members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 27833 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4794 9058958 Bacteria 8903414 1 4475 0 2 superkingdom 64 5 0 clade 2498710 717 717 67814 phylum 0 5 5 0 693071 class 1 Caldisericia 717 1 18 4 693072 order 0 1 Caldisericales 716 1 698 Caldisericaceae 3 0 693073 family 3 0 genus 693074 2 1 695 Caldisericum 1 Caldisericum exile 694 1 0 species 693075 6 phylum 68297 0 2453 2453 Dictyoglomia 1 0 class 203486 6 1 1 Dictyoglomales 2452 4 5 0 order 203487 2448 Dictyoglomaceae 1 0 203488 family 4 3 0 13 genus 3 7 2445 Dictyoglomus 1 1 0 513050 species Dictyoglomus turgidum 1223 1 0 species 14 Dictyoglomus thermophilum 1215 20 0 57723 phylum 5783 Blastocatellia 476 1 3 0 1562566 class 4 458032 genus 0 2 6 472 Chloracidobacterium 1 0 458033 species 1 466 Chloracidobacterium thermophilum 5307 Acidobacteriia 1 class 204432 0 17 15 4 332160 order 0 5 Solibacterales 913 1 family 332161 0 3 2 908 Solibacteraceae 1 1 906 Candidatus Solibacter 18 332162 genus 0 2 Candidatus Solibacter usitatus 888 1 332163 species 0 Acidobacteriales 4379 1 12 order 204433 0 28 4351 Acidobacteriaceae 1 family 204434 0 11 32 Terriglobus 1187 1 3 0 genus 392733 7 732 Terriglobus saanensis 870903 species 0 1 species 392734 0 1 448 Terriglobus roseus Candidatus Koribacter 573 1 2 0 genus 658061 6 1 0 species 658062 Candidatus Koribacter versatilis 567 1142 Acidobacterium 1 0 33973 genus 2 2 species 33075 0 1 1140 Acidobacterium capsulatum Granulicella 1417 1 3 genus 940557 0 13 1 species 940614 0 Granulicella mallensis 481 940615 species 0 1 923 Granulicella tundricola 27 0 200783 phylum 11661 11661 Aquificae 1 0 class 187857 27 24 1 Desulfurobacteriales 1692 6 6 1485951 order 0 4 0 family 558314 5 1 1686 Desulfurobacteriaceae 1 Thermovibrio 197 2 2 0 171868 genus 1 228745 species 0 Thermovibrio ammonificans 195 Desulfurobacterium 1485 1 2 0 64159 genus 1 1 64160 species 0 Desulfurobacterium thermolithotrophum 1484 13 32069 order 0 20 1 9945 Aquificales Hydrogenothermaceae 4748 1 5 0 family 224027 8 1 3787 Sulfurihydrogenibium 29 0 212790 genus 3 Sulfurihydrogenibium azorense 1638 1 0 309806 species 2120 1 0 2619248 no rank 1 0 436114 species Sulfurihydrogenibium sp. YO3AOP1 2120 953 genus 182899 0 1 953 Persephonella marina 0 309805 species 1 0 64898 family 13 8 4737 Aquificaceae 1 168657 genus 0 6 105 3720 Hydrogenobaculum 1 5 0 no rank 2622382 3615 Hydrogenobaculum sp. Y04AAS1 711 1 380749 species 0 0 547146 species 1 727 Hydrogenobaculum sp. SN 1 0 547143 species Hydrogenobaculum sp. 3684 725 0 547145 species 1 725 Hydrogenobaculum sp. SHO 727 Hydrogenobaculum sp. HO 547144 species 0 1 1 2 0 2713 genus 1 Aquifex 254 1 63363 species 0 Aquifex aeolicus 253 genus 939 0 1 261 261 Hydrogenobacter thermophilus 0 species 940 1 75905 genus 0 3 2 494 Thermocrinis 1 1 0 75906 species Thermocrinis ruber 213 Thermocrinis albus 279 1 0 species 136094 1 0 90150 no rank 447 1 genus 412592 0 447 0 species 412593 1 447 Thermosulfidibacter takaii Proteobacteria 2517284 1 2053 0 1224 phylum 565 6 1807140 class 0 2851 1 Acidithiobacillales 2851 68 6 225057 order 0 1 Acidithiobacillaceae 2783 39 5 0 family 225058 2744 Acidithiobacillus 1 119977 genus 0 4 29 1 species 920 0 Acidithiobacillus ferrooxidans 831 976 Acidithiobacillus caldus 0 species 33059 1 Acidithiobacillus ferrivorans 908 1 0 species 160808 194754 0 68525 subphylum 200 Deltaproteobacteria 93507 1 129 class 28221 0 98 462 0 29 order 38 1 49040 Myxococcales 8 0 suborder 80812 16386 3 family 1055686 0 7 Sandaracinaceae 2598 1 2 0 genus 1055688 14 Sandaracinus 2591 1 1 927083 species 0 Sandaracinus amylolyticus 2577 family 49 0 5 32 13788 Polyangiaceae 1 2 0 genus 50 8 Chondromyces 2429 1 1 0 52 species Chondromyces crocatus 2421 33 39643 genus 0 2 1 11327 Sorangium 11294 Sorangium cellulosum species 56 0 1 27701 0 80811 suborder 26 family 39 0 9 82 10822 Archangiaceae 1 6180 Archangium 1 genus 47 0 2 2 6178 Archangium gephyra 0 species 48 1 2 0 44 genus 8 Melittangium 1458 1 1450 Melittangium boletus 0 83453 species 1 Cystobacter 1832 1 2 42 genus 0 11 Cystobacter fuscus 1821 1 0 species 43 1 1270 Stigmatella 6 0 40 genus 2 41 species 0 1 1264 Stigmatella aurantiaca 0 family 1524215 5 12 4649 Anaeromyxobacteraceae 1 4 0 genus 161492 32 Anaeromyxobacter 4637 1 2799 0 2620896 no rank 2 Anaeromyxobacter sp. Fw109-5 1568 1 species 404589 0 1231 Anaeromyxobacter sp. K 0 447217 species 1 species 161493 0 1 1806 Anaeromyxobacter dehalogenans 0 1524213 family 3 6 1028 Vulgatibacteraceae 1 2 0 genus 1524214 3 Vulgatibacter 1022 1 1019 Vulgatibacter incomptus species 1391653 0 1 9 31 family 0 41 Myxococcaceae 11202 1 7778 Myxococcus 1 32 genus 0 5 125 0 1297742 species 1 1547 Myxococcus hansupus Myxococcus xanthus 1184 1 0 34 species Myxococcus fulvus 3295 1 0 species 33 species 83455 0 1 1627 Myxococcus stipitatus genus 83461 0 3 20 3383 Corallococcus 1 Corallococcus coralloides 1865 1 species 184914 0 0 35 species 1 1498 Myxococcus macrosporus suborder 224462 0 3 4491 1 4491 Kofleriaceae 34 0 family 224464 3 4457 Haliangium 1 162027 genus 0 2 34 Haliangium ochraceum 4423 1 0 80816 species 1 2647 Desulfurellales 2 order 213113 0 6 4 family 117942 0 5 1 2645 Desulfurellaceae 4 2 0 84404 genus 1 Hippea 841 84405 species 0 1 837 Hippea maritima Desulfurella 1800 1 2 genus 33001 0 3 1797 Desulfurella acetivorans 0 33002 species 1 21 order 453227 0 4 1 786 Desulfarculales 1 Desulfarculaceae 765 14 3 0 453228 family 10 0 453229 genus 2 1 751 Desulfarculus 1 453230 species 0 Desulfarculus baarsii 741 Desulfovibrionales 10668 1 25 0 213115 order 103 1 9489 Desulfovibrionaceae 43 family 194924 0 17 genus 872 0 9 43 5465 Desulfovibrio 1 1 0 species 1725232 Candidatus Desulfovibrio trichonymphae 173 282 2593640 no rank 0 1 282 Desulfovibrio sp. G11 631220 species 0 1 410 Desulfovibrio alaskensis 58180 species 0 1 species 44742 0 1 315 Desulfovibrio fairfieldensis 1131 Desulfovibrio magneticus species 184917 0 1 302 Desulfovibrio piger species 901 0 1 Desulfovibrio desulfuricans 841 1 876 species 0 881 species 0 1 1968 Desulfovibrio vulgaris Pseudodesulfovibrio 1388 1 4 0 2035811 genus 12 Pseudodesulfovibrio aespoeensis 574 1 0 species 182210 1 species 1716143 0 Pseudodesulfovibrio indicus 457 1 0 57320 species Pseudodesulfovibrio profundus 345 1518 1 0 genus 41707 29546 species 0 1 1518 Lawsonia intracellularis 532 1 2794998 genus 0 Desulfovibrio salexigens 532 1 880 species 0 543 1 0 genus 2582840 Desulfovibrio africanus 543 1 species 873 0 3 family 213117 0 8 Desulfohalobiaceae 301 1 1 Desulfohalobium 293 1 2 genus 45662 0 Desulfohalobium retbaense 292 1 0 45663 species 5 4 213116 family 0 1 Desulfomicrobiaceae 775 0 genus 898 3 5 770 Desulfomicrobium 1 Desulfomicrobium baculatum 453 1 species 899 0 Desulfomicrobium orale 312 1 0 132132 species 1 15773 Desulfuromonadales 102 order 69541 0 24 1 Desulfuromonadaceae 4512 23 9 213421 family 0 0 genus 890 3 20 2682 Desulfuromonas 1 1 0 1603606 species Desulfuromonas soudanensis 1960 0 2614637 no rank 1 702 species 1823759 0 1 702 Desulfuromonas sp. DDH964 5 0 18 genus 11 Pelobacter 1807 1 Pelobacter carbinolicus 429 1 0 species 19 29543 species 0 1 556 Pelobacter propionicus 0 2620299 no rank 1 424 0 species 1842532 1 424 Pelobacter sp. SFB93 1 species 29542 0 Pelobacter acetylenicus 387 37 213422 family 0 14 1 11159 Geobacteraceae 1 Geoalkalibacter 538 9 2 0 392332 genus species 483547 0 1 529 Geoalkalibacter subterraneus 1 Geobacter 10584 98 11 0 genus 28231 1 0 species 28232 Geobacter metallireducens 1896 573 Geobacter pickeringii 0 345632 species 1 0 species 225194 1 588 Geobacter bemidjiensis 2 0 2627627 no rank 1933 443144 species 0 1 550 Geobacter sp. M21 1 0 species 443143 Geobacter sp. M18 1383 Geobacter daltonii 704 1 0 species 1203471 Geobacter uraniireducens 3399 1 species 351604 0 species 1340425 0 1 403 Geobacter anodireducens Geobacter sulfurreducens 459 1 species 35554 0 531 Geobacter lovleyi 313985 species 0 1 1853 Syntrophobacterales 1 0 213462 order 11 15 1 Syntrophobacteraceae 529 4 3 0 family 213465 1 Syntrophobacter 525 10 2 0 29526 genus Syntrophobacter fumaroxidans 515 1 0 119484 species 7 213468 family 0 4 Syntrophaceae 1309 1 4 2 2357 genus 0 1 Desulfomonile 576 572 Desulfomonile tiedjei 0 2358 species 1 1 Syntrophus 374 1 2 genus 43773 0 1 0 316277 species Syntrophus aciditrophicus 373 1 355 Desulfobacca 9 60892 genus 0 2 60893 species 0 1 346 Desulfobacca acetoxidans Desulfobacterales 12642 1 20 order 213118 0 59 0 family 213121 9 26 2627 Desulfobulbaceae 1 1 Desulfocapsa 744 8 2 53318 genus 0 Desulfocapsa sulfexigens 736 1 species 65555 0 534 Desulfurivibrio 1 0 427922 genus 2 3 0 species 427923 1 531 Desulfurivibrio alkaliphilus 1 450 Desulfobulbus 9 0 genus 893 2 441 Desulfobulbus sp. ORNL species 1986146 0 1 1 873 Desulfotalea 8 genus 109168 0 2 Desulfotalea psychrophila 865 1 0 species 84980 21 0 family 213119 10 1 9956 Desulfobacteraceae 603 Desulfobacterium 1 0 2295 genus 2 5 0 species 2296 1 598 Desulfobacterium autotrophicum 2 genus 28222 0 2 Desulfobacula 3307 1 0 28223 species 1 3305 Desulfobacula toluolica 2 genus 218207 0 13 Desulfatibacillum 4077 1 0 259354 species 1 4064 Desulfatibacillum alkenivorans 4 0 896 genus 3 1 1948 Desulfococcus species 181663 0 1 1323 Desulfococcus oleovorans 621 Desulfococcus multivorans 897 species 0 1 0 class 29547 71 48 101247 Epsilonproteobacteria 1 4851 Nautiliales 1 order 235899 0 5 10 2795691 family 0 2 606 8 269258 genus 0 2 1 606 Nitratiruptor 598 1 no rank 2624044 0 1 species 387092 0 Nitratiruptor sp. SB155-2 598 224467 family 0 2 4235 Nautilia 4235 1 2 0 genus 191291 3 1 244787 species 0 Nautilia profundicola 4232 order 213849 0 65 173 96348 Campylobacterales 1 2711 0 2771472 family 5 genus 265570 0 3 22 1393 Sulfurovum 1 1 2646778 no rank 0 689 species 387093 0 1 689 Sulfurovum sp. NBC37-1 1 0 species 206403 Sulfurovum lithotrophicum 682 1318 Nitratifractor 1 269260 genus 0 2 4 0 269261 species 1 1314 Nitratifractor salsuginis 4 0 family 2771471 2814 1 2513 Sulfurimonas 10 genus 202746 0 3 species 202747 0 1 1124 Sulfurimonas autotrophica 1379 Sulfurimonas denitrificans species 39766 0 1 1 0 286130 genus 301 301 Sulfuricurvum kujiense species 148813 0 1 1 19375 Helicobacteraceae 11 72293 family 0 14 12 0 209 genus 31 Helicobacter 19047 1 0 138563 species 1 1371 Helicobacter cetorum Helicobacter felis 245 1 species 214 0 590 Helicobacter typhlonius 76936 species 0 1 Helicobacter mustelae 462 1 0 species 217 455 Helicobacter acinonychis 0 212 species 1 0 no rank 2593540 1 535 1 0 222136 species Helicobacter sp. MIT 01-6242 535 0 32025 species 1 854 Helicobacter hepaticus 1 37372 species 0 Helicobacter bilis 828 species 210 0 1 12535 Helicobacter pylori 513 Helicobacter himalayensis species 1591088 0 1 628 Helicobacter cinaedi species 213 0 1 317 0 843 genus 1 1 844 species 0 Wolinella succinogenes 317 1 Campylobacteraceae 71275 83 41 72294 family 0 26 194 genus 0 327 Campylobacter 47048 1 1 species 522485 0 Campylobacter avium 1511 species 198 0 1 1412 Campylobacter hyointestinalis 1 species 374106 0 Campylobacter cuniculorum 1369 1999 Campylobacter fetus 0 196 species 1 1 488546 species 0 Campylobacter peloridis 1861 0 species 201 1 5222 Campylobacter lari 260714 species 0 1 2066 Campylobacter insulaenigrae 610 Campylobacter lanienae 75658 species 0 1 1 0 species 76517 Campylobacter hominis 1079 5688 2593542 no rank 0 4 Campylobacter sp. RM16704 2291 1 1500960 species 0 1 0 1660074 species Campylobacter sp. RM8964 1292 1 0 1660076 species Campylobacter sp. RM12175 1210 895 Campylobacter sp. RM6137 1660073 species 0 1 1 0 827 species Campylobacter ureolyticus 2201 1 species 1031542 0 Campylobacter volucris 1943 0 species 497724 1 2113 Campylobacter subantarcticus 1 species 28898 0 Campylobacter helveticus 986 0 species 200 1 293 Campylobacter curvus Campylobacter jejuni 4304 1 0 197 species 1 species 195 0 Campylobacter coli 3276 Campylobacter concisus 1435 1 199 species 0 0 species 824 1 286 Campylobacter gracilis Campylobacter iguaniorum 978 1 0 species 1244531 species 206 0 1 3183 Campylobacter sputorum 2906 Campylobacter pinnipediorum 1965231 species 0 1 no rank 2321108 0 5 18929 0 28196 genus 3 113 9988 Arcobacter 1 5999 Arcobacter butzleri 0 28197 species 1 3876 Arcobacter nitrofigilis 28199 species 0 1 1 0 2321187 genus 4425 4425 Arcobacter sp. LPB0137 1850254 species 0 1 4516 0 2321207 no rank 1 1 species 944547 0 Arcobacter sp. L 4516 83 9 genus 57665 0 1 Sulfurospirillum 5215 species 194424 0 1 529 Sulfurospirillum halorespirans 0 species 65553 1 707 Sulfurospirillum deleyianum 1 0 species 44674 Sulfurospirillum barnesii 654 species 66821 0 1 548 Sulfurospirillum multivorans 0 no rank 2618290 3 2403 705 Sulfurospirillum sp. SL2-1 1986224 species 0 1 0 species 1581011 1 1004 Sulfurospirillum sp. UCH001 Sulfurospirillum sp. JPD-1 694 1 220622 species 0 1 0 366522 species Sulfurospirillum cavolei 291 381894 Betaproteobacteria 1 0 class 28216 351 314 104 43 32003 order 0 1 Nitrosomonadales 16970 1165 4 0 2772226 family Sulfuricella 747 1 2 genus 935200 0 1 Sulfuricella denitrificans 746 1 0 649841 species 1 418 Sulfuriferula 5 0 1778653 genus 2 413 1 no rank 2637784 0 413 Sulfuriferula sp. AH1 0 1985873 species 1 Gallionellaceae 1151 1 5 0 90627 family 22 1 519 Sideroxydans 9 genus 314343 0 2 63745 species 0 1 510 Sideroxydans lithotrophicus 1 610 Gallionella 6 96 genus 0 2 0 species 370405 1 604 Gallionella capsiferriformans 456 Thiobacillaceae 1 2008790 family 0 3 10 1 446 Thiobacillus 13 0 genus 919 2 433 Thiobacillus denitrificans species 36861 0 1 26 12 206379 family 0 1 Nitrosomonadaceae 6793 1 Nitrosospira 1283 15 4 0 35798 genus Nitrosospira multiformis 350 1 1231 species 0 561 Nitrosospira lacus 1288494 species 0 1 Nitrosospira briensis 357 1 species 35799 0 7 0 914 genus 58 Nitrosomonas 5484 1 species 44574 0 1 1044 Nitrosomonas communis 0 2609265 no rank 2 2142 Nitrosomonas sp. AL212 1327 1 species 153948 0 815 Nitrosomonas sp. Is79A3 261292 species 0 1 Nitrosomonas europaea 417 1 0 915 species 1 44577 species 0 Nitrosomonas ureae 974 Nitrosomonas eutropha 849 1 0 916 species 1 6006 Methylophilaceae 50 0 family 32011 13 5 404 genus 0 2 1 466 Methylobacillus 0 405 species 1 461 Methylobacillus flagellatus 10 genus 359407 0 3 1 1763 Methylotenera 583 Methylotenera mobilis species 359408 0 1 1170 Methylotenera versatilis species 1055487 0 1 0 genus 1679002 3 15 2458 Candidatus Methylopumilus 1 1581557 species 0 1 1796 Candidatus Methylopumilus planktonicus 0 species 1581680 1 647 Candidatus Methylopumilus turicensis 718 Methylovorus 1 0 81682 genus 3 16 1 2634027 no rank 0 333 Methylovorus sp. MP688 333 1 0 887061 species Methylovorus glucosotrophus 369 1 species 266009 0 551 1 16 genus 0 1 0 2630143 no rank 551 species 1662285 0 1 551 Methylophilus sp. TWE2 27 2008793 family 0 5 1 1295 Sterolibacteriaceae 597 Methyloversatilis 1 0 378210 genus 2 15 1 0 2639971 no rank 582 582 Methyloversatilis sp. RAC08 1842540 species 0 1 1 Sulfuritalea 671 9 2 0 1054211 genus species 748811 0 1 662 Sulfuritalea hydrogenivorans 2 no rank 33809 0 1387 Betaproteobacteria bacterium GR16-43 746 1 1904640 species 0 beta proteobacterium CB 641 1 543913 species 0 105 0 order 206351 36 1 18765 Neisseriales 1 12081 Neisseriaceae 57 0 481 family 22 7 genus 1193515 0 2 1 1365 Snodgrassella 1 1196083 species 0 Snodgrassella alvi 1358 677 genus 71 0 1 0 72 species 1 677 Simonsiella muelleri 3 0 538 genus 2 1 581 Eikenella 578 Eikenella corrodens species 539 0 1 72 12 0 482 genus 1 Neisseria 6580 390 Neisseria zoodegmatis species 326523 0 1 Neisseria mucosa 341 1 0 species 488 428 Neisseria elongata species 495 0 1 Neisseria lactamica 502 1 species 486 0 0 2623750 no rank 2 756 390 Neisseria sp. KEM232 655307 species 0 1 Neisseria sp. 10022 366 1 1853276 species 0 487 species 0 1 2155 Neisseria meningitidis Neisseria weaveri 490 1 0 28091 species 1 490 species 0 Neisseria sicca 311 Neisseria gonorrhoeae 844 1 species 485 0 0 species 1853278 1 291 Neisseria sp. 10023 1311 0 421605 no rank 1 0 species 2052837 1 1311 Neisseriaceae bacterium DSM 100970 1510 Vitreoscilla 1 genus 59 0 3 8 Vitreoscilla filiformis 516 1 0 species 63 1 no rank 2627922 0 986 986 Vitreoscilla sp. C1 0 species 96942 1 Chromobacteriaceae 6579 1 13 0 1499392 family 76 11 2 genus 187 0 1 Aquaspirillum 546 2620219 no rank 0 1 535 Aquaspirillum sp. LM1 535 1 0 1938604 species 2 genus 168470 0 13 Laribacter 640 1 627 Laribacter hongkongensis species 168471 0 1 0 568394 genus 2 8 792 Pseudogulbenkiania 1 784 1 2642558 no rank 0 1 0 species 748280 Pseudogulbenkiania sp. NH8B 784 722 Jeongeupia 1 genus 885864 0 2 10 2619593 no rank 0 1 712 1 0 1906741 species Jeongeupia sp. USM3 712 90153 no rank 0 4 3803 genus 535 0 4 72 3803 Chromobacterium 1 1 species 1108595 0 Chromobacterium vaccinii 1715 no rank 2641838 0 1 907 Chromobacterium sp. ATCC 53434 907 1 0 2059672 species 1 species 536 0 Chromobacterium violaceum 1109 0 no rank 119066 12 10790 50 1 0 genus 189384 0 189385 species 1 50 Candidatus Tremblaya princeps 1 Candidatus Profftella 1597 1 2 genus 1381133 0 1 0 species 669502 Candidatus Profftella armatura 1596 1 813 Candidatus Accumulibacter 4 0 327159 genus 2 1 0 327160 species Candidatus Accumulibacter phosphatis 809 33055 genus 0 6 37 7973 Kinetoplastibacterium 1 1571 Candidatus Kinetoplastibacterium oncopeltii 0 994696 species 1 1932 Candidatus Kinetoplastibacterium desouzaii species 994692 0 1 0 species 233181 1 1279 Kinetoplastibacterium blastocrithidii 1 0 994695 species Candidatus Kinetoplastibacterium galatii 1279 1875 Candidatus Kinetoplastibacterium crithidii 0 33056 species 1 357 1 0 1301080 genus 1160784 species 0 1 357 Candidatus Nasuia deltocephalinicola 323500 Burkholderiales 1 order 80840 0 235 2389 1 Alcaligenaceae 36357 112 44 0 family 506 1 720 Basilea 4 0 genus 1472344 2 1 1472345 species 0 Basilea psittacipulmonis 716 24 2 0 507 genus 1 Alcaligenes 4680 4656 Alcaligenes faecalis 0 511 species 1 1516 Advenella 1 0 genus 290425 3 19 Advenella kashmirensis 669 1 310575 species 0 828 Advenella mimigardefordensis 0 species 302406 1 158 6 genus 222 0 1 Achromobacter 9298 1 species 32002 0 Achromobacter denitrificans 1896 1 0 no rank 2626865 805 Achromobacter sp. AONIH1 805 1 species 1758194 0 Achromobacter insolitus 1037 1 217204 species 0 1 0 species 85698 Achromobacter xylosoxidans 3671 1731 Achromobacter spanius 0 217203 species 1 0 29574 genus 3 5 2396 Taylorella 1 1 29575 species 0 Taylorella equigenitalis 1335 Taylorella asinigenitalis 1056 1 species 84590 0 8 1921582 genus 0 2 1 748 Orrella 0 1851544 species 1 740 Orrella dioscoreae 1 Castellaniella 730 10 2 359336 genus 0 1 species 75697 0 Castellaniella defragrans 720 Pusillimonas 799 1 2 genus 305976 0 4 795 1 0 no rank 2640016 1 0 1007105 species Pusillimonas sp. T7-7 795 Paenalcaligenes 596 1 2 0 1100891 genus 4 592 Paenalcaligenes hominis 0 species 643674 1 517 genus 0 17 316 14275 Bordetella 1 1 species 1331258 0 Bordetella pseudohinzii 652 1 0 519 species Bordetella parapertussis 1085 1 123899 species 0 Bordetella trematum 660 949 Bordetella genomosp. 13 463040 species 0 1 1 0 no rank 2630031 687 Bordetella sp. H567 687 1 0 species 1697043 Bordetella pertussis 1117 1 0 species 520 Bordetella bronchialis 804 1 species 463025 0 0 species 521 1 457 Bordetella avium 1 463024 species 0 Bordetella genomosp. 6 966 1 0 1416806 species Bordetella genomosp. 8 1042 Bordetella petrii 878 1 0 species 94624 797 Bordetella hinzii 0 103855 species 1 Bordetella bronchiseptica 1863 1 518 species 0 1416803 species 0 1 684 Bordetella genomosp. 9 0 species 463014 1 846 Bordetella flabilis 1 0 35814 species Bordetella holmesii 472 2 0 90243 genus 5 Oligella 487 1 0 90245 species 1 482 Oligella urethralis 2 80841 no rank 0 947 1 species 1834205 0 Burkholderiales bacterium YL45 520 Burkholderiales bacterium GJ-E10 427 1 0 species 1469502 1 189446 Burkholderiaceae 580 family 119060 0 84 10783 Ralstonia 1 0 genus 48736 5 95 Ralstonia pickettii 1587 1 species 329 0 species 105219 0 1 1403 Ralstonia mannitolilytica Ralstonia insidiosa 929 1 0 190721 species 6769 Ralstonia solanacearum species 305 0 1 2305 41 genus 32008 0 1 Burkholderia 113438 41899 species 0 1 1388 Burkholderia plantarii 13203 11 0 2613784 no rank Burkholderia sp. PAMC 28687 804 1 species 1795874 0 1 1678678 species 0 Burkholderia sp. HB1 1468 952 Burkholderia sp. KJ006 species 416344 0 1 Burkholderia sp. 2002721687 1006 1 0 1468409 species 1 1097668 species 0 Burkholderia sp. YI23 1970 Burkholderia sp. CCGE1001 1173 1 640510 species 0 0 758796 species 1 1748 Burkholderia sp. RPE67 0 1740163 species 1 894 Burkholderia sp. Bp7605 Burkholderia sp. Bp5365 1055 1 1740162 species 0 1 1795043 species 0 Burkholderia sp. PAMC 26561 689 0 species 640512 1 1444 Burkholderia sp. CCGE1003 2644 Burkholderia gladioli species 28095 0 1 111527 species group 0 7 48589 4754 Burkholderia mallei 0 species 13373 1 1 0 species 57975 Burkholderia thailandensis 3885 Burkholderia pseudomallei 27950 1 28450 species 0 Burkholderia sp. MSMB0852 2689 1 0 species 1637841 1 0 species 1637831 Burkholderia sp. MSMB617WGS 2257 Burkholderia sp. MSMB0266 1899 1 species 1637837 0 1 0 342113 species Burkholderia oklahomensis 5155 19 0 species group 87882 42308 95486 species 0 1 5469 Burkholderia cenocepacia 881 Burkholderia pseudomultivorans 1207504 species 0 1 Burkholderia diffusa 970 1 0 488732 species 0 species 488729 1 968 Burkholderia metallica 488447 species 0 1 1486 Burkholderia contaminans 1 species 60552 0 Burkholderia vietnamiensis 2681 Burkholderia multivorans 2648 1 0 species 87883 0 species 152480 1 1749 Burkholderia ambifaria 1 0 95485 species Burkholderia stabilis 1647 species 152500 0 1 965 Burkholderia dolosa 4434 Burkholderia lata 0 species 482957 1 species 488446 0 1 3719 Burkholderia latens 6033 Burkholderia cepacia 0 292 species 1 [Pseudomonas] mesoacidophila 940 1 0 species 265293 1 0 101571 species Burkholderia ubonensis 3849 1 0 488731 species Burkholderia seminalis 1224 1 0 species 1503055 Burkholderia territorii 816 1 60550 species 0 Burkholderia pyrrocinia 764 0 1503054 species 1 1065 Burkholderia stagnalis 1 337 species 0 Burkholderia glumae 3001 Pandoraea 17176 1 10 0 93217 genus 112 Pandoraea vervacti 897 1 species 656178 0 881 Pandoraea apista 0 species 93218 1 738 Pandoraea thiooxydans 0 445709 species 1 Pandoraea sputorum 715 1 0 93222 species 656179 species 0 1 771 Pandoraea faecigallinarum 1985 Pandoraea norimbergensis 0 species 93219 1 Pandoraea pulmonicola 7545 1 93221 species 0 1770 Pandoraea pnomenusa 0 93220 species 1 1762 Pandoraea oxalativorans species 573737 0 1 1 genus 1827195 0 1597 0 species 758793 1 1597 Burkholderia sp. RPE64 818 genus 2571159 0 1 0 412963 species 1 818 Paraburkholderia rhizoxinica 12 genus 1822464 0 249 Paraburkholderia 20344 1 Paraburkholderia caribensis 3304 1 75105 species 0 1643 0 no rank 2615204 1 1 species 1926494 0 Paraburkholderia sp. SOS3 1643 species 311230 0 1 1248 Paraburkholderia terrae 1629 Paraburkholderia phymatum 0 species 148447 1 134537 species 0 1 1212 Paraburkholderia fungorum species 252970 0 1 1253 Paraburkholderia phenoliruptrix 0 species 2026199 1 1442 Paraburkholderia aromaticivorans 1 169430 species 0 Paraburkholderia hospita 1633 1 948107 species 0 Paraburkholderia sprentiae 1263 3766 Paraburkholderia phytofirmans 261302 species 0 1 1 species 36873 0 Paraburkholderia xenovorans 1702 329 0 106589 genus 9 1 22337 Cupriavidus Cupriavidus basilensis 3617 1 0 species 68895 Cupriavidus gilardii 1266 1 0 82541 species 5640 2640874 no rank 0 2 1 0 876364 species Cupriavidus sp. USMAA2-4 2972 2668 Cupriavidus sp. USMAHM13 species 1389192 0 1 6395 Cupriavidus metallidurans 119219 species 0 1 Cupriavidus sp. USMAA1020 2160 1 367825 species 0 0 species 248026 1 1104 Cupriavidus pinatubonensis 1 106590 species 0 Cupriavidus necator 1826 1 2373 Polynucleobacter 21 44013 genus 0 4 1 0 species 576610 Polynucleobacter necessarius 595 690 Polynucleobacter duraquae 0 species 1835254 1 0 species 576611 1 1067 Polynucleobacter asymbioticus 14082 0 no rank 224471 17 0 genus 32012 2 10 1023 Thiomonas 1 Thiomonas intermedia 1013 1 0 species 926 1 1333 Methylibium 15 316612 genus 0 2 1318 Methylibium petroleiphilum 0 105560 species 1 0 28067 genus 2 26 1295 Rubrivivax 1 Rubrivivax gelatinosus 1269 1 28068 species 0 1 Paucibacter 2121 22 2 genus 318147 0 2099 1 2642959 no rank 0 1 0 1768242 species Paucibacter sp. KCTC 42545 2099 22 2 65047 genus 0 1 Mitsuaria 1655 1 no rank 2648776 0 1633 Mitsuaria sp. 7 1633 1 0 species 1658665 0 genus 212743 2 19 1186 Rhizobacter 1 0 species 946333 1 1167 Rhizobacter gummiphilus 1 0 species 413882 [Polyangium] brachysporum 2408 2081 Roseateles 1 genus 93681 0 2 16 2065 Roseateles depolymerans species 76731 0 1 2 88 genus 0 26 Leptothrix 980 1 954 Leptothrix cholodnii 34029 species 0 1 398 58 0 80864 family 1 Comamonadaceae 55237 Hydrogenophaga 2668 1 4 47420 genus 0 13 824 Hydrogenophaga crassostreae species 1763535 0 1 2610897 no rank 0 2 1831 Hydrogenophaga sp. PBC 870 1 species 795665 0 0 1842537 species 1 961 Hydrogenophaga sp. RAC07 2 0 genus 2490452 1302 683 Comamonadaceae bacterium A1 1458425 species 0 1 619 Comamonadaceae bacterium B1 1458426 species 0 1 1 Limnohabitans 923 3 3 0 665874 genus 920 0 2626134 no rank 2 species 1678128 0 1 511 Limnohabitans sp. 63ED37-2 1 0 1678129 species Limnohabitans sp. 103DPR2 409 6 3 219181 genus 0 1 Ottowia 1421 556 1 2645081 no rank 0 1658672 species 0 1 556 Ottowia sp. oral taxon 894 859 Ottowia sp. KADR8-3 0 2109914 species 1 Variovorax 13203 1 5 0 genus 34072 137 1 species 34073 0 Variovorax paradoxus 8732 2 no rank 663243 0 3190 species 2126319 0 1 1418 Variovorax sp. PMC12 1772 Variovorax sp. PAMC 28711 1795631 species 0 1 436515 species 0 1 1144 Variovorax boronicumulans 1 0 genus 1436289 964 Candidatus Symbiobacter mobilis 964 1 0 1436290 species 0 364316 genus 2 12 2372 Verminephrobacter 1 0 species 364317 1 2360 Verminephrobacter eiseniae 1649468 genus 0 2 9 684 Melaminivora 1 675 1 2641902 no rank 0 Melaminivora sp. SC2-9 675 1 0 species 2109913 5 0 28065 genus 24 Rhodoferax 2839 1 1 0 species 1842727 Rhodoferax koreense 995 Rhodoferax ferrireducens 615 1 species 192843 0 Rhodoferax antarcticus 741 1 0 81479 species 0 species 1484693 1 464 Rhodoferax saidenbachensis 98 0 80865 genus 5 1 5894 Delftia 2 0 no rank 2613839 3180 1816 Delftia sp. Cs1-4 0 742013 species 1 1920191 species 0 1 1364 Delftia sp. HK171 1273 Delftia acidovorans 80866 species 0 1 1343 Delftia tsuruhatensis 0 species 180282 1 1 736 Diaphorobacter 1 0 genus 238749 2 735 Diaphorobacter polyhydroxybutyrativorans 0 species 1546149 1 0 genus 12916 9 139 6581 Acidovorax 1 598 Acidovorax ebreus 721785 species 0 1 4 0 2684926 no rank 3299 1 0 species 358220 Acidovorax sp. KKS102 689 1 232721 species 0 Acidovorax sp. JS42 525 Acidovorax sp. RAC01 742 1 species 1842533 0 1 1858609 species 0 Acidovorax sp. T1 1343 Acidovorax avenae 1152 1 0 80867 species Acidovorax sp. NA3 486 1 0 553814 species 1 0 80869 species Acidovorax citrulli 907 Alicycliphilus 997 1 2 0 201096 genus 3 994 Alicycliphilus denitrificans 0 179636 species 1 653 0 genus 2678886 1 species 2116657 0 1 653 Melaminivora sp. SC2-7 Comamonas 6396 1 4 283 genus 0 18 225992 species 0 1 2183 Comamonas kerstersii Comamonas serinivorans 2506 1 1082851 species 0 285 species 0 1 1689 Comamonas testosteroni genus 52972 0 3 19 5066 Polaromonas 1 1 0 species 216465 Polaromonas naphthalenivorans 1570 0 no rank 2638319 1 3477 3477 Polaromonas sp. JS666 species 296591 0 1 16 2 174951 genus 0 1 Ramlibacter 1557 94132 species 0 1 1541 Ramlibacter tataouinensis 2 2 0 genus 352450 1 Simplicispira 583 2109915 species 0 1 581 Simplicispira sp. SC1-8 25042 Oxalobacteraceae 1 0 family 75682 29 164 5389 Massilia 1 0 genus 149698 6 102 980 Massilia sp. B2 species 2045208 0 1 0 1141883 species 1 1171 Massilia putida 1134 Massilia sp. ZMN-3 0 2072590 species 1 no rank 2609279 0 2 2002 0 1678028 species 1 850 Massilia sp. NR 4-1 1152 Massilia sp. WG5 1707785 species 0 1 Herbaspirillum 8006 1 6 genus 963 0 63 1 species 964 0 Herbaspirillum seropedicae 1779 species 92645 0 1 1104 Herbaspirillum frisingense 836 no rank 2624150 0 1 Herbaspirillum sp. meg3 836 1 2025949 species 0 Herbaspirillum rubrisubalbicans 877 1 0 species 80842 0 species 341045 1 3347 Herbaspirillum hiltneri 72 4 202907 genus 0 1 Collimonas 4013 1143 Collimonas pratensis species 279113 0 1 279058 species 0 1 1598 Collimonas arenae 1 0 species 158899 Collimonas fungivorans 1200 2 846 genus 0 2 1 439 Oxalobacter Oxalobacter formigenes 437 1 species 847 0 1 5842 Janthinobacterium 73 genus 29580 0 7 882 Janthinobacterium agaricidamnosum 0 55508 species 1 1423 Janthinobacterium svalbardensis 368607 species 0 1 3464 no rank 2610881 0 4 1 species 1644131 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1216 0 species 1938606 1 946 Janthinobacterium sp. LM6 566 Janthinobacterium sp. Marseille species 375286 0 1 1 0 1236179 species Janthinobacterium sp. B9-8 736 13 3 0 303379 genus 1 Herminiimonas 1189 1 1809410 species 0 Herminiimonas arsenitoxidans 582 0 204773 species 1 594 Herminiimonas arsenicoxydans 93 206389 order 0 22 1 10168 Rhodocyclales 12 0 family 2008794 116 Zoogloeaceae 7184 1 3386 Azoarcus 1 12960 genus 0 5 73 1 0 species 2067960 Azoarcus sp. SY39 671 0 no rank 2629479 2 1892 1 0 748247 species Azoarcus sp. KH32C 818 1 0 species 198107 Azoarcus sp. CIB 1074 750 Azoarcus olearius 0 species 418699 1 3682 Thauera 1 0 33057 genus 6 41 0 1134435 species 1 634 Thauera humireducens 686 Thauera aromatica 0 species 59405 1 1 96773 species 0 Thauera chlorobenzoica 698 1623 2 0 no rank 2609274 species 2005884 0 1 754 Thauera sp. K11 0 85643 species 1 869 Thauera sp. MZ1T Azonexaceae 901 1 3 2008795 family 0 4 1 Dechloromonas 897 11 2 73029 genus 0 Dechloromonas aromatica 886 1 0 species 259537 family 75787 0 6 30 1990 Rhodocyclaceae 1 1 Aromatoleum 873 9 2 0 551759 genus Aromatoleum aromaticum 864 1 species 551760 0 658 Azospira 1 146937 genus 0 2 14 0 146939 species 1 644 Azospira oryzae 1 0 75788 no rank 429 0 1898103 species 1 429 Rhodocyclaceae bacterium 5 0 class 580370 889 0 order 580371 5 17 889 Mariprofundales 1 872 Mariprofundaceae 1 family 580372 0 4 11 genus 377315 0 3 16 861 Mariprofundus 1 473 Mariprofundus aestuarium 0 species 1921086 1 species 1921087 0 1 372 Mariprofundus ferrinatatus 1 Alphaproteobacteria 817768 687 573 0 28211 class 0 82117 no rank 8 9524 46 2 991903 genus 0 1 Polymorphum 1294 1248 Polymorphum gilvum 991904 species 0 1 Phreatobacter 1087 1 2 genus 1632780 0 24 1 0 1868589 species Phreatobacter sp. S-12 1063 Micavibrio 1035 1 2 0 genus 213485 22 0 349221 species 1 1013 Micavibrio aeruginosavorus 2 clade 62654 0 6108 2 767891 genus 0 69 Candidatus Puniceispirillum 6108 1 6039 Candidatus Puniceispirillum marinum 0 species 767892 1 6 2800060 order 0 4268 58 69657 family 0 6 1 4268 Hyphomonadaceae 0 genus 2723 2 23 2002 Hirschia 1 1979 Hirschia baltica 2724 species 0 1 Hyphomonas 2208 1 3 85 genus 0 93 1 0 no rank 2630699 1413 1413 Hyphomonas sp. Mor2 1906738 species 0 1 1 0 species 81032 Hyphomonas neptunium 702 45 9 0 order 54526 1 Pelagibacterales 328528 304748 Pelagibacteraceae 1 1655514 family 0 6 136 Candidatus Pelagibacter 145384 1 3 0 genus 198251 31 0 198252 species 1 121791 Candidatus Pelagibacter ubique 2647897 no rank 0 1 23562 species 1002672 0 1 23562 Candidatus Pelagibacter sp. IMCC9063 0 no rank 1655516 2 159228 1 744985 species 0 alpha proteobacterium HIMB59 20562 alpha proteobacterium HIMB5 138666 1 0 species 859653 23735 Candidatus Fonsibacter 1 genus 2045213 0 2 53 Candidatus Fonsibacter ubiquis 23682 1 species 1925548 0 2800059 order 0 2 1069 1069 2 family 2800061 0 2 genus 74317 0 20 Maricaulis 1069 1 1049 Maricaulis maris species 74318 0 1 60061 Rhodospirillales 1 204441 order 0 67 499 434 family 41295 0 31 1 37221 Rhodospirillaceae 6845 Magnetospirillum 1 0 13134 genus 5 210 Magnetospirillum magneticum 1698 1 0 species 84159 1 0 species 55518 Magnetospirillum gryphiswaldense 1751 2 no rank 2617991 0 3186 1643 Magnetospirillum sp. ME-1 0 species 1639348 1 1 0 1663591 species Magnetospirillum sp. XM-1 1543 2 0 genus 1263978 3 Candidatus Endolissoclinum 6958 1 Candidatus Endolissoclinum faulkneri 6955 1 0 1263979 species 1 714 Haematospirillum 6 genus 1804663 0 2 species 1549855 0 1 708 Haematospirillum jordaniae 1 9586 Azospirillum 211 0 191 genus 5 Azospirillum humicireducens 1031 1 species 1226968 0 species 528244 0 1 2127 Azospirillum thiophilum Azospirillum lipoferum 3274 1 0 species 193 0 192 species 1 2943 Azospirillum brasilense 168934 genus 0 3 36 3033 Thalassospira 1 Thalassospira sp. CSC3H3 1387 1 2048283 species 0 1 0 species 220697 Thalassospira xiamenensis 1610 genus 1543704 0 2 9 1227 Niveispirillum 1 1218 Niveispirillum cyanobacteriorum 0 1612173 species 1 1 Rhodospirillum 2889 35 3 0 1081 genus Rhodospirillum centenum 1675 1 34018 species 0 1 1085 species 0 Rhodospirillum rubrum 1179 1182780 genus 0 2 21 1112 Magnetospira 1 0 no rank 2685734 1 1091 Magnetospira sp. QH-2 1091 1 0 species 1288970 1663 Nitrospirillum 1 genus 1543705 0 2 15 0 28077 species 1 1648 Nitrospirillum amazonense 1911 Tistrella 1 0 genus 171436 2 30 Tistrella mobilis 1881 1 0 species 171437 7 1612157 genus 0 2 1 849 Pararhodospirillum 1 1084 species 0 Pararhodospirillum photometricum 842 Acetobacteraceae 22341 1 35 433 family 0 153 Kozakia 585 1 2 genus 153497 0 7 1 0 153496 species Kozakia baliensis 578 4 2 0 genus 89583 1 Gluconacetobacter 826 Gluconacetobacter diazotrophicus 822 1 0 species 33996 4 320496 genus 0 2 1 528 Neoasaia 320497 species 0 1 524 Neoasaia chiangmaiensis 10 0 364409 genus 2 1 1819 Granulibacter 1809 Granulibacter bethesdensis 364410 species 0 1 Parasaccharibacter 582 1 2 0 1602345 genus 5 1 1510841 species 0 Parasaccharibacter apium 577 1 3642 Komagataeibacter 71 1434011 genus 0 5 808 Komagataeibacter medellinensis 0 1177712 species 1 0 33995 species 1 559 Komagataeibacter europaeus 1 0 species 28448 Komagataeibacter xylinus 1128 1 0 species 265960 Komagataeibacter nataicola 1076 0 441 genus 3 27 1335 Gluconobacter 1 400 Gluconobacter albidus 318683 species 0 1 Gluconobacter oxydans 908 1 species 442 0 61 genus 125216 0 3 1 2656 Roseomonas 1 0 no rank 2617492 1371 Roseomonas sp. FDAARGOS_362 1371 1 species 2018065 0 1 0 species 257708 Roseomonas gilardii 1224 8 0 434 genus 108 Acetobacter 7607 1 151157 subgenus 0 1 570 1 0 435 species Acetobacter aceti 570 Acetobacter persici 669 1 0 species 1076596 Acetobacter tropicalis 1207 1 species 104102 0 1 0 446692 species Acetobacter senegalensis 649 3266 Acetobacter pasteurianus 0 438 species 1 533 Acetobacter pomorum 65959 species 0 1 0 1633874 species 1 605 Acetobacter oryzifermentans 11 0 genus 91914 2 1 577 Asaia 1 species 91915 0 Asaia bogorensis 566 Acidiphilium 2031 1 3 0 genus 522 46 0 species 524 1 930 Acidiphilium cryptum 1055 Acidiphilium multivorum species 62140 0 1 1 902 Magnetococcales 4 0 1191478 order 3 898 2 family 1191479 0 Magnetococcus 898 1 2 162171 genus 0 7 Magnetococcus marinus 891 1 1124597 species 0 1 Parvularculales 1688 10 4 0 order 255473 1 Parvularculaceae 1678 16 3 0 family 255474 1 Parvularcula 1662 21 2 0 208215 genus Parvularcula bermudensis 1641 1 208216 species 0 1 Holosporales 4630 6 9 0 order 1921002 1 1609 Holosporaceae 3 44746 family 0 2 1606 1 0 204454 no rank 1606 endosymbiont of Acanthamoeba sp. UWC8 86106 species 0 1 3 0 1777752 family 12 Candidatus Paracaedibacteraceae 1276 1 2 1521255 genus 0 6 Candidatus Paracaedibacter 1264 1 0 91604 species 1 1258 Candidatus Paracaedibacter acanthamoebae Caedimonadaceae 1739 1 3 family 2100208 0 5 1509243 genus 0 2 5 1734 Candidatus Nucleicultrix 1 1729 Candidatus Nucleicultrix amoebiphila species 1509244 0 1 1 60526 Sphingomonadales 258 order 204457 0 82 59 0 family 41297 489 Sphingomonadaceae 48703 1 10 165697 genus 0 172 Sphingopyxis 7999 1 4 no rank 2614943 0 3788 0 292913 species 1 718 Sphingopyxis sp. 113P3 0 species 1357916 1 949 Sphingopyxis sp. QXT-31 0 1866325 species 1 797 Sphingopyxis sp. MG Sphingopyxis sp. LPB0140 1324 1 0 species 1913578 703 Sphingopyxis terrae 33052 species 0 1 species 267128 0 1 788 Sphingopyxis granuli 1 0 33050 species Sphingopyxis macrogoltabida 1259 584 Sphingopyxis alaskensis species 117207 0 1 1 0 1515612 species Sphingopyxis fribergensis 705 730 0 genus 2709685 1 730 Sphingorhabdus flavimaris species 266812 0 1 1 Novosphingobium 3060 108 5 0 165696 genus 771 1 2644732 no rank 0 1 702113 species 0 Novosphingobium sp. PP1Y 771 0 species 158500 1 901 Novosphingobium resinovorum Novosphingobium aromaticivorans 550 1 0 48935 species 1 205844 species 0 Novosphingobium pentaromativorans 730 Blastomonas 944 1 2 genus 150203 0 13 1 0 no rank 2626550 931 Blastomonas sp. RAC04 931 1 1842535 species 0 1 19887 Sphingomonas 240 genus 13687 0 15 1560345 species 0 1 841 Sphingomonas panacis 0 196159 no rank 6 11810 species 1327635 0 1 688 Sphingomonas sp. Cra20 Sphingomonas sp. NIC1 634 1 0 species 1961362 1938607 species 0 1 638 Sphingomonas sp. LM7 1 0 species 1030157 Sphingomonas sp. KC8 698 1 species 745310 0 Sphingomonas sp. MM-1 776 1 species 1390395 0 Sphingomonas sp. LK11 8376 1 397260 species 0 Sphingomonas sanxanigenens 1477 1 Sphingomonas wittichii 2510 1288 2 species 160791 0 Sphingomonas sp. DC-6 1222 1 strain 1283312 0 721 Sphingomonas taxi 0 1549858 species 1 Sphingomonas hengshuiensis 775 1 species 1609977 0 Sphingomonas melonis 726 1 0 species 152682 787 Sphingomonas koreensis 0 species 93064 1 368 15 0 genus 165695 1 Sphingobium 9977 0 species 332056 1 713 Sphingobium japonicum Sphingobium indicum 638 1 0 species 332055 Sphingobium yanoikuyae 1438 1 13690 species 0 0 species 76947 1 514 Sphingobium herbicidovorans 1 0 species 120107 Sphingobium cloacae 570 1 0 1332080 species Sphingobium baderi 516 Sphingobium hydrophobicum 642 1 1673076 species 0 614 Sphingobium chlorophenolicum 0 species 46429 1 6 0 no rank 2611147 3964 0 species 1843368 1 707 Sphingobium sp. RAC03 1 species 1315974 0 Sphingobium sp. TKS 762 Sphingobium sp. SYK-6 758 1 0 species 627192 0 species 1855519 1 470 Sphingobium sp. EP60837 587 Sphingobium sp. MI1205 species 407020 0 1 680 Sphingobium sp. YBL2 0 species 484429 1 1774 Zymomonas 1 541 genus 0 2 8 0 542 species 1 1766 Zymomonas mobilis 792 1 0 genus 2685927 792 Sphingomonas sp. JJ-A5 0 species 1921510 1 1 Sphingorhabdus 1492 52 3 genus 1434046 0 1440 2 0 no rank 2614947 Sphingorhabdus sp. YGSMI21 748 1 species 2077182 0 1 0 species 1806885 Sphingorhabdus sp. M41 692 Rhizorhabdus 916 1 2 genus 1649486 0 5 1 0 species 1850238 Rhizorhabdus dicambivorans 911 1 643 Citromicrobium 12 72173 genus 0 2 0 no rank 2630544 1 631 1 0 species 1634516 Citromicrobium sp. JL477 631 1 Erythrobacteraceae 11565 166 22 0 335929 family 0 genus 2800682 1 620 Altererythrobacter namhicola 620 1 0 645517 species 931 2 genus 1855416 0 385 Erythrobacter seohaensis 266951 species 0 1 Erythrobacter flavus 546 1 0 species 192812 209 0 361177 genus 4 1 1636 Altererythrobacter 501 Altererythrobacter atlanticus 0 1267766 species 1 Altererythrobacter ishigakiensis 464 1 species 476157 0 1 0 species 361183 Altererythrobacter epoxidivorans 462 2 0 2800681 genus 2179 1 species 1648404 0 Erythrobacter atlanticus 1226 0 species 502682 1 953 Erythrobacter gangjinensis 0 2800686 genus 2 814 390 Altererythrobacter mangrovi 0 species 1982042 1 species 692370 0 1 424 Altererythrobacter dongtanensis 1260 Croceicoccus 1 0 1295327 genus 3 28 520 Croceicoccus naphthovorans species 1348774 0 1 450378 species 0 1 712 Croceicoccus marinus 462 1 genus 2800685 0 1 species 543877 0 Altererythrobacter marensis 462 6 2800788 no rank 0 3497 Porphyrobacter 1503 1 3 0 genus 1111 108 2683265 no rank 0 2 1395 1896196 species 0 1 677 Porphyrobacter sp. LM 6 1 0 species 2023229 Porphyrobacter HT-58-2 718 Erythrobacter 1994 1 3 0 1041 genus 220 1 species 1112 0 Porphyrobacter neustonensis 591 1 0 39960 species Erythrobacter litoralis 1183 281 0 204455 order 94 1 80054 Rhodobacterales 1180 family 31989 0 93 1 79773 Rhodobacteraceae 0 genus 2433 3 23 2460 Roseobacter 1 1245 Roseobacter denitrificans 0 species 2434 1 Roseobacter litoralis 1192 1 species 42443 0 Loktanella 4 1 genus 245186 0 2 genus 74030 0 8 Roseovarius 1126 1 215743 species 0 1 1118 Roseovarius mucosus 12 2 367771 genus 0 1 Marinovum 1512 1 0 species 42444 Marinovum algicola 1500 1326 1 0 genus 2211641 Loktanella vestfoldensis 1326 1 0 species 245188 928 1649279 genus 0 1 928 Ruegeria mobilis 0 species 379347 1 1149 Dinoroseobacter 1 genus 309512 0 2 10 Dinoroseobacter shibae 1139 1 0 215813 species 4 0 genus 53945 43 Octadecabacter 4042 1 1326 Octadecabacter arcticus 53946 species 0 1 1879 Octadecabacter antarcticus 0 species 1217908 1 794 Octadecabacter temperatus 0 species 1458307 1 22 0 227873 genus 2 1 1037 Pannonibacter 1 121719 species 0 Pannonibacter phragmitetus 1015 1 0 genus 436357 Thalassococcus 5 1 1109 Antarctobacter 13 0 74032 genus 2 Antarctobacter heliothermus 1096 1 74033 species 0 29 5 875170 genus 0 1 Celeribacter 5706 Celeribacter marinus 956 1 1397108 species 0 1 0 1758178 species Celeribacter ethanolicus 841 species 1208324 0 1 1790 Celeribacter indicus Celeribacter manganoxidans 2090 1 species 1411902 0 57 4 0 genus 34008 1 Rhodovulum 4411 2308 0 2631432 no rank 2 Rhodovulum sp. P5 1141 1 1564506 species 0 1167 Rhodovulum sp. MB263 species 308754 0 1 2046 Rhodovulum sulfidophilum 0 35806 species 1 2543 2 0 263377 genus 1355 0 2640570 no rank 1 Yangia sp. CCB-MM3 1355 1 0 1792508 species 1 1229727 species 0 Thiobacimonas profunda 1188 93 0 478070 genus 4 1 3593 Labrenzia 2648686 no rank 0 2 2267 1 0 species 2021862 Labrenzia sp. VG12 1121 1674922 species 0 1 1146 Labrenzia sp. CP4 1 187304 species 0 Labrenzia aggregata 1233 12 2 0 188905 genus 1 Jannaschia 1012 1000 1 0 2645469 no rank 0 290400 species 1 1000 Jannaschia sp. CCS1 1 2468 Ruegeria 26 97050 genus 0 3 882 1 0 2625375 no rank Ruegeria sp. TM1040 882 1 0 292414 species 1 0 89184 species Ruegeria pomeroyi 1560 Sagittula 1163 1 2 0 58842 genus 2 1161 no rank 2624628 0 1 Sagittula sp. P11 1161 1 0 2009329 species 1516 Pelagibaca 1 0 360528 genus 2 8 1508 Pelagibaca abyssi 0 species 1250539 1 783 Thioclava 1 0 genus 285107 2 9 Thioclava nitratireducens 774 1 0 species 1915078 Planktomarina 1788 1 2 0 genus 1284657 1 species 1284658 0 1 1787 Planktomarina temperata 1 Paracoccus 8300 134 9 0 265 genus 0 species 34004 1 894 Paracoccus aminovorans 797 Paracoccus contaminans species 1945662 0 1 2065379 species 0 1 960 Paracoccus sp. CBA4604 1191 1 0 246570 no rank Paracoccus sp. BM15 1191 1 0 1529068 species 833 Paracoccus aminophilus 34003 species 0 1 1 species 147645 0 Paracoccus yeei 1351 1043 Paracoccus zhejiangensis 1077935 species 0 1 1 266 species 0 Paracoccus denitrificans 1097 7 0 genus 1579315 2 1 1018 Halocynthiibacter 1011 Halocynthiibacter arcticus 0 1579316 species 1 0 1609958 genus 2 5 1593 Confluentimicrobium 1 1588 0 2643318 no rank 1 0 species 1609966 1 1588 Confluentimicrobium sp. EMB200-NS6 92944 genus 0 3 7 1515 Ketogulonicigenium 1 1 0 species 92945 Ketogulonicigenium vulgare 757 Ketogulonicigenium robustum 751 1 species 92947 0 Rhodobacter 5582 1 5 1060 genus 0 82 1 0 1063 species Rhodobacter sphaeroides 2552 1975 2 0 no rank 196779 1 0 2033869 species Rhodobacter sp. CZR27 978 1 1850250 species 0 Rhodobacter sp. LPB0142 997 0 species 1061 1 973 Rhodobacter capsulatus 1 1120 Tateyamaria 2 0 genus 299261 2 1 0 species 299262 Tateyamaria omphalii 1118 690 Marivivens 1 0 genus 1759396 2 3 no rank 2622455 0 1 687 species 1920883 0 1 687 Marivivens sp. JLT3646 0 1097466 genus 2 13 1247 Defluviimonas 1 species 1335048 0 1 1234 Defluviimonas alba 6 2 0 genus 159345 1 Roseibacterium 1151 Roseibacterium elongatum 1145 1 species 159346 0 2 0 58840 no rank 1726 843 Rhodobacteraceae bacterium 0 1904441 species 1 Rhodobacteraceae bacterium QY30 883 1 0 2033435 species 1308 Leisingera 1 0 genus 191028 2 7 1301 Leisingera methylohalidivorans 0 133924 species 1 1 Phaeobacter 10053 105 5 302485 genus 0 Phaeobacter porticola 875 1 0 species 1844006 1 0 species 221822 Phaeobacter inhibens 4457 0 1580596 species 1 2106 Phaeobacter piscinae 0 species 60890 1 2510 Phaeobacter gallaeciensis 1 2487 Sulfitobacter 20 0 60136 genus 3 1 0 species 1402135 Sulfitobacter pseudonitzschiae 1268 1199 0 no rank 196795 1 0 species 1917485 1 1199 Sulfitobacter sp. AM1-D1 1 Rhodobaca 1122 9 2 genus 119541 0 1113 Rhodobaca barguzinensis 441209 species 0 1 43 20 204458 order 0 1 Caulobacterales 12966 Caulobacteraceae 12923 1 19 0 76892 family 214 7 41275 genus 0 141 Brevundimonas 4704 1 2463 no rank 2622653 0 3 1938605 species 0 1 1252 Brevundimonas sp. LM2 Brevundimonas sp. GW460-12-10-14-LB2 510 1 0 1827469 species 1 species 1532555 0 Brevundimonas sp. DS20 701 0 species 588932 1 582 Brevundimonas naejangsanensis 1 species 74313 0 Brevundimonas subvibrioides 973 545 Brevundimonas vesicularis species 41276 0 1 5711 Caulobacter 1 genus 75 0 6 114 1 0 no rank 2648921 1065 1065 Caulobacter sp. K31 0 366602 species 1 1825 Caulobacter vibrioides 0 155892 species 1 Caulobacter segnis 869 1 88688 species 0 1 69666 species 0 Caulobacter mirabilis 998 69395 species 0 1 840 Caulobacter henricii 1 Phenylobacterium 1026 16 2 0 genus 20 1010 Phenylobacterium zucineum 284016 species 0 1 0 81440 no rank 1 674 1 0 species 1759059 Caulobacteraceae bacterium OTSz_A_272 674 13 2 76890 genus 0 1 Asticcacaulis 594 Asticcacaulis excentricus 581 1 species 78587 0 46 order 766 0 56 1 54902 Rickettsiales 3665 1 0 no rank 1699067 Rickettsiales bacterium Ac37b 3665 1 species 1528098 0 Anaplasmataceae 26488 1 23 0 family 942 50 11371 0 tribe 952 8 0 953 genus 8 235 11371 Wolbachia 1 7 no rank 2640676 0 11136 0 100901 species 1 1286 Wolbachia endosymbiont of Onchocerca ochengi 0 163164 species 1 1364 Wolbachia endosymbiont of Drosophila melanogaster 1 0 80849 species Wolbachia endosymbiont of Brugia malayi 1640 Wolbachia endosymbiont of Onchocerca volvulus 1283 1 0 77551 species Wolbachia endosymbiont of Drosophila simulans 2957 1 0 77038 species Wolbachia endosymbiont of Cimex lectularius 1121 1 246273 species 0 1 species 66084 0 Wolbachia sp. wRi 1485 0 768 genus 4 14 1457 Anaplasma 1 1 0 769 species Anaplasma centrale 355 678 1 106179 species group 0 0 948 species 1 678 Anaplasma phagocytophilum 1 species 770 0 Anaplasma marginale 410 0 33993 genus 4 20 1887 Neorickettsia 1 1 950 species 0 Neorickettsia risticii 597 1 33994 species 0 Neorickettsia helminthoeca 661 1 0 951 species Neorickettsia sennetsu 609 11723 Ehrlichia 1 genus 943 0 6 98 2055 106181 no rank 0 1 391036 species 0 1 2055 Ehrlichia sp. HF 9570 4 106178 species group 0 945 species 0 1 2426 Ehrlichia chaffeensis 2128 Ehrlichia muris species 35795 0 1 1 species 944 0 Ehrlichia canis 2439 2577 Ehrlichia ruminantium 0 779 species 1 3 0 1328881 family 2 Candidatus Midichloriaceae 1642 1 36 2 genus 411566 0 1 Candidatus Midichloria 1640 1604 Candidatus Midichloria mitochondrii 234827 species 0 1 775 family 0 28 34 23061 Rickettsiaceae 1 25 33988 tribe 0 21351 23 genus 780 0 1642 Rickettsia 17973 1 6771 0 114277 species group 17 Rickettsia australis 1267 1 787 species 0 1 0 47589 species Rickettsia peacockii 532 species 781 0 1 136 Rickettsia conorii Rickettsia felis 1003 1 0 species 42862 1 species 1105106 0 Rickettsia philipii 114 1 species 33992 0 Rickettsia rhipicephali 281 215 Rickettsia massiliae 35791 species 0 1 189 Rickettsia japonica 0 35790 species 1 1 0 33989 species Rickettsia amblyommatis 385 0 species 35794 1 102 Rickettsia slovaca 257 Rickettsia heilongjiangensis 0 226665 species 1 Rickettsia akari 855 1 0 species 786 770 Rickettsia monacensis 0 109232 species 1 148 Rickettsia africae 0 species 35788 1 Rickettsia montanensis 180 1 0 species 33991 Rickettsia parkeri 189 1 0 35792 species 1 species 783 0 Rickettsia rickettsii 148 3712 species group 1129742 0 2 Rickettsia canadensis 1438 1 species 788 0 0 species 33990 1 2274 Rickettsia bellii 2 species group 114292 0 3919 785 species 0 1 1951 Rickettsia typhi 1968 Rickettsia prowazekii species 782 0 1 1929 1 0 114295 no rank Rickettsia endosymbiont of Bemisia tabaci 1929 1 0 species 337479 3 2 genus 69474 0 1 Orientia 3378 0 784 species 1 3375 Orientia tsutsugamushi 1 1676 Candidatus Phycorickettsia 6 0 2115980 genus 2 Candidatus Phycorickettsia trachydisci 1670 1 0 2115978 species 1 Rhizobiales 197963 1105 212 0 356 order Bradyrhizobiaceae 31598 1 26 family 41294 0 265 130 5 85413 genus 0 1 Bosea 4474 3047 3 no rank 2653178 0 1 0 species 1792307 Bosea sp. PAMC 26642 815 0 species 2015316 1 1127 Bosea sp. AS-1 1105 Bosea sp. RAC05 0 species 1842539 1 Bosea vaviloviae 1297 1 0 species 1526658 1 1615 Nitrobacter 20 0 911 genus 3 0 913 species 1 544 Nitrobacter winogradskyi 1051 Nitrobacter hamburgensis 912 species 0 1 1 Bradyrhizobium 16128 457 11 374 genus 0 2403 Bradyrhizobium diazoefficiens 1355477 species 0 1 Bradyrhizobium japonicum 2156 1 0 species 375 8465 0 2631580 no rank 6 1512 Bradyrhizobium sp. SK17 0 2057741 species 1 1302 Bradyrhizobium sp. CCGE-LA001 1223566 species 0 1 Bradyrhizobium sp. ORS 285 1081 1 0 species 115808 1 species 376 0 Bradyrhizobium sp. 1576 Bradyrhizobium sp. ORS 278 1662 1 species 114615 0 Bradyrhizobium sp. BTAi1 1332 1 0 288000 species 44255 species 0 1 1471 Bradyrhizobium oligotrophicum Bradyrhizobium icense 1176 1 0 species 1274631 675 Oligotropha 1 0 40136 genus 2 12 Oligotropha carboxidovorans 663 1 species 40137 0 0 genus 1649510 2 17 942 Variibacter 1 0 species 1333996 1 925 Variibacter gotjawalensis 1 Rhodopseudomonas 7499 92 2 genus 1073 0 0 1076 species 1 7407 Rhodopseudomonas palustris 0 119045 family 15 69 18268 Methylobacteriaceae 1 1 Methylobacterium 9448 344 9 genus 407 0 270351 species 0 1 1255 Methylobacterium aquaticum Methylobacterium radiotolerans 1191 1 31998 species 0 3 no rank 2615210 0 3369 0 species 1479019 1 1008 Methylobacterium sp. C1 Methylobacterium sp. 4-46 1523 1 species 426117 0 0 925818 species 1 838 Methylobacterium sp. AMS5 1 0 334852 species Methylobacterium oryzae 898 Methylobacterium nodulans 1446 1 0 species 114616 418223 species 0 1 945 Methylobacterium phyllosphaerae 7599 genus 2282523 0 3 Methylobacterium zatmanii 884 1 29429 species 0 Methylobacterium populi 1777 1 0 species 223967 1 0 species 408 Methylobacterium extorquens 4938 1152 Microvirga 1 0 genus 186650 2 34 Microvirga ossetica 1118 1 0 species 1882682 3695 0 no rank 119042 6 1 Hartmannibacter 1689 15 2 0 1572860 genus Hartmannibacter diazotrophicus 1674 1 species 1482074 0 1 954 Methyloceanibacter 79 1484898 genus 0 2 0 species 1384459 1 875 Methyloceanibacter caenitepidi Pseudorhodoplanes 1052 1 2 0 genus 1734920 30 Pseudorhodoplanes sinuspersici 1022 1 species 1235591 0 1 1247 Rhodobiaceae 9 119043 family 0 3 0 256616 genus 2 38 1238 Parvibaculum 1 1 species 256618 0 Parvibaculum lavamentivorans 1200 Chelatococcaceae 2425 1 4 0 family 2036754 26 2399 Chelatococcus 1 genus 28209 0 3 90 Chelatococcus daeguensis 1029 1 0 species 444444 1 2638111 no rank 0 1280 1 1702325 species 0 Chelatococcus sp. CO-6 1280 Beijerinckiaceae 2934 1 5 family 45404 0 13 0 120652 genus 2 15 672 Methylocella 1 species 199596 0 1 657 Methylocella silvestris 1 2249 Beijerinckia 12 532 genus 0 2 species 533 0 1 2237 Beijerinckia indica 1 Xanthobacteraceae 4017 65 7 335928 family 0 17 0 279 genus 2 1 1710 Xanthobacter Xanthobacter autotrophicus 1693 1 species 280 0 2 152053 genus 0 38 Starkeya 1243 1 1 0 921 species Starkeya novella 1205 1 999 Azorhizobium 14 0 genus 6 2 1 7 species 0 Azorhizobium caulinodans 985 24 6 0 family 31993 1 Methylocystaceae 2757 Methylosinus 1028 1 2 425 genus 0 12 0 species 426 1 1016 Methylosinus trichosporium Methylocystis 1705 1 3 0 genus 133 62 868 Methylocystis bryophila species 655015 0 1 1 no rank 2625913 0 775 187303 species 0 1 775 Methylocystis sp. SC2 1 11688 Hyphomicrobiaceae 91 0 45401 family 19 1 3085 Devosia 74 0 genus 46913 4 3011 0 no rank 196773 3 1089 Devosia sp. H5989 0 1643450 species 1 1 0 1736675 species Devosia sp. A16 1216 1 2083786 species 0 Devosia sp. I507 706 33 2 59282 genus 0 1 Blastochloris 1024 1079 species 0 1 991 Blastochloris viridis 1 Hyphomicrobium 3771 79 4 0 81 genus 0 1427356 species 1 681 Hyphomicrobium nitrativorans 2619925 no rank 0 1 1935 Hyphomicrobium sp. MC1 1935 1 0 species 717785 1076 Hyphomicrobium denitrificans species 53399 0 1 0 genus 119044 2 19 794 Filomicrobium 1 775 Candidatus Filomicrobium marinum 0 1608628 species 1 1 1492 Rhodoplanes 31 0 29407 genus 2 1461 1 0 no rank 2619116 Rhodoplanes sp. Z2-YC6860 1461 1 0 674703 species 2 0 genus 1068 19 Rhodomicrobium 717 1 Rhodomicrobium vannielii 698 1 species 1069 0 1 Pelagibacterium 714 31 2 1082930 genus 0 683 Pelagibacterium halotolerans 0 531813 species 1 18 20 0 family 118882 1 Brucellaceae 9050 528 genus 0 5 59 5696 Ochrobactrum 1 Ochrobactrum pituitosum 2155 1 species 571256 0 1 0 419475 species Ochrobactrum pseudogrignonense 1770 714 Ochrobactrum anthropi species 529 0 1 Ochrobactrum sp. A44 998 1 271865 species 0 0 234 genus 14 850 3336 Brucella 1 no rank 2632610 0 4 775 0 1149952 species 1 236 Brucella sp. 09RB8471 1891098 species 0 1 70 Brucella sp. 2002734562 0 species 1885919 1 218 Brucella sp. 141012304 1 1844051 species 0 Brucella sp. 09RB8910 251 0 235 species 1 165 Brucella abortus Brucella pinnipedialis 164 1 0 species 120576 1 0 species 29461 Brucella suis 555 Brucella ceti 145 1 120577 species 0 1 0 36855 species Brucella canis 179 136 Brucella melitensis species 29459 0 1 1 0 444163 species Brucella microti 119 1 species 236 0 Brucella ovis 43 Brucella vulpis 205 1 0 981386 species 96 20 0 family 69277 1 Phyllobacteriaceae 17636 15 2 genus 245876 0 1 Nitratireductor 904 1 0 species 472175 Nitratireductor basaltis 889 30 0 274591 genus 2 1 1392 Hoeflea 1 2614931 no rank 0 1362 Hoeflea sp. IMCC20628 1362 1 1620421 species 0 324 9 0 genus 68287 1 Mesorhizobium 12422 1 536018 species 0 Mesorhizobium australicum 1271 Mesorhizobium japonicum 1338 1 0 species 2066070 1 381 species 0 Mesorhizobium loti 1526 1 71433 species 0 Mesorhizobium amorphae 1124 0 species 39645 1 2261 Mesorhizobium ciceri 1374 Mesorhizobium opportunistum 0 species 593909 1 1 no rank 325217 0 1950 1950 Mesorhizobium sp. WSM1497 0 species 278153 1 0 1670800 species 1 1254 Mesorhizobium sp. B7 1077 Aminobacter 1 0 31988 genus 2 16 1061 Aminobacter aminovorans species 83263 0 1 Phyllobacterium 956 1 2 0 genus 28100 8 948 Phyllobacterium zundukense 0 species 1867719 1 1 789 Chelativorans 62 449972 genus 0 2 727 0 no rank 2643807 1 1 0 266779 species Chelativorans sp. BNC1 727 1 54927 Rhizobiaceae 277 0 family 82115 55 12363 10 227292 no rank 0 16 3 106591 genus 0 1 Ensifer 1752 777 Ensifer sojae 716925 species 0 1 Ensifer adhaerens 959 1 0 species 106592 165 0 28105 genus 7 1 10611 Sinorhizobium 2613772 no rank 0 2 2060 1 0 species 794846 Sinorhizobium sp. CCBAU 05631 944 1 0 1842534 species Sinorhizobium sp. RAC02 1116 3362 1 0 663276 species group 3362 Sinorhizobium fredii 0 species 380 1 0 194963 species 1 994 Sinorhizobium americanum 1007 Sinorhizobium medicae 0 species 110321 1 1 0 382 species Sinorhizobium meliloti 3023 36 0 no rank 227290 32331 27 0 genus 379 1202 Rhizobium 22038 1 2650 Rhizobium phaseoli species 396 0 1 0 species 398 1 647 Rhizobium tropici Rhizobium gallicum 1245 1 0 species 56730 8636 21 2613769 no rank 0 0 species 1914541 1 608 Rhizobium sp. Y9 species 1571470 0 1 805 Rhizobium sp. ACO-34A 691 Rhizobium sp. IE4771 1301032 species 0 1 1 2028343 species 0 Rhizobium sp. 10195 729 0 species 1703969 1 749 Rhizobium sp. N324 1 0 species 2020311 Rhizobium sp. Kim5 609 Rhizobium sp. N113 7 1 0 species 1703960 2 Rhizobium sp. N6212 0 1703965 species 1 615 Rhizobium sp. NT-26 0 1125847 species 1 0 species 2020312 1 623 Rhizobium sp. CIAT894 Rhizobium sp. NXC24 819 1 species 2048897 0 1 0 species 1703968 Rhizobium sp. N871 6 species 1703967 0 1 7 Rhizobium sp. N741 Rhizobium sp. N731 164 1 0 1703966 species 539 Rhizobium sp. NXC14 0 species 1981173 1 7 Rhizobium sp. N1341 1703962 species 0 1 Rhizobium sp. S41 624 1 0 1869170 species 1703964 species 0 1 2 Rhizobium sp. N621 190 Rhizobium sp. TAL182 2020313 species 0 1 1 0 species 1703961 Rhizobium sp. N1314 164 0 424182 species 1 676 Rhizobium sp. IRBG74 0 29449 species 1 2569 Rhizobium etli 1 species 384 0 Rhizobium leguminosarum 5089 13 2 0 1525371 genus 1 Neorhizobium 1299 Neorhizobium galegae 1286 1 0 399 species 1 Agrobacterium 8994 134 7 0 genus 357 1849 0 2632611 no rank 2 1224 Agrobacterium sp. RAC06 0 1842536 species 1 species 861208 0 1 625 Agrobacterium sp. H13-3 690 Agrobacterium rhizogenes 359 species 0 1 5563 species group 1183400 0 2 1 0 species 358 Agrobacterium tumefaciens 4846 1 0 species 1176649 Agrobacterium fabrum 717 373 species 0 1 758 Agrobacterium vitis 1 Liberibacter 8584 92 6 34019 genus 0 1 0 309868 species Candidatus Liberibacter americanus 1836 Liberibacter crescens 2278 1 0 1273132 species Candidatus Liberibacter asiaticus 1292 1 0 34021 species 1577 Candidatus Liberibacter solanacearum species 556287 0 1 1509 Candidatus Liberibacter africanus 34020 species 0 1 2 0 323620 genus 18 Shinella 1372 1 1 0 2643062 no rank 1354 879274 species 0 1 1354 Shinella sp. HZN7 1 Aurantimonadaceae 4131 13 7 0 255475 family 77 0 293088 genus 4 1 3136 Martelella 1131 2629616 no rank 0 1 Martelella sp. AD-3 1131 1 0 species 686597 1 species 1486262 0 Martelella endophytica 762 species 293089 0 1 1166 Martelella mediterranea 1 982 Aureimonas 29 genus 414371 0 2 953 no rank 2615206 0 1 0 1349819 species 1 953 Aureimonas sp. AU20 47 0 family 772 18 1 32485 Bartonellaceae 32438 Bartonella 1 0 genus 773 17 627 1 species 38323 0 Bartonella henselae 1906 Bartonella bacilliformis 2141 1 species 774 0 1777 Bartonella apis 0 1686310 species 1 Bartonella clarridgeiae 2037 1 species 56426 0 1896 Bartonella ancashensis 0 1318743 species 1 1263 Bartonella australis 388640 species 0 1 2100 Bartonella grahamii 0 33045 species 1 12905 2645622 no rank 0 6 1 0 1933907 species Bartonella sp. JB63 2076 Bartonella sp. Raccoon60 2205 1 1933912 species 0 1933904 species 0 1 2083 Bartonella sp. WD16.2 2077 Bartonella sp. JB15 0 species 1933906 1 Bartonella sp. A1379B 2073 1 species 1933910 0 2391 Bartonella sp. 1-1C species 515256 0 1 Bartonella tribocorum 2072 1 85701 species 0 803 species 0 1 1762 Bartonella quintana 1 0 species 33047 Bartonella vinsonii 1952 0 class 1553900 12 10 6040 Oligoflexia 1 14 0 213481 order 5 1 2871 Bdellovibrionales family 213483 0 4 19 2857 Bdellovibrionaceae 1 15 genus 958 0 3 1 2838 Bdellovibrio 2013 Bdellovibrio bacteriovorus species 959 0 1 Bdellovibrio exovorus 810 1 species 453816 0 Bacteriovoracales 3159 1 6 order 2024979 0 11 Bacteriovoracaceae 953 1 3 0 263369 family 5 Bacteriovorax 948 1 2 genus 146784 0 3 945 Bacteriovorax stolpii 0 species 960 1 2195 2 0 family 1652132 1 2195 Halobacteriovorax 9 genus 1652133 0 2 0 species 97084 1 2186 Halobacteriovorax marinus 1 Gammaproteobacteria 1112523 2104 905 0 class 1236 1901 2 no rank 33811 0 1 1248727 species 0 endosymbiont of unidentified scaly snail isolate Monju 821 1 83406 species 0 gamma proteobacterium HdN1 1080 73 order 135619 0 150 Oceanospirillales 49151 1 0 family 135620 13 72 9659 Oceanospirillaceae 1 1469 Bacterioplanes 1 0 genus 1537406 2 2 1249553 species 0 1 1467 Bacterioplanes sanyensis 0 187492 genus 2 7 1178 Thalassolituus 1 Thalassolituus oleivorans 1171 1 0 species 187493 1145 Oleispira 1 genus 188907 0 2 11 1 188908 species 0 Oleispira antarctica 1134 Marinomonas 3719 1 4 0 28253 genus 16 1 0 196814 no rank 1535 1535 Marinomonas sp. MWYL1 0 400668 species 1 946 Marinomonas posidonica 0 species 936476 1 species 119864 0 1 1222 Marinomonas mediterranea 21 2 0 48075 genus 1 Marinobacterium 2076 0 species 1821621 1 2055 Marinobacterium aestuarii Oleiphilaceae 1716 1 3 family 191033 0 98 6 0 141450 genus 2 1 1618 Oleiphilus Oleiphilus messinensis 1612 1 species 141451 0 33 family 28256 0 170 Halomonadaceae 22417 1 1 2 0 42054 genus 1 Chromohalobacter 643 642 Chromohalobacter salexigens 0 158080 species 1 773 Halotalea 1 0 376488 genus 2 1 0 species 376489 1 772 Halotalea alkalilenta 2745 genus 0 15 169 12124 Halomonas 1 662 Halomonas chromatireducens 0 507626 species 1 1416 Halomonas beimenensis 475662 species 0 1 0 species 1178482 1 1541 Halomonas huangheensis 1 115561 species 0 Halomonas hydrothermalis 801 839 Halomonas aestuarii 1897729 species 0 1 Halomonas campaniensis 632 1 213554 species 0 no rank 2609666 0 8 6064 770 Halomonas sp. 'Soap Lake #7' 0 species 1962264 1 species 1504981 0 1 781 Halomonas sp. KO116 1 0 species 1949203 Halomonas sp. 'Soap Lake #6' 757 Halomonas sp. R57-5 754 1 0 species 1610576 550 Halomonas sp. GFAJ-1 0 1118153 species 1 0 species 1883416 1 771 Halomonas sp. 1513 1 species 1971364 0 Halomonas sp. GT 812 869 Halomonas sp. SF2003 0 species 2136172 1 1 Kushneria 1663 11 3 0 504090 genus 1 species 698828 0 Kushneria konosiri 1092 Kushneria marisflavi 560 1 species 157779 0 4956 6 114403 no rank 0 1 Candidatus Portiera 3000 39 2 genus 235572 0 1 0 species 91844 Candidatus Portiera aleyrodidarum 2961 1226 Candidatus Evansia 1 1495768 genus 0 2 7 1219 Candidatus Evansia muelleri 0 1495769 species 1 2 114185 genus 0 6 Candidatus Carsonella 730 1 Candidatus Carsonella ruddii 724 1 0 114186 species 1 921 Salinicola 8 404432 genus 0 2 0 species 1771309 1 913 Salinicola tamaricis 1 Cobetia 1167 1 2 0 genus 204286 1166 Cobetia marina 0 28258 species 1 Saccharospirillaceae 2756 1 5 0 255527 family 12 1 1567 Reinekea 5 genus 230494 0 2 1 1336806 species 0 Reinekea forsetii 1562 1445504 genus 0 2 11 1177 Gynuella 1 Gynuella sunshinyii 1166 1 0 species 1445505 family 224372 0 9 49 7733 Alcanivoracaceae 1 1 6616 Alcanivorax 215 genus 59753 0 6 Alcanivorax pacificus 1093 1 0 1306787 species 0 1094342 species 1 1012 Alcanivorax xenomutans 1 285091 species 0 Alcanivorax dieselolei 1039 Alcanivorax borkumensis 1712 1 species 59754 0 1545 2638842 no rank 0 1 1 0 1113728 species Alcanivorax sp. NBRC 101098 1545 1 1068 Ketobacter 32 0 2025617 genus 2 Ketobacter alkanivorans 1036 1 species 1917421 0 6 0 1920240 family 8 Kangiellaceae 3740 1 5 0 genus 261963 96 Kangiella 3732 1 1 species 261964 0 Kangiella koreensis 971 0 1561924 species 1 1007 Kangiella profundi Kangiella sediminilitoris 839 1 1144748 species 0 1 species 914150 0 Kangiella geojedonensis 819 1 980 Hahellaceae 3 0 family 224379 3 977 Hahella 1 158481 genus 0 2 25 Hahella chejuensis 952 1 0 species 158327 587 129 0 72274 order 1 Pseudomonadales 179945 1 Moraxellaceae 63334 143 42 468 family 0 45795 Acinetobacter 1 genus 469 0 25 493 1 species 106648 0 Acinetobacter bereziniae 1381 1 species 1789224 0 Acinetobacter larvae 1085 1 0 40215 species Acinetobacter junii 1773 Acinetobacter radioresistens 1023 1 species 40216 0 22117 5 species group 909768 0 7812 Acinetobacter baumannii species 470 0 1 0 species 48296 1 7881 Acinetobacter pittii Acinetobacter nosocomialis 2249 1 0 species 106654 1785128 species 0 1 1418 Acinetobacter lactucae Acinetobacter calcoaceticus 2757 1 species 471 0 202950 species 0 1 1197 1197 Acinetobacter sp. ADP1 0 62977 strain 1 7465 7 no rank 196816 0 1 1758189 species 0 Acinetobacter sp. ACNIH2 996 Acinetobacter sp. TGL-Y2 1213 1 0 species 1407071 1611 Acinetobacter sp. ACNIH1 species 1636603 0 1 751 Acinetobacter sp. LoGeW2-3 1808001 species 0 1 1 1608473 species 0 Acinetobacter sp. NCu2D-2 830 0 1646498 species 1 1052 Acinetobacter sp. TTH0-4 1012 Acinetobacter sp. SWBY1 0 2079596 species 1 1324350 species 0 1 1975 Acinetobacter equi 1593 Acinetobacter oleivorans 0 1148157 species 1 714 Acinetobacter indicus species 756892 0 1 1 29430 species 0 Acinetobacter haemolyticus 1495 species 108981 0 1 1304 Acinetobacter schindleri 1 40214 species 0 Acinetobacter johnsonii 924 0 487316 species 1 1256 Acinetobacter soli 63 5 genus 475 0 1 Moraxella 5534 1 0 species 386891 Moraxella bovoculi 1080 1 species 480 0 Moraxella catarrhalis 1571 1 0 species 34062 Moraxella osloensis 2269 551 Moraxella ovis 29433 species 0 1 225 11 497 genus 0 1 Psychrobacter 11862 6698 no rank 196806 0 6 Psychrobacter sp. G 849 1 0 571800 species Psychrobacter sp. P11G5 763 1 1699624 species 0 1699622 species 0 1 798 Psychrobacter sp. P2G3 1095 Psychrobacter sp. DAB_AL43B 0 species 1028416 1 Psychrobacter sp. AntiMn-1 785 1 1720344 species 0 2408 Psychrobacter sp. PRwf-1 species 349106 0 1 species 45610 0 1 1150 Psychrobacter urativorans 833 Psychrobacter arcticus 334543 species 0 1 1 species 261164 0 Psychrobacter alimentarius 1903 0 species 330922 1 1053 Psychrobacter cryohalolentis 116024 Pseudomonadaceae 1 family 135621 0 86 680 3 0 351 subfamily 2646 22 0 352 genus 3 1 2646 Azotobacter 1 species 353 0 Azotobacter chroococcum 1788 836 Azotobacter vinelandii species 354 0 1 Pseudomonas 111759 1 80 286 genus 0 2325 0 species group 136842 2 5010 1 296 species 0 Pseudomonas fragi 1012 587753 species 0 1 3998 Pseudomonas chlororaphis 639 Pseudomonas alcaliphila 0 species 101564 1 0 species 198620 1 1423 Pseudomonas koreensis 1 312306 species 0 Pseudomonas entomophila 450 19347 9 0 136843 species group 0 380021 species 1 1118 Pseudomonas protegens 0 species 200450 1 2000 Pseudomonas trivialis 474 Pseudomonas poae 0 200451 species 1 0 47879 species 1 525 Pseudomonas corrugata Pseudomonas azotoformans 2608 1 0 47878 species 1 294 species 0 Pseudomonas fluorescens 11051 498 Pseudomonas veronii species 76761 0 1 0 species 75612 1 602 Pseudomonas mandelii Pseudomonas orientalis 471 1 0 76758 species Pseudomonas frederiksbergensis 1548 1 0 104087 species 1 0 219572 species Pseudomonas antarctica 432 0 species group 136846 2 6046 0 74829 species 1 611 Pseudomonas balearica 5435 1 species subgroup 578833 0 Pseudomonas stutzeri 5435 1 0 316 species 1 0 species 1583341 Pseudomonas cerasi 1274 Pseudomonas versuta 574 1 1788301 species 0 0 157782 species 1 1156 Pseudomonas parafulva Pseudomonas alkylphenolica 515 1 0 237609 species 501 Pseudomonas rhizosphaerae species 216142 0 1 1 species 244566 0 Pseudomonas lurida 369 16998 0 species group 136845 6 1 species 76759 0 Pseudomonas monteilii 1982 species 47885 0 1 735 Pseudomonas oryzihabitans Pseudomonas plecoglossicida 616 1 0 70775 species species 303 0 1 9674 Pseudomonas putida 1038 Pseudomonas fulva species 47880 0 1 2953 Pseudomonas mosselii 0 species 78327 1 20683 196821 no rank 0 30 661 Pseudomonas sp. M30-35 0 species 1981174 1 Pseudomonas sp. XWY-1 632 1 2069256 species 0 Pseudomonas sp. LPH1 604 1 species 1898684 0 0 species 1338689 1 573 Pseudomonas sp. JY-Q Pseudomonas sp. ATCC 13867 778 1 1294143 species 0 Pseudomonas sp. SWI44 539 1 0 2083053 species 0 species 1500686 1 638 Pseudomonas sp. Os17 1 0 species 1500687 Pseudomonas sp. St29 618 0 species 2083054 1 523 Pseudomonas sp. LG1D9 Pseudomonas sp. LH1G9 527 1 species 2083055 0 635 Pseudomonas sp. DR 5-09 species 1534110 0 1 Pseudomonas sp. SWI36 749 1 0 species 2083052 Pseudomonas sp. PONIH3 541 1 1636610 species 0 Pseudomonas sp. StFLB209 612 1 1028989 species 0 1 0 69328 species Pseudomonas sp. VLB120 455 648 Pseudomonas sp. GR 6-02 0 species 1659194 1 Pseudomonas sp. MYb193 471 1 1827300 species 0 1 species 1649877 0 Pseudomonas sp. CCOS 191 537 0 species 2067572 1 756 Pseudomonas sp. NC02 1 0 species 1207075 Pseudomonas sp. UW4 485 Pseudomonas sp. HLS-6 554 1 species 2049589 0 1611770 species 0 1 723 Pseudomonas sp. MRSN12121 1 0 species 1930532 Pseudomonas sp. CC6-YY-74 1463 Pseudomonas sp. FDAARGOS_380 412 1 2018067 species 0 Pseudomonas sp. URMO17WK12:I11 1179 1 species 1283291 0 1813 Pseudomonas sp. TKP species 1415630 0 1 1 species 1259844 0 Pseudomonas sp. FGI182 491 629 Pseudomonas sp. TCU-HL1 0 species 1856685 1 659 Pseudomonas sp. SWI6 species 2083051 0 1 1 0 species 1931241 Pseudomonas sp. S-6-2 778 930166 species 0 1 1340 Pseudomonas brassicacearum 0 136849 species group 8 11989 1882 Pseudomonas syringae group genomosp. 3 0 species 251701 1 705 2775504 no rank 0 1 Pseudomonas sp. Lz4W 705 1 0 1206777 species 2338 2 species subgroup 251698 0 1 47877 species 0 Pseudomonas amygdali 820 Pseudomonas savastanoi 1518 1 0 species 29438 567 Pseudomonas avellanae 0 species 46257 1 Pseudomonas viridiflava 422 1 0 33069 species 454 Pseudomonas cichorii 0 36746 species 1 5621 251695 species subgroup 0 1 1 0 species 317 Pseudomonas syringae 5621 species group 136841 0 6 15577 53412 species 0 1 842 Pseudomonas resinovorans species 287 0 1 7948 Pseudomonas aeruginosa Pseudomonas mendocina 2828 1 0 300 species 1550 1 0 1232139 species subgroup 1550 Pseudomonas furukawaii species 1149133 0 1 1697 Pseudomonas citronellolis 53408 species 0 1 712 Pseudomonas alcaligenes 0 43263 species 1 0 species 237610 1 868 Pseudomonas psychrotolerans 1 0 species 1853130 Pseudomonas silesiensis 1339 880 Pseudomonas knackmussii 0 65741 species 1 0 species 157783 1 476 Pseudomonas cremoricolorata 5 2 1849530 genus 0 1 Oblitimonas 939 1 species 1697053 0 Oblitimonas alkaliphila 934 1 Acidiferrobacterales 2086 16 6 1692040 order 0 0 1692041 family 5 21 2070 Acidiferrobacteraceae 1 1 1425 Sulfurifustis 20 0 genus 1692042 2 Sulfurifustis variabilis 1405 1 species 1675686 0 11 2 1744881 genus 0 1 Sulfuricaulis 624 1 0 1620215 species Sulfuricaulis limicola 613 135625 order 0 32 31 28349 Pasteurellales 1 1 28318 Pasteurellaceae 159 712 family 0 31 3 0 155493 genus 2 1 871 Gallibacterium 0 750 species 1 868 Gallibacterium anatis 1 2094023 genus 0 1353 Glaesserella parasuis 1353 1 species 738 0 2 2 697331 genus 0 1 Basfia 437 157673 species 0 1 435 [Mannheimia] succiniciproducens Haemophilus 11742 1 6 724 genus 0 59 0 727 species 1 6397 Haemophilus influenzae 1 0 species 249188 Haemophilus pittmaniae 594 1 729 species 0 Haemophilus parainfluenzae 683 3346 [Haemophilus] ducreyi species 730 0 1 no rank 2609962 0 1 663 species 712310 0 1 663 Haemophilus sp. oral taxon 036 2390 Mannheimia 1 0 75984 genus 4 13 1 0 no rank 2645054 653 Mannheimia sp. USDA-ARS-USMARC-1261 653 1 0 1432056 species Mannheimia varigena 989 1 0 species 85404 Mannheimia haemolytica 735 1 species 75985 0 1526 Histophilus 1 0 genus 214906 2 18 1 731 species 0 Histophilus somni 1508 1 Aggregatibacter 1877 8 3 genus 416916 0 1 732 species 0 Aggregatibacter aphrophilus 817 1 0 714 species Aggregatibacter actinomycetemcomitans 1052 1 Pasteurella 4750 55 3 745 genus 0 1 747 species 0 Pasteurella multocida 3586 1109 Pasteurella dagmatis 0 754 species 1 910 Bibersteinia 1 476528 genus 0 2 8 Bibersteinia trehalosi 902 1 species 47735 0 5 713 genus 0 11 Actinobacillus 2303 1 Actinobacillus equuli 509 1 0 species 718 1 species 716 0 Actinobacillus suis 575 0 67854 species 1 428 Actinobacillus succinogenes 780 Actinobacillus pleuropneumoniae species 715 0 1 18 4 0 1775403 order 1 Nevskiales 733 family 568386 0 1 12 Sinobacteraceae 703 0 2689614 family 2 2 0 469322 genus 6 Steroidobacter 703 1 697 Steroidobacter denitrificans 0 465721 species 1 14 no rank 118884 0 15136 580 Thiolapillus 1 1608298 genus 0 2 6 574 Thiolapillus brandeum 0 1076588 species 1 Sedimenticola 863 1 2 0 349742 genus 12 851 Sedimenticola thiotaurini 1543721 species 0 1 5364 4 0 32036 clade 1442 Bathymodiolus septemdierum thioautotrophic gill symbiont 0 113267 species 1 1742 Candidatus Ruthia 1 0 1541743 genus 2 1 0 species 386487 1 1741 Candidatus Ruthia magnifica Calyptogena okutanii thioautotrophic gill symbiont 2180 1 410330 species 0 1 829 Pseudohongiella 5 0 1524249 genus 2 0 species 1249552 1 824 Pseudohongiella spirulinae 2718 0 198346 clade 1 186490 species 0 1 2718 Candidatus Baumannia cicadellinicola 3 0 655184 genus 94 Candidatus Thioglobus 4782 1 3162 Candidatus Thioglobus singularis 0 species 1427364 1 1 0 species 1705394 Candidatus Thioglobus autotrophicus 1526 Enterobacterales 293117 1 248 order 91347 0 830 39 1903411 family 0 95 Yersiniaceae 50131 1 1 Serratia 17357 357 16 613 genus 0 0 615 species 1 5452 Serratia marcescens Serratia proteamaculans 386 1 28151 species 0 1584 Serratia fonticola 0 species 47917 1 6262 2647522 no rank 0 8 2535 Serratia sp. SCBI 0 species 488142 1 428 Serratia sp. FGI94 0 species 671990 1 1 0 species 2033438 Serratia sp. MYb239 527 432 Serratia sp. ATCC 39006 104623 species 0 1 Serratia sp. SSNIH1 598 1 1758196 species 0 1 1327989 species 0 Serratia sp. FS14 722 1 0 768490 species Serratia sp. AS12 510 768493 species 0 1 510 Serratia sp. AS13 Serratia plymuthica 1410 1 species 82996 0 0 61651 species 1 632 Serratia ficaria 678 Serratia liquefaciens species 614 0 1 596 Serratia rubidaea 61652 species 0 1 Chania 367 1 2 genus 1745211 0 8 359 Chania multitudinisentens 0 species 1639108 1 30198 Yersinia 1 629 genus 0 13 222 Yersinia aleksiciae 573 1 0 species 263819 737 1 no rank 2653513 0 species 1839800 0 1 737 Yersinia sp. FDAARGOS_228 3457 Yersinia enterocolitica 630 species 0 1 species 28152 0 1 923 Yersinia kristensenii Yersinia frederiksenii 1876 1 species 29484 0 1149 Yersinia ruckeri 29486 species 0 1 Yersinia aldovae 1300 1 0 species 29483 759 Yersinia rohdei 29485 species 0 1 Yersinia intermedia 876 1 0 species 631 18326 species group 1649845 0 3 3187 Yersinia pseudotuberculosis 0 633 species 1 5336 Yersinia pestis species 632 0 1 0 367190 species 1 9803 Yersinia similis 13 4 34037 genus 0 1 Rahnella 1640 1 34038 species 0 Rahnella aquatilis 463 1164 2 0 2635087 no rank Rouxiella sp. ERMR1:05 682 1 species 1805933 0 482 Rahnella sp. Y9602 0 741091 species 1 0 1565532 genus 1 8 Rouxiella 929812 genus 0 2 7 466 Gibbsiella 1 1 929813 species 0 Gibbsiella quercinecans 459 family 1903414 0 22 82 21368 Morganellaceae 1 Providencia 3874 1 4 0 586 genus 14 1237 Providencia rettgeri 0 587 species 1 Providencia alcalifaciens 698 1 0 species 126385 1925 Providencia stuartii species 588 0 1 3 2 0 genus 581 1 Morganella 757 754 Morganella morganii 0 species 582 1 3446 Photorhabdus 1 0 genus 29487 4 9 0 species 29488 1 1098 Photorhabdus luminescens 844 Photorhabdus temperata 574560 species 0 1 0 291112 species 1 1495 Photorhabdus asymbiotica 1 4793 Xenorhabdus 38 0 626 genus 6 830 Xenorhabdus hominickii species 351679 0 1 1 0 40577 species Xenorhabdus poinarii 824 40576 species 0 1 1860 Xenorhabdus bovienii 1 species 628 0 Xenorhabdus nematophila 661 580 Xenorhabdus doucetiae 351671 species 0 1 6 0 genus 637 2 1 1796 Arsenophonus 634113 species 0 1 1790 Arsenophonus symbiont of Lipoptena fortisetosa 15 0 genus 583 3 1 6620 Proteus Proteus mirabilis 4282 1 584 species 0 2323 Proteus vulgaris 0 585 species 1 52 1903412 family 0 14 1 31233 Hafniaceae 0 82982 genus 2 6 852 Obesumbacterium 1 Obesumbacterium proteus 846 1 82983 species 0 Hafnia 2046 1 3 0 568 genus 21 1 no rank 2621980 0 535 1 0 species 1848580 Hafnia sp. CBA7124 535 1 0 569 species Hafnia alvei 1490 8 genus 635 0 121 Edwardsiella 28283 1 species 67780 0 1 853 Edwardsiella ictaluri Edwardsiella hoshinae 366 1 0 93378 species 22935 Edwardsiella tarda 0 636 species 1 2 no rank 2676541 0 2133 Edwardsiella sp. EA181011 1117 1 0 1578828 species 0 1650654 species 1 1016 Edwardsiella sp. LADL05-105 Edwardsiella piscicida 707 1 species 1263550 0 Edwardsiella anguillarum 1168 1 0 1821960 species 28 0 1903409 family 70 Erwiniaceae 38519 1 31 genus 51228 0 2 1 3716 Wigglesworthia 3685 Wigglesworthia glossinidia 0 51229 species 1 1 474 Tatumella 6 genus 82986 0 2 1 53336 species 0 Tatumella citrea 468 48 0 genus 32199 2 1 19822 Buchnera 0 9 species 1 19774 Buchnera aphidicola 214 11 53335 genus 0 1 Pantoea 8673 1 species 470934 0 Pantoea vagans 1530 1 species 66269 0 Pantoea stewartii 683 1894 3 2630326 no rank 0 1 1484158 species 0 Pantoea sp. PSNIH1 466 0 species 592316 1 746 Pantoea sp. At-9b 0 species 1484157 1 682 Pantoea sp. PSNIH2 1 species group 1654067 0 944 Pantoea agglomerans 944 1 species 549 0 534 Pantoea alhagi 0 species 1891675 1 1 0 species 1076550 Pantoea rwandensis 418 Pantoea ananatis 1170 1 species 553 0 Candidatus Pantoea carbekii 1286 1 1235990 species 0 2 0 genus 2100764 1440 1 species 665913 0 Pantoea calida 997 species 665914 0 1 443 Pantoea gaviniae 1 4324 Erwinia 45 0 551 genus 8 338565 species 0 1 453 Erwinia tasmaniensis species 182337 0 1 999 Erwinia billingiae 602 0 no rank 2622719 1 602 Erwinia sp. Ejp617 0 215689 species 1 79967 species 0 1 455 Erwinia pyrifoliae 1 species 1619313 0 Erwinia gerundensis 460 Candidatus Erwinia sp. ErCipseudotaxifoliae 787 1 species 1922217 0 1 0 552 species Erwinia amylovora 523 2 no rank 451511 0 1199 0 702 genus 2 11 1199 Plesiomonas 1 Plesiomonas shigelloides 1188 1 species 703 0 1 Enterobacteriaceae 133871 623 119 0 543 family 1348 Cedecea 1 0 158483 genus 2 9 1 0 158822 species Cedecea neteri 1339 1 Shimwellia 332 4 2 genus 1335483 0 1 0 species 563 Shimwellia blattae 328 41 4 genus 83654 0 1 Leclercia 1543 962 2 0 2627398 no rank Leclercia sp. LSNIH3 499 1 0 species 1920116 463 Leclercia sp. LSNIH1 0 1920114 species 1 1 species 83655 0 Leclercia adecarboxylata 540 337 10 0 570 genus 1 Klebsiella 30245 species 1134687 0 1 1786 Klebsiella michiganensis Klebsiella oxytoca 3227 1 0 571 species 768 Klebsiella quasipneumoniae 0 1463165 species 1 Klebsiella quasivariicola 538 1 0 2026240 species 1 0 573 species Klebsiella pneumoniae 13790 1068 2 0 no rank 2608929 473 Klebsiella sp. M5al 1934254 species 0 1 species 1905288 0 1 595 Klebsiella sp. LTGPAF-6F 1227 Klebsiella variicola 0 244366 species 1 0 548 species 1 7504 Klebsiella aerogenes 0 genus 544 14 206 8545 Citrobacter 1 4329 7 0 1344959 species group 1 2066049 species 0 Citrobacter freundii complex sp. CFNIH2 375 1 57706 species 0 Citrobacter braakii 687 265 Citrobacter freundii complex sp. CFNIH4 2077148 species 0 1 0 species 67827 1 606 Citrobacter werkmanii 1 0 2077147 species Citrobacter freundii complex sp. CFNIH3 326 1 species 546 0 Citrobacter freundii 1785 1 0 species 2077149 Citrobacter freundii complex sp. CFNIH9 285 1531 Citrobacter farmeri species 67824 0 1 Citrobacter rodentium 331 1 species 67825 0 Citrobacter amalonaticus 997 1 species 35703 0 738 2 no rank 2644389 0 1 0 1920110 species Citrobacter sp. CFNIH10 493 1 0 1702170 species Citrobacter sp. FDAARGOS_156 245 1 545 species 0 Citrobacter koseri 413 427 1 0 579 genus 1 0 61648 species Kluyvera intermedia 427 2333 Raoultella 1 160674 genus 0 3 19 54291 species 0 1 1786 Raoultella ornithinolytica 0 575 species 1 528 Raoultella planticola 1 Enterobacter 11773 384 22 0 547 genus 2480 9 no rank 2608935 0 Enterobacter sp. R4-368 368 1 1166130 species 0 Enterobacter sp. ODB01 235 1 0 species 1827481 277 Enterobacter sp. FY-07 0 1692238 species 1 344 Enterobacter sp. SA187 1914861 species 0 1 Enterobacter sp. 638 354 1 species 399742 0 1 0 2051905 species Enterobacter sp. CRENT-193 284 184 Enterobacter sp. HK169 species 1868135 0 1 187 Enterobacter sp. E20 0 species 1560339 1 1 0 1977566 species Enterobacter sp. Crenshaw 247 12 354276 species group 0 8909 3849 Enterobacter cloacae 0 550 species 1 0 species 61645 1 869 Enterobacter asburiae 1 0 species 69218 Enterobacter cancerogenus 268 species 1812935 0 1 257 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 Enterobacter hormaechei 2363 1640 3 0 species 158836 225 Enterobacter xiangfangensis 0 subspecies 1296536 1 1 0 1812934 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 498 251 Enterobacter kobei 0 species 208224 1 1 0 299767 species Enterobacter ludwigii 262 3 no rank 2757714 0 790 Enterobacter cloacae complex sp. ECNIH7 248 1 1915310 species 0 1 0 species 2027919 Enterobacter cloacae complex bacterium 245 297 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 species 2077137 1 10 401618 genus 0 2 1 1134 Candidatus Riesia Candidatus Riesia pediculicola 1124 1 0 species 401619 1746 Pluralibacter 1 1330546 genus 0 3 9 1 1334193 species 0 [Enterobacter] lignolyticus 630 1 species 61647 0 Pluralibacter gergoviae 1107 Escherichia 26324 1 5 0 genus 561 38 1 0 208962 species Escherichia albertii 1010 species 564 0 1 302 Escherichia fergusonii species 1499973 0 1 353 Escherichia marmotae 24621 Escherichia coli species 562 0 1 7 2 0 409304 genus 1 Candidatus Ishikawaella 1498 species 168169 0 1 1491 Candidatus Ishikawaella capsulata 290 genus 1048757 0 1 1 species 1048758 0 Candidatus Moranella endobia 290 11 1330545 genus 0 4 1 1632 Lelliottia 398 Lelliottia jeotgali species 1907578 0 1 61646 species 0 1 821 Lelliottia amnigena 402 Lelliottia nimipressuralis 0 species 69220 1 3 590 genus 0 16 Salmonella 17924 1 Salmonella enterica 16618 1 0 28901 species 1290 Salmonella bongori species 54736 0 1 1 2094 Kosakonia 20 0 1330547 genus 5 0 species 208223 1 356 Kosakonia cowanii 386 Kosakonia sacchari species 1158459 0 1 Kosakonia oryzae 475 1 species 497725 0 0 species 283686 1 857 Kosakonia radicincitans 0 191675 no rank 18 14654 14654 18 0 clade 84563 208 Candidatus Doolittlea 1 0 1906657 genus 2 3 species 1778262 0 1 205 Candidatus Doolittlea endobia 2663 3 0 clade 146507 1220 568987 genus 0 1 1 species 138072 0 Candidatus Hamiltonella defensa 1220 1 1199245 species 0 secondary endosymbiont of Ctenarytaina eucalypti 388 134287 species 0 1 1055 secondary endosymbiont of Heteropsylla cubana 7276 7 clade 84564 0 1 7276 Candidatus Blochmannia 62 0 genus 203804 7 0 species 101534 1 1109 Candidatus Blochmannia pennsylvanicus 0 no rank 711328 2 2231 1505597 species 0 1 1261 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 970 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 0 1 1087 Candidatus Blochmannia chromaiodes species 251542 0 1 0 203907 species 1 1351 Candidatus Blochmannia floridanus 1436 Candidatus Blochmannia vafer 251535 species 0 1 genus 1906661 0 1 787 0 1070130 species 1 787 Candidatus Gullanella endobia 1 0 clade 199891 657 secondary endosymbiont of Trabutina mannipara 657 1 0 1835721 species 1974 1 genus 1682492 0 0 species 1410383 1 1974 Candidatus Tachikawaea gelatinosa 303 1906659 genus 0 1 303 Candidatus Hoaglandella endobia 1778263 species 0 1 Candidatus Mikella 786 1 2 genus 1906660 0 1 1 species 1778264 0 Candidatus Mikella endobia 785 4 620 genus 0 28 Shigella 777 1 387 Shigella dysenteriae 0 622 species 1 Shigella flexneri 189 1 623 species 0 173 1 0 2629414 no rank 173 Shigella sp. PAMC 28760 0 species 1813821 1 102 8 0 genus 413496 1 Cronobacter 3338 1 535744 species 0 Cronobacter universalis 328 1 28141 species 0 Cronobacter sakazakii 882 466 Cronobacter condimenti species 1163710 0 1 0 species 413502 1 380 Cronobacter turicensis 0 413503 species 1 335 Cronobacter malonaticus 1 species 413501 0 Cronobacter muytjensii 376 469 Cronobacter dublinensis species 413497 0 1 0 no rank 36866 5 5291 Enterobacteriaceae bacterium strain FGI 57 292 1 693444 species 0 Enterobacteriaceae bacterium ENNIH1 387 1 2066051 species 0 Plautia stali symbiont 3897 1 0 species 891974 349 Enterobacteriaceae bacterium ENNIH2 1920109 species 0 1 0 species 1920128 1 366 Enterobacteriaceae bacterium ENNIH3 20 0 family 1903410 39 Pectobacteriaceae 15276 1 Pectobacterium 5044 1 6 genus 122277 0 82 0 species 29471 1 512 Pectobacterium atrosepticum 0 55208 species 1 635 Pectobacterium wasabiae 0 1905730 species 1 1990 Pectobacterium parmentieri 1 0 2042057 species Pectobacterium polaris 494 1 species 554 0 Pectobacterium carotovorum 1331 5 84565 genus 0 57 Sodalis 4610 1 Sodalis glossinidius 519 1 0 species 63612 Sodalis endosymbiont of Henestaris halophilus 2332 1 0 species 1929246 1239307 species 0 1 642 Sodalis praecaptivus Candidatus Sodalis pierantonius 1060 1 species 1486991 0 6 204037 genus 0 68 Dickeya 4810 1 792 Dickeya solani species 1089444 0 1 1 species 204042 0 Dickeya zeae 2474 Dickeya fangzhongdai 481 1 species 1778540 0 0 species 204039 1 481 Dickeya dianthicola 204038 species 0 1 514 Dickeya dadantii 24 71655 genus 0 2 1 773 Brenneria 1 0 species 1109412 Brenneria goodwinii 749 690 Budviciaceae 1 0 1903416 family 3 4 2 0 82984 genus 5 Pragia 686 1 Pragia fontium 681 1 0 82985 species 1 Orbales 3904 8 6 0 order 1240482 Orbaceae 3896 1 5 1240483 family 0 13 14 0 genus 1335631 2 1 1669 Frischella 0 species 1267021 1 1655 Frischella perrara 2214 Gilliamella 1 genus 1193503 0 2 7 2207 Gilliamella apicola 0 1196095 species 1 292 106 0 135622 order 1 Alteromonadales 138055 1 4720 Psychromonadaceae 3 0 267894 family 4 0 67572 genus 3 11 4717 Psychromonas 1 1 0 no rank 2614957 2243 1 0 species 314282 Psychromonas sp. CNPT3 2243 2463 Psychromonas ingrahamii species 357794 0 1 44 family 267888 0 25 1 36643 Pseudoalteromonadaceae 1 36599 Pseudoalteromonas 541 53246 genus 0 24 1 species 43657 0 Pseudoalteromonas luteoviolacea 1401 1252 Pseudoalteromonas haloplanktis 0 228 species 1 0 394751 species 1 1382 Pseudoalteromonas arctica 1078 Pseudoalteromonas espejiana species 28107 0 1 Pseudoalteromonas tetraodonis 1016 1 43659 species 0 1 0 species 298657 Pseudoalteromonas spongiae 1554 1 species 43662 0 Pseudoalteromonas piscicida 882 1 288 species 0 Pseudoalteromonas atlantica 2425 Pseudoalteromonas issachenkonii 1033 1 0 152297 species Pseudoalteromonas piratica 1290 1 1348114 species 0 166935 species 0 1 1331 Pseudoalteromonas translucida 12630 no rank 194690 0 5 1 0 species 1761891 Pseudoalteromonas sp. 13-15 1164 7393 Pseudoalteromonas sp. NC201 1514074 species 0 1 1 1720343 species 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1346 species 283699 0 1 1359 Pseudoalteromonas sp. Bsw20308 1368 Pseudoalteromonas sp. SM9913 species 234831 0 1 1 247523 species 0 Pseudoalteromonas aliena 1270 1260 Pseudoalteromonas agarivorans 0 176102 species 1 Pseudoalteromonas tunicata 1779 1 0 314281 species Pseudoalteromonas marina 1092 1 0 species 267375 1339 Pseudoalteromonas nigrifaciens 28109 species 0 1 862 Pseudoalteromonas rubra 0 43658 species 1 1182 Pseudoalteromonas phenolica species 161398 0 1 72275 family 0 30 54 32249 Alteromonadaceae 1 1 Alteromonas 16947 144 10 226 genus 0 940 Alteromonas australica species 589873 0 1 1131 Alteromonas naphthalenivorans 0 715451 species 1 1528 Alteromonas stellipolaris 233316 species 0 1 3605 Alteromonas mediterranea 0 314275 species 1 3391 3 2614992 no rank 0 1031 Alteromonas sp. MB-3u-76 0 2058133 species 1 1261 Alteromonas sp. RW2A1 0 species 1917158 1 Alteromonas sp. Mac1 1099 1 species 1777491 0 4927 Alteromonas macleodii 0 28108 species 1 0 species 287094 1 1281 Alteromonas addita 3 2 0 1751872 genus 1 Lacimicrobium 1289 1286 Lacimicrobium alkaliphilum 0 species 1526571 1 1 6996 Marinobacter 196 genus 2742 0 10 Marinobacter psychrophilus 773 1 0 330734 species species 1420917 0 1 930 Marinobacter salarius 1 0 2743 species Marinobacter hydrocarbonoclasticus 1040 1 1874317 species 0 Marinobacter salinus 588 1 0 1420916 species Marinobacter similis 576 2257 0 83889 no rank 3 0 species 490759 1 930 Marinobacter sp. BSs20148 712 Marinobacter sp. LQ44 species 1749259 0 1 615 Marinobacter sp. CP1 species 1671721 0 1 Marinobacter adhaerens 636 1 1033846 species 0 1 Agarivorans 857 3 2 0 genus 261825 1 680279 species 0 Agarivorans gilvus 854 2 1621534 genus 0 5 Paraglaciecola 3381 1 3376 Paraglaciecola psychrophila 0 326544 species 1 1 Glaciecola 2725 13 3 89404 genus 0 Glaciecola nitratireducens 1456 1 0 species 300231 1256 1 0 2618684 no rank 1 983545 species 0 Glaciecola sp. 4H-3-7+YE-5 1256 9 267889 family 0 26 Colwelliaceae 15209 1 0 genus 1518149 2 7 2035 Thalassotalea 1 0 species 1763536 1 2028 Thalassotalea crassostreae 108 6 0 genus 28228 1 Colwellia 13148 0 no rank 196834 3 7824 2220 Colwellia sp. PAMC 20917 species 1816218 0 1 2590 Colwellia sp. MT41 species 58049 0 1 3014 Colwellia sp. PAMC 21821 0 1816219 species 1 species 1967665 0 1 2900 Colwellia beringensis species 28229 0 1 2316 Colwellia psychrerythraea 28 family 267890 0 25 1 43802 Shewanellaceae 24 0 genus 22 309 Shewanella 43774 1 Shewanella japonica 2729 1 species 93973 0 3541 Shewanella psychrophila 225848 species 0 1 0 species 404011 1 895 Shewanella piezotolerans 1252 Shewanella denitrificans 192073 species 0 1 4374 Shewanella baltica 0 species 62322 1 1 species 24 0 Shewanella putrefaciens 875 493 Shewanella marisflavi 260364 species 0 1 0 60478 species 1 476 Shewanella amazonensis 1 species 56812 0 Shewanella frigidimarina 2109 5620 Shewanella violacea 60217 species 0 1 6 0 no rank 196818 5067 0 60480 species 1 607 Shewanella sp. MR-4 1 0 species 2059264 Shewanella sp. Pdp11 1224 950 Shewanella sp. W3-18-1 species 351745 0 1 848 Shewanella sp. ANA-3 0 species 94122 1 1 2029986 species 0 Shewanella sp. WE21 732 1 species 60481 0 Shewanella sp. MR-7 706 821 Shewanella pealeana species 70864 0 1 Shewanella loihica 551 1 0 species 359303 0 species 271097 1 1692 Shewanella sediminis 2080 Shewanella woodyi 60961 species 0 1 Shewanella oneidensis 567 1 species 70863 0 271098 species 0 1 9590 Shewanella halifaxensis Shewanella bicestrii 733 1 0 species 2018305 2413 Idiomarinaceae 1 0 267893 family 6 4 5 0 135575 genus 31 Idiomarina 2409 1 1 135577 species 0 Idiomarina loihiensis 640 1 0 species 1096243 Idiomarina piscisalsi 592 2 0 no rank 2614829 1146 Idiomarina sp. X4 567 1 0 species 2055892 1 0 2100422 species Idiomarina sp. OT37-5b 579 3 0 family 267892 2 Ferrimonadaceae 486 1 5 2 0 genus 44011 1 Ferrimonas 484 0 species 44012 1 479 Ferrimonas balearica Moritellaceae 2241 1 3 family 267891 0 30 1 Moritella 2211 7 2 genus 58050 0 Moritella viscosa 2204 1 species 80854 0 1 31540 Chromatiales 210 0 135613 order 52 14 4 0 255526 family 1 Halothiobacillaceae 902 32 genus 109262 0 3 1 888 Halothiobacillus 1 0 2636392 no rank 439 Halothiobacillus sp. LS2 439 1 1860122 species 0 1 927 species 0 Halothiobacillus neapolitanus 417 723 Woeseiaceae 1 0 1738654 family 3 7 0 genus 1738655 2 28 716 Woeseia 1 688 Woeseia oceani species 1548547 0 1 9255 Ectothiorhodospiraceae 1 0 72276 family 18 128 Alkalilimnicola 740 1 2 0 genus 133193 15 1 351052 species 0 Alkalilimnicola ehrlichii 725 3 genus 1335745 0 26 Spiribacter 980 1 1 species 1335757 0 Spiribacter curvatus 478 Spiribacter salinus 476 1 0 species 1335746 106 106633 genus 0 6 1 4707 Thioalkalivibrio 1 2621013 no rank 0 620 1 396595 species 0 Thioalkalivibrio sp. K90mix 620 781 Thioalkalivibrio paradoxus 0 species 108010 1 Thioalkalivibrio nitratireducens 831 1 species 186931 0 Thioalkalivibrio versutus 640 1 106634 species 0 1729 Thioalkalivibrio sulfidiphilus 0 1033854 species 1 3 genus 1051 0 2 1 797 Ectothiorhodospira 794 1 no rank 2684909 0 0 species 1442136 1 794 Ectothiorhodospira sp. BSL-9 genus 85108 0 2 8 565 Halorhodospira 1 0 species 1053 1 557 Halorhodospira halophila 2 genus 1765964 0 2 Acidihalobacter 1338 1 0 species 160660 1 1336 Acidihalobacter prosperus 16640 Chromatiaceae 1 family 1046 0 18 84 822 0 no rank 82569 1 0 1978339 species 1 822 Chromatiaceae bacterium 2141T.STBD.0c.01a 85076 genus 0 2 13 1096 Marichromatium 1 Marichromatium purpuratum 1083 1 species 37487 0 Nitrosococcus 4411 1 4 0 genus 1227 30 1 0 species 473531 Nitrosococcus watsonii 3070 636 Nitrosococcus oceani 0 1229 species 1 1 0 species 133539 Nitrosococcus halophilus 675 85072 genus 0 2 10 779 Allochromatium 1 769 Allochromatium vinosum species 1049 0 1 Thioflavicoccus 930 1 2 0 156885 genus 11 919 Thioflavicoccus mobilis species 80679 0 1 6203 Thiodictyon 1 0 genus 53392 2 73 1166950 species 0 1 6130 Candidatus Thiodictyon syntrophicum Thiocystis 1053 1 2 13724 genus 0 4 0 species 73141 1 1049 Thiocystis violascens 12 genus 1980513 0 2 1 1262 Candidatus Nitrosoglobus Candidatus Nitrosoglobus terrae 1250 1 0 species 1630141 1 Wenzhouxiangellaceae 918 8 3 family 1676141 0 910 Wenzhouxiangella 1 0 genus 1676142 2 16 1579979 species 0 1 894 Wenzhouxiangella marina 2 no rank 451214 0 917 35 1273155 genus 0 2 1 917 Thiohalobacter 0 585455 species 1 882 Thiohalobacter thiocyanaticus 1 Granulosicoccaceae 1975 12 3 449719 family 0 1963 Granulosicoccus 1 0 437504 genus 2 88 1 0 437505 species Granulosicoccus antarcticus 1875 0 order 135615 3 660 18 family 868 0 3 1 660 Cardiobacteriaceae 1 642 Dichelobacter 10 0 869 genus 2 632 Dichelobacter nodosus 0 species 870 1 135623 order 0 44 101 125627 Vibrionales 1 1 Vibrionaceae 125526 300 43 0 family 641 3859 Paraphotobacterium 1 2042066 genus 0 2 12 3847 Paraphotobacterium marinum 0 1755811 species 1 4 657 genus 0 27 Photobacterium 36183 1 634 Photobacterium gaetbulicola species 1295392 0 1 1 0 species 38293 Photobacterium damselae 33734 1788 Photobacterium profundum 0 species 74109 1 0 genus 511678 4 25 7108 Aliivibrio 1 3689 Aliivibrio wodanis species 80852 0 1 40269 species 0 1 1358 Aliivibrio salmonicida 2036 Aliivibrio fischeri 0 species 668 1 Grimontia 649 1 2 genus 246861 0 3 Grimontia hollisae 646 1 0 species 673 841 30 genus 662 0 1 Vibrio 77427 Vibrio qinghaiensis 981 1 0 2025808 species 39288 10 species group 717610 0 1 0 680 species Vibrio campbellii 10792 2315253 species subgroup 0 2 2428 0 species 50719 1 1703 Vibrio diabolicus 725 Vibrio antiquarius 150340 species 0 1 0 663 species 1 4181 Vibrio alginolyticus Vibrio parahaemolyticus 5237 1 670 species 0 species 669 0 1 6375 Vibrio harveyi 1043 Vibrio jasicida species 766224 0 1 Vibrio natriegens 2253 1 0 691 species 0 696485 species 1 2410 Vibrio owensii 4569 Vibrio rotiferianus 190895 species 0 1 0 2614977 no rank 2 1372 502 Vibrio sp. 2521-89 species 2014742 0 1 0 species 1116375 1 870 Vibrio sp. EJY3 0 species 1534743 1 1646 Vibrio hyugaensis 1 species 28173 0 Vibrio nigripulchritudo 1441 0 species 45658 1 3415 Vibrio scophthalmi Vibrio tapetis 3023 1 0 species 52443 0 553239 species 1 1187 Vibrio breoganii 0 species 674 1 1257 Vibrio mimicus 0 676 species 1 876 Vibrio fluvialis 0 species 672 1 5630 Vibrio vulnificus Vibrio tritonius 1048 1 1435069 species 0 1 species 55601 0 Vibrio anguillarum 2937 1 666 species 0 Vibrio cholerae 1698 2425 species group 1891919 0 1 2425 Vibrio tubiashii 0 29498 species 1 0 species 190893 1 2776 Vibrio coralliilyticus Vibrio furnissii 1861 1 0 29494 species 687 species 0 1 1312 Vibrio gazogenes Vibrio tasmaniensis 2413 1 species 212663 0 13 4 0 1934945 order 1 Immundisolibacterales 982 Immundisolibacteraceae 969 1 3 family 1934946 0 19 Immundisolibacter 950 1 2 0 1934947 genus 17 933 Immundisolibacter cernigliae 0 1810504 species 1 Cellvibrionales 17620 1 29 0 1706369 order 68 2521 Halieaceae 1 family 1706372 0 4 27 1 2494 Halioglobus 72 genus 1217416 0 3 Halioglobus pacificus 1198 1 species 930806 0 Halioglobus japonicus 1224 1 species 930805 0 1 Cellvibrionaceae 7844 75 12 0 1706371 family Simiduia 685 1 2 0 447467 genus 3 1 species 447471 0 Simiduia agarivorans 682 2809 Cellvibrio 1 10 genus 0 4 15 1952 2 2624793 no rank 0 1 species 1987723 0 Cellvibrio sp. PSBB006 1094 0 1945512 species 1 858 Cellvibrio sp. PSBB023 1 0 species 155077 Cellvibrio japonicus 842 1 1864 Agarilytica 3 2036021 genus 0 2 1861 Agarilytica rhodophyticola 0 species 1737490 1 8 2 genus 2425 0 1 Teredinibacter 1092 species 2426 0 1 1084 Teredinibacter turnerae 1319 0 genus 316625 1 1 0 86304 species Saccharophagus degradans 1319 7 family 1706375 0 54 Spongiibacteraceae 4357 1 1 Oceanicoccus 2165 5 2 genus 1084558 0 1 0 species 716816 Oceanicoccus sagamiensis 2160 0 630749 genus 2 10 1073 Spongiibacter 1 1 2631504 no rank 0 1063 species 1620392 0 1 1063 Spongiibacter sp. IMCC21906 2 0 genus 1434050 17 Zhongshania 1065 1 1 0 1470434 species Zhongshania aliphaticivorans 1048 0 family 1706373 5 27 2830 Microbulbiferaceae 1 Microbulbifer 2803 1 4 genus 48073 0 78 920 Microbulbifer aggregans 0 species 1769779 1 919 Microbulbifer thermotolerans 0 species 252514 1 Microbulbifer agarilyticus 886 1 0 260552 species Methylococcales 7570 1 13 0 135618 order 28 1 Methylococcaceae 7542 33 12 0 family 403 755 Methylovulum 1 0 genus 762296 2 4 1 1704499 species 0 Methylovulum psychrotolerans 751 3 39773 genus 0 2 1 1924 Methylomicrobium 0 species 271065 1 1921 Methylomicrobium alcaliphilum genus 416 0 5 132 4365 Methylomonas 1 1 no rank 2608980 0 824 824 Methylomonas sp. DH-1 species 1727196 0 1 779 Methylomonas methanica species 421 0 1 1 702114 species 0 Methylomonas koyamae 692 Methylomonas denitrificans 1938 1 1538553 species 0 413 genus 0 2 8 465 Methylococcus 1 1 0 414 species Methylococcus capsulatus 457 1 21994 Aeromonadales 151 135624 order 0 28 125 27 84642 family 0 1 Aeromonadaceae 21843 1 Zobellella 1037 6 2 0 genus 347533 1 347534 species 0 Zobellella denitrificans 1031 genus 225143 0 3 26 1613 Oceanisphaera 1 0 species 1416627 1 900 Oceanisphaera profunda Oceanisphaera sp. AMac2203 687 1 0 species 1903694 2 43947 genus 0 4 Tolumonas 465 1 1 0 species 43948 Tolumonas auensis 461 889 0 129577 genus 1 889 0 no rank 2636315 1 889 Oceanimonas sp. GK1 0 species 511062 1 Aeromonas 17714 1 18 genus 642 0 528 Aeromonas media 606 1 species 651 0 465 Aeromonas schubertii 0 species 652 1 5239 no rank 257493 0 8 1 species 2033032 0 Aeromonas sp. CA23 821 0 species 1636607 1 492 Aeromonas sp. ASNIH2 1 0 1636608 species Aeromonas sp. ASNIH3 382 2033033 species 0 1 502 Aeromonas sp. CU5 Aeromonas sp. ASNIH1 1093 1 0 species 1636606 1 species 1758179 0 Aeromonas sp. ASNIH5 634 Aeromonas sp. ASNIH4 937 1 species 1636609 0 378 Aeromonas sp. ASNIH7 0 species 1920107 1 477 Aeromonas rivipollensis 0 948519 species 1 0 species 644 1 4020 Aeromonas hydrophila Aeromonas salmonicida 2976 1 0 species 645 Aeromonas veronii 1897 1 0 species 654 1 0 species 196024 Aeromonas dhakensis 513 Aeromonas aquatica 650 1 0 558964 species species 648 0 1 343 Aeromonas caviae 93651 Xanthomonadales 1 0 order 135614 54 356 62 0 family 1775411 14 1 6052 Rhodanobacteraceae Frateuria 663 1 2 0 70411 genus 6 1 species 81475 0 Frateuria aurantia 657 2103 Dyella 1 0 231454 genus 4 26 1 species 231455 0 Dyella japonica 711 species 1379159 0 1 651 Dyella jiangningensis species 445710 0 1 715 Dyella thiooxydans 1 Dokdonella 965 11 2 0 323413 genus 323415 species 0 1 954 Dokdonella koreensis Luteibacter 517 1 2 242605 genus 0 6 0 242606 species 1 511 Luteibacter rhizovicinus 11 0 75309 genus 2 1 1205 Rhodanobacter 1194 Rhodanobacter denitrificans 0 species 666685 1 1 0 2233801 genus 537 537 Xanthomonadales bacterium D13 0 2021234 species 1 87243 Xanthomonadaceae 1 0 family 32033 39 641 15 2 genus 83614 0 1 Luteimonas 632 Luteimonas sp. 100111 617 1 0 2006110 species 0 40323 genus 9 192 18868 Stenotrophomonas 1 995085 species group 0 1 9002 1 0 species 40324 Stenotrophomonas maltophilia 9002 species 216778 0 1 783 Stenotrophomonas rhizophila Stenotrophomonas acidaminiphila 1750 1 species 128780 0 4 0 196198 no rank 5553 688 Stenotrophomonas sp. LM091 0 1904944 species 1 0 1793721 species 1 1518 Stenotrophomonas sp. KCTC 12332 1372 Stenotrophomonas sp. WZN-1 0 species 2005046 1 1 0 1827305 species Stenotrophomonas sp. MYb57 1975 1588 Stenotrophomonas nitritireducens 83617 species 0 1 3 0 genus 2370 2 1 7185 Xylella Xylella fastidiosa 7182 1 2371 species 0 2374 Pseudoxanthomonas 1 0 genus 83618 3 13 758 Pseudoxanthomonas spadix 415229 species 0 1 Pseudoxanthomonas suwonensis 1603 1 314722 species 0 Xanthomonas 44484 1 17 0 338 genus 628 11470 2 0 643453 species group 366648 species 0 1 2051 Xanthomonas fuscans 1 species 346 0 Xanthomonas citri 9419 1 species 56454 0 Xanthomonas hortorum 1179 1 29447 species 0 Xanthomonas albilineans 852 9375 Xanthomonas oryzae 347 species 0 1 2024 Xanthomonas fragariae 48664 species 0 1 1 species 56459 0 Xanthomonas vasicola 581 Xanthomonas alfalfae 902 1 366650 species 0 Xanthomonas sacchari 957 1 56458 species 0 species 343 0 1 3157 Xanthomonas translucens 1 456327 species 0 Xanthomonas euvesicatoria 1326 8024 Xanthomonas campestris 0 339 species 1 Xanthomonas perforans 825 1 442694 species 0 1 species 53413 0 Xanthomonas axonopodis 628 1071 Xanthomonas phaseoli 0 species 1985254 1 1485 Xanthomonas vesicatoria species 56460 0 1 Lysobacter 13059 1 5 0 68 genus 61 species 69 0 1 1119 Lysobacter enzymogenes 0 species 262324 1 2091 Lysobacter gummosus 1 species 435897 0 Lysobacter capsici 4114 1 84531 species 0 Lysobacter antibioticus 5674 1 69145 Thiotrichales 17 72273 order 0 36 15 0 34064 family 63 Francisellaceae 51895 1 Francisella 49925 1 12 0 genus 262 333 Francisella sp. TX077308 1888 1 species 573569 0 0 no rank 2610885 2 4098 2432 Francisella sp. FSC1006 0 species 1547445 1 1 0 475375 species Francisella sp. MA067296 1666 2565 Francisella sp. CA97-1460 species 1542390 0 1 954 species 0 1 1397 Francisella persica 1 0 549298 species Francisella halioticida 19290 1 species 263 0 Francisella tularensis 6716 4877 Francisella philomiragia 28110 species 0 1 1 species 622488 0 Francisella hispaniensis 1926 3636 Francisella sp. TX077310 0 species 573570 1 species 657445 0 1 3199 Francisella noatunensis 2 1869285 genus 0 15 Allofrancisella 1907 1 1 species 594679 0 Allofrancisella guangzhouensis 1892 1 4321 Thiotrichaceae 24 family 135617 0 5 5 2 0 40751 genus 1 Thioploca 2430 0 species 40754 1 2425 Thioploca ingrica 1 Beggiatoa 1867 6 2 1021 genus 0 Beggiatoa leptomitoformis 1861 1 288004 species 0 1 12912 Piscirickettsiaceae 70 family 135616 0 15 Piscirickettsia 2890 1 2 genus 1237 0 4 1 species 1238 0 Piscirickettsia salmonis 2886 1 1843 Methylophaga 46 genus 40222 0 3 1 754477 species 0 Methylophaga frappieri 863 species 754476 0 1 934 Methylophaga nitratireducenticrescens 1 Cycloclasticus 5890 96 4 34067 genus 0 no rank 2621467 0 2 3433 1740 Cycloclasticus sp. P1 0 species 385025 1 1693 Cycloclasticus sp. PY97N 728003 species 0 1 2361 Cycloclasticus zancles 1329899 species 0 1 genus 933 0 3 17 1324 Thiomicrospira 1 1 0 species 147268 Thiomicrospira cyclica 590 species 92245 0 1 717 Thiomicrospira aerophila 2 28884 genus 0 2 1 895 Hydrogenovibrio 1 species 39765 0 Hydrogenovibrio crunogenus 893 Legionellales 29253 1 21 order 118969 0 31 1 25297 Legionellaceae 62 444 family 0 15 1 Legionella 23959 147 12 genus 445 0 0 29423 species 1 1431 Legionella oakridgensis Legionella hackeliae 1351 1 449 species 0 species 452 0 1 910 Legionella spiritensis 1 2005262 species 0 Legionella endosymbiont of Polyplax serrata 2024 1 0 species 450 Legionella longbeachae 1880 1 0 45067 species Legionella lansingensis 1254 Legionella waltersii 1473 1 0 66969 species 1 0 96230 species Legionella fallonii 1768 1 1867846 species 0 Legionella clemsonensis 1351 Legionella pneumophila 8099 1 446 species 0 2271 Legionella sainthelensi 0 28087 species 1 7 0 genus 465 2 1 1276 Tatlockia 1269 Tatlockia micdadei species 451 0 1 5 0 118968 family 42 Coxiellaceae 3925 1 33 3 genus 776 0 1 Coxiella 2664 1 0 2676648 no rank 1011 1 0 species 325775 Coxiella endosymbiont of Amblyomma americanum 1011 species 777 0 1 1620 Coxiella burnetii 1219 1 134284 no rank 0 0 1592897 species 1 1219 Coxiella-like endosymbiont 1516 0 phylum 508458 10 Synergistia 1516 1 10 649775 class 0 1 9 order 649776 0 9 Synergistales 1515 1 8 649777 family 0 5 Synergistaceae 1506 1 209 49894 genus 0 1 Acetomicrobium mobile 209 1 97477 species 0 6 genus 508459 0 2 1 359 Cloacibacillus 0 species 1197717 1 353 Cloacibacillus porcorum 292 1 0 81461 genus 1 0 81462 species Thermanaerovibrio acidaminovorans 292 2 0 genus 81466 2 Aminobacterium 374 1 1 species 81468 0 Aminobacterium colombiense 372 1 0 336260 genus 267 267 Thermovirga lienii 0 336261 species 1 2 2138240 phylum 0 390 2 2138243 class 0 1 Coprothermobacteria 390 1 0 2138246 order 1 389 389 family 2138247 0 1 389 1 0 genus 68335 0 species 35786 1 389 Coprothermobacter proteolyticus 40539 1783257 clade 0 100 7045 24 204428 phylum 0 24 0 204429 class 14 Chlamydiia 7045 1 1 4844 Chlamydiales 20 order 51291 0 14 1 4824 Chlamydiaceae 8 0 family 809 13 4816 12 0 no rank 1113537 49 12 0 genus 810 1 Chlamydia 4816 1 0 83554 species Chlamydia psittaci 515 0 83559 species 1 240 Chlamydia suis 0 species 83557 1 327 Chlamydia caviae Chlamydia felis 370 1 species 83556 0 Chlamydia trachomatis 350 1 0 813 species 0 species 83560 1 359 Chlamydia muridarum Chlamydia pecorum 681 1 species 85991 0 419 Chlamydia gallinacea 0 1457153 species 1 0 1457141 species 1 423 Chlamydia avium Chlamydia pneumoniae 724 1 0 species 83558 Chlamydia abortus 359 1 83555 species 0 1 Parachlamydiales 2187 8 9 1963360 order 0 2 92712 family 0 552 2 2 0 genus 34093 1 Simkania 552 0 83561 species 1 550 Simkania negevensis 2 92714 family 0 437 4 2 71666 genus 0 1 Waddlia 437 433 Waddlia chondrophila species 71667 0 1 3 4 0 92713 family 1 Parachlamydiaceae 1190 489 genus 282132 0 1 489 Candidatus Protochlamydia naegleriophila 389348 species 0 1 698 Parachlamydia 1 83551 genus 0 2 2 696 Parachlamydia acanthamoebae 0 species 83552 1 256845 phylum 0 3 626 Lentisphaeria 626 1 3 0 1313211 class 8 0 order 278082 2 2 618 Victivallales 1 616 1 no rank 1674876 0 Victivallales bacterium CCUG 44730 616 1 0 2094242 species 6 30 0 74201 phylum 1 Verrucomicrobia 10893 1 1162 Methylacidiphilae 2 class 1955630 0 6 1 Methylacidiphilales 1160 7 5 717963 order 0 6 family 717964 0 4 1 1153 Methylacidiphilaceae 1 Methylacidiphilum 1147 2 3 511745 genus 0 Methylacidiphilum infernorum 495 1 0 species 511746 650 Methylacidiphilum fumariolicum species 591154 0 1 Opitutae 6808 1 12 0 414999 class 11 31 415000 order 0 7 1 3964 Opitutales 6 0 134623 family 22 Opitutaceae 3933 1 1 2 genus 1961799 0 1 Lacunisphaera 1088 Lacunisphaera limnophila 1087 1 species 1838286 0 1580 0 no rank 278955 1 Opitutaceae bacterium TAV5 1580 1 794903 species 0 2 178440 genus 0 4 Opitutus 1243 1 1239 Opitutus terrae 107709 species 0 1 2833 Puniceicoccales 1 0 415001 order 4 8 1 2825 Puniceicoccaceae 2 0 415002 family 3 6 442430 genus 0 2 1 2823 Coraliomargarita 1 0 species 395922 Coraliomargarita akajimensis 2817 1723 0 no rank 417295 2 1037 Verrucomicrobia bacterium species 2026799 0 1 1 0 species 1637999 Verrucomicrobia bacterium IMCC26134 686 995 Verrucomicrobiae 1 0 203494 class 6 1 994 Verrucomicrobiales 1 0 order 48461 5 6 1 988 Akkermansiaceae 6 0 family 1647988 4 16 0 genus 239934 3 1 982 Akkermansia 1 0 1679444 species Akkermansia glycaniphila 486 0 species 239935 1 480 Akkermansia muciniphila 1 3 0 class 134549 1 Spartobacteria 199 12 genus 134550 0 2 1 198 Candidatus Xiphinematobacter no rank 2648876 0 1 186 0 1704307 species 1 186 Candidatus Xiphinematobacter sp. Idaho Grape 1 20428 Planctomycetes 1 0 203682 phylum 38 26 class 203683 0 41 Planctomycetia 10985 1 11 order 112 0 217 Planctomycetales 4857 1 89 10 0 family 126 1 Planctomycetaceae 4640 Planctopirus 502 1 2 0 genus 1649480 1 501 Planctopirus limnophila 120 species 0 1 Fuerstia 928 1 2 genus 1936111 0 5 1891926 species 0 1 923 Fuerstia marisgermanicae 1 Planctomyces 2452 21 3 0 118 genus 2 0 no rank 2648843 2431 1636152 species 0 1 1551 Planctomyces sp. SH-PL62 0 species 1632864 1 880 Planctomyces sp. SH-PL14 1 669 Rubinisphaera 8 1649490 genus 0 2 Rubinisphaera brasiliensis 661 1 0 119 species 2691355 order 0 3 1173 11 3 family 1914233 0 1 Gemmataceae 1173 Gemmata 1162 1 2 0 genus 113 41 1121 1 2622970 no rank 0 1121 Gemmata sp. SH-PL17 0 1630693 species 1 0 order 2691356 6 2958 6 1763524 family 0 14 Isosphaeraceae 2958 1 962 1 0 genus 1763521 1387353 species 0 1 962 Paludisphaera borealis 969 Singulisphaera 1 0 466152 genus 2 30 Singulisphaera acidiphila 939 1 0 466153 species 1 Isosphaera 1013 29 2 0 genus 127 Isosphaera pallida 984 1 0 128 species 1956 0 2691354 order 5 1592 4 family 2691357 0 11 genus 265488 0 2 1 772 Rhodopirellula 1 0 species 265606 Rhodopirellula baltica 761 2 genus 123 0 5 Pirellula 820 1 Pirellula staleyi 815 1 0 species 125 364 0 2691358 family 1 364 1 0 1676125 genus 364 Thermogutta terrifontis 0 species 1331910 1 1 2525 Phycisphaerae 15 0 666505 class 7 1 Phycisphaerales 1761 24 4 0 order 666506 1737 Phycisphaeraceae 1 0 666507 family 3 5 666508 genus 0 2 3 1732 Phycisphaera 1 547188 species 0 1 1729 Phycisphaera mikurensis 749 0 order 2483366 2 749 2 2483367 family 0 749 2 0 2483368 genus 1 0 species 1941349 Phycisphaerae bacterium ST-PulAB-D4 456 1 1940790 species 0 Phycisphaerae bacterium L21-RPul-D3 293 0 2517206 class 4 6917 2 4 1127829 order 0 1 Candidatus Brocadiales 6917 0 family 1127830 3 3 6915 Candidatus Brocadiaceae 1 1 Candidatus Kuenenia 6912 1 2 380738 genus 0 Candidatus Kuenenia stuttgartiensis 6911 1 174633 species 0 phylum 134625 0 5 1547 5 class 1921781 0 3 Kiritimatiellae 1547 1 6 0 order 1921782 4 1 1544 Kiritimatiellales 1 Kiritimatiellaceae 1538 5 3 0 1921783 family 1 2 0 genus 1921784 1 Kiritimatiella 1533 Kiritimatiella glycovorans 1532 1 species 1307763 0 1208 5 phylum 1930617 0 5 class 1962850 0 3 Calditrichae 1208 1 0 order 1962852 4 5 1205 Calditrichales 1 2 3 0 family 1962854 1 Calditrichaceae 1200 1 0 187144 genus 2 1 1198 Caldithrix 1197 Caldithrix abyssi 187145 species 0 1 5 0 200938 phylum 413 5 class 118001 0 2 Chrysiogenetes 413 1 9 4 0 189769 order 1 Chrysiogenales 411 402 Chrysiogenaceae 1 0 family 189770 3 1 Desulfurispirillum 401 1 2 0 393029 genus 3 Desulfurispirillum indicum 398 1 0 species 936456 13 0 74152 phylum 11 1 2448 Elusimicrobia 6 447830 class 0 2 Endomicrobia 1360 1 2 5 0 order 1783344 1 Endomicrobiales 1358 3 4 1783343 family 0 1 Endomicrobiaceae 1356 Endomicrobium 1353 1 3 1408194 genus 0 2 0 1408204 species 1 564 Candidatus Endomicrobium trichonymphae Endomicrobium proavitum 787 1 0 species 1408281 609 1 0 99260 no rank 1 0 167965 species uncultured Termite group 1 bacterium 609 0 class 641853 3 466 3 3 0 641854 order 1 Elusimicrobiales 466 1 463 Elusimicrobiaceae 1 0 family 641876 2 462 1 genus 423604 0 Elusimicrobium minutum 462 1 423605 species 0 1343 no rank 2323 0 3 1783234 clade 0 3 1343 0 phylum 95818 1 134 134 1 no rank 1895827 0 1 2056494 species 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 134 2 0 clade 95901 1209 1209 2497643 class 0 2 0 order 2497644 2 1209 1209 2 2497645 family 0 genus 1551504 0 2 8 1209 Candidatus Babela 1 1 673862 species 0 Candidatus Babela massiliensis 1201 200918 phylum 0 42 19327 19327 Thermotogae 1 0 class 188708 42 37 5 0 1643946 order 1480 1 Kosmotogaceae 1480 4 5 1643948 family 0 2 3 651456 genus 0 1 Kosmotoga 1150 651457 species 0 1 400 Kosmotoga olearia 1 0 species 1330330 Kosmotoga pacifica 748 1 0 1184396 genus 326 Mesotoga prima 326 1 0 species 1184387 Petrotogales 6334 1 8 0 1643947 order 7 6327 1643949 family 0 7 1 1166 Petrotoga 1 genus 28236 0 2 1165 Petrotoga mobilis 0 69499 species 1 2 1511648 genus 0 8 Defluviitoga 1391 1 Defluviitoga tunisiensis 1383 1 0 1006576 species 3770 Marinitoga 1 160798 genus 0 3 39 1830 1 no rank 2640159 0 1 0 1545835 species Marinitoga sp. 1137 1830 1 149715 species 0 Marinitoga piezophila 1901 2419 order 0 28 23 11476 Thermotogales 1 3 10 family 1643950 0 1 Fervidobacteriaceae 7349 1 5218 Thermosipho 35 0 2420 genus 5 0 2421 species 1 1635 Thermosipho africanus 1237 Thermosipho melanesiensis 0 species 46541 1 0 no rank 2676525 2 2311 Thermosipho sp. 1063 1096 1 0 1462747 species Thermosipho sp. 1070 1215 1 0 1437364 species 16 4 0 genus 2422 1 Fervidobacterium 2128 1 0 2423 species Fervidobacterium islandicum 397 818 Fervidobacterium pennivorans species 93466 0 1 897 Fervidobacterium nodosum 0 2424 species 1 family 188709 0 17 4 4104 Thermotogaceae 1 1 1958 Pseudothermotoga 19 1643951 genus 0 5 1 0 species 57487 Pseudothermotoga hypogea 160 Pseudothermotoga thermarum 451 1 0 species 119394 0 species 177758 1 671 Pseudothermotoga lettingae 1 species 38322 0 Pseudothermotoga elfii 657 52 11 2335 genus 0 1 Thermotoga 2142 Thermotoga caldifontis 128 1 0 species 1508419 184 Thermotoga naphthophila species 93930 0 1 1 0 species 2337 Thermotoga neapolitana 159 0 2336 species 1 257 Thermotoga maritima 690 no rank 2631113 0 4 1 species 126738 0 Thermotoga sp. RQ7 168 1 1157948 species 0 Thermotoga sp. 2812B 184 173 Thermotoga sp. RQ2 species 126740 0 1 165 Thermotoga sp. Cell2 0 species 1157947 1 Thermotoga profunda 509 1 1508420 species 0 1 species 93929 0 Thermotoga petrophila 163 53586 25 phylum 32066 0 1 53586 Fusobacteriia 45 0 203490 class 25 53541 Fusobacteriales 1 order 203491 0 24 72 16 11 1129771 family 0 1 Leptotrichiaceae 11681 Leptotrichia 6495 1 5 0 genus 32067 51 3 0 no rank 2633022 4837 1 0 712357 species Leptotrichia sp. oral taxon 212 1398 1748 Leptotrichia sp. oral taxon 498 712368 species 0 1 species 1785996 0 1 1691 Leptotrichia sp. oral taxon 847 1607 Leptotrichia buccalis species 40542 0 1 34104 genus 0 1 2283 1 34105 species 0 Streptobacillus moniliformis 2283 1 2 0 genus 32068 1 Sebaldella 1492 species 826 0 1 1491 Sebaldella termitidis genus 168808 0 2 16 1395 Sneathia 1 Sneathia amnii 1379 1 species 187101 0 family 203492 0 12 46 41788 Fusobacteriaceae 1 40356 Fusobacterium 1 genus 848 0 9 140 0 1583098 species 1 4236 Fusobacterium hwasookii Fusobacterium periodonticum 7357 1 860 species 0 1 0 species 859 Fusobacterium necrophorum 955 1 0 species 851 Fusobacterium nucleatum 17361 1 0 species 861 Fusobacterium ulcerans 2245 4500 Fusobacterium varium 0 species 856 1 1350 Fusobacterium gonidiaformans 0 species 849 1 0 850 species 1 2212 Fusobacterium mortiferum 3 2 genus 167639 0 1 Ilyobacter 1386 Ilyobacter polytropus 1383 1 167642 species 0 11 200930 phylum 0 7099 68337 class 0 11 18 7099 Deferribacteres 1 1 7081 Deferribacterales 22 191393 order 0 10 1 Deferribacteraceae 7059 27 9 0 191394 family 8 2 genus 117999 0 1 Denitrovibrio 632 118000 species 0 1 624 Denitrovibrio acetiphilus 0 2351 genus 2 2 2203 Flexistipes 1 Flexistipes sinusarabici 2201 1 0 species 2352 53572 genus 0 2 2 3031 Deferribacter 1 Deferribacter desulfuricans 3029 1 species 197162 0 1166 Calditerrivibrio 1 545865 genus 0 2 1 1165 Calditerrivibrio nitroreducens 0 species 477976 1 4260 8 0 phylum 200940 9 8 class 67799 0 1 Thermodesulfobacteria 4260 order 188710 0 7 4 4251 Thermodesulfobacteriales 1 6 family 188711 0 24 Thermodesulfobacteriaceae 4247 1 444090 genus 0 1 654 Caldimicrobium thiodismutans 654 1 0 1653476 species 578 genus 241192 0 1 Thermodesulfatator indicus 578 1 0 species 171695 Thermodesulfobacterium 2991 1 3 0 1740 genus 1 species 1741 0 1 870 Thermodesulfobacterium commune 1295609 species 0 1 2120 Thermodesulfobacterium geofontis 407370 0 clade 1783270 377 400706 364 68336 clade 0 39 336 phylum 976 0 1 Bacteroidetes 388966 1 10060 Chitinophagia 20 1853228 class 0 17 10040 Chitinophagales 1 1853229 order 0 16 26 72 563835 family 0 15 1 10014 Chitinophagaceae 2 0 genus 354354 3 Niastella 2835 1 1 0 species 354356 Niastella koreensis 2832 1454 Arachidicoccus 1 0 1769012 genus 2 3 1451 0 2636138 no rank 1 1451 Arachidicoccus sp. BS20 0 species 1850526 1 1 1378 Niabella 14 genus 379899 0 3 690 Niabella ginsenosidivorans 0 species 1176587 1 Niabella soli 674 1 0 446683 species Flavisolibacter 1764 1 2 398041 genus 0 1 1 species 1492898 0 Flavisolibacter tropicus 1763 genus 79328 0 3 4 1705 Chitinophaga 1 species 2029983 0 1 797 Chitinophagaceae bacterium 13 904 Chitinophaga pinensis 0 79329 species 1 2 2 0 genus 649460 1 Filimonas 806 0 477680 species 1 804 Filimonas lacunae Sphingobacteriia 25076 1 24 117747 class 0 25 49 23 200666 order 0 1 Sphingobacteriales 25051 1 Sphingobacteriaceae 25002 71 22 84566 family 0 Mucilaginibacter 3993 1 4 0 423349 genus 48 2084 Mucilaginibacter gotjawali species 1550579 0 1 species 1234841 0 1 1085 Mucilaginibacter sp. BJC16-A31 776 2617802 no rank 0 1 776 Mucilaginibacter sp. PAMC 26640 1300914 species 0 1 3537 1 0 84568 no rank 0 1986952 species 1 3537 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 6 genus 84567 0 65 Pedobacter 8226 1 Pedobacter ginsengisoli 1846 1 0 species 363852 1 species 188932 0 Pedobacter cryoconitis 1867 1329 Pedobacter steynii 0 species 430522 1 1 0 species 984 Pedobacter heparinus 1684 1435 1 2628915 no rank 0 1435 Pedobacter sp. PACM 27299 1727164 species 0 1 22 2 genus 929509 0 1 Solitalea 1781 1 0 995 species Solitalea canadensis 1759 6 genus 28453 0 73 Sphingobacterium 5822 1 0 species 1010 1 1113 Sphingobacterium mizutaii 4 0 no rank 2609468 4636 1454 Sphingobacterium sp. ML3W 1538644 species 0 1 1933220 species 0 1 1058 Sphingobacterium sp. B29 0 species 743722 1 1047 Sphingobacterium sp. 21 2003121 species 0 1 1077 Sphingobacterium sp. G1-14 1572 Pseudopedobacter 1 1649482 genus 0 2 1 1571 Pseudopedobacter saltans 151895 species 0 1 2662 Bacteroidetes Order II. Incertae sedis 1 order 1100069 0 6 19 5 0 563843 family 14 Rhodothermaceae 2643 1 1 no rank 1196022 0 1066 1066 Rhodothermaceae bacterium RA species 1779382 0 1 1 804 Rhodothermus 19 0 29548 genus 2 29549 species 0 1 785 Rhodothermus marinus 759 0 146918 genus 1 0 146919 species 1 759 Salinibacter ruber 1 Saprospiria 3426 7 6 class 1937959 0 5 1936988 order 0 3419 1248 2 family 89374 0 1 Saprospira 1248 8 2 1007 genus 0 1 0 species 1008 Saprospira grandis 1240 1 3 family 1937961 0 1 Haliscomenobacteraceae 2171 0 genus 2349 2 11 2170 Haliscomenobacter 1 0 2350 species 1 2159 Haliscomenobacter hydrossis 1 Cytophagia 60159 75 62 class 768503 0 1 Cytophagales 60084 173 61 0 order 768507 2 0 family 1853234 3 1 2026 Persicobacteraceae 1 2024 Persicobacter 15 0 genus 59740 2 1 no rank 2664020 0 2009 2009 Persicobacter sp. JZB09 0 1085624 species 1 7 0 family 200667 4 1 20326 Flammeovirgaceae 1 no rank 340671 0 15425 0 1257021 species 1 15425 Flammeovirgaceae bacterium 311 4894 Flammeovirga 1 0 genus 59739 2 11 4883 2637820 no rank 0 1 0 1191459 species 1 4883 Flammeovirga sp. MY04 12028 Cytophagaceae 1 89373 family 0 17 19 2 0 genus 319458 15 Leadbetterella 941 1 316068 species 0 1 926 Leadbetterella byssophila 4842 Spirosoma 1 genus 107 0 6 35 Spirosoma radiotolerans 1131 1 1379870 species 0 species 2057025 0 1 1114 Spirosoma sp. HA7 species 1211326 0 1 1098 Spirosoma aerolatum 1178516 species 0 1 933 Spirosoma montaniterrae 531 Spirosoma rigui 564064 species 0 1 1 2769 Runella 6 genus 105 0 2 Runella slithyformis 2763 1 species 106 0 1772 Cytophaga 1 0 genus 978 2 40 985 species 0 1 1732 Cytophaga hutchinsonii 10 2 genus 120831 0 1 Dyadobacter 1082 Dyadobacter fermentans 1072 1 species 94254 0 1 603 Fibrella 11 861914 genus 0 2 592 0 no rank 2620963 1 1 1834519 species 0 Fibrella sp. ES10-3-2-2 592 1501348 family 0 5 25 1455 Amoebophilaceae 1 1 Candidatus Cardinium 555 2 2 273135 genus 0 553 1 2641185 no rank 0 1 species 249402 0 Cardinium endosymbiont of Encarsia pergandiella 553 0 genus 281119 2 4 875 Candidatus Amoebophilus 1 871 Candidatus Amoebophilus asiaticus 281120 species 0 1 0 family 563798 10 16 7259 Cyclobacteriaceae 1 68288 genus 0 3 14 3174 Cyclobacterium 1 Cyclobacterium amurskyense 1651 1 0 species 320787 Cyclobacterium marinum 1509 1 0 species 104 2 0 genus 246875 4 Algoriphagus 1109 1 species 1727163 0 1 1105 Algoriphagus sp. M8-2 2 genus 390846 0 33 Echinicola 913 1 1 0 species 390884 Echinicola vietnamensis 880 Belliella 2047 1 2 0 genus 232244 30 232259 species 0 1 2017 Belliella baltica 16 family 1853232 0 20 Hymenobacteraceae 10908 1 1379908 genus 0 4 14 3163 Rufibacter 1 Rufibacter tibetensis 1143 1 0 species 512763 2006 2 2639626 no rank 0 1146 Rufibacter sp. DG31D 0 species 1379910 1 1 0 1379909 species Rufibacter sp. DG15C 860 1 Hymenobacter 6524 51 8 0 genus 89966 4902 no rank 2615202 0 5 species 1356852 0 1 792 Hymenobacter sp. APR13 Hymenobacter sp. PAMC 26628 1617 1 1484118 species 0 523 Hymenobacter sp. DG25B species 1385664 0 1 1547 Hymenobacter sp. PAMC 26554 0 1484116 species 1 1385663 species 0 1 423 Hymenobacter sp. DG25A Hymenobacter swuensis 829 1 0 1446467 species 742 Hymenobacter sedentarius species 1411621 0 1 genus 323449 0 3 13 1201 Pontibacter 1 1 0 species 400092 Pontibacter korlensis 693 495 Pontibacter akesuensis species 388950 0 1 Bernardetiaceae 3362 1 3 0 family 1937968 9 Bernardetia 3353 1 2 0 1937972 genus 20 Bernardetia litoralis 3333 1 999 species 0 2547 2762301 family 0 2 34 0 869806 genus 2 1 2547 Marivirga 2513 Marivirga tractuosa 1006 species 0 1 1 Flavobacteriia 256415 192 150 117743 class 0 order 200644 0 149 316 256223 Flavobacteriales 1 1345 0 family 1333713 2 1345 Owenweeksia 1 0 genus 267986 2 33 1 0 species 253245 Owenweeksia hongkongensis 1312 1 family 246874 0 Cryomorphaceae 6 9486 Blattabacteriaceae 1 family 39782 0 10 10 59 genus 34098 0 9 1 9476 Blattabacterium 0 species 164514 1 1316 Blattabacterium punctulatus 2647581 no rank 0 6 6722 1129 Blattabacterium sp. (Periplaneta americana) 0 367488 species 1 1102 Blattabacterium sp. (Blattella germanica) species 624186 0 1 1 1186051 species 0 Blattabacterium sp. (Blaberus giganteus) 1228 1 0 1316444 species Blattabacterium sp. (Nauphoeta cinerea) 1249 0 39768 species 1 939 Blattabacterium sp. (Mastotermes darwiniensis) Blattabacterium sp. (Blatta orientalis) 1075 1 367806 species 0 1 species 1653831 0 Blattabacterium cuenoti 1379 1 1755828 family 0 3 1 1229 Ichthyobacteriaceae 27 genus 1755829 0 2 1 1228 Ichthyobacterium 1201 Ichthyobacterium seriolicida 0 species 242600 1 934 0 family 49546 106 1 206703 Flavobacteriaceae 1 0 genus 336276 3133 3133 1 2615019 no rank 0 Olleya sp. Bg11-27 3133 1 0 species 2058135 1 9955 Maribacter 88 252356 genus 0 5 8259 3 no rank 2615042 0 1 species 1836467 0 Maribacter sp. T28 2659 Maribacter sp. 1_2014MBL_MicDiv 3441 1 species 1644130 0 Maribacter sp. HTCC2170 2159 1 species 313603 0 1608 Maribacter cobaltidurans 0 species 1178778 1 1 10291 Cellulophaga 41 genus 104264 0 4 1 species 979 0 Cellulophaga lytica 3590 0 species 59600 1 3246 Cellulophaga algicola 0 species 76594 1 3414 Cellulophaga baltica 1 0 1518147 genus 3252 3252 Wenyingzhuangia fucanilytica 1790137 species 0 1 4386 2700084 genus 0 1 Lutibacter sp. LPB0138 4386 1 0 1850246 species 3 0 358023 genus 2 1 4113 Lutibacter 1 0 species 1622118 Lutibacter profundi 4110 4 0 genus 261827 2 1 3781 Algibacter 3777 Algibacter alginicilyticus 0 species 1736674 1 31 genus 104267 0 5 1 13968 Tenacibaculum 1 0 species 669041 Tenacibaculum dicentrarchi 2894 1 584609 species 0 Tenacibaculum jejuense 4669 3524 Tenacibaculum todarodis 0 species 1850252 1 2850 Tenacibaculum maritimum 0 107401 species 1 2 0 83612 genus 2 1 2741 Psychroflexus 1 species 57029 0 Psychroflexus torquis 2739 24970 Flavobacterium 1 genus 237 0 9 52 Flavobacterium gilvum 2334 1 0 1492737 species 1674 Flavobacterium crassostreae 0 1763534 species 1 Flavobacterium psychrophilum 2472 1 0 species 96345 1 species 312277 0 Flavobacterium indicum 3310 4643 Flavobacterium columnare 0 species 996 1 1 1306519 species 0 Flavobacterium commune 2051 6139 Flavobacterium johnsoniae 986 species 0 1 1 55197 species 0 Flavobacterium branchiophilum 2295 5 363408 genus 0 253 Nonlabens 8719 1 319236 species 0 1 1936 Nonlabens sediminis 1 species 328515 0 Nonlabens dokdonensis 2324 no rank 2615035 0 2 4206 Nonlabens sp. MIC269 2022 1 0 1476901 species 2184 Nonlabens sp. MB-3u-79 0 species 2058134 1 5 0 292691 genus 30 Gramella 6196 1 1075 Gramella flava 1486245 species 0 1 species 2126553 0 1 1662 Gramella sp. SH35 1578 Gramella sp. LPB0144 0 1913577 species 1 Gramella forsetii 1851 1 0 411153 species 0 393005 genus 1 2520 0 2069432 species 1 2520 Tamlana sp. UJ94 1 Lacinutrix 10619 91 4 291183 genus 0 6999 2 2647285 no rank 0 0 983544 species 1 3492 Lacinutrix sp. 5H-3-7-4 1 species 2057808 0 Lacinutrix sp. Bg11-31 3507 3529 Lacinutrix venerupis 0 1486034 species 1 genus 76831 0 5 112 6642 Myroides 1 0 76832 species 1 1646 Myroides odoratimimus 3208 2 0 2642485 no rank 1 species 1583100 0 Myroides sp. A21 1587 1621 Myroides sp. ZB35 1458492 species 0 1 1 species 480520 0 Myroides profundi 1676 Muricauda 2481 1 3 0 111500 genus 5 1 species 111501 0 Muricauda ruestringensis 1601 1 516051 species 0 Muricauda lutaonensis 875 1 0 genus 1204360 3449 3449 Siansivirga zeaxanthinifaciens 0 762954 species 1 2083 1 genus 143222 0 1 0 2633436 no rank 2083 1 1729720 species 0 Salegentibacter sp. T436 2083 1 2 112040 genus 0 1 Zobellia 1098 1097 Zobellia galactanivorans 0 species 63186 1 Capnocytophaga 15915 1 15 0 1016 genus 140 Capnocytophaga cynodegmi 1464 1 0 28189 species 5660 0 no rank 2640652 6 0 1705617 species 1 717 Capnocytophaga sp. oral taxon 323 Capnocytophaga sp. H4358 1068 1 1945658 species 0 1 species 209053 0 Capnocytophaga sp. ChDC OS43 1000 Capnocytophaga sp. H2931 945 1 0 species 1945657 1 1316596 species 0 Capnocytophaga sp. oral taxon 878 1246 0 species 1316593 1 684 Capnocytophaga sp. oral taxon 864 677 Capnocytophaga haemolytica species 45243 0 1 860 Capnocytophaga gingivalis 0 1017 species 1 809 Capnocytophaga ochracea 0 species 1018 1 0 327575 species 1 907 Capnocytophaga leadbetteri 0 species 28188 1 1690 Capnocytophaga canimorsus 0 1019 species 1 2615 Capnocytophaga sputigena 1093 Capnocytophaga stomatis 0 species 1848904 1 1 1209327 genus 0 2 1 2932 Flavivirga 2931 Flavivirga eckloniae species 1803846 0 1 14 3 0 genus 225842 1 Formosa 4955 4941 2 no rank 2644710 0 1 species 1336795 0 Formosa sp. Hel3_A1_48 2818 Formosa sp. Hel1_33_131 2123 1 0 1336794 species 1240 0 genus 1176327 1 no rank 2636237 0 1 1240 Aureitalea sp. RR4-38 1240 1 0 species 2094025 51 4 326319 genus 0 1 Dokdonia 6873 2763 Dokdonia donghaensis species 326320 0 1 2 0 no rank 2615033 4059 0 313590 species 1 1989 Dokdonia sp. MED134 Dokdonia sp. 4H-3-7-5 2070 1 0 983548 species 0 252306 genus 2 11 585 Robiginitalea 1 1 0 species 252307 Robiginitalea biformata 574 22 3 286104 genus 0 1 Winogradskyella 7314 7292 0 no rank 2615021 2 Winogradskyella sp. J14-2 3615 1 0 species 1936080 3677 Winogradskyella sp. PG-2 754409 species 0 1 genus 178469 0 1 2310 Arenibacter algicola 2310 1 0 species 616991 1462 0 genus 389486 1 1462 1 no rank 2648869 0 1462 Sediminicola sp. YIK13 0 1453352 species 1 21099 Polaribacter 1 0 genus 52959 6 155 4555 Polaribacter vadi species 1774273 0 1 4808 Polaribacter reichenbachii 0 996801 species 1 11581 3 0 196858 no rank 4138 Polaribacter sp. BM10 species 1529069 0 1 3846 Polaribacter sp. MED152 313598 species 0 1 3597 Polaribacter sp. ALD11 species 2058137 0 1 2 0 61432 no rank 3770 531844 species 0 1 684 Flavobacteriaceae bacterium 3519-10 3086 Flavobacteriaceae bacterium UJ101 0 1150389 species 1 1 Zunongwangia 4365 1 2 0 genus 417127 1 0 species 398743 Zunongwangia profunda 4364 3528 0 1649495 genus 1 3528 0 2622645 no rank 1 1 1936081 species 0 Seonamhaeicola sp. S2-3 3528 1 0 216431 genus 2765 Croceibacter atlanticus 2765 1 species 313588 0 2 0 genus 153265 7 Aequorivita 2259 1 0 101385 species 1 2252 Aequorivita sublithincola 1582 2 0 1853230 family 12 genus 332102 0 2 1 1582 Fluviicola Fluviicola taffensis 1570 1 0 191579 species 3311 4 0 313602 no rank 649 Candidatus Walczuchella 1 0 genus 1940138 2 1 Candidatus Walczuchella monophlebidarum 648 1 0 species 1415657 2 336809 genus 0 11 Candidatus Sulcia 2662 1 2651 Candidatus Sulcia muelleri species 336810 0 1 0 2762318 family 20 32245 10 2782232 no rank 0 16381 1 genus 2782228 0 867 1 0 species 536441 Chryseobacterium taklimakanense 867 79 9 0 59732 genus 1 Chryseobacterium 15514 1 species 1324352 0 Chryseobacterium gallinarum 1328 1 253 species 0 Chryseobacterium indologenes 2974 Chryseobacterium piperi 1746 1 0 558152 species 674 Chryseobacterium camelliae 0 1265445 species 1 5185 2593645 no rank 0 3 Chryseobacterium sp. StRB126 1818 1 species 878220 0 Chryseobacterium sp. T16E-39 1830 1 0 2015076 species 1 0 1721091 species Chryseobacterium sp. IHB B 17019 1537 Chryseobacterium glaciei 3528 1 species 1685010 0 1 0 34084 genus 2389 Riemerella anatipestifer 2389 1 species 34085 0 Ornithobacterium 1090 1 2 0 genus 28250 1 1 species 28251 0 Ornithobacterium rhinotracheale 1089 1 Elizabethkingia 11272 108 6 genus 308865 0 1117645 species 0 1 3691 Elizabethkingia anophelis 1 0 238 species Elizabethkingia meningoseptica 1853 1990 Elizabethkingia genomosp. 3 0 species 1756149 1 1756150 species 0 1 1376 Elizabethkingia genomosp. 4 species 172045 0 1 2254 Elizabethkingia miricola 0 genus 1013 1 1113 1 0 1014 species Weeksella virosa 1113 Bacteroidia 31129 1 70 0 class 200643 58 Bacteroidales 24889 1 57 0 order 171549 76 1 911 Rikenellaceae 2 0 171550 family 5 genus 1611681 0 2 3 462 Mucinivorans 1 1 0 1433126 species Mucinivorans hirudinis 459 1 Alistipes 447 2 2 genus 239759 0 Alistipes finegoldii 445 1 species 214856 0 family 1853231 0 2 731 2 genus 283168 0 6 Odoribacter 731 1 1 28118 species 0 Odoribacter splanchnicus 725 0 2005525 family 7 9 2109 Tannerellaceae 1 Parabacteroides 1167 1 3 0 375288 genus 5 1 species 823 0 Parabacteroides distasonis 559 603 1 0 no rank 2649774 Parabacteroides sp. CT06 603 1 species 2025876 0 195950 genus 0 3 6 933 Tannerella 1 species 28112 0 1 481 Tannerella forsythia 446 1 0 2620507 no rank 1 0 712710 species Tannerella sp. oral taxon HOT-286 446 453 0 no rank 185291 1 Bacteroidales bacterium CF 453 1 species 1400053 0 Bacteroidaceae 6015 1 11 0 815 family 21 5994 Bacteroides 1 0 genus 816 10 43 1 0 species 817 Bacteroides fragilis 1295 1 0 species 290053 Bacteroides helcogenes 473 0 818 species 1 806 Bacteroides thetaiotaomicron 1 0 species 47678 Bacteroides caccae 429 Bacteroides cellulosilyticus 731 1 246787 species 0 1 28119 species 0 Bacteroides zoogleoformans 305 species 28116 0 1 750 Bacteroides ovatus 619 Bacteroides heparinolyticus 28113 species 0 1 543 Bacteroides caecimuris 0 species 1796613 1 1170 0 2005523 family 2 2 346096 genus 0 6 Paludibacter 1170 1 0 185300 species 1 1164 Paludibacter propionicigenes 4893 0 333046 no rank 4 2671 3 genus 909656 0 1 0 357276 species Bacteroides dorei 776 1276 Bacteroides salanitronis 0 species 376805 1 Bacteroides vulgatus 619 1 0 species 821 2222 1 genus 511434 0 Candidatus Azobacteroides pseudotrichonymphae 2222 1 0 species 511435 2135 Dysgonamonadaceae 1 family 2005520 0 6 4 1 Proteiniphilum 610 7 2 294702 genus 0 1 1642647 species 0 Proteiniphilum saccharofermentans 603 1 1153 Fermentimonas 7 0 genus 1784836 2 0 1562970 species 1 1146 Fermentimonas caenicola 1 0 307628 genus 368 368 Petrimonas mucosa 1642646 species 0 1 Barnesiellaceae 278 1 3 0 2005519 family 4 397864 genus 0 2 2 274 Barnesiella 1 Barnesiella viscericola 272 1 0 species 397865 Porphyromonadaceae 994 1 4 family 171551 0 9 1 Porphyromonas 985 12 3 0 836 genus 639 Porphyromonas gingivalis 0 species 837 1 0 28123 species 1 334 Porphyromonas asaccharolytica 5124 Prevotellaceae 1 0 family 171552 11 7 5117 Prevotella 1 0 838 genus 10 23 642 Prevotella ruminicola 0 species 839 1 Prevotella jejuni 472 1 1177574 species 0 644 2638335 no rank 0 1 1 0 652716 species Prevotella sp. oral taxon 299 644 species 28132 0 1 514 Prevotella melaninogenica 1 species 28129 0 Prevotella denticola 198 1 0 species 76123 Prevotella enoeca 293 399 Prevotella dentalis 0 52227 species 1 species 28131 0 1 1514 Prevotella intermedia 0 589436 species 1 418 Prevotella fusca order 1970189 0 12 31 6182 Marinilabiliales 1 6 3 family 1970190 0 1 Salinivirgaceae 1223 1 Salinivirga 1217 8 2 genus 1970191 0 1 1307839 species 0 Salinivirga cyanobacteriivorans 1209 1 0 family 1573805 2 1 1923 Marinifilaceae genus 2060722 0 1 1922 1 0 species 1717717 Marinifilaceae bacterium SPP2 1922 3 family 1471398 0 3 Prolixibacteraceae 1724 1 0 genus 1471399 2 10 1721 Draconibacterium 1 Draconibacterium orientale 1711 1 0 species 1168034 Marinilabiliaceae 1281 1 3 0 558415 family 2 1 1279 Alkalitalea 17 0 genus 1193324 2 Alkalitalea saponilacus 1262 1 0 species 889453 0 phylum 1134404 7 3185 9 class 795747 0 7 1 3185 Ignavibacteria 1 3176 Ignavibacteriales 14 order 795748 0 6 2501 Ignavibacteriaceae 1 0 795749 family 3 19 1 Ignavibacterium 2482 8 2 0 genus 795750 Ignavibacterium album 2474 1 591197 species 0 1 0 family 1334117 2 1 661 Melioribacteraceae 660 1 genus 1134403 0 1 1134405 species 0 Melioribacter roseus 660 8555 1090 phylum 0 21 Chlorobia 8555 1 21 class 191410 0 26 8529 Chlorobiales 1 0 order 191411 20 62 58 family 191412 0 19 1 8467 Chlorobiaceae 619 genus 100715 0 1 0 100716 species 1 619 Chloroherpeton thalassium 91 5 1101 genus 0 1 Prosthecochloris 1743 2632826 no rank 0 3 1308 0 species 1868325 1 420 Prosthecochloris sp. CIB 2401 387 Prosthecochloris sp. GSB1 species 281093 0 1 1 0 species 1974213 Prosthecochloris sp. HL-130-GSB 501 344 Prosthecochloris aestuarii 0 species 1102 1 4898 8 0 no rank 274493 genus 1099 0 3 11 776 Pelodictyon 1 491 Pelodictyon phaeoclathratiforme species 34090 0 1 1 0 species 1100 Pelodictyon luteolum 274 99 5 1091 genus 0 1 Chlorobium 4122 Chlorobium phaeovibrioides 275 1 species 1094 0 Chlorobium chlorochromatii 534 1 species 337090 0 Chlorobium phaeobacteroides 2141 1 0 1096 species species 1092 0 1 1073 Chlorobium limicola 1149 Chlorobaculum 1 0 genus 256319 4 119 species 1097 0 1 285 Chlorobaculum tepidum 274537 species 0 1 376 Chlorobaculum limnaeum Chlorobaculum parvum 369 1 0 species 274539 8 0 142182 phylum 3465 20 8 219685 class 0 1 Gemmatimonadetes 3465 25 219686 order 0 7 1 3445 Gemmatimonadales 1 Gemmatimonadaceae 3420 36 6 0 family 219687 2 1706036 genus 0 6 Gemmatirosa 1820 1 species 861299 0 1 1814 Gemmatirosa kalamazoonesis Gemmatimonas 1564 1 3 0 173479 genus 25 species 173480 0 1 802 Gemmatimonas aurantiaca Gemmatimonas phototrophica 737 1 species 1379270 0 1 phylum 456828 0 1270 1270 1 0 genus 456826 Candidatus Cloacimonas acidaminovorans 1270 1 0 456827 species 4 0 65842 phylum 1929 class 204430 0 4 9 1929 Fibrobacteria 1 Fibrobacterales 1920 1 3 order 218872 0 1 6 204431 family 0 2 1 1919 Fibrobacteraceae 1913 1 0 genus 832 1 0 species 833 Fibrobacter succinogenes 1913 5779154 1783272 clade 0 1693 336 0 no rank 1859062 2 Thermobaculum 336 1 2 genus 262406 0 7 1 166501 species 0 Thermobaculum terrenum 329 9453 Chloroflexi 1 0 phylum 200795 42 1 1382928 class 0 5 7 1664 Ardenticatenia 1 12 0 order 1382929 4 1 1657 Ardenticatenales 1 1645 Ardenticatenaceae 7 family 1382930 0 3 1 Candidatus Promineofilum 1638 1 2 1988031 genus 0 Candidatus Promineofilum breve 1637 1 0 1806508 species class 32061 0 10 5 3453 Chloroflexia 1 Chloroflexales 3448 1 9 32064 order 0 19 0 suborder 1508594 4 2159 0 1106 family 4 2159 Chloroflexus 2159 1 4 1107 genus 0 14 1 0 species 152260 Chloroflexus aggregans 1164 1 981 Chloroflexus aurantiacus 490 0 species 1108 2 1 strain 480224 0 Chloroflexus sp. Y-400-fl 491 1270 0 suborder 1508595 4 1 1270 Roseiflexaceae 5 1508635 family 0 4 genus 120961 0 3 3 1265 Roseiflexus 1 120962 species 0 1 723 Roseiflexus castenholzii 539 1 no rank 2609473 0 539 Roseiflexus sp. RS-1 0 357808 species 1 947 0 class 475962 3 5 order 475963 0 3 1 947 Caldilineales family 475964 0 2 942 4 2 0 genus 233191 1 Caldilinea 942 938 Caldilinea aerophila species 133453 0 1 class 189775 0 8 1 1122 Thermomicrobia 1 Thermomicrobiales 276 1 3 order 189776 0 4 189777 family 0 2 3 272 Thermomicrobiaceae 1 1 genus 499 0 269 500 species 0 1 269 Thermomicrobium roseum 0 85000 subclass 4 845 0 85001 order 4 11 845 Sphaerobacterales 1 834 3 255728 suborder 0 7 3 85002 family 0 1 Sphaerobacteraceae 834 0 genus 2056 2 9 827 Sphaerobacter 1 0 species 2057 1 818 Sphaerobacter thermophilus 0 292625 class 7 1 1078 Anaerolineae 1 9 6 292629 order 0 1 Anaerolineales 1077 1068 Anaerolineaceae 1 0 family 292628 5 16 404 Brevefilum 1 genus 2019482 0 2 3 0 species 1986204 1 401 Brevefilum fermentans 348 1 233189 genus 0 348 Anaerolinea thermophila 0 species 167964 1 1 no rank 1324991 0 300 1 species 1889813 0 Anaerolineaceae bacterium oral taxon 439 300 1 1188 Dehalococcoidia 8 301297 class 0 8 14 3 0 670486 genus 1 Dehalogenimonas 338 106 Dehalogenimonas lykanthroporepellens 0 species 552810 1 1 species 1839801 0 Dehalogenimonas formicexedens 218 4 1202465 order 0 842 1 1202464 family 0 4 1 842 Dehalococcoidaceae 3 61434 genus 0 10 Dehalococcoides 841 1 173 1 0 237581 no rank 173 Dehalococcoides sp. UCH007 0 1522671 species 1 1 61435 species 0 Dehalococcoides mccartyi 658 16 0 201174 phylum 646 1 489223 Actinobacteria 1530 0 no rank 1752188 4 1 0 1848756 species Actinobacteria bacterium IMCC26103 472 0 1848255 species 1 235 Actinobacteria bacterium IMCC25003 Actinobacteria bacterium IMCC19121 477 1 species 1848754 0 0 species 1848755 1 346 Actinobacteria bacterium IMCC26077 6379 Coriobacteriia 1 0 84998 class 32 35 0 order 1643822 17 25 3977 Eggerthellales 1 16 1643826 family 0 46 Eggerthellaceae 3952 1 2 84162 genus 0 2 Cryptobacterium 219 1 Cryptobacterium curtum 217 1 0 species 84163 22 3 genus 84111 0 1 Eggerthella 983 84112 species 0 1 697 Eggerthella lenta no rank 2648737 0 1 264 264 Eggerthella sp. YY7918 species 502558 0 1 1981050 genus 0 1 392 1 0 1944646 species Phoenicibacter massiliensis 392 2 2 0 genus 447020 1 Adlercreutzia 422 446660 species 0 1 420 Adlercreutzia equolifaciens 1 280 Denitrobacterium 3 0 genus 79603 2 1 species 79604 0 Denitrobacterium detoxificans 277 0 genus 84108 2 3 349 Slackia 1 1 0 species 84110 Slackia heliotrinireducens 346 3 genus 644652 0 13 Gordonibacter 1261 1 1 0 1841863 species Gordonibacter massiliensis 587 species 1335613 0 1 661 Gordonibacter urolithinfaciens 36 14 0 order 84999 1 Coriobacteriales 2367 Coriobacteriaceae 699 1 6 family 84107 0 2 183 Coriobacterium 1 genus 33870 0 2 9 0 33871 species 1 174 Coriobacterium glomerans 0 102106 genus 2 4 233 Collinsella 1 229 Collinsella aerofaciens 74426 species 0 1 281 1 84113 no rank 0 0 1531429 species 1 281 Coriobacteriaceae bacterium 68-1-3 family 1643824 0 7 13 1632 Atopobiaceae 1 0 133925 genus 4 5 1356 Olsenella 1 0 133926 species 1 238 Olsenella uli Olsenella sp. Marseille-P2300 442 1 species 1805478 0 671 2638792 no rank 0 1 Olsenella sp. oral taxon 807 671 1 0 712411 species Atopobium 1 1 1380 genus 0 262 genus 2767353 0 1 1 0 species 1382 Atopobium parvulum 262 Actinobacteria 471142 1 591 1760 class 0 1574 20 order 85008 0 24 Micromonosporales 15749 1 0 family 28056 19 112 15725 Micromonosporaceae 1 1 6703 Actinoplanes 52 0 genus 1865 6 1 0 1866 species Actinoplanes missouriensis 1315 no rank 2626549 0 3 4127 1 0 2033844 species Actinoplanes sp. SE50 1377 Actinoplanes sp. SE50/110 1377 1 0 134676 species 649831 species 0 1 1373 Actinoplanes sp. N902-109 0 species 196914 1 1209 Actinoplanes friuliensis Plantactinospora 4177 1 4 genus 673534 0 42 4135 0 2631981 no rank 3 0 species 2071627 1 1522 Plantactinospora sp. BB1 0 species 2108470 1 1382 Plantactinospora sp. BC1 Plantactinospora sp. KBS50 1231 1 0 species 2024580 20 1873 genus 0 4 1 3180 Micromonospora 47850 species 0 1 1158 Micromonospora aurantiaca 0 no rank 2617518 1 1032 Micromonospora sp. L5 1032 1 0 648999 species species 1003110 0 1 970 Verrucosispora maris 0 genus 84593 1 4 Verrucosispora Salinispora 1549 1 3 168694 genus 0 35 1 168695 species 0 Salinispora tropica 748 Salinispora arenicola 766 1 0 168697 species 0 85007 order 160 460 102307 Corynebacteriales 1 91 31 0 family 85025 1 Nocardiaceae 26741 19269 Rhodococcus 1 0 1827 genus 23 385 132919 species 0 1 1247 Rhodococcus jostii 1 0 species 37919 Rhodococcus opacus 3231 6983 12 0 no rank 192944 species 1570939 0 1 539 Rhodococcus sp. 2G 0 species 1564114 1 489 Rhodococcus sp. B7740 344 Rhodococcus sp. WMMA185 0 679318 species 1 1805827 species 0 1 1116 Rhodococcus sp. MTM3W5.2 Rhodococcus sp. H-CA8f 446 1 0 1727214 species species 1653479 0 1 428 Rhodococcus sp. PBTS 2 Rhodococcus sp. YL-1 477 1 0 1045808 species 681 Rhodococcus sp. p52 0 species 935199 1 Rhodococcus sp. PBTS 1 598 1 0 1653478 species 1 species 1723645 0 Rhodococcus sp. 008 461 Rhodococcus sp. BH4 399 1 0 species 1807790 1005 Rhodococcus sp. WB1 species 1033922 0 1 Rhodococcus erythropolis 1405 1 0 species 1833 1 0 1829 species Rhodococcus rhodochrous 631 103816 species 0 1 915 Rhodococcus pyridinivorans 714 Rhodococcus fascians 0 species 1828 1 0 334542 species 1 752 Rhodococcus qingshengii 1265 Rhodococcus ruber species 1830 0 1 Rhodococcus aetherivorans 1043 1 191292 species 0 698 Rhodococcus hoagii 0 species 43767 1 genus 1817 0 7 61 7381 Nocardia 1 1 37332 species 0 Nocardia seriolae 907 1 0 species 455432 Nocardia terpenica 947 species 37329 0 1 1148 Nocardia farcinica 1 species 37326 0 Nocardia brasiliensis 1983 species 135487 0 1 1392 Nocardia cyriacigeorgica 37330 species 0 1 943 Nocardia nova 0 family 85029 3 1 1299 Dietziaceae 1 1298 2 genus 37914 0 1 2617939 no rank 0 877 Dietzia sp. oral taxon 368 877 1 712270 species 0 0 499555 species 1 421 Dietzia timorensis 1 45406 Mycobacteriaceae 100 0 family 1762 57 1 Hoyosella 380 3 2 0 697025 genus 0 639313 species 1 377 Hoyosella subflava 1866885 genus 0 13 10623 512 Mycobacterium fortuitum 0 species 1766 1 1 species 110539 0 Mycobacterium vanbaalenii 933 1 0 36814 species Mycobacterium rhodesiae 619 598 Mycobacterium litorale 0 758802 species 1 Mycobacterium vaccae 957 1 0 1810 species 0 134601 species 1 827 Mycobacterium goodii 1795 species 0 1 547 Mycobacterium neoaurum 1 1772 species 0 Mycobacterium smegmatis 933 1 0 species 1771 Mycobacterium phlei 940 1804 species 0 1 1269 Mycobacterium gilvum 1 species 1797 0 Mycobacterium thermoresistibile 553 857 Mycobacterium chubuense species 1800 0 1 1 species 1791 0 Mycobacterium aurum 1078 2 0 genus 1073531 1730 1 species 1788 0 Mycobacterium terrae 832 Mycobacterium sinense 898 1 0 species 875328 1 25212 Mycobacterium 1042 0 1763 genus 34 species 1768 0 1 759 Mycobacterium kansasii 8618 no rank 2642494 0 13 1 0 1545728 species Mycobacterium sp. EPa45 589 1 0 1168287 species Mycobacterium sp. MOTT36Y 218 1 species 1920667 0 Mycobacterium sp. WY10 652 544 Mycobacterium sp. VKM Ac-1817D species 1273687 0 1 Mycobacterium sp. MCS 703 1 0 species 164756 1 0 212767 species Mycobacterium sp. JS623 1289 679 Mycobacterium sp. PYR15 0 2051552 species 1 Mycobacterium sp. QIA-37 385 1 1561223 species 0 1 species 1682113 0 Mycobacterium sp. YC-RL4 676 1 0 species 1570328 Mycobacterium sp. NRRL B-3805 547 0 species 189918 1 786 Mycobacterium sp. KMS 1 0 species 1879023 Mycobacterium sp. djl-10 846 1 0 164757 species Mycobacterium sp. JLS 704 species group 77643 0 4 2579 1773 species 0 3 809 2201 Mycobacterium tuberculosis 1 681 Mycobacterium africanum biotype 33894 0 1 0 1765 biotype 1 711 Mycobacterium bovis 78331 species 0 1 378 Mycobacterium canettii 769 Mycobacterium ulcerans 0 1809 species 1 653 0 species group 2249310 1 Mycobacterium shigaense 653 1 722731 species 0 0 species group 120793 8 6672 1 0 species 339268 Mycobacterium colombiense 664 1 species 701042 0 Mycobacterium marseillense 479 448 4 0 species 1767 1 Mycobacterium intracellulare 1774 1 subspecies 222805 0 Mycobacterium chimaera 793 1 subspecies 35617 0 Mycobacterium indicus pranii 228 Mycobacterium yongonense 305 1 0 1203599 subspecies 1764 species 0 1 3539 Mycobacterium avium 1 0 species 1138383 Mycobacterium paraintracellulare 216 1077 Mycobacterium dioxanotrophicus 0 species 482462 1 839 Mycobacterium liflandii 0 species 261524 1 species 1769 0 1 195 Mycobacterium leprae 1 species 1781 0 Mycobacterium marinum 1608 0 species 29311 1 401 Mycobacterium haemophilum 5 genus 670516 0 7361 1 0 species 83262 Mycobacterium immunogenum 484 1 1774 species 0 Mycobacterium chelonae 489 Mycobacterium saopaulense 322 1 1578165 species 0 1 0 1520670 species Mycobacterium stephanolepidis 379 0 species 36809 1 5687 Mycobacterium abscessus 4542 Gordoniaceae 1 0 family 85026 9 9 34 2053 genus 0 8 1 4533 Gordonia 646 Gordonia polyisoprenivorans 0 84595 species 1 1 0 species 1136941 Gordonia phthalatica 662 1004901 species 0 1 585 Gordonia iterans species 2054 0 1 795 Gordonia bronchialis no rank 2657482 0 2 1120 Gordonia sp. KTR9 635 1 337191 species 0 Gordonia sp. YC-JH1 485 1 0 species 2059875 1 0 species 2055 Gordonia terrae 691 60 1653 family 0 52 1 21454 Corynebacteriaceae 0 genus 1716 51 195 21394 Corynebacterium 1 1 0 species 1652495 Corynebacterium crudilactis 299 1 0 1697 species Corynebacterium ammoniagenes 223 1 0 species 136857 Corynebacterium testudinoris 332 1 0 35755 species Corynebacterium kutscheri 313 species 1121358 0 1 361 Corynebacterium doosanense 299 Corynebacterium stationis 0 species 1705 1 species 1717 0 1 468 Corynebacterium diphtheriae 1 species 42817 0 Corynebacterium argentoratense 399 Corynebacterium frankenforstense 510 1 species 1230998 0 185 Corynebacterium epidermidicanis 0 species 1050174 1 927 Corynebacterium glutamicum 0 species 1718 1 Corynebacterium jeikeium 400 1 0 38289 species 0 191493 species 1 518 Corynebacterium sphenisci 1 0 152794 species Corynebacterium efficiens 331 species 187491 0 1 349 Corynebacterium glaucum 445 Corynebacterium halotolerans 0 225326 species 1 161895 species 0 1 316 Corynebacterium phocae 612 Corynebacterium variabile 0 1727 species 1 Corynebacterium casei 248 1 0 160386 species 228 Corynebacterium singulare species 161899 0 1 1 1223514 species 0 Corynebacterium humireducens 679 259 Corynebacterium lactis 1231000 species 0 1 Corynebacterium vitaeruminis 648 1 38305 species 0 1 575200 species 0 Corynebacterium maris 483 221 Corynebacterium aurimucosum 0 species 169292 1 352 Corynebacterium glyciniphilum 0 species 1404244 1 515 0 no rank 2624378 2 0 1487956 species 1 202 Corynebacterium sp. ATCC 6931 Corynebacterium sp. NML98-0116 313 1 0 species 702967 0 161896 species 1 202 Corynebacterium camporealensis Corynebacterium deserti 447 1 species 1408191 0 0 species 401472 1 269 Corynebacterium ureicelerivorans 0 349751 species 1 476 Corynebacterium marinum Corynebacterium aquilae 511 1 species 203263 0 Corynebacterium falsenii 412 1 species 108486 0 1 0 species 28028 Corynebacterium flavescens 265 1 92706 species 0 [Brevibacterium] flavum 379 289 Corynebacterium mustelae species 571915 0 1 1 0 species 43770 Corynebacterium striatum 559 303 Corynebacterium ulcerans 0 65058 species 1 1 0 species 35757 Corynebacterium cystitidis 416 Corynebacterium uterequi 3442 1 1072256 species 0 153 Corynebacterium kroppenstedtii species 161879 0 1 290 Corynebacterium pseudotuberculosis 0 species 1719 1 Corynebacterium urealyticum 244 1 species 43771 0 258224 species 0 1 162 Corynebacterium resistens species 191610 0 1 244 Corynebacterium atypicum 279 Corynebacterium callunae species 1721 0 1 1 species 89154 0 Corynebacterium terpenotabidum 485 1 0 156978 species Corynebacterium imitans 247 1 146827 species 0 Corynebacterium simulans 205 2 0 316606 family 364 1 genus 286801 0 2 1 364 Segniliparus 1 0 286802 species Segniliparus rotundus 363 0 family 85028 4 3 1810 Tsukamurellaceae 1 genus 2060 0 3 7 1807 Tsukamurella 1 Tsukamurella paurometabola 615 1 0 species 2061 Tsukamurella tyrosinosolvens 1185 1 57704 species 0 0 no rank 697024 1 231 0 1847725 genus 1 231 231 Lawsonella clevelandensis 1528099 species 0 1 1 Streptosporangiales 8757 33 16 85012 order 0 Streptosporangiaceae 4324 1 5 0 family 2004 29 8 83681 genus 0 2 1 2412 Nonomuraea 2404 0 2593643 no rank 1 1 0 1909395 species Nonomuraea sp. ATCC 55076 2404 1 1883 Streptosporangium 2 0 genus 2000 2 1881 Streptosporangium roseum 2001 species 0 1 901 Thermomonosporaceae 1 2012 family 0 3 13 1 888 Thermomonospora 3 genus 2019 0 2 Thermomonospora curvata 885 1 0 species 2020 Nocardiopsaceae 3499 1 7 family 83676 0 29 6 83677 genus 0 2 1 355 Thermobifida 0 2021 species 1 349 Thermobifida fusca Nocardiopsis 3115 1 4 2013 genus 0 25 1 0 species 2014 Nocardiopsis dassonvillei 1412 Nocardiopsis gilva 1032 1 0 280236 species 1 0 53437 species Nocardiopsis alba 646 no rank 52018 0 1 419 Actinobacteria bacterium IMCC26256 419 1 1650658 species 0 85010 order 0 42 39 35062 Pseudonocardiales 1 217 0 family 2070 41 1 35023 Pseudonocardiaceae 3 2 142577 genus 0 1 Prauserella 761 0 species 530584 1 758 Prauserella marina 0 1813 genus 7 71 7885 Amycolatopsis 1 2145 2 0 2618356 no rank 1002 Amycolatopsis sp. BJA-103 0 species 1911175 1 species 1896961 0 1 1143 Amycolatopsis sp. AA4 1671 Amycolatopsis mediterranei 33910 species 0 1 1 species 208439 0 Amycolatopsis japonica 1058 species 31958 0 1 2006 Amycolatopsis orientalis 934 Amycolatopsis methanolica species 1814 0 1 1835 genus 0 2 2 1133 Saccharopolyspora 1 Saccharopolyspora erythraea 1131 1 0 species 1836 2 genus 165301 0 7 Lentzea 1338 1 0 1586287 species 1 1331 Lentzea guizhouensis 1 6074 Actinoalloteichus 71 0 genus 65496 6 1 species 1470176 0 Actinoalloteichus hoggarensis 1276 2 2644606 no rank 0 2292 0 2072503 species 1 1007 Actinoalloteichus sp. AHMU CJ021 0 species 1612551 1 1285 Actinoalloteichus sp. GBA129-24 1812 Actinoalloteichus sp. ADI127-7 species 1612552 0 1 623 Actinoalloteichus hymeniacidonis species 340345 0 1 22 3 genus 40566 0 1 Actinosynnema 3033 1425 Actinosynnema pretiosum 42197 species 0 1 Actinosynnema mirum 1586 1 0 40567 species genus 2029 0 2 5 1386 Kibdelosporangium 1 species 860235 0 1 1381 Kibdelosporangium phytohabitans 2 0 genus 1851 2 1 766 Saccharomonospora 1 1852 species 0 Saccharomonospora viridis 764 0 674734 genus 2 2 1094 Alloactinosynnema 1 0 no rank 2636053 1 1092 1 0 1653480 species Alloactinosynnema sp. L-07 1092 genus 1847 0 8 92 8686 Pseudonocardia 1 Pseudonocardia dioxanivorans 1424 1 0 species 240495 2619320 no rank 0 6 7170 945 Pseudonocardia sp. HH130629-09 0 1641402 species 1 species 445576 0 1 1322 Pseudonocardia sp. AL041005-10 1399 Pseudonocardia sp. HH130630-07 1690815 species 0 1 Pseudonocardia sp. EC080625-04 998 1 1096868 species 0 0 1688404 species 1 1317 Pseudonocardia sp. EC080610-09 1 0 species 1096856 Pseudonocardia sp. EC080619-01 1189 Kutzneria 1141 1 2 43356 genus 0 12 Kutzneria albida 1129 1 0 species 43357 1 Saccharothrix 1509 9 2 2071 genus 0 1500 Saccharothrix espanaensis 0 species 103731 1 3118 Geodermatophilales 1 0 order 1643682 8 13 28 0 family 85030 7 1 3105 Geodermatophilaceae Modestobacter 931 1 2 0 88138 genus 4 1 0 477641 species Modestobacter marinus 927 Blastococcus 1110 1 2 38501 genus 0 17 Blastococcus saxobsidens 1093 1 0 138336 species 3 0 1860 genus 2 1 1036 Geodermatophilus Geodermatophilus obscurus 1033 1 0 1861 species 0 order 85014 4 9 997 Glycomycetales 1 20 0 family 85034 3 1 988 Glycomycetaceae 968 Stackebrandtia 1 0 genus 283810 2 9 283811 species 0 1 959 Stackebrandtia nassauensis 7 17 0 order 2037 1 Actinomycetales 5096 0 2049 family 16 28 5089 Actinomycetaceae 1 genus 1654 0 9 65 3696 Actinomyces 1 0 111015 species 1 781 Actinomyces radicidentis Actinomyces gaoshouyii 393 1 0 species 1960083 102 Actinomyces pacaensis 0 1852377 species 1 0 no rank 2609248 3 1770 0 species 2081702 1 565 Actinomyces sp. oral taxon 897 1851395 species 0 1 531 Actinomyces sp. Chiba101 Actinomyces sp. oral taxon 414 674 1 712122 species 0 Actinomyces sp. VUL4_3 134 1 0 1912795 species 451 Actinomyces oris 544580 species 0 1 209 1 genus 1653174 0 Actinotignum schaalii 209 1 0 species 59505 2 28263 genus 0 2 1 170 Arcanobacterium Arcanobacterium haemolyticum 168 1 species 28264 0 1 1069494 genus 0 241 0 1661 species 1 241 Trueperella pyogenes 547 0 genus 2050 1 547 Mobiluncus curtisii 0 2051 species 1 198 1 0 genus 2529408 Actinomyces meyeri 198 1 0 species 52773 3 0 1643684 order 797 4 85031 family 0 3 1 797 Nakamurellaceae 793 Nakamurella 1 0 53460 genus 2 4 1 0 species 53461 Nakamurella multipartita 789 3 0 1643683 order 287 287 Acidothermaceae 1 0 family 85032 3 3 1 Acidothermus 284 8 2 0 28048 genus 1 0 28049 species Acidothermus cellulolyticus 276 0 85006 order 144 338 68665 Micrococcales 1 9 0 85021 family 13 Intrasporangiaceae 3229 1 1 776 Intrasporangium 12 0 53357 genus 2 1 53358 species 0 Intrasporangium calvum 764 53457 genus 0 2 13 844 Janibacter 1 0 species 857417 1 831 Janibacter indicus 7 2 267408 genus 0 1 Arsenicicoccus 765 1 0 no rank 2663846 758 758 Arsenicicoccus sp. oral taxon 190 0 species 1658671 1 1 Serinicoccus 831 3 2 0 genus 265976 species 1758689 0 1 828 Serinicoccus sp. JLT9 1 5166 Promicromonosporaceae 21 family 85017 0 9 1 2114 Cellulosimicrobium 4 0 157920 genus 3 0 1710 species 1 948 Cellulosimicrobium cellulans 1162 no rank 2624466 0 1 1 1980001 species 0 Cellulosimicrobium sp. TH-20 1162 1 1089 Xylanimonas 8 186188 genus 0 2 1081 Xylanimonas cellulosilytica 0 186189 species 1 3 254250 genus 0 5 Isoptericola 1942 1 1153 Isoptericola dokdonensis 0 species 372663 1 784 Isoptericola variabilis 0 species 139208 1 1 Brevibacteriaceae 980 21 3 85019 family 0 1 Brevibacterium 959 10 2 0 1696 genus Brevibacterium linens 949 1 species 1703 0 7 0 family 145357 16 Dermacoccaceae 1829 1 1 Kytococcus 426 9 2 0 genus 57499 Kytococcus sedentarius 417 1 species 1276 0 1 Luteipulveratus 658 2 2 0 genus 745364 Luteipulveratus mongoliensis 656 1 species 571913 0 729 Dermacoccus 1 57495 genus 0 2 5 Dermacoccus nishinomiyaensis 724 1 1274 species 0 1 189 Jonesiaceae 1 0 85022 family 3 Jonesia 188 1 2 43673 genus 0 2 Jonesia denitrificans 186 1 0 species 43674 577468 no rank 0 2 228 2 0 genus 2038 2 1 228 Tropheryma 226 Tropheryma whipplei species 2039 0 1 1 954 Beutenbergiaceae 3 125316 family 0 3 Beutenbergia 951 1 2 genus 84756 0 11 940 Beutenbergia cavernae 0 species 84757 1 456 Dermatophilaceae 1 0 family 85018 3 1 1 2 0 1862 genus 1 Dermatophilus 455 species 1863 0 1 454 Dermatophilus congolensis 7831 Dermabacteraceae 1 0 85020 family 10 21 39 6 0 genus 43668 1 Brachybacterium 7094 Brachybacterium sp. VR2415 740 1 0 species 2017485 2623841 no rank 0 1 799 799 Brachybacterium sp. P6-10-X1 1903186 species 0 1 species 1331682 0 1 669 Brachybacterium ginsengisoli 1 2017484 species 0 Brachybacterium sp. VM2412 4126 1 0 species 43669 Brachybacterium faecium 721 0 36739 genus 1 244 244 Dermabacter vaginalis 0 1630135 species 1 2 0 genus 472568 11 Devriesea 472 1 0 472569 species 1 461 Devriesea agamarum 12 0 family 145360 3 1 1037 Sanguibacteraceae 1 Sanguibacter 1025 1 2 0 genus 60919 1024 Sanguibacter keddieii species 60920 0 1 37 0 1268 family 102 Micrococcaceae 17534 1 334 Neomicrococcus 1 1868332 genus 0 2 1 Neomicrococcus aestuarii 333 1 0 556325 species 433 1 0 1742992 genus 0 species 43663 1 433 Paenarthrobacter aurescens 596707 genus 0 2 2 854 Sinomonas 1 852 Sinomonas atrocyanea 0 37927 species 1 Arthrobacter 10242 1 15 0 1663 genus 81 8316 0 no rank 235627 12 1 0 1690248 species Arthrobacter sp. LS16 379 0 1806905 species 1 393 Arthrobacter sp. ZXY-2 1 0 species 1118963 Arthrobacter sp. Rue61a 346 1 0 species 1357915 Arthrobacter sp. QXT-31 602 1 species 290399 0 Arthrobacter sp. FB24 589 Arthrobacter sp. YC-RL1 377 1 0 species 1652545 317 Arthrobacter sp. ATCC 21022 0 species 1771959 1 834 Arthrobacter sp. ERGS1:01 1704044 species 0 1 1494608 species 0 1 698 Arthrobacter sp. PAMC 25486 1 species 2020486 0 Arthrobacter sp. YN 391 1 species 1849032 0 Arthrobacter sp. U41 693 Arthrobacter sp. PGP41 2697 1 0 species 2079227 1 species 656366 0 Arthrobacter alpinus 1234 611 Arthrobacter crystallopoietes 37928 species 0 1 0 2078575 genus 1 412 Arthrobacter sp. IHBB 11108 412 1 1618207 species 0 490 genus 1269 0 1 Micrococcus luteus 490 1 1270 species 0 1 1645 genus 0 209 Renibacterium salmoninarum 209 1 species 1646 0 1 1593 Kocuria 7 genus 57493 0 4 72000 species 0 1 381 Kocuria rhizophila 1 446860 species 0 Kocuria flava 697 508 Kocuria palustris 0 71999 species 1 1 1776 Pseudarthrobacter 9 0 1742993 genus 4 361575 species 0 1 833 Pseudarthrobacter phenanthrenivorans 0 85085 species 1 435 Pseudarthrobacter chlorophenolicus Pseudarthrobacter sulfonivorans 499 1 121292 species 0 4 3 32207 genus 0 1 Rothia 519 43675 species 0 1 363 Rothia mucilaginosa 152 Rothia dentocariosa species 2047 0 1 1 570 Glutamicibacter 9 1742989 genus 0 2 561 Glutamicibacter arilaitensis 256701 species 0 1 3 85016 family 0 6 1 3149 Cellulomonadaceae 1 Cellulomonas 3146 34 5 1707 genus 0 1 0 species 1711 Cellulomonas flavigena 848 0 1708 species 1 894 Cellulomonas fimi 2620175 no rank 0 1 758 Cellulomonas sp. PSBB021 758 1 0 2003551 species 612 Cellulomonas gilvus 0 11 species 1 48 family 85023 0 141 Microbacteriaceae 25745 1 668 3 no rank 1655488 0 clade 1655489 0 3 668 1 668 Rhodoluna 12 genus 529883 0 3 1 529884 species 0 Rhodoluna lacicola 279 1 species 535712 0 Candidatus Rhodoluna planktonica 377 3114 447237 genus 0 1 3114 0 2626248 no rank 1 1795630 species 0 1 3114 Frondihabitans sp. PAMC 28766 5 0 337004 genus 2 1 426 Microcella 0 species 279828 1 421 Microcella alkaliphila 4 2034 genus 0 16 Curtobacterium 2368 1 1 species 69373 0 Curtobacterium pusillum 739 1613 0 257496 no rank 2 species 1561023 0 1 935 Curtobacterium sp. MR_MD2014 1 0 1905847 species Curtobacterium sp. BH-2-1-1 678 14 genus 33882 0 102 Microbacterium 8592 1 620 Microbacterium aurum 36805 species 0 1 300019 species 0 1 635 Microbacterium paludicola 0 2033 species 1 751 Microbacterium testaceum 516 Microbacterium chocolatum 84292 species 0 1 5371 8 no rank 2609290 0 Microbacterium sp. XT11 565 1 0 species 367477 species 2103230 0 1 443 Microbacterium sp. str. 'China' species 1916917 0 1 499 Microbacterium sp. 1.5R 1 0 species 1696072 Microbacterium sp. CGR1 533 Microbacterium sp. PAMC 28756 496 1 1795053 species 0 1 species 1906742 0 Microbacterium sp. BH-3-3-3 1306 526 Microbacterium sp. TPU 3598 0 1938334 species 1 1 1714373 species 0 Microbacterium sp. No. 7 1003 597 Microbacterium hominis 162426 species 0 1 1 Microterricola 555 2 2 genus 518733 0 412690 species 0 1 553 Microterricola viridarii 0 genus 110932 2 4 1486 Leifsonia 1 0 1575 species 1 1482 Leifsonia xyli 962 Agromyces 1 genus 33877 0 2 1 0 species 453304 1 961 Agromyces aureus 3 3 0 genus 33886 1 Rathayibacter 1505 0 145458 species 1 936 Rathayibacter toxicus 566 Rathayibacter tritici 0 33888 species 1 genus 1759331 0 1 716 1 1619308 species 0 Cnuibacter physcomitrellae 716 3553 Clavibacter 1 1573 genus 0 6 49 1 Clavibacter michiganensis 3504 690 5 0 28447 species Clavibacter sepedonicus 993 1 0 subspecies 31964 31963 subspecies 0 1 574 Clavibacter nebraskensis 675 Clavibacter capsici subspecies 1874630 0 1 1 0 subspecies 33014 Clavibacter insidiosus 572 2 0 genus 1434032 2 1 256 Pontimonas 1 0 species 1159327 Pontimonas salivibrio 254 Cryobacterium 1114 1 3 69578 genus 0 8 525 no rank 2649013 0 1 Cryobacterium sp. LW097 525 1 species 1978566 0 0 species 670052 1 581 Cryobacterium arcticum 1 289 Aurantimicrobium 3 0 genus 1705353 2 286 Aurantimicrobium minutum 708131 species 0 1 26 0 85004 order 22 Bifidobacteriales 9585 1 48 family 31953 0 25 1 9563 Bifidobacteriaceae genus 196082 0 1 254 Parascardovia denticolens 254 1 78258 species 0 0 genus 1678 19 56 7996 Bifidobacterium 1 1 0 28025 species Bifidobacterium animalis 353 Bifidobacterium asteroides 262 1 1684 species 0 439 Bifidobacterium bifidum 1681 species 0 1 216816 species 0 1 1014 Bifidobacterium longum 265 Bifidobacterium thermophilum 0 33905 species 1 1 0 species 28026 Bifidobacterium pseudocatenulatum 361 0 species 1685 1 820 Bifidobacterium breve Bifidobacterium indicum 171 1 0 1691 species 1 0 158787 species Bifidobacterium scardovii 514 258 Bifidobacterium angulatum species 1683 0 1 1 0 1680 species Bifidobacterium adolescentis 322 469 Bifidobacterium pseudolongum 0 1694 species 1 537 Bifidobacterium choerinum 0 35760 species 1 141 Bifidobacterium coryneforme species 1687 0 1 1689 species 0 1 337 Bifidobacterium dentium 143 1686 species 0 2 1 474 Bifidobacterium catenulatum 630129 subspecies 0 1 331 Bifidobacterium kashiwanohense 1203 Bifidobacterium actinocoloniiforme 0 species 638619 1 Gardnerella 1000 1 2 genus 2701 0 4 996 Gardnerella vaginalis 0 2702 species 1 196081 genus 0 2 1 265 Scardovia 1 1 0 species 78259 Scardovia inopinata 264 order 85009 0 32 84 13093 Propionibacteriales 1 18 0 31957 family 47 Propionibacteriaceae 6532 1 0 1912216 genus 4 7 1181 Cutibacterium 1 Cutibacterium acnes 518 1 1747 species 0 329 Cutibacterium avidum 33010 species 0 1 Cutibacterium granulosum 327 1 33011 species 0 5 0 genus 72763 23 Tessaracoccus 2247 1 species 1610493 0 1 481 Tessaracoccus flavus 558 Tessaracoccus flavescens 399497 species 0 1 637 Tessaracoccus aquimaris 1332264 species 0 1 1 2635419 no rank 0 548 species 1909732 0 1 548 Tessaracoccus sp. T2.5-30 203133 genus 0 1 175 175 2633994 no rank 0 1 0 1871034 species 1 175 Propionimicrobium sp. Marseille-P3275 636 Microlunatus 1 0 29404 genus 2 8 1 species 29405 0 Microlunatus phosphovorus 628 797 0 1912215 genus 1 797 Acidipropionibacterium acidipropionici species 1748 0 1 379 1 genus 2801844 0 1750 species 0 1 379 Pseudopropionibacterium propionicum 3 genus 1743 0 3 1 1070 Propionibacterium 901 Propionibacterium freudenreichii 0 1744 species 1 166 1 no rank 2608905 0 0 671223 species 1 166 Propionibacterium sp. oral taxon 193 Nocardioidaceae 6477 1 13 0 family 85015 46 1 Aeromicrobium 760 3 2 0 2040 genus 757 Aeromicrobium erythreum 2041 species 0 1 0 2044 genus 2 3 1251 Pimelobacter 1 1248 Pimelobacter simplex 0 2045 species 1 1 1002 Kribbella 29 0 genus 182639 2 0 species 182640 1 973 Kribbella flavida 4 1839 genus 0 81 Nocardioides 2928 1 1 species 2045452 0 Nocardioides sp. 78 639 1 no rank 2615069 0 926 0 species 196162 1 926 Nocardioides sp. JS614 Nocardioides dokdonensis 1282 1 0 450734 species 5 0 116071 genus 2 1 490 Micropruina Micropruina glycogenica 485 1 species 75385 0 Streptomycetales 180670 1 82 0 85011 order 324 180346 Streptomycetaceae 1 family 2062 0 81 418 1 12209 Kitasatospora 58 2063 genus 0 5 0 no rank 2633591 1 1769 1 0 species 2018025 Kitasatospora sp. MMS16-BH015 1769 1 species 2066 0 Kitasatospora setae 3269 68173 species 0 1 5629 Kitasatospora albolonga 0 species 1894 1 1484 Kitasatospora aureofaciens Streptomyces 167719 1 75 genus 1883 0 1803 Streptomyces ambofaciens 1896 1 1889 species 0 1 1969 species 0 Streptomyces chartreusis 1104 Streptomyces venezuelae 3408 1 species 54571 0 species 1642299 0 1 2283 Streptomyces alfalfae Streptomyces cattleya 1154 1 0 species 29303 1263 Streptomyces violaceoruber 0 species 1935 1 Streptomyces lividans 1599 1 1916 species 0 species 1169025 0 1 1139 Streptomyces pratensis Streptomyces albulus 21133 1 68570 species 0 1603 Streptomyces xinghaiensis 1038928 species 0 1 1 species 1930 0 Streptomyces scabiei 2094 1 408015 species 0 Streptomyces xiamenensis 942 species 47763 0 1 4342 Streptomyces lydicus 0 1616117 species 1 2799 Streptomyces formicae 40884 24 2593676 no rank 0 1055 Streptomyces sp. PAMC 26508 0 species 1265601 1 1730 Streptomyces sp. Mg1 0 species 465541 1 1292 Streptomyces sp. WAC00288 species 2094021 0 1 0 species 1751294 1 1087 Streptomyces sp. 4F Streptomyces sp. FR-008 2492 1 0 206662 species 0 1495638 species 1 2607 Streptomyces sp. M56 1425 Streptomyces sp. MOE7 0 species 1961713 1 2112 Streptomyces sp. Sge12 1972846 species 0 1 2807 Streptomyces sp. SAT1 0 species 1849967 1 species 1561022 0 1 1376 Streptomyces sp. CCM_MD2014 1 0 species 2135430 Streptomyces sp. P3 2532 1 0 1837283 species Streptomyces sp. S8 1126 Streptomyces sp. CdTB01 1774 1 species 1725411 0 1087 Streptomyces sp. SirexAA-E 862751 species 0 1 species 234612 0 1 1291 Streptomyces sp. TN58 1 species 444103 0 Streptomyces sp. CNQ-509 1346 species 1262452 0 1 1861 Streptomyces sp. 769 Streptomyces sp. CLI2509 1537 1 0 species 1984801 1 species 1964449 0 Streptomyces sp. 3211 2602 1 species 2059884 0 Streptomyces sp. CMB-StM0423 1687 1 0 species 1649184 Streptomyces sp. CFMR 7 1283 1738 Streptomyces sp. fd1-xmd species 1812480 0 1 1 0 1841249 species Streptomyces sp. RTd22 1559 1661694 species 0 1 1478 Streptomyces sp. Tue 6075 2906 Streptomyces bingchenggensis 379067 species 0 1 1521 Streptomyces reticuli 0 1926 species 1 Streptomyces vietnamensis 1870 1 species 362257 0 1636 Streptomyces niveus 0 species 193462 1 0 species 68192 1 1089 Streptomyces cyaneogriseus species 1940 0 1 1421 Streptomyces albireticuli 2927 2 species group 629295 0 1614 0 1482558 species subgroup 1 1614 Streptomyces globisporus 1908 species 0 1 1313 1482596 species subgroup 0 1 1 0 1911 species Streptomyces griseus 1313 1765 Streptomyces violaceusniger 0 species 68280 1 Streptomyces pluripotens 1322 1 1355015 species 0 1 67267 species 0 Streptomyces alboflavus 1737 1 1912 species 0 Streptomyces hygroscopicus 4590 Streptomyces leeuwenhoekii 1201 1 0 species 1437453 1 1914 species 0 Streptomyces lavendulae 2202 1 553510 species 0 Streptomyces gilvosporeus 2107 1398 Streptomyces sp. S10(2016) species 1783515 0 1 68214 species 0 1 1549 Streptomyces griseochromogenes 1 0 2049881 species Streptomyces sp. XZHG99 1409 1888 species 0 1 5574 Streptomyces albus 1156 Streptomyces parvulus species 146923 0 1 species 1901 0 1 1785 Streptomyces clavuligerus Streptomyces fulvissimus 1425 1 species 68202 0 1 0 species 285473 Streptomyces rubrolavendulae 1278 species 1950 0 1 995 Streptomyces peucetius 9834 1477431 species group 0 2 8331 Streptomyces coelicolor species 1902 0 1 1 0 42239 species Streptomyces sampsonii 1503 1 0 68249 species Streptomyces pactum 3513 1 0 1971 species Streptomyces noursei 2011 5473 Streptomyces autolyticus 0 75293 species 1 0 species 42684 1 1511 Streptomyces collinus 1 92644 species 0 Streptomyces malaysiensis 2013 1 0 1907 species Streptomyces glaucescens 1871 0 species 38300 1 1227 Streptomyces pristinaespiralis 2195 Streptomyces avermitilis 0 33903 species 1 0 1915 species 1 2486 Streptomyces lincolnensis Streptomyces puniciscabiei 1276 1 species 164348 0 Frankiales 9760 1 7 0 85013 order 129 0 74712 family 6 53 9631 Frankiaceae 1 1 Frankia 9578 32 5 genus 1854 0 Frankia inefficax 1353 1 species 298654 0 Frankia alni 4770 1 species 1859 0 1 0 no rank 2632575 1493 1 298653 species 0 Frankia sp. EAN1pec 1493 1930 Frankia casuarinae species 106370 0 1 4 0 order 414714 44 Catenulisporales 7226 1 36 0 family 414877 3 1 7182 Catenulisporaceae 414878 genus 0 2 16 7146 Catenulispora 1 Catenulispora acidiphila 7130 1 0 304895 species 29 12 2039638 order 0 1 Candidatus Nanopelagicales 5707 0 family 2162846 11 5678 7 622681 genus 0 34 Candidatus Planktophila 2876 1 517 Candidatus Planktophila versatilis 1884905 species 0 1 291 Candidatus Planktophila sulfonica 1884904 species 0 1 1 species 573600 0 Candidatus Planktophila limnetica 603 0 species 1884913 1 463 Candidatus Planktophila lacus 434 Candidatus Planktophila vernalis 0 1884907 species 1 1 0 1884914 species Candidatus Planktophila dulcis 534 genus 2039639 0 4 21 2802 Candidatus Nanopelagicus 1 0 species 1884916 1 1037 Candidatus Nanopelagicus abundans 923 Candidatus Nanopelagicus limnes species 1884634 0 1 821 Candidatus Nanopelagicus hibericus 0 species 1884915 1 1 Actinopolysporales 487 5 4 0 622450 order 482 Actinopolysporaceae 1 622451 family 0 3 1 481 Actinopolyspora 1 0 genus 1849 2 6 1 0 414996 species Actinopolyspora erythraea 475 537 2 no rank 1643818 0 6 2 147067 genus 0 1 Thermobispora 537 531 Thermobispora bispora 2006 species 0 1 order 622452 0 3 10 1249 Kineosporiales 1 2 family 83778 0 6 Kineosporiaceae 1239 1 1 0 33981 genus 1233 1 0 species 131568 Kineococcus radiotolerans 1233 4 class 84995 0 6 1 1002 Rubrobacteria 18 0 84996 order 5 1 998 Rubrobacterales 4 84997 family 0 4 Rubrobacteraceae 980 1 0 genus 42255 3 2 976 Rubrobacter 1 485 Rubrobacter xylanophilus 49319 species 0 1 0 42256 species 1 489 Rubrobacter radiotolerans 1 5 1497346 class 0 1 Thermoleophilia 7225 19 588673 order 0 4 1 7224 Solirubrobacterales 1 7205 Conexibacteraceae 8 family 320583 0 3 0 191494 genus 2 3 7197 Conexibacter 1 7194 Conexibacter woesei species 191495 0 1 1 Acidimicrobiia 1929 2 7 84992 class 0 1927 Acidimicrobiales 1 0 order 84993 6 25 1430 0 family 2448023 2 1 Ilumatobacter 1430 8 2 genus 682522 0 Ilumatobacter coccineus 1422 1 467094 species 0 Acidimicrobiaceae 472 1 3 0 84994 family 6 1 466 Acidimicrobium 21 0 genus 53634 2 445 Acidimicrobium ferrooxidans 0 53635 species 1 phylum 544448 0 102 5 80486 Tenericutes 1 1061 2799557 no rank 0 2 2 1912503 genus 0 6 Candidatus Izimaplasma 1061 1 no rank 2624196 0 1 1055 1055 Candidatus Izimaplasma sp. HR1 0 species 1541959 1 2 0 713063 no rank 2425 Tenericutes bacterium MO-XQ 1237 1 0 species 1911684 species 1911683 0 1 1188 Tenericutes bacterium MZ-XQ 202 97 class 31969 0 1 Mollicutes 76995 150 0 order 2085 44 1 37594 Mycoplasmatales 112 43 0 family 2092 1 Mycoplasmataceae 37444 Mycoplasma 25747 1 27 0 genus 2093 263 1 171632 species 0 Mycoplasma ovis 241 Mycoplasma gallisepticum 763 1 2096 species 0 1 45362 species 0 Mycoplasma bovoculi 976 Mycoplasma genitalium 433 1 species 2097 0 1 species 50052 0 Mycoplasma crocodyli 717 1 0 species 2098 Mycoplasma hominis 1255 Mycoplasma haemofelis 3285 1 species 29501 0 238 Mycoplasma pneumoniae species 2104 0 1 1062 Mycoplasma putrefaciens species 2123 0 1 1054 Mycoplasma haemocanis 136241 species 0 1 0 species 2128 1 430 Mycoplasma flocculare 1 2100 species 0 Mycoplasma hyorhinis 758 Mycoplasma mobile 1010 1 0 species 2118 species 65123 0 1 203 Mycoplasma wenyonii 57372 species 0 1 444 Mycoplasma suis 0 2683645 no rank 1 658 species 1749074 0 1 658 Mycoplasma sp. (ex Biomphalaria glabrata) 569 Mycoplasma dispar 86660 species 0 1 0 species 2099 1 2366 Mycoplasma hyopneumoniae 724 Mycoplasma parvum 0 species 984991 1 Mycoplasma arthritidis 432 1 2111 species 0 5038 3 0 species group 656088 Mycoplasma mycoides 2265 1 species 2102 0 Mycoplasma capricolum 1465 1 species 2095 0 Mycoplasma leachii 1308 1 0 species 2105 1 0 species 51365 Mycoplasma yeatsii 1000 1140 Mycoplasma penetrans species 28227 0 1 Mycoplasma canadense 688 1 0 species 29554 1 Ureaplasma 1735 17 3 genus 2129 0 1 species 2130 0 Ureaplasma urealyticum 792 1 134821 species 0 Ureaplasma parvum 926 9850 2767358 genus 0 12 2112 species 0 1 610 Mycoplasma bovigenitalium 812 Mycoplasma fermentans species 2115 0 1 732 Mycoplasma arginini 0 2094 species 1 species 29553 0 1 804 Mycoplasma bovirhinis Mycoplasma synoviae 624 1 species 2109 0 1 0 species 2110 Mycoplasma agalactiae 886 species 48003 0 1 652 Mycoplasma pullorum 0 species 2107 1 870 Mycoplasma pulmonis 924 Mycoplasma cynos 171284 species 0 1 Mycoplasma canis 832 1 0 29555 species 486 Mycoplasma californicum species 2113 0 1 1618 Mycoplasma bovis species 28903 0 1 Entomoplasmatales 32320 1 39 186328 order 0 41 Entomoplasmataceae 9795 1 14 family 33925 0 19 Entomoplasma 3076 1 5 0 genus 46238 21 0 species 214888 1 704 Entomoplasma luminosum Entomoplasma melaleucae 1071 1 81459 species 0 species 74700 0 1 367 Entomoplasma freundtii 1 0 species 215578 Entomoplasma somnilux 913 1 6700 Mesoplasma 110 0 genus 46239 8 species 2149 0 1 910 Mesoplasma entomophilum 0 225999 species 1 703 Mesoplasma syrphidae Mesoplasma chauliocola 985 1 0 species 216427 1 2151 species 0 Mesoplasma florum 1577 Mesoplasma coleopterae 808 1 species 324078 0 1 0 species 219745 Mesoplasma tabanidae 916 Mesoplasma lactucae 691 1 138853 species 0 1 Spiroplasmataceae 22484 30 24 0 2131 family 1 Spiroplasma 22454 203 23 genus 2132 0 0 species 2136 1 830 Spiroplasma monobiae 0 species 2145 1 1316 Spiroplasma taiwanense 1 0 species 216933 Spiroplasma chrysopicola 741 1 0 species 216944 Spiroplasma sabaudiense 695 1296 Spiroplasma diminutum species 216936 0 1 1209 Spiroplasma helicoides 0 216938 species 1 species 216935 0 1 1196 Spiroplasma culicicola Spiroplasma citri 822 1 2133 species 0 Spiroplasma syrphidicola 772 1 0 species 216945 657 Spiroplasma mirum 2144 species 0 1 0 216937 species 1 1477 Spiroplasma floricola 1 47834 species 0 Spiroplasma kunkelii 985 Spiroplasma atrichopogonis 669 1 1114980 species 0 2 0 no rank 2637901 1614 1 1898044 species 0 Spiroplasma sp. TU-14 806 Spiroplasma sp. NBRC 100390 808 1 0 species 1914410 Spiroplasma clarkii 1013 1 0 species 2139 Spiroplasma litorale 1429 1 species 216942 0 1 216946 species 0 Spiroplasma turonicum 1344 1 0 216934 species Spiroplasma corruscae 1175 species 315358 0 1 801 Spiroplasma eriocheiris 1 2137 species 0 Spiroplasma apis 741 362837 species 0 1 1469 Spiroplasma cantharicola 9 order 186329 0 13 1 6879 Acholeplasmatales 2146 family 0 12 29 6870 Acholeplasmataceae 1 3643 Acholeplasma 1 0 2147 genus 5 8 Acholeplasma oculi 962 1 0 species 35623 Acholeplasma palmae 1146 1 species 38986 0 827 Acholeplasma laidlawii 0 species 2148 1 1 61635 species 0 Acholeplasma brassicae 700 Candidatus Phytoplasma 3198 1 6 genus 33926 0 33 0 species group 85630 1 683 683 Candidatus Phytoplasma mali 0 37692 species 1 0 species group 85632 1 610 Candidatus Phytoplasma australiense 610 1 0 species 59748 0 85620 species group 3 1872 1 species 100379 0 Onion yellows phytoplasma 622 Maize bushy stunt phytoplasma 637 1 species 202462 0 Aster yellows witches'-broom phytoplasma 613 1 229545 species 0 12545 36 1297 phylum 0 1 12545 Deinococci 28 188787 class 0 36 93 15 order 118964 0 1 Deinococcales 6264 1 Deinococcaceae 6171 16 14 183710 family 0 79 0 genus 1298 13 1 6155 Deinococcus 0 1768108 species 1 451 Deinococcus actinosclerus 1 no rank 2623546 0 455 Deinococcus sp. NW-56 455 1 0 2080419 species 1 502394 species 0 Deinococcus gobiensis 584 1 species 310783 0 Deinococcus deserti 303 1 1299 species 0 Deinococcus radiodurans 457 1182568 species 0 1 513 Deinococcus puniceus 1 0 species 1309411 Deinococcus soli Cha et al. 2016 521 Deinococcus maricopensis 544 1 0 species 309887 55148 species 0 1 910 Deinococcus proteolyticus 1 68909 species 0 Deinococcus geothermalis 392 424 Deinococcus peraridilitoris 0 432329 species 1 522 Deinococcus swuensis species 1182571 0 1 0 order 2762275 3 539 3 3 0 332247 family 1 Trueperaceae 539 genus 332248 0 2 8 536 Truepera 1 1 0 332249 species Truepera radiovictrix 528 Thermales 5714 1 17 0 order 68933 27 Thermaceae 5687 1 16 family 188786 0 18 2 genus 186191 0 5 Marinithermus 292 1 1 186192 species 0 Marinithermus hydrothermalis 287 1 Oceanithermus 657 5 2 208447 genus 0 187137 species 0 1 652 Oceanithermus profundus 1 876 Meiothermus 4 0 genus 65551 3 Meiothermus ruber 490 1 species 277 0 0 species 52022 1 382 Meiothermus silvanus Thermus 3844 1 8 genus 270 0 27 411 1 no rank 2619321 0 0 1111069 species 1 411 Thermus sp. CCB_US3_UF1 0 456163 species 1 399 Thermus parvatiensis Thermus aquaticus 491 1 species 271 0 0 56957 species 1 580 Thermus oshimai 1 species 37636 0 Thermus scotoductus 329 0 species 274 1 1286 Thermus thermophilus 0 56956 species 1 321 Thermus brockianus 1 Firmicutes 663733 138 702 1239 phylum 0 9630 Negativicutes 1 0 909932 class 28 27 14 order 909929 0 26 Selenomonadales 6001 1 0 family 1843490 4 4 3189 Sporomusaceae 1 Pelosinus 3185 1 3 0 365348 genus 1 0 2629460 no rank 1 1708 1708 Pelosinus sp. UFO1 0 species 484770 1 1 0 365349 species Pelosinus fermentans 1476 1 Selenomonadaceae 2786 13 9 0 family 1843491 1195 Megamonas 1 0 genus 158846 2 7 1 158847 species 0 Megamonas hypermegale 1188 6 970 genus 0 62 Selenomonas 1578 1 3 0 2637378 no rank 814 0 species 713030 1 333 Selenomonas sp. oral taxon 136 1 0 species 712538 Selenomonas sp. oral taxon 478 279 Selenomonas sp. oral taxon 920 202 1 1884263 species 0 1 species 971 0 Selenomonas ruminantium 368 0 species 69823 1 334 Selenomonas sputigena 1 Acidaminococcales 756 2 5 0 1843488 order 1 Acidaminococcaceae 754 6 4 0 family 909930 2 genus 904 0 3 1 748 Acidaminococcus Acidaminococcus intestini 218 1 0 species 187327 species 905 0 1 528 Acidaminococcus fermentans 1 Veillonellales 2846 15 8 order 1843489 0 1 2831 Veillonellaceae 16 0 family 31977 7 39948 genus 0 1 675 675 Dialister pneumosintes species 39950 0 1 206 genus 909928 0 1 Negativicoccus massiliensis 206 1 1702287 species 0 genus 906 0 1 702 Megasphaera elsdenii 702 1 907 species 0 3 genus 29465 0 11 Veillonella 1232 1 895 Veillonella parvula species 29466 0 1 326 Veillonella rodentium 0 species 248315 1 1 Erysipelotrichia 3056 3 10 class 526524 0 9 order 526525 0 15 Erysipelotrichales 3053 1 Erysipelotrichaceae 3038 1 8 0 128827 family 9 genus 1729679 0 1 295 1 species 1702221 0 Faecalibaculum rodentium 295 0 544447 no rank 1 489 Erysipelotrichaceae bacterium I46 489 1 0 species 1834207 11 0 genus 1647 3 1 1386 Erysipelothrix 0 1648 species 1 710 Erysipelothrix rhusiopathiae 665 Erysipelothrix larvae species 1514105 0 1 1 859 Turicibacter 2 0 genus 191303 2 857 1 0 2638206 no rank Turicibacter sp. H121 857 1 0 1712675 species 0 class 91061 430 305 406117 Bacilli 1 Bacillales 286983 1 266 1385 order 0 685 186821 family 0 1 496 496 663587 no rank 0 1 1 85683 species 0 [Bacillus] selenitireducens 496 46 family 186822 0 78 Paenibacillaceae 51961 1 Paenibacillus 46368 1 36 0 44249 genus 152 1 0 2044880 species group 806 Paenibacillus riograndensis 806 1 0 species 483937 160799 species 0 1 933 Paenibacillus borealis Paenibacillus peoriae 1174 1 species 59893 0 Paenibacillus durus 1584 1 0 species 44251 1464 species 0 1 1216 Paenibacillus larvae 0 species 1406 1 7865 Paenibacillus polymyxa 1 0 414771 species Paenibacillus donghaensis 4097 Paenibacillus kribbensis 522 1 species 172713 0 580 Paenibacillus terrae 0 species 159743 1 0 169760 species 1 417 Paenibacillus stellifer Paenibacillus swuensis 556 1 1178515 species 0 1 0 1870820 species Paenibacillus ihbetae 693 16640 13 no rank 185978 0 0 species 1536772 1 748 Paenibacillus sp. FSL R7-0273 1 species 1566358 0 Paenibacillus sp. IHBB 10380 3797 519 Paenibacillus sp. 32O-W 0 species 1695218 1 394 Paenibacillus sp. Y412MC10 species 481743 0 1 1 0 1536771 species Paenibacillus sp. FSL R5-0912 821 Paenibacillus sp. JDR-2 518 1 species 324057 0 569 Paenibacillus sp. lzh-N1 0 2069255 species 1 Paenibacillus sp. FSL H7-0737 955 1 species 1536775 0 Paenibacillus sp. FSL H7-0357 1063 1 0 species 1536774 674 Paenibacillus sp. FSL R7-0331 0 species 1536773 1 Paenibacillus sp. BIHB4019 1360 1 1870819 species 0 2902 Paenibacillus sp. FSL R5-0345 1536770 species 0 1 1 1536769 species 0 Paenibacillus sp. FSL P4-0081 2320 1 species 365617 0 Paenibacillus sabinae 332 Paenibacillus bovis 1555 1 0 species 1616788 1240 Paenibacillus odorifer species 189426 0 1 1 0 61624 species Paenibacillus mucilaginosus 1624 1 0 1763538 species Paenibacillus crassostreae 866 1 species 1126833 0 Paenibacillus beijingensis 570 Paenibacillus naphthalenovorans 386 1 species 162209 0 1462996 species 0 1 429 Paenibacillus yonginensis Paenibacillus xylanexedens 614 1 species 528191 0 1 0 189425 species Paenibacillus graminis 1517 0 no rank 85151 3 919 3 55079 genus 0 1 Aneurinibacillus 919 1 0 no rank 2642329 1 434 1450761 species 0 1 434 Aneurinibacillus sp. XH2 1 0 species 1500254 Aneurinibacillus soli 484 Brevibacillus 4092 1 4 0 genus 55080 15 0 species 54913 1 802 Brevibacillus formosus 1393 species 0 1 1248 Brevibacillus brevis 1 1465 species 0 Brevibacillus laterosporus 2027 1 504 Thermobacillus 1 76632 genus 0 2 Thermobacillus composti 503 1 0 species 377615 9 539002 no rank 0 3438 0 no rank 539738 2 1005 Gemella 1005 1 2 1378 genus 0 6 0 no rank 2624949 1 999 0 1785995 species 1 999 Gemella sp. oral taxon 928 7 0 no rank 539742 2433 19 genus 33986 0 7 1 2433 Exiguobacterium 1 132920 species 0 Exiguobacterium antarcticum 277 no rank 2644629 0 4 1798 1 species 1849031 0 Exiguobacterium sp. U13-1 560 0 species 360911 1 296 Exiguobacterium sp. AT1b 1399115 species 0 1 282 Exiguobacterium sp. MH3 Exiguobacterium sp. ZWU0009 660 1 species 1224749 0 0 332410 species 1 339 Exiguobacterium sibiricum 267 Thermoactinomycetaceae 1 186824 family 0 3 2 genus 292635 0 1 1 Laceyella 0 1677050 genus 1 264 0 species 1471761 1 264 Novibacillus thermophilus 0 family 186818 26 54 18239 Planococcaceae 1 1 0 genus 648802 868 0 species 241244 1 868 Rummeliibacillus stabekisii Planococcus 7925 1 12 0 1372 genus 100 1 192421 species 0 Planococcus maritimus 783 1 0 species 161360 Planococcus antarcticus 537 Planococcus donghaensis 859 1 species 414778 0 Planococcus halocryophilus 974 1 1215089 species 0 1598147 species 0 1 921 Planococcus faecalis Planococcus sp. L10.15 925 1 species 1302659 0 200991 species 0 1 536 Planococcus rifietoensis 2662419 no rank 0 2 1326 1 species 1526927 0 Planococcus sp. PAMC 21323 733 0 species 2058136 1 593 Planococcus sp. MB-3u-03 Planococcus kocurii 752 1 0 1374 species 1 0 1038856 species Planococcus plakortidis 212 5098 Sporosarcina 1 genus 1569 0 5 55 Sporosarcina psychrophila 1912 1 1476 species 0 Sporosarcina ureae 2386 1 0 1571 species 2 0 2647733 no rank 745 Sporosarcina sp. P33 365 1 0 1930764 species 0 1930546 species 1 380 Sporosarcina sp. P37 3 0 genus 648800 29 Solibacillus 2450 1 1256 Solibacillus silvestris 0 species 76853 1 0 2637870 no rank 1 1165 1165 Solibacillus sp. R5-41 0 2048654 species 1 1 Kurthia 887 7 2 0 genus 1649 880 no rank 2644826 0 1 1 1750719 species 0 Kurthia sp. 11kri321 880 2 0 genus 157226 4 Jeotgalibacillus 957 1 species 1508404 0 1 953 Jeotgalibacillus malaysiensis 0 family 186823 9 8 2278 Alicyclobacillaceae 1 Tumebacillus 1062 1 3 0 genus 432330 19 750 Tumebacillus avium 1903704 species 0 1 0 1214604 species 1 293 Tumebacillus algifaecis Alicyclobacillus 493 1 2 0 genus 29330 3 490 Alicyclobacillus acidocaldarius 0 species 405212 1 3 3 0 genus 1129704 1 Kyrpidia 715 1 0 species 33943 Kyrpidia tusciae 340 372 Kyrpidia sp. EA-1 0 species 2055160 1 1 152441 Bacillaceae 177 0 186817 family 120 2 0 genus 175304 2 Lentibacillus 621 1 1 species 1472767 0 Lentibacillus amyloliquefaciens 619 2675234 genus 0 5 5427 1 0 species 79880 Bacillus clausii 1054 1095 Bacillus lehensis species 300825 0 1 1 0 199441 species Bacillus krulwichiae 1562 79885 species 0 1 1204 Bacillus pseudofirmus Bacillus halodurans 512 1 species 86665 0 15 129337 genus 0 213 Geobacillus 7634 1 260 Geobacillus genomosp. 3 1921421 species 0 1 715 Geobacillus thermodenitrificans 33940 species 0 1 0 1505648 species group 4 2255 0 species 33938 1 314 Geobacillus thermocatenulatus 263 Geobacillus lituanicus species 169283 0 1 1462 species 0 1 499 Geobacillus kaustophilus 1 0 33941 species Geobacillus thermoleovorans 1179 729 Geobacillus stearothermophilus 1422 species 0 1 3173 6 2642459 no rank 0 1 544556 species 0 Geobacillus sp. Y412MC61 188 species 550542 0 1 189 Geobacillus sp. Y412MC52 0 species 581103 1 720 Geobacillus sp. Y4.1MC1 0 species 1233873 1 199 Geobacillus sp. GHH01 0 691437 species 1 788 Geobacillus sp. C56-T3 1089 Geobacillus sp. WCH70 0 471223 species 1 Geobacillus subterraneus 289 1 species 129338 0 1 2535 Oceanobacillus 1 genus 182709 0 2 2534 Oceanobacillus iheyensis 0 182710 species 1 3 0 genus 45667 3 Halobacillus 1327 1 1 species 1570 0 Halobacillus halophilus 675 649 Halobacillus mangrovi species 402384 0 1 351195 genus 0 2 1 383 Salimicrobium 1 1 0 species 1230341 Salimicrobium jeotgali 382 1 Virgibacillus 7444 7 7 84406 genus 0 2397 2 2620237 no rank 0 Virgibacillus sp. SK37 1021 1 403957 species 0 0 1911587 species 1 1376 Virgibacillus sp. 6R Virgibacillus pantothenticus 1486 1 1473 species 0 1 0 2017483 species Virgibacillus phasianinus 1083 Virgibacillus halodenitrificans 1194 1 species 1482 0 1277 Virgibacillus necropolis 163877 species 0 1 47 genus 400634 0 5 1 7258 Lysinibacillus 28031 species 0 1 1154 Lysinibacillus fusiformis 1365 1 2636778 no rank 0 1365 Lysinibacillus sp. YS11 species 2072025 0 1 3459 Lysinibacillus sphaericus species 1421 0 1 Lysinibacillus varians 1233 1 1145276 species 0 3 0 1329200 genus 3 Fictibacillus 1613 1 860 Fictibacillus arsenicus 0 species 255247 1 species 1221500 0 1 750 Fictibacillus phosphorivorans 2459 2 0 genus 2675230 1 species 859143 0 Bacillus kochii 1363 1096 Bacillus oceanisediminis species 665099 0 1 943 Aeribacillus 1 genus 1055323 0 2 1 0 33936 species 1 942 Aeribacillus pallidus 906 Amphibacillus 1 genus 29331 0 2 1 1 0 1449 species Amphibacillus xylanus 905 558 Terribacillus 1 0 genus 459532 2 1 557 Terribacillus aidingensis 586416 species 0 1 0 genus 1906945 1 831 0 1426 species 1 831 Parageobacillus thermoglucosidasius 3222 0 2675229 genus 2 Bacillus muralis 642 1 species 264697 0 Bacillus simplex 2580 1 0 1478 species 58 0 genus 1386 1454 Bacillus 103530 1 Bacillus glycinifermentans 1178 1 species 1664069 0 species 86664 0 1 1804 Bacillus flexus Bacillus xiamenensis 673 1 1178537 species 0 Bacillus endophyticus 1649 1 0 species 135735 1413 species 0 1 1549 Bacillus cellulosilyticus 11545 0 653685 species group 9 Bacillus atrophaeus 1380 1 0 species 1452 1 119858 species 0 Bacillus sonorensis 487 Bacillus paralicheniformis 610 1 species 1648923 0 759 Bacillus licheniformis 1402 species 0 1 species 72361 0 1 71 Bacillus vallismortis 1 0 species 1423 Bacillus subtilis 4909 3329 0 species subgroup 1938374 3 1 0 1390 species Bacillus amyloliquefaciens 1645 1 0 492670 species Bacillus velezensis 1445 239 Bacillus siamensis 0 species 659243 1 414 Bacillus beveridgei 0 632773 species 1 33932 species 0 1 2144 Bacillus cohnii 1 1408 species 0 Bacillus pumilus 3027 6448 Bacillus megaterium 0 1404 species 1 Bacillus smithii 698 1 1479 species 0 86661 species group 0 10 54226 3011 3 no rank 2750818 0 860 Bacillus sp. HBCD-sjtu 0 2053832 species 1 866 Bacillus sp. ABP14 0 1892404 species 1 1285 Bacillus sp. FDAARGOS_235 species 1839798 0 1 Bacillus bombysepticus 1215 1 658666 species 0 0 species 580165 1 1161 Bacillus cytotoxicus 18803 Bacillus cereus 1396 species 0 1 Bacillus toyonensis 1054 1 0 species 155322 1 0 species 1428 Bacillus thuringiensis 20350 Bacillus anthracis 3002 1 0 1392 species 1 0 1405 species Bacillus mycoides 5630 0 species 1547283 1 1441 Bacillus weihaiensis 814 1 0 species group 1792192 Bacillus altitudinis 814 1 species 293387 0 412384 species 0 1 1190 Bacillus aryabhattai 1 1471 species 0 Bacillus methanolicus 1509 Bacillus coagulans 991 1 species 1398 0 1 0 species 79881 Bacillus gibsonii 229 Bacillus horikoshii 713 1 0 79883 species Bacillus infantis 472 1 0 324767 species 7741 19 no rank 185979 0 Bacillus sp. Pc3 175 1 0 1446792 species species 1409 0 1 145 Bacillus sp. (in: Bacteria) 0 1570330 species 1 106 Bacillus sp. BH072 1 1827146 species 0 Bacillus sp. IHB B 7164 1169 0 species 666686 1 1274 Bacillus sp. 1NLA3E 1 species 756828 0 Bacillus sp. WP8 843 157 Bacillus sp. 275 1941347 species 0 1 1 species 563169 0 Bacillus sp. SJ-10 189 357 Bacillus sp. 1s-1 species 2026248 0 1 1 0 1628753 species Bacillus sp. LM 4-2 171 0 species 98228 1 385 Bacillus sp. OxB-1 species 1574141 0 1 210 Bacillus sp. YP1 257 Bacillus sp. SDLI1 0 1774743 species 1 1 1837130 species 0 Bacillus sp. FJAT-14266 456 0 species 2049935 1 106 Bacillus sp. Lzh-5 1 species 2009331 0 Bacillus sp. MD-5 228 934 Bacillus sp. X1(2014) 1565991 species 0 1 0 1127744 species 1 219 Bacillus sp. JS 1856406 species 0 1 360 Bacillus sp. H15-1 1621 Bacillus safensis 0 561879 species 1 5573 Anoxybacillus 1 0 150247 genus 6 39 2 no rank 2639704 0 2151 1 0 1490052 species Anoxybacillus sp. B2M1 1088 species 1490057 0 1 1063 Anoxybacillus sp. B7M1 species 294699 0 1 1117 Anoxybacillus amylolyticus 0 33934 species 1 1284 Anoxybacillus flavithermus Anoxybacillus gonensis 982 1 species 198467 0 55 42 0 family 90964 1 Staphylococcaceae 48739 1 Salinicoccus 353 2 2 genus 45669 0 1 0 species 407035 Salinicoccus halodurans 351 4 2 2005363 genus 0 1 Auricoccucs 790 Auricoccus indicus 786 1 0 species 1849491 0 genus 69965 4 10 2368 Macrococcus 1 species 69966 0 1 728 Macrococcus caseolyticus Macrococcus canis 677 1 0 species 1855823 953 0 2619255 no rank 1 Macrococcus sp. IME1552 953 1 0 1898474 species 305 33 0 1279 genus 1 Staphylococcus 45173 0 45972 species 1 3118 Staphylococcus pasteuri 1 0 985762 species Staphylococcus agnetis 866 0 29388 species 1 1255 Staphylococcus capitis 1609 Staphylococcus sciuri 0 1296 species 1 0 species 246432 1 2105 Staphylococcus equorum Staphylococcus lugdunensis 1291 1 species 28035 0 species 155085 0 1 765 Staphylococcus lutrae Staphylococcus aureus 4751 1 0 1280 species 1 0 29382 species Staphylococcus cohnii 1329 0 61015 species 1 1203 Staphylococcus succinus Staphylococcus pseudintermedius 943 1 283734 species 0 1133 Staphylococcus kloosii 0 29384 species 1 1 0 species 70258 Staphylococcus piscifermentans 755 1282 species 0 1 2891 Staphylococcus epidermidis Staphylococcus haemolyticus 1435 1 species 1283 0 29385 species 0 1 1273 Staphylococcus saprophyticus 1 0 1295 species Staphylococcus schleiferi 1078 species 170573 0 1 551 Staphylococcus pettenkoferi 1 species 1286 0 Staphylococcus simulans 955 Staphylococcus argenteus 1465 1 985002 species 0 1439 Staphylococcus simiae 0 308354 species 1 1 no rank 91994 0 1133 1133 Staphylococcus sp. AntiMn-1 1715860 species 0 1 Staphylococcus carnosus 1010 1 species 1281 0 Staphylococcus hyicus 720 1 species 1284 0 0 species 214473 1 1332 Staphylococcus nepalensis 1 0 643214 species Staphylococcus stepanovicii 1445 0 species 46127 1 805 Staphylococcus felis 2157 Staphylococcus xylosus 0 species 1288 1 0 1294 species 1 505 Staphylococcus muscae Staphylococcus hominis 1344 1 0 1290 species 1 1292 species 0 Staphylococcus warneri 1126 1081 Staphylococcus condimenti 0 70255 species 1 8439 Listeriaceae 1 186820 family 0 9 14 Listeria 7368 1 6 0 1637 genus 79 Listeria innocua 855 1 1642 species 0 Listeria ivanovii 1593 1 0 1638 species 799 Listeria seeligeri 0 1640 species 1 Listeria welshimeri 945 1 0 1643 species 1 0 1639 species Listeria monocytogenes 3097 6 2 genus 2755 0 1 Brochothrix 1057 Brochothrix thermosphacta 1051 1 0 2756 species 1 118829 Lactobacillales 277 0 order 186826 163 0 family 81850 17 12 8495 Leuconostocaceae 1 0 genus 46254 1 564 1 0 species 1247 Oenococcus oeni 564 1 2694 Weissella 14 genus 46255 0 6 572 Weissella paramesenteroides species 1249 0 1 species 137591 0 1 426 Weissella cibaria Weissella ceti 265 1 0 species 759620 1 0 165096 species Weissella koreensis 679 1 0 species 1631871 Weissella jogaejeotgali 738 0 genus 1243 9 20 5225 Leuconostoc 1 1246 species 0 1 230 Leuconostoc lactis 0 2685106 no rank 1 506 1 979982 species 0 Leuconostoc sp. C2 506 species 1244 0 1 1232 Leuconostoc gelidum 198 Leuconostoc garlicum 255248 species 0 1 Leuconostoc citreum 410 1 species 33964 0 1 species 136609 0 Leuconostoc kimchii 546 0 1252 species 1 771 Leuconostoc carnosum species 1245 0 1 1312 Leuconostoc mesenteroides family 81852 0 19 28 14205 Enterococcaceae 1 1789 Vagococcus 1 genus 2737 0 3 10 946 Vagococcus teuberi 519472 species 0 1 Vagococcus penaei 833 1 0 species 633807 0 51668 genus 2 2 1219 Tetragenococcus 1 Tetragenococcus halophilus 1217 1 0 51669 species 1 Enterococcus 9907 60 12 genus 1350 0 Enterococcus wangshanyuanii 883 1 0 species 2005703 3 0 no rank 2608891 1409 2057791 species 0 1 461 Enterococcus sp. CR-Ec1 1 0 2060307 species Enterococcus sp. FDAARGOS_375 484 1 species 2060306 0 Enterococcus sp. FDAARGOS_163 464 species 417368 0 1 939 Enterococcus thailandicus 1063 Enterococcus hirae species 1354 0 1 1 53345 species 0 Enterococcus durans 777 1 0 53346 species Enterococcus mundtii 1006 Enterococcus faecium 1718 1 0 species 1352 1 0 37734 species Enterococcus casseliflavus 465 Enterococcus faecalis 1587 1 1351 species 0 genus 33969 0 1 1262 0 species 33970 1 1262 Melissococcus plutonius 0 no rank 263855 1 846 1 species 1993866 0 Lactobacillales bacterium 846 8 8 186827 family 0 1 Aerococcaceae 2646 Aerococcus 2638 1 7 1375 genus 0 16 species 1377 0 1 410 Aerococcus viridans 1 0 119206 species Aerococcus sanguinicola 232 Aerococcus urinaehominis 335 1 0 species 128944 Aerococcus christensenii 470 1 0 87541 species 1 species 51665 0 Aerococcus urinaeequi 599 576 Aerococcus urinae 1376 species 0 1 19 10 0 186828 family 1 Carnobacteriaceae 8690 genus 2747 0 5 29 5547 Carnobacterium 1 1650 2 0 257487 no rank 957 Carnobacterium sp. 17-4 species 208596 0 1 1564681 species 0 1 693 Carnobacterium sp. CP1 Carnobacterium maltaromaticum 2963 1 2751 species 0 Carnobacterium inhibens 905 1 0 species 147709 1241 2 0 genus 1470540 667 1 2621505 no rank 0 1 0 1903686 species Jeotgalibaca sp. PTS2502 667 1 species 708126 0 Jeotgalibaca dankookensis 574 1 genus 191769 0 2 1 1883 Marinilactibacillus 1882 0 2632303 no rank 1 1 1911586 species 0 Marinilactibacillus sp. 15R 1882 43046 Lactobacillaceae 1 33958 family 0 58 71 1 genus 2767892 0 717 Lactobacillus paracollinoides 717 1 species 240427 0 2 2767881 genus 0 1617 709 Lactobacillus sanfranciscensis 1625 species 0 1 1 0 species 53444 Lactobacillus lindneri 908 1 2767890 genus 0 688 Lactobacillus hokkaidonensis 688 1 1193095 species 0 4658 0 2767879 genus 6 Lactobacillus crustorum 868 1 species 392416 0 696 Lactobacillus farciminis 1612 species 0 1 Lactobacillus alimentarius 815 1 0 species 1602 1 0 species 1847728 Lactobacillus allii 811 0 1074467 species 1 662 Lactobacillus heilongjiangensis 806 Lactobacillus ginsenosidimutans 1007676 species 0 1 6 1253 genus 0 21 Pediococcus 3344 1 Pediococcus pentosaceus 1051 1 1255 species 0 Pediococcus claussenii 621 1 187452 species 0 Pediococcus inopinatus 516 1 0 species 114090 460 1 1670797 species group 0 Pediococcus acidilactici 460 1 0 species 1254 1 0 51663 species Pediococcus damnosus 675 1190 2 genus 2767889 0 664 Lactobacillus backii 0 375175 species 1 0 species 1610 1 526 Lactobacillus coryniformis 1256 0 2767893 genus 3 541 Lactobacillus curieae 1138822 species 0 1 1 0 species 152331 Lactobacillus parabuchneri 326 389 Lactobacillus buchneri 0 1581 species 1 0 2767876 genus 1 282 0 1603 species 1 282 Lactobacillus amylophilus 1478 2 0 2767885 genus 1 0 28038 species Lactobacillus curvatus 535 1 1599 species 0 Lactobacillus sakei 943 3 0 2767886 genus 1069 Lactobacillus zymae 202 1 species 267363 0 Lactobacillus brevis 608 1 0 species 1580 1 0 species 637971 Lactobacillus koreensis 259 1 13470 Lactobacillus 280 0 1578 genus 16 0 species 267818 1 654 Lactobacillus kefiranofaciens 1904 Lactobacillus delbrueckii 0 1584 species 1 1597 Lactobacillus johnsonii species 33959 0 1 449 Lactobacillus amylolyticus species 83683 0 1 Lactobacillus acidophilus 715 1 0 1579 species Lactobacillus gallinarum 570 1 species 52242 0 1482 Lactobacillus helveticus 1587 species 0 1 2406 0 2620435 no rank 4 317 Lactobacillus sp. D1501 0 species 2108362 1 species 2099788 0 1 957 Lactobacillus sp. CBA3605 1 0 species 2099789 Lactobacillus sp. CBA3606 352 1 species 1545702 0 Lactobacillus sp. wkB8 780 species 1604 0 1 747 Lactobacillus amylovorus 726 Lactobacillus jensenii 109790 species 0 1 Lactobacillus gasseri 1395 1 0 species 1596 545 Lactobacillus acetotolerans 0 1600 species 1 2610 3 0 2759736 genus Lactobacillus paracasei 728 1 species 1597 0 Lactobacillus rhamnosus 948 1 0 47715 species 0 1582 species 1 934 Lactobacillus casei 4093 3 genus 2767842 0 0 1590 species 1 3361 Lactobacillus plantarum Lactobacillus paraplantarum 360 1 0 60520 species species 1589 0 1 372 Lactobacillus pentosus 3 2742598 genus 0 2567 1545 Lactobacillus reuteri 0 1598 species 1 1 0 species 1613 Lactobacillus fermentum 528 494 Lactobacillus mucosae species 97478 0 1 0 2767887 genus 4 3484 species 1623 0 1 322 Lactobacillus ruminis 1 0 1624 species Lactobacillus salivarius 2431 288 Lactobacillus agilis 0 species 1601 1 1 0 89059 species Lactobacillus acidipiscis 443 452 1 0 2767877 genus 0 148814 species 1 452 Lactobacillus kunkeei 43 49 0 family 1300 1 Streptococcaceae 40624 8 genus 1357 0 5 1 10185 Lactococcus Lactococcus piscium 1206 1 0 1364 species 1 0 species 1366 Lactococcus raffinolactis 407 7541 Lactococcus lactis 1358 species 0 1 Lactococcus garvieae 1023 1 0 1363 species 43 genus 1301 0 318 Streptococcus 30396 1 Streptococcus parauberis 822 1 0 species 1348 1721 Streptococcus pyogenes 0 species 1314 1 species 102684 0 1 702 Streptococcus infantarius 276 Streptococcus himalayensis 1888195 species 0 1 Streptococcus cristatus 396 1 45634 species 0 1 species 315405 0 Streptococcus gallolyticus 1146 Streptococcus pseudopneumoniae 364 1 257758 species 0 Streptococcus mutans 997 1 0 species 1309 680 Streptococcus uberis species 1349 0 1 430 Streptococcus parasanguinis 1318 species 0 1 0 species 1311 1 1547 Streptococcus agalactiae species 1326 0 1 309 Streptococcus acidominimus 373 Streptococcus pantholopis 0 species 1811193 1 Streptococcus pneumoniae 1596 1 0 1313 species 2 0 119603 species group 1465 1 1334 species 0 Streptococcus dysgalactiae 589 Streptococcus equi 876 1 0 1336 species 314 Streptococcus marmotae 0 1825069 species 1 59310 species 0 1 558 Streptococcus macedonicus 2794 no rank 2608887 0 7 1 species 1902136 0 Streptococcus sp. NPS 308 263 0 1156431 species 1 303 Streptococcus sp. I-G2 357 Streptococcus sp. A12 1759399 species 0 1 species 1839799 0 1 418 Streptococcus sp. FDAARGOS_192 317 Streptococcus sp. I-P16 0 species 1156433 1 1 0 1319 species Streptococcus sp. 'group B' 753 Streptococcus sp. oral taxon 431 383 1 712633 species 0 1 1303 species 0 Streptococcus oralis 890 373 Streptococcus merionis 400065 species 0 1 3 0 species group 671232 2533 1 0 species 1328 Streptococcus anginosus 1095 963 Streptococcus intermedius 0 1338 species 1 475 Streptococcus constellatus 0 species 76860 1 509 Streptococcus lutetiensis 150055 species 0 1 species 28037 0 1 1006 Streptococcus mitis 766 Streptococcus iniae 1346 species 0 1 472 Streptococcus pasteurianus 0 species 197614 1 Streptococcus salivarius 1311 1 0 1304 species 1969 Streptococcus suis 1307 species 0 1 Streptococcus thermophilus 936 1 species 1308 0 82348 species 0 1 412 Streptococcus pluranimalium 1 0 1305 species Streptococcus sanguinis 395 1335 species 0 1 400 Streptococcus equinus Streptococcus halotolerans 341 1 0 1814128 species 1275 Streptococcus gordonii 1302 species 0 1 552 4 0 class 1676648 8 0 order 1676649 4 1 552 Limnochordales 1 544 Limnochordaceae 3 0 family 1676650 3 541 Limnochorda 1 1676651 genus 0 2 19 0 species 1555112 1 522 Limnochorda pilosa 186 2 33974 no rank 0 3 2 0 genus 1930845 1 Ndongobacter 186 species 1871025 0 1 183 Ndongobacter massiliensis 0 1737404 class 16 11 8592 Tissierellia 1 1737405 order 0 13 30 7872 Tissierellales 1 5915 Peptoniphilaceae 1 0 family 1570339 9 20 1 Parvimonas 1683 2 2 0 543311 genus 0 33033 species 1 1681 Parvimonas micra 1186 0 150022 genus 1 1 species 1260 0 Finegoldia magna 1186 0 genus 165779 3 7 1691 Anaerococcus 1 Anaerococcus prevotii 845 1 33034 species 0 0 1870984 species 1 839 Anaerococcus mediterraneensis 885 genus 162289 0 1 0 no rank 2637196 1 885 1 0 species 1912856 Peptoniphilus sp. ING2-D1G 885 1161127 genus 0 1 450 Murdochiella vaginalis 450 1 species 1852373 0 4 family 2042895 0 3 1 1927 Gottschalkiaceae 1923 Gottschalkia 1 0 genus 1505664 2 2 1 0 1556 species Gottschalkia acidurici 1921 709 0 1737407 no rank 2 709 Ezakiella 1 0 genus 1582879 2 9 species 1852374 0 1 700 Ezakiella massiliensis 1787 0 no rank 84086 1 endosymbiont 'TC1' of Trimyema compressum 1787 1 species 243899 0 1 233675 Clostridia 243 186801 class 0 210 198329 Clostridiales 1 0 order 186802 156 455 1 Ruminococcaceae 3045 32 12 0 family 541000 378 0 no rank 552397 1 [Clostridium] cellulosi 378 1 0 29343 species 0 253238 genus 2 1 388 Ethanoligenens 1 Ethanoligenens harbinense 387 1 species 253239 0 1 Faecalibacterium 469 1 2 0 genus 216851 853 species 0 1 468 Faecalibacterium prausnitzii 1263 genus 0 3 1 1051 Ruminococcus 1 Ruminococcus albus 530 1 0 1264 species 1160721 species 0 1 520 Ruminococcus bicirculans Flavonifractor 495 1 2 genus 946234 0 4 0 292800 species 1 491 Flavonifractor plautii 1 0 no rank 2305133 232 232 Ruminococcaceae bacterium CPB6 species 1572656 0 1 6 5 0 family 186806 1 Eubacteriaceae 2237 1 1372 Eubacterium 10 genus 1730 0 2 1 0 1736 species Eubacterium limosum 1362 2 2 genus 33951 0 1 Acetobacterium 859 Acetobacterium woodii 857 1 0 species 33952 33 26 0 186803 family 1 Lachnospiraceae 20662 2489 genus 830 0 2 1 species 185008 0 Butyrivibrio hungatei 1167 1322 Butyrivibrio proteoclasticus 0 43305 species 1 1 genus 1663717 0 2 1 859 Herbinix Herbinix luporum 858 1 1679721 species 0 2 572511 genus 0 3 1 1194 Blautia 489 no rank 2648079 0 1 Blautia sp. YL58 489 1 1796616 species 0 0 1322 species 1 703 Blautia hansenii 5976 Cellulosilyticum 1 0 698776 genus 2 2 5974 Cellulosilyticum lentocellum 0 29360 species 1 Anaerotignum 714 1 2 2039240 genus 0 1 713 Anaerotignum propionicum 28446 species 0 1 520 1 0 2719231 genus 1 species 84030 0 [Clostridium] saccharolyticum 520 737 0 genus 2719313 1 [Clostridium] bolteae 737 1 0 208479 species Lachnoclostridium 2404 1 4 0 1506553 genus 8 Lachnoclostridium phocaeense 272 1 0 1871021 species species 66219 0 1 1566 Lachnoclostridium phytofermentans 1 no rank 2608895 0 558 Lachnoclostridium sp. YL32 558 1 1834196 species 0 2569097 genus 0 1 2174 2174 [Eubacterium] hallii 0 39488 species 1 1 317 Roseburia 1 0 841 genus 2 1 species 301301 0 Roseburia hominis 316 1 1033 Anaerostipes 1 0 genus 207244 2 1 species 649756 0 Anaerostipes hadrus 1032 1293 1 0 28050 genus 0 39485 species 1 1293 [Eubacterium] eligens 919 0 no rank 186928 2 523 [Eubacterium] rectale 0 39491 species 1 species 712991 0 1 396 Lachnospiraceae bacterium oral taxon 500 5 68298 family 0 16 Syntrophomonadaceae 1037 1 1 0 genus 129001 2 1 338 Syntrophothermus 86170 species 0 1 337 Syntrophothermus lipocalidus Syntrophomonas 683 1 2 862 genus 0 4 679 Syntrophomonas wolfei 0 species 863 1 1 336 Heliobacteriaceae 10 31984 family 0 2 2697 genus 0 1 326 326 Heliobacterium modesticaldum 0 35701 species 1 12 0 family 186804 6 Peptostreptococcaceae 12137 1 1 Filifactor 735 5 2 genus 44259 0 1 0 species 143361 Filifactor alocis 730 2824 Paeniclostridium 1 0 genus 1849828 2 7 2817 Paeniclostridium sordellii 0 species 1505 1 Peptoclostridium 403 1 2 genus 1481960 0 1 Peptoclostridium acidaminophilum 402 1 species 1731 0 1 0 no rank 1411023 833 Peptostreptococcaceae bacterium oral taxon 929 833 1 species 2081703 0 1870884 genus 0 2 3 5804 Clostridioides 1 1496 species 0 1 5801 Clostridioides difficile 2 0 186831 genus 4 Acetoanaerobium 1532 1 1 0 1511 species Acetoanaerobium sticklandii 1528 8 0 538999 no rank 2411 430 1 0 genus 1392389 1 1297617 species 0 Intestinimonas butyriciproducens 430 446 0 family 539000 2 Thermaerobacter 446 1 2 genus 73918 0 1 1 0 species 73919 Thermaerobacter marianensis 445 476 1 genus 2717089 0 Mordavella sp. Marseille-P3756 476 1 species 2086584 0 1 Clostridiales Family XIII. Incertae Sedis 1059 4 4 0 family 543314 1 Mogibacterium 578 6 2 0 genus 86331 572 Mogibacterium diversum 0 114527 species 1 [Eubacterium] sulci 477 1 143393 species 0 6814 10 2304686 family 0 1 0 2304693 genus 754 1 0 species 84032 [Clostridium] thermosuccinogenes 754 genus 236752 0 1 849 1 0 236753 species Fastidiosipila sanguinis 849 15 0 1508657 genus 2 1 1008 Ruminiclostridium [Clostridium] cellulolyticum 993 1 species 1521 0 3113 2304692 genus 0 3 649 Ruminiclostridium thermocellum 1515 species 0 1 1 species 288965 0 [Clostridium] clariflavum 1247 1 1677857 species 0 Herbivorax saccincola 1217 323 1 1637257 genus 0 323 Mageeibacillus indolicus 884684 species 0 1 1 2304691 genus 0 463 [Clostridium] stercorarium 463 1 0 1510 species 2305130 no rank 0 1 304 304 Ruminiclostridium sp. KB18 0 species 1834198 1 135571 Clostridiaceae 1 0 31979 family 41 109 genus 1485 0 30 554 127226 Clostridium 1 Clostridium formicaceticum 1690 1 0 species 1497 Clostridium tyrobutyricum 1997 1 1519 species 0 Clostridium tetani 2845 1 0 species 1513 1 169679 species 0 Clostridium saccharobutylicum 8379 Clostridium argentinense 2915 1 29341 species 0 1 species 1494 0 Clostridium cochlearium 2102 0 species 1534 1 3154 Clostridium kluyveri 2791 Clostridium cellulovorans 0 1493 species 1 Clostridium botulinum 34252 1 0 1491 species 2857 Clostridium sporogenes species 1509 0 1 3682 Clostridium carboxidivorans 0 species 217159 1 0 84022 species 1 1643 Clostridium aceticum 1 0 species 1542 Clostridium novyi 2114 species 1502 0 1 5679 Clostridium perfringens 0 1548 species 1 3681 Clostridium scatologenes Clostridium acetobutylicum 2464 1 species 1488 0 2 0 no rank 2614128 1154 1 species 755731 0 Clostridium sp. BNL1100 940 1 1042156 species 0 Clostridium sp. SY8519 214 4761 Clostridium baratii species 1561 0 1 Clostridium butyricum 4535 1 species 1492 0 3108 Clostridium bornimense 0 1216932 species 1 2197 Clostridium autoethanogenum 84023 species 0 1 Clostridium saccharoperbutylacetonicum 5439 1 0 species 36745 1 0 species 1520 Clostridium beijerinckii 6422 2918 Clostridium estertheticum 238834 species 0 1 Clostridium pasteurianum 6040 1 0 1501 species 1 species 1538 0 Clostridium ljungdahlii 2275 3077 Clostridium taeniosporum 0 species 394958 1 2501 Clostridium chauvoei 46867 species 0 1 2 0 genus 390805 2 1 1111 Geosporobacter 1 species 1424294 0 Geosporobacter ferrireducens 1109 1 4023 Candidatus Arthromitus 49 0 49082 genus 4 0 no rank 2638829 3 3974 Candidatus Arthromitus sp. SFB-rat-Yit 1569 1 1041504 species 0 1194 Candidatus Arthromitus sp. SFB-mouse 49118 species 0 1 1 0 1508644 species Candidatus Arthromitus sp. SFB-mouse-NL 1211 Mordavella 4 1 1981033 genus 0 3 3 114627 genus 0 1 Alkaliphilus 3098 0 461876 species 1 1030 Alkaliphilus oremlandii Alkaliphilus metalliredigens 2065 1 208226 species 0 Peptococcaceae 12418 1 27 186807 family 0 35 4 0 genus 79206 7 Desulfosporosinus 2672 1 1 species 79209 0 Desulfosporosinus meridiei 783 0 species 1563 1 796 Desulfosporosinus orientis 1086 Desulfosporosinus acidiphilus 885581 species 0 1 618 genus 2282742 0 1 1 species 58138 0 Desulfotomaculum acetoxidans 618 14 1562 genus 0 5 1 2195 Desulfotomaculum 1 0 1833852 species Desulfotomaculum ferrireducens 434 440 Desulfotomaculum ruminis 1564 species 0 1 Desulfotomaculum reducens 832 1 0 species 59610 475 Desulfotomaculum nigrificans 1565 species 0 1 1 1097 Dehalobacter 24 0 genus 56112 4 1 0 55583 species Dehalobacter restrictus 313 760 2 0 no rank 2635733 Dehalobacter sp. CF 383 1 0 species 1131462 377 Dehalobacter sp. DCA species 1147129 0 1 2 0 471826 genus 3 Candidatus Desulforudis 359 1 0 471827 species 1 356 Candidatus Desulforudis audaxviator 36853 genus 0 5 13 2686 Desulfitobacterium 1 1 0 36854 species Desulfitobacterium dehalogenans 714 1 49338 species 0 Desulfitobacterium hafniense 751 Desulfitobacterium dichloroeliminans 637 1 233055 species 0 142877 species 0 1 571 Desulfitobacterium metallireducens Thermincola 506 1 2 0 genus 278993 2 species 863643 0 1 504 Thermincola potens 51196 genus 0 1 401 species 51197 0 1 401 Syntrophobotulus glycolicus 1 0 51514 genus 769 Dehalobacterium formicoaceticum 769 1 0 species 51515 0 genus 2282740 1 1080 1 102134 species 0 Desulfotomaculum gibsoniae 1080 1 Symbiobacteriaceae 529 7 2 0 543349 family 522 1 2733 genus 0 1 species 2734 0 Symbiobacterium thermophilum 522 2 3 216572 family 0 1 Oscillospiraceae 416 0 genus 459786 2 1 414 Oscillibacter 1 1 0 species 351091 Oscillibacter valericigenes 413 261 2 family 990719 0 Christensenella 261 1 2 genus 990721 0 2 0 1805714 species 1 259 Christensenella massiliensis 1 1206 Natranaerobiales 6 order 485256 0 4 5 family 485255 0 3 1 1200 Natranaerobiaceae 1 1195 Natranaerobius 13 375928 genus 0 2 species 375929 0 1 1182 Natranaerobius thermophilus 1200 order 2770089 0 3 849 2 0 family 2770092 1 Tepidanaerobacter 849 1 2 genus 499228 0 1 0 species 499229 Tepidanaerobacter acetatoxydans 848 family 2770093 0 1 351 1 291988 genus 0 351 351 Thermosediminibacter oceani 291990 species 0 1 1 Thermoanaerobacterales 24143 47 34 order 68295 0 334 543372 family 0 1 1 0 genus 252965 334 0 252966 species 1 334 Mahella australiensis 19 family 186814 0 17 1 11648 Thermoanaerobacteraceae 396 9 0 1754 genus 1 Thermoanaerobacter 9284 2361 2 2636821 no rank 0 Thermoanaerobacter sp. X514 1115 1 399726 species 0 1246 Thermoanaerobacter sp. X513 0 species 573062 1 1 0 46354 species Thermoanaerobacter wiegelii 1224 1057 Thermoanaerobacter pseudethanolicus species 496866 0 1 1024 Thermoanaerobacter kivui 0 species 2325 1 1047 Thermoanaerobacter mathranii 0 species 583357 1 Thermoanaerobacter italicus 1120 1 species 108150 0 1055 Thermoanaerobacter brockii species 29323 0 1 457 3 0 42857 no rank 180 1 42837 genus 0 180 Ammonifex degensii 0 species 42838 1 2 0 genus 44260 3 Moorella 277 1 Moorella thermoacetica 274 1 0 species 1525 258 genus 140458 0 1 Thermacetogenium phaeum 258 1 0 85874 species 993 0 249529 genus 1 993 Caldanaerobacter subterraneus 911092 species 0 1 3 2 0 genus 129957 1 Carboxydothermus 637 129958 species 0 1 634 Carboxydothermus hydrogenoformans 0 family 543371 13 10 10923 Thermoanaerobacterales Family III. Incertae Sedis 1 1 Caldicellulosiruptor 8087 114 9 44000 genus 0 species 31899 0 1 1112 Caldicellulosiruptor bescii Caldicellulosiruptor obsidiansis 971 1 0 species 717609 774 Caldicellulosiruptor kristjanssonii 0 species 52765 1 1 0 species 413888 Caldicellulosiruptor hydrothermalis 925 778 Caldicellulosiruptor lactoaceticus species 52766 0 1 1265 Caldicellulosiruptor kronotskyensis 0 413889 species 1 44001 species 0 1 1084 Caldicellulosiruptor saccharolyticus 1064 Caldicellulosiruptor owensensis species 55205 0 1 9 0 28895 genus 3 1 2826 Thermoanaerobacterium 1856 Thermoanaerobacterium thermosaccharolyticum 1517 species 0 1 961 Thermoanaerobacterium xylanolyticum species 29329 0 1 5 2 0 227387 family 1 Thermodesulfobiaceae 1191 1 227388 genus 0 1186 1186 Thermodesulfobium narugense 184064 species 0 1 1 Halanaerobiales 8554 18 12 53433 order 0 Halobacteroidaceae 2970 1 5 family 53434 0 7 0 42417 genus 2 11 1909 Halobacteroides 1 0 species 42422 1 1898 Halobacteroides halobius 1 Acetohalobium 1054 8 2 28186 genus 0 Acetohalobium arabaticum 1046 1 28187 species 0 33 6 972 family 0 1 Halanaerobiaceae 5566 19 3 genus 2330 0 1 Halanaerobium 4617 2115 Halanaerobium hydrogeniformans 0 species 656519 1 Halanaerobium praevalens 2483 1 species 2331 0 916 Halothermothrix 1 32636 genus 0 2 18 0 31909 species 1 898 Halothermothrix orenii 660 0 67819 phylum 5 4 0 class 1663419 5 1 660 Fimbriimonadia 1 4 order 1663425 0 1 Fimbriimonadales 656 655 Fimbriimonadaceae 1 0 1663426 family 3 3 0 1005038 genus 2 3 652 Fimbriimonas 1 Fimbriimonas ginsengisoli 649 1 0 species 1005039 clade 1798711 0 158 4522718 158 0 phylum 1117 73 Cyanobacteria 4522718 1 46 0 1301283 subclass 63840 117 25 0 1118 order 1 Chroococcales 43094 Aphanothecaceae 12244 1 9 family 1890450 0 37 0 2546365 genus 2 2676 2676 2546366 species 0 2 1309 Cyanothece sp. PCC 8802 0 strain 395962 1 Cyanothece sp. PCC 8801 1367 1 strain 41431 0 2 genus 28070 0 5058 2613 1 0 2546356 species 2613 Cyanothece sp. PCC 7424 0 strain 65393 1 1 species 2546359 0 2445 Cyanothece sp. PCC 7822 2445 1 strain 497965 0 1651 1 genus 1453359 0 Candidatus Atelocyanobacterium thalassa 1651 1 713887 species 0 1712 1 263510 genus 0 1 2546360 species 0 1712 Cyanothece sp. ATCC 51142 1712 1 strain 43989 0 0 no rank 92682 2 1110 1110 Halothece 1 76023 genus 0 2 7 1103 2632878 no rank 0 1 Halothece sp. PCC 7418 1103 1 species 65093 0 1 20127 Chroococcaceae 111 0 1890464 family 8 genus 102231 0 2 12 1567 Gloeocapsa 1 1 0 2623012 no rank 1555 Gloeocapsa sp. PCC 7428 1555 1 0 1173026 species Chondrocystis 12605 1 2 268175 genus 0 2 no rank 2648896 0 1 12603 2005460 species 0 1 12603 Chondrocystis sp. NIES-4102 24 3 0 genus 669357 1 Geminocystis 5844 no rank 2625037 0 2 5820 3483 Geminocystis sp. NIES-3708 1615909 species 0 1 Geminocystis sp. NIES-3709 2337 1 species 1617448 0 14 0 family 1890452 3 1 2632 Cyanobacteriaceae 1 2618 Cyanobacterium 11 0 genus 102234 2 Cyanobacterium aponinum 2607 1 0 379064 species 4 0 1890449 family 24 Microcystaceae 7974 1 7950 Microcystis 1 1125 genus 0 3 47 Microcystis aeruginosa 6149 1 species 1126 0 2643300 no rank 0 1 1754 1754 Microcystis sp. MC19 0 species 1967666 1 1 20746 Oscillatoriales 223 0 1150 order 21 Coleofasciculaceae 774 1 3 family 1892251 0 39 21 2 genus 63132 0 1 Geitlerinema 735 0 no rank 2648775 1 714 714 Geitlerinema sp. PCC 7407 0 1173025 species 1 5330 Microcoleaceae 1 family 1892252 0 5 40 Trichodesmium 4198 1 2 0 1205 genus 7 Trichodesmium erythraeum 4191 1 1206 species 0 16 0 44471 genus 2 1 1092 Microcoleus 2642155 no rank 0 1 1076 1 1173027 species 0 Microcoleus sp. PCC 7113 1076 1 12042 Oscillatoriaceae 117 family 1892254 0 6 3 0 genus 1158 24 Oscillatoria 6944 1 1 0 species 482564 Oscillatoria nigro-viridis 2885 Oscillatoria acuminata 4035 1 species 118323 0 1 4981 Moorea 29 genus 1155738 0 2 0 1155739 species 1 4952 Moorea producens 1 1601 Gomontiellaceae 10 0 family 1892255 3 8 0 genus 241421 2 1 1591 Crinalium 241425 species 0 1 1583 Crinalium epipsammum 91 0 1892249 family 3 1 776 Cyanothecaceae Cyanothece 685 1 2 0 43988 genus 90 595 0 2649277 no rank 1 1 species 395961 0 Cyanothece sp. PCC 7425 595 Gloeobacteria 1644 1 6 307596 class 0 11 21 0 307595 order 5 1 1633 Gloeobacterales 22 4 1890422 family 0 1 Gloeobacteraceae 1612 1590 Gloeobacter 1 0 33071 genus 3 4 779 Gloeobacter violaceus 33072 species 0 1 807 Gloeobacter kilaueensis 1416614 species 0 1 7806 Pleurocapsales 1 order 52604 0 8 9 Hyellaceae 1450 1 3 0 family 1890500 34 8 genus 44474 0 2 1 1416 Pleurocapsa 0 species 54308 1 1408 Pleurocapsa minor 0 1890498 family 4 21 6347 Dermocarpellaceae 1 genus 102115 0 3 61 6326 Stanieria 1 3937 0 2642663 no rank 1 0 1807358 species 1 3937 Stanieria sp. NIES-3757 Stanieria cyanosphaera 2328 1 species 102116 0 1 1983111 no rank 0 1224 718217 species 0 1 1224 cyanobacterium endosymbiont of Epithemia turgida 192 34 order 1161 0 1 Nostocales 67973 1 Rivulariaceae 5663 83 3 family 1185 0 2 genus 373984 0 11 Rivularia 5580 1 no rank 2676603 0 1 5569 Rivularia sp. PCC 7116 5569 1 373994 species 0 0 family 2661849 8 18999 1 18999 Calothrix 111 0 genus 1186 8 0 2619626 no rank 6 16229 2005461 species 0 1 2496 Calothrix sp. NIES-4101 3286 Calothrix sp. NIES-4071 species 2005469 0 1 0 99598 species 1 2403 Calothrix sp. PCC 7507 0 species 1337936 1 1990 Calothrix sp. 336/3 Calothrix sp. NIES-2098 2696 1 species 1954171 0 1 species 2005462 0 Calothrix sp. NIES-3974 3358 2659 Calothrix parietina species 32054 0 1 1 Nostocaceae 33607 124 18 1162 family 0 6733 Anabaena 1 0 1163 genus 4 48 2619674 no rank 0 2 4218 1 0 species 1647413 Anabaena sp. WA102 2219 0 46234 species 1 1999 Anabaena sp. 90 2467 Anabaena cylindrica 1165 species 0 1 0 genus 264688 3 8 4133 Trichormus 1 Trichormus azollae 2110 1 0 species 1164 1 0 species 264691 Trichormus variabilis 2015 0 genus 1177 10 138 22617 Nostoc 1 17294 0 2593658 no rank 7 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 2202 1 0 species 1618022 2394 Nostoc sp. CENA543 0 1869241 species 1 2335 Nostoc sp. NIES-3756 species 1751286 0 1 3023 Nostoc sp. PCC 7524 0 28072 species 1 0 species 1261031 1 2312 Nostoc sp. 'Peltigera membranacea cyanobiont N6' Nostoc sp. PCC 7120 2050 1 0 species 103690 Nostoc sp. PCC 7107 2978 1 species 317936 0 1 0 species 272131 Nostoc punctiforme 1910 1 0 species 1306274 Nostoc flagelliforme 3275 0 1219117 no rank 1 1935 0 species 1940762 1 1935 Nostocales cyanobacterium HT-58-2 0 1892263 family 3 6 7577 Hapalosiphonaceae 1 2 1190 genus 0 29 Fischerella 7571 1 7542 0 no rank 494603 1 1 0 1752063 species Fischerella sp. NIES-3754 7542 425 0 1890424 order 58 1 4375519 Synechococcales 1 Pseudanabaenaceae 3053 15 3 0 1890436 family 3038 Pseudanabaena 1 0 1152 genus 2 11 2593292 no rank 0 1 3027 3027 Pseudanabaena sp. PCC 7367 82654 species 0 1 5 1890428 family 0 2 Merismopediaceae 3196 1 3194 Synechocystis 1 1142 genus 0 4 61 3 no rank 2640012 0 3133 Synechocystis sp. IPPAS B-1465 622 1 0 2116702 species 1889 Synechocystis sp. PCC 6714 0 species 1147 1 1 0 species 1148 Synechocystis sp. PCC 6803 622 0 family 2303730 2 2185 2185 Halomicronema 1 170610 genus 0 2 8 1209493 species 0 1 2177 Halomicronema hongdechloris 1 Synechococcaceae 953320 119 33 family 1890426 0 486 genus 146785 0 1 486 Thermosynechococcus elongatus 0 species 146786 1 3 167375 genus 0 55 Cyanobium 10221 1 0 2627006 no rank 1 5299 1 0 species 1851505 Cyanobium sp. NIES-981 5299 Cyanobium gracile 4867 1 59930 species 0 13 0 genus 13034 2 1 1500 Dactylococcopsis 1487 Dactylococcopsis salina 0 species 292566 1 genus 1129 0 26 2036 940994 Synechococcus 1 1 species 33070 0 Synechococcus lividus 474 0 32046 species 1 710 Synechococcus elongatus 0 2626047 no rank 23 937774 0 585425 species 1 9515 Synechococcus sp. KORDI-52 1916956 species 0 1 3934 Synechococcus sp. SynAce01 Synechococcus sp. CC9311 1918 1 0 64471 species 65582 Synechococcus sp. RCC307 0 316278 species 1 Synechococcus sp. CC9902 2923 1 0 316279 species Synechococcus sp. CC9605 11487 1 0 species 110662 species 195248 0 1 436 Synechococcus sp. PCC 8807 455 Synechococcus sp. PCC 7117 195498 species 0 1 1140 Synechococcus sp. PCC 7502 species 1173263 0 1 0 374982 species 1 460 Synechococcus sp. PCC 73109 321327 species 0 1 539 Synechococcus sp. JA-3-3Ab 1 374981 species 0 Synechococcus sp. PCC 7003 439 species 166314 0 1 11095 Synechococcus sp. WH 8109 1 species 1280380 0 Synechococcus sp. KORDI-100 12801 Synechococcus sp. WH 8102 340016 1 0 84588 species 1 0 species 1827144 Synechococcus sp. NIES-970 537 Synechococcus sp. JA-2-3B'a(2-13) 602 1 0 species 321332 453 Synechococcus sp. PCC 7002 species 32049 0 1 580 Synechococcus sp. PCC 6312 195253 species 0 1 Synechococcus sp. WH 7803 6549 1 species 32051 0 species 1350461 0 1 650 Synechococcus sp. UTEX 2973 species 29410 0 1 342558 Synechococcus sp. WH 8103 123105 Synechococcus sp. KORDI-49 species 585423 0 1 3 3 0 1890429 family 1 Acaryochloridaceae 2545 Acaryochloris 2542 1 2 0 155977 genus 7 1 0 species 155978 Acaryochloris marina 2535 37 6 0 1890438 family 1 Leptolyngbyaceae 3863 1 3826 Leptolyngbya 28 0 genus 47251 5 3 no rank 2650499 0 3039 1 species 111781 0 Leptolyngbya sp. PCC 7376 1341 0 species 1080068 1 1054 Leptolyngbya sp. O-77 1 0 1752064 species Leptolyngbya sp. NIES-3755 644 1184 species 0 1 759 Leptolyngbya boryana 5 0 1213 family 21 Prochloraceae 3406932 1 159 4 1218 genus 0 1 Prochlorococcus 3406911 0 species 1219 1 2636728 Prochlorococcus marinus 770024 0 no rank 2627481 2 1 species 1501269 0 Prochlorococcus sp. MIT 0801 17806 1 0 species 1501268 Prochlorococcus sp. MIT 0604 752218 12 0 1890505 order 4 1 4639 Chroococcidiopsidales 1890528 family 0 3 53 4627 Chroococcidiopsidaceae 1 Chroococcidiopsis 4574 1 2 0 genus 54298 10 4564 Chroococcidiopsis thermalis 54299 species 0 1 57 203691 phylum 0 42296 0 203692 class 57 108 42296 Spirochaetia 1 73 0 136 order 40 1 26595 Spirochaetales 1 16714 Borreliaceae 42 0 1643685 family 17 1 9691 Borrelia 179 0 138 genus 8 Borrelia duttonii 3334 1 40834 species 0 Borrelia parkeri 665 1 141 species 0 849 Borrelia hermsii species 140 0 1 1 0 47466 species Borrelia miyamotoi 1780 Borrelia turicatae 764 1 0 species 142 Borrelia anserina 752 1 143 species 0 1368 Borrelia recurrentis 44449 species 0 1 1 6981 Borreliella 397 0 64895 genus 8 species 29519 0 1 1551 Borreliella garinii species 64897 0 1 850 Borreliella bissettii 688 Borreliella valaisiana 0 62088 species 1 species 664662 0 1 769 Borreliella bavariensis Borreliella afzelii 761 1 0 29518 species Borrelia mayonii 967 1 species 1674146 0 Borreliella burgdorferi 998 1 species 139 0 1 9808 Spirochaetaceae 72 0 137 family 22 157 genus 0 12 31 5083 Treponema 1 150829 species 0 1 322 Treponema azotonutricium Treponema pedis 618 1 409322 species 0 759 Treponema primitia species 88058 0 1 572 Treponema denticola 158 species 0 1 Treponema brennaborense 311 1 81028 species 0 Treponema putidum 674 1 0 221027 species 1 0 species 167 Treponema succinifaciens 592 1 2638727 no rank 0 385 1 0 species 1539298 Treponema sp. OMZ 838 385 Treponema pallidum 169 1 0 160 species Treponema paraluiscuniculi 251 1 0 53435 species Treponema caldarium 399 1 0 215591 species 916 Sphaerochaeta 1 0 399320 genus 4 2 1 species 1131703 0 Sphaerochaeta globosa 257 273376 species 0 1 410 Sphaerochaeta coccoides 1 0 1131707 species Sphaerochaeta pleomorpha 247 1 0 genus 1911556 548 1 0 species 55206 Sediminispirochaeta smaragdinae 548 genus 1616789 0 2 2 2115 Salinispira 1 1 0 species 1307761 Salinispira pacifica 2113 2 0 146 genus 1074 1 0 species 154 Spirochaeta thermophila 654 46355 species 0 1 420 Spirochaeta africana 1 Brachyspirales 9260 19 7 0 1643686 order 9241 Brachyspiraceae 1 0 143786 family 6 4 1 Brachyspira 9237 38 5 29521 genus 0 1 84377 species 0 Brachyspira intermedia 2004 2824 Brachyspira pilosicoli 0 species 52584 1 Brachyspira hyodysenteriae 2306 1 159 species 0 1 species 84378 0 Brachyspira murdochii 2065 0 order 1643688 9 6333 47 170 family 0 9 1 6333 Leptospiraceae Turneriella 378 1 2 338321 genus 0 2 1 0 species 29510 Turneriella parva 376 1 5908 Leptospira 27 171 genus 0 6 1 173 species 0 Leptospira interrogans 2352 1 0 species 28183 Leptospira santarosai 650 1 174 species 0 Leptospira borgpetersenii 1155 Leptospira biflexa 1042 1 0 species 172 1 28452 species 0 Leptospira alstonii 682 4503 14 40117 phylum 0 1 4503 Nitrospira 27 class 203693 0 14 62 13 order 189778 0 1 Nitrospirales 4476 1 Nitrospiraceae 4414 13 12 189779 family 0 1 Thermodesulfovibrio 1876 3 2 0 genus 28261 1873 Thermodesulfovibrio yellowstonii 0 species 28262 1 4 genus 179 0 15 Leptospirillum 1021 1 280 1 0 species group 261386 Leptospirillum ferriphilum 280 1 species 178606 0 453 1 0 species group 655606 453 Leptospirillum ferrooxidans 180 species 0 1 261385 species group 0 1 273 273 Leptospirillum sp. Group II 'CF-1' species 1660083 0 1 1 Nitrospira 1504 10 5 1234 genus 0 0 species 330214 1 269 Nitrospira defluvii 1 1715989 species 0 Candidatus Nitrospira inopinata 295 Nitrospira moscoviensis 614 1 0 species 42253 0 1325564 species 1 316 Nitrospira japonica superkingdom 2157 0 287 127711 72 1783276 clade 0 1 1 0 1801631 phylum 72 1 0 genus 2490204 72 0 species 1920749 1 72 Candidatus Micrarchaeota archaeon Mia14 24576 59 0 1783275 clade 2 51967 phylum 0 196 196 Candidatus Korarchaeum 1 498845 genus 0 2 1 1 498846 species 0 Candidatus Korarchaeum cryptofilum 195 phylum 28889 0 41 9690 41 0 class 183924 4 Thermoprotei 9690 1 5515 0 order 2281 11 1 Sulfolobaceae 5515 18 11 family 118883 0 1 12914 genus 0 731 731 Acidianus hospitalis species 563177 0 1 293 genus 2284 0 4 1 2304 Sulfolobus 0 no rank 2641160 1 610 species 1891280 0 1 610 Sulfolobus sp. A20 1030 Sulfolobus islandicus 0 species 43080 1 1 species 2285 0 Sulfolobus acidocaldarius 371 1 3 genus 41980 0 1 Metallosphaera 1083 1 1006005 species 0 Metallosphaera cuprina 621 Metallosphaera sedula 461 1 species 43687 0 585 2100760 genus 0 1 0 2287 species 1 585 Sulfolobus solfataricus 1 0 genus 69655 794 Sulfolobus tokodaii 794 1 species 111955 0 2 order 871006 0 803 1 0 871007 family 100 100 1 genus 105850 0 Acidilobus saccharovorans 100 1 species 242703 0 0 family 255472 1 703 703 1 0 genus 200414 0 200415 species 1 703 Caldisphaera lagunensis 1 1920 Desulfurococcales 7 0 114380 order 16 15 2307 family 0 4 1 604 Pyrodictiaceae 58 1 0 genus 2308 58 Pyrodictium delaneyi 0 1273541 species 1 54251 genus 0 1 202 202 Pyrolobus fumarii species 54252 0 1 1 genus 54247 0 329 Hyperthermus butylicus 329 1 0 species 54248 1 1309 Desulfurococcaceae 39 0 2272 family 11 192 0 genus 2273 2 1 0 species 94694 Desulfurococcus amylolyticus 135 1 0 2275 species Desulfurococcus mucosus 57 2 genus 54258 0 190 1 0 54259 species Ignicoccus islandicus 93 1 species 160233 0 Ignicoccus hospitalis 97 genus 54253 0 1 49 1 0 54254 species Thermosphaera aggregans 49 727 Staphylothermus 1 genus 2279 0 3 14 1 species 2280 0 Staphylothermus marinus 469 Staphylothermus hellenicus 244 1 84599 species 0 2 477695 genus 0 14 Thermogladius 112 1 Thermogladius calderae 98 1 0 1200300 species 2266 order 0 11 1448 774 2267 family 0 6 168 1 genus 76886 0 Caldivirga maquilingensis 168 1 0 76887 species genus 2270 0 2 201 1 2271 species 0 Thermoproteus tenax 93 108 Thermoproteus uzoniensis species 184117 0 1 311 2 164450 genus 0 200 Vulcanisaeta moutnovskia 0 985052 species 1 Vulcanisaeta distributa 111 1 species 164451 0 0 genus 2276 1 94 species 2277 0 1 94 Pyrobaculum islandicum 674 5 0 family 114378 61 2268 genus 0 5 1 674 Thermofilum 0 species 1550241 1 172 Thermofilum uzonense species 1483572 0 1 151 Thermofilum carboxyditrophus 128 Thermofilum pendens 0 species 2269 1 Thermofilum adornatus 162 1 species 1365176 0 16 0 651137 phylum 14690 Nitrosopumilales 2722 1 6 order 31932 0 4 1 Nitrosopumilaceae 2718 9 5 338190 family 0 6 3 0 genus 338191 1 Nitrosopumilus 1679 0 species 1229909 1 861 Candidatus Nitrosopumilus sediminis 812 Candidatus Nitrosopumilus adriaticus 0 species 1580092 1 1030 1993653 genus 0 1 species 1898749 0 1 1030 Candidatus Nitrosomarinus catalina 7597 5 0 1643678 class 1 Candidatus Nitrosocaldales 5051 4 2 order 1968909 0 5047 1 1968910 family 0 5047 1 498374 genus 0 0 species 2045011 1 5047 Candidatus Nitrosocaldus islandicus 2546 Nitrososphaerales 1 0 1033996 order 3 2 1 2 family 1033997 0 1 Nitrososphaeraceae 2544 genus 497726 0 1 2543 0 1034015 species 1 2543 Nitrososphaera viennensis 0 no rank 651142 5 4371 454 Candidatus Nitrosotenuis 1 0 genus 1825023 3 7 0 1603555 species 1 249 Candidatus Nitrosotenuis cloacae species 1846278 0 1 198 Candidatus Nitrosotenuis sp. AQ6f 9 2 0 genus 1593364 1 Candidatus Nitrosopelagicus 3917 0 1410606 species 1 3908 Candidatus Nitrosopelagicus brevis Euryarchaeota 103063 1 227 0 phylum 28890 3 23177 0 2283794 clade 43 1 10846 Methanobacteria 9 class 183925 0 25 1 10837 Methanobacteriales 15 2158 order 0 24 1 family 2178 0 660 genus 2179 0 1 660 660 Methanothermus fervidus 2180 species 0 1 1 Methanobacteriaceae 10162 4 22 2159 family 0 5179 Methanobrevibacter 1 genus 2172 0 7 11 Methanobrevibacter millerae 1039 1 species 230361 0 692 Methanobrevibacter ruminantium species 83816 0 1 961 Methanobrevibacter smithii 2173 species 0 1 Methanobrevibacter olleyae 1119 1 0 294671 species 1357 2638681 no rank 0 2 0 species 1609968 1 580 Methanobrevibacter sp. YE315 0 species 224719 1 777 Methanobrevibacter sp. AbM4 11 8 2160 genus 0 1 Methanobacterium 3324 species 877455 0 1 881 Methanobacterium lacus 2627676 no rank 0 2 677 277 Methanobacterium sp. MB1 0 1379702 species 1 1 0 1911685 species Methanobacterium sp. MZ-A1 400 Methanobacterium formicicum 450 1 0 2162 species 339 Methanobacterium congolense 0 species 118062 1 1 0 species 59277 Methanobacterium subterraneum 384 1 0 868131 species Methanobacterium paludis 582 5 0 145260 genus 7 Methanothermobacter 528 1 Methanothermobacter wolfeii 97 1 species 145261 0 92 Methanothermobacter thermautotrophicus 145262 species 0 1 1 0 no rank 2631116 84 species 866790 0 1 84 Methanothermobacter sp. CaT2 1 145263 species 0 Methanothermobacter marburgensis 248 2316 genus 0 1 1127 1127 Methanosphaera stadtmanae 0 2317 species 1 Methanococci 12331 1 18 183939 class 0 4 17 2182 order 0 7 Methanococcales 12327 1 10 7 0 2183 family 1 Methanococcaceae 7731 0 genus 155862 1 588 588 Methanothermococcus okinawensis 0 species 155863 1 7133 Methanococcus 1 genus 2184 0 5 6 1 0 species 39152 Methanococcus maripaludis 3032 0 2187 species 1 702 Methanococcus vannielii Methanococcus voltae 2538 1 0 species 2188 855 Methanococcus aeolicus species 42879 0 1 5 9 family 196117 0 1 Methanocaldococcaceae 4589 572 0 196119 genus 1 1 0 species 2189 Methanotorris igneus 572 0 genus 196118 7 8 4012 Methanocaldococcus 1 1 1301915 species 0 Methanocaldococcus bathoardescens 748 0 species 83171 1 594 Methanocaldococcus fervens 718 Methanocaldococcus jannaschii 2190 species 0 1 702 Methanocaldococcus vulcanius species 73913 0 1 532 Methanocaldococcus infernus 67760 species 0 1 2641196 no rank 0 1 710 species 644281 0 1 710 Methanocaldococcus sp. FS406-22 183968 class 0 41 7 8991 Thermococci 1 2 0 order 2258 40 1 8984 Thermococcales 5 39 family 2259 0 1 Thermococcaceae 8982 1 0 genus 83867 209 0 species 971279 1 209 Palaeococcus pacificus 8 8 0 genus 2260 1 Pyrococcus 1144 2 no rank 2629106 0 398 1 0 1183377 species Pyrococcus sp. ST04 232 Pyrococcus sp. NA2 166 1 342949 species 0 1 1609559 species 0 Pyrococcus kukulkanii 147 species 2261 0 1 219 Pyrococcus furiosus Pyrococcus yayanosii 67 1 species 1008460 0 0 53953 species 1 174 Pyrococcus horikoshii 1 29292 species 0 Pyrococcus abyssi 131 2263 genus 0 29 35 7624 Thermococcus 1 177 Thermococcus litoralis 2265 species 0 1 Thermococcus gorgonarius 72 1 71997 species 0 species 2264 0 1 105 Thermococcus celer 190 Thermococcus chitonophagus 0 species 54262 1 1 0 1505907 species Thermococcus eurythermalis 86 6 0 2627626 no rank 648 Thermococcus sp. 2319x1 142 1 species 1674923 0 88 Thermococcus sp. 5-4 2008440 species 0 1 1 246969 species 0 Thermococcus sp. AM4 154 Thermococcus sp. EXT12c 106 1 0 2016361 species 0 122420 species 1 61 Thermococcus sp. P6 1 species 1042877 0 Thermococcus sp. 4557 97 1 0 55802 species Thermococcus barophilus 397 0 49899 species 1 95 Thermococcus profundus 0 72803 species 1 3941 Thermococcus siculi Thermococcus gammatolerans 250 1 0 species 187878 Thermococcus peptonophilus 104 1 species 53952 0 Thermococcus nautili 130 1 195522 species 0 81 Thermococcus pacificus 71998 species 0 1 1 0 582419 species Thermococcus paralvinellae 296 83 Thermococcus onnurineus 0 342948 species 1 Thermococcus guaymasensis 99 1 0 110164 species 132 Thermococcus thioreducens 0 277988 species 1 98 Thermococcus radiotolerans 187880 species 0 1 1 species 172049 0 Thermococcus sibiricus 255 74 Thermococcus cleftensis 0 species 163003 1 Thermococcus kodakarensis 96 1 311400 species 0 86 Thermococcus barossii 54077 species 0 1 1 0 1712654 species Thermococcus piezophilus 94 4098 0 clade 2283796 19 520 2 1803510 clade 0 520 2 0 genus 379546 1 379547 species 0 Aciduliprofundum boonei 301 219 0 no rank 2633939 1 1 species 673860 0 Aciduliprofundum sp. MAR08-339 219 17 0 class 183967 3 Thermoplasmata 3578 1 2187 11 0 order 2301 3 1747776 family 0 16 Cuniculiplasmataceae 731 1 2 0 1747777 genus 29 Cuniculiplasma 715 1 686 Cuniculiplasma divulgatum 1673428 species 0 1 301 1 0 family 46630 301 0 46631 genus 1 301 Picrophilus torridus species 82076 0 1 123 1 0 1919231 no rank 1 species 1054217 0 Thermoplasmatales archaeon BRNA1 123 3 0 family 90142 682 3 0 genus 74968 2 Ferroplasma 682 1 1 species 97393 0 Ferroplasma acidarmanus 340 74969 species 0 1 340 Ferroplasma acidiphilum 350 3 family 46659 0 1 0 genus 2302 3 1 350 Thermoplasma 207 Thermoplasma volcanium 50339 species 0 1 0 2303 species 1 142 Thermoplasma acidophilum 90 1 1234666 no rank 0 0 1495144 species 1 90 methanogenic archaeon ISO4-H5 1298 4 1235850 order 0 196 2517203 family 0 1 1 1291539 genus 0 196 1 species 1291540 0 Candidatus Methanomethylophilus alvus 196 1 1102 Methanomassiliicoccaceae 1 family 1577788 0 3 0 genus 1607807 1 100 0 1577791 species 1 100 Candidatus Methanoplasma termitum 1001 1 genus 1080709 0 Candidatus Methanomassiliicoccus intestinalis 1001 1 species 1406512 0 113 2290931 clade 0 65580 Methanomicrobia 20857 1 48 224756 class 0 9 1 17813 Methanosarcinales 42 0 order 94695 27 692 Methanosaetaceae 1 0 143067 family 3 3 689 0 2222 genus 2 species 301375 0 1 335 Methanosaeta harundinacea 2223 species 0 1 354 Methanothrix soehngenii 17079 Methanosarcinaceae 1 family 2206 0 23 21 13 0 genus 2207 11 Methanosarcina 13680 1 2644672 no rank 0 4 3023 Methanosarcina sp. WH1 509 1 0 species 1434102 Methanosarcina sp. MTP4 1026 1 0 1434100 species 1 1434103 species 0 Methanosarcina sp. WWM596 488 1 0 species 1434099 Methanosarcina sp. Kolksee 1000 1 0 species 38027 Methanosarcina siciliae 1942 Methanosarcina acetivorans 611 1 2214 species 0 0 2208 species 1 3645 Methanosarcina barkeri 1094 Methanosarcina vacuolata 0 species 2215 1 Methanosarcina horonobensis 621 1 0 418008 species 937 Methanosarcina lacustris species 170861 0 1 1 0 2209 species Methanosarcina mazei 1352 444 Methanosarcina thermophila 0 2210 species 1 465 1 196136 genus 0 1 species 39669 0 Methanosalsum zhilinae 465 genus 2220 0 1 204 0 species 420950 1 204 Methanolobus psychrophilus 1 0 genus 2321 1157 1157 Methanohalobium evestigatum 0 species 2322 1 2 0 2225 genus 674 Methanococcoides burtonii 333 1 0 species 29291 0 species 2226 1 341 Methanococcoides methylutens 1 Methanomethylovorans 228 14 2 101191 genus 0 1 0 101192 species Methanomethylovorans hollandica 214 2 0 2175 genus 650 Methanohalophilus mahii 359 1 species 2176 0 291 Methanohalophilus halophilus species 2177 0 1 1 Methanocellales 809 5 4 0 order 570264 3 0 570265 family 804 3 0 570266 genus 3 Methanocella 804 1 species 1175445 0 1 655 Methanocella arvoryzae 1 species 1175444 0 Methanocella conradii 146 0 2191 order 16 24 2226 Methanomicrobiales 1 15 4 family 1198451 0 1 Methanoregulaceae 687 395331 genus 0 2 444 1 0 species 882104 Methanoregula formicica 141 0 species 358766 1 303 Methanoregula boonei 228 1 0 genus 475087 Methanosphaerula palustris 228 1 0 species 475088 230 family 88404 0 2 14 0 genus 2192 2 1 230 Methanocorpusculum Methanocorpusculum labreanum 216 1 0 83984 species 246 196137 family 0 2 1 Methanospirillum 246 14 2 0 2202 genus 0 2203 species 1 232 Methanospirillum hungatei 1 Methanomicrobiaceae 1039 14 7 2194 family 0 4 0 genus 45989 4 1 791 Methanoculleus 1 no rank 2619537 0 218 0 86622 species 1 218 Methanoculleus sp. MAB1 0 species 2198 1 280 Methanoculleus marisnigri 289 Methanoculleus bourgensis 0 species 83986 1 1 234 Methanolacinia 1 0 230355 genus 2 0 species 54120 1 233 Methanolacinia petrolearia 137 0 183963 class 65 1 44723 Halobacteria 27 2235 order 0 25 Halobacteriales 5617 1 Halobacteriaceae 2104 1 10 0 family 2236 14 17 0 2239 genus 4 1 1353 Halobacterium Halobacterium hubeiense 479 1 1407499 species 0 383 Halobacterium salinarum 0 2242 species 1 474 1 2668073 no rank 0 751944 species 0 1 474 Halobacterium sp. DL1 2 2 0 genus 332246 1 Halalkalicoccus 346 344 Halalkalicoccus jeotgali 413810 species 0 1 0 genus 1656823 2 1 197 Halanaeroarchaeum 1 196 Halanaeroarchaeum sulfurireducens 0 species 1604004 1 194 1 0 genus 1980514 Halodesulfurarchaeum formicicum 194 1 0 1873524 species Haloarculaceae 3488 1 16 family 1963268 0 8 genus 2237 0 5 11 1325 Haloarcula 1 1 0 no rank 2624677 359 359 Haloarcula sp. CBA1115 species 1592728 0 1 1 0 1932004 species Haloarcula taiwanensis 266 1 species 2238 0 Haloarcula marismortui 330 1 0 51589 species Haloarcula hispanica 359 763 Natronomonas 1 0 genus 63743 3 3 403 Natronomonas moolapensis 0 416273 species 1 Natronomonas pharaonis 357 1 species 2257 0 Halorhabdus 562 1 3 0 genus 146825 6 300 Halorhabdus tiamatea species 430914 0 1 1 0 species 146826 Halorhabdus utahensis 256 445 Halorientalis 1 0 genus 1073987 2 1 1 no rank 2648975 0 444 0 species 1932360 1 444 Halorientalis sp. IM1011 1 Halomicrobium 385 2 2 0 203135 genus species 57705 0 1 383 Halomicrobium mukohataei 1 17054 Haloferacales 210 order 1644055 0 19 Halorubraceae 2817 1 8 0 1963271 family 10 5 2 1644057 genus 0 1 Salinigranum 1337 1 755307 species 0 Salinigranum rubrum 1332 6 2 genus 1209988 0 1 Halopenitus 496 Halopenitus persicus 490 1 0 1048396 species 3 0 56688 genus 5 Halorubrum 974 1 Halorubrum trapanicum 567 1 0 29284 species Halorubrum lacusprofundi 402 1 2247 species 0 699 2678336 no rank 0 1 halophilic archaeon DL31 699 1 756883 species 0 1 Haloferacaceae 13328 45 9 family 1644056 0 1 2972 Haloferax 21 0 2251 genus 4 1 35746 species 0 Haloferax gibbonsii 1192 Haloferax volcanii 1294 1 0 species 2246 1 species 2252 0 Haloferax mediterranei 465 2 0 genus 293431 17 Haloquadratum 9832 1 0 293091 species 1 9815 Haloquadratum walsbyi 0 60846 genus 2 8 479 Halogeometricum 1 0 60847 species 1 471 Halogeometricum borinquense 121 18 0 order 1644060 1 Natrialbales 21915 49 1644061 family 0 17 1 21794 Natrialbaceae 3 0 121871 genus 3 1 2198 Haloterrigena 673 Haloterrigena turkmenica 0 62320 species 1 Haloterrigena daqingensis 1522 1 species 588898 0 495 1 genus 2256 0 1 44930 species 0 Natronobacterium gregoryi 495 1 0 387342 genus 2 1 805 Halopiger 0 387343 species 1 804 Halopiger xanaduensis 1 1737 Halobiforma 4 genus 203193 0 2 species 229731 0 1 1733 Halobiforma lacisalsi 330 1 0 353799 genus 1 0 species 353800 Halostagnicola larsenii 330 Natrialba 14292 1 2 0 63742 genus 11 1 species 13769 0 Natrialba magadii 14281 599 1 genus 29287 0 29288 species 0 1 599 Natronococcus occultus 412 1269201 genus 0 1 2621923 no rank 0 1 412 412 Salinarchaeum sp. Harcht-Bsk1 0 1333523 species 1 88723 genus 0 3 5 877 Natrinema 1 Natrinema pellirubrum 471 1 species 69525 0 401 1 0 2622230 no rank species 406552 0 1 401 Natrinema sp. J7-2 183980 class 0 10 1214 1 1214 Archaeoglobales 2 2231 order 0 10 Archaeoglobaceae 1212 1 9 0 2232 family 1 1 genus 2233 0 5 1 792 Archaeoglobus 1 0 species 58290 Archaeoglobus veneficus 178 235 Archaeoglobus fulgidus species 2234 0 1 0 1316941 species 1 178 Archaeoglobus sulfaticallidus Archaeoglobus profundus 200 1 84156 species 0 188 0 genus 54260 1 188 Ferroglobus placidus 0 species 54261 1 2 190818 genus 0 231 1 0 species 113653 Geoglobus ahangari 120 0 565033 species 1 111 Geoglobus acetivorans 1 name 0 0