members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 30 7189 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4317 5151783 name 0 1 0 225 0 2157 superkingdom 8536 2 clade 1 0 1783276 phylum 2 0 1 1801631 2 genus 0 1 2490204 Candidatus Micrarchaeota archaeon Mia14 species 2 1920749 0 1 1064 clade 1783275 0 41 0 32 28889 793 phylum class 793 183924 32 0 11 0 114380 order 183 0 3 2307 29 family 1 0 2308 12 genus 1273541 0 1 species 12 Pyrodictium delaneyi genus 11 1 0 54247 Hyperthermus butylicus 54248 1 0 11 species 0 1 54251 6 genus 0 1 54252 6 species Pyrolobus fumarii family 154 8 0 2272 1 0 477695 genus 2 2 species 1 0 1200300 Thermogladius calderae genus 9 2273 2 0 Desulfurococcus amylolyticus 1 0 94694 species 6 Desulfurococcus mucosus 3 species 1 0 2275 54258 2 0 17 genus 0 1 54259 10 species Ignicoccus islandicus 1 0 160233 species 7 Ignicoccus hospitalis genus 25 54253 0 1 Thermosphaera aggregans species 25 1 0 54254 genus 101 0 2 2279 Staphylothermus hellenicus species 42 84599 1 0 2280 1 0 species 59 Staphylothermus marinus 2 0 871006 44 order 1 0 255472 34 family genus 34 0 1 200414 200415 0 1 34 species Caldisphaera lagunensis 1 0 871007 10 family 10 genus 105850 0 1 Acidilobus saccharovorans 1 0 242703 species 10 130 order 2266 11 0 1 0 7 2267 92 family 1 Thermoproteaceae 2276 1 0 9 genus 1 0 2277 species 9 Pyrobaculum islandicum genus 14 0 1 76886 Caldivirga maquilingensis 14 species 1 0 76887 genus 32 2 0 2270 Thermoproteus tenax species 22 1 0 2271 Thermoproteus uzoniensis 1 0 184117 species 10 36 genus 0 2 164450 0 1 164451 4 species Vulcanisaeta distributa Vulcanisaeta moutnovskia 985052 1 0 32 species 114378 4 0 38 family 4 0 2268 genus 38 Thermofilum uzonense 4 species 1 0 1550241 Thermofilum carboxyditrophus 1483572 0 1 species 14 species 5 0 1 2269 Thermofilum pendens species 15 1365176 1 0 Thermofilum adornatus 436 order 2281 0 8 0 8 118883 436 family genus 103 69655 1 0 Sulfolobus tokodaii 103 species 111955 0 1 3 0 2284 193 genus Sulfolobus islandicus 43080 0 1 species 113 Sulfolobus acidocaldarius 2285 0 1 31 species 2641160 1 0 49 no rank Sulfolobus sp. A20 1891280 1 0 species 49 genus 39 0 2 41980 5 species 43687 0 1 Metallosphaera sedula 0 1 1006005 species 34 Metallosphaera cuprina 43 genus 0 1 2100760 2287 1 0 species 43 Sulfolobus solfataricus 1 0 12914 genus 58 species 58 563177 1 0 Acidianus hospitalis 651137 0 8 267 phylum 55 no rank 651142 0 3 32 genus 1593364 1 0 Candidatus Nitrosopelagicus brevis 1 0 1410606 species 32 2 0 1825023 23 genus 1603555 0 1 species 16 Candidatus Nitrosotenuis cloacae Candidatus Nitrosotenuis sp. AQ6f 1846278 1 0 7 species 159 order 31932 3 0 338190 3 0 159 family 2 0 338191 113 genus Candidatus Nitrosopumilus sediminis species 51 0 1 1229909 Candidatus Nitrosopumilus adriaticus 1 0 1580092 species 62 46 genus 1993653 0 1 46 species 1898749 1 0 Candidatus Nitrosomarinus catalina 53 class 1643678 0 2 16 order 1968909 0 1 0 1 1968910 16 family 498374 0 1 16 genus Candidatus Nitrosocaldus islandicus 16 species 0 1 2045011 1033996 1 0 order 37 family 37 0 1 1033997 1 0 497726 37 genus Nitrososphaera viennensis species 37 0 1 1034015 phylum 4 51967 1 0 genus 4 498845 1 0 498846 0 1 4 species Candidatus Korarchaeum cryptofilum 0 183 28890 phylum 7470 clade 3893 2290931 0 86 Halobacteria 1 1235 class 46 0 183963 12 order 339 1644060 0 13 Natrialbaceae 1 4 family 339 1644061 0 13 34 genus 203193 1 0 Halobiforma lacisalsi species 34 0 1 229731 genus 34 0 1 29287 1 0 29288 34 species Natronococcus occultus 35 genus 63742 0 1 13769 1 0 species 35 Natrialba magadii 2256 0 1 12 genus Natronobacterium gregoryi 12 species 44930 0 1 1 genus 52 0 3 88723 Natrinema 1 25 no rank 1 0 2622230 Natrinema sp. J7-2 0 1 406552 species 25 26 species 1 0 69525 Natrinema pellirubrum 34 genus 1 0 353799 Halostagnicola larsenii 1 0 353800 34 species 1269201 1 0 29 genus 2621923 0 1 29 no rank 29 species 1333523 1 0 Salinarchaeum sp. Harcht-Bsk1 genus 51 2 0 121871 Haloterrigena turkmenica 0 1 62320 35 species Haloterrigena daqingensis species 16 1 0 588898 54 genus 387342 1 0 1 0 387343 species 54 Halopiger xanaduensis Halobacteriales 1 6 572 order 0 18 2235 399 family 0 11 1963268 2 Haloarculaceae 1 genus 131 0 4 2237 Haloarcula taiwanensis 34 species 1932004 0 1 Haloarcula marismortui 1 0 2238 35 species 0 1 2624677 no rank 30 species 30 0 1 1592728 Haloarcula sp. CBA1115 51589 1 0 32 species Haloarcula hispanica genus 62 0 2 63743 Natronomonas pharaonis 2257 0 1 species 36 Natronomonas moolapensis 26 species 1 0 416273 0 1 203135 genus 62 Halomicrobium mukohataei 62 species 57705 1 0 0 2 146825 genus 84 53 species 146826 1 0 Halorhabdus utahensis 31 species 0 1 430914 Halorhabdus tiamatea 58 genus 1073987 1 0 58 no rank 2648975 0 1 1932360 1 0 species 58 Halorientalis sp. IM1011 2236 0 6 family 167 0 1 1980514 genus 19 19 species 1 0 1873524 Halodesulfurarchaeum formicicum genus 20 1 0 332246 Halalkalicoccus jeotgali 413810 1 0 species 20 genus 19 1 0 1656823 species 19 1 0 1604004 Halanaeroarchaeum sulfurireducens 109 genus 0 3 2239 2242 0 1 37 species Halobacterium salinarum Halobacterium hubeiense 0 1 1407499 species 50 1 0 2668073 22 no rank Halobacterium sp. DL1 22 species 1 0 751944 14 0 1644055 312 order no rank 26 2678336 1 0 species 26 756883 1 0 halophilic archaeon DL31 150 family 0 6 1644056 genus 30 1 0 293431 Haloquadratum walsbyi 30 species 293091 1 0 genus 18 60846 0 1 1 0 60847 species 18 Halogeometricum borinquense Haloferax 1 2 genus 102 2251 4 0 Haloferax gibbonsii 35746 1 0 34 species Haloferax mediterranei 0 1 2252 species 35 Haloferax volcanii species 31 0 1 2246 Halorubraceae 1 family 136 7 0 1963271 1 genus 15 1209988 0 1 1048396 1 0 15 species Halopenitus persicus 7 3 0 56688 63 genus 1 Halorubrum Halorubrum trapanicum 1 0 29284 24 species Halorubrum lacusprofundi 32 species 2247 1 0 1 Salinigranum 1 2 0 1644057 genus 57 Salinigranum rubrum 755307 0 1 56 species Methanomicrobia 1 2658 class 0 40 224756 6 570264 0 2 109 order 2 0 570265 109 family 570266 0 2 109 genus 1175444 1 0 species 40 Methanocella conradii 69 species 0 1 1175445 Methanocella arvoryzae 2064 order 25 0 94695 4 4 0 143067 family 100 1 Methanosaetaceae 1 Methanothrix 2222 3 0 genus 96 1 Methanosaeta harundinacea 301375 0 1 36 species Methanothrix soehngenii 59 species 1 0 2223 family 1964 2206 21 0 84 genus 1 0 2220 420950 1 0 species 84 Methanolobus psychrophilus 1413 genus 2207 0 13 1 Methanosarcina 1 Methanosarcina vacuolata species 122 1 0 2215 Methanosarcina thermophila species 79 2210 1 0 Methanosarcina mazei 0 1 2209 161 species Methanosarcina siciliae 38027 0 1 120 species 325 no rank 2644672 4 0 Methanosarcina sp. WH1 species 57 0 1 1434102 1434100 1 0 species 109 Methanosarcina sp. MTP4 76 species 1 0 1434099 Methanosarcina sp. Kolksee Methanosarcina sp. WWM596 1434103 0 1 species 83 Methanosarcina horonobensis 1 0 418008 110 species Methanosarcina barkeri 322 species 0 1 2208 Methanosarcina lacustris 1 0 170861 53 species Methanosarcina acetivorans 120 species 0 1 2214 105 genus 101191 1 0 Methanomethylovorans hollandica 101192 1 0 species 105 2175 2 0 124 genus 2177 1 0 species 70 Methanohalophilus halophilus 2176 1 0 species 54 Methanohalophilus mahii 0 1 196136 65 genus Methanosalsum zhilinae 39669 1 0 65 species 2225 2 0 73 genus species 30 0 1 29291 Methanococcoides burtonii 43 species 0 1 2226 Methanococcoides methylutens 1 0 2321 100 genus Methanohalobium evestigatum species 100 2322 1 0 Methanomicrobiales 1 order 479 12 0 2191 1 173 family 0 5 2194 genus 132 4 0 45989 1 Methanoculleus 1 2619537 1 0 40 no rank 0 1 86622 species 40 Methanoculleus sp. MAB1 Methanoculleus bourgensis 83986 0 1 species 36 Methanoculleus marisnigri 55 species 0 1 2198 genus 41 0 1 230355 Methanolacinia petrolearia 54120 1 0 41 species 196137 1 0 family 59 2202 0 1 genus 59 0 1 2203 59 species Methanospirillum hungatei family 167 1198451 0 4 8 111 genus 395331 3 0 Methanoregula 1 0 1 882104 species 79 Methanoregula formicica Methanoregula boonei species 24 358766 1 0 0 1 475087 56 genus Methanosphaerula palustris species 56 1 0 475088 88404 1 0 family 79 genus 79 0 1 2192 83984 1 0 species 79 Methanocorpusculum labreanum 2283796 16 0 clade 480 clade 22 1803510 0 2 genus 22 379546 2 0 12 no rank 1 0 2633939 Aciduliprofundum sp. MAR08-339 12 species 673860 1 0 0 1 379547 10 species Aciduliprofundum boonei Thermoplasmata 1 5 458 class 0 14 183967 7 0 2301 order 297 no rank 34 1919231 0 1 1054217 1 0 species 34 Thermoplasmatales archaeon BRNA1 67 family 46630 0 1 0 1 46631 67 genus 82076 1 0 species 67 Picrophilus torridus 1747776 0 1 family 60 genus 60 0 1 1747777 species 60 1 0 1673428 Cuniculiplasma divulgatum family 78 0 2 46659 0 2 2302 genus 78 species 11 2303 1 0 Thermoplasma acidophilum 50339 1 0 67 species Thermoplasma volcanium family 58 2 0 90142 genus 58 74968 2 0 Ferroplasma acidarmanus 97393 1 0 37 species 0 1 74969 21 species Ferroplasma acidiphilum 1235850 0 5 98 order 24 family 0 2 2517203 genus 24 1291539 0 2 1 Candidatus Methanomethylophilus 1 Candidatus Methanomethylophilus alvus 23 species 1291540 1 0 Methanomassiliicoccaceae 1 74 family 1577788 3 0 1 0 1 1607807 genus 31 1 0 1577791 31 species Candidatus Methanoplasma termitum 42 genus 0 1 1080709 Candidatus Methanomassiliicoccus intestinalis 1406512 0 1 species 42 1 0 1234666 58 no rank species 58 1 0 1495144 methanogenic archaeon ISO4-H5 0 9 183980 205 class 2231 9 0 order 205 family 205 9 0 2232 5 0 2233 genus 125 1 1 Archaeoglobus Archaeoglobus profundus 0 1 84156 species 17 0 1 1316941 30 species Archaeoglobus sulfaticallidus 46 species 1 0 58290 Archaeoglobus veneficus species 31 2234 0 1 Archaeoglobus fulgidus Geoglobus 1 genus 64 190818 0 3 1 Geoglobus acetivorans species 34 1 0 565033 Geoglobus ahangari 113653 0 1 species 29 16 genus 54260 1 0 species 16 54261 0 1 Ferroglobus placidus clade 2159 0 33 2283794 Methanobacteria 1 class 1266 183925 21 0 1 0 20 2158 1265 order 1197 family 2159 19 0 1 0 7 2172 756 genus 1 Methanobrevibacter 2173 0 1 254 species Methanobrevibacter smithii species 131 294671 1 0 Methanobrevibacter olleyae 83816 1 0 119 species Methanobrevibacter ruminantium 2638681 0 2 no rank 142 species 65 1 0 224719 Methanobrevibacter sp. AbM4 Methanobrevibacter sp. YE315 77 species 1609968 1 0 Methanobrevibacter millerae 230361 1 0 species 109 57 genus 0 4 145260 Methanothermobacter marburgensis species 3 0 1 145263 no rank 20 1 0 2631116 species 20 866790 0 1 Methanothermobacter sp. CaT2 Methanothermobacter thermautotrophicus 0 1 145262 18 species species 16 1 0 145261 Methanothermobacter wolfeii 2160 0 7 genus 268 Methanobacterium lacus species 63 877455 0 1 2627676 2 0 no rank 41 Methanobacterium sp. MB1 1379702 0 1 species 22 1 0 1911685 species 19 Methanobacterium sp. MZ-A1 Methanobacterium paludis species 66 868131 1 0 Methanobacterium formicicum 32 species 0 1 2162 species 33 118062 0 1 Methanobacterium congolense Methanobacterium subterraneum 33 species 1 0 59277 genus 116 1 0 2316 2317 0 1 116 species Methanosphaera stadtmanae 0 1 2178 68 family 2179 0 1 genus 68 0 1 2180 species 68 Methanothermus fervidus 12 0 183939 class 893 2182 12 0 order 893 family 512 0 5 2183 155862 0 1 genus 52 1 0 155863 species 52 Methanothermococcus okinawensis 0 4 2184 genus 460 294 species 0 1 39152 Methanococcus maripaludis Methanococcus aeolicus 0 1 42879 species 65 Methanococcus vannielii 2187 0 1 44 species Methanococcus voltae 1 0 2188 57 species family 381 7 0 196117 1 0 196119 genus 67 Methanotorris igneus 67 species 2189 1 0 196118 0 6 314 genus Methanocaldococcus jannaschii 2190 1 0 species 49 73913 0 1 64 species Methanocaldococcus vulcanius Methanocaldococcus fervens species 14 83171 1 0 Methanocaldococcus bathoardescens 68 species 0 1 1301915 no rank 49 2641196 0 1 644281 1 0 49 species Methanocaldococcus sp. FS406-22 Methanocaldococcus infernus 70 species 67760 0 1 1 733 class 39 0 183968 Thermococci 1 Thermococcales 1 732 order 2258 38 0 3 0 37 2259 729 family genus 106 7 0 2260 Pyrococcus abyssi 29292 1 0 9 species 0 1 1609559 17 species Pyrococcus kukulkanii Pyrococcus yayanosii 0 1 1008460 species 10 24 no rank 2629106 2 0 species 12 1183377 1 0 Pyrococcus sp. ST04 12 species 342949 1 0 Pyrococcus sp. NA2 0 1 2261 19 species Pyrococcus furiosus 27 species 53953 0 1 Pyrococcus horikoshii 1 Thermococcus 3 2263 0 29 genus 603 47 species 55802 0 1 Thermococcus barophilus 54077 1 0 species 23 Thermococcus barossii species 21 0 1 163003 Thermococcus cleftensis 1712654 1 0 12 species Thermococcus piezophilus Thermococcus celer 2264 1 0 15 species 342948 0 1 species 16 Thermococcus onnurineus 51 species 2265 1 0 Thermococcus litoralis 6 0 2627626 no rank 122 0 1 246969 species 29 Thermococcus sp. AM4 2016361 1 0 11 species Thermococcus sp. EXT12c 16 species 2008440 0 1 Thermococcus sp. 5-4 13 species 0 1 122420 Thermococcus sp. P6 Thermococcus sp. 4557 1042877 1 0 24 species 1674923 0 1 species 29 Thermococcus sp. 2319x1 species 14 0 1 71998 Thermococcus pacificus Thermococcus thioreducens 277988 1 0 species 13 311400 1 0 species 15 Thermococcus kodakarensis Thermococcus gammatolerans 16 species 1 0 187878 0 1 110164 22 species Thermococcus guaymasensis species 24 71997 0 1 Thermococcus gorgonarius Thermococcus sibiricus 1 0 172049 23 species Thermococcus nautili 195522 1 0 species 19 species 19 53952 0 1 Thermococcus peptonophilus species 23 1 0 1505907 Thermococcus eurythermalis Thermococcus chitonophagus 1 0 54262 species 15 Thermococcus paralvinellae 582419 1 0 29 species Thermococcus radiotolerans 187880 1 0 21 species 49899 1 0 13 species Thermococcus profundus 27 species 1 0 72803 Thermococcus siculi 83867 0 1 genus 20 Palaeococcus pacificus 20 species 971279 0 1 Bacteria 1 8 superkingdom 5136058 2 0 4061 0 15 57723 1151 phylum class 176 1562566 0 1 genus 176 1 0 458032 176 species 458033 0 1 Chloracidobacterium thermophilum 204432 0 14 975 class 4 1 Acidobacteriia 1 Acidobacteriales 204433 10 0 811 order 5 1 Acidobacteriaceae 7 204434 9 0 806 family 2 3 0 940557 genus 253 1 Granulicella Granulicella tundricola 118 species 940615 0 1 Granulicella mallensis 940614 1 0 133 species 109 genus 1 0 33973 Acidobacterium capsulatum species 109 1 0 33075 1 Terriglobus 2 392733 3 0 genus 254 1 0 870903 129 species Terriglobus saanensis Terriglobus roseus 123 species 392734 1 0 183 genus 658061 1 0 658062 0 1 species 183 Candidatus Koribacter versatilis Solibacterales 1 order 160 332160 0 3 2 1 Solibacteraceae 7 2 0 332161 family 158 332162 0 1 genus 151 species 151 0 1 332163 Candidatus Solibacter usitatus 1783257 72 0 4781 clade phylum 1721 74201 0 21 0 2 417295 275 no rank Verrucomicrobia bacterium IMCC26134 108 species 1637999 1 0 Verrucomicrobia bacterium 2026799 0 1 167 species 5 0 203494 729 class 729 order 0 5 48461 1 Verrucomicrobiales 1 1 Akkermansiaceae 1647988 0 4 family 728 1 2 genus 727 239934 3 0 Akkermansia 1 Akkermansia muciniphila 518 species 0 1 239935 1679444 1 0 species 207 Akkermansia glycaniphila 555 class 0 10 414999 10 Opitutae 1 4 order 469 415000 7 0 Opitutales 1 Opitutaceae 1 465 family 0 6 134623 5 278955 0 1 no rank 191 Opitutaceae bacterium TAV5 191 species 0 1 794903 1 178440 2 0 107 genus 1 Opitutus Opitutus terrae 106 species 107709 0 1 1961799 0 2 162 genus 4 1 Lacunisphaera Lacunisphaera limnophila species 158 1838286 1 0 76 order 0 2 415001 415002 0 2 family 76 1 Coraliomargarita 0 2 442430 genus 76 2 395922 1 0 species 74 Coraliomargarita akajimensis 144 class 1955630 0 3 Methylacidiphilales 1 5 order 144 717963 3 0 717964 0 2 139 family 2 0 511745 139 genus 511746 0 1 72 species Methylacidiphilum infernorum 1 0 591154 species 67 Methylacidiphilum fumariolicum 0 1 134549 18 class 1 0 134550 18 genus no rank 18 2648876 1 0 species 18 1704307 1 0 Candidatus Xiphinematobacter sp. Idaho Grape 3 0 134625 phylum 111 Kiritimatiellae 1 1 class 111 1921781 0 3 2 0 1921782 order 110 family 110 1921783 2 0 1 Kiritimatiella 2 0 1921784 110 genus 5 0 1 1307763 species 105 Kiritimatiella glycovorans 29 0 203682 phylum 1863 2 666505 0 7 308 class 1 Phycisphaerae 4 0 666506 124 order 4 1 Phycisphaerales 666507 3 0 120 family 1 1 Phycisphaeraceae 2 0 666508 genus 119 1 1 Phycisphaera 118 species 0 1 547188 Phycisphaera mikurensis order 182 0 2 2483366 182 family 2 0 2483367 182 genus 2483368 0 2 Phycisphaerae bacterium L21-RPul-D3 70 species 1940790 1 0 1941349 1 0 112 species Phycisphaerae bacterium ST-PulAB-D4 237 class 2517206 2 0 1 Candidatus Brocadiales 4 2 0 1127829 237 order 233 family 1 0 1127830 0 1 380738 233 genus Candidatus Kuenenia stuttgartiensis 233 species 1 0 174633 Planctomycetia 1 7 class 1318 203683 0 20 2691354 0 3 order 271 80 family 2691358 0 1 1676125 1 0 genus 80 80 species 1331910 0 1 Thermogutta terrifontis 191 family 2 0 2691357 genus 116 1 0 123 125 1 0 116 species Pirellula staleyi 75 genus 0 1 265488 species 75 0 1 265606 Rhodopirellula baltica order 127 2691355 2 0 1 1914233 0 2 family 127 1 Gemmataceae 126 genus 0 1 113 126 no rank 0 1 2622970 Gemmata sp. SH-PL17 1 0 1630693 126 species 2691356 5 0 330 order 2 330 family 0 5 1763524 Isosphaeraceae 1 127 1 0 genus 69 128 0 1 species 69 Isosphaera pallida 1 0 466152 genus 94 466153 1 0 species 94 Singulisphaera acidiphila 2 1763521 2 0 genus 165 1 Paludisphaera Paludisphaera borealis 163 species 1 0 1387353 1 Planctomycetales 9 0 112 583 order 10 1 Planctomycetaceae 5 8 0 126 family 573 Fuerstia 1 1 genus 130 2 0 1936111 Fuerstia marisgermanicae 1 0 1891926 species 129 Planctomyces 1 1 genus 243 3 0 118 0 2 2648843 no rank 242 Planctomyces sp. SH-PL62 1 0 1636152 132 species species 110 1632864 1 0 Planctomyces sp. SH-PL14 1649480 1 0 85 genus 85 species 0 1 120 Planctopirus limnophila genus 110 1 0 1649490 Rubinisphaera brasiliensis species 110 1 0 119 17 0 204428 509 phylum 1 class 509 204429 17 0 Chlamydiia 1 1 Chlamydiales 0 12 51291 order 331 1 809 0 11 330 family 0 11 1113537 330 no rank 11 0 810 330 genus Chlamydia caviae species 11 83557 1 0 22 species 0 1 1457141 Chlamydia avium Chlamydia trachomatis 813 1 0 species 28 0 1 1457153 41 species Chlamydia gallinacea 83559 1 0 22 species Chlamydia suis 83554 1 0 species 52 Chlamydia psittaci Chlamydia muridarum 59 species 83560 0 1 Chlamydia felis species 29 83556 1 0 83555 0 1 species 19 Chlamydia abortus 21 species 0 1 85991 Chlamydia pecorum Chlamydia pneumoniae 26 species 0 1 83558 1963360 4 0 177 order family 41 92714 1 0 71666 0 1 genus 41 species 41 71667 0 1 Waddlia chondrophila 1 0 92712 21 family genus 21 34093 0 1 species 21 83561 0 1 Simkania negevensis 115 family 92713 2 0 83551 1 0 genus 56 species 56 1 0 83552 Parachlamydia acanthamoebae 59 genus 282132 1 0 59 species 389348 1 0 Candidatus Protochlamydia naegleriophila 577 phylum 256845 2 0 1313211 0 2 class 577 Victivallales 1 178 577 order 278082 2 0 399 no rank 0 1 1674876 species 399 0 1 2094242 Victivallales bacterium CCUG 44730 200918 37 0 phylum 2779 Thermotogae 1 class 2779 0 37 188708 2 order 1924 2419 0 25 1 family 857 8 0 1643950 Fervidobacteriaceae 1 genus 519 4 0 2420 species 101 46541 1 0 Thermosipho melanesiensis 276 no rank 2 0 2676525 Thermosipho sp. 1070 0 1 1437364 139 species Thermosipho sp. 1063 1 0 1462747 137 species 142 species 1 0 2421 Thermosipho africanus genus 337 2422 3 0 Fervidobacterium pennivorans 1 0 93466 130 species Fervidobacterium islandicum 103 species 0 1 2423 2424 0 1 104 species Fervidobacterium nodosum 1 1067 family 188709 17 0 Thermotogaceae 1 Thermotoga 1 600 genus 0 11 2335 4 0 1 2337 91 species Thermotoga neapolitana 1 0 93929 species 48 Thermotoga petrophila 1 0 93930 50 species Thermotoga naphthophila 4 0 2631113 273 no rank species 55 1 0 1157947 Thermotoga sp. Cell2 89 species 126738 0 1 Thermotoga sp. RQ7 Thermotoga sp. 2812B 1 0 1157948 66 species Thermotoga sp. RQ2 species 63 0 1 126740 species 66 1 0 1508420 Thermotoga profunda Thermotoga caldifontis 0 1 1508419 species 15 Thermotoga maritima 53 species 1 0 2336 1 Pseudothermotoga 2 0 5 1643951 466 genus Pseudothermotoga thermarum 119394 0 1 80 species 0 1 38322 species 161 Pseudothermotoga elfii Pseudothermotoga hypogea 0 1 57487 species 55 species 168 0 1 177758 Pseudothermotoga lettingae 207 order 4 0 1643946 family 207 4 0 1643948 5 Kosmotogaceae 1 651456 0 2 142 genus Kosmotoga pacifica 1 0 1330330 species 71 651457 1 0 71 species Kosmotoga olearia genus 60 1184396 0 1 Mesotoga prima species 60 1184387 0 1 646 order 1643947 0 7 2 Petrotogales 1 family 644 0 6 1643949 160798 0 3 441 genus 1 1 Marinitoga 2640159 0 1 no rank 226 226 species 1 0 1545835 Marinitoga sp. 1137 214 species 1 0 149715 Marinitoga piezophila 1 Petrotoga 1 0 2 28236 119 genus Petrotoga mobilis 0 1 69499 species 118 1511648 1 0 84 genus Defluviitoga tunisiensis 0 1 1006576 84 species 0 50 203691 6867 phylum 10 50 0 203692 class 6867 1 Spirochaetia Spirochaetales 1 128 order 4742 136 0 37 743 family 1643685 16 0 1 Borreliella 9 64895 0 8 376 genus 1 0 62088 42 species Borreliella valaisiana Borreliella bavariensis 664662 1 0 62 species Borreliella bissettii species 38 1 0 64897 53 species 1 0 29518 Borreliella afzelii Borreliella garinii species 90 29519 0 1 139 1 0 species 57 Borreliella burgdorferi Borrelia mayonii 1 0 1674146 25 species 138 8 0 367 genus 2 1 Borrelia Borrelia parkeri 141 0 1 species 86 Borrelia anserina 1 0 143 species 47 47466 1 0 species 65 Borrelia miyamotoi Borrelia turicatae species 70 142 1 0 species 26 44449 1 0 Borrelia recurrentis Borrelia hermsii 140 1 0 species 41 Borrelia duttonii 40834 0 1 30 species Spirochaetaceae 1 3871 family 137 0 20 16 45 12 0 157 genus 2670 1 Treponema 53435 1 0 species 8 Treponema paraluiscuniculi 1 0 81028 species 244 Treponema brennaborense species 608 1 0 167 Treponema succinifaciens Treponema putidum 0 1 221027 451 species Treponema azotonutricium species 180 150829 0 1 1 0 2638727 no rank 354 Treponema sp. OMZ 838 1 0 1539298 354 species Treponema pallidum 1 0 160 species 8 Treponema caldarium 215591 1 0 142 species 156 species 0 1 88058 Treponema primitia species 188 409322 0 1 Treponema pedis Treponema denticola 158 1 0 species 286 0 3 399320 478 genus Sphaerochaeta globosa 196 species 1131703 1 0 146 species 273376 1 0 Sphaerochaeta coccoides Sphaerochaeta pleomorpha 136 species 0 1 1131707 genus 162 1 0 1911556 162 species 55206 1 0 Sediminispirochaeta smaragdinae 0 2 146 321 genus Spirochaeta africana 1 0 46355 178 species Spirochaeta thermophila 154 0 1 species 143 1 0 1616789 genus 224 224 species 1307761 0 1 Salinispira pacifica 0 6 1643686 1402 order 0 6 143786 family 1402 7 1 Brachyspiraceae Brachyspira 1 28 1395 genus 29521 0 5 1 0 84377 species 428 Brachyspira intermedia Brachyspira pilosicoli 1 0 52584 370 species Brachyspira hyodysenteriae 0 1 159 385 species 184 species 0 1 84378 Brachyspira murdochii 1643688 0 6 order 713 713 family 0 6 170 635 genus 5 0 171 172 0 1 88 species Leptospira biflexa Leptospira interrogans 201 species 173 0 1 Leptospira santarosai species 119 28183 0 1 116 species 1 0 174 Leptospira borgpetersenii species 111 0 1 28452 Leptospira alstonii genus 78 0 1 338321 Turneriella parva 78 species 1 0 29510 clade 2544653 1580 0 1783272 2165 phylum 0 34 200795 124 class 475962 0 2 124 order 2 0 475963 family 124 2 0 475964 Caldilinea 1 124 genus 233191 2 0 1 Caldilinea aerophila 123 species 1 0 133453 5 0 8 189775 157 class 1 Thermomicrobia 1 Thermomicrobiales 3 189776 3 0 order 66 1 63 family 189777 2 0 Thermomicrobiaceae 1 62 genus 499 0 1 Thermomicrobium roseum 1 0 500 62 species 4 0 85000 subclass 86 1 Sphaerobacterales 85001 4 0 86 order 2 0 3 255728 suborder 84 1 84 family 85002 0 3 Sphaerobacteraceae 1 Sphaerobacter 1 genus 83 2 0 2056 1 Sphaerobacter thermophilus species 82 0 1 2057 1 Anaerolineae 292625 0 6 class 383 1 292629 5 0 382 order 1 1 Anaerolineales 1 Anaerolineaceae 0 4 292628 381 family 6 genus 136 1 0 233189 Anaerolinea thermophila 1 0 167964 species 136 1324991 0 1 172 no rank species 172 1 0 1889813 Anaerolineaceae bacterium oral taxon 439 genus 67 0 1 2019482 Brevefilum fermentans 1 0 1986204 67 species 1 Chloroflexia 2 32061 8 0 523 class 0 7 32064 order 521 239 suborder 1508594 4 0 family 239 1106 0 4 2 4 0 1107 239 genus 1 Chloroflexus 152260 0 1 73 species Chloroflexus aggregans 82 species 164 2 0 1108 Chloroflexus aurantiacus 1 Chloroflexus sp. Y-400-fl strain 82 1 0 480224 3 0 1508595 suborder 282 Roseiflexaceae 1 282 family 3 0 1508635 2 280 genus 120961 0 2 Roseiflexus castenholzii 120962 0 1 143 species 1 0 2609473 137 no rank Roseiflexus sp. RS-1 357808 1 0 137 species 1 Ardenticatenia 0 4 1382928 class 255 9 Ardenticatenales 1 6 246 order 1382929 3 0 240 family 1382930 2 0 Candidatus Promineofilum 1 1 240 genus 1988031 0 2 Candidatus Promineofilum breve 0 1 1806508 239 species 1 Dehalococcoidia 301297 6 0 723 class 3 order 552 0 3 1202465 1202464 3 0 552 family 1 1 Dehalococcoidaceae genus 551 61434 2 0 no rank 127 237581 1 0 1522671 1 0 127 species Dehalococcoides sp. UCH007 Dehalococcoides mccartyi species 424 1 0 61435 670486 0 2 genus 168 552810 1 0 80 species Dehalogenimonas lykanthroporepellens species 88 1839801 1 0 Dehalogenimonas formicexedens phylum 2750 34 0 1297 1 Deinococci 34 0 188787 2750 class 20 34 15 0 118964 order 1807 1 Deinococcales Deinococcaceae 1 family 1773 14 0 183710 13 1298 13 0 1760 genus 16 1 Deinococcus Deinococcus deserti species 96 1 0 310783 species 102 0 1 1299 Deinococcus radiodurans 0 1 1182568 150 species Deinococcus puniceus Deinococcus maricopensis 309887 1 0 129 species 1 0 2623546 no rank 133 species 133 2080419 1 0 Deinococcus sp. NW-56 0 1 1182571 species 162 Deinococcus swuensis 0 1 1768108 species 150 Deinococcus actinosclerus 432329 1 0 species 138 Deinococcus peraridilitoris Deinococcus geothermalis 129 species 0 1 68909 Deinococcus gobiensis species 193 502394 0 1 Deinococcus proteolyticus 55148 0 1 193 species Deinococcus soli Cha et al. 2016 169 species 1309411 0 1 2 0 2762275 order 95 332247 2 0 95 family Truepera 1 2 genus 95 332248 2 0 Truepera radiovictrix 332249 0 1 93 species 8 68933 16 0 828 order 1 Thermales 11 0 15 188786 820 family 1 Thermaceae genus 66 186191 0 1 species 66 186192 1 0 Marinithermus hydrothermalis Oceanithermus 1 134 genus 208447 2 0 10 Oceanithermus profundus 0 1 187137 species 124 1 Meiothermus 3 0 65551 172 genus 1 species 104 277 1 0 Meiothermus ruber Meiothermus silvanus 52022 0 1 species 67 437 genus 270 8 0 18 Thermus 1 274 0 1 121 species Thermus thermophilus Thermus aquaticus 271 0 1 species 70 Thermus oshimai 49 species 56957 1 0 species 50 456163 1 0 Thermus parvatiensis Thermus scotoductus 37636 1 0 44 species no rank 53 2619321 0 1 Thermus sp. CCB_US3_UF1 1 0 1111069 53 species species 32 0 1 56956 Thermus brockianus 100 0 544448 phylum 8702 0 1 2799557 no rank 250 0 1 1912503 genus 250 no rank 250 0 1 2624196 species 250 0 1 1541959 Candidatus Izimaplasma sp. HR1 2 0 713063 no rank 604 Tenericutes bacterium MZ-XQ 1911683 0 1 326 species Tenericutes bacterium MO-XQ 0 1 1911684 278 species 31969 97 0 class 7848 7 1 Mollicutes Mycoplasmatales 1 2823 order 2085 0 44 2 43 0 2092 family 2821 10 1 Mycoplasmataceae genus 889 0 12 2767358 species 50 2112 0 1 Mycoplasma bovigenitalium Mycoplasma agalactiae 2110 1 0 50 species Mycoplasma synoviae species 55 0 1 2109 species 182 2115 1 0 Mycoplasma fermentans Mycoplasma canis 114 species 0 1 29555 Mycoplasma bovirhinis species 48 0 1 29553 0 1 28903 84 species Mycoplasma bovis Mycoplasma arginini species 70 1 0 2094 Mycoplasma californicum species 51 2113 1 0 Mycoplasma pulmonis 1 0 2107 60 species Mycoplasma cynos 0 1 171284 67 species Mycoplasma pullorum 1 0 48003 58 species Ureaplasma 1 169 genus 2129 3 0 1 98 species 1 0 134821 Ureaplasma parvum species 70 2130 1 0 Ureaplasma urealyticum 1 Mycoplasma 11 2093 27 0 1753 genus Mycoplasma mobile 0 1 2118 species 44 Mycoplasma wenyonii 0 1 65123 species 6 Mycoplasma genitalium 0 1 2097 species 5 species 36 1 0 2111 Mycoplasma arthritidis Mycoplasma bovoculi species 54 0 1 45362 1 0 2123 74 species Mycoplasma putrefaciens species 43 2100 1 0 Mycoplasma hyorhinis Mycoplasma gallisepticum species 34 2096 1 0 3 0 656088 species group 419 1 0 2105 99 species Mycoplasma leachii Mycoplasma capricolum 92 species 2095 0 1 228 species 2102 1 0 Mycoplasma mycoides 13 species 171632 0 1 Mycoplasma ovis Mycoplasma flocculare 1 0 2128 50 species 0 1 51365 species 186 Mycoplasma yeatsii Mycoplasma crocodyli 50052 0 1 64 species 2683645 0 1 104 no rank 104 species 1 0 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) Mycoplasma suis 0 1 57372 species 45 Mycoplasma pneumoniae 1 0 2104 species 9 984991 1 0 21 species Mycoplasma parvum Mycoplasma hyopneumoniae 1 0 2099 species 61 79 species 29554 1 0 Mycoplasma canadense Mycoplasma haemofelis species 29 29501 1 0 2098 0 1 185 species Mycoplasma hominis 30 species 1 0 86660 Mycoplasma dispar species 130 1 0 28227 Mycoplasma penetrans Mycoplasma haemocanis 136241 0 1 21 species 3 order 3648 186328 39 0 Entomoplasmatales 1 2 14 0 33925 1270 family 1 Entomoplasmataceae genus 922 46239 8 0 21 Mesoplasma 1 0 1 138853 species 166 Mesoplasma lactucae Mesoplasma entomophilum 103 species 1 0 2149 Mesoplasma florum 0 1 2151 species 197 Mesoplasma coleopterae species 82 324078 0 1 225999 0 1 128 species Mesoplasma syrphidae Mesoplasma tabanidae 117 species 0 1 219745 0 1 216427 species 108 Mesoplasma chauliocola 1 Entomoplasma 46238 0 5 genus 346 1 Entomoplasma freundtii 0 1 74700 68 species 89 species 1 0 214888 Entomoplasma luminosum 0 1 215578 species 81 Entomoplasma somnilux species 107 81459 1 0 Entomoplasma melaleucae 1 Spiroplasmataceae 7 2131 24 0 family 2375 Spiroplasma 1 2368 genus 2132 23 0 39 Spiroplasma citri 2133 1 0 species 195 1114980 1 0 71 species Spiroplasma atrichopogonis Spiroplasma helicoides species 97 216938 0 1 216942 0 1 138 species Spiroplasma litorale 1 0 216933 species 143 Spiroplasma chrysopicola 115 species 216937 0 1 Spiroplasma floricola species 110 0 1 2145 Spiroplasma taiwanense Spiroplasma kunkelii 159 species 0 1 47834 216936 1 0 species 142 Spiroplasma diminutum Spiroplasma corruscae species 68 0 1 216934 Spiroplasma syrphidicola 53 species 0 1 216945 2 0 2637901 154 no rank Spiroplasma sp. NBRC 100390 1914410 1 0 77 species 0 1 1898044 species 77 Spiroplasma sp. TU-14 177 species 216935 0 1 Spiroplasma culicicola 2137 0 1 49 species Spiroplasma apis species 110 315358 1 0 Spiroplasma eriocheiris 216944 1 0 species 70 Spiroplasma sabaudiense 1 0 2136 48 species Spiroplasma monobiae species 67 2144 1 0 Spiroplasma mirum Spiroplasma clarkii species 97 2139 0 1 216946 1 0 151 species Spiroplasma turonicum 0 1 362837 species 115 Spiroplasma cantharicola 186329 13 0 order 1370 5 1 Acholeplasmatales 9 2146 0 12 1365 family 1 Acholeplasmataceae 1 Candidatus Phytoplasma 6 0 33926 270 genus 7 85632 0 1 50 species group 59748 0 1 50 species Candidatus Phytoplasma australiense species group 79 85630 1 0 1 0 37692 species 79 Candidatus Phytoplasma mali 85620 0 3 134 species group species 59 202462 1 0 Maize bushy stunt phytoplasma Aster yellows witches'-broom phytoplasma 229545 0 1 species 29 46 species 1 0 100379 Onion yellows phytoplasma 1 Acholeplasma 18 2147 5 0 genus 1086 38986 0 1 377 species Acholeplasma palmae Acholeplasma brassicae 259 species 1 0 61635 species 209 35623 1 0 Acholeplasma oculi 223 species 1 0 2148 Acholeplasma laidlawii 1 0 1859062 90 no rank genus 90 0 1 262406 Thermobaculum terrenum species 90 1 0 166501 phylum 85 67819 3 0 class 85 1663419 3 0 order 85 0 3 1663425 85 family 1663426 0 3 1 Fimbriimonadaceae 1 84 genus 1005038 0 2 1 Fimbriimonas 1 Fimbriimonas ginsengisoli species 83 1 0 1005039 0 119 1798711 12247 clade 0 119 1117 12247 phylum 1 1 Cyanobacteria 1 Gloeobacteria 2 6 0 307596 266 class 1 Gloeobacterales 6 0 5 307595 264 order 258 family 0 4 1890422 1 Gloeobacteraceae 1 1 Gloeobacter 5 3 0 33071 257 genus Gloeobacter kilaueensis 113 species 1416614 0 1 139 species 33072 0 1 Gloeobacter violaceus 3133 subclass 0 26 1301283 1 Oscillatoriales 1150 0 9 1297 order 2 1 0 1892251 112 family 112 genus 63132 0 1 0 1 2648775 no rank 112 112 species 1 0 1173025 Geitlerinema sp. PCC 7407 1 0 1892249 78 family 43988 0 1 genus 78 no rank 78 0 1 2649277 Cyanothece sp. PCC 7425 1 0 395961 species 78 2 0 1892252 251 family genus 76 1 0 44471 0 1 2642155 no rank 76 1173027 0 1 76 species Microcoleus sp. PCC 7113 genus 175 1205 1 0 Trichodesmium erythraeum 175 species 0 1 1206 1892254 3 0 565 family genus 415 0 2 1158 species 113 1 0 118323 Oscillatoria acuminata 1 0 482564 species 302 Oscillatoria nigro-viridis genus 150 1 0 1155738 150 species 1155739 0 1 Moorea producens 1 0 1892255 289 family 289 genus 241421 0 1 1 0 241425 289 species Crinalium epipsammum 1118 0 17 1836 order Chroococcaceae 1 1 family 554 1890464 0 6 5 344 genus 0 3 669357 Geminocystis 1 2625037 0 2 no rank 339 Geminocystis sp. NIES-3708 species 168 1615909 1 0 171 species 0 1 1617448 Geminocystis sp. NIES-3709 1 0 102231 87 genus 0 1 2623012 no rank 87 species 87 1173026 0 1 Gloeocapsa sp. PCC 7428 122 genus 0 1 268175 122 no rank 2648896 0 1 Chondrocystis sp. NIES-4102 122 species 0 1 2005460 214 family 0 2 1890452 1 Cyanobacterium 5 102234 2 0 genus 214 209 species 1 0 379064 Cyanobacterium aponinum 248 family 2 0 1890449 genus 248 2 0 1125 Microcystis aeruginosa 1126 0 1 151 species 97 no rank 2643300 1 0 species 97 0 1 1967666 Microcystis sp. MC19 7 0 1890450 820 family 296 genus 28070 2 0 0 1 2546359 species 145 145 strain 1 0 497965 Cyanothece sp. PCC 7822 151 species 0 1 2546356 65393 0 1 151 strain Cyanothece sp. PCC 7424 2546365 0 2 genus 216 216 species 2546366 2 0 117 strain 1 0 41431 Cyanothece sp. PCC 8801 395962 0 1 strain 99 Cyanothece sp. PCC 8802 263510 1 0 98 genus 2546360 1 0 98 species 98 strain 1 0 43989 Cyanothece sp. ATCC 51142 0 1 1453359 67 genus Candidatus Atelocyanobacterium thalassa species 67 713887 0 1 143 no rank 1 0 92682 genus 143 0 1 76023 no rank 143 0 1 2632878 Halothece sp. PCC 7418 1 0 65093 143 species 4 0 52604 order 494 Hyellaceae 1 142 family 1890500 0 2 1 genus 141 44474 1 0 54308 1 0 species 141 Pleurocapsa minor 352 family 1890498 2 0 genus 352 102115 0 2 156 no rank 1 0 2642663 Stanieria sp. NIES-3757 species 156 1 0 1807358 196 species 0 1 102116 Stanieria cyanosphaera 0 30 1161 order 3928 2 1 Nostocales 1219117 0 1 138 no rank Nostocales cyanobacterium HT-58-2 0 1 1940762 species 138 1 Nostocaceae 3 0 18 1162 family 2231 1 Trichormus 0 3 264688 genus 311 1 189 species 1 0 264691 Trichormus variabilis 1164 1 0 121 species Trichormus azollae 1 556 genus 1163 0 4 Anabaena 1 2 0 2619674 324 no rank 1647413 1 0 species 167 Anabaena sp. WA102 Anabaena sp. 90 1 0 46234 species 157 1165 1 0 species 231 Anabaena cylindrica Nostoc 1 1361 genus 0 10 1177 3 no rank 993 0 7 2593658 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 168 0 1 1261031 Nostoc sp. CENA543 1 0 1869241 species 121 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 1 0 105 species Nostoc sp. PCC 7524 species 152 0 1 28072 1 0 317936 species 122 Nostoc sp. PCC 7107 1751286 0 1 149 species Nostoc sp. NIES-3756 Nostoc sp. PCC 7120 176 species 103690 1 0 Nostoc punctiforme 156 species 1 0 272131 Nostoc flagelliforme 1306274 1 0 species 209 2661849 7 0 family 1170 1186 7 0 1170 genus 2619626 6 0 992 no rank Calothrix sp. NIES-4071 304 species 2005469 1 0 99598 0 1 species 177 Calothrix sp. PCC 7507 Calothrix sp. NIES-3974 2005462 0 1 species 105 Calothrix sp. 336/3 species 83 1 0 1337936 species 159 1954171 0 1 Calothrix sp. NIES-2098 Calothrix sp. NIES-4101 2005461 1 0 species 164 species 178 1 0 32054 Calothrix parietina 1 1185 2 0 family 280 1 Rivulariaceae genus 279 373984 0 1 279 no rank 0 1 2676603 1 0 373994 279 species Rivularia sp. PCC 7116 107 family 1892263 0 1 107 genus 1190 1 0 0 1 494603 107 no rank 107 species 0 1 1752063 Fischerella sp. NIES-3754 1 0 1890505 order 105 family 105 0 1 1890528 54298 0 1 genus 105 105 species 54299 1 0 Chroococcidiopsis thermalis no rank 85 1983111 1 0 cyanobacterium endosymbiont of Epithemia turgida 0 1 718217 85 species order 4235 50 0 1890424 37 Synechococcales 1 family 124 0 1 1890429 124 genus 155977 1 0 Acaryochloris marina 155978 0 1 124 species 1890436 0 1 family 53 53 genus 0 1 1152 1 0 2593292 53 no rank 53 species 0 1 82654 Pseudanabaena sp. PCC 7367 0 4 1213 family 704 1 1 Prochloraceae 3 0 1218 genus 703 Prochlorococcus marinus 1219 0 1 species 570 no rank 133 2627481 0 2 1 0 1501269 species 87 Prochlorococcus sp. MIT 0801 Prochlorococcus sp. MIT 0604 1501268 1 0 46 species 2 519 family 6 0 1890438 Leptolyngbyaceae 1 Leptolyngbya 1 1 517 genus 47251 5 0 Leptolyngbya boryana species 100 1 0 1184 3 0 2650499 416 no rank species 188 1080068 0 1 Leptolyngbya sp. O-77 species 111 111781 0 1 Leptolyngbya sp. PCC 7376 species 117 1752064 1 0 Leptolyngbya sp. NIES-3755 101 family 2303730 1 0 170610 0 1 genus 101 Halomicronema hongdechloris 1209493 0 1 species 101 family 353 1890428 4 0 Synechocystis 1 353 genus 1142 4 0 1 352 no rank 2640012 3 0 Synechocystis sp. PCC 6803 0 1 1148 135 species 1147 0 1 species 82 Synechocystis sp. PCC 6714 2116702 0 1 species 135 Synechocystis sp. IPPAS B-1465 family 2344 1890426 0 32 4 Synechococcaceae 1 Cyanobium 1 2 genus 308 0 3 167375 species 132 59930 1 0 Cyanobium gracile 174 no rank 1 0 2627006 species 174 0 1 1851505 Cyanobium sp. NIES-981 genus 105 0 1 13034 Dactylococcopsis salina 105 species 1 0 292566 1 Synechococcus 1129 26 0 genus 1875 27 33070 0 1 45 species Synechococcus lividus Synechococcus elongatus 32046 0 1 species 78 1725 no rank 2626047 0 23 Synechococcus sp. SynAce01 90 species 1916956 1 0 Synechococcus sp. PCC 8807 52 species 195248 0 1 Synechococcus sp. WH 7803 species 64 32051 1 0 Synechococcus sp. KORDI-49 146 species 585423 1 0 Synechococcus sp. PCC 7002 63 species 32049 1 0 195498 0 1 species 48 Synechococcus sp. PCC 7117 83 species 84588 1 0 Synechococcus sp. WH 8102 Synechococcus sp. RCC307 70 species 316278 1 0 78 species 374981 0 1 Synechococcus sp. PCC 7003 110662 1 0 species 94 Synechococcus sp. CC9605 Synechococcus sp. NIES-970 1827144 0 1 species 58 species 45 0 1 1280380 Synechococcus sp. KORDI-100 species 78 0 1 1350461 Synechococcus sp. UTEX 2973 Synechococcus sp. PCC 73109 374982 0 1 species 38 Synechococcus sp. PCC 6312 species 30 1 0 195253 Synechococcus sp. CC9902 316279 0 1 36 species Synechococcus sp. JA-3-3Ab 1 0 321327 species 162 Synechococcus sp. KORDI-52 1 0 585425 species 67 117 species 1173263 0 1 Synechococcus sp. PCC 7502 0 1 64471 species 50 Synechococcus sp. CC9311 species 112 1 0 321332 Synechococcus sp. JA-2-3B'a(2-13) 81 species 0 1 29410 Synechococcus sp. WH 8103 Synechococcus sp. WH 8109 166314 1 0 63 species 1 0 146785 genus 52 species 52 146786 1 0 Thermosynechococcus elongatus Actinobacteria 1 phylum 428485 606 0 201174 10 Coriobacteriia 1 102 17382 class 84998 29 0 1 Coriobacteriales 12 0 84999 order 10063 70 1643824 0 6 1394 family 18 1 Atopobiaceae 5 916 genus 133925 0 4 Olsenella 1 2638792 0 1 254 no rank Olsenella sp. oral taxon 807 0 1 712411 254 species Olsenella uli 0 1 133926 274 species Olsenella sp. Marseille-P2300 383 species 0 1 1805478 460 genus 2767353 0 1 species 460 1382 0 1 Atopobium parvulum Coriobacteriaceae 1 53 family 8599 0 5 84107 210 no rank 84113 0 1 Coriobacteriaceae bacterium 68-1-3 210 species 1531429 0 1 0 1 33870 133 genus 133 species 33871 1 0 Coriobacterium glomerans Collinsella 1 genus 8203 2 0 102106 3 Collinsella aerofaciens 8200 species 1 0 74426 Eggerthellales 1 127 order 7217 1643822 16 0 Eggerthellaceae 1 family 7090 1643826 15 0 1313 1 Slackia 84108 0 2 393 genus 2 Slackia heliotrinireducens 0 1 84110 391 species 0 2 1981050 genus 337 1 1 Phoenicibacter Phoenicibacter massiliensis 0 1 1944646 species 336 535 genus 1 0 447020 Adlercreutzia equolifaciens species 535 1 0 446660 108 genus 0 1 84162 Cryptobacterium curtum 0 1 84163 species 108 1 genus 251 79603 0 2 Denitrobacterium 1 Denitrobacterium detoxificans 1 0 79604 250 species 1 Eggerthella 84111 3 0 3202 genus 115 2648737 0 1 255 no rank 502558 1 0 255 species Eggerthella sp. YY7918 Eggerthella lenta 2832 species 0 1 84112 951 genus 644652 0 3 2 Gordonibacter 1 Gordonibacter massiliensis 1841863 1 0 462 species 1335613 0 1 species 487 Gordonibacter urolithinfaciens 84995 0 4 187 class 4 0 84996 order 187 7 1 Rubrobacterales family 180 3 0 84997 Rubrobacter 1 genus 180 0 3 42255 1 49 species 0 1 42256 Rubrobacter radiotolerans species 130 49319 1 0 Rubrobacter xylanophilus 0 561 1760 class 410571 582 1 Actinobacteria 0 6 85013 406 order 74712 0 6 406 family 5 1 Frankiaceae 1 Frankia 5 0 1854 401 genus 2 species 96 1 0 1859 Frankia alni 132 no rank 2632575 1 0 species 132 298653 1 0 Frankia sp. EAN1pec 1 0 298654 109 species Frankia inefficax Frankia casuarinae 1 0 106370 62 species Propionibacteriales 1 10 order 2358 85009 0 30 Nocardioidaceae 1 9 family 823 0 11 85015 71 genus 1 0 2040 Aeromicrobium erythreum 2041 0 1 species 71 1 0 116071 139 genus 139 species 0 1 75385 Micropruina glycogenica 1 Pimelobacter 1 0 2 2044 genus 104 2045 1 0 species 103 Pimelobacter simplex 1 Kribbella 1 182639 2 0 155 genus 154 species 182640 1 0 Kribbella flavida Nocardioides 1 345 genus 1839 0 4 6 2045452 1 0 species 109 Nocardioides sp. 78 Nocardioides dokdonensis 104 species 450734 1 0 no rank 126 2615069 0 1 Nocardioides sp. JS614 126 species 196162 1 0 1 Propionibacteriaceae 20 31957 0 18 1525 family genus 282 3 0 1912216 106 species 0 1 1747 Cutibacterium acnes species 48 33011 0 1 Cutibacterium granulosum Cutibacterium avidum species 128 33010 0 1 3 424 genus 72763 0 5 Tessaracoccus 1 2635419 1 0 no rank 129 129 species 1909732 1 0 Tessaracoccus sp. T2.5-30 Tessaracoccus aquimaris 1 0 1332264 143 species Tessaracoccus flavus species 70 1610493 1 0 Tessaracoccus flavescens species 79 0 1 399497 1 0 2801844 genus 99 species 99 0 1 1750 Pseudopropionibacterium propionicum 1 Microlunatus 1 29404 0 2 102 genus 101 species 29405 0 1 Microlunatus phosphovorus 161 genus 203133 0 1 no rank 161 0 1 2633994 Propionimicrobium sp. Marseille-P3275 161 species 1871034 1 0 2 genus 165 2 0 1912215 Acidipropionibacterium 1 Acidipropionibacterium acidipropionici species 163 0 1 1748 5 272 genus 3 0 1743 Propionibacterium 1 Propionibacterium freudenreichii 0 1 1744 217 species 0 1 2608905 50 no rank Propionibacterium sp. oral taxon 193 50 species 1 0 671223 9 4125 order 0 38 85010 Pseudonocardiales 1 1 Pseudonocardiaceae 55 37 0 2070 4116 family 1 Kutzneria 2 2 0 43356 genus 266 Kutzneria albida 264 species 43357 1 0 1 Actinoalloteichus 65496 0 6 genus 650 5 Actinoalloteichus sp. ADI127-7 1 0 1612552 162 species 0 1 1470176 101 species Actinoalloteichus hoggarensis 2644606 0 2 no rank 269 species 159 1612551 1 0 Actinoalloteichus sp. GBA129-24 Actinoalloteichus sp. AHMU CJ021 110 species 2072503 0 1 0 1 340345 113 species Actinoalloteichus hymeniacidonis 1051 genus 1813 7 0 11 Amycolatopsis 1 136 species 1814 0 1 Amycolatopsis methanolica Amycolatopsis orientalis species 325 0 1 31958 154 species 0 1 208439 Amycolatopsis japonica Amycolatopsis mediterranei 154 species 0 1 33910 271 no rank 2 0 2618356 Amycolatopsis sp. BJA-103 species 117 1911175 1 0 Amycolatopsis sp. AA4 154 species 0 1 1896961 1 Lentzea 165301 0 2 162 genus 1 species 161 1586287 1 0 Lentzea guizhouensis genus 130 2 0 674734 2 Alloactinosynnema 1 no rank 128 2636053 0 1 species 128 1 0 1653480 Alloactinosynnema sp. L-07 44 genus 1851 1 0 1852 0 1 species 44 Saccharomonospora viridis 1 Pseudonocardia 27 1847 0 8 genus 749 Pseudonocardia dioxanivorans 240495 1 0 99 species 0 6 2619320 no rank 623 105 species 0 1 1688404 Pseudonocardia sp. EC080610-09 0 1 1096856 species 108 Pseudonocardia sp. EC080619-01 Pseudonocardia sp. AL041005-10 0 1 445576 species 109 Pseudonocardia sp. EC080625-04 species 89 1 0 1096868 Pseudonocardia sp. HH130630-07 109 species 1690815 0 1 1641402 0 1 103 species Pseudonocardia sp. HH130629-09 1 Saccharopolyspora 4 0 2 1835 191 genus species 187 0 1 1836 Saccharopolyspora erythraea genus 103 142577 1 0 1 0 530584 103 species Prauserella marina genus 150 2071 1 0 Saccharothrix espanaensis 150 species 1 0 103731 2029 1 0 genus 172 1 0 860235 172 species Kibdelosporangium phytohabitans Actinosynnema 1 13 393 genus 0 3 40566 Actinosynnema mirum 197 species 0 1 40567 1 0 42197 183 species Actinosynnema pretiosum 1 Kineosporiales 1 622452 0 4 order 81 1 Kineosporiaceae 83778 3 0 80 family 1 2 0 33981 79 genus 2 1 Kineococcus Kineococcus radiotolerans species 77 0 1 131568 order 36 1643683 2 0 1 Acidothermaceae 0 2 85032 36 family 1 genus 35 28048 0 1 Acidothermus cellulolyticus 35 species 28049 0 1 1 Actinomycetales 2 0 18 2037 order 2377 1 Actinomycetaceae 334 0 17 2049 2375 family 1 Mobiluncus 3 2050 2 0 genus 311 Mobiluncus curtisii 1 0 2051 308 species 2 0 28263 127 genus 1 1 Arcanobacterium Arcanobacterium haemolyticum 126 species 28264 1 0 9 0 9 1654 1142 genus 1 Actinomyces species 403 1852377 1 0 Actinomyces pacaensis Actinomyces sp. VUL4_3 1 0 1912795 70 species Actinomyces gaoshouyii 1960083 0 1 species 55 0 1 544580 158 species Actinomyces oris 95 species 0 1 111015 Actinomyces radicidentis 0 3 2609248 352 no rank 108 species 1851395 1 0 Actinomyces sp. Chiba101 Actinomyces sp. oral taxon 414 0 1 712122 species 117 Actinomyces sp. oral taxon 897 species 127 0 1 2081702 genus 259 2529408 1 0 species 259 52773 1 0 Actinomyces meyeri 148 genus 1069494 1 0 1661 1 0 148 species Trueperella pyogenes genus 54 0 1 1653174 0 1 59505 species 54 Actinotignum schaalii 0 2 1643818 no rank 64 9 64 genus 2 0 147067 Thermobispora 1 species 55 2006 1 0 Thermobispora bispora 24 0 85004 order 360313 23 1 Bifidobacteriales family 360290 23 0 31953 579 Bifidobacteriaceae 1 genus 87 196081 0 1 Scardovia inopinata 78259 0 1 species 87 Bifidobacterium 1 163 genus 353142 1678 0 19 638619 0 1 139 species Bifidobacterium actinocoloniiforme 35760 1 0 248 species Bifidobacterium choerinum Bifidobacterium breve 1685 1 0 8461 species 216816 0 1 17032 species Bifidobacterium longum Bifidobacterium pseudolongum 1 0 1694 368 species 250 species 0 1 33905 Bifidobacterium thermophilum Bifidobacterium animalis 303 species 1 0 28025 Bifidobacterium adolescentis species 172688 1680 0 1 Bifidobacterium asteroides 100 species 0 1 1684 1681 0 1 species 9365 Bifidobacterium bifidum 0 1 1689 species 1051 Bifidobacterium dentium species 109 1687 0 1 Bifidobacterium coryneforme Bifidobacterium catenulatum 1 10700 36267 species 2 0 1686 subspecies 25567 630129 0 1 Bifidobacterium kashiwanohense Bifidobacterium indicum 1691 0 1 species 107 Bifidobacterium angulatum 1683 0 1 2217 species Bifidobacterium scardovii 158787 0 1 503 species Bifidobacterium pseudocatenulatum 28026 1 0 103771 species genus 6320 2701 1 0 species 6320 0 1 2702 Gardnerella vaginalis 196082 1 0 162 genus 1 0 78258 162 species Parascardovia denticolens 59 9434 order 126 0 85006 Micrococcales 1 Cellulomonadaceae 1 6 334 family 85016 6 0 1 Cellulomonas 6 5 0 1707 328 genus Cellulomonas flavigena 1711 0 1 76 species Cellulomonas fimi 1708 1 0 species 80 Cellulomonas gilvus 0 1 11 92 species 2620175 0 1 no rank 74 Cellulomonas sp. PSBB021 2003551 0 1 species 74 27 family 2365 0 44 85023 Microbacteriaceae 1 Microbacterium 1 14 genus 893 0 14 33882 Microbacterium aurum 102 species 36805 0 1 species 46 1 0 2033 Microbacterium testaceum species 84 1 0 300019 Microbacterium paludicola 8 0 2609290 518 no rank Microbacterium sp. PAMC 28756 1795053 0 1 species 104 66 species 0 1 367477 Microbacterium sp. XT11 species 61 1 0 1906742 Microbacterium sp. BH-3-3-3 Microbacterium sp. No. 7 0 1 1714373 64 species Microbacterium sp. 1.5R 57 species 1916917 0 1 0 1 1938334 species 42 Microbacterium sp. TPU 3598 species 55 1 0 1696072 Microbacterium sp. CGR1 1 0 2103230 69 species Microbacterium sp. str. 'China' species 95 0 1 162426 Microbacterium hominis 84292 0 1 34 species Microbacterium chocolatum 43 genus 1705353 1 0 species 43 1 0 708131 Aurantimicrobium minutum 100 genus 0 2 33886 Rathayibacter toxicus 66 species 145458 1 0 Rathayibacter tritici 33888 1 0 34 species 1 186 genus 110932 2 0 Leifsonia 1 185 species 1 0 1575 Leifsonia xyli 1759331 1 0 50 genus Cnuibacter physcomitrellae species 50 1619308 0 1 0 6 1573 genus 261 18 1 Clavibacter 54 243 species 0 5 28447 Clavibacter michiganensis 1 Clavibacter insidiosus 1 0 33014 subspecies 58 31964 0 1 43 subspecies Clavibacter sepedonicus Clavibacter nebraskensis 31963 0 1 subspecies 43 Clavibacter capsici 1874630 0 1 45 subspecies 518733 0 1 79 genus 79 species 412690 1 0 Microterricola viridarii 3 0 69578 269 genus 4 1 Cryobacterium 0 1 2649013 139 no rank Cryobacterium sp. LW097 139 species 1978566 0 1 670052 1 0 species 126 Cryobacterium arcticum 2 0 337004 genus 39 1 1 Microcella species 38 1 0 279828 Microcella alkaliphila 1 Agromyces 1 2 0 33877 91 genus Agromyces aureus species 90 0 1 453304 genus 40 1434032 0 1 Pontimonas salivibrio 1 0 1159327 40 species 1655488 3 0 65 no rank 65 clade 0 3 1655489 1 Rhodoluna 1 3 0 529883 65 genus Candidatus Rhodoluna planktonica 28 species 535712 1 0 529884 1 0 36 species Rhodoluna lacicola Curtobacterium 1 3 171 genus 2034 0 4 2 0 257496 130 no rank Curtobacterium sp. MR_MD2014 1561023 0 1 45 species species 85 1905847 1 0 Curtobacterium sp. BH-2-1-1 Curtobacterium pusillum 38 species 1 0 69373 genus 51 447237 0 1 51 no rank 2626248 0 1 1795630 0 1 species 51 Frondihabitans sp. PAMC 28766 41 no rank 577468 0 1 genus 41 2038 0 1 Tropheryma whipplei species 41 1 0 2039 2 0 145360 64 family Sanguibacter 1 2 64 genus 0 2 60919 60920 1 0 62 species Sanguibacter keddieii 85017 0 7 family 368 11 1 Promicromonosporaceae genus 91 186188 0 1 Xylanimonas cellulosilytica 1 0 186189 91 species 1 Isoptericola 5 3 0 254250 151 genus 1 0 139208 species 48 Isoptericola variabilis Isoptericola dokdonensis 372663 1 0 species 98 157920 2 0 genus 115 67 no rank 1 0 2624466 Cellulosimicrobium sp. TH-20 species 67 0 1 1980001 0 1 1710 48 species Cellulosimicrobium cellulans 89 family 125316 1 0 89 genus 1 0 84756 Beutenbergia cavernae 89 species 84757 0 1 0 1 85022 family 25 25 genus 43673 1 0 species 25 1 0 43674 Jonesia denitrificans 137 family 4543 36 0 1268 Micrococcaceae 1 Pseudarthrobacter 1 1 362 genus 4 0 1742993 0 1 361575 107 species Pseudarthrobacter phenanthrenivorans species 159 1 0 121292 Pseudarthrobacter sulfonivorans Pseudarthrobacter chlorophenolicus species 95 85085 0 1 Arthrobacter 1 35 genus 1894 1663 0 15 1459 no rank 12 0 235627 Arthrobacter sp. LS16 species 164 1690248 0 1 Arthrobacter sp. U41 species 117 0 1 1849032 0 1 1118963 species 85 Arthrobacter sp. Rue61a 1 0 1652545 species 126 Arthrobacter sp. YC-RL1 Arthrobacter sp. ATCC 21022 0 1 1771959 70 species Arthrobacter sp. QXT-31 species 136 1357915 0 1 Arthrobacter sp. YN species 181 2020486 0 1 species 109 2079227 0 1 Arthrobacter sp. PGP41 Arthrobacter sp. ERGS1:01 species 121 1 0 1704044 Arthrobacter sp. ZXY-2 1 0 1806905 species 64 Arthrobacter sp. PAMC 25486 149 species 1494608 0 1 137 species 1 0 290399 Arthrobacter sp. FB24 Arthrobacter crystallopoietes 37928 1 0 species 179 species 221 0 1 656366 Arthrobacter alpinus 0 1 1645 57 genus 1646 0 1 species 57 Renibacterium salmoninarum 95 genus 1 0 1742992 Paenarthrobacter aurescens 0 1 43663 95 species 1 0 596707 82 genus Sinomonas atrocyanea species 82 37927 0 1 genus 89 2078575 1 0 Arthrobacter sp. IHBB 11108 species 89 1 0 1618207 2 0 1269 114 genus 2 1 Micrococcus Micrococcus luteus species 112 1 0 1270 Kocuria 1 3 genus 256 57493 0 4 species 62 0 1 71999 Kocuria palustris 113 species 1 0 72000 Kocuria rhizophila 78 species 1 0 446860 Kocuria flava 1 0 1742989 genus 189 1 0 256701 189 species Glutamicibacter arilaitensis 410 genus 3 0 32207 1 Rothia 1 0 1 43675 species 304 Rothia mucilaginosa Rothia dentocariosa 2047 1 0 species 105 1 Neomicrococcus 2 0 2 1868332 858 genus Neomicrococcus aestuarii species 856 0 1 556325 1 Dermabacteraceae 5 85020 9 0 686 family 13 43668 6 0 genus 558 1 Brachybacterium Brachybacterium sp. VM2412 species 142 2017484 0 1 Brachybacterium ginsengisoli species 68 1 0 1331682 Brachybacterium faecium 0 1 43669 species 127 1 0 2623841 no rank 105 Brachybacterium sp. P6-10-X1 105 species 0 1 1903186 Brachybacterium sp. VR2415 103 species 1 0 2017485 43 genus 36739 0 1 Dermabacter vaginalis species 43 1 0 1630135 genus 80 472568 1 0 species 80 472569 0 1 Devriesea agamarum 1 family 194 85019 0 3 Brevibacteriaceae 1 4 193 genus 0 2 1696 Brevibacterium 1 189 species 0 1 1703 Brevibacterium linens Dermacoccaceae 1 family 253 145357 0 5 1 57495 0 1 69 genus 1274 0 1 species 69 Dermacoccus nishinomiyaensis 81 genus 745364 0 1 Luteipulveratus mongoliensis species 81 0 1 571913 1 Kytococcus 8 0 2 57499 102 genus 1276 0 1 species 94 Kytococcus sedentarius 85018 0 2 62 family 1 Dermatophilus 0 2 1862 62 genus 1 0 1 1863 61 species Dermatophilus congolensis Intrasporangiaceae 1 family 351 85021 0 8 3 1 genus 120 0 2 267408 Arsenicicoccus 1 0 1 2663846 119 no rank 1658671 1 0 species 119 Arsenicicoccus sp. oral taxon 190 265976 0 2 genus 90 1 1 Serinicoccus Serinicoccus sp. JLT9 89 species 1 0 1758689 Janibacter 1 73 genus 53457 0 2 2 Janibacter indicus 857417 0 1 species 71 53357 0 1 genus 65 Intrasporangium calvum 65 species 53358 0 1 1 Nakamurellales 1643684 0 4 126 order 2 family 124 85031 0 3 2 Nakamurellaceae 1 1 0 2 53460 122 genus 1 Nakamurella Nakamurella multipartita 121 species 1 0 53461 82 0 85011 order 11500 34 1 Streptomycetales 1 Streptomycetaceae 119 81 0 2062 family 11466 4 genus 638 2063 5 0 Kitasatospora 1 Kitasatospora setae 2066 0 1 species 189 Kitasatospora albolonga 97 species 68173 1 0 0 1 2633591 no rank 197 Kitasatospora sp. MMS16-BH015 197 species 2018025 1 0 151 species 1894 0 1 Kitasatospora aureofaciens 1 Streptomyces 348 0 75 1883 10709 genus 1 0 67267 species 115 Streptomyces alboflavus Streptomyces noursei 168 species 0 1 1971 Streptomyces peucetius 0 1 1950 species 107 Streptomyces gilvosporeus species 152 553510 0 1 Streptomyces xinghaiensis 0 1 1038928 89 species Streptomyces niveus 193462 1 0 species 143 629295 0 2 178 species group 81 species subgroup 1 0 1482558 Streptomyces globisporus 0 1 1908 species 81 0 1 1482596 97 species subgroup 97 species 0 1 1911 Streptomyces griseus Streptomyces albulus species 137 0 1 68570 0 2 1477431 269 species group Streptomyces coelicolor 125 species 1902 0 1 Streptomyces sampsonii 42239 1 0 144 species 1642299 1 0 species 135 Streptomyces alfalfae no rank 3101 2593676 0 24 species 77 1751294 0 1 Streptomyces sp. 4F species 154 1561022 0 1 Streptomyces sp. CCM_MD2014 1262452 0 1 species 160 Streptomyces sp. 769 species 147 1972846 1 0 Streptomyces sp. Sge12 Streptomyces sp. CLI2509 79 species 1 0 1984801 Streptomyces sp. P3 0 1 2135430 species 164 444103 1 0 131 species Streptomyces sp. CNQ-509 0 1 1849967 species 109 Streptomyces sp. SAT1 Streptomyces sp. CFMR 7 0 1 1649184 species 99 Streptomyces sp. RTd22 1841249 0 1 species 203 Streptomyces sp. TN58 234612 1 0 95 species Streptomyces sp. WAC00288 114 species 0 1 2094021 Streptomyces sp. FR-008 1 0 206662 140 species 0 1 1661694 species 94 Streptomyces sp. Tue 6075 1 0 1812480 120 species Streptomyces sp. fd1-xmd 84 species 862751 0 1 Streptomyces sp. SirexAA-E Streptomyces sp. CMB-StM0423 species 156 2059884 0 1 Streptomyces sp. S8 species 73 1837283 1 0 Streptomyces sp. CdTB01 1725411 0 1 species 142 Streptomyces sp. Mg1 465541 1 0 species 136 163 species 0 1 1961713 Streptomyces sp. MOE7 Streptomyces sp. M56 216 species 1495638 1 0 140 species 1964449 0 1 Streptomyces sp. 3211 1265601 0 1 105 species Streptomyces sp. PAMC 26508 1940 1 0 species 99 Streptomyces albireticuli Streptomyces collinus species 118 42684 0 1 139 species 146923 0 1 Streptomyces parvulus Streptomyces autolyticus species 165 1 0 75293 0 1 1889 species 102 Streptomyces ambofaciens 0 1 47763 446 species Streptomyces lydicus 1437453 1 0 152 species Streptomyces leeuwenhoekii Streptomyces reticuli 0 1 1926 species 135 1935 1 0 species 149 Streptomyces violaceoruber 124 species 0 1 1901 Streptomyces clavuligerus 149 species 1783515 0 1 Streptomyces sp. S10(2016) Streptomyces griseochromogenes 68214 1 0 species 120 Streptomyces formicae 1616117 0 1 species 86 134 species 0 1 408015 Streptomyces xiamenensis Streptomyces albus 1 0 1888 261 species Streptomyces cattleya 1 0 29303 species 127 species 143 1907 0 1 Streptomyces glaucescens Streptomyces pristinaespiralis 38300 0 1 109 species Streptomyces malaysiensis 169 species 92644 0 1 Streptomyces cyaneogriseus 147 species 0 1 68192 1 0 1914 species 116 Streptomyces lavendulae 141 species 0 1 164348 Streptomyces puniciscabiei Streptomyces pratensis species 89 0 1 1169025 Streptomyces rubrolavendulae species 94 1 0 285473 0 1 1355015 species 82 Streptomyces pluripotens 362257 1 0 144 species Streptomyces vietnamensis Streptomyces sp. XZHG99 121 species 1 0 2049881 Streptomyces lincolnensis 134 species 0 1 1915 species 131 0 1 1930 Streptomyces scabiei 379067 0 1 species 200 Streptomyces bingchenggensis 68249 0 1 species 260 Streptomyces pactum Streptomyces hygroscopicus 1912 1 0 species 351 Streptomyces violaceusniger species 138 68280 1 0 Streptomyces avermitilis 1 0 33903 128 species 0 1 54571 species 227 Streptomyces venezuelae Streptomyces chartreusis 0 1 1969 species 112 1 0 68202 106 species Streptomyces fulvissimus Streptomyces lividans 1 0 1916 species 119 4 0 4 414714 order 289 1 Catenulisporales 0 3 414877 family 285 4 1 Catenulisporaceae 2 genus 281 414878 0 2 Catenulispora 1 279 species 304895 1 0 Catenulispora acidiphila order 75 622450 2 0 Actinopolysporaceae 1 family 75 622451 0 2 1 genus 74 1849 1 0 Actinopolyspora erythraea 74 species 1 0 414996 1 0 8 1643682 order 357 1 Geodermatophilales 7 356 family 85030 0 7 Geodermatophilaceae 1 88138 2 0 135 genus 6 1 Modestobacter 0 1 477641 129 species Modestobacter marinus Blastococcus 1 85 genus 2 0 38501 6 Blastococcus saxobsidens species 79 138336 0 1 7 2 0 1860 genus 129 1 Geodermatophilus 1861 1 0 species 122 Geodermatophilus obscurus 4 0 85014 order 152 3 1 Glycomycetales 1 family 149 3 0 85034 Glycomycetaceae 1 genus 148 283810 0 2 2 Stackebrandtia 1 species 146 0 1 283811 Stackebrandtia nassauensis no rank 41 1 0 52018 1 0 1650658 species 41 Actinobacteria bacterium IMCC26256 115 160 0 85007 order 14447 1 Corynebacteriales 231 no rank 1 0 697024 1 0 1847725 231 genus Lawsonella clevelandensis 1 0 1528099 231 species family 227 0 3 85028 genus 227 2060 3 0 1 Tsukamurella 1 Tsukamurella tyrosinosolvens 85 species 0 1 57704 species 141 2061 1 0 Tsukamurella paurometabola 665 family 85026 0 9 7 Gordoniaceae 1 1 Gordonia 0 8 2053 658 genus 15 160 no rank 2657482 0 2 Gordonia sp. KTR9 1 0 337191 species 89 Gordonia sp. YC-JH1 species 71 1 0 2059875 Gordonia iterans 57 species 1004901 1 0 82 species 0 1 2055 Gordonia terrae Gordonia phthalatica 1 0 1136941 species 134 108 species 0 1 84595 Gordonia polyisoprenivorans Gordonia bronchialis 102 species 0 1 2054 1 Dietziaceae 1 0 4 85029 family 112 1 Dietzia 1 37914 0 3 genus 111 no rank 55 0 1 2617939 1 0 712270 species 55 Dietzia sp. oral taxon 368 55 species 499555 1 0 Dietzia timorensis 3104 family 85025 31 0 15 Nocardiaceae 1 Rhodococcus 1 52 genus 1832 1827 23 0 Rhodococcus aetherivorans 1 0 191292 87 species species 130 132919 1 0 Rhodococcus jostii no rank 786 192944 12 0 Rhodococcus sp. 2G 0 1 1570939 60 species 1653478 1 0 species 66 Rhodococcus sp. PBTS 1 70 species 1727214 1 0 Rhodococcus sp. H-CA8f Rhodococcus sp. WB1 1 0 1033922 100 species Rhodococcus sp. 008 1 0 1723645 45 species Rhodococcus sp. p52 0 1 935199 48 species Rhodococcus sp. PBTS 2 1 0 1653479 species 73 1 0 1564114 species 76 Rhodococcus sp. B7740 1 0 1807790 species 46 Rhodococcus sp. BH4 40 species 1045808 0 1 Rhodococcus sp. YL-1 Rhodococcus sp. WMMA185 679318 0 1 species 53 Rhodococcus sp. MTM3W5.2 0 1 1805827 species 109 Rhodococcus qingshengii species 54 1 0 334542 Rhodococcus opacus 1 0 37919 229 species Rhodococcus pyridinivorans species 78 1 0 103816 90 species 1828 0 1 Rhodococcus fascians Rhodococcus rhodochrous species 54 1829 1 0 Rhodococcus hoagii 0 1 43767 species 71 species 116 1830 1 0 Rhodococcus ruber species 85 1833 1 0 Rhodococcus erythropolis 1 Nocardia 25 0 7 1817 1257 genus Nocardia terpenica 212 species 455432 1 0 Nocardia seriolae 189 species 1 0 37332 137 species 37330 1 0 Nocardia nova 37329 1 0 species 183 Nocardia farcinica 1 0 37326 240 species Nocardia brasiliensis 135487 0 1 species 271 Nocardia cyriacigeorgica 23 0 52 1653 family 4868 1 Corynebacteriaceae 1 Corynebacterium 134 1716 51 0 4845 genus Corynebacterium uterequi 69 species 1072256 0 1 1 0 146827 148 species Corynebacterium simulans 57 species 1 0 571915 Corynebacterium mustelae species 65 35757 1 0 Corynebacterium cystitidis species 67 42817 0 1 Corynebacterium argentoratense Corynebacterium efficiens 152794 0 1 152 species 1705 1 0 species 92 Corynebacterium stationis 191493 0 1 97 species Corynebacterium sphenisci Corynebacterium casei 66 species 1 0 160386 no rank 127 2624378 0 2 54 species 0 1 1487956 Corynebacterium sp. ATCC 6931 702967 1 0 73 species Corynebacterium sp. NML98-0116 1121358 0 1 species 84 Corynebacterium doosanense Corynebacterium terpenotabidum 89154 0 1 species 113 species 116 1 0 1230998 Corynebacterium frankenforstense 0 1 65058 species 95 Corynebacterium ulcerans species 131 1 0 1223514 Corynebacterium humireducens Corynebacterium kutscheri species 62 0 1 35755 Corynebacterium urealyticum 43771 0 1 66 species 38289 0 1 169 species Corynebacterium jeikeium Corynebacterium imitans 156978 1 0 110 species Corynebacterium halotolerans 1 0 225326 species 79 Corynebacterium epidermidicanis species 82 1 0 1050174 0 1 161899 species 59 Corynebacterium singulare Corynebacterium marinum 0 1 349751 species 87 Corynebacterium aquilae 0 1 203263 62 species Corynebacterium falsenii species 144 108486 1 0 Corynebacterium maris 65 species 0 1 575200 146 species 1721 1 0 Corynebacterium callunae species 57 0 1 187491 Corynebacterium glaucum species 142 0 1 1404244 Corynebacterium glyciniphilum Corynebacterium camporealensis 161896 1 0 species 100 Corynebacterium lactis 0 1 1231000 species 81 1719 0 1 85 species Corynebacterium pseudotuberculosis species 189 1718 0 1 Corynebacterium glutamicum Corynebacterium vitaeruminis 115 species 38305 1 0 Corynebacterium aurimucosum 169292 0 1 species 93 83 species 28028 0 1 Corynebacterium flavescens Corynebacterium crudilactis 1652495 1 0 86 species 1 0 43770 species 177 Corynebacterium striatum Corynebacterium testudinoris 136857 1 0 59 species [Brevibacterium] flavum 1 0 92706 species 97 59 species 1 0 1697 Corynebacterium ammoniagenes Corynebacterium ureicelerivorans 0 1 401472 66 species 1408191 1 0 species 81 Corynebacterium deserti Corynebacterium diphtheriae 125 species 1717 1 0 1727 1 0 species 137 Corynebacterium variabile Corynebacterium phocae 161895 0 1 species 83 258224 0 1 60 species Corynebacterium resistens Corynebacterium atypicum 191610 0 1 67 species species 59 0 1 161879 Corynebacterium kroppenstedtii 1 Mycobacteriaceae 25 56 0 1762 family 5078 178 genus 1073531 0 2 Mycobacterium terrae 88 species 1788 1 0 Mycobacterium sinense species 90 875328 0 1 191 0 34 1763 genus 2906 1 Mycobacterium species 124 0 1 1768 Mycobacterium kansasii Mycobacterium liflandii 0 1 261524 79 species Mycobacterium ulcerans species 89 1809 0 1 Mycobacterium haemophilum species 54 29311 1 0 Mycobacterium marinum 0 1 1781 119 species 2642494 0 13 968 no rank 164756 0 1 48 species Mycobacterium sp. MCS Mycobacterium sp. QIA-37 60 species 1561223 1 0 1682113 0 1 67 species Mycobacterium sp. YC-RL4 Mycobacterium sp. VKM Ac-1817D 0 1 1273687 84 species Mycobacterium sp. EPa45 1 0 1545728 79 species 19 species 0 1 1168287 Mycobacterium sp. MOTT36Y 60 species 164757 1 0 Mycobacterium sp. JLS 1570328 0 1 species 87 Mycobacterium sp. NRRL B-3805 74 species 2051552 0 1 Mycobacterium sp. PYR15 Mycobacterium sp. WY10 1 0 1920667 85 species Mycobacterium sp. KMS 1 0 189918 species 48 1 0 212767 101 species Mycobacterium sp. JS623 1879023 1 0 156 species Mycobacterium sp. djl-10 Mycobacterium leprae 1 0 1769 species 33 1 0 2249310 60 species group Mycobacterium shigaense species 60 722731 1 0 0 8 120793 species group 714 0 1 339268 143 species Mycobacterium colombiense species 344 1764 0 1 Mycobacterium avium species 24 1 0 1138383 Mycobacterium paraintracellulare species 58 701042 1 0 Mycobacterium marseillense Mycobacterium intracellulare 1 26 145 species 4 0 1767 75 subspecies 222805 0 1 Mycobacterium chimaera 0 1 35617 9 subspecies Mycobacterium indicus pranii Mycobacterium yongonense 1203599 0 1 subspecies 35 0 4 77643 species group 356 1 Mycobacterium tuberculosis 1773 0 3 278 species 102 Mycobacterium africanum 33894 0 1 biotype 86 Mycobacterium bovis biotype 90 0 1 1765 Mycobacterium canettii 78331 0 1 78 species 482462 1 0 119 species Mycobacterium dioxanotrophicus 0 1 697025 55 genus 0 1 639313 species 55 Hoyosella subflava 640 genus 5 0 670516 species 54 0 1 83262 Mycobacterium immunogenum 1 0 1774 73 species Mycobacterium chelonae Mycobacterium stephanolepidis species 40 0 1 1520670 Mycobacterium saopaulense 0 1 1578165 species 62 Mycobacterium abscessus species 411 0 1 36809 1866885 13 0 1274 genus Mycobacterium aurum species 130 1791 1 0 Mycobacterium thermoresistibile 1797 0 1 species 99 0 1 1810 species 107 Mycobacterium vaccae Mycobacterium vanbaalenii 0 1 110539 101 species 101 species 134601 1 0 Mycobacterium goodii Mycobacterium smegmatis 0 1 1772 105 species 1771 0 1 species 109 Mycobacterium phlei 110 species 758802 1 0 Mycobacterium litorale Mycobacterium gilvum 88 species 1 0 1804 Mycobacterium rhodesiae 36814 1 0 59 species 1766 0 1 89 species Mycobacterium fortuitum Mycobacterium neoaurum 87 species 1795 1 0 species 89 1800 0 1 Mycobacterium chubuense 1 Segniliparaceae 1 3 0 316606 family 47 1 Segniliparus 286801 2 0 genus 46 3 Segniliparus rotundus species 43 1 0 286802 1 Micromonosporales 4 0 20 85008 1988 order Micromonosporaceae 1 family 1984 28056 0 19 31 7 genus 554 4 0 1873 Micromonospora 1 Verrucosispora maris 1 0 1003110 species 155 Micromonospora aurantiaca species 173 47850 1 0 1 0 2617518 219 no rank 1 0 648999 219 species Micromonospora sp. L5 11 0 4 673534 413 genus 1 Plantactinospora 2631981 0 3 402 no rank 162 species 0 1 2024580 Plantactinospora sp. KBS50 Plantactinospora sp. BB1 species 121 2071627 1 0 119 species 1 0 2108470 Plantactinospora sp. BC1 Verrucosispora 84593 1 0 genus 2 Actinoplanes 1 803 genus 6 0 1865 14 Actinoplanes friuliensis 196914 0 1 species 137 Actinoplanes missouriensis 142 species 1866 0 1 0 3 2626549 510 no rank 202 species 0 1 649831 Actinoplanes sp. N902-109 154 species 134676 1 0 Actinoplanes sp. SE50/110 Actinoplanes sp. SE50 154 species 2033844 1 0 1 Salinispora 168694 0 3 181 genus 5 species 77 168695 1 0 Salinispora tropica Salinispora arenicola 168697 1 0 99 species order 1351 85012 15 0 15 Streptosporangiales 1 1 Thermomonosporaceae 2 3 0 2012 family 267 Thermomonospora 1 265 genus 2019 2 0 11 Thermomonospora curvata 1 0 2020 species 254 2004 5 0 607 family 5 1 Streptosporangiaceae 0 2 83681 387 genus 3 1 Nonomuraea 2593643 1 0 no rank 384 Nonomuraea sp. ATCC 55076 species 384 1909395 0 1 215 genus 2000 2 0 1 Streptosporangium 1 Streptosporangium roseum 2001 0 1 species 214 1 Nocardiopsaceae 12 83676 0 6 462 family 2 4 0 2013 360 genus 1 Nocardiopsis species 107 2014 1 0 Nocardiopsis dassonvillei species 102 53437 0 1 Nocardiopsis alba Nocardiopsis gilva species 149 0 1 280236 genus 90 0 1 83677 Thermobifida fusca species 90 1 0 2021 2039638 10 0 order 469 2162846 10 0 469 family 2 622681 7 0 386 genus 1 Candidatus Planktophila Candidatus Planktophila versatilis 1 0 1884905 species 86 Candidatus Planktophila limnetica species 52 573600 0 1 Candidatus Planktophila vernalis 60 species 1884907 0 1 Candidatus Planktophila dulcis 1884914 0 1 species 94 Candidatus Planktophila sulfonica 42 species 1 0 1884904 Candidatus Planktophila lacus species 50 1884913 0 1 genus 83 2039639 0 3 Candidatus Nanopelagicus limnes 36 species 1884634 1 0 1884915 0 1 16 species Candidatus Nanopelagicus hibericus 0 1 1884916 species 31 Candidatus Nanopelagicus abundans 1 Thermoleophilia 1497346 0 4 116 class 1 5 order 115 3 0 588673 Solirubrobacterales 1 1 Conexibacteraceae 2 0 320583 110 family 1 109 genus 191494 0 1 109 species 1 0 191495 Conexibacter woesei 1752188 0 4 148 no rank species 20 0 1 1848756 Actinobacteria bacterium IMCC26103 Actinobacteria bacterium IMCC26077 species 62 0 1 1848755 1 0 1848255 species 31 Actinobacteria bacterium IMCC25003 35 species 0 1 1848754 Actinobacteria bacterium IMCC19121 84992 0 3 71 class 84993 3 0 71 order 2 1 Acidimicrobiales 2448023 1 0 family 39 39 genus 1 0 682522 species 39 467094 1 0 Ilumatobacter coccineus 84994 0 1 30 family 53634 0 1 genus 30 Acidimicrobium ferrooxidans 53635 0 1 species 30 phylum 2090129 1239 683 0 112 Firmicutes 1 Erysipelotrichia 1 1 13404 class 526524 0 11 15 0 10 526525 13403 order 1 Erysipelotrichales 77 128827 9 0 family 13388 1 Erysipelotrichaceae 0 2 191303 991 genus 4 1 Turicibacter 987 no rank 2638206 0 1 987 species 1 0 1712675 Turicibacter sp. H121 no rank 7394 1 0 544447 7394 species 1834207 0 1 Erysipelotrichaceae bacterium I46 genus 1656 1647 3 0 16 Erysipelothrix 1 1648 0 1 1046 species Erysipelothrix rhusiopathiae 594 species 0 1 1514105 Erysipelothrix larvae 3270 genus 1729679 2 0 3 Faecalibaculum 1 Faecalibaculum rodentium 3267 species 1702221 1 0 1 Negativicutes 0 29 909932 17477 class 28 4548 order 1843488 0 5 7 Acidaminococcales 1 6 family 4541 909930 0 4 Acidaminococcaceae 1 15 0 3 904 genus 4535 1 Acidaminococcus species 2112 1 0 905 Acidaminococcus fermentans 187327 0 1 species 2408 Acidaminococcus intestini 0 10 1843489 6756 order 112 1 Veillonellales 1 Veillonellaceae 31977 9 0 6644 family 130 Veillonella 1 6 4234 genus 3 0 29465 3653 species 0 1 29466 Veillonella parvula 1 0 248315 species 575 Veillonella rodentium Dialister 1 3 792 genus 39948 2 0 789 species 0 1 39950 Dialister pneumosintes 356 genus 909928 0 1 Negativicoccus massiliensis 1 0 1702287 356 species 1 Megasphaera 45 0 2 906 genus 1132 Megasphaera elsdenii 1087 species 1 0 907 order 6145 909929 0 13 22 Selenomonadales 1 Sporomusaceae 1 1 1367 family 4 0 1843490 1 Pelosinus 3 0 365348 genus 1366 4 836 no rank 1 0 2629460 1 0 484770 836 species Pelosinus sp. UFO1 1 0 365349 526 species Pelosinus fermentans Selenomonadaceae 1 4756 family 1843491 8 0 28 970 6 0 3299 genus 43 1 Selenomonas species 1021 0 1 971 Selenomonas ruminantium 0 3 2637378 1659 no rank Selenomonas sp. oral taxon 478 1 0 712538 500 species 1 0 713030 species 741 Selenomonas sp. oral taxon 136 418 species 1 0 1884263 Selenomonas sp. oral taxon 920 1 0 69823 species 576 Selenomonas sputigena 1429 genus 0 1 158846 Megamonas hypermegale 1429 species 158847 1 0 154 class 0 4 1676648 1 Limnochordales 2 0 4 1676649 order 154 Limnochordaceae 1 2 family 152 1676650 3 0 1 Limnochorda 0 2 1676651 genus 150 1 1555112 1 0 149 species Limnochorda pilosa no rank 254 0 1 84086 254 species 243899 1 0 endosymbiont 'TC1' of Trimyema compressum Clostridia 1 1905179 class 186801 203 0 42 3 0 2770089 order 396 family 221 2770093 2 0 Thermosediminibacter 1 1 221 genus 291988 0 2 Thermosediminibacter oceani 220 species 1 0 291990 2770092 0 1 175 family genus 175 0 1 499228 Tepidanaerobacter acetatoxydans species 175 0 1 499229 1 Natranaerobiales 485256 3 0 201 order 2 family 199 2 0 485255 1 Natranaerobius 7 2 0 375928 genus 199 192 species 375929 0 1 Natranaerobius thermophilus Clostridiales 1 order 1898166 153 0 186802 2022 Clostridiaceae 1 104 family 31886 41 0 31979 genus 667 0 4 49082 2 Candidatus Arthromitus 1 665 no rank 3 0 2638829 Candidatus Arthromitus sp. SFB-mouse species 226 0 1 49118 1508644 0 1 228 species Candidatus Arthromitus sp. SFB-mouse-NL Candidatus Arthromitus sp. SFB-rat-Yit 211 species 0 1 1041504 Geosporobacter 1 genus 657 390805 2 0 2 Geosporobacter ferrireducens 1424294 0 1 species 655 1 Alkaliphilus 3 0 114627 717 genus 1 Alkaliphilus metalliredigens 379 species 208226 0 1 Alkaliphilus oremlandii 0 1 461876 337 species 1 Clostridium 129 1485 30 0 29720 genus 2614128 2 0 no rank 5811 Clostridium sp. BNL1100 0 1 755731 650 species species 5161 1 0 1042156 Clostridium sp. SY8519 Clostridium carboxidivorans species 757 217159 1 0 Clostridium botulinum 1491 0 1 3775 species 1167 species 0 1 169679 Clostridium saccharobutylicum species 590 1 0 1513 Clostridium tetani 0 1 394958 species 590 Clostridium taeniosporum Clostridium chauvoei 539 species 0 1 46867 1561 1 0 species 980 Clostridium baratii 29341 0 1 484 species Clostridium argentinense Clostridium butyricum species 1528 1492 1 0 Clostridium cochlearium species 501 1494 1 0 Clostridium autoethanogenum 504 species 0 1 84023 Clostridium aceticum species 429 1 0 84022 Clostridium pasteurianum 1501 0 1 1156 species 465 species 1538 1 0 Clostridium ljungdahlii Clostridium perfringens 1502 0 1 1325 species Clostridium acetobutylicum 1 0 1488 445 species Clostridium beijerinckii 1520 0 1 species 1711 Clostridium kluyveri 1 0 1534 720 species 238834 1 0 565 species Clostridium estertheticum Clostridium formicaceticum 458 species 1 0 1497 Clostridium sporogenes 443 species 1 0 1509 1519 1 0 species 369 Clostridium tyrobutyricum 1493 0 1 species 754 Clostridium cellulovorans Clostridium bornimense 1 0 1216932 species 910 Clostridium novyi 1 0 1542 434 species 660 species 1 0 1548 Clostridium scatologenes Clostridium saccharoperbutylacetonicum species 1521 36745 0 1 Mordavella 21 genus 1981033 0 1 233 family 68298 3 0 1 Syntrophomonadaceae 1 1 0 129001 genus 64 0 1 86170 species 64 Syntrophothermus lipocalidus 168 genus 0 1 862 Syntrophomonas wolfei 168 species 1 0 863 1 Eubacteriaceae 4 5 0 186806 family 2980 1 Acetobacterium 0 2 33951 genus 410 1 1 0 33952 species 409 Acetobacterium woodii 36 1730 2 0 2566 genus 1 Eubacterium 2530 species 1 0 1736 Eubacterium limosum family 1418629 186803 0 25 295 Lachnospiraceae 1 21391 genus 28050 1 0 21391 species 1 0 39485 [Eubacterium] eligens 5472 genus 2719231 0 1 [Clostridium] saccharolyticum 5472 species 0 1 84030 2 0 186928 no rank 1178423 Lachnospiraceae bacterium oral taxon 500 2113 species 712991 0 1 [Eubacterium] rectale 39491 0 1 1176310 species 32 genus 20748 1506553 4 0 Lachnoclostridium 1 1 0 2608895 8914 no rank 1 0 1834196 species 8914 Lachnoclostridium sp. YL32 10066 species 0 1 1871021 Lachnoclostridium phocaeense Lachnoclostridium phytofermentans 0 1 66219 species 1736 Anaerostipes 1 genus 42781 0 2 207244 120 42661 species 649756 0 1 Anaerostipes hadrus 1 Herbinix 0 2 1663717 genus 1179 3 species 1176 0 1 1679721 Herbinix luporum genus 60526 0 2 841 13 Roseburia 1 Roseburia hominis species 60513 301301 0 1 1026 genus 2039240 0 1 1026 species 1 0 28446 Anaerotignum propionicum 698776 1 0 genus 1025 0 1 29360 species 1025 Cellulosilyticum lentocellum genus 37227 2569097 1 0 39488 0 1 species 37227 [Eubacterium] hallii 4450 genus 3 0 830 5 Butyrivibrio 1 Butyrivibrio hungatei 0 1 185008 species 2293 43305 1 0 species 2152 Butyrivibrio proteoclasticus 1 Blautia 572511 3 0 genus 22179 15 no rank 8942 1 0 2648079 Blautia sp. YL58 1 0 1796616 8942 species 0 1 1322 species 13222 Blautia hansenii genus 21907 1 0 2719313 208479 0 1 21907 species [Clostridium] bolteae family 6779 11 0 2304686 2810 no rank 0 1 2305130 1834198 1 0 species 2810 Ruminiclostridium sp. KB18 16 2 0 236752 genus 295 1 Fastidiosipila 0 1 236753 279 species Fastidiosipila sanguinis 440 genus 0 1 1637257 Mageeibacillus indolicus 440 species 884684 0 1 0 1 2304691 486 genus 1510 0 1 species 486 [Clostridium] stercorarium 2304693 1 0 genus 396 [Clostridium] thermosuccinogenes 396 species 84032 0 1 0 3 2304692 genus 1656 590 species 288965 0 1 [Clostridium] clariflavum 1 0 1677857 species 525 Herbivorax saccincola Ruminiclostridium thermocellum 1 0 1515 541 species 53 696 genus 2 0 1508657 Ruminiclostridium 1 0 1 1521 643 species [Clostridium] cellulolyticum 0 3 31984 family 488 3 1 Heliobacteriaceae 1 0 2 2697 genus 485 1 Heliobacterium 484 species 0 1 35701 Heliobacterium modesticaldum Peptostreptococcaceae 1 36957 family 9 0 186804 102 genus 382 0 1 44259 Filifactor alocis 382 species 143361 0 1 no rank 355 1411023 0 1 Peptostreptococcaceae bacterium oral taxon 929 1 0 2081703 355 species 1849828 0 1 genus 1134 1134 species 1505 0 1 Paeniclostridium sordellii Clostridioides 1 129 genus 34076 1870884 2 0 1 0 1496 33947 species Clostridioides difficile genus 389 0 1 186831 389 species 1511 0 1 Acetoanaerobium sticklandii Peptoclostridium 1 519 genus 1481960 2 0 4 515 species 0 1 1731 Peptoclostridium acidaminophilum 1 Symbiobacteriaceae 3 0 3 543349 235 family Symbiobacterium 1 2 genus 232 2733 2 0 1 0 2734 species 230 Symbiobacterium thermophilum 216572 0 3 family 2328 1 1 Oscillospiraceae Oscillibacter 1 2327 genus 459786 2 0 8 351091 1 0 species 2319 Oscillibacter valericigenes 19 6594 family 26 0 186807 Peptococcaceae 1 0 1 471826 121 genus 471827 0 1 121 species Candidatus Desulforudis audaxviator 10 1155 genus 1562 5 0 Desulfotomaculum 1 262 species 0 1 59610 Desulfotomaculum reducens Desulfotomaculum nigrificans 254 species 1 0 1565 336 species 1833852 0 1 Desulfotomaculum ferrireducens 0 1 1564 293 species Desulfotomaculum ruminis 2282740 0 1 genus 319 319 species 102134 0 1 Desulfotomaculum gibsoniae 56112 0 4 genus 1092 7 1 Dehalobacter 0 2 2635733 no rank 786 Dehalobacter sp. DCA 0 1 1147129 374 species 1 0 1131462 412 species Dehalobacter sp. CF Dehalobacter restrictus 55583 0 1 299 species genus 628 51514 1 0 628 species 0 1 51515 Dehalobacterium formicoaceticum 4 genus 292 278993 0 2 Thermincola 1 Thermincola potens 1 0 863643 288 species 1 Desulfosporosinus 0 4 79206 1050 genus 21 0 1 79209 374 species Desulfosporosinus meridiei Desulfosporosinus acidiphilus species 334 1 0 885581 species 321 1 0 1563 Desulfosporosinus orientis 36853 0 5 genus 1310 11 1 Desulfitobacterium 233055 1 0 304 species Desulfitobacterium dichloroeliminans 1 0 142877 species 227 Desulfitobacterium metallireducens 484 species 49338 1 0 Desulfitobacterium hafniense 284 species 0 1 36854 Desulfitobacterium dehalogenans 51196 1 0 genus 323 Syntrophobotulus glycolicus 51197 0 1 species 323 285 genus 0 1 2282742 Desulfotomaculum acetoxidans 1 0 58138 species 285 1 Ruminococcaceae 12 0 541000 354538 family 62 0 1 2305133 no rank 1806 Ruminococcaceae bacterium CPB6 species 1806 1572656 1 0 1 Ethanoligenens 253238 0 2 1275 genus 4 253239 1 0 species 1271 Ethanoligenens harbinense 1 Ruminococcus 1263 3 0 genus 4828 6 Ruminococcus albus 1502 species 1264 0 1 species 3320 0 1 1160721 Ruminococcus bicirculans 1 Flavonifractor 946234 0 2 genus 27755 12 Flavonifractor plautii 0 1 292800 27743 species 1 Faecalibacterium 216851 0 2 318107 genus 144 317963 species 0 1 853 Faecalibacterium prausnitzii 705 no rank 1 0 552397 29343 1 0 705 species [Clostridium] cellulosi Christensenellaceae 1 4 12514 family 990719 3 0 1 Christensenella 92 2 0 990721 12510 genus Christensenella massiliensis 12418 species 1 0 1805714 538999 8 0 21983 no rank 539000 0 1 172 family 172 genus 73918 1 0 172 species 73919 1 0 Thermaerobacter marianensis 1 Clostridiales Family XIII. Incertae Sedis 543314 0 4 2635 family 1 species 559 1 0 143393 [Eubacterium] sulci 1 Mogibacterium 1 86331 2 0 genus 2075 Mogibacterium diversum species 2074 0 1 114527 13274 genus 0 1 2717089 Mordavella sp. Marseille-P3756 2086584 1 0 13274 species 98 1392389 0 2 5902 genus 1 Intestinimonas 1297617 1 0 5804 species Intestinimonas butyriciproducens 36 0 68295 5284 order 1 1 Thermoanaerobacterales 21 543371 13 0 family 2389 1 Thermoanaerobacterales Family III. Incertae Sedis 0 9 44000 1572 genus 20 1 Caldicellulosiruptor Caldicellulosiruptor kristjanssonii species 192 1 0 52765 species 195 413889 0 1 Caldicellulosiruptor kronotskyensis Caldicellulosiruptor bescii species 213 0 1 31899 species 202 1 0 44001 Caldicellulosiruptor saccharolyticus 211 species 717609 1 0 Caldicellulosiruptor obsidiansis Caldicellulosiruptor lactoaceticus 52766 0 1 149 species species 205 55205 0 1 Caldicellulosiruptor owensensis 185 species 0 1 413888 Caldicellulosiruptor hydrothermalis 2 796 genus 3 0 28895 Thermoanaerobacterium 1 Thermoanaerobacterium thermosaccharolyticum 585 species 1517 0 1 209 species 29329 1 0 Thermoanaerobacterium xylanolyticum 2 family 206 3 0 543372 Thermoanaerobacterales Family IV. Incertae Sedis 1 3 genus 204 252965 2 0 Mahella 1 252966 0 1 201 species Mahella australiensis 227387 1 0 family 110 227388 0 1 genus 110 184064 1 0 species 110 Thermodesulfobium narugense Thermoanaerobacteraceae 1 family 2578 18 0 186814 1 3 140458 0 2 217 genus 1 Thermacetogenium 0 1 85874 214 species Thermacetogenium phaeum no rank 286 3 0 42857 2 96 genus 2 0 42837 Ammonifex 1 Ammonifex degensii 94 species 0 1 42838 genus 190 44260 1 0 1525 1 0 species 190 Moorella thermoacetica Caldanaerobacter 1 genus 201 0 2 249529 1 1 0 911092 species 200 Caldanaerobacter subterraneus genus 203 129957 0 1 Carboxydothermus hydrogenoformans 203 species 0 1 129958 1 Thermoanaerobacter 17 1754 9 0 genus 1670 Thermoanaerobacter kivui 2325 1 0 species 192 species 216 0 1 29323 Thermoanaerobacter brockii Thermoanaerobacter pseudethanolicus 216 species 0 1 496866 Thermoanaerobacter wiegelii 46354 1 0 species 201 no rank 513 0 2 2636821 0 1 399726 285 species Thermoanaerobacter sp. X514 Thermoanaerobacter sp. X513 573062 0 1 species 228 Thermoanaerobacter italicus 159 species 108150 0 1 1 0 583357 156 species Thermoanaerobacter mathranii order 1090 53433 0 7 Halanaerobiaceae 1 751 family 972 0 4 4 204 genus 1 0 32636 31909 0 1 species 204 Halothermothrix orenii genus 543 2 0 2330 Halanaerobium praevalens 2331 1 0 283 species species 260 0 1 656519 Halanaerobium hydrogeniformans 2 family 339 53434 3 0 Halobacteroidaceae 1 1 0 42417 184 genus Halobacteroides halobius 184 species 42422 0 1 genus 153 28186 1 0 species 153 1 0 28187 Acetohalobium arabaticum 1 Tissierellia 1737404 15 0 4746 class 2 0 2 1737407 418 no rank 1 Ezakiella 2 0 1582879 genus 418 16 Ezakiella massiliensis 1852374 0 1 species 402 1 Tissierellales 1737405 0 12 order 4326 12 Peptoniphilaceae 1 880 4004 family 1570339 0 9 1320 genus 1161127 0 1 1852373 0 1 species 1320 Murdochiella vaginalis 1 Anaerococcus 3 0 165779 621 genus 1 Anaerococcus prevotii 0 1 33034 296 species 1 0 1870984 species 324 Anaerococcus mediterraneensis 0 1 150022 genus 504 Finegoldia magna 1 0 1260 species 504 Parvimonas 1 1 genus 412 0 2 543311 Parvimonas micra 1 0 33033 411 species 162289 1 0 267 genus 2637196 0 1 267 no rank Peptoniphilus sp. ING2-D1G 1 0 1912856 species 267 1 Gottschalkiaceae 2 0 2042895 family 310 1 1505664 1 0 genus 309 Gottschalkia acidurici 0 1 1556 species 309 no rank 260 1 0 33974 1930845 1 0 genus 260 Ndongobacter massiliensis species 260 0 1 1871025 class 148543 418 0 91061 65 Bacilli 1 77 1385 0 254 order 72630 1 Bacillales 1 Thermoactinomycetaceae 0 4 186824 171 family 1 genus 164 2 0 1677050 14 Novibacillus 1 Novibacillus thermophilus 1471761 0 1 species 150 Laceyella 1 0 292635 genus 6 4 186823 0 9 family 1054 1 Alicyclobacillaceae 6 270 genus 29330 0 2 Alicyclobacillus 1 species 264 405212 0 1 Alicyclobacillus acidocaldarius Tumebacillus 1 genus 531 3 0 432330 4 1 0 1214604 species 271 Tumebacillus algifaecis 0 1 1903704 species 256 Tumebacillus avium 1 249 genus 0 3 1129704 Kyrpidia 1 1 0 2055160 species 131 Kyrpidia sp. EA-1 Kyrpidia tusciae 117 species 33943 1 0 88 186817 113 0 34568 family 1 Bacillaceae 1055323 1 0 304 genus species 304 1 0 33936 Aeribacillus pallidus 29331 1 0 genus 390 Amphibacillus xylanus 1449 0 1 390 species 235 genus 0 1 1906945 235 species 1426 0 1 Parageobacillus thermoglucosidasius genus 318 175304 2 0 2 Lentibacillus 1 Lentibacillus amyloliquefaciens 316 species 1472767 0 1 2 0 1329200 479 genus Fictibacillus phosphorivorans 190 species 0 1 1221500 289 species 1 0 255247 Fictibacillus arsenicus 1983 genus 15 0 129337 99 Geobacillus 1 177 species 129338 1 0 Geobacillus subterraneus 1 0 1422 136 species Geobacillus stearothermophilus 559 species group 4 0 1505648 Geobacillus thermoleovorans 1 0 33941 species 272 115 species 33938 1 0 Geobacillus thermocatenulatus species 102 1 0 169283 Geobacillus lituanicus species 70 1462 0 1 Geobacillus kaustophilus Geobacillus thermodenitrificans 0 1 33940 species 173 682 no rank 6 0 2642459 species 219 581103 1 0 Geobacillus sp. Y4.1MC1 Geobacillus sp. Y412MC61 species 58 0 1 544556 Geobacillus sp. C56-T3 92 species 691437 0 1 0 1 1233873 species 54 Geobacillus sp. GHH01 Geobacillus sp. Y412MC52 1 0 550542 species 44 Geobacillus sp. WCH70 471223 0 1 species 215 Geobacillus genomosp. 3 1921421 1 0 157 species 1 Lysinibacillus 10 0 5 400634 1840 genus 287 species 1145276 0 1 Lysinibacillus varians 806 species 1421 0 1 Lysinibacillus sphaericus Lysinibacillus fusiformis 28031 1 0 435 species no rank 302 2636778 0 1 Lysinibacillus sp. YS11 302 species 1 0 2072025 459532 0 1 192 genus 586416 1 0 species 192 Terribacillus aidingensis genus 228 351195 0 1 Salimicrobium jeotgali species 228 0 1 1230341 1362 0 58 1386 22134 genus 1 Bacillus 308 species 1 0 412384 Bacillus aryabhattai 86661 0 10 7726 species group 1396 0 1 species 2566 Bacillus cereus Bacillus cytotoxicus 580165 1 0 339 species 1428 1 0 species 2319 Bacillus thuringiensis 658666 0 1 214 species Bacillus bombysepticus 899 no rank 2750818 3 0 Bacillus sp. HBCD-sjtu 0 1 2053832 367 species 300 species 1839798 0 1 Bacillus sp. FDAARGOS_235 232 species 1892404 0 1 Bacillus sp. ABP14 Bacillus toyonensis species 193 1 0 155322 Bacillus anthracis 228 species 0 1 1392 1405 0 1 species 968 Bacillus mycoides 245 species 1413 0 1 Bacillus cellulosilyticus Bacillus horikoshii 79883 1 0 species 228 no rank 2770 19 0 185979 Bacillus sp. 275 103 species 1941347 0 1 98 species 2009331 1 0 Bacillus sp. MD-5 Bacillus sp. SJ-10 563169 0 1 species 105 Bacillus sp. SDLI1 0 1 1774743 species 167 1628753 1 0 57 species Bacillus sp. LM 4-2 Bacillus sp. WP8 217 species 756828 0 1 Bacillus sp. JS 0 1 1127744 79 species 0 1 1446792 114 species Bacillus sp. Pc3 Bacillus sp. 1s-1 1 0 2026248 species 150 328 species 1 0 666686 Bacillus sp. 1NLA3E Bacillus sp. H15-1 species 150 0 1 1856406 species 312 0 1 1565991 Bacillus sp. X1(2014) Bacillus sp. IHB B 7164 species 287 0 1 1827146 1 0 1570330 34 species Bacillus sp. BH072 1 0 98228 species 177 Bacillus sp. OxB-1 0 1 1837130 species 224 Bacillus sp. FJAT-14266 0 1 1409 62 species Bacillus sp. (in: Bacteria) Bacillus sp. Lzh-5 24 species 2049935 1 0 Bacillus sp. YP1 82 species 1574141 1 0 Bacillus weihaiensis 1547283 0 1 species 203 1 0 1408 species 922 Bacillus pumilus Bacillus gibsonii 62 species 79881 0 1 Bacillus flexus 0 1 86664 277 species 706 species 0 1 1404 Bacillus megaterium 3761 species group 653685 0 9 1938374 3 0 1228 species subgroup Bacillus siamensis 162 species 0 1 659243 Bacillus velezensis species 448 492670 1 0 Bacillus amyloliquefaciens 618 species 1 0 1390 species 52 72361 0 1 Bacillus vallismortis Bacillus licheniformis 1402 0 1 284 species Bacillus subtilis species 1347 1 0 1423 287 species 1 0 119858 Bacillus sonorensis 1 0 1648923 species 251 Bacillus paralicheniformis species 312 1 0 1452 Bacillus atrophaeus species 585 1 0 1398 Bacillus coagulans species 279 324767 0 1 Bacillus infantis Bacillus smithii 1479 1 0 species 196 Bacillus glycinifermentans 322 species 1664069 0 1 286 species 1471 0 1 Bacillus methanolicus 595 species 1 0 561879 Bacillus safensis 0 1 1792192 species group 287 species 287 1 0 293387 Bacillus altitudinis 1178537 0 1 species 185 Bacillus xiamenensis 0 1 135735 species 374 Bacillus endophyticus Bacillus beveridgei 177 species 0 1 632773 Bacillus cohnii 33932 1 0 species 278 546 genus 2675230 0 2 Bacillus kochii 859143 0 1 241 species Bacillus oceanisediminis 1 0 665099 species 305 2675234 5 0 genus 1492 79885 1 0 414 species Bacillus pseudofirmus Bacillus halodurans species 214 86665 0 1 Bacillus lehensis 300825 1 0 320 species 199441 0 1 species 267 Bacillus krulwichiae 1 0 79880 species 277 Bacillus clausii Anoxybacillus 1 genus 1140 150247 6 0 4 143 species 198467 1 0 Anoxybacillus gonensis 2639704 2 0 454 no rank Anoxybacillus sp. B2M1 1 0 1490052 217 species 1490057 1 0 species 237 Anoxybacillus sp. B7M1 33934 0 1 391 species Anoxybacillus flavithermus Anoxybacillus amylolyticus species 148 1 0 294699 735 genus 2675229 0 2 Bacillus muralis 203 species 264697 1 0 Bacillus simplex 532 species 1478 1 0 1 0 182709 490 genus species 490 1 0 182710 Oceanobacillus iheyensis 45667 0 2 432 genus 402384 1 0 218 species Halobacillus mangrovi Halobacillus halophilus 214 species 1570 1 0 3 1542 genus 7 0 84406 Virgibacillus 1 no rank 443 2 0 2620237 403957 0 1 species 200 Virgibacillus sp. SK37 243 species 0 1 1911587 Virgibacillus sp. 6R Virgibacillus pantothenticus 1473 1 0 species 237 Virgibacillus necropolis species 298 1 0 163877 species 242 1 0 2017483 Virgibacillus phasianinus Virgibacillus halodenitrificans species 319 0 1 1482 22 2487 family 186820 8 0 Listeriaceae 1 1637 6 0 genus 2142 18 1 Listeria Listeria ivanovii species 356 0 1 1638 Listeria monocytogenes 1 0 1639 902 species Listeria innocua 195 species 1642 0 1 Listeria welshimeri 377 species 1 0 1643 species 294 1640 1 0 Listeria seeligeri 323 genus 2755 1 0 1 0 2756 323 species Brochothrix thermosphacta 908 41 0 90964 11561 family 1 Staphylococcaceae 1 Macrococcus 1 0 4 69965 genus 998 0 1 69966 426 species Macrococcus caseolyticus Macrococcus canis 0 1 1855823 261 species 0 1 2619255 310 no rank Macrococcus sp. IME1552 0 1 1898474 310 species genus 267 1 0 45669 267 species 407035 1 0 Salinicoccus halodurans 33 0 1279 genus 9295 280 1 Staphylococcus species 159 1 0 70258 Staphylococcus piscifermentans 29384 1 0 species 254 Staphylococcus kloosii 246432 1 0 333 species Staphylococcus equorum Staphylococcus pseudintermedius 0 1 283734 species 425 Staphylococcus carnosus species 290 1281 0 1 species 256 1290 1 0 Staphylococcus hominis 0 1 1294 species 123 Staphylococcus muscae Staphylococcus argenteus species 204 1 0 985002 Staphylococcus epidermidis 1282 1 0 392 species 155085 1 0 species 137 Staphylococcus lutrae 193 species 0 1 70255 Staphylococcus condimenti Staphylococcus agnetis 0 1 985762 183 species species 202 1 0 1286 Staphylococcus simulans 190 species 29382 1 0 Staphylococcus cohnii 176 species 29388 0 1 Staphylococcus capitis species 198 214473 0 1 Staphylococcus nepalensis 360 species 1292 0 1 Staphylococcus warneri 459 species 45972 0 1 Staphylococcus pasteuri Staphylococcus schleiferi 237 species 0 1 1295 1 0 1284 species 131 Staphylococcus hyicus species 213 1283 0 1 Staphylococcus haemolyticus 1 0 643214 199 species Staphylococcus stepanovicii Staphylococcus aureus 0 1 1280 1327 species Staphylococcus xylosus species 312 0 1 1288 61015 0 1 281 species Staphylococcus succinus Staphylococcus simiae 1 0 308354 species 248 29385 0 1 species 292 Staphylococcus saprophyticus no rank 261 0 1 91994 Staphylococcus sp. AntiMn-1 species 261 1 0 1715860 169 species 170573 0 1 Staphylococcus pettenkoferi Staphylococcus sciuri 0 1 1296 species 315 28035 0 1 203 species Staphylococcus lugdunensis species 293 1 0 46127 Staphylococcus felis 1 Auricoccucs 2005363 0 2 genus 93 1 Auricoccus indicus species 92 0 1 1849491 1 Planococcaceae 23 0 23 186818 4955 family 1569 0 5 1261 genus 5 1 Sporosarcina Sporosarcina psychrophila 1476 1 0 species 357 1 0 1571 511 species Sporosarcina ureae 388 no rank 2 0 2647733 species 186 1 0 1930546 Sporosarcina sp. P37 Sporosarcina sp. P33 species 202 0 1 1930764 genus 2103 1372 12 0 36 Planococcus 1 139 species 0 1 200991 Planococcus rifietoensis 192421 0 1 species 317 Planococcus maritimus 1302659 0 1 species 164 Planococcus sp. L10.15 143 species 1038856 0 1 Planococcus plakortidis 2662419 0 2 298 no rank species 148 0 1 1526927 Planococcus sp. PAMC 21323 2058136 0 1 species 150 Planococcus sp. MB-3u-03 246 species 161360 1 0 Planococcus antarcticus Planococcus halocryophilus 1215089 0 1 species 209 Planococcus kocurii 143 species 1 0 1374 Planococcus faecalis 1598147 0 1 183 species species 225 1 0 414778 Planococcus donghaensis 736 genus 0 2 648800 no rank 335 2637870 0 1 2048654 0 1 species 335 Solibacillus sp. R5-41 Solibacillus silvestris 401 species 76853 1 0 genus 225 648802 1 0 species 225 241244 0 1 Rummeliibacillus stabekisii 1 0 1649 306 genus no rank 306 1 0 2644826 306 species 1750719 1 0 Kurthia sp. 11kri321 genus 301 0 1 157226 Jeotgalibacillus malaysiensis 301 species 1508404 1 0 0 1 186821 163 family 663587 0 1 163 no rank [Bacillus] selenitireducens 163 species 85683 1 0 0 8 539002 1501 no rank no rank 271 539738 1 0 genus 271 1 0 1378 2624949 0 1 no rank 271 Gemella sp. oral taxon 928 271 species 0 1 1785995 539742 0 7 1230 no rank 10 genus 1230 7 0 33986 Exiguobacterium 1 332410 0 1 species 169 Exiguobacterium sibiricum 4 0 2644629 no rank 880 206 species 360911 0 1 Exiguobacterium sp. AT1b species 253 1224749 1 0 Exiguobacterium sp. ZWU0009 1849031 0 1 species 238 Exiguobacterium sp. U13-1 Exiguobacterium sp. MH3 183 species 1399115 0 1 species 171 1 0 132920 Exiguobacterium antarcticum 1 Paenibacillaceae 186822 46 0 family 16093 55 1 Brevibacillus 55080 0 4 genus 1138 4 Brevibacillus laterosporus species 445 1 0 1465 1393 0 1 447 species Brevibacillus brevis Brevibacillus formosus 0 1 54913 species 242 3 0 2 76632 299 genus 1 Thermobacillus species 296 1 0 377615 Thermobacillus composti no rank 480 0 3 85151 1 Aneurinibacillus 55079 3 0 genus 480 1 2642329 0 1 258 no rank Aneurinibacillus sp. XH2 258 species 1450761 1 0 Aneurinibacillus soli 0 1 1500254 221 species 1 Paenibacillus 36 0 44249 14121 genus 103 0 1 2044880 species group 542 Paenibacillus riograndensis 483937 0 1 species 542 species 281 0 1 59893 Paenibacillus peoriae Paenibacillus crassostreae species 194 1763538 1 0 Paenibacillus polymyxa 1406 0 1 1009 species 1 0 172713 306 species Paenibacillus kribbensis Paenibacillus donghaensis 429 species 414771 1 0 Paenibacillus stellifer species 452 169760 0 1 Paenibacillus swuensis species 282 1178515 1 0 Paenibacillus xylanexedens 528191 0 1 299 species 185978 0 13 no rank 5172 0 1 1536771 548 species Paenibacillus sp. FSL R5-0912 471 species 0 1 1536773 Paenibacillus sp. FSL R7-0331 388 species 1 0 481743 Paenibacillus sp. Y412MC10 Paenibacillus sp. JDR-2 324057 1 0 species 461 Paenibacillus sp. lzh-N1 2069255 1 0 310 species Paenibacillus sp. FSL R7-0273 1536772 1 0 species 520 Paenibacillus sp. IHBB 10380 1566358 1 0 species 219 species 321 1 0 1536775 Paenibacillus sp. FSL H7-0737 Paenibacillus sp. 32O-W species 318 1695218 0 1 Paenibacillus sp. FSL H7-0357 species 546 1536774 1 0 species 298 1870819 0 1 Paenibacillus sp. BIHB4019 Paenibacillus sp. FSL R5-0345 species 240 0 1 1536770 species 532 1 0 1536769 Paenibacillus sp. FSL P4-0081 1462996 0 1 species 398 Paenibacillus yonginensis Paenibacillus sabinae 0 1 365617 281 species Paenibacillus larvae species 309 0 1 1464 Paenibacillus durus species 499 1 0 44251 Paenibacillus borealis 554 species 160799 1 0 0 1 189425 430 species Paenibacillus graminis Paenibacillus naphthalenovorans 300 species 162209 1 0 1616788 0 1 species 387 Paenibacillus bovis Paenibacillus ihbetae 1 0 1870820 species 394 61624 1 0 species 559 Paenibacillus mucilaginosus 295 species 159743 0 1 Paenibacillus terrae Paenibacillus odorifer 274 species 189426 0 1 species 372 1126833 1 0 Paenibacillus beijingensis 1 Lactobacillales 615 163 0 186826 75848 order 1 Leuconostocaceae 81850 17 0 6624 family 4 1 Weissella 0 6 46255 genus 1621 1 Weissella jogaejeotgali 1631871 0 1 193 species 1001 species 137591 1 0 Weissella cibaria Weissella ceti 759620 0 1 species 127 Weissella paramesenteroides 167 species 0 1 1249 Weissella koreensis 0 1 165096 species 132 46254 1 0 104 genus species 104 1247 0 1 Oenococcus oeni 8 genus 4895 0 9 1243 Leuconostoc 1 Leuconostoc kimchii 136609 1 0 species 148 Leuconostoc gelidum 1 0 1244 species 222 2685106 0 1 no rank 112 979982 0 1 112 species Leuconostoc sp. C2 Leuconostoc carnosum 135 species 1252 0 1 Leuconostoc garlicum 255248 0 1 species 104 Leuconostoc lactis 1246 0 1 113 species Leuconostoc mesenteroides 1245 0 1 485 species 0 1 33964 3568 species Leuconostoc citreum 48 18523 family 58 0 33958 Lactobacillaceae 1 0 3 2759736 genus 892 1 0 47715 species 224 Lactobacillus rhamnosus 1 0 1597 322 species Lactobacillus paracasei Lactobacillus casei 1582 0 1 346 species Lactobacillus 1 genus 4698 16 0 1578 721 Lactobacillus acidophilus 161 species 1 0 1579 423 species 0 1 1604 Lactobacillus amylovorus 2620435 0 4 no rank 516 0 1 2099788 species 179 Lactobacillus sp. CBA3605 Lactobacillus sp. D1501 species 75 2108362 0 1 Lactobacillus sp. CBA3606 2099789 0 1 species 142 Lactobacillus sp. wkB8 1545702 0 1 120 species 0 1 1596 species 372 Lactobacillus gasseri 171 species 1600 1 0 Lactobacillus acetotolerans Lactobacillus jensenii 107 species 109790 0 1 1 0 83683 136 species Lactobacillus amylolyticus 363 species 1587 1 0 Lactobacillus helveticus 326 species 1 0 1584 Lactobacillus delbrueckii Lactobacillus johnsonii 33959 1 0 species 1031 species 222 1 0 52242 Lactobacillus gallinarum Lactobacillus kefiranofaciens 1 0 267818 149 species genus 155 2767892 0 1 155 species 0 1 240427 Lactobacillus paracollinoides genus 447 0 3 2767893 species 105 1 0 152331 Lactobacillus parabuchneri Lactobacillus curieae species 139 1138822 0 1 Lactobacillus buchneri 203 species 0 1 1581 3 0 2742598 844 genus Lactobacillus mucosae 1 0 97478 species 151 1598 0 1 species 480 Lactobacillus reuteri Lactobacillus fermentum 1613 0 1 species 213 200 genus 0 1 2767890 Lactobacillus hokkaidonensis 0 1 1193095 200 species 2767842 3 0 585 genus 60520 0 1 81 species Lactobacillus paraplantarum Lactobacillus plantarum 356 species 1590 1 0 Lactobacillus pentosus 148 species 1 0 1589 genus 4332 2767881 0 2 1625 1 0 4203 species Lactobacillus sanfranciscensis 53444 1 0 129 species Lactobacillus lindneri 0 4 2767887 2249 genus Lactobacillus acidipiscis 0 1 89059 176 species 1043 species 1623 1 0 Lactobacillus ruminis species 151 1601 1 0 Lactobacillus agilis Lactobacillus salivarius 0 1 1624 879 species 2767877 0 1 127 genus Lactobacillus kunkeei 1 0 148814 species 127 genus 334 2767886 3 0 species 194 1 0 1580 Lactobacillus brevis 58 species 267363 0 1 Lactobacillus zymae 82 species 1 0 637971 Lactobacillus koreensis 6 0 2767879 1246 genus Lactobacillus allii species 209 1 0 1847728 196 species 0 1 392416 Lactobacillus crustorum Lactobacillus heilongjiangensis 0 1 1074467 species 199 190 species 1 0 1007676 Lactobacillus ginsenosidimutans Lactobacillus farciminis 277 species 1612 0 1 1602 1 0 species 175 Lactobacillus alimentarius 2767885 2 0 genus 496 0 1 28038 228 species Lactobacillus curvatus 1599 0 1 268 species Lactobacillus sakei Pediococcus 1 2 1046 genus 6 0 1253 0 1 1255 250 species Pediococcus pentosaceus Pediococcus inopinatus species 169 0 1 114090 Pediococcus claussenii 0 1 187452 species 185 51663 0 1 186 species Pediococcus damnosus 254 species group 1670797 1 0 1254 0 1 254 species Pediococcus acidilactici genus 376 1 0 2767876 species 376 0 1 1603 Lactobacillus amylophilus 2767889 2 0 genus 448 Lactobacillus backii species 232 375175 1 0 216 species 1610 1 0 Lactobacillus coryniformis 1 Streptococcaceae 1300 49 0 36430 family 337 2390 genus 1357 0 5 4 Lactococcus 1 species 230 0 1 1364 Lactococcus piscium 1366 0 1 species 156 Lactococcus raffinolactis species 460 0 1 1363 Lactococcus garvieae Lactococcus lactis 1358 0 1 species 1540 1877 43 0 1301 33703 genus 1 Streptococcus 1 0 28037 766 species Streptococcus mitis 1811193 1 0 species 133 Streptococcus pantholopis 315405 1 0 species 683 Streptococcus gallolyticus 819 species group 119603 0 2 Streptococcus dysgalactiae 1334 0 1 species 280 Streptococcus equi 1 0 1336 species 539 species 407 0 1 1348 Streptococcus parauberis species 192 1814128 1 0 Streptococcus halotolerans Streptococcus pluranimalium 177 species 82348 0 1 Streptococcus pseudopneumoniae 190 species 257758 0 1 1308 0 1 species 637 Streptococcus thermophilus Streptococcus macedonicus 0 1 59310 234 species Streptococcus uberis species 260 1349 1 0 786 species 0 1 1313 Streptococcus pneumoniae 2835 species 1311 0 1 Streptococcus agalactiae Streptococcus cristatus species 358 45634 1 0 species 1539 1 0 197614 Streptococcus pasteurianus Streptococcus gordonii 0 1 1302 species 552 Streptococcus infantarius 0 1 102684 1190 species 2608887 7 0 1483 no rank 203 species 0 1 712633 Streptococcus sp. oral taxon 431 Streptococcus sp. I-P16 144 species 0 1 1156433 Streptococcus sp. 'group B' 227 species 1319 1 0 Streptococcus sp. I-G2 species 145 0 1 1156431 Streptococcus sp. A12 158 species 1759399 0 1 152 species 1902136 0 1 Streptococcus sp. NPS 308 Streptococcus sp. FDAARGOS_192 1 0 1839799 species 454 0 1 1318 731 species Streptococcus parasanguinis Streptococcus equinus 0 1 1335 336 species 293 species 1326 1 0 Streptococcus acidominimus Streptococcus marmotae 1825069 0 1 180 species 0 1 400065 157 species Streptococcus merionis Streptococcus oralis 1 0 1303 699 species 671232 0 3 species group 4347 Streptococcus intermedius 1338 1 0 858 species 76860 1 0 species 1054 Streptococcus constellatus Streptococcus anginosus 1328 0 1 2435 species Streptococcus iniae species 393 1346 1 0 Streptococcus pyogenes species 866 0 1 1314 0 1 1888195 197 species Streptococcus himalayensis species 371 1309 1 0 Streptococcus mutans 7236 species 1 0 1307 Streptococcus suis 0 1 150055 species 1115 Streptococcus lutetiensis Streptococcus sanguinis 231 species 0 1 1305 1433 species 1304 0 1 Streptococcus salivarius 4 0 10 186828 family 1737 1 Carnobacteriaceae 1 0 191769 278 genus 278 no rank 1 0 2632303 Marinilactibacillus sp. 15R 1911586 0 1 278 species 1 Carnobacterium 5 2747 0 5 genus 1032 2751 0 1 species 283 Carnobacterium maltaromaticum 230 species 0 1 147709 Carnobacterium inhibens no rank 514 257487 2 0 Carnobacterium sp. 17-4 307 species 208596 1 0 Carnobacterium sp. CP1 207 species 1564681 0 1 1 Jeotgalibaca 3 0 1470540 423 genus 2 708126 1 0 species 143 Jeotgalibaca dankookensis 2621505 1 0 no rank 278 Jeotgalibaca sp. PTS2502 1903686 1 0 species 278 Enterococcaceae 1 22 family 10194 81852 19 0 221 genus 33969 1 0 Melissococcus plutonius 1 0 33970 species 221 1033 12 0 1350 genus 8517 1 Enterococcus 1 0 1352 3570 species Enterococcus faecium Enterococcus hirae 1354 0 1 361 species 3 0 2608891 601 no rank 170 species 1 0 2060306 Enterococcus sp. FDAARGOS_163 Enterococcus sp. FDAARGOS_375 0 1 2060307 species 261 Enterococcus sp. CR-Ec1 1 0 2057791 170 species Enterococcus casseliflavus 187 species 0 1 37734 1 0 1351 species 1287 Enterococcus faecalis Enterococcus thailandicus 417368 0 1 244 species 0 1 53346 357 species Enterococcus mundtii species 476 0 1 53345 Enterococcus durans species 401 0 1 2005703 Enterococcus wangshanyuanii Tetragenococcus 1 1 867 genus 0 2 51668 Tetragenococcus halophilus 0 1 51669 866 species 0 3 2737 genus 567 1 1 Vagococcus Vagococcus teuberi 0 1 519472 360 species Vagococcus penaei 206 species 633807 1 0 no rank 171 0 1 263855 Lactobacillales bacterium species 171 1993866 1 0 Aerococcaceae 1 1554 family 186827 8 0 1 7 0 1375 1553 genus 11 1 Aerococcus 234 species 1 0 1377 Aerococcus viridans Aerococcus urinaeequi species 311 51665 0 1 1376 1 0 species 201 Aerococcus urinae Aerococcus sanguinicola species 190 0 1 119206 species 187 128944 1 0 Aerococcus urinaehominis 1 0 87541 419 species Aerococcus christensenii 0 9 508458 phylum 678 8 9 0 649775 class 678 1 Synergistia 1 Synergistales 2 649776 0 8 order 670 9 7 0 649777 family 668 1 Synergistaceae 34 genus 49894 0 1 Acetomicrobium mobile 1 0 97477 34 species 1 0 81466 genus 87 species 87 81468 0 1 Aminobacterium colombiense 1 0 81461 genus 60 1 0 81462 60 species Thermanaerovibrio acidaminovorans 42 genus 336260 1 0 0 1 336261 species 42 Thermovirga lienii 2 genus 436 508459 0 2 Cloacibacillus 1 Cloacibacillus porcorum 1197717 0 1 434 species 1 0 2138240 63 phylum 63 class 1 0 2138243 1 0 2138246 63 order 63 family 0 1 2138247 63 genus 68335 1 0 0 1 35786 63 species Coprothermobacter proteolyticus phylum 640 40117 0 11 3 11 0 203693 class 640 1 Nitrospira Nitrospirales 1 637 order 10 0 189778 6 3 189779 0 9 family 631 1 Nitrospiraceae 300 genus 1234 0 4 Candidatus Nitrospira inopinata species 40 1715989 0 1 Nitrospira defluvii species 76 330214 0 1 Nitrospira moscoviensis 1 0 42253 101 species species 83 1325564 1 0 Nitrospira japonica 171 genus 3 0 179 655606 1 0 62 species group species 62 1 0 180 Leptospirillum ferrooxidans 50 species group 0 1 261385 Leptospirillum sp. Group II 'CF-1' 50 species 0 1 1660083 59 species group 0 1 261386 1 0 178606 59 species Leptospirillum ferriphilum genus 157 28261 1 0 Thermodesulfovibrio yellowstonii 157 species 28262 0 1 200930 0 7 phylum 660 1 Deferribacteres 1 0 7 68337 660 class order 659 191393 0 6 family 659 0 6 191394 1 Deferribacteraceae 1 1 117999 0 2 genus 223 1 Denitrovibrio 118000 1 0 222 species Denitrovibrio acetiphilus 135 genus 2351 1 0 Flexistipes sinusarabici 135 species 1 0 2352 0 1 53572 190 genus Deferribacter desulfuricans species 190 197162 1 0 110 genus 1 0 545865 Calditerrivibrio nitroreducens 477976 0 1 species 110 phylum 327 0 5 74152 59 class 1 0 641853 641854 0 1 59 order 59 family 0 1 641876 59 genus 423604 0 1 423605 0 1 59 species Elusimicrobium minutum 447830 0 3 202 class order 202 3 0 1783344 Endomicrobiaceae 1 family 202 1783343 0 3 1 201 genus 2 0 1408194 species 70 0 1 1408204 Candidatus Endomicrobium trichonymphae Endomicrobium proavitum 0 1 1408281 species 131 no rank 66 1 0 99260 species 66 167965 0 1 uncultured Termite group 1 bacterium 0 3 2323 121 no rank clade 121 3 0 1783234 clade 103 0 2 95901 class 103 2 0 2497643 2497644 0 2 order 103 2 0 2497645 family 103 Candidatus Babela 1 1 genus 103 1551504 0 2 102 species 1 0 673862 Candidatus Babela massiliensis 95818 1 0 phylum 18 18 no rank 1895827 0 1 species 18 2056494 0 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 73 clade 2498710 0 2 73 phylum 0 2 67814 693071 0 2 class 73 2 0 693072 73 order 2 0 693073 family 73 1 Caldisericum 2 0 693074 genus 73 3 Caldisericum exile species 70 1 0 693075 200783 0 19 phylum 1088 19 0 187857 class 1088 3 0 1485951 151 order 558314 3 0 151 family genus 119 0 1 64159 1 0 64160 119 species Desulfurobacterium thermolithotrophum genus 32 171868 2 0 1 Thermovibrio 1 Thermovibrio ammonificans 1 0 228745 species 31 32069 0 16 order 937 1 0 90150 no rank 62 62 genus 1 0 412592 Thermosulfidibacter takaii 0 1 412593 species 62 1 family 528 64898 11 0 Aquificaceae 1 2713 1 0 genus 29 63363 1 0 29 species Aquifex aeolicus genus 24 0 1 939 Hydrogenobacter thermophilus 24 species 0 1 940 genus 47 2 0 75905 Thermocrinis albus 136094 0 1 18 species Thermocrinis ruber 29 species 0 1 75906 Hydrogenobaculum 1 427 genus 168657 0 6 8 419 no rank 5 0 2622382 87 species 0 1 547145 Hydrogenobaculum sp. SHO Hydrogenobaculum sp. SN 1 0 547146 87 species 380749 1 0 species 71 Hydrogenobaculum sp. Y04AAS1 species 87 547144 1 0 Hydrogenobaculum sp. HO Hydrogenobaculum sp. 3684 87 species 0 1 547143 1 Hydrogenothermaceae 3 0 4 224027 347 family genus 266 212790 0 2 Sulfurihydrogenibium azorense 309806 0 1 species 88 no rank 178 0 1 2619248 Sulfurihydrogenibium sp. YO3AOP1 species 178 436114 1 0 78 genus 182899 1 0 Persephonella marina 78 species 0 1 309805 0 1889 1224 phylum 276159 71 1 Proteobacteria 1807140 6 0 class 309 order 309 6 0 225057 3 Acidithiobacillales 1 1 Acidithiobacillaceae 1 225058 0 5 family 306 genus 305 119977 4 0 3 Acidithiobacillus 1 Acidithiobacillus ferrivorans 102 species 160808 0 1 species 110 0 1 920 Acidithiobacillus ferrooxidans 33059 0 1 90 species Acidithiobacillus caldus 1 Alphaproteobacteria 28211 515 0 48142 class 112 235 200 0 356 order 20359 1 Rhizobiales 1 Rhizobiaceae 82115 0 53 family 6770 59 5005 no rank 0 34 227290 230 379 26 0 3429 genus 1 Rhizobium 254 species 396 0 1 Rhizobium phaseoli 1412 no rank 2613769 20 0 Rhizobium sp. NT-26 1125847 1 0 species 89 Rhizobium sp. N741 2 species 1 0 1703967 1 0 424182 123 species Rhizobium sp. IRBG74 0 1 1301032 species 70 Rhizobium sp. IE4771 1 0 1703964 species 1 Rhizobium sp. N621 Rhizobium sp. N6212 species 1 1703965 0 1 Rhizobium sp. S41 0 1 1869170 102 species 110 species 2020312 1 0 Rhizobium sp. CIAT894 Rhizobium sp. Y9 123 species 0 1 1914541 Rhizobium sp. N324 1703969 0 1 172 species Rhizobium sp. NXC14 1981173 1 0 87 species Rhizobium sp. N731 1703966 1 0 16 species species 125 0 1 2048897 Rhizobium sp. NXC24 Rhizobium sp. N1314 species 16 0 1 1703961 Rhizobium sp. TAL182 species 18 0 1 2020313 Rhizobium sp. N113 1 species 1 0 1703960 Rhizobium sp. Kim5 2020311 1 0 species 63 species 2 1703962 1 0 Rhizobium sp. N1341 species 151 1 0 1571470 Rhizobium sp. ACO-34A 2028343 0 1 species 140 Rhizobium sp. 10195 384 1 0 species 813 Rhizobium leguminosarum Rhizobium gallicum species 199 56730 1 0 172 species 398 0 1 Rhizobium tropici 29449 0 1 species 349 Rhizobium etli 357 7 0 genus 1288 18 1 Agrobacterium 373 0 1 208 species Agrobacterium vitis Agrobacterium rhizogenes 359 0 1 species 157 no rank 228 0 2 2632611 species 99 1842536 0 1 Agrobacterium sp. RAC06 Agrobacterium sp. H13-3 861208 1 0 129 species 677 species group 0 2 1183400 1 0 1176649 131 species Agrobacterium fabrum Agrobacterium tumefaciens 546 species 358 0 1 1525371 1 0 genus 288 288 species 0 1 399 Neorhizobium galegae Shinella 1 genus 197 323620 2 0 11 no rank 186 0 1 2643062 Shinella sp. HZN7 species 186 0 1 879274 Liberibacter 1 1 genus 180 0 6 34019 17 species 1 0 556287 Candidatus Liberibacter solanacearum 81 species 0 1 309868 Candidatus Liberibacter americanus Candidatus Liberibacter asiaticus 34021 0 1 species 18 species 45 34020 0 1 Candidatus Liberibacter africanus Liberibacter crescens 1273132 1 0 18 species no rank 1329 227292 0 10 106591 3 0 271 genus 1 1 Ensifer species 145 1 0 106592 Ensifer adhaerens Ensifer sojae 1 0 716925 species 125 genus 1058 7 0 28105 19 Sinorhizobium 1 Sinorhizobium medicae 0 1 110321 species 94 194963 0 1 species 103 Sinorhizobium americanum 2613772 2 0 no rank 228 species 151 1 0 1842534 Sinorhizobium sp. RAC02 Sinorhizobium sp. CCBAU 05631 1 0 794846 species 77 Sinorhizobium meliloti 0 1 382 369 species 245 species group 663276 0 1 Sinorhizobium fredii species 245 0 1 380 1 Methylobacteriaceae 119045 0 15 1875 family 22 Microvirga 1 9 genus 165 186650 0 2 1882682 0 1 156 species Microvirga ossetica 681 genus 0 3 2282523 386 species 1 0 408 Methylobacterium extorquens 0 1 29429 96 species Methylobacterium zatmanii Methylobacterium populi 199 species 1 0 223967 9 0 407 genus 1007 36 1 Methylobacterium 334852 0 1 95 species Methylobacterium oryzae no rank 360 2615210 3 0 Methylobacterium sp. AMS5 0 1 925818 89 species Methylobacterium sp. 4-46 146 species 0 1 426117 0 1 1479019 125 species Methylobacterium sp. C1 1 0 114616 126 species Methylobacterium nodulans Methylobacterium aquaticum species 161 0 1 270351 species 78 1 0 418223 Methylobacterium phyllosphaerae 151 species 1 0 31998 Methylobacterium radiotolerans 1 Bartonellaceae 18 0 772 1334 family 7 Bartonella 1 25 genus 1327 17 0 773 Bartonella clarridgeiae 42 species 56426 0 1 1 0 1686310 species 201 Bartonella apis Bartonella vinsonii species 49 33047 1 0 Bartonella grahamii species 35 0 1 33045 Bartonella quintana 1 0 803 133 species Bartonella ancashensis species 102 1318743 1 0 2645622 0 6 304 no rank Bartonella sp. A1379B 1 0 1933910 species 39 Bartonella sp. JB63 1933907 0 1 species 64 Bartonella sp. 1-1C 0 1 515256 species 32 Bartonella sp. JB15 64 species 1933906 1 0 Bartonella sp. Raccoon60 1933912 1 0 species 35 70 species 1933904 1 0 Bartonella sp. WD16.2 265 species 0 1 774 Bartonella bacilliformis 47 species 0 1 38323 Bartonella henselae Bartonella tribocorum species 74 1 0 85701 Bartonella australis 50 species 0 1 388640 13 0 17 45401 1393 family 1 Hyphomicrobiaceae 1082930 0 1 99 genus 1 0 531813 species 99 Pelagibacterium halotolerans Hyphomicrobium 1 3 genus 453 81 4 0 Hyphomicrobium denitrificans 129 species 0 1 53399 156 species 1427356 1 0 Hyphomicrobium nitrativorans 165 no rank 2619925 1 0 165 species 0 1 717785 Hyphomicrobium sp. MC1 genus 61 119044 2 0 2 Filomicrobium 1 1608628 1 0 species 59 Candidatus Filomicrobium marinum Devosia 1 5 418 genus 46913 4 0 3 0 196773 413 no rank Devosia sp. H5989 species 106 1643450 1 0 species 88 1 0 2083786 Devosia sp. I507 Devosia sp. A16 species 219 1736675 0 1 1 Blastochloris 3 59282 0 2 genus 104 0 1 1079 species 101 Blastochloris viridis 0 2 29407 genus 147 11 1 Rhodoplanes 136 no rank 2619116 0 1 1 0 674703 136 species Rhodoplanes sp. Z2-YC6860 98 genus 0 1 1068 Rhodomicrobium vannielii 1069 1 0 98 species Methylocystaceae 1 1 family 270 0 5 31993 0 2 133 genus 132 1 0 2625913 no rank 72 Methylocystis sp. SC2 species 72 187303 1 0 1 0 655015 60 species Methylocystis bryophila 1 Methylosinus 2 0 425 genus 137 1 Methylosinus trichosporium 136 species 426 0 1 2 0 119043 101 family 3 101 genus 0 2 256616 Parvibaculum 1 98 species 0 1 256618 Parvibaculum lavamentivorans 0 7 335928 536 family 8 1 Xanthobacteraceae 1 2 0 279 genus 196 1 Xanthobacter 1 0 280 species 195 Xanthobacter autotrophicus Azorhizobium 1 191 genus 6 2 0 3 Azorhizobium caulinodans 7 1 0 species 188 1 Starkeya 2 0 152053 genus 141 5 Starkeya novella 136 species 0 1 921 1 Phyllobacteriaceae 69277 0 18 family 2004 7 133 genus 28100 1 0 1 0 1867719 species 133 Phyllobacterium zundukense 35 1164 genus 0 9 68287 Mesorhizobium 1 Mesorhizobium ciceri 39645 0 1 species 169 0 1 2066070 126 species Mesorhizobium japonicum Mesorhizobium sp. B7 0 1 1670800 116 species species 163 1 0 381 Mesorhizobium loti 1 0 325217 132 no rank 278153 1 0 species 132 Mesorhizobium sp. WSM1497 Mesorhizobium amorphae species 139 0 1 71433 Mesorhizobium opportunistum 129 species 1 0 593909 Mesorhizobium australicum 1 0 536018 155 species 2 83 genus 2 0 245876 Nitratireductor 1 species 81 0 1 472175 Nitratireductor basaltis 281 genus 1 0 449972 0 1 2643807 281 no rank Chelativorans sp. BNC1 0 1 266779 species 281 Aminobacter 1 208 genus 0 2 31988 5 Aminobacter aminovorans species 203 0 1 83263 Hoeflea 1 1 genus 128 0 2 274591 no rank 127 0 1 2614931 1620421 1 0 127 species Hoeflea sp. IMCC20628 6 0 119042 445 no rank 3 158 genus 0 2 1572860 Hartmannibacter 1 Hartmannibacter diazotrophicus 0 1 1482074 155 species 132 genus 0 2 1484898 2 Methyloceanibacter 1 Methyloceanibacter caenitepidi 130 species 0 1 1384459 12 2 0 1734920 genus 155 1 Pseudorhodoplanes Pseudorhodoplanes sinuspersici 1235591 1 0 species 143 1 Aurantimonadaceae 2 0 7 255475 684 family 136 genus 414371 2 0 3 Aureimonas 1 0 1 2615206 133 no rank 133 species 1349819 1 0 Aureimonas sp. AU20 293088 0 4 546 genus 16 1 Martelella 143 species 0 1 293089 Martelella mediterranea 0 1 1486262 species 215 Martelella endophytica 2629616 0 1 172 no rank 172 species 686597 1 0 Martelella sp. AD-3 1 Bradyrhizobiaceae 24 0 41294 family 3254 56 Bosea 1 genus 501 5 0 85413 16 1 0 1526658 species 121 Bosea vaviloviae no rank 364 0 3 2653178 Bosea sp. PAMC 26642 1792307 1 0 species 97 1 0 1842539 species 96 Bosea sp. RAC05 0 1 2015316 171 species Bosea sp. AS-1 Bradyrhizobium 1 55 genus 1631 11 0 374 Bradyrhizobium oligotrophicum 175 species 44255 1 0 208 species 1 0 1355477 Bradyrhizobium diazoefficiens species 224 1 0 375 Bradyrhizobium japonicum 0 6 2631580 no rank 851 Bradyrhizobium sp. 1 0 376 species 133 151 species 2057741 1 0 Bradyrhizobium sp. SK17 species 158 1 0 115808 Bradyrhizobium sp. ORS 285 Bradyrhizobium sp. ORS 278 species 116 0 1 114615 Bradyrhizobium sp. CCGE-LA001 0 1 1223566 122 species Bradyrhizobium sp. BTAi1 171 species 288000 0 1 0 1 1274631 species 118 Bradyrhizobium icense 1073 2 0 genus 771 15 1 Rhodopseudomonas 756 species 1076 0 1 Rhodopseudomonas palustris 40136 0 1 70 genus species 70 1 0 40137 Oligotropha carboxidovorans 0 1 1649510 genus 62 1333996 0 1 species 62 Variibacter gotjawalensis 163 genus 911 0 3 2 Nitrobacter 1 species 104 912 0 1 Nitrobacter hamburgensis 57 species 1 0 913 Nitrobacter winogradskyi 1 Brucellaceae 11 118882 20 0 family 1028 1 Ochrobactrum 0 5 528 606 genus 8 Ochrobactrum anthropi species 125 1 0 529 species 161 271865 0 1 Ochrobactrum sp. A44 170 species 1 0 571256 Ochrobactrum pituitosum Ochrobactrum pseudogrignonense 1 0 419475 species 142 genus 411 234 14 0 206 Brucella 1 Brucella suis 8 species 29461 0 1 0 1 444163 3 species Brucella microti 1 0 120577 17 species Brucella ceti 36855 0 1 species 17 Brucella canis Brucella melitensis species 3 29459 1 0 Brucella ovis 236 0 1 species 3 2632610 0 4 108 no rank Brucella sp. 09RB8910 1 0 1844051 19 species Brucella sp. 141012304 1885919 1 0 33 species Brucella sp. 09RB8471 species 54 1 0 1149952 2 species 1891098 0 1 Brucella sp. 2002734562 6 species 1 0 235 Brucella abortus Brucella pinnipedialis species 18 120576 0 1 Brucella vulpis species 22 1 0 981386 6 family 238 4 0 2036754 Chelatococcaceae 1 11 0 3 28209 genus 232 1 Chelatococcus Chelatococcus daeguensis 444444 0 1 species 89 132 no rank 2638111 1 0 1702325 1 0 132 species Chelatococcus sp. CO-6 family 192 45404 3 0 532 1 0 102 genus 0 1 533 102 species Beijerinckia indica Methylocella 1 3 genus 90 2 0 120652 87 species 1 0 199596 Methylocella silvestris 1191478 1 0 order 121 1191479 0 1 family 121 1 0 162171 genus 121 121 species 1124597 1 0 Magnetococcus marinus order 230 1921002 4 0 44746 1 0 family 62 1 0 204454 62 no rank 0 1 86106 62 species endosymbiont of Acanthamoeba sp. UWC8 1777752 0 1 family 80 1521255 1 0 genus 80 Candidatus Paracaedibacter acanthamoebae 91604 1 0 species 80 1 Caedimonadaceae 2100208 0 2 88 family 3 1509243 0 1 genus 85 85 species 1509244 0 1 Candidatus Nucleicultrix amoebiphila 10 order 1719 204458 0 19 Caulobacterales 1 1 Caulobacteraceae 30 76892 18 0 family 1709 124 genus 1 0 20 Phenylobacterium zucineum species 124 284016 0 1 47 no rank 0 1 81440 47 species 1759059 1 0 Caulobacteraceae bacterium OTSz_A_272 Caulobacter 1 18 745 genus 75 6 0 155892 1 0 species 201 Caulobacter vibrioides 109 species 69666 0 1 Caulobacter mirabilis Caulobacter henricii 69395 0 1 species 109 Caulobacter segnis 1 0 88688 species 129 179 no rank 2648921 1 0 179 species 366602 1 0 Caulobacter sp. K31 1 Asticcacaulis 1 76890 0 2 genus 139 Asticcacaulis excentricus 0 1 78587 species 138 Brevundimonas 1 14 624 genus 41275 7 0 Brevundimonas naejangsanensis 0 1 588932 76 species no rank 305 0 3 2622653 Brevundimonas sp. GW460-12-10-14-LB2 species 104 1827469 0 1 0 1 1938605 species 130 Brevundimonas sp. LM2 Brevundimonas sp. DS20 71 species 0 1 1532555 Brevundimonas vesicularis 0 1 41276 112 species Brevundimonas subvibrioides species 117 74313 1 0 Rhodobacterales 1 61 8807 order 204455 0 81 0 80 31989 family 8746 162 1 Rhodobacteraceae 0 1 159345 genus 74 159346 1 0 74 species Roseibacterium elongatum genus 1217 5 0 302485 14 Phaeobacter 1 Phaeobacter piscinae 0 1 1580596 species 451 360 species 0 1 221822 Phaeobacter inhibens Phaeobacter gallaeciensis 281 species 60890 0 1 111 species 1844006 0 1 Phaeobacter porticola 74032 1 0 genus 133 species 133 1 0 74033 Antarctobacter heliothermus 299261 1 0 genus 126 Tateyamaria omphalii 299262 1 0 126 species genus 180 2 0 2433 Roseobacter litoralis 97 species 1 0 42443 83 species 1 0 2434 Roseobacter denitrificans 1 Marinovum 0 2 367771 150 genus 4 146 species 0 1 42444 Marinovum algicola 8 663 genus 1060 0 5 Rhodobacter 1 2 0 196779 199 no rank species 111 0 1 2033869 Rhodobacter sp. CZR27 88 species 1850250 1 0 Rhodobacter sp. LPB0142 Rhodobacter sphaeroides species 318 0 1 1063 1 0 1061 species 138 Rhodobacter capsulatus 1 Sulfitobacter 2 60136 0 3 239 genus species 114 1402135 1 0 Sulfitobacter pseudonitzschiae 1 0 196795 no rank 123 1 0 1917485 species 123 Sulfitobacter sp. AM1-D1 74030 0 2 genus 243 2 1 Roseovarius Roseovarius mucosus species 241 1 0 215743 157 genus 0 2 191028 1 Leisingera 1 133924 0 1 156 species Leisingera methylohalidivorans 129 genus 1649279 0 1 Ruegeria mobilis 1 0 379347 species 129 1 genus 246 0 3 97050 Ruegeria 1 Ruegeria pomeroyi 0 1 89184 131 species no rank 114 2625375 0 1 Ruegeria sp. TM1040 292414 1 0 114 species 58842 0 1 genus 180 180 no rank 2624628 1 0 0 1 2009329 species 180 Sagittula sp. P11 19 265 9 0 genus 1097 1 Paracoccus no rank 115 1 0 246570 115 species 1529068 1 0 Paracoccus sp. BM15 0 1 266 species 153 Paracoccus denitrificans Paracoccus yeei species 178 147645 1 0 202 species 0 1 1077935 Paracoccus zhejiangensis Paracoccus aminovorans 141 species 0 1 34004 Paracoccus contaminans 0 1 1945662 109 species Paracoccus sp. CBA4604 82 species 0 1 2065379 Paracoccus aminophilus species 98 0 1 34003 Thioclava 1 1 genus 67 2 0 285107 Thioclava nitratireducens species 66 1915078 1 0 1 Celeribacter 1 875170 0 5 genus 450 1 0 1411902 133 species Celeribacter manganoxidans species 96 1 0 1397108 Celeribacter marinus 0 1 1208324 123 species Celeribacter indicus Celeribacter ethanolicus 1758178 1 0 species 97 genus 171 2 0 1609958 1 Confluentimicrobium 1 2643318 0 1 170 no rank Confluentimicrobium sp. EMB200-NS6 species 170 1 0 1609966 genus 66 1759396 0 1 no rank 66 1 0 2622455 1920883 1 0 species 66 Marivivens sp. JLT3646 1 Pelagibaca 1 360528 0 2 158 genus Pelagibaca abyssi 1 0 1250539 species 157 1 Ketogulonicigenium 8 92944 3 0 genus 261 Ketogulonicigenium robustum 163 species 92947 0 1 1 0 92945 species 90 Ketogulonicigenium vulgare 74 genus 1 0 1284657 74 species 0 1 1284658 Planktomarina temperata 263377 2 0 genus 313 2640570 0 1 149 no rank 1792508 1 0 species 149 Yangia sp. CCB-MM3 1229727 0 1 164 species Thiobacimonas profunda 1 Rhodovulum 0 4 34008 348 genus 2 0 1 35806 species 186 Rhodovulum sulfidophilum 2631432 0 2 160 no rank 66 species 1 0 308754 Rhodovulum sp. MB263 Rhodovulum sp. P5 1564506 1 0 species 94 1 Octadecabacter 1 53945 0 4 260 genus Octadecabacter temperatus species 90 0 1 1458307 81 species 1 0 53946 Octadecabacter arcticus Octadecabacter antarcticus 0 1 1217908 88 species 0 1 309512 71 genus Dinoroseobacter shibae 0 1 215813 species 71 Labrenzia 1 genus 538 0 4 478070 7 Labrenzia aggregata 183 species 1 0 187304 2648686 0 2 348 no rank 1 0 2021862 species 163 Labrenzia sp. VG12 1 0 1674922 185 species Labrenzia sp. CP4 64 genus 1579315 0 2 2 Halocynthiibacter 1 Halocynthiibacter arcticus species 62 0 1 1579316 genus 170 2211641 1 0 Loktanella vestfoldensis 245188 1 0 170 species 0 2 58840 no rank 186 Rhodobacteraceae bacterium QY30 2033435 0 1 93 species species 93 1904441 0 1 Rhodobacteraceae bacterium 1097466 0 1 128 genus Defluviimonas alba 128 species 0 1 1335048 genus 90 119541 0 1 90 species 441209 0 1 Rhodobaca barguzinensis 2 genus 79 2 0 188905 Jannaschia 1 77 no rank 0 1 2645469 species 77 0 1 290400 Jannaschia sp. CCS1 256 genus 1 0 227873 Pannonibacter phragmitetus species 256 1 0 121719 Rickettsiales 1 3 1488 order 766 0 49 1 family 888 775 0 26 Rickettsiaceae 1 tribe 851 33988 0 24 1 Rickettsia 130 780 0 23 772 genus 114295 0 1 84 no rank Rickettsia endosymbiont of Bemisia tabaci species 84 0 1 337479 355 species group 17 0 114277 Rickettsia rickettsii 783 1 0 9 species Rickettsia africae 0 1 35788 8 species Rickettsia conorii 781 0 1 species 12 Rickettsia rhipicephali 12 species 33992 0 1 Rickettsia massiliae species 24 35791 0 1 species 18 1 0 1105106 Rickettsia philipii 48 species 0 1 787 Rickettsia australis 42862 0 1 species 68 Rickettsia felis Rickettsia slovaca 1 0 35794 species 10 Rickettsia parkeri 35792 0 1 species 10 Rickettsia peacockii 47589 1 0 31 species species 20 0 1 33989 Rickettsia amblyommatis Rickettsia japonica 1 0 35790 species 9 Rickettsia monacensis 1 0 109232 23 species species 3 226665 1 0 Rickettsia heilongjiangensis Rickettsia akari species 40 786 0 1 Rickettsia montanensis 10 species 1 0 33991 species group 82 2 0 114292 Rickettsia typhi 60 species 785 1 0 species 22 782 0 1 Rickettsia prowazekii 1129742 2 0 121 species group Rickettsia bellii 83 species 33990 0 1 788 0 1 species 38 Rickettsia canadensis 69474 0 1 79 genus 79 species 784 1 0 Orientia tsutsugamushi 1 0 2115980 genus 36 Candidatus Phycorickettsia trachydisci 36 species 2115978 1 0 0 2 1328881 family 50 4 1 Candidatus Midichloriaceae 46 genus 411566 0 1 0 1 234827 46 species Candidatus Midichloria mitochondrii family 458 942 19 0 1 genus 210 0 6 943 Ehrlichia 1 179 species group 106178 4 0 species 25 1 0 35795 Ehrlichia muris Ehrlichia chaffeensis 1 0 945 37 species 779 1 0 species 68 Ehrlichia ruminantium Ehrlichia canis 1 0 944 49 species 30 no rank 1 0 106181 30 species 391036 1 0 Ehrlichia sp. HF 146 tribe 7 0 952 146 genus 0 7 953 no rank 146 7 0 2640676 species 10 80849 0 1 Wolbachia endosymbiont of Brugia malayi 41 species 1 0 77038 Wolbachia endosymbiont of Drosophila simulans species 21 66084 0 1 Wolbachia sp. wRi Wolbachia endosymbiont of Drosophila melanogaster species 25 0 1 163164 Wolbachia endosymbiont of Onchocerca ochengi 100901 1 0 19 species 0 1 246273 11 species Wolbachia endosymbiont of Cimex lectularius Wolbachia endosymbiont of Onchocerca volvulus 19 species 1 0 77551 40 genus 33993 0 3 Neorickettsia sennetsu species 8 951 0 1 Neorickettsia helminthoeca 33994 1 0 14 species Neorickettsia risticii 0 1 950 species 18 768 3 0 genus 62 0 1 106179 29 species group Anaplasma phagocytophilum 1 0 948 29 species Anaplasma marginale 770 0 1 23 species 769 1 0 species 10 Anaplasma centrale 89 no rank 1699067 1 0 1528098 0 1 species 89 Rickettsiales bacterium Ac37b 320 order 0 6 54526 0 4 1655514 228 family no rank 130 1655516 0 2 65 species 744985 1 0 alpha proteobacterium HIMB59 0 1 859653 65 species alpha proteobacterium HIMB5 198251 2 0 98 genus 60 species 198252 1 0 Candidatus Pelagibacter ubique 38 no rank 2647897 1 0 1 0 1002672 38 species Candidatus Pelagibacter sp. IMCC9063 Candidatus Fonsibacter 1 1 92 genus 2045213 2 0 1 0 1925548 91 species Candidatus Fonsibacter ubiquis 1 Sphingomonadales 50 0 80 204457 order 6633 22 0 335929 family 1480 22 1 Erythrobacteraceae 85 genus 2800686 2 0 species 44 0 1 692370 Altererythrobacter dongtanensis Altererythrobacter mangrovi 1 0 1982042 species 41 Altererythrobacter 1 3 280 genus 361177 4 0 1 0 361183 84 species Altererythrobacter epoxidivorans species 75 1 0 476157 Altererythrobacter ishigakiensis Altererythrobacter atlanticus 1267766 0 1 118 species 0 6 2800788 319 no rank 1 Porphyrobacter 1111 3 0 118 genus 6 0 2 2683265 no rank 112 Porphyrobacter sp. LM 6 1896196 0 1 species 46 Porphyrobacter HT-58-2 species 66 1 0 2023229 1 Erythrobacter 9 1041 3 0 genus 201 Erythrobacter litoralis species 136 39960 1 0 Porphyrobacter neustonensis 0 1 1112 species 56 135 genus 1855416 0 2 Erythrobacter seohaensis 61 species 266951 0 1 1 0 192812 74 species Erythrobacter flavus genus 109 2800682 1 0 Altererythrobacter namhicola 109 species 0 1 645517 168 genus 2800685 1 0 543877 1 0 species 168 Altererythrobacter marensis Croceicoccus 1 177 genus 1295327 0 3 5 Croceicoccus marinus 1 0 450378 species 90 Croceicoccus naphthovorans 82 species 1 0 1348774 185 genus 2 0 2800681 0 1 1648404 species 71 Erythrobacter atlanticus Erythrobacter gangjinensis 114 species 0 1 502682 5103 family 41297 0 57 59 Sphingomonadaceae 1 0 1 2709685 77 genus 0 1 266812 77 species Sphingorhabdus flavimaris 35 15 0 165695 genus 1482 1 Sphingobium Sphingobium chlorophenolicum 118 species 0 1 46429 Sphingobium indicum 99 species 1 0 332055 no rank 554 2611147 0 6 Sphingobium sp. MI1205 407020 0 1 species 71 Sphingobium sp. RAC03 1 0 1843368 species 70 Sphingobium sp. SYK-6 108 species 627192 1 0 Sphingobium sp. EP60837 0 1 1855519 species 68 Sphingobium sp. YBL2 484429 0 1 species 111 species 126 1315974 0 1 Sphingobium sp. TKS Sphingobium hydrophobicum 138 species 1673076 1 0 Sphingobium cloacae 1 0 120107 88 species Sphingobium yanoikuyae species 131 13690 1 0 1332080 1 0 141 species Sphingobium baderi 0 1 332056 species 97 Sphingobium japonicum Sphingobium herbicidovorans species 81 0 1 76947 1 Sphingopyxis 165697 10 0 781 genus 9 4 0 2614943 no rank 321 Sphingopyxis sp. MG species 59 1866325 0 1 1357916 0 1 species 82 Sphingopyxis sp. QXT-31 86 species 1 0 1913578 Sphingopyxis sp. LPB0140 Sphingopyxis sp. 113P3 292913 0 1 species 94 Sphingopyxis alaskensis 58 species 117207 0 1 species 161 33050 0 1 Sphingopyxis macrogoltabida 87 species 1515612 1 0 Sphingopyxis fribergensis Sphingopyxis terrae 0 1 33052 35 species Sphingopyxis granuli 110 species 267128 0 1 150203 0 2 96 genus 5 1 Blastomonas 1 0 2626550 91 no rank Blastomonas sp. RAC04 species 91 1842535 1 0 1649486 0 1 genus 111 111 species 0 1 1850238 Rhizorhabdus dicambivorans genus 86 0 2 72173 3 Citromicrobium 1 2630544 1 0 no rank 83 Citromicrobium sp. JL477 0 1 1634516 species 83 11 1434046 3 0 genus 190 1 Sphingorhabdus no rank 179 2 0 2614947 Sphingorhabdus sp. YGSMI21 65 species 2077182 1 0 Sphingorhabdus sp. M41 1 0 1806885 species 114 238 genus 1 0 541 238 species 542 0 1 Zymomonas mobilis Sphingomonas 1 31 1499 genus 15 0 13687 152682 1 0 78 species Sphingomonas melonis Sphingomonas sanxanigenens 397260 0 1 species 167 species 101 0 1 1609977 Sphingomonas hengshuiensis no rank 618 0 6 196159 Sphingomonas sp. NIC1 species 87 1961362 0 1 1 0 1030157 108 species Sphingomonas sp. KC8 Sphingomonas sp. Cra20 1 0 1327635 species 67 Sphingomonas sp. MM-1 745310 0 1 109 species Sphingomonas sp. LK11 156 species 0 1 1390395 Sphingomonas sp. LM7 1 0 1938607 species 91 113 species 1 0 93064 Sphingomonas koreensis 0 1 1549858 106 species Sphingomonas taxi 192 species 160791 2 0 95 Sphingomonas wittichii 1 Sphingomonas sp. DC-6 1283312 1 0 97 strain 0 1 1560345 93 species Sphingomonas panacis 403 genus 165696 5 0 7 Novosphingobium 1 205844 1 0 species 108 Novosphingobium pentaromativorans no rank 82 2644732 1 0 Novosphingobium sp. PP1Y species 82 702113 1 0 Novosphingobium aromaticivorans species 71 0 1 48935 Novosphingobium resinovorum 135 species 158500 0 1 81 genus 2685927 1 0 81 species 1921510 0 1 Sphingomonas sp. JJ-A5 order 21 0 2 255473 family 21 255474 0 2 4 21 genus 208215 0 2 Parvularcula 1 Parvularcula bermudensis species 17 208216 0 1 97 0 59 204441 7383 order 1 Rhodospirillales 70 3347 family 0 30 433 Acetobacteraceae 1 Roseomonas 1 genus 293 125216 0 3 7 121 species 257708 1 0 Roseomonas gilardii no rank 165 0 1 2617492 Roseomonas sp. FDAARGOS_362 165 species 1 0 2018065 genus 77 0 1 91914 Asaia bogorensis 1 0 91915 77 species 120 genus 89583 0 2 1 Gluconacetobacter 1 1 0 33996 119 species Gluconacetobacter diazotrophicus 0 2 364409 genus 304 2 1 Granulibacter species 302 1 0 364410 Granulibacter bethesdensis 0 1 153497 genus 145 Kozakia baliensis species 145 153496 0 1 2 0 441 315 genus Gluconobacter albidus 93 species 1 0 318683 Gluconobacter oxydans species 222 442 1 0 7 5 0 1434011 genus 497 1 Komagataeibacter Komagataeibacter xylinus 28448 0 1 216 species 1 0 1177712 113 species Komagataeibacter medellinensis species 61 33995 1 0 Komagataeibacter europaeus 0 1 265960 species 100 Komagataeibacter nataicola genus 75 320496 0 1 320497 0 1 species 75 Neoasaia chiangmaiensis 1 0 1602345 genus 92 Parasaccharibacter apium 92 species 1510841 1 0 1 Acidiphilium 522 0 3 genus 191 8 Acidiphilium multivorum 62140 0 1 97 species Acidiphilium cryptum species 86 524 0 1 genus 1168 8 0 434 15 Acetobacter 1 0 1 104102 species 134 Acetobacter tropicalis Acetobacter oryzifermentans 118 species 1633874 1 0 151157 1 0 subgenus 118 Acetobacter aceti 118 species 1 0 435 1 0 65959 species 103 Acetobacter pomorum 1 0 1076596 118 species Acetobacter persici 402 species 438 0 1 Acetobacter pasteurianus Acetobacter senegalensis 1 0 446692 160 species 1 Rhodospirillaceae 55 41295 0 28 family 3939 1263978 0 1 genus 73 Candidatus Endolissoclinum faulkneri 0 1 1263979 73 species Nitrospirillum 1 genus 304 2 0 1543705 3 species 301 28077 0 1 Nitrospirillum amazonense 1 Magnetospirillum 0 5 13134 genus 759 13 1 0 84159 163 species Magnetospirillum magneticum 362 no rank 2 0 2617991 Magnetospirillum sp. XM-1 0 1 1663591 162 species Magnetospirillum sp. ME-1 0 1 1639348 200 species species 221 55518 1 0 Magnetospirillum gryphiswaldense 0 1 1182780 genus 121 1 0 2685734 121 no rank Magnetospira sp. QH-2 species 121 1288970 1 0 115 genus 0 1 1612157 Pararhodospirillum photometricum species 115 1 0 1084 genus 387 3 0 168934 3 Thalassospira 1 species 149 0 1 220697 Thalassospira xiamenensis Thalassospira sp. CSC3H3 235 species 2048283 0 1 0 2 171436 genus 174 3 1 Tistrella Tistrella mobilis 0 1 171437 171 species 4 1543704 0 2 225 genus 1 Niveispirillum 1612173 1 0 species 221 Niveispirillum cyanobacteriorum 1 Azospirillum 5 0 191 genus 1295 29 392 species 192 1 0 Azospirillum brasilense 291 species 1 0 528244 Azospirillum thiophilum Azospirillum humicireducens 145 species 0 1 1226968 438 species 193 1 0 Azospirillum lipoferum 2 1804663 0 2 92 genus 1 Haematospirillum 1 0 1549855 90 species Haematospirillum jordaniae Rhodospirillum 1 339 genus 3 0 1081 3 Rhodospirillum centenum 171 species 34018 1 0 165 species 1 0 1085 Rhodospirillum rubrum 2800060 0 5 262 order 1 Hyphomonadaceae 2 69657 0 5 262 family 1 0 2723 72 genus Hirschia baltica 0 1 2724 72 species 1 Hyphomonas 85 3 0 188 genus 2 no rank 80 2630699 1 0 0 1 1906738 species 80 Hyphomonas sp. Mor2 Hyphomonas neptunium 81032 0 1 106 species 7 0 82117 no rank 606 Polymorphum 1 3 genus 143 0 2 991903 Polymorphum gilvum 991904 0 1 species 140 213485 1 0 genus 238 349221 0 1 238 species Micavibrio aeruginosavorus clade 133 62654 0 2 1 Candidatus Puniceispirillum 0 2 767891 133 genus 1 767892 1 0 132 species Candidatus Puniceispirillum marinum Phreatobacter 1 92 genus 2 0 1632780 6 Phreatobacter sp. S-12 1 0 1868589 species 86 order 81 2800059 0 1 1 0 2800061 81 family genus 81 0 1 74317 74318 0 1 species 81 Maricaulis maris 1 9 0 1553900 634 class 1 Oligoflexia 436 order 213481 5 0 3 Bdellovibrionales 1 4 family 433 0 4 213483 Bdellovibrionaceae 1 Bdellovibrio 1 genus 429 3 0 958 1 Bdellovibrio exovorus species 85 0 1 453816 Bdellovibrio bacteriovorus 343 species 959 1 0 197 order 0 3 2024979 87 family 1652132 0 2 1 Halobacteriovoraceae 1 86 genus 1 0 1652133 species 86 1 0 97084 Halobacteriovorax marinus family 110 263369 0 1 146784 1 0 110 genus 110 species 0 1 960 Bacteriovorax stolpii 2 580370 0 5 class 242 1 Zetaproteobacteria 580371 0 4 240 order 1 1 Mariprofundales Mariprofundaceae 1 1 239 family 580372 3 0 0 2 377315 238 genus Mariprofundus ferrinatatus 129 species 1 0 1921087 109 species 0 1 1921086 Mariprofundus aestuarium 83 0 335 28216 54966 class 1 Betaproteobacteria 33809 0 2 no rank 271 Betaproteobacteria bacterium GR16-43 157 species 0 1 1904640 beta proteobacterium CB species 114 543913 0 1 403 0 225 80840 order 43157 1 Burkholderiales 1 Oxalobacteraceae 75682 0 27 family 5335 43 42 0 6 149698 1211 genus 1 Massilia Massilia sp. ZMN-3 species 285 0 1 2072590 Massilia sp. B2 0 1 2045208 138 species 0 2 2609279 no rank 519 291 species 1 0 1678028 Massilia sp. NR 4-1 Massilia sp. WG5 228 species 1 0 1707785 1141883 0 1 227 species Massilia putida 846 0 1 270 genus 270 species 847 0 1 Oxalobacter formigenes 1 Herbaspirillum 0 6 963 1163 genus 29 217 species 0 1 80842 Herbaspirillum rubrisubalbicans Herbaspirillum seropedicae 964 0 1 345 species 182 no rank 2624150 1 0 Herbaspirillum sp. meg3 182 species 0 1 2025949 143 species 341045 0 1 Herbaspirillum hiltneri species 247 92645 1 0 Herbaspirillum frisingense 0 2 303379 genus 233 species 139 0 1 204773 Herminiimonas arsenicoxydans species 94 1809410 1 0 Herminiimonas arsenitoxidans 29580 0 7 genus 1431 38 1 Janthinobacterium 0 1 55508 species 252 Janthinobacterium agaricidamnosum no rank 866 2610881 0 4 1 0 1236179 168 species Janthinobacterium sp. B9-8 species 230 1 0 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 0 1 375286 species 189 Janthinobacterium sp. Marseille species 279 1 0 1938606 Janthinobacterium sp. LM6 368607 1 0 species 275 Janthinobacterium svalbardensis Collimonas 1 31 984 genus 0 4 202907 1 0 158899 species 325 Collimonas fungivorans 0 1 279113 264 species Collimonas pratensis Collimonas arenae 279058 1 0 364 species 5895 no rank 2 0 80841 0 1 1469502 species 132 Burkholderiales bacterium GJ-E10 Burkholderiales bacterium YL45 0 1 1834205 species 5763 224471 0 17 2024 no rank 191 genus 0 2 212743 5 Rhizobacter 1 Rhizobacter gummiphilus 186 species 946333 1 0 genus 270 32012 0 2 3 Thiomonas 1 0 1 926 species 267 Thiomonas intermedia 93681 2 0 242 genus 5 1 Roseateles Roseateles depolymerans species 237 76731 1 0 65047 2 0 genus 191 8 1 Mitsuaria 1 0 2648776 no rank 183 Mitsuaria sp. 7 species 183 1658665 0 1 Paucibacter 1 genus 216 2 0 318147 7 2642959 1 0 no rank 209 1768242 0 1 209 species Paucibacter sp. KCTC 42545 genus 179 88 2 0 6 Leptothrix 1 Leptothrix cholodnii 34029 0 1 species 173 1 Rubrivivax 12 0 2 28067 genus 257 Rubrivivax gelatinosus 28068 1 0 245 species [Polyangium] brachysporum species 262 0 1 413882 3 316612 0 2 216 genus 1 Methylibium species 213 105560 1 0 Methylibium petroleiphilum Burkholderiaceae 1 135 family 13415 83 0 119060 3 0 44013 156 genus Polynucleobacter necessarius 26 species 1 0 576610 Polynucleobacter duraquae 46 species 1835254 0 1 Polynucleobacter asymbioticus 84 species 576611 1 0 1 Burkholderia 32008 0 41 5828 genus 353 123 species 41899 0 1 Burkholderia plantarii no rank 1210 2613784 11 0 Burkholderia sp. PAMC 26561 1 0 1795043 154 species 1 0 1740163 95 species Burkholderia sp. Bp7605 89 species 1740162 0 1 Burkholderia sp. Bp5365 134 species 640512 0 1 Burkholderia sp. CCGE1003 species 63 1 0 416344 Burkholderia sp. KJ006 Burkholderia sp. HB1 species 100 1 0 1678678 Burkholderia sp. YI23 0 1 1097668 145 species 640510 1 0 species 124 Burkholderia sp. CCGE1001 Burkholderia sp. PAMC 28687 92 species 1795874 1 0 Burkholderia sp. 2002721687 1468409 0 1 species 100 species 114 1 0 758796 Burkholderia sp. RPE67 1 0 337 species 253 Burkholderia glumae 28095 0 1 species 292 Burkholderia gladioli 840 species group 111527 7 0 Burkholderia sp. MSMB0852 1637841 0 1 55 species Burkholderia mallei 1 0 13373 77 species Burkholderia thailandensis 57975 0 1 species 247 Burkholderia sp. MSMB617WGS species 41 1 0 1637831 Burkholderia sp. MSMB0266 1637837 1 0 61 species Burkholderia pseudomallei species 221 0 1 28450 species 138 1 0 342113 Burkholderia oklahomensis 87882 19 0 species group 2757 Burkholderia vietnamiensis 1 0 60552 species 128 1 0 152480 species 98 Burkholderia ambifaria Burkholderia diffusa 90 species 1 0 488732 74 species 1503055 0 1 Burkholderia territorii Burkholderia stagnalis 1503054 0 1 80 species Burkholderia seminalis 488731 0 1 species 89 488447 1 0 species 101 Burkholderia contaminans Burkholderia ubonensis 1 0 101571 species 247 227 species 87883 1 0 Burkholderia multivorans Burkholderia cenocepacia 95486 1 0 species 460 82 species 488446 1 0 Burkholderia latens 0 1 1207504 species 79 Burkholderia pseudomultivorans Burkholderia stabilis 134 species 1 0 95485 60550 1 0 species 86 Burkholderia pyrrocinia 165 species 0 1 482957 Burkholderia lata Burkholderia dolosa 152500 1 0 species 79 species 46 488729 0 1 Burkholderia metallica 265293 0 1 species 56 [Pseudomonas] mesoacidophila 0 1 292 species 436 Burkholderia cepacia 1494 genus 0 10 93217 49 Pandoraea 1 Pandoraea sputorum 93222 1 0 126 species Pandoraea oxalativorans 573737 0 1 160 species Pandoraea faecigallinarum species 141 0 1 656179 0 1 93220 191 species Pandoraea pnomenusa Pandoraea apista 93218 0 1 species 173 656178 1 0 174 species Pandoraea vervacti Pandoraea thiooxydans 127 species 0 1 445709 Pandoraea pulmonicola 93221 1 0 species 154 Pandoraea norimbergensis 93219 1 0 species 199 1 0 2571159 81 genus Paraburkholderia rhizoxinica 1 0 412963 species 81 1 Paraburkholderia 0 12 1822464 2168 genus 57 0 1 311230 172 species Paraburkholderia terrae Paraburkholderia xenovorans species 193 36873 1 0 species 199 169430 1 0 Paraburkholderia hospita Paraburkholderia phytofirmans 191 species 0 1 261302 117 no rank 2615204 1 0 Paraburkholderia sp. SOS3 species 117 1 0 1926494 Paraburkholderia caribensis 0 1 75105 268 species Paraburkholderia sprentiae species 173 1 0 948107 species 201 134537 1 0 Paraburkholderia fungorum 241 species 148447 1 0 Paraburkholderia phymatum Paraburkholderia phenoliruptrix species 153 252970 0 1 Paraburkholderia aromaticivorans species 203 2026199 1 0 26 48736 0 5 genus 1479 1 Ralstonia Ralstonia solanacearum 1 0 305 species 671 Ralstonia insidiosa species 209 190721 0 1 0 1 105219 224 species Ralstonia mannitolilytica Ralstonia pickettii species 349 329 0 1 1 Cupriavidus 9 0 106589 genus 1943 64 Cupriavidus metallidurans 1 0 119219 species 233 Cupriavidus sp. USMAA1020 species 225 367825 0 1 species 169 248026 1 0 Cupriavidus pinatubonensis 165 species 1 0 82541 Cupriavidus gilardii 482 no rank 2 0 2640874 Cupriavidus sp. USMAHM13 0 1 1389192 species 229 Cupriavidus sp. USMAA2-4 876364 1 0 species 253 Cupriavidus necator species 380 106590 1 0 68895 0 1 225 species Cupriavidus basilensis 131 genus 0 1 1827195 Burkholderia sp. RPE64 758793 1 0 species 131 Comamonadaceae 1 8630 family 0 55 80864 142 Rhodoferax 1 4 genus 798 0 5 28065 Rhodoferax koreense 1842727 1 0 species 221 Rhodoferax antarcticus 0 1 81479 species 172 Rhodoferax saidenbachensis species 215 1484693 1 0 Rhodoferax ferrireducens species 186 0 1 192843 364316 1 0 genus 111 Verminephrobacter eiseniae 111 species 0 1 364317 genus 863 0 4 283 15 Comamonas 1 Comamonas testosteroni 285 0 1 424 species 1082851 1 0 species 214 Comamonas serinivorans Comamonas kerstersii 210 species 225992 1 0 Variovorax 1 genus 1223 5 0 34072 32 663243 0 2 420 no rank Variovorax sp. PAMC 28711 1795631 0 1 species 103 2126319 0 1 317 species Variovorax sp. PMC12 202 species 0 1 436515 Variovorax boronicumulans Variovorax paradoxus 34073 0 1 569 species 1 Alicycliphilus 1 2 0 201096 genus 242 Alicycliphilus denitrificans 179636 1 0 241 species Polaromonas 1 376 genus 0 3 52972 3 2638319 0 1 no rank 180 species 180 296591 0 1 Polaromonas sp. JS666 species 193 1 0 216465 Polaromonas naphthalenivorans genus 91 0 1 1436289 Candidatus Symbiobacter mobilis species 91 1436290 0 1 1 Melaminivora 1 1649468 2 0 genus 116 2641902 0 1 115 no rank Melaminivora sp. SC2-9 0 1 2109913 species 115 Simplicispira 1 148 genus 2 0 352450 1 Simplicispira sp. SC1-8 species 147 0 1 2109915 17 0 5 80865 genus 1046 1 Delftia Delftia tsuruhatensis species 272 180282 0 1 no rank 493 0 2 2613839 Delftia sp. HK171 1920191 1 0 species 229 species 264 742013 1 0 Delftia sp. Cs1-4 Delftia acidovorans species 264 80866 0 1 162 genus 238749 1 0 1546149 1 0 species 162 Diaphorobacter polyhydroxybutyrativorans Ramlibacter 1 4 genus 313 0 2 174951 Ramlibacter tataouinensis 309 species 1 0 94132 genus 207 0 2 2490452 Comamonadaceae bacterium A1 1 0 1458425 species 103 Comamonadaceae bacterium B1 1458426 0 1 104 species 47420 4 0 genus 607 11 1 Hydrogenophaga no rank 412 2 0 2610897 174 species 1 0 1842537 Hydrogenophaga sp. RAC07 795665 0 1 species 238 Hydrogenophaga sp. PBC Hydrogenophaga crassostreae species 184 0 1 1763535 185 genus 2678886 0 1 Melaminivora sp. SC2-7 0 1 2116657 species 185 genus 311 2 0 219181 Ottowia sp. KADR8-3 2109914 0 1 162 species 149 no rank 2645081 0 1 1 0 1658672 149 species Ottowia sp. oral taxon 894 222 genus 0 3 665874 1 Limnohabitans 1 0 2 2626134 no rank 221 0 1 1678129 88 species Limnohabitans sp. 103DPR2 1 0 1678128 species 133 Limnohabitans sp. 63ED37-2 55 12916 9 0 genus 1467 1 Acidovorax Acidovorax citrulli species 125 80869 0 1 no rank 724 0 4 2684926 Acidovorax sp. JS42 232721 0 1 species 193 Acidovorax sp. KKS102 species 206 0 1 358220 Acidovorax sp. T1 1858609 0 1 species 139 Acidovorax sp. RAC01 1842533 0 1 species 186 Acidovorax sp. NA3 1 0 553814 177 species species 176 0 1 80867 Acidovorax avenae Acidovorax ebreus 721785 1 0 species 210 family 7455 0 40 506 82 Alcaligenaceae 1 77 genus 2457 6 0 222 Achromobacter 1 species 448 1 0 217203 Achromobacter spanius 1 0 217204 235 species Achromobacter insolitus species 878 85698 1 0 Achromobacter xylosoxidans Achromobacter denitrificans 596 species 0 1 32002 no rank 223 0 1 2626865 species 223 1758194 0 1 Achromobacter sp. AONIH1 132 genus 0 1 305976 no rank 132 1 0 2640016 Pusillimonas sp. T7-7 species 132 1007105 0 1 2 269 genus 3 0 290425 Advenella 1 species 151 0 1 302406 Advenella mimigardefordensis Advenella kashmirensis 1 0 310575 species 116 Taylorella 1 1 genus 163 0 3 29574 species 105 84590 1 0 Taylorella asinigenitalis species 57 29575 1 0 Taylorella equigenitalis 9 1921582 2 0 258 genus 1 Orrella 249 species 1851544 0 1 Orrella dioscoreae 359336 2 0 208 genus 8 1 Castellaniella Castellaniella defragrans 1 0 75697 200 species 1472344 0 1 genus 129 Basilea psittacipulmonis 129 species 1 0 1472345 97 517 17 0 genus 3231 1 Bordetella Bordetella pseudohinzii 210 species 1 0 1331258 Bordetella flabilis 463014 1 0 169 species 149 species 0 1 520 Bordetella pertussis Bordetella hinzii 164 species 0 1 103855 Bordetella avium 1 0 521 144 species species 124 1 0 35814 Bordetella holmesii species 197 1 0 519 Bordetella parapertussis Bordetella petrii 94624 1 0 154 species Bordetella genomosp. 6 133 species 463024 1 0 1416806 0 1 species 273 Bordetella genomosp. 8 2630031 0 1 no rank 223 Bordetella sp. H567 1697043 1 0 223 species 0 1 463025 252 species Bordetella bronchialis Bordetella trematum 214 species 1 0 123899 191 species 0 1 1416803 Bordetella genomosp. 9 Bordetella bronchiseptica species 337 1 0 518 1 0 463040 species 200 Bordetella genomosp. 13 1100891 1 0 genus 37 1 0 643674 species 37 Paenalcaligenes hominis 1 Oligella 2 0 90243 124 genus 20 Oligella urethralis 104 species 90245 0 1 genus 365 0 1 507 511 0 1 365 species Alcaligenes faecalis 0 22 206389 2572 order 44 1 Rhodocyclales family 679 0 6 75787 9 Rhodocyclaceae 1 181 no rank 75788 1 0 Rhodocyclaceae bacterium species 181 1898103 1 0 10 0 2 146937 genus 344 1 Azospira Azospira oryzae 0 1 146939 334 species 551759 0 2 145 genus 4 1 Aromatoleum species 141 1 0 551760 Aromatoleum aromaticum 72 family 1671 2008794 12 0 Zoogloeaceae 1 Azoarcus 1 genus 626 12960 5 0 22 306 no rank 2629479 0 2 species 132 0 1 198107 Azoarcus sp. CIB species 174 748247 1 0 Azoarcus sp. KH32C Azoarcus olearius 1 0 418699 129 species 1 0 2067960 species 169 Azoarcus sp. SY39 1 Thauera 6 0 33057 973 genus 21 Thauera aromatica 59405 0 1 159 species Thauera humireducens 186 species 0 1 1134435 96773 1 0 142 species Thauera chlorobenzoica 2609274 0 2 465 no rank Thauera sp. K11 2005884 0 1 228 species Thauera sp. MZ1T 85643 0 1 species 237 1 Azonexaceae 4 2008795 3 0 family 178 1 Dechloromonas 73029 0 2 174 genus 1 Dechloromonas aromatica 1 0 259537 species 173 50 5278 order 206351 36 0 Neisseriales 1 24 family 1923 13 0 1499392 Chromobacteriaceae 1 Pseudogulbenkiania 1 3 210 genus 568394 0 2 207 no rank 2642558 0 1 species 207 1 0 748280 Pseudogulbenkiania sp. NH8B genus 418 0 2 168470 2 Laribacter 1 Laribacter hongkongensis 168471 0 1 416 species 259 genus 2 0 885864 1 Jeongeupia 1 258 no rank 2619593 0 1 Jeongeupia sp. USM3 1 0 1906741 species 258 Aquaspirillum 1 2 genus 207 187 0 2 205 no rank 2620219 0 1 205 species 1938604 0 1 Aquaspirillum sp. LM1 0 4 90153 no rank 805 24 805 genus 535 0 4 Chromobacterium 1 1 0 1108595 295 species Chromobacterium vaccinii Chromobacterium violaceum 536 1 0 species 233 2641838 1 0 no rank 253 2059672 0 1 species 253 Chromobacterium sp. ATCC 53434 22 0 481 3305 family 58 1 Neisseriaceae 0 1 421605 no rank 133 Neisseriaceae bacterium DSM 100970 species 133 2052837 0 1 1 0 2 1193515 126 genus 1 Snodgrassella Snodgrassella alvi 1196083 1 0 125 species 1 Neisseria 70 12 0 482 genus 2420 no rank 392 0 2 2623750 species 175 1853276 0 1 Neisseria sp. 10022 Neisseria sp. KEM232 655307 1 0 species 217 Neisseria meningitidis 487 1 0 species 456 0 1 495 species 125 Neisseria elongata Neisseria lactamica species 202 0 1 486 1 0 485 species 142 Neisseria gonorrhoeae species 269 1 0 1853278 Neisseria sp. 10023 1 0 28091 species 129 Neisseria weaveri species 260 1 0 326523 Neisseria zoodegmatis 0 1 490 199 species Neisseria sicca Neisseria mucosa 176 species 488 1 0 59 0 3 genus 263 6 1 Vitreoscilla Vitreoscilla filiformis species 149 0 1 63 1 0 2627922 108 no rank Vitreoscilla sp. C1 108 species 96942 0 1 4 538 2 0 200 genus 1 Eikenella Eikenella corrodens 196 species 539 1 0 1 0 71 genus 105 105 species 72 0 1 Simonsiella muelleri 725 no rank 119066 0 11 0 1 189384 7 genus 1 0 189385 7 species Candidatus Tremblaya princeps Candidatus Accumulibacter 1 365 genus 0 2 327159 5 Candidatus Accumulibacter phosphatis 360 species 327160 1 0 genus 1 0 1 1301080 Candidatus Nasuia deltocephalinicola 1 species 0 1 1160784 genus 15 0 1 1381133 0 1 669502 15 species Candidatus Profftella armatura 0 6 33055 337 genus 3 1 Kinetoplastibacterium Kinetoplastibacterium blastocrithidii 14 species 1 0 233181 994695 0 1 56 species Candidatus Kinetoplastibacterium galatii Candidatus Kinetoplastibacterium crithidii 1 0 33056 122 species Candidatus Kinetoplastibacterium desouzaii 1 0 994692 species 118 0 1 994696 24 species Candidatus Kinetoplastibacterium oncopeltii 1 Nitrosomonadales 28 0 38 32003 order 2880 0 2 2008790 121 family Thiobacillus 1 genus 121 0 2 919 4 Thiobacillus denitrificans 36861 0 1 117 species 2772226 3 0 family 241 2 2 0 935200 genus 104 1 Sulfuricella Sulfuricella denitrificans 102 species 1 0 649841 genus 137 0 1 1778653 0 1 2637784 no rank 137 Sulfuriferula sp. AH1 137 species 1 0 1985873 12 353 family 90627 4 0 Gallionellaceae 1 Gallionella 1 genus 146 96 2 0 1 370405 1 0 species 145 Gallionella capsiferriformans 314343 1 0 genus 195 Sideroxydans lithotrophicus species 195 63745 0 1 32011 0 11 837 family 3 1 Methylophilaceae 220 genus 0 2 359407 0 1 359408 species 86 Methylotenera mobilis 0 1 1055487 species 134 Methylotenera versatilis 2 genus 97 2 0 16 Methylophilus 1 no rank 95 2630143 1 0 Methylophilus sp. TWE2 species 95 1 0 1662285 146 genus 1679002 0 2 1581557 0 1 49 species Candidatus Methylopumilus planktonicus 0 1 1581680 97 species Candidatus Methylopumilus turicensis 1 0 404 genus 92 Methylobacillus flagellatus species 92 405 0 1 5 genus 279 3 0 81682 Methylovorus 1 Methylovorus glucosotrophus 0 1 266009 species 133 no rank 141 1 0 2634027 141 species 887061 1 0 Methylovorus sp. MP688 5 2008793 0 5 family 342 1 Sterolibacteriaceae Methyloversatilis 1 9 genus 177 378210 2 0 1 0 2639971 168 no rank Methyloversatilis sp. RAC08 1842540 1 0 species 168 1 Sulfuritalea 3 1054211 2 0 genus 160 Sulfuritalea hydrogenivorans 0 1 748811 157 species 958 family 12 0 206379 1 Nitrosomonadaceae 1 Nitrosomonas 1 595 genus 7 0 914 3 Nitrosomonas communis 92 species 44574 1 0 Nitrosomonas ureae 83 species 1 0 44577 Nitrosomonas europaea 915 1 0 species 100 no rank 207 2609265 2 0 Nitrosomonas sp. AL212 species 124 153948 0 1 261292 0 1 species 83 Nitrosomonas sp. Is79A3 916 1 0 species 110 Nitrosomonas eutropha 1 35798 0 4 362 genus 1 Nitrosospira Nitrosospira briensis 0 1 35799 species 109 119 species 1288494 1 0 Nitrosospira lacus Nitrosospira multiformis 1231 0 1 species 133 subphylum 27854 68525 0 181 Deltaproteobacteria 1 38 class 16153 114 0 28221 1626 order 213118 17 0 11 Desulfobacterales 1 2 0 8 213119 family 849 1 Desulfobacteraceae 1 genus 250 2 0 28222 Desulfobacula 1 Desulfobacula toluolica 1 0 28223 species 249 218207 1 0 184 genus Desulfatibacillum alkenivorans 259354 0 1 184 species 1 0 2295 98 genus 98 species 0 1 2296 Desulfobacterium autotrophicum 1 Desulfococcus 896 3 0 genus 315 1 163 species 181663 1 0 Desulfococcus oleovorans 151 species 1 0 897 Desulfococcus multivorans 766 family 0 8 213121 5 Desulfobulbaceae 1 Desulfobulbus 1 2 295 genus 2 0 893 293 species 1986146 0 1 Desulfobulbus sp. ORNL 1 0 53318 genus 148 0 1 65555 species 148 Desulfocapsa sulfexigens 1 Desulfotalea 0 2 109168 genus 98 2 96 species 84980 1 0 Desulfotalea psychrophila 2 0 427922 genus 220 1 1 Desulfurivibrio 0 1 427923 species 219 Desulfurivibrio alkaliphilus 3331 order 24 0 69541 34 Desulfuromonadales 1 16 0 9 213421 family 1019 1 Desulfuromonadaceae 5 0 18 716 genus 8 1 Pelobacter 138 species 29542 0 1 Pelobacter acetylenicus 164 no rank 2620299 0 1 1 0 1842532 species 164 Pelobacter sp. SFB93 19 1 0 175 species Pelobacter carbinolicus 0 1 29543 species 231 Pelobacter propionicus 2 3 0 890 genus 287 1 Desulfuromonas 2614637 1 0 135 no rank 1 0 1823759 species 135 Desulfuromonas sp. DDH964 Desulfuromonas soudanensis 1 0 1603606 species 150 9 0 14 213422 2278 family 1 Geobacteraceae 1 Geoalkalibacter 392332 0 2 genus 241 1 species 240 483547 0 1 Geoalkalibacter subterraneus 32 genus 2028 28231 0 11 Geobacter 1 0 1 351604 species 165 Geobacter uraniireducens 166 species 28232 0 1 Geobacter metallireducens 1 0 345632 207 species Geobacter pickeringii 242 species 0 1 225194 Geobacter bemidjiensis species 187 1340425 1 0 Geobacter anodireducens species 236 313985 0 1 Geobacter lovleyi Geobacter sulfurreducens species 152 35554 1 0 Geobacter daltonii 0 1 1203471 species 127 no rank 514 0 2 2627627 443143 1 0 species 283 Geobacter sp. M18 443144 1 0 231 species Geobacter sp. M21 2 453227 3 0 order 258 1 Desulfarculales Desulfarculaceae 1 1 256 family 2 0 453228 453229 1 0 genus 255 species 255 453230 0 1 Desulfarculus baarsii 213115 24 0 6029 order 44 1 Desulfovibrionales 10 505 family 4 0 213116 Desulfomicrobiaceae 1 1 Desulfomicrobium 898 3 0 495 genus 1 Desulfomicrobium baculatum species 275 899 1 0 Desulfomicrobium orale 132132 0 1 species 219 1 Desulfovibrionaceae 0 17 194924 family 5412 14 311 genus 2794998 0 1 Desulfovibrio salexigens 0 1 880 species 311 Desulfovibrio 1 21 genus 3973 9 0 872 2593640 1 0 246 no rank Desulfovibrio sp. G11 species 246 631220 1 0 Candidatus Desulfovibrio trichonymphae 1725232 1 0 species 123 Desulfovibrio fairfieldensis 44742 0 1 691 species Desulfovibrio piger 704 species 901 0 1 0 1 58180 309 species Desulfovibrio alaskensis species 562 1 0 876 Desulfovibrio desulfuricans Desulfovibrio magneticus 1 0 184917 species 309 Desulfovibrio vulgaris 1 0 881 species 1008 681 genus 2035811 4 0 4 Pseudodesulfovibrio 1 Pseudodesulfovibrio profundus 57320 0 1 152 species Pseudodesulfovibrio aespoeensis 219 species 0 1 182210 Pseudodesulfovibrio indicus 1 0 1716143 306 species genus 174 41707 1 0 29546 1 0 174 species Lawsonia intracellularis 2582840 0 1 genus 259 species 259 1 0 873 Desulfovibrio africanus family 68 2 0 213117 1 Desulfohalobiaceae 1 45662 0 1 genus 67 67 species 45663 1 0 Desulfohalobium retbaense 57 29 36 0 4193 order 1 Myxococcales 80811 0 25 suborder 3261 family 1555 31 9 0 11 Myxococcaceae 1 28 32 5 0 1002 genus 1 Myxococcus Myxococcus fulvus 382 species 0 1 33 Myxococcus hansupus 1297742 1 0 252 species Myxococcus xanthus 0 1 34 181 species Myxococcus stipitatus 83455 0 1 159 species Corallococcus 1 5 542 genus 3 0 83461 Myxococcus macrosporus 35 0 1 232 species Corallococcus coralloides 305 species 1 0 184914 9 39 0 9 1012 family 1 Archangiaceae 0 2 42 genus 267 3 1 Cystobacter Cystobacter fuscus species 264 1 0 43 Archangium 1 5 276 genus 2 0 47 Archangium gephyra 271 species 48 0 1 1 Stigmatella 1 0 2 40 genus 239 0 1 41 species 238 Stigmatella aurantiaca 0 2 44 221 genus 1 1 Melittangium 0 1 83453 220 species Melittangium boletus 110 family 2 0 1524213 1 Vulgatibacter 1524214 0 2 genus 110 3 1391653 1 0 107 species Vulgatibacter incomptus 1 Anaeromyxobacteraceae 5 0 1524215 family 584 8 14 4 0 161492 576 genus 1 Anaeromyxobacter 2620896 2 0 274 no rank 404589 0 1 species 138 Anaeromyxobacter sp. Fw109-5 447217 0 1 136 species Anaeromyxobacter sp. K 1 0 161493 288 species Anaeromyxobacter dehalogenans suborder 217 0 2 224462 224464 0 2 family 217 2 0 162027 genus 217 5 1 Haliangium Haliangium ochraceum 212 species 80816 1 0 suborder 658 80812 8 0 7 0 5 49 512 family 1 Polyangiaceae 3 genus 126 50 2 0 Chondromyces 1 Chondromyces crocatus species 123 52 0 1 7 39643 0 2 379 genus 1 Sorangium Sorangium cellulosum 56 0 1 372 species family 146 1055686 3 0 1 Sandaracinaceae 1 genus 145 1055688 2 0 2 Sandaracinus 1 Sandaracinus amylolyticus 0 1 927083 143 species 213113 0 3 240 order 1 1 Desulfurellales 117942 0 2 family 239 genus 57 84404 0 1 Hippea maritima 57 species 1 0 84405 33001 1 0 genus 182 species 182 33002 0 1 Desulfurella acetivorans 1 Syntrophobacterales 2 6 0 213462 order 438 213465 1 0 96 family 96 genus 1 0 29526 species 96 0 1 119484 Syntrophobacter fumaroxidans 213468 4 0 340 family 115 genus 2357 1 0 Desulfomonile tiedjei species 115 2358 1 0 genus 88 60892 0 1 species 88 1 0 60893 Desulfobacca acetoxidans Syntrophus 1 3 137 genus 2 0 43773 Syntrophus aciditrophicus 134 species 0 1 316277 Epsilonproteobacteria 1 class 11701 29547 67 0 97 235899 0 2 order 272 179 family 1 0 224467 genus 179 191291 0 1 Nautilia profundicola 179 species 1 0 244787 2795691 0 1 93 family 93 genus 269258 0 1 no rank 93 1 0 2624044 Nitratiruptor sp. SB155-2 species 93 387092 1 0 1 Campylobacterales 64 0 213849 order 11332 123 Helicobacteraceae 1 family 1088 72293 0 14 6 Helicobacter 1 genus 1028 209 12 0 4 Helicobacter bilis 43 species 37372 0 1 76936 0 1 24 species Helicobacter typhlonius Helicobacter felis 0 1 214 39 species 61 species 1 0 212 Helicobacter acinonychis species 44 0 1 1591088 Helicobacter himalayensis Helicobacter hepaticus 32025 1 0 52 species 86 species 0 1 213 Helicobacter cinaedi 2593540 1 0 47 no rank 47 species 0 1 222136 Helicobacter sp. MIT 01-6242 species 82 1 0 138563 Helicobacter cetorum 1 0 217 species 55 Helicobacter mustelae Helicobacter pylori species 491 0 1 210 54 genus 0 1 843 Wolinella succinogenes 1 0 844 species 54 family 266 4 0 2771471 3 0 202746 186 genus 1 1 Sulfurimonas Sulfurimonas denitrificans 1 0 39766 83 species Sulfurimonas autotrophica 0 1 202747 species 102 0 1 286130 genus 80 Sulfuricurvum kujiense 0 1 148813 80 species Campylobacteraceae 1 family 9467 41 0 72294 329 13 914 genus 57665 9 0 Sulfurospirillum 1 Sulfurospirillum deleyianum species 87 1 0 65553 species 220 44674 0 1 Sulfurospirillum barnesii 90 species 0 1 194424 Sulfurospirillum halorespirans 0 1 66821 89 species Sulfurospirillum multivorans Sulfurospirillum cavolei species 91 366522 1 0 2618290 3 0 no rank 324 Sulfurospirillum sp. SL2-1 116 species 0 1 1986224 Sulfurospirillum sp. UCH001 112 species 1581011 0 1 Sulfurospirillum sp. JPD-1 96 species 0 1 220622 no rank 1028 0 5 2321108 no rank 276 2321207 1 0 Arcobacter sp. L 0 1 944547 species 276 2321187 0 1 genus 234 Arcobacter sp. LPB0137 234 species 0 1 1850254 Arcobacter 1 518 genus 28196 0 3 5 28197 0 1 species 315 Arcobacter butzleri species 198 28199 1 0 Arcobacter nitrofigilis genus 7196 194 26 0 58 Campylobacter 1 68 species 28898 0 1 Campylobacter helveticus Campylobacter peloridis 488546 0 1 95 species 0 1 200 species 47 Campylobacter curvus species 99 0 1 260714 Campylobacter insulaenigrae 334 no rank 0 4 2593542 Campylobacter sp. RM8964 0 1 1660074 species 113 0 1 1660073 species 38 Campylobacter sp. RM6137 Campylobacter sp. RM16704 1500960 0 1 species 66 Campylobacter sp. RM12175 species 117 1660076 1 0 species 164 76517 1 0 Campylobacter hominis Campylobacter lanienae 75658 0 1 species 162 0 1 824 64 species Campylobacter gracilis species 113 199 0 1 Campylobacter concisus 1 0 1244531 species 60 Campylobacter iguaniorum Campylobacter lari 338 species 201 0 1 species 172 1965231 1 0 Campylobacter pinnipediorum Campylobacter coli 2847 species 1 0 195 species 98 0 1 1031542 Campylobacter volucris 73 species 1 0 522485 Campylobacter avium Campylobacter hyointestinalis 198 1 0 species 136 0 1 497724 94 species Campylobacter subantarcticus 228 species 196 0 1 Campylobacter fetus Campylobacter ureolyticus 827 0 1 160 species Campylobacter sputorum 0 1 206 148 species species 120 374106 1 0 Campylobacter cuniculorum Campylobacter jejuni species 1518 1 0 197 family 388 2771472 4 0 genus 285 265570 0 3 2 Sulfurovum 1 2646778 1 0 110 no rank Sulfurovum sp. NBC37-1 387093 0 1 species 110 173 species 206403 1 0 Sulfurovum lithotrophicum 269260 1 0 103 genus 269261 0 1 species 103 Nitratifractor salsuginis 1 Gammaproteobacteria 0 837 1236 class 143941 330 Cardiobacteriales 1 63 order 0 2 135615 1 family 62 868 0 1 869 0 1 genus 62 62 species 0 1 870 Dichelobacter nodosus 3 order 1733 24 0 1706369 Cellvibrionales 1 964 family 1706371 0 10 1 Cellvibrionaceae 1 1 Simiduia 7 0 2 447467 160 genus Simiduia agarivorans 1 0 447471 153 species 76 genus 1 0 316625 86304 0 1 species 76 Saccharophagus degradans 80 genus 1 0 2425 Teredinibacter turnerae 0 1 2426 species 80 genus 170 2036021 0 1 1737490 1 0 species 170 Agarilytica rhodophyticola 3 genus 477 0 4 10 Cellvibrio 1 2624793 0 2 no rank 328 species 121 1945512 1 0 Cellvibrio sp. PSBB023 Cellvibrio sp. PSBB006 1987723 1 0 species 207 146 species 1 0 155077 Cellvibrio japonicus Spongiibacteraceae 1 3 239 family 0 5 1706375 89 genus 0 1 1434050 Zhongshania aliphaticivorans species 89 0 1 1470434 1 Spongiibacter 0 2 630749 52 genus 1 51 no rank 1 0 2631504 51 species 1620392 0 1 Spongiibacter sp. IMCC21906 1084558 0 1 genus 95 species 95 716816 1 0 Oceanicoccus sagamiensis 1 0 3 1706372 218 family 1 Halieaceae genus 217 1217416 2 0 species 130 930805 0 1 Halioglobus japonicus 0 1 930806 species 87 Halioglobus pacificus 2 family 309 5 0 1706373 Microbulbiferaceae 1 Microbulbifer 1 5 307 genus 48073 0 4 0 1 1769779 116 species Microbulbifer aggregans 91 species 0 1 252514 Microbulbifer thermotolerans 95 species 0 1 260552 Microbulbifer agarilyticus 29 0 135624 order 4963 20 1 Aeromonadales Aeromonadaceae 1 4943 family 28 0 84642 79 Aeromonas 1 genus 4113 18 0 642 316 146 species 651 1 0 Aeromonas media Aeromonas rivipollensis 186 species 948519 1 0 Aeromonas schubertii 1 0 652 163 species Aeromonas veronii 1 0 654 457 species no rank 1099 257493 0 8 153 species 1 0 2033032 Aeromonas sp. CA23 Aeromonas sp. ASNIH5 159 species 1758179 0 1 Aeromonas sp. ASNIH7 1 0 1920107 126 species Aeromonas sp. ASNIH3 species 106 1 0 1636608 Aeromonas sp. CU5 0 1 2033033 species 158 Aeromonas sp. ASNIH4 202 species 1636609 0 1 Aeromonas sp. ASNIH2 1 0 1636607 103 species Aeromonas sp. ASNIH1 92 species 1 0 1636606 Aeromonas aquatica species 195 1 0 558964 Aeromonas caviae 116 species 0 1 648 1 0 645 236 species Aeromonas salmonicida Aeromonas hydrophila 644 1 0 species 991 Aeromonas dhakensis species 208 0 1 196024 225143 0 3 genus 155 1 1 Oceanisphaera 0 1 1416627 101 species Oceanisphaera profunda Oceanisphaera sp. AMac2203 0 1 1903694 species 53 1 222 genus 129577 2 0 Oceanimonas 1 no rank 221 2636315 1 0 221 species 0 1 511062 Oceanimonas sp. GK1 Tolumonas 1 187 genus 43947 2 0 5 43948 0 1 species 182 Tolumonas auensis Zobellella 1 genus 187 2 0 347533 1 species 186 347534 0 1 Zobellella denitrificans 6380 order 135623 41 0 52 641 0 41 family 6380 1 Vibrionaceae 99 genus 0 1 246861 Grimontia hollisae 99 species 673 0 1 1 Photobacterium 3 657 0 4 675 genus Photobacterium gaetbulicola species 207 1295392 1 0 Photobacterium damselae species 271 38293 0 1 Photobacterium profundum 194 species 1 0 74109 386 genus 0 4 511678 6 Aliivibrio 1 Aliivibrio wodanis 80852 1 0 103 species Aliivibrio fischeri species 151 668 1 0 Aliivibrio salmonicida 40269 1 0 species 126 102 genus 5073 662 0 30 Vibrio 1 0 1 55601 220 species Vibrio anguillarum Vibrio qinghaiensis 2025808 1 0 122 species 1 0 1891919 76 species group Vibrio tubiashii 76 species 29498 1 0 1 0 553239 106 species Vibrio breoganii 91 species 0 1 1534743 Vibrio hyugaensis Vibrio gazogenes species 145 687 1 0 species 213 0 1 674 Vibrio mimicus 0 1 52443 84 species Vibrio tapetis 672 0 1 species 457 Vibrio vulnificus Vibrio coralliilyticus 1 0 190893 species 315 Vibrio tasmaniensis 212663 0 1 101 species Vibrio furnissii 119 species 0 1 29494 2 0 2614977 219 no rank 1 0 2014742 species 84 Vibrio sp. 2521-89 0 1 1116375 135 species Vibrio sp. EJY3 Vibrio scophthalmi 45658 0 1 103 species species group 1759 717610 0 10 Vibrio natriegens 234 species 1 0 691 species 61 190895 1 0 Vibrio rotiferianus 766224 1 0 species 68 Vibrio jasicida species subgroup 197 0 2 2315253 150340 1 0 63 species Vibrio antiquarius Vibrio diabolicus 134 species 1 0 50719 Vibrio harveyi 152 species 669 0 1 168 species 1 0 696485 Vibrio owensii Vibrio campbellii 680 0 1 species 276 species 318 0 1 670 Vibrio parahaemolyticus Vibrio alginolyticus 0 1 663 species 285 Vibrio fluvialis 194 species 1 0 676 Vibrio tritonius 159 species 0 1 1435069 Vibrio cholerae species 216 1 0 666 species 272 28173 0 1 Vibrio nigripulchritudo 1 0 2042066 95 genus 95 species 1 0 1755811 Paraphotobacterium marinum order 109 1934945 0 4 2 Immundisolibacterales 1 1 Immundisolibacteraceae 1934946 0 3 family 107 7 Immundisolibacter 1 1 100 genus 2 0 1934947 1810504 0 1 species 99 Immundisolibacter cernigliae order 7363 135614 0 52 52 Xanthomonadales 1 1 Rhodanobacteraceae 1775411 14 0 1163 family 28 115 genus 0 1 2233801 Xanthomonadales bacterium D13 115 species 1 0 2021234 Frateuria 1 1 genus 101 0 2 70411 Frateuria aurantia 81475 0 1 species 100 1 Luteibacter 1 0 2 242605 genus 117 1 0 242606 116 species Luteibacter rhizovicinus 1 Dyella 231454 4 0 genus 506 7 species 135 1379159 0 1 Dyella jiangningensis species 199 1 0 231455 Dyella japonica species 165 1 0 445710 Dyella thiooxydans 157 genus 75309 2 0 4 Rhodanobacter 1 Rhodanobacter denitrificans 153 species 1 0 666685 323413 2 0 139 genus 1 1 Dokdonella species 138 0 1 323415 Dokdonella koreensis 72 6148 family 37 0 32033 Xanthomonadaceae 1 399 genus 83618 2 0 0 1 415229 132 species Pseudoxanthomonas spadix 267 species 314722 1 0 Pseudoxanthomonas suwonensis genus 144 2370 0 1 0 1 2371 species 144 Xylella fastidiosa 1 Lysobacter 68 5 0 genus 650 5 Lysobacter gummosus 1 0 262324 179 species 69 1 0 153 species Lysobacter enzymogenes Lysobacter capsici species 154 0 1 435897 159 species 84531 1 0 Lysobacter antibioticus 1 Luteimonas 1 83614 0 2 genus 83 species 82 0 1 2006110 Luteimonas sp. 100111 42 40323 9 0 genus 2243 1 Stenotrophomonas 1 0 216778 species 190 Stenotrophomonas rhizophila 4 0 196198 no rank 589 1827305 1 0 species 130 Stenotrophomonas sp. MYb57 1793721 0 1 132 species Stenotrophomonas sp. KCTC 12332 0 1 2005046 159 species Stenotrophomonas sp. WZN-1 1904944 1 0 species 168 Stenotrophomonas sp. LM091 Stenotrophomonas acidaminiphila 245 species 128780 0 1 Stenotrophomonas nitritireducens species 148 83617 0 1 995085 1 0 1029 species group Stenotrophomonas maltophilia 0 1 40324 species 1029 132 338 0 17 2557 genus 1 Xanthomonas Xanthomonas perforans 1 0 442694 153 species Xanthomonas vesicatoria 156 species 56460 1 0 Xanthomonas euvesicatoria 107 species 0 1 456327 125 species 56459 1 0 Xanthomonas vasicola species 324 339 1 0 Xanthomonas campestris Xanthomonas translucens 158 species 1 0 343 Xanthomonas albilineans 1 0 29447 species 73 species 111 1985254 0 1 Xanthomonas phaseoli Xanthomonas axonopodis 83 species 53413 0 1 142 species 56458 0 1 Xanthomonas sacchari 347 0 1 220 species Xanthomonas oryzae species group 451 0 2 643453 366648 0 1 116 species Xanthomonas fuscans Xanthomonas citri 0 1 346 335 species Xanthomonas alfalfae 0 1 366650 110 species 1 0 56454 134 species Xanthomonas hortorum Xanthomonas fragariae 0 1 48664 78 species Pseudomonadales 1 108 order 25414 72274 0 128 85 0 135621 family 19823 125 1 Pseudomonadaceae Pseudomonas 1 genus 19075 0 80 286 593 316 species 104087 0 1 Pseudomonas frederiksbergensis 9 0 136843 species group 2655 species 118 47879 1 0 Pseudomonas corrugata 294 1 0 species 1499 Pseudomonas fluorescens 0 1 200450 species 146 Pseudomonas trivialis Pseudomonas mandelii species 119 75612 0 1 Pseudomonas poae species 127 0 1 200451 1 0 380021 species 181 Pseudomonas protegens 76758 0 1 species 101 Pseudomonas orientalis species 233 47878 0 1 Pseudomonas azotoformans 131 species 0 1 76761 Pseudomonas veronii Pseudomonas alcaliphila species 162 1 0 101564 Pseudomonas knackmussii 1 0 65741 118 species 112 species 1583341 0 1 Pseudomonas cerasi 2483 species group 6 0 136841 300 0 1 species 723 Pseudomonas mendocina Pseudomonas aeruginosa 752 species 1 0 287 1 0 43263 species 207 Pseudomonas alcaligenes 53408 1 0 species 350 Pseudomonas citronellolis 279 species 1 0 53412 Pseudomonas resinovorans 172 species subgroup 0 1 1232139 1149133 0 1 species 172 Pseudomonas furukawaii 0 30 196821 no rank 4046 0 1 1283291 222 species Pseudomonas sp. URMO17WK12:I11 species 121 1 0 2083055 Pseudomonas sp. LH1G9 1 0 1636610 111 species Pseudomonas sp. PONIH3 species 155 2069256 0 1 Pseudomonas sp. XWY-1 Pseudomonas sp. LPH1 1898684 1 0 162 species 134 species 0 1 1611770 Pseudomonas sp. MRSN12121 Pseudomonas sp. UW4 species 97 1207075 0 1 Pseudomonas sp. FGI182 1259844 1 0 130 species 128 species 0 1 2049589 Pseudomonas sp. HLS-6 1 0 1500687 152 species Pseudomonas sp. St29 Pseudomonas sp. LG1D9 species 86 2083054 0 1 Pseudomonas sp. SWI44 2083053 1 0 species 102 Pseudomonas sp. CCOS 191 1 0 1649877 142 species Pseudomonas sp. ATCC 13867 1 0 1294143 203 species 1415630 1 0 species 146 Pseudomonas sp. TKP 168 species 0 1 2018067 Pseudomonas sp. FDAARGOS_380 Pseudomonas sp. Os17 145 species 1 0 1500686 Pseudomonas sp. NC02 108 species 0 1 2067572 Pseudomonas sp. S-6-2 species 141 1931241 1 0 species 90 2083051 1 0 Pseudomonas sp. SWI6 143 species 2083052 0 1 Pseudomonas sp. SWI36 Pseudomonas sp. DR 5-09 species 101 1 0 1534110 1827300 1 0 86 species Pseudomonas sp. MYb193 Pseudomonas sp. VLB120 species 121 0 1 69328 0 1 1028989 species 154 Pseudomonas sp. StFLB209 0 1 1856685 species 175 Pseudomonas sp. TCU-HL1 1338689 0 1 species 147 Pseudomonas sp. JY-Q species 138 0 1 1981174 Pseudomonas sp. M30-35 0 1 1930532 species 136 Pseudomonas sp. CC6-YY-74 Pseudomonas sp. GR 6-02 1659194 1 0 species 102 Pseudomonas versuta 0 1 1788301 112 species Pseudomonas antarctica species 134 1 0 219572 Pseudomonas koreensis 198620 1 0 359 species 237610 1 0 130 species Pseudomonas psychrotolerans 312306 0 1 121 species Pseudomonas entomophila 157783 1 0 73 species Pseudomonas cremoricolorata species group 2823 136845 0 6 138 species 1 0 70775 Pseudomonas plecoglossicida Pseudomonas monteilii 341 species 76759 1 0 Pseudomonas putida species 1678 303 1 0 Pseudomonas oryzihabitans 0 1 47885 145 species 1 0 47880 249 species Pseudomonas fulva 78327 1 0 species 272 Pseudomonas mosselii species 95 1 0 244566 Pseudomonas lurida Pseudomonas silesiensis 1853130 0 1 species 116 Pseudomonas brassicacearum species 319 930166 0 1 Pseudomonas alkylphenolica 1 0 237609 118 species 136842 0 2 849 species group Pseudomonas fragi 208 species 296 1 0 587753 0 1 species 641 Pseudomonas chlororaphis species group 1061 2 0 136846 0 1 578833 species subgroup 964 0 1 316 964 species Pseudomonas stutzeri Pseudomonas balearica 1 0 74829 97 species 245 species 157782 1 0 Pseudomonas parafulva 1 0 216142 species 96 Pseudomonas rhizosphaerae 1939 species group 0 8 136849 species subgroup 833 1 0 251695 Pseudomonas syringae species 833 317 0 1 Pseudomonas viridiflava 119 species 33069 0 1 403 species subgroup 251698 2 0 Pseudomonas amygdali 47877 0 1 185 species 29438 1 0 species 218 Pseudomonas savastanoi Pseudomonas avellanae species 124 0 1 46257 1 0 251701 species 246 Pseudomonas syringae group genomosp. 3 0 1 2775504 104 no rank species 104 1206777 0 1 Pseudomonas sp. Lz4W 36746 0 1 110 species Pseudomonas cichorii 1849530 1 0 69 genus 0 1 1697053 69 species Oblitimonas alkaliphila 351 0 3 554 subfamily 12 0 3 352 554 genus 1 Azotobacter Azotobacter chroococcum 1 0 353 333 species species 209 354 0 1 Azotobacter vinelandii 468 42 0 5483 family 27 1 Moraxellaceae 761 genus 497 0 11 9 Psychrobacter 1 334543 1 0 160 species Psychrobacter arcticus 412 no rank 6 0 196806 0 1 571800 73 species Psychrobacter sp. G Psychrobacter sp. P11G5 1699624 0 1 species 60 80 species 1720344 1 0 Psychrobacter sp. AntiMn-1 Psychrobacter sp. P2G3 1699622 0 1 species 34 Psychrobacter sp. PRwf-1 species 80 349106 0 1 Psychrobacter sp. DAB_AL43B 1028416 1 0 85 species 31 species 0 1 45610 Psychrobacter urativorans Psychrobacter cryohalolentis 0 1 330922 species 49 Psychrobacter alimentarius 1 0 261164 species 100 2 genus 496 0 5 475 Moraxella 1 Moraxella bovoculi species 102 386891 1 0 Moraxella osloensis 34062 1 0 229 species Moraxella ovis species 72 29433 0 1 1 0 480 91 species Moraxella catarrhalis 49 genus 4199 25 0 469 Acinetobacter 1 202950 1 0 species 237 237 strain 1 0 62977 Acinetobacter sp. ADP1 species 150 108981 0 1 Acinetobacter schindleri Acinetobacter johnsonii 0 1 40214 species 135 Acinetobacter oleivorans 144 species 1148157 0 1 Acinetobacter radioresistens 188 species 40216 0 1 0 1 29430 species 151 Acinetobacter haemolyticus Acinetobacter bereziniae species 133 106648 0 1 Acinetobacter junii species 207 40215 1 0 909768 0 5 1591 species group 0 1 106654 species 111 Acinetobacter nosocomialis Acinetobacter calcoaceticus 0 1 471 213 species Acinetobacter baumannii species 543 470 1 0 Acinetobacter lactucae 1785128 1 0 136 species Acinetobacter pittii 588 species 48296 0 1 7 0 196816 no rank 767 Acinetobacter sp. ACNIH2 1758189 1 0 77 species Acinetobacter sp. TTH0-4 1 0 1646498 species 114 Acinetobacter sp. ACNIH1 species 171 1636603 0 1 1608473 0 1 77 species Acinetobacter sp. NCu2D-2 164 species 1 0 1808001 Acinetobacter sp. LoGeW2-3 Acinetobacter sp. TGL-Y2 species 66 1407071 0 1 species 98 0 1 2079596 Acinetobacter sp. SWBY1 Acinetobacter soli 79 species 487316 1 0 1789224 0 1 94 species Acinetobacter larvae Acinetobacter equi 1324350 1 0 species 155 119 species 1 0 756892 Acinetobacter indicus 1 Chromatiales 27 135613 0 44 order 3117 family 101 1 0 1738654 0 1 1738655 genus 101 species 101 1548547 1 0 Woeseia oceani 2 0 449719 family 202 1 Granulosicoccus 2 0 2 437504 202 genus 437505 1 0 species 200 Granulosicoccus antarcticus 0 2 451214 200 no rank 1 Thiohalobacter 2 0 1273155 genus 200 1 Thiohalobacter thiocyanaticus 0 1 585455 species 199 Wenzhouxiangellaceae 1 129 family 1676141 2 0 1 genus 128 1 0 1676142 Wenzhouxiangella marina species 128 1 0 1579979 1 Chromatiaceae 1046 15 0 1240 family 8 3 85072 2 0 188 genus 1 Allochromatium Allochromatium vinosum 1049 1 0 species 185 1 Nitrosococcus 4 0 1227 genus 185 1 Nitrosococcus oceani 0 1 1229 50 species Nitrosococcus watsonii species 66 473531 0 1 Nitrosococcus halophilus 68 species 133539 0 1 0 2 85076 genus 201 3 1 Marichromatium 37487 1 0 species 198 Marichromatium purpuratum 149 genus 13724 1 0 Thiocystis violascens species 149 73141 0 1 1980513 0 1 genus 48 1630141 1 0 48 species Candidatus Nitrosoglobus terrae 126 no rank 82569 1 0 Chromatiaceae bacterium 2141T.STBD.0c.01a 126 species 0 1 1978339 1 Thiodictyon 3 53392 0 2 genus 214 Candidatus Thiodictyon syntrophicum species 211 1166950 0 1 156885 1 0 genus 121 species 121 0 1 80679 Thioflavicoccus mobilis Halothiobacillaceae 1 133 family 0 4 255526 1 1 Halothiobacillus 109262 0 3 132 genus 7 Halothiobacillus neapolitanus 61 species 1 0 927 1 0 2636392 no rank 64 Halothiobacillus sp. LS2 64 species 1860122 1 0 family 1085 72276 0 17 14 Ectothiorhodospiraceae 1 genus 122 1051 0 1 0 1 2684909 122 no rank Ectothiorhodospira sp. BSL-9 species 122 1 0 1442136 1 135 genus 85108 2 0 Halorhodospira 1 134 species 0 1 1053 Halorhodospira halophila Acidihalobacter 1 6 genus 106 1765964 2 0 Acidihalobacter prosperus 0 1 160660 species 100 Spiribacter 1 1 114 genus 1335745 3 0 1335757 0 1 70 species Spiribacter curvatus 43 species 0 1 1335746 Spiribacter salinus 6 461 genus 0 6 106633 Thioalkalivibrio 1 2621013 0 1 41 no rank species 41 396595 0 1 Thioalkalivibrio sp. K90mix Thioalkalivibrio paradoxus 108010 0 1 73 species 114 species 106634 0 1 Thioalkalivibrio versutus species 141 0 1 1033854 Thioalkalivibrio sulfidiphilus species 86 1 0 186931 Thioalkalivibrio nitratireducens Alkalilimnicola 1 133 genus 133193 2 0 1 Alkalilimnicola ehrlichii 0 1 351052 132 species Methylococcales 1 6 1067 order 135618 11 0 9 1061 family 10 0 403 Methylococcaceae 1 416 5 0 genus 615 5 1 Methylomonas 172 no rank 0 1 2608980 1 0 1727196 species 172 Methylomonas sp. DH-1 Methylomonas denitrificans species 200 1 0 1538553 1 0 421 species 117 Methylomonas methanica 0 1 702114 121 species Methylomonas koyamae 145 genus 762296 1 0 Methylovulum psychrotolerans 1704499 0 1 145 species 1 142 genus 413 2 0 Methylococcus 1 Methylococcus capsulatus species 141 1 0 414 1 0 39773 150 genus 271065 1 0 150 species Methylomicrobium alcaliphilum 332 no rank 2 0 33811 endosymbiont of unidentified scaly snail isolate Monju 1248727 1 0 species 137 1 0 83406 195 species gamma proteobacterium HdN1 Alteromonadales 1 10048 order 135622 0 99 16 12 348 family 0 6 267893 Idiomarinaceae 1 1 Idiomarina 135575 5 0 336 genus 5 135577 1 0 94 species Idiomarina loihiensis 181 no rank 2614829 2 0 2100422 1 0 61 species Idiomarina sp. OT37-5b Idiomarina sp. X4 120 species 0 1 2055892 0 1 1096243 56 species Idiomarina piscisalsi 267892 0 2 184 family 1 Ferrimonas 4 0 2 44011 genus 184 180 species 44012 1 0 Ferrimonas balearica 267894 0 3 244 family 1 Psychromonas 3 0 67572 genus 244 3 2614957 0 1 no rank 96 Psychromonas sp. CNPT3 314282 1 0 96 species Psychromonas ingrahamii species 145 0 1 357794 133 family 2 0 267891 Moritella 1 133 genus 58050 2 0 5 Moritella viscosa 128 species 80854 1 0 1 Alteromonadaceae 28 0 72275 family 3140 24 1621534 1 0 145 genus 326544 1 0 145 species Paraglaciecola psychrophila Marinobacter 1 1279 genus 2742 10 0 21 1 0 330734 74 species Marinobacter psychrophilus Marinobacter hydrocarbonoclasticus 2743 1 0 species 284 0 1 1874317 species 63 Marinobacter salinus Marinobacter similis 1420916 0 1 species 114 1033846 1 0 140 species Marinobacter adhaerens species 224 1 0 1420917 Marinobacter salarius 83889 3 0 359 no rank 490759 0 1 88 species Marinobacter sp. BSs20148 Marinobacter sp. LQ44 172 species 1 0 1749259 Marinobacter sp. CP1 99 species 0 1 1671721 226 10 0 genus 1176 8 1 Alteromonas 1 0 28108 species 290 Alteromonas macleodii Alteromonas naphthalenivorans 715451 1 0 species 69 142 species 1 0 233316 Alteromonas stellipolaris Alteromonas australica 589873 1 0 67 species Alteromonas addita 1 0 287094 species 116 291 no rank 2614992 0 3 Alteromonas sp. Mac1 species 120 0 1 1777491 Alteromonas sp. RW2A1 1 0 1917158 species 80 Alteromonas sp. MB-3u-76 91 species 0 1 2058133 Alteromonas mediterranea 193 species 314275 1 0 Agarivorans 1 135 genus 0 2 261825 3 species 132 1 0 680279 Agarivorans gilvus 2 2 0 1751872 191 genus 1 Lacimicrobium Lacimicrobium alkaliphilum 1526571 1 0 189 species 89404 0 2 190 genus 2618684 0 1 no rank 98 Glaciecola sp. 4H-3-7+YE-5 species 98 0 1 983545 92 species 300231 0 1 Glaciecola nitratireducens 786 family 267889 7 0 7 0 6 28228 676 genus 1 Colwellia species 87 1967665 1 0 Colwellia beringensis no rank 446 196834 0 3 Colwellia sp. PAMC 21821 1816219 0 1 108 species Colwellia sp. MT41 species 137 0 1 58049 1 0 1816218 species 201 Colwellia sp. PAMC 20917 28229 1 0 species 136 Colwellia psychrerythraea genus 110 0 1 1518149 Thalassotalea crassostreae 1 0 1763536 110 species 1 Pseudoalteromonadaceae 25 0 267888 family 2663 11 Pseudoalteromonas 1 genus 2652 53246 24 0 39 Pseudoalteromonas luteoviolacea 43657 1 0 species 63 Pseudoalteromonas translucida 81 species 0 1 166935 105 species 28107 0 1 Pseudoalteromonas espejiana 1 0 298657 162 species Pseudoalteromonas spongiae Pseudoalteromonas tetraodonis 0 1 43659 83 species 93 species 1 0 28109 Pseudoalteromonas nigrifaciens species 146 314281 1 0 Pseudoalteromonas tunicata species 159 0 1 176102 Pseudoalteromonas agarivorans species 107 0 1 247523 Pseudoalteromonas aliena Pseudoalteromonas atlantica 1 0 288 187 species 194690 0 5 no rank 568 1 0 283699 species 145 Pseudoalteromonas sp. Bsw20308 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 0 1720343 species 101 1761891 0 1 species 104 Pseudoalteromonas sp. 13-15 species 130 0 1 1514074 Pseudoalteromonas sp. NC201 Pseudoalteromonas sp. SM9913 species 88 234831 0 1 267375 0 1 species 104 Pseudoalteromonas marina Pseudoalteromonas piscicida 1 0 43662 111 species 0 1 394751 species 69 Pseudoalteromonas arctica Pseudoalteromonas piratica 0 1 1348114 187 species 106 species 1 0 161398 Pseudoalteromonas phenolica Pseudoalteromonas issachenkonii species 106 152297 0 1 43658 1 0 species 102 Pseudoalteromonas rubra 228 0 1 species 74 Pseudoalteromonas haloplanktis 14 2534 family 25 0 267890 Shewanellaceae 1 Shewanella 1 genus 2520 22 24 0 41 Shewanella pealeana 119 species 70864 0 1 260364 1 0 69 species Shewanella marisflavi 1 0 2018305 species 99 Shewanella bicestrii Shewanella violacea 60217 1 0 120 species species 102 404011 1 0 Shewanella piezotolerans Shewanella denitrificans 192073 1 0 species 37 Shewanella putrefaciens species 94 24 1 0 593 no rank 6 0 196818 Shewanella sp. WE21 species 50 0 1 2029986 Shewanella sp. MR-4 species 122 60480 1 0 species 143 94122 1 0 Shewanella sp. ANA-3 Shewanella sp. Pdp11 0 1 2059264 75 species Shewanella sp. MR-7 1 0 60481 144 species Shewanella sp. W3-18-1 351745 1 0 59 species Shewanella woodyi 60961 1 0 species 131 234 species 1 0 62322 Shewanella baltica 0 1 359303 147 species Shewanella loihica 106 species 271097 1 0 Shewanella sediminis species 110 60478 1 0 Shewanella amazonensis 70863 1 0 79 species Shewanella oneidensis species 87 56812 0 1 Shewanella frigidimarina Shewanella halifaxensis 145 species 1 0 271098 1 0 93973 85 species Shewanella japonica species 122 225848 1 0 Shewanella psychrophila order 111 0 3 1775403 Sinobacteraceae 568386 1 0 family 1 2689614 2 0 family 110 1 Steroidobacter 2 469322 0 2 110 genus Steroidobacter denitrificans species 108 465721 1 0 435 order 5 0 1240482 50 435 family 0 5 1240483 Orbaceae 1 Frischella 1 137 genus 0 2 1335631 2 Frischella perrara 1 0 1267021 species 135 Gilliamella 1 6 248 genus 0 2 1193503 Gilliamella apicola 242 species 1196095 1 0 1 256 order 0 6 1692040 Acidiferrobacterales 1 Acidiferrobacteraceae 1 255 family 5 0 1692041 4 Sulfuricaulis 1 1 genus 152 1744881 0 2 Sulfuricaulis limicola species 151 1 0 1620215 Sulfurifustis 1 1 99 genus 0 2 1692042 species 98 1675686 0 1 Sulfurifustis variabilis no rank 802 118884 11 0 genus 121 1524249 0 1 Pseudohongiella spirulinae 1249552 0 1 121 species 0 1 198346 59 clade species 59 1 0 186490 Candidatus Baumannia cicadellinicola genus 145 655184 0 2 0 1 1705394 species 75 Candidatus Thioglobus autotrophicus species 70 0 1 1427364 Candidatus Thioglobus singularis 1 0 2 349742 genus 147 1 Sedimenticola Sedimenticola thiotaurini 1 0 1543721 species 146 32036 3 0 203 clade Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 1 0 82 species 57 species 0 1 410330 Calyptogena okutanii thioautotrophic gill symbiont 64 genus 1541743 1 0 64 species 386487 1 0 Candidatus Ruthia magnifica 1 Thiolapillus 1608298 0 2 genus 127 1 1 0 1076588 species 126 Thiolapillus brandeum 59 0 135619 order 5398 31 1 Oceanospirillales 286 family 0 2 255527 1 0 1445504 164 genus 1445505 0 1 species 164 Gynuella sunshinyii genus 122 230494 0 1 Reinekea forsetii 122 species 1336806 0 1 23 0 9 135620 family 837 1 Oceanospirillaceae genus 76 187492 1 0 187493 1 0 76 species Thalassolituus oleivorans 119 genus 1537406 0 1 119 species 1 0 1249553 Bacterioplanes sanyensis 1 0 188907 171 genus 1 0 188908 species 171 Oleispira antarctica 28253 0 3 252 genus 936476 1 0 91 species Marinomonas posidonica species 62 119864 1 0 Marinomonas mediterranea 196814 1 0 99 no rank 99 species 1 0 400668 Marinomonas sp. MWYL1 0 2 48075 196 genus 1 1 Marinobacterium 1821621 0 1 195 species Marinobacterium aestuarii 224372 0 8 family 910 4 1 Alcanivoracaceae Alcanivorax 1 13 734 genus 6 0 59753 species 99 1 0 59754 Alcanivorax borkumensis Alcanivorax xenomutans 1 0 1094342 171 species 0 1 285091 173 species Alcanivorax dieselolei 2638842 0 1 97 no rank 1 0 1113728 97 species Alcanivorax sp. NBRC 101098 181 species 1 0 1306787 Alcanivorax pacificus 0 1 2025617 172 genus Ketobacter alkanivorans 1917421 1 0 172 species 2 0 224379 142 family 1 Hahella 1 2 0 158481 genus 142 Hahella chejuensis 0 1 158327 141 species 1 Halomonadaceae 48 28256 29 0 family 2700 34 2745 0 15 1815 genus 1 Halomonas 213554 0 1 80 species Halomonas campaniensis 475662 1 0 species 126 Halomonas beimenensis Halomonas huangheensis 72 species 1 0 1178482 Halomonas hydrothermalis species 162 115561 0 1 Halomonas chromatireducens 108 species 0 1 507626 1089 no rank 2609666 0 8 174 species 1962264 1 0 Halomonas sp. 'Soap Lake #7' species 125 0 1 1504981 Halomonas sp. KO116 species 111 0 1 1610576 Halomonas sp. R57-5 Halomonas sp. GFAJ-1 0 1 1118153 108 species 1971364 1 0 species 100 Halomonas sp. GT Halomonas sp. 'Soap Lake #6' species 174 0 1 1949203 155 species 0 1 1883416 Halomonas sp. 1513 Halomonas sp. SF2003 2136172 0 1 142 species 1897729 1 0 species 144 Halomonas aestuarii 1 Cobetia 4 0 2 204286 211 genus 28258 0 1 207 species Cobetia marina genus 100 42054 0 1 Chromohalobacter salexigens species 100 158080 1 0 Kushneria 1 265 genus 504090 0 3 1 species 135 157779 1 0 Kushneria marisflavi Kushneria konosiri 129 species 698828 0 1 no rank 39 3 0 114403 genus 24 0 1 235572 24 species 0 1 91844 Candidatus Portiera aleyrodidarum genus 13 1 0 1495768 species 13 1 0 1495769 Candidatus Evansia muelleri genus 2 1 0 114185 Candidatus Carsonella ruddii 114186 0 1 2 species 1 Halotalea 0 2 376488 genus 107 3 376489 0 1 species 104 Halotalea alkalilenta Salinicola 1 1 genus 115 404432 2 0 1 0 1771309 114 species Salinicola tamaricis 1920240 0 6 family 362 3 1 Kangiellaceae Kangiella 1 2 genus 359 261963 0 5 1 0 261964 101 species Kangiella koreensis 49 species 914150 1 0 Kangiella geojedonensis species 131 1 0 1144748 Kangiella sediminilitoris 1561924 1 0 species 76 Kangiella profundi 0 2 191033 family 130 1 1 Oleiphilaceae 141450 1 0 genus 129 species 129 0 1 141451 Oleiphilus messinensis order 66814 242 0 91347 189 Enterobacterales 1 38 0 21 1903414 2573 family 1 Morganellaceae Xenorhabdus 1 10 611 genus 6 0 626 Xenorhabdus bovienii 151 species 0 1 40576 141 species 628 0 1 Xenorhabdus nematophila Xenorhabdus doucetiae 351671 1 0 species 123 40577 1 0 species 109 Xenorhabdus poinarii species 77 351679 0 1 Xenorhabdus hominickii Proteus 1 602 genus 0 3 583 35 Proteus vulgaris 0 1 585 169 species 584 1 0 398 species Proteus mirabilis 637 1 0 genus 45 1 0 634113 species 45 Arsenophonus symbiont of Lipoptena fortisetosa Photorhabdus 1 genus 373 29487 0 4 7 Photorhabdus temperata 0 1 574560 species 94 1 0 291112 species 146 Photorhabdus asymbiotica 29488 1 0 126 species Photorhabdus luminescens 59 424 genus 581 0 2 Morganella 1 1 0 582 species 365 Morganella morganii genus 480 586 0 4 5 Providencia 1 126385 1 0 83 species Providencia alcalifaciens species 209 588 1 0 Providencia stuartii Providencia rettgeri 183 species 587 1 0 13 3801 family 1903409 26 0 Erwiniaceae 1 480 genus 32199 0 1 1 0 9 species 480 Buchnera aphidicola 68 1729 genus 0 11 53335 Pantoea 1 Pantoea ananatis 201 species 553 0 1 284 species group 1654067 1 0 1 0 549 species 284 Pantoea agglomerans no rank 522 2630326 0 3 species 179 1 0 1484158 Pantoea sp. PSNIH1 1484157 1 0 species 136 Pantoea sp. PSNIH2 207 species 592316 0 1 Pantoea sp. At-9b species 71 1 0 1235990 Candidatus Pantoea carbekii Pantoea alhagi 1891675 1 0 113 species 0 1 470934 263 species Pantoea vagans 0 1 66269 91 species Pantoea stewartii 0 1 1076550 116 species Pantoea rwandensis genus 48 0 1 51228 Wigglesworthia glossinidia species 48 51229 1 0 4 82986 0 2 199 genus 1 Tatumella species 195 53336 1 0 Tatumella citrea 2100764 0 2 genus 331 species 165 665914 0 1 Pantoea gaviniae 166 species 665913 1 0 Pantoea calida 1 Erwinia 49 551 0 8 genus 1001 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 0 1 44 species species 134 0 1 552 Erwinia amylovora 0 1 182337 species 206 Erwinia billingiae 1 0 338565 species 168 Erwinia tasmaniensis no rank 131 2622719 1 0 Erwinia sp. Ejp617 215689 0 1 131 species species 117 79967 1 0 Erwinia pyrifoliae Erwinia gerundensis 0 1 1619313 species 152 no rank 228 451511 2 0 702 2 0 genus 228 4 1 Plesiomonas 0 1 703 species 224 Plesiomonas shigelloides Yersiniaceae 1 family 6835 1903411 0 39 31 1 0 1565532 genus 3 Rouxiella Gibbsiella 1 1 270 genus 929812 0 2 929813 1 0 269 species Gibbsiella quercinecans 2 0 1745211 143 genus 3 1 Chania Chania multitudinisentens 140 species 1639108 0 1 Rahnella 1 18 genus 512 4 0 34037 2635087 0 2 no rank 317 Rouxiella sp. ERMR1:05 152 species 1805933 1 0 Rahnella sp. Y9602 1 0 741091 species 165 Rahnella aquatilis 177 species 1 0 34038 167 genus 3854 0 16 613 Serratia 1 0 1 61651 182 species Serratia ficaria 0 1 615 903 species Serratia marcescens Serratia plymuthica species 292 0 1 82996 species 198 0 1 614 Serratia liquefaciens 28151 1 0 species 101 Serratia proteamaculans no rank 1343 2647522 0 8 488142 0 1 species 199 Serratia sp. SCBI 1 0 768490 species 117 Serratia sp. AS12 Serratia sp. AS13 768493 1 0 species 117 104623 0 1 species 124 Serratia sp. ATCC 39006 species 181 1327989 0 1 Serratia sp. FS14 Serratia sp. FGI94 184 species 0 1 671990 Serratia sp. SSNIH1 1758196 1 0 178 species Serratia sp. MYb239 2033438 0 1 243 species Serratia rubidaea 1 0 61652 species 259 1 0 47917 species 409 Serratia fonticola 35 2022 genus 629 0 13 Yersinia 1 Yersinia aleksiciae species 89 1 0 263819 0 1 29484 species 323 Yersinia frederiksenii Yersinia aldovae species 117 29483 1 0 Yersinia kristensenii species 135 1 0 28152 species group 385 0 3 1649845 Yersinia similis 367190 1 0 117 species Yersinia pseudotuberculosis species 164 633 1 0 Yersinia pestis 632 1 0 species 104 Yersinia intermedia 631 1 0 122 species Yersinia ruckeri 1 0 29486 175 species no rank 115 2653513 1 0 0 1 1839800 species 115 Yersinia sp. FDAARGOS_228 630 0 1 species 415 Yersinia enterocolitica Yersinia rohdei 111 species 0 1 29485 Hafniaceae 1 1 1834 family 1903412 14 0 46 8 0 635 1343 genus 1 Edwardsiella 363 species 636 1 0 Edwardsiella tarda Edwardsiella anguillarum species 134 1 0 1821960 Edwardsiella piscicida 150 species 0 1 1263550 Edwardsiella ictaluri 0 1 67780 species 134 1 0 93378 157 species Edwardsiella hoshinae 359 no rank 2676541 0 2 species 134 1650654 0 1 Edwardsiella sp. LADL05-105 Edwardsiella sp. EA181011 1578828 0 1 species 225 102 genus 0 2 82982 3 Obesumbacterium 1 Obesumbacterium proteus 82983 1 0 species 99 genus 388 0 3 568 9 Hafnia 1 no rank 92 2621980 1 0 species 92 1 0 1848580 Hafnia sp. CBA7124 Hafnia alvei 287 species 1 0 569 14 family 3455 1903410 0 20 Pectobacteriaceae 1 436 genus 5 0 84565 10 Sodalis 1 1 0 1239307 species 150 Sodalis praecaptivus Candidatus Sodalis pierantonius 1486991 0 1 species 124 1 0 63612 135 species Sodalis glossinidius Sodalis endosymbiont of Henestaris halophilus 1929246 1 0 17 species 1 Dickeya 204037 0 6 1392 genus 40 0 1 1778540 species 208 Dickeya fangzhongdai 471 species 1089444 0 1 Dickeya solani 0 1 204038 species 208 Dickeya dadantii species 269 204042 1 0 Dickeya zeae 1 0 204039 196 species Dickeya dianthicola 1 Brenneria 5 2 0 71655 genus 215 Brenneria goodwinii 210 species 1109412 0 1 1 Pectobacterium 0 6 122277 1398 genus 33 species 142 1905730 1 0 Pectobacterium parmentieri 2042057 1 0 229 species Pectobacterium polaris 55208 0 1 161 species Pectobacterium wasabiae Pectobacterium carotovorum 1 0 554 678 species Pectobacterium atrosepticum 1 0 29471 155 species family 141 1903416 0 2 6 82984 0 2 141 genus 1 Pragia 135 species 1 0 82985 Pragia fontium 326 543 0 117 family 47758 1 Enterobacteriaceae 19 0 191675 553 no rank 553 clade 19 0 84563 27 clade 0 1 199891 1835721 1 0 27 species secondary endosymbiont of Trabutina mannipara Candidatus Tachikawaea 1 56 genus 2 0 1682492 1 species 55 1410383 1 0 Candidatus Tachikawaea gelatinosa 0 1 1906657 34 genus Candidatus Doolittlea endobia 1 0 1778262 34 species 3 0 2 1906659 genus 14 1 Candidatus Hoaglandella 1 0 1778263 species 11 Candidatus Hoaglandella endobia 0 7 84564 clade 222 Candidatus Blochmannia 1 222 genus 0 7 203804 1 Candidatus Blochmannia chromaiodes 1 0 251542 7 species 63 species 251535 1 0 Candidatus Blochmannia vafer 21 species 0 1 101534 Candidatus Blochmannia pennsylvanicus species 90 1 0 203907 Candidatus Blochmannia floridanus 40 no rank 0 2 711328 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 0 1 17 species 23 species 1505597 0 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1906660 0 1 11 genus 1778264 1 0 11 species Candidatus Mikella endobia 146507 4 0 134 clade 1199245 0 1 74 species secondary endosymbiont of Ctenarytaina eucalypti 27 species 134287 0 1 secondary endosymbiont of Heteropsylla cubana 1 genus 33 2 0 568987 Candidatus Hamiltonella 1 species 32 0 1 138072 Candidatus Hamiltonella defensa 55 genus 0 1 1906661 species 55 0 1 1070130 Candidatus Gullanella endobia 409304 1 0 genus 46 46 species 0 1 168169 Candidatus Ishikawaella capsulata Kluyvera 1 167 genus 2 0 579 3 Kluyvera intermedia 1 0 61648 164 species 5 563 genus 4 0 1330545 Lelliottia 1 69220 1 0 120 species Lelliottia nimipressuralis 61646 0 1 272 species Lelliottia amnigena 166 species 0 1 1907578 Lelliottia jeotgali 1330546 2 0 472 genus Pluralibacter gergoviae 253 species 1 0 61647 [Enterobacter] lignolyticus 1334193 1 0 219 species genus 78 401618 1 0 78 species 1 0 401619 Candidatus Riesia pediculicola Cronobacter 1 25 1225 genus 413496 0 8 species 133 1 0 413503 Cronobacter malonaticus Cronobacter sakazakii species 283 28141 0 1 161 species 413497 1 0 Cronobacter dublinensis 135 species 1 0 413502 Cronobacter turicensis species 150 0 1 1163710 Cronobacter condimenti 413501 0 1 species 188 Cronobacter muytjensii Cronobacter universalis 1 0 535744 species 150 4402 genus 0 22 547 280 Enterobacter 1 0 12 354276 species group 3054 1 0 208224 144 species Enterobacter kobei Enterobacter cloacae 0 1 550 1226 species 124 species 1 0 69218 Enterobacter cancerogenus 322 no rank 0 3 2757714 1 0 1915310 species 91 Enterobacter cloacae complex sp. ECNIH7 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 1 2077137 species 122 Enterobacter cloacae complex bacterium 109 species 0 1 2027919 Enterobacter asburiae 0 1 61645 378 species 139 species 0 1 299767 Enterobacter ludwigii species 61 1812935 1 0 Enterobacter cloacae complex 'Hoffmann cluster IV' Enterobacter hormaechei 1 species 660 158836 0 3 481 Enterobacter xiangfangensis subspecies 83 0 1 1296536 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 96 1812934 0 1 2608935 9 0 1068 no rank Enterobacter sp. 638 399742 0 1 122 species species 193 1914861 1 0 Enterobacter sp. SA187 Enterobacter sp. R4-368 155 species 0 1 1166130 species 110 0 1 1827481 Enterobacter sp. ODB01 Enterobacter sp. CRENT-193 1 0 2051905 species 127 Enterobacter sp. FY-07 153 species 1 0 1692238 Enterobacter sp. Crenshaw species 70 1 0 1977566 Enterobacter sp. E20 68 species 1560339 0 1 70 species 1868135 1 0 Enterobacter sp. HK169 1 Salmonella 590 0 3 2239 genus 3 Salmonella enterica 28901 0 1 species 1930 Salmonella bongori 54736 1 0 species 306 88 14 0 544 3643 genus 1 Citrobacter 35703 1 0 494 species Citrobacter amalonaticus 2644389 2 0 304 no rank 122 species 1920110 1 0 Citrobacter sp. CFNIH10 1702170 0 1 species 182 Citrobacter sp. FDAARGOS_156 Citrobacter farmeri 137 species 67824 0 1 0 7 1344959 1717 species group Citrobacter freundii species 710 546 0 1 Citrobacter freundii complex sp. CFNIH3 1 0 2077147 158 species Citrobacter freundii complex sp. CFNIH9 2077149 1 0 96 species Citrobacter braakii species 265 57706 0 1 Citrobacter freundii complex sp. CFNIH2 0 1 2066049 123 species species 147 1 0 2077148 Citrobacter freundii complex sp. CFNIH4 67827 0 1 218 species Citrobacter werkmanii 168 species 67825 1 0 Citrobacter rodentium species 735 0 1 545 Citrobacter koseri 36866 0 5 no rank 785 693444 1 0 species 179 Enterobacteriaceae bacterium strain FGI 57 species 142 0 1 891974 Plautia stali symbiont Enterobacteriaceae bacterium ENNIH3 1920128 0 1 species 147 Enterobacteriaceae bacterium ENNIH2 1920109 0 1 169 species Enterobacteriaceae bacterium ENNIH1 0 1 2066051 148 species 0 1 1335483 214 genus species 214 1 0 563 Shimwellia blattae 1 Raoultella 3 0 160674 662 genus 16 Raoultella planticola 230 species 1 0 575 54291 1 0 species 416 Raoultella ornithinolytica genus 23133 5 0 561 66 Escherichia 1 1 0 1499973 209 species Escherichia marmotae Escherichia coli 0 1 562 21292 species Escherichia fergusonii species 594 564 1 0 972 species 208962 0 1 Escherichia albertii 1 Cedecea 0 2 158483 genus 466 7 0 1 158822 459 species Cedecea neteri 5431 genus 10 0 570 176 Klebsiella 1 no rank 362 0 2 2608929 156 species 0 1 1905288 Klebsiella sp. LTGPAF-6F 206 species 1934254 1 0 Klebsiella sp. M5al Klebsiella quasipneumoniae species 302 1463165 0 1 Klebsiella oxytoca species 713 0 1 571 Klebsiella variicola species 467 1 0 244366 211 species 1 0 2026240 Klebsiella quasivariicola 1 0 1134687 409 species Klebsiella michiganensis 548 0 1 species 803 Klebsiella aerogenes 1 0 573 species 1988 Klebsiella pneumoniae 1 Shigella 92 4 0 620 genus 2098 2629414 1 0 no rank 783 1813821 0 1 species 783 Shigella sp. PAMC 28760 Shigella dysenteriae 622 1 0 752 species 471 species 1 0 623 Shigella flexneri 0 1 1048757 genus 19 species 19 1048758 1 0 Candidatus Moranella endobia 1330547 0 5 661 genus 1 1 Kosakonia Kosakonia oryzae 140 species 0 1 497725 176 species 208223 1 0 Kosakonia cowanii Kosakonia sacchari 138 species 1158459 1 0 Kosakonia radicincitans species 206 283686 1 0 Leclercia 1 575 genus 83654 4 0 13 2 0 2627398 no rank 412 Leclercia sp. LSNIH1 species 234 0 1 1920114 Leclercia sp. LSNIH3 1 0 1920116 species 178 Leclercia adecarboxylata species 150 1 0 83655 1 18 0 118969 1874 order 1 Legionellales 118968 0 3 340 family 0 2 776 296 genus 777 0 1 221 species Coxiella burnetii no rank 75 2676648 1 0 325775 1 0 species 75 Coxiella endosymbiont of Amblyomma americanum 44 no rank 134284 0 1 1592897 0 1 44 species Coxiella-like endosymbiont 1 0 14 444 1533 family 1 Legionellaceae 0 1 465 46 genus 46 species 0 1 451 Tatlockia micdadei Legionella 1 genus 1486 445 12 0 2 Legionella endosymbiont of Polyplax serrata 1 0 2005262 37 species 117 species 66969 0 1 Legionella waltersii 90 species 1 0 28087 Legionella sainthelensi Legionella fallonii species 104 1 0 96230 Legionella oakridgensis 75 species 29423 0 1 Legionella lansingensis 40 species 45067 1 0 Legionella clemsonensis 85 species 1 0 1867846 Legionella pneumophila species 499 1 0 446 133 species 449 0 1 Legionella hackeliae Legionella longbeachae 450 1 0 species 233 Legionella spiritensis species 71 452 0 1 1 Pasteurellales 1 28 0 135625 4576 order Pasteurellaceae 1 119 family 4575 27 0 712 5 359 genus 745 3 0 Pasteurella 1 747 1 0 species 229 Pasteurella multocida Pasteurella dagmatis 754 1 0 species 125 525 genus 3 0 75984 Mannheimia haemolytica 0 1 75985 189 species no rank 125 2645054 1 0 1432056 0 1 125 species Mannheimia sp. USDA-ARS-USMARC-1261 Mannheimia varigena 85404 0 1 species 211 557 genus 1 0 476528 Bibersteinia trehalosi species 557 47735 1 0 1 151 genus 155493 0 2 Gallibacterium 1 Gallibacterium anatis 0 1 750 150 species Haemophilus 1 genus 1304 0 6 724 10 363 species 727 1 0 Haemophilus influenzae [Haemophilus] ducreyi 730 0 1 species 555 Haemophilus pittmaniae 249188 0 1 species 90 0 1 2609962 no rank 109 Haemophilus sp. oral taxon 036 species 109 1 0 712310 177 species 0 1 729 Haemophilus parainfluenzae 244 genus 214906 1 0 1 0 731 species 244 Histophilus somni 182 genus 1 0 697331 species 182 1 0 157673 [Mannheimia] succiniciproducens 2094023 1 0 genus 206 Glaesserella parasuis species 206 0 1 738 1 Aggregatibacter 2 0 3 416916 333 genus Aggregatibacter aphrophilus 1 0 732 species 144 Aggregatibacter actinomycetemcomitans 0 1 714 187 species Actinobacillus 1 3 595 genus 5 0 713 Actinobacillus suis 162 species 1 0 716 Actinobacillus equuli 1 0 718 species 100 species 204 715 1 0 Actinobacillus pleuropneumoniae Actinobacillus succinogenes species 126 67854 0 1 2 28 0 72273 2756 order 1 Thiotrichales 212 family 0 4 135617 Beggiatoa 1 95 genus 1021 2 0 1 288004 0 1 species 94 Beggiatoa leptomitoformis 1 Thioploca 1 0 2 40751 genus 117 116 species 40754 0 1 Thioploca ingrica 1 Piscirickettsiaceae 135616 0 10 family 1113 11 0 3 34067 221 genus Cycloclasticus zancles species 77 0 1 1329899 no rank 144 2 0 2621467 Cycloclasticus sp. P1 78 species 385025 0 1 728003 0 1 species 66 Cycloclasticus sp. PY97N 1 0 1237 102 genus species 102 1238 0 1 Piscirickettsia salmonis 40222 0 2 534 genus 279 species 754477 1 0 Methylophaga frappieri 0 1 754476 species 255 Methylophaga nitratireducenticrescens 2 0 933 169 genus Thiomicrospira aerophila 92245 1 0 species 132 Thiomicrospira cyclica 147268 1 0 37 species 76 genus 0 1 28884 76 species 1 0 39765 Hydrogenovibrio crunogenus 34064 0 13 family 1429 1 0 1869285 46 genus species 46 0 1 594679 Allofrancisella guangzhouensis 1383 genus 262 12 0 11 Francisella 1 1542390 0 1 species 109 Francisella sp. CA97-1460 Francisella halioticida 1 0 549298 species 102 Francisella hispaniensis 1 0 622488 species 83 Francisella sp. TX077310 species 161 1 0 573570 Francisella persica species 67 1 0 954 2610885 2 0 no rank 165 Francisella sp. FSC1006 1547445 0 1 80 species Francisella sp. MA067296 1 0 475375 species 85 Francisella noatunensis species 98 657445 0 1 Francisella philomiragia 28110 1 0 species 167 Francisella sp. TX077308 573569 1 0 64 species Francisella tularensis species 356 1 0 263 200940 0 6 phylum 295 67799 6 0 class 295 Thermodesulfobacteriales 1 2 295 order 0 6 188710 1 family 293 188711 0 5 Thermodesulfobacteriaceae 1 0 1 241192 genus 63 1 0 171695 63 species Thermodesulfatator indicus genus 144 0 2 1740 Thermodesulfobacterium geofontis 1295609 0 1 72 species Thermodesulfobacterium commune 1 0 1741 species 72 0 1 444090 85 genus 1 0 1653476 85 species Caldimicrobium thiodismutans 0 2 68297 236 phylum 236 class 203486 0 2 order 236 203487 0 2 203488 0 2 236 family 2 0 13 genus 236 137 species 14 1 0 Dictyoglomus thermophilum 0 1 513050 species 99 Dictyoglomus turgidum phylum 7724 32066 22 0 5 203490 0 22 7724 class 1 Fusobacteriia 203491 21 0 7719 order 19 1 Fusobacteriales 0 9 1129771 1911 family 3 1 Leptotrichiaceae 168808 1 0 genus 207 Sneathia amnii 187101 1 0 207 species 34104 0 1 genus 335 Streptobacillus moniliformis 335 species 34105 1 0 genus 1030 0 5 32067 17 Leptotrichia 1 705 no rank 2633022 0 3 286 species 712357 1 0 Leptotrichia sp. oral taxon 212 201 species 1 0 712368 Leptotrichia sp. oral taxon 498 1785996 0 1 218 species Leptotrichia sp. oral taxon 847 Leptotrichia buccalis species 308 0 1 40542 genus 336 32068 1 0 species 336 826 0 1 Sebaldella termitidis 10 family 5789 203492 0 11 Fusobacteriaceae 1 1 Fusobacterium 14 9 0 848 genus 5595 Fusobacterium gonidiaformans 262 species 0 1 849 Fusobacterium mortiferum 850 1 0 species 342 Fusobacterium varium 654 species 856 0 1 Fusobacterium nucleatum 1863 species 851 0 1 Fusobacterium ulcerans 861 1 0 473 species 859 1 0 species 304 Fusobacterium necrophorum Fusobacterium hwasookii 562 species 1 0 1583098 Fusobacterium periodonticum 1121 species 1 0 860 0 1 167639 genus 184 Ilyobacter polytropus 0 1 167642 184 species phylum 202 0 3 200938 class 202 118001 3 0 1 Chrysiogenales 1 0 3 189769 order 202 Chrysiogenaceae 1 3 201 family 2 0 189770 393029 0 1 198 genus 936456 1 0 198 species Desulfurispirillum indicum 2 0 1930617 phylum 188 188 class 2 0 1962850 Calditrichales 1 2 188 order 1962852 2 0 family 186 1962854 1 0 genus 186 187144 1 0 186 species 187145 1 0 Caldithrix abyssi 0 325 1783270 clade 2287365 1 0 456828 96 phylum 96 genus 0 1 456826 Candidatus Cloacimonas acidaminovorans 456827 1 0 species 96 phylum 422 0 8 142182 2 422 class 0 8 219685 Gemmatimonadetes 1 3 0 7 219686 420 order 1 Gemmatimonadales Gemmatimonadaceae 1 6 family 417 219687 0 6 genus 229 173479 0 3 6 Gemmatimonas 1 1 0 1379270 species 105 Gemmatimonas phototrophica 118 species 173480 0 1 Gemmatimonas aurantiaca 1 genus 182 1706036 0 2 Gemmatirosa 1 0 1 861299 181 species Gemmatirosa kalamazoonesis 2286537 clade 68336 313 0 phylum 2283910 976 0 291 5 Bacteroidetes 1 1937959 5 0 class 531 1936988 0 5 order 531 1 1 Saprospirales family 376 1937961 0 1 1 0 2349 genus 376 2350 0 1 species 376 Haliscomenobacter hydrossis 1 Saprospiraceae 3 0 89374 family 154 5 1007 2 0 genus 149 1 1 Saprospira Saprospira grandis 1 0 1008 148 species 16 order 574 1100069 0 6 Bacteroidetes Order II. Incertae sedis 1 Rhodothermaceae 1 family 558 563843 0 5 2 146918 1 0 107 genus species 107 1 0 146919 Salinibacter ruber 1196022 1 0 no rank 197 1 0 1779382 197 species Rhodothermaceae bacterium RA 29548 2 0 genus 252 1 1 Rhodothermus Rhodothermus marinus 251 species 1 0 29549 20 class 2212783 0 68 200643 Bacteroidia 1 order 2028 10 0 1970189 1 Marinifilaceae 1 1573805 2 0 648 family genus 647 2060722 0 1 647 species 1717717 0 1 Marinifilaceae bacterium SPP2 1 Prolixibacteraceae 3 0 1471398 family 773 1 1 genus 772 0 2 1471399 Draconibacterium 1 Draconibacterium orientale 771 species 1168034 0 1 3 345 family 3 0 558415 Marinilabiliaceae 1 genus 342 1193324 0 2 1 Alkalitalea 1 Alkalitalea saponilacus 1 0 889453 341 species 1970190 2 0 family 262 2 0 1970191 genus 262 1 1 Salinivirga Salinivirga cyanobacteriivorans species 261 1307839 1 0 135 order 2210735 171549 0 57 Bacteroidales 1 1 Bacteroidaceae 11 11 0 815 family 693192 17241 0 10 816 genus 693181 1 Bacteroides Bacteroides heparinolyticus 1 0 28113 species 31175 Bacteroides caecimuris species 66154 0 1 1796613 46425 species 1 0 246787 Bacteroides cellulosilyticus 1 0 290053 species 42713 Bacteroides helcogenes Bacteroides caccae 1 0 47678 83886 species Bacteroides ovatus species 127588 28116 0 1 28119 0 1 species 27417 Bacteroides zoogleoformans 818 0 1 species 121036 Bacteroides thetaiotaomicron 129546 species 1 0 817 Bacteroides fragilis family 32536 1853231 0 2 1 Odoribacter 2 0 283168 genus 32536 4 Odoribacter splanchnicus species 32532 28118 0 1 1 family 3988 0 7 2005520 Dysgonamonadaceae 1 1 Fermentimonas 0 2 1784836 genus 1077 4 species 1073 1562970 0 1 Fermentimonas caenicola Proteiniphilum 1 genus 1481 2 0 294702 2 1479 species 1 0 1642647 Proteiniphilum saccharofermentans 1 1429 genus 2 0 307628 Petrimonas 1 Petrimonas mucosa 1428 species 1642646 1 0 1 2005519 0 3 38115 family 1 Barnesiellaceae 2 0 397864 genus 38114 11 1 Barnesiella species 38103 397865 1 0 Barnesiella viscericola family 17533 171550 0 3 1 0 1611681 443 genus Mucinivorans hirudinis 443 species 0 1 1433126 15 239759 0 2 genus 17090 1 Alistipes Alistipes finegoldii 0 1 214856 species 17075 333046 0 5 no rank 1046664 1 Candidatus Azobacteroides 2 0 2 511434 457 genus 455 species 0 1 511435 Candidatus Azobacteroides pseudotrichonymphae 3 0 909656 genus 1046207 859251 species 821 0 1 Bacteroides vulgatus 43712 species 0 1 376805 Bacteroides salanitronis 143244 species 0 1 357276 Bacteroides dorei 2005523 2 0 1270 family 1 346096 2 0 genus 1270 1 Paludibacter 1269 species 185300 1 0 Paludibacter propionicigenes 0 7 2005525 family 312163 37 1 Tannerellaceae Tannerella 1 14 genus 5357 3 0 195950 1 0 2620507 1449 no rank Tannerella sp. oral taxon HOT-286 species 1449 1 0 712710 species 3894 28112 0 1 Tannerella forsythia 32 306769 genus 375288 3 0 Parabacteroides 1 1 0 823 87831 species Parabacteroides distasonis 0 1 2649774 no rank 218906 Parabacteroides sp. CT06 2025876 1 0 218906 species 1 Porphyromonadaceae 11 0 4 171551 family 3246 6 3235 genus 836 0 3 Porphyromonas 1 Porphyromonas asaccharolytica 1 0 28123 647 species Porphyromonas gingivalis 2582 species 1 0 837 377 no rank 0 1 185291 Bacteroidales bacterium CF 0 1 1400053 species 377 Prevotellaceae 1 1 61516 family 171552 0 11 1 Prevotella 838 10 0 genus 61515 133 1 0 28129 species 1851 Prevotella denticola Prevotella dentalis 52227 0 1 2813 species species 5156 1177574 0 1 Prevotella jejuni 1418 species 1 0 76123 Prevotella enoeca 0 1 589436 species 1857 Prevotella fusca 1080 no rank 1 0 2638335 Prevotella sp. oral taxon 299 species 1080 0 1 652716 Prevotella melaninogenica 1 0 28132 species 3562 2576 species 839 1 0 Prevotella ruminicola 41069 species 1 0 28131 Prevotella intermedia 8175 class 0 21 117747 21 0 200666 8175 order 13 1 Sphingobacteriales 20 0 84566 8162 family 19 1 Sphingobacteriaceae genus 534 1 0 929509 Solitalea canadensis 995 0 1 534 species 4 0 423349 genus 941 32 1 Mucilaginibacter 1550579 0 1 342 species Mucilaginibacter gotjawali 296 no rank 1 0 2617802 species 296 1300914 0 1 Mucilaginibacter sp. PAMC 26640 271 species 1234841 0 1 Mucilaginibacter sp. BJC16-A31 420 no rank 84568 0 1 1 0 1986952 420 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 Pedobacter 1 4 genus 3645 6 0 84567 species 2005 1 0 188932 Pedobacter cryoconitis Pedobacter heparinus 984 0 1 species 427 species 404 1 0 430522 Pedobacter steynii 1 0 363852 335 species Pedobacter ginsengisoli 2628915 1 0 no rank 470 470 species 1727164 1 0 Pedobacter sp. PACM 27299 444 genus 1649482 1 0 151895 1 0 species 444 Pseudopedobacter saltans 0 6 28453 genus 2159 2 1 Sphingobacterium 1740 no rank 0 4 2609468 428 species 743722 0 1 Sphingobacterium sp. 21 species 448 1933220 0 1 Sphingobacterium sp. B29 Sphingobacterium sp. ML3W species 395 1538644 0 1 Sphingobacterium sp. G1-14 469 species 0 1 2003121 0 1 1010 417 species Sphingobacterium mizutaii Cytophagia 1 14 10729 class 43 0 768503 1 Cytophagales 31 0 42 768507 10715 order 633 family 1853234 0 2 1 Persicobacter 59740 0 2 genus 633 74 2664020 1 0 559 no rank Persicobacter sp. JZB09 1 0 1085624 559 species family 328 1 0 1937968 1 0 1937972 328 genus Bernardetia litoralis 999 1 0 328 species 2762301 1 0 family 274 genus 274 0 1 869806 1006 0 1 274 species Marivirga tractuosa family 142 1501348 0 3 1 Amoebophilaceae 1 273135 1 0 68 genus 68 no rank 2641185 1 0 species 68 249402 0 1 Cardinium endosymbiont of Encarsia pergandiella genus 73 281119 1 0 Candidatus Amoebophilus asiaticus 281120 1 0 species 73 1119 family 563798 0 5 246875 1 0 genus 136 Algoriphagus sp. M8-2 136 species 1727163 1 0 genus 167 0 1 232244 Belliella baltica species 167 232259 1 0 345 genus 1 0 390846 Echinicola vietnamensis 1 0 390884 345 species 471 genus 0 2 68288 1 0 104 283 species Cyclobacterium marinum Cyclobacterium amurskyense species 188 0 1 320787 15 0 1853232 family 4256 14 1 Hymenobacteraceae 3 0 1379908 904 genus 2639626 0 2 no rank 568 Rufibacter sp. DG31D 1 0 1379910 species 269 299 species 1 0 1379909 Rufibacter sp. DG15C 512763 1 0 336 species Rufibacter tibetensis Hymenobacter 1 20 2577 genus 8 0 89966 1446467 1 0 species 423 Hymenobacter swuensis no rank 1744 0 5 2615202 347 species 1484118 1 0 Hymenobacter sp. PAMC 26628 Hymenobacter sp. DG25B species 376 0 1 1385664 268 species 1385663 1 0 Hymenobacter sp. DG25A species 394 1484116 1 0 Hymenobacter sp. PAMC 26554 Hymenobacter sp. APR13 359 species 0 1 1356852 1 0 1411621 species 390 Hymenobacter sedentarius 2 761 genus 323449 3 0 Pontibacter 1 Pontibacter akesuensis 388950 1 0 361 species 1 0 400092 398 species Pontibacter korlensis family 3007 89373 0 11 5 Cytophagaceae 1 107 0 5 genus 1329 Spirosoma montaniterrae 1 0 1178516 249 species Spirosoma aerolatum 0 1 1211326 species 263 Spirosoma sp. HA7 species 297 2057025 1 0 Spirosoma radiotolerans species 238 1379870 1 0 Spirosoma rigui 282 species 0 1 564064 861914 0 1 genus 238 no rank 238 0 1 2620963 species 238 1 0 1834519 Fibrella sp. ES10-3-2-2 282 genus 1 0 120831 0 1 94254 species 282 Dyadobacter fermentans 978 1 0 genus 307 species 307 0 1 985 Cytophaga hutchinsonii 0 1 319458 404 genus 404 species 0 1 316068 Leadbetterella byssophila genus 442 1 0 105 Runella slithyformis 442 species 106 0 1 1 family 925 0 3 200667 Flammeovirgaceae 1 genus 551 59739 0 1 no rank 551 2637820 1 0 551 species 0 1 1191459 Flammeovirga sp. MY04 340671 1 0 373 no rank Flammeovirgaceae bacterium 311 1257021 1 0 species 373 Chitinophagia 1 3103 class 1853228 13 0 1 3102 order 12 0 1853229 3 Chitinophagales 1 3099 family 0 11 563835 16 Chitinophagaceae 1 2 0 79328 genus 830 79329 1 0 species 606 Chitinophaga pinensis Chitinophagaceae bacterium 13 species 224 2029983 0 1 1 Niastella 7 354354 2 0 423 genus Niastella koreensis 416 species 1 0 354356 1 2 0 649460 502 genus 1 Filimonas 477680 1 0 501 species Filimonas lacunae 398041 0 1 196 genus Flavisolibacter tropicus 1492898 0 1 196 species 379899 0 2 820 genus 1176587 1 0 species 329 Niabella ginsenosidivorans Niabella soli species 491 446683 1 0 genus 312 0 1 1769012 2636138 1 0 no rank 312 Arachidicoccus sp. BS20 1850526 1 0 species 312 1 Flavobacteriia 134 0 117743 class 48010 9 Flavobacteriales 1 48001 order 200644 0 133 11 Ichthyobacteriaceae 1 1 family 55 1755828 2 0 1755829 1 0 genus 54 54 species 242600 0 1 Ichthyobacterium seriolicida 1853230 0 1 303 family 0 1 332102 genus 303 Fluviicola taffensis species 303 0 1 191579 39782 9 0 family 495 3 495 genus 0 9 34098 Blattabacterium 1 2647581 6 0 362 no rank 1186051 1 0 species 88 Blattabacterium sp. (Blaberus giganteus) Blattabacterium sp. (Mastotermes darwiniensis) 39768 1 0 species 54 species 36 1 0 367806 Blattabacterium sp. (Blatta orientalis) 624186 1 0 51 species Blattabacterium sp. (Blattella germanica) Blattabacterium sp. (Nauphoeta cinerea) 101 species 1316444 1 0 species 32 367488 0 1 Blattabacterium sp. (Periplaneta americana) 1653831 1 0 75 species Blattabacterium cuenoti 1 0 164514 species 55 Blattabacterium punctulatus 21 0 2762318 family 21106 1013 0 2 genus 201 1 1 Weeksella 200 species 1014 1 0 Weeksella virosa 1 Ornithobacterium 28250 0 2 genus 7124 23 7101 species 28251 0 1 Ornithobacterium rhinotracheale 0 1 34084 genus 1115 species 1115 34085 0 1 Riemerella anatipestifer Elizabethkingia 1 7 2629 genus 6 0 308865 Elizabethkingia miricola 172045 0 1 606 species species 319 1756149 0 1 Elizabethkingia genomosp. 3 238 0 1 species 343 Elizabethkingia meningoseptica 341 species 1756150 0 1 Elizabethkingia genomosp. 4 Elizabethkingia anophelis species 1013 0 1 1117645 2782232 10 0 no rank 10037 2782228 1 0 genus 1950 536441 1 0 species 1950 Chryseobacterium taklimakanense 8087 genus 59732 9 0 22 Chryseobacterium 1 253 1 0 species 827 Chryseobacterium indologenes 1174 no rank 3 0 2593645 Chryseobacterium sp. IHB B 17019 387 species 0 1 1721091 Chryseobacterium sp. StRB126 356 species 878220 0 1 1 0 2015076 species 431 Chryseobacterium sp. T16E-39 0 1 1324352 5032 species Chryseobacterium gallinarum 1265445 0 1 species 298 Chryseobacterium camelliae 0 1 1685010 species 419 Chryseobacterium glaciei 315 species 1 0 558152 Chryseobacterium piperi 0 1 1333713 266 family 1 0 267986 genus 266 Owenweeksia hongkongensis 253245 1 0 266 species Flavobacteriaceae 1 25674 family 96 0 49546 207 Dokdonia 1 genus 552 326319 0 4 12 Dokdonia donghaensis 1 0 326320 131 species 2615033 2 0 no rank 409 Dokdonia sp. 4H-3-7-5 983548 1 0 243 species Dokdonia sp. MED134 166 species 0 1 313590 0 4 363408 697 genus Nonlabens dokdonensis 185 species 328515 0 1 Nonlabens sediminis species 191 319236 1 0 no rank 321 2615035 2 0 Nonlabens sp. MIC269 170 species 1476901 0 1 species 151 2058134 1 0 Nonlabens sp. MB-3u-79 0 1 216431 266 genus species 266 313588 0 1 Croceibacter atlanticus genus 193 0 1 153265 Aequorivita sublithincola 101385 1 0 193 species 185 genus 1 0 83612 185 species 57029 0 1 Psychroflexus torquis genus 188 389486 0 1 no rank 188 2648869 1 0 188 species 0 1 1453352 Sediminicola sp. YIK13 269 genus 1 0 178469 species 269 616991 0 1 Arenibacter algicola 1223 genus 0 4 104267 255 species 0 1 669041 Tenacibaculum dicentrarchi Tenacibaculum todarodis 1850252 1 0 272 species Tenacibaculum maritimum 107401 1 0 species 327 584609 1 0 369 species Tenacibaculum jejuense 5 961 genus 4 0 104264 Cellulophaga 1 1 0 76594 401 species Cellulophaga baltica 359 species 0 1 59600 Cellulophaga algicola 196 species 979 0 1 Cellulophaga lytica genus 367 1 0 1209327 367 species 0 1 1803846 Flavivirga eckloniae 52959 6 0 genus 1307 7 1 Polaribacter Polaribacter reichenbachii 996801 0 1 310 species no rank 678 3 0 196858 Polaribacter sp. ALD11 1 0 2058137 310 species Polaribacter sp. MED152 1 0 313598 213 species Polaribacter sp. BM10 0 1 1529069 155 species Polaribacter vadi 312 species 0 1 1774273 202 genus 0 1 1518147 0 1 1790137 202 species Wenyingzhuangia fucanilytica 1 252356 5 0 1081 genus 1 Maribacter Maribacter cobaltidurans 272 species 1178778 1 0 2615042 3 0 no rank 808 1 0 1644130 216 species Maribacter sp. 1_2014MBL_MicDiv Maribacter sp. HTCC2170 0 1 313603 species 189 Maribacter sp. T28 1836467 1 0 species 403 1204360 1 0 genus 208 762954 0 1 species 208 Siansivirga zeaxanthinifaciens 1176327 0 1 genus 156 2636237 0 1 no rank 156 2094025 1 0 156 species Aureitalea sp. RR4-38 1 Capnocytophaga 0 15 1016 genus 4421 16 1017 0 1 334 species Capnocytophaga gingivalis Capnocytophaga ochracea species 231 1018 1 0 Capnocytophaga canimorsus 323 species 0 1 28188 Capnocytophaga stomatis 1848904 1 0 species 447 320 species 28189 0 1 Capnocytophaga cynodegmi 1821 no rank 2640652 6 0 Capnocytophaga sp. H4358 254 species 0 1 1945658 1945657 1 0 350 species Capnocytophaga sp. H2931 Capnocytophaga sp. ChDC OS43 species 296 0 1 209053 0 1 1705617 342 species Capnocytophaga sp. oral taxon 323 296 species 0 1 1316596 Capnocytophaga sp. oral taxon 878 Capnocytophaga sp. oral taxon 864 species 283 1316593 1 0 1 0 45243 species 200 Capnocytophaga haemolytica Capnocytophaga leadbetteri 327575 0 1 species 238 1019 1 0 491 species Capnocytophaga sputigena 327 genus 1 0 417127 Zunongwangia profunda 398743 0 1 species 327 2700084 0 1 373 genus Lutibacter sp. LPB0138 0 1 1850246 species 373 61432 2 0 no rank 422 species 286 0 1 1150389 Flavobacteriaceae bacterium UJ101 Flavobacteriaceae bacterium 3519-10 136 species 531844 1 0 Flavobacterium 1 5 3406 genus 237 0 9 Flavobacterium indicum 1 0 312277 247 species Flavobacterium gilvum 0 1 1492737 species 388 species 142 1763534 1 0 Flavobacterium crassostreae Flavobacterium branchiophilum 200 species 55197 0 1 531 species 996 0 1 Flavobacterium columnare Flavobacterium johnsoniae 1048 species 1 0 986 Flavobacterium commune 1306519 1 0 524 species Flavobacterium psychrophilum 1 0 96345 321 species 2 298 genus 112040 0 2 Zobellia 1 0 1 63186 296 species Zobellia galactanivorans 220 genus 393005 1 0 Tamlana sp. UJ94 1 0 2069432 220 species genus 337 286104 0 2 337 no rank 2615021 0 2 Winogradskyella sp. J14-2 species 169 0 1 1936080 Winogradskyella sp. PG-2 species 168 1 0 754409 Muricauda 1 1 362 genus 3 0 111500 1 0 516051 131 species Muricauda lutaonensis Muricauda ruestringensis 230 species 111501 0 1 336276 0 1 203 genus 203 no rank 0 1 2615019 Olleya sp. Bg11-27 2058135 1 0 203 species Myroides 1 genus 4142 5 0 76831 10 Myroides profundi 480520 1 0 species 268 536 no rank 2642485 2 0 Myroides sp. ZB35 1458492 0 1 species 272 species 264 1583100 0 1 Myroides sp. A21 Myroides odoratimimus species 3328 76832 1 0 genus 179 252306 1 0 Robiginitalea biformata species 179 252307 0 1 1 Lacinutrix 0 4 291183 619 genus 1 Lacinutrix venerupis species 186 1 0 1486034 432 no rank 2647285 0 2 Lacinutrix sp. 5H-3-7-4 983544 1 0 species 191 Lacinutrix sp. Bg11-31 241 species 2057808 1 0 1 0 358023 239 genus 0 1 1622118 species 239 Lutibacter profundi 2 genus 284 2 0 1649495 Seonamhaeicola 1 1 0 2622645 282 no rank species 282 1 0 1936081 Seonamhaeicola sp. S2-3 292 genus 1 0 143222 2633436 1 0 no rank 292 Salegentibacter sp. T436 1 0 1729720 292 species 202 genus 2 0 225842 0 2 2644710 202 no rank 142 species 1336794 0 1 Formosa sp. Hel1_33_131 60 species 0 1 1336795 Formosa sp. Hel3_A1_48 1 292691 5 0 936 genus 1 Gramella Gramella sp. LPB0144 1 0 1913577 species 141 411153 1 0 184 species Gramella forsetii 307 species 2126553 0 1 Gramella sp. SH35 Gramella flava species 303 0 1 1486245 0 1 261827 350 genus Algibacter alginicilyticus 0 1 1736674 species 350 313602 0 2 91 no rank 0 1 1940138 41 genus 41 species 1 0 1415657 Candidatus Walczuchella monophlebidarum 1 0 336809 genus 50 Candidatus Sulcia muelleri 1 0 336810 50 species 2222 phylum 0 20 1090 191410 0 20 2222 class 8 1 Chlorobia order 2214 191411 0 19 20 Chlorobiales 1 6 2194 family 0 18 191412 Chlorobiaceae 1 1062 no rank 8 0 274493 Pelodictyon 1 2 345 genus 1099 0 3 species 185 0 1 1100 Pelodictyon luteolum 158 species 34090 0 1 Pelodictyon phaeoclathratiforme Chlorobium 1 717 genus 1091 5 0 5 167 species 1092 1 0 Chlorobium limicola Chlorobium phaeobacteroides 1 0 1096 species 282 Chlorobium chlorochromatii 137 species 337090 1 0 126 species 0 1 1094 Chlorobium phaeovibrioides Chlorobaculum 1 3 526 genus 256319 4 0 Chlorobaculum parvum 0 1 274539 224 species Chlorobaculum tepidum 1097 0 1 species 123 Chlorobaculum limnaeum 176 species 274537 1 0 genus 428 0 4 1101 Prosthecochloris aestuarii species 125 1102 0 1 0 3 2632826 303 no rank Prosthecochloris sp. CIB 2401 65 species 1868325 1 0 species 122 1 0 1974213 Prosthecochloris sp. HL-130-GSB species 116 281093 1 0 Prosthecochloris sp. GSB1 genus 172 0 1 100715 100716 0 1 172 species Chloroherpeton thalassium 405 phylum 1134404 2 0 class 405 2 0 795747 795748 2 0 order 405 family 221 1 0 1334117 1 0 1134403 221 genus species 221 0 1 1134405 Melioribacter roseus family 184 0 1 795749 184 genus 795750 0 1 Ignavibacterium album 591197 0 1 184 species 65842 3 0 phylum 310 310 class 204430 0 3 1 218872 3 0 order 310 1 Fibrobacterales 204431 2 0 family 309 11 1 Fibrobacteraceae 832 1 0 298 genus 833 0 1 298 species Fibrobacter succinogenes