1 Actinobacillus pleuropneumoniae 715 species 539 1 0 genus 1 416916 3 1131 0 81 Aggregatibacter 0 562 1 species 732 Aggregatibacter aphrophilus Aggregatibacter actinomycetemcomitans 714 species 0 1 488 214906 genus 0 516 1 Histophilus somni 516 1 0 species 731 155493 genus 0 1 438 0 438 1 750 species Gallibacterium anatis 250 Oceanospirillales 135619 1 order 0 69 24994 Oceanospirillaceae 29 0 12 2923 family 135620 1 Thalassolituus 3 379 2 0 genus 1 187492 Thalassolituus oleivorans 187493 species 376 1 0 0 825 4 28253 1 genus Marinomonas 3 Marinomonas posidonica species 936476 0 1 235 1 379 0 no rank 196814 species 400668 379 1 0 Marinomonas sp. MWYL1 1 208 0 species 119864 Marinomonas mediterranea 2 214 0 1 188907 genus Oleispira 2 Oleispira antarctica 188908 species 212 1 0 1 505 0 genus 1537406 1 505 0 species 1249553 Bacterioplanes sanyensis genus 48075 1 0 971 2 5 Marinobacterium species 1821621 1 966 0 Marinobacterium aestuarii Halomonadaceae 272 0 30 15556 28256 1 family Kushneria 28 0 1725 3 504090 1 genus Kushneria marisflavi 0 1 821 species 157779 0 876 1 species 698828 Kushneria konosiri 10 Cobetia genus 204286 1 0 2 803 Cobetia marina 793 1 0 species 28258 Halotalea 30 2 793 0 genus 1 376488 Halotalea alkalilenta 0 763 1 376489 species 1 42054 genus 2 889 0 1 Chromohalobacter 0 888 1 158080 species Chromohalobacter salexigens 237 Halomonas genus 2745 1 0 10093 15 no rank 2609666 0 8 4958 species 2136172 837 1 0 Halomonas sp. SF2003 species 1610576 0 725 1 Halomonas sp. R57-5 1 284 0 species 1971364 Halomonas sp. GT Halomonas sp. 'Soap Lake #7' species 1962264 1 541 0 species 1883416 1 1238 0 Halomonas sp. 1513 species 1949203 0 541 1 Halomonas sp. 'Soap Lake #6' Halomonas sp. KO116 0 521 1 species 1504981 Halomonas sp. GFAJ-1 0 271 1 1118153 species 1897729 species 0 1019 1 Halomonas aestuarii Halomonas campaniensis 0 1 246 213554 species Halomonas chromatireducens 0 963 1 species 507626 115561 species 1 878 0 Halomonas hydrothermalis Halomonas huangheensis 1178482 species 1 596 0 species 475662 0 1196 1 Halomonas beimenensis Salinicola 9 0 897 2 genus 404432 1 0 1 888 species 1771309 Salinicola tamaricis no rank 114403 84 3 0 genus 1495768 0 26 1 Candidatus Evansia muelleri 1 26 0 1495769 species 235572 genus 0 42 1 Candidatus Portiera aleyrodidarum 91844 species 42 1 0 genus 114185 0 1 16 Candidatus Carsonella ruddii 0 1 16 114186 species 64 Alcanivoracaceae 1 224372 family 9 3767 0 0 6 3211 genus 59753 1 Alcanivorax 70 Alcanivorax borkumensis 273 1 0 species 59754 Alcanivorax xenomutans 0 1 780 1094342 species no rank 2638842 0 278 1 1113728 species 0 1 278 Alcanivorax sp. NBRC 101098 0 1 904 species 285091 Alcanivorax dieselolei species 1306787 906 1 0 Alcanivorax pacificus 2025617 1 genus 0 492 2 2 Ketobacter Ketobacter alkanivorans species 1917421 0 1 490 1920240 1 family 0 785 6 2 Kangiellaceae 783 5 0 1 261963 genus Kangiella 6 161 1 0 species 261964 Kangiella koreensis species 1144748 207 1 0 Kangiella sediminilitoris species 914150 1 119 0 Kangiella geojedonensis Kangiella profundi 290 1 0 1561924 species 0 827 5 255527 1 family Saccharospirillaceae 16 Reinekea 3 0 287 2 genus 230494 1 1 284 0 1336806 species Reinekea forsetii 1 1445504 genus 2 524 0 13 Gynuella Gynuella sunshinyii 1445505 species 0 1 511 Oleiphilaceae 2 3 183 0 1 191033 family genus 141450 1 0 181 2 2 Oleiphilus 1 179 0 species 141451 Oleiphilus messinensis family 1 224379 3 703 0 8 Hahellaceae Hahella 3 0 2 695 genus 158481 1 0 1 692 species 158327 Hahella chejuensis 560 Xanthomonadales order 1 135614 48194 53 0 Xanthomonadaceae 489 0 38 38838 32033 1 family Pseudoxanthomonas 39 3 3013 0 genus 1 83618 Pseudoxanthomonas spadix species 415229 0 1 770 314722 species 2204 1 0 Pseudoxanthomonas suwonensis 0 1 400 genus 2370 2371 species 1 400 0 Xylella fastidiosa Lysobacter 75 0 5 4684 68 1 genus 84531 species 0 1205 1 Lysobacter antibioticus 69 species 0 1117 1 Lysobacter enzymogenes Lysobacter gummosus 262324 species 985 1 0 435897 species 0 1 1302 Lysobacter capsici genus 83614 1 0 626 2 11 Luteimonas Luteimonas sp. 100111 2006110 species 1 615 0 344 Stenotrophomonas genus 40323 1 0 9 12703 species 83617 0 633 1 Stenotrophomonas nitritireducens 0 4 3062 no rank 196198 species 1793721 0 666 1 Stenotrophomonas sp. KCTC 12332 0 610 1 1827305 species Stenotrophomonas sp. MYb57 Stenotrophomonas sp. LM091 species 1904944 0 1 920 Stenotrophomonas sp. WZN-1 866 1 0 species 2005046 species group 995085 1 6074 0 Stenotrophomonas maltophilia 0 1 6074 40324 species 1 818 0 species 216778 Stenotrophomonas rhizophila Stenotrophomonas acidaminiphila 0 1 1772 128780 species Xanthomonas 1115 0 17 16923 338 1 genus 0 631 1 species 366650 Xanthomonas alfalfae 1985254 species 1 695 0 Xanthomonas phaseoli Xanthomonas vesicatoria 1 638 0 56460 species Xanthomonas albilineans 0 542 1 species 29447 Xanthomonas perforans species 442694 1 934 0 347 species 1199 1 0 Xanthomonas oryzae 428 1 0 species 48664 Xanthomonas fragariae Xanthomonas campestris 339 species 2472 1 0 Xanthomonas hortorum species 56454 0 1 964 Xanthomonas sacchari species 56458 1 1011 0 53413 species 523 1 0 Xanthomonas axonopodis Xanthomonas vasicola 576 1 0 species 56459 Xanthomonas translucens 1 1415 0 species 343 species group 643453 2 3121 0 Xanthomonas fuscans 0 1 901 species 366648 Xanthomonas citri 346 species 0 1 2220 Xanthomonas euvesicatoria 456327 species 0 659 1 103 Rhodanobacteraceae 1775411 1 family 0 14 8796 242605 1 genus 0 639 2 14 Luteibacter Luteibacter rhizovicinus 242606 species 0 625 1 75309 1 genus 0 2 1396 31 Rhodanobacter Rhodanobacter denitrificans 666685 species 0 1 1365 4 4167 0 genus 1 231454 Dyella 70 Dyella jiangningensis 0 1287 1 species 1379159 Dyella japonica 231455 species 0 1 1642 Dyella thiooxydans 0 1 1168 445710 species Dokdonella 18 1040 2 0 genus 1 323413 1022 1 0 323415 species Dokdonella koreensis Frateuria 8 967 2 0 1 70411 genus Frateuria aurantia 81475 species 1 959 0 0 484 1 genus 2233801 1 484 0 species 2021234 Xanthomonadales bacterium D13 order 1 1240482 6 562 0 2 Orbales Orbaceae 2 560 5 0 1 1240483 family 266 2 0 genus 1 1193503 Gilliamella 3 0 263 1 species 1196095 Gilliamella apicola 5 Frischella genus 1335631 1 0 292 2 Frischella perrara 1267021 species 0 1 287 118884 no rank 0 3295 12 1524249 genus 733 1 0 Pseudohongiella spirulinae species 1249552 1 733 0 3 Thiolapillus 1 1608298 genus 2 726 0 species 1076588 0 1 723 Thiolapillus brandeum 1 215 0 clade 198346 Candidatus Baumannia cicadellinicola species 186490 215 1 0 1 Candidatus Thioglobus 655184 1 genus 0 248 3 Candidatus Thioglobus singularis 1 68 0 1427364 species species 1705394 0 1 179 Candidatus Thioglobus autotrophicus 1 349742 genus 915 2 0 2 Sedimenticola Sedimenticola thiotaurini 0 913 1 species 1543721 3 458 0 32036 clade 0 119 1 genus 1541743 Candidatus Ruthia magnifica 0 1 119 386487 species 113267 species 1 210 0 Bathymodiolus septemdierum thioautotrophic gill symbiont Calyptogena okutanii thioautotrophic gill symbiont species 410330 0 129 1 542 Pseudomonadales order 1 72274 135777 129 0 Pseudomonadaceae 1160 121371 86 0 1 135621 family 351 subfamily 3167 3 0 Azotobacter 49 0 3 3167 352 1 genus 1236 1 0 354 species Azotobacter vinelandii 353 species 1 1882 0 Azotobacter chroococcum 1 1849530 genus 264 2 0 1 Oblitimonas Oblitimonas alkaliphila 263 1 0 species 1697053 1 286 genus 80 116780 0 4755 Pseudomonas 237609 species 0 1 621 Pseudomonas alkylphenolica Pseudomonas psychrotolerans 0 1211 1 species 237610 136845 species group 6 16726 0 Pseudomonas oryzihabitans 0 1 1014 species 47885 Pseudomonas putida 9648 1 0 species 303 76759 species 1 2133 0 Pseudomonas monteilii Pseudomonas fulva 1258 1 0 47880 species species 78327 2010 1 0 Pseudomonas mosselii Pseudomonas plecoglossicida species 70775 0 663 1 157783 species 0 1 649 Pseudomonas cremoricolorata Pseudomonas frederiksbergensis 1 1522 0 104087 species Pseudomonas antarctica species 219572 0 990 1 11259 8 0 136849 species group 1 1337 0 species 251701 Pseudomonas syringae group genomosp. 3 741 1 0 species 33069 Pseudomonas viridiflava Pseudomonas avellanae 46257 species 1 836 0 550 1 0 2775504 no rank 550 1 0 1206777 species Pseudomonas sp. Lz4W species subgroup 251698 0 2 1997 1 915 0 species 29438 Pseudomonas savastanoi species 47877 1 1082 0 Pseudomonas amygdali Pseudomonas cichorii species 36746 0 1 908 0 4890 1 251695 species subgroup Pseudomonas syringae species 317 0 4890 1 0 14953 9 species group 136843 species 200450 0 1 1018 Pseudomonas trivialis 1 1469 0 species 47878 Pseudomonas azotoformans Pseudomonas fluorescens 294 species 1 8453 0 Pseudomonas mandelii 0 679 1 species 75612 200451 species 1 573 0 Pseudomonas poae Pseudomonas veronii 76761 species 1 499 0 0 1 557 47879 species Pseudomonas corrugata Pseudomonas orientalis 0 654 1 species 76758 1051 1 0 species 380021 Pseudomonas protegens 1 1207 0 species 157782 Pseudomonas parafulva 0 6693 2 136846 species group Pseudomonas balearica 74829 species 0 1 1038 0 1 5655 species subgroup 578833 Pseudomonas stutzeri 316 species 1 5655 0 Pseudomonas koreensis 0 1 1075 198620 species species 312306 0 1 684 Pseudomonas entomophila 25890 30 0 no rank 196821 Pseudomonas sp. FGI182 0 915 1 species 1259844 species 1636610 0 1 689 Pseudomonas sp. PONIH3 Pseudomonas sp. S-6-2 1 834 0 species 1931241 Pseudomonas sp. St29 species 1500687 0 1 1088 Pseudomonas sp. TKP 1415630 species 0 754 1 0 1 683 species 2067572 Pseudomonas sp. NC02 species 1207075 0 590 1 Pseudomonas sp. UW4 0 603 1 1981174 species Pseudomonas sp. M30-35 597 1 0 species 1659194 Pseudomonas sp. GR 6-02 Pseudomonas sp. CC6-YY-74 1930532 species 0 549 1 0 1 1157 species 1856685 Pseudomonas sp. TCU-HL1 Pseudomonas sp. MYb193 1827300 species 0 647 1 2083054 species 0 1 577 Pseudomonas sp. LG1D9 Pseudomonas sp. SWI36 species 2083052 0 1 927 1232 1 0 1294143 species Pseudomonas sp. ATCC 13867 1142 1 0 1500686 species Pseudomonas sp. Os17 2018067 species 598 1 0 Pseudomonas sp. FDAARGOS_380 species 1611770 820 1 0 Pseudomonas sp. MRSN12121 623 1 0 species 2083055 Pseudomonas sp. LH1G9 Pseudomonas sp. DR 5-09 0 1 1021 1534110 species 0 1 804 species 2083053 Pseudomonas sp. SWI44 species 2069256 1 940 0 Pseudomonas sp. XWY-1 Pseudomonas sp. SWI6 0 692 1 species 2083051 Pseudomonas sp. JY-Q 0 751 1 1338689 species Pseudomonas sp. CCOS 191 0 1 1013 1649877 species 0 2078 1 species 69328 Pseudomonas sp. VLB120 Pseudomonas sp. URMO17WK12:I11 1283291 species 0 1 1038 1898684 species 0 1 920 Pseudomonas sp. LPH1 Pseudomonas sp. StFLB209 0 1 1144 species 1028989 464 1 0 species 2049589 Pseudomonas sp. HLS-6 Pseudomonas knackmussii 65741 species 0 1178 1 0 5678 2 species group 136842 0 3966 1 species 587753 Pseudomonas chlororaphis Pseudomonas fragi 0 1 1712 296 species Pseudomonas cerasi 0 823 1 1583341 species 0 15345 6 136841 species group species subgroup 1232139 1331 1 0 Pseudomonas furukawaii species 1149133 0 1 1331 Pseudomonas citronellolis species 53408 2390 1 0 Pseudomonas resinovorans 1293 1 0 species 53412 Pseudomonas mendocina 0 1 4121 species 300 species 43263 1 1094 0 Pseudomonas alcaligenes Pseudomonas aeruginosa 0 1 5116 species 287 species 1788301 0 1 525 Pseudomonas versuta Pseudomonas alcaliphila species 101564 1 1153 0 Pseudomonas lurida 0 894 1 244566 species Pseudomonas brassicacearum 1 1775 0 930166 species 0 1 589 species 216142 Pseudomonas rhizosphaerae Pseudomonas silesiensis species 1853130 585 1 0 Moraxellaceae 44 13864 42 0 family 1 468 25 10392 0 genus 1 469 Acinetobacter 115 Acinetobacter haemolyticus 1 368 0 29430 species 0 382 1 108981 species Acinetobacter schindleri Acinetobacter johnsonii 0 250 1 40214 species Acinetobacter soli 0 1 219 species 487316 909768 species group 0 5 4644 Acinetobacter lactucae 0 1 208 1785128 species species 48296 0 1 668 Acinetobacter pittii Acinetobacter calcoaceticus species 471 0 1 662 0 1 273 species 106654 Acinetobacter nosocomialis Acinetobacter baumannii species 470 0 1 2833 1 175 0 species 202950 0 175 1 62977 strain Acinetobacter sp. ADP1 species 40216 0 1 264 Acinetobacter radioresistens 196816 no rank 7 1913 0 Acinetobacter sp. ACNIH2 species 1758189 186 1 0 2079596 species 229 1 0 Acinetobacter sp. SWBY1 species 1808001 0 300 1 Acinetobacter sp. LoGeW2-3 Acinetobacter sp. TGL-Y2 1407071 species 358 1 0 Acinetobacter sp. NCu2D-2 0 1 349 species 1608473 Acinetobacter sp. TTH0-4 1646498 species 0 1 192 Acinetobacter sp. ACNIH1 1636603 species 0 1 299 0 1 352 40215 species Acinetobacter junii species 1324350 0 1 517 Acinetobacter equi species 106648 0 1 364 Acinetobacter bereziniae 1 345 0 1148157 species Acinetobacter oleivorans species 1789224 280 1 0 Acinetobacter larvae Acinetobacter indicus 756892 species 0 204 1 0 5 1396 475 1 genus Moraxella 8 Moraxella bovoculi 386891 species 366 1 0 29433 species 1 215 0 Moraxella ovis Moraxella catarrhalis 480 species 1 106 0 0 701 1 species 34062 Moraxella osloensis Psychrobacter 18 0 11 2032 genus 497 1 no rank 196806 970 6 0 231 1 0 1720344 species Psychrobacter sp. AntiMn-1 Psychrobacter sp. G 1 89 0 species 571800 Psychrobacter sp. PRwf-1 230 1 0 349106 species Psychrobacter sp. P2G3 0 1 152 1699622 species Psychrobacter sp. DAB_AL43B species 1028416 0 139 1 Psychrobacter sp. P11G5 1699624 species 129 1 0 Psychrobacter alimentarius 0 1 284 species 261164 Psychrobacter urativorans 45610 species 0 1 183 Psychrobacter arcticus 449 1 0 species 334543 1 128 0 330922 species Psychrobacter cryohalolentis 1 135622 order 103 31163 0 203 Alteromonadales 0 6272 25 family 267888 1 Pseudoalteromonadaceae 83 136 Pseudoalteromonas 53246 1 genus 0 6189 24 species 176102 0 1 185 Pseudoalteromonas agarivorans Pseudoalteromonas tetraodonis 0 331 1 species 43659 Pseudoalteromonas issachenkonii 0 1 211 species 152297 Pseudoalteromonas piratica 1348114 species 0 1 242 Pseudoalteromonas translucida species 166935 1 306 0 Pseudoalteromonas espejiana 414 1 0 species 28107 288 species 1 595 0 Pseudoalteromonas atlantica Pseudoalteromonas arctica 394751 species 1 146 0 Pseudoalteromonas spongiae 298657 species 0 542 1 Pseudoalteromonas phenolica 161398 species 1 169 0 no rank 194690 0 1092 5 species 1514074 1 177 0 Pseudoalteromonas sp. NC201 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 species 1 186 0 0 1 315 283699 species Pseudoalteromonas sp. Bsw20308 208 1 0 234831 species Pseudoalteromonas sp. SM9913 1 206 0 1761891 species Pseudoalteromonas sp. 13-15 Pseudoalteromonas rubra 0 184 1 43658 species 0 1 343 species 43662 Pseudoalteromonas piscicida species 267375 1 92 0 Pseudoalteromonas marina Pseudoalteromonas luteoviolacea species 43657 110 1 0 species 314281 198 1 0 Pseudoalteromonas tunicata Pseudoalteromonas haloplanktis 0 281 1 species 228 Pseudoalteromonas aliena 1 257 0 species 247523 species 28109 355 1 0 Pseudoalteromonas nigrifaciens 6 Idiomarinaceae family 1 267893 868 6 0 0 5 862 135575 1 genus Idiomarina 14 Idiomarina loihiensis 245 1 0 135577 species 2 459 0 no rank 2614829 Idiomarina sp. X4 2055892 species 1 266 0 species 2100422 1 193 0 Idiomarina sp. OT37-5b 0 1 144 1096243 species Idiomarina piscisalsi 0 909 3 267892 1 family Ferrimonadaceae 6 20 Ferrimonas 44011 1 genus 0 2 903 0 1 883 species 44012 Ferrimonas balearica 1 267891 family 170 3 0 1 Moritellaceae 3 Moritella genus 58050 1 0 169 2 Moritella viscosa 1 166 0 species 80854 0 2128 9 267889 1 family Colwelliaceae 9 genus 1518149 1 0 297 2 5 Thalassotalea 0 292 1 species 1763536 Thalassotalea crassostreae Colwellia 13 1822 6 0 1 28228 genus 28229 species 1 351 0 Colwellia psychrerythraea 0 1045 3 196834 no rank Colwellia sp. PAMC 21821 1816219 species 0 315 1 Colwellia sp. MT41 323 1 0 species 58049 species 1816218 1 407 0 Colwellia sp. PAMC 20917 Colwellia beringensis species 1967665 0 1 413 Alteromonadaceae 76 0 29 11532 72275 1 family 126 Marinobacter 2742 1 genus 0 5754 10 0 1 287 330734 species Marinobacter psychrophilus 3 1854 0 83889 no rank Marinobacter sp. CP1 0 1 497 species 1671721 Marinobacter sp. LQ44 1749259 species 951 1 0 0 406 1 species 490759 Marinobacter sp. BSs20148 369 1 0 1033846 species Marinobacter adhaerens species 1420917 0 771 1 Marinobacter salarius 0 454 1 1874317 species Marinobacter salinus Marinobacter hydrocarbonoclasticus 2743 species 1 1402 0 species 1420916 491 1 0 Marinobacter similis Lacimicrobium 17 962 2 0 genus 1 1751872 945 1 0 1526571 species Lacimicrobium alkaliphilum 1621534 1 genus 0 453 2 5 Paraglaciecola Paraglaciecola psychrophila 0 1 448 326544 species Agarivorans 49 2 505 0 genus 1 261825 1 456 0 species 680279 Agarivorans gilvus 633 2 0 89404 genus 0 1 317 no rank 2618684 983545 species 1 317 0 Glaciecola sp. 4H-3-7+YE-5 1 316 0 species 300231 Glaciecola nitratireducens Alteromonas 18 0 3149 10 226 1 genus Alteromonas stellipolaris 1 587 0 233316 species Alteromonas australica species 589873 0 227 1 Alteromonas naphthalenivorans species 715451 0 1 146 species 287094 417 1 0 Alteromonas addita Alteromonas macleodii 0 634 1 species 28108 0 1 370 314275 species Alteromonas mediterranea no rank 2614992 0 3 750 0 1 190 2058133 species Alteromonas sp. MB-3u-76 species 1777491 0 413 1 Alteromonas sp. Mac1 Alteromonas sp. RW2A1 1917158 species 0 1 147 267894 family 2 548 0 67572 genus 0 2 548 0 190 1 no rank 2614957 190 1 0 314282 species Psychromonas sp. CNPT3 Psychromonas ingrahamii species 357794 1 358 0 72 Shewanellaceae family 1 267890 25 8533 0 109 Shewanella genus 1 22 8461 24 0 Shewanella loihica 359303 species 0 1 692 species 62322 0 1 1076 Shewanella baltica 582 1 0 60217 species Shewanella violacea 335 1 0 species 24 Shewanella putrefaciens 60478 species 0 758 1 Shewanella amazonensis 245 1 0 271097 species Shewanella sediminis species 192073 199 1 0 Shewanella denitrificans Shewanella psychrophila 225848 species 0 1 279 60961 species 171 1 0 Shewanella woodyi no rank 196818 1742 6 0 2059264 species 1 361 0 Shewanella sp. Pdp11 Shewanella sp. W3-18-1 species 351745 0 259 1 Shewanella sp. MR-4 1 279 0 species 60480 species 2029986 0 391 1 Shewanella sp. WE21 1 255 0 94122 species Shewanella sp. ANA-3 0 197 1 60481 species Shewanella sp. MR-7 species 404011 280 1 0 Shewanella piezotolerans species 260364 0 409 1 Shewanella marisflavi species 56812 0 195 1 Shewanella frigidimarina Shewanella japonica 0 183 1 species 93973 549 1 0 70863 species Shewanella oneidensis 0 1 278 species 2018305 Shewanella bicestrii Shewanella pealeana species 70864 0 201 1 species 271098 1 178 0 Shewanella halifaxensis Enterobacterales 999 410646 242 0 1 91347 order 27 16693 0 family 1 1903409 Erwiniaceae 66 genus 51228 1 103 0 Wigglesworthia glossinidia 0 1 103 51229 species 5 Buchnera genus 1 32199 773 2 0 Buchnera aphidicola species 9 1 768 0 0 8 4683 genus 551 1 Erwinia 142 0 1 1201 species 182337 Erwinia billingiae 552 species 0 1 395 Erwinia amylovora 2622719 no rank 0 405 1 Erwinia sp. Ejp617 405 1 0 215689 species Erwinia pyrifoliae species 79967 0 1 560 1045 1 0 1619313 species Erwinia gerundensis Candidatus Erwinia sp. ErCipseudotaxifoliae 0 65 1 1922217 species 338565 species 0 870 1 Erwinia tasmaniensis 2 1875 0 2100764 genus 665913 species 0 1037 1 Pantoea calida species 665914 838 1 0 Pantoea gaviniae genus 82986 1 0 445 2 28 Tatumella Tatumella citrea 53336 species 417 1 0 53335 1 genus 0 11 8748 351 Pantoea 468 1 0 species 1891675 Pantoea alhagi 2630326 no rank 0 2807 3 0 1 698 1484158 species Pantoea sp. PSNIH1 Pantoea sp. PSNIH2 1011 1 0 species 1484157 species 592316 1 1098 0 Pantoea sp. At-9b species 66269 1 895 0 Pantoea stewartii 1654067 species group 1156 1 0 0 1156 1 species 549 Pantoea agglomerans Pantoea ananatis 0 1 622 553 species species 470934 0 1 1756 Pantoea vagans Pantoea rwandensis species 1076550 537 1 0 Candidatus Pantoea carbekii 1 156 0 species 1235990 0 2 357 family 1903416 genus 1 82984 357 2 0 11 Pragia Pragia fontium 0 1 346 species 82985 family 1 1903414 7636 21 0 20 Morganellaceae 0 89 1 637 genus Arsenophonus symbiont of Lipoptena fortisetosa 0 89 1 species 634113 0 4 1547 586 1 genus Providencia 83 Providencia stuartii 0 756 1 588 species Providencia alcalifaciens 0 298 1 126385 species Providencia rettgeri species 587 0 410 1 genus 581 1 0 2 1373 17 Morganella 0 1356 1 582 species Morganella morganii 0 4 1304 genus 29487 1 Photorhabdus 9 Photorhabdus temperata 0 338 1 species 574560 Photorhabdus luminescens 0 1 362 species 29488 Photorhabdus asymbiotica 291112 species 595 1 0 1 626 genus 2158 6 0 4 Xenorhabdus species 40577 0 1 333 Xenorhabdus poinarii Xenorhabdus doucetiae 351671 species 0 1 446 351679 species 0 1 259 Xenorhabdus hominickii Xenorhabdus bovienii 641 1 0 species 40576 species 628 0 475 1 Xenorhabdus nematophila 53 Proteus 583 1 genus 0 1145 3 Proteus mirabilis species 584 1 782 0 0 310 1 585 species Proteus vulgaris family 1903412 1 0 9438 14 26 Hafniaceae genus 1 568 3 1655 0 28 Hafnia 2621980 no rank 457 1 0 Hafnia sp. CBA7124 1 457 0 1848580 species Hafnia alvei 1 1170 0 569 species 2 1806 0 genus 1 82982 Obesumbacterium 706 0 1 1100 species 82983 Obesumbacterium proteus 428 Edwardsiella genus 1 635 5951 8 0 Edwardsiella hoshinae species 93378 1 760 0 no rank 2676541 1399 2 0 Edwardsiella sp. EA181011 0 818 1 1578828 species 1 581 0 1650654 species Edwardsiella sp. LADL05-105 587 1 0 1821960 species Edwardsiella anguillarum 1 1374 0 species 636 Edwardsiella tarda Edwardsiella piscicida 0 1 773 1263550 species 1 630 0 species 67780 Edwardsiella ictaluri 2820 Enterobacteriaceae 543 1 family 0 325478 116 8 Cedecea genus 1 158483 2 2459 0 Cedecea neteri species 158822 0 1 2451 2383 Klebsiella 570 1 genus 0 10 36723 1463165 species 1 1633 0 Klebsiella quasipneumoniae Klebsiella oxytoca 571 species 0 1 7348 2442 2 0 no rank 2608929 Klebsiella sp. M5al 1934254 species 1369 1 0 Klebsiella sp. LTGPAF-6F 1905288 species 1073 1 0 species 244366 1 3021 0 Klebsiella variicola 573 species 13716 1 0 Klebsiella pneumoniae Klebsiella michiganensis 1134687 species 3379 1 0 Klebsiella aerogenes 548 species 1603 1 0 species 2026240 1 1198 0 Klebsiella quasivariicola 1 67 0 409304 genus 1 67 0 species 168169 Candidatus Ishikawaella capsulata 36866 no rank 0 4070 5 Enterobacteriaceae bacterium strain FGI 57 693444 species 935 1 0 0 838 1 891974 species Plautia stali symbiont 0 743 1 species 1920128 Enterobacteriaceae bacterium ENNIH3 Enterobacteriaceae bacterium ENNIH1 2066051 species 0 1 833 Enterobacteriaceae bacterium ENNIH2 1920109 species 0 1 721 Lelliottia 30 2851 4 0 genus 1 1330545 Lelliottia amnigena 61646 species 0 1383 1 Lelliottia jeotgali 1907578 species 502 1 0 Lelliottia nimipressuralis 1 936 0 species 69220 45 Salmonella 590 1 genus 0 3 22872 28901 species 0 1 21994 Salmonella enterica Salmonella bongori 54736 species 833 1 0 301 Cronobacter 1 413496 genus 8316 8 0 Cronobacter sakazakii 28141 species 1 2058 0 413497 species 0 1 794 Cronobacter dublinensis 0 618 1 species 413502 Cronobacter turicensis 1148 1 0 413501 species Cronobacter muytjensii Cronobacter condimenti 1163710 species 892 1 0 535744 species 0 651 1 Cronobacter universalis Cronobacter malonaticus 413503 species 0 1854 1 Shigella 1431 0 4 20831 620 1 genus 1 7942 0 2629414 no rank Shigella sp. PAMC 28760 1813821 species 0 7942 1 622 species 0 6573 1 Shigella dysenteriae Shigella flexneri 0 1 4885 species 623 Pluralibacter 11 0 3300 3 genus 1330546 1 1284 1 0 species 1334193 [Enterobacter] lignolyticus species 61647 2005 1 0 Pluralibacter gergoviae Escherichia 927 5 94074 0 1 561 genus 3614 1 0 species 564 Escherichia fergusonii Escherichia albertii 208962 species 1 3455 0 Escherichia coli 0 1 84115 species 562 Escherichia marmotae 1499973 species 1 1963 0 genus 1048757 0 34 1 species 1048758 0 1 34 Candidatus Moranella endobia genus 1 160674 5481 3 0 177 Raoultella 575 species 1367 1 0 Raoultella planticola Raoultella ornithinolytica 1 3937 0 species 54291 0 2258 4 genus 83654 1 Leclercia 85 Leclercia adecarboxylata 0 1 549 species 83655 no rank 2627398 0 2 1624 Leclercia sp. LSNIH1 species 1920114 1019 1 0 Leclercia sp. LSNIH3 0 1 605 species 1920116 Kosakonia 40 0 3969 5 genus 1330547 1 Kosakonia oryzae 0 1 679 species 497725 Kosakonia radicincitans 0 1324 1 species 283686 species 208223 1 1049 0 Kosakonia cowanii Kosakonia sacchari 0 877 1 species 1158459 genus 401618 1 168 0 Candidatus Riesia pediculicola 0 1 168 species 401619 1 547 genus 22 46073 0 3049 Enterobacter 0 12 35666 354276 species group species 1812935 0 1198 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 69218 species 0 1 619 Enterobacter cancerogenus species 299767 2429 1 0 Enterobacter ludwigii Enterobacter cloacae species 550 0 14679 1 3622 1 0 61645 species Enterobacter asburiae 0 5892 3 no rank 2757714 1915310 species 0 1 1888 Enterobacter cloacae complex sp. ECNIH7 Enterobacter cloacae complex bacterium 2027919 species 0 1508 1 1 2496 0 2077137 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 Enterobacter hormaechei 3454 0 3 5123 species 158836 1 subspecies 1812934 1 1184 0 Enterobacter cloacae complex 'Hoffmann cluster III' 0 485 1 subspecies 1296536 Enterobacter xiangfangensis species 208224 0 1 2104 Enterobacter kobei 9 7358 0 2608935 no rank Enterobacter sp. E20 1 614 0 1560339 species Enterobacter sp. Crenshaw 1977566 species 0 1 510 Enterobacter sp. HK169 0 726 1 species 1868135 843 1 0 1914861 species Enterobacter sp. SA187 399742 species 491 1 0 Enterobacter sp. 638 Enterobacter sp. CRENT-193 1 855 0 species 2051905 Enterobacter sp. FY-07 1 728 0 species 1692238 Enterobacter sp. R4-368 0 867 1 1166130 species Enterobacter sp. ODB01 species 1827481 0 1724 1 1021 1 0 579 genus 61648 species 1021 1 0 Kluyvera intermedia genus 1335483 0 563 1 563 1 0 563 species Shimwellia blattae 544 1 genus 0 66088 14 4382 Citrobacter Citrobacter amalonaticus 1 3123 0 species 35703 4953 2 0 no rank 2644389 Citrobacter sp. CFNIH10 0 1848 1 species 1920110 Citrobacter sp. FDAARGOS_156 0 3105 1 species 1702170 Citrobacter koseri 545 species 1 3808 0 0 48237 7 1344959 species group Citrobacter werkmanii species 67827 0 1845 1 Citrobacter freundii complex sp. CFNIH3 0 3211 1 species 2077147 0 1 26259 species 546 Citrobacter freundii species 2077148 0 8419 1 Citrobacter freundii complex sp. CFNIH4 57706 species 0 1 2218 Citrobacter braakii Citrobacter freundii complex sp. CFNIH9 2077149 species 1 5621 0 Citrobacter freundii complex sp. CFNIH2 0 664 1 2066049 species species 67824 0 757 1 Citrobacter farmeri 1 828 0 67825 species Citrobacter rodentium 0 1440 18 191675 no rank clade 84563 0 18 1440 1906660 genus 0 62 1 Candidatus Mikella endobia 62 1 0 species 1778264 1906659 1 genus 0 57 2 2 Candidatus Hoaglandella Candidatus Hoaglandella endobia 0 55 1 species 1778263 104 1 0 genus 1682492 Candidatus Tachikawaea gelatinosa species 1410383 104 1 0 146507 clade 266 3 0 secondary endosymbiont of Ctenarytaina eucalypti 1199245 species 0 1 75 secondary endosymbiont of Heteropsylla cubana 0 1 54 species 134287 137 1 0 genus 568987 species 138072 1 137 0 Candidatus Hamiltonella defensa Candidatus Doolittlea 3 0 347 2 genus 1906657 1 Candidatus Doolittlea endobia species 1778262 344 1 0 0 1 205 1906661 genus 1070130 species 205 1 0 Candidatus Gullanella endobia 199891 clade 87 1 0 0 87 1 1835721 species secondary endosymbiont of Trabutina mannipara clade 84564 312 7 0 genus 1 203804 312 7 0 1 Candidatus Blochmannia Candidatus Blochmannia floridanus 0 108 1 species 203907 0 1 53 species 251535 Candidatus Blochmannia vafer Candidatus Blochmannia pennsylvanicus 46 1 0 species 101534 251542 species 21 1 0 Candidatus Blochmannia chromaiodes 711328 no rank 2 83 0 1505596 species 27 1 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 1505597 0 56 1 39 Pectobacteriaceae 1903410 1 family 0 15395 20 genus 1 84565 1603 5 0 23 Sodalis Sodalis glossinidius 63612 species 499 1 0 Sodalis praecaptivus species 1239307 628 1 0 Candidatus Sodalis pierantonius 1486991 species 0 1 415 Sodalis endosymbiont of Henestaris halophilus 38 1 0 species 1929246 Pectobacterium 131 6327 6 0 1 122277 genus Pectobacterium carotovorum 1 2980 0 species 554 Pectobacterium parmentieri 1 611 0 species 1905730 2042057 species 1 1296 0 Pectobacterium polaris 29471 species 0 1 721 Pectobacterium atrosepticum Pectobacterium wasabiae 0 1 588 55208 species Dickeya 207 0 6566 6 204037 1 genus 0 1 867 species 204038 Dickeya dadantii Dickeya zeae species 204042 0 1575 1 species 1089444 0 2102 1 Dickeya solani Dickeya fangzhongdai 1 1017 0 1778540 species Dickeya dianthicola 204039 species 0 1 798 24 Brenneria 71655 1 genus 0 860 2 Brenneria goodwinii 836 1 0 1109412 species 0 1099 2 no rank 451511 2 1099 0 1 702 genus Plesiomonas 27 Plesiomonas shigelloides species 703 0 1 1072 33551 39 0 1 1903411 family Yersiniaceae 126 Rouxiella genus 1565532 1 25 0 Chania 10 908 2 0 1 1745211 genus 898 1 0 species 1639108 Chania multitudinisentens Serratia 1070 21649 16 0 1 613 genus species 82996 0 1797 1 Serratia plymuthica 8 7623 0 2647522 no rank Serratia sp. SSNIH1 1758196 species 0 1 994 1 444 0 768490 species Serratia sp. AS12 Serratia sp. SCBI species 488142 0 907 1 Serratia sp. FS14 species 1327989 1085 1 0 Serratia sp. ATCC 39006 species 104623 1 891 0 Serratia sp. FGI94 671990 species 1 1143 0 Serratia sp. MYb239 2033438 species 1 1715 0 Serratia sp. AS13 0 444 1 768493 species 61651 species 1 1138 0 Serratia ficaria Serratia proteamaculans 28151 species 0 1 673 species 615 0 5238 1 Serratia marcescens Serratia fonticola 47917 species 1 1912 0 Serratia rubidaea species 61652 0 1 1210 614 species 0 1 988 Serratia liquefaciens 57 Rahnella 1 34037 genus 4 1903 0 0 1266 2 2635087 no rank 560 1 0 species 741091 Rahnella sp. Y9602 706 1 0 species 1805933 Rouxiella sp. ERMR1:05 Rahnella aquatilis 1 580 0 species 34038 10 Gibbsiella genus 1 929812 901 2 0 Gibbsiella quercinecans species 929813 1 891 0 889 Yersinia 1 629 genus 8039 13 0 437 1 0 species 28152 Yersinia kristensenii Yersinia frederiksenii 1305 1 0 species 29484 29483 species 0 428 1 Yersinia aldovae 29485 species 1 336 0 Yersinia rohdei no rank 2653513 0 1 266 Yersinia sp. FDAARGOS_228 0 1 266 1839800 species Yersinia aleksiciae species 263819 0 1 423 Yersinia ruckeri species 29486 607 1 0 species 631 1 276 0 Yersinia intermedia 1366 3 0 species group 1649845 367190 species 1 480 0 Yersinia similis 1 372 0 632 species Yersinia pestis Yersinia pseudotuberculosis 0 514 1 633 species species 630 0 1 1706 Yersinia enterocolitica 235 Chromatiales order 1 135613 19555 51 0 Chromatiaceae 102 7339 17 0 family 1 1046 85076 1 genus 0 1234 2 45 Marichromatium 37487 species 0 1 1189 Marichromatium purpuratum no rank 82569 0 1 855 1978339 species 0 855 1 Chromatiaceae bacterium 2141T.STBD.0c.01a Thiocystis 15 2 949 0 1 13724 genus 0 934 1 73141 species Thiocystis violascens genus 1980513 1 158 0 Candidatus Nitrosoglobus terrae species 1630141 0 158 1 Thiodictyon 18 2 1362 0 1 53392 genus species 1166950 1 1344 0 Candidatus Thiodictyon syntrophicum Allochromatium 34 1210 2 0 genus 1 85072 1 1176 0 species 1049 Allochromatium vinosum Nitrosococcus 1 0 837 4 genus 1227 1 317 1 0 species 473531 Nitrosococcus watsonii 0 1 273 species 1229 Nitrosococcus oceani species 133539 246 1 0 Nitrosococcus halophilus 632 2 0 genus 1 156885 Thioflavicoccus 11 Thioflavicoccus mobilis species 80679 0 621 1 15 Woeseiaceae family 1 1738654 309 3 0 0 2 294 1738655 1 genus Woeseia 4 Woeseia oceani 0 1 290 1548547 species 0 3 612 family 1676141 1 Wenzhouxiangellaceae 5 1676142 1 genus 0 2 607 16 Wenzhouxiangella Wenzhouxiangella marina 1579979 species 0 591 1 family 1 255526 4 782 0 12 Halothiobacillaceae 1 109262 genus 770 3 0 18 Halothiobacillus Halothiobacillus neapolitanus species 927 1 263 0 1 489 0 no rank 2636392 Halothiobacillus sp. LS2 1860122 species 0 489 1 3 602 0 family 1 449719 Granulosicoccaceae 2 0 600 2 437504 1 genus Granulosicoccus 2 Granulosicoccus antarcticus 0 598 1 437505 species Ectothiorhodospiraceae 124 8293 18 0 1 72276 family 2 Acidihalobacter 1765964 1 genus 0 2 627 160660 species 0 625 1 Acidihalobacter prosperus 31 Spiribacter genus 1 1335745 3 776 0 1335746 species 245 1 0 Spiribacter salinus 0 500 1 species 1335757 Spiribacter curvatus 1087 2 0 1 133193 genus Alkalilimnicola 23 Alkalilimnicola ehrlichii 351052 species 1 1064 0 1 106633 genus 6 3789 0 79 Thioalkalivibrio 2621013 no rank 0 452 1 species 396595 1 452 0 Thioalkalivibrio sp. K90mix Thioalkalivibrio versutus species 106634 614 1 0 Thioalkalivibrio sulfidiphilus 1 1694 0 species 1033854 1 400 0 186931 species Thioalkalivibrio nitratireducens Thioalkalivibrio paradoxus 550 1 0 108010 species 1 Halorhodospira genus 85108 1 0 2 840 Halorhodospira halophila 1053 species 0 1 839 16 Ectothiorhodospira 1051 1 genus 0 2 1050 2684909 no rank 0 1034 1 Ectothiorhodospira sp. BSL-9 0 1 1034 1442136 species 2 1383 0 no rank 451214 genus 1273155 1 0 2 1383 26 Thiohalobacter Thiohalobacter thiocyanaticus 1 1357 0 species 585455 Aeromonadales 169 28 31510 0 order 1 135624 233 Aeromonadaceae 84642 1 family 0 27 31341 genus 129577 1 0 2 1220 14 Oceanimonas 2636315 no rank 1206 1 0 Oceanimonas sp. GK1 0 1206 1 511062 species 0 737 2 225143 genus 0 1 400 species 1416627 Oceanisphaera profunda species 1903694 337 1 0 Oceanisphaera sp. AMac2203 41 Zobellella genus 1 347533 2 1875 0 Zobellella denitrificans 347534 species 1 1834 0 589 2 0 genus 1 43947 Tolumonas 8 Tolumonas auensis 43948 species 0 581 1 Aeromonas 1788 26687 18 0 1 642 genus 0 5650 1 species 644 Aeromonas hydrophila no rank 257493 8 7936 0 0 757 1 1636606 species Aeromonas sp. ASNIH1 Aeromonas sp. ASNIH3 species 1636608 953 1 0 Aeromonas sp. CU5 2033033 species 1125 1 0 1636609 species 1 1367 0 Aeromonas sp. ASNIH4 species 2033032 0 1 885 Aeromonas sp. CA23 Aeromonas sp. ASNIH2 species 1636607 0 1 967 Aeromonas sp. ASNIH7 species 1920107 1 883 0 Aeromonas sp. ASNIH5 species 1758179 999 1 0 Aeromonas veronii species 654 1 2809 0 Aeromonas salmonicida species 645 0 1 2055 Aeromonas media 1022 1 0 species 651 948519 species 0 1 1160 Aeromonas rivipollensis 1 973 0 558964 species Aeromonas aquatica Aeromonas schubertii 1256 1 0 652 species Aeromonas dhakensis 0 1 1224 species 196024 Aeromonas caviae species 648 1 814 0 0 8168 28 order 1706369 1 Cellvibrionales 43 Spongiibacteraceae 17 931 6 0 family 1 1706375 1 630749 genus 2 210 0 4 Spongiibacter 1 206 0 2631504 no rank species 1620392 206 1 0 Spongiibacter sp. IMCC21906 genus 1084558 392 1 0 716816 species 1 392 0 Oceanicoccus sagamiensis 8 Zhongshania 1434050 1 genus 0 312 2 Zhongshania aliphaticivorans 1 304 0 1470434 species Halieaceae 15 880 4 0 family 1 1706372 genus 1217416 1 0 865 3 17 Halioglobus Halioglobus pacificus species 930806 1 344 0 504 1 0 930805 species Halioglobus japonicus Microbulbiferaceae 29 1992 5 0 1 1706373 family 4 1963 0 1 48073 genus Microbulbifer 88 0 1 407 species 260552 Microbulbifer agarilyticus Microbulbifer thermotolerans species 252514 0 1 718 Microbulbifer aggregans 750 1 0 species 1769779 Cellvibrionaceae 15 4322 12 0 1 1706371 family genus 1 447467 753 2 0 5 Simiduia Simiduia agarivorans 0 748 1 447471 species Saccharophagus 2 0 473 2 genus 316625 1 0 471 1 86304 species Saccharophagus degradans 11 Cellvibrio genus 1 10 4 2239 0 Cellvibrio japonicus 0 739 1 species 155077 no rank 2624793 1489 2 0 1987723 species 1 813 0 Cellvibrio sp. PSBB006 Cellvibrio sp. PSBB023 1945512 species 0 1 676 2 Agarilytica 1 2036021 genus 2 337 0 1737490 species 335 1 0 Agarilytica rhodophyticola 505 1 0 genus 2425 species 2426 0 1 505 Teredinibacter turnerae 112 Cardiobacteriales 135615 1 order 0 3 271 Cardiobacteriaceae 1 2 159 0 1 868 family 0 1 158 869 genus Dichelobacter nodosus 158 1 0 species 870 1766 2 0 33811 no rank endosymbiont of unidentified scaly snail isolate Monju 0 1 949 species 1248727 species 83406 0 817 1 gamma proteobacterium HdN1 Vibrionales 7 0 43 17820 order 135623 1 0 42 17813 family 641 1 Vibrionaceae 223 genus 1 511678 4 1038 0 121 Aliivibrio species 80852 1 397 0 Aliivibrio wodanis 668 species 304 1 0 Aliivibrio fischeri Aliivibrio salmonicida 40269 species 0 216 1 14114 30 0 1 662 genus Vibrio 327 1891919 species group 360 1 0 0 1 360 29498 species Vibrio tubiashii 1 551 0 species 666 Vibrio cholerae 212663 species 0 1 253 Vibrio tasmaniensis Vibrio hyugaensis 173 1 0 species 1534743 190893 species 545 1 0 Vibrio coralliilyticus 0 336 1 species 1435069 Vibrio tritonius Vibrio furnissii 29494 species 1 775 0 Vibrio mimicus 673 1 0 species 674 Vibrio nigripulchritudo 310 1 0 species 28173 Vibrio scophthalmi 0 1 287 45658 species 0 1217 1 672 species Vibrio vulnificus 0 1 575 species 55601 Vibrio anguillarum Vibrio gazogenes species 687 0 1 707 species 553239 1 394 0 Vibrio breoganii 717610 species group 10 4844 0 Vibrio campbellii species 680 732 1 0 Vibrio rotiferianus species 190895 0 1 267 Vibrio owensii species 696485 1 479 0 Vibrio parahaemolyticus 0 638 1 670 species species subgroup 2315253 0 710 2 449 1 0 50719 species Vibrio diabolicus species 150340 261 1 0 Vibrio antiquarius 0 1 162 766224 species Vibrio jasicida species 663 1 965 0 Vibrio alginolyticus Vibrio natriegens 0 564 1 691 species species 669 1 327 0 Vibrio harveyi 1 741 0 676 species Vibrio fluvialis 0 2 578 no rank 2614977 Vibrio sp. EJY3 1116375 species 1 279 0 Vibrio sp. 2521-89 2014742 species 0 299 1 Vibrio qinghaiensis 1 296 0 species 2025808 species 52443 0 172 1 Vibrio tapetis genus 2042066 0 1 296 1755811 species 0 1 296 Paraphotobacterium marinum 8 Grimontia genus 246861 1 0 297 2 Grimontia hollisae species 673 0 1 289 0 4 1845 657 1 genus Photobacterium 77 Photobacterium damselae 0 1 769 38293 species Photobacterium gaetbulicola 1 606 0 species 1295392 Photobacterium profundum 1 393 0 74109 species 0 167 1 phylum 2138240 0 167 1 class 2138243 0 167 1 2138246 order family 2138247 167 1 0 0 167 1 genus 68335 Coprothermobacter proteolyticus 0 1 167 species 35786 0 255 34763 2157 superkingdom Euryarchaeota 4 31458 211 0 phylum 1 28890 clade 2283794 37 4981 0 1 Methanococci 183939 1 class 0 2106 15 order 1 2182 2105 14 0 2 Methanococcales family 196117 0 8 851 genus 196119 1 0 2 220 6 Methanotorris 2189 species 0 214 1 Methanotorris igneus 0 631 6 196118 genus 2641196 no rank 140 1 0 Methanocaldococcus sp. FS406-22 644281 species 1 140 0 34 1 0 67760 species Methanocaldococcus infernus Methanocaldococcus vulcanius 0 1 123 73913 species 130 1 0 species 1301915 Methanocaldococcus bathoardescens species 83171 0 1 115 Methanocaldococcus fervens Methanocaldococcus jannaschii 2190 species 89 1 0 0 5 1252 family 2183 genus 155862 0 221 1 Methanothermococcus okinawensis 0 1 221 155863 species 2184 genus 1031 4 0 Methanococcus aeolicus 42879 species 0 1 94 1 694 0 39152 species Methanococcus maripaludis Methanococcus vannielii 2187 species 0 150 1 Methanococcus voltae 93 1 0 2188 species 183925 1 class 0 22 2875 1 Methanobacteria order 2158 0 21 2874 Methanobacteriaceae 1 20 2819 0 family 1 2159 2316 genus 1 200 0 Methanosphaera stadtmanae 2317 species 1 200 0 genus 2160 0 883 7 0 130 1 species 868131 Methanobacterium paludis 2 225 0 no rank 2627676 Methanobacterium sp. MB1 species 1379702 0 103 1 Methanobacterium sp. MZ-A1 1 122 0 species 1911685 Methanobacterium congolense 1 70 0 species 118062 species 877455 0 1 131 Methanobacterium lacus 0 85 1 59277 species Methanobacterium subterraneum 2162 species 0 1 242 Methanobacterium formicicum 1 Methanothermobacter genus 145260 1 0 236 5 0 41 1 species 145263 Methanothermobacter marburgensis Methanothermobacter wolfeii 0 14 1 145261 species 2631116 no rank 0 1 102 866790 species 0 1 102 Methanothermobacter sp. CaT2 78 1 0 145262 species Methanothermobacter thermautotrophicus 0 6 1499 2172 genus 0 2 272 2638681 no rank 0 1 156 1609968 species Methanobrevibacter sp. YE315 Methanobrevibacter sp. AbM4 1 116 0 species 224719 Methanobrevibacter millerae 1 273 0 230361 species Methanobrevibacter smithii 486 1 0 2173 species Methanobrevibacter ruminantium species 83816 0 1 232 294671 species 1 236 0 Methanobrevibacter olleyae 2178 family 0 55 1 0 1 55 2179 genus 55 1 0 2180 species Methanothermus fervidus 2290931 clade 0 107 19712 Methanomicrobia 28 46 9676 0 class 1 224756 Methanocellales 1 454 4 0 order 1 570264 0 3 453 570265 family 1 Methanocella 1 570266 genus 3 453 0 1175444 species 1 174 0 Methanocella conradii species 1175445 0 1 278 Methanocella arvoryzae 0 3270 13 2191 1 order Methanomicrobiales 3 88404 family 0 1 264 264 1 0 genus 2192 species 83984 0 1 264 Methanocorpusculum labreanum 196137 family 194 1 0 0 1 194 2202 genus 0 1 194 species 2203 Methanospirillum hungatei 0 5 1871 family 2194 1 45989 genus 1724 4 0 6 Methanoculleus Methanoculleus bourgensis 83986 species 1 572 0 Methanoculleus marisnigri species 2198 0 589 1 557 1 0 no rank 2619537 species 86622 0 557 1 Methanoculleus sp. MAB1 230355 genus 1 147 0 Methanolacinia petrolearia 0 1 147 species 54120 0 938 5 1198451 family 1 Methanosphaerula genus 475087 1 0 2 288 Methanosphaerula palustris species 475088 1 287 0 0 650 3 genus 395331 1 Methanoregula 2 Methanoregula formicica 0 1 465 species 882104 358766 species 1 183 0 Methanoregula boonei 5924 28 0 order 1 94695 Methanosarcinales 9 4 628 0 1 143067 family Methanosaetaceae 7 1 Methanothrix 2222 1 genus 0 3 621 Methanosaeta harundinacea 0 1 402 301375 species 0 218 1 2223 species Methanothrix soehngenii 5287 23 0 family 1 2206 Methanosarcinaceae 11 430 2 0 genus 2175 Methanohalophilus halophilus species 2177 0 1 291 1 139 0 2176 species Methanohalophilus mahii 211 1 0 genus 2321 211 1 0 species 2322 Methanohalobium evestigatum Methanolobus 1 0 117 2 genus 2220 1 Methanolobus psychrophilus 420950 species 0 1 116 0 2 173 genus 2225 Methanococcoides burtonii 29291 species 1 89 0 84 1 0 species 2226 Methanococcoides methylutens 0 223 1 genus 101191 101192 species 1 223 0 Methanomethylovorans hollandica genus 2207 1 0 3911 13 15 Methanosarcina Methanosarcina mazei 2209 species 0 411 1 0 1 403 418008 species Methanosarcina horonobensis 170861 species 136 1 0 Methanosarcina lacustris 0 1095 4 no rank 2644672 1434102 species 1 255 0 Methanosarcina sp. WH1 species 1434099 1 325 0 Methanosarcina sp. Kolksee 0 272 1 species 1434100 Methanosarcina sp. MTP4 species 1434103 0 243 1 Methanosarcina sp. WWM596 Methanosarcina vacuolata 2215 species 268 1 0 1 403 0 38027 species Methanosarcina siciliae 130 1 0 species 2210 Methanosarcina thermophila Methanosarcina barkeri species 2208 0 877 1 1 173 0 species 2214 Methanosarcina acetivorans 211 1 0 genus 196136 Methanosalsum zhilinae species 39669 0 1 211 61 10036 0 class 1 183963 Halobacteria 72 0 18 3202 order 1644060 1 Natrialbales 32 Natrialbaceae 41 0 17 3170 family 1644061 1 1 121 0 2256 genus species 44930 0 1 121 Natronobacterium gregoryi 353799 genus 0 1 313 353800 species 0 313 1 Halostagnicola larsenii 2 556 0 121871 genus 0 1 195 588898 species Haloterrigena daqingensis 0 1 361 62320 species Haloterrigena turkmenica 1 Halopiger genus 1 387342 259 2 0 258 1 0 species 387343 Halopiger xanaduensis 1 334 0 29287 genus Natronococcus occultus 29288 species 334 1 0 1 Salinarchaeum genus 1269201 1 0 265 2 264 1 0 2621923 no rank 1 264 0 1333523 species Salinarchaeum sp. Harcht-Bsk1 Natrinema 3 3 401 0 genus 1 88723 2622230 no rank 0 1 227 Natrinema sp. J7-2 0 1 227 species 406552 Natrinema pellirubrum 0 1 171 species 69525 1 Natrialba 1 63742 genus 524 2 0 Natrialba magadii 0 523 1 species 13769 4 Halobiforma 203193 1 genus 0 2 356 species 229731 0 1 352 Halobiforma lacisalsi Halobacteriales 45 0 4139 25 order 2235 1 0 2717 15 1963268 1 family Haloarculaceae 47 35 Haloarcula 1 2237 genus 1007 5 0 0 1 259 no rank 2624677 259 1 0 1592728 species Haloarcula sp. CBA1115 0 175 1 species 2238 Haloarcula marismortui 1932004 species 161 1 0 Haloarcula taiwanensis Haloarcula hispanica species 51589 0 377 1 genus 1073987 1 0 2 318 7 Halorientalis 0 311 1 2648975 no rank 0 311 1 1932360 species Halorientalis sp. IM1011 203135 1 genus 0 2 336 5 Halomicrobium 0 1 331 species 57705 Halomicrobium mukohataei Natronomonas 1 3 494 0 genus 1 63743 species 416273 0 299 1 Natronomonas moolapensis 0 1 194 2257 species Natronomonas pharaonis 0 515 2 genus 146825 1 348 0 146826 species Halorhabdus utahensis 430914 species 0 1 167 Halorhabdus tiamatea 17 Halobacteriaceae 1 2236 family 9 1377 0 1656823 genus 1 113 0 0 1 113 species 1604004 Halanaeroarchaeum sulfurireducens 231 2 0 1 332246 genus Halalkalicoccus 6 Halalkalicoccus jeotgali 1 225 0 species 413810 1980514 genus 1 171 0 species 1873524 1 171 0 Halodesulfurarchaeum formicicum 13 Halobacterium genus 1 2239 4 845 0 253 1 0 no rank 2668073 Halobacterium sp. DL1 0 253 1 species 751944 Halobacterium salinarum 2242 species 0 291 1 Halobacterium hubeiense species 1407499 288 1 0 1 1644055 order 17 2623 0 55 Haloferacales 1 211 0 2678336 no rank halophilic archaeon DL31 1 211 0 756883 species 8 1405 0 1 1644056 family Haloferacaceae 4 60846 1 genus 0 254 2 3 Halogeometricum 0 1 251 60847 species Halogeometricum borinquense Haloferax 24 4 1071 0 1 2251 genus Haloferax volcanii species 2246 0 1 323 Haloferax gibbonsii 35746 species 292 1 0 species 2252 1 432 0 Haloferax mediterranei 293431 genus 0 1 76 Haloquadratum walsbyi species 293091 0 1 76 0 952 7 1963271 1 family Halorubraceae 5 1644057 genus 384 1 0 Salinigranum rubrum 0 1 384 species 755307 26 Halorubrum 56688 1 genus 0 372 3 Halorubrum lacusprofundi 2247 species 0 170 1 Halorubrum trapanicum 0 1 176 species 29284 Halopenitus 14 191 2 0 1 1209988 genus Halopenitus persicus species 1048396 1 177 0 183980 1 class 0 8 623 1 Archaeoglobi 2231 order 0 622 7 0 622 7 2232 family 220 2 0 genus 190818 Geoglobus ahangari 104 1 0 113653 species 565033 species 0 116 1 Geoglobus acetivorans 54260 genus 0 1 90 Ferroglobus placidus 54261 species 0 90 1 2233 genus 4 312 0 2234 species 105 1 0 Archaeoglobus fulgidus 0 92 1 1316941 species Archaeoglobus sulfaticallidus species 58290 82 1 0 Archaeoglobus veneficus 0 1 33 84156 species Archaeoglobus profundus 2 Thermococci class 183968 1 0 3863 40 19 Thermococcales 2258 1 order 0 39 3861 9 Thermococcaceae family 1 2259 38 3842 0 83867 genus 37 1 0 971279 species 0 37 1 Palaeococcus pacificus genus 2260 416 7 0 Pyrococcus kukulkanii species 1609559 1 39 0 species 53953 0 1 82 Pyrococcus horikoshii 2629106 no rank 0 67 2 0 19 1 1183377 species Pyrococcus sp. ST04 48 1 0 342949 species Pyrococcus sp. NA2 species 2261 1 171 0 Pyrococcus furiosus Pyrococcus abyssi 29292 species 1 8 0 Pyrococcus yayanosii species 1008460 49 1 0 genus 2263 1 0 29 3380 33 Thermococcus Thermococcus litoralis 2265 species 0 1 116 0 133 1 species 172049 Thermococcus sibiricus Thermococcus chitonophagus 54262 species 0 41 1 Thermococcus cleftensis 0 67 1 163003 species Thermococcus gammatolerans 1 240 0 187878 species species 311400 0 103 1 Thermococcus kodakarensis 71997 species 80 1 0 Thermococcus gorgonarius 1 170 0 72803 species Thermococcus siculi 55802 species 0 1 152 Thermococcus barophilus Thermococcus onnurineus species 342948 1 53 0 Thermococcus radiotolerans 0 1 223 187880 species Thermococcus barossii 180 1 0 species 54077 Thermococcus pacificus 71998 species 171 1 0 277988 species 1 79 0 Thermococcus thioreducens Thermococcus peptonophilus 0 62 1 species 53952 Thermococcus guaymasensis 110164 species 0 1 84 0 764 6 no rank 2627626 0 1 99 2016361 species Thermococcus sp. EXT12c species 2008440 0 1 160 Thermococcus sp. 5-4 0 1 125 species 1674923 Thermococcus sp. 2319x1 Thermococcus sp. AM4 0 1 154 species 246969 Thermococcus sp. 4557 species 1042877 0 1 194 species 122420 0 32 1 Thermococcus sp. P6 0 1 57 species 1505907 Thermococcus eurythermalis Thermococcus profundus species 49899 1 110 0 species 195522 117 1 0 Thermococcus nautili 89 1 0 species 1712654 Thermococcus piezophilus 1 127 0 582419 species Thermococcus paralvinellae Thermococcus celer 0 1 129 species 2264 0 18 2275 2283796 clade 0 16 2104 183967 1 class Thermoplasmata 8 2301 order 8 1243 0 0 2 215 family 46659 2302 genus 0 2 215 2303 species 30 1 0 Thermoplasma acidophilum Thermoplasma volcanium 50339 species 0 1 185 365 2 0 90142 family 74968 genus 2 365 0 0 1 203 species 97393 Ferroplasma acidarmanus Ferroplasma acidiphilum species 74969 0 162 1 48 2 0 family 1747776 1747777 1 genus 0 2 48 1 Cuniculiplasma Cuniculiplasma divulgatum 0 1 47 1673428 species 1919231 no rank 367 1 0 1054217 species 1 367 0 Thermoplasmatales archaeon BRNA1 family 46630 0 1 248 46631 genus 248 1 0 Picrophilus torridus 248 1 0 82076 species 1 1235850 order 509 6 0 1 Methanomassiliicoccales 2 272 0 2517203 family 7 Candidatus Methanomethylophilus 1 1291539 genus 2 272 0 species 1291540 0 265 1 Candidatus Methanomethylophilus alvus Methanomassiliicoccaceae 3 0 236 3 family 1577788 1 1080709 genus 1 168 0 Candidatus Methanomassiliicoccus intestinalis 168 1 0 species 1406512 65 1 0 genus 1607807 Candidatus Methanoplasma termitum 0 1 65 species 1577791 1 344 0 1234666 no rank 0 1 344 species 1495144 methanogenic archaeon ISO4-H5 2 171 0 1803510 clade 379546 genus 0 171 2 no rank 2633939 63 1 0 Aciduliprofundum sp. MAR08-339 species 673860 1 63 0 108 1 0 species 379547 Aciduliprofundum boonei 0 1 56 clade 1783276 0 1 56 phylum 1801631 genus 2490204 56 1 0 1920749 species 56 1 0 Candidatus Micrarchaeota archaeon Mia14 43 3249 0 1783275 clade 0 32 2449 phylum 28889 class 183924 2449 32 0 114380 order 11 541 0 2307 family 3 173 0 genus 2308 1 95 0 Pyrodictium delaneyi 1 95 0 1273541 species 1 15 0 54251 genus 0 15 1 species 54252 Pyrolobus fumarii 1 63 0 genus 54247 species 54248 1 63 0 Hyperthermus butylicus family 2272 368 8 0 477695 genus 27 1 0 1 27 0 1200300 species Thermogladius calderae 2 30 0 genus 54258 Ignicoccus islandicus 0 10 1 species 54259 1 20 0 species 160233 Ignicoccus hospitalis 2 193 0 2279 genus Staphylothermus marinus species 2280 1 54 0 0 139 1 species 84599 Staphylothermus hellenicus 0 1 25 54253 genus species 54254 25 1 0 Thermosphaera aggregans 2273 genus 2 93 0 species 2275 1 63 0 Desulfurococcus mucosus species 94694 0 1 30 Desulfurococcus amylolyticus 8 1007 0 2281 order 118883 family 0 8 1007 0 2 204 41980 genus Metallosphaera cuprina 117 1 0 1006005 species 43687 species 0 1 87 Metallosphaera sedula genus 2284 0 3 499 92 1 0 2641160 no rank 0 1 92 species 1891280 Sulfolobus sp. A20 Sulfolobus islandicus 43080 species 0 380 1 Sulfolobus acidocaldarius 0 27 1 2285 species 108 1 0 genus 12914 0 1 108 species 563177 Acidianus hospitalis genus 2100760 0 37 1 0 37 1 2287 species Sulfolobus solfataricus 0 159 1 69655 genus 1 159 0 111955 species Sulfolobus tokodaii 0 812 11 order 2266 1 Thermoproteales 7 family 114378 532 4 0 genus 2268 4 532 0 15 1 0 species 1550241 Thermofilum uzonense species 1365176 0 1 241 Thermofilum adornatus species 1483572 0 1 247 Thermofilum carboxyditrophus 2269 species 0 29 1 Thermofilum pendens 2267 family 0 6 273 2270 genus 2 125 0 Thermoproteus tenax species 2271 1 64 0 species 184117 0 61 1 Thermoproteus uzoniensis 2 98 0 genus 164450 Vulcanisaeta moutnovskia 985052 species 33 1 0 Vulcanisaeta distributa 65 1 0 species 164451 1 19 0 76886 genus species 76887 19 1 0 Caldivirga maquilingensis 31 1 0 genus 2276 1 31 0 2277 species Pyrobaculum islandicum 89 2 0 871006 order 871007 family 0 31 1 genus 105850 0 31 1 0 1 31 242703 species Acidilobus saccharovorans 255472 family 1 58 0 58 1 0 200414 genus 200415 species 0 58 1 Caldisphaera lagunensis 0 1 19 phylum 51967 19 1 0 genus 498845 Candidatus Korarchaeum cryptofilum 0 1 19 species 498846 781 10 0 phylum 651137 210 3 0 651142 no rank 109 1 0 genus 1593364 Candidatus Nitrosopelagicus brevis 109 1 0 species 1410606 genus 1825023 0 101 2 species 1846278 0 1 52 Candidatus Nitrosotenuis sp. AQ6f 0 1 49 1603555 species Candidatus Nitrosotenuis cloacae 1 1643678 class 3 235 0 1 Nitrososphaeria order 1033996 1 224 0 0 224 1 1033997 family 497726 genus 0 224 1 1034015 species 1 224 0 Nitrososphaera viennensis order 1968909 0 1 10 1 10 0 1968910 family genus 498374 0 10 1 Candidatus Nitrosocaldus islandicus 0 10 1 2045011 species 31932 order 0 4 336 338190 1 family 0 4 336 1 Nitrosopumilaceae 223 2 0 genus 338191 Candidatus Nitrosopumilus sediminis species 1229909 122 1 0 species 1580092 101 1 0 Candidatus Nitrosopumilus adriaticus 1993653 genus 112 1 0 Candidatus Nitrosomarinus catalina 1898749 species 0 112 1