members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4386 30 11026580 35886 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 2157 0 superkingdom 229 52746 clade 1 12 0 1783276 phylum 1 12 0 1801631 2490204 0 1 genus 12 1920749 0 Candidatus Micrarchaeota archaeon Mia14 species 1 12 47365 1 187 phylum Euryarchaeota 1 28890 0 5007 16 clade 0 2283796 0 1803510 clade 2 60 genus 2 60 379546 0 2633939 0 9 1 no rank Aciduliprofundum sp. MAR08-339 0 673860 9 1 species 1 species 51 0 379547 Aciduliprofundum boonei class 14 7 4947 183967 1 0 Thermoplasmata 692 order 4 0 1235850 2 family 583 0 2517203 Candidatus Methanomethylophilus 1291539 1 0 583 3 genus 2 0 1291540 Candidatus Methanomethylophilus alvus 1 species 580 109 family 2 0 1577788 1 genus 87 1080709 0 1406512 0 Candidatus Methanomassiliicoccus intestinalis species 1 87 1 genus 22 1607807 0 22 1 species Candidatus Methanoplasma termitum 0 1577791 1 2301 0 Thermoplasmatales 8 order 1 1999 46659 0 2 family 32 2302 0 2 genus 32 2303 0 Thermoplasma acidophilum 1 species 8 1 species 24 50339 0 Thermoplasma volcanium 91 family 2 90142 0 74968 0 genus 2 91 species 1 31 74969 0 Ferroplasma acidiphilum 60 species 1 Ferroplasma acidarmanus 97393 0 1 family 24 0 1747776 1 genus 24 1747777 0 1 species 24 1673428 0 Cuniculiplasma divulgatum 1 family 474 0 46630 0 46631 1 genus 474 82076 0 Picrophilus torridus 1 species 474 1919231 0 1377 1 no rank species 1 1377 0 1054217 Thermoplasmatales archaeon BRNA1 1234666 0 2249 1 no rank 1495144 0 methanogenic archaeon ISO4-H5 species 1 2249 2290931 0 24228 90 clade 7043 12 class 50 Halobacteria 0 183963 1 22 order 6 2527 1 2235 0 Halobacteriales family 13 2345 1 1963268 1 0 Haloarculaceae Haloarcula 2237 1 0 19 1660 5 genus 0 51589 Haloarcula hispanica 1 species 588 2624677 0 1 no rank 628 Haloarcula sp. CBA1115 0 1592728 628 species 1 Haloarcula taiwanensis 1932004 0 305 species 1 2238 0 Haloarcula marismortui 1 species 120 25 1 genus 2 Halomicrobium 0 203135 1 1 species 24 0 57705 Halomicrobium mukohataei 43 2 genus 63743 0 Natronomonas pharaonis 2257 0 33 species 1 Natronomonas moolapensis 416273 0 10 1 species 146825 0 164 2 genus 0 146826 Halorhabdus utahensis species 1 101 Halorhabdus tiamatea 0 430914 63 1 species 0 1073987 genus 1 452 452 no rank 1 0 2648975 452 1 species Halorientalis sp. IM1011 0 1932360 0 2236 1 Halobacteriaceae family 8 176 1 Halanaeroarchaeum 0 1656823 1 8 1 genus 2 Halanaeroarchaeum sulfurireducens 0 1604004 7 species 1 genus 1 16 332246 0 16 species 1 Halalkalicoccus jeotgali 0 413810 45 genus 1 1980514 0 1 species 45 0 1873524 Halodesulfurarchaeum formicicum 106 genus 3 2239 0 species 1 54 0 1407499 Halobacterium hubeiense 0 2668073 1 no rank 29 0 751944 Halobacterium sp. DL1 1 species 29 species 1 23 0 2242 Halobacterium salinarum Haloferacales 0 1 1644055 2996 4 order 14 family 7 3 2314 1644056 1 0 Haloferacaceae 60846 0 569 1 genus 569 1 species Halogeometricum borinquense 60847 0 2251 1 0 Haloferax genus 4 1473 1 2246 0 Haloferax volcanii species 1 873 35746 0 Haloferax gibbonsii 1 species 488 Haloferax mediterranei 2252 0 111 species 1 293431 0 genus 1 269 species 1 269 0 293091 Haloquadratum walsbyi 2678336 0 17 1 no rank 756883 0 halophilic archaeon DL31 1 species 17 661 1 5 family Halorubraceae 0 1 1963271 genus 1 39 0 1209988 39 species 1 Halopenitus persicus 0 1048396 63 2 genus 0 56688 21 species 1 Halorubrum lacusprofundi 2247 0 1 species 42 0 29284 Halorubrum trapanicum 1644057 0 558 genus 1 Salinigranum rubrum 0 755307 558 species 1 13 order 1508 6 0 1644060 1 Natrialbales family 12 1502 5 1644061 1 0 Natrialbaceae 0 203193 86 genus 1 1 species 86 0 229731 Halobiforma lacisalsi 35 genus 1 0 353799 353800 0 Halostagnicola larsenii species 1 35 29287 0 75 genus 1 29288 0 Natronococcus occultus 1 species 75 156 1 genus 0 2256 species 1 156 0 44930 Natronobacterium gregoryi 0 88723 88 2 genus 1 species 32 0 69525 Natrinema pellirubrum 0 2622230 1 no rank 56 406552 0 Natrinema sp. J7-2 species 1 56 424 1 genus 63742 0 424 species 1 Natrialba magadii 0 13769 0 387342 1 genus 61 species 1 61 387343 0 Halopiger xanaduensis 0 121871 56 2 genus Haloterrigena turkmenica 0 62320 16 1 species 1 species 40 0 588898 Haloterrigena daqingensis 1 genus 516 0 1269201 0 2621923 516 1 no rank species 1 516 0 1333523 Salinarchaeum sp. Harcht-Bsk1 class 40 17185 218 0 1 224756 Methanomicrobia order 12 3097 1 2191 1 0 Methanomicrobiales 811 5 family 0 2194 Methanoculleus 1 45989 0 721 2 4 genus 215 no rank 1 2619537 0 1 species 215 0 86622 Methanoculleus sp. MAB1 Methanoculleus marisnigri 0 2198 265 1 species 0 83986 Methanoculleus bourgensis 1 species 239 0 230355 genus 1 90 54120 0 Methanolacinia petrolearia species 1 90 517 1 family 88404 0 genus 1 517 0 2192 Methanocorpusculum labreanum 83984 0 517 1 species family 2 231 196137 0 2 genus 1 231 1 2202 0 Methanospirillum Methanospirillum hungatei 2203 0 230 1 species 1537 3 family 0 1198451 395331 0 genus 2 1321 358766 0 Methanoregula boonei 1 species 40 0 882104 Methanoregula formicica 1 species 1281 216 genus 1 475087 0 Methanosphaerula palustris 0 475088 216 species 1 25 order 12536 1 1 94695 0 Methanosarcinales 0 2206 1 Methanosarcinaceae family 22 146 11691 730 1 genus 196136 0 species 1 730 0 39669 Methanosalsum zhilinae genus 2 1204 2225 0 Methanococcoides methylutens 0 2226 950 species 1 254 1 species Methanococcoides burtonii 29291 0 101191 0 genus 1 634 0 101192 Methanomethylovorans hollandica species 1 634 2 genus 174 2175 0 59 1 species Methanohalophilus halophilus 2177 0 115 species 1 Methanohalophilus mahii 2176 0 genus 1 608 0 2321 1 species 608 2322 0 Methanohalobium evestigatum genus 13 8061 82 1 2207 0 Methanosarcina 2215 0 Methanosarcina vacuolata 1 species 759 2644672 0 no rank 4 2244 Methanosarcina sp. MTP4 0 1434100 238 1 species 800 species 1 Methanosarcina sp. WH1 0 1434102 1 species 878 1434103 0 Methanosarcina sp. WWM596 0 1434099 Methanosarcina sp. Kolksee 1 species 328 1163 species 1 Methanosarcina barkeri 0 2208 species 1 568 170861 0 Methanosarcina lacustris 1 species 157 2210 0 Methanosarcina thermophila 1 species 242 0 38027 Methanosarcina siciliae 1425 1 species Methanosarcina horonobensis 418008 0 1077 species 1 Methanosarcina mazei 0 2209 Methanosarcina acetivorans 2214 0 344 species 1 1 genus 134 0 2220 species 1 134 0 420950 Methanolobus psychrophilus 0 143067 2 family 844 844 2 genus 2222 0 Methanosaeta harundinacea 301375 0 601 1 species 2223 0 Methanothrix soehngenii 1 species 243 1334 order 2 570264 0 2 family 1334 0 570265 570266 0 1334 2 genus 329 1 species Methanocella conradii 1175444 0 1 species 1005 1175445 0 Methanocella arvoryzae 0 2283794 9781 clade 31 class 12 4014 183939 0 4014 order 12 0 2182 196117 0 1595 family 7 0 196118 genus 6 1544 species 1 25 83171 0 Methanocaldococcus fervens 1089 species 1 Methanocaldococcus bathoardescens 1301915 0 108 species 1 Methanocaldococcus vulcanius 0 73913 151 no rank 1 0 2641196 151 1 species Methanocaldococcus sp. FS406-22 644281 0 92 species 1 Methanocaldococcus infernus 67760 0 0 2190 Methanocaldococcus jannaschii species 1 79 196119 0 51 1 genus Methanotorris igneus 0 2189 51 1 species 5 family 2419 0 2183 2313 4 genus 0 2184 0 42879 Methanococcus aeolicus 1 species 99 2187 0 Methanococcus vannielii 1 species 261 Methanococcus maripaludis 0 39152 1639 1 species 0 2188 Methanococcus voltae 1 species 314 106 1 genus 0 155862 species 1 106 0 155863 Methanothermococcus okinawensis 0 183925 5767 19 class 0 2158 19 order 5767 567 family 1 2178 0 1 genus 567 0 2179 species 1 567 0 2180 Methanothermus fervidus 2159 0 18 family 5200 0 2160 2231 7 genus 273 no rank 2 2627676 0 Methanobacterium sp. MZ-A1 0 1911685 202 1 species 1379702 0 Methanobacterium sp. MB1 1 species 71 596 1 species Methanobacterium congolense 118062 0 species 1 113 0 59277 Methanobacterium subterraneum 607 species 1 Methanobacterium formicicum 0 2162 Methanobacterium lacus 0 877455 543 1 species 99 species 1 Methanobacterium paludis 868131 0 0 145260 122 genus 4 40 species 1 Methanothermobacter thermautotrophicus 0 145262 0 2631116 40 no rank 1 866790 0 Methanothermobacter sp. CaT2 1 species 40 1 species 21 145261 0 Methanothermobacter wolfeii 145263 0 Methanothermobacter marburgensis 1 species 21 2316 0 genus 1 522 1 species 522 2317 0 Methanosphaera stadtmanae 0 2172 genus 6 2325 0 83816 Methanobrevibacter ruminantium 1 species 762 2173 0 Methanobrevibacter smithii 1 species 296 Methanobrevibacter millerae 230361 0 988 species 1 173 2 no rank 0 2638681 64 species 1 Methanobrevibacter sp. YE315 0 1609968 109 1 species Methanobrevibacter sp. AbM4 224719 0 0 294671 Methanobrevibacter olleyae 1 species 106 Thermococci 0 1 183968 5640 2 class 40 order 39 5638 1 2258 1 0 Thermococcales 38 family 5637 8 1 2259 0 Thermococcaceae 1 genus 27 0 83867 Palaeococcus pacificus 0 971279 27 species 1 29 genus 9 3558 0 1 2263 Thermococcus 23 species 1 Thermococcus peptonophilus 53952 0 Thermococcus gorgonarius 71997 0 31 species 1 27 species 1 Thermococcus chitonophagus 54262 0 53 1 species Thermococcus barossii 0 54077 1 species 106 0 55802 Thermococcus barophilus 1316 1 species Thermococcus paralvinellae 582419 0 1 species 210 71998 0 Thermococcus pacificus 110164 0 Thermococcus guaymasensis species 1 8 species 1 16 72803 0 Thermococcus siculi 2627626 0 6 no rank 346 Thermococcus sp. 4557 1042877 0 23 1 species Thermococcus sp. P6 122420 0 54 species 1 0 2008440 Thermococcus sp. 5-4 species 1 16 species 1 42 2016361 0 Thermococcus sp. EXT12c 171 1 species Thermococcus sp. AM4 246969 0 Thermococcus sp. 2319x1 1674923 0 40 species 1 16 1 species Thermococcus piezophilus 0 1712654 species 1 32 1505907 0 Thermococcus eurythermalis 1 species 175 0 277988 Thermococcus thioreducens 1 species 20 342948 0 Thermococcus onnurineus Thermococcus litoralis 2265 0 82 species 1 Thermococcus sibiricus 172049 0 250 species 1 Thermococcus kodakarensis 311400 0 34 1 species 66 1 species Thermococcus celer 0 2264 13 1 species Thermococcus radiotolerans 0 187880 Thermococcus gammatolerans 187878 0 12 species 1 species 1 598 49899 0 Thermococcus profundus 1 species 104 0 195522 Thermococcus nautili Thermococcus cleftensis 163003 0 11 1 species 2260 0 genus 7 2044 Pyrococcus yayanosii 1008460 0 16 species 1 species 1 12 29292 0 Pyrococcus abyssi 1 species 631 1609559 0 Pyrococcus kukulkanii 1 species 85 0 53953 Pyrococcus horikoshii Pyrococcus furiosus 2261 0 656 1 species 2629106 0 644 no rank 2 0 1183377 Pyrococcus sp. ST04 1 species 13 0 342949 Pyrococcus sp. NA2 species 1 631 Archaeoglobi 1 183980 0 91 2708 9 class 2231 0 2617 order 8 8 family 2617 1 1 2232 0 Archaeoglobaceae 771 genus 1 54260 0 Ferroglobus placidus 54261 0 771 species 1 190818 0 genus 2 871 1 species 858 565033 0 Geoglobus acetivorans 13 species 1 Geoglobus ahangari 0 113653 0 2233 974 genus 4 0 84156 Archaeoglobus profundus species 1 22 species 1 436 0 1316941 Archaeoglobus sulfaticallidus 1 species 482 0 2234 Archaeoglobus fulgidus 34 1 species Archaeoglobus veneficus 0 58290 5369 41 clade 1783275 0 phylum 8 1052 0 651137 0 1643678 class 2 29 order 1 6 0 1968909 1 family 6 0 1968910 498374 0 6 1 genus 0 2045011 Candidatus Nitrosocaldus islandicus 1 species 6 1033996 0 order 1 23 1033997 0 family 1 23 497726 0 1 genus 23 Nitrososphaera viennensis 0 1034015 23 1 species 3 no rank 488 651142 0 36 genus 2 1825023 0 species 1 17 0 1846278 Candidatus Nitrosotenuis sp. AQ6f 1603555 0 Candidatus Nitrosotenuis cloacae species 1 19 452 genus 1 1593364 0 Candidatus Nitrosopelagicus brevis 1410606 0 452 1 species 0 31932 order 3 535 535 3 family 0 338190 2 genus 475 338191 0 1229909 0 Candidatus Nitrosopumilus sediminis 1 species 85 390 1 species Candidatus Nitrosopumilus adriaticus 1580092 0 60 1 genus 1993653 0 1898749 0 Candidatus Nitrosomarinus catalina 1 species 60 1 phylum 15 0 51967 0 498845 15 genus 1 Candidatus Korarchaeum cryptofilum 498846 0 15 1 species 4302 phylum 32 28889 0 4302 class 32 0 183924 2574 8 order 0 2281 2574 8 family 118883 0 0 41980 2 genus 193 Metallosphaera sedula 0 43687 178 species 1 Metallosphaera cuprina 1006005 0 15 1 species 0 2100760 genus 1 70 70 1 species Sulfolobus solfataricus 2287 0 12914 0 1 genus 1321 species 1 1321 563177 0 Acidianus hospitalis 96 1 genus 0 69655 111955 0 Sulfolobus tokodaii species 1 96 genus 3 894 2284 0 73 1 species Sulfolobus acidocaldarius 0 2285 0 2641160 no rank 1 23 Sulfolobus sp. A20 0 1891280 23 species 1 0 43080 Sulfolobus islandicus species 1 798 52 order 2 0 871006 1 family 47 255472 0 200414 0 47 genus 1 47 1 species Caldisphaera lagunensis 0 200415 871007 0 1 family 5 5 genus 1 0 105850 5 species 1 Acidilobus saccharovorans 242703 0 1233 order 10 0 2266 2267 0 family 6 184 109 genus 2 164450 0 species 1 74 0 164451 Vulcanisaeta distributa Vulcanisaeta moutnovskia 985052 0 35 1 species 0 76886 37 genus 1 Caldivirga maquilingensis 76887 0 37 1 species 19 genus 2 2270 0 Thermoproteus uzoniensis 184117 0 17 species 1 1 species 2 2271 0 Thermoproteus tenax genus 1 19 0 2276 Pyrobaculum islandicum 0 2277 19 species 1 family 4 1049 114378 0 1049 4 genus 2268 0 Thermofilum adornatus 0 1365176 475 species 1 1550241 0 Thermofilum uzonense species 1 91 Thermofilum pendens 2269 0 6 1 species species 1 477 1483572 0 Thermofilum carboxyditrophus 12 order 443 0 114380 Desulfurococcaceae 1 2272 0 116 1 family 9 0 54258 8 2 genus 1 species 1 Ignicoccus islandicus 0 54259 7 1 species Ignicoccus hospitalis 0 160233 0 2279 93 genus 2 84599 0 Staphylothermus hellenicus 1 species 28 65 1 species Staphylothermus marinus 2280 0 2273 0 2 genus 8 0 2275 Desulfurococcus mucosus 1 species 2 Desulfurococcus amylolyticus 94694 0 6 1 species genus 1 1 0 54253 1 species 1 54254 0 Thermosphaera aggregans 5 1 genus 477695 0 species 1 5 1200300 0 Thermogladius calderae 3 family 327 2307 0 genus 1 295 2308 0 295 1 species Pyrodictium delaneyi 0 1273541 0 54251 29 1 genus 0 54252 Pyrolobus fumarii 1 species 29 3 genus 1 0 54247 3 species 1 Hyperthermus butylicus 0 54248 0 1 name 0 Bacteria 2 1 0 10937948 12 4126 superkingdom 5 phylum 1262 0 74152 class 3 548 0 447830 1783344 0 548 3 order 548 5 3 family Endomicrobiaceae 1 1783343 0 1408194 0 543 2 genus 397 species 1 Endomicrobium proavitum 1408281 0 species 1 146 1408204 0 Candidatus Endomicrobium trichonymphae 641853 0 580 class 1 580 order 1 641854 0 580 1 family 0 641876 423604 0 580 1 genus Elusimicrobium minutum 423605 0 580 1 species 0 99260 1 no rank 134 uncultured Termite group 1 bacterium 167965 0 134 species 1 0 200783 5641 21 phylum 12 5641 21 class Aquificae 0 1 187857 0 32069 18 order 4547 0 90150 540 2 no rank 1 540 2 genus Thermosulfidibacter 0 412592 1 0 412593 Thermosulfidibacter takaii species 1 539 2131 10 family 0 64898 0 939 genus 1 362 species 1 362 940 0 Hydrogenobacter thermophilus 75905 0 genus 2 687 75906 0 Thermocrinis ruber 1 species 47 0 136094 Thermocrinis albus 1 species 640 1 168657 0 Hydrogenobaculum genus 6 12 593 581 5 no rank 0 2622382 97 species 1 Hydrogenobaculum sp. Y04AAS1 380749 0 1 species 121 547144 0 Hydrogenobaculum sp. HO Hydrogenobaculum sp. SHO 547145 0 121 1 species 547143 0 Hydrogenobaculum sp. 3684 1 species 121 547146 0 Hydrogenobaculum sp. SN species 1 121 2713 0 489 genus 1 489 species 1 Aquifex aeolicus 63363 0 Hydrogenothermaceae 1 224027 0 2 1876 6 family 756 1 genus 3 Sulfurihydrogenibium 212790 1 0 530 1 species Sulfurihydrogenibium azorense 0 309806 225 1 no rank 0 2619248 1 species 225 0 436114 Sulfurihydrogenibium sp. YO3AOP1 genus 2 1 1118 0 182899 1 Persephonella species 1 1117 0 309805 Persephonella marina 0 1485951 1082 2 order 558314 0 2 family 1082 genus 1 89 0 171868 89 1 species Thermovibrio ammonificans 228745 0 64159 0 genus 1 993 species 1 993 0 64160 Desulfurobacterium thermolithotrophum 3097 phylum 7 0 200930 class 7 40 3097 1 68337 0 Deferribacteres Deferribacterales 1 191393 0 2 3057 6 order Deferribacteraceae 191394 1 0 9 3055 family 5 1015 genus 1 0 117999 118000 0 Denitrovibrio acetiphilus 1 species 1015 808 1 genus 545865 0 808 species 1 Calditerrivibrio nitroreducens 0 477976 0 2351 425 genus 1 species 1 425 2352 0 Flexistipes sinusarabici 0 53572 798 1 genus Deferribacter desulfuricans 197162 0 798 species 1 1783270 0 6984305 356 clade clade 346 6977997 68336 0 1134404 0 2164 phylum 6 0 1 795747 Ignavibacteria class 6 41 2164 119 2123 order 5 Ignavibacteriales 0 795748 1 2 family 1036 0 1334117 genus 2 9 1036 0 1134403 1 Melioribacter 1 species 1027 1134405 0 Melioribacter roseus family 2 968 795749 0 1 795750 0 Ignavibacterium 2 genus 968 1 species 1 967 591197 0 Ignavibacterium album 22612 phylum 21 1090 0 21 class 22612 634 191410 1 0 Chlorobia 271 21978 order 20 Chlorobiales 0 1 191411 0 191412 1 Chlorobiaceae family 19 731 21707 274493 0 no rank 8 11921 Chlorobium 0 1091 1 6586 5 5 genus 1 species 2222 1096 0 Chlorobium phaeobacteroides 1 species 1545 337090 0 Chlorobium chlorochromatii 1621 1 species Chlorobium limicola 1092 0 Chlorobium phaeovibrioides 0 1094 1193 species 1 5335 1 3 genus Pelodictyon 1099 1 0 3008 1 species Pelodictyon phaeoclathratiforme 0 34090 2326 1 species Pelodictyon luteolum 1100 0 Prosthecochloris 0 1 1101 3553 19 genus 5 2811 3 no rank 0 2632826 species 1 1503 0 281093 Prosthecochloris sp. GSB1 species 1 1101 0 1868325 Prosthecochloris sp. CIB 2401 207 species 1 Prosthecochloris sp. HL-130-GSB 1974213 0 species 1 723 0 1102 Prosthecochloris aestuarii 4 genus 5073 317 1 256319 0 Chlorobaculum 2508 species 1 Chlorobaculum parvum 0 274539 1511 species 1 Chlorobaculum tepidum 1097 0 0 274537 Chlorobaculum limnaeum species 1 737 100715 0 429 1 genus 429 1 species Chloroherpeton thalassium 100716 0 1 976 0 Bacteroidetes phylum 319 6953221 277 200643 1 0 Bacteroidia class 71 392 6272194 0 1970189 1 Marinilabiliales order 11 13 19875 3 family 9431 3 1 1471398 0 Prolixibacteraceae 9428 92 genus 2 Draconibacterium 0 1471399 1 1168034 0 Draconibacterium orientale 1 species 9336 1573805 1 0 Marinifilaceae family 2 1 4396 0 2060722 1 genus 4395 Marinifilaceae bacterium SPP2 1717717 0 4395 species 1 family 3 3501 5 0 1 558415 Marinilabiliaceae 2 genus 3496 12 0 1193324 1 Alkalitalea 3484 species 1 Alkalitalea saponilacus 889453 0 0 1 1970190 Salinivirgaceae family 2 168 2534 2366 1 genus 1970191 0 2366 1 species Salinivirga cyanobacteriivorans 1307839 0 Bacteroidales 0 1 171549 6251927 4944 order 59 no rank 1 6044 185291 0 1400053 0 Bacteroidales bacterium CF species 1 6044 99305 family 2 1853231 0 Odoribacter 1 283168 0 24 99305 genus 2 28118 0 Odoribacter splanchnicus 1 species 99281 3 family 19494 2 0 2005523 1 Paludibacteraceae 2 genus 19492 6 346096 1 0 Paludibacter Paludibacter propionicigenes 0 185300 19486 1 species Tannerellaceae 0 1 2005525 57 276197 7 family 45898 38 3 genus Tannerella 0 1 195950 22716 no rank 1 0 2620507 Tannerella sp. oral taxon HOT-286 0 712710 22716 species 1 Tannerella forsythia 0 28112 23144 species 1 113 230242 genus 3 Parabacteroides 1 375288 0 0 2649774 1 no rank 180530 species 1 180530 2025876 0 Parabacteroides sp. CT06 49599 1 species Parabacteroides distasonis 823 0 Dysgonamonadaceae 0 2005520 1 80880 3 family 6 genus 2 19942 23 294702 1 0 Proteiniphilum 0 1642647 Proteiniphilum saccharofermentans species 1 19919 genus 1 14101 1784836 0 1562970 0 Fermentimonas caenicola 1 species 14101 0 1 307628 Petrimonas 2 genus 49 46834 Petrimonas mucosa 0 1642646 46785 1 species 0 2005519 1 Barnesiellaceae family 3 14 111716 genus 2 111702 90 1 397864 0 Barnesiella species 1 111612 0 397865 Barnesiella viscericola Porphyromonadaceae 0 1 171551 46 47047 family 4 0 836 1 Porphyromonas 3 genus 40 47001 32982 species 1 Porphyromonas gingivalis 837 0 13979 1 species Porphyromonas asaccharolytica 0 28123 family 5 2 97087 171550 1 0 Rikenellaceae genus 2 24 91851 239759 1 0 Alistipes species 1 91827 214856 0 Alistipes finegoldii 1611681 1 0 Mucinivorans genus 2 1 5234 5233 1 species Mucinivorans hirudinis 1433126 0 945710 no rank 5 333046 0 2 genus 1443 3 0 1 511434 Candidatus Azobacteroides 1440 1 species Candidatus Azobacteroides pseudotrichonymphae 0 511435 944267 genus 3 0 909656 species 1 138227 376805 0 Bacteroides salanitronis 241711 1 species Bacteroides dorei 357276 0 0 821 Bacteroides vulgatus 1 species 564329 1 815 0 Bacteroidaceae 11 family 174 1220271 Bacteroides 0 1 816 61703 1220097 genus 10 Bacteroides caccae 0 47678 96919 species 1 0 28119 Bacteroides zoogleoformans 1 species 63509 0 290053 Bacteroides helcogenes 1 species 76238 62327 1 species Bacteroides heparinolyticus 28113 0 Bacteroides ovatus 0 28116 105329 species 1 Bacteroides cellulosilyticus 0 246787 111517 1 species 326396 species 1 Bacteroides fragilis 817 0 Bacteroides caecimuris 0 1796613 121251 1 species 194908 species 1 Bacteroides thetaiotaomicron 818 0 1 171552 0 Prevotellaceae family 11 469 3343232 0 838 1 Prevotella genus 10 5418 3342763 308153 1 species Prevotella dentalis 52227 0 0 839 Prevotella ruminicola species 1 469443 species 1 476466 0 1177574 Prevotella jejuni Prevotella denticola 28129 0 280804 1 species 1 no rank 94085 2638335 0 Prevotella sp. oral taxon 299 0 652716 94085 1 species Prevotella fusca 0 589436 478273 1 species 548845 species 1 Prevotella melaninogenica 28132 0 0 76123 Prevotella enoeca 1 species 153404 28131 0 Prevotella intermedia 1 species 527872 0 768503 1 Cytophagia class 57 143885 490 56 order 336 143395 0 1 768507 Cytophagales 1937968 1 0 Bernardetiaceae family 3 4 1804 Bernardetia 1 1937972 0 2 1800 genus 2 0 999 Bernardetia litoralis 1 species 1798 family 3 7986 1 1853234 1 0 Persicobacteraceae 12 7985 genus 2 Persicobacter 59740 1 0 2664020 0 1 no rank 7973 Persicobacter sp. JZB09 0 1085624 7973 species 1 563798 0 13392 family 7 0 1 68288 Cyclobacterium 3 genus 5131 4 1070 1 species Cyclobacterium marinum 0 104 species 1 4057 0 320787 Cyclobacterium amurskyense 1 2186 genus 2 Algoriphagus 1 246875 0 2185 species 1 Algoriphagus sp. M8-2 1727163 0 0 390846 3348 1 genus 3348 species 1 Echinicola vietnamensis 0 390884 genus 1 2727 232244 0 1 species 2727 0 232259 Belliella baltica 64240 140 16 family Hymenobacteraceae 0 1853232 1 Pontibacter 323449 1 0 19 16268 genus 3 Pontibacter korlensis 400092 0 11132 species 1 Pontibacter akesuensis 388950 0 5117 species 1 Hymenobacter 89966 1 0 30917 564 8 genus 5 no rank 21788 0 2615202 6823 species 1 Hymenobacter sp. PAMC 26554 0 1484116 5567 1 species Hymenobacter sp. PAMC 26628 1484118 0 1 species 2237 1385663 0 Hymenobacter sp. DG25A species 1 2589 0 1356852 Hymenobacter sp. APR13 0 1385664 Hymenobacter sp. DG25B species 1 4572 Hymenobacter sedentarius 1411621 0 4952 1 species 1 species 3613 0 1446467 Hymenobacter swuensis genus 4 16915 267 1379908 1 0 Rufibacter 6646 1 species Rufibacter tibetensis 0 512763 2639626 0 2 no rank 10002 Rufibacter sp. DG15C 0 1379909 6518 1 species Rufibacter sp. DG31D 0 1379910 3484 species 1 2 2060 family 4 Amoebophilaceae 1501348 1 0 1168 genus 1 273135 0 0 2641185 1 no rank 1168 1 species 1168 0 249402 Cardinium endosymbiont of Encarsia pergandiella genus 2 890 82 0 281119 1 Candidatus Amoebophilus 1 species 808 281120 0 Candidatus Amoebophilus asiaticus 2762301 0 2819 2 family Marivirga 869806 1 0 17 2819 2 genus 2802 1 species Marivirga tractuosa 0 1006 Cytophagaceae 1 89373 0 39131 27 16 family Cytophaga 978 1 0 4991 1 genus 2 4990 1 species Cytophaga hutchinsonii 0 985 2 genus 1 5773 0 861914 1 Fibrella 2620963 0 5772 no rank 1 species 1 5772 0 1834519 Fibrella sp. ES10-3-2-2 Runella 0 1 105 2135 9 genus 2 species 1 2126 106 0 Runella slithyformis 0 1 107 Spirosoma 6 genus 14916 697 1 species 3992 0 1178516 Spirosoma montaniterrae 847 1 species Spirosoma radiotolerans 0 1379870 species 1 2784 2057025 0 Spirosoma sp. HA7 564064 0 Spirosoma rigui species 1 1812 species 1 4784 1211326 0 Spirosoma aerolatum 7085 genus 1 0 120831 Dyadobacter fermentans 0 94254 7085 species 1 genus 2 1 4204 319458 1 0 Leadbetterella 4203 1 species Leadbetterella byssophila 0 316068 Flammeovirgaceae 0 200667 1 11627 3 family 4 1 7178 2 genus Flammeovirga 0 59739 1 0 2637820 1 no rank 7177 Flammeovirga sp. MY04 0 1191459 7177 1 species 0 340671 4446 1 no rank Flammeovirgaceae bacterium 311 0 1257021 4446 1 species Bacteroidetes Order II. Incertae sedis 0 1100069 1 9 4629 order 6 0 1 563843 Rhodothermaceae family 5 37 4620 1 genus 905 0 29548 905 1 species Rhodothermus marinus 29549 0 0 1196022 2484 no rank 1 Rhodothermaceae bacterium RA 1779382 0 2484 species 1 Salinibacter 146918 1 0 1194 1 2 genus Salinibacter ruber 0 146919 1193 species 1 117743 1 0 Flavobacteriia class 140 399821 172 215 399649 139 order Flavobacteriales 0 200644 1 3185 family 2 1853230 0 1 332102 0 Fluviicola 2 genus 4 3185 3181 1 species Fluviicola taffensis 191579 0 0 1333713 2 family 1955 genus 2 1955 3 1 267986 0 Owenweeksia 253245 0 Owenweeksia hongkongensis species 1 1952 1755828 0 833 1 family 0 1755829 genus 1 833 Ichthyobacterium seriolicida 242600 0 833 species 1 39782 0 1526 9 family 0 34098 1 Blattabacterium genus 9 1526 5 565 no rank 6 0 2647581 113 1 species Blattabacterium sp. (Nauphoeta cinerea) 0 1316444 Blattabacterium sp. (Blaberus giganteus) 0 1186051 78 species 1 1 species 254 39768 0 Blattabacterium sp. (Mastotermes darwiniensis) 0 367806 Blattabacterium sp. (Blatta orientalis) 1 species 60 0 367488 Blattabacterium sp. (Periplaneta americana) 1 species 37 624186 0 Blattabacterium sp. (Blattella germanica) species 1 23 627 species 1 Blattabacterium punctulatus 164514 0 0 1653831 Blattabacterium cuenoti 1 species 329 4 no rank 313 313602 0 1940138 1 0 Candidatus Walczuchella genus 2 3 57 0 1415657 Candidatus Walczuchella monophlebidarum 1 species 54 2 genus 1 256 0 336809 1 Candidatus Sulcia 0 336810 Candidatus Sulcia muelleri 1 species 255 109933 20 family 2762318 0 genus 1 3232 0 1013 3232 species 1 Weeksella virosa 0 1014 2782232 0 58936 no rank 10 Chryseobacterium 0 1 59732 37 44768 9 genus 1 species 13951 0 253 Chryseobacterium indologenes species 1 5804 0 1265445 Chryseobacterium camelliae 3 no rank 10976 2593645 0 1 species 2986 2015076 0 Chryseobacterium sp. T16E-39 Chryseobacterium sp. IHB B 17019 1721091 0 3297 1 species 4693 1 species Chryseobacterium sp. StRB126 878220 0 Chryseobacterium gallinarum 1324352 0 9165 species 1 2772 1 species Chryseobacterium piperi 558152 0 Chryseobacterium glaciei 1685010 0 2063 species 1 14168 1 genus 2782228 0 Chryseobacterium taklimakanense 536441 0 14168 1 species 6 genus 18989 45 0 308865 1 Elizabethkingia 3661 1 species Elizabethkingia meningoseptica 238 0 Elizabethkingia genomosp. 4 1756150 0 1434 1 species 1756149 0 Elizabethkingia genomosp. 3 species 1 1688 1 species 8130 1117645 0 Elizabethkingia anophelis 0 172045 Elizabethkingia miricola 1 species 4031 Ornithobacterium 0 28250 1 17 15634 genus 2 15617 1 species Ornithobacterium rhinotracheale 0 28251 0 34084 1 genus 13142 Riemerella anatipestifer 0 34085 13142 1 species 5057 281689 family 100 Flavobacteriaceae 0 1 49546 2700084 0 2523 1 genus Lutibacter sp. LPB0138 0 1850246 2523 species 1 0 83612 1 Psychroflexus 2 genus 1940 1 Psychroflexus torquis 0 57029 1939 species 1 0 336276 653 1 genus 653 no rank 1 2615019 0 2058135 0 Olleya sp. Bg11-27 1 species 653 Nonlabens 363408 1 0 7516 11 genus 5 no rank 2 5031 0 2615035 1 species 3179 0 1476901 Nonlabens sp. MIC269 species 1 1852 0 2058134 Nonlabens sp. MB-3u-79 0 328515 Nonlabens dokdonensis species 1 1180 1294 species 1 Nonlabens sediminis 319236 0 1 76831 0 Myroides 5 genus 409 36898 Myroides odoratimimus 0 76832 20015 species 1 species 1 3232 0 480520 Myroides profundi 0 2642485 13242 no rank 2 Myroides sp. ZB35 1458492 0 8609 species 1 1583100 0 Myroides sp. A21 species 1 4633 0 261827 genus 1 3023 species 1 3023 1736674 0 Algibacter alginicilyticus 286104 0 3991 genus 2 2615021 0 3991 2 no rank species 1 1708 0 754409 Winogradskyella sp. PG-2 0 1936080 Winogradskyella sp. J14-2 1 species 2283 0 1649495 2931 genus 1 2622645 0 2931 1 no rank 1936081 0 Seonamhaeicola sp. S2-3 species 1 2931 0 216431 2059 genus 1 313588 0 Croceibacter atlanticus 1 species 2059 389486 0 2496 genus 1 2496 1 no rank 0 2648869 species 1 2496 0 1453352 Sediminicola sp. YIK13 genus 1 4999 143222 0 1 no rank 4999 0 2633436 species 1 4999 0 1729720 Salegentibacter sp. T436 genus 1 1805 0 178469 Arenibacter algicola 616991 0 1805 species 1 111500 1 0 Muricauda genus 3 5220 8 Muricauda lutaonensis 0 516051 2150 species 1 species 1 3062 0 111501 Muricauda ruestringensis 30009 435 9 genus Flavobacterium 0 237 1 1763534 0 Flavobacterium crassostreae 1 species 2315 4462 species 1 Flavobacterium columnare 0 996 4382 species 1 Flavobacterium commune 0 1306519 55197 0 Flavobacterium branchiophilum species 1 3197 2873 1 species Flavobacterium psychrophilum 0 96345 312277 0 Flavobacterium indicum 1 species 1331 Flavobacterium johnsoniae 0 986 9491 species 1 1523 1 species Flavobacterium gilvum 0 1492737 2491 1 genus 0 393005 Tamlana sp. UJ94 0 2069432 2491 species 1 0 153265 1 genus 2490 species 1 2490 0 101385 Aequorivita sublithincola Tenacibaculum 1 104267 0 9160 1 5 genus 1431 species 1 Tenacibaculum todarodis 1850252 0 2081 1 species Tenacibaculum dicentrarchi 0 669041 2268 species 1 Tenacibaculum maritimum 107401 0 3379 1 species Tenacibaculum jejuense 0 584609 Zobellia 112040 1 0 38 5025 genus 2 4987 species 1 Zobellia galactanivorans 63186 0 2 genus 1 604 358023 1 0 Lutibacter 603 1 species Lutibacter profundi 0 1622118 genus 5 19270 10 0 292691 1 Gramella 4596 species 1 Gramella sp. LPB0144 0 1913577 411153 0 Gramella forsetii species 1 6370 Gramella sp. SH35 0 2126553 3536 species 1 4758 1 species Gramella flava 0 1486245 61432 0 4069 no rank 2 Flavobacteriaceae bacterium UJ101 1150389 0 1323 species 1 531844 0 Flavobacteriaceae bacterium 3519-10 species 1 2746 genus 2 4432 1 0 417127 1 Zunongwangia species 1 4431 0 398743 Zunongwangia profunda Dokdonia 326319 1 0 5043 3 4 genus Dokdonia donghaensis 0 326320 3409 1 species 1631 2 no rank 0 2615033 1 species 1183 0 983548 Dokdonia sp. 4H-3-7-5 species 1 448 0 313590 Dokdonia sp. MED134 0 1204360 1970 genus 1 Siansivirga zeaxanthinifaciens 0 762954 1970 species 1 0 1209327 1644 1 genus species 1 1644 1803846 0 Flavivirga eckloniae 3194 1 genus 0 1518147 Wenyingzhuangia fucanilytica 0 1790137 3194 1 species 0 291183 genus 3 2008 0 1486034 Lacinutrix venerupis 1 species 429 no rank 2 1579 0 2647285 550 species 1 Lacinutrix sp. 5H-3-7-4 0 983544 2057808 0 Lacinutrix sp. Bg11-31 species 1 1029 0 1176327 735 genus 1 0 2636237 1 no rank 735 species 1 735 2094025 0 Aureitalea sp. RR4-38 0 52959 1 Polaribacter genus 6 117 8415 Polaribacter reichenbachii 0 996801 2235 species 1 3785 3 no rank 196858 0 1733 1 species Polaribacter sp. MED152 313598 0 1202 species 1 Polaribacter sp. BM10 1529069 0 0 2058137 Polaribacter sp. ALD11 species 1 850 1 species 2278 0 1774273 Polaribacter vadi 4 genus 1 5701 1 104264 0 Cellulophaga 3340 species 1 Cellulophaga lytica 979 0 1 species 1672 76594 0 Cellulophaga baltica 0 59600 Cellulophaga algicola species 1 688 Capnocytophaga 0 1016 1 72804 497 15 genus Capnocytophaga cynodegmi 0 28189 2067 1 species 3638 species 1 Capnocytophaga stomatis 0 1848904 28188 0 Capnocytophaga canimorsus species 1 2634 Capnocytophaga leadbetteri 0 327575 7724 species 1 6218 1 species Capnocytophaga sputigena 0 1019 0 1017 Capnocytophaga gingivalis species 1 13733 Capnocytophaga haemolytica 45243 0 5840 species 1 2640652 0 no rank 6 24386 1 species 1210 1945658 0 Capnocytophaga sp. H4358 species 1 5305 0 1705617 Capnocytophaga sp. oral taxon 323 209053 0 Capnocytophaga sp. ChDC OS43 1 species 3957 species 1 1373 1945657 0 Capnocytophaga sp. H2931 0 1316593 Capnocytophaga sp. oral taxon 864 species 1 4020 1316596 0 Capnocytophaga sp. oral taxon 878 1 species 8521 1018 0 Capnocytophaga ochracea 1 species 6067 3 genus 32 3584 0 225842 1 Formosa 3552 2 no rank 2644710 0 species 1 1500 0 1336795 Formosa sp. Hel3_A1_48 Formosa sp. Hel1_33_131 1336794 0 2052 species 1 1 genus 5006 0 252306 Robiginitalea biformata 0 252307 5006 1 species 0 252356 1 Maribacter 5 genus 3 12924 11230 no rank 3 0 2615042 313603 0 Maribacter sp. HTCC2170 1 species 2954 species 1 2037 0 1836467 Maribacter sp. T28 Maribacter sp. 1_2014MBL_MicDiv 1644130 0 6239 1 species 1691 species 1 Maribacter cobaltidurans 0 1178778 1 45771 class 14 Chitinophagia 1 1853228 0 13 order 187 45770 0 1853229 1 Chitinophagales 0 563835 1 Chitinophagaceae 12 family 127 45583 2 genus 4565 106 0 1 398041 Flavisolibacter 1 species 4459 0 1492898 Flavisolibacter tropicus 1769012 0 5657 1 genus 5657 1 no rank 0 2636138 0 1850526 Arachidicoccus sp. BS20 1 species 5657 8813 38 2 genus Niastella 0 1 354354 8775 1 species Niastella koreensis 0 354356 91 4883 3 genus Niabella 0 379899 1 446683 0 Niabella soli species 1 2281 Niabella ginsenosidivorans 1176587 0 2511 species 1 0 79328 16492 genus 2 6395 species 1 Chitinophagaceae bacterium 13 2029983 0 Chitinophaga pinensis 0 79329 10097 1 species 5046 genus 1 649460 0 Filimonas lacunae 477680 0 5046 species 1 45 82751 class 23 Sphingobacteriia 0 117747 1 200666 1 0 Sphingobacteriales 22 order 82706 15 82691 14 family 21 Sphingobacteriaceae 84566 1 0 0 28453 1 Sphingobacterium 6 genus 28144 39 0 2609468 22467 4 no rank species 1 5896 0 1933220 Sphingobacterium sp. B29 0 2003121 Sphingobacterium sp. G1-14 1 species 7679 1538644 0 Sphingobacterium sp. ML3W 1 species 3793 Sphingobacterium sp. 21 0 743722 5099 species 1 1010 0 Sphingobacterium mizutaii 1 species 5638 Solitalea 0 929509 1 7516 3 2 genus 7513 species 1 Solitalea canadensis 0 995 5 28404 6 genus Pedobacter 0 84567 1 1 species 8393 430522 0 Pedobacter steynii 5210 species 1 Pedobacter cryoconitis 0 188932 Pedobacter ginsengisoli 0 363852 4267 1 species 0 2628915 no rank 1 5984 5984 species 1 Pedobacter sp. PACM 27299 0 1727164 984 0 Pedobacter heparinus species 1 4545 1649482 0 1 genus 3940 151895 0 Pseudopedobacter saltans 1 species 3940 1 423349 0 Mucilaginibacter 4 genus 10358 19 1 species 3694 1550579 0 Mucilaginibacter gotjawali 2976 1 no rank 0 2617802 1 species 2976 0 1300914 Mucilaginibacter sp. PAMC 26640 Mucilaginibacter sp. BJC16-A31 0 1234841 3669 species 1 1 no rank 4315 0 84568 1 species 4315 0 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 3 3893 7 class Saprospiria 0 1937959 1 3890 6 order 0 1936988 1 89374 0 Saprospiraceae 3 family 1489 17 0 1 1007 Saprospira 2 genus 1472 37 0 1008 Saprospira grandis species 1 1435 2401 2 3 family Haliscomenobacteraceae 0 1937961 1 Haliscomenobacter 0 2349 1 2399 2 genus 2 2397 1 species Haliscomenobacter hydrossis 0 2350 1 phylum 1014 0 456828 1 genus 1014 456826 0 1 species 1014 456827 0 Candidatus Cloacimonas acidaminovorans phylum 7 2432 142182 0 class 7 2432 209 0 219685 1 Gemmatimonadetes 2223 20 6 order Gemmatimonadales 219686 1 0 2203 37 5 family Gemmatimonadaceae 0 1 219687 1 413 genus 2 Gemmatirosa 0 1 1706036 species 1 412 861299 0 Gemmatirosa kalamazoonesis 1753 2 genus 0 173479 851 1 species Gemmatimonas aurantiaca 173480 0 0 1379270 Gemmatimonas phototrophica species 1 902 phylum 2 2862 65842 0 204430 0 2 class 2862 218872 0 2862 order 2 Fibrobacteraceae 0 1 204431 2862 3 family 2 genus 1 2859 0 832 0 833 Fibrobacter succinogenes species 1 2859 0 203691 34889 phylum 55 34889 15 55 class Spirochaetia 0 203692 1 order 7 5 7025 0 1643686 1 Brachyspirales 5 7020 family 6 Brachyspiraceae 1 143786 0 Brachyspira 29521 1 0 7015 4 genus 5 2820 species 1 Brachyspira pilosicoli 52584 0 1120 1 species Brachyspira murdochii 0 84378 1965 species 1 Brachyspira hyodysenteriae 159 0 84377 0 Brachyspira intermedia 1 species 1106 order 8 3104 0 1643688 170 0 3104 8 family genus 2 149 1 1 338321 0 Turneriella 0 29510 Turneriella parva 1 species 148 171 1 0 Leptospira 6 genus 2955 1 414 1 species Leptospira borgpetersenii 174 0 Leptospira alstonii 28452 0 705 species 1 28183 0 Leptospira santarosai 1 species 140 1 species 1004 172 0 Leptospira biflexa Leptospira interrogans 173 0 691 1 species 0 136 1 Spirochaetales 39 order 177 24745 Spirochaetaceae 137 1 0 19464 107 22 family 1289 1 genus 1911556 0 1289 species 1 Sediminispirochaeta smaragdinae 55206 0 genus 2 540 2 0 1 1616789 Salinispira 1 species 538 1307761 0 Salinispira pacifica 1 399320 0 Sphaerochaeta 4 genus 2359 37 species 1 1140 0 1131703 Sphaerochaeta globosa 648 species 1 Sphaerochaeta coccoides 273376 0 0 1131707 Sphaerochaeta pleomorpha species 1 534 0 146 genus 2 2370 1679 1 species Spirochaeta africana 46355 0 1 species 691 0 154 Spirochaeta thermophila 12799 12 12 genus Treponema 1 157 0 744 1 species Treponema azotonutricium 0 150829 1 species 2427 0 221027 Treponema putidum species 1 612 0 158 Treponema denticola 2638727 0 1314 no rank 1 0 1539298 Treponema sp. OMZ 838 species 1 1314 0 215591 Treponema caldarium species 1 1119 Treponema pallidum 160 0 23 1 species 3057 1 species Treponema succinifaciens 0 167 1 species 21 0 53435 Treponema paraluiscuniculi 1 species 967 0 88058 Treponema primitia Treponema pedis 0 409322 970 species 1 1 species 1533 81028 0 Treponema brennaborense 5104 16 family 0 1643685 Borrelia 0 1 138 2 3437 8 genus 0 40834 Borrelia duttonii 1 species 1021 Borrelia miyamotoi 47466 0 912 species 1 140 0 Borrelia hermsii species 1 288 40 1 species Borrelia anserina 0 143 1023 species 1 Borrelia recurrentis 0 44449 Borrelia parkeri 141 0 35 species 1 1 species 116 0 142 Borrelia turicatae 8 genus 13 1667 64895 1 0 Borreliella Borreliella garinii 0 29519 115 1 species 1 species 28 1674146 0 Borrelia mayonii 0 62088 Borreliella valaisiana species 1 27 1 species 28 64897 0 Borreliella bissettii 664662 0 Borreliella bavariensis 1 species 57 29518 0 Borreliella afzelii 1 species 29 1370 species 1 Borreliella burgdorferi 139 0 32412 clade 76 1783257 0 2049 phylum 21 204428 0 Chlamydiia 0 1 204429 3 2049 class 21 0 1963360 order 6 446 family 1 116 92712 0 116 1 genus 34093 0 0 83561 Simkania negevensis species 1 116 family 3 306 1 0 92713 1 Parachlamydiaceae 1 genus 145 0 282132 Candidatus Protochlamydia naegleriophila 389348 0 145 species 1 160 1 genus 0 83551 species 1 160 83552 0 Parachlamydia acanthamoebae 2 family 24 92714 0 2 genus 24 1 71666 1 0 Waddlia Waddlia chondrophila 71667 0 23 1 species 2 1600 order 14 Chlamydiales 0 51291 1 1598 2 13 family Chlamydiaceae 809 1 0 0 1113537 12 no rank 1596 Chlamydia 0 1 810 1596 1 genus 12 0 813 Chlamydia trachomatis 1 species 124 1 species 121 0 83557 Chlamydia caviae 1457153 0 Chlamydia gallinacea species 1 132 Chlamydia avium 1457141 0 9 species 1 85991 0 Chlamydia pecorum species 1 76 species 1 88 0 83555 Chlamydia abortus Chlamydia felis 0 83556 719 species 1 83560 0 Chlamydia muridarum 1 species 49 83558 0 Chlamydia pneumoniae species 1 21 0 83559 Chlamydia suis species 1 13 83554 0 Chlamydia psittaci species 1 243 1050 phylum 2 0 134625 0 1921781 1050 class 2 0 1921782 1050 order 2 0 1921783 1050 2 family Kiritimatiella 0 1 1921784 1050 3 2 genus 1 species 1047 0 1307763 Kiritimatiella glycovorans 2240 phylum 3 0 256845 1313211 1 0 Lentisphaeria 3 class 5 2240 278082 1 0 Victivallales 2 order 2235 220 1674876 0 2015 1 no rank 0 2094242 Victivallales bacterium CCUG 44730 1 species 2015 0 1 74201 Verrucomicrobia 23 phylum 3 15720 1 518 5 class Methylacidiphilae 0 1 1955630 Methylacidiphilales 0 717963 1 19 517 4 order 717964 0 498 family 3 Methylacidiphilum 511745 1 0 1 498 3 genus 511746 0 Methylacidiphilum infernorum species 1 458 0 591154 Methylacidiphilum fumariolicum species 1 39 4567 2 class 5 Verrucomicrobiae 0 1 203494 48461 1 0 Verrucomicrobiales 4 order 2 4565 family 3 4 4563 1 1647988 0 Akkermansiaceae 239934 0 genus 2 4559 1 species 1159 1679444 0 Akkermansia glycaniphila 3400 species 1 Akkermansia muciniphila 0 239935 0 134549 245 class 1 0 134550 genus 1 245 2648876 0 245 1 no rank species 1 245 1704307 0 Candidatus Xiphinematobacter sp. Idaho Grape no rank 2 4808 0 417295 1637999 0 Verrucomicrobia bacterium IMCC26134 species 1 1346 0 2026799 Verrucomicrobia bacterium 1 species 3462 9 class 44 5579 0 1 414999 Opitutae 4373 22 6 order Opitutales 0 1 415000 Opitutaceae 1 134623 0 4351 45 family 5 1961799 0 981 genus 1 1838286 0 Lacunisphaera limnophila species 1 981 2195 1 no rank 278955 0 794903 0 Opitutaceae bacterium TAV5 1 species 2195 genus 2 2 1130 178440 1 0 Opitutus 1128 1 species Opitutus terrae 0 107709 0 415001 1 Puniceicoccales 2 order 1 1162 0 415002 family 1 1161 1 genus 1161 0 442430 1 species 1161 395922 0 Coraliomargarita akajimensis 203682 0 11353 27 phylum class 19 8592 106 1 203683 0 Planctomycetia 1 112 0 Planctomycetales order 9 283 2980 Planctomycetaceae 0 126 1 5 2697 family 8 Planctopirus 1 1649480 0 228 67 2 genus 0 120 Planctopirus limnophila 1 species 161 genus 3 3 1371 118 1 0 Planctomyces no rank 2 1368 2648843 0 Planctomyces sp. SH-PL14 1632864 0 527 species 1 Planctomyces sp. SH-PL62 1636152 0 841 species 1 611 genus 1 0 1649490 611 1 species Rubinisphaera brasiliensis 0 119 482 genus 1 1936111 0 Fuerstia marisgermanicae 0 1891926 482 1 species 2691356 0 order 4 2681 1 1763524 0 Isosphaeraceae 4 family 2 2681 0 466152 1 genus 634 Singulisphaera acidiphila 466153 0 634 1 species 1763521 0 480 genus 1 species 1 480 1387353 0 Paludisphaera borealis 1 genus 1565 0 127 128 0 Isosphaera pallida species 1 1565 3 order 2765 0 2691354 266 2 family 2691357 0 90 genus 1 265488 0 265606 0 Rhodopirellula baltica species 1 90 123 0 176 genus 1 176 species 1 Pirellula staleyi 0 125 family 1 2499 2691358 0 genus 1 2499 1676125 0 2499 species 1 Thermogutta terrifontis 1331910 0 0 2691355 60 order 2 1 60 2 family Gemmataceae 1914233 1 0 113 0 59 1 genus 59 1 no rank 2622970 0 1630693 0 Gemmata sp. SH-PL17 1 species 59 class 2 1184 0 2517206 3 1184 2 order Candidatus Brocadiales 1 1127829 0 0 1127830 1181 family 1 0 380738 genus 1 1181 species 1 1181 174633 0 Candidatus Kuenenia stuttgartiensis class 6 2 1577 666505 1 0 Phycisphaerae 0 666506 1 Phycisphaerales order 3 3 769 1 766 2 family Phycisphaeraceae 1 666507 0 0 666508 1 genus 765 Phycisphaera mikurensis 547188 0 765 1 species 0 2483366 806 2 order 2 family 806 0 2483367 genus 2 806 0 2483368 Phycisphaerae bacterium L21-RPul-D3 0 1940790 599 1 species 207 species 1 Phycisphaerae bacterium ST-PulAB-D4 0 1941349 40117 0 12 phylum 3184 203693 1 0 Nitrospira 12 class 1 3184 189778 1 0 Nitrospirales 11 order 3183 26 Nitrospiraceae 1 189779 0 3157 10 family 10 Nitrospira 1234 1 0 1 1913 5 genus Nitrospira moscoviensis 0 42253 419 species 1 Candidatus Nitrospira inopinata 1715989 0 305 1 species 165 1 species Nitrospira japonica 0 1325564 Nitrospira defluvii 330214 0 1023 species 1 genus 1 748 0 28261 Thermodesulfovibrio yellowstonii 28262 0 748 species 1 486 3 genus 0 179 0 261386 126 1 species group Leptospirillum ferriphilum 178606 0 126 1 species 0 655606 209 species group 1 Leptospirillum ferrooxidans 0 180 209 1 species 151 species group 1 0 261385 species 1 151 0 1660083 Leptospirillum sp. Group II 'CF-1' 413 phylum 3 0 1930617 1 1962850 0 Calditrichae class 3 413 1 0 1962852 2 order 412 0 1962854 family 2 412 genus 2 412 1 0 1 187144 Caldithrix 187145 0 Caldithrix abyssi species 1 411 508458 0 10 phylum 778 3 778 10 class Synergistia 0 1 649775 0 1 649776 Synergistales 9 order 7 775 649777 1 0 Synergistaceae 8 family 768 9 1 genus 72 336260 0 Thermovirga lienii 336261 0 72 species 1 0 1 81466 Aminobacterium 2 genus 160 1 Aminobacterium colombiense 81468 0 159 species 1 Cloacibacillus 0 508459 1 4 339 2 genus Cloacibacillus porcorum 1197717 0 335 1 species 140 genus 1 81461 0 Thermanaerovibrio acidaminovorans 0 81462 140 1 species 49894 0 48 1 genus species 1 48 0 97477 Acetomicrobium mobile phylum 34 13607 200918 0 0 1 188708 Thermotogae 34 class 13607 10 Thermotogales 2419 1 0 8652 2 order 24 8 family 2790 0 1643950 Thermosipho 0 1 2420 1 1171 genus 5 167 1 species Thermosipho melanesiensis 0 46541 2676525 0 746 2 no rank species 1 373 1437364 0 Thermosipho sp. 1070 Thermosipho sp. 1063 1462747 0 373 species 1 257 species 1 Thermosipho africanus 0 2421 1619 genus 3 0 2422 Fervidobacterium nodosum 2424 0 156 species 1 1 species 1018 93466 0 Fervidobacterium pennivorans 445 species 1 Fervidobacterium islandicum 2423 0 5860 15 family 188709 0 10 5157 11 genus Thermotoga 2335 1 0 no rank 4 1699 2631113 0 0 1157947 Thermotoga sp. Cell2 1 species 372 1 species 377 0 1157948 Thermotoga sp. 2812B 0 126740 Thermotoga sp. RQ2 1 species 385 species 1 565 0 126738 Thermotoga sp. RQ7 Thermotoga profunda 1508420 0 106 1 species Thermotoga petrophila 0 93929 818 1 species species 1 591 0 2337 Thermotoga neapolitana 0 93930 Thermotoga naphthophila 1 species 1185 0 2336 Thermotoga maritima 1 species 352 1508419 0 Thermotoga caldifontis species 1 396 703 genus 4 0 1643951 57487 0 Pseudothermotoga hypogea 1 species 69 38322 0 Pseudothermotoga elfii 1 species 463 Pseudothermotoga thermarum 119394 0 83 species 1 Pseudothermotoga lettingae 0 177758 88 1 species 3 order 1799 0 1643946 1799 family 3 1643948 0 76 1 genus 0 1184396 76 species 1 Mesotoga prima 0 1184387 651456 0 1723 2 genus Kosmotoga pacifica 0 1330330 770 1 species 651457 0 Kosmotoga olearia species 1 953 1643947 1 0 Petrotogales 6 order 3146 3 1643949 0 3143 5 family genus 3 1 1460 0 160798 1 Marinitoga Marinitoga piezophila 149715 0 696 species 1 763 1 no rank 2640159 0 1545835 0 Marinitoga sp. 1137 species 1 763 528 genus 1 0 28236 Petrotoga mobilis 0 69499 528 1 species 1 genus 1155 1511648 0 0 1006576 Defluviitoga tunisiensis 1 species 1155 1917 phylum 1365087 1148 1 1224 0 Proteobacteria 523 class 257958 1073 0 28211 1 Alphaproteobacteria Rhizobiales 0 356 1 1394 117381 198 order 6 family 1333 1 0 31993 1 Methylocystaceae Methylocystis 0 1 133 3 920 genus 3 495 species 1 Methylocystis bryophila 0 655015 422 1 no rank 0 2625913 0 187303 Methylocystis sp. SC2 species 1 422 Methylosinus 1 425 0 2 412 genus 2 410 species 1 Methylosinus trichosporium 426 0 Methylobacteriaceae 0 119045 1 10 15384 family 15 Microvirga 186650 1 0 1201 5 2 genus 1196 species 1 Microvirga ossetica 0 1882682 3011 genus 3 0 2282523 1 species 208 223967 0 Methylobacterium populi species 1 1016 0 29429 Methylobacterium zatmanii species 1 1787 0 408 Methylobacterium extorquens genus 9 422 11162 0 407 1 Methylobacterium 531 species 1 Methylobacterium aquaticum 0 270351 0 114616 Methylobacterium nodulans species 1 120 0 2615210 3 no rank 3375 Methylobacterium sp. 4-46 0 426117 656 1 species species 1 1045 0 925818 Methylobacterium sp. AMS5 1674 species 1 Methylobacterium sp. C1 0 1479019 1552 species 1 Methylobacterium oryzae 334852 0 0 31998 Methylobacterium radiotolerans 1 species 3597 418223 0 Methylobacterium phyllosphaerae 1 species 1565 15491 153 26 family Bradyrhizobiaceae 0 41294 1 1 40136 0 Oligotropha 2 genus 424 3 Oligotropha carboxidovorans 40137 0 421 species 1 1073 1 0 Rhodopseudomonas 2 genus 27 2573 Rhodopseudomonas palustris 0 1076 2546 1 species 6 2947 5 genus Bosea 85413 1 0 Bosea vaviloviae 1526658 0 1757 1 species 2653178 0 3 no rank 1184 0 1842539 Bosea sp. RAC05 1 species 425 170 species 1 Bosea sp. AS-1 2015316 0 589 species 1 Bosea sp. PAMC 26642 1792307 0 genus 3 2 765 0 1 911 Nitrobacter 0 913 Nitrobacter winogradskyi 1 species 680 912 0 Nitrobacter hamburgensis 1 species 83 2 genus 362 1 1649510 1 0 Variibacter Variibacter gotjawalensis 0 1333996 361 species 1 genus 11 193 8267 1 374 0 Bradyrhizobium Bradyrhizobium diazoefficiens 0 1355477 2372 1 species 0 2631580 6 no rank 3010 184 species 1 Bradyrhizobium sp. ORS 285 115808 0 376 0 Bradyrhizobium sp. 1 species 876 288000 0 Bradyrhizobium sp. BTAi1 species 1 694 707 species 1 Bradyrhizobium sp. SK17 0 2057741 Bradyrhizobium sp. CCGE-LA001 1223566 0 365 species 1 114615 0 Bradyrhizobium sp. ORS 278 1 species 184 species 1 1020 1274631 0 Bradyrhizobium icense 0 375 Bradyrhizobium japonicum species 1 1461 Bradyrhizobium oligotrophicum 0 44255 211 species 1 4 family 2057 5 2036754 1 0 Chelatococcaceae genus 3 2052 26 0 1 28209 Chelatococcus 2638111 0 1 no rank 1232 1232 1 species Chelatococcus sp. CO-6 0 1702325 species 1 794 444444 0 Chelatococcus daeguensis 1 772 0 Bartonellaceae 18 family 7038 4 7034 10 17 genus Bartonella 0 1 773 Bartonella ancashensis 1318743 0 269 1 species Bartonella australis 0 388640 77 1 species 61 species 1 Bartonella vinsonii 33047 0 803 1 species Bartonella henselae 0 38323 774 0 Bartonella bacilliformis 1 species 519 144 1 species Bartonella grahamii 0 33045 no rank 6 1726 0 2645622 36 species 1 Bartonella sp. A1379B 1933910 0 species 1 183 0 1933907 Bartonella sp. JB63 Bartonella sp. JB15 1933906 0 183 1 species 515256 0 Bartonella sp. 1-1C species 1 43 0 1933912 Bartonella sp. Raccoon60 species 1 34 1933904 0 Bartonella sp. WD16.2 species 1 1247 Bartonella tribocorum 0 85701 1234 1 species species 1 59 803 0 Bartonella quintana Bartonella apis 1686310 0 1951 1 species Bartonella clarridgeiae 0 56426 181 species 1 2657 35 7 family Xanthobacteraceae 335928 1 0 152053 1 0 Starkeya genus 2 63 440 1 species 377 0 921 Starkeya novella 2020 14 genus 2 Azorhizobium 6 1 0 7 0 Azorhizobium caulinodans 1 species 2006 0 1 279 Xanthobacter genus 2 4 162 280 0 Xanthobacter autotrophicus 1 species 158 20 family 7691 11 0 118882 1 Brucellaceae 693 1693 genus 14 Brucella 234 1 0 0 29459 Brucella melitensis 1 species 59 236 0 Brucella ovis 1 species 8 206 species 1 Brucella vulpis 0 981386 0 2632610 407 4 no rank Brucella sp. 09RB8471 1149952 0 58 species 1 0 1885919 Brucella sp. 141012304 species 1 131 Brucella sp. 09RB8910 1844051 0 215 1 species 1 species 3 0 1891098 Brucella sp. 2002734562 0 36855 Brucella canis 1 species 93 Brucella microti 0 444163 12 1 species Brucella abortus 0 235 12 species 1 85 species 1 Brucella pinnipedialis 0 120576 Brucella ceti 120577 0 105 species 1 13 species 1 Brucella suis 29461 0 Ochrobactrum 0 1 528 5987 211 genus 5 Ochrobactrum pituitosum 0 571256 1518 species 1 Ochrobactrum pseudogrignonense 419475 0 1070 1 species 1 species 2022 271865 0 Ochrobactrum sp. A44 1166 1 species Ochrobactrum anthropi 529 0 family 49 515 39596 82115 1 0 Rhizobiaceae 0 323620 247 genus 1 1 no rank 247 0 2643062 879274 0 Shinella sp. HZN7 1 species 247 no rank 9 8678 0 227292 0 106591 genus 2 2175 1332 species 1 Ensifer sojae 716925 0 843 1 species Ensifer adhaerens 0 106592 Sinorhizobium 28105 1 0 6503 19 genus 7 1 species 2044 382 0 Sinorhizobium meliloti 1 species 1139 0 110321 Sinorhizobium medicae species 1 1163 0 194963 Sinorhizobium americanum no rank 2 450 0 2613772 371 species 1 Sinorhizobium sp. RAC02 1842534 0 Sinorhizobium sp. CCBAU 05631 0 794846 79 1 species 1688 1 species group 0 663276 1688 species 1 Sinorhizobium fredii 380 0 34019 1 0 Liberibacter genus 6 2 1109 367 species 1 Candidatus Liberibacter americanus 0 309868 1 species 57 1273132 0 Liberibacter crescens Candidatus Liberibacter asiaticus 34021 0 70 1 species 39 1 species Candidatus Liberibacter africanus 34020 0 556287 0 Candidatus Liberibacter solanacearum species 1 574 0 227290 29047 no rank 32 genus 23 1383 20529 1 379 0 Rhizobium Rhizobium etli 0 29449 2317 1 species 17 no rank 8099 2613769 0 0 2020312 Rhizobium sp. CIAT894 1 species 151 1703962 0 Rhizobium sp. N1341 species 1 1 Rhizobium sp. N1314 1703961 0 12 1 species Rhizobium sp. IE4771 1301032 0 676 species 1 1703969 0 Rhizobium sp. N324 species 1 435 1051 species 1 Rhizobium sp. S41 0 1869170 Rhizobium sp. 10195 0 2028343 1150 1 species 1914541 0 Rhizobium sp. Y9 species 1 885 333 species 1 Rhizobium sp. NXC14 1981173 0 1 species 12 0 1703966 Rhizobium sp. N731 species 1 15 2020313 0 Rhizobium sp. TAL182 709 1 species Rhizobium sp. IRBG74 424182 0 0 1703967 Rhizobium sp. N741 species 1 1 Rhizobium sp. Kim5 2020311 0 660 species 1 242 1 species Rhizobium sp. ACO-34A 0 1571470 0 1125847 Rhizobium sp. NT-26 species 1 444 species 1 1322 0 2048897 Rhizobium sp. NXC24 Rhizobium gallicum 0 56730 2006 1 species 1732 1 species Rhizobium phaseoli 0 396 384 0 Rhizobium leguminosarum species 1 3442 Rhizobium tropici 0 398 1550 1 species Neorhizobium 0 1 1525371 470 1 2 genus 399 0 Neorhizobium galegae 1 species 469 0 357 1 Agrobacterium 7 genus 176 8048 359 0 Agrobacterium rhizogenes species 1 1180 1 species 1511 373 0 Agrobacterium vitis species group 2 4443 1183400 0 0 358 Agrobacterium tumefaciens species 1 2995 1 species 1448 0 1176649 Agrobacterium fabrum 0 2632611 2 no rank 738 species 1 469 0 861208 Agrobacterium sp. H13-3 269 1 species Agrobacterium sp. RAC06 0 1842536 no rank 6 1064 0 119042 2 genus 11 221 1484898 1 0 Methyloceanibacter 1 species 210 0 1384459 Methyloceanibacter caenitepidi genus 2 11 396 1 1572860 0 Hartmannibacter 1 species 385 0 1482074 Hartmannibacter diazotrophicus 2 genus 16 447 1 1734920 0 Pseudorhodoplanes 1 species 431 1235591 0 Pseudorhodoplanes sinuspersici Hyphomicrobiaceae 45401 1 0 7923 484 16 family Rhodoplanes 0 29407 1 424 2 2 genus no rank 1 422 2619116 0 674703 0 Rhodoplanes sp. Z2-YC6860 1 species 422 59282 0 genus 1 863 Blastochloris viridis 0 1079 863 species 1 224 1 genus 1082930 0 531813 0 Pelagibacterium halotolerans species 1 224 1 genus 76 1068 0 76 species 1 Rhodomicrobium vannielii 1069 0 Filomicrobium 0 1 119044 460 3 2 genus species 1 457 0 1608628 Candidatus Filomicrobium marinum 1 46913 0 Devosia genus 4 19 2726 no rank 3 2707 0 196773 1051 species 1 Devosia sp. A16 0 1736675 Devosia sp. I507 2083786 0 1248 species 1 0 1643450 Devosia sp. H5989 1 species 408 2666 1 genus 4 Hyphomicrobium 0 81 1 0 2619925 567 no rank 1 Hyphomicrobium sp. MC1 0 717785 567 1 species 1 species 1090 53399 0 Hyphomicrobium denitrificans 1427356 0 Hyphomicrobium nitrativorans species 1 1008 Phyllobacteriaceae 0 1 69277 12508 86 19 family 0 28100 genus 1 683 1867719 0 Phyllobacterium zundukense 1 species 683 4 832 2 genus Hoeflea 274591 1 0 828 no rank 1 2614931 0 828 species 1 Hoeflea sp. IMCC20628 0 1620421 Nitratireductor 245876 1 0 2242 6 2 genus 472175 0 Nitratireductor basaltis 1 species 2236 1013 24 2 genus Aminobacter 31988 1 0 Aminobacter aminovorans 83263 0 989 species 1 449972 1 0 Chelativorans 2 genus 1441 2 1439 1 no rank 2643807 0 266779 0 Chelativorans sp. BNC1 species 1 1439 9 genus 6211 45 0 68287 1 Mesorhizobium 430 1 species Mesorhizobium japonicum 2066070 0 1091 species 1 Mesorhizobium amorphae 71433 0 739 1 species Mesorhizobium opportunistum 0 593909 1 species 466 381 0 Mesorhizobium loti 0 39645 Mesorhizobium ciceri 1 species 1233 Mesorhizobium australicum 0 536018 323 species 1 1380 1 no rank 0 325217 Mesorhizobium sp. WSM1497 0 278153 1380 species 1 504 species 1 Mesorhizobium sp. B7 1670800 0 5 2361 7 family Aurantimonadaceae 0 255475 1 Martelella 1 293088 0 269 2044 4 genus 705 species 1 Martelella mediterranea 293089 0 0 2629616 no rank 1 326 0 686597 Martelella sp. AD-3 species 1 326 744 species 1 Martelella endophytica 0 1486262 11 312 genus 2 Aureimonas 414371 1 0 301 no rank 1 0 2615206 301 1 species Aureimonas sp. AU20 1349819 0 family 2 235 0 119043 0 256616 1 Parvibaculum 2 genus 235 2 species 1 233 256618 0 Parvibaculum lavamentivorans 0 45404 2 family 649 286 genus 1 0 120652 species 1 286 199596 0 Methylocella silvestris genus 1 363 532 0 363 1 species Beijerinckia indica 0 533 204457 1 0 Sphingomonadales order 81 399 38592 Erythrobacteraceae 0 1 335929 297 9574 22 family genus 4 1523 4 0 1 361177 Altererythrobacter Altererythrobacter atlanticus 0 1267766 326 1 species 361183 0 Altererythrobacter epoxidivorans 1 species 400 Altererythrobacter ishigakiensis 476157 0 793 1 species 0 1855416 3240 genus 2 1197 species 1 Erythrobacter flavus 0 192812 2043 species 1 Erythrobacter seohaensis 0 266951 209 1 genus 2800682 0 Altererythrobacter namhicola 0 645517 209 species 1 2800788 0 6 no rank 2672 Porphyrobacter 1111 1 0 1 966 3 genus 2 no rank 965 0 2683265 Porphyrobacter sp. LM 6 0 1896196 812 1 species 1 species 153 2023229 0 Porphyrobacter HT-58-2 1041 1 0 Erythrobacter genus 3 1706 39 Porphyrobacter neustonensis 0 1112 158 1 species 0 39960 Erythrobacter litoralis 1 species 1509 2800685 0 164 genus 1 0 543877 Altererythrobacter marensis 1 species 164 425 genus 2 0 2800681 Erythrobacter atlanticus 1648404 0 151 species 1 502682 0 Erythrobacter gangjinensis species 1 274 2 364 3 genus Croceicoccus 1295327 1 0 Croceicoccus marinus 0 450378 176 1 species species 1 186 1348774 0 Croceicoccus naphthovorans 2 genus 680 2800686 0 494 1 species Altererythrobacter dongtanensis 692370 0 species 1 186 0 1982042 Altererythrobacter mangrovi 129 28619 family 58 Sphingomonadaceae 41297 1 0 198 1 2 genus Rhizorhabdus 1649486 1 0 Rhizorhabdus dicambivorans 1850238 0 197 species 1 Sphingomonas 0 1 13687 58 5731 15 genus 0 397260 Sphingomonas sanxanigenens species 1 114 0 93064 Sphingomonas koreensis 1 species 594 0 196159 3784 no rank 6 Sphingomonas sp. NIC1 1961362 0 103 1 species 136 1 species Sphingomonas sp. KC8 1030157 0 0 1327635 Sphingomonas sp. Cra20 species 1 1723 1390395 0 Sphingomonas sp. LK11 1 species 114 655 species 1 Sphingomonas sp. MM-1 0 745310 Sphingomonas sp. LM7 0 1938607 1053 species 1 188 1 species Sphingomonas melonis 152682 0 0 1560345 Sphingomonas panacis species 1 196 Sphingomonas taxi 1549858 0 297 1 species 0 1609977 Sphingomonas hengshuiensis species 1 90 2 species 206 410 1 160791 0 Sphingomonas wittichii Sphingomonas sp. DC-6 0 1283312 204 1 strain 0 2685927 genus 1 434 1921510 0 Sphingomonas sp. JJ-A5 1 species 434 2 genus 45 108 1 72173 0 Citromicrobium 63 1 no rank 2630544 0 1 species 63 1634516 0 Citromicrobium sp. JL477 5825 93 10 genus Sphingopyxis 0 165697 1 0 2614943 no rank 4 3273 Sphingopyxis sp. MG 1866325 0 464 1 species 1 species 618 0 1357916 Sphingopyxis sp. QXT-31 Sphingopyxis sp. LPB0140 0 1913578 49 1 species 292913 0 Sphingopyxis sp. 113P3 1 species 2142 189 1 species Sphingopyxis alaskensis 117207 0 Sphingopyxis macrogoltabida 33050 0 1426 1 species 33052 0 Sphingopyxis terrae species 1 63 267128 0 Sphingopyxis granuli 1 species 458 0 1515612 Sphingopyxis fribergensis species 1 323 15 genus 9246 167 1 165695 0 Sphingobium 458 species 1 Sphingobium herbicidovorans 0 76947 332055 0 Sphingobium indicum species 1 769 0 120107 Sphingobium cloacae 1 species 146 332056 0 Sphingobium japonicum species 1 690 1332080 0 Sphingobium baderi 1 species 1624 species 1 472 13690 0 Sphingobium yanoikuyae 0 1673076 Sphingobium hydrophobicum species 1 184 3518 no rank 6 2611147 0 Sphingobium sp. TKS 1315974 0 96 1 species 1 species 453 627192 0 Sphingobium sp. SYK-6 1956 1 species Sphingobium sp. RAC03 1843368 0 161 species 1 Sphingobium sp. YBL2 0 484429 Sphingobium sp. EP60837 0 1855519 479 species 1 Sphingobium sp. MI1205 0 407020 373 1 species Sphingobium chlorophenolicum 46429 0 1218 1 species genus 5 8 1289 1 165696 0 Novosphingobium 244 species 1 Novosphingobium pentaromativorans 205844 0 695 1 species Novosphingobium resinovorum 158500 0 0 48935 Novosphingobium aromaticivorans species 1 261 no rank 1 81 0 2644732 Novosphingobium sp. PP1Y 0 702113 81 species 1 Sphingorhabdus 0 1434046 1 1831 56 3 genus no rank 2 1775 2614947 0 1 species 1544 1806885 0 Sphingorhabdus sp. M41 231 species 1 Sphingorhabdus sp. YGSMI21 0 2077182 778 genus 1 2709685 0 species 1 778 266812 0 Sphingorhabdus flavimaris 150203 0 217 1 genus 1 no rank 217 0 2626550 1 species 217 0 1842535 Blastomonas sp. RAC04 2833 1 genus 2 Zymomonas 0 1 541 Zymomonas mobilis 0 542 2832 1 species 10 1315 2 order Magnetococcales 1191478 1 0 1191479 0 1 family 1305 1305 genus 1 0 162171 1 species 1305 0 1124597 Magnetococcus marinus 0 2800060 3628 order 6 3628 74 family 6 Hyphomonadaceae 1 69657 0 Hirschia 0 2723 1 1887 1 2 genus Hirschia baltica 2724 0 1886 species 1 1667 4 3 genus Hyphomonas 85 1 0 372 1 species Hyphomonas neptunium 0 81032 2630699 0 1291 1 no rank 1 species 1291 0 1906738 Hyphomonas sp. Mor2 Pelagibacterales 0 1 54526 1 1904 6 order genus 1 403 0 2045213 Candidatus Fonsibacter ubiquis 1925548 0 403 1 species 0 1655514 family 4 1500 1655516 0 1205 2 no rank alpha proteobacterium HIMB59 0 744985 433 species 1 alpha proteobacterium HIMB5 859653 0 772 1 species genus 2 295 0 198251 1 no rank 153 2647897 0 1002672 0 Candidatus Pelagibacter sp. IMCC9063 species 1 153 species 1 142 0 198252 Candidatus Pelagibacter ubique 10450 47 20 order Caulobacterales 204458 1 0 Caulobacteraceae 0 76892 1 10403 143 19 family 76890 1 0 Asticcacaulis genus 2 4 726 1 species 722 0 78587 Asticcacaulis excentricus 7 genus 2391 58 41275 1 0 Brevundimonas species 1 111 74313 0 Brevundimonas subvibrioides 3 no rank 1207 2622653 0 1938605 0 Brevundimonas sp. LM2 1 species 243 1 species 142 1532555 0 Brevundimonas sp. DS20 Brevundimonas sp. GW460-12-10-14-LB2 0 1827469 822 species 1 760 species 1 Brevundimonas naejangsanensis 588932 0 255 species 1 Brevundimonas vesicularis 0 41276 1052 no rank 1 81440 0 1052 species 1 Caulobacteraceae bacterium OTSz_A_272 0 1759059 0 75 1 Caulobacter 6 genus 102 6024 0 155892 Caulobacter vibrioides 1 species 2395 1157 1 species Caulobacter henricii 69395 0 Caulobacter segnis 0 88688 659 species 1 Caulobacter mirabilis 0 69666 151 1 species no rank 1 1560 0 2648921 366602 0 Caulobacter sp. K31 1 species 1560 1 20 0 Phenylobacterium genus 2 1 67 0 284016 Phenylobacterium zucineum 1 species 66 Rhodobacterales 204455 1 0 573 38981 order 79 78 family 38408 438 0 31989 1 Rhodobacteraceae 74032 0 genus 1 811 species 1 811 74033 0 Antarctobacter heliothermus 1 1097466 0 Defluviimonas 2 genus 186 2 0 1335048 Defluviimonas alba 1 species 184 Sulfitobacter 1 60136 0 2 1280 3 genus 196795 0 1051 no rank 1 1051 species 1 Sulfitobacter sp. AM1-D1 0 1917485 0 1402135 Sulfitobacter pseudonitzschiae species 1 227 1 265 0 Paracoccus 9 genus 4418 163 1081 1 species Paracoccus contaminans 1945662 0 Paracoccus aminovorans 0 34004 691 species 1 1077935 0 Paracoccus zhejiangensis species 1 641 Paracoccus yeei 147645 0 549 1 species no rank 1 138 0 246570 138 species 1 Paracoccus sp. BM15 0 1529068 0 266 Paracoccus denitrificans species 1 487 159 species 1 Paracoccus aminophilus 34003 0 509 1 species Paracoccus sp. CBA4604 2065379 0 0 119541 306 1 genus Rhodobaca barguzinensis 441209 0 306 1 species 1490 144 genus 5 Celeribacter 875170 1 0 1208324 0 Celeribacter indicus species 1 472 species 1 694 1411902 0 Celeribacter manganoxidans 1 species 109 0 1758178 Celeribacter ethanolicus 71 species 1 Celeribacter marinus 0 1397108 genus 4 3730 86 0 1 478070 Labrenzia 0 187304 Labrenzia aggregata species 1 981 2663 no rank 2 0 2648686 1674922 0 Labrenzia sp. CP4 species 1 660 2021862 0 Labrenzia sp. VG12 species 1 2003 1698 1 genus 0 2211641 Loktanella vestfoldensis 245188 0 1698 1 species 0 53945 3 genus 1016 128 1 species Octadecabacter temperatus 0 1458307 0 53946 Octadecabacter arcticus species 1 202 686 1 species Octadecabacter antarcticus 0 1217908 Ruegeria 1 97050 0 2053 2 genus 3 0 2625375 1 no rank 240 species 1 240 292414 0 Ruegeria sp. TM1040 0 89184 Ruegeria pomeroyi 1 species 1811 206 genus 1 58842 0 206 1 no rank 0 2624628 species 1 206 2009329 0 Sagittula sp. P11 no rank 2 1767 0 58840 1056 species 1 Rhodobacteraceae bacterium QY30 2033435 0 Rhodobacteraceae bacterium 0 1904441 711 species 1 0 299261 1360 genus 1 Tateyamaria omphalii 299262 0 1360 species 1 188905 0 genus 1 710 1 no rank 710 2645469 0 290400 0 Jannaschia sp. CCS1 1 species 710 genus 2 1 725 0 191028 1 Leisingera 724 1 species Leisingera methylohalidivorans 133924 0 111 1 genus 0 159345 159346 0 Roseibacterium elongatum species 1 111 genus 2 1042 3 0 1 360528 Pelagibaca 1039 1 species Pelagibaca abyssi 0 1250539 0 309512 325 genus 1 1 species 325 215813 0 Dinoroseobacter shibae 0 1649279 1022 genus 1 species 1 1022 379347 0 Ruegeria mobilis 367771 1 0 Marinovum 2 genus 419 4 42444 0 Marinovum algicola species 1 415 genus 1 415 1284657 0 Planktomarina temperata 0 1284658 415 1 species 1759396 0 287 1 genus 2622455 0 287 no rank 1 1920883 0 Marivivens sp. JLT3646 species 1 287 genus 5 3 2951 0 1060 1 Rhodobacter 0 196779 1104 2 no rank Rhodobacter sp. CZR27 0 2033869 188 species 1 916 1 species Rhodobacter sp. LPB0142 1850250 0 171 1 species Rhodobacter capsulatus 0 1061 1673 species 1 Rhodobacter sphaeroides 1063 0 259 1 genus 2 Confluentimicrobium 0 1 1609958 0 2643318 no rank 1 258 species 1 258 1609966 0 Confluentimicrobium sp. EMB200-NS6 977 2 genus 2433 0 2434 0 Roseobacter denitrificans 1 species 338 639 species 1 Roseobacter litoralis 42443 0 285107 0 genus 1 372 1 species 372 0 1915078 Thioclava nitratireducens genus 1 812 0 74030 Roseovarius mucosus 0 215743 812 1 species 1108 genus 2 263377 0 0 1229727 Thiobacimonas profunda species 1 359 2640570 0 749 1 no rank species 1 749 0 1792508 Yangia sp. CCB-MM3 436357 0 Thalassococcus 1 genus 4 Phaeobacter 1 302485 0 16 2876 genus 5 773 species 1 Phaeobacter gallaeciensis 0 60890 1844006 0 Phaeobacter porticola species 1 72 Phaeobacter piscinae 0 1580596 590 1 species 1425 1 species Phaeobacter inhibens 0 221822 1579315 0 65 1 genus 65 1 species Halocynthiibacter arcticus 0 1579316 Ketogulonicigenium 0 1 92944 1 592 genus 3 Ketogulonicigenium robustum 92947 0 76 1 species 515 1 species Ketogulonicigenium vulgare 92945 0 2 620 genus 2 Pannonibacter 0 227873 1 618 species 1 Pannonibacter phragmitetus 0 121719 genus 4 1957 569 0 34008 1 Rhodovulum Rhodovulum sulfidophilum 35806 0 486 species 1 2 no rank 902 2631432 0 0 1564506 Rhodovulum sp. P5 species 1 139 Rhodovulum sp. MB263 0 308754 763 species 1 82117 0 2162 no rank 6 162 clade 1 0 62654 0 767891 162 1 genus 767892 0 Candidatus Puniceispirillum marinum 1 species 162 1 genus 340 213485 0 340 1 species Micavibrio aeruginosavorus 349221 0 genus 2 1501 3 0 1 1632780 Phreatobacter 1498 species 1 Phreatobacter sp. S-12 1868589 0 genus 2 12 159 0 1 991903 Polymorphum 991904 0 Polymorphum gilvum 1 species 147 0 204441 1 Rhodospirillales order 63 511 29390 15238 454 32 family Acetobacteraceae 0 1 433 0 1602345 773 genus 1 0 1510841 Parasaccharibacter apium species 1 773 89583 0 genus 1 595 0 33996 Gluconacetobacter diazotrophicus species 1 595 Kozakia 0 1 153497 60 295 genus 2 species 1 235 0 153496 Kozakia baliensis Acetobacter 0 1 434 59 4803 8 genus 1633874 0 Acetobacter oryzifermentans species 1 150 151157 0 420 1 subgenus 0 435 Acetobacter aceti species 1 420 Acetobacter persici 1076596 0 519 1 species 630 species 1 Acetobacter senegalensis 446692 0 1 species 260 0 65959 Acetobacter pomorum species 1 2621 0 438 Acetobacter pasteurianus 144 species 1 Acetobacter tropicalis 0 104102 0 1 441 Gluconobacter genus 3 3819 41 0 318683 Gluconobacter albidus species 1 736 Gluconobacter oxydans 0 442 3042 1 species Neoasaia 0 1 320496 4 1124 genus 2 Neoasaia chiangmaiensis 0 320497 1120 1 species 91914 0 118 genus 1 species 1 118 91915 0 Asaia bogorensis 5 genus 5 879 1 1434011 0 Komagataeibacter 1 species 176 265960 0 Komagataeibacter nataicola species 1 78 0 1177712 Komagataeibacter medellinensis species 1 94 0 33995 Komagataeibacter europaeus species 1 526 28448 0 Komagataeibacter xylinus 0 522 1 Acidiphilium 3 genus 395 11 Acidiphilium multivorum 62140 0 218 1 species species 1 166 524 0 Acidiphilium cryptum 1036 65 genus 3 Roseomonas 0 1 125216 species 1 500 0 257708 Roseomonas gilardii 471 1 no rank 0 2617492 471 1 species Roseomonas sp. FDAARGOS_362 2018065 0 2 genus 947 11 1 364409 0 Granulibacter 1 species 936 0 364410 Granulibacter bethesdensis family 30 13641 196 1 41295 0 Rhodospirillaceae 1081 1 0 Rhodospirillum genus 3 8 610 1 species 272 1085 0 Rhodospirillum rubrum 330 species 1 Rhodospirillum centenum 0 34018 1263978 0 108 genus 1 108 1 species Candidatus Endolissoclinum faulkneri 1263979 0 0 168934 1 Thalassospira genus 3 1979 4 220697 0 Thalassospira xiamenensis species 1 1284 Thalassospira sp. CSC3H3 2048283 0 691 species 1 1 1543704 0 Niveispirillum 2 genus 6 527 0 1612173 Niveispirillum cyanobacteriorum species 1 521 Magnetospira 1182780 1 0 564 129 2 genus 435 no rank 1 0 2685734 0 1288970 Magnetospira sp. QH-2 species 1 435 3412 74 5 genus Magnetospirillum 13134 1 0 0 84159 Magnetospirillum magneticum 1 species 1086 no rank 2 558 0 2617991 123 1 species Magnetospirillum sp. ME-1 1639348 0 1663591 0 Magnetospirillum sp. XM-1 1 species 435 species 1 1694 0 55518 Magnetospirillum gryphiswaldense Haematospirillum 0 1804663 1 160 2 2 genus 0 1549855 Haematospirillum jordaniae 1 species 158 171436 1 0 Tistrella 2 genus 557 160 1 species 397 0 171437 Tistrella mobilis 3996 115 genus 5 Azospirillum 0 1 191 0 192 Azospirillum brasilense 1 species 1355 274 species 1 Azospirillum thiophilum 0 528244 0 193 Azospirillum lipoferum 1 species 1101 1151 species 1 Azospirillum humicireducens 1226968 0 1254 2 genus 2 Nitrospirillum 1 1543705 0 Nitrospirillum amazonense 28077 0 1252 1 species 3 278 2 genus Pararhodospirillum 0 1612157 1 275 1 species Pararhodospirillum photometricum 0 1084 0 1 1921002 Holosporales 6 order 2621 118 Caedimonadaceae 0 1 2100208 1 1526 family 3 Candidatus Nucleicultrix 1 1509243 0 1 1525 2 genus 1524 species 1 Candidatus Nucleicultrix amoebiphila 1509244 0 44746 0 family 1 836 no rank 1 836 204454 0 836 1 species endosymbiont of Acanthamoeba sp. UWC8 0 86106 0 1777752 family 1 141 genus 1 141 1521255 0 1 species 141 0 91604 Candidatus Paracaedibacter acanthamoebae 0 255473 1860 3 order 1 1860 family 3 Parvularculaceae 255474 1 0 Parvularcula 1 208215 0 1859 9 genus 2 Parvularcula bermudensis 0 208216 1850 1 species 0 2800059 1351 order 2 0 2800061 2 family 1351 2 genus 1351 4 1 74317 0 Maricaulis Maricaulis maris 0 74318 1347 1 species Rickettsiales 1 766 0 136 7250 order 50 0 1 775 Rickettsiaceae family 27 1 1969 24 tribe 1778 33988 0 1 genus 752 0 69474 784 0 Orientia tsutsugamushi 1 species 752 genus 23 86 1026 0 1 780 Rickettsia 0 114277 536 17 species group 0 42862 Rickettsia felis 1 species 54 27 species 1 Rickettsia slovaca 0 35794 14 1 species Rickettsia montanensis 33991 0 9 species 1 Rickettsia massiliae 0 35791 Rickettsia conorii 781 0 25 1 species Rickettsia africae 35788 0 28 species 1 Rickettsia australis 0 787 150 species 1 Rickettsia rhipicephali 0 33992 19 1 species Rickettsia parkeri 35792 0 12 1 species Rickettsia peacockii 47589 0 17 1 species 1105106 0 Rickettsia philipii 1 species 5 1 species 6 226665 0 Rickettsia heilongjiangensis 1 species 122 0 786 Rickettsia akari 6 1 species Rickettsia japonica 0 35790 3 1 species Rickettsia rickettsii 0 783 0 109232 Rickettsia monacensis 1 species 24 Rickettsia amblyommatis 0 33989 15 species 1 0 114295 1 no rank 141 species 1 141 0 337479 Rickettsia endosymbiont of Bemisia tabaci 0 1129742 species group 2 180 species 1 139 33990 0 Rickettsia bellii species 1 41 0 788 Rickettsia canadensis species group 2 83 0 114292 Rickettsia typhi 0 785 42 1 species Rickettsia prowazekii 782 0 41 1 species genus 2 1 190 1 2115980 0 Candidatus Phycorickettsia Candidatus Phycorickettsia trachydisci 2115978 0 189 1 species 4528 family 19 0 942 5 genus 1420 943 0 106181 0 329 no rank 1 Ehrlichia sp. HF 0 391036 329 species 1 1091 species group 4 0 106178 944 0 Ehrlichia canis species 1 50 1 species 52 0 779 Ehrlichia ruminantium 527 1 species Ehrlichia muris 35795 0 945 0 Ehrlichia chaffeensis species 1 462 3 genus 611 0 768 769 0 Anaplasma centrale species 1 256 1 species 214 0 770 Anaplasma marginale species group 1 141 106179 0 species 1 141 948 0 Anaplasma phagocytophilum 952 0 tribe 7 1746 1746 genus 7 953 0 2640676 0 no rank 7 1746 Wolbachia endosymbiont of Drosophila simulans 77038 0 579 1 species Wolbachia endosymbiont of Brugia malayi 80849 0 18 species 1 species 1 139 0 246273 Wolbachia endosymbiont of Cimex lectularius 9 1 species Wolbachia endosymbiont of Onchocerca volvulus 77551 0 10 1 species Wolbachia endosymbiont of Onchocerca ochengi 100901 0 Wolbachia sp. wRi 66084 0 319 species 1 672 1 species Wolbachia endosymbiont of Drosophila melanogaster 0 163164 6 751 4 genus Neorickettsia 33993 1 0 0 33994 Neorickettsia helminthoeca 1 species 24 951 0 Neorickettsia sennetsu 1 species 439 species 1 282 950 0 Neorickettsia risticii Candidatus Midichloriaceae 0 1 1328881 45 1 family 2 44 1 genus 0 411566 44 1 species Candidatus Midichloria mitochondrii 234827 0 572 no rank 1 1699067 0 0 1528098 Rickettsiales bacterium Ac37b 1 species 572 class 7 2934 1 1807140 1 0 Acidithiobacillia Acidithiobacillales 0 1 225057 2933 36 order 6 2897 3 family 5 Acidithiobacillaceae 0 225058 1 0 119977 1 Acidithiobacillus 4 genus 2894 1 893 species 1 Acidithiobacillus caldus 0 33059 Acidithiobacillus ferrivorans 160808 0 706 1 species species 1 1294 920 0 Acidithiobacillus ferrooxidans Oligoflexia 1553900 1 0 4663 429 8 class 1 2024979 0 Bacteriovoracales 3 order 558 25 0 1652132 family 1 235 0 1652133 genus 1 235 Halobacteriovorax marinus 0 97084 235 1 species 263369 0 family 1 298 0 146784 1 genus 298 960 0 Bacteriovorax stolpii species 1 298 Bdellovibrionales 213481 1 0 3676 16 order 4 3 family 3 3660 1 213483 0 Bdellovibrionaceae 3657 2 genus 0 958 Bdellovibrio exovorus 453816 0 1115 species 1 959 0 Bdellovibrio bacteriovorus species 1 2542 0 68525 98526 subphylum 182 0 1 28221 Deltaproteobacteria 113 class 484 59925 23 order 16412 751 0 69541 1 Desulfuromonadales 1 213421 0 Desulfuromonadaceae 9 family 20 3359 genus 5 2387 3 0 18 1 Pelobacter 1071 1 species Pelobacter propionicus 0 29543 182 1 no rank 2620299 0 182 species 1 Pelobacter sp. SFB93 0 1842532 19 0 Pelobacter carbinolicus 1 species 926 0 29542 Pelobacter acetylenicus species 1 205 3 genus 6 952 1 890 0 Desulfuromonas Desulfuromonas soudanensis 0 1603606 345 species 1 601 1 no rank 0 2614637 Desulfuromonas sp. DDH964 1823759 0 601 1 species 13 family 58 12302 0 213422 1 Geobacteraceae 498 1 genus 0 392332 498 1 species Geoalkalibacter subterraneus 0 483547 0 1 28231 Geobacter 11 genus 11746 33 455 species 1 Geobacter anodireducens 1340425 0 species 1 508 0 345632 Geobacter pickeringii species 1 1192 0 351604 Geobacter uraniireducens 1159 1 species Geobacter metallireducens 28232 0 Geobacter bemidjiensis 0 225194 268 1 species 1290 1 species Geobacter lovleyi 313985 0 1 species 289 1203471 0 Geobacter daltonii 5967 2 no rank 2627627 0 Geobacter sp. M21 443144 0 2832 1 species 3135 1 species Geobacter sp. M18 443143 0 Geobacter sulfurreducens 0 35554 585 species 1 213115 1 0 Desulfovibrionales order 25 380 11810 380 2 family 3 Desulfohalobiaceae 213117 1 0 0 45662 1 Desulfohalobium 2 genus 378 1 377 1 species Desulfohalobium retbaense 45663 0 0 194924 1 Desulfovibrionaceae family 17 9549 61 Pseudodesulfovibrio 0 1 2035811 44 1939 genus 4 709 species 1 Pseudodesulfovibrio indicus 1716143 0 397 species 1 Pseudodesulfovibrio profundus 57320 0 789 1 species Pseudodesulfovibrio aespoeensis 182210 0 0 2794998 1501 genus 1 0 880 Desulfovibrio salexigens species 1 1501 Desulfovibrio 0 872 1 5486 20 9 genus 0 1725232 Candidatus Desulfovibrio trichonymphae species 1 400 species 1 422 0 44742 Desulfovibrio fairfieldensis 0 876 Desulfovibrio desulfuricans species 1 1228 1346 species 1 Desulfovibrio piger 0 901 Desulfovibrio magneticus 184917 0 345 1 species Desulfovibrio alaskensis 0 58180 1004 1 species species 1 551 0 881 Desulfovibrio vulgaris 0 2593640 170 no rank 1 Desulfovibrio sp. G11 0 631220 170 1 species 0 41707 genus 1 391 1 species 391 0 29546 Lawsonia intracellularis 0 2582840 1 genus 171 873 0 Desulfovibrio africanus species 1 171 213116 1 0 Desulfomicrobiaceae 4 family 44 1501 Desulfomicrobium 0 1 898 1457 7 genus 3 575 1 species Desulfomicrobium orale 0 132132 899 0 Desulfomicrobium baculatum species 1 875 16 order 1 6311 0 213118 1 Desulfobacterales 8 family 2 2546 0 1 213121 Desulfobulbaceae Desulfobulbus 0 1 893 586 20 genus 2 species 1 566 0 1986146 Desulfobulbus sp. ORNL 0 53318 364 1 genus species 1 364 65555 0 Desulfocapsa sulfexigens 433 1 2 genus Desulfurivibrio 427922 1 0 1 species 432 0 427923 Desulfurivibrio alkaliphilus genus 2 1161 3 0 1 109168 Desulfotalea 84980 0 Desulfotalea psychrophila species 1 1158 3764 3 7 family Desulfobacteraceae 1 213119 0 0 218207 326 genus 1 Desulfatibacillum alkenivorans 0 259354 326 1 species 0 28222 1 genus 324 28223 0 Desulfobacula toluolica species 1 324 2295 1 0 Desulfobacterium 2 genus 740 3 Desulfobacterium autotrophicum 2296 0 737 1 species 896 0 2371 2 genus 643 species 1 Desulfococcus oleovorans 181663 0 Desulfococcus multivorans 897 0 1728 1 species 213113 0 3 order 1408 Desulfurellaceae 117942 1 0 1408 26 family 3 114 genus 1 0 33001 1 species 114 33002 0 Desulfurella acetivorans 84404 0 genus 1 1268 Hippea maritima 0 84405 1268 species 1 0 1 453227 Desulfarculales order 3 330 3 Desulfarculaceae 0 1 453228 1 327 family 2 genus 1 326 453229 0 326 1 species Desulfarculus baarsii 453230 0 0 1 29 Myxococcales 34 order 20799 450 24 suborder 15967 0 80811 530 family 2 0 1524213 0 1524214 1 Vulgatibacter 2 genus 2 530 Vulgatibacter incomptus 1391653 0 528 1 species 9 family 66 9486 0 31 1 Myxococcaceae 2614 6 3 genus Corallococcus 1 83461 0 0 184914 Corallococcus coralloides species 1 1058 1 species 1550 0 35 Myxococcus macrosporus 32 1 0 Myxococcus genus 5 264 6806 1 species 372 1297742 0 Myxococcus hansupus 1 species 839 34 0 Myxococcus xanthus 958 species 1 Myxococcus stipitatus 83455 0 Myxococcus fulvus 33 0 4373 1 species family 8 12 3739 1 39 0 Archangiaceae genus 2 6 1062 0 1 47 Archangium 48 0 Archangium gephyra 1 species 1056 genus 2 1263 1 0 1 40 Stigmatella Stigmatella aurantiaca 0 41 1262 1 species Melittangium 1 44 0 1033 2 genus 2 1031 species 1 Melittangium boletus 83453 0 42 0 1 genus 369 43 0 Cystobacter fuscus 1 species 369 5 family 3 2212 0 1 1524215 Anaeromyxobacteraceae Anaeromyxobacter 0 161492 1 2209 218 genus 4 848 2 no rank 0 2620896 Anaeromyxobacter sp. Fw109-5 404589 0 483 species 1 447217 0 Anaeromyxobacter sp. K 1 species 365 1 species 1143 0 161493 Anaeromyxobacter dehalogenans suborder 2 2049 0 224462 2049 2 family 0 224464 Haliangium 0 162027 1 2049 4 genus 2 species 1 2045 0 80816 Haliangium ochraceum suborder 7 2333 80812 0 Polyangiaceae 49 1 0 1880 7 5 family 1 39643 0 Sorangium 2 genus 20 1307 56 0 Sorangium cellulosum 1 species 1287 Chondromyces 1 50 0 566 7 genus 2 Chondromyces crocatus 0 52 559 species 1 family 2 453 0 1055686 453 12 genus 2 Sandaracinus 1055688 1 0 species 1 441 0 927083 Sandaracinus amylolyticus Syntrophobacterales 213462 1 0 2371 21 order 8 0 213468 1964 4 family 1 genus 187 60892 0 187 species 1 Desulfobacca acetoxidans 60893 0 2 genus 216 2 0 1 43773 Syntrophus species 1 214 316277 0 Syntrophus aciditrophicus genus 1 1561 0 2357 1561 species 1 Desulfomonile tiedjei 0 2358 386 2 3 family Syntrophobacteraceae 1 213465 0 Syntrophobacter 0 29526 1 2 384 genus 2 Syntrophobacter fumaroxidans 0 119484 382 1 species 69 class 38601 270 0 29547 1 Epsilonproteobacteria 0 235899 3108 4 order 2795691 0 2 family 983 2 genus 4 983 0 1 269258 Nitratiruptor 979 1 no rank 0 2624044 979 species 1 Nitratiruptor sp. SB155-2 387092 0 224467 0 2 family 2125 2 genus 2 2125 191291 1 0 Nautilia 0 244787 Nautilia profundicola species 1 2123 Campylobacterales 1 213849 0 35223 444 64 order 15 family 6 7878 1 72293 0 Helicobacteraceae 1 209 0 Helicobacter 12 genus 6123 4 1 species 655 0 217 Helicobacter mustelae species 1 3051 210 0 Helicobacter pylori 0 2593540 804 1 no rank 804 species 1 Helicobacter sp. MIT 01-6242 0 222136 117 1 species Helicobacter cinaedi 0 213 1 species 36 0 214 Helicobacter felis Helicobacter cetorum 0 138563 194 1 species 226 1 species Helicobacter hepaticus 32025 0 1 species 415 1591088 0 Helicobacter himalayensis species 1 27 212 0 Helicobacter acinonychis 1 species 51 76936 0 Helicobacter typhlonius 543 1 species Helicobacter bilis 37372 0 1749 2 2 genus Wolinella 0 1 843 species 1 1747 0 844 Wolinella succinogenes 1289 family 4 2771471 0 0 286130 448 genus 1 1 species 448 0 148813 Sulfuricurvum kujiense 1 841 genus 3 Sulfurimonas 0 202746 1 1 species 170 202747 0 Sulfurimonas autotrophica Sulfurimonas denitrificans 39766 0 670 species 1 3004 4 family 0 2771472 1 265570 0 Sulfurovum 3 genus 2483 14 2646778 0 2029 1 no rank 2029 species 1 Sulfurovum sp. NBC37-1 0 387093 0 206403 Sulfurovum lithotrophicum 1 species 440 1 genus 521 0 269260 521 1 species Nitratifractor salsuginis 269261 0 family 40 22608 807 0 72294 1 Campylobacteraceae 2321108 0 1462 no rank 4 1 genus 617 0 2321187 species 1 617 0 1850254 Arcobacter sp. LPB0137 no rank 1 414 2321207 0 944547 0 Arcobacter sp. L 1 species 414 431 2 genus 28196 0 190 1 species Arcobacter butzleri 28197 0 0 28199 Arcobacter nitrofigilis species 1 241 1 194 0 Campylobacter genus 26 155 13579 0 1965231 Campylobacter pinnipediorum 1 species 1090 1 species 669 0 201 Campylobacter lari Campylobacter concisus 199 0 1133 1 species 0 497724 Campylobacter subantarcticus 1 species 613 Campylobacter hominis 76517 0 102 1 species 488546 0 Campylobacter peloridis 1 species 426 Campylobacter volucris 1031542 0 83 1 species 471 4 no rank 0 2593542 1 species 59 0 1660076 Campylobacter sp. RM12175 1500960 0 Campylobacter sp. RM16704 1 species 163 0 1660074 Campylobacter sp. RM8964 1 species 80 1660073 0 Campylobacter sp. RM6137 1 species 169 0 195 Campylobacter coli species 1 2094 Campylobacter helveticus 28898 0 125 species 1 198 0 Campylobacter hyointestinalis 1 species 394 Campylobacter insulaenigrae 0 260714 735 1 species Campylobacter avium 0 522485 45 1 species 316 species 1 Campylobacter lanienae 0 75658 97 1 species Campylobacter gracilis 824 0 species 1 235 374106 0 Campylobacter cuniculorum Campylobacter curvus 200 0 704 1 species 827 0 Campylobacter ureolyticus 1 species 516 0 197 Campylobacter jejuni 1 species 2342 Campylobacter iguaniorum 0 1244531 333 species 1 Campylobacter sputorum 0 206 284 1 species Campylobacter fetus 0 196 617 1 species Sulfurospirillum 1 57665 0 43 6760 genus 9 65553 0 Sulfurospirillum deleyianum 1 species 494 0 194424 Sulfurospirillum halorespirans 1 species 256 3112 no rank 3 2618290 0 1338 species 1 Sulfurospirillum sp. JPD-1 0 220622 0 1581011 Sulfurospirillum sp. UCH001 species 1 1312 Sulfurospirillum sp. SL2-1 0 1986224 462 species 1 1 species 57 366522 0 Sulfurospirillum cavolei Sulfurospirillum multivorans 0 66821 2301 1 species 497 1 species Sulfurospirillum barnesii 0 44674 1 1236 0 Gammaproteobacteria class 849 769645 2077 order 29 4 25224 0 1 135625 Pasteurellales Pasteurellaceae 0 1 712 25220 1640 family 28 476528 0 genus 1 1972 Bibersteinia trehalosi 0 47735 1972 1 species 6 genus 5408 10 1 724 0 Haemophilus 1 no rank 692 0 2609962 712310 0 Haemophilus sp. oral taxon 036 species 1 692 species 1 215 0 249188 Haemophilus pittmaniae 727 0 Haemophilus influenzae species 1 2763 Haemophilus parainfluenzae 729 0 1490 1 species [Haemophilus] ducreyi 730 0 238 1 species 2630 1 genus 3 Pasteurella 0 745 1 1 species 2061 0 747 Pasteurella multocida 568 1 species Pasteurella dagmatis 0 754 1280 4 genus 2 Histophilus 0 1 214906 1276 1 species Histophilus somni 731 0 4 genus 2833 4 75984 1 0 Mannheimia 1 no rank 237 0 2645054 237 1 species Mannheimia sp. USDA-ARS-USMARC-1261 1432056 0 1866 species 1 Mannheimia haemolytica 75985 0 species 1 726 85404 0 Mannheimia varigena 5 genus 4147 37 713 1 0 Actinobacillus 1 species 988 0 718 Actinobacillus equuli 716 0 Actinobacillus suis 1 species 1777 0 67854 Actinobacillus succinogenes species 1 223 Actinobacillus pleuropneumoniae 0 715 1122 1 species 0 416916 1425 2 genus species 1 926 0 714 Aggregatibacter actinomycetemcomitans 732 0 Aggregatibacter aphrophilus 1 species 499 0 155493 1 Gallibacterium 2 genus 2449 2 2447 1 species Gallibacterium anatis 0 750 0 2094023 1182 1 genus 738 0 Glaesserella parasuis species 1 1182 254 1 genus 0 697331 254 1 species [Mannheimia] succiniciproducens 157673 0 238 order 1992 313857 0 91347 1 Enterobacterales 37 family 30 37719 1 1903411 0 Yersiniaceae 7 1 genus Rouxiella 1565532 0 929812 0 753 1 genus 929813 0 Gibbsiella quercinecans species 1 753 genus 4 62 3144 0 34037 1 Rahnella no rank 2 2512 2635087 0 741091 0 Rahnella sp. Y9602 species 1 567 1 species 1945 0 1805933 Rouxiella sp. ERMR1:05 0 34038 Rahnella aquatilis 1 species 570 0 1745211 1 genus 364 Chania multitudinisentens 0 1639108 364 species 1 Serratia 613 1 0 13481 474 16 genus species 1 250 0 61652 Serratia rubidaea species 1 2195 615 0 Serratia marcescens Serratia fonticola 47917 0 2357 species 1 Serratia plymuthica 82996 0 1291 species 1 2051 1 species Serratia proteamaculans 28151 0 2808 8 no rank 0 2647522 2033438 0 Serratia sp. MYb239 1 species 282 species 1 225 488142 0 Serratia sp. SCBI 1 species 195 1758196 0 Serratia sp. SSNIH1 639 1 species Serratia sp. AS13 768493 0 0 671990 Serratia sp. FGI94 1 species 160 Serratia sp. ATCC 39006 104623 0 433 1 species 0 768490 Serratia sp. AS12 1 species 639 0 1327989 Serratia sp. FS14 species 1 235 0 61651 Serratia ficaria species 1 494 0 614 Serratia liquefaciens species 1 1561 Yersinia 1 629 0 19940 959 genus 13 Yersinia rohdei 0 29485 191 1 species Yersinia enterocolitica 630 0 5820 species 1 2653513 0 1546 1 no rank 1546 1 species Yersinia sp. FDAARGOS_228 1839800 0 Yersinia aleksiciae 263819 0 640 species 1 0 29486 Yersinia ruckeri 1 species 1105 1548 1 species Yersinia intermedia 631 0 29483 0 Yersinia aldovae species 1 674 3354 3 species group 0 1649845 Yersinia similis 0 367190 830 species 1 633 0 Yersinia pseudotuberculosis species 1 1254 Yersinia pestis 0 632 1270 species 1 389 1 species Yersinia kristensenii 28152 0 3714 1 species Yersinia frederiksenii 29484 0 0 1 543 Enterobacteriaceae family 116 1632 205663 Enterobacter 0 547 1 36252 1232 genus 22 2608935 0 8029 no rank 9 Enterobacter sp. SA187 1914861 0 1121 species 1 species 1 1796 2051905 0 Enterobacter sp. CRENT-193 species 1 751 0 1977566 Enterobacter sp. Crenshaw Enterobacter sp. 638 399742 0 858 1 species 111 1 species Enterobacter sp. E20 1560339 0 species 1 993 0 1692238 Enterobacter sp. FY-07 1868135 0 Enterobacter sp. HK169 species 1 118 Enterobacter sp. R4-368 0 1166130 1320 species 1 Enterobacter sp. ODB01 1827481 0 961 species 1 species group 12 26991 0 354276 0 2757714 2530 3 no rank species 1 166 0 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2027919 0 Enterobacter cloacae complex bacterium 1 species 1000 Enterobacter cloacae complex sp. ECNIH7 0 1915310 1364 1 species 3 species 9790 7138 0 1 158836 Enterobacter hormaechei 1 subspecies 1362 0 1296536 Enterobacter xiangfangensis subspecies 1 1290 1812934 0 Enterobacter cloacae complex 'Hoffmann cluster III' 0 550 Enterobacter cloacae 1 species 9629 616 1 species Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1812935 0 299767 Enterobacter ludwigii 1 species 310 844 species 1 Enterobacter kobei 208224 0 0 69218 Enterobacter cancerogenus species 1 1040 0 61645 Enterobacter asburiae species 1 2232 genus 3 3866 24 0 160674 1 Raoultella Raoultella ornithinolytica 0 54291 3033 1 species 1 species 809 0 575 Raoultella planticola 5 genus 1171 60424 0 561 1 Escherichia species 1 2840 564 0 Escherichia fergusonii species 1 994 0 1499973 Escherichia marmotae 5045 1 species Escherichia albertii 0 208962 50374 species 1 Escherichia coli 0 562 12 2784 genus 5 Kosakonia 0 1 1330547 0 208223 Kosakonia cowanii species 1 1299 660 species 1 Kosakonia sacchari 0 1158459 Kosakonia oryzae 497725 0 438 1 species Kosakonia radicincitans 0 283686 375 1 species genus 1 171 401618 0 species 1 171 0 401619 Candidatus Riesia pediculicola genus 1 703 0 579 703 1 species Kluyvera intermedia 61648 0 Cronobacter 0 1 413496 110 7044 8 genus 1267 species 1 Cronobacter universalis 535744 0 1 species 776 0 413501 Cronobacter muytjensii 0 413497 Cronobacter dublinensis species 1 523 Cronobacter sakazakii 0 28141 1063 species 1 1895 1 species Cronobacter turicensis 0 413502 species 1 899 413503 0 Cronobacter malonaticus Cronobacter condimenti 1163710 0 511 species 1 1 409304 0 Candidatus Ishikawaella genus 2 1 222 Candidatus Ishikawaella capsulata 168169 0 221 1 species genus 14 19820 818 0 544 1 Citrobacter species 1 1298 67824 0 Citrobacter farmeri 0 1344959 10735 7 species group 1 species 4692 546 0 Citrobacter freundii species 1 311 2077149 0 Citrobacter freundii complex sp. CFNIH9 256 1 species Citrobacter freundii complex sp. CFNIH3 2077147 0 2922 species 1 Citrobacter werkmanii 67827 0 921 species 1 Citrobacter freundii complex sp. CFNIH4 0 2077148 2066049 0 Citrobacter freundii complex sp. CFNIH2 species 1 1199 434 1 species Citrobacter braakii 0 57706 Citrobacter koseri 0 545 1001 1 species 0 35703 Citrobacter amalonaticus species 1 2928 2644389 0 no rank 2 2000 species 1 980 0 1920110 Citrobacter sp. CFNIH10 Citrobacter sp. FDAARGOS_156 1702170 0 1020 species 1 1040 1 species Citrobacter rodentium 0 67825 2672 18 no rank 0 191675 84563 0 clade 18 2672 146507 0 224 clade 4 Candidatus Hamiltonella 0 1 568987 19 88 genus 2 1 species 69 138072 0 Candidatus Hamiltonella defensa 1 species 65 0 1199245 secondary endosymbiont of Ctenarytaina eucalypti 71 species 1 secondary endosymbiont of Heteropsylla cubana 134287 0 824 1 genus 0 1682492 Candidatus Tachikawaea gelatinosa 0 1410383 824 species 1 1 clade 28 199891 0 1 species 28 0 1835721 secondary endosymbiont of Trabutina mannipara 1906661 0 1 genus 135 Candidatus Gullanella endobia 1070130 0 135 species 1 clade 7 945 84564 0 945 1 7 genus Candidatus Blochmannia 0 1 203804 696 no rank 2 0 711328 17 species 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 1505596 679 1 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 0 0 203907 Candidatus Blochmannia floridanus 1 species 17 species 1 158 251535 0 Candidatus Blochmannia vafer 41 1 species Candidatus Blochmannia pennsylvanicus 0 101534 Candidatus Blochmannia chromaiodes 251542 0 32 species 1 10 63 2 genus Candidatus Hoaglandella 1 1906659 0 53 1 species Candidatus Hoaglandella endobia 0 1778263 1906660 0 38 genus 1 Candidatus Mikella endobia 1778264 0 38 1 species 0 1906657 1 genus 415 1778262 0 Candidatus Doolittlea endobia 1 species 415 36866 0 4661 no rank 5 Enterobacteriaceae bacterium ENNIH1 0 2066051 451 species 1 498 1 species Plautia stali symbiont 0 891974 0 693444 Enterobacteriaceae bacterium strain FGI 57 species 1 2244 Enterobacteriaceae bacterium ENNIH3 0 1920128 862 species 1 1 species 606 1920109 0 Enterobacteriaceae bacterium ENNIH2 genus 2 4739 4 158483 1 0 Cedecea Cedecea neteri 158822 0 4735 species 1 1335483 0 genus 1 867 1 species 867 0 563 Shimwellia blattae 570 1 0 Klebsiella genus 10 31396 930 1425 1 species Klebsiella quasipneumoniae 0 1463165 2 no rank 1862 0 2608929 species 1 541 0 1905288 Klebsiella sp. LTGPAF-6F 1321 1 species Klebsiella sp. M5al 0 1934254 573 0 Klebsiella pneumoniae species 1 12866 species 1 1201 0 548 Klebsiella aerogenes Klebsiella variicola 0 244366 4009 1 species Klebsiella michiganensis 0 1134687 2166 species 1 2820 1 species Klebsiella quasivariicola 0 2026240 4117 species 1 Klebsiella oxytoca 571 0 3 genus 10886 53 0 590 1 Salmonella 1 species 10484 28901 0 Salmonella enterica 54736 0 Salmonella bongori 1 species 349 4 genus 3623 294 83654 1 0 Leclercia 2801 2 no rank 2627398 0 1920114 0 Leclercia sp. LSNIH1 species 1 2098 species 1 703 0 1920116 Leclercia sp. LSNIH3 528 species 1 Leclercia adecarboxylata 0 83655 0 1048757 40 1 genus 1048758 0 Candidatus Moranella endobia 1 species 40 Lelliottia 1 1330545 0 6 4122 genus 4 1903 1 species Lelliottia amnigena 0 61646 1335 species 1 Lelliottia jeotgali 0 1907578 69220 0 Lelliottia nimipressuralis 1 species 878 1330546 0 2 genus 973 1 species 441 0 61647 Pluralibacter gergoviae 1334193 0 [Enterobacter] lignolyticus species 1 532 1300 8766 genus 4 Shigella 0 620 1 3161 1 no rank 0 2629414 Shigella sp. PAMC 28760 1813821 0 3161 1 species Shigella dysenteriae 0 622 2509 1 species 0 623 Shigella flexneri species 1 1796 Erwiniaceae 0 1903409 1 24947 25 family 27 2 genus 1881 0 2100764 1076 1 species Pantoea gaviniae 0 665914 805 species 1 Pantoea calida 665913 0 1002 5 genus 2 Tatumella 0 1 82986 1 species 997 53336 0 Tatumella citrea 1 893 genus 2 Buchnera 0 32199 1 1 species 892 9 0 Buchnera aphidicola 1 genus 572 51228 0 Wigglesworthia glossinidia 0 51229 572 species 1 174 7981 8 genus Erwinia 1 551 0 0 552 Erwinia amylovora species 1 1795 429 species 1 Erwinia tasmaniensis 338565 0 30 1 species Candidatus Erwinia sp. ErCipseudotaxifoliae 0 1922217 2622719 0 1 no rank 1694 Erwinia sp. Ejp617 0 215689 1694 1 species 0 1619313 Erwinia gerundensis species 1 1211 182337 0 Erwinia billingiae species 1 906 1742 1 species Erwinia pyrifoliae 0 79967 760 12593 genus 11 Pantoea 0 1 53335 1 species group 1888 0 1654067 1888 1 species Pantoea agglomerans 0 549 2100 1 species Pantoea vagans 470934 0 Pantoea stewartii 66269 0 1722 species 1 1891675 0 Pantoea alhagi species 1 1108 no rank 3 2781 0 2630326 618 species 1 Pantoea sp. At-9b 0 592316 Pantoea sp. PSNIH1 1484158 0 392 species 1 1 species 1771 0 1484157 Pantoea sp. PSNIH2 0 1235990 Candidatus Pantoea carbekii species 1 401 Pantoea rwandensis 1076550 0 777 1 species 553 0 Pantoea ananatis species 1 1056 1609 no rank 2 451511 0 2 genus 1609 10 0 702 1 Plesiomonas species 1 1599 0 703 Plesiomonas shigelloides 73 14515 21 family Morganellaceae 0 1 1903414 1 586 0 Providencia genus 4 10 3080 species 1 1304 0 126385 Providencia alcalifaciens 587 0 Providencia rettgeri 1 species 1083 683 1 species Providencia stuartii 588 0 38 2200 genus 6 Xenorhabdus 0 626 1 483 1 species Xenorhabdus hominickii 0 351679 139 1 species Xenorhabdus doucetiae 0 351671 Xenorhabdus poinarii 0 40577 677 species 1 Xenorhabdus nematophila 0 628 455 1 species 0 40576 Xenorhabdus bovienii species 1 408 Morganella 581 1 0 75 1481 genus 2 Morganella morganii 0 582 1406 1 species genus 3 70 2204 0 583 1 Proteus Proteus vulgaris 585 0 733 1 species species 1 1401 584 0 Proteus mirabilis 637 0 genus 1 21 634113 0 Arsenophonus symbiont of Lipoptena fortisetosa 1 species 21 Photorhabdus 29487 1 0 5456 16 4 genus Photorhabdus temperata 0 574560 1971 1 species Photorhabdus asymbiotica 0 291112 2599 1 species 870 1 species Photorhabdus luminescens 0 29488 Pectobacteriaceae 1 1903410 0 16447 8 20 family genus 2 21 525 71655 1 0 Brenneria 504 1 species Brenneria goodwinii 0 1109412 9603 100 6 genus Pectobacterium 0 1 122277 1292 1 species Pectobacterium atrosepticum 29471 0 Pectobacterium wasabiae 55208 0 1268 1 species Pectobacterium parmentieri 0 1905730 891 species 1 species 1 3027 0 554 Pectobacterium carotovorum species 1 3025 2042057 0 Pectobacterium polaris 660 15 genus 5 Sodalis 1 84565 0 0 63612 Sodalis glossinidius species 1 79 1 species 223 0 1486991 Candidatus Sodalis pierantonius 0 1239307 Sodalis praecaptivus 1 species 265 78 species 1 Sodalis endosymbiont of Henestaris halophilus 0 1929246 1 204037 0 Dickeya genus 6 54 5651 Dickeya dadantii 0 204038 942 species 1 1 species 820 204039 0 Dickeya dianthicola 899 species 1 Dickeya solani 0 1089444 527 1 species Dickeya fangzhongdai 1778540 0 1 species 2409 0 204042 Dickeya zeae 1903416 0 1021 1 family 1021 1 genus 0 82984 1021 1 species Pragia fontium 82985 0 1903412 0 13 family 9944 Hafnia 0 568 1 24 2806 genus 3 1563 1 species Hafnia alvei 0 569 0 2621980 1 no rank 1219 species 1 1219 1848580 0 Hafnia sp. CBA7124 6812 152 genus 8 Edwardsiella 0 635 1 1263550 0 Edwardsiella piscicida species 1 335 Edwardsiella tarda 636 0 2236 1 species 361 species 1 Edwardsiella hoshinae 93378 0 2 no rank 2059 0 2676541 965 species 1 Edwardsiella sp. LADL05-105 1650654 0 1 species 1094 0 1578828 Edwardsiella sp. EA181011 Edwardsiella anguillarum 1821960 0 966 species 1 1 species 703 0 67780 Edwardsiella ictaluri 326 76 genus 2 Obesumbacterium 0 82982 1 82983 0 Obesumbacterium proteus 1 species 250 Vibrionales 135623 1 0 57806 3 order 43 57803 888 42 family Vibrionaceae 1 641 0 0 2042066 844 genus 1 species 1 844 1755811 0 Paraphotobacterium marinum 662 1 0 Vibrio 30 genus 45622 668 Vibrio coralliilyticus 190893 0 1547 1 species 672 0 Vibrio vulnificus species 1 3613 252 species 1 Vibrio qinghaiensis 2025808 0 Vibrio breoganii 553239 0 874 1 species 3893 species 1 Vibrio cholerae 0 666 2 no rank 3171 0 2614977 Vibrio sp. 2521-89 0 2014742 1219 species 1 1952 1 species Vibrio sp. EJY3 1116375 0 212663 0 Vibrio tasmaniensis species 1 102 species 1 1797 687 0 Vibrio gazogenes species 1 1597 0 674 Vibrio mimicus 293 1 species Vibrio tritonius 0 1435069 Vibrio fluvialis 0 676 1296 species 1 Vibrio scophthalmi 45658 0 963 1 species 0 717610 10 species group 20550 190895 0 Vibrio rotiferianus species 1 901 3200 1 species Vibrio harveyi 0 669 3686 species subgroup 2 2315253 0 Vibrio diabolicus 0 50719 2099 species 1 0 150340 Vibrio antiquarius species 1 1587 663 0 Vibrio alginolyticus 1 species 1690 2898 species 1 Vibrio natriegens 691 0 3340 species 1 Vibrio parahaemolyticus 670 0 424 species 1 Vibrio owensii 0 696485 Vibrio jasicida 766224 0 646 species 1 680 0 Vibrio campbellii species 1 3765 1 species 1714 0 29494 Vibrio furnissii Vibrio anguillarum 0 55601 524 species 1 Vibrio nigripulchritudo 28173 0 1061 species 1 Vibrio hyugaensis 0 1534743 474 1 species 1070 species 1 Vibrio tapetis 0 52443 1 species group 163 1891919 0 Vibrio tubiashii 0 29498 163 species 1 3095 1 genus 4 Aliivibrio 1 511678 0 species 1 924 40269 0 Aliivibrio salmonicida 309 1 species Aliivibrio wodanis 80852 0 1861 1 species Aliivibrio fischeri 0 668 Photobacterium 657 1 0 6963 2 4 genus Photobacterium gaetbulicola 0 1295392 2072 1 species Photobacterium profundum 0 74109 1543 species 1 Photobacterium damselae 0 38293 3346 1 species Grimontia 0 246861 1 1 391 2 genus 673 0 Grimontia hollisae species 1 390 19 order 1 10286 0 1 118969 Legionellales 552 3 family 0 118968 0 776 470 2 genus no rank 1 5 0 2676648 5 1 species Coxiella endosymbiont of Amblyomma americanum 0 325775 Coxiella burnetii 777 0 465 species 1 82 1 no rank 0 134284 Coxiella-like endosymbiont 0 1592897 82 1 species 9733 1 15 family Legionellaceae 1 444 0 0 1 445 Legionella genus 12 22 9305 species 1 1387 28087 0 Legionella sainthelensi Legionella waltersii 66969 0 100 species 1 1 species 224 0 452 Legionella spiritensis Legionella hackeliae 449 0 429 species 1 1867846 0 Legionella clemsonensis 1 species 51 89 1 species Legionella lansingensis 0 45067 5369 1 species Legionella pneumophila 0 446 29423 0 Legionella oakridgensis species 1 259 Legionella endosymbiont of Polyplax serrata 2005262 0 520 species 1 Legionella longbeachae 450 0 643 1 species 1 species 212 0 96230 Legionella fallonii 427 1 genus 2 Tatlockia 0 1 465 Tatlockia micdadei 0 451 426 1 species Alteromonadales 1 135622 0 763 75770 order 103 Alteromonadaceae 0 1 72275 50 25924 27 family 0 261825 616 genus 1 Agarivorans gilvus 680279 0 616 species 1 genus 10 8942 25 0 2742 1 Marinobacter 1874317 0 Marinobacter salinus 1 species 1831 0 330734 Marinobacter psychrophilus species 1 319 species 1 1721 1420917 0 Marinobacter salarius 0 1420916 Marinobacter similis species 1 1411 2743 0 Marinobacter hydrocarbonoclasticus species 1 1259 1485 no rank 3 0 83889 551 species 1 Marinobacter sp. CP1 0 1671721 1 species 267 490759 0 Marinobacter sp. BSs20148 0 1749259 Marinobacter sp. LQ44 species 1 667 species 1 891 1033846 0 Marinobacter adhaerens Alteromonas 226 1 0 256 11655 genus 10 1665 1 species Alteromonas stellipolaris 233316 0 3129 1 species Alteromonas macleodii 0 28108 Alteromonas mediterranea 0 314275 1955 species 1 3184 3 no rank 0 2614992 Alteromonas sp. MB-3u-76 0 2058133 561 1 species 1620 1 species Alteromonas sp. RW2A1 0 1917158 1003 1 species Alteromonas sp. Mac1 0 1777491 1125 species 1 Alteromonas addita 287094 0 species 1 217 715451 0 Alteromonas naphthalenivorans Alteromonas australica 0 589873 124 species 1 1621534 0 1 genus 596 Paraglaciecola psychrophila 326544 0 596 1 species genus 2 2394 0 89404 1 no rank 516 0 2618684 species 1 516 983545 0 Glaciecola sp. 4H-3-7+YE-5 1878 species 1 Glaciecola nitratireducens 0 300231 1671 8 2 genus Lacimicrobium 1 1751872 0 Lacimicrobium alkaliphilum 1526571 0 1663 species 1 family 25 3 17283 0 267888 1 Pseudoalteromonadaceae 17280 474 24 genus Pseudoalteromonas 0 53246 1 1 species 1980 1348114 0 Pseudoalteromonas piratica no rank 5 3371 194690 0 species 1 236 283699 0 Pseudoalteromonas sp. Bsw20308 895 1 species Pseudoalteromonas sp. SM9913 234831 0 0 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1 1548 586 1 species Pseudoalteromonas sp. 13-15 0 1761891 Pseudoalteromonas sp. NC201 1514074 0 106 species 1 313 species 1 Pseudoalteromonas piscicida 0 43662 0 166935 Pseudoalteromonas translucida 1 species 360 species 1 920 152297 0 Pseudoalteromonas issachenkonii 28109 0 Pseudoalteromonas nigrifaciens 1 species 650 2093 1 species Pseudoalteromonas atlantica 0 288 Pseudoalteromonas rubra 43658 0 453 1 species 1059 species 1 Pseudoalteromonas phenolica 161398 0 371 species 1 Pseudoalteromonas espejiana 28107 0 314281 0 Pseudoalteromonas tunicata species 1 410 Pseudoalteromonas agarivorans 176102 0 153 species 1 0 394751 Pseudoalteromonas arctica 1 species 95 Pseudoalteromonas aliena 247523 0 138 species 1 Pseudoalteromonas tetraodonis 0 43659 904 species 1 species 1 135 0 267375 Pseudoalteromonas marina 0 228 Pseudoalteromonas haloplanktis 1 species 387 43657 0 Pseudoalteromonas luteoviolacea 1 species 1376 1 species 1638 0 298657 Pseudoalteromonas spongiae 2242 3 6 family Idiomarinaceae 267893 1 0 genus 5 2239 30 1 135575 0 Idiomarina Idiomarina loihiensis 135577 0 206 1 species 0 2614829 2 no rank 1015 0 2100422 Idiomarina sp. OT37-5b 1 species 544 Idiomarina sp. X4 2055892 0 471 species 1 Idiomarina piscisalsi 1096243 0 988 species 1 535 2 family 3 Moritellaceae 0 267891 1 533 2 2 genus Moritella 0 1 58050 Moritella viscosa 80854 0 531 1 species 267889 1 0 Colwelliaceae 9 family 3680 2 0 1518149 1 Thalassotalea 2 genus 170 1 1 species 169 0 1763536 Thalassotalea crassostreae 1 28228 0 Colwellia genus 6 3508 1 196834 0 2081 no rank 3 626 species 1 Colwellia sp. MT41 0 58049 1 species 979 1816219 0 Colwellia sp. PAMC 21821 1816218 0 Colwellia sp. PAMC 20917 species 1 476 1153 1 species Colwellia psychrerythraea 28229 0 Colwellia beringensis 0 1967665 273 species 1 25 835 3 family Ferrimonadaceae 267892 1 0 810 4 genus 2 Ferrimonas 1 44011 0 Ferrimonas balearica 44012 0 806 species 1 Psychromonadaceae 1 267894 0 692 8 family 4 0 1 67572 Psychromonas 3 genus 684 2 475 1 no rank 0 2614957 species 1 475 314282 0 Psychromonas sp. CNPT3 Psychromonas ingrahamii 357794 0 207 1 species 528 23816 25 family Shewanellaceae 267890 1 0 711 23288 genus 24 Shewanella 0 22 1 731 species 1 Shewanella denitrificans 192073 0 Shewanella violacea 0 60217 1099 species 1 1 species 1436 70863 0 Shewanella oneidensis species 1 2583 0 359303 Shewanella loihica 0 70864 Shewanella pealeana 1 species 1623 species 1 1299 60478 0 Shewanella amazonensis 212 species 1 Shewanella bicestrii 0 2018305 1258 species 1 Shewanella japonica 93973 0 1787 1 species Shewanella psychrophila 225848 0 6 no rank 3694 196818 0 1012 1 species Shewanella sp. WE21 2029986 0 1 species 718 60480 0 Shewanella sp. MR-4 Shewanella sp. MR-7 0 60481 647 1 species 2059264 0 Shewanella sp. Pdp11 1 species 219 species 1 425 351745 0 Shewanella sp. W3-18-1 94122 0 Shewanella sp. ANA-3 1 species 673 Shewanella sediminis 271097 0 1181 1 species species 1 686 0 404011 Shewanella piezotolerans 1368 species 1 Shewanella baltica 0 62322 0 56812 Shewanella frigidimarina species 1 642 Shewanella putrefaciens 0 24 391 species 1 271098 0 Shewanella halifaxensis 1 species 986 1 species 998 60961 0 Shewanella woodyi 603 species 1 Shewanella marisflavi 0 260364 11 no rank 3913 0 118884 genus 2 1010 1 0 1 1524249 Pseudohongiella 1009 species 1 Pseudohongiella spirulinae 1249552 0 1014 clade 1 0 198346 1014 species 1 Candidatus Baumannia cicadellinicola 186490 0 1 887 genus 3 Candidatus Thioglobus 1 655184 0 species 1 290 1705394 0 Candidatus Thioglobus autotrophicus 596 species 1 Candidatus Thioglobus singularis 0 1427364 1608298 0 157 1 genus 157 species 1 Thiolapillus brandeum 1076588 0 clade 3 223 0 32036 54 species 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 0 species 1 33 410330 0 Calyptogena okutanii thioautotrophic gill symbiont 1 genus 136 1541743 0 1 species 136 0 386487 Candidatus Ruthia magnifica genus 1 622 0 349742 species 1 622 1543721 0 Sedimenticola thiotaurini 1775403 0 513 order 2 Sinobacteraceae 0 568386 1 1 family 2689614 0 512 1 family 469322 0 512 1 genus 512 species 1 Steroidobacter denitrificans 0 465721 Aeromonadales 0 1 135624 18386 25 27 order 0 1 84642 Aeromonadaceae 26 family 18361 114 genus 2 868 9 129577 1 0 Oceanimonas 0 2636315 859 no rank 1 859 species 1 Oceanimonas sp. GK1 511062 0 1073 1 2 genus Zobellella 347533 1 0 0 347534 Zobellella denitrificans species 1 1072 1920 2 genus 225143 0 Oceanisphaera profunda 0 1416627 1797 species 1 Oceanisphaera sp. AMac2203 0 1903694 123 1 species 0 43947 genus 1 1786 1786 species 1 Tolumonas auensis 0 43948 Aeromonas 642 1 0 1435 12600 genus 18 2032 1 species Aeromonas rivipollensis 948519 0 0 648 Aeromonas caviae 1 species 137 Aeromonas aquatica 558964 0 393 1 species 0 654 Aeromonas veronii species 1 1352 191 species 1 Aeromonas media 651 0 1 species 532 0 652 Aeromonas schubertii 0 645 Aeromonas salmonicida species 1 602 196024 0 Aeromonas dhakensis 1 species 212 2732 species 1 Aeromonas hydrophila 644 0 2982 8 no rank 257493 0 0 1636608 Aeromonas sp. ASNIH3 species 1 402 89 species 1 Aeromonas sp. ASNIH1 1636606 0 78 species 1 Aeromonas sp. ASNIH5 1758179 0 1 species 119 1636607 0 Aeromonas sp. ASNIH2 137 1 species Aeromonas sp. ASNIH7 1920107 0 425 1 species Aeromonas sp. ASNIH4 1636609 0 species 1 757 2033033 0 Aeromonas sp. CU5 Aeromonas sp. CA23 2033032 0 975 species 1 order 48 17282 86 0 135613 1 Chromatiales 1 449719 0 Granulosicoccaceae 3 family 4 1539 Granulosicoccus 0 1 437504 1 1535 genus 2 1534 1 species Granulosicoccus antarcticus 0 437505 Woeseiaceae 0 1738654 1 135 1 family 3 1 1738655 0 Woeseia 2 genus 134 1 1548547 0 Woeseia oceani species 1 133 255526 1 0 Halothiobacillaceae 4 family 2843 27 2816 6 3 genus Halothiobacillus 0 109262 1 species 1 1428 0 927 Halothiobacillus neapolitanus 2636392 0 no rank 1 1382 1860122 0 Halothiobacillus sp. LS2 species 1 1382 5402 71 15 family Chromatiaceae 1046 1 0 85072 1 0 Allochromatium 2 genus 568 6 1 species 562 0 1049 Allochromatium vinosum 1 no rank 791 82569 0 species 1 791 0 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 73 335 genus 2 Candidatus Nitrosoglobus 0 1980513 1 262 1 species Candidatus Nitrosoglobus terrae 1630141 0 0 156885 206 1 genus 1 species 206 0 80679 Thioflavicoccus mobilis genus 2 7 216 85076 1 0 Marichromatium 37487 0 Marichromatium purpuratum 1 species 209 1227 0 1801 genus 3 231 1 species Nitrosococcus watsonii 0 473531 1 species 622 133539 0 Nitrosococcus halophilus Nitrosococcus oceani 1229 0 948 species 1 13724 1 0 Thiocystis 2 genus 916 3 73141 0 Thiocystis violascens species 1 913 53392 0 1 genus 498 Candidatus Thiodictyon syntrophicum 0 1166950 498 species 1 0 451214 511 2 no rank Thiohalobacter 0 1 1273155 94 511 genus 2 1 species 417 0 585455 Thiohalobacter thiocyanaticus 471 12 family 3 Wenzhouxiangellaceae 0 1 1676141 2 genus 19 459 0 1676142 1 Wenzhouxiangella Wenzhouxiangella marina 1579979 0 440 species 1 Ectothiorhodospiraceae 72276 1 0 6295 17 17 family 2719 27 6 genus Thioalkalivibrio 106633 1 0 Thioalkalivibrio sulfidiphilus 0 1033854 748 species 1 0 108010 Thioalkalivibrio paradoxus 1 species 90 472 species 1 Thioalkalivibrio nitratireducens 186931 0 221 1 no rank 2621013 0 species 1 221 396595 0 Thioalkalivibrio sp. K90mix 1161 species 1 Thioalkalivibrio versutus 0 106634 genus 2 3 133 0 1 85108 Halorhodospira 0 1053 Halorhodospira halophila 1 species 130 2 genus 130 3 0 1051 1 Ectothiorhodospira 0 2684909 1 no rank 127 Ectothiorhodospira sp. BSL-9 1442136 0 127 species 1 1371 1 genus 3 Spiribacter 1 1335745 0 species 1 1336 0 1335757 Spiribacter curvatus 1335746 0 Spiribacter salinus species 1 34 1 1765964 0 Acidihalobacter genus 2 3 1102 1 species 1099 160660 0 Acidihalobacter prosperus 1 genus 823 0 133193 823 1 species Alkalilimnicola ehrlichii 351052 0 6 259 4 order Immundisolibacterales 0 1934945 1 Immundisolibacteraceae 1934946 1 0 253 22 3 family genus 2 231 11 1 1934947 0 Immundisolibacter 220 species 1 Immundisolibacter cernigliae 1810504 0 131 35561 62 order Oceanospirillales 0 1 135619 11 family 9323 425 0 135620 1 Oceanospirillaceae genus 2 3 1272 0 1 48075 Marinobacterium 1821621 0 Marinobacterium aestuarii 1 species 1269 Bacterioplanes 1 1537406 0 983 1 2 genus species 1 982 1249553 0 Bacterioplanes sanyensis 0 188907 1040 1 genus 1 species 1040 188908 0 Oleispira antarctica Marinomonas 0 1 28253 4270 1 4 genus 875 1 no rank 0 196814 1 species 875 0 400668 Marinomonas sp. MWYL1 Marinomonas posidonica 936476 0 1844 species 1 Marinomonas mediterranea 0 119864 1550 species 1 1333 genus 1 0 187492 Thalassolituus oleivorans 187493 0 1333 species 1 224372 1 0 Alcanivoracaceae family 8 15 4222 0 59753 1 Alcanivorax 6 genus 15 3207 0 59754 Alcanivorax borkumensis 1 species 499 1 species 477 285091 0 Alcanivorax dieselolei 502 no rank 1 0 2638842 1 species 502 0 1113728 Alcanivorax sp. NBRC 101098 452 1 species Alcanivorax xenomutans 1094342 0 Alcanivorax pacificus 1306787 0 1262 species 1 2025617 0 genus 1 1000 1000 1 species Ketobacter alkanivorans 1917421 0 1920240 0 family 5 1344 genus 5 1344 3 0 1 261963 Kangiella Kangiella geojedonensis 0 914150 241 1 species 0 1144748 Kangiella sediminilitoris 1 species 853 1561924 0 Kangiella profundi species 1 171 76 species 1 Kangiella koreensis 261964 0 391 1 family 3 Hahellaceae 0 224379 1 Hahella 0 158481 1 6 390 genus 2 Hahella chejuensis 158327 0 384 species 1 family 30 97 17118 28256 1 0 Halomonadaceae genus 3 4 4971 1 504090 0 Kushneria 1 species 2696 0 157779 Kushneria marisflavi 2271 1 species Kushneria konosiri 698828 0 7 479 genus 2 Cobetia 0 204286 1 0 28258 Cobetia marina species 1 472 0 114403 no rank 3 62 1 genus 2 0 114185 species 1 2 0 114186 Candidatus Carsonella ruddii 0 235572 genus 1 17 0 91844 Candidatus Portiera aleyrodidarum 1 species 17 1495768 0 43 genus 1 1 species 43 0 1495769 Candidatus Evansia muelleri Salinicola 0 1 404432 354 4 2 genus species 1 350 1771309 0 Salinicola tamaricis 376488 1 0 Halotalea genus 2 11 1134 1 species 1123 376489 0 Halotalea alkalilenta Halomonas 1 2745 0 8659 458 15 genus 637 species 1 Halomonas huangheensis 1178482 0 4572 8 no rank 2609666 0 species 1 1197 0 2136172 Halomonas sp. SF2003 1 species 100 1971364 0 Halomonas sp. GT Halomonas sp. R57-5 0 1610576 243 1 species Halomonas sp. 1513 0 1883416 744 1 species 396 1 species Halomonas sp. 'Soap Lake #7' 0 1962264 Halomonas sp. GFAJ-1 1118153 0 134 1 species 1949203 0 Halomonas sp. 'Soap Lake #6' species 1 396 1 species 1362 1504981 0 Halomonas sp. KO116 1 species 363 0 475662 Halomonas beimenensis 1130 species 1 Halomonas hydrothermalis 0 115561 1 species 693 0 1897729 Halomonas aestuarii Halomonas chromatireducens 0 507626 641 species 1 0 213554 Halomonas campaniensis species 1 165 1362 1 2 genus Chromohalobacter 0 1 42054 1361 1 species Chromohalobacter salexigens 0 158080 1971 family 3 255527 0 1106 5 2 genus Gynuella 1 1445504 0 Gynuella sunshinyii 1445505 0 1101 species 1 0 230494 genus 1 865 865 1 species Reinekea forsetii 1336806 0 1061 1 family 0 191033 141450 0 1061 1 genus Oleiphilus messinensis 141451 0 1061 1 species 13930 6 24 order Cellvibrionales 1 1706369 0 1706372 0 3 family 2722 Halioglobus 1 1217416 0 2 2722 3 genus 0 930805 Halioglobus japonicus species 1 1362 1358 1 species Halioglobus pacificus 930806 0 family 4 1226 7 0 1706375 1 Spongiibacteraceae genus 1 217 1084558 0 217 species 1 Oceanicoccus sagamiensis 0 716816 498 genus 1 1434050 0 498 species 1 Zhongshania aliphaticivorans 1470434 0 genus 1 504 630749 0 no rank 1 504 2631504 0 species 1 504 0 1620392 Spongiibacter sp. IMCC21906 0 1706371 1 Cellvibrionaceae family 11 410 6587 146 3661 genus 4 Cellvibrio 1 10 0 species 1 1120 155077 0 Cellvibrio japonicus 2395 2 no rank 2624793 0 1987723 0 Cellvibrio sp. PSBB006 species 1 171 Cellvibrio sp. PSBB023 0 1945512 2224 species 1 2036021 0 423 1 genus Agarilytica rhodophyticola 0 1737490 423 species 1 Simiduia 447467 1 0 1 808 genus 2 807 species 1 Simiduia agarivorans 0 447471 316625 0 883 genus 1 species 1 883 0 86304 Saccharophagus degradans 1 402 genus 2 Teredinibacter 1 2425 0 401 species 1 Teredinibacter turnerae 2426 0 family 5 9 3389 0 1706373 1 Microbulbiferaceae 1 48073 0 Microbulbifer genus 4 3380 2 252514 0 Microbulbifer thermotolerans 1 species 785 species 1 1507 260552 0 Microbulbifer agarilyticus 1 species 1086 1769779 0 Microbulbifer aggregans 5 order 1432 0 1240482 0 1 1240483 Orbaceae family 5 25 1432 Gilliamella 1 1193503 0 1059 1 2 genus 1196095 0 Gilliamella apicola species 1 1058 0 1 1335631 Frischella genus 2 348 2 346 species 1 Frischella perrara 0 1267021 839 no rank 2 33811 0 endosymbiont of unidentified scaly snail isolate Monju 1248727 0 243 1 species 1 species 596 83406 0 gamma proteobacterium HdN1 1 135614 0 Xanthomonadales order 53 1338 35008 222 6294 13 family Rhodanobacteraceae 1 1775411 0 genus 2 1 763 1 323413 0 Dokdonella 0 323415 Dokdonella koreensis 1 species 762 8 1582 4 genus Dyella 1 231454 0 Dyella jiangningensis 1379159 0 765 1 species 165 species 1 Dyella thiooxydans 0 445710 644 1 species Dyella japonica 0 231455 genus 2 4 175 1 70411 0 Frateuria 171 1 species Frateuria aurantia 81475 0 0 242605 genus 1 1891 1891 1 species Luteibacter rhizovicinus 242606 0 246 1 genus 0 2233801 species 1 246 2021234 0 Xanthomonadales bacterium D13 2 genus 4 1415 1 75309 0 Rhodanobacter 1411 species 1 Rhodanobacter denitrificans 0 666685 39 family 262 27376 0 32033 1 Xanthomonadaceae Xylella 2370 1 0 5 595 genus 2 1 species 590 0 2371 Xylella fastidiosa Lysobacter 0 68 1 3004 8 genus 5 Lysobacter gummosus 0 262324 228 species 1 69 0 Lysobacter enzymogenes species 1 179 Lysobacter antibioticus 0 84531 802 species 1 1787 species 1 Lysobacter capsici 435897 0 1 83614 0 Luteimonas genus 2 703 1 0 2006110 Luteimonas sp. 100111 1 species 702 genus 17 12949 500 1 338 0 Xanthomonas 1 species 1830 339 0 Xanthomonas campestris Xanthomonas alfalfae 366650 0 536 species 1 Xanthomonas vasicola 0 56459 112 1 species 456327 0 Xanthomonas euvesicatoria species 1 670 0 53413 Xanthomonas axonopodis species 1 96 Xanthomonas fragariae 48664 0 223 1 species 1505 1 species Xanthomonas translucens 343 0 1 species 635 56454 0 Xanthomonas hortorum Xanthomonas perforans 442694 0 733 species 1 Xanthomonas oryzae 0 347 508 species 1 1591 species 1 Xanthomonas albilineans 0 29447 0 643453 species group 2 1935 Xanthomonas fuscans 0 366648 330 species 1 1605 1 species Xanthomonas citri 346 0 Xanthomonas phaseoli 1985254 0 1099 1 species 667 species 1 Xanthomonas vesicatoria 56460 0 309 species 1 Xanthomonas sacchari 0 56458 289 8711 9 genus Stenotrophomonas 1 40323 0 Stenotrophomonas nitritireducens 0 83617 775 species 1 species 1 611 0 216778 Stenotrophomonas rhizophila 759 1 species Stenotrophomonas acidaminiphila 0 128780 2509 4 no rank 196198 0 1 species 184 2005046 0 Stenotrophomonas sp. WZN-1 1 species 386 1904944 0 Stenotrophomonas sp. LM091 species 1 281 1793721 0 Stenotrophomonas sp. KCTC 12332 1827305 0 Stenotrophomonas sp. MYb57 species 1 1658 995085 0 3768 1 species group 3768 1 species Stenotrophomonas maltophilia 40324 0 1152 58 3 genus Pseudoxanthomonas 0 1 83618 971 species 1 Pseudoxanthomonas suwonensis 314722 0 species 1 123 415229 0 Pseudoxanthomonas spadix order 11 4 3475 1 135618 0 Methylococcales 0 403 1 Methylococcaceae family 10 3471 359 39773 0 1 genus 972 972 1 species Methylomicrobium alcaliphilum 0 271065 Methylococcus 413 1 0 1 185 2 genus Methylococcus capsulatus 414 0 184 species 1 Methylomonas 0 416 1 1280 22 genus 5 1538553 0 Methylomonas denitrificans species 1 457 1 species 251 0 702114 Methylomonas koyamae 162 1 species Methylomonas methanica 421 0 2608980 0 no rank 1 388 388 species 1 Methylomonas sp. DH-1 0 1727196 675 1 genus 0 762296 0 1704499 Methylovulum psychrotolerans species 1 675 Cardiobacteriales 0 1 135615 243 313 2 order 70 family 1 0 868 0 869 70 1 genus Dichelobacter nodosus 0 870 70 1 species Pseudomonadales 0 1 72274 131866 617 order 129 family 86 1527 97128 1 135621 0 Pseudomonadaceae Pseudomonas 286 1 0 4538 94233 genus 80 1415 species 1 Pseudomonas antarctica 219572 0 1450 1 species Pseudomonas alcaliphila 0 101564 species group 8 9981 136849 0 Pseudomonas avellanae 0 46257 265 species 1 2775504 0 1 no rank 348 1 species 348 1206777 0 Pseudomonas sp. Lz4W 5274 1 species subgroup 251695 0 1 species 5274 0 317 Pseudomonas syringae Pseudomonas viridiflava 0 33069 1809 species 1 0 36746 Pseudomonas cichorii 1 species 443 1 species 1281 0 251701 Pseudomonas syringae group genomosp. 3 561 2 species subgroup 0 251698 29438 0 Pseudomonas savastanoi species 1 228 333 1 species Pseudomonas amygdali 0 47877 0 157782 Pseudomonas parafulva species 1 845 Pseudomonas frederiksbergensis 104087 0 2970 1 species 0 1583341 Pseudomonas cerasi species 1 1276 0 237609 Pseudomonas alkylphenolica species 1 1151 0 136842 2 species group 5047 species 1 3849 0 587753 Pseudomonas chlororaphis 0 296 Pseudomonas fragi 1 species 1198 1788301 0 Pseudomonas versuta 1 species 275 Pseudomonas silesiensis 1853130 0 406 species 1 930166 0 Pseudomonas brassicacearum 1 species 2213 312306 0 Pseudomonas entomophila 1 species 162 9 species group 12079 136843 0 1 species 1040 200451 0 Pseudomonas poae Pseudomonas trivialis 0 200450 783 species 1 47879 0 Pseudomonas corrugata 1 species 363 Pseudomonas fluorescens 294 0 6688 1 species Pseudomonas mandelii 75612 0 803 species 1 1004 species 1 Pseudomonas protegens 380021 0 735 species 1 Pseudomonas orientalis 76758 0 1 species 406 47878 0 Pseudomonas azotoformans 0 76761 Pseudomonas veronii species 1 257 12091 6 species group 0 136845 Pseudomonas mosselii 0 78327 550 1 species species 1 7427 0 303 Pseudomonas putida Pseudomonas oryzihabitans 47885 0 1322 1 species 1 species 133 70775 0 Pseudomonas plecoglossicida 76759 0 Pseudomonas monteilii species 1 1724 0 47880 Pseudomonas fulva species 1 935 196821 0 20026 30 no rank 201 species 1 Pseudomonas sp. FGI182 1259844 0 0 1898684 Pseudomonas sp. LPH1 1 species 804 873 species 1 Pseudomonas sp. XWY-1 0 2069256 Pseudomonas sp. NC02 0 2067572 514 species 1 1500687 0 Pseudomonas sp. St29 1 species 654 Pseudomonas sp. TKP 1415630 0 592 species 1 0 1636610 Pseudomonas sp. PONIH3 1 species 154 1930532 0 Pseudomonas sp. CC6-YY-74 species 1 973 0 2083053 Pseudomonas sp. SWI44 species 1 804 1 species 412 0 2083052 Pseudomonas sp. SWI36 Pseudomonas sp. HLS-6 0 2049589 932 1 species 0 1207075 Pseudomonas sp. UW4 1 species 78 1534110 0 Pseudomonas sp. DR 5-09 species 1 552 species 1 197 0 1649877 Pseudomonas sp. CCOS 191 226 1 species Pseudomonas sp. LG1D9 0 2083054 Pseudomonas sp. Os17 0 1500686 410 1 species Pseudomonas sp. SWI6 0 2083051 766 1 species 0 1028989 Pseudomonas sp. StFLB209 species 1 1412 species 1 150 1981174 0 Pseudomonas sp. M30-35 1 species 592 2083055 0 Pseudomonas sp. LH1G9 216 1 species Pseudomonas sp. FDAARGOS_380 0 2018067 Pseudomonas sp. ATCC 13867 1294143 0 588 species 1 1 species 1058 0 1827300 Pseudomonas sp. MYb193 1 species 349 0 1611770 Pseudomonas sp. MRSN12121 69328 0 Pseudomonas sp. VLB120 species 1 838 Pseudomonas sp. JY-Q 0 1338689 348 1 species Pseudomonas sp. GR 6-02 0 1659194 1262 species 1 1 species 2148 0 1931241 Pseudomonas sp. S-6-2 species 1 1066 1856685 0 Pseudomonas sp. TCU-HL1 1283291 0 Pseudomonas sp. URMO17WK12:I11 species 1 857 136846 0 2116 2 species group species subgroup 1 1969 0 578833 1 species 1969 0 316 Pseudomonas stutzeri 0 74829 Pseudomonas balearica species 1 147 0 216142 Pseudomonas rhizosphaerae species 1 543 species 1 1290 0 244566 Pseudomonas lurida 1 species 1599 237610 0 Pseudomonas psychrotolerans 609 species 1 Pseudomonas knackmussii 65741 0 species group 6 10437 136841 0 Pseudomonas aeruginosa 0 287 3487 1 species 53408 0 Pseudomonas citronellolis 1 species 1214 43263 0 Pseudomonas alcaligenes 1 species 325 0 1232139 1 species subgroup 757 Pseudomonas furukawaii 1149133 0 757 species 1 0 300 Pseudomonas mendocina species 1 3271 species 1 1383 0 53412 Pseudomonas resinovorans 482 species 1 Pseudomonas cremoricolorata 0 157783 1 species 1232 198620 0 Pseudomonas koreensis Oblitimonas 0 1 1849530 3 661 genus 2 658 1 species Oblitimonas alkaliphila 0 1697053 3 subfamily 707 0 351 707 8 3 genus Azotobacter 1 352 0 Azotobacter chroococcum 353 0 501 1 species species 1 198 0 354 Azotobacter vinelandii Moraxellaceae 468 1 0 29 34121 42 family genus 25 21531 51 1 469 0 Acinetobacter 507 1 species Acinetobacter oleivorans 1148157 0 species 1 925 0 40214 Acinetobacter johnsonii 1484 1 species Acinetobacter radioresistens 0 40216 species 1 1031 0 108981 Acinetobacter schindleri 1 species 526 487316 0 Acinetobacter soli species 1 450 106648 0 Acinetobacter bereziniae Acinetobacter indicus 0 756892 757 1 species no rank 7 4459 196816 0 Acinetobacter sp. ACNIH1 0 1636603 224 species 1 species 1 287 1758189 0 Acinetobacter sp. ACNIH2 794 species 1 Acinetobacter sp. TTH0-4 0 1646498 Acinetobacter sp. TGL-Y2 0 1407071 1438 1 species 1499 species 1 Acinetobacter sp. LoGeW2-3 1808001 0 65 1 species Acinetobacter sp. SWBY1 2079596 0 152 1 species Acinetobacter sp. NCu2D-2 1608473 0 238 1 species 0 202950 0 62977 Acinetobacter sp. ADP1 strain 1 238 Acinetobacter equi 0 1324350 718 1 species 683 1 species Acinetobacter larvae 1789224 0 Acinetobacter haemolyticus 0 29430 1169 1 species 0 40215 Acinetobacter junii species 1 2235 909768 0 6298 species group 5 2808 species 1 Acinetobacter baumannii 470 0 Acinetobacter nosocomialis 106654 0 359 species 1 1 species 1376 471 0 Acinetobacter calcoaceticus 1 species 1560 48296 0 Acinetobacter pittii species 1 195 0 1785128 Acinetobacter lactucae 97 4912 genus 5 Moraxella 0 475 1 species 1 1377 0 386891 Moraxella bovoculi 2551 species 1 Moraxella osloensis 0 34062 409 species 1 Moraxella ovis 29433 0 Moraxella catarrhalis 0 480 478 1 species 7649 33 genus 11 Psychrobacter 1 497 0 261164 0 Psychrobacter alimentarius species 1 1270 6 no rank 4772 0 196806 1999 1 species Psychrobacter sp. DAB_AL43B 0 1028416 1 species 1420 0 1720344 Psychrobacter sp. AntiMn-1 1699622 0 Psychrobacter sp. P2G3 species 1 123 Psychrobacter sp. PRwf-1 0 349106 355 1 species 1 species 131 1699624 0 Psychrobacter sp. P11G5 744 1 species Psychrobacter sp. G 0 571800 species 1 118 45610 0 Psychrobacter urativorans 730 1 species Psychrobacter arcticus 0 334543 Psychrobacter cryohalolentis 0 330922 726 species 1 72273 0 20866 30 order Thiotrichaceae 1 135617 0 3 1214 family 5 1091 1 2 genus Beggiatoa 1021 1 0 288004 0 Beggiatoa leptomitoformis 1 species 1090 0 1 40751 Thioploca 2 genus 120 2 Thioploca ingrica 0 40754 118 species 1 4 5001 family 11 Piscirickettsiaceae 0 1 135616 0 40222 762 genus 2 Methylophaga frappieri 754477 0 573 1 species 189 1 species Methylophaga nitratireducenticrescens 0 754476 1940 genus 1 1237 0 species 1 1940 1238 0 Piscirickettsia salmonis 201 1360 genus 4 Cycloclasticus 0 34067 1 no rank 2 760 0 2621467 728003 0 Cycloclasticus sp. PY97N species 1 405 0 385025 Cycloclasticus sp. P1 1 species 355 species 1 399 0 1329899 Cycloclasticus zancles genus 1 246 0 28884 1 species 246 39765 0 Hydrogenovibrio crunogenus 0 933 genus 2 689 1 species 629 0 92245 Thiomicrospira aerophila Thiomicrospira cyclica 147268 0 60 1 species family 14 14651 0 34064 0 1 262 Francisella 12 genus 79 13585 1542390 0 Francisella sp. CA97-1460 1 species 963 Francisella philomiragia 0 28110 2564 species 1 0 549298 Francisella halioticida 1 species 527 622488 0 Francisella hispaniensis 1 species 706 Francisella sp. TX077310 0 573570 279 1 species Francisella persica 954 0 1126 1 species 263 0 Francisella tularensis 1 species 2502 1011 1 species Francisella sp. TX077308 573569 0 no rank 2 2916 0 2610885 Francisella sp. MA067296 0 475375 961 1 species 1 species 1955 0 1547445 Francisella sp. FSC1006 0 657445 Francisella noatunensis 1 species 912 1 1066 genus 2 Allofrancisella 0 1869285 1 Allofrancisella guangzhouensis 594679 0 1065 1 species 982 3 6 order Acidiferrobacterales 1692040 1 0 Acidiferrobacteraceae 0 1692041 1 2 979 5 family 2 genus 10 226 1 1744881 0 Sulfuricaulis Sulfuricaulis limicola 1620215 0 216 species 1 1 751 2 genus Sulfurifustis 0 1692042 1 0 1675686 Sulfurifustis variabilis species 1 750 class 343 1047 227138 1 28216 0 Betaproteobacteria 206351 1 0 Neisseriales 34 order 30165 1050 17269 53 family 21 Neisseriaceae 481 1 0 1574 no rank 1 0 421605 1 species 1574 0 2052837 Neisseriaceae bacterium DSM 100970 Snodgrassella 0 1 1193515 944 15 2 genus 0 1196083 Snodgrassella alvi species 1 929 0 538 808 1 genus 1 species 808 539 0 Eikenella corrodens Simonsiella 71 1 0 983 1 2 genus 1 species 982 0 72 Simonsiella muelleri 0 1 482 Neisseria genus 12 232 11471 0 28091 Neisseria weaveri species 1 774 Neisseria mucosa 0 488 1856 species 1 1 species 2844 0 487 Neisseria meningitidis Neisseria sp. 10023 0 1853278 368 species 1 species 1 1823 490 0 Neisseria sicca 2147 no rank 2 2623750 0 1895 1 species Neisseria sp. 10022 1853276 0 1 species 252 0 655307 Neisseria sp. KEM232 0 485 Neisseria gonorrhoeae species 1 166 Neisseria lactamica 0 486 632 species 1 1 species 363 0 326523 Neisseria zoodegmatis Neisseria elongata 0 495 266 species 1 1436 2 genus 59 0 1030 1 no rank 0 2627922 1030 1 species Vitreoscilla sp. C1 0 96942 63 0 Vitreoscilla filiformis species 1 406 12 family 774 11846 1 1499392 0 Chromobacteriaceae 666 1 genus 0 187 0 2620219 1 no rank 666 0 1938604 Aquaspirillum sp. LM1 1 species 666 2 genus 79 1904 168470 1 0 Laribacter 1 species 1825 0 168471 Laribacter hongkongensis Pseudogulbenkiania 0 1 568394 10 2123 genus 2 2113 no rank 1 0 2642558 Pseudogulbenkiania sp. NH8B 748280 0 2113 species 1 2 genus 6 243 0 1 885864 Jeongeupia 0 2619593 237 no rank 1 237 1 species Jeongeupia sp. USM3 0 1906741 4 no rank 6136 0 90153 63 6136 genus 4 Chromobacterium 1 535 0 Chromobacterium vaccinii 1108595 0 3967 species 1 0 2641838 241 no rank 1 2059672 0 Chromobacterium sp. ATCC 53434 species 1 241 0 536 Chromobacterium violaceum 1 species 1865 188 15962 order 43 Nitrosomonadales 32003 1 0 11 2147 5 family Sterolibacteriaceae 0 1 2008793 10 1806 genus 2 Sulfuritalea 0 1 1054211 0 748811 Sulfuritalea hydrogenivorans 1 species 1796 1 378210 0 Methyloversatilis 2 genus 330 9 1 no rank 321 0 2639971 0 1842540 Methyloversatilis sp. RAC08 species 1 321 family 3 1 612 0 1 2008790 Thiobacillaceae 2 611 2 genus Thiobacillus 919 1 0 1 species 609 0 36861 Thiobacillus denitrificans family 4 1382 2772226 0 0 1 1778653 Sulfuriferula 2 genus 2 1148 2637784 0 1146 1 no rank species 1 1146 0 1985873 Sulfuriferula sp. AH1 Sulfuricella 1 935200 0 234 3 2 genus 231 1 species Sulfuricella denitrificans 0 649841 13 family 20 5579 0 1 32011 Methylophilaceae genus 2 576 0 1679002 1581557 0 Candidatus Methylopumilus planktonicus 1 species 68 species 1 508 0 1581680 Candidatus Methylopumilus turicensis 2333 16 3 genus Methylovorus 81682 1 0 Methylovorus glucosotrophus 266009 0 1241 1 species 1076 no rank 1 0 2634027 0 887061 Methylovorus sp. MP688 species 1 1076 10 278 genus 2 Methylophilus 16 1 0 2630143 0 1 no rank 268 1 species 268 1662285 0 Methylophilus sp. TWE2 Methylotenera 359407 1 0 4 1665 3 genus 0 359408 Methylotenera mobilis 1 species 942 719 species 1 Methylotenera versatilis 1055487 0 Methylobacillus 1 404 0 1 707 2 genus 405 0 Methylobacillus flagellatus species 1 706 90627 1 0 Gallionellaceae family 5 1558 716 Sideroxydans 314343 1 0 11 208 2 genus 1 species 197 63745 0 Sideroxydans lithotrophicus 1 634 2 genus Gallionella 1 96 0 633 species 1 Gallionella capsiferriformans 0 370405 Nitrosomonadaceae 0 206379 1 4496 116 12 family Nitrosomonas 914 1 0 10 3048 7 genus 0 44577 Nitrosomonas ureae 1 species 562 898 1 species Nitrosomonas communis 44574 0 915 0 Nitrosomonas europaea 1 species 493 843 no rank 2 0 2609265 0 261292 Nitrosomonas sp. Is79A3 species 1 217 153948 0 Nitrosomonas sp. AL212 1 species 626 1 species 242 916 0 Nitrosomonas eutropha 20 1332 4 genus Nitrosospira 1 35798 0 35799 0 Nitrosospira briensis species 1 381 291 1 species Nitrosospira multiformis 1231 0 640 species 1 Nitrosospira lacus 1288494 0 0 119066 11 no rank 883 6 genus 9 500 0 33055 1 Kinetoplastibacterium 50 1 species Kinetoplastibacterium blastocrithidii 233181 0 1 species 29 994695 0 Candidatus Kinetoplastibacterium galatii Candidatus Kinetoplastibacterium crithidii 33056 0 93 species 1 184 species 1 Candidatus Kinetoplastibacterium oncopeltii 0 994696 1 species 135 0 994692 Candidatus Kinetoplastibacterium desouzaii 1 genus 9 0 1301080 9 1 species Candidatus Nasuia deltocephalinicola 0 1160784 19 311 2 genus Candidatus Accumulibacter 1 327159 0 292 1 species Candidatus Accumulibacter phosphatis 0 327160 34 1 genus 1381133 0 Candidatus Profftella armatura 669502 0 34 1 species 0 189384 1 genus 29 0 189385 Candidatus Tremblaya princeps 1 species 29 33809 0 no rank 2 758 Betaproteobacteria bacterium GR16-43 1904640 0 573 species 1 0 543913 beta proteobacterium CB 1 species 185 0 1 206389 Rhodocyclales order 22 10842 240 Rhodocyclaceae 75787 1 0 3577 58 family 6 146937 1 0 Azospira genus 2 17 646 146939 0 Azospira oryzae 1 species 629 0 75788 1 no rank 776 0 1898103 Rhodocyclaceae bacterium 1 species 776 1 551759 0 Aromatoleum 2 genus 2097 12 0 551760 Aromatoleum aromaticum species 1 2085 0 2008794 1 Zoogloeaceae family 12 109 5626 genus 5 1720 24 1 12960 0 Azoarcus species 1 246 2067960 0 Azoarcus sp. SY39 1242 no rank 2 0 2629479 748247 0 Azoarcus sp. KH32C 1 species 956 species 1 286 198107 0 Azoarcus sp. CIB 208 species 1 Azoarcus olearius 418699 0 Thauera 0 33057 1 114 3797 genus 6 Thauera aromatica 0 59405 785 species 1 704 1 species Thauera chlorobenzoica 96773 0 1134435 0 Thauera humireducens 1 species 773 1421 2 no rank 0 2609274 0 85643 Thauera sp. MZ1T 1 species 859 1 species 562 2005884 0 Thauera sp. K11 family 3 1399 10 0 2008795 1 Azonexaceae 12 1389 2 genus Dechloromonas 0 73029 1 259537 0 Dechloromonas aromatica species 1 1377 1 80840 0 Burkholderiales 230 order 1721 167481 0 75682 1 Oxalobacteraceae 29 family 22535 119 genus 4 4393 75 1 202907 0 Collimonas 1 species 1574 0 158899 Collimonas fungivorans 2447 1 species Collimonas arenae 279058 0 279113 0 Collimonas pratensis 1 species 297 822 17 3 genus Herminiimonas 1 303379 0 Herminiimonas arsenicoxydans 204773 0 265 species 1 540 1 species Herminiimonas arsenitoxidans 0 1809410 2 864 2 genus Oxalobacter 0 846 1 862 1 species Oxalobacter formigenes 847 0 genus 6 65 3429 0 1 149698 Massilia 2609279 0 2 no rank 1480 780 species 1 Massilia sp. WG5 1707785 0 700 1 species Massilia sp. NR 4-1 0 1678028 1 species 1251 0 2072590 Massilia sp. ZMN-3 Massilia putida 1141883 0 318 1 species 315 species 1 Massilia sp. B2 0 2045208 29580 1 0 Janthinobacterium 7 genus 32 5307 0 368607 Janthinobacterium svalbardensis 1 species 1407 2459 no rank 4 2610881 0 1644131 0 Janthinobacterium sp. 1_2014MBL_MicDiv species 1 1296 Janthinobacterium sp. Marseille 0 375286 373 species 1 1 species 276 0 1236179 Janthinobacterium sp. B9-8 0 1938606 Janthinobacterium sp. LM6 species 1 514 0 55508 Janthinobacterium agaricidamnosum 1 species 1409 108 7601 6 genus Herbaspirillum 963 1 0 1804 species 1 Herbaspirillum hiltneri 341045 0 no rank 1 1168 0 2624150 Herbaspirillum sp. meg3 2025949 0 1168 1 species Herbaspirillum frisingense 92645 0 1289 species 1 Herbaspirillum rubrisubalbicans 0 80842 1204 1 species 2028 1 species Herbaspirillum seropedicae 964 0 1 80864 0 Comamonadaceae 57 family 615 29388 1032 genus 2 0 2490452 1 species 98 1458425 0 Comamonadaceae bacterium A1 934 species 1 Comamonadaceae bacterium B1 0 1458426 genus 2 1105 22 1 201096 0 Alicycliphilus 1 species 1083 179636 0 Alicycliphilus denitrificans 2419 41 5 genus Variovorax 34072 1 0 Variovorax paradoxus 0 34073 1478 species 1 699 2 no rank 0 663243 1 species 510 1795631 0 Variovorax sp. PAMC 28711 Variovorax sp. PMC12 2126319 0 189 species 1 201 species 1 Variovorax boronicumulans 0 436515 8 2142 3 genus Limnohabitans 0 665874 1 0 2626134 2134 2 no rank Limnohabitans sp. 103DPR2 0 1678129 1712 1 species Limnohabitans sp. 63ED37-2 0 1678128 422 1 species 1 genus 320 2678886 0 0 2116657 Melaminivora sp. SC2-7 1 species 320 12916 1 0 Acidovorax 9 genus 208 4700 80869 0 Acidovorax citrulli species 1 305 species 1 872 0 80867 Acidovorax avenae 185 species 1 Acidovorax ebreus 0 721785 553814 0 Acidovorax sp. NA3 species 1 897 no rank 4 2233 0 2684926 306 1 species Acidovorax sp. KKS102 0 358220 0 1842533 Acidovorax sp. RAC01 species 1 910 1 species 273 0 232721 Acidovorax sp. JS42 species 1 744 0 1858609 Acidovorax sp. T1 0 1 352450 Simplicispira 2 genus 1 212 2109915 0 Simplicispira sp. SC1-8 1 species 211 4 genus 1206 14 0 47420 1 Hydrogenophaga 714 2 no rank 0 2610897 Hydrogenophaga sp. RAC07 0 1842537 394 1 species 0 795665 Hydrogenophaga sp. PBC species 1 320 Hydrogenophaga crassostreae 0 1763535 478 species 1 1403 3 genus 3 Polaromonas 52972 1 0 0 2638319 1 no rank 861 Polaromonas sp. JS666 296591 0 861 1 species 216465 0 Polaromonas naphthalenivorans 1 species 539 2657 126 genus 5 Rhodoferax 0 1 28065 Rhodoferax koreense 1842727 0 234 1 species 1484693 0 Rhodoferax saidenbachensis species 1 499 Rhodoferax antarcticus 81479 0 938 species 1 Rhodoferax ferrireducens 0 192843 860 1 species 490 11 genus 2 Ramlibacter 1 174951 0 0 94132 Ramlibacter tataouinensis species 1 479 174 4671 5 genus Delftia 1 80865 0 Delftia acidovorans 0 80866 1675 1 species 2168 2 no rank 0 2613839 1 species 765 742013 0 Delftia sp. Cs1-4 Delftia sp. HK171 0 1920191 1403 1 species 654 1 species Delftia tsuruhatensis 0 180282 0 1649468 1 Melaminivora 2 genus 2 261 0 2641902 259 no rank 1 259 species 1 Melaminivora sp. SC2-9 2109913 0 7 315 genus 2 Diaphorobacter 238749 1 0 308 species 1 Diaphorobacter polyhydroxybutyrativorans 1546149 0 60 4131 4 genus Comamonas 283 1 0 480 1 species Comamonas kerstersii 0 225992 0 285 Comamonas testosteroni 1 species 3140 species 1 451 0 1082851 Comamonas serinivorans 2 genus 220 1 0 364316 1 Verminephrobacter species 1 219 0 364317 Verminephrobacter eiseniae 0 1436289 1 genus 298 species 1 298 0 1436290 Candidatus Symbiobacter mobilis 2 genus 1191 219181 0 species 1 402 2109914 0 Ottowia sp. KADR8-3 789 1 no rank 0 2645081 0 1658672 Ottowia sp. oral taxon 894 1 species 789 Burkholderiaceae 0 119060 1 66397 387 family 83 12 genus 428 11360 1 1822464 0 Paraburkholderia 0 134537 Paraburkholderia fungorum 1 species 271 Paraburkholderia aromaticivorans 0 2026199 1713 species 1 species 1 588 0 252970 Paraburkholderia phenoliruptrix 1481 species 1 Paraburkholderia hospita 0 169430 148447 0 Paraburkholderia phymatum species 1 928 1285 1 species Paraburkholderia sprentiae 0 948107 species 1 1603 0 75105 Paraburkholderia caribensis 1 species 1234 0 261302 Paraburkholderia phytofirmans Paraburkholderia terrae 311230 0 1115 1 species 165 no rank 1 2615204 0 0 1926494 Paraburkholderia sp. SOS3 species 1 165 Paraburkholderia xenovorans 0 36873 549 1 species 1 48736 0 Ralstonia 5 genus 4899 64 species 1 531 190721 0 Ralstonia insidiosa Ralstonia mannitolilytica 0 105219 313 1 species 1224 species 1 Ralstonia pickettii 0 329 Ralstonia solanacearum 305 0 2767 species 1 859 genus 1 1827195 0 Burkholderia sp. RPE64 0 758793 859 species 1 1 93217 0 Pandoraea genus 10 141 3197 93222 0 Pandoraea sputorum 1 species 180 0 445709 Pandoraea thiooxydans 1 species 451 1 species 639 0 93220 Pandoraea pnomenusa 220 1 species Pandoraea faecigallinarum 656179 0 1 species 713 573737 0 Pandoraea oxalativorans 213 species 1 Pandoraea vervacti 656178 0 129 1 species Pandoraea pulmonicola 93221 0 Pandoraea norimbergensis 93219 0 229 species 1 93218 0 Pandoraea apista 1 species 282 41 genus 1120 34493 0 1 32008 Burkholderia species 1 463 0 337 Burkholderia glumae species 1 1014 28095 0 Burkholderia gladioli 0 87882 species group 19 22533 617 species 1 Burkholderia pseudomultivorans 0 1207504 0 101571 Burkholderia ubonensis species 1 701 1663 1 species Burkholderia cepacia 292 0 species 1 372 1503054 0 Burkholderia stagnalis 220 1 species Burkholderia seminalis 488731 0 78 1 species Burkholderia metallica 0 488729 149 1 species Burkholderia territorii 1503055 0 Burkholderia lata 482957 0 11825 1 species 511 1 species Burkholderia stabilis 0 95485 1 species 837 0 60552 Burkholderia vietnamiensis 1640 species 1 Burkholderia cenocepacia 95486 0 1 species 67 0 60550 Burkholderia pyrrocinia 0 152480 Burkholderia ambifaria 1 species 232 0 488446 Burkholderia latens species 1 108 437 species 1 Burkholderia contaminans 488447 0 0 152500 Burkholderia dolosa species 1 309 0 488732 Burkholderia diffusa 1 species 495 231 1 species [Pseudomonas] mesoacidophila 0 265293 87883 0 Burkholderia multivorans species 1 2041 111527 0 2266 7 species group 28450 0 Burkholderia pseudomallei 1 species 212 0 13373 Burkholderia mallei 1 species 61 species 1 566 1637841 0 Burkholderia sp. MSMB0852 1637831 0 Burkholderia sp. MSMB617WGS 1 species 255 493 species 1 Burkholderia sp. MSMB0266 0 1637837 Burkholderia thailandensis 57975 0 274 species 1 405 1 species Burkholderia oklahomensis 342113 0 Burkholderia plantarii 41899 0 331 1 species 2613784 0 6766 no rank 11 species 1 769 416344 0 Burkholderia sp. KJ006 1 species 113 0 1740163 Burkholderia sp. Bp7605 733 1 species Burkholderia sp. HB1 0 1678678 Burkholderia sp. 2002721687 0 1468409 538 species 1 Burkholderia sp. PAMC 28687 0 1795874 289 1 species 1097668 0 Burkholderia sp. YI23 1 species 866 Burkholderia sp. Bp5365 0 1740162 533 species 1 640510 0 Burkholderia sp. CCGE1001 1 species 532 0 640512 Burkholderia sp. CCGE1003 1 species 657 Burkholderia sp. RPE67 0 758796 1294 species 1 0 1795043 Burkholderia sp. PAMC 26561 1 species 442 186 genus 1 2571159 0 Paraburkholderia rhizoxinica 0 412963 186 1 species 44013 0 2412 3 genus Polynucleobacter asymbioticus 576611 0 1309 1 species 576610 0 Polynucleobacter necessarius 1 species 602 1 species 501 0 1835254 Polynucleobacter duraquae Cupriavidus 0 1 106589 8604 401 9 genus 1 species 1109 248026 0 Cupriavidus pinatubonensis Cupriavidus basilensis 68895 0 1655 species 1 1 species 465 0 82541 Cupriavidus gilardii species 1 484 0 119219 Cupriavidus metallidurans 106590 0 Cupriavidus necator 1 species 571 no rank 2 2659 2640874 0 1972 species 1 Cupriavidus sp. USMAHM13 0 1389192 Cupriavidus sp. USMAA2-4 0 876364 687 species 1 1260 1 species Cupriavidus sp. USMAA1020 0 367825 0 224471 no rank 17 10002 2 genus 3 1117 318147 1 0 Paucibacter 1114 no rank 1 0 2642959 Paucibacter sp. KCTC 42545 1768242 0 1114 1 species [Polyangium] brachysporum 0 413882 214 species 1 2 genus 1414 2 1 65047 0 Mitsuaria 1412 1 no rank 2648776 0 1412 species 1 Mitsuaria sp. 7 1658665 0 Methylibium 0 1 316612 262 10 2 genus Methylibium petroleiphilum 105560 0 252 1 species 2830 14 genus 2 Rubrivivax 0 1 28067 Rubrivivax gelatinosus 0 28068 2816 species 1 2 genus 1848 8 0 1 32012 Thiomonas Thiomonas intermedia 0 926 1840 1 species Leptothrix 0 88 1 205 3 2 genus 0 34029 Leptothrix cholodnii 1 species 202 Rhizobacter 1 212743 0 905 5 genus 2 species 1 900 0 946333 Rhizobacter gummiphilus Roseateles 1 93681 0 5 1207 2 genus Roseateles depolymerans 0 76731 1202 1 species family 41 23938 140 506 1 0 Alcaligenaceae 0 90243 781 1 genus 781 1 species Oligella urethralis 90245 0 2 genus 631 12 0 1921582 1 Orrella 0 1851544 Orrella dioscoreae species 1 619 1 29574 0 Taylorella genus 3 954 1 817 1 species Taylorella asinigenitalis 0 84590 Taylorella equigenitalis 29575 0 136 1 species Achromobacter 0 222 1 7044 527 6 genus Achromobacter spanius 217203 0 1189 1 species Achromobacter xylosoxidans 0 85698 3759 species 1 Achromobacter insolitus 217204 0 734 species 1 0 2626865 227 no rank 1 1758194 0 Achromobacter sp. AONIH1 1 species 227 species 1 608 0 32002 Achromobacter denitrificans genus 3 8 1263 0 1 290425 Advenella Advenella mimigardefordensis 302406 0 978 species 1 0 310575 Advenella kashmirensis species 1 277 0 305976 1 Pusillimonas genus 2 2 244 0 2640016 242 1 no rank 242 1 species Pusillimonas sp. T7-7 1007105 0 0 1100891 138 1 genus species 1 138 0 643674 Paenalcaligenes hominis 517 10005 genus 17 Bordetella 517 1 0 Bordetella genomosp. 8 0 1416806 942 species 1 1025 1 species Bordetella pseudohinzii 1331258 0 Bordetella bronchiseptica 518 0 285 1 species species 1 125 0 519 Bordetella parapertussis 1 species 153 463024 0 Bordetella genomosp. 6 2630031 0 1 no rank 236 1697043 0 Bordetella sp. H567 1 species 236 Bordetella bronchialis 463025 0 490 species 1 2388 1 species Bordetella trematum 0 123899 Bordetella holmesii 35814 0 183 species 1 Bordetella hinzii 103855 0 1076 1 species Bordetella genomosp. 13 0 463040 228 species 1 Bordetella petrii 94624 0 744 1 species Bordetella genomosp. 9 1416803 0 672 species 1 0 463014 Bordetella flabilis 1 species 395 115 species 1 Bordetella pertussis 0 520 0 521 Bordetella avium 1 species 431 0 1472344 690 1 genus 690 species 1 Basilea psittacipulmonis 0 1472345 Castellaniella 1 359336 0 561 6 genus 2 555 species 1 Castellaniella defragrans 0 75697 Alcaligenes 507 1 0 10 1487 2 genus Alcaligenes faecalis 0 511 1477 1 species 13500 no rank 2 80841 0 Burkholderiales bacterium YL45 0 1834205 13209 1 species 291 1 species Burkholderiales bacterium GJ-E10 0 1469502 3075 4 class 580370 0 order 4 3075 1 580371 1 0 Mariprofundales Mariprofundaceae 580372 1 0 3074 2 3 family 3072 genus 2 377315 0 1 species 1548 1921086 0 Mariprofundus aestuarium 1 species 1524 1921087 0 Mariprofundus ferrinatatus 0 2138240 phylum 1 639 639 1 class 0 2138243 0 2138246 639 order 1 0 2138247 639 family 1 1 genus 639 68335 0 Coprothermobacter proteolyticus 0 35786 639 1 species 981 phylum 4 0 68297 class 4 1 981 0 1 203486 Dictyoglomia Dictyoglomales 1 203487 0 19 980 3 order 961 2 family 203488 0 0 13 genus 2 961 14 0 Dictyoglomus thermophilum species 1 831 1 species 130 0 513050 Dictyoglomus turgidum 0 2323 1274 no rank 2 2 clade 1274 1783234 0 95818 0 58 1 phylum 0 1895827 58 1 no rank 58 species 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 2056494 1 clade 1216 95901 0 1 class 1216 2497643 0 2497644 0 1216 order 1 1216 family 1 2497645 0 1216 genus 1 0 1551504 1 species 1216 0 673862 Candidatus Babela massiliensis 15 phylum 8886 1 57723 1 0 Acidobacteria 8511 235 12 class Acidobacteriia 0 204432 1 0 204433 1 Acidobacteriales 9 order 6286 25 8 family 7 6261 0 204434 1 Acidobacteriaceae 658061 1 0 Candidatus Koribacter genus 2 1181 1 Candidatus Koribacter versatilis 0 658062 1180 1 species 0 940557 genus 2 2910 species 1 570 940615 0 Granulicella tundricola 2340 1 species Granulicella mallensis 940614 0 1164 2 genus 0 392733 630 species 1 Terriglobus roseus 0 392734 1 species 534 870903 0 Terriglobus saanensis 999 1 genus 0 33973 species 1 999 33075 0 Acidobacterium capsulatum 37 1990 order 2 Solibacterales 332160 1 0 1953 family 1 332161 0 332162 0 1953 genus 1 Candidatus Solibacter usitatus 332163 0 1953 1 species 0 1 1562566 Blastocatellia class 2 6 374 368 genus 1 0 458032 Chloracidobacterium thermophilum 0 458033 368 1 species 0 2498710 clade 1 98 1 phylum 98 67814 0 693071 0 98 1 class 693072 0 order 1 98 98 family 1 693073 0 0 693074 98 genus 1 Caldisericum exile 0 693075 98 species 1 0 200938 2215 4 phylum 1 118001 0 Chrysiogenetes 4 class 2215 127 2088 3 order 0 189769 5 2088 family 3 Chrysiogenaceae 0 1 189770 2 genus 6 2083 393029 1 0 Desulfurispirillum Desulfurispirillum indicum 0 936456 2077 1 species 0 1783272 1574 clade 2459039 Firmicutes 0 1 1239 1646726 540 667 phylum Clostridia 186801 1 0 1211143 162 193 class order 1 254 0 485256 0 485255 1 family 254 0 375928 254 genus 1 1 species 254 0 375929 Natranaerobius thermophilus Thermoanaerobacterales 68295 1 0 117 18170 34 order 543372 1 0 Thermoanaerobacterales Family IV. Incertae Sedis family 2 349 8 1 genus 341 0 252965 0 252966 Mahella australiensis 1 species 341 276 1 family 0 227387 genus 1 276 0 227388 276 species 1 Thermodesulfobium narugense 0 184064 Thermoanaerobacteraceae 0 186814 1 10604 4 17 family 0 1 249529 Caldanaerobacter genus 2 5 280 911092 0 Caldanaerobacter subterraneus 1 species 275 42857 0 384 3 no rank 0 44260 genus 1 257 0 1525 Moorella thermoacetica 1 species 257 1 42837 0 Ammonifex 2 genus 4 127 123 1 species Ammonifex degensii 0 42838 1754 1 0 Thermoanaerobacter 9 genus 8183 730 2636821 0 no rank 2 1978 1 species 881 0 399726 Thermoanaerobacter sp. X514 1097 1 species Thermoanaerobacter sp. X513 573062 0 Thermoanaerobacter mathranii 0 583357 744 species 1 0 29323 Thermoanaerobacter brockii species 1 1122 Thermoanaerobacter italicus 0 108150 991 1 species 1 species 636 0 46354 Thermoanaerobacter wiegelii 860 species 1 Thermoanaerobacter kivui 0 2325 1 species 1122 0 496866 Thermoanaerobacter pseudethanolicus 383 genus 1 140458 0 Thermacetogenium phaeum 0 85874 383 species 1 1 genus 1370 129957 0 Carboxydothermus hydrogenoformans 0 129958 1370 1 species Thermoanaerobacterales Family III. Incertae Sedis 0 1 543371 30 6824 family 13 28895 1 0 Thermoanaerobacterium 3 genus 44 1524 796 species 1 Thermoanaerobacterium xylanolyticum 0 29329 684 species 1 Thermoanaerobacterium thermosaccharolyticum 0 1517 5270 69 genus 9 Caldicellulosiruptor 44000 1 0 0 52765 Caldicellulosiruptor kristjanssonii species 1 850 0 44001 Caldicellulosiruptor saccharolyticus species 1 953 species 1 877 0 52766 Caldicellulosiruptor lactoaceticus 0 31899 Caldicellulosiruptor bescii species 1 613 Caldicellulosiruptor obsidiansis 0 717609 740 species 1 0 413888 Caldicellulosiruptor hydrothermalis species 1 330 356 1 species Caldicellulosiruptor kronotskyensis 413889 0 482 1 species Caldicellulosiruptor owensensis 55205 0 2770089 0 order 3 1028 2770092 0 717 family 1 genus 1 717 0 499228 717 1 species Tepidanaerobacter acetatoxydans 499229 0 2770093 0 311 family 2 5 311 genus 2 Thermosediminibacter 0 1 291988 0 291990 Thermosediminibacter oceani species 1 306 3536 1189030 147 order Clostridiales 0 1 186802 family 9 28019 19 0 1 186804 Peptostreptococcaceae 1 genus 378 44259 0 species 1 378 143361 0 Filifactor alocis 0 1870884 1 Clostridioides 2 genus 23387 18 0 1496 Clostridioides difficile species 1 23369 608 70 2 genus Acetoanaerobium 0 1 186831 1 species 538 1511 0 Acetoanaerobium sticklandii 0 1849828 genus 1 1516 1505 0 Paeniclostridium sordellii species 1 1516 1481960 0 1280 genus 1 species 1 1280 0 1731 Peptoclostridium acidaminophilum 1411023 0 831 1 no rank 831 species 1 Peptostreptococcaceae bacterium oral taxon 929 0 2081703 15265 10 family 2304686 0 2304691 0 1089 1 genus 1510 0 [Clostridium] stercorarium species 1 1089 2304693 0 2279 1 genus [Clostridium] thermosuccinogenes 0 84032 2279 species 1 Ruminiclostridium 0 1 1508657 1002 30 genus 2 972 species 1 [Clostridium] cellulolyticum 0 1521 genus 3 5393 2304692 0 1 species 1719 0 1515 Ruminiclostridium thermocellum 1 species 2522 288965 0 [Clostridium] clariflavum species 1 1152 0 1677857 Herbivorax saccincola genus 1 1141 1637257 0 1 species 1141 0 884684 Mageeibacillus indolicus 2305130 0 4157 no rank 1 1 species 4157 1834198 0 Ruminiclostridium sp. KB18 236752 0 genus 1 204 204 species 1 Fastidiosipila sanguinis 236753 0 0 990719 2 family 4926 88 4926 genus 2 Christensenella 0 1 990721 Christensenella massiliensis 0 1805714 4838 species 1 538999 0 27329 no rank 8 family 1 795 539000 0 genus 1 795 73918 0 1 species 795 73919 0 Thermaerobacter marianensis 2 genus 104 6527 0 1392389 1 Intestinimonas 6423 1 species Intestinimonas butyriciproducens 1297617 0 1 3453 family 4 Clostridiales Family XIII. Incertae Sedis 543314 1 0 1 species 1762 0 143393 [Eubacterium] sulci Mogibacterium 0 86331 1 2 1690 2 genus 1 species 1688 0 114527 Mogibacterium diversum 2717089 0 16554 1 genus 2086584 0 Mordavella sp. Marseille-P3756 species 1 16554 1 186803 0 Lachnospiraceae family 26 564571 269 2719313 0 1 genus 71322 species 1 71322 208479 0 [Clostridium] bolteae 2569097 0 genus 1 41790 0 39488 [Eubacterium] hallii species 1 41790 3110 1 genus 2 Herbinix 0 1 1663717 3109 species 1 Herbinix luporum 1679721 0 1 572511 0 Blautia 3 genus 43279 66 no rank 1 22275 0 2648079 1 species 22275 0 1796616 Blautia sp. YL58 species 1 20938 1322 0 Blautia hansenii Anaerostipes 0 207244 1 4 97090 genus 2 Anaerostipes hadrus 0 649756 97086 1 species 1 698776 0 Cellulosilyticum 2 genus 1 3265 species 1 3264 29360 0 Cellulosilyticum lentocellum genus 1 23255 2719231 0 [Clostridium] saccharolyticum 84030 0 23255 species 1 28050 0 29983 1 genus 39485 0 [Eubacterium] eligens species 1 29983 186928 0 2 no rank 72080 Lachnospiraceae bacterium oral taxon 500 712991 0 5797 1 species [Eubacterium] rectale 0 39491 66283 1 species 2931 1 genus 0 2039240 species 1 2931 0 28446 Anaerotignum propionicum 2 genus 17 88821 0 841 1 Roseburia species 1 88804 0 301301 Roseburia hominis 3 genus 7 23173 0 830 1 Butyrivibrio Butyrivibrio proteoclasticus 0 43305 11941 1 species 11225 1 species Butyrivibrio hungatei 185008 0 genus 4 64203 137 1506553 1 0 Lachnoclostridium species 1 19069 0 1871021 Lachnoclostridium phocaeense 5265 1 species Lachnoclostridium phytofermentans 66219 0 39732 1 no rank 2608895 0 39732 1 species Lachnoclostridium sp. YL32 1834196 0 1 family 700 543349 0 700 1 genus 0 2733 0 2734 Symbiobacterium thermophilum 1 species 700 216572 0 4509 family 2 4509 5 2 genus Oscillibacter 0 459786 1 Oscillibacter valericigenes 0 351091 4504 1 species Peptococcaceae 186807 1 0 44 20781 27 family genus 1 625 2282742 0 0 58138 Desulfotomaculum acetoxidans species 1 625 0 471826 1 Candidatus Desulforudis genus 2 433 1 Candidatus Desulforudis audaxviator 0 471827 432 species 1 51514 0 1 genus 492 51515 0 Dehalobacterium formicoaceticum species 1 492 Desulfosporosinus 0 79206 1 2550 16 4 genus Desulfosporosinus acidiphilus 885581 0 897 1 species 436 species 1 Desulfosporosinus meridiei 79209 0 1201 species 1 Desulfosporosinus orientis 1563 0 0 1 36853 Desulfitobacterium 5 genus 20 4388 2649 species 1 Desulfitobacterium hafniense 0 49338 0 233055 Desulfitobacterium dichloroeliminans 1 species 951 142877 0 Desulfitobacterium metallireducens 1 species 294 Desulfitobacterium dehalogenans 36854 0 474 1 species Desulfotomaculum 0 1 1562 5689 20 genus 5 1565 0 Desulfotomaculum nigrificans 1 species 1178 2363 species 1 Desulfotomaculum ferrireducens 1833852 0 1564 0 Desulfotomaculum ruminis species 1 1070 1 species 1058 59610 0 Desulfotomaculum reducens 51196 0 1 genus 477 477 1 species Syntrophobotulus glycolicus 51197 0 88 4186 genus 4 Dehalobacter 1 56112 0 species 1 1043 55583 0 Dehalobacter restrictus 2 no rank 3055 0 2635733 species 1 1519 0 1147129 Dehalobacter sp. DCA 1536 species 1 Dehalobacter sp. CF 0 1131462 0 2282740 400 genus 1 1 species 400 0 102134 Desulfotomaculum gibsoniae 0 278993 1 Thermincola 2 genus 1 1497 species 1 1496 0 863643 Thermincola potens 53 435442 family 13 Ruminococcaceae 0 541000 1 552397 0 no rank 1 2265 2265 1 species [Clostridium] cellulosi 0 29343 14350 10 3 genus Ruminococcus 0 1 1263 6801 species 1 Ruminococcus albus 1264 0 7539 species 1 Ruminococcus bicirculans 0 1160721 0 2305133 1 no rank 2260 1572656 0 Ruminococcaceae bacterium CPB6 1 species 2260 genus 2 6896 12 0 946234 1 Flavonifractor 6884 species 1 Flavonifractor plautii 292800 0 407479 150 2 genus Faecalibacterium 0 216851 1 407329 1 species Faecalibacterium prausnitzii 0 853 Ethanoligenens 0 253238 1 3 2136 genus 2 Ethanoligenens harbinense 253239 0 2133 species 1 Herbivorax 0 1890281 3 1 genus Syntrophomonadaceae 0 68298 1 347 3 family 4 138 3 genus 2 Syntrophothermus 1 129001 0 Syntrophothermus lipocalidus 0 86170 135 1 species 206 genus 1 0 862 1 species 206 0 863 Syntrophomonas wolfei family 4 3 8129 186806 1 0 Eubacteriaceae 2 genus 7423 266 1 1730 0 Eubacterium 1 species 7157 0 1736 Eubacterium limosum 33951 0 1 genus 703 species 1 703 0 33952 Acetobacterium woodii family 38 104 74502 31979 1 0 Clostridiaceae 0 1 1485 Clostridium genus 30 67013 225 2976 1 species Clostridium cellulovorans 0 1493 Clostridium ljungdahlii 0 1538 1063 1 species 0 1216932 Clostridium bornimense species 1 1431 Clostridium pasteurianum 1501 0 2703 1 species 1708 species 1 Clostridium kluyveri 0 1534 1046 1 species Clostridium estertheticum 238834 0 species 1 2613 0 1502 Clostridium perfringens 1808 species 1 Clostridium cochlearium 1494 0 Clostridium formicaceticum 0 1497 1036 1 species species 1 1414 0 1519 Clostridium tyrobutyricum 0 29341 Clostridium argentinense species 1 1536 no rank 2 9309 0 2614128 Clostridium sp. BNL1100 755731 0 1685 species 1 Clostridium sp. SY8519 1042156 0 7624 species 1 46867 0 Clostridium chauvoei species 1 1568 1 species 2394 1492 0 Clostridium butyricum 1012 1 species Clostridium scatologenes 0 1548 1482 1 species Clostridium carboxidivorans 0 217159 84022 0 Clostridium aceticum 1 species 1355 0 1542 Clostridium novyi species 1 1263 Clostridium sporogenes 1509 0 1452 species 1 3390 1 species Clostridium tetani 1513 0 1 species 689 0 84023 Clostridium autoethanogenum 1431 1 species Clostridium acetobutylicum 0 1488 169679 0 Clostridium saccharobutylicum species 1 1466 Clostridium botulinum 0 1491 9687 species 1 Clostridium saccharoperbutylacetonicum 0 36745 2812 species 1 Clostridium taeniosporum 394958 0 1257 species 1 species 1 3457 0 1561 Clostridium baratii 3430 species 1 Clostridium beijerinckii 0 1520 Mordavella 0 1981033 44 1 genus 390805 0 1 genus 3130 3130 species 1 Geosporobacter ferrireducens 1424294 0 114627 0 2 genus 1944 Alkaliphilus oremlandii 461876 0 1085 species 1 0 208226 Alkaliphilus metalliredigens species 1 859 2267 genus 3 0 49082 2638829 0 3 no rank 2267 0 1041504 Candidatus Arthromitus sp. SFB-rat-Yit species 1 1191 604 species 1 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 0 472 1 species Candidatus Arthromitus sp. SFB-mouse 49118 0 31984 0 2 family 974 1 2697 0 Heliobacterium 2 genus 974 1 35701 0 Heliobacterium modesticaldum 1 species 973 1 53433 0 Halanaerobiales 7 order 2499 2 972 0 family 4 1203 25 632 3 genus Halanaerobium 1 2330 0 331 species 1 Halanaerobium praevalens 2331 0 Halanaerobium hydrogeniformans 0 656519 276 1 species 0 32636 1 genus 571 0 31909 Halothermothrix orenii species 1 571 2 family 1294 0 53434 483 genus 1 42417 0 species 1 483 0 42422 Halobacteroides halobius 28186 0 811 1 genus 1 species 811 0 28187 Acetohalobium arabaticum 33974 0 298 no rank 1 genus 1 298 1930845 0 298 species 1 Ndongobacter massiliensis 0 1871025 no rank 1 1576 84086 0 endosymbiont 'TC1' of Trimyema compressum 243899 0 1576 1 species 0 1737404 8089 13 class 159 2 no rank 0 1737407 1582879 1 0 Ezakiella genus 2 159 2 Ezakiella massiliensis 1852374 0 157 species 1 order 11 7930 175 0 1 1737405 Tissierellales Peptoniphilaceae 1570339 1 0 1088 7219 8 family genus 1 380 0 543311 1 species 380 0 33033 Parvimonas micra Anaerococcus 1 165779 0 2359 7 3 genus species 1 566 0 1870984 Anaerococcus mediterraneensis species 1 1786 33034 0 Anaerococcus prevotii 0 1161127 1640 genus 1 Murdochiella vaginalis 1852373 0 1640 1 species 1 genus 907 162289 0 2637196 0 907 no rank 1 species 1 907 1912856 0 Peptoniphilus sp. ING2-D1G 150022 0 845 1 genus 1260 0 Finegoldia magna species 1 845 family 2 536 2042895 0 Gottschalkia 0 1 1505664 1 536 genus 2 Gottschalkia acidurici 0 1556 535 species 1 0 526524 10315 class 8 10315 order 8 0 526525 0 1 128827 Erysipelotrichaceae 8 family 76 10315 1 2848 genus 2 Faecalibaculum 0 1 1729679 2847 1 species Faecalibaculum rodentium 0 1702221 4910 1 no rank 0 544447 1834207 0 Erysipelotrichaceae bacterium I46 species 1 4910 0 1 1647 Erysipelothrix genus 3 1003 7 Erysipelothrix rhusiopathiae 1648 0 460 1 species Erysipelothrix larvae 1514105 0 536 species 1 genus 1 1478 191303 0 2638206 0 1478 1 no rank 0 1712675 Turicibacter sp. H121 species 1 1478 725 3 4 class Limnochordia 1676648 1 0 Limnochordales 0 1 1676649 6 722 order 3 2 family 716 0 1676650 Limnochorda 0 1676651 1 716 2 2 genus 1555112 0 Limnochorda pilosa species 1 714 Bacilli 1 91061 0 509 385453 class 418 258 order 226300 479 0 1385 1 Bacillales 92332 313 115 family Bacillaceae 0 1 186817 0 1 129337 Geobacillus genus 15 7220 449 Geobacillus genomosp. 3 1921421 0 139 species 1 2642459 0 1979 no rank 6 Geobacillus sp. Y412MC52 0 550542 328 1 species 551 1 species Geobacillus sp. Y4.1MC1 581103 0 420 1 species Geobacillus sp. WCH70 0 471223 55 species 1 Geobacillus sp. GHH01 1233873 0 Geobacillus sp. Y412MC61 0 544556 573 1 species 52 species 1 Geobacillus sp. C56-T3 691437 0 0 129338 Geobacillus subterraneus species 1 142 0 1505648 1809 4 species group 101 1 species Geobacillus thermocatenulatus 0 33938 1 species 771 169283 0 Geobacillus lituanicus 65 1 species Geobacillus kaustophilus 1462 0 872 species 1 Geobacillus thermoleovorans 33941 0 0 33940 Geobacillus thermodenitrificans species 1 1631 Geobacillus stearothermophilus 0 1422 1071 species 1 6 genus 2365 2 150247 1 0 Anoxybacillus 33934 0 Anoxybacillus flavithermus 1 species 1199 no rank 2 361 0 2639704 Anoxybacillus sp. B2M1 0 1490052 207 species 1 154 1 species Anoxybacillus sp. B7M1 1490057 0 species 1 571 294699 0 Anoxybacillus amylolyticus Anoxybacillus gonensis 198467 0 232 species 1 0 1055323 genus 1 728 Aeribacillus pallidus 33936 0 728 1 species genus 7 3117 12 0 84406 1 Virgibacillus 1 species 222 1473 0 Virgibacillus pantothenticus Virgibacillus halodenitrificans 1482 0 615 1 species 328 species 1 Virgibacillus necropolis 0 163877 Virgibacillus phasianinus 0 2017483 749 species 1 no rank 2 1191 2620237 0 419 species 1 Virgibacillus sp. SK37 0 403957 772 1 species Virgibacillus sp. 6R 1911587 0 55054 2223 58 genus Bacillus 0 1386 1 16410 species group 10 0 86661 515 species 1 Bacillus bombysepticus 0 658666 Bacillus cereus 1396 0 6565 species 1 Bacillus anthracis 1392 0 196 1 species 566 1 species Bacillus toyonensis 0 155322 Bacillus cytotoxicus 0 580165 826 1 species 3 no rank 1777 0 2750818 1839798 0 Bacillus sp. FDAARGOS_235 1 species 591 422 species 1 Bacillus sp. HBCD-sjtu 0 2053832 Bacillus sp. ABP14 1892404 0 764 species 1 Bacillus mycoides 0 1405 1301 species 1 Bacillus thuringiensis 1428 0 4664 1 species 1408 0 Bacillus pumilus species 1 3301 Bacillus smithii 1479 0 356 species 1 Bacillus endophyticus 135735 0 1138 1 species Bacillus aryabhattai 412384 0 839 species 1 species 1 281 0 632773 Bacillus beveridgei Bacillus xiamenensis 0 1178537 375 1 species species 1 892 561879 0 Bacillus safensis 19 no rank 7890 0 185979 925 1 species Bacillus sp. SDLI1 0 1774743 species 1 44 0 1570330 Bacillus sp. BH072 1013 species 1 Bacillus sp. 1s-1 2026248 0 698 1 species Bacillus sp. 1NLA3E 0 666686 1127744 0 Bacillus sp. JS species 1 214 1574141 0 Bacillus sp. YP1 1 species 85 151 species 1 Bacillus sp. SJ-10 0 563169 0 1565991 Bacillus sp. X1(2014) 1 species 509 2049935 0 Bacillus sp. Lzh-5 1 species 39 Bacillus sp. MD-5 0 2009331 191 1 species Bacillus sp. FJAT-14266 0 1837130 1252 1 species 1 species 76 1409 0 Bacillus sp. (in: Bacteria) Bacillus sp. 275 1941347 0 178 species 1 Bacillus sp. WP8 0 756828 365 species 1 0 98228 Bacillus sp. OxB-1 1 species 509 0 1856406 Bacillus sp. H15-1 1 species 1013 174 species 1 Bacillus sp. Pc3 0 1446792 1 species 407 1827146 0 Bacillus sp. IHB B 7164 47 1 species Bacillus sp. LM 4-2 1628753 0 382 species 1 Bacillus methanolicus 0 1471 species 1 381 1547283 0 Bacillus weihaiensis 648 1 species Bacillus glycinifermentans 1664069 0 931 species 1 Bacillus cohnii 33932 0 Bacillus cellulosilyticus 0 1413 285 1 species 1 species group 434 0 1792192 1 species 434 0 293387 Bacillus altitudinis 100 species 1 Bacillus gibsonii 0 79881 species 1 2081 1404 0 Bacillus megaterium 1 species 783 79883 0 Bacillus horikoshii 596 1 species Bacillus flexus 0 86664 0 653685 12259 9 species group species 1 797 0 1452 Bacillus atrophaeus 1 species 4019 1423 0 Bacillus subtilis 3650 species subgroup 3 0 1938374 580 species 1 Bacillus velezensis 492670 0 1 species 2144 0 1390 Bacillus amyloliquefaciens 659243 0 Bacillus siamensis 1 species 926 1 species 1837 1648923 0 Bacillus paralicheniformis 1 species 826 119858 0 Bacillus sonorensis Bacillus vallismortis 72361 0 30 1 species Bacillus licheniformis 1402 0 1100 species 1 622 species 1 Bacillus infantis 0 324767 1847 1 species Bacillus coagulans 1398 0 Fictibacillus 1 1329200 0 1 2151 3 genus species 1 1896 255247 0 Fictibacillus arsenicus 254 1 species Fictibacillus phosphorivorans 0 1221500 4047 genus 2 2675229 0 Bacillus simplex 1478 0 3794 species 1 1 species 253 264697 0 Bacillus muralis Oceanobacillus 0 182709 1 1420 1 genus 2 species 1 1419 182710 0 Oceanobacillus iheyensis 1493 2 genus 0 2675230 species 1 328 0 859143 Bacillus kochii 0 665099 Bacillus oceanisediminis 1 species 1165 genus 1 808 29331 0 1449 0 Amphibacillus xylanus 1 species 808 45667 0 1365 genus 2 1 species 512 0 1570 Halobacillus halophilus species 1 853 402384 0 Halobacillus mangrovi 1087 genus 1 0 175304 1 species 1087 0 1472767 Lentibacillus amyloliquefaciens 0 2675234 4015 5 genus 744 species 1 Bacillus krulwichiae 199441 0 Bacillus clausii 0 79880 1547 1 species 0 86665 Bacillus halodurans 1 species 613 724 1 species Bacillus pseudofirmus 0 79885 300825 0 Bacillus lehensis 1 species 387 3674 11 genus 5 Lysinibacillus 0 1 400634 2636778 0 714 no rank 1 0 2072025 Lysinibacillus sp. YS11 species 1 714 0 1145276 Lysinibacillus varians 1 species 850 1305 1 species Lysinibacillus sphaericus 0 1421 794 1 species Lysinibacillus fusiformis 28031 0 genus 1 319 0 459532 0 586416 Terribacillus aidingensis species 1 319 2412 genus 1 351195 0 0 1230341 Salimicrobium jeotgali 1 species 2412 genus 2 744 1 1 1906945 0 Parageobacillus Parageobacillus thermoglucosidasius 0 1426 743 species 1 186824 0 family 3 557 1 1677050 0 Novibacillus genus 2 554 7 Novibacillus thermophilus 0 1471761 547 1 species 292635 0 Laceyella 1 genus 3 Staphylococcaceae 1 90964 0 468 23667 40 family genus 33 173 20800 1279 1 0 Staphylococcus species 1 428 308354 0 Staphylococcus simiae 1 species 149 0 61015 Staphylococcus succinus 70258 0 Staphylococcus piscifermentans species 1 608 796 1 species Staphylococcus saprophyticus 0 29385 1238 species 1 Staphylococcus epidermidis 1282 0 29388 0 Staphylococcus capitis 1 species 185 1 species 141 0 155085 Staphylococcus lutrae 0 91994 267 no rank 1 0 1715860 Staphylococcus sp. AntiMn-1 1 species 267 484 1 species Staphylococcus lugdunensis 28035 0 1296 0 Staphylococcus sciuri species 1 177 246432 0 Staphylococcus equorum species 1 361 1280 0 Staphylococcus aureus 1 species 2711 1288 0 Staphylococcus xylosus 1 species 968 Staphylococcus hyicus 0 1284 204 1 species species 1 824 283734 0 Staphylococcus pseudintermedius 0 29382 Staphylococcus cohnii species 1 479 Staphylococcus warneri 0 1292 638 1 species 985762 0 Staphylococcus agnetis 1 species 589 177 species 1 Staphylococcus pettenkoferi 170573 0 Staphylococcus kloosii 0 29384 253 1 species 199 species 1 Staphylococcus stepanovicii 643214 0 Staphylococcus argenteus 0 985002 216 1 species 108 1 species Staphylococcus muscae 1294 0 Staphylococcus haemolyticus 0 1283 2552 1 species Staphylococcus schleiferi 1295 0 941 species 1 Staphylococcus nepalensis 214473 0 604 1 species 1 species 991 0 70255 Staphylococcus condimenti Staphylococcus felis 46127 0 343 1 species 401 1 species Staphylococcus carnosus 1281 0 0 45972 Staphylococcus pasteuri species 1 1456 species 1 629 0 1286 Staphylococcus simulans 1290 0 Staphylococcus hominis species 1 510 2005363 0 124 1 genus 124 species 1 Auricoccus indicus 1849491 0 Macrococcus 0 1 69965 1287 2 genus 4 408 1 species Macrococcus caseolyticus 0 69966 0 1855823 Macrococcus canis species 1 562 0 2619255 315 1 no rank species 1 315 0 1898474 Macrococcus sp. IME1552 0 45669 988 genus 1 Salinicoccus halodurans 0 407035 988 species 1 186821 0 1298 1 family no rank 1 1298 0 663587 1298 1 species [Bacillus] selenitireducens 85683 0 Alicyclobacillaceae 186823 1 0 18 4574 family 9 0 1 1129704 Kyrpidia genus 3 723 9 211 species 1 Kyrpidia tusciae 0 33943 Kyrpidia sp. EA-1 2055160 0 503 1 species 0 432330 1 Tumebacillus 3 genus 2697 96 1903704 0 Tumebacillus avium 1 species 1156 1214604 0 Tumebacillus algifaecis 1 species 1445 2 1136 genus 2 Alicyclobacillus 1 29330 0 1 species 1134 405212 0 Alicyclobacillus acidocaldarius 8227 no rank 8 0 539002 805 no rank 1 539738 0 0 1378 805 1 genus 2624949 0 no rank 1 805 805 1 species Gemella sp. oral taxon 928 1785995 0 7422 no rank 7 0 539742 7422 71 7 genus Exiguobacterium 0 33986 1 no rank 4 6333 0 2644629 1 species 2542 0 1849031 Exiguobacterium sp. U13-1 0 1224749 Exiguobacterium sp. ZWU0009 1 species 1956 Exiguobacterium sp. AT1b 0 360911 722 1 species 1113 species 1 Exiguobacterium sp. MH3 1399115 0 species 1 582 132920 0 Exiguobacterium antarcticum 332410 0 Exiguobacterium sibiricum 1 species 436 8 family 5120 3 1 186820 0 Listeriaceae Listeria 0 1637 1 4846 13 6 genus 0 1639 Listeria monocytogenes 1 species 1054 1488 species 1 Listeria seeligeri 1640 0 Listeria welshimeri 0 1643 946 1 species 590 species 1 Listeria ivanovii 1638 0 Listeria innocua 0 1642 755 1 species 271 genus 1 0 2755 0 2756 Brochothrix thermosphacta species 1 271 Planococcaceae 186818 1 0 34 16088 27 family Solibacillus 0 648800 1 2277 9 genus 3 1698 1 species Solibacillus silvestris 0 76853 2637870 0 no rank 1 570 Solibacillus sp. R5-41 2048654 0 570 1 species 500 7 2 genus Kurthia 0 1649 1 0 2644826 no rank 1 493 species 1 493 0 1750719 Kurthia sp. 11kri321 0 648802 1 Rummeliibacillus 2 genus 583 1 241244 0 Rummeliibacillus stabekisii species 1 582 1569 1 0 Sporosarcina genus 5 4167 2 0 1571 Sporosarcina ureae species 1 1369 724 1 species Sporosarcina psychrophila 1476 0 0 2647733 2072 no rank 2 1008 species 1 Sporosarcina sp. P37 1930546 0 species 1 1064 1930764 0 Sporosarcina sp. P33 424 1 genus 2 Jeotgalibacillus 0 1 157226 Jeotgalibacillus malaysiensis 0 1508404 423 1 species 61 8103 12 genus Planococcus 0 1 1372 Planococcus halocryophilus 1215089 0 331 species 1 1340 no rank 2 0 2662419 species 1 1139 0 2058136 Planococcus sp. MB-3u-03 201 1 species Planococcus sp. PAMC 21323 0 1526927 Planococcus antarcticus 161360 0 469 species 1 Planococcus donghaensis 0 414778 766 species 1 0 1598147 Planococcus faecalis 1 species 1607 1 species 237 0 1038856 Planococcus plakortidis 1 species 921 0 200991 Planococcus rifietoensis 105 species 1 Planococcus sp. L10.15 0 1302659 1374 0 Planococcus kocurii species 1 1491 775 species 1 Planococcus maritimus 0 192421 Paenibacillaceae 1 186822 0 154 73958 46 family 3 no rank 3132 85151 0 3132 3 genus 3 Aneurinibacillus 1 55079 0 no rank 1 2652 0 2642329 0 1450761 Aneurinibacillus sp. XH2 1 species 2652 477 species 1 Aneurinibacillus soli 0 1500254 5 4099 4 genus Brevibacillus 1 55080 0 1584 1 species Brevibacillus laterosporus 1465 0 species 1 1669 1393 0 Brevibacillus brevis 841 species 1 Brevibacillus formosus 54913 0 1781 65476 36 genus Paenibacillus 44249 1 0 Paenibacillus peoriae 59893 0 644 1 species 1104 1 species Paenibacillus mucilaginosus 0 61624 species group 1 6086 0 2044880 species 1 6086 0 483937 Paenibacillus riograndensis 1594 1 species Paenibacillus bovis 0 1616788 528191 0 Paenibacillus xylanexedens 1 species 1289 2533 1 species Paenibacillus borealis 160799 0 725 species 1 Paenibacillus swuensis 0 1178515 1406 0 Paenibacillus polymyxa 1 species 4567 905 1 species Paenibacillus stellifer 169760 0 1462996 0 Paenibacillus yonginensis species 1 2864 2090 1 species Paenibacillus sabinae 0 365617 172713 0 Paenibacillus kribbensis species 1 1390 Paenibacillus donghaensis 0 414771 1731 1 species species 1 977 0 162209 Paenibacillus naphthalenovorans 0 185978 13 no rank 21465 1 species 699 1566358 0 Paenibacillus sp. IHBB 10380 Paenibacillus sp. FSL H7-0357 1536774 0 882 species 1 0 1536770 Paenibacillus sp. FSL R5-0345 species 1 1736 1 species 3128 0 1536769 Paenibacillus sp. FSL P4-0081 1536771 0 Paenibacillus sp. FSL R5-0912 species 1 3951 1617 1 species Paenibacillus sp. lzh-N1 2069255 0 1279 species 1 Paenibacillus sp. Y412MC10 0 481743 species 1 1179 0 1536775 Paenibacillus sp. FSL H7-0737 species 1 1869 324057 0 Paenibacillus sp. JDR-2 355 species 1 Paenibacillus sp. 32O-W 1695218 0 1536773 0 Paenibacillus sp. FSL R7-0331 1 species 2146 1536772 0 Paenibacillus sp. FSL R7-0273 species 1 1665 959 species 1 Paenibacillus sp. BIHB4019 1870819 0 189425 0 Paenibacillus graminis species 1 4382 1242 1 species Paenibacillus durus 0 44251 0 1126833 Paenibacillus beijingensis 1 species 623 1763538 0 Paenibacillus crassostreae species 1 1864 Paenibacillus ihbetae 1870820 0 2446 species 1 636 species 1 Paenibacillus terrae 0 159743 1251 1 species Paenibacillus odorifer 189426 0 1 species 1287 1464 0 Paenibacillus larvae genus 2 1097 3 76632 1 0 Thermobacillus 1 species 1094 0 377615 Thermobacillus composti 159 order 158644 825 0 1 186826 Lactobacillales family 17 6610 2 0 1 81850 Leuconostocaceae 505 genus 1 46254 0 species 1 505 1247 0 Oenococcus oeni 5 1979 6 genus Weissella 0 1 46255 Weissella ceti 759620 0 494 1 species Weissella paramesenteroides 0 1249 617 species 1 Weissella koreensis 165096 0 134 1 species Weissella jogaejeotgali 0 1631871 145 species 1 species 1 584 137591 0 Weissella cibaria Leuconostoc 1243 1 0 4124 20 9 genus Leuconostoc citreum 0 33964 365 1 species Leuconostoc lactis 1246 0 91 species 1 136609 0 Leuconostoc kimchii species 1 2031 species 1 391 1245 0 Leuconostoc mesenteroides 255248 0 Leuconostoc garlicum species 1 88 1244 0 Leuconostoc gelidum species 1 113 876 1 no rank 2685106 0 979982 0 Leuconostoc sp. C2 species 1 876 Leuconostoc carnosum 0 1252 149 species 1 Lactobacillaceae 0 1 33958 79 47145 family 58 genus 3 3850 0 2767893 1196 1 species Lactobacillus parabuchneri 152331 0 1766 species 1 Lactobacillus curieae 0 1138822 Lactobacillus buchneri 1581 0 888 species 1 2767885 0 731 2 genus 0 28038 Lactobacillus curvatus species 1 290 Lactobacillus sakei 0 1599 441 1 species 2554 3 genus 2742598 0 Lactobacillus reuteri 0 1598 1234 1 species Lactobacillus fermentum 1613 0 263 species 1 Lactobacillus mucosae 0 97478 1057 species 1 5334 4 genus 2767887 0 1623 0 Lactobacillus ruminis 1 species 1811 671 species 1 Lactobacillus acidipiscis 0 89059 Lactobacillus agilis 0 1601 645 1 species 1624 0 Lactobacillus salivarius 1 species 2207 0 2767892 1 genus 1466 1466 1 species Lactobacillus paracollinoides 0 240427 0 2767889 2 genus 1466 1171 species 1 Lactobacillus backii 375175 0 0 1610 Lactobacillus coryniformis 1 species 295 2767876 0 genus 1 315 Lactobacillus amylophilus 1603 0 315 species 1 2759736 0 5123 3 genus Lactobacillus paracasei 0 1597 1415 species 1 1582 0 Lactobacillus casei 1 species 1561 0 47715 Lactobacillus rhamnosus species 1 2147 6 genus 10 2399 1 1253 0 Pediococcus 1 species 238 0 51663 Pediococcus damnosus species 1 1389 1255 0 Pediococcus pentosaceus Pediococcus claussenii 187452 0 213 1 species 327 1 species Pediococcus inopinatus 114090 0 species group 1 222 1670797 0 1 species 222 1254 0 Pediococcus acidilactici genus 1 453 0 2767877 0 148814 Lactobacillus kunkeei 1 species 453 2767890 0 genus 1 77 77 species 1 Lactobacillus hokkaidonensis 1193095 0 3 genus 2000 2767886 0 species 1 165 0 637971 Lactobacillus koreensis Lactobacillus brevis 0 1580 1669 species 1 166 species 1 Lactobacillus zymae 0 267363 Lactobacillus 0 1578 1 593 12617 genus 16 0 2620435 1928 no rank 4 2099789 0 Lactobacillus sp. CBA3606 species 1 134 1260 species 1 Lactobacillus sp. wkB8 1545702 0 302 1 species Lactobacillus sp. D1501 2108362 0 Lactobacillus sp. CBA3605 2099788 0 232 species 1 Lactobacillus gasseri 1596 0 489 species 1 1302 1 species Lactobacillus amylovorus 1604 0 1 species 1898 1579 0 Lactobacillus acidophilus 367 species 1 Lactobacillus helveticus 0 1587 0 83683 Lactobacillus amylolyticus species 1 809 Lactobacillus kefiranofaciens 267818 0 1332 1 species 1 species 1403 33959 0 Lactobacillus johnsonii 0 52242 Lactobacillus gallinarum 1 species 262 species 1 1686 1584 0 Lactobacillus delbrueckii species 1 227 0 1600 Lactobacillus acetotolerans species 1 321 109790 0 Lactobacillus jensenii 296 genus 2 0 2767881 1625 0 Lactobacillus sanfranciscensis 1 species 203 1 species 93 53444 0 Lactobacillus lindneri 2767879 0 5487 6 genus 217 species 1 Lactobacillus heilongjiangensis 1074467 0 0 1612 Lactobacillus farciminis 1 species 761 418 species 1 Lactobacillus allii 1847728 0 1 species 294 0 1007676 Lactobacillus ginsenosidimutans 0 392416 Lactobacillus crustorum 1 species 561 3236 1 species Lactobacillus alimentarius 0 1602 2898 genus 3 0 2767842 0 60520 Lactobacillus paraplantarum 1 species 128 Lactobacillus pentosus 1589 0 1542 species 1 1 species 1228 1590 0 Lactobacillus plantarum Streptococcaceae 0 1300 1 879 69952 49 family Lactococcus 0 1357 1 8 4448 genus 5 742 species 1 Lactococcus garvieae 0 1363 1 species 414 0 1366 Lactococcus raffinolactis 3108 1 species Lactococcus lactis 1358 0 Lactococcus piscium 0 1364 176 1 species Streptococcus 0 1 1301 1030 64625 genus 43 1335 0 Streptococcus equinus 1 species 544 1314 0 Streptococcus pyogenes species 1 951 4297 1 species Streptococcus suis 0 1307 0 1349 Streptococcus uberis 1 species 780 4384 species 1 Streptococcus pneumoniae 0 1313 Streptococcus lutetiensis 0 150055 1971 1 species 1332 species 1 Streptococcus agalactiae 0 1311 Streptococcus parauberis 1348 0 1166 1 species Streptococcus gordonii 1302 0 3366 1 species 377 1 species Streptococcus pantholopis 0 1811193 1499 1 species Streptococcus infantarius 0 102684 Streptococcus halotolerans 0 1814128 501 1 species Streptococcus pseudopneumoniae 257758 0 492 species 1 490 1 species Streptococcus iniae 0 1346 Streptococcus pasteurianus 197614 0 1011 species 1 Streptococcus marmotae 0 1825069 576 1 species no rank 7 4216 0 2608887 712633 0 Streptococcus sp. oral taxon 431 1 species 345 1 species 1046 0 1156431 Streptococcus sp. I-G2 588 species 1 Streptococcus sp. A12 0 1759399 1 species 710 0 1839799 Streptococcus sp. FDAARGOS_192 0 1319 Streptococcus sp. 'group B' 1 species 299 1902136 0 Streptococcus sp. NPS 308 species 1 400 828 1 species Streptococcus sp. I-P16 1156433 0 Streptococcus sanguinis 1305 0 871 1 species 1 species 1612 1304 0 Streptococcus salivarius 1 species 1410 0 1308 Streptococcus thermophilus 1247 species 1 Streptococcus parasanguinis 0 1318 Streptococcus pluranimalium 0 82348 1033 1 species 1 species 4549 0 28037 Streptococcus mitis 0 1309 Streptococcus mutans species 1 1353 1 species 1264 0 400065 Streptococcus merionis 45634 0 Streptococcus cristatus 1 species 1422 Streptococcus gallolyticus 0 315405 1863 species 1 0 59310 Streptococcus macedonicus 1 species 257 3203 species 1 Streptococcus oralis 0 1303 species 1 1497 0 1326 Streptococcus acidominimus 671232 0 species group 3 11337 species 1 8827 1328 0 Streptococcus anginosus 920 1 species Streptococcus intermedius 1338 0 1 species 1590 76860 0 Streptococcus constellatus species group 2 1997 0 119603 1 species 1095 1334 0 Streptococcus dysgalactiae 902 1 species Streptococcus equi 1336 0 species 1 727 0 1888195 Streptococcus himalayensis family 7 3766 0 186827 Aerococcus 1 1375 0 22 3766 7 genus 271 species 1 Aerococcus sanguinicola 119206 0 1 species 249 1376 0 Aerococcus urinae Aerococcus christensenii 87541 0 621 species 1 714 species 1 Aerococcus urinaehominis 0 128944 1 species 188 1377 0 Aerococcus viridans Aerococcus urinaeequi 51665 0 1701 species 1 0 81852 1 Enterococcaceae 17 family 16 27330 0 2737 416 2 genus 160 1 species Vagococcus penaei 633807 0 0 519472 Vagococcus teuberi species 1 256 33969 0 1 genus 968 33970 0 Melissococcus plutonius 1 species 968 51668 0 genus 1 7282 51669 0 Tetragenococcus halophilus species 1 7282 1 1350 0 Enterococcus 12 genus 626 18648 7023 1 species Enterococcus faecium 0 1352 1228 1 species Enterococcus casseliflavus 0 37734 Enterococcus wangshanyuanii 2005703 0 267 species 1 0 2608891 2682 no rank 3 834 1 species Enterococcus sp. CR-Ec1 2057791 0 0 2060307 Enterococcus sp. FDAARGOS_375 species 1 1205 species 1 643 0 2060306 Enterococcus sp. FDAARGOS_163 1 species 1631 0 53346 Enterococcus mundtii 736 species 1 Enterococcus thailandicus 0 417368 Enterococcus hirae 0 1354 1114 1 species 1123 species 1 Enterococcus durans 53345 0 0 1351 Enterococcus faecalis species 1 2218 0 263855 403 1 no rank Lactobacillales bacterium 1993866 0 403 1 species 0 1 186828 Carnobacteriaceae 9 family 1 2613 genus 5 1460 2 0 2747 1 Carnobacterium 147709 0 Carnobacterium inhibens species 1 304 Carnobacterium maltaromaticum 2751 0 246 1 species 257487 0 908 2 no rank Carnobacterium sp. CP1 0 1564681 200 1 species 1 species 708 0 208596 Carnobacterium sp. 17-4 191769 0 genus 1 284 2632303 0 284 no rank 1 species 1 284 1911586 0 Marinilactibacillus sp. 15R 868 2 genus 1470540 0 2621505 0 1 no rank 661 species 1 661 1903686 0 Jeotgalibaca sp. PTS2502 Jeotgalibaca dankookensis 708126 0 207 species 1 28 class 28587 10 1 909932 0 Negativicutes 286 9846 10 order Veillonellales 0 1 1843489 0 1 31977 Veillonellaceae 9 family 9560 292 2 genus 1 325 0 909928 1 Negativicoccus 0 1702287 Negativicoccus massiliensis 1 species 324 0 906 1 Megasphaera 2 genus 44 6515 1 species 6471 907 0 Megasphaera elsdenii 0 39948 1 genus 758 Dialister pneumosintes 0 39950 758 1 species 2 1670 3 genus Veillonella 29465 1 0 248315 0 Veillonella rodentium species 1 567 Veillonella parvula 0 29466 1101 1 species 9 4056 5 order Acidaminococcales 0 1843488 1 909930 1 0 Acidaminococcaceae 4 family 7 4047 1 904 0 Acidaminococcus 3 genus 4040 12 905 0 Acidaminococcus fermentans species 1 2065 1963 1 species Acidaminococcus intestini 187327 0 36 14675 12 order Selenomonadales 1 909929 0 8 family 62 12625 1843491 1 0 Selenomonadaceae genus 6 34 9062 0 970 1 Selenomonas 0 69823 Selenomonas sputigena 1 species 877 Selenomonas ruminantium 0 971 4950 species 1 0 2637378 no rank 3 3201 0 713030 Selenomonas sp. oral taxon 136 species 1 481 Selenomonas sp. oral taxon 478 712538 0 1763 species 1 0 1884263 Selenomonas sp. oral taxon 920 species 1 957 158846 0 3501 1 genus 3501 species 1 Megamonas hypermegale 158847 0 1843490 0 family 3 2014 2014 6 3 genus Pelosinus 0 365348 1 1 species 1508 0 365349 Pelosinus fermentans 0 2629460 1 no rank 500 species 1 500 484770 0 Pelosinus sp. UFO1 60134 clade 136 1798711 0 phylum 136 60134 0 1117 1805 1 6 order Pleurocapsales 0 52604 1 1890498 0 family 3 341 Stanieria 0 102115 1 341 1 3 genus 209 1 no rank 2642663 0 209 species 1 Stanieria sp. NIES-3757 0 1807358 species 1 131 102116 0 Stanieria cyanosphaera 0 1890500 2 family 1463 Pleurocapsa 0 44474 1 1463 2 2 genus 1 species 1461 0 54308 Pleurocapsa minor 574 5 class 307596 0 0 1 307595 Gloeobacterales 5 order 141 574 1 433 4 family Gloeobacteraceae 0 1 1890422 Gloeobacter 33071 1 0 8 432 genus 3 1416614 0 Gloeobacter kilaueensis species 1 112 species 1 312 33072 0 Gloeobacter violaceus 171 22712 54 order Synechococcales 0 1890424 1 1 1890438 0 Leptolyngbyaceae family 6 6 3217 3211 6 5 genus Leptolyngbya 0 47251 1 1184 0 Leptolyngbya boryana species 1 1169 no rank 3 2036 0 2650499 0 1752064 Leptolyngbya sp. NIES-3755 1 species 525 97 species 1 Leptolyngbya sp. PCC 7376 111781 0 1414 1 species Leptolyngbya sp. O-77 0 1080068 12067 25 family 32 Synechococcaceae 1890426 1 0 Synechococcus 0 1 1129 10793 103 genus 26 32046 0 Synechococcus elongatus 1 species 82 no rank 23 10153 2626047 0 572 1 species Synechococcus sp. NIES-970 1827144 0 54 species 1 Synechococcus sp. SynAce01 1916956 0 Synechococcus sp. PCC 73109 0 374982 296 species 1 75 species 1 Synechococcus sp. PCC 7117 0 195498 96 1 species Synechococcus sp. PCC 7502 1173263 0 110 1 species Synechococcus sp. KORDI-49 0 585423 374981 0 Synechococcus sp. PCC 7003 1 species 91 1 species 405 0 64471 Synechococcus sp. CC9311 0 29410 Synechococcus sp. WH 8103 species 1 576 species 1 1874 321327 0 Synechococcus sp. JA-3-3Ab 1020 species 1 Synechococcus sp. WH 8102 0 84588 737 1 species Synechococcus sp. WH 8109 166314 0 1203 species 1 Synechococcus sp. JA-2-3B'a(2-13) 321332 0 413 species 1 Synechococcus sp. KORDI-52 585425 0 1 species 115 0 110662 Synechococcus sp. CC9605 1 species 359 195248 0 Synechococcus sp. PCC 8807 0 1280380 Synechococcus sp. KORDI-100 1 species 242 251 1 species Synechococcus sp. RCC307 316278 0 1 species 36 0 195253 Synechococcus sp. PCC 6312 1 species 51 32049 0 Synechococcus sp. PCC 7002 1 species 93 0 1350461 Synechococcus sp. UTEX 2973 Synechococcus sp. WH 7803 0 32051 550 1 species 0 316279 Synechococcus sp. CC9902 species 1 934 0 33070 Synechococcus lividus species 1 455 176 genus 1 0 13034 species 1 176 0 292566 Dactylococcopsis salina Cyanobium 0 167375 1 5 807 genus 3 134 species 1 Cyanobium gracile 59930 0 668 no rank 1 2627006 0 668 species 1 Cyanobium sp. NIES-981 0 1851505 266 1 genus 146785 0 Thermosynechococcus elongatus 146786 0 266 species 1 0 1890429 2 family 233 10 233 2 genus Acaryochloris 0 155977 1 155978 0 Acaryochloris marina species 1 223 2888 2 family 5 Prochloraceae 0 1 1213 4 genus 4 2886 1 1218 0 Prochlorococcus species 1 2077 1219 0 Prochlorococcus marinus 2627481 0 2 no rank 805 Prochlorococcus sp. MIT 0604 0 1501268 321 species 1 Prochlorococcus sp. MIT 0801 0 1501269 484 1 species 0 1 1890436 Pseudanabaenaceae family 2 133 1 1152 0 132 1 genus 132 1 no rank 0 2593292 1 species 132 82654 0 Pseudanabaena sp. PCC 7367 1890428 0 4 family 1193 Synechocystis 0 1142 1 15 1193 genus 4 2640012 0 no rank 3 1178 50 species 1 Synechocystis sp. PCC 6714 0 1147 species 1 564 0 2116702 Synechocystis sp. IPPAS B-1465 564 1 species Synechocystis sp. PCC 6803 1148 0 2 family 2810 0 2303730 0 1 170610 Halomicronema genus 2 2 2810 2808 species 1 Halomicronema hongdechloris 1209493 0 subclass 37 15629 0 1301283 20 order 9679 3 0 1118 1 Chroococcales 0 1 1890449 Microcystaceae family 4 470 1 11 469 genus 3 Microcystis 0 1 1125 2643300 0 1 no rank 143 Microcystis sp. MC19 0 1967666 143 1 species 0 1126 Microcystis aeruginosa species 1 315 6093 3 8 family Aphanothecaceae 1 1890450 0 92682 0 no rank 1 53 53 1 genus 0 76023 53 no rank 1 0 2632878 0 65093 Halothece sp. PCC 7418 1 species 53 0 1453359 1 genus 72 72 1 species Candidatus Atelocyanobacterium thalassa 713887 0 1194 genus 1 0 263510 0 2546360 1194 1 species Cyanothece sp. ATCC 51142 43989 0 1194 1 strain 0 2546365 2904 2 genus 2904 2 species 0 2546366 1 strain 1434 0 395962 Cyanothece sp. PCC 8802 1470 1 strain Cyanothece sp. PCC 8801 0 41431 1867 2 genus 28070 0 2546356 0 1 species 1693 1693 strain 1 Cyanothece sp. PCC 7424 0 65393 1 species 174 0 2546359 1 strain 174 497965 0 Cyanothece sp. PCC 7822 1 1890464 0 Chroococcaceae family 6 1677 2 genus 2 905 669357 0 905 2 no rank 2625037 0 0 1615909 Geminocystis sp. NIES-3708 1 species 258 647 species 1 Geminocystis sp. NIES-3709 0 1617448 684 1 genus 0 268175 1 no rank 684 0 2648896 Chondrocystis sp. NIES-4102 0 2005460 684 1 species genus 2 3 86 0 102231 1 Gloeocapsa 2623012 0 83 no rank 1 1 species 83 1173026 0 Gloeocapsa sp. PCC 7428 1436 1 family 0 1890452 102234 0 1436 1 genus Cyanobacterium aponinum 0 379064 1436 1 species Oscillatoriales 0 1 1150 26 5950 17 order 2798 1 family 4 Microcoleaceae 1 1892252 0 1 genus 227 1205 0 227 1 species Trichodesmium erythraeum 0 1206 0 44471 1 Microcoleus genus 2 2570 3 2567 1 no rank 0 2642155 Microcoleus sp. PCC 7113 1173027 0 2567 species 1 0 1 1892255 Gomontiellaceae 3 family 186 1 Crinalium 241421 1 0 185 2 genus 2 0 241425 Crinalium epipsammum species 1 183 1892251 1 0 Coleofasciculaceae 2 family 2 1285 1 genus 1283 0 63132 0 2648775 1283 no rank 1 Geitlerinema sp. PCC 7407 1173025 0 1283 1 species Cyanothecaceae 1 1892249 0 3 123 family 3 1 43988 0 Cyanothece genus 2 120 5 no rank 1 115 2649277 0 115 1 species Cyanothece sp. PCC 7425 0 395961 family 4 1 1532 0 1 1892254 Oscillatoriaceae 588 genus 2 0 1158 118323 0 Oscillatoria acuminata 1 species 451 Oscillatoria nigro-viridis 0 482564 137 1 species 943 1 genus 0 1155738 943 species 1 Moorea producens 1155739 0 4 order 1 1818 0 1890505 1 Chroococcidiopsidales family 3 1817 1 0 1 1890528 Chroococcidiopsidaceae Chroococcidiopsis 1 54298 0 3 1816 genus 2 Chroococcidiopsis thermalis 0 54299 1813 1 species 0 1161 1 Nostocales order 29 8 17268 0 1892263 886 family 1 1190 0 886 genus 1 886 no rank 1 0 494603 0 1752063 Fischerella sp. NIES-3754 1 species 886 2661849 0 5592 8 family 0 1 1186 Calothrix genus 8 5592 3 200 species 1 Calothrix parietina 32054 0 no rank 6 5389 0 2619626 Calothrix sp. NIES-3974 0 2005462 585 species 1 416 1 species Calothrix sp. NIES-4071 0 2005469 2005461 0 Calothrix sp. NIES-4101 species 1 1755 99598 0 Calothrix sp. PCC 7507 species 1 139 1 species 1526 1954171 0 Calothrix sp. NIES-2098 Calothrix sp. 336/3 1337936 0 968 1 species 1 1162 0 Nostocaceae 16 family 9299 4 6549 9 genus 10 Nostoc 1 1177 0 1 species 1909 0 1306274 Nostoc flagelliforme 0 272131 Nostoc punctiforme species 1 311 0 2593658 no rank 7 4320 Nostoc sp. PCC 7524 0 28072 958 1 species 1 species 589 1261031 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 species 186 1751286 0 Nostoc sp. NIES-3756 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1618022 587 1 species Nostoc sp. CENA543 1869241 0 772 1 species 1 species 1072 0 103690 Nostoc sp. PCC 7120 317936 0 Nostoc sp. PCC 7107 1 species 156 1388 genus 3 1163 0 2 no rank 1188 2619674 0 0 1647413 Anabaena sp. WA102 1 species 927 Anabaena sp. 90 0 46234 261 species 1 200 species 1 Anabaena cylindrica 0 1165 0 264688 genus 2 1358 0 1164 Trichormus azollae 1 species 817 541 species 1 Trichormus variabilis 264691 0 family 2 4 1075 1 1185 0 Rivulariaceae 0 373984 1 genus 1071 0 2676603 no rank 1 1071 0 373994 Rivularia sp. PCC 7116 species 1 1071 408 1 no rank 0 1219117 species 1 408 1940762 0 Nostocales cyanobacterium HT-58-2 1 no rank 328 0 1983111 328 species 1 cyanobacterium endosymbiont of Epithemia turgida 0 718217 phylum 33 10156 0 1297 33 class 10156 11 0 1 188787 Deinococci 15 order 4950 22 1 68933 0 Thermales 4928 25 14 family Thermaceae 0 188786 1 8 2878 8 genus Thermus 0 1 270 0 56957 Thermus oshimai species 1 550 species 1 1037 37636 0 Thermus scotoductus 1 species 64 271 0 Thermus aquaticus 0 56956 Thermus brockianus species 1 34 992 1 species Thermus thermophilus 274 0 0 2619321 88 no rank 1 1 species 88 1111069 0 Thermus sp. CCB_US3_UF1 Thermus parvatiensis 456163 0 105 species 1 1 186191 0 Marinithermus 2 genus 462 1 186192 0 Marinithermus hydrothermalis species 1 461 0 65551 1339 genus 2 Meiothermus silvanus 0 52022 593 1 species species 1 746 277 0 Meiothermus ruber 1 genus 224 0 208447 0 187137 Oceanithermus profundus 1 species 224 1000 order 2 0 2762275 Trueperaceae 0 1 332247 1000 1 family 2 999 1 genus 332248 0 1 species 999 332249 0 Truepera radiovictrix Deinococcales 0 118964 1 19 4195 15 order Deinococcaceae 0 183710 1 11 4176 family 14 0 1 1298 Deinococcus 13 genus 4165 465 Deinococcus proteolyticus 0 55148 665 species 1 1 species 131 0 432329 Deinococcus peraridilitoris 1 species 129 0 309887 Deinococcus maricopensis 0 1182571 Deinococcus swuensis 1 species 567 0 68909 Deinococcus geothermalis 1 species 85 363 species 1 Deinococcus deserti 0 310783 88 1 no rank 0 2623546 1 species 88 2080419 0 Deinococcus sp. NW-56 species 1 668 0 1299 Deinococcus radiodurans 105 species 1 Deinococcus actinosclerus 0 1768108 0 1182568 Deinococcus puniceus 1 species 132 Deinococcus gobiensis 0 502394 368 species 1 Deinococcus soli Cha et al. 2016 0 1309411 399 species 1 67819 0 218 2 phylum 0 1663419 class 2 218 Fimbriimonadales 0 1663425 1 218 1 2 order 1 family 217 1663426 0 1 genus 217 1005038 0 217 1 species Fimbriimonas ginsengisoli 0 1005039 0 1859062 no rank 1 405 405 genus 1 0 262406 166501 0 Thermobaculum terrenum species 1 405 544448 0 98 phylum 18580 2799557 0 1 no rank 621 1912503 0 genus 1 621 2624196 0 1 no rank 621 621 species 1 Candidatus Izimaplasma sp. HR1 1541959 0 38 17190 class 95 Mollicutes 1 31969 0 38 order 4 5091 1 186328 0 Entomoplasmatales 33925 0 family 13 1384 Mesoplasma 0 46239 1 12 1197 8 genus 0 138853 Mesoplasma lactucae 1 species 129 651 1 species Mesoplasma coleopterae 324078 0 2151 0 Mesoplasma florum species 1 106 Mesoplasma syrphidae 225999 0 102 species 1 216427 0 Mesoplasma chauliocola species 1 85 species 1 55 219745 0 Mesoplasma tabanidae 57 1 species Mesoplasma entomophilum 0 2149 3 187 5 genus Entomoplasma 0 1 46238 0 74700 Entomoplasma freundtii 1 species 24 1 species 58 81459 0 Entomoplasma melaleucae species 1 47 214888 0 Entomoplasma luminosum 0 215578 Entomoplasma somnilux 1 species 55 1 2131 0 Spiroplasmataceae family 24 3703 2 23 genus 3701 73 0 2132 1 Spiroplasma 1 species 43 0 216942 Spiroplasma litorale 216933 0 Spiroplasma chrysopicola species 1 186 species 1 440 216937 0 Spiroplasma floricola Spiroplasma clarkii 2139 0 399 species 1 1 species 65 0 216945 Spiroplasma syrphidicola 1 species 62 0 47834 Spiroplasma kunkelii species 1 80 216936 0 Spiroplasma diminutum species 1 71 0 216944 Spiroplasma sabaudiense 2133 0 Spiroplasma citri species 1 92 Spiroplasma culicicola 216935 0 86 1 species 38 1 species Spiroplasma apis 2137 0 1 species 149 0 1114980 Spiroplasma atrichopogonis species 1 86 0 2145 Spiroplasma taiwanense species 1 438 0 216938 Spiroplasma helicoides 0 216946 Spiroplasma turonicum 1 species 112 0 216934 Spiroplasma corruscae species 1 204 1 species 147 2144 0 Spiroplasma mirum Spiroplasma eriocheiris 315358 0 105 species 1 436 species 1 Spiroplasma monobiae 2136 0 1 species 87 362837 0 Spiroplasma cantharicola 2637901 0 302 no rank 2 species 1 151 1898044 0 Spiroplasma sp. TU-14 151 species 1 Spiroplasma sp. NBRC 100390 1914410 0 2085 1 0 Mycoplasmatales 43 order 9957 4 2092 1 0 Mycoplasmataceae family 42 16 9953 124 genus 2 2129 0 species 1 59 0 134821 Ureaplasma parvum 65 1 species Ureaplasma urealyticum 0 2130 0 2093 1 Mycoplasma genus 27 5988 15 Mycoplasma dispar 86660 0 56 species 1 0 2097 Mycoplasma genitalium species 1 50 species 1 17 0 171632 Mycoplasma ovis species 1 185 0 28227 Mycoplasma penetrans 0 50052 Mycoplasma crocodyli species 1 87 species 1 62 0 2123 Mycoplasma putrefaciens 28 1 species Mycoplasma pneumoniae 0 2104 2683645 0 111 1 no rank 0 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) species 1 111 Mycoplasma hyorhinis 0 2100 119 species 1 1156 species group 3 656088 0 Mycoplasma capricolum 0 2095 296 1 species species 1 131 2105 0 Mycoplasma leachii 2102 0 Mycoplasma mycoides 1 species 729 Mycoplasma haemofelis 29501 0 12 1 species 15 1 species Mycoplasma haemocanis 0 136241 Mycoplasma bovoculi 0 45362 38 species 1 Mycoplasma flocculare 0 2128 23 1 species 1 species 740 65123 0 Mycoplasma wenyonii species 1 123 0 2111 Mycoplasma arthritidis 1 species 50 0 984991 Mycoplasma parvum Mycoplasma hominis 0 2098 522 species 1 species 1 1103 2099 0 Mycoplasma hyopneumoniae Mycoplasma gallisepticum 2096 0 508 1 species Mycoplasma canadense 29554 0 50 1 species 1 species 68 51365 0 Mycoplasma yeatsii 832 species 1 Mycoplasma mobile 2118 0 0 57372 Mycoplasma suis species 1 18 3825 genus 12 2767358 0 163 species 1 Mycoplasma bovigenitalium 0 2112 species 1 63 0 29553 Mycoplasma bovirhinis 2094 0 Mycoplasma arginini 1 species 78 species 1 50 29555 0 Mycoplasma canis 2113 0 Mycoplasma californicum 1 species 199 1 species 100 2115 0 Mycoplasma fermentans 0 28903 Mycoplasma bovis species 1 1346 48003 0 Mycoplasma pullorum 1 species 43 1142 species 1 Mycoplasma agalactiae 0 2110 Mycoplasma synoviae 0 2109 25 species 1 0 2107 Mycoplasma pulmonis 1 species 476 140 species 1 Mycoplasma cynos 0 171284 2104 1 13 order Acholeplasmatales 1 186329 0 family 12 3 2103 0 2146 1 Acholeplasmataceae 2147 1 0 Acholeplasma genus 5 18 1394 0 61635 Acholeplasma brassicae 1 species 155 0 2148 Acholeplasma laidlawii species 1 538 1 species 273 0 38986 Acholeplasma palmae Acholeplasma oculi 35623 0 410 species 1 1 33926 0 Candidatus Phytoplasma 6 genus 706 3 3 species group 289 0 85620 0 202462 Maize bushy stunt phytoplasma species 1 86 1 species 132 229545 0 Aster yellows witches'-broom phytoplasma 71 1 species Onion yellows phytoplasma 100379 0 1 species group 74 85630 0 Candidatus Phytoplasma mali 0 37692 74 1 species 0 85632 1 species group 340 1 species 340 59748 0 Candidatus Phytoplasma australiense no rank 2 769 0 713063 1911683 0 Tenericutes bacterium MZ-XQ 1 species 162 Tenericutes bacterium MO-XQ 1911684 0 607 1 species 705794 12 phylum 604 Actinobacteria 201174 1 0 6 class 5 872 1 84995 0 Rubrobacteria Rubrobacterales 0 1 84996 14 867 order 5 family 4 2 853 84997 1 0 Rubrobacteraceae 3 genus 3 851 0 42255 1 Rubrobacter 212 species 1 Rubrobacter xylanophilus 0 49319 42256 0 Rubrobacter radiotolerans species 1 636 class 4 1318 0 84992 Acidimicrobiales 0 1 84993 1318 16 4 order 0 84994 1 Acidimicrobiaceae family 2 11 59 0 53634 genus 1 48 48 1 species Acidimicrobium ferrooxidans 0 53635 0 2448023 1 family 1243 0 682522 genus 1 1243 Ilumatobacter coccineus 0 467094 1243 1 species 1 84998 0 Coriobacteriia class 28 248 87321 Coriobacteriales 0 84999 1 118 72879 order 13 1 84107 0 Coriobacteriaceae 5 family 67132 200 genus 1 393 33870 0 393 species 1 Coriobacterium glomerans 0 33871 no rank 1 975 0 84113 1 species 975 1531429 0 Coriobacteriaceae bacterium 68-1-3 0 102106 1 Collinsella genus 2 9 65564 65555 1 species Collinsella aerofaciens 0 74426 Atopobiaceae 1643824 1 0 108 5629 family 7 873 genus 1 0 2767353 873 species 1 Atopobium parvulum 1382 0 1 genus 3 1380 0 Atopobium 11 4645 genus 4 Olsenella 0 133925 1 species 1 1437 133926 0 Olsenella uli Olsenella sp. Marseille-P2300 1805478 0 1497 1 species 1700 no rank 1 2638792 0 Olsenella sp. oral taxon 807 712411 0 1700 1 species 1643822 1 0 Eggerthellales 14 order 14194 444 0 1643826 1 Eggerthellaceae family 13 13750 1938 genus 1 1878 0 447020 0 446660 Adlercreutzia equolifaciens species 1 1878 84108 1 0 Slackia genus 2 901 1 1 species 900 0 84110 Slackia heliotrinireducens 1274 1 genus 0 1981050 1944646 0 Phoenicibacter massiliensis 1 species 1274 0 1 644652 Gordonibacter genus 3 2609 6 0 1841863 Gordonibacter massiliensis species 1 1351 1252 species 1 Gordonibacter urolithinfaciens 0 1335613 3 3570 3 genus Eggerthella 0 1 84111 1 no rank 1149 2648737 0 species 1 1149 0 502558 Eggerthella sp. YY7918 2418 1 species Eggerthella lenta 84112 0 1 genus 230 0 84162 84163 0 Cryptobacterium curtum species 1 230 79603 0 1350 genus 1 species 1 1350 0 79604 Denitrobacterium detoxificans 1752188 0 1255 no rank 4 Actinobacteria bacterium IMCC25003 0 1848255 122 species 1 0 1848755 Actinobacteria bacterium IMCC26077 species 1 198 Actinobacteria bacterium IMCC26103 0 1848756 69 species 1 1 species 866 0 1848754 Actinobacteria bacterium IMCC19121 4 class 485 1497346 0 485 9 4 order Solirubrobacterales 0 588673 1 3 476 3 family Conexibacteraceae 0 1 320583 191494 1 0 Conexibacter genus 2 4 473 1 species 469 0 191495 Conexibacter woesei 557 class 3113 614531 1 1760 0 Actinobacteria Micrococcales 85006 1 0 994 33582 order 127 577468 0 no rank 1 18 1 genus 18 2038 0 species 1 18 0 2039 Tropheryma whipplei 1 85020 0 Dermabacteraceae family 9 3179 6 2183 34 6 genus Brachybacterium 0 43668 1 1 no rank 75 2623841 0 1903186 0 Brachybacterium sp. P6-10-X1 1 species 75 species 1 89 0 43669 Brachybacterium faecium 1 species 1373 0 1331682 Brachybacterium ginsengisoli 525 species 1 Brachybacterium sp. VR2415 2017485 0 1 species 87 0 2017484 Brachybacterium sp. VM2412 1 genus 487 472568 0 species 1 487 472569 0 Devriesea agamarum 36739 0 503 1 genus 1 species 503 0 1630135 Dermabacter vaginalis 511 7 family 85021 0 0 53357 genus 1 70 species 1 70 53358 0 Intrasporangium calvum 0 1 53457 Janibacter 2 genus 1 81 Janibacter indicus 857417 0 80 species 1 267408 1 0 Arsenicicoccus 2 genus 2 62 0 2663846 1 no rank 60 species 1 60 0 1658671 Arsenicicoccus sp. oral taxon 190 Serinicoccus 265976 1 0 298 57 genus 2 241 1 species Serinicoccus sp. JLT9 0 1758689 145357 0 family 6 440 125 2 2 genus Dermacoccus 1 57495 0 1 species 123 1274 0 Dermacoccus nishinomiyaensis Kytococcus 57499 1 0 87 4 genus 2 83 species 1 Kytococcus sedentarius 0 1276 745364 1 0 Luteipulveratus genus 2 1 228 1 species 227 571913 0 Luteipulveratus mongoliensis 3 family 5 1113 85022 1 0 Jonesiaceae Jonesia 1 43673 0 1108 76 genus 2 43674 0 Jonesia denitrificans species 1 1032 608 family 2 0 85019 2 genus 608 3 0 1 1696 Brevibacterium Brevibacterium linens 0 1703 605 1 species family 6 97 1789 0 1 85016 Cellulomonadaceae 1692 2 genus 5 Cellulomonas 1707 1 0 0 11 Cellulomonas gilvus 1 species 729 species 1 98 0 1711 Cellulomonas flavigena 1 species 170 0 1708 Cellulomonas fimi 2620175 0 693 no rank 1 Cellulomonas sp. PSBB021 2003551 0 693 species 1 0 145360 2 family 100 Sanguibacter 60919 1 0 100 5 genus 2 95 1 species Sanguibacter keddieii 0 60920 2 family 541 0 85018 genus 2 541 2 0 1862 1 Dermatophilus 539 species 1 Dermatophilus congolensis 0 1863 Micrococcaceae 1268 1 0 363 13125 family 39 0 1 1742989 Glutamicibacter 2 genus 8 762 0 256701 Glutamicibacter arilaitensis species 1 754 genus 2 422 1 1269 1 0 Micrococcus 0 1270 Micrococcus luteus 1 species 421 genus 1 1015 0 2078575 0 1618207 Arthrobacter sp. IHBB 11108 species 1 1015 5925 128 genus 15 Arthrobacter 1663 1 0 species 1 1461 0 656366 Arthrobacter alpinus no rank 12 3152 0 235627 0 1494608 Arthrobacter sp. PAMC 25486 1 species 363 0 290399 Arthrobacter sp. FB24 species 1 165 145 1 species Arthrobacter sp. PGP41 2079227 0 1118963 0 Arthrobacter sp. Rue61a 1 species 405 Arthrobacter sp. YC-RL1 1652545 0 679 1 species 129 1 species Arthrobacter sp. ZXY-2 1806905 0 species 1 237 0 1690248 Arthrobacter sp. LS16 91 1 species Arthrobacter sp. ATCC 21022 1771959 0 2020486 0 Arthrobacter sp. YN species 1 534 143 1 species Arthrobacter sp. U41 0 1849032 1704044 0 Arthrobacter sp. ERGS1:01 1 species 98 Arthrobacter sp. QXT-31 0 1357915 163 1 species 37928 0 Arthrobacter crystallopoietes species 1 1184 1 1868332 0 Neomicrococcus 2 genus 513 21 Neomicrococcus aestuarii 556325 0 492 1 species Pseudarthrobacter 0 1 1742993 8 766 genus 4 0 121292 Pseudarthrobacter sulfonivorans 1 species 268 368 species 1 Pseudarthrobacter chlorophenolicus 85085 0 1 species 122 0 361575 Pseudarthrobacter phenanthrenivorans 0 1742992 289 genus 1 43663 0 Paenarthrobacter aurescens 1 species 289 0 1 57493 Kocuria genus 4 733 33 0 72000 Kocuria rhizophila 1 species 456 86 species 1 Kocuria palustris 0 71999 158 1 species Kocuria flava 0 446860 Rothia 0 1 32207 4 2138 3 genus 0 2047 Rothia dentocariosa 1 species 260 species 1 1874 43675 0 Rothia mucilaginosa Renibacterium 1 1645 0 1 111 genus 2 species 1 110 0 1646 Renibacterium salmoninarum 596707 1 0 Sinomonas 2 genus 88 2 86 species 1 Sinomonas atrocyanea 0 37927 0 1 85023 Microbacteriaceae 42 family 9782 45 1 33882 0 Microbacterium 14 genus 2912 278 412 species 1 Microbacterium paludicola 300019 0 Microbacterium chocolatum 0 84292 195 species 1 Microbacterium aurum 0 36805 737 species 1 0 2609290 8 no rank 960 Microbacterium sp. No. 7 0 1714373 192 species 1 108 species 1 Microbacterium sp. str. 'China' 0 2103230 259 species 1 Microbacterium sp. XT11 367477 0 species 1 38 1916917 0 Microbacterium sp. 1.5R 1 species 98 1795053 0 Microbacterium sp. PAMC 28756 species 1 167 0 1906742 Microbacterium sp. BH-3-3-3 Microbacterium sp. CGR1 1696072 0 43 species 1 55 1 species Microbacterium sp. TPU 3598 1938334 0 197 1 species Microbacterium hominis 0 162426 0 2033 Microbacterium testaceum 1 species 133 Curtobacterium 0 2034 1 715 30 4 genus 69373 0 Curtobacterium pusillum 1 species 498 257496 0 187 2 no rank 56 species 1 Curtobacterium sp. BH-2-1-1 1905847 0 Curtobacterium sp. MR_MD2014 1561023 0 131 species 1 2 genus 663 1 0 1 110932 Leifsonia 662 species 1 Leifsonia xyli 1575 0 18 580 6 genus Clavibacter 0 1573 1 210 562 5 species Clavibacter michiganensis 0 28447 1 48 1 subspecies Clavibacter capsici 0 1874630 Clavibacter sepedonicus 0 31964 50 1 subspecies Clavibacter insidiosus 0 33014 58 subspecies 1 Clavibacter nebraskensis 0 31963 196 1 subspecies no rank 2 263 1655488 0 0 1655489 clade 2 263 2 genus 263 0 529883 Candidatus Rhodoluna planktonica 0 535712 104 species 1 159 species 1 Rhodoluna lacicola 0 529884 420 genus 1 447237 0 420 1 no rank 0 2626248 1795630 0 Frondihabitans sp. PAMC 28766 species 1 420 1002 1 3 genus Cryobacterium 69578 1 0 0 2649013 447 no rank 1 1978566 0 Cryobacterium sp. LW097 1 species 447 1 species 554 0 670052 Cryobacterium arcticum 1759331 0 genus 1 521 Cnuibacter physcomitrellae 0 1619308 521 species 1 0 518733 1 genus 437 437 1 species Microterricola viridarii 0 412690 0 1434032 1 genus 820 Pontimonas salivibrio 0 1159327 820 species 1 291 2 genus 33886 0 species 1 40 0 145458 Rathayibacter toxicus 251 1 species Rathayibacter tritici 33888 0 1 74 genus 2 Microcella 0 1 337004 1 species 73 0 279828 Microcella alkaliphila 0 33877 255 1 genus Agromyces aureus 0 453304 255 species 1 1 genus 784 1705353 0 Aurantimicrobium minutum 708131 0 784 1 species 0 1 85017 Promicromonosporaceae 6 family 750 97 179 2 genus 0 157920 Cellulosimicrobium cellulans 1710 0 85 species 1 94 no rank 1 2624466 0 species 1 94 0 1980001 Cellulosimicrobium sp. TH-20 186188 0 genus 1 89 89 1 species Xylanimonas cellulosilytica 186189 0 254250 0 genus 2 385 0 139208 Isoptericola variabilis species 1 159 226 1 species Isoptericola dokdonensis 0 372663 125316 0 1 family 632 84756 0 1 genus 632 0 84757 Beutenbergia cavernae species 1 632 566 8370 order 36 Pseudonocardiales 0 85010 1 0 2070 1 Pseudonocardiaceae family 35 7804 162 1 genus 472 142577 0 0 530584 Prauserella marina species 1 472 0 1847 1 Pseudonocardia genus 8 14 528 0 240495 Pseudonocardia dioxanivorans species 1 88 426 6 no rank 0 2619320 species 1 87 0 445576 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. EC080625-04 1096868 0 46 1 species Pseudonocardia sp. EC080610-09 1688404 0 48 1 species species 1 64 0 1641402 Pseudonocardia sp. HH130629-09 50 species 1 Pseudonocardia sp. EC080619-01 0 1096856 Pseudonocardia sp. HH130630-07 0 1690815 131 1 species genus 2 55 2 0 1 1851 Saccharomonospora 0 1852 Saccharomonospora viridis 1 species 53 0 674734 1 genus 385 0 2636053 385 1 no rank 1 species 385 0 1653480 Alloactinosynnema sp. L-07 0 43356 672 genus 1 672 1 species Kutzneria albida 43357 0 401 1 genus 2071 0 103731 0 Saccharothrix espanaensis species 1 401 3 genus 43 1864 1 40566 0 Actinosynnema 901 1 species Actinosynnema mirum 40567 0 920 1 species Actinosynnema pretiosum 0 42197 165301 0 175 genus 1 Lentzea guizhouensis 0 1586287 175 species 1 Amycolatopsis 1 1813 0 8 2131 genus 7 1814 0 Amycolatopsis methanolica species 1 168 2618356 0 231 2 no rank 1911175 0 Amycolatopsis sp. BJA-103 species 1 102 0 1896961 Amycolatopsis sp. AA4 1 species 129 Amycolatopsis orientalis 0 31958 257 species 1 252 1 species Amycolatopsis japonica 208439 0 33910 0 Amycolatopsis mediterranei species 1 1215 65496 1 0 Actinoalloteichus genus 6 13 529 2644606 0 no rank 2 211 110 species 1 Actinoalloteichus sp. GBA129-24 1612551 0 Actinoalloteichus sp. AHMU CJ021 2072503 0 101 1 species Actinoalloteichus hoggarensis 1470176 0 86 species 1 1 species 114 0 340345 Actinoalloteichus hymeniacidonis 105 1 species Actinoalloteichus sp. ADI127-7 0 1612552 genus 2 286 1 2029 1 0 Kibdelosporangium Kibdelosporangium phytohabitans 0 860235 285 1 species genus 1 144 1835 0 144 1 species Saccharopolyspora erythraea 1836 0 order 3 431 1643684 0 0 85031 1 Nakamurellaceae family 3 3 431 Nakamurella 0 53460 1 428 3 genus 2 Nakamurella multipartita 53461 0 425 species 1 3 order 187 622452 0 Kineosporiaceae 1 83778 0 10 187 family 3 genus 2 1 177 0 1 33981 Kineococcus 0 131568 Kineococcus radiotolerans species 1 176 85011 1 0 Streptomycetales 82 order 59 33908 0 2062 1 Streptomycetaceae 81 family 33849 349 1883 1 0 Streptomyces 75 genus 524 31519 68202 0 Streptomyces fulvissimus 1 species 173 Streptomyces lincolnensis 1915 0 624 species 1 Streptomyces sp. XZHG99 0 2049881 100 species 1 0 1038928 Streptomyces xinghaiensis 1 species 140 84 species 1 Streptomyces lividans 1916 0 1969 0 Streptomyces chartreusis species 1 124 Streptomyces gilvosporeus 0 553510 136 species 1 species 1 312 0 146923 Streptomyces parvulus Streptomyces ambofaciens 0 1889 113 1 species Streptomyces clavuligerus 0 1901 654 1 species Streptomyces reticuli 1926 0 352 species 1 0 92644 Streptomyces malaysiensis species 1 2507 species group 2 608 629295 0 1 species subgroup 533 1482558 0 1908 0 Streptomyces globisporus 1 species 533 species subgroup 1 75 0 1482596 75 species 1 Streptomyces griseus 1911 0 55 species 1 Streptomyces pratensis 1169025 0 29303 0 Streptomyces cattleya 1 species 196 Streptomyces avermitilis 33903 0 893 species 1 Streptomyces violaceoruber 0 1935 287 1 species Streptomyces xiamenensis 0 408015 97 1 species 2593676 0 no rank 24 10082 0 1649184 Streptomyces sp. CFMR 7 1 species 567 81 1 species Streptomyces sp. CLI2509 1984801 0 106 species 1 Streptomyces sp. 3211 0 1964449 species 1 613 0 1561022 Streptomyces sp. CCM_MD2014 139 species 1 Streptomyces sp. 769 1262452 0 Streptomyces sp. fd1-xmd 1812480 0 97 1 species 88 1 species Streptomyces sp. FR-008 206662 0 1 species 701 1725411 0 Streptomyces sp. CdTB01 species 1 531 0 2094021 Streptomyces sp. WAC00288 2135430 0 Streptomyces sp. P3 species 1 691 Streptomyces sp. CMB-StM0423 0 2059884 903 species 1 805 1 species Streptomyces sp. SirexAA-E 0 862751 species 1 710 0 1841249 Streptomyces sp. RTd22 0 1972846 Streptomyces sp. Sge12 species 1 149 Streptomyces sp. CNQ-509 0 444103 164 species 1 Streptomyces sp. S8 0 1837283 461 species 1 1 species 109 0 1961713 Streptomyces sp. MOE7 256 species 1 Streptomyces sp. PAMC 26508 0 1265601 1 species 357 0 1751294 Streptomyces sp. 4F 206 1 species Streptomyces sp. Mg1 0 465541 1661694 0 Streptomyces sp. Tue 6075 species 1 76 187 1 species Streptomyces sp. TN58 0 234612 Streptomyces sp. M56 1495638 0 1965 1 species 120 1 species Streptomyces sp. SAT1 0 1849967 1 species 420 0 68192 Streptomyces cyaneogriseus 68280 0 Streptomyces violaceusniger 1 species 2989 636 1 species Streptomyces albulus 0 68570 Streptomyces niveus 193462 0 106 species 1 68249 0 Streptomyces pactum 1 species 423 1 species 131 1355015 0 Streptomyces pluripotens Streptomyces scabiei 1930 0 768 1 species 265 species 1 Streptomyces leeuwenhoekii 1437453 0 species 1 383 0 1912 Streptomyces hygroscopicus species 1 105 1914 0 Streptomyces lavendulae 0 164348 Streptomyces puniciscabiei 1 species 262 species 1 80 0 285473 Streptomyces rubrolavendulae 424 species 1 Streptomyces peucetius 0 1950 species 1 861 0 68214 Streptomyces griseochromogenes species 1 125 1971 0 Streptomyces noursei 0 1888 Streptomyces albus species 1 195 1477431 0 2 species group 290 species 1 129 0 42239 Streptomyces sampsonii Streptomyces coelicolor 1902 0 161 species 1 Streptomyces pristinaespiralis 38300 0 102 1 species 472 1 species Streptomyces lydicus 47763 0 387 1 species Streptomyces alfalfae 1642299 0 2179 species 1 Streptomyces autolyticus 0 75293 240 1 species Streptomyces bingchenggensis 379067 0 Streptomyces vietnamensis 362257 0 91 1 species 1 species 219 0 1783515 Streptomyces sp. S10(2016) 196 1 species Streptomyces formicae 1616117 0 species 1 324 0 1940 Streptomyces albireticuli species 1 113 0 1907 Streptomyces glaucescens 219 1 species Streptomyces venezuelae 54571 0 67267 0 Streptomyces alboflavus 1 species 254 42684 0 Streptomyces collinus species 1 199 Kitasatospora 0 1 2063 41 1981 5 genus 219 species 1 Kitasatospora setae 2066 0 2633591 0 1 no rank 1317 Kitasatospora sp. MMS16-BH015 0 2018025 1317 1 species 0 1894 Kitasatospora aureofaciens species 1 155 0 68173 Kitasatospora albolonga species 1 249 0 1 2037 Actinomycetales order 18 5 7578 856 7573 17 family Actinomycetaceae 0 1 2049 0 1653174 genus 1 97 59505 0 Actinotignum schaalii species 1 97 Arcanobacterium 28263 1 0 655 1 genus 2 654 1 species Arcanobacterium haemolyticum 0 28264 genus 1 1269 0 2529408 52773 0 Actinomyces meyeri species 1 1269 0 1 2050 Mobiluncus genus 2 25 577 0 2051 Mobiluncus curtisii species 1 552 Actinomyces 0 1654 1 3290 44 genus 9 Actinomyces radicidentis 0 111015 399 1 species 0 2609248 no rank 3 689 Actinomyces sp. oral taxon 414 712122 0 366 species 1 1851395 0 Actinomyces sp. Chiba101 1 species 145 178 1 species Actinomyces sp. oral taxon 897 2081702 0 Actinomyces gaoshouyii 1960083 0 124 species 1 243 species 1 Actinomyces oris 0 544580 702 1 species Actinomyces sp. VUL4_3 0 1912795 1 species 1089 1852377 0 Actinomyces pacaensis genus 1 829 0 1069494 1661 0 Trueperella pyogenes species 1 829 Geodermatophilales 1643682 1 0 1294 1 order 8 Geodermatophilaceae 0 85030 1 55 1293 family 7 0 1 38501 Blastococcus 2 genus 203 1 202 species 1 Blastococcus saxobsidens 0 138336 5 796 genus 2 Geodermatophilus 1860 1 0 1861 0 Geodermatophilus obscurus species 1 791 Modestobacter 0 1 88138 239 1 genus 2 species 1 238 477641 0 Modestobacter marinus Propionibacteriales 1 85009 0 205 8174 order 30 12 family 1357 55 85015 1 0 Nocardioidaceae genus 2 4 77 2040 1 0 Aeromicrobium 73 species 1 Aeromicrobium erythreum 2041 0 0 182639 genus 1 79 79 species 1 Kribbella flavida 182640 0 Pimelobacter 1 2044 0 3 132 genus 2 Pimelobacter simplex 2045 0 129 species 1 934 18 4 genus Nocardioides 0 1 1839 1 species 100 2045452 0 Nocardioides sp. 78 1 no rank 236 2615069 0 1 species 236 196162 0 Nocardioides sp. JS614 580 species 1 Nocardioides dokdonensis 450734 0 80 2 genus 2 Micropruina 116071 1 0 0 75385 Micropruina glycogenica species 1 78 17 family 66 6612 0 31957 1 Propionibacteriaceae 1912216 0 3 genus 2607 species 1 897 0 33010 Cutibacterium avidum 1747 0 Cutibacterium acnes species 1 1168 Cutibacterium granulosum 0 33011 542 1 species 1 genus 221 0 203133 2633994 0 221 no rank 1 221 1 species Propionimicrobium sp. Marseille-P3275 1871034 0 1 genus 651 29404 0 651 species 1 Microlunatus phosphovorus 0 29405 genus 1 443 2801844 0 0 1750 Pseudopropionibacterium propionicum 1 species 443 Acidipropionibacterium 1 1912215 0 8 821 genus 2 813 species 1 Acidipropionibacterium acidipropionici 1748 0 72763 1 0 Tessaracoccus 5 genus 1 1062 species 1 110 0 1610493 Tessaracoccus flavus 497 1 species Tessaracoccus flavescens 399497 0 2635419 0 no rank 1 119 1 species 119 1909732 0 Tessaracoccus sp. T2.5-30 1332264 0 Tessaracoccus aquimaris 1 species 335 3 genus 741 2 0 1 1743 Propionibacterium 1744 0 Propionibacterium freudenreichii species 1 671 68 1 no rank 2608905 0 Propionibacterium sp. oral taxon 193 671223 0 68 species 1 85008 1 0 Micromonosporales 18 order 6394 12 1 28056 0 Micromonosporaceae 17 family 6382 206 168694 0 2 genus 214 species 1 142 168697 0 Salinispora arenicola 72 species 1 Salinispora tropica 0 168695 4 genus 1365 2 0 673534 1 Plantactinospora 0 2631981 1363 3 no rank Plantactinospora sp. BC1 2108470 0 115 1 species Plantactinospora sp. BB1 2071627 0 755 species 1 0 2024580 Plantactinospora sp. KBS50 species 1 493 6 genus 82 3461 0 1 1865 Actinoplanes 616 species 1 Actinoplanes friuliensis 0 196914 805 species 1 Actinoplanes missouriensis 1866 0 0 2626549 1958 3 no rank 649831 0 Actinoplanes sp. N902-109 species 1 1332 313 1 species Actinoplanes sp. SE50/110 134676 0 313 1 species Actinoplanes sp. SE50 0 2033844 22 1136 genus 4 Micromonospora 1873 1 0 47850 0 Micromonospora aurantiaca species 1 555 214 species 1 Verrucosispora maris 1003110 0 1 no rank 345 2617518 0 345 1 species Micromonospora sp. L5 648999 0 7 order 532 1 1 85013 0 Frankiales 531 8 family 6 Frankiaceae 74712 1 0 0 1854 1 Frankia 5 genus 523 10 Frankia alni 1859 0 108 species 1 128 no rank 1 0 2632575 298653 0 Frankia sp. EAN1pec 1 species 128 Frankia inefficax 298654 0 136 1 species 141 1 species Frankia casuarinae 0 106370 4 order 2 330 414714 1 0 Catenulisporales family 3 328 22 1 414877 0 Catenulisporaceae 2 genus 306 16 0 414878 1 Catenulispora 290 1 species Catenulispora acidiphila 304895 0 order 3 697 0 622450 0 622451 1 Actinopolysporaceae family 3 43 697 2 genus 654 24 0 1 1849 Actinopolyspora 1 species 630 0 414996 Actinopolyspora erythraea 24 order 41 429789 1 85004 0 Bifidobacteriales 1172 429748 23 family Bifidobacteriaceae 0 1 31953 19 genus 425933 227 0 1 1678 Bifidobacterium species 1 6074 1683 0 Bifidobacterium angulatum Bifidobacterium actinocoloniiforme 638619 0 266 species 1 932 species 1 Bifidobacterium scardovii 0 158787 1530 1 species Bifidobacterium animalis 0 28025 Bifidobacterium thermophilum 33905 0 1301 species 1 1 species 396 1694 0 Bifidobacterium pseudolongum Bifidobacterium breve 1685 0 11114 species 1 2648 species 1 Bifidobacterium dentium 0 1689 Bifidobacterium bifidum 0 1681 10627 1 species 14930 species 1 Bifidobacterium adolescentis 0 1680 Bifidobacterium asteroides 0 1684 1027 species 1 Bifidobacterium choerinum 35760 0 242 species 1 60873 1 species Bifidobacterium longum 0 216816 species 1 747 0 1691 Bifidobacterium indicum Bifidobacterium pseudocatenulatum 0 28026 240837 species 1 Bifidobacterium catenulatum 0 1 1686 71655 22195 species 2 49460 1 subspecies Bifidobacterium kashiwanohense 630129 0 species 1 507 1687 0 Bifidobacterium coryneforme 1 genus 1395 2701 0 Gardnerella vaginalis 0 2702 1395 1 species 1087 genus 1 196082 0 species 1 1087 78258 0 Parascardovia denticolens 196081 0 genus 1 161 Scardovia inopinata 0 78259 161 1 species order 159 70566 841 1 85007 0 Corynebacteriales 1 1762 0 Mycobacteriaceae family 56 11 13592 0 670516 5 genus 1087 708 species 1 Mycobacterium abscessus 36809 0 1578165 0 Mycobacterium saopaulense species 1 75 Mycobacterium stephanolepidis 0 1520670 136 1 species 1774 0 Mycobacterium chelonae 1 species 84 84 species 1 Mycobacterium immunogenum 0 83262 263 8696 genus 34 Mycobacterium 1763 1 0 Mycobacterium liflandii 261524 0 833 1 species 13 no rank 2499 0 2642494 653 species 1 Mycobacterium sp. JS623 212767 0 Mycobacterium sp. NRRL B-3805 1570328 0 90 1 species species 1 74 164757 0 Mycobacterium sp. JLS 0 1879023 Mycobacterium sp. djl-10 1 species 119 Mycobacterium sp. QIA-37 0 1561223 217 species 1 1 species 101 0 189918 Mycobacterium sp. KMS Mycobacterium sp. EPa45 0 1545728 74 species 1 1920667 0 Mycobacterium sp. WY10 1 species 109 Mycobacterium sp. MOTT36Y 1168287 0 21 species 1 224 1 species Mycobacterium sp. VKM Ac-1817D 0 1273687 Mycobacterium sp. YC-RL4 0 1682113 611 species 1 164756 0 Mycobacterium sp. MCS 1 species 101 105 species 1 Mycobacterium sp. PYR15 2051552 0 124 1 species Mycobacterium kansasii 0 1768 1809 0 Mycobacterium ulcerans species 1 252 Mycobacterium dioxanotrophicus 0 482462 482 species 1 587 species 1 Mycobacterium marinum 1781 0 300 1 species Mycobacterium leprae 0 1769 120793 0 939 8 species group Mycobacterium marseillense 0 701042 82 species 1 Mycobacterium paraintracellulare 1138383 0 13 species 1 0 339268 Mycobacterium colombiense 1 species 65 0 1764 Mycobacterium avium 1 species 591 1767 1 0 Mycobacterium intracellulare species 4 188 44 35617 0 Mycobacterium indicus pranii subspecies 1 17 Mycobacterium chimaera 222805 0 100 subspecies 1 Mycobacterium yongonense 0 1203599 27 subspecies 1 0 2249310 686 1 species group 0 722731 Mycobacterium shigaense 1 species 686 species 1 1559 29311 0 Mycobacterium haemophilum 172 species group 4 0 77643 Mycobacterium tuberculosis 0 1773 1 139 47 3 species 45 biotype 1 Mycobacterium africanum 0 33894 1 biotype 47 0 1765 Mycobacterium bovis Mycobacterium canettii 78331 0 33 species 1 600 2 genus 1073531 0 species 1 63 0 875328 Mycobacterium sinense Mycobacterium terrae 1788 0 537 species 1 genus 13 2948 0 1866885 Mycobacterium neoaurum 1795 0 90 1 species 0 758802 Mycobacterium litorale 1 species 116 Mycobacterium fortuitum 1766 0 648 species 1 species 1 550 1804 0 Mycobacterium gilvum 1800 0 Mycobacterium chubuense species 1 138 0 36814 Mycobacterium rhodesiae 1 species 106 232 1 species Mycobacterium vanbaalenii 0 110539 Mycobacterium goodii 134601 0 139 species 1 species 1 75 1771 0 Mycobacterium phlei 1772 0 Mycobacterium smegmatis 1 species 282 Mycobacterium thermoresistibile 0 1797 106 species 1 Mycobacterium aurum 1791 0 126 species 1 Mycobacterium vaccae 0 1810 340 species 1 250 1 genus 697025 0 species 1 250 0 639313 Hoyosella subflava family 2 58 0 316606 2 58 genus 2 Segniliparus 1 286801 0 species 1 56 286802 0 Segniliparus rotundus Tsukamurellaceae 0 85028 1 6 1324 family 4 Tsukamurella 0 2060 1 255 1318 genus 3 350 1 species Tsukamurella tyrosinosolvens 57704 0 Tsukamurella paurometabola 0 2061 713 1 species 0 85025 1 Nocardiaceae family 31 11267 34 Nocardia 0 1 1817 30 2871 7 genus 571 species 1 Nocardia nova 37330 0 Nocardia seriolae 0 37332 483 species 1 0 455432 Nocardia terpenica species 1 122 194 1 species Nocardia farcinica 0 37329 Nocardia cyriacigeorgica 0 135487 1244 1 species species 1 227 0 37326 Nocardia brasiliensis 8362 126 23 genus Rhodococcus 0 1 1827 175 1 species Rhodococcus rhodochrous 0 1829 Rhodococcus jostii 132919 0 98 1 species 324 species 1 Rhodococcus erythropolis 0 1833 43767 0 Rhodococcus hoagii 1 species 143 0 103816 Rhodococcus pyridinivorans species 1 399 Rhodococcus fascians 0 1828 779 1 species 142 species 1 Rhodococcus ruber 1830 0 Rhodococcus aetherivorans 191292 0 275 1 species 122 species 1 Rhodococcus qingshengii 334542 0 4597 no rank 12 192944 0 393 species 1 Rhodococcus sp. 2G 0 1570939 Rhodococcus sp. p52 0 935199 382 species 1 1045808 0 Rhodococcus sp. YL-1 1 species 142 82 1 species Rhodococcus sp. MTM3W5.2 0 1805827 1245 species 1 Rhodococcus sp. B7740 1564114 0 Rhodococcus sp. PBTS 1 1653478 0 39 species 1 Rhodococcus sp. 008 0 1723645 305 species 1 1 species 733 0 1653479 Rhodococcus sp. PBTS 2 0 679318 Rhodococcus sp. WMMA185 1 species 180 1 species 352 0 1727214 Rhodococcus sp. H-CA8f 0 1033922 Rhodococcus sp. WB1 species 1 426 318 species 1 Rhodococcus sp. BH4 1807790 0 0 37919 Rhodococcus opacus species 1 1182 no rank 1 760 697024 0 0 1847725 760 1 genus 760 1 species Lawsonella clevelandensis 1528099 0 85029 0 799 3 family Dietzia 1 37914 0 799 2 3 genus 2617939 0 703 no rank 1 Dietzia sp. oral taxon 368 712270 0 703 species 1 species 1 94 499555 0 Dietzia timorensis 85026 1 0 Gordoniaceae family 9 4759 44 104 4715 genus 8 Gordonia 0 1 2053 2 no rank 490 2657482 0 Gordonia sp. YC-JH1 0 2059875 159 1 species 331 1 species Gordonia sp. KTR9 0 337191 Gordonia phthalatica 0 1136941 1316 1 species 1 species 78 0 1004901 Gordonia iterans 0 2054 Gordonia bronchialis species 1 345 Gordonia terrae 2055 0 980 species 1 Gordonia polyisoprenivorans 84595 0 1402 1 species family 52 37166 266 0 1653 1 Corynebacteriaceae 444 36900 51 genus Corynebacterium 0 1716 1 135 species 1 Corynebacterium frankenforstense 1230998 0 0 187491 Corynebacterium glaucum 1 species 82 1 species 277 0 1697 Corynebacterium ammoniagenes 1 species 1490 0 571915 Corynebacterium mustelae species 1 1253 0 1721 Corynebacterium callunae Corynebacterium kroppenstedtii 161879 0 664 1 species 0 43771 Corynebacterium urealyticum species 1 449 127 1 species Corynebacterium efficiens 0 152794 69 1 species Corynebacterium ureicelerivorans 401472 0 575 1 species Corynebacterium testudinoris 136857 0 species 1 60 0 35757 Corynebacterium cystitidis 1 species 174 65058 0 Corynebacterium ulcerans Corynebacterium humireducens 0 1223514 68 species 1 Corynebacterium kutscheri 0 35755 858 1 species species 1 1346 0 161899 Corynebacterium singulare 949 1 species Corynebacterium simulans 146827 0 0 108486 Corynebacterium falsenii 1 species 142 Corynebacterium striatum 43770 0 886 species 1 species 1 208 0 258224 Corynebacterium resistens 0 1727 Corynebacterium variabile 1 species 366 1050174 0 Corynebacterium epidermidicanis species 1 248 0 1408191 Corynebacterium deserti 1 species 1184 Corynebacterium diphtheriae 1717 0 1154 species 1 1072256 0 Corynebacterium uterequi species 1 169 Corynebacterium sphenisci 0 191493 172 1 species 0 191610 Corynebacterium atypicum species 1 43 1 species 214 28028 0 Corynebacterium flavescens Corynebacterium crudilactis 1652495 0 2694 1 species species 1 3196 1718 0 Corynebacterium glutamicum Corynebacterium camporealensis 0 161896 126 species 1 Corynebacterium lactis 1231000 0 451 species 1 Corynebacterium halotolerans 225326 0 122 species 1 0 38305 Corynebacterium vitaeruminis species 1 613 686 species 1 Corynebacterium pseudotuberculosis 0 1719 no rank 2 2373 2624378 0 1 species 1030 0 1487956 Corynebacterium sp. ATCC 6931 0 702967 Corynebacterium sp. NML98-0116 1 species 1343 0 42817 Corynebacterium argentoratense species 1 353 Corynebacterium stationis 1705 0 3317 species 1 1 species 1206 575200 0 Corynebacterium maris 823 species 1 Corynebacterium glyciniphilum 0 1404244 species 1 350 156978 0 Corynebacterium imitans 349751 0 Corynebacterium marinum 1 species 98 1 species 91 0 161895 Corynebacterium phocae [Brevibacterium] flavum 92706 0 2259 1 species species 1 78 0 203263 Corynebacterium aquilae 1970 1 species Corynebacterium jeikeium 0 38289 1303 species 1 Corynebacterium casei 0 160386 1 species 807 0 169292 Corynebacterium aurimucosum 53 species 1 Corynebacterium terpenotabidum 0 89154 Corynebacterium doosanense 1121358 0 125 1 species 0 85012 1 Streptosporangiales order 15 3146 6 4 family 1748 8 0 2004 1 Streptosporangiaceae 0 83681 1021 1 genus 1021 no rank 1 2593643 0 species 1 1021 0 1909395 Nonomuraea sp. ATCC 55076 Streptosporangium 1 2000 0 719 5 genus 2 species 1 714 0 2001 Streptosporangium roseum 2 265 3 family Thermomonosporaceae 2012 1 0 genus 2 45 263 0 2019 1 Thermomonospora species 1 218 0 2020 Thermomonospora curvata 1 83676 0 Nocardiopsaceae family 7 1127 4 Nocardiopsis 0 2013 1 2 660 4 genus Nocardiopsis gilva 280236 0 152 species 1 1 species 344 53437 0 Nocardiopsis alba Nocardiopsis dassonvillei 0 2014 162 1 species Thermobifida 1 83677 0 463 1 2 genus species 1 462 0 2021 Thermobifida fusca 428 no rank 1 0 52018 Actinobacteria bacterium IMCC26256 0 1650658 428 species 1 0 85014 475 order 3 Glycomycetaceae 0 85034 1 1 475 3 family 1 474 genus 2 Stackebrandtia 283810 1 0 473 1 species Stackebrandtia nassauensis 283811 0 1643683 0 2 order 30 family 2 1 30 85032 1 0 Acidothermaceae 29 genus 1 0 28048 species 1 29 28049 0 Acidothermus cellulolyticus 2039638 1 0 Candidatus Nanopelagicales 11 order 5460 1 5459 10 family 2162846 0 1 719 4 genus Candidatus Nanopelagicus 1 2039639 0 1 species 632 0 1884915 Candidatus Nanopelagicus hibericus Candidatus Nanopelagicus abundans 1884916 0 16 1 species Candidatus Nanopelagicus limnes 0 1884634 70 1 species 6 genus 4740 0 622681 206 species 1 Candidatus Planktophila sulfonica 0 1884904 Candidatus Planktophila vernalis 0 1884907 1433 1 species Candidatus Planktophila limnetica 0 573600 312 species 1 1 species 1015 0 1884913 Candidatus Planktophila lacus Candidatus Planktophila versatilis 0 1884905 1617 species 1 157 1 species Candidatus Planktophila dulcis 1884914 0 1643818 0 2 no rank 47 Thermobispora 0 1 147067 47 2 genus 2 species 1 45 0 2006 Thermobispora bispora 17026 phylum 33 0 200795 1 301297 0 Dehalococcoidia class 6 263 5652 670486 1 0 Dehalogenimonas genus 3 1214 1 1 species 642 0 552810 Dehalogenimonas lykanthroporepellens 1 species 571 1839801 0 Dehalogenimonas formicexedens 4175 order 2 1202465 0 family 2 4175 1202464 0 2 genus 4175 61434 0 1 no rank 1236 0 237581 1236 1 species Dehalococcoides sp. UCH007 1522671 0 61435 0 Dehalococcoides mccartyi species 1 2939 2908 1 8 class Chloroflexia 32061 1 0 2907 order 7 32064 0 suborder 4 1705 1508594 0 0 1106 4 family 1705 4 genus 1705 1 1107 1 0 Chloroflexus 1 species 496 152260 0 Chloroflexus aggregans Chloroflexus aurantiacus 0 1108 1 1208 604 species 2 Chloroflexus sp. Y-400-fl 0 480224 604 strain 1 3 suborder 1202 0 1508595 0 1 1508635 Roseiflexaceae 3 family 1202 8 0 120961 2 genus 1194 385 1 no rank 0 2609473 species 1 385 357808 0 Roseiflexus sp. RS-1 1 species 809 120962 0 Roseiflexus castenholzii class 7 24 1109 0 1 189775 Thermomicrobia 2 148 order 3 Thermomicrobiales 189776 1 0 family 2 146 189777 0 499 1 0 Thermomicrobium genus 2 146 1 Thermomicrobium roseum 500 0 145 species 1 3 subclass 937 0 85000 Sphaerobacterales 85001 1 0 937 2 3 order 935 2 suborder 255728 0 85002 1 0 Sphaerobacteraceae 2 family 2 935 1 genus 933 2056 0 933 species 1 Sphaerobacter thermophilus 0 2057 292625 0 2645 class 4 Anaerolineales 0 1 292629 1 2645 4 order 292628 0 family 3 2644 1811 1 genus 0 233189 0 167964 Anaerolinea thermophila species 1 1811 0 1324991 1 no rank 610 1889813 0 Anaerolineaceae bacterium oral taxon 439 species 1 610 2019482 0 genus 1 223 223 species 1 Brevefilum fermentans 0 1986204 5 class 3507 5 1 1382928 0 Ardenticatenia order 4 22 3502 0 1382929 1 Ardenticatenales 9 3480 3 family Ardenticatenaceae 0 1 1382930 Candidatus Promineofilum 1988031 1 0 1 3471 genus 2 0 1806508 Candidatus Promineofilum breve species 1 3470 class 3 1205 475962 0 0 475963 1 Caldilineales order 3 2 1205 0 475964 1203 family 2 1203 2 genus 2 Caldilinea 0 1 233191 Caldilinea aerophila 133453 0 1201 species 1 32066 0 22 phylum 18815 Fusobacteriia 0 203490 1 4 18815 22 class Fusobacteriales 0 1 203491 6 18811 21 order Fusobacteriaceae 203492 1 0 13084 3 11 family 9 genus 12405 28 0 848 1 Fusobacterium 3210 species 1 Fusobacterium nucleatum 0 851 Fusobacterium periodonticum 0 860 2565 1 species 850 0 Fusobacterium mortiferum species 1 1189 1361 1 species Fusobacterium varium 0 856 species 1 588 0 859 Fusobacterium necrophorum 1 species 354 0 849 Fusobacterium gonidiaformans species 1 1811 0 861 Fusobacterium ulcerans Fusobacterium hwasookii 0 1583098 1299 1 species genus 1 676 167639 0 676 1 species Ilyobacter polytropus 167642 0 0 1129771 1 Leptotrichiaceae 9 family 5721 3 34104 0 genus 1 697 Streptobacillus moniliformis 34105 0 697 1 species 32068 0 genus 1 1433 1433 species 1 Sebaldella termitidis 0 826 2459 4 genus 5 Leptotrichia 0 1 32067 2633022 0 1877 no rank 3 Leptotrichia sp. oral taxon 498 712368 0 743 1 species Leptotrichia sp. oral taxon 847 1785996 0 691 species 1 443 1 species Leptotrichia sp. oral taxon 212 0 712357 578 species 1 Leptotrichia buccalis 0 40542 0 168808 1 genus 1129 Sneathia amnii 0 187101 1129 species 1 0 200940 1314 6 phylum 6 class 1314 67799 0 0 188710 order 6 1314 Thermodesulfobacteriaceae 0 1 188711 1 1314 6 family 444090 0 genus 1 269 269 1 species Caldimicrobium thiodismutans 1653476 0 1 1740 0 Thermodesulfobacterium genus 3 910 19 0 1741 Thermodesulfobacterium commune species 1 565 1 species 326 0 1295609 Thermodesulfobacterium geofontis 241192 0 genus 1 134 1 species 134 0 171695 Thermodesulfatator indicus