members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4816 24797228 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 52956 0 1 0 name 0 24658698 2 Bacteria 141 superkingdom 4495 1 4 0 1873 1930617 phylum 1873 0 4 class Calditrichae 1962850 4 1 0 1869 1962852 Calditrichales 6 order 3 1 Calditrichaceae 1962854 family 11 0 1863 1 2 1 0 1852 187144 genus 0 1852 Caldithrix abyssi 187145 species 1 phylum 200930 4950 0 8 68337 Deferribacteres class 6 0 4950 1 8 1 7 28 order Deferribacterales 191393 4944 0 6 1 4916 0 36 family Deferribacteraceae 191394 0 966 Flexistipes 2351 3 genus 2 1 1 0 963 2352 Flexistipes sinusarabici species genus 545865 1011 0 1 0 1011 477976 Calditerrivibrio nitroreducens species 1 1 53572 genus 0 1650 1 Deferribacter desulfuricans 197162 species 0 1650 1 0 1253 117999 genus 1 0 1253 Denitrovibrio acetiphilus 118000 species 5 phylum 200938 2238 0 1 5 118001 Chrysiogenetes class 33 0 2238 1 4 24 order Chrysiogenales 189769 2205 0 189770 Chrysiogenaceae 16 family 0 2181 1 3 0 2165 Desulfurispirillum 393029 26 genus 2 1 Desulfurispirillum indicum 936456 species 0 2139 1 382 clade 1783270 6476869 0 8 0 6998 142182 phylum 219685 Gemmatimonadetes 60 class 0 6998 1 8 202 order Gemmatimonadales 219686 6938 0 1 7 6736 0 48 family 219687 Gemmatimonadaceae 6 1 2 1 0 3555 Gemmatirosa 1706036 genus 12 861299 Gemmatirosa kalamazoonesis species 0 3543 1 3 1 0 3133 173479 Gemmatimonas 88 genus 1397 0 species Gemmatimonas phototrophica 1379270 1 1 1648 0 species 173480 Gemmatimonas aurantiaca 367 68336 clade 0 6466294 338 1 0 6443415 Bacteroidetes 976 phylum 57 24 1 0 31272 Sphingobacteriia 117747 class 53 23 1 0 31219 Sphingobacteriales 200666 87 order 84566 Sphingobacteriaceae family 74 0 31132 1 22 84568 no rank 0 1704 1 0 1704 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 species 1 1 6 Sphingobacterium 28453 55 genus 0 10104 no rank 2609468 8255 0 4 1 2200 0 species 1933220 Sphingobacterium sp. B29 species 1538644 Sphingobacterium sp. ML3W 2034 0 1 Sphingobacterium sp. 21 743722 species 0 1837 1 1 0 2184 Sphingobacterium sp. G1-14 2003121 species species 1010 Sphingobacterium mizutaii 1794 0 1 1 4 101 genus 423349 Mucilaginibacter 5637 0 1 Mucilaginibacter sp. BJC16-A31 1234841 species 0 1683 1 Mucilaginibacter gotjawali 1550579 species 0 1982 1 1871 0 no rank 2617802 1 1871 0 species Mucilaginibacter sp. PAMC 26640 1300914 0 2017 1649482 Pseudopedobacter genus 10 2 1 1 species Pseudopedobacter saltans 151895 2007 0 37 genus 84567 Pedobacter 9779 0 1 6 0 2163 430522 Pedobacter steynii species 1 1 0 1292 363852 Pedobacter ginsengisoli species 1 species 188932 Pedobacter cryoconitis 2274 0 1 2116 0 no rank 2628915 Pedobacter sp. PACM 27299 1727164 species 0 2116 1 1 species Pedobacter heparinus 984 1897 0 genus 4 929509 Solitalea 1817 0 1 2 1 0 1813 995 Solitalea canadensis species 1937959 Saprospiria 11 class 0 3405 1 7 0 3394 1936988 Saprospirales order 7 6 1 0 2242 1937961 family 2 0 2242 Haliscomenobacter 2349 genus 5 2 1 1 0 2237 2350 Haliscomenobacter hydrossis species 3 1 1145 0 2 family Saprospiraceae 89374 0 1143 1007 Saprospira genus 36 2 1 1 1107 0 species Saprospira grandis 1008 218084 0 class 91 Flavobacteriia 117743 148 1 0 217993 200644 Flavobacteriales order 240 147 1 0 3 246874 Cryomorphaceae family 1 132897 0 2298 family Flavobacteriaceae 49546 103 1 2895 0 9 genus 111500 Muricauda 3 1 1181 0 species Muricauda lutaonensis 516051 1 1705 0 species Muricauda ruestringensis 111501 1 3 genus 417127 Zunongwangia 1745 0 1 2 1742 0 species 398743 Zunongwangia profunda 1 1649495 genus 0 1798 1 1 no rank 2622645 1798 0 1 Seonamhaeicola sp. S2-3 1936081 species 0 1798 0 2885 326319 Dokdonia genus 18 4 1 326320 Dokdonia donghaensis species 0 1009 1 no rank 2615033 1858 0 2 983548 Dokdonia sp. 4H-3-7-5 species 0 1071 1 1 Dokdonia sp. MED134 313590 species 0 787 1 983 0 genus 83612 species Psychroflexus torquis 57029 983 0 1 1 4 Lacinutrix 291183 genus 7 0 3830 no rank 2647285 2157 0 2 1 Lacinutrix sp. Bg11-31 2057808 species 0 1072 1 0 1085 Lacinutrix sp. 5H-3-7-4 983544 species 1 Lacinutrix venerupis 1486034 species 0 1666 2 0 3202 61432 no rank species Flavobacteriaceae bacterium 3519-10 531844 1753 0 1 species Flavobacteriaceae bacterium UJ101 1150389 1449 0 1 3 1 1343 0 1 genus Formosa 225842 2 2644710 no rank 0 1342 species Formosa sp. Hel1_33_131 1336794 795 0 1 species Formosa sp. Hel3_A1_48 1336795 547 0 1 1 1176327 genus 0 827 no rank 2636237 827 0 1 0 827 Aureitalea sp. RR4-38 2094025 species 1 1790 0 genus 2700084 1 1 1850246 Lutibacter sp. LPB0138 species 0 1790 1 2 genus 1 112040 Zobellia 1779 0 1778 0 species 63186 Zobellia galactanivorans 1 0 1965 1518147 genus 1 Wenyingzhuangia fucanilytica 1790137 species 0 1965 1 genus 1 143222 Salegentibacter 1184 0 1 2 1 0 1183 2633436 no rank 1 0 1183 1729720 Salegentibacter sp. T436 species 26 genus Nonlabens 363408 3920 0 1 5 0 1887 2615035 no rank 2 species Nonlabens sp. MIC269 1476901 1018 0 1 1 Nonlabens sp. MB-3u-79 2058134 species 0 869 Nonlabens dokdonensis 328515 species 0 882 1 Nonlabens sediminis 319236 species 0 1125 1 genus 1204360 1153 0 1 1 Siansivirga zeaxanthinifaciens 762954 species 0 1153 Lutibacter 358023 1 genus 0 1318 1 2 1 1622118 Lutibacter profundi species 0 1317 Cellulophaga 104264 12 genus 0 4553 1 4 1 1337 0 species Cellulophaga lytica 979 1799 0 species 76594 Cellulophaga baltica 1 0 1405 59600 Cellulophaga algicola species 1 1 6 genus 50 Polaribacter 52959 8308 0 1 species Polaribacter vadi 1774273 1883 0 996801 Polaribacter reichenbachii species 0 2020 1 no rank 196858 4355 0 3 1 0 1464 2058137 Polaribacter sp. ALD11 species Polaribacter sp. BM10 1529069 species 0 1452 1 species 313598 Polaribacter sp. MED152 1439 0 1 1 5 Tenacibaculum 104267 genus 7 0 6583 1 0 954 107401 Tenacibaculum maritimum species 0 1496 669041 Tenacibaculum dicentrarchi species 1 Tenacibaculum todarodis 1850252 species 0 1642 1 species Tenacibaculum jejuense 584609 2484 0 1 1 genus 178469 1184 0 1 0 1184 Arenibacter algicola 616991 species 1538 0 genus 261827 1 species Algibacter alginicilyticus 1736674 1538 0 1 1 831 0 genus 389486 1 0 831 2648869 no rank 1 831 0 species 1453352 Sediminicola sp. YIK13 genus 1209327 1550 0 1 1550 0 species 1803846 Flavivirga eckloniae 1 Capnocytophaga 1016 genus 231 0 29003 1 15 45243 Capnocytophaga haemolytica species 0 1551 1 species 28189 Capnocytophaga cynodegmi 1428 0 1 0 1445 1018 Capnocytophaga ochracea species 1 species Capnocytophaga sputigena 1019 2588 0 1 species 1848904 Capnocytophaga stomatis 2060 0 1 28188 Capnocytophaga canimorsus species 0 1572 1 1 0 4947 Capnocytophaga leadbetteri 327575 species 11209 0 no rank 2640652 6 1 0 1323 Capnocytophaga sp. oral taxon 864 1316593 species 1 1158 0 species Capnocytophaga sp. H2931 1945657 0 1618 209053 Capnocytophaga sp. ChDC OS43 species 1 species Capnocytophaga sp. oral taxon 878 1316596 4927 0 1 1 species Capnocytophaga sp. oral taxon 323 1705617 1117 0 1 1945658 Capnocytophaga sp. H4358 species 0 1066 1 species 1017 Capnocytophaga gingivalis 1972 0 0 1758 252306 Robiginitalea 5 genus 2 1 1 1753 0 species 252307 Robiginitalea biformata 1 1271 0 genus 153265 1 species Aequorivita sublithincola 101385 1271 0 genus 216431 1078 0 1 1 species 313588 Croceibacter atlanticus 1078 0 genus 59 237 Flavobacterium 15362 0 1 9 Flavobacterium johnsoniae 986 species 0 4409 1 0 2628 996 Flavobacterium columnare species 1 1 species 312277 Flavobacterium indicum 1484 0 953 0 species 1763534 Flavobacterium crassostreae 1 1 0 1794 1492737 Flavobacterium gilvum species 1036 0 species 55197 Flavobacterium branchiophilum 1 1 1306519 Flavobacterium commune species 0 1616 1 species 96345 Flavobacterium psychrophilum 1383 0 genus 4 Maribacter 252356 5429 0 1 5 0 1116 Maribacter cobaltidurans 1178778 species 1 0 4309 2615042 no rank 3 1644130 Maribacter sp. 1_2014MBL_MicDiv species 0 1715 1 1472 0 species Maribacter sp. T28 1836467 1 0 1122 Maribacter sp. HTCC2170 313603 species 1 genus 1 336276 Olleya 1337 0 1 2 1 no rank 2615019 1336 0 1 1336 0 species 2058135 Olleya sp. Bg11-27 1 1357 0 genus 393005 1 0 1357 Tamlana sp. UJ94 2069432 species genus 286104 2950 0 2 2615021 no rank 0 2950 2 1 0 1219 Winogradskyella sp. J14-2 1936080 species 0 1731 Winogradskyella sp. PG-2 754409 species 1 0 5162 Gramella 292691 genus 13 5 1 species 1913577 Gramella sp. LPB0144 1040 0 1 1334 0 species Gramella sp. SH35 2126553 1 1 species 411153 Gramella forsetii 1474 0 1 species Gramella flava 1486245 1301 0 genus 166 Myroides 76831 8728 0 1 5 2 0 3913 2642485 no rank 1 species 1458492 Myroides sp. ZB35 2019 0 1894 0 species 1583100 Myroides sp. A21 1 1 1587 0 species Myroides profundi 480520 1 76832 Myroides odoratimimus species 0 3062 1398 0 family 1333713 2 2 1 0 1398 267986 Owenweeksia genus 8 1 1390 0 species Owenweeksia hongkongensis 253245 1755828 Ichthyobacteriaceae 4 family 0 667 1 2 663 0 genus 1755829 1 Ichthyobacterium seriolicida 242600 species 0 663 1 22 family 2762318 75526 0 10 22069 0 no rank 2782232 genus 78 Chryseobacterium 59732 20345 0 1 9 3 0 5720 2593645 no rank 1 878220 Chryseobacterium sp. StRB126 species 0 2120 0 1510 1721091 Chryseobacterium sp. IHB B 17019 species 1 1 species Chryseobacterium sp. T16E-39 2015076 2090 0 1 558152 Chryseobacterium piperi species 0 1723 1 1685010 Chryseobacterium glaciei species 0 1820 species 253 Chryseobacterium indologenes 3894 0 1 Chryseobacterium gallinarum 1324352 species 0 5156 1 1 1265445 Chryseobacterium camelliae species 0 1954 0 1724 2782228 genus 1 1724 0 species 536441 Chryseobacterium taklimakanense 1 0 5033 34084 Riemerella genus 12 2 1 1 0 5021 34085 Riemerella anatipestifer species 1 2 148 genus 28250 Ornithobacterium 33222 0 1 Ornithobacterium rhinotracheale 28251 species 0 33074 1 2 Weeksella 1013 genus 1 0 1164 1 0 1163 1014 Weeksella virosa species 6 1 0 14038 Elizabethkingia 308865 genus 79 1117645 Elizabethkingia anophelis species 0 5520 1 1 1594 0 species Elizabethkingia genomosp. 4 1756150 1 species Elizabethkingia miricola 172045 2473 0 1798 0 species Elizabethkingia genomosp. 3 1756149 1 1 species Elizabethkingia meningoseptica 238 2574 0 10 1 0 4514 39782 Blattabacteriaceae 4 family 9 1 0 4510 34098 Blattabacterium genus 69 6 no rank 2647581 3441 0 1 species 367806 Blattabacterium sp. (Blatta orientalis) 446 0 1 Blattabacterium sp. (Periplaneta americana) 367488 species 0 406 1 0 451 1186051 Blattabacterium sp. (Blaberus giganteus) species 39768 Blattabacterium sp. (Mastotermes darwiniensis) species 0 437 1 species Blattabacterium sp. (Blattella germanica) 624186 1144 0 1 species Blattabacterium sp. (Nauphoeta cinerea) 1316444 557 0 1 1 Blattabacterium punctulatus 164514 species 0 582 1 418 0 species 1653831 Blattabacterium cuenoti 1483 0 8 family 1853230 Crocinitomicaceae 3 1 2 1 1475 0 genus 26 Fluviicola 332102 1449 0 species 191579 Fluviicola taffensis 1 0 1265 313602 no rank 3 2 1 1067 0 6 genus 336809 Candidatus Sulcia 1 Candidatus Sulcia muelleri 336810 species 0 1061 1940138 genus 0 198 1 1 species 1415657 Candidatus Walczuchella monophlebidarum 198 0 Cytophagia 768503 class 193 0 76509 1 61 60 1 0 76316 Cytophagales 768507 order 442 2909 0 family 2 Persicobacteraceae 1853234 3 1 2907 0 genus 31 Persicobacter 59740 2 1 1 no rank 2664020 2876 0 0 2876 1085624 Persicobacter sp. JZB09 species 1 0 38096 1853232 Hymenobacteraceae 138 family 16 1 0 5546 Rufibacter 1379908 genus 49 4 1 2 2639626 no rank 0 3448 1 1379910 Rufibacter sp. DG31D species 0 1656 1 0 1792 Rufibacter sp. DG15C 1379909 species 1 species Rufibacter tibetensis 512763 2049 0 287 genus Hymenobacter 89966 26927 0 1 8 1 3313 0 species Hymenobacter swuensis 1446467 5 19073 0 no rank 2615202 1 4831 0 species 1356852 Hymenobacter sp. APR13 1385663 Hymenobacter sp. DG25A species 0 2429 1 1 1484116 Hymenobacter sp. PAMC 26554 species 0 3780 5000 0 species Hymenobacter sp. PAMC 26628 1484118 1 0 3033 1385664 Hymenobacter sp. DG25B species 1 1 0 4254 Hymenobacter sedentarius 1411621 species 3 1 0 5485 323449 Pontibacter genus 20 species Pontibacter korlensis 400092 2663 0 1 1 species 388950 Pontibacter akesuensis 2802 0 1 4 18 family 200667 Flammeovirgaceae 4148 0 2 1 2040 0 6 genus 59739 Flammeovirga 1 0 2034 2637820 no rank 1 2034 0 species 1191459 Flammeovirga sp. MY04 2090 0 no rank 340671 1 1 species Flammeovirgaceae bacterium 311 1257021 2090 0 1653 0 family 2762301 2 0 1653 Marivirga 869806 genus 24 2 1 1629 0 species 1006 Marivirga tractuosa 1 0 1867 Bernardetiaceae 1937968 family 5 3 1 1 2 1937972 Bernardetia 1 genus 0 1862 1861 0 species Bernardetia litoralis 999 1 17 1 0 19402 89373 Cytophagaceae family 137 9 genus 105 Runella 1853 0 1 2 1 1844 0 species 106 Runella slithyformis 1 2 120831 Dyadobacter genus 11 0 3280 1 0 3269 Dyadobacter fermentans 94254 species genus 128 107 Spirosoma 8725 0 1 6 1 1379870 Spirosoma radiotolerans species 0 1508 2181 0 species 1178516 Spirosoma montaniterrae 1 1555 0 species Spirosoma sp. HA7 2057025 1 0 1822 564064 Spirosoma rigui species 1 1 0 1531 Spirosoma aerolatum 1211326 species Cytophaga 978 genus 15 0 2141 1 2 1 0 2126 Cytophaga hutchinsonii 985 species 2 1 0 1788 Fibrella 861914 genus 2 1786 0 no rank 2620963 1 1834519 Fibrella sp. ES10-3-2-2 species 0 1786 1 1 2 7 genus 319458 Leadbetterella 1478 0 Leadbetterella byssophila 316068 species 0 1471 1 1 4 3 family 1501348 Amoebophilaceae 833 0 1 2 genus 1 Candidatus Amoebophilus 281119 450 0 1 449 0 species 281120 Candidatus Amoebophilus asiaticus 1 380 0 genus 273135 0 380 2641185 no rank 1 1 380 0 species Cardinium endosymbiont of Encarsia pergandiella 249402 6966 0 family 25 563798 Cyclobacteriaceae 10 1 1 2 3 genus Echinicola 390846 1604 0 1 species Echinicola vietnamensis 390884 1601 0 1 2 genus 2 232244 Belliella 1390 0 1388 0 species 232259 Belliella baltica 1 1 2 genus 2 246875 Algoriphagus 1162 0 1 1160 0 species 1727163 Algoriphagus sp. M8-2 68288 Cyclobacterium 53 genus 0 2785 1 3 1424 0 species 104 Cyclobacterium marinum 1 0 1308 320787 Cyclobacterium amurskyense species 1 0 6085520 200643 Bacteroidia class 216 73 1 1 60 Bacteroidales 171549 order 2275 0 6073223 11 1 0 2322124 815 Bacteroidaceae family 67 0 2322057 816 Bacteroides genus 117097 10 1 1 28119 Bacteroides zoogleoformans species 0 50749 Bacteroides fragilis 817 species 0 423416 1 species Bacteroides thetaiotaomicron 818 367895 0 1 0 272851 246787 Bacteroides cellulosilyticus species 1 1 362584 0 species Bacteroides caccae 47678 290053 Bacteroides helcogenes species 0 62497 1 1 252131 0 species Bacteroides caecimuris 1796613 species Bacteroides heparinolyticus 28113 46668 0 1 28116 Bacteroides ovatus species 0 366169 1 family 10 2005519 Barnesiellaceae 214862 0 1 3 2 1 214852 0 genus 173 Barnesiella 397864 1 214679 0 species Barnesiella viscericola 397865 5 0 1705999 333046 no rank 3 909656 genus 0 1703950 1 Bacteroides dorei 357276 species 0 347859 1 376805 Bacteroides salanitronis species 0 115239 1240852 0 species Bacteroides vulgatus 821 1 2 1 0 2049 511434 Candidatus Azobacteroides 14 genus 1 Candidatus Azobacteroides pseudotrichonymphae 511435 species 0 2035 family 219 2005525 Tannerellaceae 779958 0 1 7 1 3 253 genus 375288 Parabacteroides 747160 0 1 497320 0 no rank 2649774 0 497320 Parabacteroides sp. CT06 2025876 species 1 249587 0 species Parabacteroides distasonis 823 1 0 32579 Tannerella 195950 genus 87 3 1 species Tannerella forsythia 28112 21139 0 1 1 11353 0 no rank 2620507 712710 Tannerella sp. oral taxon HOT-286 species 0 11353 1 no rank 185291 3493 0 1 0 3493 Bacteroidales bacterium CF 1400053 species 1 family 120 Porphyromonadaceae 171551 16129 0 1 4 0 16009 Porphyromonas 836 genus 62 3 1 1 Porphyromonas asaccharolytica 28123 species 0 4021 1 0 11926 837 Porphyromonas gingivalis species 0 283028 Rikenellaceae 171550 63 family 5 1 2 1 278790 0 genus 135 Alistipes 239759 1 278655 0 species 214856 Alistipes finegoldii 1 2 14 genus 1611681 Mucinivorans 4175 0 4161 0 species 1433126 Mucinivorans hirudinis 1 1 3 Odoribacteraceae 1853231 1 family 0 202578 0 202577 Odoribacter 283168 11 genus 2 1 species 28118 Odoribacter splanchnicus 202566 0 1 11 1 0 519591 171552 Prevotellaceae family 80 10 1 519511 0 genus 885 Prevotella 838 41418 0 species 589436 Prevotella fusca 1 species 839 Prevotella ruminicola 43727 0 1 0 37564 Prevotella jejuni 1177574 species 1 0 47026 28132 Prevotella melaninogenica species 1 52227 Prevotella dentalis species 0 35171 1 1 Prevotella denticola 28129 species 0 28079 1 76123 Prevotella enoeca species 0 16994 0 9840 2638335 no rank 1 0 9840 Prevotella sp. oral taxon 299 652716 species 1 258807 0 species Prevotella intermedia 28131 1 3 1 0 5630 2005523 Paludibacteraceae 25 family genus 22 346096 Paludibacter 5605 0 1 2 Paludibacter propionicigenes 185300 species 0 5583 1 family 2005520 17556 0 6 307628 Petrimonas 12 genus 0 6634 1 2 1642646 Petrimonas mucosa species 0 6622 1 6086 0 genus 45 294702 Proteiniphilum 2 1 species 1642647 Proteiniphilum saccharofermentans 6041 0 1 genus 5 Fermentimonas 1784836 4836 0 1 2 4831 0 species 1562970 Fermentimonas caenicola 1 12 1 0 12081 1970189 Marinilabiliales order 35 1471398 Prolixibacteraceae family 13 0 4743 1 3 2 1 0 4730 Draconibacterium 1471399 14 genus 1 4716 0 species 1168034 Draconibacterium orientale 1573805 Marinifilaceae 2 family 0 2788 1 2 1 genus 2060722 2786 0 2786 0 species Marinifilaceae bacterium SPP2 1717717 1 1 3 Marinilabiliaceae 558415 31 family 0 2237 0 2206 1193324 Alkalitalea genus 11 2 1 species 889453 Alkalitalea saponilacus 2195 0 1 0 2278 Salinivirgaceae 1970190 31 family 3 1 2 1 0 2247 1970191 Salinivirga 5 genus 1 0 2242 1307839 Salinivirga cyanobacteriivorans species 0 11015 Bacteroidetes Order II. Incertae sedis 1100069 order 254 7 1 563843 Rhodothermaceae family 70 0 10761 1 6 1 1196022 no rank 0 4156 1 4156 0 species 1779382 Rhodothermaceae bacterium RA 2 1 0 1953 146918 Salinibacter 7 genus 1 species 146919 Salinibacter ruber 1946 0 1 2 107 genus 29548 Rhodothermus 4582 0 1 species 29549 Rhodothermus marinus 4475 0 1853228 Chitinophagia 22 class 0 17553 1 17 57 order 1853229 Chitinophagales 17531 0 1 16 1 15 family 328 563835 Chitinophagaceae 17474 0 1 2 Filimonas 649460 3 genus 0 1968 Filimonas lacunae 477680 species 0 1965 1 3 1 3502 0 genus 4 Niabella 379899 1740 0 species 1176587 Niabella ginsenosidivorans 1 446683 Niabella soli species 0 1758 1 genus 4 Niastella 354354 2765 0 1 2 1 2761 0 species Niastella koreensis 354356 1931 0 genus 1 1769012 Arachidicoccus 2 1 1 0 1930 2636138 no rank 1850526 Arachidicoccus sp. BS20 species 0 1930 1 2 genus Chitinophaga 79328 5458 0 1 3 1 3020 0 species Chitinophaga pinensis 79329 2436 0 species Chitinophagaceae bacterium 13 2029983 1 1 2 genus 10 Flavisolibacter 398041 1522 0 species 1492898 Flavisolibacter tropicus 1512 0 1 2767 0 phylum 1134404 7 class 4 Ignavibacteria 795747 2767 0 1 7 Ignavibacteriales 795748 order 18 0 2763 1 6 1 3 3 family 1334117 Melioribacteraceae 1150 0 1 2 genus 4 1134403 Melioribacter 1147 0 1 0 1143 Melioribacter roseus 1134405 species 795749 family 0 1595 2 1 2 genus 1 Ignavibacterium 795750 1595 0 1 species 591197 Ignavibacterium album 1594 0 22 20112 0 phylum 1090 0 20112 191410 Chlorobia class 132 22 1 order 188 191411 Chlorobiales 19980 0 1 21 161 family Chlorobiaceae 191412 19792 0 1 20 no rank 274493 7170 0 8 3 1 0 3056 1099 Pelodictyon genus 20 1 1811 0 species Pelodictyon luteolum 1100 species 34090 Pelodictyon phaeoclathratiforme 1225 0 1 5 1 4114 0 genus 9 1091 Chlorobium 0 824 Chlorobium chlorochromatii 337090 species 1 1 1094 Chlorobium phaeovibrioides species 0 800 species Chlorobium limicola 1092 1009 0 1 1 0 1472 Chlorobium phaeobacteroides 1096 species 1 2 Chloroherpeton 100715 6 genus 0 738 100716 Chloroherpeton thalassium species 0 732 1 6942 0 89 genus Chlorobaculum 256319 4 1 1 1097 Chlorobaculum tepidum species 0 1717 1 0 2882 274537 Chlorobaculum limnaeum species 1 274539 Chlorobaculum parvum species 0 2254 1101 Prosthecochloris genus 53 0 4781 1 5 3 3713 0 no rank 2632826 1 1783 0 species Prosthecochloris sp. GSB1 281093 1868325 Prosthecochloris sp. CIB 2401 species 0 849 1 Prosthecochloris sp. HL-130-GSB 1974213 species 0 1081 1 0 1015 Prosthecochloris aestuarii 1102 species 1 65842 phylum 0 2863 5 3 class Fibrobacteria 204430 2863 0 1 5 12 order 218872 Fibrobacterales 2860 0 1 4 2848 0 family 3 Fibrobacteraceae 204431 3 1 genus 1 832 Fibrobacter 2845 0 1 2 833 Fibrobacter succinogenes species 0 2844 1 phylum 456828 714 0 2 36 genus 456826 Candidatus Cloacimonas 714 0 1 2 1 species 456827 Candidatus Cloacimonas acidaminovorans 678 0 9 phylum 74152 3119 0 6 1 0 1575 447830 Endomicrobia 1 class 1 5 1783344 Endomicrobiales order 2 0 1574 4 1 0 1572 Endomicrobiaceae 1783343 3 family genus 1 1408194 Endomicrobium 1569 0 1 3 0 616 1408204 Candidatus Endomicrobium trichonymphae species 1 1 0 952 1408281 Endomicrobium proavitum species no rank 99260 616 0 1 167965 uncultured Termite group 1 bacterium species 0 616 1 641853 class 0 928 2 641854 order 0 928 2 641876 family 0 928 2 2 1 0 928 423604 Elusimicrobium genus 1 1 species 423605 Elusimicrobium minutum 927 0 22188 0 phylum 200918 43 43 1 22188 0 23 class 188708 Thermotogae 6782 0 order 1643947 7 7 0 6782 1643949 family 3739 0 genus 17 Marinitoga 160798 3 1 1876 0 no rank 2640159 1 species Marinitoga sp. 1137 1545835 1876 0 1 1846 0 species 149715 Marinitoga piezophila 1 0 1374 Petrotoga 28236 genus 11 2 1 1 1363 0 species 69499 Petrotoga mobilis 1 2 Defluviitoga 1511648 5 genus 0 1669 Defluviitoga tunisiensis 1006576 species 0 1664 1 1 7 1643946 Kosmotogales 1 order 0 1464 1 6 Kosmotogaceae 1643948 family 11 0 1463 2 1 0 425 1184396 Mesotoga genus 3 1 1184387 Mesotoga prima species 0 422 3 1 1027 0 4 genus 651456 Kosmotoga 1 0 528 Kosmotoga olearia 651457 species 1 1330330 Kosmotoga pacifica species 0 495 Thermotogales 2419 order 22 0 13919 1 28 Fervidobacteriaceae 1643950 family 18 0 6460 1 10 Thermosipho 2420 8 genus 0 4161 1 5 2 1834 0 no rank 2676525 0 910 1462747 Thermosipho sp. 1063 species 1 924 0 species 1437364 Thermosipho sp. 1070 1 1 0 865 Thermosipho melanesiensis 46541 species 1 species Thermosipho africanus 2421 1454 0 genus 10 Fervidobacterium 2422 2281 0 1 4 675 0 species Fervidobacterium islandicum 2423 1 Fervidobacterium pennivorans 93466 species 0 901 1 695 0 species Fervidobacterium nodosum 2424 1 17 1 0 7437 Thermotogaceae 188709 family 16 90 genus Pseudothermotoga 1643951 2345 0 1 5 1 676 0 species 57487 Pseudothermotoga hypogea 1 Pseudothermotoga lettingae 177758 species 0 551 627 0 species Pseudothermotoga elfii 38322 1 1 Pseudothermotoga thermarum 119394 species 0 401 5076 0 genus 111 Thermotoga 2335 11 1 1 0 494 Thermotoga naphthophila 93930 species 4 2631113 no rank 0 1778 567 0 species Thermotoga sp. RQ7 126738 1 329 0 species 1157948 Thermotoga sp. 2812B 1 1 0 476 1157947 Thermotoga sp. Cell2 species 126740 Thermotoga sp. RQ2 species 0 406 1 2336 Thermotoga maritima species 0 442 1 1 species Thermotoga petrophila 93929 394 0 1 species 1508420 Thermotoga profunda 670 0 1 species 1508419 Thermotoga caldifontis 548 0 1 species Thermotoga neapolitana 2337 639 0 4 0 1936 68297 phylum class 3 Dictyoglomia 203486 1936 0 1 4 0 1933 Dictyoglomales 203487 7 order 3 1 2 203488 family 0 1926 2 0 1926 13 genus 844 0 species Dictyoglomus turgidum 513050 1 Dictyoglomus thermophilum 14 species 0 1082 1 2 0 443 2138240 phylum 443 0 class 2138243 2 2138246 order 0 443 2 2 1 0 443 Coprothermobacteraceae 2138247 family 6 1 genus 68335 437 0 437 0 species Coprothermobacter proteolyticus 35786 1 64181 0 phylum 32066 25 0 64181 203490 Fusobacteriia 34 class 25 1 24 1 64147 0 order 76 203491 Fusobacteriales 47219 0 family 189 203492 Fusobacteriaceae 12 1 1 2 4 genus Ilyobacter 167639 1623 0 1619 0 species Ilyobacter polytropus 167642 1 848 Fusobacterium 103 genus 0 45407 1 9 species Fusobacterium hwasookii 1583098 4621 0 1 1 0 3598 861 Fusobacterium ulcerans species 1 850 Fusobacterium mortiferum species 0 3611 Fusobacterium varium 856 species 0 6624 1 1 species 849 Fusobacterium gonidiaformans 2009 0 species Fusobacterium necrophorum 859 1432 0 1 851 Fusobacterium nucleatum species 0 14726 1 8683 0 species 860 Fusobacterium periodonticum 1 1 11 29 family Leptotrichiaceae 1129771 16852 0 34104 Streptobacillus genus 10 0 2624 1 2 1 Streptobacillus moniliformis 34105 species 0 2614 0 2574 168808 Sneathia 6 genus 2 1 0 2568 Sneathia amnii 187101 species 1 1 5 35 genus Leptotrichia 32067 8950 0 1 species Leptotrichia buccalis 40542 1982 0 3 6933 0 no rank 2633022 1 0 2614 Leptotrichia sp. oral taxon 498 712368 species 1 1891 0 species Leptotrichia sp. oral taxon 847 1785996 1 712357 Leptotrichia sp. oral taxon 212 species 0 2428 1 genus 32068 2675 0 2675 0 species Sebaldella termitidis 826 1 9 2837 0 phylum 200940 2837 0 3 class 67799 Thermodesulfobacteria 9 1 0 2834 Thermodesulfobacteriales 188710 order 7 8 1 1 7 7 family 188711 Thermodesulfobacteriaceae 2827 0 0 688 241192 Thermodesulfatator 4 genus 2 1 684 0 species Thermodesulfatator indicus 171695 1 2 genus 1740 Thermodesulfobacterium 1734 0 1 3 1 1237 0 species Thermodesulfobacterium geofontis 1295609 0 495 Thermodesulfobacterium commune 1741 species 1 1 444090 genus 0 398 1 species 1653476 Caldimicrobium thiodismutans 398 0 21 1 0 14927 Acidobacteria 57723 2 phylum 17 1 13790 0 class 141 204432 Acidobacteriia 12 1 10660 0 156 order 204433 Acidobacteriales 10504 0 162 family Acidobacteriaceae 204434 11 1 0 2222 33973 Acidobacterium genus 17 2 1 2205 0 species Acidobacterium capsulatum 33075 1 3 1 0 3322 Granulicella 940557 47 genus 1814 0 species 940614 Granulicella mallensis 1 1 species Granulicella tundricola 940615 1461 0 3 1 0 2880 392733 Terriglobus genus 29 1 0 1630 Terriglobus roseus 392734 species 1 1221 0 species 870903 Terriglobus saanensis 1918 0 13 genus Candidatus Koribacter 658061 2 1 1905 0 species Candidatus Koribacter versatilis 658062 1 4 1 0 2989 Solibacterales 332160 order 53 1 3 Solibacteraceae 332161 family 34 0 2936 1 2 genus 80 Candidatus Solibacter 332162 2902 0 species Candidatus Solibacter usitatus 332163 2822 0 1 3 1 0 1135 1562566 Blastocatellia 5 class 1130 0 genus 9 Chloracidobacterium 458032 2 1 458033 Chloracidobacterium thermophilum species 0 1121 1 13 0 6754 40117 phylum 1 13 Nitrospira 203693 27 class 0 6754 1 12 71 order 189778 Nitrospirales 6727 0 11 1 0 6656 Nitrospiraceae 189779 family 31 4 1 1387 0 11 genus 179 Leptospirillum 1 261386 species group 0 531 1 Leptospirillum ferriphilum 178606 species 0 531 1 482 0 species group 261385 482 0 species Leptospirillum sp. Group II 'CF-1' 1660083 1 1 363 0 species group 655606 1 180 Leptospirillum ferrooxidans species 0 363 1 genus 28261 964 0 1 28262 Thermodesulfovibrio yellowstonii species 0 964 4274 0 23 genus 1234 Nitrospira 5 1 1 species 1325564 Nitrospira japonica 913 0 1 species Candidatus Nitrospira inopinata 1715989 855 0 1 species Nitrospira defluvii 330214 954 0 1 1529 0 species Nitrospira moscoviensis 42253 0 2804792 1224 Proteobacteria 1279 phylum 2037 1 5 class 580370 2359 0 2359 0 18 order Mariprofundales 580371 5 1 1 4 4 family 580372 Mariprofundaceae 2341 0 3 1 2337 0 17 genus Mariprofundus 377315 1 1021 0 species Mariprofundus aestuarium 1921086 1 0 1299 Mariprofundus ferrinatatus 1921087 species 1 352 class 1324 Betaproteobacteria 28216 647500 0 1 235 80840 Burkholderiales order 5276 0 536925 Alcaligenaceae 506 650 family 0 85569 1 43 673 0 genus 3 Basilea 1472344 2 1 1 0 670 1472345 Basilea psittacipulmonis species 1 3 genus 1 29574 Taylorella 1073 0 586 0 species Taylorella equigenitalis 29575 1 Taylorella asinigenitalis 84590 species 0 486 1 1 2 genus 17 Alcaligenes 507 2522 0 2505 0 species Alcaligenes faecalis 511 1 1948 0 15 genus 290425 Advenella 3 1 1 310575 Advenella kashmirensis species 0 896 1 1037 0 species 302406 Advenella mimigardefordensis 1 1100891 genus 0 459 459 0 species 643674 Paenalcaligenes hominis 1 100 genus Castellaniella 359336 2630 0 1 2 1 species Castellaniella defragrans 75697 2530 0 0 2875 1921582 Orrella 57 genus 2 1 1 Orrella dioscoreae 1851544 species 0 2818 6 1 31566 0 1107 genus Achromobacter 222 1 species 217204 Achromobacter insolitus 2506 0 1 2626865 no rank 0 3362 0 3362 Achromobacter sp. AONIH1 1758194 species 1 1 species Achromobacter spanius 217203 5422 0 1 0 12531 85698 Achromobacter xylosoxidans species 1 0 6638 Achromobacter denitrificans 32002 species 2 1 1279 0 9 genus 305976 Pusillimonas 1 no rank 2640016 1270 0 1 1270 0 species Pusillimonas sp. T7-7 1007105 39040 0 genus 1373 Bordetella 517 17 1 species Bordetella petrii 94624 2034 0 1 2273 0 species 1331258 Bordetella pseudohinzii 1 2939 0 species 463025 Bordetella bronchialis 1 species Bordetella trematum 123899 1956 0 1 1 4196 0 species Bordetella bronchiseptica 518 1 species 463014 Bordetella flabilis 2683 0 1 Bordetella parapertussis 519 species 0 2421 Bordetella holmesii 35814 species 0 1052 1 1 Bordetella avium 521 species 0 1250 1 Bordetella genomosp. 6 463024 species 0 2542 1 no rank 2630031 2532 0 species Bordetella sp. H567 1697043 2532 0 1 463040 Bordetella genomosp. 13 species 0 2565 1 0 2126 Bordetella genomosp. 9 1416803 species 1 Bordetella hinzii 103855 species 0 2549 1 2676 0 species 1416806 Bordetella genomosp. 8 1 1 1873 0 species Bordetella pertussis 520 1 2 genus 28 Oligella 90243 854 0 0 826 90245 Oligella urethralis species 1 119060 Burkholderiaceae 1452 family 0 189119 1 84 1822464 Paraburkholderia genus 565 0 23812 1 12 2214 0 species Paraburkholderia hospita 169430 1 1 2017 0 species 2026199 Paraburkholderia aromaticivorans 1 0 2030 311230 Paraburkholderia terrae species 1 species 148447 Paraburkholderia phymatum 2187 0 1 0 1910 261302 Paraburkholderia phytofirmans species 0 2061 Paraburkholderia xenovorans 36873 species 1 1 0 2119 252970 Paraburkholderia phenoliruptrix species Paraburkholderia sprentiae 948107 species 0 2055 1 1 Paraburkholderia caribensis 75105 species 0 3311 2615204 no rank 0 1550 1 0 1550 Paraburkholderia sp. SOS3 1926494 species 1 1 1793 0 species 134537 Paraburkholderia fungorum 1 9 Cupriavidus 106589 1066 genus 0 25842 1 species 367825 Cupriavidus sp. USMAA1020 3371 0 1 2310 0 species Cupriavidus gilardii 82541 Cupriavidus metallidurans 119219 species 0 2569 1 2 7013 0 no rank 2640874 1 species 1389192 Cupriavidus sp. USMAHM13 3371 0 1 species Cupriavidus sp. USMAA2-4 876364 3642 0 1 Cupriavidus pinatubonensis 248026 species 0 2033 2638 0 species Cupriavidus basilensis 68895 1 1 Cupriavidus necator 106590 species 0 4842 4 1 0 1116 44013 Polynucleobacter 16 genus 0 496 Polynucleobacter asymbioticus 576611 species 1 0 353 Polynucleobacter duraquae 1835254 species 1 251 0 species 576610 Polynucleobacter necessarius 1 0 19292 48736 Ralstonia 451 genus 5 1 species Ralstonia insidiosa 190721 2812 0 1 4431 0 species Ralstonia pickettii 329 1 1 3099 0 species 105219 Ralstonia mannitolilytica 305 Ralstonia solanacearum species 0 8499 1 2571159 genus 0 945 1 1 Paraburkholderia rhizoxinica 412963 species 0 945 genus 5376 Burkholderia 32008 99282 0 1 41 1 4168 0 species Burkholderia gladioli 28095 0 14954 111527 species group 7 1 0 1330 1637831 Burkholderia sp. MSMB617WGS species species 1637841 Burkholderia sp. MSMB0852 1413 0 1 1 1473 0 species 1637837 Burkholderia sp. MSMB0266 species 57975 Burkholderia thailandensis 3562 0 1 0 3886 28450 Burkholderia pseudomallei species 1 1 Burkholderia oklahomensis 342113 species 0 1771 species Burkholderia mallei 13373 1519 0 1 11 no rank 2613784 18599 0 1 0 1399 1795874 Burkholderia sp. PAMC 28687 species 1 species 1795043 Burkholderia sp. PAMC 26561 1180 0 1 0 1497 416344 Burkholderia sp. KJ006 species 1 1432 0 species Burkholderia sp. 2002721687 1468409 1740163 Burkholderia sp. Bp7605 species 0 1710 1 1 species Burkholderia sp. YI23 1097668 2096 0 Burkholderia sp. CCGE1003 640512 species 0 1649 1 1409 0 species 1740162 Burkholderia sp. Bp5365 1 1 2251 0 species 758796 Burkholderia sp. RPE67 1851 0 species Burkholderia sp. HB1 1678678 1 species Burkholderia sp. CCGE1001 640510 2125 0 1 2685 0 species 41899 Burkholderia plantarii 1 19 87882 species group 0 48974 1 species 60550 Burkholderia pyrrocinia 968 0 1 1057 0 species 1503055 Burkholderia territorii 1 60552 Burkholderia vietnamiensis species 0 2504 species 292 Burkholderia cepacia 8243 0 1 Burkholderia lata 482957 species 0 2446 1 1618 0 species 488447 Burkholderia contaminans 1 1470 0 species Burkholderia seminalis 488731 1 Burkholderia ambifaria 152480 species 0 2035 1 1 0 1073 Burkholderia diffusa 488732 species 1 species Burkholderia metallica 488729 1735 0 0 1454 Burkholderia dolosa 152500 species 1 1 3754 0 species 87883 Burkholderia multivorans 1 0 4612 101571 Burkholderia ubonensis species 1418 0 species 265293 [Pseudomonas] mesoacidophila 1 1673 0 species 1207504 Burkholderia pseudomultivorans 1 0 1380 Burkholderia latens 488446 species 1 1 95486 Burkholderia cenocepacia species 0 7581 1 0 1470 Burkholderia stagnalis 1503054 species 1 2483 0 species 95485 Burkholderia stabilis 0 4526 Burkholderia glumae 337 species 1 genus 1827195 2143 0 1 1 0 2143 Burkholderia sp. RPE64 758793 species 15235 0 genus 407 Pandoraea 93217 10 1 1 93221 Pandoraea pulmonicola species 0 1825 1 species 93219 Pandoraea norimbergensis 1672 0 species Pandoraea pnomenusa 93220 1913 0 1 1 species 445709 Pandoraea thiooxydans 1413 0 1 species Pandoraea vervacti 656178 1711 0 1 species 573737 Pandoraea oxalativorans 1716 0 Pandoraea apista 93218 species 0 1405 1 Pandoraea sputorum 93222 species 0 1640 1 1 0 1533 Pandoraea faecigallinarum 656179 species no rank 80841 4048 0 2 2363 0 species 1834205 Burkholderiales bacterium YL45 1 1 1469502 Burkholderiales bacterium GJ-E10 species 0 1685 17 0 26768 224471 no rank 1 2 genus 52 318147 Paucibacter 2271 0 2219 0 no rank 2642959 1 1 species 1768242 Paucibacter sp. KCTC 42545 2219 0 2 1 0 2952 93681 Roseateles genus 92 0 2860 Roseateles depolymerans 76731 species 1 1 2468 0 species 413882 [Polyangium] brachysporum 1 2 Leptothrix 88 genus 81 0 2871 Leptothrix cholodnii 34029 species 0 2790 1 2 1 0 4299 28067 Rubrivivax 124 genus Rubrivivax gelatinosus 28068 species 0 4175 1 2 1 3138 0 genus 104 Mitsuaria 65047 1 2648776 no rank 0 3034 1 0 3034 1658665 Mitsuaria sp. 7 species 2 1 0 3211 212743 Rhizobacter genus 98 1 0 3113 Rhizobacter gummiphilus 946333 species 0 3153 32012 Thiomonas genus 106 2 1 Thiomonas intermedia 926 species 0 3047 1 1 2 Methylibium 316612 genus 70 0 2405 species 105560 Methylibium petroleiphilum 2335 0 1 family 1961 80864 Comamonadaceae 114142 0 1 59 2 1 0 2906 Melaminivora 1649468 genus 82 2824 0 no rank 2641902 1 0 2824 Melaminivora sp. SC2-9 2109913 species 1 3 1 1796 0 6 genus Limnohabitans 665874 0 1790 2626134 no rank 2 627 0 species Limnohabitans sp. 103DPR2 1678129 1 1 1163 0 species Limnohabitans sp. 63ED37-2 1678128 3 1 4313 0 genus 50 52972 Polaromonas 1 2319 0 species 216465 Polaromonas naphthalenivorans 1944 0 no rank 2638319 1 species Polaromonas sp. JS666 296591 1944 0 1 1 5 693 genus Delftia 80865 15584 0 0 7297 2613839 no rank 2 species 742013 Delftia sp. Cs1-4 3699 0 1 1 species Delftia sp. HK171 1920191 3598 0 1 species 180282 Delftia tsuruhatensis 3787 0 1 3807 0 species 80866 Delftia acidovorans 296 genus 34072 Variovorax 17076 0 1 5 1 3561 0 species 436515 Variovorax boronicumulans 5557 0 no rank 663243 2 1 2126319 Variovorax sp. PMC12 species 0 4050 1 Variovorax sp. PAMC 28711 1795631 species 0 1507 1 34073 Variovorax paradoxus species 0 7662 1436289 Candidatus Symbiobacter genus 5 0 1008 1 2 1 0 1003 1436290 Candidatus Symbiobacter mobilis species 5 1 0 7860 Rhodoferax 28065 genus 84 1 1696 0 species Rhodoferax antarcticus 81479 1842727 Rhodoferax koreense species 0 2877 1 0 1377 192843 Rhodoferax ferrireducens species 1 1 1826 0 species Rhodoferax saidenbachensis 1484693 Acidovorax 12916 693 genus 0 20039 1 9 1 2258 0 species 721785 Acidovorax ebreus 0 9342 2684926 no rank 4 1 2719 0 species Acidovorax sp. KKS102 358220 Acidovorax sp. RAC01 1842533 species 0 2248 1 2177 0 species 232721 Acidovorax sp. JS42 1 species 1858609 Acidovorax sp. T1 2198 0 1 0 1700 553814 Acidovorax sp. NA3 species 1 1 3062 0 species Acidovorax citrulli 80869 0 2984 80867 Acidovorax avenae species 1 7 genus 364316 Verminephrobacter 2144 0 1 2 species 364317 Verminephrobacter eiseniae 2137 0 1 2 genus 2490452 2831 0 0 1184 Comamonadaceae bacterium A1 1458425 species 1 0 1647 1458426 Comamonadaceae bacterium B1 species 1 Hydrogenophaga 47420 157 genus 0 6813 1 4 1 1467 0 species Hydrogenophaga crassostreae 1763535 2 5189 0 no rank 2610897 0 2068 Hydrogenophaga sp. RAC07 1842537 species 1 Hydrogenophaga sp. PBC 795665 species 0 3121 1 1 0 2654 2678886 genus Melaminivora sp. SC2-7 2116657 species 0 2654 1 0 2169 238749 Diaphorobacter 7 genus 2 1 1 1546149 Diaphorobacter polyhydroxybutyrativorans species 0 2162 0 3708 201096 Alicycliphilus 17 genus 2 1 1 0 3691 Alicycliphilus denitrificans 179636 species Ottowia 219181 43 genus 0 4216 1 3 2645081 no rank 0 1845 1 1845 0 species 1658672 Ottowia sp. oral taxon 894 1 1 0 2328 2109914 Ottowia sp. KADR8-3 species 1 4 genus 55 Comamonas 283 9207 0 0 2247 Comamonas kerstersii 225992 species 1 1 4246 0 species Comamonas testosteroni 285 0 2659 1082851 Comamonas serinivorans species 1 0 5824 Ramlibacter 174951 38 genus 2 1 94132 Ramlibacter tataouinensis species 0 5786 1 genus 20 Simplicispira 352450 2033 0 1 2 species Simplicispira sp. SC1-8 2109915 2013 0 1 0 112003 75682 Oxalobacteraceae 488 family 29 1 6 1 13478 0 genus 631 963 Herbaspirillum 1 0 1513 2624150 no rank 1513 0 species 2025949 Herbaspirillum sp. meg3 1 1 Herbaspirillum seropedicae 964 species 0 3100 3481 0 species Herbaspirillum frisingense 92645 1 1 2089 0 species 341045 Herbaspirillum hiltneri 1 2664 0 species Herbaspirillum rubrisubalbicans 80842 genus 1 846 Oxalobacter 61669 0 1 2 1 61668 0 species 847 Oxalobacter formigenes 1 3 303379 Herminiimonas 26 genus 0 1417 1 0 695 Herminiimonas arsenitoxidans 1809410 species species 204773 Herminiimonas arsenicoxydans 696 0 1 11783 0 135 genus Janthinobacterium 29580 7 1 1 species 55508 Janthinobacterium agaricidamnosum 1888 0 4 7104 0 no rank 2610881 0 2325 1938606 Janthinobacterium sp. LM6 species 1 Janthinobacterium sp. Marseille 375286 species 0 1022 1 1 Janthinobacterium sp. B9-8 1236179 species 0 906 1 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 2851 0 species 368607 Janthinobacterium svalbardensis 2656 0 1 4 1 0 7353 Collimonas 202907 176 genus 1 158899 Collimonas fungivorans species 0 2464 1 0 2589 279058 Collimonas arenae species 1 species 279113 Collimonas pratensis 2124 0 15815 0 genus 531 149698 Massilia 6 1 species Massilia sp. ZMN-3 2072590 3609 0 1 1 Massilia sp. B2 2045208 species 0 2250 1 0 3174 1141883 Massilia putida species 0 6251 2609279 no rank 2 3174 0 species 1678028 Massilia sp. NR 4-1 1 1 3077 0 species 1707785 Massilia sp. WG5 1 22 order 549 Rhodocyclales 206389 33086 0 3 1 1791 0 37 family Azonexaceae 2008795 1 2 73029 Dechloromonas 22 genus 0 1754 1 Dechloromonas aromatica 259537 species 0 1732 0 23804 2008794 Zoogloeaceae family 609 12 1 0 13239 33057 Thauera genus 394 6 1 1 1818 0 species Thauera chlorobenzoica 96773 1 species 59405 Thauera aromatica 2125 0 no rank 2609274 6312 0 2 Thauera sp. MZ1T 85643 species 0 3103 1 species Thauera sp. K11 2005884 3209 0 1 1 0 2590 Thauera humireducens 1134435 species 5 1 0 9956 12960 Azoarcus genus 353 2 2629479 no rank 0 5254 1 0 2856 Azoarcus sp. KH32C 748247 species 0 2398 198107 Azoarcus sp. CIB species 1 2254 0 species 2067960 Azoarcus sp. SY39 1 1 0 2095 Azoarcus olearius 418699 species 6 1 6942 0 150 family 75787 Rhodocyclaceae genus 39 551759 Aromatoleum 1814 0 1 2 1 551760 Aromatoleum aromaticum species 0 1775 1 2 Azospira 146937 77 genus 0 3449 1 3372 0 species 146939 Azospira oryzae 1 no rank 75788 1529 0 1 0 1529 Rhodocyclaceae bacterium 1898103 species 11 0 5030 119066 no rank genus 189384 104 0 1 1 104 0 species 189385 Candidatus Tremblaya princeps 33055 Kinetoplastibacterium genus 42 0 2535 1 6 1 341 0 species 233181 Kinetoplastibacterium blastocrithidii Candidatus Kinetoplastibacterium desouzaii 994692 species 0 793 1 species Candidatus Kinetoplastibacterium crithidii 33056 445 0 1 1 0 547 994695 Candidatus Kinetoplastibacterium galatii species Candidatus Kinetoplastibacterium oncopeltii 994696 species 0 367 1 118 0 genus 1301080 1 1 species 1160784 Candidatus Nasuia deltocephalinicola 118 0 1 2 Candidatus Accumulibacter 327159 33 genus 0 1929 1 0 1896 327160 Candidatus Accumulibacter phosphatis species 1 1381133 genus 0 344 0 344 669502 Candidatus Profftella armatura species 1 46040 0 order 571 Neisseriales 206351 37 1 22746 0 403 family 1499392 Chromobacteriaceae 13 1 Aquaspirillum 187 24 genus 0 2347 1 2 2323 0 no rank 2620219 1 1 1938604 Aquaspirillum sp. LM1 species 0 2323 4 90153 no rank 0 11324 1 4 228 genus Chromobacterium 535 11324 0 3209 0 no rank 2641838 1 0 3209 Chromobacterium sp. ATCC 53434 2059672 species 1 3459 0 species 536 Chromobacterium violaceum 1 1108595 Chromobacterium vaccinii species 0 4428 1 1 2 Jeongeupia 885864 genus 34 0 2495 2461 0 no rank 2619593 1 species Jeongeupia sp. USM3 1906741 2461 0 1 2863 0 46 genus Laribacter 168470 2 1 1 species 168471 Laribacter hongkongensis 2817 0 1 2 genus 68 568394 Pseudogulbenkiania 3314 0 0 3246 2642558 no rank 1 3246 0 species Pseudogulbenkiania sp. NH8B 748280 1 23 1 22723 0 family 186 481 Neisseriaceae 0 626 Simonsiella 71 6 genus 2 1 72 Simonsiella muelleri species 0 620 1 no rank 421605 603 0 1 Neisseriaceae bacterium DSM 100970 2052837 species 0 603 1 0 1085 1193515 Snodgrassella genus 1 2 1 0 1084 1196083 Snodgrassella alvi species 1 3 1 1963 0 76 genus 59 Vitreoscilla 1 469 0 no rank 2627922 1 species Vitreoscilla sp. C1 96942 469 0 1418 0 species 63 Vitreoscilla filiformis 1 1 2 genus 19 Eikenella 538 1367 0 1 1348 0 species Eikenella corrodens 539 440 genus 482 Neisseria 16893 0 1 12 Neisseria mucosa 488 species 0 1142 1 1 28091 Neisseria weaveri species 0 874 1 1853278 Neisseria sp. 10023 species 0 1286 0 3142 2623750 no rank 2 0 873 Neisseria sp. 10022 1853276 species 1 1 0 2269 655307 Neisseria sp. KEM232 species 485 Neisseria gonorrhoeae species 0 1126 1 857 0 species 326523 Neisseria zoodegmatis 1 1 0 3846 487 Neisseria meningitidis species 1 1319 0 species 490 Neisseria sicca 1 1603 0 species Neisseria lactamica 486 1258 0 species 495 Neisseria elongata 1 22410 0 145 order 32003 Nitrosomonadales 44 1 1 5 90627 Gallionellaceae 58 family 0 2652 314343 Sideroxydans 45 genus 0 1625 1 2 1580 0 species Sideroxydans lithotrophicus 63745 1 12 genus Gallionella 96 969 0 1 2 1 957 0 species 370405 Gallionella capsiferriformans 4 2772226 family 0 2416 1099 0 45 genus Sulfuricella 935200 2 1 0 1054 Sulfuricella denitrificans 649841 species 1 2 1 1317 0 genus 24 Sulfuriferula 1778653 1 0 1293 2637784 no rank species Sulfuriferula sp. AH1 1985873 1293 0 1 117 family 2008793 Sterolibacteriaceae 4175 0 1 5 1 2 1054211 Sulfuritalea genus 56 0 2245 1 2189 0 species 748811 Sulfuritalea hydrogenivorans 1 2 genus 32 378210 Methyloversatilis 1813 0 1 no rank 2639971 1781 0 1781 0 species Methyloversatilis sp. RAC08 1842540 1 5206 0 46 family Methylophilaceae 32011 14 1 3 1 0 850 1679002 Candidatus Methylopumilus genus 4 Candidatus Methylopumilus planktonicus 1581557 species 0 576 1 1 species 1581680 Candidatus Methylopumilus turicensis 270 0 3 1 0 931 Methylotenera 359407 genus 7 species Methylotenera mobilis 359408 414 0 1 1055487 Methylotenera versatilis species 0 510 1 1 2 16 Methylophilus genus 3 0 521 no rank 2630143 518 0 1 species 1662285 Methylophilus sp. TWE2 518 0 1 1 3 Methylovorus 81682 37 genus 0 1689 824 0 species 266009 Methylovorus glucosotrophus 1 1 no rank 2634027 828 0 1 species 887061 Methylovorus sp. MP688 828 0 404 Methylobacillus 12 genus 0 1169 1 2 1 1157 0 species Methylobacillus flagellatus 405 1643 0 family 24 Thiobacillaceae 2008790 3 1 2 1 1619 0 30 genus Thiobacillus 919 1 36861 Thiobacillus denitrificans species 0 1589 1 12 family 54 206379 Nitrosomonadaceae 6173 0 7 1 0 3894 Nitrosomonas 914 genus 23 2 2609265 no rank 0 1170 1 0 535 Nitrosomonas sp. Is79A3 261292 species 1 0 635 Nitrosomonas sp. AL212 153948 species 1 species 916 Nitrosomonas eutropha 651 0 1 Nitrosomonas communis 44574 species 0 657 1 0 706 Nitrosomonas europaea 915 species 1 0 687 Nitrosomonas ureae 44577 species 4 1 2225 0 genus 24 35798 Nitrosospira 1 761 0 species Nitrosospira lacus 1288494 35799 Nitrosospira briensis species 0 865 1 1 Nitrosospira multiformis 1231 species 0 575 2 33809 no rank 0 2685 0 561 543913 beta proteobacterium CB species 1 0 2124 1904640 Betaproteobacteria bacterium GR16-43 species 1 1 564 2439 class 28211 Alphaproteobacteria 643858 0 4 1 958 0 order 13 1191478 Magnetococcales 1 3 1191479 Magnetococcaceae 5 family 0 945 0 940 Magnetococcus 162171 genus 3 2 1 1 0 937 Magnetococcus marinus 1124597 species 8 1 0 4224 Pelagibacterales 54526 7 order genus 2045213 783 0 1 1 Candidatus Fonsibacter ubiquis 1925548 species 0 783 6 1 0 3434 1655514 Pelagibacteraceae family 5 2 0 1796 1655516 no rank 1079 0 species alpha proteobacterium HIMB5 859653 1 717 0 species alpha proteobacterium HIMB59 744985 1 1633 0 1 genus Candidatus Pelagibacter 198251 3 1 2647897 no rank 0 463 1 0 463 1002672 Candidatus Pelagibacter sp. IMCC9063 species 1 1 1169 0 species Candidatus Pelagibacter ubique 198252 2 order 2800059 1162 0 2 2800061 family 0 1162 2 1 0 1162 Maricaulis 74317 genus 23 Maricaulis maris 74318 species 0 1139 1 281082 0 3012 order Rhizobiales 356 212 1 1 26 Bradyrhizobiaceae 41294 family 621 0 55917 1 3 Nitrobacter 911 11 genus 0 1830 1010 0 species 912 Nitrobacter hamburgensis 1 1 0 809 913 Nitrobacter winogradskyi species 2 1 1268 0 18 genus Oligotropha 40136 1 0 1250 40137 Oligotropha carboxidovorans species genus 143 Rhodopseudomonas 1073 12133 0 1 2 1 0 11990 Rhodopseudomonas palustris 1076 species 11 1 28458 0 genus 792 374 Bradyrhizobium 0 4880 Bradyrhizobium diazoefficiens 1355477 species 1 1 0 2373 44255 Bradyrhizobium oligotrophicum species 1 Bradyrhizobium japonicum 375 species 0 4179 2631580 no rank 0 14486 6 species 2057741 Bradyrhizobium sp. SK17 2085 0 1 Bradyrhizobium sp. CCGE-LA001 1223566 species 0 2678 1 2619 0 species 114615 Bradyrhizobium sp. ORS 278 1 1 2560 0 species Bradyrhizobium sp. BTAi1 288000 0 2240 Bradyrhizobium sp. 376 species 1 1 0 2304 115808 Bradyrhizobium sp. ORS 285 species 1 0 1748 1274631 Bradyrhizobium icense species 0 1121 Variibacter 1649510 genus 24 2 1 1 0 1097 1333996 Variibacter gotjawalensis species 5 1 10486 0 genus 185 Bosea 85413 species Bosea vaviloviae 1526658 2773 0 1 2653178 no rank 0 7528 3 1 2463 0 species Bosea sp. PAMC 26642 1792307 1 species 2015316 Bosea sp. AS-1 2205 0 1 0 2860 Bosea sp. RAC05 1842539 species 0 2176 45404 Beijerinckiaceae 3 family 5 1 1 2 Methylocella 120652 24 genus 0 1102 1 0 1078 199596 Methylocella silvestris species 532 Beijerinckia 4 genus 0 1071 1 2 1 0 1067 533 Beijerinckia indica species 7 1 0 8740 Aurantimonadaceae 255475 family 37 26 genus Aureimonas 414371 2008 0 1 2 1 2615206 no rank 0 1982 1 species 1349819 Aureimonas sp. AU20 1982 0 155 genus Martelella 293088 6695 0 1 4 Martelella mediterranea 293089 species 0 2203 1 0 2249 2629616 no rank 1 species 686597 Martelella sp. AD-3 2249 0 1 1 0 2088 Martelella endophytica 1486262 species 20 1 10714 0 family 34 Brucellaceae 118882 genus 1708 Brucella 234 5557 0 1 14 0 238 235 Brucella abortus species 1 1 0 122 444163 Brucella microti species 4 1617 0 no rank 2632610 1 437 0 species 1149952 Brucella sp. 09RB8471 659 0 species Brucella sp. 141012304 1885919 1 1 Brucella sp. 09RB8910 1844051 species 0 389 1 132 0 species 1891098 Brucella sp. 2002734562 1 130 0 species 29459 Brucella melitensis 1 0 332 Brucella canis 36855 species 1 338 0 species Brucella pinnipedialis 120576 1 species Brucella ceti 120577 357 0 1 species 236 Brucella ovis 123 0 0 426 981386 Brucella vulpis species 1 0 166 Brucella suis 29461 species 1 Ochrobactrum 528 genus 94 0 5123 1 5 1 1190 0 species 271865 Ochrobactrum sp. A44 0 1363 571256 Ochrobactrum pituitosum species 1 Ochrobactrum anthropi 529 species 0 1546 1 1 419475 Ochrobactrum pseudogrignonense species 0 930 3 1 0 1400 Rhodobiaceae 119043 family 6 2 1 1394 0 genus 27 Parvibaculum 256616 1 0 1367 Parvibaculum lavamentivorans 256618 species 0 18770 45401 Hyphomicrobiaceae family 286 19 1 2 1 0 668 119044 Filomicrobium 7 genus 661 0 species 1608628 Candidatus Filomicrobium marinum 1 1234 0 27 genus Pelagibacterium 1082930 2 1 species Pelagibacterium halotolerans 531813 1207 0 1 Rhodoplanes 29407 genus 63 0 2146 1 2 2619116 no rank 0 2083 1 0 2083 674703 Rhodoplanes sp. Z2-YC6860 species 1 0 1924 59282 Blastochloris genus 49 2 1 0 1875 1079 Blastochloris viridis species 1 5290 0 43 genus Hyphomicrobium 81 4 1 1 1700 0 no rank 2619925 1700 0 species Hyphomicrobium sp. MC1 717785 1 1 species Hyphomicrobium nitrativorans 1427356 1727 0 1 1820 0 species Hyphomicrobium denitrificans 53399 4 1 6082 0 122 genus Devosia 46913 196773 no rank 0 5960 3 2150 0 species 1643450 Devosia sp. H5989 1 1 species Devosia sp. I507 2083786 1375 0 2435 0 species 1736675 Devosia sp. A16 1 1140 0 18 genus 1068 Rhodomicrobium 2 1 1 1122 0 species 1069 Rhodomicrobium vannielii 0 33152 Methylobacteriaceae 119045 189 family 15 1 2538 0 66 genus Microvirga 186650 2 1 1 2472 0 species Microvirga ossetica 1882682 genus 2282523 11208 0 3 1 408 Methylobacterium extorquens species 0 6050 1737 0 species 29429 Methylobacterium zatmanii 1 1 223967 Methylobacterium populi species 0 3421 1 9 Methylobacterium 407 1137 genus 0 19217 0 2147 Methylobacterium oryzae 334852 species 1 1 species Methylobacterium phyllosphaerae 418223 1914 0 0 2232 114616 Methylobacterium nodulans species 1 species 31998 Methylobacterium radiotolerans 2455 0 1 1 Methylobacterium aquaticum 270351 species 0 2752 6580 0 no rank 2615210 3 1 2282 0 species Methylobacterium sp. C1 1479019 species Methylobacterium sp. AMS5 925818 1745 0 1 1 species 426117 Methylobacterium sp. 4-46 2553 0 1 4 family 47 Chelatococcaceae 2036754 4568 0 3 1 0 4521 Chelatococcus 28209 124 genus 0 2768 2638111 no rank 1 1 species Chelatococcus sp. CO-6 1702325 2768 0 1629 0 species Chelatococcus daeguensis 444444 1 0 7981 Xanthobacteraceae 335928 151 family 7 1 2572 0 40 genus Xanthobacter 279 2 1 1 2532 0 species 280 Xanthobacter autotrophicus 1 2 Azorhizobium 6 70 genus 0 2669 0 2599 7 Azorhizobium caulinodans species 1 genus 81 152053 Starkeya 2589 0 1 2 1 2508 0 species Starkeya novella 921 20 1 0 25192 69277 Phyllobacteriaceae 223 family 0 1389 Nitratireductor 245876 genus 23 2 1 1 species Nitratireductor basaltis 472175 1366 0 2 1 0 2400 31988 Aminobacter genus 55 83263 Aminobacter aminovorans species 0 2345 1 9 1 0 16989 Mesorhizobium 68287 508 genus 1 species Mesorhizobium opportunistum 593909 2176 0 2160 0 species Mesorhizobium loti 381 1 1607 0 species 1670800 Mesorhizobium sp. B7 1 536018 Mesorhizobium australicum species 0 1563 1 1 0 2742 39645 Mesorhizobium ciceri species 0 1897 325217 no rank 1 species Mesorhizobium sp. WSM1497 278153 1897 0 1 2273 0 species Mesorhizobium japonicum 2066070 1 0 2063 Mesorhizobium amorphae 71433 species 1 28100 Phyllobacterium genus 31 0 1319 1 2 Phyllobacterium zundukense 1867719 species 0 1288 1 0 1380 274591 Hoeflea genus 13 2 1 1367 0 no rank 2614931 1 1 1367 0 species Hoeflea sp. IMCC20628 1620421 1492 0 57 genus 449972 Chelativorans 2 1 1 1435 0 no rank 2643807 1 species 266779 Chelativorans sp. BNC1 1435 0 0 4893 119042 no rank 6 1457 0 37 genus Pseudorhodoplanes 1734920 2 1 1 1420 0 species Pseudorhodoplanes sinuspersici 1235591 22 genus Methyloceanibacter 1484898 1519 0 1 2 1 species 1384459 Methyloceanibacter caenitepidi 1497 0 Hartmannibacter 1572860 genus 25 0 1917 1 2 Hartmannibacter diazotrophicus 1482074 species 0 1892 1 18 1 0 7593 772 Bartonellaceae 17 family 228 genus 773 Bartonella 7576 0 1 17 1 85701 Bartonella tribocorum species 0 516 1 38323 Bartonella henselae species 0 453 1 Bartonella grahamii 33045 species 0 386 species 56426 Bartonella clarridgeiae 444 0 1 1466 0 species Bartonella apis 1686310 1 1 species Bartonella ancashensis 1318743 336 0 0 225 33047 Bartonella vinsonii species 1 6 no rank 2645622 2576 0 1 366 0 species Bartonella sp. A1379B 1933910 428 0 species 1933907 Bartonella sp. JB63 1 1 Bartonella sp. WD16.2 1933904 species 0 405 0 560 Bartonella sp. 1-1C 515256 species 1 1 species 1933906 Bartonella sp. JB15 428 0 1 389 0 species Bartonella sp. Raccoon60 1933912 1 species 388640 Bartonella australis 270 0 1 304 0 species 803 Bartonella quintana 774 Bartonella bacilliformis species 0 372 1 6 1 4272 0 family 28 31993 Methylocystaceae 2360 0 genus 60 133 Methylocystis 3 1 2625913 no rank 0 1057 1 1 species 187303 Methylocystis sp. SC2 1057 0 Methylocystis bryophila 655015 species 0 1243 1 1884 0 genus 68 Methylosinus 425 2 1 1 1816 0 species 426 Methylosinus trichosporium 1 55 Rhizobiaceae 82115 989 family 0 92702 2 1 0 3002 323620 Shinella genus 19 2983 0 no rank 2643062 1 2983 0 species Shinella sp. HZN7 879274 1 34019 Liberibacter 44 genus 0 2552 1 6 1 0 592 Liberibacter crescens 1273132 species 1 0 426 Candidatus Liberibacter asiaticus 34021 species species 309868 Candidatus Liberibacter americanus 518 0 1 0 246 34020 Candidatus Liberibacter africanus species 1 1 556287 Candidatus Liberibacter solanacearum species 0 726 0 65657 227290 no rank 36 genus 50 1525371 Neorhizobium 3459 0 1 2 1 species 399 Neorhizobium galegae 3409 0 1 27 genus 3149 379 Rhizobium 45804 0 1 species Rhizobium leguminosarum 384 9498 0 species 398 Rhizobium tropici 1608 0 1 Rhizobium phaseoli 396 species 0 3206 1 2663 0 species Rhizobium gallicum 56730 1 5528 0 species Rhizobium etli 29449 1 21 0 20152 2613769 no rank 2020311 Rhizobium sp. Kim5 species 0 1345 1 1 Rhizobium sp. N113 1703960 species 0 11 1 0 species Rhizobium sp. N871 1703968 1 1 species 1703964 Rhizobium sp. N621 3 0 1 0 253 Rhizobium sp. N1314 1703961 species 1 0 1229 Rhizobium sp. NT-26 1125847 species 1 0 2111 2028343 Rhizobium sp. 10195 species Rhizobium sp. S41 1869170 species 0 1949 1 1 1914541 Rhizobium sp. Y9 species 0 2032 1 species Rhizobium sp. N741 1703967 1 0 species Rhizobium sp. N1341 1703962 12 0 1 3 0 species 1703965 Rhizobium sp. N6212 1 0 1466 Rhizobium sp. N324 1703969 species 1 1 253 0 species 1703966 Rhizobium sp. N731 1 2048897 Rhizobium sp. NXC24 species 0 1477 1956 0 species Rhizobium sp. ACO-34A 1571470 1 1 species 2020313 Rhizobium sp. TAL182 287 0 Rhizobium sp. IE4771 1301032 species 0 1232 1 species 2020312 Rhizobium sp. CIAT894 1256 0 1 1342 0 species 1981173 Rhizobium sp. NXC14 1 1 Rhizobium sp. IRBG74 424182 species 0 1933 16394 0 301 genus 357 Agrobacterium 7 1 2 species group 1183400 9107 0 1849 0 species Agrobacterium fabrum 1176649 1 358 Agrobacterium tumefaciens species 0 7258 1 0 2237 359 Agrobacterium rhizogenes species 1 2 0 3234 2632611 no rank 1 species Agrobacterium sp. RAC06 1842536 1455 0 1 0 1779 861208 Agrobacterium sp. H13-3 species 1 1515 0 species Agrobacterium vitis 373 10 227292 no rank 0 20502 7 1 0 16171 28105 Sinorhizobium genus 441 3565 0 species 382 Sinorhizobium meliloti 1 1 2298 0 species 194963 Sinorhizobium americanum 1 1654 0 species Sinorhizobium medicae 110321 663276 species group 0 4417 1 1 4417 0 species Sinorhizobium fredii 380 2 no rank 2613772 3796 0 1 Sinorhizobium sp. RAC02 1842534 species 0 2339 1 species Sinorhizobium sp. CCBAU 05631 794846 1457 0 1 3 genus 25 Ensifer 106591 4331 0 1 716925 Ensifer sojae species 0 1843 2463 0 species Ensifer adhaerens 106592 1 17469 0 64 order Rickettsiales 766 54 1 1 781 0 no rank 1699067 1528098 Rickettsiales bacterium Ac37b species 0 781 1 775 Rickettsiaceae 30 family 0 10006 1 27 tribe 33988 9378 0 25 0 8159 Rickettsia 780 genus 1142 23 1 2 1129742 species group 0 1185 0 740 33990 Rickettsia bellii species 1 445 0 species Rickettsia canadensis 788 1 1083 0 species group 114292 2 1 0 698 Rickettsia typhi 785 species Rickettsia prowazekii 782 species 0 385 1 1 551 0 no rank 114295 1 species 337479 Rickettsia endosymbiont of Bemisia tabaci 551 0 17 0 4198 114277 species group Rickettsia peacockii 47589 species 0 192 1 0 36 35794 Rickettsia slovaca species 1 species 35792 Rickettsia parkeri 11 0 1 1 Rickettsia felis 42862 species 0 901 1 154 0 species Rickettsia montanensis 33991 0 92 Rickettsia heilongjiangensis 226665 species 1 1 97 0 species 781 Rickettsia conorii 1 121 0 species 35790 Rickettsia japonica 1 65 0 species 35788 Rickettsia africae 1 0 252 Rickettsia rhipicephali 33992 species 0 147 1105106 Rickettsia philipii species 1 1 630 0 species 787 Rickettsia australis species Rickettsia amblyommatis 33989 319 0 1 0 171 Rickettsia massiliae 35791 species 1 1 Rickettsia akari 786 species 0 551 Rickettsia rickettsii 783 species 0 127 1 1 Rickettsia monacensis 109232 species 0 332 1 2 Orientia 69474 genus 3 0 1219 1216 0 species Orientia tsutsugamushi 784 1 1 0 598 2115980 genus 1 2115978 Candidatus Phycorickettsia trachydisci species 0 598 23 1 6244 0 family 6 Anaplasmataceae 942 tribe 952 2181 0 8 2181 0 19 genus 953 Wolbachia 8 1 no rank 2640676 2162 0 7 0 218 Wolbachia endosymbiont of Drosophila melanogaster 163164 species 1 1 204 0 species Wolbachia sp. wRi 66084 1 0 295 80849 Wolbachia endosymbiont of Brugia malayi species species Wolbachia endosymbiont of Onchocerca ochengi 100901 198 0 1 1 187 0 species Wolbachia endosymbiont of Onchocerca volvulus 77551 species Wolbachia endosymbiont of Drosophila simulans 77038 755 0 1 1 0 305 Wolbachia endosymbiont of Cimex lectularius 246273 species 1 6 genus 53 943 Ehrlichia 3153 0 4 106178 species group 0 2703 697 0 species Ehrlichia chaffeensis 945 1 1 0 745 779 Ehrlichia ruminantium species 1 448 0 species 35795 Ehrlichia muris species 944 Ehrlichia canis 813 0 1 no rank 106181 397 0 1 1 0 397 Ehrlichia sp. HF 391036 species 0 445 768 Anaplasma 7 genus 4 1 1 132 0 species 770 Anaplasma marginale species 769 Anaplasma centrale 200 0 1 106179 species group 0 106 1 1 species 948 Anaplasma phagocytophilum 106 0 33993 Neorickettsia genus 6 0 459 1 4 96 0 species 951 Neorickettsia sennetsu 1 220 0 species Neorickettsia helminthoeca 33994 1 1 Neorickettsia risticii 950 species 0 137 374 0 3 family 1328881 Candidatus Midichloriaceae 2 1 1 0 371 411566 genus species 234827 Candidatus Midichloria mitochondrii 371 0 1 1 82 204457 Sphingomonadales order 781 0 99623 59 1 0 78675 41297 Sphingomonadaceae family 1201 1 2 genus 45 Citromicrobium 72173 1702 0 1657 0 no rank 2630544 1 species 1634516 Citromicrobium sp. JL477 1657 0 1 1 0 706 2709685 genus 0 706 Sphingorhabdus flavimaris 266812 species 1 1 10 Sphingopyxis 165697 294 genus 0 12224 2614943 no rank 0 4626 4 1 species 292913 Sphingopyxis sp. 113P3 1272 0 0 539 Sphingopyxis sp. LPB0140 1913578 species 1 species 1866325 Sphingopyxis sp. MG 1465 0 1 1 1350 0 species Sphingopyxis sp. QXT-31 1357916 1 33050 Sphingopyxis macrogoltabida species 0 2423 1 species 1515612 Sphingopyxis fribergensis 1274 0 species Sphingopyxis alaskensis 117207 1197 0 1 species 267128 Sphingopyxis granuli 1413 0 1 1 0 997 Sphingopyxis terrae 33052 species 0 2067 1434046 Sphingorhabdus 61 genus 3 1 2 2006 0 no rank 2614947 0 1137 2077182 Sphingorhabdus sp. YGSMI21 species 1 0 869 Sphingorhabdus sp. M41 1806885 species 1 1 15 genus 497 Sphingomonas 13687 26037 0 6 10272 0 no rank 196159 1 1522 0 species Sphingomonas sp. NIC1 1961362 1 species 745310 Sphingomonas sp. MM-1 2007 0 1111 0 species Sphingomonas sp. KC8 1030157 1 0 1542 1327635 Sphingomonas sp. Cra20 species 1 1 Sphingomonas sp. LM7 1938607 species 0 1485 1 2605 0 species Sphingomonas sp. LK11 1390395 species 1549858 Sphingomonas taxi 1662 0 1 2 1 0 4699 160791 Sphingomonas wittichii 2453 species Sphingomonas sp. DC-6 1283312 strain 0 2246 1 species Sphingomonas panacis 1560345 1559 0 1 0 1735 Sphingomonas hengshuiensis 1609977 species 1 species Sphingomonas koreensis 93064 1819 0 1 2309 0 species 397260 Sphingomonas sanxanigenens 1 Sphingomonas melonis 152682 species 0 1485 1 7427 0 genus 116 Novosphingobium 165696 5 1 species Novosphingobium resinovorum 158500 1935 0 1 0 1921 2644732 no rank 1 1 702113 Novosphingobium sp. PP1Y species 0 1921 1 species 48935 Novosphingobium aromaticivorans 1558 0 1 1897 0 species 205844 Novosphingobium pentaromativorans 165695 Sphingobium genus 536 0 21293 1 15 0 1046 76947 Sphingobium herbicidovorans species 1 1 0 1299 Sphingobium baderi 1332080 species 1 0 1721 Sphingobium hydrophobicum 1673076 species 1 332056 Sphingobium japonicum species 0 1298 332055 Sphingobium indicum species 0 1513 1 species Sphingobium chlorophenolicum 46429 1852 0 1 1 species 120107 Sphingobium cloacae 1587 0 1 1777 0 species 13690 Sphingobium yanoikuyae 6 2611147 no rank 0 8664 1 Sphingobium sp. EP60837 1855519 species 0 896 1 1617 0 species 627192 Sphingobium sp. SYK-6 1493 0 species Sphingobium sp. TKS 1315974 1 0 1259 Sphingobium sp. MI1205 407020 species 1 1 species 1843368 Sphingobium sp. RAC03 1679 0 1 1720 0 species Sphingobium sp. YBL2 484429 Blastomonas 150203 28 genus 0 1412 1 2 1 1384 0 no rank 2626550 0 1384 Blastomonas sp. RAC04 1842535 species 1 1706 0 genus 32 Rhizorhabdus 1649486 2 1 1 0 1674 1850238 Rhizorhabdus dicambivorans species 2685927 genus 0 1213 1 1 1213 0 species Sphingomonas sp. JJ-A5 1921510 2 1 1687 0 2 genus 541 Zymomonas 1 species Zymomonas mobilis 542 1685 0 20167 0 family 504 Erythrobacteraceae 335929 22 1 2 2054 0 genus 2800681 1 744 0 species 1648404 Erythrobacter atlanticus 1310 0 species Erythrobacter gangjinensis 502682 1 genus 2800682 1234 0 1 1 1234 0 species Altererythrobacter namhicola 645517 1 4 361177 Altererythrobacter genus 147 0 2971 1 species 361183 Altererythrobacter epoxidivorans 1000 0 1 species Altererythrobacter atlanticus 1267766 1294 0 0 530 476157 Altererythrobacter ishigakiensis species 1 no rank 2800788 5685 0 6 1 3 1041 Erythrobacter genus 123 0 3420 1 2055 0 species Erythrobacter litoralis 39960 Porphyrobacter neustonensis 1112 species 0 1242 1 3 1 2265 0 genus 78 Porphyrobacter 1111 0 2187 2683265 no rank 2 1 988 0 species 1896196 Porphyrobacter sp. LM 6 1199 0 species Porphyrobacter HT-58-2 2023229 1 3 1 2673 0 genus 109 1295327 Croceicoccus 1348774 Croceicoccus naphthovorans species 0 1068 1 species Croceicoccus marinus 450378 1496 0 1 2 1907 0 genus 1855416 1 885 0 species Erythrobacter seohaensis 266951 192812 Erythrobacter flavus species 0 1022 1 0 1066 2800685 genus 1 species Altererythrobacter marensis 543877 1066 0 1 genus 2800686 2073 0 2 1 species 1982042 Altererythrobacter mangrovi 972 0 species Altererythrobacter dongtanensis 692370 1101 0 1 5 2706 0 order 2800060 1 5 45 family 69657 Hyphomonadaceae 2706 0 1 3 genus 34 Hyphomonas 85 2147 0 1 1294 0 species 81032 Hyphomonas neptunium 1 no rank 2630699 819 0 1 Hyphomonas sp. Mor2 1906738 species 0 819 0 514 2723 genus 1 species 2724 Hirschia baltica 514 0 1 8 6611 0 no rank 82117 2 1 2448 0 70 genus Phreatobacter 1632780 1 2378 0 species Phreatobacter sp. S-12 1868589 213485 Micavibrio genus 16 0 1402 1 2 1 species Micavibrio aeruginosavorus 349221 1386 0 1778 0 20 genus Polymorphum 991903 2 1 1 0 1758 Polymorphum gilvum 991904 species clade 62654 983 0 2 2 1 0 983 767891 Candidatus Puniceispirillum 17 genus species 767892 Candidatus Puniceispirillum marinum 966 0 1 1 66 order 1080 204441 Rhodospirillales 89870 0 0 53539 Rhodospirillaceae 41295 971 family 30 1 4077 0 genus 21 Nitrospirillum 1543705 2 1 1 28077 Nitrospirillum amazonense species 0 4056 1 0 575 1263978 genus 1 species 1263979 Candidatus Endolissoclinum faulkneri 575 0 1804663 Haematospirillum 2 genus 0 468 1 2 1 0 466 Haematospirillum jordaniae 1549855 species 1 2 genus 83 171436 Tistrella 3050 0 2967 0 species 171437 Tistrella mobilis 1 2258 0 genus 59 Niveispirillum 1543704 2 1 2199 0 species 1612173 Niveispirillum cyanobacteriorum 1 1 3 Thalassospira 168934 39 genus 0 2566 2048283 Thalassospira sp. CSC3H3 species 0 1328 1 1 0 1199 Thalassospira xiamenensis 220697 species 5 1 11722 0 genus 337 13134 Magnetospirillum 3032 0 species 55518 Magnetospirillum gryphiswaldense 1 2 5524 0 no rank 2617991 species 1639348 Magnetospirillum sp. ME-1 2750 0 1 species 1663591 Magnetospirillum sp. XM-1 2774 0 1 species Magnetospirillum magneticum 84159 2829 0 1 1 5 191 Azospirillum 397 genus 0 20226 1 species Azospirillum lipoferum 193 6982 0 1 0 6437 192 Azospirillum brasilense species 1 species 1226968 Azospirillum humicireducens 2009 0 0 4401 528244 Azospirillum thiophilum species 1 2 1 1258 0 6 genus Magnetospira 1182780 1 1252 0 no rank 2685734 1252 0 species 1288970 Magnetospira sp. QH-2 1 1 2 Pararhodospirillum 1612157 17 genus 0 1569 1552 0 species Pararhodospirillum photometricum 1084 1 Rhodospirillum 1081 159 genus 0 4799 1 3 1 Rhodospirillum rubrum 1085 species 0 1654 Rhodospirillum centenum 34018 species 0 2986 1 35 1 0 35251 Acetobacteraceae 433 567 family genus 4 91914 Asaia 826 0 1 2 0 822 Asaia bogorensis 91915 species 1 89583 Gluconacetobacter genus 23 0 1910 1 2 Gluconacetobacter diazotrophicus 33996 species 0 1887 1 1 8 434 Acetobacter 83 genus 0 8005 1 151157 subgenus 0 1048 1 species Acetobacter aceti 435 1048 0 0 1005 1076596 Acetobacter persici species 1 species Acetobacter pomorum 65959 582 0 1 species Acetobacter pasteurianus 438 2554 0 1 Acetobacter oryzifermentans 1633874 species 0 554 1 1 446692 Acetobacter senegalensis species 0 1083 0 1096 Acetobacter tropicalis 104102 species 1 3 1 6043 0 genus 177 Roseomonas 125216 2617492 no rank 0 2910 1 0 2910 2018065 Roseomonas sp. FDAARGOS_362 species 1 species Roseomonas gilardii 257708 2956 0 1 1 2 genus 4 320496 Neoasaia 988 0 1 species 320497 Neoasaia chiangmaiensis 984 0 2 1 0 1043 153497 Kozakia 8 genus 1 0 1035 153496 Kozakia baliensis species genus 3 1602345 Parasaccharibacter 671 0 1 2 Parasaccharibacter apium 1510841 species 0 668 1 1 3 genus 116 Acidiphilium 522 3063 0 524 Acidiphilium cryptum species 0 1465 1 1 0 1482 62140 Acidiphilium multivorum species 1 3 441 Gluconobacter 51 genus 0 3617 1 species Gluconobacter albidus 318683 1154 0 1 Gluconobacter oxydans 442 species 0 2412 2451 0 32 genus 364409 Granulibacter 2 1 1 364410 Granulibacter bethesdensis species 0 2419 0 6067 1434011 Komagataeibacter genus 134 5 1 species Komagataeibacter europaeus 33995 935 0 1 species Komagataeibacter xylinus 28448 2684 0 1 0 802 Komagataeibacter medellinensis 1177712 species 1 1 0 1512 265960 Komagataeibacter nataicola species 1 20 258 order 204458 Caulobacterales 29336 0 76892 Caulobacteraceae 451 family 0 29078 1 19 76890 Asticcacaulis 11 genus 0 1570 1 2 1 Asticcacaulis excentricus 78587 species 0 1559 2 1 0 2510 20 Phenylobacterium genus 16 2494 0 species 284016 Phenylobacterium zucineum 1 Brevundimonas 41275 284 genus 0 9518 1 7 1 0 1443 41276 Brevundimonas vesicularis species 2622653 no rank 0 4669 3 1 0 1615 Brevundimonas sp. GW460-12-10-14-LB2 1827469 species Brevundimonas sp. LM2 1938605 species 0 1661 1 1 species 1532555 Brevundimonas sp. DS20 1393 0 1 Brevundimonas naejangsanensis 588932 species 0 1511 0 1611 74313 Brevundimonas subvibrioides species 1 1 6 212 genus 75 Caulobacter 13926 0 1797 0 species Caulobacter henricii 69395 1 1 2132 0 species Caulobacter segnis 88688 no rank 2648921 3032 0 1 1 species Caulobacter sp. K31 366602 3032 0 1 155892 Caulobacter vibrioides species 0 4487 69666 Caulobacter mirabilis species 0 2266 1 1 1103 0 no rank 81440 1 1103 0 species 1759059 Caulobacteraceae bacterium OTSz_A_272 23 order Holosporales 1921002 1471 0 1 6 0 550 44746 family 1 1 204454 no rank 0 550 550 0 species endosymbiont of Acanthamoeba sp. UWC8 86106 1 2 1777752 family 0 399 1 2 genus 2 1521255 Candidatus Paracaedibacter 399 0 1 397 0 species Candidatus Paracaedibacter acanthamoebae 91604 Caedimonadaceae 2100208 1 family 0 499 1 2 498 0 genus 1509243 1 1 1509244 Candidatus Nucleicultrix amoebiphila species 0 498 1 4 order 1 Parvularculales 255473 505 0 1 3 9 family Parvularculaceae 255474 504 0 495 0 5 genus Parvularcula 208215 2 1 species 208216 Parvularcula bermudensis 490 0 1 1 92 204455 Rhodobacterales 766 order 0 106402 1 91 Rhodobacteraceae 31989 2042 family 0 105636 263377 genus 0 4997 2 species Thiobacimonas profunda 1229727 2629 0 1 2640570 no rank 0 2368 1 1 Yangia sp. CCB-MM3 1792508 species 0 2368 genus 245186 Loktanella 5 0 1 18 genus 97050 Ruegeria 3093 0 1 3 no rank 2625375 1067 0 1 1 0 1067 292414 Ruegeria sp. TM1040 species 1 2008 0 species 89184 Ruegeria pomeroyi genus 13 92944 Ketogulonicigenium 2670 0 1 3 1 1192 0 species 92947 Ketogulonicigenium robustum species Ketogulonicigenium vulgare 92945 1465 0 1 4 1 0 2030 Octadecabacter 53945 5 genus 1 Octadecabacter arcticus 53946 species 0 750 Octadecabacter temperatus 1458307 species 0 649 1 species Octadecabacter antarcticus 1217908 626 0 1 4 1 5792 0 126 genus 34008 Rhodovulum 2 2976 0 no rank 2631432 1 0 1508 Rhodovulum sp. P5 1564506 species 1 Rhodovulum sp. MB263 308754 species 0 1468 Rhodovulum sulfidophilum 35806 species 0 2690 1 genus 2 Tateyamaria 299261 1245 0 1 2 1 species 299262 Tateyamaria omphalii 1243 0 0 2773 Pannonibacter 227873 genus 48 2 1 1 2725 0 species 121719 Pannonibacter phragmitetus 1 2 genus 23 58842 Sagittula 2487 0 2624628 no rank 0 2464 1 2464 0 species 2009329 Sagittula sp. P11 1 74032 Antarctobacter 3 genus 0 1312 1 2 1309 0 species 74033 Antarctobacter heliothermus 1 9581 0 genus 86 Phaeobacter 302485 5 1 3381 0 species Phaeobacter inhibens 221822 1 1 0 2787 Phaeobacter gallaeciensis 60890 species species 1580596 Phaeobacter piscinae 2467 0 1 1844006 Phaeobacter porticola species 0 860 1 2 1 1718 0 genus 7 191028 Leisingera Leisingera methylohalidivorans 133924 species 0 1711 1 1711 0 3 genus Dinoroseobacter 309512 2 1 Dinoroseobacter shibae 215813 species 0 1708 1 2315 0 genus 74 367771 Marinovum 2 1 1 0 2241 Marinovum algicola 42444 species 1 5 167 genus Rhodobacter 1060 10384 0 2 0 3231 196779 no rank 2033869 Rhodobacter sp. CZR27 species 0 1844 1 species 1850250 Rhodobacter sp. LPB0142 1387 0 1 1 Rhodobacter capsulatus 1061 species 0 1931 species 1063 Rhodobacter sphaeroides 5055 0 1 genus 8 Roseobacter 2433 2283 0 1 3 1 1013 0 species Roseobacter denitrificans 2434 1 0 1262 Roseobacter litoralis 42443 species 1 Thalassococcus 436357 genus 0 39 genus 1284657 425 0 1 Planktomarina temperata 1284658 species 0 425 1 589 0 genus 1 1579315 Halocynthiibacter 2 1 0 588 1579316 Halocynthiibacter arcticus species 1 2 1 1761 0 5 genus Confluentimicrobium 1609958 0 1756 2643318 no rank 1 1756 0 species Confluentimicrobium sp. EMB200-NS6 1609966 1 2474 0 no rank 58840 2 1 0 1621 2033435 Rhodobacteraceae bacterium QY30 species Rhodobacteraceae bacterium 1904441 species 0 853 1 0 3429 60136 Sulfitobacter genus 19 3 1 0 1547 196795 no rank 1 species 1917485 Sulfitobacter sp. AM1-D1 1547 0 1 species Sulfitobacter pseudonitzschiae 1402135 1863 0 1 2 1 0 1607 Thioclava 285107 genus 4 1 species Thioclava nitratireducens 1915078 1603 0 1 119541 genus 0 841 species 441209 Rhodobaca barguzinensis 841 0 1 genus 1649279 1331 0 1 1 0 1331 Ruegeria mobilis 379347 species 2 1 837 0 genus 1 1759396 Marivivens 1 836 0 no rank 2622455 836 0 species 1920883 Marivivens sp. JLT3646 1 1 0 1334 2211641 genus species 245188 Loktanella vestfoldensis 1334 0 1 genus 8 Defluviimonas 1097466 2108 0 1 2 1 2100 0 species 1335048 Defluviimonas alba 9 1 15977 0 genus 297 265 Paracoccus no rank 246570 1363 0 1 1 Paracoccus sp. BM15 1529068 species 0 1363 species 34004 Paracoccus aminovorans 2123 0 1 1077935 Paracoccus zhejiangensis species 0 1952 1 1 species Paracoccus contaminans 1945662 1575 0 34003 Paracoccus aminophilus species 0 1586 1 species 266 Paracoccus denitrificans 2670 0 1 1 2728 0 species 147645 Paracoccus yeei 0 1683 2065379 Paracoccus sp. CBA4604 species 1 0 1094 74030 Roseovarius genus 16 2 1 215743 Roseovarius mucosus species 0 1078 1 Pelagibaca 360528 genus 12 0 2266 1 2 2254 0 species 1250539 Pelagibaca abyssi 1 1 4 478070 Labrenzia 67 genus 0 5110 1701 0 species 187304 Labrenzia aggregata 1 3342 0 no rank 2648686 2 2036 0 species Labrenzia sp. CP4 1674922 1 1 1306 0 species 2021862 Labrenzia sp. VG12 1 2 genus 23 Jannaschia 188905 1092 0 1 0 1069 2645469 no rank 0 1069 Jannaschia sp. CCS1 290400 species 1 1 genus Roseibacterium 159345 1301 0 1 2 1 Roseibacterium elongatum 159346 species 0 1300 5583 0 29 genus 875170 Celeribacter 5 1 species Celeribacter marinus 1397108 506 0 1 1 Celeribacter ethanolicus 1758178 species 0 1191 1 species Celeribacter manganoxidans 1411902 1715 0 1 Celeribacter indicus 1208324 species 0 2142 0 460817 68525 subphylum 202 1 72 29547 Epsilonproteobacteria 239 class 0 83309 81514 0 2386 order 213849 Campylobacterales 66 1 5 2771472 family 0 3395 2 1 1259 0 6 genus 269260 Nitratifractor species Nitratifractor salsuginis 269261 1253 0 1 0 2136 265570 Sulfurovum genus 12 3 1 1 0 1085 206403 Sulfurovum lithotrophicum species no rank 2646778 1039 0 1 1 1039 0 species 387093 Sulfurovum sp. NBC37-1 5533 family Campylobacteraceae 72294 65207 0 1 41 5942 0 genus 47 57665 Sulfurospirillum 9 1 1 0 743 66821 Sulfurospirillum multivorans species 1 Sulfurospirillum barnesii 44674 species 0 981 1 species Sulfurospirillum cavolei 366522 550 0 3 no rank 2618290 2520 0 1 912 0 species 1986224 Sulfurospirillum sp. SL2-1 1 0 867 Sulfurospirillum sp. UCH001 1581011 species 1 741 0 species Sulfurospirillum sp. JPD-1 220622 1 515 0 species 65553 Sulfurospirillum deleyianum 0 586 194424 Sulfurospirillum halorespirans species 1 no rank 2321108 8569 0 5 1 0 2087 2321207 no rank 1 2087 0 species Arcobacter sp. L 944547 3 1 4348 0 13 genus 28196 Arcobacter species Arcobacter nitrofigilis 28199 1673 0 1 2662 0 species Arcobacter butzleri 28197 1 2134 0 genus 2321187 1 species Arcobacter sp. LPB0137 1850254 2134 0 1 194 Campylobacter genus 695 0 45163 1 26 522485 Campylobacter avium species 0 666 1 1 0 651 Campylobacter curvus 200 species 0 3311 2593542 no rank 4 1 0 713 Campylobacter sp. RM12175 1660076 species 0 740 Campylobacter sp. RM8964 1660074 species 1 1 0 1262 1500960 Campylobacter sp. RM16704 species 1 1660073 Campylobacter sp. RM6137 species 0 596 1211 0 species Campylobacter concisus 199 1 species Campylobacter pinnipediorum 1965231 1614 0 1 1 15112 0 species 195 Campylobacter coli 1 783 0 species 260714 Campylobacter insulaenigrae 827 Campylobacter ureolyticus species 0 1512 1 1 0 333 Campylobacter helveticus 28898 species 1 0 626 Campylobacter iguaniorum 1244531 species 1 species 206 Campylobacter sputorum 1607 0 species 824 Campylobacter gracilis 834 0 1 0 2892 201 Campylobacter lari species 1 1 Campylobacter volucris 1031542 species 0 1018 1 0 1404 Campylobacter fetus 196 species 488546 Campylobacter peloridis species 0 1103 1 1 species Campylobacter subantarcticus 497724 1109 0 1 Campylobacter hominis 76517 species 0 684 613 0 species 374106 Campylobacter cuniculorum 1 1 0 5622 197 Campylobacter jejuni species 1 Campylobacter hyointestinalis 198 species 0 848 0 915 Campylobacter lanienae 75658 species 1 1 15 family 36 Helicobacteraceae 72293 8222 0 2 1 607 0 1 genus Wolinella 843 1 Wolinella succinogenes 844 species 0 606 1 12 76 genus Helicobacter 209 7579 0 1 0 3065 210 Helicobacter pylori species 1 214 Helicobacter felis species 0 328 1 2593540 no rank 0 342 1 222136 Helicobacter sp. MIT 01-6242 species 0 342 1 661 0 species Helicobacter hepaticus 32025 1 species Helicobacter bilis 37372 720 0 1 species Helicobacter himalayensis 1591088 310 0 1 213 Helicobacter cinaedi species 0 459 1 species Helicobacter mustelae 217 355 0 species 76936 Helicobacter typhlonius 406 0 1 0 206 212 Helicobacter acinonychis species 1 0 651 138563 Helicobacter cetorum species 1 4 0 2304 2771471 family 1 3 genus 11 Sulfurimonas 202746 1566 0 39766 Sulfurimonas denitrificans species 0 621 1 1 0 934 202747 Sulfurimonas autotrophica species 0 738 286130 genus 1 1 0 738 148813 Sulfuricurvum kujiense species order 235899 1556 0 5 3 1 0 1069 Nautiliaceae 224467 3 family 1 2 191291 Nautilia genus 12 0 1066 1 1054 0 species Nautilia profundicola 244787 0 487 2795691 family 2 1 2 genus 4 269258 Nitratiruptor 487 0 2624044 no rank 0 483 1 483 0 species 387092 Nitratiruptor sp. SB155-2 1 0 377508 Deltaproteobacteria 28221 class 522 130 1 1 26 645 order 213115 Desulfovibrionales 224253 0 3 1 0 1088 Desulfohalobiaceae 213117 8 family 8 genus Desulfohalobium 45662 1080 0 1 2 0 1072 Desulfohalobium retbaense 45663 species 1 213116 Desulfomicrobiaceae 102 family 0 6372 1 4 55 genus Desulfomicrobium 898 6270 0 1 3 Desulfomicrobium orale 132132 species 0 3246 1 Desulfomicrobium baculatum 899 species 0 2969 1 18 1 0 216148 Desulfovibrionaceae 194924 family 483 2949 0 genus 2582840 1 0 2949 873 Desulfovibrio africanus species 1 0 2026 2794998 genus 1 2026 0 species Desulfovibrio salexigens 880 1 9784 0 135 genus 2035811 Pseudodesulfovibrio 4 1 1906 0 species Pseudodesulfovibrio profundus 57320 1 3329 0 species Pseudodesulfovibrio aespoeensis 182210 1 Pseudodesulfovibrio indicus 1716143 species 0 4414 1 genus 6 Lawsonia 41707 969 0 1 2 1 963 0 species Lawsonia intracellularis 29546 1 9 genus 417 872 Desulfovibrio 199937 0 1 901 Desulfovibrio piger species 0 165067 1 species 881 Desulfovibrio vulgaris 10049 0 1 species 44742 Desulfovibrio fairfieldensis 5882 0 1 0 1207 1725232 Candidatus Desulfovibrio trichonymphae species 0 7776 876 Desulfovibrio desulfuricans species 1 1 species Desulfovibrio magneticus 184917 4294 0 1 species 58180 Desulfovibrio alaskensis 2698 0 0 2547 2593640 no rank 1 0 2547 631220 Desulfovibrio sp. G11 species 1 4173 0 27 order Desulfarculales 453227 4 1 3 1 0 4146 Desulfarculaceae 453228 family 83 2 1 4063 0 40 genus Desulfarculus 453229 1 0 4023 453230 Desulfarculus baarsii species 4433 0 18 order 213462 Syntrophobacterales 11 1 0 1577 Syntrophobacteraceae 213465 family 67 3 1 2 1 1510 0 11 genus 29526 Syntrophobacter species 119484 Syntrophobacter fumaroxidans 1499 0 1 1 7 12 family 213468 Syntrophaceae 2838 0 893 0 4 genus Desulfobacca 60892 2 1 1 60893 Desulfobacca acetoxidans species 0 889 2 1 0 875 2357 Desulfomonile genus 5 1 0 870 Desulfomonile tiedjei 2358 species Syntrophus 43773 genus 5 0 1058 1 2 1 0 1053 Syntrophus aciditrophicus 316277 species 1 24 69541 Desulfuromonadales 767 order 0 42388 0 27479 213422 Geobacteraceae family 237 14 1 1 2 13 genus 392332 Geoalkalibacter 2165 0 0 2152 Geoalkalibacter subterraneus 483547 species 1 492 genus 28231 Geobacter 25077 0 1 11 1 Geobacter bemidjiensis 225194 species 0 2624 1 1830 0 species Geobacter uraniireducens 351604 1 2427 0 species 28232 Geobacter metallireducens 1 2539 0 species Geobacter lovleyi 313985 0 2154 Geobacter sulfurreducens 35554 species 1 1 1460 0 species 1203471 Geobacter daltonii 1 0 2692 Geobacter anodireducens 1340425 species 1 species 345632 Geobacter pickeringii 2323 0 0 6536 2627627 no rank 2 3559 0 species 443143 Geobacter sp. M18 1 0 2977 443144 Geobacter sp. M21 species 1 190 family 213421 Desulfuromonadaceae 14142 0 1 9 5 1 0 8179 18 Pelobacter genus 79 species Pelobacter carbinolicus 19 1631 0 1 no rank 2620299 1485 0 1 1485 0 species 1842532 Pelobacter sp. SFB93 1 0 3011 Pelobacter propionicus 29543 species 1 1 29542 Pelobacter acetylenicus species 0 1973 890 Desulfuromonas 50 genus 0 5773 1 3 no rank 2614637 3136 0 1 1 species Desulfuromonas sp. DDH964 1823759 3136 0 1 0 2587 Desulfuromonas soudanensis 1603606 species 0 16779 Desulfobacterales 213118 order 137 20 1 1 10 213119 Desulfobacteraceae family 87 0 8311 1165 0 10 genus 28222 Desulfobacula 2 1 Desulfobacula toluolica 28223 species 0 1155 1 896 Desulfococcus 15 genus 0 4106 1 3 species Desulfococcus oleovorans 181663 1918 0 1 1 0 2173 897 Desulfococcus multivorans species 2 1 0 1361 2295 Desulfobacterium genus 3 Desulfobacterium autotrophicum 2296 species 0 1358 1 Desulfatibacillum 218207 genus 7 0 1592 1 2 1585 0 species 259354 Desulfatibacillum alkenivorans 1 0 8331 213121 Desulfobulbaceae family 44 9 1 2 1 2225 0 genus 11 Desulfurivibrio 427922 1 species 427923 Desulfurivibrio alkaliphilus 2214 0 genus 17 893 Desulfobulbus 3493 0 1 2 0 3476 Desulfobulbus sp. ORNL 1986146 species 1 12 genus 53318 Desulfocapsa 1328 0 1 2 species 65555 Desulfocapsa sulfexigens 1316 0 1 1 2 Desulfotalea 109168 genus 1 0 1241 84980 Desulfotalea psychrophila species 0 1240 1 29 Myxococcales order 1150 0 83378 1 38 8 0 16000 80812 suborder 0 12159 Polyangiaceae 49 87 family 5 1 1 2 genus 16 50 Chondromyces 2205 0 1 species 52 Chondromyces crocatus 2189 0 2 1 0 9867 Sorangium 39643 genus 56 1 9811 0 species Sorangium cellulosum 56 3 1 0 3841 1055686 Sandaracinaceae 39 family 3802 0 49 genus Sandaracinus 1055688 2 1 1 3753 0 species 927083 Sandaracinus amylolyticus 0 4073 224462 suborder 3 3 1 4073 0 family 86 Kofleriaceae 224464 3987 0 genus 23 162027 Haliangium 2 1 species Haliangium ochraceum 80816 3964 0 1 62155 0 suborder 80811 26 1 3 26 family Vulgatibacteraceae 1524213 2094 0 2068 0 genus 35 1524214 Vulgatibacter 2 1 1 1391653 Vulgatibacter incomptus species 0 2033 family 192 Anaeromyxobacteraceae 1524215 14187 0 1 5 1 4 161492 Anaeromyxobacter genus 243 0 13995 2620896 no rank 0 6932 2 1 Anaeromyxobacter sp. Fw109-5 404589 species 0 3142 species 447217 Anaeromyxobacter sp. K 3790 0 1 1 0 6820 Anaeromyxobacter dehalogenans 161493 species 1 9 39 Archangiaceae 355 family 0 16231 1 2 47 Archangium 61 genus 0 4782 0 4721 48 Archangium gephyra species 1 2 1 3476 0 genus 22 40 Stigmatella 41 Stigmatella aurantiaca species 0 3454 1 1 2 genus 57 Cystobacter 42 4024 0 0 3967 Cystobacter fuscus 43 species 1 44 Melittangium genus 44 0 3594 1 2 83453 Melittangium boletus species 0 3550 1 1 9 201 family 31 Myxococcaceae 29643 0 5 1 0 19640 32 Myxococcus 648 genus Myxococcus hansupus 1297742 species 0 3636 1 1 3575 0 species Myxococcus xanthus 34 3639 0 species Myxococcus stipitatus 83455 1 0 8142 Myxococcus fulvus 33 species 1 159 genus Corallococcus 83461 9802 0 1 3 0 5291 184914 Corallococcus coralloides species 1 1 4352 0 species 35 Myxococcus macrosporus 1582 0 order 15 Desulfurellales 213113 6 1 1 5 8 family Desulfurellaceae 117942 1567 0 899 0 genus 38 33001 Desulfurella 2 1 1 861 0 species 33002 Desulfurella acetivorans 660 0 genus 5 Hippea 84404 2 1 Hippea maritima 84405 species 0 655 1 1553900 class 0 5572 10 1 5 28 order Bdellovibrionales 213481 3484 0 1 4 Bdellovibrionaceae 213483 family 7 0 3456 0 3449 958 Bdellovibrio 9 genus 3 1 1 515 0 species 453816 Bdellovibrio exovorus 1 2925 0 species Bdellovibrio bacteriovorus 959 5 order 2024979 Bacteriovoracales 2088 0 1 5 2 0 882 263369 family 1 2 146784 Bacteriovorax genus 1 0 882 1 881 0 species 960 Bacteriovorax stolpii 2 family 1652132 1201 0 2 1 0 1201 1652133 Halobacteriovorax genus 5 species Halobacteriovorax marinus 97084 1196 0 1 0 1039764 1236 Gammaproteobacteria 2462 class 897 1 6 1 0 4193 Acidiferrobacterales 1692040 119 order 1 5 1692041 Acidiferrobacteraceae family 68 0 4074 genus 72 Sulfurifustis 1692042 2217 0 1 2 2145 0 species Sulfurifustis variabilis 1675686 1 0 1789 Sulfuricaulis 1744881 genus 10 2 1 Sulfuricaulis limicola 1620215 species 0 1779 1 41113 0 659 order Chromatiales 135613 52 1 1 18 1046 Chromatiaceae family 257 0 15292 2 1 432 0 genus 5 Candidatus Nitrosoglobus 1980513 1 1630141 Candidatus Nitrosoglobus terrae species 0 427 0 2252 85072 Allochromatium genus 23 2 1 1 species Allochromatium vinosum 1049 2229 0 1 2047 0 no rank 82569 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 species 0 2047 Thiodictyon 53392 genus 24 0 3147 1 2 1166950 Candidatus Thiodictyon syntrophicum species 0 3123 1 4 1 0 1230 1227 Nitrosococcus genus 10 1 Nitrosococcus halophilus 133539 species 0 413 1 511 0 species 1229 Nitrosococcus oceani 1 0 296 Nitrosococcus watsonii 473531 species 2 1 0 1724 156885 Thioflavicoccus genus 17 1 species Thioflavicoccus mobilis 80679 1707 0 2 1 2023 0 61 genus 13724 Thiocystis 1 0 1962 73141 Thiocystis violascens species 1 2 85076 Marichromatium 34 genus 0 2180 0 2146 Marichromatium purpuratum 37487 species 1 657 0 1 family 1738654 Woeseiaceae 3 1 1 2 1738655 Woeseia genus 7 0 656 1 Woeseia oceani 1548547 species 0 649 18 1 0 17146 72276 Ectothiorhodospiraceae family 231 1 3 Spiribacter 1335745 34 genus 0 1737 1 0 1142 Spiribacter curvatus 1335757 species 1 species Spiribacter salinus 1335746 561 0 1 2 Acidihalobacter 1765964 14 genus 0 873 1 859 0 species 160660 Acidihalobacter prosperus 1 2 1051 Ectothiorhodospira genus 9 0 1446 1 0 1437 2684909 no rank 1 1442136 Ectothiorhodospira sp. BSL-9 species 0 1437 1 2 133193 Alkalilimnicola genus 28 0 2087 Alkalilimnicola ehrlichii 351052 species 0 2059 1 8803 0 genus 116 106633 Thioalkalivibrio 6 1 species 186931 Thioalkalivibrio nitratireducens 1527 0 1 species 106634 Thioalkalivibrio versutus 1825 0 1 1 0 1476 Thioalkalivibrio paradoxus 108010 species 1206 0 no rank 2621013 1 1 Thioalkalivibrio sp. K90mix 396595 species 0 1206 1 Thioalkalivibrio sulfidiphilus 1033854 species 0 2653 2 1 1969 0 20 genus Halorhodospira 85108 1 0 1949 1053 Halorhodospira halophila species Wenzhouxiangellaceae 1676141 14 family 0 1632 1 3 2 1 1618 0 69 genus Wenzhouxiangella 1676142 1 0 1549 1579979 Wenzhouxiangella marina species 1 4 14 family Halothiobacillaceae 255526 1960 0 1 3 genus 54 Halothiobacillus 109262 1946 0 1 0 813 Halothiobacillus neapolitanus 927 species 1079 0 no rank 2636392 1 species 1860122 Halothiobacillus sp. LS2 1079 0 1 no rank 451214 2099 0 2 1 2 genus 30 Thiohalobacter 1273155 2099 0 1 0 2069 Thiohalobacter thiocyanaticus 585455 species 1 3 Granulosicoccaceae 449719 family 1 0 1668 2 1 0 1667 Granulosicoccus 437504 13 genus 1 437505 Granulosicoccus antarcticus species 0 1654 14 no rank 118884 6793 0 genus 1 Candidatus Thioglobus 655184 777 0 1 3 0 478 1427364 Candidatus Thioglobus singularis species 1 1 1705394 Candidatus Thioglobus autotrophicus species 0 298 1106 0 clade 198346 1 species 186490 Candidatus Baumannia cicadellinicola 1106 0 1 2 1 0 1041 Thiolapillus 1608298 genus 19 1022 0 species Thiolapillus brandeum 1076588 1 1905 0 clade 32036 4 1 410330 Calyptogena okutanii thioautotrophic gill symbiont species 0 742 1 2 genus 1 Candidatus Ruthia 1541743 577 0 1 576 0 species 386487 Candidatus Ruthia magnifica 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 586 0 0 747 Pseudohongiella 1524249 genus 1 2 1 1 species Pseudohongiella spirulinae 1249552 746 0 1 2 10 genus Sedimenticola 349742 1217 0 1 Sedimenticola thiotaurini 1543721 species 0 1207 4 1 1223 0 71 order Nevskiales 1775403 2 family 2689614 1146 0 1 2 Steroidobacter 469322 genus 5 0 1146 1 1141 0 species Steroidobacter denitrificans 465721 1 6 0 family 568386 Sinobacteraceae 0 334136 91347 Enterobacterales 1534 order 246 1 1 28 Erwiniaceae 1903409 113 family 0 35397 2 4042 0 genus 2100764 1849 0 species Pantoea gaviniae 665914 1 1 2193 0 species Pantoea calida 665913 1 2 1 genus 51228 Wigglesworthia 798 0 51229 Wigglesworthia glossinidia species 0 797 1 genus 212 Erwinia 551 7776 0 1 8 79967 Erwinia pyrifoliae species 0 978 1 Erwinia billingiae 182337 species 0 1591 1 species Erwinia amylovora 552 1058 0 1 1 2622719 no rank 0 906 1 215689 Erwinia sp. Ejp617 species 0 906 0 1710 1619313 Erwinia gerundensis species 1 species 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 283 0 1 1 0 1038 Erwinia tasmaniensis 338565 species 15957 0 670 genus Pantoea 53335 11 1 3 no rank 2630326 5004 0 1 Pantoea sp. At-9b 592316 species 0 1429 species Pantoea sp. PSNIH1 1484158 1453 0 1 1 0 2122 1484157 Pantoea sp. PSNIH2 species 1 species 470934 Pantoea vagans 2675 0 1 Pantoea ananatis 553 species 0 1313 0 1044 1076550 Pantoea rwandensis species 1 1182 0 species 1891675 Pantoea alhagi 1 1 2515 0 species group 1654067 1 species 549 Pantoea agglomerans 2515 0 1 0 422 1235990 Candidatus Pantoea carbekii species 1 66269 Pantoea stewartii species 0 1132 2 1 1205 0 29 genus 82986 Tatumella 1176 0 species 53336 Tatumella citrea 1 2 1 0 5506 32199 Buchnera genus 2 1 species 9 Buchnera aphidicola 5504 0 1 22 Morganellaceae 1903414 51 family 0 15392 1 4 586 Providencia 9 genus 0 2755 0 634 Providencia alcalifaciens 126385 species 1 1 species Providencia stuartii 588 1281 0 Providencia rettgeri 587 species 0 831 1 583 Proteus genus 10 0 2370 1 3 871 0 species 585 Proteus vulgaris 1 species 584 Proteus mirabilis 1489 0 1 2 1 587 0 15 genus 637 Arsenophonus 572 0 species 634113 Arsenophonus symbiont of Lipoptena fortisetosa 1 genus 74 Photorhabdus 29487 2937 0 1 4 1 0 728 Photorhabdus temperata 574560 species 1 0 1438 Photorhabdus asymbiotica 291112 species 697 0 species 29488 Photorhabdus luminescens 1 6 1 4427 0 genus 48 626 Xenorhabdus 1 species Xenorhabdus hominickii 351679 502 0 species 40576 Xenorhabdus bovienii 1611 0 1 1 species Xenorhabdus poinarii 40577 649 0 777 0 species 628 Xenorhabdus nematophila 1 840 0 species 351671 Xenorhabdus doucetiae 1 2265 0 67 genus Morganella 581 2 1 Morganella morganii 582 species 0 2198 1 family 1903416 835 0 2 2 1 0 835 Pragia 82984 genus 13 1 Pragia fontium 82985 species 0 822 Enterobacteriaceae 543 1745 family 0 179003 1 118 10 1 33301 0 genus 1042 570 Klebsiella 1 3848 0 species 244366 Klebsiella variicola species 2026240 Klebsiella quasivariicola 1848 0 1 0 8585 573 Klebsiella pneumoniae species 1 0 2852 Klebsiella aerogenes 548 species 1 2 2608929 no rank 0 3544 1 species Klebsiella sp. M5al 1934254 1818 0 0 1726 Klebsiella sp. LTGPAF-6F 1905288 species 1 1134687 Klebsiella michiganensis species 0 3386 1 1 0 2134 1463165 Klebsiella quasipneumoniae species 1 Klebsiella oxytoca 571 species 0 6062 5 no rank 36866 6497 0 0 1352 Plautia stali symbiont 891974 species 1 693444 Enterobacteriaceae bacterium strain FGI 57 species 0 1514 1 species 1920109 Enterobacteriaceae bacterium ENNIH2 1221 0 1 species Enterobacteriaceae bacterium ENNIH1 2066051 1070 0 1 1 0 1340 1920128 Enterobacteriaceae bacterium ENNIH3 species 3 1 8941 0 genus 38 Salmonella 590 1166 0 species 54736 Salmonella bongori 1 1 0 7737 Salmonella enterica 28901 species 0 4672 Cedecea 158483 8 genus 2 1 Cedecea neteri 158822 species 0 4664 1 genus 1048757 149 0 1 species 1048758 Candidatus Moranella endobia 149 0 1 Shigella 620 186 genus 0 2366 1 4 622 Shigella dysenteriae species 0 919 1 0 671 2629414 no rank 1 1 species 1813821 Shigella sp. PAMC 28760 671 0 590 0 species Shigella flexneri 623 1 17 0 4612 191675 no rank 17 4612 0 clade 84563 1906657 genus 0 287 1 1 Candidatus Doolittlea endobia 1778262 species 0 287 genus 1906660 310 0 1 310 0 species Candidatus Mikella endobia 1778264 1 242 0 genus 1906659 1 1 0 242 1778263 Candidatus Hoaglandella endobia species 4 146507 clade 0 936 species 1199245 secondary endosymbiont of Ctenarytaina eucalypti 284 0 1 2 1 0 253 568987 Candidatus Hamiltonella 16 genus species Candidatus Hamiltonella defensa 138072 237 0 1 1 species 134287 secondary endosymbiont of Heteropsylla cubana 399 0 1 genus 1906661 301 0 1 species Candidatus Gullanella endobia 1070130 301 0 1 genus 1682492 461 0 1 461 0 species 1410383 Candidatus Tachikawaea gelatinosa 7 1812 0 clade 84564 1812 0 genus 2 203804 Candidatus Blochmannia 7 1 1 0 315 203907 Candidatus Blochmannia floridanus species Candidatus Blochmannia pennsylvanicus 101534 species 0 222 1 611 0 no rank 711328 2 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 species 0 364 1 1 species 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 247 0 0 327 Candidatus Blochmannia chromaiodes 251542 species 1 1 251535 Candidatus Blochmannia vafer species 0 335 1 clade 199891 263 0 1 species 1835721 secondary endosymbiont of Trabutina mannipara 263 0 genus 15 Candidatus Ishikawaella 409304 486 0 1 2 1 species 168169 Candidatus Ishikawaella capsulata 471 0 11271 0 326 genus 413496 Cronobacter 8 1 species 28141 Cronobacter sakazakii 2610 0 1 1 species 1163710 Cronobacter condimenti 1098 0 1 Cronobacter universalis 535744 species 0 1601 1689 0 species 413501 Cronobacter muytjensii 1 1273 0 species 413502 Cronobacter turicensis 1 1 0 1243 413503 Cronobacter malonaticus species species Cronobacter dublinensis 413497 1431 0 1 4 1 0 4871 Lelliottia 1330545 genus 69 1 1041 0 species 1907578 Lelliottia jeotgali 1663 0 species Lelliottia nimipressuralis 69220 1 61646 Lelliottia amnigena species 0 2098 1 3 1 0 5543 Pluralibacter 1330546 38 genus 1 61647 Pluralibacter gergoviae species 0 3575 1 0 1930 [Enterobacter] lignolyticus 1334193 species 0 6183 1330547 Kosakonia genus 50 5 1 species 497725 Kosakonia oryzae 1238 0 1 1 species Kosakonia radicincitans 283686 1559 0 1 1378 0 species 1158459 Kosakonia sacchari 0 1958 Kosakonia cowanii 208223 species 1 0 4178 83654 Leclercia genus 277 4 1 1 83655 Leclercia adecarboxylata species 0 1101 0 2800 2627398 no rank 2 Leclercia sp. LSNIH1 1920114 species 0 1546 1 Leclercia sp. LSNIH3 1920116 species 0 1254 1 23349 0 genus 1069 544 Citrobacter 14 1 0 1119 Citrobacter farmeri 67824 species 1 1 species 67825 Citrobacter rodentium 1341 0 1 0 1438 545 Citrobacter koseri species 0 2181 2644389 no rank 2 982 0 species 1920110 Citrobacter sp. CFNIH10 1 1 1199 0 species Citrobacter sp. FDAARGOS_156 1702170 1 3193 0 species Citrobacter amalonaticus 35703 0 13008 1344959 species group 7 1 species Citrobacter freundii 546 4658 0 1 Citrobacter braakii 57706 species 0 1839 species Citrobacter werkmanii 67827 1829 0 1 1 Citrobacter freundii complex sp. CFNIH4 2077148 species 0 1386 2077147 Citrobacter freundii complex sp. CFNIH3 species 0 1063 1 1 920 0 species Citrobacter freundii complex sp. CFNIH9 2077149 1 0 1313 Citrobacter freundii complex sp. CFNIH2 2066049 species 2 1 448 0 15 genus Candidatus Riesia 401618 433 0 species 401619 Candidatus Riesia pediculicola 1 1 22 547 Enterobacter genus 2237 0 37291 12 0 26351 354276 species group 1 3451 0 species 61645 Enterobacter asburiae 1 species 208224 Enterobacter kobei 750 0 0 937 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 species 1 1 species Enterobacter cancerogenus 69218 1201 0 species 3800 158836 Enterobacter hormaechei 6190 0 1 3 subspecies 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' 1268 0 1 1 1296536 Enterobacter xiangfangensis subspecies 0 1122 3 2141 0 no rank 2757714 species 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 765 0 1 1 713 0 species Enterobacter cloacae complex bacterium 2027919 1 species 1915310 Enterobacter cloacae complex sp. ECNIH7 663 0 1 Enterobacter ludwigii 299767 species 0 860 1 0 10821 Enterobacter cloacae 550 species 9 no rank 2608935 8703 0 1977566 Enterobacter sp. Crenshaw species 0 493 1 1827481 Enterobacter sp. ODB01 species 0 863 1 1154 0 species Enterobacter sp. FY-07 1692238 1 1 2051905 Enterobacter sp. CRENT-193 species 0 1356 1 399742 Enterobacter sp. 638 species 0 945 1416 0 species 1914861 Enterobacter sp. SA187 1 1 621 0 species 1868135 Enterobacter sp. HK169 1 1560339 Enterobacter sp. E20 species 0 530 Enterobacter sp. R4-368 1166130 species 0 1325 1 5 1 0 14546 Escherichia 561 genus 150 1 0 10507 Escherichia coli 562 species 1 Escherichia marmotae 1499973 species 0 951 1 Escherichia fergusonii 564 species 0 744 0 2194 Escherichia albertii 208962 species 1 1 3 46 genus 160674 Raoultella 5582 0 0 3891 Raoultella ornithinolytica 54291 species 1 1645 0 species 575 Raoultella planticola 1 genus 2 1335483 Shimwellia 1843 0 1 2 0 1841 563 Shimwellia blattae species 1 1 genus 579 1129 0 species 61648 Kluyvera intermedia 1129 0 1 451511 no rank 0 1768 2 genus 52 Plesiomonas 702 1768 0 1 2 1 Plesiomonas shigelloides 703 species 0 1716 0 25468 Pectobacteriaceae 1903410 family 102 20 1 124 genus Sodalis 84565 3901 0 1 5 1 1239307 Sodalis praecaptivus species 0 1471 1 1929246 Sodalis endosymbiont of Henestaris halophilus species 0 311 0 913 1486991 Candidatus Sodalis pierantonius species 1 1082 0 species Sodalis glossinidius 63612 1 8748 0 402 genus 122277 Pectobacterium 6 1 3447 0 species Pectobacterium carotovorum 554 1 1 0 880 Pectobacterium wasabiae 55208 species 1 Pectobacterium polaris 2042057 species 0 1568 species 29471 Pectobacterium atrosepticum 1171 0 1 1 0 1280 1905730 Pectobacterium parmentieri species 6 1 0 11259 Dickeya 204037 388 genus 1 Dickeya dadantii 204038 species 0 1788 1688 0 species Dickeya dianthicola 204039 1 0 3323 1089444 Dickeya solani species 1 2081 0 species Dickeya zeae 204042 1 1 species 1778540 Dickeya fangzhongdai 1991 0 71655 Brenneria genus 16 0 1458 1 2 1 Brenneria goodwinii 1109412 species 0 1442 58201 0 234 family Yersiniaceae 1903411 39 1 34037 Rahnella genus 69 0 3573 1 4 2635087 no rank 0 2286 2 1160 0 species Rouxiella sp. ERMR1:05 1805933 1 741091 Rahnella sp. Y9602 species 0 1126 1 Rahnella aquatilis 34038 species 0 1218 1 1 13 253 genus Yersinia 629 12703 0 1 species Yersinia kristensenii 28152 678 0 1 0 825 Yersinia aleksiciae 263819 species 641 0 species 29483 Yersinia aldovae 1 1 2653513 no rank 0 661 1 species 1839800 Yersinia sp. FDAARGOS_228 661 0 630 Yersinia enterocolitica species 0 2621 1 1 29486 Yersinia ruckeri species 0 742 species group 1649845 2807 0 3 761 0 species 367190 Yersinia similis 1 1 0 808 632 Yersinia pestis species 0 1238 633 Yersinia pseudotuberculosis species 1 1 species Yersinia rohdei 29485 628 0 1 Yersinia frederiksenii 29484 species 0 2158 1 0 689 Yersinia intermedia 631 species 1 2 11 genus 1745211 Chania 982 0 1 species 1639108 Chania multitudinisentens 971 0 1 Rouxiella 1565532 genus 0 23 1 2 genus 8 929812 Gibbsiella 1726 0 1718 0 species 929813 Gibbsiella quercinecans 1 16 1 0 38960 Serratia 613 genus 1890 Serratia liquefaciens 614 species 0 1732 1 9425 0 species Serratia marcescens 615 1 1 0 2338 61651 Serratia ficaria species 1 Serratia fonticola 47917 species 0 3070 1 0 3752 Serratia plymuthica 82996 species species Serratia proteamaculans 28151 1183 0 1 0 2384 61652 Serratia rubidaea species 1 8 no rank 2647522 13186 0 1 Serratia sp. FS14 1327989 species 0 2204 species 768493 Serratia sp. AS13 1110 0 1 1 1149 0 species 104623 Serratia sp. ATCC 39006 2033438 Serratia sp. MYb239 species 0 1938 1 0 1879 488142 Serratia sp. SCBI species 1 1758196 Serratia sp. SSNIH1 species 0 1826 1 1 1110 0 species 768490 Serratia sp. AS12 1970 0 species 671990 Serratia sp. FGI94 1 0 16538 1903412 Hafniaceae family 23 14 1 3 1 3010 0 47 genus Hafnia 568 1 0 2193 569 Hafnia alvei species 1 770 0 no rank 2621980 0 770 Hafnia sp. CBA7124 1848580 species 1 1 8 635 Edwardsiella genus 752 0 12640 1104 0 species Edwardsiella hoshinae 93378 1 636 Edwardsiella tarda species 0 2889 1 species Edwardsiella piscicida 1263550 1872 0 1 species Edwardsiella anguillarum 1821960 1446 0 1 2 3183 0 no rank 2676541 1578828 Edwardsiella sp. EA181011 species 0 1745 1 1 0 1438 1650654 Edwardsiella sp. LADL05-105 species 1 1394 0 species Edwardsiella ictaluri 67780 1 2 Obesumbacterium 82982 genus 10 0 865 855 0 species 82983 Obesumbacterium proteus 1 72273 Thiotrichales 21 order 0 21629 1 36 family 49 Piscirickettsiaceae 135616 5155 0 1 15 2 1 0 1068 Piscirickettsia 1237 genus 4 1 0 1064 1238 Piscirickettsia salmonis species 1 4 Cycloclasticus 34067 8 genus 0 1102 2 722 0 no rank 2621467 1 Cycloclasticus sp. P1 385025 species 0 336 1 0 386 728003 Cycloclasticus sp. PY97N species 1 372 0 species Cycloclasticus zancles 1329899 1 3 Thiomicrospira 933 6 genus 0 708 1 348 0 species Thiomicrospira cyclica 147268 species 92245 Thiomicrospira aerophila 354 0 1 1 3 genus 15 40222 Methylophaga 1829 0 species Methylophaga frappieri 754477 823 0 1 1 991 0 species 754476 Methylophaga nitratireducenticrescens 0 399 Hydrogenovibrio 28884 2 genus 2 1 397 0 species Hydrogenovibrio crunogenus 39765 1 15 1 0 14780 34064 Francisellaceae 12 family 1 2 1869285 Allofrancisella genus 3 0 735 1 0 732 594679 Allofrancisella guangzhouensis species 0 14033 262 Francisella 272 genus 12 1 1 573570 Francisella sp. TX077310 species 0 1334 2603 0 species Francisella philomiragia 28110 1 1 549298 Francisella halioticida species 0 796 1 1450 0 species Francisella noatunensis 657445 species 954 Francisella persica 873 0 1 1 species Francisella sp. CA97-1460 1542390 1114 0 803 0 species 622488 Francisella hispaniensis 1 0 1774 2610885 no rank 2 1 Francisella sp. FSC1006 1547445 species 0 1112 0 662 475375 Francisella sp. MA067296 species 1 species Francisella sp. TX077308 573569 653 0 1 2361 0 species Francisella tularensis 263 1 0 1673 135617 Thiotrichaceae family 5 5 1 2 1 0 1112 Beggiatoa 1021 genus 5 species Beggiatoa leptomitoformis 288004 1107 0 1 0 556 Thioploca 40751 6 genus 2 1 1 species Thioploca ingrica 40754 550 0 Vibrionales 135623 order 59 0 41380 1 43 42 1 41321 0 272 family Vibrionaceae 641 Grimontia 246861 6 genus 0 969 1 2 species 673 Grimontia hollisae 963 0 1 1 30 675 genus 662 Vibrio 32673 0 212663 Vibrio tasmaniensis species 0 744 1 1 638 0 species 1534743 Vibrio hyugaensis 1 species Vibrio mimicus 674 1342 0 1 785 0 species Vibrio breoganii 553239 717610 species group 0 12706 10 0 1616 Vibrio parahaemolyticus 670 species 1 1 0 385 190895 Vibrio rotiferianus species 1 1026 0 species 696485 Vibrio owensii 1 0 2185 Vibrio alginolyticus 663 species 1701 0 species subgroup 2315253 2 Vibrio antiquarius 150340 species 0 521 1 1180 0 species Vibrio diabolicus 50719 1 670 0 species 766224 Vibrio jasicida 1 1 Vibrio natriegens 691 species 0 1849 1 species 669 Vibrio harveyi 1432 0 Vibrio campbellii 680 species 0 1842 1 190893 Vibrio coralliilyticus species 0 1482 1 1 0 831 Vibrio scophthalmi 45658 species 1 Vibrio cholerae 666 species 0 1386 1 0 1107 Vibrio furnissii 29494 species 1662 0 species 676 Vibrio fluvialis 1 1 1891919 species group 0 612 Vibrio tubiashii 29498 species 0 612 1 1572 0 no rank 2614977 2 Vibrio sp. EJY3 1116375 species 0 925 1 1 species Vibrio sp. 2521-89 2014742 647 0 1 species 1435069 Vibrio tritonius 830 0 1 species Vibrio vulnificus 672 2375 0 2025808 Vibrio qinghaiensis species 0 400 1 Vibrio anguillarum 55601 species 0 901 1 species 687 Vibrio gazogenes 996 0 1 species Vibrio tapetis 52443 666 0 1 1 0 963 28173 Vibrio nigripulchritudo species 4 1 0 2821 Aliivibrio 511678 13 genus 0 848 40269 Aliivibrio salmonicida species 1 0 1154 668 Aliivibrio fischeri species 1 1 0 806 Aliivibrio wodanis 80852 species 4 1 0 3481 657 Photobacterium genus 12 1 941 0 species Photobacterium profundum 74109 1 1305 0 species Photobacterium gaetbulicola 1295392 0 1223 Photobacterium damselae 38293 species 1 1 1105 0 genus 2042066 species 1755811 Paraphotobacterium marinum 1105 0 1 0 3584 33811 no rank 2 0 1702 1248727 endosymbiont of unidentified scaly snail isolate Monju species 1 species 83406 gamma proteobacterium HdN1 1882 0 1 0 8827 Methylococcales 135618 131 order 13 1 12 1 0 8696 403 Methylococcaceae 59 family 1 5 genus 66 Methylomonas 416 5198 0 1714 0 no rank 2608980 1 1 1714 0 species 1727196 Methylomonas sp. DH-1 1040 0 species 421 Methylomonas methanica 1 1 871 0 species Methylomonas denitrificans 1538553 species Methylomonas koyamae 702114 1507 0 1 1 2 66 genus 413 Methylococcus 1559 0 1 0 1493 Methylococcus capsulatus 414 species genus 4 762296 Methylovulum 823 0 1 2 819 0 species Methylovulum psychrotolerans 1704499 1 13 genus 39773 Methylomicrobium 1057 0 1 2 species Methylomicrobium alcaliphilum 271065 1044 0 1 20 1 10775 0 5 order Legionellales 118969 9263 0 family 13 444 Legionellaceae 15 1 3 genus Tatlockia 465 532 0 1 2 1 species Tatlockia micdadei 451 529 0 genus 27 Legionella 445 8718 0 1 12 0 582 66969 Legionella waltersii species 1 1 545 0 species Legionella oakridgensis 29423 0 685 96230 Legionella fallonii species 1 Legionella spiritensis 452 species 0 410 1 28087 Legionella sainthelensi species 0 756 1 1 species Legionella pneumophila 446 2997 0 1 706 0 species 449 Legionella hackeliae 832 0 species Legionella longbeachae 450 1 409 0 species Legionella clemsonensis 1867846 1 1 45067 Legionella lansingensis species 0 460 1 species 2005262 Legionella endosymbiont of Polyplax serrata 309 0 4 1 0 1507 Coxiellaceae 118968 32 family genus 776 1252 0 2 1 0 1019 777 Coxiella burnetii species 1 2676648 no rank 0 233 Coxiella endosymbiont of Amblyomma americanum 325775 species 0 233 1 1 0 223 134284 no rank 1 species 1592897 Coxiella-like endosymbiont 223 0 0 97716 Xanthomonadales 135614 order 1063 54 1 14 1 17475 0 family 268 Rhodanobacteraceae 1775411 1 2 Luteibacter 242605 22 genus 0 1789 1 species 242606 Luteibacter rhizovicinus 1767 0 1 4 Dyella 231454 205 genus 0 6998 1 445710 Dyella thiooxydans species 0 2308 1 0 2193 1379159 Dyella jiangningensis species 1 2292 0 species 231455 Dyella japonica 1 2 Dokdonella 323413 genus 36 0 2971 1 0 2935 323415 Dokdonella koreensis species 1 2 34 genus 75309 Rhodanobacter 2677 0 2643 0 species 666685 Rhodanobacter denitrificans 1 70411 Frateuria genus 43 0 1756 1 2 1 species 81475 Frateuria aurantia 1713 0 1016 0 genus 2233801 1 1 1016 0 species Xanthomonadales bacterium D13 2021234 39 1 0 79178 32033 Xanthomonadaceae 993 family 3 1 5790 0 111 genus 83618 Pseudoxanthomonas 1 species Pseudoxanthomonas suwonensis 314722 4214 0 1 0 1465 415229 Pseudoxanthomonas spadix species 0 31924 338 Xanthomonas genus 1619 17 1 456327 Xanthomonas euvesicatoria species 0 1313 1 1 2145 0 species Xanthomonas sacchari 56458 2612 0 species 347 Xanthomonas oryzae 1 0 1646 56454 Xanthomonas hortorum species 1 species 56460 Xanthomonas vesicatoria 1613 0 1 species 343 Xanthomonas translucens 3264 0 1 1 1691 0 species 442694 Xanthomonas perforans 1 0 869 48664 Xanthomonas fragariae species 1 1137 0 species Xanthomonas albilineans 29447 0 1141 Xanthomonas phaseoli 1985254 species 1 1 366650 Xanthomonas alfalfae species 0 1048 1 0 4123 Xanthomonas campestris 339 species 1 56459 Xanthomonas vasicola species 0 969 2 species group 643453 5717 0 1 species Xanthomonas citri 346 4258 0 1 species 366648 Xanthomonas fuscans 1459 0 1017 0 species 53413 Xanthomonas axonopodis 1 1 9 40323 Stenotrophomonas 752 genus 0 27152 0 12351 995085 species group 1 1 species Stenotrophomonas maltophilia 40324 12351 0 0 1711 Stenotrophomonas rhizophila 216778 species 1 4 0 7223 196198 no rank 1 0 1771 Stenotrophomonas sp. WZN-1 2005046 species 0 1960 Stenotrophomonas sp. MYb57 1827305 species 1 1 Stenotrophomonas sp. LM091 1904944 species 0 1961 1531 0 species 1793721 Stenotrophomonas sp. KCTC 12332 1 0 3559 Stenotrophomonas acidaminiphila 128780 species 1 1 0 1556 83617 Stenotrophomonas nitritireducens species 1 5 150 genus Lysobacter 68 10860 0 1 species 435897 Lysobacter capsici 3077 0 0 2823 Lysobacter antibioticus 84531 species 1 1 0 2615 69 Lysobacter enzymogenes species 1 species 262324 Lysobacter gummosus 2195 0 2 1 0 1525 83614 Luteimonas 15 genus 1510 0 species Luteimonas sp. 100111 2006110 1 934 0 genus 1 Xylella 2370 2 1 species 2371 Xylella fastidiosa 933 0 1 5 0 1653 1240482 order 5 1 0 1653 1240483 Orbaceae 9 family 2 1 859 0 11 genus 1193503 Gilliamella 1 0 848 1196095 Gilliamella apicola species 0 785 1335631 Frischella genus 1 2 1 0 784 Frischella perrara 1267021 species 1 1 29 135624 Aeromonadales order 374 0 57187 28 1 56813 0 family 509 84642 Aeromonadaceae 1 2 11 genus 43947 Tolumonas 1344 0 0 1333 Tolumonas auensis 43948 species 1 2 1 0 2374 129577 Oceanimonas 27 genus 1 no rank 2636315 2347 0 species Oceanimonas sp. GK1 511062 2347 0 1 2 1 3115 0 genus 34 347533 Zobellella species 347534 Zobellella denitrificans 3081 0 1 18 1 48206 0 genus 3275 642 Aeromonas 1 645 Aeromonas salmonicida species 0 3307 1 0 2174 558964 Aeromonas aquatica species 1 0 10630 Aeromonas hydrophila 644 species 1 Aeromonas rivipollensis 948519 species 0 2251 species 196024 Aeromonas dhakensis 2306 0 1 8 257493 no rank 0 13946 1 species Aeromonas sp. ASNIH2 1636607 1430 0 1686 0 species Aeromonas sp. ASNIH5 1758179 1 1 1694 0 species 1636608 Aeromonas sp. ASNIH3 2033033 Aeromonas sp. CU5 species 0 1670 1 1 1920107 Aeromonas sp. ASNIH7 species 0 1694 1 2267 0 species Aeromonas sp. ASNIH4 1636609 0 1516 Aeromonas sp. ASNIH1 1636606 species 1 1 2033032 Aeromonas sp. CA23 species 0 1989 1 1671 0 species 648 Aeromonas caviae 1 species 652 Aeromonas schubertii 1840 0 0 4970 Aeromonas veronii 654 species 1 651 Aeromonas media species 0 1836 1 1 3 Oceanisphaera 225143 21 genus 0 1265 0 826 1416627 Oceanisphaera profunda species 1 1 0 418 Oceanisphaera sp. AMac2203 1903694 species 346 order Alteromonadales 135622 68483 0 1 105 family 3 267889 Colwelliaceae 5201 0 1 9 Colwellia 28228 14 genus 0 4416 1 6 1 0 792 Colwellia psychrerythraea 28229 species 3 no rank 196834 2741 0 Colwellia sp. MT41 58049 species 0 1106 1 733 0 species 1816218 Colwellia sp. PAMC 20917 1 1 0 902 Colwellia sp. PAMC 21821 1816219 species 1 species 1967665 Colwellia beringensis 869 0 genus 4 1518149 Thalassotalea 782 0 1 2 0 778 1763536 Thalassotalea crassostreae species 1 1 3 family 6 267891 Moritellaceae 819 0 813 0 5 genus 58050 Moritella 2 1 0 808 80854 Moritella viscosa species 1 1583 0 family 4 267894 Psychromonadaceae 4 1 0 1579 67572 Psychromonas 10 genus 3 1 species Psychromonas ingrahamii 357794 787 0 1 0 782 2614957 no rank 1 species 314282 Psychromonas sp. CNPT3 782 0 1 16078 0 family 27 Pseudoalteromonadaceae 267888 25 1 1 24 genus 281 53246 Pseudoalteromonas 16051 0 0 3497 194690 no rank 5 741 0 species 1514074 Pseudoalteromonas sp. NC201 1 0 839 Pseudoalteromonas sp. Bsw20308 283699 species 1 1 1761891 Pseudoalteromonas sp. 13-15 species 0 642 1 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 736 0 234831 Pseudoalteromonas sp. SM9913 species 0 539 1 0 548 Pseudoalteromonas nigrifaciens 28109 species 1 652 0 species Pseudoalteromonas piratica 1348114 1 1 43657 Pseudoalteromonas luteoviolacea species 0 673 1 622 0 species Pseudoalteromonas tunicata 314281 1 species Pseudoalteromonas aliena 247523 595 0 1234 0 species 298657 Pseudoalteromonas spongiae 1 629 0 species Pseudoalteromonas arctica 394751 1 851 0 species 43658 Pseudoalteromonas rubra 1 1 species Pseudoalteromonas piscicida 43662 746 0 43659 Pseudoalteromonas tetraodonis species 0 511 1 1 0 1307 288 Pseudoalteromonas atlantica species 1 0 486 Pseudoalteromonas espejiana 28107 species 1 0 542 176102 Pseudoalteromonas agarivorans species Pseudoalteromonas marina 267375 species 0 469 1 1 Pseudoalteromonas issachenkonii 152297 species 0 565 1 species Pseudoalteromonas phenolica 161398 623 0 1 579 0 species Pseudoalteromonas haloplanktis 228 1 0 641 Pseudoalteromonas translucida 166935 species family 135 72275 Alteromonadaceae 22796 0 1 29 0 736 Agarivorans 261825 7 genus 2 1 0 729 680279 Agarivorans gilvus species 1 10 1 0 6910 226 Alteromonas genus 102 0 641 Alteromonas addita 287094 species 1 no rank 2614992 1656 0 3 Alteromonas sp. RW2A1 1917158 species 0 583 1 1 Alteromonas sp. Mac1 1777491 species 0 727 0 346 2058133 Alteromonas sp. MB-3u-76 species 1 0 1045 314275 Alteromonas mediterranea species 1 species Alteromonas stellipolaris 233316 788 0 1 1 species 715451 Alteromonas naphthalenivorans 662 0 species 589873 Alteromonas australica 517 0 1 1 1499 0 species 28108 Alteromonas macleodii 1 genus 1621534 523 0 species 326544 Paraglaciecola psychrophila 523 0 1 2 1 0 1285 Lacimicrobium 1751872 31 genus 1 species 1526571 Lacimicrobium alkaliphilum 1254 0 genus 1 Glaciecola 89404 1234 0 1 3 1 0 505 2618684 no rank 505 0 species 983545 Glaciecola sp. 4H-3-7+YE-5 1 1 0 728 300231 Glaciecola nitratireducens species 10 1 0 11973 2742 Marinobacter 143 genus 1 species 1420917 Marinobacter salarius 1715 0 0 668 330734 Marinobacter psychrophilus species 1 species 1033846 Marinobacter adhaerens 1177 0 1 3 3722 0 no rank 83889 0 1387 Marinobacter sp. LQ44 1749259 species 1 1 1624 0 species Marinobacter sp. CP1 1671721 1 711 0 species Marinobacter sp. BSs20148 490759 2743 Marinobacter hydrocarbonoclasticus species 0 2315 1 1232 0 species Marinobacter similis 1420916 1 1874317 Marinobacter salinus species 0 1001 1 0 17614 267890 Shewanellaceae 59 family 25 1 24 1 0 17555 22 Shewanella 298 genus 1 0 1200 Shewanella amazonensis 60478 species species Shewanella halifaxensis 271098 788 0 1 1 359303 Shewanella loihica species 0 1200 1 523 0 species Shewanella bicestrii 2018305 species Shewanella psychrophila 225848 814 0 1 0 715 Shewanella japonica 93973 species 1 545 0 species Shewanella piezotolerans 404011 1 0 656 Shewanella marisflavi 260364 species 1 3267 0 no rank 196818 6 456 0 species Shewanella sp. W3-18-1 351745 1 1 Shewanella sp. Pdp11 2059264 species 0 507 1 species Shewanella sp. ANA-3 94122 463 0 1 species Shewanella sp. MR-4 60480 582 0 1 species Shewanella sp. MR-7 60481 642 0 1 species Shewanella sp. WE21 2029986 617 0 1 species 70864 Shewanella pealeana 648 0 0 666 24 Shewanella putrefaciens species 1 1 species Shewanella oneidensis 70863 492 0 1 species Shewanella sediminis 271097 843 0 1 0 2117 62322 Shewanella baltica species 1 species 60217 Shewanella violacea 657 0 Shewanella woodyi 60961 species 0 724 1 1 0 691 Shewanella frigidimarina 56812 species 1 0 711 192073 Shewanella denitrificans species 1883 0 5 family Idiomarinaceae 267893 6 1 5 1 1878 0 genus 12 135575 Idiomarina 1 species 1096243 Idiomarina piscisalsi 416 0 2 0 1164 2614829 no rank 1 0 575 Idiomarina sp. X4 2055892 species species Idiomarina sp. OT37-5b 2100422 589 0 1 1 species Idiomarina loihiensis 135577 286 0 2163 0 12 family 267892 Ferrimonadaceae 3 1 genus 19 44011 Ferrimonas 2151 0 1 2 44012 Ferrimonas balearica species 0 2132 1 32 1 24062 0 order 7 135625 Pasteurellales Pasteurellaceae 712 family 1050 0 24055 1 31 3 1 2267 0 genus 86 416916 Aggregatibacter 0 1172 732 Aggregatibacter aphrophilus species 1 0 1009 714 Aggregatibacter actinomycetemcomitans species 1 5 1 0 3435 Actinobacillus 713 30 genus 1 0 652 Actinobacillus succinogenes 67854 species 1 species Actinobacillus pleuropneumoniae 715 982 0 1 species 716 Actinobacillus suis 845 0 1 species Actinobacillus equuli 718 926 0 1 3 Pasteurella 745 genus 30 0 2296 1 0 656 754 Pasteurella dagmatis species 1 1610 0 species Pasteurella multocida 747 genus 41 Haemophilus 724 5615 0 1 6 1 0 807 729 Haemophilus parainfluenzae species 1 2609962 no rank 0 628 1 712310 Haemophilus sp. oral taxon 036 species 0 628 0 1038 [Haemophilus] ducreyi 730 species 1 species Haemophilus influenzae 727 2600 0 1 0 501 Haemophilus pittmaniae 249188 species 1 2 genus 697331 Basfia 957 0 1 2 157673 [Mannheimia] succiniciproducens species 0 955 1 11 genus Bibersteinia 476528 1814 0 1 2 1 species 47735 Bibersteinia trehalosi 1803 0 2094023 genus 0 1478 1 1478 0 species 738 Glaesserella parasuis 1 2 1 0 1148 214906 Histophilus genus 1 1 1147 0 species Histophilus somni 731 1 2 genus 7 155493 Gallibacterium 1121 0 0 1114 750 Gallibacterium anatis species 1 55 genus 75984 Mannheimia 2874 0 1 4 1 877 0 species Mannheimia haemolytica 75985 1 0 899 2645054 no rank Mannheimia sp. USDA-ARS-USMARC-1261 1432056 species 0 899 1 85404 Mannheimia varigena species 0 1043 1 50934 0 529 order Oceanospirillales 135619 69 1 family 15 1920240 Kangiellaceae 2253 0 1 6 5 1 2238 0 46 genus 261963 Kangiella Kangiella profundi 1561924 species 0 687 1 1 914150 Kangiella geojedonensis species 0 377 0 670 261964 Kangiella koreensis species 1 1 0 458 1144748 Kangiella sediminilitoris species 4 1 0 1981 255527 Saccharospirillaceae 7 family 0 669 230494 genus 1 Reinekea forsetii 1336806 species 0 669 1 1445504 Gynuella 11 genus 0 1305 1 2 1 species Gynuella sunshinyii 1445505 1294 0 430 family Halomonadaceae 28256 30479 0 1 31 8 genus Chromohalobacter 42054 1521 0 1 2 1513 0 species Chromohalobacter salexigens 158080 1 376488 Halotalea 57 genus 0 1727 1 2 1 0 1670 Halotalea alkalilenta 376489 species 0 2257 404432 Salinicola 76 genus 2 1 Salinicola tamaricis 1771309 species 0 2181 1 114403 no rank 0 647 4 genus 1495768 408 0 1 0 408 1495769 Candidatus Evansia muelleri species 1 1 2 114185 Candidatus Carsonella genus 1 0 50 1 114186 Candidatus Carsonella ruddii species 0 49 235572 genus 0 189 1 1 species Candidatus Portiera aleyrodidarum 91844 189 0 genus 6 Cobetia 204286 2167 0 1 2 1 0 2161 28258 Cobetia marina species genus 22 504090 Kushneria 3614 0 1 3 1 species 157779 Kushneria marisflavi 1637 0 1 0 1955 698828 Kushneria konosiri species 18116 0 326 genus Halomonas 2745 15 1 1 507626 Halomonas chromatireducens species 0 1535 1 species Halomonas huangheensis 1178482 1150 0 1 475662 Halomonas beimenensis species 0 2465 8 no rank 2609666 8705 0 1 2136172 Halomonas sp. SF2003 species 0 2003 species Halomonas sp. R57-5 1610576 1005 0 1 0 880 Halomonas sp. KO116 1504981 species 1 1 1883416 Halomonas sp. 1513 species 0 2603 1 species 1949203 Halomonas sp. 'Soap Lake #6' 533 0 537 0 species Halomonas sp. 'Soap Lake #7' 1962264 1 1 574 0 species Halomonas sp. GT 1971364 1 1118153 Halomonas sp. GFAJ-1 species 0 570 1 species Halomonas hydrothermalis 115561 1342 0 1 614 0 species Halomonas campaniensis 213554 1 1979 0 species 1897729 Halomonas aestuarii 12 1 6549 0 family 69 135620 Oceanospirillaceae 1 2 Marinobacterium 48075 6 genus 0 1786 1 species Marinobacterium aestuarii 1821621 1780 0 2 1 818 0 genus 2 188907 Oleispira 1 188908 Oleispira antarctica species 0 816 1 4 28253 Marinomonas 4 genus 0 2589 1 196814 no rank 0 913 913 0 species 400668 Marinomonas sp. MWYL1 1 1 0 814 119864 Marinomonas mediterranea species species Marinomonas posidonica 936476 858 0 1 721 0 genus 6 Bacterioplanes 1537406 2 1 species 1249553 Bacterioplanes sanyensis 715 0 1 genus 187492 566 0 1 0 566 187493 Thalassolituus oleivorans species 1 191033 Oleiphilaceae 1 family 0 644 1 3 2 1 0 643 141450 Oleiphilus genus 1 1 0 642 Oleiphilus messinensis 141451 species 7238 0 family 67 Alcanivoracaceae 224372 9 1 0 1151 Ketobacter 2025617 genus 9 2 1 1 species Ketobacter alkanivorans 1917421 1142 0 0 6020 59753 Alcanivorax genus 81 6 1 285091 Alcanivorax dieselolei species 0 1689 1 species 59754 Alcanivorax borkumensis 443 0 1 0 1936 Alcanivorax pacificus 1306787 species 1 1 1094342 Alcanivorax xenomutans species 0 1424 1 0 447 2638842 no rank 447 0 species Alcanivorax sp. NBRC 101098 1113728 1 3 1 0 1261 224379 Hahellaceae 5 family 1256 0 6 genus 158481 Hahella 2 1 158327 Hahella chejuensis species 0 1250 1 order 55 Immundisolibacterales 1934945 2502 0 1 4 1 3 1934946 Immundisolibacteraceae family 91 0 2447 0 2356 1934947 Immundisolibacter 25 genus 2 1 1810504 Immundisolibacter cernigliae species 0 2331 1 246310 0 1154 order Pseudomonadales 72274 129 1 Pseudomonadaceae 135621 family 1254 0 214257 1 86 1 80 286 Pseudomonas genus 7702 0 205577 1 Pseudomonas silesiensis 1853130 species 0 1189 Pseudomonas cremoricolorata 157783 species 0 1013 1 0 31276 136845 species group 6 1 species 47885 Pseudomonas oryzihabitans 2129 0 species Pseudomonas plecoglossicida 70775 1471 0 1 0 2966 Pseudomonas fulva 47880 species 1 0 17458 Pseudomonas putida 303 species 1 1 species 78327 Pseudomonas mosselii 3365 0 species Pseudomonas monteilii 76759 3887 0 1 species Pseudomonas parafulva 157782 2255 0 1 species group 136843 25892 0 9 47879 Pseudomonas corrugata species 0 1111 1 972 0 species Pseudomonas orientalis 76758 1 1 2248 0 species 380021 Pseudomonas protegens 1 1250 0 species 76761 Pseudomonas veronii 1 Pseudomonas poae 200451 species 0 1010 1 47878 Pseudomonas azotoformans species 0 2220 Pseudomonas fluorescens 294 species 0 14733 1 1 species Pseudomonas trivialis 200450 1174 0 species 75612 Pseudomonas mandelii 1174 0 1 1 1368 0 species Pseudomonas cerasi 1583341 Pseudomonas frederiksbergensis 104087 species 0 2876 1 1637 0 species 312306 Pseudomonas entomophila 1 0 3179 930166 Pseudomonas brassicacearum species 1 1 2235 0 species Pseudomonas psychrotolerans 237610 136841 species group 0 27743 6 1 2713 0 species subgroup 1232139 species 1149133 Pseudomonas furukawaii 2713 0 1 species 300 Pseudomonas mendocina 6969 0 1 1 53412 Pseudomonas resinovorans species 0 2291 1 species 287 Pseudomonas aeruginosa 8593 0 1 0 4968 53408 Pseudomonas citronellolis species 1 0 2209 43263 Pseudomonas alcaligenes species 1 0 1093 219572 Pseudomonas antarctica species 2 11591 0 species group 136842 species 296 Pseudomonas fragi 3446 0 1 species Pseudomonas chlororaphis 587753 8145 0 1 1 1346 0 species 237609 Pseudomonas alkylphenolica 1 0 1781 101564 Pseudomonas alcaliphila species 8 species group 136849 17894 0 46257 Pseudomonas avellanae species 0 1008 1 0 3375 251698 species subgroup 2 0 1641 47877 Pseudomonas amygdali species 1 0 1734 29438 Pseudomonas savastanoi species 1 species Pseudomonas syringae group genomosp. 3 251701 2108 0 1 1554 0 species Pseudomonas viridiflava 33069 1 1 species Pseudomonas cichorii 36746 1070 0 1 1131 0 no rank 2775504 1 1206777 Pseudomonas sp. Lz4W species 0 1131 251695 species subgroup 0 7648 1 1 Pseudomonas syringae 317 species 0 7648 1 species Pseudomonas rhizosphaerae 216142 1382 0 2 136846 species group 0 12652 578833 species subgroup 0 11007 1 1 0 11007 316 Pseudomonas stutzeri species 1 0 1645 74829 Pseudomonas balearica species 1 0 2385 65741 Pseudomonas knackmussii species 30 0 42635 196821 no rank 1 species Pseudomonas sp. ATCC 13867 1294143 2622 0 1 671 0 species 1981174 Pseudomonas sp. M30-35 1 1500687 Pseudomonas sp. St29 species 0 2022 1 species Pseudomonas sp. UW4 1207075 1024 0 1 species Pseudomonas sp. TKP 1415630 1165 0 1206 0 species Pseudomonas sp. XWY-1 2069256 1 1 0 1438 2018067 Pseudomonas sp. FDAARGOS_380 species species 2083053 Pseudomonas sp. SWI44 1002 0 1 1283291 Pseudomonas sp. URMO17WK12:I11 species 0 2237 1 2067572 Pseudomonas sp. NC02 species 0 1290 1 1 1542 0 species 1259844 Pseudomonas sp. FGI182 1571 0 species Pseudomonas sp. LH1G9 2083055 1 1028989 Pseudomonas sp. StFLB209 species 0 1575 1 1 1149 0 species 1930532 Pseudomonas sp. CC6-YY-74 1 species Pseudomonas sp. SWI36 2083052 1314 0 1 Pseudomonas sp. TCU-HL1 1856685 species 0 2096 1659194 Pseudomonas sp. GR 6-02 species 0 1081 1 species Pseudomonas sp. DR 5-09 1534110 1201 0 1 species 2083054 Pseudomonas sp. LG1D9 1058 0 1 1478 0 species 1931241 Pseudomonas sp. S-6-2 1 1 1107 0 species Pseudomonas sp. HLS-6 2049589 species Pseudomonas sp. SWI6 2083051 998 0 1 Pseudomonas sp. VLB120 69328 species 0 1108 1 1 1563 0 species Pseudomonas sp. CCOS 191 1649877 1 0 1702 Pseudomonas sp. MRSN12121 1611770 species 1 0 2071 Pseudomonas sp. Os17 1500686 species species 1898684 Pseudomonas sp. LPH1 1671 0 1 1 1511 0 species 1636610 Pseudomonas sp. PONIH3 Pseudomonas sp. MYb193 1827300 species 0 844 1 0 1318 1338689 Pseudomonas sp. JY-Q species 1 1 0 2233 198620 Pseudomonas koreensis species 1 Pseudomonas versuta 1788301 species 0 1072 1 0 1148 244566 Pseudomonas lurida species 2 1 665 0 genus 5 1849530 Oblitimonas species Oblitimonas alkaliphila 1697053 660 0 1 351 subfamily 0 6761 3 3 1 0 6761 352 Azotobacter genus 42 3962 0 species 353 Azotobacter chroococcum 1 species 354 Azotobacter vinelandii 2757 0 1 42 1 0 30899 468 Moraxellaceae family 92 1 11 100 genus Psychrobacter 497 5023 0 1 0 458 Psychrobacter cryohalolentis 330922 species species Psychrobacter urativorans 45610 364 0 1 0 539 Psychrobacter arcticus 334543 species 1 3008 0 no rank 196806 6 1 0 634 349106 Psychrobacter sp. PRwf-1 species 1 Psychrobacter sp. P11G5 1699624 species 0 420 686 0 species 1720344 Psychrobacter sp. AntiMn-1 1 0 416 Psychrobacter sp. G 571800 species 1 0 474 1699622 Psychrobacter sp. P2G3 species 1 0 378 Psychrobacter sp. DAB_AL43B 1028416 species 1 1 0 554 261164 Psychrobacter alimentarius species 1 25 469 Acinetobacter 265 genus 0 22336 487316 Acinetobacter soli species 0 495 1 species 40215 Acinetobacter junii 827 0 1 species Acinetobacter radioresistens 40216 889 0 1 1 Acinetobacter equi 1324350 species 0 746 1 species Acinetobacter johnsonii 40214 576 0 7 no rank 196816 4445 0 1 600 0 species Acinetobacter sp. ACNIH2 1758189 518 0 species 1407071 Acinetobacter sp. TGL-Y2 1 728 0 species Acinetobacter sp. ACNIH1 1636603 1 796 0 species Acinetobacter sp. LoGeW2-3 1808001 1 1 320 0 species 2079596 Acinetobacter sp. SWBY1 1 species 1646498 Acinetobacter sp. TTH0-4 769 0 1 714 0 species Acinetobacter sp. NCu2D-2 1608473 species Acinetobacter indicus 756892 855 0 1 1 species 1148157 Acinetobacter oleivorans 759 0 1 744 0 species Acinetobacter haemolyticus 29430 1 species Acinetobacter larvae 1789224 410 0 5 8981 0 species group 909768 species Acinetobacter nosocomialis 106654 810 0 1 species Acinetobacter pittii 48296 2815 0 1 3200 0 species Acinetobacter baumannii 470 1 1 species Acinetobacter calcoaceticus 471 1608 0 1 0 548 1785128 Acinetobacter lactucae species 804 0 species Acinetobacter bereziniae 106648 1 1 Acinetobacter schindleri 108981 species 0 758 1 202950 species 0 782 1 strain Acinetobacter sp. ADP1 62977 782 0 5 1 3448 0 54 genus Moraxella 475 1 0 1223 Moraxella osloensis 34062 species 29433 Moraxella ovis species 0 479 1 species 386891 Moraxella bovoculi 938 0 1 Moraxella catarrhalis 480 species 0 754 1 1 4 135615 Cardiobacteriales 26 order 0 378 352 0 1 family 868 Cardiobacteriaceae 3 1 0 351 Dichelobacter 869 genus 2 2 1 1 349 0 species Dichelobacter nodosus 870 Cellvibrionales 1706369 71 order 0 14424 1 29 family 51 1706371 Cellvibrionaceae 6443 0 1 12 genus 24 Cellvibrio 10 2771 0 1 4 1 917 0 species Cellvibrio japonicus 155077 2624793 no rank 0 1830 2 1 1204 0 species 1987723 Cellvibrio sp. PSBB006 1 626 0 species Cellvibrio sp. PSBB023 1945512 0 1085 Simiduia 447467 6 genus 2 1 1 0 1079 Simiduia agarivorans 447471 species 2 1 0 585 Saccharophagus 316625 1 genus 1 0 584 Saccharophagus degradans 86304 species 1199 0 genus 2036021 1 1 species 1737490 Agarilytica rhodophyticola 1199 0 1 2 2425 Teredinibacter 6 genus 0 752 0 746 Teredinibacter turnerae 2426 species 1 7 1 0 2208 1706375 Spongiibacteraceae 16 family 1 2 genus 8 1084558 Oceanicoccus 998 0 0 990 Oceanicoccus sagamiensis 716816 species 1 2 1 0 588 Zhongshania 1434050 genus 12 1 0 576 Zhongshania aliphaticivorans 1470434 species 1 2 6 genus Spongiibacter 630749 606 0 600 0 no rank 2631504 1 0 600 1620392 Spongiibacter sp. IMCC21906 species 1 22 family 1706373 Microbulbiferaceae 3673 0 1 5 1 4 48073 Microbulbifer 25 genus 0 3651 1 0 1087 252514 Microbulbifer thermotolerans species 0 1133 1769779 Microbulbifer aggregans species 1 1 species 260552 Microbulbifer agarilyticus 1406 0 1 4 49 family 1706372 Halieaceae 2029 0 0 1980 1217416 Halioglobus genus 58 3 1 1 1032 0 species Halioglobus pacificus 930806 890 0 species 930805 Halioglobus japonicus 1 0 3643 1807140 class 6 order 55 225057 Acidithiobacillales 3643 0 1 6 1 5 225058 Acidithiobacillaceae family 34 0 3588 Acidithiobacillus 119977 genus 38 0 3554 1 4 1240 0 species 33059 Acidithiobacillus caldus 1 species 160808 Acidithiobacillus ferrivorans 1089 0 1 920 Acidithiobacillus ferrooxidans species 0 1187 1 0 581 2498710 clade 5 5 0 581 67814 phylum 5 1 581 0 1 class Caldisericia 693071 1 4 693072 Caldisericales order 4 0 580 0 576 693073 Caldisericaceae 2 family 3 1 2 1 574 0 genus 3 693074 Caldisericum 1 571 0 species 693075 Caldisericum exile 59 phylum 203691 69376 0 59 1 69376 0 150 class Spirochaetia 203692 1643688 order 0 5604 9 1 9 170 Leptospiraceae family 12 0 5604 Turneriella 338321 genus 4 0 826 1 2 1 822 0 species Turneriella parva 29510 19 genus 171 Leptospira 4766 0 1 6 1 Leptospira borgpetersenii 174 species 0 908 1 691 0 species 28183 Leptospira santarosai species Leptospira biflexa 172 748 0 1 Leptospira interrogans 173 species 0 1625 1 Leptospira alstonii 28452 species 0 775 1 42 1 0 50755 136 Spirochaetales order 609 137 Spirochaetaceae 445 family 0 39884 1 24 3 1 0 4192 146 Spirochaeta 20 genus 1 Spirochaeta africana 46355 species 0 1794 Spirochaeta thermophila 154 species 0 2378 1 0 1804 Sediminispirochaeta 1911556 6 genus 2 1 1798 0 species Sediminispirochaeta smaragdinae 55206 1 4 1 4888 0 20 genus 399320 Sphaerochaeta 0 1780 Sphaerochaeta pleomorpha 1131707 species 1 species Sphaerochaeta coccoides 273376 1278 0 1 Sphaerochaeta globosa 1131703 species 0 1810 1 0 27192 Treponema 157 350 genus 12 1 Treponema caldarium 215591 species 0 1200 1 species Treponema pedis 409322 947 0 1 1 Treponema azotonutricium 150829 species 0 1779 species Treponema paraluiscuniculi 53435 253 0 1 4538 0 species 221027 Treponema putidum 1 0 1783 88058 Treponema primitia species 1 1 81028 Treponema brennaborense species 0 3564 167 Treponema succinifaciens species 0 6598 1 0 246 Treponema pallidum 160 species 1 1 2638727 no rank 0 3770 1 species Treponema sp. OMZ 838 1539298 3770 0 species Treponema denticola 158 2164 0 1 1363 0 1 genus Salinispira 1616789 2 1 1 0 1362 1307761 Salinispira pacifica species 17 1 0 10262 1643685 Borreliaceae 17 family 0 6427 Borrelia 138 genus 107 8 1 1 0 410 143 Borrelia anserina species 1 140 Borrelia hermsii species 0 1133 141 Borrelia parkeri species 0 1131 1 47466 Borrelia miyamotoi species 0 1349 1 1 0 1158 Borrelia turicatae 142 species 547 0 species 44449 Borrelia recurrentis 1 1 40834 Borrelia duttonii species 0 592 111 genus 64895 Borreliella 3818 0 1 8 1 species Borreliella bissettii 64897 496 0 species 1674146 Borrelia mayonii 642 0 1 1 624 0 species 139 Borreliella burgdorferi 1 725 0 species 29519 Borreliella garinii 1 0 379 Borreliella bavariensis 664662 species 1 62088 Borreliella valaisiana species 0 341 1 500 0 species Borreliella afzelii 29518 order 3 Brachyspirales 1643686 12867 0 1 7 12864 0 265 family 143786 Brachyspiraceae 6 1 1 5 182 genus 29521 Brachyspira 12599 0 Brachyspira murdochii 84378 species 0 2110 1 0 2914 84377 Brachyspira intermedia species 1 0 2742 159 Brachyspira hyodysenteriae species 1 1 0 4651 52584 Brachyspira pilosicoli species 3 2323 no rank 0 1172 3 1172 0 clade 1783234 1 phylum 95818 278 0 1 278 0 no rank 1895827 278 0 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 1 2 95901 clade 0 894 894 0 class 2497643 2 2 order 2497644 894 0 2497645 family 0 894 2 1 2 73 genus Candidatus Babela 1551504 894 0 1 821 0 species Candidatus Babela massiliensis 673862 25 0 8151 200783 phylum 1 25 187857 Aquificae 22 class 0 8151 1485951 Desulfurobacteriales order 4 0 1660 1 4 0 1656 Desulfurobacteriaceae 558314 family 4 3 1 64159 genus 0 1069 1 species 64160 Desulfurobacterium thermolithotrophum 1069 0 1 0 583 171868 genus 1 species 228745 Thermovibrio ammonificans 583 0 1 17 order Aquificales 32069 6469 0 1 20 0 3212 Aquificaceae 64898 family 28 13 1 2713 genus 0 197 1 197 0 species Aquifex aeolicus 63363 1 1 3 3 genus Thermocrinis 75905 502 0 1 214 0 species 75906 Thermocrinis ruber 1 species 136094 Thermocrinis albus 285 0 1 6 genus 43 168657 Hydrogenobaculum 2240 0 5 0 2197 2622382 no rank Hydrogenobaculum sp. SHO 547145 species 0 453 1 1 0 453 547146 Hydrogenobaculum sp. SN species 1 0 453 547144 Hydrogenobaculum sp. HO species species Hydrogenobaculum sp. 3684 547143 453 0 1 385 0 species Hydrogenobaculum sp. Y04AAS1 380749 1 1 2 genus 1 939 Hydrogenobacter 245 0 1 species Hydrogenobacter thermophilus 940 244 0 5 1 2776 0 family 21 224027 Hydrogenothermaceae 182899 genus 0 611 1 611 0 species 309805 Persephonella marina 1 1 3 212790 Sulfurihydrogenibium 7 genus 0 2144 1 1289 0 no rank 2619248 1289 0 species Sulfurihydrogenibium sp. YO3AOP1 436114 1 309806 Sulfurihydrogenibium azorense species 0 848 1 1 0 464 90150 no rank 1 0 464 412592 genus species Thermosulfidibacter takaii 412593 464 0 1 13 0 13027 508458 phylum 1 13 38 class Synergistia 649775 13027 0 649776 Synergistales order 39 0 12989 1 12 1 11 Synergistaceae 649777 302 family 0 12950 1 2 1 genus 49894 Acetomicrobium 707 0 species Acetomicrobium mobile 97477 706 0 1 2 1 0 9995 Cloacibacillus 508459 genus 21 species 1197717 Cloacibacillus porcorum 9974 0 1 1 genus Thermovirga 336260 471 0 1 2 species Thermovirga lienii 336261 470 0 1 2 1 1045 0 14 genus 81461 Thermanaerovibrio Thermanaerovibrio acidaminovorans 81462 species 0 1031 1 0 430 Aminobacterium 81466 2 genus 2 1 species Aminobacterium colombiense 81468 428 0 1 102 clade 1783257 1042903 0 4725 0 phylum 204428 25 class 4 204429 Chlamydiia 4725 0 1 25 order 1 Chlamydiales 51291 2659 0 1 14 2658 0 5 family Chlamydiaceae 809 13 1 12 2653 0 no rank 1113537 0 2653 Chlamydia 810 149 genus 12 1 1 0 190 Chlamydia felis 83556 species 1 162 0 species Chlamydia pecorum 85991 species 83558 Chlamydia pneumoniae 137 0 1 1 314 0 species Chlamydia psittaci 83554 species Chlamydia caviae 83557 167 0 1 1 83559 Chlamydia suis species 0 162 171 0 species Chlamydia trachomatis 813 1 species 83560 Chlamydia muridarum 201 0 1 1 species Chlamydia avium 1457141 220 0 species 1457153 Chlamydia gallinacea 607 0 1 0 173 83555 Chlamydia abortus species 1 0 2062 1963360 Parachlamydiales order 1 10 1 1 3 92712 Simkaniaceae 4 family 0 245 2 1 241 0 3 genus Simkania 34093 Simkania negevensis 83561 species 0 238 1 92713 Parachlamydiaceae 2 family 0 1456 1 3 1 83551 genus 0 656 83552 Parachlamydia acanthamoebae species 0 656 1 1 0 798 282132 genus 1 species Candidatus Protochlamydia naegleriophila 389348 798 0 360 0 1 family Waddliaceae 92714 3 1 2 1 359 0 genus 3 Waddlia 71666 1 species Waddlia chondrophila 71667 356 0 phylum 13 Verrucomicrobia 74201 1006832 0 1 29 2 3721 0 no rank 417295 1 2011 0 species Verrucomicrobia bacterium IMCC26134 1637999 1710 0 species 2026799 Verrucomicrobia bacterium 1 6 1 992337 0 33 class 203494 Verrucomicrobiae 0 992304 48461 Verrucomicrobiales 41 order 5 1 4 1 0 992263 Akkermansiaceae 1647988 53 family 1 3 genus 21 239934 Akkermansia 992210 0 Akkermansia glycaniphila 1679444 species 0 3310 1 0 988879 239935 Akkermansia muciniphila species 1 1955630 Methylacidiphilae class 7 0 699 1 5 692 0 order 2 Methylacidiphilales 717963 4 1 Methylacidiphilaceae 717964 1 family 0 690 1 3 2 genus 511745 689 0 1 species 511746 Methylacidiphilum infernorum 441 0 248 0 species Methylacidiphilum fumariolicum 591154 1 3 1 147 0 2 class Spartobacteria 134549 2 1 145 0 genus 4 134550 Candidatus Xiphinematobacter 1 no rank 2648876 141 0 1 141 0 species Candidatus Xiphinematobacter sp. Idaho Grape 1704307 12 1 9915 0 84 class Opitutae 414999 order 9 Puniceicoccales 415001 763 0 1 4 3 1 0 754 Puniceicoccaceae 415002 family 1 1 2 Coraliomargarita 442430 genus 23 0 753 1 Coraliomargarita akajimensis 395922 species 0 730 1 7 216 order 415000 Opitutales 9068 0 1 6 family 108 134623 Opitutaceae 8852 0 no rank 278955 3721 0 1 0 3721 Opitutaceae bacterium TAV5 794903 species 1 genus 39 1961799 Lacunisphaera 2606 0 1 2 1 species Lacunisphaera limnophila 1838286 2567 0 2 1 0 2417 178440 Opitutus genus 20 0 2397 Opitutus terrae 107709 species 1 203682 Planctomycetes phylum 9 0 21999 1 40 7 1 0 4370 666505 Phycisphaerae class 54 2 2483366 order 0 2041 2 2483367 family 0 2041 2 2483368 genus 0 2041 species 1941349 Phycisphaerae bacterium ST-PulAB-D4 1038 0 1 1 0 1003 1940790 Phycisphaerae bacterium L21-RPul-D3 species 4 1 2275 0 order 60 666506 Phycisphaerales 3 1 2215 0 family 18 666507 Phycisphaeraceae 2 1 2197 0 25 genus Phycisphaera 666508 1 Phycisphaera mikurensis 547188 species 0 2172 4 2517206 class 0 1049 1127829 Candidatus Brocadiales 4 order 0 1049 1 4 1045 0 6 family 1127830 Candidatus Brocadiaceae 3 1 1 2 1 genus Candidatus Kuenenia 380738 1039 0 0 1038 Candidatus Kuenenia stuttgartiensis 174633 species 1 203683 Planctomycetia 99 class 0 16571 1 28 0 2075 2691354 order 6 4 1204 0 family 2691357 2 1 539 0 19 genus Pirellula 123 520 0 species 125 Pirellula staleyi 1 2 1 0 665 Rhodopirellula 265488 genus 1 0 664 Rhodopirellula baltica 265606 species 1 2 0 871 2691358 family genus 1 Thermogutta 1676125 871 0 1 2 1 870 0 species Thermogutta terrifontis 1331910 2691355 order 0 1478 3 3 1 0 1478 Gemmataceae 1914233 1 family 7 genus Gemmata 113 1477 0 1 2 1 0 1470 2622970 no rank 0 1470 Gemmata sp. SH-PL17 1630693 species 1 7 0 4916 2691356 order 1 7 family 51 1763524 Isosphaeraceae 4916 0 2 1 0 1091 127 Isosphaera 8 genus 128 Isosphaera pallida species 0 1083 1 2 1 0 2398 Paludisphaera 1763521 29 genus 1 0 2369 1387353 Paludisphaera borealis species genus 7 Singulisphaera 466152 1376 0 1 2 species Singulisphaera acidiphila 466153 1369 0 1 1 11 order 254 Planctomycetales 112 8003 0 10 1 0 7749 126 Planctomycetaceae family 41 0 923 Rubinisphaera 1649490 3 genus 2 1 1 920 0 species 119 Rubinisphaera brasiliensis 3 1 0 4667 Planctomyces 118 genus 53 2 0 4614 2648843 no rank 0 2894 Planctomyces sp. SH-PL62 1636152 species 1 1 1720 0 species Planctomyces sp. SH-PL14 1632864 0 860 1649480 Planctopirus genus 4 2 1 856 0 species 120 Planctopirus limnophila 1 2 1 1258 0 genus 6 Fuerstia 1936111 1252 0 species 1891926 Fuerstia marisgermanicae 1 3 256845 phylum 0 7791 3 1 7791 0 class 57 Lentisphaeria 1313211 1 2 order 707 278082 Victivallales 7734 0 1 1674876 no rank 0 7027 1 Victivallales bacterium CCUG 44730 2094242 species 0 7027 134625 phylum 0 1556 5 1556 0 class 17 Kiritimatiellae 1921781 5 1 1539 0 order 15 1921782 Kiritimatiellales 4 1 3 1 1524 0 6 family Kiritimatiellaceae 1921783 2 1 1518 0 42 genus 1921784 Kiritimatiella 1307763 Kiritimatiella glycovorans species 0 1476 1 1725 clade 1783272 14116240 0 1 659 phylum 132 201174 Actinobacteria 1377904 0 0 2448 84992 Acidimicrobiia class 23 7 1 2425 0 84 order Acidimicrobiales 84993 6 1 1 3 16 family Acidimicrobiaceae 84994 557 0 2 1 541 0 6 genus Acidimicrobium 53634 1 0 535 Acidimicrobium ferrooxidans 53635 species 2 0 1784 2448023 family genus 13 682522 Ilumatobacter 1784 0 1 2 1 0 1771 467094 Ilumatobacter coccineus species class 8118 Actinobacteria 1760 1146823 0 1 603 42 1 71095 0 200 order 85010 Pseudonocardiales 0 70895 2070 Pseudonocardiaceae 1071 family 41 1 151 genus Actinosynnema 40566 7350 0 1 3 species 42197 Actinosynnema pretiosum 3681 0 1 0 3518 Actinosynnema mirum 40567 species 1 3859 0 genus 16 Kutzneria 43356 2 1 species Kutzneria albida 43357 3843 0 1 0 3324 Saccharothrix 2071 4 genus 2 1 0 3320 103731 Saccharothrix espanaensis species 1 Kibdelosporangium 2029 genus 4 0 2771 1 2 1 2767 0 species Kibdelosporangium phytohabitans 860235 6 1 0 9556 Actinoalloteichus 65496 187 genus 1 Actinoalloteichus hoggarensis 1470176 species 0 1732 4091 0 no rank 2644606 2 1 1612551 Actinoalloteichus sp. GBA129-24 species 0 2194 0 1897 Actinoalloteichus sp. AHMU CJ021 2072503 species 1 1 species Actinoalloteichus hymeniacidonis 340345 1367 0 2179 0 species 1612552 Actinoalloteichus sp. ADI127-7 1 20 genus Lentzea 165301 2929 0 1 2 1 species Lentzea guizhouensis 1586287 2909 0 2 1 0 1568 Prauserella 142577 4 genus 1 Prauserella marina 530584 species 0 1564 1 2 genus 22 Saccharopolyspora 1835 2703 0 1 Saccharopolyspora erythraea 1836 species 0 2681 351 genus Amycolatopsis 1813 18676 0 1 7 0 2405 208439 Amycolatopsis japonica species 1 2 0 5143 2618356 no rank 0 2317 Amycolatopsis sp. BJA-103 1911175 species 1 0 2826 Amycolatopsis sp. AA4 1896961 species 1 Amycolatopsis methanolica 1814 species 0 2570 1 species 33910 Amycolatopsis mediterranei 3565 0 1 species Amycolatopsis orientalis 31958 4642 0 1 1 2 1851 Saccharomonospora genus 3 0 1151 1 1148 0 species 1852 Saccharomonospora viridis 1 2 genus 20 674734 Alloactinosynnema 2243 0 1 2636053 no rank 0 2223 1 species Alloactinosynnema sp. L-07 1653480 2223 0 Pseudonocardia 1847 genus 311 0 13694 1 8 0 10707 2619320 no rank 6 1 species 1096856 Pseudonocardia sp. EC080619-01 1829 0 445576 Pseudonocardia sp. AL041005-10 species 0 2032 1 1 0 1562 Pseudonocardia sp. EC080625-04 1096868 species 1 1861 0 species Pseudonocardia sp. HH130630-07 1690815 0 1596 1641402 Pseudonocardia sp. HH130629-09 species 1 1 1688404 Pseudonocardia sp. EC080610-09 species 0 1827 1 2676 0 species 240495 Pseudonocardia dioxanivorans order 4 Glycomycetales 85014 2198 0 1 4 3 1 2194 0 95 family Glycomycetaceae 85034 23 genus 283810 Stackebrandtia 2099 0 1 2 0 2076 283811 Stackebrandtia nassauensis species 1 0 204198 85007 Corynebacteriales 1685 order 163 1 1 4 family 27 Tsukamurellaceae 85028 3854 0 3827 0 91 genus Tsukamurella 2060 3 1 1 species Tsukamurella paurometabola 2061 1570 0 1 species 57704 Tsukamurella tyrosinosolvens 2166 0 697024 no rank 0 736 2 2 1 736 0 genus 14 1847725 Lawsonella 1 0 722 1528099 Lawsonella clevelandensis species 1 9 84 family Gordoniaceae 85026 9742 0 0 9658 Gordonia 2053 227 genus 8 1 no rank 2657482 2846 0 2 1 Gordonia sp. YC-JH1 2059875 species 0 1491 species 337191 Gordonia sp. KTR9 1355 0 1 1 1136941 Gordonia phthalatica species 0 1313 1 1125 0 species 2054 Gordonia bronchialis species Gordonia iterans 1004901 1221 0 1 1 0 1478 2055 Gordonia terrae species species 84595 Gordonia polyisoprenivorans 1448 0 1 1 31 family 341 85025 Nocardiaceae 51718 0 7 1 18885 0 genus 320 1817 Nocardia Nocardia seriolae 37332 species 0 2663 1 Nocardia cyriacigeorgica 135487 species 0 4148 1 0 1875 Nocardia nova 37330 species 1 37326 Nocardia brasiliensis species 0 4353 1 2908 0 species 37329 Nocardia farcinica 1 Nocardia terpenica 455432 species 0 2618 1 0 32492 Rhodococcus 1827 1324 genus 23 1 1 986 0 species 334542 Rhodococcus qingshengii no rank 192944 13617 0 12 1 species 1033922 Rhodococcus sp. WB1 2116 0 1 0 1079 Rhodococcus sp. H-CA8f 1727214 species 1723645 Rhodococcus sp. 008 species 0 809 1 1 Rhodococcus sp. 2G 1570939 species 0 934 1 1564114 Rhodococcus sp. B7740 species 0 1329 species Rhodococcus sp. PBTS 2 1653479 1069 0 1 1 species 1653478 Rhodococcus sp. PBTS 1 1390 0 1 0 1502 1805827 Rhodococcus sp. MTM3W5.2 species 0 608 679318 Rhodococcus sp. WMMA185 species 1 1 883 0 species Rhodococcus sp. YL-1 1045808 829 0 species 1807790 Rhodococcus sp. BH4 1 0 1069 935199 Rhodococcus sp. p52 species 1 species 103816 Rhodococcus pyridinivorans 1181 0 1 1 Rhodococcus erythropolis 1833 species 0 1414 1 1803 0 species 132919 Rhodococcus jostii 1 0 4160 37919 Rhodococcus opacus species 1937 0 species 1830 Rhodococcus ruber 1 43767 Rhodococcus hoagii species 0 1754 1 species 1829 Rhodococcus rhodochrous 1215 0 1 1 species Rhodococcus fascians 1828 1286 0 0 1815 Rhodococcus aetherivorans 191292 species 1 Segniliparaceae 316606 13 family 0 1143 1 3 286801 Segniliparus genus 10 0 1130 1 2 Segniliparus rotundus 286802 species 0 1120 1 1 4 16 family Dietziaceae 85029 2599 0 43 genus 37914 Dietzia 2583 0 1 3 1 no rank 2617939 1371 0 1 species Dietzia sp. oral taxon 368 712270 1371 0 1 1169 0 species 499555 Dietzia timorensis Corynebacteriaceae 1653 family 372 0 61048 1 52 51 1 0 60676 Corynebacterium 1716 genus 1356 1 species 1717 Corynebacterium diphtheriae 1044 0 1 Corynebacterium casei 160386 species 0 769 Corynebacterium epidermidicanis 1050174 species 0 658 1 738 0 species 258224 Corynebacterium resistens 1 1 416 0 species Corynebacterium kutscheri 35755 1426 0 species Corynebacterium efficiens 152794 1 1 161879 Corynebacterium kroppenstedtii species 0 524 species Corynebacterium camporealensis 161896 1130 0 1 1 191610 Corynebacterium atypicum species 0 926 1 species Corynebacterium argentoratense 42817 785 0 0 1233 Corynebacterium glyciniphilum 1404244 species 1 species 146827 Corynebacterium simulans 1625 0 1 1074 0 species 89154 Corynebacterium terpenotabidum 1 1 1193 0 species Corynebacterium aquilae 203263 species 43770 Corynebacterium striatum 2457 0 1 0 822 1719 Corynebacterium pseudotuberculosis species 1 2 0 1641 2624378 no rank 1 847 0 species 1487956 Corynebacterium sp. ATCC 6931 794 0 species 702967 Corynebacterium sp. NML98-0116 1 1721 0 species 225326 Corynebacterium halotolerans 1 161899 Corynebacterium singulare species 0 1065 1 Corynebacterium urealyticum 43771 species 0 1146 1 1 1189 0 species Corynebacterium callunae 1721 Corynebacterium lactis 1231000 species 0 985 1 0 1365 Corynebacterium aurimucosum 169292 species 1 1180 0 species Corynebacterium ulcerans 65058 1 1 species 136857 Corynebacterium testudinoris 1191 0 1 0 1519 Corynebacterium humireducens 1223514 species Corynebacterium imitans 156978 species 0 1423 1 1 Corynebacterium vitaeruminis 38305 species 0 2029 1 1447 0 species 1718 Corynebacterium glutamicum 2124 0 species Corynebacterium frankenforstense 1230998 1 1 108486 Corynebacterium falsenii species 0 1500 species Corynebacterium phocae 161895 932 0 1 1 187491 Corynebacterium glaucum species 0 1265 0 1205 401472 Corynebacterium ureicelerivorans species 1 1 764 0 species 1697 Corynebacterium ammoniagenes 35757 Corynebacterium cystitidis species 0 887 1 1 Corynebacterium flavescens 28028 species 0 733 1 0 754 92706 [Brevibacterium] flavum species 1 Corynebacterium stationis 1705 species 0 938 1 Corynebacterium jeikeium 38289 species 0 2361 1567 0 species 349751 Corynebacterium marinum 1 0 1123 Corynebacterium deserti 1408191 species 1 1 species 1652495 Corynebacterium crudilactis 651 0 species 1072256 Corynebacterium uterequi 1339 0 1 1 0 1689 191493 Corynebacterium sphenisci species 1 species Corynebacterium mustelae 571915 665 0 species Corynebacterium doosanense 1121358 1389 0 1 1290 0 species Corynebacterium variabile 1727 1 1 species Corynebacterium maris 575200 1423 0 1 57 family 274 1762 Mycobacteriaceae 71673 0 1 2 Hoyosella 697025 genus 2 0 777 Hoyosella subflava 639313 species 0 775 1 2589 0 genus 1073531 2 1167 0 species Mycobacterium sinense 875328 1 1 Mycobacterium terrae 1788 species 0 1422 13 22390 0 genus 1866885 0 1772 Mycobacterium chubuense 1800 species 1 0 1732 1797 Mycobacterium thermoresistibile species 1 1795 Mycobacterium neoaurum species 0 1546 1 1 0 2013 1791 Mycobacterium aurum species Mycobacterium vanbaalenii 110539 species 0 1640 1 species 36814 Mycobacterium rhodesiae 1294 0 1 1 0 2029 1772 Mycobacterium smegmatis species 1 1965 0 species Mycobacterium goodii 134601 species 1804 Mycobacterium gilvum 2029 0 1 1514 0 species 758802 Mycobacterium litorale 1 1 0 1758 Mycobacterium vaccae 1810 species 1194 0 species 1766 Mycobacterium fortuitum 1 species Mycobacterium phlei 1771 1904 0 1 5 6123 0 genus 670516 species 1578165 Mycobacterium saopaulense 985 0 1 species 1774 Mycobacterium chelonae 819 0 1 0 2216 Mycobacterium abscessus 36809 species 1 species Mycobacterium stephanolepidis 1520670 1106 0 1 1 83262 Mycobacterium immunogenum species 0 997 1 34 1763 Mycobacterium genus 3332 0 39520 1058 0 species Mycobacterium liflandii 261524 1 species group 77643 2375 0 4 1 618 0 species 78331 Mycobacterium canettii 3 1 0 1757 1773 Mycobacterium tuberculosis 651 species 1 0 534 33894 Mycobacterium africanum biotype 1 Mycobacterium bovis 1765 biotype 0 572 1 0 395 Mycobacterium leprae 1769 species species 482462 Mycobacterium dioxanotrophicus 1791 0 1 1 Mycobacterium kansasii 1768 species 0 1417 8 0 7466 120793 species group 1 species Mycobacterium marseillense 701042 904 0 4 1 2112 0 523 species Mycobacterium intracellulare 1767 0 382 Mycobacterium indicus pranii 35617 subspecies 1 1 1203599 Mycobacterium yongonense subspecies 0 405 0 802 Mycobacterium chimaera 222805 subspecies 1 Mycobacterium avium 1764 species 0 2679 1 Mycobacterium colombiense 339268 species 0 1426 1 0 345 Mycobacterium paraintracellulare 1138383 species 1 13 0 16979 2642494 no rank 1 0 1374 Mycobacterium sp. WY10 1920667 species 1 species Mycobacterium sp. PYR15 2051552 1274 0 species 189918 Mycobacterium sp. KMS 1274 0 1 0 758 1561223 Mycobacterium sp. QIA-37 species 1 species 1682113 Mycobacterium sp. YC-RL4 1597 0 1 species Mycobacterium sp. djl-10 1879023 2330 0 1 1 1227 0 species Mycobacterium sp. VKM Ac-1817D 1273687 1 0 1247 1545728 Mycobacterium sp. EPa45 species 1 species 164756 Mycobacterium sp. MCS 1203 0 species 1570328 Mycobacterium sp. NRRL B-3805 1546 0 1 1 Mycobacterium sp. JLS 164757 species 0 1255 1 0 285 1168287 Mycobacterium sp. MOTT36Y species 1609 0 species Mycobacterium sp. JS623 212767 1 1 species 29311 Mycobacterium haemophilum 797 0 1 species 1809 Mycobacterium ulcerans 1198 0 species Mycobacterium marinum 1781 1350 0 1 1362 0 species group 2249310 1 1362 0 species 722731 Mycobacterium shigaense 1 0 22639 85012 Streptosporangiales order 155 16 1 5 1 10059 0 88 family 2004 Streptosporangiaceae genus 97 2000 Streptosporangium 3972 0 1 2 3875 0 species 2001 Streptosporangium roseum 1 genus 84 Nonomuraea 83681 5999 0 1 2 1 0 5915 2593643 no rank species 1909395 Nonomuraea sp. ATCC 55076 5915 0 1 197 family 83676 Nocardiopsaceae 8947 0 1 7 genus 176 2013 Nocardiopsis 7404 0 1 4 1 53437 Nocardiopsis alba species 0 2012 species Nocardiopsis gilva 280236 2224 0 1 1 2014 Nocardiopsis dassonvillei species 0 2992 2 1 0 1346 Thermobifida 83677 genus 5 1341 0 species 2021 Thermobifida fusca 1 3 1 0 3478 Thermomonosporaceae 2012 62 family 2 1 0 3416 Thermomonospora 2019 57 genus 1 3359 0 species Thermomonospora curvata 2020 147 1 0 151608 Micrococcales 85006 1593 order family 683 Microbacteriaceae 85023 51180 0 1 49 4 genus 518733 Microterricola 1693 0 1 2 1 Microterricola viridarii 412690 species 0 1689 2 1 1948 0 genus 2 33877 Agromyces 0 1946 Agromyces aureus 453304 species 1 1 3 genus 53 Rathayibacter 33886 1623 0 1 33888 Rathayibacter tritici species 0 1142 species 145458 Rathayibacter toxicus 428 0 1 2 1 0 484 1705353 Aurantimicrobium 1 genus Aurantimicrobium minutum 708131 species 0 483 1 1 2 genus 3 1759331 Cnuibacter 1526 0 1 Cnuibacter physcomitrellae 1619308 species 0 1523 1 3 69578 Cryobacterium 57 genus 0 3670 1 0 1873 Cryobacterium arcticum 670052 species 0 1740 2649013 no rank 1 1740 0 species Cryobacterium sp. LW097 1978566 1 4 1 4893 0 130 genus Curtobacterium 2034 species Curtobacterium pusillum 69373 1509 0 1 2 no rank 257496 3254 0 1609 0 species 1905847 Curtobacterium sp. BH-2-1-1 1 1561023 Curtobacterium sp. MR_MD2014 species 0 1645 1 14 1 19674 0 364 genus Microbacterium 33882 1 84292 Microbacterium chocolatum species 0 964 8 11712 0 no rank 2609290 1 0 1267 Microbacterium sp. 1.5R 1916917 species 1512 0 species 2103230 Microbacterium sp. str. 'China' 1 0 1941 1714373 Microbacterium sp. No. 7 species 1 1325 0 species Microbacterium sp. XT11 367477 1 species Microbacterium sp. BH-3-3-3 1906742 1665 0 1 1938334 Microbacterium sp. TPU 3598 species 0 1075 1 1 Microbacterium sp. PAMC 28756 1795053 species 0 1742 1 1185 0 species Microbacterium sp. CGR1 1696072 1 species 36805 Microbacterium aurum 1962 0 1823 0 species 162426 Microbacterium hominis 1 1 0 1215 2033 Microbacterium testaceum species 1634 0 species 300019 Microbacterium paludicola 1 1 6 Clavibacter 1573 genus 290 0 7616 5 1 0 7326 Clavibacter michiganensis 28447 species 1474 1 1874630 Clavibacter capsici subspecies 0 1405 1 Clavibacter insidiosus 33014 subspecies 0 1216 subspecies Clavibacter sepedonicus 31964 1773 0 1 1 0 1458 Clavibacter nebraskensis 31963 subspecies 1 2 genus 95 110932 Leifsonia 3685 0 1 1575 Leifsonia xyli species 0 3590 1 2 Pontimonas 1434032 genus 5 0 317 312 0 species Pontimonas salivibrio 1159327 1 2 1 0 1173 Microcella 337004 genus 3 1 species 279828 Microcella alkaliphila 1170 0 2 535 0 no rank 1655488 2 0 535 1655489 clade 529883 genus 0 535 2 0 258 Candidatus Rhodoluna planktonica 535712 species 1 1 0 277 529884 Rhodoluna lacicola species 2 genus 447237 Frondihabitans 1660 0 1 2 1 no rank 2626248 1658 0 Frondihabitans sp. PAMC 28766 1795630 species 0 1658 1 1 7 family 44 145357 Dermacoccaceae 4940 0 2 1 0 1683 745364 Luteipulveratus genus 25 1 1658 0 species Luteipulveratus mongoliensis 571913 2 1 1569 0 genus 35 57499 Kytococcus 1 species Kytococcus sedentarius 1276 1534 0 1 2 Dermacoccus 57495 24 genus 0 1644 1 Dermacoccus nishinomiyaensis 1274 species 0 1620 3 1 2449 0 4 family 85019 Brevibacteriaceae Brevibacterium 1696 52 genus 0 2445 1 2 1 0 2393 Brevibacterium linens 1703 species 0 7244 85021 Intrasporangiaceae family 110 9 1 Janibacter 53457 genus 18 0 1489 1 2 857417 Janibacter indicus species 0 1471 1 0 1295 53357 Intrasporangium 39 genus 2 1 1 0 1256 53358 Intrasporangium calvum species 2 1 2209 0 genus 28 Arsenicicoccus 267408 1 no rank 2663846 2181 0 1 1658671 Arsenicicoccus sp. oral taxon 190 species 0 2181 2 1 0 2141 265976 Serinicoccus genus 30 1758689 Serinicoccus sp. JLT9 species 0 2111 1 0 1998 145360 Sanguibacteraceae 8 family 3 1 2 1 0 1990 Sanguibacter 60919 79 genus 1 1911 0 species 60920 Sanguibacter keddieii 6 1 7104 0 81 family Cellulomonadaceae 85016 5 1 7023 0 172 genus Cellulomonas 1707 1 1540 0 no rank 2620175 1 Cellulomonas sp. PSBB021 2003551 species 0 1540 1 species Cellulomonas gilvus 11 1518 0 1 1708 Cellulomonas fimi species 0 2019 1 0 1774 Cellulomonas flavigena 1711 species 0 776 Dermatophilaceae 85018 14 family 3 1 2 1 0 762 Dermatophilus 1862 genus 2 0 760 1863 Dermatophilus congolensis species 1 125316 Beutenbergiaceae 7 family 0 1695 1 3 1 2 Beutenbergia 84756 genus 141 0 1688 0 1547 84757 Beutenbergia cavernae species 1 0 95 577468 no rank 2 genus 1 2038 Tropheryma 95 0 1 2 species Tropheryma whipplei 2039 94 0 1 9532 0 family 94 85017 Promicromonosporaceae 9 1 3735 0 genus 75 254250 Isoptericola 3 1 species Isoptericola dokdonensis 372663 1685 0 1 1 Isoptericola variabilis 139208 species 0 1975 3 1 0 3606 Cellulosimicrobium 157920 genus 73 1 1827 0 species 1710 Cellulosimicrobium cellulans 2624466 no rank 0 1706 1 1 1706 0 species 1980001 Cellulosimicrobium sp. TH-20 1 2 genus 32 186188 Xylanimonas 2097 0 0 2065 Xylanimonas cellulosilytica 186189 species 1 0 12341 85020 Dermabacteraceae 82 family 11 1 1 6 231 genus Brachybacterium 43668 10677 0 0 2046 2623841 no rank 1 1 species 1903186 Brachybacterium sp. P6-10-X1 2046 0 Brachybacterium sp. VR2415 2017485 species 0 1900 1 1 species 43669 Brachybacterium faecium 2278 0 Brachybacterium sp. VM2412 2017484 species 0 2058 1 1 species Brachybacterium ginsengisoli 1331682 2164 0 1 2 Devriesea 472568 genus 3 0 618 615 0 species Devriesea agamarum 472569 1 2 1 0 964 36739 Dermabacter 7 genus 1 957 0 species 1630135 Dermabacter vaginalis 0 471 85022 Jonesiaceae family 5 3 1 2 1 466 0 26 genus 43673 Jonesia 0 440 43674 Jonesia denitrificans species 1 1 38 family 2532 1268 Micrococcaceae 50190 0 genus 9 Rothia 32207 3361 0 1 3 1 Rothia mucilaginosa 43675 species 0 2530 1 822 0 species 2047 Rothia dentocariosa 1 4 57493 Kocuria genus 68 0 5231 species Kocuria palustris 71999 1548 0 1 1 Kocuria flava 446860 species 0 1775 0 1840 Kocuria rhizophila 72000 species 1 529 0 genus 1645 1 Renibacterium salmoninarum 1646 species 0 529 1 Pseudarthrobacter 1742993 40 genus 0 5203 1 4 1 0 1554 361575 Pseudarthrobacter phenanthrenivorans species 1 Pseudarthrobacter sulfonivorans 121292 species 0 1711 1 0 1898 Pseudarthrobacter chlorophenolicus 85085 species 2 1 0 1961 Micrococcus 1269 genus 13 species Micrococcus luteus 1270 1948 0 1 1 2078575 genus 0 761 1 1618207 Arthrobacter sp. IHBB 11108 species 0 761 2338 0 genus 17 1742989 Glutamicibacter 2 1 1 256701 Glutamicibacter arilaitensis species 0 2321 1742992 genus 0 1207 1 Paenarthrobacter aurescens 43663 species 0 1207 1 2 1 0 857 1868332 Neomicrococcus genus 12 1 species 556325 Neomicrococcus aestuarii 845 0 genus 19 596707 Sinomonas 1913 0 1 2 Sinomonas atrocyanea 37927 species 0 1894 1 15 1 24297 0 473 genus Arthrobacter 1663 species 656366 Arthrobacter alpinus 2930 0 1 1 species Arthrobacter crystallopoietes 37928 2170 0 12 235627 no rank 0 18724 1 1870 0 species Arthrobacter sp. ERGS1:01 1704044 1260 0 species Arthrobacter sp. ZXY-2 1806905 1 1849032 Arthrobacter sp. U41 species 0 1519 1 species 2079227 Arthrobacter sp. PGP41 1420 0 1 1 0 1347 Arthrobacter sp. PAMC 25486 1494608 species 1 290399 Arthrobacter sp. FB24 species 0 1871 1 species 1652545 Arthrobacter sp. YC-RL1 2228 0 1 2020486 Arthrobacter sp. YN species 0 1389 species 1357915 Arthrobacter sp. QXT-31 1857 0 1 0 1886 Arthrobacter sp. LS16 1690248 species 1 1 0 946 Arthrobacter sp. ATCC 21022 1771959 species species 1118963 Arthrobacter sp. Rue61a 1131 0 1 8 1 6975 0 order 45 1643682 Geodermatophilales 1 7 Geodermatophilaceae 85030 family 205 0 6930 2 1 0 1913 Blastococcus 38501 15 genus 1898 0 species Blastococcus saxobsidens 138336 1 1 2 Geodermatophilus 1860 40 genus 0 2103 1 0 2063 1861 Geodermatophilus obscurus species 0 2709 88138 Modestobacter genus 35 2 1 Modestobacter marinus 477641 species 0 2674 1 order 21 Candidatus Nanopelagicales 2039638 4193 0 1 12 4172 0 family 2162846 11 1 4 Candidatus Nanopelagicus 2039639 genus 7 0 1094 0 524 Candidatus Nanopelagicus abundans 1884916 species 1 1 253 0 species Candidatus Nanopelagicus hibericus 1884915 1 1884634 Candidatus Nanopelagicus limnes species 0 310 622681 Candidatus Planktophila genus 44 0 3078 1 7 1 species 1884914 Candidatus Planktophila dulcis 893 0 1 species 1884904 Candidatus Planktophila sulfonica 322 0 1 0 336 Candidatus Planktophila vernalis 1884907 species 1 species Candidatus Planktophila lacus 1884913 535 0 1 334 0 species 573600 Candidatus Planktophila limnetica 614 0 species 1884905 Candidatus Planktophila versatilis 1 4 1 0 2473 Nakamurellales 1643684 9 order 85031 Nakamurellaceae family 81 0 2464 1 3 0 2383 53460 Nakamurella 35 genus 2 1 1 53461 Nakamurella multipartita species 0 2348 order 41 2037 Actinomycetales 27592 0 1 19 18 1 27551 0 4488 family 2049 Actinomycetaceae 826 0 genus 28263 1 1 28264 Arcanobacterium haemolyticum species 0 826 1069494 Trueperella 35 genus 0 2419 1 2 2384 0 species Trueperella pyogenes 1661 1 1 2 genus 141 Mobiluncus 2050 3053 0 1 species 2051 Mobiluncus curtisii 2912 0 0 14330 1654 Actinomyces genus 424 9 1 579 0 species 1912795 Actinomyces sp. VUL4_3 1 species 1852377 Actinomyces pacaensis 1358 0 1 544580 Actinomyces oris species 0 2007 1 0 2272 111015 Actinomyces radicidentis species 1 0 6272 2609248 no rank 3 1757 0 species 1851395 Actinomyces sp. Chiba101 1 1 0 2716 Actinomyces sp. oral taxon 414 712122 species 1 1799 0 species Actinomyces sp. oral taxon 897 2081702 1418 0 species Actinomyces gaoshouyii 1960083 1 1653174 Actinotignum genus 2 0 1038 1 2 0 1036 Actinotignum schaalii 59505 species 1 genus 2529408 1397 0 1 1 0 1397 52773 Actinomyces meyeri species 0 3952 Catenulisporales 414714 24 order 4 1 3928 0 69 family 414877 Catenulisporaceae 3 1 2 1 0 3859 Catenulispora 414878 11 genus 3848 0 species Catenulispora acidiphila 304895 1 no rank 52018 440 0 1 1 440 0 species 1650658 Actinobacteria bacterium IMCC26256 4 1 834 0 order 78 1643683 Acidothermales 0 756 Acidothermaceae 85032 family 4 3 1 2 1 0 752 Acidothermus 28048 14 genus 1 Acidothermus cellulolyticus 28049 species 0 738 129 order 85008 Micromonosporales 34456 0 1 20 family 506 28056 Micromonosporaceae 34327 0 1 19 6 1 0 15322 1865 Actinoplanes 301 genus 1 species 196914 Actinoplanes friuliensis 2965 0 3 0 9102 2626549 no rank species 2033844 Actinoplanes sp. SE50 2731 0 1 species 649831 Actinoplanes sp. N902-109 3640 0 1 0 2731 134676 Actinoplanes sp. SE50/110 species 1 2954 0 species Actinoplanes missouriensis 1866 1 5 0 genus 84593 Verrucosispora 1 3 1 0 3781 168694 Salinispora 33 genus 1 168695 Salinispora tropica species 0 1882 1 0 1866 Salinispora arenicola 168697 species 4 1 7020 0 132 genus 673534 Plantactinospora 2631981 no rank 0 6888 3 1 species 2108470 Plantactinospora sp. BC1 2234 0 1 2024580 Plantactinospora sp. KBS50 species 0 2387 1 species 2071627 Plantactinospora sp. BB1 2267 0 1873 Micromonospora genus 107 0 7693 1 4 species 47850 Micromonospora aurantiaca 2570 0 1 2617518 no rank 0 2751 1 1 species 648999 Micromonospora sp. L5 2751 0 1 1003110 Verrucosispora maris species 0 2265 34 1 40022 0 order 190 Propionibacteriales 85009 1 13 85015 Nocardioidaceae 343 family 0 14246 2 1 0 2568 2044 Pimelobacter genus 28 2540 0 species 2045 Pimelobacter simplex 1 25 genus Kribbella 182639 2034 0 1 2 1 species 182640 Kribbella flavida 2009 0 4 1 5790 0 94 genus 1839 Nocardioides species 2045452 Nocardioides sp. 78 1655 0 1 1 no rank 2615069 1915 0 1 Nocardioides sp. JS614 196162 species 0 1915 1 2126 0 species Nocardioides dokdonensis 450734 0 1649 2040 Aeromicrobium genus 19 2 1 1 0 1630 Aeromicrobium erythreum 2041 species 2 1 0 1862 Micropruina 116071 genus 8 0 1854 75385 Micropruina glycogenica species 1 1 20 family 423 31957 Propionibacteriaceae 25586 0 1675 0 genus 11 Microlunatus 29404 2 1 1 1664 0 species Microlunatus phosphovorus 29405 2801844 genus 0 1798 1 1 Pseudopropionibacterium propionicum 1750 species 0 1798 1 2 203133 Propionimicrobium genus 1 0 1893 0 1892 2633994 no rank 1 1 Propionimicrobium sp. Marseille-P3275 1871034 species 0 1892 1 2 1912215 Acidipropionibacterium genus 17 0 2787 1 1748 Acidipropionibacterium acidipropionici species 0 2770 4 1 0 4205 Cutibacterium 1912216 49 genus 0 1800 33010 Cutibacterium avidum species 1 1157 0 species Cutibacterium acnes 1747 1 33011 Cutibacterium granulosum species 0 1199 1 1 3 89 genus 1743 Propionibacterium 4738 0 species Propionibacterium freudenreichii 1744 3773 0 1 1 no rank 2608905 876 0 1 0 876 Propionibacterium sp. oral taxon 193 671223 species 1 5 72763 Tessaracoccus genus 129 0 8067 species 1610493 Tessaracoccus flavus 1833 0 1 1 399497 Tessaracoccus flavescens species 0 1631 1 2635419 no rank 0 2130 1 2130 0 species 1909732 Tessaracoccus sp. T2.5-30 1 0 2344 Tessaracoccus aquimaris 1332264 species 4 1 0 2533 622452 Kineosporiales 1 order 0 2532 83778 Kineosporiaceae family 106 3 1 0 2426 Kineococcus 33981 16 genus 2 1 1 2410 0 species Kineococcus radiotolerans 131568 4 1 1526 0 1 order 622450 Actinopolysporales 0 1525 Actinopolysporaceae 622451 19 family 3 1 2 1 1506 0 30 genus Actinopolyspora 1849 0 1476 Actinopolyspora erythraea 414996 species 1 1 82 495 order Streptomycetales 85011 203482 0 Streptomycetaceae 2062 1532 family 0 202987 1 81 75 1 189286 0 7162 genus 1883 Streptomyces 68570 Streptomyces albulus species 0 2365 1 0 2875 Streptomyces vietnamensis 362257 species 1 0 2080 Streptomyces xinghaiensis 1038928 species 1 1 4764 0 species 1888 Streptomyces albus species Streptomyces leeuwenhoekii 1437453 2144 0 1 1 2154 0 species 2049881 Streptomyces sp. XZHG99 1 3209 0 species 379067 Streptomyces bingchenggensis 1 0 2793 1930 Streptomyces scabiei species 1 1902 0 species 1355015 Streptomyces pluripotens species Streptomyces clavuligerus 1901 2042 0 1 1 species 1783515 Streptomyces sp. S10(2016) 2336 0 Streptomyces alboflavus 67267 species 0 2357 1 1 Streptomyces pristinaespiralis 38300 species 0 2545 0 2748 29303 Streptomyces cattleya species 1 0 2287 42684 Streptomyces collinus species 1 species Streptomyces pratensis 1169025 1491 0 1 species 1935 Streptomyces violaceoruber 1780 0 1 24 no rank 2593676 54295 0 2008 0 species 1649184 Streptomyces sp. CFMR 7 1 1 species Streptomyces sp. S8 1837283 1839 0 1262452 Streptomyces sp. 769 species 0 2689 1 1 2869 0 species Streptomyces sp. RTd22 1841249 1 2984 0 species Streptomyces sp. CMB-StM0423 2059884 1 3125 0 species Streptomyces sp. CdTB01 1725411 1 Streptomyces sp. TN58 234612 species 0 1836 1 2276 0 species 1561022 Streptomyces sp. CCM_MD2014 species Streptomyces sp. 3211 1964449 2132 0 1 1 2087 0 species Streptomyces sp. Tue 6075 1661694 1 species 1495638 Streptomyces sp. M56 2948 0 1 0 1760 Streptomyces sp. PAMC 26508 1265601 species 1 862751 Streptomyces sp. SirexAA-E species 0 1789 species Streptomyces sp. fd1-xmd 1812480 2089 0 1 0 2457 206662 Streptomyces sp. FR-008 species 1 0 2087 1849967 Streptomyces sp. SAT1 species 1 0 2230 Streptomyces sp. MOE7 1961713 species 1 1 species Streptomyces sp. CNQ-509 444103 2561 0 1 species 465541 Streptomyces sp. Mg1 2228 0 1 0 2024 Streptomyces sp. Sge12 1972846 species 1 1751294 Streptomyces sp. 4F species 0 1975 1 species Streptomyces sp. CLI2509 1984801 1939 0 2526 0 species Streptomyces sp. P3 2135430 1 1 0 1837 2094021 Streptomyces sp. WAC00288 species 1 0 2206 1914 Streptomyces lavendulae species 1 species 408015 Streptomyces xiamenensis 2159 0 2 0 4014 629295 species group 1 1960 0 species subgroup 1482558 1 species Streptomyces globisporus 1908 1960 0 1 species subgroup 1482596 2054 0 0 2054 Streptomyces griseus 1911 species 1 species 285473 Streptomyces rubrolavendulae 1740 0 1 0 2105 Streptomyces ambofaciens 1889 species 1 species Streptomyces hygroscopicus 1912 5559 0 1 2534 0 species Streptomyces lincolnensis 1915 1 0 2741 Streptomyces puniciscabiei 164348 species 1 Streptomyces malaysiensis 92644 species 0 2713 1 2269 0 species Streptomyces glaucescens 1907 1 Streptomyces violaceusniger 68280 species 0 2677 1 0 2168 1950 Streptomyces peucetius species 1 Streptomyces formicae 1616117 species 0 2451 1 0 1966 33903 Streptomyces avermitilis species 1 1 146923 Streptomyces parvulus species 0 1939 1 0 2611 1926 Streptomyces reticuli species species 553510 Streptomyces gilvosporeus 2603 0 1 1971 Streptomyces noursei species 0 2277 1 1 4048 0 species 54571 Streptomyces venezuelae 4033 0 species Streptomyces pactum 68249 1 1 species 75293 Streptomyces autolyticus 2587 0 68202 Streptomyces fulvissimus species 0 1690 1 1 Streptomyces lydicus 47763 species 0 6510 1 2541 0 species Streptomyces alfalfae 1642299 68192 Streptomyces cyaneogriseus species 0 2124 1 Streptomyces griseochromogenes 68214 species 0 2597 1 0 2236 Streptomyces lividans 1916 species 1 1940 Streptomyces albireticuli species 0 2139 1 1737 0 species Streptomyces niveus 193462 1 0 2505 1969 Streptomyces chartreusis species 1 2 0 4478 1477431 species group 1 species Streptomyces coelicolor 1902 2221 0 species 42239 Streptomyces sampsonii 2257 0 1 12169 0 genus 151 Kitasatospora 2063 5 1 1 0 3340 Kitasatospora setae 2066 species 2519 0 species Kitasatospora aureofaciens 1894 1 species 68173 Kitasatospora albolonga 2245 0 1 1 no rank 2633591 3914 0 species Kitasatospora sp. MMS16-BH015 2018025 3914 0 1 2 no rank 1643818 1670 0 genus 10 147067 Thermobispora 1670 0 1 2 2006 Thermobispora bispora species 0 1660 1 order 99 85013 Frankiales 9054 0 1 7 8955 0 166 family Frankiaceae 74712 6 1 8789 0 189 genus Frankia 1854 5 1 1859 Frankia alni species 0 2120 1 1 species Frankia inefficax 298654 3007 0 1 2252 0 no rank 2632575 1 2252 0 species Frankia sp. EAN1pec 298653 1221 0 species Frankia casuarinae 106370 1 order 151 85004 Bifidobacteriales 347765 0 1 25 1 24 family 9777 31953 Bifidobacteriaceae 347614 0 19 1 333795 0 genus 1363 Bifidobacterium 1678 1 Bifidobacterium adolescentis 1680 species 0 113020 Bifidobacterium longum 216816 species 0 77279 1 0 18049 1686 Bifidobacterium catenulatum species 6852 2 1 1 0 11197 Bifidobacterium kashiwanohense 630129 subspecies 1 25000 0 species 28026 Bifidobacterium pseudocatenulatum Bifidobacterium angulatum 1683 species 0 4574 1 0 27559 1685 Bifidobacterium breve species 1 1 638619 Bifidobacterium actinocoloniiforme species 0 1499 3075 0 species 35760 Bifidobacterium choerinum 1 1 1687 Bifidobacterium coryneforme species 0 1271 1 1691 Bifidobacterium indicum species 0 1462 1 0 1860 1684 Bifidobacterium asteroides species 1689 Bifidobacterium dentium species 0 3395 1 species 33905 Bifidobacterium thermophilum 3164 0 1 0 3069 Bifidobacterium animalis 28025 species 1 1 0 5155 158787 Bifidobacterium scardovii species 38377 0 species 1681 Bifidobacterium bifidum 1 1 Bifidobacterium pseudolongum 1694 species 0 4624 1 genus 196081 796 0 1 796 0 species 78259 Scardovia inopinata 2701 genus 0 1459 1 1 1459 0 species Gardnerella vaginalis 2702 1787 0 8 genus 196082 Parascardovia 2 1 1 1779 0 species Parascardovia denticolens 78258 0 3669 Thermoleophilia 1497346 41 class 5 1 3628 0 order 85 Solirubrobacterales 588673 4 1 family 41 320583 Conexibacteraceae 3543 0 1 3 3502 0 121 genus 191494 Conexibacter 2 1 1 3381 0 species 191495 Conexibacter woesei 1 6 class 27 Rubrobacteria 84995 3708 0 77 order 84996 Rubrobacterales 3681 0 1 5 Rubrobacteraceae 84997 family 14 0 3604 1 4 1 3 Rubrobacter 42255 genus 130 0 3590 1 2159 0 species 49319 Rubrobacter xylanophilus 1301 0 species Rubrobacter radiotolerans 42256 1 no rank 1752188 1405 0 4 1 0 383 1848756 Actinobacteria bacterium IMCC26103 species 1 Actinobacteria bacterium IMCC19121 1848754 species 0 395 1 species Actinobacteria bacterium IMCC25003 1848255 413 0 species 1848755 Actinobacteria bacterium IMCC26077 214 0 1 Coriobacteriia 84998 class 631 0 219719 1 33 1 14 order 441 84999 Coriobacteriales 130007 0 0 26018 1643824 Atopobiaceae 437 family 7 1 1 10 0 genus 1380 Atopobium 423 genus 133925 Olsenella 23749 0 1 4 no rank 2638792 4280 0 1 Olsenella sp. oral taxon 807 712411 species 0 4280 1 1 0 11737 Olsenella sp. Marseille-P2300 1805478 species 1 7309 0 species Olsenella uli 133926 1 0 1822 2767353 genus 1 1822 0 species Atopobium parvulum 1382 1 6 Coriobacteriaceae 84107 family 1564 0 103548 0 3738 33870 Coriobacterium genus 15 2 1 1 species Coriobacterium glomerans 33871 3723 0 no rank 84113 5940 0 1 1 species 1531429 Coriobacteriaceae bacterium 68-1-3 5940 0 1 2 102106 Collinsella 151 genus 0 92306 1 species Collinsella aerofaciens 74426 92155 0 89081 0 order 681 Eggerthellales 1643822 18 1 17 1 88400 0 family 13313 Eggerthellaceae 1643826 1328 0 5 genus Cryptobacterium 84162 2 1 Cryptobacterium curtum 84163 species 0 1323 1 2 1 10724 0 genus 11 Adlercreutzia 447020 1 species 446660 Adlercreutzia equolifaciens 10713 0 3 1 22738 0 genus 183 Gordonibacter 644652 11018 0 species Gordonibacter massiliensis 1841863 1 0 11537 1335613 Gordonibacter urolithinfaciens species 1 2 1 4314 0 genus 7 Denitrobacterium 79603 1 species Denitrobacterium detoxificans 79604 4307 0 0 25448 Eggerthella 84111 genus 247 3 1 1 0 8530 2648737 no rank 502558 Eggerthella sp. YY7918 species 0 8530 1 1 84112 Eggerthella lenta species 0 16671 84108 Slackia genus 20 0 8393 1 2 84110 Slackia heliotrinireducens species 0 8373 1 1 2 genus 11 Phoenicibacter 1981050 2142 0 2131 0 species 1944646 Phoenicibacter massiliensis 1 0 97838 544448 Tenericutes phylum 8 102 1 2 6437 0 no rank 713063 1 0 3244 1911684 Tenericutes bacterium MO-XQ species species Tenericutes bacterium MZ-XQ 1911683 3193 0 1 Mollicutes 31969 class 83 0 88105 1 97 39 1 40287 0 54 order 186328 Entomoplasmatales 27022 0 72 family 2131 Spiroplasmataceae 24 1 23 1 0 26950 2132 Spiroplasma 1182 genus 1 species Spiroplasma helicoides 216938 1117 0 1543 0 species 47834 Spiroplasma kunkelii 1 1 0 1140 2136 Spiroplasma monobiae species 362837 Spiroplasma cantharicola species 0 842 1 1 species 2139 Spiroplasma clarkii 1111 0 216937 Spiroplasma floricola species 0 2073 1 1 species 216934 Spiroplasma corruscae 1065 0 1 0 1021 2144 Spiroplasma mirum species 1 species Spiroplasma litorale 216942 1058 0 1 216936 Spiroplasma diminutum species 0 1525 925 0 species 216933 Spiroplasma chrysopicola 1 1 Spiroplasma taiwanense 2145 species 0 1324 0 1368 Spiroplasma culicicola 216935 species 1 1 865 0 species 216944 Spiroplasma sabaudiense 2 0 2260 2637901 no rank 0 1130 1898044 Spiroplasma sp. TU-14 species 1 species 1914410 Spiroplasma sp. NBRC 100390 1130 0 1 1 315358 Spiroplasma eriocheiris species 0 1237 1 0 943 Spiroplasma apis 2137 species 1 1114980 Spiroplasma atrichopogonis species 0 1052 0 1040 2133 Spiroplasma citri species 1 0 819 216945 Spiroplasma syrphidicola species 1 Spiroplasma turonicum 216946 species 0 1440 1 35 family 33925 Entomoplasmataceae 13211 0 1 14 1 8 genus 633 46239 Mesoplasma 9174 0 1 1774 0 species Mesoplasma lactucae 138853 1 species 219745 Mesoplasma tabanidae 777 0 1 2151 Mesoplasma florum species 0 2305 1 species 216427 Mesoplasma chauliocola 1044 0 1 0 994 Mesoplasma coleopterae 324078 species 0 709 Mesoplasma entomophilum 2149 species 1 0 938 Mesoplasma syrphidae 225999 species 1 4002 0 25 genus Entomoplasma 46238 5 1 1882 0 species Entomoplasma melaleucae 81459 1 1 373 0 species Entomoplasma freundtii 74700 1 species 214888 Entomoplasma luminosum 724 0 species 215578 Entomoplasma somnilux 998 0 1 0 34601 2085 Mycoplasmatales 47 order 44 1 Mycoplasmataceae 2092 87 family 0 34554 1 43 2160 0 genus 2 Ureaplasma 2129 3 1 species 2130 Ureaplasma urealyticum 1120 0 1 1 0 1038 Ureaplasma parvum 134821 species 27 1 21070 0 genus 458 2093 Mycoplasma 2096 Mycoplasma gallisepticum species 0 746 1 1193 0 species 28227 Mycoplasma penetrans 1 6286 0 species group 656088 3 1 2932 0 species 2102 Mycoplasma mycoides 1875 0 species 2105 Mycoplasma leachii 1 1 2095 Mycoplasma capricolum species 0 1479 Mycoplasma pneumoniae 2104 species 0 256 1 1 29554 Mycoplasma canadense species 0 904 Mycoplasma genitalium 2097 species 0 260 1 1 0 124 Mycoplasma haemocanis 136241 species 371 0 species 45362 Mycoplasma bovoculi 1 1 1164 0 species Mycoplasma mobile 2118 1 species 51365 Mycoplasma yeatsii 1185 0 1 Mycoplasma hominis 2098 species 0 1957 1 213 0 species Mycoplasma wenyonii 65123 850 0 species Mycoplasma putrefaciens 2123 1 1 917 0 species 2100 Mycoplasma hyorhinis Mycoplasma haemofelis 29501 species 0 44 1 no rank 2683645 545 0 1 1 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 species 0 545 Mycoplasma suis 57372 species 0 179 1 1 Mycoplasma parvum 984991 species 0 258 274 0 species 2128 Mycoplasma flocculare 1 846 0 species Mycoplasma arthritidis 2111 1 1 species 171632 Mycoplasma ovis 235 0 2099 Mycoplasma hyopneumoniae species 0 519 1 365 0 species Mycoplasma dispar 86660 1 1 0 921 Mycoplasma crocodyli 50052 species 12 genus 2767358 11237 0 1 1118 0 species Mycoplasma agalactiae 2110 591 0 species Mycoplasma pullorum 48003 1 1 Mycoplasma bovigenitalium 2112 species 0 916 1 0 1466 Mycoplasma bovis 28903 species 1 2094 Mycoplasma arginini species 0 1190 species 2113 Mycoplasma californicum 494 0 1 1 species 2107 Mycoplasma pulmonis 842 0 2115 Mycoplasma fermentans species 0 1204 1 1 species 29553 Mycoplasma bovirhinis 679 0 1308 0 species 29555 Mycoplasma canis 1 species 171284 Mycoplasma cynos 943 0 1 486 0 species Mycoplasma synoviae 2109 1 13 1 0 13134 Acholeplasmatales 186329 order 32 12 1 0 13102 2146 Acholeplasmataceae family 118 Candidatus Phytoplasma 33926 89 genus 0 3443 1 6 3 85620 species group 0 1783 species 202462 Maize bushy stunt phytoplasma 571 0 1 1 100379 Onion yellows phytoplasma species 0 671 1 541 0 species 229545 Aster yellows witches'-broom phytoplasma 85630 species group 0 858 1 1 858 0 species 37692 Candidatus Phytoplasma mali species group 85632 713 0 1 1 59748 Candidatus Phytoplasma australiense species 0 713 Acholeplasma 2147 234 genus 0 9541 1 5 1 2118 0 species 35623 Acholeplasma oculi 2148 Acholeplasma laidlawii species 0 2465 1 1 2877 0 species Acholeplasma palmae 38986 1 0 1847 Acholeplasma brassicae 61635 species 3288 0 no rank 2799557 2 1 2 1912503 Candidatus Izimaplasma 6 genus 0 3288 1 no rank 2624196 3282 0 0 3282 Candidatus Izimaplasma sp. HR1 1541959 species 1 1 727 phylum 481 1239 Firmicutes 12471542 0 2 0 2873 33974 no rank 0 2873 Ndongobacter 1930845 genus 53 2 1 1 0 2820 1871025 Ndongobacter massiliensis species no rank 84086 1969 0 1 0 1969 endosymbiont 'TC1' of Trimyema compressum 243899 species 1 Erysipelotrichia 526524 24 class 0 46986 1 11 Erysipelotrichales 526525 order 48 0 46962 1 10 1 9 Erysipelotrichaceae 128827 233 family 0 46914 2 1 0 11455 1729679 Faecalibaculum genus 9 1 1702221 Faecalibaculum rodentium species 0 11446 1 3 94 genus 1647 Erysipelothrix 7279 0 1 0 4175 Erysipelothrix rhusiopathiae 1648 species 1 3010 0 species 1514105 Erysipelothrix larvae 544447 no rank 0 22118 1 1 0 22118 1834207 Erysipelotrichaceae bacterium I46 species 59 genus 191303 Turicibacter 5829 0 1 2 2638206 no rank 0 5770 1 species Turicibacter sp. H121 1712675 5770 0 1 1 225 class 606 186801 Clostridia 11219426 0 0 11151703 186802 Clostridiales order 21645 167 1 0 30297 Eubacteriaceae 186806 family 27 5 1 2 1 0 27266 Eubacterium 1730 genus 1807 0 25459 1736 Eubacterium limosum species 1 3004 0 genus 8 33951 Acetobacterium 2 1 2996 0 species Acetobacterium woodii 33952 1 10 0 239435 538999 no rank 1 4 family 32 Clostridiales Family XIII. Incertae Sedis 543314 9542 0 1 0 4932 [Eubacterium] sulci 143393 species 86331 Mogibacterium genus 17 0 4578 1 2 1 4561 0 species 114527 Mogibacterium diversum 3 1 3354 0 12 family Clostridiales Family XVII. Incertae Sedis 539000 genus 48 73918 Thermaerobacter 3342 0 1 2 3294 0 species 73919 Thermaerobacter marianensis 1 1 0 93469 2717089 genus 1 0 93469 Mordavella sp. Marseille-P3756 2086584 species 0 133070 Intestinimonas 1392389 609 genus 2 1 1 1297617 Intestinimonas butyriciproducens species 0 132461 29 family Symbiobacteriaceae 543349 5829 0 1 3 2733 Symbiobacterium genus 44 0 5800 1 2 1 0 5756 Symbiobacterium thermophilum 2734 species 186804 Peptostreptococcaceae 1110 family 0 121794 1 12 3328 0 genus 4 Acetoanaerobium 186831 2 1 1 0 3324 Acetoanaerobium sticklandii 1511 species 1 2 378 genus Clostridioides 1870884 99288 0 1 species 1496 Clostridioides difficile 98910 0 1 2 3 genus 1849828 Paeniclostridium 6955 0 1 6952 0 species Paeniclostridium sordellii 1505 2 1 4065 0 genus 11 Peptoclostridium 1481960 0 4054 1731 Peptoclostridium acidaminophilum species 1 2 1 4171 0 genus 27 Filifactor 44259 1 species Filifactor alocis 143361 4144 0 2877 0 no rank 1411023 1 1 2877 0 species 2081703 Peptostreptococcaceae bacterium oral taxon 929 Lachnospiraceae 186803 family 2345 0 6177727 1 27 genus 893 1506553 Lachnoclostridium 154207 0 1 4 1 0 57054 2608895 no rank 0 57054 Lachnoclostridium sp. YL32 1834196 species 1 1 19492 0 species Lachnoclostridium phytofermentans 66219 1871021 Lachnoclostridium phocaeense species 0 76768 1 0 171168 572511 Blautia 196 genus 3 1 0 52146 2648079 no rank 1 0 52146 1796616 Blautia sp. YL58 species 1 1 1322 Blautia hansenii species 0 118826 1 genus 2719231 56682 0 1 species [Clostridium] saccharolyticum 84030 56682 0 genus 92 Roseburia 841 738091 0 1 2 1 species 301301 Roseburia hominis 737999 0 1 3 genus 76 Butyrivibrio 830 54662 0 1 0 26385 Butyrivibrio proteoclasticus 43305 species 1 0 28201 Butyrivibrio hungatei 185008 species 1 2 Herbinix 1663717 18 genus 0 13611 1679721 Herbinix luporum species 0 13593 1 344940 0 297 genus Anaerostipes 207244 2 1 1 649756 Anaerostipes hadrus species 0 344643 1 0 238397 28050 genus 1 [Eubacterium] eligens 39485 species 0 238397 0 126149 2719313 genus 1 1 126149 0 species [Clostridium] bolteae 208479 no rank 186928 4051706 0 2 1 34110 0 species 712991 Lachnospiraceae bacterium oral taxon 500 species 39491 [Eubacterium] rectale 4017596 0 1 8514 0 genus 47 2039240 Anaerotignum 2 1 species Anaerotignum propionicum 28446 8467 0 1 2569097 genus 0 207648 1 1 species 39488 [Eubacterium] hallii 207648 0 2 1 9607 0 genus 126 698776 Cellulosilyticum 1 Cellulosilyticum lentocellum 29360 species 0 9481 2304686 family 0 81473 12 2 1 0 6032 Mageeibacillus 1637257 3 genus 1 Mageeibacillus indolicus 884684 species 0 6029 1 no rank 2305130 41825 0 1834198 Ruminiclostridium sp. KB18 species 0 41825 1 7490 0 genus 700 1508657 Ruminiclostridium 2 1 0 6790 [Clostridium] cellulolyticum 1521 species 1 2304691 genus 0 4207 1 1 species 1510 [Clostridium] stercorarium 4207 0 2 1 0 3334 Fastidiosipila 236752 genus 6 species 236753 Fastidiosipila sanguinis 3328 0 1 1 5109 0 genus 2304693 5109 0 species [Clostridium] thermosuccinogenes 84032 1 genus 2304692 13476 0 3 1 species 288965 [Clostridium] clariflavum 5289 0 1 4612 0 species Ruminiclostridium thermocellum 1515 1 0 3575 1677857 Herbivorax saccincola species 1 41 31979 Clostridiaceae family 671 0 280110 1 4 genus 101 Candidatus Arthromitus 49082 7168 0 2638829 no rank 0 7067 3 1 2066 0 species Candidatus Arthromitus sp. SFB-mouse 49118 1 2580 0 species Candidatus Arthromitus sp. SFB-mouse-NL 1508644 0 2421 1041504 Candidatus Arthromitus sp. SFB-rat-Yit species 1 6167 0 11 genus 114627 Alkaliphilus 3 1 1 0 3052 Alkaliphilus oremlandii 461876 species 1 3104 0 species 208226 Alkaliphilus metalliredigens 0 260298 Clostridium 1485 genus 2055 30 1 0 3315 Clostridium aceticum 84022 species 1 1 1548 Clostridium scatologenes species 0 7168 1 0 35901 Clostridium botulinum 1491 species 3996 0 species Clostridium tyrobutyricum 1519 1 1 0 10796 1520 Clostridium beijerinckii species 1 1497 Clostridium formicaceticum species 0 3952 1 10045 0 species 1501 Clostridium pasteurianum 11302 0 species 1502 Clostridium perfringens 1 39179 0 no rank 2614128 2 6123 0 species 755731 Clostridium sp. BNL1100 1 33056 0 species 1042156 Clostridium sp. SY8519 1 Clostridium saccharoperbutylacetonicum 36745 species 0 10434 1 1 species 1493 Clostridium cellulovorans 6701 0 species Clostridium tetani 1513 7938 0 1 1 238834 Clostridium estertheticum species 0 5699 4958 0 species Clostridium autoethanogenum 84023 1 0 4683 Clostridium acetobutylicum 1488 species 1 1 Clostridium taeniosporum 394958 species 0 7001 1 species 1492 Clostridium butyricum 11190 0 46867 Clostridium chauvoei species 0 5223 1 1 Clostridium kluyveri 1534 species 0 8392 0 6159 Clostridium argentinense 29341 species 1 species 169679 Clostridium saccharobutylicum 7117 0 1 1 Clostridium cochlearium 1494 species 0 7453 1 9307 0 species Clostridium baratii 1561 1 0 4840 1538 Clostridium ljungdahlii species 217159 Clostridium carboxidivorans species 0 7251 1 1 species 1216932 Clostridium bornimense 7657 0 1 1542 Clostridium novyi species 0 4569 1 Clostridium sporogenes 1509 species 0 6017 1 0 433 1981033 Mordavella genus 1 2 genus 29 390805 Geosporobacter 5373 0 1 0 5344 1424294 Geosporobacter ferrireducens species 29426 0 149 family 990719 Christensenellaceae 3 1 2 1 29277 0 409 genus 990721 Christensenella 1 Christensenella massiliensis 1805714 species 0 28868 1 3 31984 Heliobacteriaceae 27 family 0 5685 0 5658 2697 Heliobacterium genus 52 2 1 35701 Heliobacterium modesticaldum species 0 5606 1 13 1 4047803 0 1266 family 541000 Ruminococcaceae genus 38 Ethanoligenens 253238 19058 0 1 2 Ethanoligenens harbinense 253239 species 0 19020 1 16174 0 no rank 2305133 1 1 0 16174 1572656 Ruminococcaceae bacterium CPB6 species 1 2 Flavonifractor 946234 genus 184 0 147399 species Flavonifractor plautii 292800 147215 0 1 1 2 Faecalibacterium 216851 976 genus 0 3747823 1 0 3746847 853 Faecalibacterium prausnitzii species 3 1 108751 0 genus 269 Ruminococcus 1263 1 0 20694 Ruminococcus albus 1264 species 1 species Ruminococcus bicirculans 1160721 87788 0 1 no rank 552397 7329 0 7329 0 species [Clostridium] cellulosi 29343 1 genus 1890281 Herbivorax 3 0 1 0 54660 Oscillospiraceae 216572 family 5 3 1 genus 106 459786 Oscillibacter 54655 0 1 2 0 54549 Oscillibacter valericigenes 351091 species 1 29 1 53672 0 family 168 186807 Peptococcaceae 1 0 2096 2282742 genus 2096 0 species 58138 Desulfotomaculum acetoxidans 1 5 1 11483 0 genus 183 36853 Desulfitobacterium 142877 Desulfitobacterium metallireducens species 0 2104 1 species Desulfitobacterium dichloroeliminans 233055 2221 0 1 1 4491 0 species 49338 Desulfitobacterium hafniense 1 2484 0 species Desulfitobacterium dehalogenans 36854 1 genus Dehalobacterium 51514 4997 0 1 2 1 0 4996 Dehalobacterium formicoaceticum 51515 species Candidatus Desulforudis 471826 9 genus 0 2247 1 2 0 2238 471827 Candidatus Desulforudis audaxviator species 1 2 1 0 2835 Syntrophobotulus 51196 genus 2 0 2833 Syntrophobotulus glycolicus 51197 species 1 3004 0 genus 2282740 1 species Desulfotomaculum gibsoniae 102134 3004 0 1 5 1 0 8735 Desulfotomaculum 1562 146 genus 1 species 1565 Desulfotomaculum nigrificans 1715 0 0 1499 Desulfotomaculum reducens 59610 species 1 1 2998 0 species Desulfotomaculum ruminis 1564 1 1833852 Desulfotomaculum ferrireducens species 0 2377 1 4 genus 108 79206 Desulfosporosinus 6659 0 1 2308 0 species Desulfosporosinus orientis 1563 1 species 79209 Desulfosporosinus meridiei 2386 0 1 species Desulfosporosinus acidiphilus 885581 1857 0 0 2044 278993 Thermincola genus 19 2 1 1 2025 0 species 863643 Thermincola potens 56112 Dehalobacter 86 genus 0 9404 1 4 3128 0 species Dehalobacter restrictus 55583 1 0 6190 2635733 no rank 2 1 0 3203 Dehalobacter sp. CF 1131462 species species Dehalobacter sp. DCA 1147129 2987 0 1 5 1 2147 0 5 family 68298 Syntrophomonadaceae 2 1 1229 0 genus 2 Syntrophomonas 862 species 863 Syntrophomonas wolfei 1227 0 1 1 2 genus 8 Syntrophothermus 129001 913 0 1 Syntrophothermus lipocalidus 86170 species 0 905 0 52235 Thermoanaerobacterales 68295 order 81 39 1 1 20 84 family Thermoanaerobacteraceae 186814 25129 0 1352 0 13 genus Thermacetogenium 140458 2 1 1339 0 species Thermacetogenium phaeum 85874 1 2 1 1789 0 genus 1 Caldanaerobacter 249529 1 0 1788 Caldanaerobacter subterraneus 911092 species 3 genus Carboxydothermus 129957 1672 0 1 2 1 Carboxydothermus hydrogenoformans 129958 species 0 1669 1754 Thermoanaerobacter 674 genus 0 16521 1 9 1 0 1889 496866 Thermoanaerobacter pseudethanolicus species 1 Thermoanaerobacter wiegelii 46354 species 0 2383 2636821 no rank 0 3932 2 1 species Thermoanaerobacter sp. X514 399726 1928 0 Thermoanaerobacter sp. X513 573062 species 0 2004 1 29323 Thermoanaerobacter brockii species 0 1889 1 1 0 1984 108150 Thermoanaerobacter italicus species 1 2025 0 species 2325 Thermoanaerobacter kivui 1 1745 0 species Thermoanaerobacter mathranii 583357 4 42857 no rank 0 3711 genus 6 Moorella 44260 2396 0 1 2 1 0 2390 1525 Moorella thermoacetica species 42837 Ammonifex genus 16 0 1315 1 2 1 1299 0 species 42838 Ammonifex degensii family 1 Thermodesulfobiaceae 227387 685 0 1 2 684 0 genus 227388 1 1 684 0 species 184064 Thermodesulfobium narugense 13 1 0 24484 Thermoanaerobacterales Family III. Incertae Sedis 543371 63 family 3 1 0 7310 28895 Thermoanaerobacterium genus 30 1 4191 0 species Thermoanaerobacterium thermosaccharolyticum 1517 1 Thermoanaerobacterium xylanolyticum 29329 species 0 3089 44000 Caldicellulosiruptor 407 genus 0 17111 1 9 species Caldicellulosiruptor bescii 31899 2055 0 1 55205 Caldicellulosiruptor owensensis species 0 2058 1 1 2257 0 species 52765 Caldicellulosiruptor kristjanssonii 1 2017 0 species Caldicellulosiruptor kronotskyensis 413889 1 Caldicellulosiruptor obsidiansis 717609 species 0 2265 1 0 1862 44001 Caldicellulosiruptor saccharolyticus species 1 0 1898 413888 Caldicellulosiruptor hydrothermalis species 1 2292 0 species 52766 Caldicellulosiruptor lactoaceticus 0 1856 Thermoanaerobacterales Family IV. Incertae Sedis 543372 family 10 3 1 2 1 0 1846 Mahella 252965 7 genus 0 1839 252966 Mahella australiensis species 1 1 11 order 14 53433 Halanaerobiales 9912 0 0 4456 Halobacteroidaceae 53434 family 31 4 1 1 28186 genus 0 2075 2075 0 species 28187 Acetohalobium arabaticum 1 genus 2 Halobacteroides 42417 2350 0 1 2 species 42422 Halobacteroides halobius 2348 0 1 5442 0 family 16 972 Halanaerobiaceae 6 1 1 genus 32636 Halothermothrix 1287 0 1 2 1286 0 species Halothermothrix orenii 31909 1 3 1 0 4139 2330 Halanaerobium genus 38 1 species 656519 Halanaerobium hydrogeniformans 1847 0 species 2331 Halanaerobium praevalens 2254 0 1 0 1620 Natranaerobiales 485256 order 4 4 1 0 1616 485255 Natranaerobiaceae family 5 3 1 1 2 Natranaerobius 375928 57 genus 0 1611 species 375929 Natranaerobius thermophilus 1554 0 1 3 order 2770089 3350 0 2 family 2770093 1576 0 Thermosediminibacter 291988 genus 10 0 1576 1 2 1 species 291990 Thermosediminibacter oceani 1566 0 0 1774 2770092 family 1 1 genus 499228 1774 0 Tepidanaerobacter acetatoxydans 499229 species 0 1774 1 0 36421 1737404 Tissierellia class 8 19 1 2 1926 0 no rank 1737407 2 1 0 1926 1582879 Ezakiella genus 19 1907 0 species Ezakiella massiliensis 1852374 1 868 order 1737405 Tissierellales 34487 0 1 16 3 1 0 4659 Gottschalkiaceae 2042895 family 6 1 2 1505664 Gottschalkia 4 genus 0 4653 1 4649 0 species 1556 Gottschalkia acidurici 1 12 family 4869 1570339 Peptoniphilaceae 28960 0 2 1 3582 0 genus 12 150022 Finegoldia 1260 Finegoldia magna species 0 3570 1 1 2 11 genus 1161127 Murdochiella 9847 0 1852373 Murdochiella vaginalis species 0 9836 1 2 1 0 3839 543311 Parvimonas genus 27 1 species Parvimonas micra 33033 3812 0 0 2422 Peptoniphilus 162289 genus 24 2 1 1 0 2398 2637196 no rank 0 2398 Peptoniphilus sp. ING2-D1G 1912856 species 1 0 4401 165779 Anaerococcus 6 genus 3 1 1 species 33034 Anaerococcus prevotii 2277 0 Anaerococcus mediterraneensis 1870984 species 0 2118 1 432 1 992574 0 class 550 Bacilli 91061 6315 order Lactobacillales 186826 472208 0 1 164 1230 0 no rank 263855 1 1 1230 0 species 1993866 Lactobacillales bacterium 26 family 186828 Carnobacteriaceae 12965 0 1 11 Marinilactibacillus 191769 1 genus 0 2584 1 2 1 2632303 no rank 0 2583 0 2583 Marinilactibacillus sp. 15R 1911586 species 1 0 7322 2747 Carnobacterium genus 62 5 1 2 257487 no rank 0 3232 1 208596 Carnobacterium sp. 17-4 species 0 1973 Carnobacterium sp. CP1 1564681 species 0 1259 1 1 0 2519 2751 Carnobacterium maltaromaticum species 1 species Carnobacterium inhibens 147709 1509 0 1 3 14 genus 1470540 Jeotgalibaca 3033 0 0 1537 2621505 no rank 1 1 0 1537 1903686 Jeotgalibaca sp. PTS2502 species 1 0 1482 Jeotgalibaca dankookensis 708126 species 14 family Leuconostocaceae 81850 13470 0 1 17 154 genus Leuconostoc 1243 7633 0 1 9 species Leuconostoc citreum 33964 610 0 1 1 species Leuconostoc kimchii 136609 1042 0 815 0 no rank 2685106 1 1 979982 Leuconostoc sp. C2 species 0 815 0 1420 1244 Leuconostoc gelidum species 1 1 species Leuconostoc garlicum 255248 591 0 species 1245 Leuconostoc mesenteroides 1547 0 1 1 species Leuconostoc lactis 1246 708 0 746 0 species 1252 Leuconostoc carnosum 1 4469 0 genus 72 Weissella 46255 6 1 species 1249 Weissella paramesenteroides 1008 0 1 species 1631871 Weissella jogaejeotgali 717 0 1 1 165096 Weissella koreensis species 0 1033 1 137591 Weissella cibaria species 0 727 912 0 species 759620 Weissella ceti 1 0 1354 46254 genus 1 1 species Oenococcus oeni 1247 1354 0 60888 0 204 family 81852 Enterococcaceae 19 1 genus 2 Tetragenococcus 51668 3216 0 1 2 1 species Tetragenococcus halophilus 51669 3214 0 1350 Enterococcus genus 2728 0 51457 1 12 3 0 3670 2608891 no rank 1476 0 species 2060307 Enterococcus sp. FDAARGOS_375 1 1 2057791 Enterococcus sp. CR-Ec1 species 0 1065 species 2060306 Enterococcus sp. FDAARGOS_163 1129 0 1 1 2142 0 species Enterococcus mundtii 53346 417368 Enterococcus thailandicus species 0 1442 1 1 0 8872 Enterococcus faecalis 1351 species 1 24981 0 species Enterococcus faecium 1352 species 37734 Enterococcus casseliflavus 1041 0 1 1 2276 0 species Enterococcus hirae 1354 1 2326 0 species Enterococcus durans 53345 1979 0 species 2005703 Enterococcus wangshanyuanii 1 1 3 2737 Vagococcus 147 genus 0 3915 1462 0 species 633807 Vagococcus penaei 1 1 0 2306 519472 Vagococcus teuberi species genus 33969 2096 0 1 1 species Melissococcus plutonius 33970 2096 0 8 1 9040 0 family 23 186827 Aerococcaceae 9017 0 genus 169 1375 Aerococcus 7 1 1377 Aerococcus viridans species 0 1261 1 species Aerococcus christensenii 87541 1588 0 1 0 1795 Aerococcus urinaeequi 51665 species 1 1 1335 0 species Aerococcus urinaehominis 128944 1 0 1634 Aerococcus sanguinicola 119206 species species Aerococcus urinae 1376 1235 0 1 1 49 1300 Streptococcaceae 4443 family 0 276598 1 5 Lactococcus 1357 37 genus 0 12132 1515 0 species Lactococcus piscium 1364 1 1 6909 0 species Lactococcus lactis 1358 1 2275 0 species 1363 Lactococcus garvieae 1 1396 0 species Lactococcus raffinolactis 1366 genus 6106 1301 Streptococcus 260023 0 1 43 species Streptococcus parasanguinis 1318 5133 0 1 1 Streptococcus mutans 1309 species 0 1696 1 0 5618 197614 Streptococcus pasteurianus species 1 0 9050 Streptococcus infantarius 102684 species 1 species 1314 Streptococcus pyogenes 3278 0 Streptococcus uberis 1349 species 0 1153 1 0 23743 2608887 no rank 7 1 Streptococcus sp. oral taxon 431 712633 species 0 1429 1 species 1759399 Streptococcus sp. A12 2871 0 0 6009 Streptococcus sp. I-P16 1156433 species 1 species Streptococcus sp. 'group B' 1319 1034 0 1 1 Streptococcus sp. NPS 308 1902136 species 0 985 1 5899 0 species Streptococcus sp. I-G2 1156431 Streptococcus sp. FDAARGOS_192 1839799 species 0 5516 1 species 1313 Streptococcus pneumoniae 2755 0 1 45634 Streptococcus cristatus species 0 1465 1 2250 0 species 1346 Streptococcus iniae 1 400065 Streptococcus merionis species 0 1062 1 Streptococcus suis 1307 species 0 29107 1 1 792 0 species Streptococcus himalayensis 1888195 0 3426 1335 Streptococcus equinus species 1 1 0 2850 1348 Streptococcus parauberis species 0 19780 Streptococcus salivarius 1304 species 1 0 1307 1825069 Streptococcus marmotae species 1 species group 671232 57903 0 3 Streptococcus intermedius 1338 species 0 2214 1 0 16874 Streptococcus constellatus 76860 species 1 38815 0 species 1328 Streptococcus anginosus 1 1 3063 0 species 315405 Streptococcus gallolyticus 0 7947 Streptococcus lutetiensis 150055 species 1 1 3524 0 species 1308 Streptococcus thermophilus 1 species 1814128 Streptococcus halotolerans 1288 0 0 1538 Streptococcus pantholopis 1811193 species 1 1 Streptococcus acidominimus 1326 species 0 1996 0 3597 Streptococcus gordonii 1302 species 1 119603 species group 0 3548 2 1323 0 species Streptococcus dysgalactiae 1334 1 2225 0 species Streptococcus equi 1336 1 1244 0 species 59310 Streptococcus macedonicus 1 2059 0 species Streptococcus sanguinis 1305 1 1 0 41796 Streptococcus agalactiae 1311 species 1 0 3271 28037 Streptococcus mitis species 1 257758 Streptococcus pseudopneumoniae species 0 1199 1 1207 0 species Streptococcus pluranimalium 82348 1 species Streptococcus oralis 1303 4272 0 58 1 91702 0 543 family 33958 Lactobacillaceae 2 2740 0 genus 2767885 1666 0 species Lactobacillus sakei 1599 1 1 28038 Lactobacillus curvatus species 0 1074 3 5544 0 genus 2759736 1 0 1792 Lactobacillus paracasei 1597 species 0 2261 Lactobacillus casei 1582 species 1 1 species 47715 Lactobacillus rhamnosus 1491 0 genus 2767887 11521 0 4 1 species 89059 Lactobacillus acidipiscis 1132 0 1623 Lactobacillus ruminis species 0 3291 1 1 1601 Lactobacillus agilis species 0 2308 4790 0 species 1624 Lactobacillus salivarius 1 0 1100 2767892 genus 1 1 species 240427 Lactobacillus paracollinoides 1100 0 2 1835 0 genus 2767881 872 0 species Lactobacillus lindneri 53444 1 1 1625 Lactobacillus sanfranciscensis species 0 963 1 0 4172 2767876 genus 0 4172 1603 Lactobacillus amylophilus species 1 3 0 2435 2767886 genus Lactobacillus zymae 267363 species 0 682 1 1 species 1580 Lactobacillus brevis 1151 0 0 602 Lactobacillus koreensis 637971 species 1 6 9675 0 genus 2767879 1 species 1612 Lactobacillus farciminis 1557 0 1 1602 0 species 1074467 Lactobacillus heilongjiangensis 392416 Lactobacillus crustorum species 0 1741 1 1 species 1007676 Lactobacillus ginsenosidimutans 1485 0 1932 0 species Lactobacillus allii 1847728 1 1358 0 species 1602 Lactobacillus alimentarius 1 3 5097 0 genus 2742598 1 0 1310 Lactobacillus mucosae 97478 species 1 Lactobacillus reuteri 1598 species 0 2308 species 1613 Lactobacillus fermentum 1479 0 1 1 2767890 genus 0 883 0 883 1193095 Lactobacillus hokkaidonensis species 1 0 3072 2767893 genus 3 species Lactobacillus parabuchneri 152331 971 0 1 1 0 981 1138822 Lactobacillus curieae species 1120 0 species 1581 Lactobacillus buchneri 1 genus 2767889 2001 0 2 1 375175 Lactobacillus backii species 0 1006 0 995 Lactobacillus coryniformis 1610 species 1 6 1 7736 0 genus 34 1253 Pediococcus 1 187452 Pediococcus claussenii species 0 1701 0 1229 51663 Pediococcus damnosus species 1 1 species Pediococcus inopinatus 114090 679 0 1 1664 0 species group 1670797 Pediococcus acidilactici 1254 species 0 1664 1 1255 Pediococcus pentosaceus species 0 2429 1 1578 Lactobacillus 2090 genus 0 28280 1 16 species 1587 Lactobacillus helveticus 2231 0 1 1 0 3963 33959 Lactobacillus johnsonii species 1 0 1663 1579 Lactobacillus acidophilus species 0 1475 52242 Lactobacillus gallinarum species 1 species Lactobacillus acetotolerans 1600 938 0 1 1 83683 Lactobacillus amylolyticus species 0 904 1 1596 Lactobacillus gasseri species 0 2877 1 Lactobacillus jensenii 109790 species 0 1296 1 3479 0 species Lactobacillus amylovorus 1604 0 3274 Lactobacillus delbrueckii 1584 species 1 1 Lactobacillus kefiranofaciens 267818 species 0 851 2620435 no rank 0 3239 4 1 806 0 species Lactobacillus sp. CBA3606 2099789 0 816 2099788 Lactobacillus sp. CBA3605 species 1 1048 0 species Lactobacillus sp. wkB8 1545702 1 1 0 569 Lactobacillus sp. D1501 2108362 species 3 0 3616 2767842 genus 60520 Lactobacillus paraplantarum species 0 494 1 species Lactobacillus plantarum 1590 2010 0 1 species 1589 Lactobacillus pentosus 1112 0 1 1 1452 0 genus 2767877 1 species Lactobacillus kunkeei 148814 1452 0 267 1 0 519816 Bacillales 1385 1226 order 228255 0 639 family Bacillaceae 186817 119 1 1 genus 1055323 1641 0 species 33936 Aeribacillus pallidus 1641 0 1 2 0 4219 2675230 genus 1 species Bacillus oceanisediminis 665099 2227 0 Bacillus kochii 859143 species 0 1992 1 1 3 Fictibacillus 1329200 52 genus 0 4697 2384 0 species Fictibacillus phosphorivorans 1221500 1 1 Fictibacillus arsenicus 255247 species 0 2261 5 genus 2675234 9132 0 0 2590 Bacillus krulwichiae 199441 species 1 1 0 2292 79880 Bacillus clausii species 1466 0 species Bacillus lehensis 300825 1 1 1739 0 species 79885 Bacillus pseudofirmus Bacillus halodurans 86665 species 0 1045 1 2 2675229 genus 0 4472 1 0 2785 1478 Bacillus simplex species species Bacillus muralis 264697 1687 0 1 5 1 0 11264 400634 Lysinibacillus genus 161 1 28031 Lysinibacillus fusiformis species 0 1584 0 2074 1145276 Lysinibacillus varians species 1 1 species Lysinibacillus sphaericus 1421 5472 0 1 no rank 2636778 1973 0 species 2072025 Lysinibacillus sp. YS11 1973 0 1 1 6 150247 Anoxybacillus 42 genus 0 7676 2639704 no rank 0 3245 2 species 1490052 Anoxybacillus sp. B2M1 1543 0 1 1 species 1490057 Anoxybacillus sp. B7M1 1702 0 1 0 1309 198467 Anoxybacillus gonensis species 1722 0 species Anoxybacillus flavithermus 33934 1 1 1358 0 species Anoxybacillus amylolyticus 294699 18 genus Terribacillus 459532 1867 0 1 2 Terribacillus aidingensis 586416 species 0 1849 1 140727 0 genus 5928 Bacillus 1386 58 1 1 0 2830 561879 Bacillus safensis species 1 1385 0 species Bacillus smithii 1479 0 2142 Bacillus weihaiensis 1547283 species 1 1 Bacillus aryabhattai 412384 species 0 2220 1408 0 species 1178537 Bacillus xiamenensis 1 1 0 2140 Bacillus cohnii 33932 species 19 no rank 185979 18181 0 0 1941 1565991 Bacillus sp. X1(2014) species 1 1 1774743 Bacillus sp. SDLI1 species 0 990 1 0 1142 Bacillus sp. 1s-1 2026248 species 1 367 0 species 1574141 Bacillus sp. YP1 0 235 1409 Bacillus sp. (in: Bacteria) species 1 species Bacillus sp. SJ-10 563169 650 0 1 species 1837130 Bacillus sp. FJAT-14266 1175 0 1 1 0 1486 98228 Bacillus sp. OxB-1 species 1 species Bacillus sp. WP8 756828 1424 0 557 0 species 2009331 Bacillus sp. MD-5 1 1827146 Bacillus sp. IHB B 7164 species 0 1939 1 1 0 293 1570330 Bacillus sp. BH072 species 1 0 622 1446792 Bacillus sp. Pc3 species 1 0 492 1127744 Bacillus sp. JS species 666686 Bacillus sp. 1NLA3E species 0 2545 1 0 639 1941347 Bacillus sp. 275 species 1 1 0 353 Bacillus sp. LM 4-2 1628753 species 1 0 186 Bacillus sp. Lzh-5 2049935 species 1 species 1856406 Bacillus sp. H15-1 1145 0 23512 0 species group 653685 9 355 0 species Bacillus vallismortis 72361 1 species 1452 Bacillus atrophaeus 1893 0 1 8349 0 species 1423 Bacillus subtilis 1 119858 Bacillus sonorensis species 0 1971 1 Bacillus licheniformis 1402 species 0 1748 1 7229 0 species subgroup 1938374 3 3420 0 species 1390 Bacillus amyloliquefaciens 1 0 2882 Bacillus velezensis 492670 species 1 0 927 659243 Bacillus siamensis species 1 1 1967 0 species 1648923 Bacillus paralicheniformis 1 species Bacillus infantis 324767 1855 0 2735 0 species Bacillus endophyticus 135735 1 1 6251 0 species Bacillus pumilus 1408 species Bacillus beveridgei 632773 1770 0 1 1 5364 0 species 1404 Bacillus megaterium Bacillus glycinifermentans 1664069 species 0 2222 1 1 0 4683 1398 Bacillus coagulans species 0 46569 86661 species group 10 1 species 658666 Bacillus bombysepticus 1478 0 1 5895 0 species 1405 Bacillus mycoides 1 2174 0 species 580165 Bacillus cytotoxicus 1 species 155322 Bacillus toyonensis 1371 0 1 1298 0 species Bacillus anthracis 1392 1396 Bacillus cereus species 0 14807 1 species 1428 Bacillus thuringiensis 14831 0 1 3 2750818 no rank 0 4715 species Bacillus sp. FDAARGOS_235 1839798 1970 0 1 1 species 1892404 Bacillus sp. ABP14 1356 0 species Bacillus sp. HBCD-sjtu 2053832 1389 0 1 0 2342 Bacillus cellulosilyticus 1413 species 1 Bacillus horikoshii 79883 species 0 1921 1 1557 0 species 1471 Bacillus methanolicus 1 1792192 species group 0 1716 1 species 293387 Bacillus altitudinis 1716 0 1 1 species 79881 Bacillus gibsonii 266 0 1 86664 Bacillus flexus species 0 1730 1 1906945 genus 0 1619 1619 0 species Parageobacillus thermoglucosidasius 1426 1 34 genus 84406 Virgibacillus 10717 0 1 7 0 3283 2620237 no rank 2 0 2041 Virgibacillus sp. 6R 1911587 species 1 1242 0 species Virgibacillus sp. SK37 403957 1 1 Virgibacillus halodenitrificans 1482 species 0 1887 species Virgibacillus pantothenticus 1473 1806 0 1 1 species Virgibacillus phasianinus 2017483 1782 0 0 1925 163877 Virgibacillus necropolis species 1 2 1 0 3488 182709 Oceanobacillus 6 genus 1 182710 Oceanobacillus iheyensis species 0 3482 0 1437 175304 Lentibacillus 1 genus 2 1 1 species Lentibacillus amyloliquefaciens 1472767 1436 0 3 1 0 2707 45667 Halobacillus 2 genus 1 1456 0 species Halobacillus halophilus 1570 1 Halobacillus mangrovi 402384 species 0 1249 1 2 5 genus 351195 Salimicrobium 1732 0 1727 0 species Salimicrobium jeotgali 1230341 1 17468 0 genus 1255 Geobacillus 129337 15 1 1 0 1252 Geobacillus subterraneus 129338 species Geobacillus genomosp. 3 1921421 species 0 1322 1 1 0 1624 1422 Geobacillus stearothermophilus species no rank 2642459 5515 0 6 1 0 849 691437 Geobacillus sp. C56-T3 species species 544556 Geobacillus sp. Y412MC61 643 0 1 1 0 1316 471223 Geobacillus sp. WCH70 species 0 1532 Geobacillus sp. Y4.1MC1 581103 species 1 Geobacillus sp. GHH01 1233873 species 0 604 1 species 550542 Geobacillus sp. Y412MC52 571 0 1 4 species group 1505648 4862 0 1 0 515 Geobacillus kaustophilus 1462 species 1 0 1140 169283 Geobacillus lituanicus species Geobacillus thermoleovorans 33941 species 0 2129 1 1 0 1078 33938 Geobacillus thermocatenulatus species species 33940 Geobacillus thermodenitrificans 1638 0 1 genus 1 29331 Amphibacillus 2753 0 1 2 2752 0 species Amphibacillus xylanus 1449 1 9 1 0 12391 Alicyclobacillaceae 186823 76 family 0 2532 Kyrpidia 1129704 genus 97 3 1 1 Kyrpidia tusciae 33943 species 0 1336 1 Kyrpidia sp. EA-1 2055160 species 0 1099 1 2 genus 51 29330 Alicyclobacillus 3663 0 0 3612 Alicyclobacillus acidocaldarius 405212 species 1 3 1 0 6120 432330 Tumebacillus genus 67 1 species 1214604 Tumebacillus algifaecis 1945 0 1 species 1903704 Tumebacillus avium 4108 0 1 9 186820 Listeriaceae 55 family 0 14440 6 1 0 12947 1637 Listeria 192 genus species 1643 Listeria welshimeri 1873 0 1 2526 0 species Listeria ivanovii 1638 1 1 1653 0 species Listeria innocua 1642 1 0 1277 Listeria seeligeri 1640 species Listeria monocytogenes 1639 species 0 5426 1 1 2 3 genus Brochothrix 2755 1438 0 1 Brochothrix thermosphacta 2756 species 0 1435 0 9221 539002 no rank 9 2 2524 0 no rank 539738 2 1 2524 0 genus 3 Gemella 1378 2521 0 no rank 2624949 1 Gemella sp. oral taxon 928 1785995 species 0 2521 1 7 no rank 539742 6697 0 1 7 Exiguobacterium 33986 genus 271 0 6697 species 132920 Exiguobacterium antarcticum 1053 0 1 4356 0 no rank 2644629 4 1 0 1022 360911 Exiguobacterium sp. AT1b species 1 955 0 species Exiguobacterium sp. MH3 1399115 1 0 1228 1224749 Exiguobacterium sp. ZWU0009 species 1 1151 0 species Exiguobacterium sp. U13-1 1849031 1 species 332410 Exiguobacterium sibiricum 1017 0 90964 Staphylococcaceae 1926 family 0 75947 1 42 Auricoccucs 2005363 genus 19 0 1646 1 2 1 0 1627 Auricoccus indicus 1849491 species 2 1 0 1839 Salinicoccus 45669 19 genus 1 0 1820 Salinicoccus halodurans 407035 species 1 4 Macrococcus 69965 genus 22 0 5797 1 1842 0 no rank 2619255 1898474 Macrococcus sp. IME1552 species 0 1842 1 1763 0 species Macrococcus canis 1855823 1 1 2170 0 species 69966 Macrococcus caseolyticus 1 33 1417 genus Staphylococcus 1279 64739 0 1 species Staphylococcus lutrae 155085 725 0 species 985762 Staphylococcus agnetis 1360 0 1 1 Staphylococcus pseudintermedius 283734 species 0 1882 Staphylococcus simiae 308354 species 0 2762 1 1 species 1294 Staphylococcus muscae 1056 0 species 45972 Staphylococcus pasteuri 4156 0 1 0 1674 214473 Staphylococcus nepalensis species 1 1552 0 species 1295 Staphylococcus schleiferi 1 species 29388 Staphylococcus capitis 1885 0 1 1 0 1371 Staphylococcus felis 46127 species 1282 Staphylococcus epidermidis species 0 3357 1 species Staphylococcus carnosus 1281 1631 0 1 1 70255 Staphylococcus condimenti species 0 1829 1 0 1663 1292 Staphylococcus warneri species 1 1766 0 species 29384 Staphylococcus kloosii 1 species Staphylococcus pettenkoferi 170573 955 0 species 643214 Staphylococcus stepanovicii 1815 0 1 1 species Staphylococcus hominis 1290 1737 0 1 species 28035 Staphylococcus lugdunensis 1825 0 1280 Staphylococcus aureus species 0 6036 1 1 species Staphylococcus succinus 61015 1358 0 0 2241 Staphylococcus saprophyticus 29385 species 1 0 1886 246432 Staphylococcus equorum species 1 1 Staphylococcus simulans 1286 species 0 1713 0 2546 Staphylococcus sciuri 1296 species 1 0 2329 Staphylococcus haemolyticus 1283 species 1 0 1737 29382 Staphylococcus cohnii species 1 0 1599 70258 Staphylococcus piscifermentans species 1 0 1727 Staphylococcus argenteus 985002 species 1 no rank 91994 1422 0 1 1422 0 species 1715860 Staphylococcus sp. AntiMn-1 1 1 1288 Staphylococcus xylosus species 0 2714 1284 Staphylococcus hyicus species 0 1013 1 1 2 family 4 Sporolactobacillaceae 186821 2067 0 663587 no rank 0 2063 1 species 85683 [Bacillus] selenitireducens 2063 0 1 Thermoactinomycetaceae 186824 10 family 0 2445 1 4 1 87 0 genus Laceyella 292635 1 2 76 genus Novibacillus 1677050 2348 0 1 species Novibacillus thermophilus 1471761 2272 0 26 1 33542 0 135 family 186818 Planococcaceae 239 genus 1372 Planococcus 14526 0 1 12 966 0 species Planococcus donghaensis 414778 1 1 0 1171 1598147 Planococcus faecalis species species 1302659 Planococcus sp. L10.15 826 0 1 1 0 1113 Planococcus plakortidis 1038856 species 1 0 3089 Planococcus maritimus 192421 species 1 species Planococcus kocurii 1374 1010 0 0 1044 Planococcus halocryophilus 1215089 species 1 2662419 no rank 0 2619 2 1 1405 0 species Planococcus sp. MB-3u-03 2058136 1214 0 species 1526927 Planococcus sp. PAMC 21323 1 species Planococcus antarcticus 161360 1209 0 1 0 1240 Planococcus rifietoensis 200991 species 1 1 2 Jeotgalibacillus 157226 genus 3 0 2042 1 species Jeotgalibacillus malaysiensis 1508404 2039 0 1 genus 648802 1528 0 Rummeliibacillus stabekisii 241244 species 0 1528 1 3 1 4891 0 33 genus 648800 Solibacillus 1 2919 0 species 76853 Solibacillus silvestris 1 2637870 no rank 0 1939 1939 0 species Solibacillus sp. R5-41 2048654 1 1569 Sporosarcina genus 76 0 8538 1 5 2 no rank 2647733 2871 0 1 species 1930764 Sporosarcina sp. P33 1521 0 Sporosarcina sp. P37 1930546 species 0 1350 1 0 1266 1476 Sporosarcina psychrophila species 1 1 species Sporosarcina ureae 1571 4325 0 1649 Kurthia 2 genus 0 1882 1 2 1 2644826 no rank 0 1880 1 0 1880 1750719 Kurthia sp. 11kri321 species Paenibacillaceae 186822 354 family 0 140282 1 46 36 1 0 122506 Paenibacillus 44249 1295 genus species Paenibacillus ihbetae 1870820 3146 0 1 1 3170 0 species 1126833 Paenibacillus beijingensis 1 1763538 Paenibacillus crassostreae species 0 1768 41712 0 no rank 185978 13 1 1536775 Paenibacillus sp. FSL H7-0737 species 0 2217 1 species Paenibacillus sp. Y412MC10 481743 2797 0 species Paenibacillus sp. FSL H7-0357 1536774 3351 0 1 species 1536770 Paenibacillus sp. FSL R5-0345 2146 0 1 1 4432 0 species 1536773 Paenibacillus sp. FSL R7-0331 4563 0 species 1536769 Paenibacillus sp. FSL P4-0081 1 0 5840 1536771 Paenibacillus sp. FSL R5-0912 species 1 1885 0 species 2069255 Paenibacillus sp. lzh-N1 1 0 1735 Paenibacillus sp. IHBB 10380 1566358 species 1 0 3023 Paenibacillus sp. 32O-W 1695218 species 1 1 0 4337 1536772 Paenibacillus sp. FSL R7-0273 species 1 species 324057 Paenibacillus sp. JDR-2 3032 0 1 species Paenibacillus sp. BIHB4019 1870819 2354 0 1 Paenibacillus graminis 189425 species 0 4800 1 4869 0 species Paenibacillus borealis 160799 1 species Paenibacillus kribbensis 172713 2199 0 1 4611 0 species group 2044880 1 species Paenibacillus riograndensis 483937 4611 0 2206 0 species Paenibacillus odorifer 189426 1 1 0 1998 1178515 Paenibacillus swuensis species 0 6179 61624 Paenibacillus mucilaginosus species 1 1 1464 Paenibacillus larvae species 0 3389 1 44251 Paenibacillus durus species 0 5055 Paenibacillus terrae 159743 species 0 2146 1 4030 0 species 1462996 Paenibacillus yonginensis 1 species 169760 Paenibacillus stellifer 5033 0 1 1 0 4350 Paenibacillus donghaensis 414771 species 1 2262 0 species Paenibacillus naphthalenovorans 162209 7347 0 species Paenibacillus polymyxa 1406 1 0 3500 Paenibacillus bovis 1616788 species 1 species Paenibacillus sabinae 365617 3166 0 1 59893 Paenibacillus peoriae species 0 1930 1 1 species Paenibacillus xylanexedens 528191 2345 0 0 8122 55080 Brevibacillus 62 genus 4 1 1 1735 0 species Brevibacillus formosus 54913 1 0 3155 Brevibacillus laterosporus 1465 species 1 species Brevibacillus brevis 1393 3170 0 no rank 85151 4249 0 3 3 1 4249 0 24 genus Aneurinibacillus 55079 no rank 2642329 2205 0 1 1 1450761 Aneurinibacillus sp. XH2 species 0 2205 1 2020 0 species 1500254 Aneurinibacillus soli 1 2 76632 Thermobacillus 79 genus 0 5051 377615 Thermobacillus composti species 0 4972 1 31 1 168016 0 118 class 909932 Negativicutes 1 5 68 order 1843488 Acidaminococcales 41102 0 family 161 Acidaminococcaceae 909930 41034 0 1 4 Acidaminococcus 904 genus 202 0 40873 1 3 1 0 15609 905 Acidaminococcus fermentans species 1 Acidaminococcus intestini 187327 species 0 25062 1 11 order 1425 1843489 Veillonellales 32507 0 1 10 31977 Veillonellaceae 1497 family 0 31082 3 1 9245 0 41 genus 29465 Veillonella 0 4367 248315 Veillonella rodentium species 1 0 4837 Veillonella parvula 29466 species 1 Megasphaera 906 400 genus 0 14281 1 2 1 Megasphaera elsdenii 907 species 0 13881 Negativicoccus 909928 genus 15 0 2990 1 2 1 2975 0 species 1702287 Negativicoccus massiliensis genus 37 39948 Dialister 3069 0 1 2 1 3032 0 species Dialister pneumosintes 39950 94289 0 161 order 909929 Selenomonadales 14 1 7319 0 17 family Sporomusaceae 1843490 4 1 0 7302 365348 Pelosinus genus 22 3 1 0 3325 2629460 no rank 1 1 484770 Pelosinus sp. UFO1 species 0 3325 1 species Pelosinus fermentans 365349 3955 0 Selenomonadaceae 1843491 164 family 0 86809 1 9 49045 0 genus 4 Megamonas 158846 2 1 158847 Megamonas hypermegale species 0 49041 1 970 Selenomonas 382 genus 0 37600 1 6 1 971 Selenomonas ruminantium species 0 12438 3 0 17155 2637378 no rank Selenomonas sp. oral taxon 478 712538 species 0 5953 1 0 5876 713030 Selenomonas sp. oral taxon 136 species 1 1 0 5326 Selenomonas sp. oral taxon 920 1884263 species 0 7625 69823 Selenomonas sputigena species 1 5 1 2796 0 24 class Limnochordia 1676648 4 1 0 2772 Limnochordales 1676649 order 70 Limnochordaceae 1676650 31 family 0 2702 1 3 0 2671 1676651 Limnochorda genus 30 2 1 species Limnochorda pilosa 1555112 2641 0 1 67819 phylum 0 1142 5 class 8 Fimbriimonadia 1663419 1142 0 1 5 1 4 3 order 1663425 Fimbriimonadales 1134 0 3 1 0 1131 Fimbriimonadaceae 1663426 family 20 0 1111 Fimbriimonas 1005038 7 genus 2 1 species Fimbriimonas ginsengisoli 1005039 1104 0 1 146 1798711 clade 0 93420 39 phylum 1117 Cyanobacteria 93420 0 1 146 56 1 0 40665 Synechococcales 1890424 402 order 0 401 1890436 Pseudanabaenaceae 1 family 3 1 400 0 genus 6 1152 Pseudanabaena 2 1 no rank 2593292 394 0 1 0 394 82654 Pseudanabaena sp. PCC 7367 species 1 1570 0 family 1890428 4 4 1 0 1570 1142 Synechocystis 34 genus 2640012 no rank 0 1536 3 1 499 0 species Synechocystis sp. PCC 6803 1148 1 2116702 Synechocystis sp. IPPAS B-1465 species 0 499 0 538 1147 Synechocystis sp. PCC 6714 species 1 0 3733 Leptolyngbyaceae 1890438 family 29 6 1 Leptolyngbya 47251 17 genus 0 3704 1 5 3 2937 0 no rank 2650499 1 species 1752064 Leptolyngbya sp. NIES-3755 638 0 574 0 species Leptolyngbya sp. PCC 7376 111781 1 1 species 1080068 Leptolyngbya sp. O-77 1725 0 1 750 0 species Leptolyngbya boryana 1184 2 1890429 family 0 1044 1 2 155977 Acaryochloris 1 genus 0 1044 1043 0 species Acaryochloris marina 155978 1 869 0 family 2303730 2 2 1 0 869 170610 Halomicronema genus 5 1 species 1209493 Halomicronema hongdechloris 864 0 1213 Prochloraceae 5 family 0 6118 1 5 1 4 1218 Prochlorococcus genus 18 0 6113 1 5018 0 species 1219 Prochlorococcus marinus 2 1077 0 no rank 2627481 1 species 1501269 Prochlorococcus sp. MIT 0801 553 0 0 524 1501268 Prochlorococcus sp. MIT 0604 species 1 0 26528 1890426 Synechococcaceae family 153 33 1 1 26 Synechococcus 1129 genus 398 0 19746 1 32046 Synechococcus elongatus species 0 639 1 0 782 33070 Synechococcus lividus species 23 0 17927 2626047 no rank 1 species 29410 Synechococcus sp. WH 8103 1111 0 32049 Synechococcus sp. PCC 7002 species 0 545 1 1 species 1827144 Synechococcus sp. NIES-970 660 0 1 species 1350461 Synechococcus sp. UTEX 2973 588 0 1 0 1331 321332 Synechococcus sp. JA-2-3B'a(2-13) species 1 405 0 species 195253 Synechococcus sp. PCC 6312 1 435 0 species 195498 Synechococcus sp. PCC 7117 species Synechococcus sp. KORDI-52 585425 737 0 1 Synechococcus sp. CC9605 110662 species 0 775 1 Synechococcus sp. PCC 73109 374982 species 0 369 1 366 0 species 316279 Synechococcus sp. CC9902 1 species Synechococcus sp. PCC 7502 1173263 724 0 1 1142 0 species Synechococcus sp. WH 8102 84588 1 1 741 0 species Synechococcus sp. KORDI-100 1280380 1 species 32051 Synechococcus sp. WH 7803 867 0 1 0 811 166314 Synechococcus sp. WH 8109 species 0 943 316278 Synechococcus sp. RCC307 species 1 Synechococcus sp. PCC 7003 374981 species 0 524 1 species 585423 Synechococcus sp. KORDI-49 1164 0 1 species Synechococcus sp. PCC 8807 195248 472 0 1 1 0 1830 321327 Synechococcus sp. JA-3-3Ab species 1 0 983 Synechococcus sp. SynAce01 1916956 species 1 64471 Synechococcus sp. CC9311 species 0 404 146785 genus 0 603 1 1 0 603 Thermosynechococcus elongatus 146786 species 2 1 0 619 13034 Dactylococcopsis genus 14 1 292566 Dactylococcopsis salina species 0 605 5407 0 genus 94 167375 Cyanobium 3 1 1 2815 0 no rank 2627006 Cyanobium sp. NIES-981 1851505 species 0 2815 1 59930 Cyanobium gracile species 0 2498 1 1 0 792 1890505 order 1 family 1890528 792 0 genus 54298 792 0 1 1 792 0 species 54299 Chroococcidiopsis thermalis 7 1 2939 0 order 29 52604 Pleurocapsales 1890498 Dermocarpellaceae 30 family 0 2287 1 4 0 2257 102115 Stanieria 7 genus 3 1 1 species Stanieria cyanosphaera 102116 1292 0 958 0 no rank 2642663 1 1 1807358 Stanieria sp. NIES-3757 species 0 958 1890500 family 0 623 2 0 623 44474 Pleurocapsa 9 genus 2 1 1 0 614 54308 Pleurocapsa minor species class 40 307596 Gloeobacteria 3614 0 1 6 1 5 order 49 Gloeobacterales 307595 3574 0 0 3525 1890422 Gloeobacteraceae 49 family 4 1 genus 63 Gloeobacter 33071 3476 0 1 3 1 2007 0 species 33072 Gloeobacter violaceus 0 1406 1416614 Gloeobacter kilaueensis species 1 32 1 0 23300 Nostocales 1161 order 72 1 family 1892263 740 0 740 0 genus 1190 1 1 494603 no rank 0 740 1 species Fischerella sp. NIES-3754 1752063 740 0 1 3 1185 Rivulariaceae family 10 0 1462 1452 0 8 genus 373984 Rivularia 2 1 0 1444 2676603 no rank 1 Rivularia sp. PCC 7116 373994 species 0 1444 1 1219117 no rank 0 760 1 1 760 0 species Nostocales cyanobacterium HT-58-2 1940762 52 family Nostocaceae 1162 13253 0 1 18 4 genus Trichormus 264688 1747 0 1 3 1 species Trichormus variabilis 264691 796 0 947 0 species Trichormus azollae 1164 1 genus 55 1177 Nostoc 8034 0 1 10 7 0 5985 2593658 no rank 923 0 species 1869241 Nostoc sp. CENA543 1 species 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 908 0 1 species 103690 Nostoc sp. PCC 7120 929 0 1 1 0 596 317936 Nostoc sp. PCC 7107 species species Nostoc sp. NIES-3756 1751286 1028 0 1 0 678 28072 Nostoc sp. PCC 7524 species 1 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 923 0 1 Nostoc flagelliforme 1306274 species 0 1144 1 1 850 0 species Nostoc punctiforme 272131 Anabaena 1163 genus 13 0 3420 1 4 2 2619674 no rank 0 2326 1 species Anabaena sp. 90 46234 1229 0 species Anabaena sp. WA102 1647413 1097 0 1 Anabaena cylindrica 1165 species 0 1081 1 family 2661849 7013 0 8 8 1 7013 0 67 genus 1186 Calothrix 6 2619626 no rank 0 6052 798 0 species 99598 Calothrix sp. PCC 7507 1 1 2005461 Calothrix sp. NIES-4101 species 0 1094 species Calothrix sp. NIES-4071 2005469 1265 0 1 1 0 798 Calothrix sp. 336/3 1337936 species 0 1440 1954171 Calothrix sp. NIES-2098 species 1 2005462 Calothrix sp. NIES-3974 species 0 657 1 Calothrix parietina 32054 species 0 894 1 21405 0 subclass 1301283 42 1 18 order 50 1150 Oscillatoriales 8096 0 1 3 5 family Coleofasciculaceae 1892251 1715 0 1 2 20 genus Geitlerinema 63132 1710 0 1690 0 no rank 2648775 1 0 1690 Geitlerinema sp. PCC 7407 1173025 species 1 0 2255 1892252 family 3 2 1 0 1511 1205 Trichodesmium genus 19 species Trichodesmium erythraeum 1206 1492 0 1 1 genus 44471 744 0 2642155 no rank 0 744 1 1 744 0 species Microcoleus sp. PCC 7113 1173027 0 818 1892249 Cyanothecaceae 17 family 3 1 2 1 801 0 genus 42 43988 Cyanothece 0 759 2649277 no rank 1 species 395961 Cyanothece sp. PCC 7425 759 0 1 1 5 family 30 1892254 Oscillatoriaceae 2204 0 Moorea 1155738 genus 4 0 735 1 2 1 Moorea producens 1155739 species 0 731 1439 0 genus 1158 2 730 0 species Oscillatoria nigro-viridis 482564 1 species 118323 Oscillatoria acuminata 709 0 1 1 3 Gomontiellaceae 1892255 8 family 0 1054 14 genus Crinalium 241421 1046 0 1 2 0 1032 241425 Crinalium epipsammum species 1 order 17 Chroococcales 1118 13309 0 1 24 1890452 family 0 1348 2 Cyanobacterium 102234 genus 5 0 1348 1 2 1 species 379064 Cyanobacterium aponinum 1343 0 1890464 Chroococcaceae family 19 0 4464 1 7 0 1122 Chondrocystis 268175 genus 9 2 1 1 1113 0 no rank 2648896 1 1113 0 species 2005460 Chondrocystis sp. NIES-4102 1 genus 102231 670 0 1 0 670 2623012 no rank 1 670 0 species Gloeocapsa sp. PCC 7428 1173026 3 1 2653 0 12 genus 669357 Geminocystis 2625037 no rank 0 2641 2 1 0 1443 1615909 Geminocystis sp. NIES-3708 species species 1617448 Geminocystis sp. NIES-3709 1198 0 1 4 1 0 2141 1890449 Microcystaceae 36 family 2105 0 27 genus 1125 Microcystis 3 1 1126 Microcystis aeruginosa species 0 1496 1 1 2643300 no rank 0 582 1967666 Microcystis sp. MC19 species 0 582 1 Aphanothecaceae 1890450 10 family 0 5339 1 10 28070 genus 0 1852 2 species 2546356 915 0 1 0 915 65393 Cyanothece sp. PCC 7424 strain 1 1 2546359 species 0 937 0 937 Cyanothece sp. PCC 7822 497965 strain 1 2 2546365 genus 0 1320 2 1320 0 species 2546366 0 571 Cyanothece sp. PCC 8802 395962 strain 1 Cyanothece sp. PCC 8801 41431 strain 0 749 1 92682 no rank 0 496 2 Halothece 76023 genus 14 0 496 1 2 482 0 no rank 2632878 1 1 482 0 species Halothece sp. PCC 7418 65093 2 1 477 0 genus 1 Candidatus Atelocyanobacterium 1453359 1 476 0 species Candidatus Atelocyanobacterium thalassa 713887 0 1184 263510 genus 1 1 0 1184 2546360 species Cyanothece sp. ATCC 51142 43989 strain 0 1184 1 666 0 no rank 1983111 1 species cyanobacterium endosymbiont of Epithemia turgida 718217 666 0 1 0 582 1859062 no rank 2 262406 Thermobaculum genus 17 0 582 1 2 0 565 Thermobaculum terrenum 166501 species 1 0 25333 200795 Chloroflexi phylum 8 48 1 0 5512 Anaerolineae 292625 19 class 8 1 Anaerolineales 292629 order 19 0 5493 1 7 0 5474 Anaerolineaceae 292628 34 family 6 1 1 1324991 no rank 0 2738 species 1889813 Anaerolineaceae bacterium oral taxon 439 2738 0 1 0 973 2019482 Brevefilum genus 1 2 1 972 0 species 1986204 Brevefilum fermentans 1 2 1 1729 0 genus 2 Anaerolinea 233189 0 1727 167964 Anaerolinea thermophila species 1 0 1898 Caldilineae 475962 10 class 5 1 4 1 1888 0 order 14 475963 Caldilineales 3 1 1874 0 14 family Caldilineaceae 475964 19 genus Caldilinea 233191 1860 0 1 2 1 0 1841 133453 Caldilinea aerophila species 5 1 0 4121 Ardenticatenia 1382928 53 class 48 order 1382929 Ardenticatenales 4068 0 1 4 18 family Ardenticatenaceae 1382930 4020 0 1 3 4002 0 genus 21 1988031 Candidatus Promineofilum 2 1 1 1806508 Candidatus Promineofilum breve species 0 3981 Chloroflexia 32061 class 31 0 5235 1 11 5204 0 13 order 32064 Chloroflexales 10 1 5 suborder 1508594 2389 0 5 1 2389 0 family 5 1106 Chloroflexaceae 1 4 genus 70 Chloroflexus 1107 2384 0 1 914 0 species 152260 Chloroflexus aggregans Chloroflexus aurantiacus 1108 species 703 0 1400 1 2 1 strain Chloroflexus sp. Y-400-fl 480224 697 0 4 1508595 suborder 0 2802 4 1 2802 0 30 family 1508635 Roseiflexaceae 1 3 29 genus Roseiflexus 120961 2772 0 species 120962 Roseiflexus castenholzii 1299 0 1 1 0 1444 2609473 no rank 1 357808 Roseiflexus sp. RS-1 species 0 1444 0 5681 Dehalococcoidia 301297 29 class 9 1 Dehalogenimonas 670486 30 genus 0 2261 1 3 1 species 552810 Dehalogenimonas lykanthroporepellens 920 0 1 1311 0 species 1839801 Dehalogenimonas formicexedens order 40 1202465 Dehalococcoidales 3391 0 1 5 0 3351 Dehalococcoidaceae 1202464 family 25 4 1 Dehalococcoides 61434 11 genus 0 3326 1 3 0 2774 61435 Dehalococcoides mccartyi species 1 0 541 237581 no rank 1 1 541 0 species Dehalococcoides sp. UCH007 1522671 2878 0 41 class Thermomicrobia 189775 9 1 4 1 764 0 13 order 189776 Thermomicrobiales 3 1 751 0 family 4 189777 Thermomicrobiaceae 1 2 genus 2 Thermomicrobium 499 747 0 Thermomicrobium roseum 500 species 0 745 1 4 2073 0 subclass 85000 34 order Sphaerobacterales 85001 2073 0 1 4 3 suborder 255728 2039 0 1 3 Sphaerobacteraceae 85002 family 13 0 2039 2 1 2026 0 genus 18 Sphaerobacter 2056 2057 Sphaerobacter thermophilus species 0 2008 1 1297 phylum 0 48479 36 1 36 class 345 188787 Deinococci 48479 0 1 15 order 345 Deinococcales 118964 30822 0 30477 0 177 family 183710 Deinococcaceae 14 1 Deinococcus 1298 294 genus 0 30300 1 13 1 0 1908 Deinococcus deserti 310783 species 0 3621 1182571 Deinococcus swuensis species 1 1 2529 0 species 309887 Deinococcus maricopensis 2038 0 species Deinococcus puniceus 1182568 1 species 1299 Deinococcus radiodurans 2559 0 1 1 2266 0 no rank 2623546 1 species Deinococcus sp. NW-56 2080419 2266 0 1768108 Deinococcus actinosclerus species 0 2519 1 species Deinococcus peraridilitoris 432329 1621 0 1 1 0 3005 Deinococcus soli Cha et al. 2016 1309411 species 502394 Deinococcus gobiensis species 0 3446 1 1 species 55148 Deinococcus proteolyticus 2659 0 68909 Deinococcus geothermalis species 0 1835 1 1 17 223 order 68933 Thermales 14867 0 1 16 Thermaceae 188786 family 104 0 14644 1158 0 genus 14 186191 Marinithermus 2 1 1 1144 0 species 186192 Marinithermus hydrothermalis 2 1 2198 0 8 genus 208447 Oceanithermus species Oceanithermus profundus 187137 2190 0 1 1 3 65551 Meiothermus genus 23 0 2835 0 1259 52022 Meiothermus silvanus species 1 0 1553 277 Meiothermus ruber species 1 8349 0 199 genus 270 Thermus 8 1 species Thermus parvatiensis 456163 994 0 1 1 0 861 Thermus scotoductus 37636 species 1 Thermus thermophilus 274 species 0 2082 1 no rank 2619321 1428 0 0 1428 Thermus sp. CCB_US3_UF1 1111069 species 1 929 0 species 56957 Thermus oshimai 1 1 species 56956 Thermus brockianus 730 0 Thermus aquaticus 271 species 0 1126 1 2762275 order 0 2445 3 3 1 0 2445 332247 Trueperaceae family 9 18 genus Truepera 332248 2436 0 1 2 1 species Truepera radiovictrix 332249 2418 0 289 0 85574 2157 superkingdom 1 0 120 1783276 clade 1 1801631 phylum 0 120 2490204 genus 0 120 1 120 0 species Candidatus Micrarchaeota archaeon Mia14 1920749 1 53 7948 0 clade 1783275 2418 0 phylum 651137 13 0 559 Nitrososphaeria 1643678 1 class 6 1 1 4 Nitrososphaerales 1033996 2 order 0 470 7 family Nitrososphaeraceae 1033997 468 0 1 3 0 461 Nitrososphaera 497726 4 genus 2 1 species 1034015 Nitrososphaera viennensis 457 0 1 88 0 order 1968909 1 1 88 0 family 1968910 1 498374 genus 0 88 88 0 species Candidatus Nitrosocaldus islandicus 2045011 1 1 4 3 order Nitrosopumilales 31932 1021 0 0 1018 338190 family 3 1 genus 1993653 294 0 294 0 species 1898749 Candidatus Nitrosomarinus catalina 1 2 genus 338191 724 0 1 species 1580092 Candidatus Nitrosopumilus adriaticus 345 0 1 species Candidatus Nitrosopumilus sediminis 1229909 379 0 838 0 no rank 651142 3 2 1825023 genus 0 489 229 0 species 1846278 Candidatus Nitrosotenuis sp. AQ6f 1 1 260 0 species Candidatus Nitrosotenuis cloacae 1603555 349 0 genus 1593364 1 349 0 species Candidatus Nitrosopelagicus brevis 1410606 1 1 51967 phylum 0 80 0 80 498845 genus 1 1 0 80 498846 Candidatus Korarchaeum cryptofilum species 39 0 5450 28889 phylum 39 1 0 5450 Thermoprotei 183924 class 7 1 12 Thermoproteales 2266 2 order 0 1099 6 0 696 2267 family 2276 genus 0 87 1 2277 Pyrobaculum islandicum species 0 87 1 0 189 2270 genus 2 0 77 2271 Thermoproteus tenax species 1 112 0 species Thermoproteus uzoniensis 184117 1 2 164450 genus 0 323 1 Vulcanisaeta moutnovskia 985052 species 0 155 168 0 species 164451 Vulcanisaeta distributa 1 76886 genus 0 97 1 1 0 97 Caldivirga maquilingensis 76887 species family 114378 401 0 5 401 0 genus 4 Thermofilum 2268 5 1 81 0 species Thermofilum uzonense 1550241 1 1 species Thermofilum adornatus 1365176 90 0 1483572 Thermofilum carboxyditrophus species 0 97 1 1 0 129 2269 Thermofilum pendens species 2909 0 order 2281 9 118883 family 0 2909 9 1 588 0 genus 69655 1 Sulfolobus tokodaii 111955 species 0 588 1 4 2284 Sulfolobus 1 genus 0 1431 1 0 379 Sulfolobus acidocaldarius 2285 species Sulfolobus islandicus 43080 species 0 660 1 1 0 391 2641160 no rank 1 1891280 Sulfolobus sp. A20 species 0 391 12914 genus 0 301 1 0 301 Acidianus hospitalis 563177 species 1 genus 41980 240 0 2 1 1006005 Metallosphaera cuprina species 0 95 1 Metallosphaera sedula 43687 species 0 145 0 349 2100760 genus 1 1 0 349 Sulfolobus solfataricus 2287 species 2 order 114380 Desulfurococcales 984 0 1 14 family 2307 371 0 4 1 0 100 54251 genus 0 100 Pyrolobus fumarii 54252 species 1 0 173 Hyperthermus 54247 genus 2 2 1 1 species Hyperthermus butylicus 54248 171 0 0 98 2308 genus 1 1 0 98 Pyrodictium delaneyi 1273541 species 0 611 2272 Desulfurococcaceae family 1 9 1 2 0 84 2273 genus 1 0 45 2275 Desulfurococcus mucosus species 1 94694 Desulfurococcus amylolyticus species 0 39 0 254 2279 genus 2 1 Staphylothermus hellenicus 84599 species 0 97 species Staphylothermus marinus 2280 157 0 1 1 477695 genus 0 109 0 109 1200300 Thermogladius calderae species 1 1 genus 54253 55 0 1 55 0 species 54254 Thermosphaera aggregans 2 0 108 54258 genus 76 0 species Ignicoccus hospitalis 160233 1 species Ignicoccus islandicus 54259 32 0 1 3 0 451 871006 order 1 255472 family 0 348 1 348 0 genus 200414 1 348 0 species 200415 Caldisphaera lagunensis 0 103 871007 family 2 0 103 Acidilobus 105850 genus 1 2 1 102 0 species 242703 Acidilobus saccharovorans 1 28890 Euryarchaeota phylum 18 0 77506 1 235 class 6 183980 Archaeoglobi 1543 0 1 11 2231 Archaeoglobales order 5 0 1537 1 10 Archaeoglobaceae 2232 1 family 0 1532 1 9 1 genus 54260 228 0 1 228 0 species 54261 Ferroglobus placidus 0 930 2233 genus 4 1 0 182 Archaeoglobus veneficus 58290 species 1 375 0 species Archaeoglobus fulgidus 2234 1 species 1316941 Archaeoglobus sulfaticallidus 269 0 1 Archaeoglobus profundus 84156 species 0 104 3 genus 190818 Geoglobus 373 0 1 3 Geoglobus ahangari 113653 species 0 226 1 1 0 144 565033 Geoglobus acetivorans species 1 40 Thermococci 183968 class 13 0 7950 2258 Thermococcales 26 order 0 7937 1 39 0 7911 2259 Thermococcaceae family 21 38 1 6362 0 genus 40 2263 Thermococcus 29 1 0 1347 2627626 no rank 6 1 2008440 Thermococcus sp. 5-4 species 0 291 1 270 0 species 1042877 Thermococcus sp. 4557 0 245 Thermococcus sp. EXT12c 2016361 species 1 132 0 species Thermococcus sp. P6 122420 1 1 species Thermococcus sp. 2319x1 1674923 147 0 1 246969 Thermococcus sp. AM4 species 0 262 1 species 53952 Thermococcus peptonophilus 225 0 species Thermococcus celer 2264 257 0 1 1 0 229 187880 Thermococcus radiotolerans species 1 314 0 species 2265 Thermococcus litoralis species Thermococcus gorgonarius 71997 200 0 1 110164 Thermococcus guaymasensis species 0 193 1 1 195 0 species 277988 Thermococcus thioreducens species Thermococcus nautili 195522 170 0 1 species Thermococcus cleftensis 163003 237 0 1 1 0 220 Thermococcus eurythermalis 1505907 species 287 0 species Thermococcus profundus 49899 1 188 0 species Thermococcus kodakarensis 311400 1 1 0 416 55802 Thermococcus barophilus species 107 0 species 1712654 Thermococcus piezophilus 1 1 Thermococcus barossii 54077 species 0 298 1 223 0 species Thermococcus pacificus 71998 229 0 species 172049 Thermococcus sibiricus 1 1 169 0 species 54262 Thermococcus chitonophagus 342948 Thermococcus onnurineus species 0 248 1 0 206 Thermococcus siculi 72803 species 1 0 168 582419 Thermococcus paralvinellae species 1 1 196 0 species Thermococcus gammatolerans 187878 209 0 genus 83867 1 1 0 209 Palaeococcus pacificus 971279 species genus 2260 1319 0 7 Pyrococcus kukulkanii 1609559 species 0 149 1 171 0 species Pyrococcus horikoshii 53953 1 1 132 0 species 1008460 Pyrococcus yayanosii 2 0 473 2629106 no rank 296 0 species Pyrococcus sp. ST04 1183377 1 1 species Pyrococcus sp. NA2 342949 177 0 136 0 species 29292 Pyrococcus abyssi 1 1 species Pyrococcus furiosus 2261 258 0 0 4747 2283796 clade 21 183967 Thermoplasmata 15 class 0 4392 1 18 1 no rank 1234666 842 0 1 842 0 species 1495144 methanogenic archaeon ISO4-H5 order 2 1235850 Methanomassiliicoccales 1265 0 1 6 3 1 0 702 Methanomassiliicoccaceae 1577788 family 8 242 0 genus 1607807 1 1 0 242 1577791 Candidatus Methanoplasma termitum species 1 genus 1080709 452 0 1 452 0 species Candidatus Methanomassiliicoccus intestinalis 1406512 family 2517203 561 0 2 2 1 561 0 19 genus Candidatus Methanomethylophilus 1291539 1 0 542 Candidatus Methanomethylophilus alvus 1291540 species 2301 Thermoplasmatales 1 order 0 2270 1 10 1 751 0 no rank 1919231 751 0 species Thermoplasmatales archaeon BRNA1 1054217 1 2 291 0 family 1747776 2 1 0 291 Cuniculiplasma 1747777 2 genus 1673428 Cuniculiplasma divulgatum species 0 289 1 1 3 6 family 46659 Thermoplasmataceae 261 0 2302 genus 0 255 2 0 125 Thermoplasma volcanium 50339 species 1 Thermoplasma acidophilum 2303 species 0 130 1 1 family 46630 365 0 1 46631 genus 0 365 1 82076 Picrophilus torridus species 0 365 90142 family 0 601 2 0 601 74968 genus 2 289 0 species Ferroplasma acidarmanus 97393 1 1 312 0 species 74969 Ferroplasma acidiphilum clade 1803510 355 0 3 1 3 genus 3 379546 Aciduliprofundum 355 0 185 0 species Aciduliprofundum boonei 379547 1 1 167 0 no rank 2633939 673860 Aciduliprofundum sp. MAR08-339 species 0 167 1 40 clade 2283794 17933 0 class 3 Methanobacteria 183925 9790 0 1 24 order 1 2158 Methanobacteriales 9787 0 1 23 2178 family 0 526 1 1 genus 2179 526 0 1 Methanothermus fervidus 2180 species 0 526 family 2159 9260 0 21 1 5 genus 1 145260 Methanothermobacter 659 0 1 162 0 no rank 2631116 1 162 0 species 866790 Methanothermobacter sp. CaT2 0 160 Methanothermobacter marburgensis 145263 species 1 Methanothermobacter thermautotrophicus 145262 species 0 140 1 1 196 0 species Methanothermobacter wolfeii 145261 8 1 2561 0 genus 1 2160 Methanobacterium 559 0 no rank 2627676 2 1 species 1911685 Methanobacterium sp. MZ-A1 260 0 1 299 0 species 1379702 Methanobacterium sp. MB1 species 118062 Methanobacterium congolense 302 0 1 1 59277 Methanobacterium subterraneum species 0 271 species Methanobacterium lacus 877455 495 0 1 559 0 species Methanobacterium paludis 868131 1 2162 Methanobacterium formicicum species 0 374 1 1 genus 2316 919 0 1 species 2317 Methanosphaera stadtmanae 919 0 7 1 5121 0 11 genus Methanobrevibacter 2172 Methanobrevibacter ruminantium 83816 species 0 766 1 1 1037 0 species 294671 Methanobrevibacter olleyae 0 1190 Methanobrevibacter smithii 2173 species 1 0 801 230361 Methanobrevibacter millerae species 1 2 1316 0 no rank 2638681 1 0 626 224719 Methanobrevibacter sp. AbM4 species 690 0 species 1609968 Methanobrevibacter sp. YE315 1 class 7 Methanococci 183939 8143 0 1 16 15 order 2182 8136 0 9 3075 0 family 196117 2 1 0 338 Methanotorris 196119 5 genus 1 0 333 Methanotorris igneus 2189 species 1 7 Methanocaldococcus 196118 4 genus 0 2737 species 1301915 Methanocaldococcus bathoardescens 627 0 1 1 species Methanocaldococcus infernus 67760 297 0 458 0 no rank 2641196 1 458 0 species 644281 Methanocaldococcus sp. FS406-22 1 569 0 species Methanocaldococcus jannaschii 2190 1 1 0 472 83171 Methanocaldococcus fervens species 1 73913 Methanocaldococcus vulcanius species 0 310 5061 0 family 2183 6 1 5 3 genus Methanococcus 2184 4574 0 2720 0 species 39152 Methanococcus maripaludis 1 1 species 2188 Methanococcus voltae 368 0 1 Methanococcus aeolicus 42879 species 0 802 2187 Methanococcus vannielii species 0 681 1 1 487 0 genus 155862 1 species Methanothermococcus okinawensis 155863 487 0 2290931 clade 0 45315 122 0 20819 Methanomicrobia 224756 class 28 53 1 38 order 570264 Methanocellales 1145 0 1 5 1107 0 family 1 570265 Methanocellaceae 4 1 1 3 1 genus 570266 Methanocella 1106 0 0 282 1175444 Methanocella conradii species 1 1 species Methanocella arvoryzae 1175445 823 0 1 18 2191 Methanomicrobiales order 36 0 5096 7 1 2248 0 family 2 2194 Methanomicrobiaceae 4 1 0 1747 Methanoculleus 45989 32 genus Methanoculleus bourgensis 83986 species 0 732 1 1 no rank 2619537 374 0 374 0 species Methanoculleus sp. MAB1 86622 1 species Methanoculleus marisnigri 2198 609 0 1 0 499 Methanolacinia 230355 genus 3 2 1 1 0 496 Methanolacinia petrolearia 54120 species 2 88404 family 0 664 664 0 6 genus 2192 Methanocorpusculum 2 1 1 658 0 species Methanocorpusculum labreanum 83984 family 6 Methanoregulaceae 1198451 1780 0 1 6 Methanoregula 395331 genus 6 0 1149 1 3 1 358766 Methanoregula boonei species 0 354 789 0 species 882104 Methanoregula formicica 1 1 2 475087 Methanosphaerula genus 1 0 625 1 Methanosphaerula palustris 475088 species 0 624 2 196137 family 0 368 Methanospirillum 2202 genus 1 0 368 1 2 1 species 2203 Methanospirillum hungatei 367 0 order 9 Methanosarcinales 94695 14550 0 1 29 13542 0 family 17 Methanosarcinaceae 2206 24 1 genus 3 2175 Methanohalophilus 873 0 1 3 species Methanohalophilus halophilus 2177 449 0 1 species Methanohalophilus mahii 2176 421 0 1 genus 101191 539 0 1 1 0 539 Methanomethylovorans hollandica 101192 species 2220 Methanolobus genus 1 0 617 1 2 0 616 Methanolobus psychrophilus 420950 species 1 1 13 30 genus 2207 Methanosarcina 9725 0 1 0 1015 Methanosarcina horonobensis 418008 species 1 813 0 species Methanosarcina vacuolata 2215 353 0 species 170861 Methanosarcina lacustris 1 1 38027 Methanosarcina siciliae species 0 634 2210 Methanosarcina thermophila species 0 415 1 761 0 species 2214 Methanosarcina acetivorans 1 0 1083 Methanosarcina mazei 2209 species 1 0 1912 Methanosarcina barkeri 2208 species 1 4 0 2709 2644672 no rank species Methanosarcina sp. Kolksee 1434099 937 0 1 1434100 Methanosarcina sp. MTP4 species 0 555 1 0 660 Methanosarcina sp. WH1 1434102 species 1 1434103 Methanosarcina sp. WWM596 species 0 557 1 0 433 196136 genus 1 1 0 433 39669 Methanosalsum zhilinae species 2225 genus 0 706 2 1 407 0 species Methanococcoides burtonii 29291 1 species Methanococcoides methylutens 2226 299 0 632 0 genus 2321 1 1 species Methanohalobium evestigatum 2322 632 0 4 1 0 999 Methanosaetaceae 143067 10 family 0 989 2222 Methanothrix 2 genus 3 1 Methanosaeta harundinacea 301375 species 0 534 1 1 0 453 2223 Methanothrix soehngenii species 1 69 Halobacteria 183963 146 class 0 24496 1 28 118 order 2235 Halobacteriales 9275 0 1 16 1963268 Haloarculaceae family 74 0 6081 146825 Halorhabdus genus 4 0 1300 1 3 Halorhabdus tiamatea 430914 species 0 565 1 1 species 146826 Halorhabdus utahensis 731 0 0 692 Halorientalis 1073987 genus 4 2 1 1 0 688 2648975 no rank 1932360 Halorientalis sp. IM1011 species 0 688 1 203135 Halomicrobium genus 13 0 645 1 2 632 0 species 57705 Halomicrobium mukohataei 1 genus 2 63743 Natronomonas 901 0 1 3 1 0 498 Natronomonas pharaonis 2257 species 1 401 0 species Natronomonas moolapensis 416273 1 5 67 genus 2237 Haloarcula 2469 0 1 species 51589 Haloarcula hispanica 712 0 species 2238 Haloarcula marismortui 588 0 1 no rank 2624677 578 0 1 1 578 0 species 1592728 Haloarcula sp. CBA1115 Haloarcula taiwanensis 1932004 species 0 524 1 0 3076 2236 Halobacteriaceae family 22 11 1 1 2 4 genus Halalkalicoccus 332246 414 0 1 410 0 species 413810 Halalkalicoccus jeotgali 2 1 0 362 Halodesulfurarchaeum 1980514 3 genus 0 359 1873524 Halodesulfurarchaeum formicicum species 1 genus 28 2239 Halobacterium 1997 0 1 4 749 0 species 1407499 Halobacterium hubeiense 1 1 species 2242 Halobacterium salinarum 430 0 1 no rank 2668073 790 0 790 0 species 751944 Halobacterium sp. DL1 1 1 genus 1656823 Halanaeroarchaeum 281 0 1 2 species 1604004 Halanaeroarchaeum sulfurireducens 280 0 1 7170 0 79 order 1644055 Haloferacales 18 1 family 18 1644056 Haloferacaceae 3666 0 1 8 2 1 477 0 5 genus 60846 Halogeometricum 1 60847 Halogeometricum borinquense species 0 472 4 1 0 2912 Haloferax 2251 genus 45 1 species Haloferax mediterranei 2252 575 0 species Haloferax gibbonsii 35746 1132 0 1 1 species 2246 Haloferax volcanii 1160 0 293431 genus 0 259 1 0 259 293091 Haloquadratum walsbyi species 1 2830 0 family 13 1963271 Halorubraceae 8 1 0 537 Halopenitus 1209988 4 genus 2 1 1 1048396 Halopenitus persicus species 0 533 1 2 genus 5 1644057 Salinigranum 918 0 1 species 755307 Salinigranum rubrum 913 0 1 3 53 genus Halorubrum 56688 1362 0 0 625 Halorubrum lacusprofundi 2247 species 1 1 species Halorubrum trapanicum 29284 684 0 0 595 2678336 no rank 1 1 species halophilic archaeon DL31 756883 595 0 1 22 1644060 Natrialbales order 81 0 7905 1 21 93 family Natrialbaceae 1644061 7824 0 88723 Natrinema 14 genus 0 1431 1 3 1 0 690 2622230 no rank 0 690 Natrinema sp. J7-2 406552 species 1 1 727 0 species Natrinema pellirubrum 69525 1 2 Halobiforma 203193 genus 1 0 1276 1 0 1275 229731 Halobiforma lacisalsi species 1 2 2 genus 2256 Natronobacterium 415 0 1 0 413 Natronobacterium gregoryi 44930 species 2 1 584 0 6 genus 353799 Halostagnicola species 353800 Halostagnicola larsenii 578 0 1 2 1 0 567 63742 Natrialba 1 genus 1 0 566 13769 Natrialba magadii species 1 3 genus 45 Haloterrigena 121871 1210 0 species 62320 Haloterrigena turkmenica 715 0 1 0 450 Haloterrigena daqingensis 588898 species 1 1 2 Salinarchaeum 1269201 6 genus 0 550 no rank 2621923 544 0 1 1 544 0 species 1333523 Salinarchaeum sp. Harcht-Bsk1 29287 Natronococcus genus 8 0 625 1 2 1 0 617 29288 Natronococcus occultus species 2 1 1073 0 genus 4 Halopiger 387342 1 387343 Halopiger xanaduensis species 0 1069