members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 33041 31 27550711 4695 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 name 0 1 68791 superkingdom 268 0 2157 Euryarchaeota 0 219 59994 phylum 1 28890 2 1274 class 1 11 0 Archaeoglobi 6 183980 2231 10 0 1268 order 1 2232 1268 family 1 10 0 Archaeoglobaceae genus 745 1 0 5 Archaeoglobus 1 2233 84156 110 species 1 0 Archaeoglobus profundus species 247 1 0 Archaeoglobus fulgidus 2234 0 Archaeoglobus sulfaticallidus 1 species 217 1316941 58290 0 1 Archaeoglobus veneficus 170 species 54260 genus 97 1 0 1 0 Ferroglobus placidus species 97 54261 1 190818 genus 425 1 0 3 Geoglobus 0 1 Geoglobus ahangari species 102 113653 Geoglobus acetivorans 0 1 322 species 565033 2283794 0 41 21391 clade 183925 2 25 0 Methanobacteria 1 class 11627 0 24 Methanobacteriales 1 11625 order 2158 5 2178 0 1 425 family genus 425 1 0 2179 2180 Methanothermus fervidus 0 1 species 425 2159 1 0 22 Methanobacteriaceae family 11195 1 0 Methanobrevibacter 7 genus 6771 1 2172 7 230361 species 1084 0 1 Methanobrevibacter millerae 2173 1 0 Methanobrevibacter smithii 1350 species 1 0 Methanobrevibacter olleyae species 1883 294671 0 Methanobrevibacter ruminantium 1 681 species 83816 2638681 1766 no rank 2 0 Methanobrevibacter sp. AbM4 0 1 species 769 224719 997 species 0 1 Methanobrevibacter sp. YE315 1609968 genus 3366 1 Methanobacterium 0 8 11 2160 2162 species 719 Methanobacterium formicicum 0 1 2627676 715 no rank 2 0 1379702 species 339 Methanobacterium sp. MB1 0 1 1911685 376 species 0 1 Methanobacterium sp. MZ-A1 766 species 1 0 Methanobacterium lacus 877455 species 387 Methanobacterium subterraneum 0 1 59277 0 Methanobacterium congolense 1 species 329 118062 868131 439 species 1 0 Methanobacterium paludis 2316 genus 792 0 1 792 species 0 1 Methanosphaera stadtmanae 2317 0 Methanothermobacter 5 1 265 genus 145260 1 2631116 no rank 40 1 0 species 40 1 0 Methanothermobacter sp. CaT2 866790 145262 0 1 Methanothermobacter thermautotrophicus 47 species 0 1 Methanothermobacter marburgensis species 104 145263 145261 0 1 Methanothermobacter wolfeii species 73 183939 0 16 class 9764 order 9764 1 0 Methanococcales 16 36 2182 family 3962 9 0 196117 0 Methanocaldococcus 7 3388 genus 1 196118 1 1301915 species 547 Methanocaldococcus bathoardescens 0 1 67760 1 0 Methanocaldococcus infernus species 200 736 species 0 1 Methanocaldococcus fervens 83171 73913 0 Methanocaldococcus vulcanius 1 385 species 2641196 1 0 no rank 884 884 species Methanocaldococcus sp. FS406-22 0 1 644281 0 1 Methanocaldococcus jannaschii species 635 2190 0 2 Methanotorris genus 574 1 196119 18 2189 556 species 1 0 Methanotorris igneus 5766 family 1 Methanococcaceae 0 6 2 2183 751 genus 1 0 155862 155863 0 1 Methanothermococcus okinawensis 751 species 4 0 genus 5013 2184 2187 0 Methanococcus vannielii 1 813 species 42879 0 Methanococcus aeolicus 1 456 species 39152 3118 species Methanococcus maripaludis 0 1 1 0 Methanococcus voltae 626 species 2188 clade 27985 0 108 2290931 0 Halobacteria 61 1 12404 class 183963 76 1644055 94 0 17 Haloferacales 1 3418 order 1963271 11 0 7 Halorubraceae 1 family 1266 3 0 Halorubrum genus 485 1 56688 16 29284 0 1 Halorubrum trapanicum species 222 2247 Halorubrum lacusprofundi 0 1 species 247 1 0 genus 491 1644057 755307 491 species 0 1 Salinigranum rubrum 1209988 40 0 2 Halopenitus genus 279 1 Halopenitus persicus 0 1 species 239 1048396 0 1 no rank 258 2678336 0 halophilic archaeon DL31 1 258 species 756883 1 1800 family 0 8 Haloferacaceae 11 1644056 2251 21 4 0 Haloferax 1 genus 1286 309 species 1 0 Haloferax mediterranei 2252 species 493 0 1 Haloferax volcanii 2246 35746 463 species Haloferax gibbonsii 0 1 60846 0 1 genus 223 0 Halogeometricum borinquense 1 223 species 60847 3 293431 1 genus 280 2 0 Haloquadratum 293091 0 Haloquadratum walsbyi 1 species 277 0 Halobacteriales 28 4807 order 1 2235 55 0 Haloarculaceae 16 1 3177 family 1963268 30 genus 563 1 Halorhabdus 0 3 2 146825 0 Halorhabdus utahensis 1 396 species 146826 1 0 Halorhabdus tiamatea 165 species 430914 0 2 Halorientalis 391 genus 1 1073987 5 386 no rank 0 1 2648975 1932360 0 Halorientalis sp. IM1011 1 species 386 203135 11 2 0 Halomicrobium genus 246 1 235 species 1 0 Halomicrobium mukohataei 57705 5 0 Haloarcula 1 1372 genus 2237 13 351 species 1 0 Haloarcula marismortui 2238 species 255 0 Haloarcula taiwanensis 1 1932004 2624677 no rank 350 0 1 1592728 1 0 Haloarcula sp. CBA1115 species 350 0 Haloarcula hispanica 1 species 403 51589 0 Natronomonas 3 575 genus 1 63743 9 2257 0 1 Natronomonas pharaonis species 378 416273 0 1 Natronomonas moolapensis 188 species 2236 3 11 0 Halobacteriaceae 1 1575 family 0 Halodesulfurarchaeum 2 genus 144 1 1980514 1 1873524 species 143 0 1 Halodesulfurarchaeum formicicum 1 1656823 180 genus 1 0 2 Halanaeroarchaeum 1604004 179 species 0 1 Halanaeroarchaeum sulfurireducens 8 332246 1 genus 236 0 2 Halalkalicoccus species 228 0 Halalkalicoccus jeotgali 1 413810 15 2239 1 genus 1012 0 Halobacterium 4 2242 0 Halobacterium salinarum 1 species 301 342 no rank 1 0 2668073 0 1 Halobacterium sp. DL1 342 species 751944 1407499 354 species 0 1 Halobacterium hubeiense 43 1644060 1 4103 order 15 0 Natrialbales 14 0 Natrialbaceae family 4060 1 1644061 55 353799 1 0 genus 254 0 Halostagnicola larsenii 1 254 species 353800 376 genus 1 0 29287 29288 376 species 0 1 Natronococcus occultus 387342 1 0 genus 479 479 species 1 0 Halopiger xanaduensis 387343 203193 517 genus 0 1 229731 517 species 1 0 Halobiforma lacisalsi 0 3 Haloterrigena genus 678 1 121871 4 62320 1 0 Haloterrigena turkmenica 476 species 588898 Haloterrigena daqingensis 0 1 198 species 0 1 322 genus 63742 13769 0 1 Natrialba magadii species 322 1 0 362 genus 1269201 1 0 no rank 362 2621923 1333523 0 Salinarchaeum sp. Harcht-Bsk1 1 species 362 9 88723 818 genus 1 0 Natrinema 3 2622230 no rank 396 1 0 species 396 0 Natrinema sp. J7-2 1 406552 1 0 Natrinema pellirubrum 413 species 69525 1 0 199 genus 2256 species 199 Natronobacterium gregoryi 0 1 44930 Methanomicrobia 0 47 class 15581 1 224756 11 1 order 706 5 0 Methanocellales 32 570264 1 570265 674 family 1 0 Methanocellaceae 4 3 570266 1 genus 673 Methanocella 0 3 1175445 441 species Methanocella arvoryzae 0 1 1175444 229 species 0 1 Methanocella conradii 1 order 11600 0 Methanosarcinales 27 36 94695 4 143067 1 family 640 Methanosaetaceae 0 3 0 2 genus 636 2222 2223 Methanothrix soehngenii 0 1 309 species 301375 327 species 1 0 Methanosaeta harundinacea 23 0 Methanosarcinaceae 10924 family 1 2206 4 56 2207 genus 7746 1 0 Methanosarcina 13 0 1 Methanosarcina horonobensis species 746 418008 2208 species 1946 Methanosarcina barkeri 0 1 2209 959 species 0 1 Methanosarcina mazei 1 0 Methanosarcina acetivorans species 520 2214 387 species Methanosarcina lacustris 0 1 170861 species 472 0 Methanosarcina siciliae 1 38027 2215 318 species 0 Methanosarcina vacuolata 1 664 species 1 0 Methanosarcina thermophila 2210 1678 no rank 4 0 2644672 1434103 0 1 Methanosarcina sp. WWM596 species 437 0 Methanosarcina sp. Kolksee 1 species 339 1434099 Methanosarcina sp. MTP4 0 1 473 species 1434100 1434102 Methanosarcina sp. WH1 0 1 429 species 2175 823 genus 2 0 350 species 1 0 Methanohalophilus mahii 2176 Methanohalophilus halophilus 0 1 species 473 2177 2220 0 1 genus 452 species 452 0 1 Methanolobus psychrophilus 420950 0 Methanosalsum 2 genus 461 1 196136 2 39669 459 species 0 1 Methanosalsum zhilinae 101191 291 genus 1 0 101192 Methanomethylovorans hollandica 0 1 species 291 2225 568 genus 2 0 Methanococcoides methylutens 0 1 206 species 2226 species 362 Methanococcoides burtonii 0 1 29291 2321 0 1 579 genus 2322 0 1 Methanohalobium evestigatum species 579 16 2191 1 order 3264 0 14 Methanomicrobiales Methanomicrobiaceae 0 6 1545 family 1 2194 3 genus 1299 1 0 Methanoculleus 4 14 45989 no rank 553 0 1 2619537 86622 553 species Methanoculleus sp. MAB1 0 1 species 300 0 Methanoculleus marisnigri 1 2198 83986 0 Methanoculleus bourgensis 1 species 432 230355 genus 243 0 1 54120 Methanolacinia petrolearia 0 1 species 243 4 0 Methanoregulaceae 1 897 family 1198451 4 475087 genus 343 0 1 475088 0 1 Methanosphaerula palustris 343 species 395331 0 2 genus 550 207 species 1 0 Methanoregula boonei 358766 species 343 0 1 Methanoregula formicica 882104 342 family 0 2 196137 2202 1 0 Methanospirillum 2 1 genus 342 2203 Methanospirillum hungatei 0 1 species 341 88404 1 0 464 family 2192 464 genus 1 0 0 1 Methanocorpusculum labreanum 464 species 83984 2283796 3841 clade 18 0 33 183967 1 3467 class 0 Thermoplasmata 16 1149 order 1 0 Methanomassiliicoccales 6 7 1235850 2517203 254 family 2 0 1291539 27 0 Candidatus Methanomethylophilus 2 genus 254 1 1291540 species 227 Candidatus Methanomethylophilus alvus 0 1 family 888 1 0 Methanomassiliicoccaceae 3 1 1577788 322 genus 0 1 1607807 1577791 0 Candidatus Methanoplasma termitum 1 322 species 1080709 genus 565 0 1 1406512 565 species 1 0 Candidatus Methanomassiliicoccus intestinalis 8 0 Thermoplasmatales 1 1543 order 2301 2 no rank 433 0 1 1919231 1054217 433 species 1 0 Thermoplasmatales archaeon BRNA1 0 2 family 322 90142 74968 322 genus 2 0 0 Ferroplasma acidarmanus 1 188 species 97393 0 1 Ferroplasma acidiphilum species 134 74969 46630 0 1 family 430 46631 1 0 430 genus 0 1 Picrophilus torridus 430 species 82076 0 1 141 family 1747776 genus 141 1 0 1747777 1 0 Cuniculiplasma divulgatum 141 species 1673428 46659 2 0 family 215 215 genus 2 0 2302 130 species 0 Thermoplasma volcanium 1 50339 1 0 Thermoplasma acidophilum 85 species 2303 1234666 742 no rank 1 0 1495144 742 species 0 1 methanogenic archaeon ISO4-H5 374 clade 2 0 1803510 379546 0 2 genus 374 no rank 96 0 1 2633939 1 0 Aciduliprofundum sp. MAR08-339 96 species 673860 278 species 0 Aciduliprofundum boonei 1 379547 40 0 Thermococci class 5501 1 183968 3 39 0 Thermococcales 5498 order 1 2258 10 5488 family 1 38 0 Thermococcaceae 28 2259 19 2263 1 genus 4101 0 Thermococcus 29 1 0 Thermococcus chitonophagus species 104 54262 Thermococcus paralvinellae 0 1 species 156 582419 1505907 135 species 0 1 Thermococcus eurythermalis 71997 0 Thermococcus gorgonarius 1 species 258 277988 78 species 0 1 Thermococcus thioreducens 49899 0 1 Thermococcus profundus 120 species Thermococcus peptonophilus 0 1 142 species 53952 0 1 Thermococcus barophilus species 371 55802 187878 0 Thermococcus gammatolerans 1 136 species 195522 199 species 0 1 Thermococcus nautili 0 1 Thermococcus radiotolerans 237 species 187880 species 67 0 1 Thermococcus piezophilus 1712654 110164 0 Thermococcus guaymasensis 1 species 41 0 Thermococcus siculi 1 species 151 72803 163003 Thermococcus cleftensis 0 1 112 species 2265 0 Thermococcus litoralis 1 175 species 0 6 no rank 664 2627626 1042877 1 0 Thermococcus sp. 4557 125 species 2016361 111 species 0 1 Thermococcus sp. EXT12c 1674923 0 1 Thermococcus sp. 2319x1 species 97 2008440 0 1 Thermococcus sp. 5-4 species 104 Thermococcus sp. AM4 0 1 158 species 246969 122420 species 69 1 0 Thermococcus sp. P6 0 Thermococcus barossii 1 177 species 54077 71998 0 1 Thermococcus pacificus 235 species 342948 0 1 Thermococcus onnurineus species 121 2264 species 120 0 Thermococcus celer 1 172049 Thermococcus sibiricus 0 1 131 species 311400 152 species 0 1 Thermococcus kodakarensis genus 1235 7 0 2260 2629106 0 2 no rank 456 1183377 0 1 Pyrococcus sp. ST04 410 species Pyrococcus sp. NA2 0 1 species 46 342949 53953 species 470 0 1 Pyrococcus horikoshii 2261 0 1 Pyrococcus furiosus species 146 1008460 species 68 Pyrococcus yayanosii 0 1 1 0 Pyrococcus abyssi species 52 29292 Pyrococcus kukulkanii 0 1 43 species 1609559 genus 124 1 0 83867 species 124 1 0 Palaeococcus pacificus 971279 48 0 8714 clade 1783275 51967 0 1 phylum 72 498845 genus 72 0 1 Candidatus Korarchaeum cryptofilum 0 1 72 species 498846 5480 phylum 37 0 28889 37 0 Thermoprotei 5480 class 1 183924 110 5 2281 1 order 3204 0 Sulfolobales 9 8 0 family 3199 118883 genus 346 0 1 2100760 2287 Sulfolobus solfataricus 0 1 species 346 genus 99 2 0 41980 40 species 1 0 Metallosphaera sedula 43687 1006005 1 0 Metallosphaera cuprina 59 species 610 genus 1 0 69655 111955 610 species 1 0 Sulfolobus tokodaii 1 0 genus 480 12914 563177 1 0 Acidianus hospitalis 480 species genus 1664 3 0 2284 2285 1 0 Sulfolobus acidocaldarius species 134 1 0 no rank 1176 2641160 1891280 1176 species Sulfolobus sp. A20 0 1 0 Sulfolobus islandicus 1 species 354 43080 0 13 Desulfurococcales order 804 1 114380 1 2307 214 family 0 4 1 77 genus Hyperthermus 0 2 2 54247 54248 1 0 Hyperthermus butylicus 75 species 0 1 genus 57 2308 species 57 1 0 Pyrodictium delaneyi 1273541 genus 80 1 0 54251 species 80 0 1 Pyrolobus fumarii 54252 2272 8 0 589 family 2279 369 genus 0 2 2280 species 208 1 0 Staphylothermus marinus 84599 1 0 Staphylothermus hellenicus species 161 81 genus 0 2 2273 2275 1 0 Desulfurococcus mucosus species 26 94694 species 55 1 0 Desulfurococcus amylolyticus 477695 0 1 genus 7 7 species 0 1 Thermogladius calderae 1200300 41 genus 1 0 54253 54254 41 species 0 1 Thermosphaera aggregans 54258 genus 91 0 2 160233 species 59 Ignicoccus hospitalis 0 1 54259 0 1 Ignicoccus islandicus species 32 330 order 2 0 871006 255472 family 302 1 0 200414 302 genus 1 0 species 302 Caldisphaera lagunensis 0 1 200415 0 1 28 family 871007 0 1 genus 28 105850 28 species 0 1 Acidilobus saccharovorans 242703 1 1032 order 0 12 Thermoproteales 2 2266 4 2267 1 522 family Thermoproteaceae 0 7 237 genus 1 0 2276 0 1 Pyrobaculum islandicum 237 species 2277 164450 2 0 78 genus 164451 species 36 0 1 Vulcanisaeta distributa 985052 42 species 0 Vulcanisaeta moutnovskia 1 2270 0 2 123 genus 2271 54 species Thermoproteus tenax 0 1 184117 species 69 0 Thermoproteus uzoniensis 1 76886 80 genus 0 1 80 species 1 0 Caldivirga maquilingensis 76887 114378 4 0 508 family genus 508 0 4 2268 1 0 Thermofilum adornatus 218 species 1365176 1550241 0 1 Thermofilum uzonense species 62 148 species Thermofilum carboxyditrophus 0 1 1483572 2269 Thermofilum pendens 0 1 species 80 651137 10 0 phylum 3162 31932 3 0 order 2061 3 0 family 2061 338190 genus 1465 2 0 338191 species 521 0 Candidatus Nitrosopumilus sediminis 1 1229909 1580092 944 species 0 Candidatus Nitrosopumilus adriaticus 1 0 1 genus 596 1993653 1898749 species 596 0 1 Candidatus Nitrosomarinus catalina 0 4 class 411 1643678 order 190 0 3 1033996 7 1033997 1 family 190 0 3 Nitrososphaeraceae 1 497726 1 183 genus 0 2 Nitrososphaera 1034015 species 182 0 Nitrososphaera viennensis 1 1968909 0 1 order 221 0 1 221 family 1968910 498374 221 genus 0 1 0 Candidatus Nitrosocaldus islandicus 1 221 species 2045011 3 0 no rank 690 651142 genus 545 1 0 1593364 1410606 0 Candidatus Nitrosopelagicus brevis 1 species 545 145 genus 0 2 1825023 1846278 47 species Candidatus Nitrosotenuis sp. AQ6f 0 1 1603555 species 98 Candidatus Nitrosotenuis cloacae 0 1 0 1 clade 83 1783276 1 0 phylum 83 1801631 2490204 0 1 83 genus 1920749 species 83 0 Candidatus Micrarchaeota archaeon Mia14 1 0 Bacteria 4395 superkingdom 27448879 1 2 135 0 2000 Proteobacteria phylum 1837462 1 1224 875 1 890190 class 876 0 Gammaproteobacteria 1838 1236 0 Aeromonadales 29 1 34902 order 135624 167 28 0 Aeromonadaceae 1 34735 family 84642 268 Tolumonas 0 2 1130 genus 1 43947 18 43948 0 Tolumonas auensis 1 1112 species 129577 21 2 0 Oceanimonas genus 1827 1 1806 no rank 0 1 2636315 511062 0 1 Oceanimonas sp. GK1 1806 species 1878 642 1 genus 28880 Aeromonas 0 18 648 species 851 1 0 Aeromonas caviae species 6244 0 1 Aeromonas hydrophila 644 196024 species 1079 Aeromonas dhakensis 0 1 1292 species 1 0 Aeromonas schubertii 652 1 0 Aeromonas media 1337 species 651 654 0 1 Aeromonas veronii 2714 species 257493 8 0 no rank 8936 985 species 0 1 Aeromonas sp. ASNIH1 1636606 1758179 1 0 Aeromonas sp. ASNIH5 1192 species 1920107 904 species 1 0 Aeromonas sp. ASNIH7 1636608 0 1 Aeromonas sp. ASNIH3 species 888 species 1291 1 0 Aeromonas sp. CU5 2033033 species 929 0 Aeromonas sp. ASNIH2 1 1636607 species 1551 Aeromonas sp. ASNIH4 0 1 1636609 2033032 1196 species 1 0 Aeromonas sp. CA23 0 1 Aeromonas salmonicida 2339 species 645 Aeromonas rivipollensis 0 1 species 1226 948519 984 species 0 1 Aeromonas aquatica 558964 1 genus 782 0 3 Oceanisphaera 1 225143 Oceanisphaera profunda 0 1 species 321 1416627 460 species 0 1 Oceanisphaera sp. AMac2203 1903694 2 0 Zobellella genus 1848 1 347533 15 1 0 Zobellella denitrificans species 1833 347534 0 Vibrionales 44 order 48714 1 135623 34 641 194 0 43 Vibrionaceae 48680 family 1 511678 17 Aliivibrio 0 4 5692 genus 1 species 2173 0 Aliivibrio wodanis 1 80852 668 0 1 Aliivibrio fischeri 1596 species 40269 1 0 Aliivibrio salmonicida 1906 species 1 genus 716 Grimontia 0 2 3 246861 Grimontia hollisae 0 1 713 species 673 657 9 0 Photobacterium 4 1 genus 4699 0 Photobacterium damselae 1 species 1519 38293 species 1163 Photobacterium gaetbulicola 0 1 1295392 74109 species 2008 1 0 Photobacterium profundum 0 2 Paraphotobacterium 1 genus 1226 2042066 2 1755811 1224 species 0 Paraphotobacterium marinum 1 662 601 0 30 Vibrio 1 genus 36153 1137 species 1 0 Vibrio mimicus 674 1 0 species group 677 1891919 0 Vibrio tubiashii 1 677 species 29498 2614977 0 2 no rank 1677 1 0 Vibrio sp. 2521-89 species 604 2014742 species 1073 Vibrio sp. EJY3 0 1 1116375 species 2660 0 1 Vibrio vulnificus 672 0 1 Vibrio qinghaiensis 889 species 2025808 29494 1 0 Vibrio furnissii species 660 species 1563 Vibrio scophthalmi 0 1 45658 717610 13899 species group 0 10 2374 species 0 Vibrio alginolyticus 1 663 2315253 1536 species subgroup 0 2 50719 species 924 0 Vibrio diabolicus 1 Vibrio antiquarius 0 1 species 612 150340 species 674 0 Vibrio rotiferianus 1 190895 1 0 Vibrio campbellii 2695 species 680 0 1 Vibrio natriegens species 1913 691 0 1 Vibrio jasicida 539 species 766224 670 1809 species 0 Vibrio parahaemolyticus 1 0 1 Vibrio harveyi species 1177 669 1182 species 1 0 Vibrio owensii 696485 1 0 Vibrio coralliilyticus 1748 species 190893 28173 628 species 0 Vibrio nigripulchritudo 1 species 805 0 Vibrio tritonius 1 1435069 Vibrio tapetis 0 1 800 species 52443 1352 species 1 0 Vibrio fluvialis 676 species 1453 0 Vibrio cholerae 1 666 55601 2447 species 1 0 Vibrio anguillarum 212663 species 801 1 0 Vibrio tasmaniensis species 775 1 0 Vibrio breoganii 553239 687 species 587 0 1 Vibrio gazogenes 1534743 0 Vibrio hyugaensis 1 species 994 order 11120 1 26 0 Cellvibrionales 75 1706369 6 0 Spongiibacteraceae 1355 family 1 1706375 43 2 1084558 659 genus 1 Oceanicoccus 0 2 716816 0 Oceanicoccus sagamiensis 1 species 657 genus 401 0 1 1434050 1470434 1 0 Zhongshania aliphaticivorans species 401 1 630749 genus 252 1 2 0 Spongiibacter 2631504 0 1 no rank 251 1620392 0 1 Spongiibacter sp. IMCC21906 251 species 1706371 16 Cellvibrionaceae 0 10 1 5919 family 0 2 Saccharophagus 1 608 genus 316625 1 0 1 Saccharophagus degradans species 607 86304 genus 877 0 1 447467 877 species Simiduia agarivorans 0 1 447471 2036021 genus 1527 0 1 1737490 0 1 Agarilytica rhodophyticola 1527 species 2425 genus 626 0 1 2426 species 626 Teredinibacter turnerae 0 1 39 10 genus 2265 1 0 Cellvibrio 4 2 0 1265 no rank 2624793 1945512 Cellvibrio sp. PSBB023 0 1 406 species 0 Cellvibrio sp. PSBB006 1 species 859 1987723 155077 species 961 Cellvibrio japonicus 0 1 family 2330 1 0 5 Microbulbiferaceae 18 1706373 48073 13 0 Microbulbifer 4 genus 2312 1 1769779 species 851 0 1 Microbulbifer aggregans 252514 species 692 Microbulbifer thermotolerans 0 1 756 species 0 Microbulbifer agarilyticus 1 260552 family 1441 1 0 Halieaceae 4 11 1706372 6 1217416 1430 genus 1 0 3 Halioglobus 930805 702 species 0 1 Halioglobus japonicus 930806 species 722 0 Halioglobus pacificus 1 357 order 0 2 135615 868 357 family 2 0 7 869 1 genus 357 0 2 Dichelobacter Dichelobacter nodosus 0 1 species 350 870 1934945 49 4 0 Immundisolibacterales 1 order 1390 56 1934946 1 family 1341 3 0 Immundisolibacteraceae 18 1934947 1 genus 1285 0 Immundisolibacter 2 0 1 Immundisolibacter cernigliae 1267 species 1810504 order 5317 1 Methylococcales 0 12 64 135618 56 403 family 5253 1 11 0 Methylococcaceae 1 genus 572 2 0 Methylovulum 3 762296 0 Methylovulum psychrotolerans 1 species 569 1704499 Methylomonas 0 5 1 genus 2904 416 53 421 0 Methylomonas methanica 1 533 species 0 Methylomonas denitrificans 1 637 species 1538553 2608980 907 no rank 0 1 1727196 0 Methylomonas sp. DH-1 1 species 907 1 0 Methylomonas koyamae 774 species 702114 16 413 1 910 genus 0 Methylococcus 2 414 Methylococcus capsulatus 0 1 894 species 811 genus 1 0 39773 0 1 Methylomicrobium alcaliphilum species 811 271065 0 Enterobacterales 245 1 order 318091 91347 1206 543 1546 0 Enterobacteriaceae 118 1 family 185993 56 160674 genus 4071 1 3 0 Raoultella 575 0 1 Raoultella planticola 1195 species 54291 0 Raoultella ornithinolytica 1 2820 species 0 Shigella 4 genus 8596 1 620 497 species 2813 0 Shigella dysenteriae 1 622 0 1 Shigella flexneri 1933 species 623 2629414 3353 no rank 0 1 1 0 Shigella sp. PAMC 28760 species 3353 1813821 83654 111 0 4 Leclercia genus 3700 1 83655 species 1059 Leclercia adecarboxylata 0 1 2627398 2530 no rank 0 2 1200 species 0 Leclercia sp. LSNIH3 1 1920116 0 Leclercia sp. LSNIH1 1 1330 species 1920114 858 genus 0 1 579 61648 1 0 Kluyvera intermedia species 858 1330545 45 4 0 Lelliottia genus 3399 1 899 species 0 1 Lelliottia jeotgali 1907578 61646 0 1 Lelliottia amnigena 1467 species 69220 species 988 1 0 Lelliottia nimipressuralis 1 genus 3961 5 0 Kosakonia 34 1330547 497725 Kosakonia oryzae 0 1 678 species 1 0 Kosakonia sacchari species 897 1158459 species 1305 1 0 Kosakonia cowanii 208223 0 1 Kosakonia radicincitans 1047 species 283686 191675 19 0 no rank 7179 84563 clade 7179 19 0 84564 7 0 clade 2379 1 genus 2379 7 0 Candidatus Blochmannia 2 203804 2 0 942 no rank 711328 313 species 1 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 1505597 629 species 0 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 251542 species 158 0 Candidatus Blochmannia chromaiodes 1 1 0 Candidatus Blochmannia floridanus 500 species 203907 251535 1 0 Candidatus Blochmannia vafer 532 species 245 species Candidatus Blochmannia pennsylvanicus 0 1 101534 1 0 clade 520 199891 520 species 0 1 secondary endosymbiont of Trabutina mannipara 1835721 0 2 Candidatus Doolittlea genus 646 1 1906657 4 Candidatus Doolittlea endobia 0 1 642 species 1778262 1682492 1 0 764 genus 1 0 Candidatus Tachikawaea gelatinosa species 764 1410383 146507 3 0 1213 clade 107 species 1 0 secondary endosymbiont of Heteropsylla cubana 134287 1 0 secondary endosymbiont of Ctenarytaina eucalypti species 393 1199245 568987 genus 713 0 1 138072 1 0 Candidatus Hamiltonella defensa 713 species genus 151 0 1 1906659 151 species Candidatus Hoaglandella endobia 0 1 1778263 1 1906660 1 573 genus 0 2 Candidatus Mikella 1778264 572 species Candidatus Mikella endobia 0 1 1906661 1 Candidatus Gullanella 0 2 933 genus 1 1070130 1 0 Candidatus Gullanella endobia 932 species 2 0 Shimwellia 1 genus 1115 1335483 6 species 1109 0 Shimwellia blattae 1 563 1 genus 42051 0 5 Escherichia 423 561 35207 species 0 Escherichia coli 1 562 208962 species 3483 1 0 Escherichia albertii 1499973 1017 species 0 Escherichia marmotae 1 564 species 1921 0 1 Escherichia fergusonii 590 520 Salmonella 0 3 genus 11088 1 54736 1167 species 0 1 Salmonella bongori 1 0 Salmonella enterica species 9401 28901 544 1114 0 Citrobacter 14 1 genus 20508 0 Citrobacter koseri 1 1674 species 545 species 909 0 Citrobacter farmeri 1 67824 1344959 11410 species group 0 7 67827 species 1278 0 Citrobacter werkmanii 1 1385 species 0 1 Citrobacter freundii complex sp. CFNIH3 2077147 546 4412 species Citrobacter freundii 0 1 1518 species Citrobacter braakii 0 1 57706 species 1106 Citrobacter freundii complex sp. CFNIH4 0 1 2077148 2066049 species 987 0 1 Citrobacter freundii complex sp. CFNIH2 724 species 0 1 Citrobacter freundii complex sp. CFNIH9 2077149 0 2 1906 no rank 2644389 1920110 species 1057 1 0 Citrobacter sp. CFNIH10 1702170 0 1 Citrobacter sp. FDAARGOS_156 849 species 67825 species 908 0 Citrobacter rodentium 1 35703 1 0 Citrobacter amalonaticus 2587 species 0 8 Cronobacter 1 genus 7113 413496 154 413503 1 0 Cronobacter malonaticus species 683 535744 770 species 0 Cronobacter universalis 1 413497 species 923 1 0 Cronobacter dublinensis 1169 species 0 Cronobacter muytjensii 1 413501 794 species 0 1 Cronobacter condimenti 1163710 413502 Cronobacter turicensis 0 1 species 754 28141 0 Cronobacter sakazakii 1 1866 species 1 0 222 genus 401618 species 222 1 0 Candidatus Riesia pediculicola 401619 genus 581 1 0 409304 168169 0 1 Candidatus Ishikawaella capsulata species 581 36866 no rank 5240 0 5 0 Enterobacteriaceae bacterium ENNIH2 1 species 984 1920109 693444 0 Enterobacteriaceae bacterium strain FGI 57 1 992 species 2066051 Enterobacteriaceae bacterium ENNIH1 0 1 905 species 1920128 1 0 Enterobacteriaceae bacterium ENNIH3 1197 species 0 1 Plautia stali symbiont species 1162 891974 1 0 genus 57 1048757 57 species 0 1 Candidatus Moranella endobia 1048758 1330546 9 0 3 Pluralibacter 1 genus 3608 species 1253 0 [Enterobacter] lignolyticus 1 1334193 61647 Pluralibacter gergoviae 0 1 2346 species 570 1034 0 10 Klebsiella 1 29827 genus 573 0 1 Klebsiella pneumoniae 9464 species 2026240 species 1283 1 0 Klebsiella quasivariicola 2 0 no rank 3138 2608929 1905288 1293 species 1 0 Klebsiella sp. LTGPAF-6F 1 0 Klebsiella sp. M5al species 1845 1934254 species 2422 0 1 Klebsiella aerogenes 548 571 species 5275 Klebsiella oxytoca 0 1 244366 2888 species 1 0 Klebsiella variicola 1463165 1 0 Klebsiella quasipneumoniae 1663 species 1134687 species 2660 1 0 Klebsiella michiganensis 1 genus 3285 2 0 Cedecea 6 158483 1 0 Cedecea neteri 3279 species 158822 Enterobacter 0 22 1 genus 27988 547 1981 354276 12 0 19510 species group 1812935 0 1 Enterobacter cloacae complex 'Hoffmann cluster IV' species 500 species 628 0 1 Enterobacter kobei 208224 299767 0 Enterobacter ludwigii 1 627 species 158836 2517 Enterobacter hormaechei 0 3 1 species 3912 773 subspecies 0 Enterobacter cloacae complex 'Hoffmann cluster III' 1 1812934 0 Enterobacter xiangfangensis 1 622 subspecies 1296536 species 847 1 0 Enterobacter cancerogenus 69218 2855 species 0 1 Enterobacter asburiae 61645 2404 no rank 0 3 2757714 2027919 species 758 Enterobacter cloacae complex bacterium 0 1 2077137 species 587 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 1915310 species 1059 1 0 Enterobacter cloacae complex sp. ECNIH7 550 7737 species 0 Enterobacter cloacae 1 2608935 6497 no rank 9 0 399742 Enterobacter sp. 638 0 1 820 species 1977566 0 Enterobacter sp. Crenshaw 1 species 409 1 0 Enterobacter sp. ODB01 629 species 1827481 0 1 Enterobacter sp. CRENT-193 754 species 2051905 species 391 0 1 Enterobacter sp. E20 1560339 Enterobacter sp. R4-368 0 1 1020 species 1166130 species 1057 1 0 Enterobacter sp. SA187 1914861 species 889 0 Enterobacter sp. FY-07 1 1692238 0 Enterobacter sp. HK169 1 species 528 1868135 46190 family 1 Yersiniaceae 0 39 128 1903411 1 14089 genus 0 Yersinia 13 371 629 28152 951 species 0 Yersinia kristensenii 1 29484 species 2482 Yersinia frederiksenii 0 1 1 0 743 no rank 2653513 1839800 743 species 0 1 Yersinia sp. FDAARGOS_228 29483 1126 species 0 1 Yersinia aldovae 485 species 1 0 Yersinia aleksiciae 263819 1649845 species group 2460 0 3 Yersinia pestis 0 1 718 species 632 633 species 1171 Yersinia pseudotuberculosis 0 1 571 species 1 0 Yersinia similis 367190 species 881 0 1 Yersinia intermedia 631 Yersinia enterocolitica 0 1 species 2684 630 29486 0 Yersinia ruckeri 1 species 1265 29485 641 species 0 Yersinia rohdei 1 34037 104 4 0 Rahnella 1 3346 genus 1098 species 0 1 Rahnella aquatilis 34038 no rank 2144 2 0 2635087 741091 0 Rahnella sp. Y9602 1 species 1143 species 1001 Rouxiella sp. ERMR1:05 0 1 1805933 Gibbsiella 0 2 1869 genus 1 929812 12 Gibbsiella quercinecans 0 1 species 1857 929813 613 1218 0 16 Serratia 1 25788 genus 1 0 Serratia liquefaciens species 1196 614 82996 0 1 Serratia plymuthica species 1767 species 2472 0 1 Serratia fonticola 47917 615 1 0 Serratia marcescens species 6043 28151 1031 species 0 Serratia proteamaculans 1 species 1369 0 Serratia rubidaea 1 61652 species 1780 0 Serratia ficaria 1 61651 2647522 0 8 no rank 8912 1758196 species 1186 0 Serratia sp. SSNIH1 1 104623 0 Serratia sp. ATCC 39006 1 species 1452 0 Serratia sp. FGI94 1 1135 species 671990 488142 1383 species 0 1 Serratia sp. SCBI species 1179 0 Serratia sp. FS14 1 1327989 768490 0 1 Serratia sp. AS12 679 species 2033438 Serratia sp. MYb239 0 1 species 1219 768493 1 0 Serratia sp. AS13 679 species 0 Rouxiella 1 17 genus 1565532 0 Chania 2 genus 953 1 1745211 41 1639108 species 912 1 0 Chania multitudinisentens 38 1903412 11344 family 1 0 Hafniaceae 14 620 635 1 genus 7243 0 Edwardsiella 8 species 984 Edwardsiella piscicida 0 1 1263550 1 0 Edwardsiella ictaluri 736 species 67780 716 species 0 Edwardsiella anguillarum 1 1821960 93378 species 779 1 0 Edwardsiella hoshinae 1695 no rank 0 2 2676541 0 Edwardsiella sp. LADL05-105 1 species 756 1650654 species 939 0 1 Edwardsiella sp. EA181011 1578828 636 1 0 Edwardsiella tarda 1713 species 1 3219 genus 0 Hafnia 3 57 568 no rank 764 0 1 2621980 1848580 species 764 1 0 Hafnia sp. CBA7124 569 Hafnia alvei 0 1 2398 species 844 genus 1 2 0 Obesumbacterium 127 82982 1 0 Obesumbacterium proteus 717 species 82983 451511 1606 no rank 2 0 0 Plesiomonas 2 1606 genus 1 702 22 1584 species 0 1 Plesiomonas shigelloides 703 Morganellaceae 0 21 21991 family 1 1903414 19 0 Providencia 4 1 6182 genus 586 48 126385 0 Providencia alcalifaciens 1 1172 species 588 Providencia stuartii 0 1 species 2436 species 2526 1 0 Providencia rettgeri 587 29487 76 4 0 Photorhabdus genus 3555 1 574560 0 Photorhabdus temperata 1 species 896 29488 1206 species Photorhabdus luminescens 0 1 0 1 Photorhabdus asymbiotica species 1377 291112 Xenorhabdus 0 6 genus 4848 1 626 34 628 1 0 Xenorhabdus nematophila 1710 species Xenorhabdus bovienii 0 1 species 879 40576 40577 0 Xenorhabdus poinarii 1 745 species 351679 0 1 Xenorhabdus hominickii species 924 Xenorhabdus doucetiae 0 1 species 556 351671 637 1 0 genus 654 634113 1 0 Arsenophonus symbiont of Lipoptena fortisetosa 654 species 1 2152 genus 2 0 Morganella 64 581 2088 species 0 Morganella morganii 1 582 3 0 Proteus 1 genus 4581 583 134 Proteus vulgaris 0 1 species 1818 585 584 1 0 Proteus mirabilis 2629 species 1903416 2 0 family 648 8 82984 genus 648 1 0 Pragia 2 82985 1 0 Pragia fontium 640 species 1903409 128 Erwiniaceae 0 28 28602 family 1 51228 1 2 0 Wigglesworthia 1 genus 954 51229 0 1 Wigglesworthia glossinidia species 953 0 11 Pantoea 11858 genus 1 53335 483 1076550 1 0 Pantoea rwandensis 796 species 470934 0 Pantoea vagans 1 species 1871 2630326 no rank 3123 3 0 0 1 Pantoea sp. PSNIH1 1019 species 1484158 1 0 Pantoea sp. PSNIH2 1190 species 1484157 592316 Pantoea sp. At-9b 0 1 species 914 species 1585 0 1 Pantoea ananatis 553 1891675 species 861 0 1 Pantoea alhagi 1654067 species group 1531 0 1 0 1 Pantoea agglomerans species 1531 549 species 1022 0 Candidatus Pantoea carbekii 1 1235990 66269 species 586 0 Pantoea stewartii 1 32199 11 2 0 Buchnera genus 6089 1 1 0 Buchnera aphidicola species 6078 9 32 82986 1 genus 694 Tatumella 0 2 53336 species 662 0 Tatumella citrea 1 8 0 Erwinia 1 6202 genus 551 149 0 Erwinia gerundensis 1 1159 species 1619313 338565 0 Erwinia tasmaniensis 1 813 species 79967 0 1 Erwinia pyrifoliae 569 species 1 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 807 species 1922217 1 0 Erwinia billingiae 1348 species 182337 552 1 0 Erwinia amylovora species 743 614 no rank 1 0 2622719 species 614 1 0 Erwinia sp. Ejp617 215689 0 2 2677 genus 2100764 species 1230 0 Pantoea gaviniae 1 665914 665913 1447 species 1 0 Pantoea calida 20511 family 1 0 20 Pectobacteriaceae 40 1903410 0 6 Pectobacterium 1 genus 8053 122277 230 0 Pectobacterium atrosepticum 1 species 687 29471 species 910 1 0 Pectobacterium parmentieri 1905730 2042057 Pectobacterium polaris 0 1 1546 species 0 1 Pectobacterium wasabiae 771 species 55208 0 Pectobacterium carotovorum 1 species 3909 554 1 8746 genus 0 Dickeya 6 295 204037 1234 species 1 0 Dickeya dadantii 204038 species 1286 0 1 Dickeya fangzhongdai 1778540 Dickeya dianthicola 0 1 1383 species 204039 204042 2268 species 1 0 Dickeya zeae 1089444 Dickeya solani 0 1 species 2280 0 Brenneria 2 1 1065 genus 71655 13 1052 species 0 Brenneria goodwinii 1 1109412 0 Sodalis 5 genus 2607 1 84565 81 0 Sodalis glossinidius 1 species 762 63612 289 species 0 1 Sodalis endosymbiont of Henestaris halophilus 1929246 1486991 species 567 0 1 Candidatus Sodalis pierantonius 1239307 species 908 Sodalis praecaptivus 0 1 28340 order 1 33 0 Thiotrichales 25 72273 1 1389 family 4 0 Thiotrichaceae 15 135617 0 1 392 genus 40751 1 0 Thioploca ingrica species 392 40754 1021 38 0 Beggiatoa 2 982 genus 1 288004 0 1 Beggiatoa leptomitoformis 944 species 5454 family 1 13 0 Piscirickettsiaceae 15 135616 1 2284 genus Cycloclasticus 0 4 8 34067 no rank 1483 0 2 2621467 728003 0 Cycloclasticus sp. PY97N 1 species 628 385025 1 0 Cycloclasticus sp. P1 855 species 1329899 793 species Cycloclasticus zancles 0 1 6 40222 1 genus 904 Methylophaga 0 3 384 species 0 Methylophaga frappieri 1 754477 754476 species 514 Methylophaga nitratireducenticrescens 0 1 28884 1 0 genus 296 39765 species 296 Hydrogenovibrio crunogenus 0 1 1237 1017 genus 0 1 1238 1017 species 1 0 Piscirickettsia salmonis 1 933 1 genus 938 Thiomicrospira 0 3 0 1 Thiomicrospira aerophila 375 species 92245 147268 1 0 Thiomicrospira cyclica 562 species 1 21472 family 0 Francisellaceae 15 41 34064 262 69 0 12 Francisella 21116 genus 1 0 1 Francisella philomiragia species 3372 28110 0 2 1698 no rank 2610885 1547445 1022 species 0 Francisella sp. FSC1006 1 0 Francisella sp. MA067296 1 676 species 475375 657445 0 1 Francisella noatunensis species 2744 1542390 species 679 0 1 Francisella sp. CA97-1460 622488 species 1412 Francisella hispaniensis 0 1 263 4701 species 1 0 Francisella tularensis 1 0 Francisella sp. TX077310 2980 species 573570 0 1 Francisella persica species 878 954 549298 1 0 Francisella halioticida species 1546 573569 species 1037 Francisella sp. TX077308 0 1 1 genus 315 2 0 Allofrancisella 1 1869285 species 314 Allofrancisella guangzhouensis 0 1 594679 65 1692040 1 1707 order 6 0 Acidiferrobacterales family 1642 1 0 Acidiferrobacteraceae 5 44 1692041 10 1744881 844 genus 1 0 Sulfuricaulis 2 0 Sulfuricaulis limicola 1 834 species 1620215 1 754 genus 0 2 Sulfurifustis 12 1692042 species 742 0 1 Sulfurifustis variabilis 1675686 5 0 3347 order 1240482 0 5 Orbaceae family 3347 1 1240483 15 1335631 3 0 2 Frischella genus 1294 1 0 Frischella perrara 1 1291 species 1267021 1193503 2 Gilliamella 0 2 2038 genus 1 0 Gilliamella apicola 1 2036 species 1196095 135622 159 105 0 Alteromonadales 75435 order 1 267889 55 0 Colwelliaceae 9 1 8186 family 11 1518149 1075 genus 1 0 2 Thalassotalea 1763536 Thalassotalea crassostreae 0 1 1064 species 1 genus 7056 0 Colwellia 6 17 28228 993 species 1 0 Colwellia psychrerythraea 28229 196834 3 0 no rank 4038 Colwellia sp. MT41 0 1 species 1948 58049 1816219 607 species 0 1 Colwellia sp. PAMC 21821 0 Colwellia sp. PAMC 20917 1 species 1483 1816218 1967665 species 2008 1 0 Colwellia beringensis 16978 family 1 Shewanellaceae 0 25 83 267890 22 210 0 24 Shewanella 16895 genus 1 56812 1 0 Shewanella frigidimarina species 758 3488 no rank 6 0 196818 792 species 0 Shewanella sp. MR-4 1 60480 2029986 1 0 Shewanella sp. WE21 470 species 516 species 1 0 Shewanella sp. ANA-3 94122 0 Shewanella sp. W3-18-1 1 752 species 351745 2059264 1 0 Shewanella sp. Pdp11 species 459 60481 0 1 Shewanella sp. MR-7 species 499 404011 316 species 0 Shewanella piezotolerans 1 2018305 423 species 1 0 Shewanella bicestrii 0 1 Shewanella denitrificans species 572 192073 1 0 Shewanella amazonensis 810 species 60478 93973 1 0 Shewanella japonica species 625 1 0 Shewanella marisflavi species 1061 260364 60217 0 1 Shewanella violacea species 453 359303 874 species Shewanella loihica 0 1 Shewanella pealeana 0 1 585 species 70864 271097 Shewanella sediminis 0 1 361 species 70863 Shewanella oneidensis 0 1 1023 species 60961 Shewanella woodyi 0 1 species 622 24 0 Shewanella putrefaciens 1 619 species 271098 species 717 Shewanella halifaxensis 0 1 0 1 Shewanella psychrophila 1223 species 225848 62322 Shewanella baltica 0 1 2155 species 267894 8 0 Psychromonadaceae 3 2174 family 1 67572 2 0 genus 2166 1 0 Psychromonas ingrahamii 1277 species 357794 0 1 889 no rank 2614957 889 species 1 0 Psychromonas sp. CNPT3 314282 1 family 24164 Pseudoalteromonadaceae 0 25 12 267888 53246 266 24 0 Pseudoalteromonas 1 24152 genus Pseudoalteromonas tetraodonis 0 1 1321 species 43659 861 species Pseudoalteromonas nigrifaciens 0 1 28109 28107 0 Pseudoalteromonas espejiana 1 species 615 0 Pseudoalteromonas haloplanktis 1 1102 species 228 298657 species 2024 Pseudoalteromonas spongiae 0 1 0 Pseudoalteromonas agarivorans 1 566 species 176102 267375 Pseudoalteromonas marina 0 1 species 527 species 1043 Pseudoalteromonas phenolica 0 1 161398 592 species 1 0 Pseudoalteromonas arctica 394751 1 0 Pseudoalteromonas issachenkonii species 1690 152297 43662 0 Pseudoalteromonas piscicida 1 1302 species 43658 1 0 Pseudoalteromonas rubra species 716 166935 species 643 Pseudoalteromonas translucida 0 1 1348114 0 Pseudoalteromonas piratica 1 776 species Pseudoalteromonas luteoviolacea 0 1 658 species 43657 194690 5631 no rank 0 5 species 687 0 Pseudoalteromonas sp. NC201 1 1514074 1 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1275 1720343 species 1630 1 0 Pseudoalteromonas sp. Bsw20308 283699 1347 species 1 0 Pseudoalteromonas sp. SM9913 234831 1761891 692 species Pseudoalteromonas sp. 13-15 0 1 0 1 Pseudoalteromonas tunicata 1472 species 314281 247523 1 0 Pseudoalteromonas aliena 931 species 288 1 0 Pseudoalteromonas atlantica species 1416 267893 5 0 Idiomarinaceae 6 1 family 2646 1 2641 genus 5 0 Idiomarina 25 135575 135577 species 1012 0 1 Idiomarina loihiensis 1 0 Idiomarina piscisalsi species 240 1096243 0 2 1364 no rank 2614829 Idiomarina sp. X4 0 1 746 species 2055892 2100422 1 0 Idiomarina sp. OT37-5b species 618 18 267892 1 1232 family 0 3 Ferrimonadaceae 1 genus 1214 Ferrimonas 0 2 58 44011 44012 species 1156 1 0 Ferrimonas balearica 111 72275 family 18095 1 0 30 Alteromonadaceae 261825 3 2 0 Agarivorans 1 genus 739 0 1 Agarivorans gilvus species 736 680279 1 genus 443 Paraglaciecola 0 2 3 1621534 0 1 Paraglaciecola psychrophila 440 species 326544 2 89404 1 899 genus 3 0 Glaciecola 2618684 1 0 417 no rank 983545 0 Glaciecola sp. 4H-3-7+YE-5 1 species 417 300231 480 species 0 Glaciecola nitratireducens 1 11 1751872 genus 1121 1 0 Lacimicrobium 2 1526571 Lacimicrobium alkaliphilum 0 1 1110 species 226 123 10 0 Alteromonas genus 7646 1 2614992 no rank 1483 0 3 2058133 0 1 Alteromonas sp. MB-3u-76 species 350 1777491 0 Alteromonas sp. Mac1 1 768 species 365 species 1 0 Alteromonas sp. RW2A1 1917158 0 Alteromonas addita 1 735 species 287094 1375 species 1 0 Alteromonas macleodii 28108 species 628 1 0 Alteromonas australica 589873 0 1 Alteromonas stellipolaris 1144 species 233316 Alteromonas mediterranea 0 1 species 1474 314275 715451 species 684 1 0 Alteromonas naphthalenivorans 7136 genus 1 10 0 Marinobacter 117 2742 0 1 Marinobacter hydrocarbonoclasticus species 1151 2743 1874317 520 species 0 1 Marinobacter salinus 83889 no rank 2434 3 0 1749259 species 1179 Marinobacter sp. LQ44 0 1 555 species 0 1 Marinobacter sp. BSs20148 490759 1671721 Marinobacter sp. CP1 0 1 species 700 1420916 736 species 0 Marinobacter similis 1 0 Marinobacter adhaerens 1 species 700 1033846 0 Marinobacter psychrophilus 1 species 464 330734 1420917 0 Marinobacter salarius 1 1014 species 267891 1 0 Moritellaceae 3 1 1801 family genus 1800 1 Moritella 0 2 15 58050 80854 0 Moritella viscosa 1 1785 species 1757 no rank 0 2 33811 83406 species 685 0 gamma proteobacterium HdN1 1 0 1 endosymbiont of unidentified scaly snail isolate Monju species 1072 1248727 351 135613 order 24266 1 50 0 Chromatiales 9241 family 1 18 0 Chromatiaceae 137 1046 2 0 Allochromatium 1 genus 1488 85072 5 1049 species 1483 0 1 Allochromatium vinosum 3 156885 genus 863 1 0 Thioflavicoccus 2 Thioflavicoccus mobilis 0 1 860 species 80679 68 85076 1 1217 genus 0 2 Marichromatium 1149 species Marichromatium purpuratum 0 1 37487 1 0 845 no rank 82569 1978339 species 845 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 1 53392 9 Thiodictyon 0 2 genus 2002 1 species 1993 0 Candidatus Thiodictyon syntrophicum 1 1166950 2 1980513 490 genus 1 0 Candidatus Nitrosoglobus 2 species 488 Candidatus Nitrosoglobus terrae 0 1 1630141 9 1227 1186 genus 1 4 0 Nitrosococcus 133539 species 361 Nitrosococcus halophilus 0 1 species 389 0 Nitrosococcus oceani 1 1229 species 427 1 0 Nitrosococcus watsonii 473531 13724 33 Thiocystis 0 2 1 genus 1013 73141 0 1 Thiocystis violascens species 980 family 1077 1 0 Halothiobacillaceae 4 5 255526 1 1072 genus 3 0 Halothiobacillus 53 109262 1 0 Halothiobacillus neapolitanus 441 species 927 2636392 0 1 578 no rank 578 species 0 1 Halothiobacillus sp. LS2 1860122 147 72276 1 family 9281 0 Ectothiorhodospiraceae 18 1051 6 2 0 Ectothiorhodospira 1 genus 1142 1 0 no rank 1136 2684909 0 1 Ectothiorhodospira sp. BSL-9 species 1136 1442136 106633 52 6 0 Thioalkalivibrio genus 4451 1 675 no rank 1 0 2621013 0 Thioalkalivibrio sp. K90mix 1 species 675 396595 592 species 0 Thioalkalivibrio paradoxus 1 108010 186931 0 1 Thioalkalivibrio nitratireducens 549 species 0 1 Thioalkalivibrio versutus 900 species 106634 1033854 1 0 Thioalkalivibrio sulfidiphilus species 1683 13 1335745 1 810 genus 0 3 Spiribacter 1335757 species 519 0 1 Spiribacter curvatus 1335746 0 1 Spiribacter salinus species 278 1765964 8 0 Acidihalobacter 2 1 624 genus 160660 species 616 Acidihalobacter prosperus 0 1 47 133193 genus 1073 1 0 Alkalilimnicola 2 351052 1 0 Alkalilimnicola ehrlichii 1026 species 2 0 Halorhodospira 1034 genus 1 85108 2 1053 1032 species 0 Halorhodospira halophila 1 449719 family 1123 1 0 1123 genus 1 0 437504 437505 1123 species 0 Granulosicoccus antarcticus 1 1426 no rank 0 2 451214 1273155 47 Thiohalobacter 0 2 1426 genus 1 0 Thiohalobacter thiocyanaticus 1 species 1379 585455 1 650 family 0 Woeseiaceae 3 1 1738654 genus 649 1 0 2 Woeseia 2 1738655 species 647 0 1 Woeseia oceani 1548547 Wenzhouxiangellaceae 0 3 1 family 1117 1676141 9 46 1676142 1 1108 genus 2 0 Wenzhouxiangella species 1062 Wenzhouxiangella marina 0 1 1579979 11 0 no rank 6412 118884 1524249 genus 625 0 1 1249552 0 Pseudohongiella spirulinae 1 species 625 3 655184 1 786 genus Candidatus Thioglobus 0 3 species 362 Candidatus Thioglobus autotrophicus 0 1 1705394 species 421 Candidatus Thioglobus singularis 0 1 1427364 32036 clade 1916 3 0 1 0 genus 420 1541743 0 1 Candidatus Ruthia magnifica 420 species 386487 0 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 227 species 113267 0 Calyptogena okutanii thioautotrophic gill symbiont 1 species 1269 410330 13 1608298 1 genus 732 0 Thiolapillus 2 Thiolapillus brandeum 0 1 species 719 1076588 198346 0 1 1501 clade 186490 species 1501 Candidatus Baumannia cicadellinicola 0 1 852 genus 1 0 349742 Sedimenticola thiotaurini 0 1 852 species 1543721 Nevskiales 0 4 1 753 order 1775403 9 12 family Sinobacteraceae 0 1 568386 0 2 family 732 2689614 732 genus 1 2 0 Steroidobacter 2 469322 465721 0 Steroidobacter denitrificans 1 730 species 135625 24 0 31 Pasteurellales 40568 order 1 712 1257 0 30 Pasteurellaceae family 40544 1 0 Gallibacterium 2 1498 genus 1 155493 2 0 1 Gallibacterium anatis species 1496 750 1 3166 genus 2 0 Basfia 2 697331 157673 [Mannheimia] succiniciproducens 0 1 3164 species 0 1 2160 genus 214906 731 0 Histophilus somni 1 2160 species 416916 117 3 0 Aggregatibacter 1 genus 4741 1497 species Aggregatibacter aphrophilus 0 1 732 714 Aggregatibacter actinomycetemcomitans 0 1 3127 species 203 75984 genus 5341 1 Mannheimia 0 4 Mannheimia haemolytica 0 1 1732 species 75985 2645054 0 1 no rank 961 Mannheimia sp. USDA-ARS-USMARC-1261 0 1 961 species 1432056 Mannheimia varigena 0 1 species 2445 85404 2094023 genus 2923 0 1 0 Glaesserella parasuis 1 species 2923 738 745 1 0 3 Pasteurella 1 genus 3719 747 0 1 Pasteurella multocida species 2684 species 1034 0 Pasteurella dagmatis 1 754 0 6 Haemophilus 1 genus 8739 724 39 species 586 1 0 Haemophilus pittmaniae 249188 727 Haemophilus influenzae 0 1 4968 species 0 Haemophilus parainfluenzae 1 938 species 729 2609962 no rank 716 1 0 712310 Haemophilus sp. oral taxon 036 0 1 species 716 730 [Haemophilus] ducreyi 0 1 species 1492 0 2 Bibersteinia 2332 genus 1 476528 1 47735 0 Bibersteinia trehalosi 1 2331 species 713 50 Actinobacillus 0 5 1 genus 4668 715 Actinobacillus pleuropneumoniae 0 1 species 1564 718 1 0 Actinobacillus equuli 1521 species 67854 698 species 0 1 Actinobacillus succinogenes 716 835 species 0 Actinobacillus suis 1 118969 26 20 0 Legionellales 1 order 13784 Legionellaceae 0 14 12372 family 1 444 39 genus 11441 1 12 0 Legionella 47 445 species 1418 0 Legionella oakridgensis 1 29423 1231 species 0 1 Legionella fallonii 96230 45067 0 Legionella lansingensis 1 species 927 452 0 Legionella spiritensis 1 species 350 450 468 species Legionella longbeachae 0 1 0 Legionella sainthelensi 1 species 602 28087 66969 Legionella waltersii 0 1 1043 species 1867846 Legionella clemsonensis 0 1 species 1158 446 0 Legionella pneumophila 1 3372 species 449 0 1 Legionella hackeliae species 635 0 1 Legionella endosymbiont of Polyplax serrata species 190 2005262 892 genus 0 1 465 451 0 Tatlockia micdadei 1 892 species 5 0 Coxiellaceae 1 family 1386 118968 25 0 Coxiella 3 1 1118 genus 776 1 2676648 0 1 243 no rank 243 species 0 1 Coxiella endosymbiont of Amblyomma americanum 325775 0 1 Coxiella burnetii 874 species 777 134284 243 no rank 0 1 1592897 243 species 1 0 Coxiella-like endosymbiont 424 135619 1 35036 order Oceanospirillales 0 64 1386 family 1 0 4 Saccharospirillaceae 1 255527 1 922 genus 2 0 Gynuella 9 1445504 species 913 Gynuella sunshinyii 0 1 1445505 0 1 genus 463 230494 1336806 0 Reinekea forsetii 1 463 species 224379 5 Hahellaceae 0 3 755 family 1 2 0 Hahella 1 genus 750 158481 6 744 species 0 1 Hahella chejuensis 158327 0 9 Alcanivoracaceae 1 4942 family 224372 34 genus 795 1 0 2 Ketobacter 3 2025617 1917421 0 Ketobacter alkanivorans 1 species 792 59753 118 0 6 Alcanivorax 1 genus 4113 0 Alcanivorax pacificus 1 species 1285 1306787 species 881 0 Alcanivorax xenomutans 1 1094342 no rank 407 1 0 2638842 1113728 species 407 0 Alcanivorax sp. NBRC 101098 1 285091 1 0 Alcanivorax dieselolei 1000 species 59754 422 species 0 1 Alcanivorax borkumensis 1920240 4 0 6 Kangiellaceae family 2451 1 65 261963 1 genus 2447 0 5 Kangiella 1144748 0 1 Kangiella sediminilitoris species 1351 1 0 Kangiella profundi species 546 1561924 261964 species 257 0 Kangiella koreensis 1 914150 0 Kangiella geojedonensis 1 species 228 263 28256 1 18460 family Halomonadaceae 0 29 504090 18 Kushneria 0 3 2328 genus 1 698828 1211 species 0 1 Kushneria konosiri 157779 species 1099 0 Kushneria marisflavi 1 3 0 no rank 584 114403 235572 genus 73 1 0 0 Candidatus Portiera aleyrodidarum 1 species 73 91844 1495768 genus 363 1 0 1495769 species 363 0 1 Candidatus Evansia muelleri 148 genus 1 0 114185 114186 148 species 0 1 Candidatus Carsonella ruddii 312 2745 1 11450 genus Halomonas 0 15 0 1 Halomonas beimenensis species 1343 475662 546 species 0 Halomonas huangheensis 1 1178482 507626 species 985 1 0 Halomonas chromatireducens 1 0 Halomonas campaniensis species 342 213554 species 1161 0 Halomonas aestuarii 1 1897729 2609666 no rank 5809 8 0 1949203 0 Halomonas sp. 'Soap Lake #6' 1 566 species 1504981 species 347 0 1 Halomonas sp. KO116 1962264 566 species 0 1 Halomonas sp. 'Soap Lake #7' 2136172 species 1138 1 0 Halomonas sp. SF2003 1971364 species 568 0 Halomonas sp. GT 1 0 Halomonas sp. R57-5 1 species 827 1610576 1883416 0 1 Halomonas sp. 1513 1482 species 1118153 0 Halomonas sp. GFAJ-1 1 species 315 115561 952 species 0 1 Halomonas hydrothermalis 882 genus 1 0 2 Chromohalobacter 19 42054 species 863 0 Chromohalobacter salexigens 1 158080 204286 4 0 Cobetia 2 1 genus 1055 28258 0 Cobetia marina 1 species 1051 404432 genus 1116 1 0 1771309 0 Salinicola tamaricis 1 species 1116 0 Halotalea 2 1 genus 782 376488 52 0 1 Halotalea alkalilenta species 730 376489 191033 family 557 1 0 141450 1 0 557 genus Oleiphilus messinensis 0 1 557 species 141451 0 Oceanospirillaceae 11 1 family 6061 135620 75 187492 0 1 386 genus 187493 1 0 Thalassolituus oleivorans species 386 188907 genus 1026 1 0 1026 species 0 1 Oleispira antarctica 188908 48075 12 2 0 Marinobacterium 1 genus 1186 0 Marinobacterium aestuarii 1 species 1174 1821621 13 1537406 1 650 genus Bacterioplanes 0 2 637 species 0 1 Bacterioplanes sanyensis 1249553 28253 4 Marinomonas 0 4 genus 2738 1 119864 620 species 0 Marinomonas mediterranea 1 1416 no rank 0 1 196814 1 0 Marinomonas sp. MWYL1 1416 species 400668 0 Marinomonas posidonica 1 698 species 936476 828 72274 1 order 179751 129 0 Pseudomonadales 135621 775 0 Pseudomonadaceae 86 132694 family 1 0 Pseudomonas 80 1 genus 127606 286 5153 136849 8 0 species group 11446 2775504 539 no rank 0 1 1206777 species 539 Pseudomonas sp. Lz4W 0 1 Pseudomonas syringae group genomosp. 3 0 1 1311 species 251701 1 0 Pseudomonas viridiflava 1153 species 33069 46257 species 667 0 Pseudomonas avellanae 1 251695 1 0 4749 species subgroup 4749 species 0 1 Pseudomonas syringae 317 species 587 1 0 Pseudomonas cichorii 36746 251698 2440 species subgroup 0 2 1298 species 0 Pseudomonas savastanoi 1 29438 47877 1 0 Pseudomonas amygdali 1142 species 196821 30 0 no rank 26268 1931241 1 0 Pseudomonas sp. S-6-2 630 species 1856685 0 Pseudomonas sp. TCU-HL1 1 1438 species 1259844 species 921 1 0 Pseudomonas sp. FGI182 Pseudomonas sp. SWI36 0 1 813 species 2083052 69328 species 834 1 0 Pseudomonas sp. VLB120 Pseudomonas sp. FDAARGOS_380 0 1 879 species 2018067 1930532 694 species Pseudomonas sp. CC6-YY-74 0 1 1534110 species 811 0 Pseudomonas sp. DR 5-09 1 1207075 0 1 Pseudomonas sp. UW4 740 species 2083051 0 1 Pseudomonas sp. SWI6 642 species 1189 species 0 Pseudomonas sp. Os17 1 1500686 species 399 0 1 Pseudomonas sp. M30-35 1981174 species 1078 0 1 Pseudomonas sp. LH1G9 2083055 0 Pseudomonas sp. GR 6-02 1 555 species 1659194 1 0 Pseudomonas sp. LG1D9 844 species 2083054 2069256 1 0 Pseudomonas sp. XWY-1 652 species 977 species Pseudomonas sp. MRSN12121 0 1 1611770 710 species 0 1 Pseudomonas sp. NC02 2067572 638 species Pseudomonas sp. TKP 0 1 1415630 656 species 1 0 Pseudomonas sp. HLS-6 2049589 1 0 Pseudomonas sp. JY-Q 758 species 1338689 926 species Pseudomonas sp. LPH1 0 1 1898684 1097 species Pseudomonas sp. PONIH3 0 1 1636610 Pseudomonas sp. ATCC 13867 0 1 species 1480 1294143 1028989 1 0 Pseudomonas sp. StFLB209 1037 species Pseudomonas sp. URMO17WK12:I11 0 1 1168 species 1283291 2083053 species 773 1 0 Pseudomonas sp. SWI44 1827300 species 564 0 Pseudomonas sp. MYb193 1 1649877 1120 species Pseudomonas sp. CCOS 191 0 1 1245 species Pseudomonas sp. St29 0 1 1500687 species 1113 1 0 Pseudomonas alcaliphila 101564 237610 1231 species 0 1 Pseudomonas psychrotolerans 104087 0 1 Pseudomonas frederiksbergensis 1870 species 237609 744 species 1 0 Pseudomonas alkylphenolica 1583341 735 species 0 1 Pseudomonas cerasi 65741 species 1379 1 0 Pseudomonas knackmussii 136842 0 2 species group 6290 587753 0 Pseudomonas chlororaphis 1 4751 species 296 Pseudomonas fragi 0 1 1539 species 606 species Pseudomonas lurida 0 1 244566 216142 species 919 Pseudomonas rhizosphaerae 0 1 726 species Pseudomonas cremoricolorata 0 1 157783 0 Pseudomonas brassicacearum 1 species 2132 930166 1788301 species 707 Pseudomonas versuta 0 1 136846 2 0 8100 species group 74829 869 species 0 1 Pseudomonas balearica 578833 species subgroup 7231 0 1 316 7231 species Pseudomonas stutzeri 0 1 16644 species group 9 0 136843 0 1 Pseudomonas fluorescens 9337 species 294 75612 1 0 Pseudomonas mandelii 864 species 76758 Pseudomonas orientalis 0 1 699 species 749 species Pseudomonas veronii 0 1 76761 380021 1227 species 0 1 Pseudomonas protegens 0 Pseudomonas poae 1 species 718 200451 47878 0 Pseudomonas azotoformans 1 species 1298 47879 species 769 1 0 Pseudomonas corrugata 1 0 Pseudomonas trivialis species 983 200450 762 species 0 1 Pseudomonas silesiensis 1853130 0 1 Pseudomonas entomophila species 1030 312306 16874 species group 6 0 136841 43263 species 1416 0 Pseudomonas alcaligenes 1 287 5140 species 1 0 Pseudomonas aeruginosa 53408 Pseudomonas citronellolis 0 1 3281 species 3747 species Pseudomonas mendocina 0 1 300 1232139 1781 species subgroup 0 1 1 0 Pseudomonas furukawaii 1781 species 1149133 53412 species 1509 1 0 Pseudomonas resinovorans species 824 1 0 Pseudomonas antarctica 219572 136845 19206 species group 0 6 76759 2366 species 1 0 Pseudomonas monteilii 303 Pseudomonas putida 0 1 10815 species 47880 0 Pseudomonas fulva 1 1768 species 47885 0 Pseudomonas oryzihabitans 1 1367 species Pseudomonas mosselii 0 1 1978 species 78327 0 Pseudomonas plecoglossicida 1 species 912 70775 198620 0 Pseudomonas koreensis 1 species 1311 1536 species 0 1 Pseudomonas parafulva 157782 genus 719 1 2 0 Oblitimonas 4 1849530 1697053 Oblitimonas alkaliphila 0 1 species 715 3594 subfamily 3 0 351 13 352 1 genus 3594 0 Azotobacter 3 353 2129 species Azotobacter chroococcum 0 1 354 1 0 Azotobacter vinelandii species 1452 1 46229 family 0 Moraxellaceae 42 90 468 74 497 1 5612 genus 11 0 Psychrobacter 196806 no rank 3073 0 6 571800 species 322 1 0 Psychrobacter sp. G 1028416 species 556 0 Psychrobacter sp. DAB_AL43B 1 1720344 821 species 0 1 Psychrobacter sp. AntiMn-1 1699622 233 species 0 Psychrobacter sp. P2G3 1 349106 species 713 0 Psychrobacter sp. PRwf-1 1 1699624 Psychrobacter sp. P11G5 0 1 species 428 45610 1 0 Psychrobacter urativorans 347 species 334543 1 0 Psychrobacter arcticus species 777 species 332 0 Psychrobacter cryohalolentis 1 330922 0 1 Psychrobacter alimentarius species 1009 261164 5 0 Moraxella 1 4464 genus 475 800 386891 1372 species 0 1 Moraxella bovoculi 1 0 Moraxella osloensis 1289 species 34062 0 1 Moraxella catarrhalis species 551 480 29433 Moraxella ovis 0 1 species 452 0 Acinetobacter 25 36063 genus 1 469 361 106648 1225 species 0 Acinetobacter bereziniae 1 species 918 0 1 202950 strain 918 0 Acinetobacter sp. ADP1 1 62977 877 species 0 1 Acinetobacter larvae 1789224 no rank 5218 0 7 196816 0 Acinetobacter sp. LoGeW2-3 1 species 1111 1808001 1646498 species 569 0 1 Acinetobacter sp. TTH0-4 1608473 0 1 Acinetobacter sp. NCu2D-2 species 681 species 793 0 1 Acinetobacter sp. ACNIH1 1636603 0 Acinetobacter sp. SWBY1 1 species 723 2079596 1407071 species 701 1 0 Acinetobacter sp. TGL-Y2 640 species 1 0 Acinetobacter sp. ACNIH2 1758189 1148157 species 1310 0 Acinetobacter oleivorans 1 749 species Acinetobacter soli 0 1 487316 0 1 Acinetobacter equi species 2671 1324350 756892 0 Acinetobacter indicus 1 species 864 909768 0 5 15536 species group 471 2933 species 1 0 Acinetobacter calcoaceticus species 4826 0 Acinetobacter pittii 1 48296 470 1 0 Acinetobacter baumannii species 5093 1785128 980 species Acinetobacter lactucae 0 1 0 1 Acinetobacter nosocomialis 1704 species 106654 1 0 Acinetobacter haemolyticus species 1707 29430 species 1017 Acinetobacter radioresistens 0 1 40216 613 species 1 0 Acinetobacter johnsonii 40214 108981 species 1242 0 1 Acinetobacter schindleri 40215 0 Acinetobacter junii 1 1755 species 57305 order 1 Xanthomonadales 0 53 430 135614 38 0 Xanthomonadaceae 1 family 46379 32033 490 1023 338 18456 genus 1 0 Xanthomonas 17 29447 species 643 Xanthomonas albilineans 0 1 0 Xanthomonas campestris 1 species 2190 339 species 860 Xanthomonas axonopodis 0 1 53413 Xanthomonas vesicatoria 0 1 856 species 56460 species 664 Xanthomonas euvesicatoria 0 1 456327 0 1 Xanthomonas phaseoli species 756 1985254 0 1 Xanthomonas perforans 870 species 442694 343 species 1667 Xanthomonas translucens 0 1 347 species 1601 0 1 Xanthomonas oryzae 643453 0 2 species group 3602 917 species 1 0 Xanthomonas fuscans 366648 346 2685 species Xanthomonas citri 0 1 0 Xanthomonas hortorum 1 788 species 56454 48664 0 Xanthomonas fragariae 1 species 446 1302 species Xanthomonas sacchari 0 1 56458 species 654 Xanthomonas alfalfae 0 1 366650 0 1 Xanthomonas vasicola 534 species 56459 17174 genus 1 0 9 Stenotrophomonas 460 40323 83617 species 1037 0 Stenotrophomonas nitritireducens 1 196198 4485 no rank 4 0 0 Stenotrophomonas sp. WZN-1 1 1161 species 2005046 1827305 species 948 0 1 Stenotrophomonas sp. MYb57 1 0 Stenotrophomonas sp. KCTC 12332 1065 species 1793721 1904944 1311 species 0 1 Stenotrophomonas sp. LM091 128780 1 0 Stenotrophomonas acidaminiphila 2358 species 216778 0 Stenotrophomonas rhizophila 1 1080 species 0 1 species group 7754 995085 species 7754 Stenotrophomonas maltophilia 0 1 40324 1 0 genus 684 2370 1 0 Xylella fastidiosa 684 species 2371 68 82 0 5 Lysobacter 5635 genus 1 84531 0 1 Lysobacter antibioticus species 1141 Lysobacter gummosus 0 1 species 1281 262324 species 1471 0 1 Lysobacter enzymogenes 69 1660 species 0 1 Lysobacter capsici 435897 83614 4 2 0 Luteimonas genus 847 1 2006110 species 843 Luteimonas sp. 100111 0 1 0 Pseudoxanthomonas 3 1 3093 genus 83618 95 species 1062 1 0 Pseudoxanthomonas spadix 415229 314722 species 1936 Pseudoxanthomonas suwonensis 0 1 1 10496 family 14 0 Rhodanobacteraceae 129 1775411 1 0 genus 605 2233801 605 species 0 Xanthomonadales bacterium D13 1 2021234 0 Dyella 4 genus 4638 1 231454 81 1610 species 0 Dyella thiooxydans 1 445710 1605 species 1 0 Dyella japonica 231455 1379159 0 Dyella jiangningensis 1 1342 species 934 genus 1 0 Frateuria 2 21 70411 species 913 0 1 Frateuria aurantia 81475 2 0 Luteibacter 828 genus 1 242605 9 Luteibacter rhizovicinus 0 1 819 species 242606 75309 39 0 Rhodanobacter 2 genus 1740 1 species 1701 1 0 Rhodanobacter denitrificans 666685 15 323413 1 1622 genus Dokdonella 0 2 323415 Dokdonella koreensis 0 1 species 1607 1 580370 1 1444 class 0 Zetaproteobacteria 6 580371 4 0 5 Mariprofundales order 1443 1 1 family 1439 Mariprofundaceae 0 4 8 580372 Mariprofundus 0 3 1 1431 genus 377315 1 species 535 0 Mariprofundus ferrinatatus 1 1921087 1921086 0 Mariprofundus aestuarium 1 species 895 28211 1404 0 555 Alphaproteobacteria 381560 class 1 62999 order 1 0 89 Rhodobacterales 405 204455 family 62594 1 0 88 Rhodobacteraceae 1198 31989 genus 1 0 1 Loktanella 245186 Pannonibacter 0 2 genus 2169 1 227873 47 species 2122 0 1 Pannonibacter phragmitetus 121719 0 1 genus 610 188905 0 1 610 no rank 2645469 290400 species 610 1 0 Jannaschia sp. CCS1 0 Phaeobacter 5 6735 genus 1 302485 61 Phaeobacter gallaeciensis 0 1 1841 species 60890 0 Phaeobacter piscinae 1 species 1855 1580596 1844006 species 705 1 0 Phaeobacter porticola 221822 Phaeobacter inhibens 0 1 2273 species 1 1191 genus 2 0 Leisingera 23 191028 133924 0 Leisingera methylohalidivorans 1 1168 species 53945 3 0 4 Octadecabacter 1145 genus 1 1217908 0 1 Octadecabacter antarcticus species 391 species 380 Octadecabacter arcticus 0 1 53946 0 1 Octadecabacter temperatus 371 species 1458307 1 1123 genus 0 Pelagibaca 2 29 360528 1250539 species 1094 1 0 Pelagibaca abyssi 263377 2468 genus 2 0 1229727 1 0 Thiobacimonas profunda 1270 species 0 1 1198 no rank 2640570 1792508 Yangia sp. CCB-MM3 0 1 species 1198 74030 0 1 genus 805 215743 species 805 0 Roseovarius mucosus 1 159345 3 Roseibacterium 0 2 genus 884 1 159346 0 Roseibacterium elongatum 1 881 species 285107 1 2 0 Thioclava genus 696 1 1915078 species 695 0 1 Thioclava nitratireducens 97050 20 3 0 Ruegeria genus 2182 1 2625375 no rank 833 1 0 292414 Ruegeria sp. TM1040 0 1 833 species 89184 species 1329 Ruegeria pomeroyi 0 1 58840 no rank 1373 0 2 853 species 0 1 Rhodobacteraceae bacterium QY30 2033435 1904441 species 520 0 Rhodobacteraceae bacterium 1 2 0 Planktomarina genus 288 1 1284657 2 286 species 1 0 Planktomarina temperata 1284658 10 92944 genus 1488 1 0 Ketogulonicigenium 3 92947 0 Ketogulonicigenium robustum 1 656 species 0 Ketogulonicigenium vulgare 1 species 822 92945 6 309512 1 genus 911 0 Dinoroseobacter 2 905 species 1 0 Dinoroseobacter shibae 215813 1 2433 1031 genus 1 Roseobacter 0 3 species 442 Roseobacter denitrificans 0 1 2434 588 species 0 1 Roseobacter litoralis 42443 1 genus 5059 5 0 Rhodobacter 44 1060 1 0 Rhodobacter sphaeroides 2571 species 1063 2 0 no rank 1350 196779 2033869 species 845 1 0 Rhodobacter sp. CZR27 1850250 505 species 0 Rhodobacter sp. LPB0142 1 1061 0 Rhodobacter capsulatus 1 species 1094 58842 13 2 0 Sagittula 1 1404 genus 2624628 no rank 1391 0 1 2009329 0 1 Sagittula sp. P11 species 1391 299261 1 0 760 genus 299262 species 760 1 0 Tateyamaria omphalii 119541 1 2 0 Rhodobaca 1 genus 554 441209 553 species 0 Rhodobaca barguzinensis 1 1649279 1 0 genus 766 1 0 Ruegeria mobilis 766 species 379347 0 Sulfitobacter 3 genus 1860 1 60136 9 1402135 Sulfitobacter pseudonitzschiae 0 1 1082 species 196795 1 0 no rank 769 0 1 Sulfitobacter sp. AM1-D1 769 species 1917485 1 genus 3256 Celeribacter 0 5 15 875170 species 814 Celeribacter manganoxidans 0 1 1411902 1397108 species 437 1 0 Celeribacter marinus 1758178 755 species 0 Celeribacter ethanolicus 1 1208324 1 0 Celeribacter indicus 1235 species 1097466 8 0 Defluviimonas 2 genus 1274 1 1335048 Defluviimonas alba 0 1 1266 species 34008 73 0 Rhodovulum 4 1 genus 3303 1 0 Rhodovulum sulfidophilum 1622 species 35806 2 0 1608 no rank 2631432 820 species 0 1 Rhodovulum sp. MB263 308754 1564506 788 species 1 0 Rhodovulum sp. P5 1 genus 9453 Paracoccus 0 9 174 265 species 745 1 0 Paracoccus aminophilus 34003 147645 Paracoccus yeei 0 1 1517 species 266 1376 species 1 0 Paracoccus denitrificans 246570 1 0 1158 no rank Paracoccus sp. BM15 0 1 1158 species 1529068 1945662 1 0 Paracoccus contaminans 804 species 0 Paracoccus aminovorans 1 species 1270 34004 1077935 1 0 Paracoccus zhejiangensis 1377 species Paracoccus sp. CBA4604 0 1 1032 species 2065379 genus 871 0 1 2211641 245188 871 species 0 Loktanella vestfoldensis 1 0 1 523 genus 1759396 0 1 523 no rank 2622455 1920883 523 species Marivivens sp. JLT3646 0 1 1 genus 3475 Labrenzia 0 4 74 478070 187304 0 Labrenzia aggregata 1 species 1102 2648686 no rank 2299 0 2 0 1 Labrenzia sp. VG12 1012 species 2021862 species 1287 1 0 Labrenzia sp. CP4 1674922 1 993 genus 2 0 Confluentimicrobium 4 1609958 2643318 no rank 989 1 0 Confluentimicrobium sp. EMB200-NS6 0 1 989 species 1609966 1 0 Thalassococcus 15 genus 436357 367771 46 0 2 Marinovum 1567 genus 1 Marinovum algicola 0 1 species 1521 42444 1 0 genus 281 1579315 Halocynthiibacter arcticus 0 1 species 281 1579316 genus 882 1 0 Antarctobacter 2 4 74032 74033 0 1 Antarctobacter heliothermus species 878 1 order 161450 0 Rhizobiales 207 1685 356 65 335928 family 4677 1 7 0 Xanthobacteraceae 1 genus 1675 2 0 Azorhizobium 56 6 7 0 1 Azorhizobium caulinodans 1619 species 31 152053 1151 genus 1 2 0 Starkeya 1 0 Starkeya novella species 1120 921 0 Xanthobacter 2 1 genus 1786 279 46 species 1740 0 1 Xanthobacter autotrophicus 280 no rank 2803 0 6 119042 1 genus 716 Methyloceanibacter 0 2 20 1484898 1384459 696 species 1 0 Methyloceanibacter caenitepidi 6 1572860 1 genus 1105 0 2 Hartmannibacter 1482074 0 1 Hartmannibacter diazotrophicus species 1099 63 1734920 1 genus 982 0 Pseudorhodoplanes 2 1235591 919 species Pseudorhodoplanes sinuspersici 0 1 0 Hyphomicrobiaceae 19 10321 family 1 45401 71 81 23 Hyphomicrobium 0 4 1 2810 genus 1427356 species 925 0 1 Hyphomicrobium nitrativorans no rank 884 0 1 2619925 884 species 0 Hyphomicrobium sp. MC1 1 717785 species 978 0 Hyphomicrobium denitrificans 1 53399 2 0 Rhodoplanes 1 genus 1142 29407 65 2619116 0 1 1077 no rank 1077 species 0 Rhodoplanes sp. Z2-YC6860 1 674703 0 Filomicrobium 2 550 genus 1 119044 3 0 Candidatus Filomicrobium marinum 1 547 species 1608628 1 genus 912 0 Blastochloris 2 38 59282 0 1 Blastochloris viridis species 874 1079 10 1068 1 580 genus Rhodomicrobium 0 2 species 570 Rhodomicrobium vannielii 0 1 1069 1 genus 3603 0 Devosia 4 141 46913 0 3 3462 no rank 196773 2083786 0 Devosia sp. I507 1 760 species 1643450 1170 species 0 Devosia sp. H5989 1 1736675 0 1 Devosia sp. A16 1532 species genus 653 1 2 0 Pelagibacterium 8 1082930 1 0 Pelagibacterium halotolerans 645 species 531813 26 0 Bradyrhizobiaceae 1 family 26708 41294 381 Rhodopseudomonas 0 2 1 5631 genus 1073 136 1076 0 Rhodopseudomonas palustris 1 5495 species genus 698 1 0 Oligotropha 2 7 40136 691 species 0 1 Oligotropha carboxidovorans 40137 1 809 genus 0 2 Variibacter 6 1649510 803 species 0 1 Variibacter gotjawalensis 1333996 2 911 genus 928 1 3 0 Nitrobacter 0 Nitrobacter hamburgensis 1 524 species 912 913 402 species Nitrobacter winogradskyi 0 1 1 14151 genus 0 11 Bradyrhizobium 411 374 species 897 0 Bradyrhizobium icense 1 1274631 44255 1232 species 1 0 Bradyrhizobium oligotrophicum 1355477 species 2465 0 1 Bradyrhizobium diazoefficiens species 2251 1 0 Bradyrhizobium japonicum 375 0 6 6895 no rank 2631580 1221 species 1 0 Bradyrhizobium sp. CCGE-LA001 1223566 species 1132 0 1 Bradyrhizobium sp. BTAi1 288000 0 Bradyrhizobium sp. ORS 278 1 species 1200 114615 999 species 1 0 Bradyrhizobium sp. ORS 285 115808 376 Bradyrhizobium sp. 0 1 species 1186 2057741 Bradyrhizobium sp. SK17 0 1 species 1157 65 85413 1 4110 genus 5 0 Bosea 3 0 3080 no rank 2653178 0 1 Bosea sp. AS-1 1064 species 2015316 1842539 0 1 Bosea sp. RAC05 species 1175 1792307 Bosea sp. PAMC 26642 0 1 841 species 1526658 965 species 0 1 Bosea vaviloviae 0 1 family 512 119043 256616 0 1 genus 512 species 512 0 1 Parvibaculum lavamentivorans 256618 118882 45 Brucellaceae 0 20 family 7135 1 1 3827 genus 0 Ochrobactrum 5 89 528 271865 0 1 Ochrobactrum sp. A44 911 species 529 1 0 Ochrobactrum anthropi species 1035 571256 Ochrobactrum pituitosum 0 1 997 species 795 species 0 1 Ochrobactrum pseudogrignonense 419475 1 genus 3263 0 Brucella 14 1550 234 236 1 0 Brucella ovis species 30 species 120 1 0 Brucella canis 36855 64 species 0 1 Brucella abortus 235 species 122 1 0 Brucella pinnipedialis 120576 154 species Brucella melitensis 0 1 29459 444163 39 species 0 1 Brucella microti species 254 1 0 Brucella vulpis 981386 1 0 Brucella suis species 47 29461 2632610 738 no rank 0 4 1 0 Brucella sp. 2002734562 25 species 1891098 species 206 0 1 Brucella sp. 09RB8471 1149952 1885919 0 Brucella sp. 141012304 1 species 286 1844051 Brucella sp. 09RB8910 0 1 species 221 Brucella ceti 0 1 species 145 120577 1 family 10776 Bartonellaceae 0 18 12 772 0 17 Bartonella genus 10764 1 773 204 56426 species 637 0 Bartonella clarridgeiae 1 0 Bartonella vinsonii 1 species 470 33047 2645622 no rank 4168 0 6 1933904 1033 species Bartonella sp. WD16.2 0 1 Bartonella sp. JB15 0 1 species 893 1933906 265 species 0 Bartonella sp. Raccoon60 1 1933912 1933907 0 Bartonella sp. JB63 1 species 892 515256 0 Bartonella sp. 1-1C 1 627 species 1933910 1 0 Bartonella sp. A1379B species 458 1 0 Bartonella ancashensis species 304 1318743 33045 955 species 0 1 Bartonella grahamii 1621 species Bartonella apis 0 1 1686310 1 0 Bartonella quintana 403 species 803 species 729 1 0 Bartonella henselae 38323 1 0 Bartonella australis 199 species 388640 85701 species 573 1 0 Bartonella tribocorum 774 species 501 1 0 Bartonella bacilliformis family 2230 1 0 4 Chelatococcaceae 21 2036754 0 Chelatococcus 3 2209 genus 1 28209 91 species 907 1 0 Chelatococcus daeguensis 444444 no rank 1211 1 0 2638111 Chelatococcus sp. CO-6 0 1 1211 species 1702325 0 6 Methylocystaceae 1 1830 family 31993 5 Methylocystis 0 3 1 1042 genus 133 32 2625913 no rank 481 1 0 481 species 0 1 Methylocystis sp. SC2 187303 species 529 0 1 Methylocystis bryophila 655015 45 425 1 genus 783 2 0 Methylosinus 426 0 Methylosinus trichosporium 1 species 738 0 5 Beijerinckiaceae 1386 family 1 45404 4 481 genus 1 Beijerinckia 0 2 20 532 species 461 0 Beijerinckia indica 1 533 Methylocella 0 2 901 genus 1 120652 22 199596 0 1 Methylocella silvestris species 879 97 69277 1 14639 family 0 Phyllobacteriaceae 20 28100 11 0 2 Phyllobacterium 969 genus 1 1867719 species 958 Phyllobacterium zundukense 0 1 245876 12 0 2 Nitratireductor 761 genus 1 0 1 Nitratireductor basaltis species 749 472175 1 genus 9598 0 Mesorhizobium 9 306 68287 0 1 Mesorhizobium sp. B7 species 803 1670800 0 Mesorhizobium loti 1 1221 species 381 0 1 Mesorhizobium opportunistum species 1311 593909 39645 1 0 Mesorhizobium ciceri 1426 species species 1015 0 Mesorhizobium japonicum 1 2066070 71433 species 1234 1 0 Mesorhizobium amorphae 536018 0 1 Mesorhizobium australicum species 1219 0 1 no rank 1063 325217 0 1 Mesorhizobium sp. WSM1497 1063 species 278153 274591 2 2 0 Hoeflea 859 genus 1 857 no rank 1 0 2614931 Hoeflea sp. IMCC20628 0 1 857 species 1620421 1 genus 808 0 Chelativorans 2 4 449972 0 1 no rank 804 2643807 species 804 0 1 Chelativorans sp. BNC1 266779 31988 35 0 2 Aminobacter genus 1547 1 83263 0 1 Aminobacter aminovorans 1512 species Aurantimonadaceae 0 7 4912 family 1 255475 15 414371 14 0 2 Aureimonas genus 881 1 2615206 0 1 867 no rank 1349819 0 1 Aureimonas sp. AU20 species 867 293088 76 4 0 Martelella 1 genus 4016 species 1462 Martelella mediterranea 0 1 293089 2629616 0 1 no rank 1330 686597 0 1 Martelella sp. AD-3 1330 species 1486262 species 1148 1 0 Martelella endophytica 100 119045 17214 family 1 Methylobacteriaceae 0 15 407 534 0 Methylobacterium 9 genus 9351 1 2615210 no rank 3315 0 3 species 1109 0 Methylobacterium sp. AMS5 1 925818 426117 1107 species 0 Methylobacterium sp. 4-46 1 0 Methylobacterium sp. C1 1 1099 species 1479019 1137 species Methylobacterium radiotolerans 0 1 31998 species 1562 0 Methylobacterium aquaticum 1 270351 Methylobacterium phyllosphaerae 0 1 species 884 418223 114616 species 944 0 1 Methylobacterium nodulans 1 0 Methylobacterium oryzae 975 species 334852 genus 1457 1 0 Microvirga 2 32 186650 1882682 1425 species 0 Microvirga ossetica 1 3 0 6306 genus 2282523 29429 species 1070 1 0 Methylobacterium zatmanii 408 Methylobacterium extorquens 0 1 3470 species 223967 species 1766 0 Methylobacterium populi 1 Rhizobiaceae 0 52 family 54622 1 82115 514 0 6 Liberibacter genus 2263 1 34019 7 Liberibacter crescens 0 1 982 species 1273132 34021 species 202 1 0 Candidatus Liberibacter asiaticus 556287 0 Candidatus Liberibacter solanacearum 1 species 202 415 species 0 1 Candidatus Liberibacter americanus 309868 455 species 0 1 Candidatus Liberibacter africanus 34020 Shinella 0 2 1735 genus 1 323620 11 0 1 1724 no rank 2643062 species 1724 1 0 Shinella sp. HZN7 879274 227290 39456 no rank 0 33 1 9852 genus 0 7 Agrobacterium 225 357 species 1342 1 0 Agrobacterium rhizogenes 359 1083 species Agrobacterium vitis 0 1 373 0 2 species group 5303 1183400 358 0 1 Agrobacterium tumefaciens 4202 species 1 0 Agrobacterium fabrum 1101 species 1176649 1899 no rank 0 2 2632611 861208 species 1022 0 1 Agrobacterium sp. H13-3 0 Agrobacterium sp. RAC06 1 species 877 1842536 1840 379 1 genus 27638 24 0 Rhizobium 384 1 0 Rhizobium leguminosarum 6147 species no rank 12379 18 0 2613769 1357 species 0 1 Rhizobium sp. ACO-34A 1571470 2020311 0 1 Rhizobium sp. Kim5 713 species species 1470 Rhizobium sp. Y9 0 1 1914541 1301032 1 0 Rhizobium sp. IE4771 species 895 1125847 710 species 0 Rhizobium sp. NT-26 1 Rhizobium sp. NXC14 0 1 species 666 1981173 2028343 1126 species 1 0 Rhizobium sp. 10195 1703962 8 species 0 Rhizobium sp. N1341 1 Rhizobium sp. N741 0 1 species 2 1703967 1703961 species 140 1 0 Rhizobium sp. N1314 2020312 species 934 1 0 Rhizobium sp. CIAT894 species 1033 1 0 Rhizobium sp. S41 1869170 2020313 Rhizobium sp. TAL182 0 1 species 119 0 Rhizobium sp. NXC24 1 species 1144 2048897 1154 species Rhizobium sp. IRBG74 0 1 424182 8 species 0 Rhizobium sp. N113 1 1703960 1703969 1 0 Rhizobium sp. N324 species 760 140 species 1 0 Rhizobium sp. N731 1703966 398 species 1022 0 Rhizobium tropici 1 2997 species 0 Rhizobium etli 1 29449 56730 1 0 Rhizobium gallicum 1645 species 0 Rhizobium phaseoli 1 1608 species 396 4 1525371 genus 1966 1 0 Neorhizobium 2 399 species 1962 0 Neorhizobium galegae 1 227292 10 0 no rank 10654 1 8464 genus 0 7 Sinorhizobium 262 28105 663276 1 0 species group 2173 380 Sinorhizobium fredii 0 1 species 2173 194963 species 1125 1 0 Sinorhizobium americanum 0 Sinorhizobium medicae 1 794 species 110321 382 0 1 Sinorhizobium meliloti 2128 species 2613772 no rank 1982 2 0 794846 0 Sinorhizobium sp. CCBAU 05631 1 698 species 1842534 1284 species Sinorhizobium sp. RAC02 0 1 1 2190 genus 0 Ensifer 3 13 106591 106592 0 Ensifer adhaerens 1 1107 species 716925 0 Ensifer sojae 1 species 1070 2800060 0 6 2012 order 56 69657 1 family 2012 6 0 Hyphomonadaceae Hyphomonas 0 3 1 genus 1169 85 7 708 species Hyphomonas neptunium 0 1 81032 2630699 454 no rank 0 1 species 454 0 1 Hyphomonas sp. Mor2 1906738 2723 1 0 Hirschia 2 genus 787 1 2724 1 0 Hirschia baltica species 786 0 20 Caulobacterales 1 order 15671 204458 140 76892 294 0 Caulobacteraceae 19 15531 family 1 72 41275 1 genus 4795 0 7 Brevundimonas 862 species 0 Brevundimonas subvibrioides 1 74313 588932 757 species 0 1 Brevundimonas naejangsanensis 41276 0 Brevundimonas vesicularis 1 707 species 2622653 2397 no rank 3 0 1827469 635 species Brevundimonas sp. GW460-12-10-14-LB2 0 1 1938605 945 species 0 Brevundimonas sp. LM2 1 817 species 0 1 Brevundimonas sp. DS20 1532555 20 25 0 2 Phenylobacterium 1117 genus 1 species 1092 0 Phenylobacterium zucineum 1 284016 75 157 0 6 Caulobacter genus 8121 1 1237 species 1 0 Caulobacter segnis 88688 69666 1253 species Caulobacter mirabilis 0 1 0 Caulobacter henricii 1 910 species 69395 155892 0 Caulobacter vibrioides 1 species 2523 0 1 no rank 2041 2648921 species 2041 1 0 Caulobacter sp. K31 366602 8 76890 1 genus 729 0 2 Asticcacaulis 78587 721 species 1 0 Asticcacaulis excentricus 81440 0 1 no rank 475 0 Caulobacteraceae bacterium OTSz_A_272 1 species 475 1759059 204441 471 0 66 Rhodospirillales order 56738 1 577 41295 family 32385 1 30 0 Rhodospirillaceae genus 6842 1 0 Magnetospirillum 5 149 13134 55518 species 1691 1 0 Magnetospirillum gryphiswaldense 84159 species 1796 0 1 Magnetospirillum magneticum 2617991 3206 no rank 2 0 1639348 Magnetospirillum sp. ME-1 0 1 1504 species 1663591 0 1 Magnetospirillum sp. XM-1 1702 species 1543705 7 0 2 Nitrospirillum 2703 genus 1 1 0 Nitrospirillum amazonense 2696 species 28077 2 0 Magnetospira 731 genus 1 1182780 5 2685734 1 0 726 no rank species 726 1 0 Magnetospira sp. QH-2 1288970 Niveispirillum 0 2 genus 1499 1 1543704 29 1612173 1470 species 1 0 Niveispirillum cyanobacteriorum Pararhodospirillum 0 2 1 731 genus 1612157 18 Pararhodospirillum photometricum 0 1 713 species 1084 25 168934 2545 genus 1 0 Thalassospira 3 Thalassospira xiamenensis 0 1 species 1132 220697 2048283 0 1 Thalassospira sp. CSC3H3 species 1388 0 Rhodospirillum 3 1 genus 3091 1081 43 1085 1 0 Rhodospirillum rubrum 1150 species 0 Rhodospirillum centenum 1 species 1898 34018 1618 genus 1 0 Tistrella 2 79 171436 171437 0 Tistrella mobilis 1 1539 species 1 10790 genus 0 5 Azospirillum 214 191 193 0 1 Azospirillum lipoferum species 3673 528244 2324 species Azospirillum thiophilum 0 1 1226968 0 Azospirillum humicireducens 1 1098 species 192 0 Azospirillum brasilense 1 3481 species 1263978 1 0 genus 837 Candidatus Endolissoclinum faulkneri 0 1 837 species 1263979 1 421 genus 2 0 Haematospirillum 1 1804663 1549855 species 420 0 1 Haematospirillum jordaniae family 23882 1 35 0 Acetobacteraceae 407 433 Neoasaia 0 2 genus 512 1 320496 5 320497 1 0 Neoasaia chiangmaiensis 507 species Acidiphilium 0 3 1 1387 genus 522 75 62140 1 0 Acidiphilium multivorum 678 species 524 0 Acidiphilium cryptum 1 species 634 8 0 Acetobacter 7188 genus 1 434 170 1633874 1 0 Acetobacter oryzifermentans 398 species species 1122 1 0 Acetobacter tropicalis 104102 446692 1 0 Acetobacter senegalensis 1062 species 2321 species 0 Acetobacter pasteurianus 1 438 65959 0 1 Acetobacter pomorum species 653 1 0 Acetobacter persici 715 species 1076596 0 1 747 subgenus 151157 species 747 1 0 Acetobacter aceti 435 74 441 1 2523 genus 0 3 Gluconobacter 0 Gluconobacter albidus 1 species 805 318683 442 1644 species Gluconobacter oxydans 0 1 707 genus 1 2 0 Asaia 1 91914 91915 706 species 0 1 Asaia bogorensis 523 genus 1 0 2 Kozakia 8 153497 515 species 0 Kozakia baliensis 1 153496 1 1602345 646 genus 1 2 0 Parasaccharibacter 1510841 0 Parasaccharibacter apium 1 species 645 1 4222 genus 0 5 Komagataeibacter 161 1434011 0 Komagataeibacter nataicola 1 species 974 265960 1897 species 1 0 Komagataeibacter xylinus 28448 0 Komagataeibacter medellinensis 1 species 664 1177712 Komagataeibacter europaeus 0 1 species 526 33995 1156 genus 1 Gluconacetobacter 0 2 9 89583 1147 species 1 0 Gluconacetobacter diazotrophicus 33996 1 2874 genus 3 0 Roseomonas 97 125216 0 1 Roseomonas gilardii species 1369 257708 2617492 no rank 1408 1 0 species 1408 0 Roseomonas sp. FDAARGOS_362 1 2018065 364409 22 Granulibacter 0 2 1 genus 1737 1 0 Granulibacter bethesdensis species 1715 364410 255473 1 Parvularculales 0 4 1 order 170 12 255474 169 family 1 Parvularculaceae 0 3 0 2 Parvularcula 1 157 genus 208215 1 208216 1 0 Parvularcula bermudensis 156 species 204457 416 0 82 Sphingomonadales 53296 order 1 667 41297 1 41385 family 0 59 Sphingomonadaceae genus 622 1 0 2685927 1921510 species 622 Sphingomonas sp. JJ-A5 0 1 10 0 Sphingopyxis 6088 genus 1 165697 168 267128 637 species 0 Sphingopyxis granuli 1 33052 0 Sphingopyxis terrae 1 species 524 2614943 0 4 no rank 2358 Sphingopyxis sp. 113P3 0 1 species 415 292913 1 0 Sphingopyxis sp. MG species 564 1866325 562 species Sphingopyxis sp. LPB0140 0 1 1913578 species 817 1 0 Sphingopyxis sp. QXT-31 1357916 Sphingopyxis alaskensis 0 1 species 629 117207 0 Sphingopyxis fribergensis 1 species 522 1515612 33050 1250 species Sphingopyxis macrogoltabida 0 1 42 165696 1 genus 3731 Novosphingobium 0 5 species 739 1 0 Novosphingobium aromaticivorans 48935 1109 species 0 1 Novosphingobium resinovorum 158500 1 0 no rank 888 2644732 888 species 0 Novosphingobium sp. PP1Y 1 702113 205844 0 Novosphingobium pentaromativorans 1 953 species 2709685 495 genus 0 1 495 species 0 1 Sphingorhabdus flavimaris 266812 329 13687 12369 genus 1 Sphingomonas 0 15 152682 849 species Sphingomonas melonis 0 1 765 species 0 Sphingomonas taxi 1 1549858 1609977 1 0 Sphingomonas hengshuiensis 666 species Sphingomonas sanxanigenens 0 1 species 882 397260 1560345 Sphingomonas panacis 0 1 726 species 93064 796 species 0 1 Sphingomonas koreensis 0 6 no rank 5311 196159 1327635 0 1 Sphingomonas sp. Cra20 758 species 843 species 0 Sphingomonas sp. NIC1 1 1961362 species 1072 0 1 Sphingomonas sp. LK11 1390395 1030157 0 Sphingomonas sp. KC8 1 species 833 784 species Sphingomonas sp. LM7 0 1 1938607 745310 0 Sphingomonas sp. MM-1 1 species 1021 Sphingomonas wittichii 0 2 2045 species 1 160791 1003 1 0 Sphingomonas sp. DC-6 strain 1042 1283312 150203 7 0 2 Blastomonas 1 genus 654 no rank 647 1 0 2626550 1842535 1 0 Blastomonas sp. RAC04 species 647 Zymomonas 0 2 genus 2164 1 541 137 542 species 2027 0 1 Zymomonas mobilis 57 72173 912 genus 1 2 0 Citromicrobium 1 0 no rank 855 2630544 1634516 855 species 1 0 Citromicrobium sp. JL477 240 165695 11457 genus 1 15 0 Sphingobium species 1018 Sphingobium chlorophenolicum 0 1 46429 1332080 Sphingobium baderi 0 1 1072 species 790 species 0 Sphingobium japonicum 1 332056 332055 0 1 Sphingobium indicum 856 species species 781 1 0 Sphingobium hydrophobicum 1673076 6 0 no rank 4355 2611147 1843368 species 646 0 1 Sphingobium sp. RAC03 1855519 0 Sphingobium sp. EP60837 1 495 species 484429 1 0 Sphingobium sp. YBL2 species 906 0 Sphingobium sp. MI1205 1 species 658 407020 627192 0 Sphingobium sp. SYK-6 1 871 species 0 1 Sphingobium sp. TKS species 779 1315974 120107 751 species 0 1 Sphingobium cloacae 13690 0 1 Sphingobium yanoikuyae 972 species 76947 622 species 1 0 Sphingobium herbicidovorans 0 Sphingorhabdus 3 genus 1374 1 1434046 30 no rank 1344 0 2 2614947 Sphingorhabdus sp. M41 0 1 species 574 1806885 2077182 770 species 0 Sphingorhabdus sp. YGSMI21 1 1 852 genus 0 Rhizorhabdus 2 7 1649486 1850238 0 Rhizorhabdus dicambivorans 1 species 845 0 Erythrobacteraceae 22 11495 family 1 335929 297 56 1295327 genus 1657 1 3 0 Croceicoccus 450378 0 Croceicoccus marinus 1 820 species 1348774 species 781 1 0 Croceicoccus naphthovorans 2800788 no rank 2999 0 6 1111 45 3 0 Porphyrobacter 1 genus 1285 2683265 0 2 no rank 1240 0 1 Porphyrobacter HT-58-2 733 species 2023229 1 0 Porphyrobacter sp. LM 6 507 species 1896196 68 1041 genus 1714 1 0 3 Erythrobacter 1112 1 0 Porphyrobacter neustonensis 665 species 0 Erythrobacter litoralis 1 species 981 39960 498 genus 0 1 2800685 498 species Altererythrobacter marensis 0 1 543877 1987 genus 1 4 0 Altererythrobacter 85 361177 Altererythrobacter ishigakiensis 0 1 583 species 476157 species 621 0 1 Altererythrobacter epoxidivorans 361183 species 698 0 1 Altererythrobacter atlanticus 1267766 2800686 genus 1008 0 2 542 species Altererythrobacter dongtanensis 0 1 692370 1982042 0 1 Altererythrobacter mangrovi 466 species 1045 genus 2 0 1855416 266951 0 Erythrobacter seohaensis 1 species 451 594 species 0 Erythrobacter flavus 1 192812 2800682 0 1 genus 781 781 species Altererythrobacter namhicola 0 1 645517 0 2 1223 genus 2800681 448 species 0 Erythrobacter atlanticus 1 1648404 502682 species 775 0 1 Erythrobacter gangjinensis order 628 0 2 2800059 2800061 family 628 2 0 74317 9 Maricaulis 0 2 genus 628 1 Maricaulis maris 0 1 619 species 74318 8 0 Pelagibacterales 1 order 3144 54526 3 2045213 genus 494 0 1 494 species 0 1 Candidatus Fonsibacter ubiquis 1925548 6 1655514 2647 family 1 0 Pelagibacteraceae 6 1655516 no rank 1373 2 0 alpha proteobacterium HIMB59 0 1 species 831 744985 859653 species 542 0 1 alpha proteobacterium HIMB5 3 0 Candidatus Pelagibacter genus 1268 1 198251 1 species 675 0 Candidatus Pelagibacter ubique 1 198252 1 0 no rank 592 2647897 1002672 1 0 Candidatus Pelagibacter sp. IMCC9063 species 592 17444 order 1 52 0 Rickettsiales 37 766 1 5936 family Anaplasmataceae 0 22 3 942 tribe 2525 8 0 952 59 953 1 genus 2525 8 0 Wolbachia 7 0 no rank 2466 2640676 100901 species 457 1 0 Wolbachia endosymbiont of Onchocerca ochengi 163164 Wolbachia endosymbiont of Drosophila melanogaster 0 1 species 225 1 0 Wolbachia endosymbiont of Onchocerca volvulus species 177 77551 species 136 0 Wolbachia endosymbiont of Cimex lectularius 1 246273 77038 1 0 Wolbachia endosymbiont of Drosophila simulans species 1034 192 species 0 Wolbachia endosymbiont of Brugia malayi 1 80849 species 245 1 0 Wolbachia sp. wRi 66084 943 7 6 0 Ehrlichia 2585 genus 1 106181 1 0 no rank 494 0 Ehrlichia sp. HF 1 species 494 391036 4 0 2084 species group 106178 1 0 Ehrlichia ruminantium species 882 779 species 432 1 0 Ehrlichia muris 35795 427 species Ehrlichia chaffeensis 0 1 945 343 species 1 0 Ehrlichia canis 944 1 278 genus 4 0 Anaplasma 1 768 770 Anaplasma marginale 0 1 species 88 106179 1 0 108 species group 948 0 1 Anaplasma phagocytophilum species 108 769 species 81 1 0 Anaplasma centrale 33993 3 0 genus 545 951 Neorickettsia sennetsu 0 1 species 192 species 194 Neorickettsia helminthoeca 0 1 33994 species 159 0 Neorickettsia risticii 1 950 0 1 1438 no rank 1699067 1528098 0 Rickettsiales bacterium Ac37b 1 1438 species 0 26 Rickettsiaceae 1 9691 family 775 13 2115980 341 genus 0 1 2115978 species 341 0 Candidatus Phycorickettsia trachydisci 1 9337 tribe 24 0 33988 69474 1126 genus 0 1 0 1 Orientia tsutsugamushi species 1126 784 8211 genus 1 23 0 Rickettsia 897 780 0 2 1184 species group 114292 785 1 0 Rickettsia typhi 582 species 602 species 0 Rickettsia prowazekii 1 782 114295 1 0 532 no rank species 532 0 Rickettsia endosymbiont of Bemisia tabaci 1 337479 4565 species group 17 0 114277 35790 Rickettsia japonica 0 1 species 219 787 1034 species 0 1 Rickettsia australis 205 species Rickettsia parkeri 0 1 35792 783 164 species 0 1 Rickettsia rickettsii 1105106 25 species Rickettsia philipii 0 1 33991 Rickettsia montanensis 0 1 species 55 781 species 21 1 0 Rickettsia conorii 0 Rickettsia africae 1 species 241 35788 Rickettsia felis 0 1 species 568 42862 35791 species 94 1 0 Rickettsia massiliae 226665 199 species Rickettsia heilongjiangensis 0 1 species 264 Rickettsia rhipicephali 0 1 33992 33989 125 species 1 0 Rickettsia amblyommatis 109232 0 1 Rickettsia monacensis 278 species Rickettsia akari 0 1 species 470 786 0 1 Rickettsia peacockii species 353 47589 0 Rickettsia slovaca 1 250 species 35794 1129742 species group 1033 0 2 0 Rickettsia bellii 1 479 species 33990 554 species 1 0 Rickettsia canadensis 788 Candidatus Midichloriaceae 0 2 1 family 342 1328881 6 1 0 genus 336 411566 234827 336 species Candidatus Midichloria mitochondrii 0 1 0 8 4072 no rank 82117 1 genus 1039 2 0 Polymorphum 11 991903 991904 1028 species 0 1 Polymorphum gilvum 213485 3 0 2 Micavibrio 1 1043 genus 349221 0 1 Micavibrio aeruginosavorus 1040 species 62654 0 2 clade 989 767891 1 0 2 Candidatus Puniceispirillum genus 989 1 988 species 0 1 Candidatus Puniceispirillum marinum 767892 1 genus 1001 2 0 Phreatobacter 41 1632780 1868589 960 species 1 0 Phreatobacter sp. S-12 Holosporales 0 6 order 1187 1 1921002 6 family 409 0 1 44746 409 no rank 1 0 204454 86106 0 1 endosymbiont of Acanthamoeba sp. UWC8 409 species 552 family 1 0 Caedimonadaceae 2 1 2100208 1509243 genus 551 1 0 species 551 0 Candidatus Nucleicultrix amoebiphila 1 1509244 Candidatus Paracaedibacteraceae 0 2 1 220 family 1777752 2 1521255 218 genus 1 0 species 218 1 0 Candidatus Paracaedibacter acanthamoebae 91604 0 4 Magnetococcales 1 1345 order 1191478 12 0 3 Magnetococcaceae family 1333 1 1191479 1 1 1332 genus 0 Magnetococcus 2 2 162171 1124597 1330 species 1 0 Magnetococcus marinus 68525 226308 subphylum 198 0 0 70 Epsilonproteobacteria 1 class 102292 29547 453 4154 213849 99835 order 1 65 0 Campylobacterales 8371 family 1 14 0 Helicobacteraceae 11 72293 843 1 0 414 genus 414 species Wolinella succinogenes 0 1 844 12 0 Helicobacter 1 genus 7946 209 14 1 0 Helicobacter typhlonius species 852 76936 no rank 479 0 1 2593540 222136 1 0 Helicobacter sp. MIT 01-6242 species 479 212 species 209 Helicobacter acinonychis 0 1 138563 species 1118 Helicobacter cetorum 0 1 1591088 0 1 Helicobacter himalayensis 473 species 213 0 1 Helicobacter cinaedi species 223 210 0 Helicobacter pylori 1 2679 species 32025 702 species 0 1 Helicobacter hepaticus 1 0 Helicobacter mustelae 589 species 217 Helicobacter bilis 0 1 391 species 37372 Helicobacter felis 0 1 217 species 214 0 41 Campylobacteraceae 83314 family 1 72294 5435 Campylobacter 0 26 1 58057 genus 194 507 201 1 0 Campylobacter lari 4209 species 824 654 species 0 1 Campylobacter gracilis 76517 1151 species 1 0 Campylobacter hominis 75658 1 0 Campylobacter lanienae 1249 species 260714 0 Campylobacter insulaenigrae 1 1943 species species 1309 1 0 Campylobacter concisus 199 196 Campylobacter fetus 0 1 species 1855 0 Campylobacter cuniculorum 1 1310 species 374106 0 1 Campylobacter volucris species 893 1031542 no rank 4689 0 4 2593542 1321 species 0 Campylobacter sp. RM6137 1 1660073 Campylobacter sp. RM12175 0 1 species 746 1660076 1500960 0 Campylobacter sp. RM16704 1 species 1489 1660074 Campylobacter sp. RM8964 0 1 1133 species 293 species Campylobacter curvus 0 1 200 0 1 Campylobacter avium species 429 522485 471 species 0 1 Campylobacter helveticus 28898 1244531 0 1 Campylobacter iguaniorum species 738 Campylobacter subantarcticus 0 1 1617 species 497724 198 0 Campylobacter hyointestinalis 1 species 940 1965231 2792 species 1 0 Campylobacter pinnipediorum species 1216 1 0 Campylobacter peloridis 488546 206 0 Campylobacter sputorum 1 species 1832 9191 species 1 0 Campylobacter jejuni 197 827 1280 species Campylobacter ureolyticus 0 1 195 17489 species Campylobacter coli 0 1 57665 96 9 0 Sulfurospirillum 6919 genus 1 348 species 1 0 Sulfurospirillum halorespirans 194424 66821 0 1 Sulfurospirillum multivorans 349 species 0 Sulfurospirillum barnesii 1 865 species 44674 2618290 no rank 3848 3 0 1986224 1253 species 0 1 Sulfurospirillum sp. SL2-1 220622 986 species 0 1 Sulfurospirillum sp. JPD-1 1581011 0 1 Sulfurospirillum sp. UCH001 species 1609 65553 0 Sulfurospirillum deleyianum 1 species 855 366522 0 Sulfurospirillum cavolei 1 558 species 2321108 0 5 no rank 12903 3150 no rank 0 1 2321207 0 Arcobacter sp. L 1 3150 species 944547 2460 genus 1 0 2321187 1850254 2460 species 0 Arcobacter sp. LPB0137 1 0 3 Arcobacter genus 7293 1 28196 22 0 1 Arcobacter nitrofigilis 3657 species 28199 28197 1 0 Arcobacter butzleri 3614 species 2771472 family 1955 0 5 genus 524 1 0 Nitratifractor 2 2 269260 0 Nitratifractor salsuginis 1 species 522 269261 265570 17 0 3 Sulfurovum 1 1431 genus 206403 1 0 Sulfurovum lithotrophicum 711 species 0 1 703 no rank 2646778 387093 0 Sulfurovum sp. NBC37-1 1 species 703 family 2041 0 4 2771471 1 0 genus 328 286130 0 Sulfuricurvum kujiense 1 328 species 148813 3 0 Sulfurimonas genus 1713 1 202746 3 39766 1 0 Sulfurimonas denitrificans species 963 202747 Sulfurimonas autotrophica 0 1 species 747 235899 2004 order 4 0 2795691 family 795 1 0 269258 795 genus 0 1 no rank 795 1 0 2624044 387092 Nitratiruptor sp. SB155-2 0 1 795 species 1209 family 1 0 3 Nautiliaceae 1 224467 1 1208 genus 0 2 Nautilia 11 191291 1197 species 0 1 Nautilia profundicola 244787 class 124016 1 0 128 Deltaproteobacteria 331 28221 Desulfobacterales 0 19 order 12424 1 213118 98 55 213119 family 6399 1 0 9 Desulfobacteraceae 28222 1 0 1169 genus 28223 Desulfobacula toluolica 0 1 species 1169 2295 2 0 2 Desulfobacterium genus 1167 1 Desulfobacterium autotrophicum 0 1 1165 species 2296 0 2 Desulfatibacillum 1306 genus 1 218207 1 Desulfatibacillum alkenivorans 0 1 species 1305 259354 Desulfococcus 0 3 2702 genus 1 896 10 species 1428 1 0 Desulfococcus oleovorans 181663 897 species 1264 1 0 Desulfococcus multivorans 213121 13 Desulfobulbaceae 0 9 family 5927 1 2 0 Desulfotalea genus 1323 1 109168 1 1322 species 1 0 Desulfotalea psychrophila 84980 Desulfurivibrio 0 2 genus 1632 1 427922 14 427923 0 Desulfurivibrio alkaliphilus 1 species 1618 893 27 0 Desulfobulbus 2 1 2008 genus Desulfobulbus sp. ORNL 0 1 1981 species 1986146 2 53318 1 951 genus 2 0 Desulfocapsa 949 species 0 1 Desulfocapsa sulfexigens 65555 451 29 1 order 40947 0 38 Myxococcales 0 3 2175 suborder 224462 35 224464 family 2175 1 Kofleriaceae 0 3 162027 26 0 Haliangium 2 1 2140 genus species 2114 0 Haliangium ochraceum 1 80816 80812 0 8 suborder 6654 21 49 5346 family 1 Polyangiaceae 0 5 1 50 888 genus 1 Chondromyces 0 2 0 Chondromyces crocatus 1 species 887 52 8 39643 4437 genus 1 Sorangium 0 2 species 4429 0 1 Sorangium cellulosum 56 0 Sandaracinaceae 3 1 1308 family 1055686 5 24 1055688 1303 genus 1 2 0 Sandaracinus 927083 species 1279 1 0 Sandaracinus amylolyticus 26 0 31667 suborder 80811 31 116 0 9 Myxococcaceae family 15563 1 1 genus 4994 0 3 Corallococcus 99 83461 35 0 1 Myxococcus macrosporus 2267 species 184914 species 2628 1 0 Corallococcus coralloides Myxococcus 0 5 genus 10453 1 32 451 4056 species 1 0 Myxococcus fulvus 33 83455 Myxococcus stipitatus 0 1 species 1994 species 2050 0 1 Myxococcus hansupus 1297742 34 1 0 Myxococcus xanthus 1902 species 1 family 6454 Anaeromyxobacteraceae 0 5 43 1524215 Anaeromyxobacter 0 4 genus 6411 1 161492 127 species 3111 0 1 Anaeromyxobacter dehalogenans 161493 2620896 0 2 no rank 3173 species 1326 1 0 Anaeromyxobacter sp. Fw109-5 404589 species 1847 1 0 Anaeromyxobacter sp. K 447217 1524213 30 0 Vulgatibacteraceae 3 1 1106 family 1 genus 1076 0 2 Vulgatibacter 20 1524214 0 1 Vulgatibacter incomptus species 1056 1391653 214 39 8544 family 1 0 9 Archangiaceae 44 32 Melittangium 0 2 2168 genus 1 Melittangium boletus 0 1 2136 species 83453 Archangium 0 2 genus 2122 1 47 52 species 2070 0 Archangium gephyra 1 48 71 42 1 2236 genus 2 0 Cystobacter 0 1 Cystobacter fuscus species 2165 43 1 1804 genus 0 Stigmatella 2 5 40 41 species 1799 Stigmatella aurantiaca 0 1 37 453227 order 2035 1 0 Desulfarculales 4 family 1998 1 0 Desulfarculaceae 3 28 453228 453229 19 2 0 Desulfarculus 1970 genus 1 1 0 Desulfarculus baarsii 1951 species 453230 16 213113 2155 order 1 0 6 Desulfurellales 1 117942 2139 family 1 0 Desulfurellaceae 5 593 genus 1 2 0 Hippea 5 84404 84405 588 species 0 Hippea maritima 1 2 0 Desulfurella 1 genus 1545 33001 6 0 1 Desulfurella acetivorans species 1539 33002 32 213462 1 order 3370 0 10 Syntrophobacterales 213465 13 0 Syntrophobacteraceae 3 family 1017 1 Syntrophobacter 0 2 1 1004 genus 29526 1 0 Syntrophobacter fumaroxidans 1 species 1003 119484 family 2321 1 0 6 Syntrophaceae 6 213468 1 genus 790 2 0 Syntrophus 3 43773 316277 species 787 0 Syntrophus aciditrophicus 1 2 0 Desulfomonile 503 genus 1 2357 1 0 1 Desulfomonile tiedjei species 502 2358 60892 1022 genus 0 1 1022 species 1 0 Desulfobacca acetoxidans 60893 0 24 Desulfuromonadales 1 order 25263 69541 520 113 213422 family 16325 1 14 0 Geobacteraceae Geobacter 0 11 14547 genus 1 28231 255 1 0 Geobacter anodireducens species 1617 1340425 1203471 983 species 0 Geobacter daltonii 1 345632 0 Geobacter pickeringii 1 species 1253 972 species 1 0 Geobacter uraniireducens 351604 2627627 0 2 3894 no rank 443143 2335 species 1 0 Geobacter sp. M18 1559 species Geobacter sp. M21 0 1 443144 species 1235 1 0 Geobacter sulfurreducens 35554 28232 1170 species 1 0 Geobacter metallireducens 313985 1731 species 0 1 Geobacter lovleyi species 1437 0 Geobacter bemidjiensis 1 225194 Geoalkalibacter 0 2 1 1665 genus 392332 3 483547 species 1662 0 1 Geoalkalibacter subterraneus 214 213421 family 8418 1 0 Desulfuromonadaceae 9 0 5 Pelobacter 1 genus 5064 18 20 29543 0 Pelobacter propionicus 1 species 2080 29542 Pelobacter acetylenicus 0 1 1174 species Pelobacter carbinolicus 0 1 876 species 19 2620299 1 0 no rank 914 1842532 1 0 Pelobacter sp. SFB93 species 914 15 890 1 3140 genus 3 0 Desulfuromonas 1447 species Desulfuromonas soudanensis 0 1 1603606 0 1 1678 no rank 2614637 1678 species Desulfuromonas sp. DDH964 0 1 1823759 494 213115 1 order 37491 26 0 Desulfovibrionales Desulfohalobiaceae 0 3 family 544 1 213117 6 genus 538 1 Desulfohalobium 0 2 2 45662 536 species 0 Desulfohalobium retbaense 1 45663 249 194924 33118 family 1 18 0 Desulfovibrionaceae 22478 genus 1 0 9 Desulfovibrio 210 872 778 species Candidatus Desulfovibrio trichonymphae 0 1 1725232 1 0 Desulfovibrio piger species 4025 901 2593640 no rank 1541 1 0 1541 species 0 1 Desulfovibrio sp. G11 631220 Desulfovibrio fairfieldensis 0 1 species 2845 44742 184917 1 0 Desulfovibrio magneticus 2286 species 5355 species 1 0 Desulfovibrio vulgaris 881 58180 1275 species 0 Desulfovibrio alaskensis 1 species 4163 0 Desulfovibrio desulfuricans 1 876 12 41707 1 genus 1440 0 2 Lawsonia Lawsonia intracellularis 0 1 species 1428 29546 1 5270 genus 4 0 Pseudodesulfovibrio 93 2035811 0 1 Pseudodesulfovibrio profundus 951 species 57320 182210 0 Pseudodesulfovibrio aespoeensis 1 1620 species 1716143 2606 species Pseudodesulfovibrio indicus 0 1 2582840 1 0 genus 1936 1936 species 1 0 Desulfovibrio africanus 873 2794998 genus 1745 1 0 0 1 Desulfovibrio salexigens 1745 species 880 34 213116 3335 family 1 0 Desulfomicrobiaceae 4 898 16 0 3 Desulfomicrobium genus 3301 1 1526 species Desulfomicrobium orale 0 1 132132 Desulfomicrobium baculatum 0 1 species 1759 899 28216 744 0 Betaproteobacteria 348 1 class 329265 16310 order 1 Rhodocyclales 0 22 282 206389 1 family 11210 Zoogloeaceae 0 12 286 2008794 219 12960 genus 4619 1 5 0 Azoarcus Azoarcus olearius 0 1 1034 species 418699 Azoarcus sp. SY39 0 1 species 1047 2067960 2629479 2319 no rank 0 2 198107 species 1168 0 1 Azoarcus sp. CIB 748247 1 0 Azoarcus sp. KH32C species 1151 1 6305 genus 0 Thauera 6 140 33057 species 1186 1 0 Thauera humireducens 1134435 2609274 3163 no rank 0 2 Thauera sp. MZ1T 0 1 species 1433 85643 2005884 species 1730 1 0 Thauera sp. K11 species 869 Thauera chlorobenzoica 0 1 96773 Thauera aromatica 0 1 species 947 59405 93 75787 family 3862 1 6 0 Rhodocyclaceae 22 551759 genus 872 1 2 0 Aromatoleum 1 0 Aromatoleum aromaticum 850 species 551760 no rank 824 0 1 75788 824 species 0 1 Rhodocyclaceae bacterium 1898103 146937 40 Azospira 0 2 1 2073 genus species 2033 1 0 Azospira oryzae 146939 956 family 1 Azonexaceae 0 3 12 2008795 genus 944 1 2 0 Dechloromonas 8 73029 259537 species 936 1 0 Dechloromonas aromatica 1 28368 order 0 35 Neisseriales 352 206351 21 0 Neisseriaceae 1 family 15538 481 186 437 482 1 10287 genus 0 Neisseria 12 495 Neisseria elongata 0 1 species 617 species 860 0 Neisseria mucosa 1 488 species 2539 0 Neisseria meningitidis 1 487 species 703 0 Neisseria sicca 1 490 486 species 888 1 0 Neisseria lactamica 0 2 no rank 1702 2623750 Neisseria sp. KEM232 0 1 1163 species 655307 539 species 1 0 Neisseria sp. 10022 1853276 species 525 Neisseria zoodegmatis 0 1 326523 0 1 Neisseria weaveri species 566 28091 0 Neisseria sp. 10023 1 species 761 1853278 689 species 0 1 Neisseria gonorrhoeae 485 1 1009 genus 0 2 Eikenella 7 538 1002 species 1 0 Eikenella corrodens 539 1344 genus 1 Vitreoscilla 0 3 33 59 0 1 no rank 410 2627922 0 1 Vitreoscilla sp. C1 410 species 96942 63 1 0 Vitreoscilla filiformis species 901 421605 1033 no rank 0 1 0 Neisseriaceae bacterium DSM 100970 1 1033 species 2052837 71 genus 896 0 1 species 896 1 0 Simonsiella muelleri 72 1193515 genus 783 1 0 1196083 species 783 0 1 Snodgrassella alvi 161 1499392 12478 family 1 0 Chromobacteriaceae 13 168470 13 0 Laribacter 2 1 1374 genus Laribacter hongkongensis 0 1 1361 species 168471 90153 4 0 no rank 6557 148 535 6557 genus 1 0 4 Chromobacterium species 1644 Chromobacterium violaceum 0 1 536 2641838 2151 no rank 1 0 1 0 Chromobacterium sp. ATCC 53434 2151 species 2059672 1108595 0 1 Chromobacterium vaccinii species 2614 67 568394 1830 genus 1 0 2 Pseudogulbenkiania 0 1 no rank 1763 2642558 748280 species 1763 0 1 Pseudogulbenkiania sp. NH8B 1555 genus 1 2 0 Aquaspirillum 21 187 0 1 no rank 1534 2620219 0 Aquaspirillum sp. LM1 1 1534 species 1938604 Jeongeupia 0 2 1 genus 1001 885864 13 988 no rank 0 1 2619593 1906741 1 0 Jeongeupia sp. USM3 988 species 33809 1337 no rank 0 2 543913 270 species 0 1 beta proteobacterium CB Betaproteobacteria bacterium GR16-43 0 1 species 1067 1904640 4533 no rank 0 12 119066 1301080 genus 82 1 0 Candidatus Nasuia deltocephalinicola 0 1 species 82 1160784 genus 3205 1 6 0 Kinetoplastibacterium 14 33055 217 species 0 Candidatus Kinetoplastibacterium oncopeltii 1 994696 233181 species 525 1 0 Kinetoplastibacterium blastocrithidii 33056 Candidatus Kinetoplastibacterium crithidii 0 1 500 species 1 0 Candidatus Kinetoplastibacterium desouzaii species 1095 994692 994695 0 1 Candidatus Kinetoplastibacterium galatii 854 species Candidatus Accumulibacter 0 2 964 genus 1 327159 30 327160 species 934 1 0 Candidatus Accumulibacter phosphatis 0 1 18 genus 189384 0 1 Candidatus Tremblaya princeps 18 species 189385 1 264 genus 2 0 Candidatus Profftella 2 1381133 262 species 0 Candidatus Profftella armatura 1 669502 Burkholderiales 0 234 order 259984 1 80840 3138 Burkholderiaceae 0 84 1 93838 family 119060 806 476 106589 genus 14981 1 0 Cupriavidus 9 no rank 4259 0 2 2640874 Cupriavidus sp. USMAHM13 0 1 2077 species 1389192 0 Cupriavidus sp. USMAA2-4 1 2182 species 876364 248026 1 0 Cupriavidus pinatubonensis 1095 species 68895 0 1 Cupriavidus basilensis species 1308 82541 0 Cupriavidus gilardii 1 species 1213 species 2932 Cupriavidus necator 0 1 106590 species 2165 0 Cupriavidus sp. USMAA1020 1 367825 species 1533 0 1 Cupriavidus metallidurans 119219 Pandoraea 0 10 8009 genus 1 93217 160 0 1 Pandoraea faecigallinarum 800 species 656179 species 800 0 1 Pandoraea sputorum 93222 93218 species 777 0 Pandoraea apista 1 573737 969 species 0 1 Pandoraea oxalativorans 656178 834 species 1 0 Pandoraea vervacti species 783 1 0 Pandoraea thiooxydans 445709 93221 1 0 Pandoraea pulmonicola 914 species 0 1 Pandoraea norimbergensis species 941 93219 0 1 Pandoraea pnomenusa species 1031 93220 1 0 930 genus 1827195 758793 species 930 0 1 Burkholderia sp. RPE64 45528 genus 1 41 0 Burkholderia 2354 32008 7 0 species group 6217 111527 0 Burkholderia mallei 1 523 species 13373 460 species 0 Burkholderia sp. MSMB0852 1 1637841 1709 species 0 1 Burkholderia pseudomallei 28450 species 456 Burkholderia sp. MSMB617WGS 0 1 1637831 species 1472 Burkholderia thailandensis 0 1 57975 506 species 1 0 Burkholderia sp. MSMB0266 1637837 342113 species 1091 1 0 Burkholderia oklahomensis 41899 0 Burkholderia plantarii 1 species 1250 11 0 8130 no rank 2613784 species 1024 Burkholderia sp. YI23 0 1 1097668 1740162 0 1 Burkholderia sp. Bp5365 species 579 species 684 0 1 Burkholderia sp. KJ006 416344 0 1 Burkholderia sp. HB1 species 813 1678678 1795874 species 606 Burkholderia sp. PAMC 28687 0 1 1 0 Burkholderia sp. RPE67 species 1051 758796 1 0 Burkholderia sp. 2002721687 559 species 1468409 1795043 Burkholderia sp. PAMC 26561 0 1 561 species species 769 0 Burkholderia sp. CCGE1001 1 640510 1740163 1 0 Burkholderia sp. Bp7605 species 744 640512 740 species 1 0 Burkholderia sp. CCGE1003 337 0 1 Burkholderia glumae 2153 species species group 23075 0 19 87882 265293 936 species [Pseudomonas] mesoacidophila 0 1 437 species 0 Burkholderia pyrrocinia 1 60550 95486 0 Burkholderia cenocepacia 1 3555 species 1 0 Burkholderia stagnalis 830 species 1503054 695 species 1 0 Burkholderia diffusa 488732 152500 Burkholderia dolosa 0 1 634 species 488731 635 species 1 0 Burkholderia seminalis 0 Burkholderia vietnamiensis 1 1148 species 60552 482957 0 Burkholderia lata 1 species 1087 488729 0 Burkholderia metallica 1 species 571 2157 species 1 0 Burkholderia ubonensis 101571 Burkholderia multivorans 0 1 1897 species 87883 952 species 0 1 Burkholderia ambifaria 152480 488447 652 species 1 0 Burkholderia contaminans 1503055 species 502 0 1 Burkholderia territorii 292 3954 species 0 Burkholderia cepacia 1 1 0 Burkholderia pseudomultivorans 581 species 1207504 488446 Burkholderia latens 0 1 species 657 species 1195 Burkholderia stabilis 0 1 95485 28095 2349 species Burkholderia gladioli 0 1 0 1 genus 451 2571159 412963 451 species Paraburkholderia rhizoxinica 0 1 8 44013 1 genus 1272 0 4 Polynucleobacter 1 0 Polynucleobacter asymbioticus 564 species 576611 576610 0 Polynucleobacter necessarius 1 392 species species 308 1 0 Polynucleobacter duraquae 1835254 Paraburkholderia 0 12 genus 11335 1 1822464 225 75105 0 1 Paraburkholderia caribensis 1641 species 134537 0 1 Paraburkholderia fungorum 732 species 36873 Paraburkholderia xenovorans 0 1 1040 species Paraburkholderia aromaticivorans 0 1 1092 species 2026199 species 850 Paraburkholderia phenoliruptrix 0 1 252970 1 0 Paraburkholderia hospita species 993 169430 Paraburkholderia sprentiae 0 1 1021 species 948107 2615204 1 0 no rank 942 1926494 0 1 Paraburkholderia sp. SOS3 942 species 0 Paraburkholderia phymatum 1 species 1101 148447 311230 0 1 Paraburkholderia terrae 855 species 0 Paraburkholderia phytofirmans 1 species 843 261302 48736 275 0 Ralstonia 5 1 genus 10526 Ralstonia solanacearum 0 1 species 4794 305 105219 species 1735 1 0 Ralstonia mannitolilytica 190721 0 Ralstonia insidiosa 1 1342 species 329 0 Ralstonia pickettii 1 2380 species 224471 14599 no rank 17 0 2 0 Leptothrix genus 1558 1 88 32 34029 Leptothrix cholodnii 0 1 species 1526 32012 49 0 2 Thiomonas 1 1895 genus 1846 species 0 Thiomonas intermedia 1 926 99 212743 1 1501 genus Rhizobacter 0 2 1 0 Rhizobacter gummiphilus species 1402 946333 413882 0 1 [Polyangium] brachysporum species 1479 1568 genus 1 Mitsuaria 0 2 81 65047 no rank 1487 0 1 2648776 1 0 Mitsuaria sp. 7 species 1487 1658665 1 genus 1256 0 2 Methylibium 62 316612 105560 Methylibium petroleiphilum 0 1 species 1194 47 28067 1740 genus 1 Rubrivivax 0 2 28068 species 1693 0 Rubrivivax gelatinosus 1 46 93681 genus 2197 1 2 0 Roseateles 76731 0 1 Roseateles depolymerans 2151 species genus 1405 1 2 0 Paucibacter 93 318147 1 0 no rank 1312 2642959 0 1 Paucibacter sp. KCTC 42545 1312 species 1768242 75682 279 29 0 Oxalobacteraceae 33232 family 1 1 5105 genus 0 Collimonas 4 99 202907 279113 1592 species Collimonas pratensis 0 1 279058 1 0 Collimonas arenae species 1797 Collimonas fungivorans 0 1 1617 species 158899 191 149698 1 8735 genus Massilia 0 6 1141883 0 Massilia putida 1 species 1551 2045208 1326 species 0 1 Massilia sp. B2 2609279 2 0 no rank 3508 1 0 Massilia sp. NR 4-1 species 1861 1678028 1707785 1647 species 1 0 Massilia sp. WG5 2159 species 0 1 Massilia sp. ZMN-3 2072590 846 3 0 Oxalobacter 2 genus 2685 1 species 2682 1 0 Oxalobacter formigenes 847 1854 genus 1 Herminiimonas 0 3 11 303379 1809410 603 species 0 1 Herminiimonas arsenitoxidans species 1240 1 0 Herminiimonas arsenicoxydans 204773 272 963 genus 7290 1 0 Herbaspirillum 6 964 species 1888 1 0 Herbaspirillum seropedicae Herbaspirillum frisingense 0 1 1770 species 92645 341045 Herbaspirillum hiltneri 0 1 1065 species 0 Herbaspirillum rubrisubalbicans 1 1543 species 80842 2624150 1 0 no rank 752 0 Herbaspirillum sp. meg3 1 species 752 2025949 7284 genus 1 7 0 Janthinobacterium 70 29580 368607 1549 species 1 0 Janthinobacterium svalbardensis 2610881 4447 no rank 0 4 0 Janthinobacterium sp. Marseille 1 606 species 375286 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1 species 1264 1644131 species 1052 0 1 Janthinobacterium sp. B9-8 1236179 species 1525 0 1 Janthinobacterium sp. LM6 1938606 0 1 Janthinobacterium agaricidamnosum species 1218 55508 506 452 42 0 Alcaligenaceae 1 family 51190 90243 8 2 0 Oligella 482 genus 1 474 species 1 0 Oligella urethralis 90245 359336 19 2 0 Castellaniella 1 genus 1736 75697 1717 species 0 Castellaniella defragrans 1 genus 819 0 1 1472344 1472345 Basilea psittacipulmonis 0 1 species 819 27 507 genus 1997 1 Alcaligenes 0 2 511 0 Alcaligenes faecalis 1 1970 species 222 541 Achromobacter 0 6 1 17364 genus 2626865 no rank 1879 0 1 1 0 Achromobacter sp. AONIH1 species 1879 1758194 6785 species 1 0 Achromobacter xylosoxidans 85698 0 Achromobacter insolitus 1 species 1758 217204 217203 3141 species Achromobacter spanius 0 1 32002 0 1 Achromobacter denitrificans 3260 species 29574 1 0 3 Taylorella genus 1880 1 1 0 Taylorella equigenitalis species 1368 29575 84590 species 511 Taylorella asinigenitalis 0 1 1 0 genus 716 1100891 716 species Paenalcaligenes hominis 0 1 643674 Pusillimonas 0 2 1 703 genus 305976 1 2640016 702 no rank 0 1 1007105 1 0 Pusillimonas sp. T7-7 702 species 1 genus 1627 0 2 Orrella 32 1921582 1851544 1595 species 0 Orrella dioscoreae 1 664 517 genus 22032 1 0 17 Bordetella 123899 1 0 Bordetella trematum species 1327 species 1168 0 1 Bordetella flabilis 463014 518 Bordetella bronchiseptica 0 1 2670 species 35814 511 species Bordetella holmesii 0 1 species 1416 Bordetella hinzii 0 1 103855 species 1426 0 1 Bordetella genomosp. 6 463024 94624 Bordetella petrii 0 1 species 1223 1563 species 1 0 Bordetella parapertussis 519 species 1680 0 1 Bordetella genomosp. 8 1416806 1521 species 1 0 Bordetella genomosp. 13 463040 521 0 1 Bordetella avium 648 species 2630031 0 1 1231 no rank species 1231 1 0 Bordetella sp. H567 1697043 1416803 species 1050 0 1 Bordetella genomosp. 9 463025 1592 species 1 0 Bordetella bronchialis 1331258 0 Bordetella pseudohinzii 1 1220 species Bordetella pertussis 0 1 species 1122 520 0 Advenella 3 genus 1382 1 290425 33 0 Advenella mimigardefordensis 1 716 species 302406 310575 0 Advenella kashmirensis 1 species 633 80864 1131 0 Comamonadaceae 59 62363 family 1 Polaromonas 0 3 1 2326 genus 52972 11 216465 0 Polaromonas naphthalenivorans 1 species 1067 0 1 1248 no rank 2638319 Polaromonas sp. JS666 0 1 1248 species 296591 329 80865 genus 8659 1 0 Delftia 5 80866 1 0 Delftia acidovorans 1899 species 2613839 2 0 no rank 4121 1 0 Delftia sp. HK171 species 1966 1920191 1 0 Delftia sp. Cs1-4 species 2155 742013 180282 2310 species Delftia tsuruhatensis 0 1 238749 17 2 0 Diaphorobacter genus 1429 1 1546149 0 1 Diaphorobacter polyhydroxybutyrativorans species 1412 12916 489 0 Acidovorax 9 11043 genus 1 2684926 no rank 5503 0 4 358220 species 1653 0 1 Acidovorax sp. KKS102 species 1252 Acidovorax sp. T1 0 1 1858609 0 1 Acidovorax sp. RAC01 species 1336 1842533 species 1262 0 1 Acidovorax sp. JS42 232721 553814 1225 species Acidovorax sp. NA3 0 1 1366 species 0 Acidovorax avenae 1 80867 721785 0 1 Acidovorax ebreus 1252 species 80869 species 1208 Acidovorax citrulli 0 1 1705 genus 1 0 Alicycliphilus 2 10 201096 179636 species 1695 0 Alicycliphilus denitrificans 1 0 1 1274 genus 2678886 1 0 Melaminivora sp. SC2-7 species 1274 2116657 352450 8 0 Simplicispira 2 1 genus 1157 2109915 1149 species Simplicispira sp. SC1-8 0 1 genus 1246 1 2 0 Melaminivora 26 1649468 no rank 1220 0 1 2641902 2109913 Melaminivora sp. SC2-9 0 1 1220 species 47420 81 0 Hydrogenophaga 4 1 3746 genus 2610897 0 2 2737 no rank 1842537 Hydrogenophaga sp. RAC07 0 1 1178 species 795665 1559 species Hydrogenophaga sp. PBC 0 1 1763535 0 1 Hydrogenophaga crassostreae species 928 283 22 4 0 Comamonas 5243 genus 1 0 1 Comamonas kerstersii 1456 species 225992 285 Comamonas testosteroni 0 1 2469 species species 1296 Comamonas serinivorans 0 1 1082851 4 1436289 708 genus 1 0 2 Candidatus Symbiobacter 1436290 0 1 Candidatus Symbiobacter mobilis species 704 genus 3033 1 0 2 Ramlibacter 16 174951 species 3017 0 1 Ramlibacter tataouinensis 94132 665874 14 3 0 Limnohabitans 948 genus 1 2 0 934 no rank 2626134 species 676 0 1 Limnohabitans sp. 63ED37-2 1678128 1678129 species 258 Limnohabitans sp. 103DPR2 0 1 364316 12 0 Verminephrobacter 2 1 genus 979 0 1 Verminephrobacter eiseniae species 967 364317 0 2 1727 genus 2490452 1458425 1 0 Comamonadaceae bacterium A1 745 species 1458426 0 Comamonadaceae bacterium B1 1 982 species 0 5 Rhodoferax 1 genus 4727 28065 70 1484693 929 species 0 1 Rhodoferax saidenbachensis 1842727 0 Rhodoferax koreense 1 species 1586 192843 1 0 Rhodoferax ferrireducens species 1123 81479 1019 species 0 Rhodoferax antarcticus 1 1 8620 genus 0 5 Variovorax 219 34072 no rank 2872 0 2 663243 1795631 0 Variovorax sp. PAMC 28711 1 663 species 2209 species Variovorax sp. PMC12 0 1 2126319 Variovorax boronicumulans 0 1 1776 species 436515 species 3753 1 0 Variovorax paradoxus 34073 219181 20 Ottowia 0 3 genus 2662 1 2109914 0 1 Ottowia sp. KADR8-3 1397 species 2645081 1 0 1245 no rank 1 0 Ottowia sp. oral taxon 894 1245 species 1658672 80841 no rank 1624 0 2 1469502 581 species 0 1 Burkholderiales bacterium GJ-E10 species 1043 1 0 Burkholderiales bacterium YL45 1834205 32003 267 42 0 Nitrosomonadales 17989 order 1 37 206379 4508 family 1 12 0 Nitrosomonadaceae 8 914 3166 genus 1 0 Nitrosomonas 7 915 0 1 Nitrosomonas europaea species 817 Nitrosomonas eutropha 0 1 species 571 916 2609265 0 2 no rank 803 261292 species 339 0 Nitrosomonas sp. Is79A3 1 Nitrosomonas sp. AL212 0 1 464 species 153948 1 0 Nitrosomonas ureae 373 species 44577 44574 1 0 Nitrosomonas communis 594 species 2 35798 1 1305 genus 0 4 Nitrosospira 0 Nitrosospira briensis 1 species 445 35799 species 492 Nitrosospira lacus 0 1 1288494 0 Nitrosospira multiformis 1 species 366 1231 0 4 1314 family 2772226 935200 35 2 0 Sulfuricella 604 genus 1 0 Sulfuricella denitrificans 1 species 569 649841 genus 710 1 0 Sulfuriferula 2 2 1778653 no rank 708 1 0 2637784 1985873 species 708 0 Sulfuriferula sp. AH1 1 5 0 Sterolibacteriaceae family 2336 1 2008793 41 1054211 40 2 0 Sulfuritalea genus 1197 1 species 1157 0 1 Sulfuritalea hydrogenivorans 748811 1 genus 1098 Methyloversatilis 0 2 4 378210 no rank 1094 1 0 2639971 1094 species 1 0 Methyloversatilis sp. RAC08 1842540 6 2008790 780 family 1 Thiobacillaceae 0 3 genus 774 1 0 2 Thiobacillus 8 919 766 species 0 Thiobacillus denitrificans 1 36861 0 Gallionellaceae 5 family 1964 1 90627 57 13 314343 1 1072 genus Sideroxydans 0 2 species 1059 0 Sideroxydans lithotrophicus 1 63745 835 genus 1 Gallionella 0 2 14 96 1 0 Gallionella capsiferriformans species 821 370405 13 32011 1 6820 family Methylophilaceae 0 12 1626 genus 0 2 1679002 1581680 1 0 Candidatus Methylopumilus turicensis 387 species 1581557 0 Candidatus Methylopumilus planktonicus 1 1239 species 466 genus 1 0 16 2630143 no rank 466 0 1 466 species Methylophilus sp. TWE2 0 1 1662285 359407 16 Methylotenera 0 3 genus 586 1 359408 species 205 0 Methylotenera mobilis 1 species 365 0 1 Methylotenera versatilis 1055487 0 Methylovorus 3 1 3604 genus 81682 55 266009 species 1105 0 Methylovorus glucosotrophus 1 2444 no rank 1 0 2634027 887061 1 0 Methylovorus sp. MP688 species 2444 3 404 1 genus 525 Methylobacillus 0 2 0 1 Methylobacillus flagellatus species 522 405 1 1553900 1 class 5937 0 10 Oligoflexia 2024979 2 Bacteriovoracales 0 4 1 order 2738 263369 0 1 1681 family 146784 genus 1681 1 0 960 1681 species Bacteriovorax stolpii 0 1 family 1055 2 0 1652132 0 2 Halobacteriovorax 1 genus 1055 1652133 1 1 0 Halobacteriovorax marinus species 1054 97084 Bdellovibrionales 0 5 3198 order 1 213481 9 16 213483 1 3189 family 0 Bdellovibrionaceae 4 0 3 Bdellovibrio 3173 genus 1 958 9 453816 1 0 Bdellovibrio exovorus 645 species Bdellovibrio bacteriovorus 0 1 2519 species 959 1807140 class 1883 6 0 1 order 1883 0 6 Acidithiobacillales 43 225057 225058 9 5 0 Acidithiobacillaceae family 1840 1 119977 22 Acidithiobacillus 0 4 1 1831 genus 1 0 Acidithiobacillus caldus 603 species 33059 Acidithiobacillus ferrooxidans 0 1 619 species 920 160808 species 587 0 1 Acidithiobacillus ferrivorans 1990 phylum 0 5 200938 1 class 1990 5 0 Chrysiogenetes 17 118001 1973 order 1 Chrysiogenales 0 4 90 189769 4 189770 family 1883 1 3 0 Chrysiogenaceae 1 genus 1879 2 0 Desulfurispirillum 22 393029 936456 1857 species 0 1 Desulfurispirillum indicum 1783272 20787770 clade 0 1711 544448 11 0 Tenericutes 102 1 77556 phylum 2799557 2 0 2844 no rank 1912503 13 0 Candidatus Izimaplasma 2 1 genus 2844 2624196 no rank 2831 1 0 1541959 1 0 Candidatus Izimaplasma sp. HR1 2831 species 1 class 69166 Mollicutes 0 97 69 31969 1 26448 order 0 44 Mycoplasmatales 18 2085 2092 42 43 0 Mycoplasmataceae 1 family 26430 3 2129 genus 1573 1 Ureaplasma 0 3 species 795 0 1 Ureaplasma parvum 134821 0 Ureaplasma urealyticum 1 775 species 2130 106 2093 genus 16219 1 27 0 Mycoplasma 2097 0 1 Mycoplasma genitalium 394 species 2683645 1 0 660 no rank species 660 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 2096 881 species 1 0 Mycoplasma gallisepticum 0 Mycoplasma bovoculi 1 240 species 45362 2118 1 0 Mycoplasma mobile 903 species 0 1 Mycoplasma crocodyli species 725 50052 0 1 Mycoplasma canadense species 372 29554 1 0 Mycoplasma arthritidis species 257 2111 2099 546 species Mycoplasma hyopneumoniae 0 1 species 85 Mycoplasma haemofelis 0 1 29501 2104 73 species 1 0 Mycoplasma pneumoniae 86660 species 304 0 1 Mycoplasma dispar Mycoplasma flocculare 0 1 220 species 2128 984991 235 species 0 Mycoplasma parvum 1 0 1 Mycoplasma ovis 101 species 171632 122 species 1 0 Mycoplasma haemocanis 136241 65123 1 0 Mycoplasma wenyonii 188 species 0 1 Mycoplasma suis species 120 57372 2100 0 Mycoplasma hyorhinis 1 species 353 Mycoplasma putrefaciens 0 1 species 912 2123 584 species 1 0 Mycoplasma penetrans 28227 51365 1 0 Mycoplasma yeatsii species 681 2098 0 Mycoplasma hominis 1 species 1123 656088 6034 species group 3 0 species 1930 0 1 Mycoplasma capricolum 2095 2102 2791 species 0 Mycoplasma mycoides 1 Mycoplasma leachii 0 1 species 1313 2105 12 0 genus 8596 2767358 Mycoplasma bovirhinis 0 1 1022 species 29553 171284 0 Mycoplasma cynos 1 species 1081 2109 species 481 0 Mycoplasma synoviae 1 species 612 Mycoplasma pullorum 0 1 48003 785 species 0 1 Mycoplasma arginini 2094 2107 358 species 0 Mycoplasma pulmonis 1 28903 1 0 Mycoplasma bovis 1056 species 2115 923 species 0 1 Mycoplasma fermentans 1 0 Mycoplasma californicum 336 species 2113 29555 Mycoplasma canis 0 1 species 677 Mycoplasma agalactiae 0 1 species 649 2110 0 1 Mycoplasma bovigenitalium species 616 2112 26 186328 1 33259 order Entomoplasmatales 0 39 1 family 11571 14 0 Entomoplasmataceae 42 33925 46238 39 Entomoplasma 0 5 genus 4503 1 214888 species 1247 0 1 Entomoplasma luminosum 803 species 0 Entomoplasma freundtii 1 74700 0 1 Entomoplasma melaleucae species 994 81459 215578 species 1420 Entomoplasma somnilux 0 1 109 46239 7026 genus 1 0 Mesoplasma 8 1 0 Mesoplasma lactucae species 1592 138853 502 species 0 1 Mesoplasma tabanidae 219745 324078 species 441 0 Mesoplasma coleopterae 1 2459 species Mesoplasma florum 0 1 2151 431 species 1 0 Mesoplasma chauliocola 216427 0 1 Mesoplasma syrphidae 1044 species 225999 448 species Mesoplasma entomophilum 0 1 2149 Spiroplasmataceae 0 24 family 21662 1 2131 71 2132 293 0 Spiroplasma 23 1 21591 genus 1 0 Spiroplasma kunkelii 724 species 47834 2136 1 0 Spiroplasma monobiae species 614 2144 1305 species 0 Spiroplasma mirum 1 0 Spiroplasma syrphidicola 1 981 species 216945 216937 0 Spiroplasma floricola 1 species 2165 216935 0 1 Spiroplasma culicicola species 1288 216936 1 0 Spiroplasma diminutum 610 species 362837 0 Spiroplasma cantharicola 1 species 1507 1114980 Spiroplasma atrichopogonis 0 1 species 1319 1160 species 0 1 Spiroplasma turonicum 216946 2637901 2 0 1274 no rank 1914410 species 637 1 0 Spiroplasma sp. NBRC 100390 0 1 Spiroplasma sp. TU-14 637 species 1898044 2139 0 1 Spiroplasma clarkii 987 species species 810 0 1 Spiroplasma sabaudiense 216944 870 species 0 Spiroplasma chrysopicola 1 216933 646 species Spiroplasma citri 0 1 2133 2137 891 species 0 Spiroplasma apis 1 876 species 1 0 Spiroplasma litorale 216942 782 species 0 Spiroplasma helicoides 1 216938 Spiroplasma corruscae 0 1 species 927 216934 866 species 0 1 Spiroplasma eriocheiris 315358 2145 696 species Spiroplasma taiwanense 0 1 15 186329 1 9390 order 0 13 Acholeplasmatales 6 2146 9375 family 1 Acholeplasmataceae 0 12 86 2147 6591 genus 1 0 5 Acholeplasma species 1704 0 Acholeplasma oculi 1 35623 species 1316 0 Acholeplasma laidlawii 1 2148 species 2311 0 Acholeplasma palmae 1 38986 61635 1174 species 1 0 Acholeplasma brassicae 0 Candidatus Phytoplasma 6 1 2778 genus 33926 66 85630 species group 290 1 0 Candidatus Phytoplasma mali 0 1 290 species 37692 3 0 species group 1218 85620 229545 species 348 Aster yellows witches'-broom phytoplasma 0 1 species 447 0 Onion yellows phytoplasma 1 100379 423 species 0 1 Maize bushy stunt phytoplasma 202462 species group 1204 0 1 85632 59748 0 Candidatus Phytoplasma australiense 1 species 1204 no rank 5535 2 0 713063 0 Tenericutes bacterium MZ-XQ 1 species 2877 1911683 1911684 2658 species Tenericutes bacterium MO-XQ 0 1 5 0 phylum 662 67819 1663419 1 5 0 Fimbriimonadia 662 class 1 Fimbriimonadales 0 4 1 order 661 1663425 5 4 1663426 656 family 1 Fimbriimonadaceae 0 3 2 0 Fimbriimonas 1 genus 652 1005038 1 0 Fimbriimonas ginsengisoli 1 species 651 1005039 phylum 16951 44 0 200795 1 3509 class 0 11 Chloroflexia 30 32061 10 0 Chloroflexales order 3479 1 32064 11 1858 suborder 5 0 1508594 1106 3 0 5 Chloroflexaceae 1 family 1858 69 1107 1855 genus 1 0 Chloroflexus 4 152260 species 438 1 0 Chloroflexus aggregans 1108 674 Chloroflexus aurantiacus 0 2 species 1348 1 strain 674 0 1 Chloroflexus sp. Y-400-fl 480224 1508595 0 4 suborder 1610 1508635 12 4 0 Roseiflexaceae 1610 family 1 120961 15 0 3 Roseiflexus 1 genus 1598 1 0 725 no rank 2609473 species 725 1 0 Roseiflexus sp. RS-1 357808 858 species 0 Roseiflexus castenholzii 1 120962 1 1337 class 8 0 Thermomicrobia 17 189775 189776 5 Thermomicrobiales 0 3 1 261 order 189777 2 0 family 256 0 2 Thermomicrobium 1 256 genus 499 12 Thermomicrobium roseum 0 1 244 species 500 85000 4 0 subclass 1059 16 85001 1 order 1059 0 4 Sphaerobacterales suborder 1043 0 3 255728 8 85002 family 1043 1 0 Sphaerobacteraceae 3 25 2056 1035 genus 1 0 2 Sphaerobacter 1 0 Sphaerobacter thermophilus species 1010 2057 0 Caldilineae 5 1 1273 class 475962 7 order 1266 1 4 0 Caldilineales 8 475963 family 1258 1 0 Caldilineaceae 3 1 475964 0 2 Caldilinea 1257 genus 1 233191 14 1243 species 1 0 Caldilinea aerophila 133453 13 292625 class 3536 1 0 Anaerolineae 6 292629 6 5 0 Anaerolineales order 3523 1 0 4 Anaerolineaceae 3517 family 1 292628 13 genus 712 0 1 2019482 species 712 1 0 Brevefilum fermentans 1986204 233189 genus 1316 0 1 species 1316 0 1 Anaerolinea thermophila 167964 1 0 no rank 1476 1324991 0 1 Anaerolineaceae bacterium oral taxon 439 species 1476 1889813 301297 16 0 9 Dehalococcoidia 1 class 4928 1 order 3561 Dehalococcoidales 0 5 6 1202465 0 4 Dehalococcoidaceae family 3555 1 1202464 10 0 Dehalococcoides 3 1 3545 genus 61434 5 0 1 Dehalococcoides mccartyi 2939 species 61435 237581 601 no rank 1 0 1522671 0 1 Dehalococcoides sp. UCH007 species 601 0 Dehalogenimonas 3 1 genus 1351 670486 8 552810 471 species 0 1 Dehalogenimonas lykanthroporepellens 1839801 0 1 Dehalogenimonas formicexedens species 872 0 5 Ardenticatenia 2368 class 1 1382928 60 1382929 42 0 4 Ardenticatenales 1 order 2308 22 1382930 family 2266 1 0 3 Ardenticatenaceae 2 0 Candidatus Promineofilum 2244 genus 1 1988031 9 Candidatus Promineofilum breve 0 1 2235 species 1806508 phylum 26695 0 36 1297 188787 212 0 Deinococci 36 26695 class 1 2762275 3 0 order 711 0 Trueperaceae 3 family 711 1 332247 7 0 2 Truepera 1 704 genus 332248 9 332249 0 1 Truepera radiovictrix species 695 68933 99 0 Thermales 17 8875 order 1 89 188786 family 8776 1 Thermaceae 0 16 1 genus 772 0 2 Marinithermus 7 186191 186192 0 Marinithermus hydrothermalis 1 species 765 genus 1409 1 0 2 Oceanithermus 7 208447 Oceanithermus profundus 0 1 species 1402 187137 genus 1807 1 Meiothermus 0 3 20 65551 52022 670 species Meiothermus silvanus 0 1 1 0 Meiothermus ruber 1117 species 277 270 117 0 8 Thermus 1 genus 4699 56956 337 species 0 Thermus brockianus 1 Thermus oshimai 0 1 species 656 56957 37636 Thermus scotoductus 0 1 species 435 0 Thermus aquaticus 1 species 718 271 2619321 no rank 793 0 1 793 species 1 0 Thermus sp. CCB_US3_UF1 1111069 456163 0 1 Thermus parvatiensis species 456 0 1 Thermus thermophilus 1187 species 274 118964 164 Deinococcales 0 15 1 order 16897 66 183710 16733 family 1 0 14 Deinococcaceae 13 0 Deinococcus 16667 genus 1 1298 256 1 0 Deinococcus swuensis 1873 species 1182571 1768108 Deinococcus actinosclerus 0 1 species 1621 310783 Deinococcus deserti 0 1 species 1037 55148 1709 species 1 0 Deinococcus proteolyticus 894 species 1 0 Deinococcus geothermalis 68909 1006 species 1 0 Deinococcus puniceus 1182568 0 1 Deinococcus peraridilitoris 1001 species 432329 1 0 Deinococcus gobiensis species 1713 502394 species 1640 1 0 Deinococcus soli Cha et al. 2016 1309411 1 0 1370 no rank 2623546 species 1370 0 Deinococcus sp. NW-56 1 2080419 309887 1159 species 0 Deinococcus maricopensis 1 1388 species Deinococcus radiodurans 0 1 1299 0 Actinobacteria 650 1346976 phylum 1 201174 104 7 0 Acidimicrobiia 1 class 1013 84992 8 order 1005 1 6 0 Acidimicrobiales 44 84993 2 0 family 794 2448023 682522 10 0 2 Ilumatobacter 1 genus 794 species 784 0 Ilumatobacter coccineus 1 467094 Acidimicrobiaceae 0 3 1 167 family 84994 7 53634 1 0 Acidimicrobium 2 1 160 genus 53635 Acidimicrobium ferrooxidans 0 1 species 159 15 84995 1 1701 class 0 Rubrobacteria 6 52 84996 1686 order 1 0 Rubrobacterales 5 84997 6 0 Rubrobacteraceae 4 1634 family 1 60 42255 genus 1628 1 3 0 Rubrobacter 49319 0 Rubrobacter xylanophilus 1 1067 species Rubrobacter radiotolerans 0 1 species 501 42256 1760 8153 595 0 Actinobacteria 886422 class 1 2 85014 1220 order 1 4 0 Glycomycetales 31 85034 1218 family 1 Glycomycetaceae 0 3 9 283810 1 genus 1187 2 0 Stackebrandtia 0 Stackebrandtia nassauensis 1 1178 species 283811 1 order 19478 0 20 Micromonosporales 49 85008 0 Micromonosporaceae 19 1 19429 family 28056 258 1 4188 genus Micromonospora 0 4 85 1873 1003110 0 Verrucosispora maris 1 1181 species 2617518 1557 no rank 1 0 1557 species 1 0 Micromonospora sp. L5 648999 47850 1365 species 1 0 Micromonospora aurantiaca 673534 48 0 Plantactinospora 4 4104 genus 1 2631981 no rank 4056 0 3 2024580 0 1 Plantactinospora sp. KBS50 1389 species 2071627 1372 species Plantactinospora sp. BB1 0 1 2108470 1295 species 1 0 Plantactinospora sp. BC1 186 1865 genus 8443 1 Actinoplanes 0 6 1866 0 1 Actinoplanes missouriensis 1507 species 5060 no rank 3 0 2626549 0 Actinoplanes sp. SE50/110 1 1683 species 134676 1 0 Actinoplanes sp. N902-109 species 1694 649831 2033844 1683 species 0 1 Actinoplanes sp. SE50 196914 1690 species 1 0 Actinoplanes friuliensis 0 3 Salinispora 1 genus 2433 168694 21 168695 1071 species 0 Salinispora tropica 1 1341 species Salinispora arenicola 0 1 168697 3 genus 1 0 Verrucosispora 84593 446 no rank 1 0 52018 446 species 0 Actinobacteria bacterium IMCC26256 1 1650658 85010 101 0 42 Pseudonocardiales 36423 order 1 2070 575 Pseudonocardiaceae 0 41 1 36322 family 2 0 Saccharothrix 1 genus 1709 2071 4 103731 0 Saccharothrix espanaensis 1 1705 species 5 2029 genus 1498 1 0 2 Kibdelosporangium 1 0 Kibdelosporangium phytohabitans species 1493 860235 142577 17 0 2 Prauserella 1 675 genus 0 Prauserella marina 1 658 species 530584 1847 230 8 0 Pseudonocardia genus 7348 1 1186 species 0 Pseudonocardia dioxanivorans 1 240495 no rank 5932 0 6 2619320 1 0 Pseudonocardia sp. HH130629-09 species 818 1641402 species 1039 0 1 Pseudonocardia sp. HH130630-07 1690815 445576 1216 species 0 1 Pseudonocardia sp. AL041005-10 1011 species Pseudonocardia sp. EC080610-09 0 1 1688404 species 859 1 0 Pseudonocardia sp. EC080625-04 1096868 1096856 species 989 Pseudonocardia sp. EC080619-01 0 1 471 genus 1 Saccharomonospora 0 2 1 1851 species 470 1 0 Saccharomonospora viridis 1852 0 Alloactinosynnema 2 1212 genus 1 674734 9 1 0 no rank 1203 2636053 species 1203 0 1 Alloactinosynnema sp. L-07 1653480 genus 4143 1 0 3 Actinosynnema 106 40566 1962 species 0 Actinosynnema mirum 1 40567 2075 species 1 0 Actinosynnema pretiosum 42197 0 Kutzneria 2 genus 2390 1 43356 7 43357 Kutzneria albida 0 1 2383 species 3 165301 genus 1299 1 0 2 Lentzea 1296 species 1 0 Lentzea guizhouensis 1586287 198 1813 genus 8747 1 0 7 Amycolatopsis 2618356 2 0 no rank 2388 1896961 0 Amycolatopsis sp. AA4 1 species 1448 1911175 940 species 0 Amycolatopsis sp. BJA-103 1 1 0 Amycolatopsis orientalis species 2062 31958 1814 1 0 Amycolatopsis methanolica 1255 species species 1158 0 1 Amycolatopsis japonica 208439 species 1686 Amycolatopsis mediterranei 0 1 33910 1 4582 genus 6 0 Actinoalloteichus 114 65496 2 0 1813 no rank 2644606 2072503 790 species 1 0 Actinoalloteichus sp. AHMU CJ021 species 1023 0 Actinoalloteichus sp. GBA129-24 1 1612551 1612552 1 0 Actinoalloteichus sp. ADI127-7 992 species 1 0 Actinoalloteichus hoggarensis 958 species 1470176 1 0 Actinoalloteichus hymeniacidonis species 705 340345 9 1835 1 1673 genus 2 0 Saccharopolyspora 1836 species 1664 1 0 Saccharopolyspora erythraea 2037 19 0 19 Actinomycetales 1 order 20933 Actinomycetaceae 0 18 1 20914 family 2049 6882 0 1 479 genus 28263 0 Arcanobacterium haemolyticum 1 species 479 28264 0 1 genus 826 2529408 0 1 Actinomyces meyeri 826 species 52773 1654 142 Actinomyces 0 9 1 genus 7690 1852377 1307 species Actinomyces pacaensis 0 1 Actinomyces gaoshouyii 0 1 752 species 1960083 2609248 3082 no rank 0 3 1 0 Actinomyces sp. oral taxon 897 1057 species 2081702 712122 species 1278 1 0 Actinomyces sp. oral taxon 414 1851395 species 747 1 0 Actinomyces sp. Chiba101 0 Actinomyces radicidentis 1 1226 species 111015 1912795 species 315 0 Actinomyces sp. VUL4_3 1 544580 Actinomyces oris 0 1 species 866 genus 1214 1 0 2 Trueperella 2 1069494 1212 species 1 0 Trueperella pyogenes 1661 2050 44 0 Mobiluncus 2 1 3188 genus 2051 species 3144 1 0 Mobiluncus curtisii 1653174 2 0 Actinotignum 2 1 genus 635 species 633 Actinotignum schaalii 0 1 59505 16 0 Streptosporangiales order 11995 1 85012 73 3 0 Thermomonosporaceae 1 1897 family 2012 22 2019 86 0 2 Thermomonospora genus 1875 1 2020 0 Thermomonospora curvata 1 species 1789 71 83676 4687 family 1 0 7 Nocardiopsaceae 1 613 genus 0 2 Thermobifida 5 83677 species 608 Thermobifida fusca 0 1 2021 78 2013 1 4003 genus 0 4 Nocardiopsis 1 0 Nocardiopsis alba 984 species 53437 2014 1 0 Nocardiopsis dassonvillei species 1598 0 1 Nocardiopsis gilva species 1343 280236 75 2004 5338 family 1 0 5 Streptosporangiaceae 83681 25 Nonomuraea 0 2 genus 3295 1 no rank 3270 0 1 2593643 Nonomuraea sp. ATCC 55076 0 1 species 3270 1909395 2000 15 0 2 Streptosporangium 1 1968 genus 1953 species 1 0 Streptosporangium roseum 2001 2 622452 1293 order 1 4 0 Kineosporiales 35 83778 1291 family 1 0 Kineosporiaceae 3 33981 46 Kineococcus 0 2 genus 1256 1 131568 1210 species 0 Kineococcus radiotolerans 1 85004 326 Bifidobacteriales 0 26 438947 order 1 0 25 Bifidobacteriaceae 1 438621 family 31953 20999 1 2701 genus 1928 1 0 Gardnerella 2 2702 0 1 Gardnerella vaginalis 1927 species 4474 1678 413063 genus 1 0 19 Bifidobacterium 1 0 Bifidobacterium scardovii species 2670 158787 27997 species 0 1 Bifidobacterium breve 1685 1687 species 774 0 1 Bifidobacterium coryneforme 1683 5455 species 0 1 Bifidobacterium angulatum 216816 1 0 Bifidobacterium longum species 73097 0 Bifidobacterium indicum 1 861 species 1691 1684 species 1074 0 1 Bifidobacterium asteroides 35760 1821 species 0 Bifidobacterium choerinum 1 Bifidobacterium adolescentis 0 1 189442 species 1680 27159 species 0 1 Bifidobacterium pseudocatenulatum 28026 1694 2472 species Bifidobacterium pseudolongum 0 1 28025 1661 species 0 1 Bifidobacterium animalis 0 1 Bifidobacterium dentium species 2415 1689 33905 species 3613 Bifidobacterium thermophilum 0 1 10685 1686 24844 species 1 0 2 Bifidobacterium catenulatum 630129 Bifidobacterium kashiwanohense 0 1 subspecies 14159 638619 1 0 Bifidobacterium actinocoloniiforme species 950 1681 42284 species 0 Bifidobacterium bifidum 1 196082 1 0 2 Parascardovia 1 genus 1688 Parascardovia denticolens 0 1 1687 species 78258 196081 1 0 genus 943 943 species 0 Scardovia inopinata 1 78259 order 4201 1 Frankiales 0 7 6 85013 Frankiaceae 0 6 family 4195 1 74712 64 1 4131 genus 0 5 Frankia 92 1854 0 1 Frankia alni species 1007 1859 298654 1 0 Frankia inefficax species 1440 516 species Frankia casuarinae 0 1 106370 no rank 1076 1 0 2632575 species 1076 0 Frankia sp. EAN1pec 1 298653 4 1643684 order 1191 1 4 0 Nakamurellales 85031 20 Nakamurellaceae 0 3 family 1187 1 1167 genus 1 2 0 Nakamurella 13 53460 53461 species 1154 0 1 Nakamurella multipartita 85009 122 Propionibacteriales 0 33 1 order 22553 15278 family 1 Propionibacteriaceae 0 19 207 31957 6 1912215 1 genus 1742 0 2 Acidipropionibacterium 1748 0 Acidipropionibacterium acidipropionici 1 species 1736 3928 genus 1 0 3 Propionibacterium 29 1743 no rank 455 0 1 2608905 671223 species 455 0 1 Propionibacterium sp. oral taxon 193 1744 0 1 Propionibacterium freudenreichii species 3444 0 Microlunatus 2 genus 755 1 29404 5 29405 0 1 Microlunatus phosphovorus 750 species 0 5 Tessaracoccus 4134 genus 1 72763 51 1177 species Tessaracoccus aquimaris 0 1 1332264 2635419 958 no rank 1 0 1909732 0 1 Tessaracoccus sp. T2.5-30 species 958 399497 species 1041 0 Tessaracoccus flavescens 1 0 Tessaracoccus flavus 1 907 species 1610493 2519 genus 1 0 4 Cutibacterium 3 1912216 1 0 Cutibacterium acnes 658 species 1747 33011 1 0 Cutibacterium granulosum 567 species 33010 1291 species 1 0 Cutibacterium avidum 203133 1 0 genus 1257 2633994 no rank 1257 0 1 1871034 Propionimicrobium sp. Marseille-P3275 0 1 species 1257 2801844 genus 736 1 0 species 736 Pseudopropionibacterium propionicum 0 1 1750 7153 family 1 0 Nocardioidaceae 13 209 85015 5 2044 1024 genus 1 0 Pimelobacter 2 0 1 Pimelobacter simplex species 1019 2045 182639 30 2 0 Kribbella 1 1041 genus 0 Kribbella flavida 1 species 1011 182640 1 genus 2988 0 4 Nocardioides 81 1839 2045452 species 1084 0 Nocardioides sp. 78 1 450734 1 0 Nocardioides dokdonensis 861 species 2615069 962 no rank 0 1 species 962 0 1 Nocardioides sp. JS614 196162 952 genus 1 0 Aeromicrobium 2 17 2040 0 Aeromicrobium erythreum 1 935 species 2041 116071 46 2 0 Micropruina 939 genus 1 0 1 Micropruina glycogenica 893 species 75385 293 85011 1 104834 order 82 0 Streptomycetales family 104541 1 0 Streptomycetaceae 81 639 2062 5 0 Kitasatospora genus 6286 1 2063 68 species 1207 Kitasatospora albolonga 0 1 68173 1894 0 1 Kitasatospora aureofaciens species 1233 2066 Kitasatospora setae 0 1 species 1814 2633591 1964 no rank 0 1 2018025 1964 species 1 0 Kitasatospora sp. MMS16-BH015 1883 3493 0 75 Streptomyces genus 97616 1 species 1214 Streptomyces formicae 0 1 1616117 1984 species group 0 2 629295 1482558 0 1 species subgroup 950 950 species 0 Streptomyces globisporus 1 1908 1482596 species subgroup 1034 1 0 1911 0 1 Streptomyces griseus species 1034 0 Streptomyces griseochromogenes 1 1369 species 68214 Streptomyces albus 0 1 2347 species 1888 1 0 Streptomyces gilvosporeus species 1397 553510 1169025 775 species 1 0 Streptomyces pratensis 38300 0 1 Streptomyces pristinaespiralis 1234 species Streptomyces lavendulae 0 1 1133 species 1914 species 890 1 0 Streptomyces rubrolavendulae 285473 Streptomyces chartreusis 0 1 1267 species 1969 164348 species 1392 0 Streptomyces puniciscabiei 1 1038928 1 0 Streptomyces xinghaiensis species 1187 Streptomyces violaceusniger 0 1 species 1341 68280 2346 species 1 0 Streptomyces pactum 68249 1783515 Streptomyces sp. S10(2016) 0 1 1157 species 1437453 0 1 Streptomyces leeuwenhoekii species 1102 1317 species 1 0 Streptomyces alfalfae 1642299 Streptomyces avermitilis 0 1 species 1009 33903 146923 1 0 Streptomyces parvulus 1139 species 2049881 species 1188 0 Streptomyces sp. XZHG99 1 1196 species 0 Streptomyces autolyticus 1 75293 species group 2361 0 2 1477431 1902 0 1 Streptomyces coelicolor species 1311 42239 species 1050 Streptomyces sampsonii 0 1 species 3061 0 Streptomyces hygroscopicus 1 1912 Streptomyces noursei 0 1 species 1048 1971 1 0 Streptomyces malaysiensis species 1154 92644 0 Streptomyces glaucescens 1 1158 species 1907 species 2012 Streptomyces venezuelae 0 1 54571 193462 0 Streptomyces niveus 1 species 1134 1589 species Streptomyces albireticuli 0 1 1940 species 1362 1 0 Streptomyces scabiei 1930 0 24 27231 no rank 2593676 1265601 0 1 Streptomyces sp. PAMC 26508 species 943 2135430 species 1302 Streptomyces sp. P3 0 1 1725411 Streptomyces sp. CdTB01 0 1 species 1317 1495638 species 1384 0 1 Streptomyces sp. M56 1649184 921 species Streptomyces sp. CFMR 7 0 1 0 1 Streptomyces sp. MOE7 1147 species 1961713 species 1448 Streptomyces sp. SAT1 0 1 1849967 1561022 1237 species 0 Streptomyces sp. CCM_MD2014 1 1751294 1 0 Streptomyces sp. 4F 1111 species 1964449 1026 species 0 1 Streptomyces sp. 3211 465541 1 0 Streptomyces sp. Mg1 1131 species species 899 0 Streptomyces sp. SirexAA-E 1 862751 1262452 species 1405 Streptomyces sp. 769 0 1 0 Streptomyces sp. Sge12 1 species 959 1972846 1 0 Streptomyces sp. fd1-xmd 1144 species 1812480 444103 1202 species 0 1 Streptomyces sp. CNQ-509 956 species 0 Streptomyces sp. S8 1 1837283 Streptomyces sp. CLI2509 0 1 species 855 1984801 2094021 Streptomyces sp. WAC00288 0 1 species 757 1661694 species 995 1 0 Streptomyces sp. Tue 6075 1641 species 0 1 Streptomyces sp. RTd22 1841249 206662 1114 species 1 0 Streptomyces sp. FR-008 species 1295 1 0 Streptomyces sp. CMB-StM0423 2059884 species 1042 Streptomyces sp. TN58 0 1 234612 68570 1 0 Streptomyces albulus species 1319 species 3385 0 1 Streptomyces lydicus 47763 1889 species 1056 0 1 Streptomyces ambofaciens 1783 species Streptomyces bingchenggensis 0 1 379067 67267 1197 species 0 1 Streptomyces alboflavus 42684 1187 species 0 Streptomyces collinus 1 1130 species 0 Streptomyces clavuligerus 1 1901 68192 1156 species Streptomyces cyaneogriseus 0 1 894 species 1 0 Streptomyces pluripotens 1355015 1926 1206 species Streptomyces reticuli 0 1 1323 species 0 Streptomyces lincolnensis 1 1915 29303 species 1678 0 Streptomyces cattleya 1 1088 species Streptomyces violaceoruber 0 1 1935 68202 species 867 0 1 Streptomyces fulvissimus 362257 1 0 Streptomyces vietnamensis species 1403 Streptomyces lividans 0 1 1119 species 1916 408015 species 1388 1 0 Streptomyces xiamenensis 1 0 Streptomyces peucetius 850 species 1950 4 0 Catenulisporales 1 2290 order 414714 12 34 414877 family 2278 1 3 0 Catenulisporaceae 1 2244 genus Catenulispora 0 2 39 414878 0 1 Catenulispora acidiphila 2205 species 304895 1643682 17 8 0 Geodermatophilales 1 order 3705 0 7 Geodermatophilaceae family 3688 1 85030 124 5 1860 1164 genus 1 2 0 Geodermatophilus 1861 1159 species 1 0 Geodermatophilus obscurus 1486 genus 1 2 0 Modestobacter 23 88138 0 1 Modestobacter marinus species 1463 477641 1 38501 914 genus 1 0 2 Blastococcus 138336 species 913 Blastococcus saxobsidens 0 1 256 order 0 2 1643683 85032 4 Acidothermaceae 0 2 1 family 256 0 1 252 genus 28048 Acidothermus cellulolyticus 0 1 species 252 28049 85006 816 0 143 Micrococcales 1 85055 order 36 85016 family 3700 1 Cellulomonadaceae 0 6 1 genus 3664 0 5 Cellulomonas 76 1707 11 830 species 0 1 Cellulomonas gilvus 0 Cellulomonas fimi 1 species 1075 1708 2620175 1 0 639 no rank 2003551 0 Cellulomonas sp. PSBB021 1 species 639 1711 0 Cellulomonas flavigena 1 species 1044 49 no rank 0 1 577468 2038 0 1 49 genus 49 species 1 0 Tropheryma whipplei 2039 27 85021 1 family 3364 0 Intrasporangiaceae 9 1 1082 genus Arsenicicoccus 0 2 47 267408 2663846 1035 no rank 1 0 0 Arsenicicoccus sp. oral taxon 190 1 1035 species 1658671 53457 18 Janibacter 0 2 genus 828 1 species 810 1 0 Janibacter indicus 857417 2 0 Intrasporangium 1 genus 514 53357 5 53358 Intrasporangium calvum 0 1 species 509 913 genus 1 Serinicoccus 0 2 9 265976 904 species 0 1 Serinicoccus sp. JLT9 1758689 125316 family 767 2 0 84756 20 2 0 Beutenbergia genus 767 1 84757 747 species 0 Beutenbergia cavernae 1 85017 76 Promicromonosporaceae 0 9 family 4182 1 254250 28 0 3 Isoptericola 1547 genus 1 139208 0 Isoptericola variabilis 1 species 734 0 Isoptericola dokdonensis 1 785 species 372663 1 genus 1005 0 Xylanimonas 2 16 186188 species 989 1 0 Xylanimonas cellulosilytica 186189 3 0 Cellulosimicrobium 1 genus 1554 157920 32 0 1 Cellulosimicrobium cellulans 904 species 1710 0 1 618 no rank 2624466 0 Cellulosimicrobium sp. TH-20 1 species 618 1980001 2 85022 1 family 297 0 Jonesiaceae 3 43673 4 Jonesia 0 2 295 genus 1 species 291 1 0 Jonesia denitrificans 43674 14 145360 1 1014 family Sanguibacteraceae 0 3 1000 genus 1 0 2 Sanguibacter 21 60919 60920 species 979 0 Sanguibacter keddieii 1 1 family 1312 Brevibacteriaceae 0 3 12 85019 0 2 Brevibacterium 1300 genus 1 1696 7 1703 1293 species 0 1 Brevibacterium linens 0 Micrococcaceae 40 1 35763 family 1268 3271 1 genus 2475 4 0 Kocuria 58 57493 72000 Kocuria rhizophila 0 1 species 964 446860 Kocuria flava 0 1 species 780 71999 0 Kocuria palustris 1 673 species 0 2 Neomicrococcus 1 genus 941 1868332 34 556325 907 species 0 1 Neomicrococcus aestuarii genus 1504 1 0 2 Glutamicibacter 21 1742989 0 1 Glutamicibacter arilaitensis 1483 species 256701 1269 10 0 2 Micrococcus 1 1211 genus species 1201 0 1 Micrococcus luteus 1270 2078575 genus 816 1 0 816 species 0 Arthrobacter sp. IHBB 11108 1 1618207 0 Renibacterium 2 1 genus 254 1645 1 1646 253 species 0 Renibacterium salmoninarum 1 1 668 genus Paenarthrobacter 0 2 14 1742992 43663 species 654 0 Paenarthrobacter aurescens 1 4 0 Pseudarthrobacter 1 genus 3361 1742993 13 361575 1 0 Pseudarthrobacter phenanthrenivorans species 989 85085 Pseudarthrobacter chlorophenolicus 0 1 1003 species 0 1 Pseudarthrobacter sulfonivorans species 1356 121292 596707 3 Sinomonas 0 2 1 genus 810 0 1 Sinomonas atrocyanea species 807 37927 16260 genus 1 Arthrobacter 0 15 391 1663 235627 12476 no rank 0 12 1 0 Arthrobacter sp. QXT-31 1021 species 1357915 1704044 species 1249 0 1 Arthrobacter sp. ERGS1:01 947 species Arthrobacter sp. YN 0 1 2020486 0 Arthrobacter sp. ZXY-2 1 712 species 1806905 1849032 0 Arthrobacter sp. U41 1 species 1000 824 species 0 Arthrobacter sp. ATCC 21022 1 1771959 Arthrobacter sp. PAMC 25486 0 1 985 species 1494608 0 1 Arthrobacter sp. PGP41 855 species 2079227 1118963 0 1 Arthrobacter sp. Rue61a species 595 0 1 Arthrobacter sp. YC-RL1 1490 species 1652545 1690248 1639 species 1 0 Arthrobacter sp. LS16 290399 0 Arthrobacter sp. FB24 1 species 1159 656366 species 1956 1 0 Arthrobacter alpinus species 1437 Arthrobacter crystallopoietes 0 1 37928 4192 genus 1 0 Rothia 3 8 32207 2047 species 567 0 Rothia dentocariosa 1 0 1 Rothia mucilaginosa 3617 species 43675 61 85020 1 6388 family 11 0 Dermabacteraceae 472568 4 0 Devriesea 2 429 genus 1 1 0 Devriesea agamarum species 425 472569 36739 4 Dermabacter 0 2 genus 407 1 1630135 species 403 0 1 Dermabacter vaginalis 43668 78 6 0 Brachybacterium 1 5491 genus 912 species Brachybacterium sp. VR2415 0 1 2017485 43669 1 0 Brachybacterium faecium 1554 species 2623841 1 0 no rank 955 Brachybacterium sp. P6-10-X1 0 1 species 955 1903186 1331682 species 899 1 0 Brachybacterium ginsengisoli 2017484 species 1093 Brachybacterium sp. VM2412 0 1 85023 244 0 Microbacteriaceae 45 family 24103 1 2 447237 688 genus 1 0 2 Frondihabitans 2626248 1 0 no rank 686 1795630 Frondihabitans sp. PAMC 28766 0 1 686 species genus 161 1 Aurantimicrobium 0 2 1 1705353 708131 species 160 1 0 Aurantimicrobium minutum 0 14 Microbacterium 9073 genus 1 33882 164 0 1 Microbacterium chocolatum species 406 84292 162426 1 0 Microbacterium hominis 835 species 300019 0 Microbacterium paludicola 1 666 species 0 8 no rank 5483 2609290 581 species Microbacterium sp. CGR1 0 1 1696072 Microbacterium sp. No. 7 0 1 species 853 1714373 1795053 Microbacterium sp. PAMC 28756 0 1 species 729 species 750 1 0 Microbacterium sp. BH-3-3-3 1906742 367477 0 1 Microbacterium sp. XT11 species 711 species 517 0 1 Microbacterium sp. TPU 3598 1938334 2103230 species 690 Microbacterium sp. str. 'China' 0 1 1916917 652 species 0 Microbacterium sp. 1.5R 1 947 species Microbacterium aurum 0 1 36805 species 572 1 0 Microbacterium testaceum 2033 1 genus 3354 6 0 Clavibacter 188 1573 0 Clavibacter michiganensis 5 species 3166 1 28447 709 33014 557 subspecies Clavibacter insidiosus 0 1 0 1 Clavibacter sepedonicus 623 subspecies 31964 675 subspecies 1 0 Clavibacter capsici 1874630 Clavibacter nebraskensis 0 1 602 subspecies 31963 1759331 765 genus 1 0 0 Cnuibacter physcomitrellae 1 765 species 1619308 1655488 no rank 315 0 2 1655489 2 0 315 clade 2 0 315 genus 529883 species 120 Rhodoluna lacicola 0 1 529884 195 species Candidatus Rhodoluna planktonica 0 1 535712 Cryobacterium 0 3 1 2153 genus 69578 20 1 0 1240 no rank 2649013 1978566 1240 species 0 1 Cryobacterium sp. LW097 893 species Cryobacterium arcticum 0 1 670052 0 4 Curtobacterium 2129 genus 1 2034 27 69373 1 0 Curtobacterium pusillum species 714 257496 0 2 1388 no rank 669 species 1 0 Curtobacterium sp. BH-2-1-1 1905847 Curtobacterium sp. MR_MD2014 0 1 719 species 1561023 15 110932 1 1531 genus 0 2 Leifsonia species 1516 0 Leifsonia xyli 1 1575 518733 0 1 868 genus species 868 Microterricola viridarii 0 1 412690 33877 0 1 genus 1118 453304 0 1 Agromyces aureus 1118 species genus 662 1 0 2 Microcella 3 337004 0 1 Microcella alkaliphila species 659 279828 1434032 0 1 166 genus 1159327 166 species 0 1 Pontimonas salivibrio 0 3 Rathayibacter genus 876 1 33886 13 33888 1 0 Rathayibacter tritici 528 species Rathayibacter toxicus 0 1 species 335 145458 8 85018 572 family 1 3 0 Dermatophilaceae 1862 1 2 0 Dermatophilus 564 genus 1 1863 species 563 0 Dermatophilus congolensis 1 0 7 Dermacoccaceae 1 2728 family 145357 55 6 745364 genus 913 1 Luteipulveratus 0 2 571913 1 0 Luteipulveratus mongoliensis 907 species genus 807 1 2 0 Dermacoccus 1 57495 1274 1 0 Dermacoccus nishinomiyaensis 806 species 57499 33 2 0 Kytococcus 1 953 genus 920 species 0 Kytococcus sedentarius 1 1276 1 order 117728 0 162 Corynebacteriales 817 85007 4 0 Dietziaceae 1348 family 1 85029 15 1 1333 genus 0 3 Dietzia 17 37914 499555 571 species Dietzia timorensis 0 1 745 no rank 1 0 2617939 species 745 0 1 Dietzia sp. oral taxon 368 712270 697024 2 0 546 no rank 1 546 genus 0 2 Lawsonella 4 1847725 1528099 species 542 0 Lawsonella clevelandensis 1 579 family 1 3 0 Segniliparaceae 8 316606 286801 20 2 0 Segniliparus genus 571 1 1 0 Segniliparus rotundus species 551 286802 1762 173 0 Mycobacteriaceae 56 1 39380 family 5 0 3331 genus 670516 species 1288 1 0 Mycobacterium abscessus 36809 1 0 Mycobacterium saopaulense species 513 1578165 1774 Mycobacterium chelonae 0 1 species 377 556 species 0 1 Mycobacterium stephanolepidis 1520670 597 species 0 Mycobacterium immunogenum 1 83262 1 genus 22334 0 34 Mycobacterium 1729 1763 77643 0 4 species group 1566 1 1103 species 3 0 Mycobacterium tuberculosis 386 1773 1765 358 biotype 0 1 Mycobacterium bovis 359 biotype Mycobacterium africanum 0 1 33894 0 1 Mycobacterium canettii species 463 78331 species 632 1 0 Mycobacterium ulcerans 1809 120793 4672 species group 0 8 Mycobacterium paraintracellulare 0 1 species 207 1138383 Mycobacterium avium 0 1 species 1544 1764 1767 294 Mycobacterium intracellulare 0 4 species 1213 1 0 Mycobacterium chimaera 1 528 subspecies 222805 subspecies 156 0 1 Mycobacterium indicus pranii 35617 1203599 subspecies 235 1 0 Mycobacterium yongonense 0 1 Mycobacterium marseillense 776 species 701042 339268 species 932 0 Mycobacterium colombiense 1 2642494 13 0 no rank 9013 1561223 species 451 0 1 Mycobacterium sp. QIA-37 1 0 Mycobacterium sp. WY10 species 870 1920667 643 species 1 0 Mycobacterium sp. KMS 189918 164756 624 species Mycobacterium sp. MCS 0 1 1570328 Mycobacterium sp. NRRL B-3805 0 1 species 703 1682113 693 species 1 0 Mycobacterium sp. YC-RL4 164757 Mycobacterium sp. JLS 0 1 628 species Mycobacterium sp. MOTT36Y 0 1 193 species 1168287 2051552 species 755 1 0 Mycobacterium sp. PYR15 0 Mycobacterium sp. djl-10 1 1138 species 1879023 0 Mycobacterium sp. EPa45 1 875 species 1545728 1273687 Mycobacterium sp. VKM Ac-1817D 0 1 656 species 212767 Mycobacterium sp. JS623 0 1 784 species 1768 1 0 Mycobacterium kansasii 1230 species 378 species 1 0 Mycobacterium haemophilum 29311 482462 1001 species Mycobacterium dioxanotrophicus 0 1 1 0 Mycobacterium leprae species 229 1769 2249310 species group 690 1 0 722731 Mycobacterium shigaense 0 1 690 species species 678 1 0 Mycobacterium marinum 1781 261524 516 species 0 Mycobacterium liflandii 1 1866885 13 0 11725 genus 1795 1 0 Mycobacterium neoaurum species 703 species 893 1 0 Mycobacterium thermoresistibile 1797 889 species 0 1 Mycobacterium vaccae 1810 Mycobacterium litorale 0 1 species 879 758802 134601 1 0 Mycobacterium goodii 968 species 1804 species 875 0 1 Mycobacterium gilvum 1772 species 1177 Mycobacterium smegmatis 0 1 36814 891 species 1 0 Mycobacterium rhodesiae 911 species Mycobacterium phlei 0 1 1771 0 1 Mycobacterium fortuitum 631 species 1766 Mycobacterium vanbaalenii 0 1 species 839 110539 1791 species 1224 Mycobacterium aurum 0 1 1800 1 0 Mycobacterium chubuense 845 species 697025 514 genus 0 1 514 species 1 0 Hoyosella subflava 639313 genus 1303 2 0 1073531 1 0 Mycobacterium sinense species 733 875328 1788 570 species 0 1 Mycobacterium terrae 85025 145 Nocardiaceae 0 31 family 27677 1 544 1827 1 genus 16525 23 0 Rhodococcus 0 1 Rhodococcus erythropolis species 677 1833 1829 1 0 Rhodococcus rhodochrous 703 species 103816 0 Rhodococcus pyridinivorans 1 654 species 1828 0 Rhodococcus fascians 1 560 species 806 species 0 1 Rhodococcus ruber 1830 334542 534 species 0 Rhodococcus qingshengii 1 0 1 Rhodococcus aetherivorans 979 species 191292 43767 1 0 Rhodococcus hoagii species 962 804 species 1 0 Rhodococcus jostii 132919 37919 species 2226 0 1 Rhodococcus opacus 7076 no rank 12 0 192944 species 504 Rhodococcus sp. 008 0 1 1723645 1727214 0 1 Rhodococcus sp. H-CA8f species 527 539 species 0 Rhodococcus sp. YL-1 1 1045808 438 species 0 Rhodococcus sp. WMMA185 1 679318 0 1 Rhodococcus sp. p52 686 species 935199 Rhodococcus sp. WB1 0 1 species 1023 1033922 611 species 0 1 Rhodococcus sp. PBTS 2 1653479 1570939 0 Rhodococcus sp. 2G 1 species 577 1807790 Rhodococcus sp. BH4 0 1 391 species 0 1 Rhodococcus sp. PBTS 1 578 species 1653478 species 609 0 Rhodococcus sp. MTM3W5.2 1 1805827 1564114 593 species 0 1 Rhodococcus sp. B7740 192 1817 genus 11007 1 7 0 Nocardia Nocardia brasiliensis 0 1 2397 species 37326 135487 0 Nocardia cyriacigeorgica 1 2687 species 37332 1698 species 0 1 Nocardia seriolae 1034 species 0 Nocardia nova 1 37330 455432 1 0 Nocardia terpenica 1437 species 0 1 Nocardia farcinica 1562 species 37329 60 85026 5523 family 1 Gordoniaceae 0 9 2053 194 8 0 Gordonia 1 genus 5463 Gordonia terrae 0 1 species 905 2055 84595 species 943 1 0 Gordonia polyisoprenivorans 2657482 0 2 1532 no rank species 761 0 1 Gordonia sp. YC-JH1 2059875 337191 Gordonia sp. KTR9 0 1 species 771 Gordonia bronchialis 0 1 species 506 2054 1136941 0 Gordonia phthalatica 1 794 species species 589 Gordonia iterans 0 1 1004901 Tsukamurellaceae 0 4 family 1591 1 85028 8 43 2060 1 1583 genus Tsukamurella 0 3 2061 species 663 0 Tsukamurella paurometabola 1 57704 Tsukamurella tyrosinosolvens 0 1 877 species 0 52 Corynebacteriaceae 40267 family 1 1653 384 0 51 Corynebacterium 1 genus 39883 1716 1054 Corynebacterium lactis 0 1 649 species 1231000 1 0 Corynebacterium resistens species 497 258224 1727 0 1 Corynebacterium variabile species 712 1 0 Corynebacterium flavescens 412 species 28028 species 736 1 0 Corynebacterium ammoniagenes 1697 0 Corynebacterium stationis 1 species 853 1705 814 species Corynebacterium singulare 0 1 161899 species 628 0 1 Corynebacterium urealyticum 43771 0 1 Corynebacterium testudinoris species 418 136857 0 Corynebacterium kutscheri 1 1626 species 35755 species 1083 0 1 Corynebacterium simulans 146827 108486 0 Corynebacterium falsenii 1 species 1207 43770 0 Corynebacterium striatum 1 species 1687 0 1 Corynebacterium glaucum 532 species 187491 35757 species 319 0 1 Corynebacterium cystitidis Corynebacterium frankenforstense 0 1 species 1209 1230998 477 species 1 0 Corynebacterium callunae 1721 1 0 Corynebacterium crudilactis 400 species 1652495 600 species 0 Corynebacterium ulcerans 1 65058 1050174 Corynebacterium epidermidicanis 0 1 species 504 Corynebacterium aurimucosum 0 1 species 1070 169292 161895 Corynebacterium phocae 0 1 626 species 160386 0 1 Corynebacterium casei 644 species 1490 species 0 Corynebacterium jeikeium 1 38289 92706 0 [Brevibacterium] flavum 1 species 445 2624378 0 2 no rank 990 0 Corynebacterium sp. ATCC 6931 1 species 451 1487956 0 Corynebacterium sp. NML98-0116 1 539 species 702967 1121358 species 972 Corynebacterium doosanense 0 1 species 610 1 0 Corynebacterium pseudotuberculosis 1719 1 0 Corynebacterium terpenotabidum species 593 89154 Corynebacterium imitans 0 1 860 species 156978 0 1 Corynebacterium efficiens 686 species 152794 species 816 0 Corynebacterium camporealensis 1 161896 0 1 Corynebacterium vitaeruminis species 1354 38305 Corynebacterium humireducens 0 1 species 1094 1223514 0 1 Corynebacterium uterequi 826 species 1072256 1404244 species 630 0 Corynebacterium glyciniphilum 1 161879 1 0 Corynebacterium kroppenstedtii species 300 349751 Corynebacterium marinum 0 1 species 767 425 species 0 1 Corynebacterium argentoratense 42817 1718 0 1 Corynebacterium glutamicum 1619 species 0 1 Corynebacterium diphtheriae 1119 species 1717 191493 0 Corynebacterium sphenisci 1 species 875 1408191 633 species 0 Corynebacterium deserti 1 401472 species 761 Corynebacterium ureicelerivorans 0 1 1 0 Corynebacterium atypicum species 459 191610 0 1 Corynebacterium halotolerans species 1027 225326 203263 species 717 1 0 Corynebacterium aquilae 1 0 Corynebacterium maris species 642 575200 571915 Corynebacterium mustelae 0 1 species 416 1643818 779 no rank 2 0 Thermobispora 0 2 1 779 genus 147067 3 0 1 Thermobispora bispora species 776 2006 4126 order 1 Candidatus Nanopelagicales 0 11 11 2039638 0 10 family 4115 2162846 868 genus 3 0 2039639 308 species Candidatus Nanopelagicus hibericus 0 1 1884915 1884916 0 1 Candidatus Nanopelagicus abundans species 306 1884634 Candidatus Nanopelagicus limnes 0 1 254 species 0 7 Candidatus Planktophila 1 genus 3247 622681 25 1 0 Candidatus Planktophila dulcis species 829 1884914 1884907 1 0 Candidatus Planktophila vernalis species 211 581 species Candidatus Planktophila lacus 0 1 1884913 0 1 Candidatus Planktophila sulfonica species 248 1884904 573600 1 0 Candidatus Planktophila limnetica 595 species 1884905 Candidatus Planktophila versatilis 0 1 758 species 0 4 Actinopolysporales 1 816 order 622450 1 9 622451 1 family 815 0 Actinopolysporaceae 3 6 1849 1 806 genus 2 0 Actinopolyspora 414996 0 1 Actinopolyspora erythraea 800 species 4 0 no rank 1353 1752188 1848756 0 1 Actinobacteria bacterium IMCC26103 481 species 1848755 Actinobacteria bacterium IMCC26077 0 1 species 248 1848255 0 Actinobacteria bacterium IMCC25003 1 species 332 0 Actinobacteria bacterium IMCC19121 1 species 292 1848754 1634 class 1 Thermoleophilia 0 5 19 1497346 38 588673 1615 order 1 4 0 Solirubrobacterales 320583 17 0 3 Conexibacteraceae 1 1577 family 1560 genus 1 Conexibacter 0 2 48 191494 Conexibacter woesei 0 1 1512 species 191495 84998 1118 32 0 Coriobacteriia 1 454749 class 511 84999 1 391803 order Coriobacteriales 0 14 0 7 Atopobiaceae 1 16145 family 1643824 466 0 1 1611 genus 2767353 1382 0 Atopobium parvulum 1 species 1611 1380 1 0 Atopobium 7 genus 153 133925 1 genus 14061 Olsenella 0 4 0 Olsenella uli 1 species 4278 133926 0 1 2716 no rank 2638792 712411 1 0 Olsenella sp. oral taxon 807 species 2716 1805478 species 6914 0 Olsenella sp. Marseille-P2300 1 1 family 375147 Coriobacteriaceae 0 6 2211 84107 8 33870 2278 genus 1 0 Coriobacterium 2 33871 species 2270 1 0 Coriobacterium glomerans 1 genus 367479 0 Collinsella 2 47 102106 74426 367432 species 0 1 Collinsella aerofaciens 3179 no rank 1 0 84113 1531429 3179 species 0 1 Coriobacteriaceae bacterium 68-1-3 17 0 Eggerthellales order 61828 1 1643822 951 1643826 15543 0 Eggerthellaceae 16 1 60877 family 84162 1231 genus 0 1 1231 species 1 0 Cryptobacterium curtum 84163 447020 1 Adlercreutzia 0 2 genus 6481 1 Adlercreutzia equolifaciens 0 1 6480 species 446660 1981050 1 0 2 Phoenicibacter genus 2482 1 1944646 Phoenicibacter massiliensis 0 1 2481 species 0 2 Slackia 1 genus 5449 84108 11 84110 Slackia heliotrinireducens 0 1 species 5438 84111 58 Eggerthella 0 3 1 14237 genus 84112 11923 species 0 Eggerthella lenta 1 0 1 2256 no rank 2648737 2256 species Eggerthella sp. YY7918 0 1 502558 1 2801 genus Denitrobacterium 0 2 9 79603 79604 0 1 Denitrobacterium detoxificans species 2792 0 3 Gordonibacter 1 12653 genus 644652 75 1841863 0 1 Gordonibacter massiliensis 5715 species 0 Gordonibacter urolithinfaciens 1 species 6863 1335613 1798711 98364 clade 145 0 0 Cyanobacteria 145 98364 phylum 1 1117 16 0 33 Nostocales 1 35135 order 1161 35 1174 family 1 Hapalosiphonaceae 0 3 2 1892263 1190 2 0 2 Fischerella genus 1172 1 no rank 1170 1 0 494603 1752063 0 1 Fischerella sp. NIES-3754 1170 species 2661849 7616 family 8 0 8 0 Calothrix 1 genus 7616 1186 25 0 Calothrix parietina 1 1003 species 32054 no rank 6588 0 6 2619626 2005469 0 1 Calothrix sp. NIES-4071 1978 species species 580 0 Calothrix sp. NIES-3974 1 2005462 2005461 1 0 Calothrix sp. NIES-4101 1098 species Calothrix sp. PCC 7507 0 1 1090 species 99598 1337936 1 0 Calothrix sp. 336/3 species 649 1954171 0 Calothrix sp. NIES-2098 1 species 1193 1162 10 0 Nostocaceae 17 family 22692 1 genus 16224 1 Nostoc 0 10 71 1177 0 7 no rank 10428 2593658 1304 species 1 0 Nostoc sp. PCC 7524 28072 1261031 species 2438 0 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1618022 1720 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1 1869241 0 Nostoc sp. CENA543 1 1676 species Nostoc sp. NIES-3756 0 1 1147 species 1751286 317936 species 935 1 0 Nostoc sp. PCC 7107 species 1208 1 0 Nostoc sp. PCC 7120 103690 0 Nostoc punctiforme 1 1461 species 272131 species 4264 0 1 Nostoc flagelliforme 1306274 1912 genus 2 0 264688 Trichormus azollae 0 1 889 species 1164 Trichormus variabilis 0 1 species 1023 264691 4 0 Anabaena 1 4546 genus 1163 8 2 0 no rank 1833 2619674 0 1 Anabaena sp. WA102 species 863 1647413 Anabaena sp. 90 0 1 species 970 46234 1 0 Anabaena cylindrica 2705 species 1165 1219117 1487 no rank 1 0 species 1487 Nostocales cyanobacterium HT-58-2 0 1 1940762 18 1185 1 2131 family 0 Rivulariaceae 3 1 genus 2113 0 2 Rivularia 10 373984 2676603 1 0 no rank 2103 species 2103 0 Rivularia sp. PCC 7116 1 373994 52604 20 0 7 Pleurocapsales 3403 order 1 1890500 family 808 0 2 1 44474 1 genus 808 0 2 Pleurocapsa 54308 0 Pleurocapsa minor 1 species 807 1 2575 family 4 0 Dermocarpellaceae 13 1890498 1 2562 genus Stanieria 0 3 1 102115 no rank 1474 0 1 2642663 Stanieria sp. NIES-3757 0 1 1474 species 1807358 0 Stanieria cyanosphaera 1 1087 species 102116 307596 17 0 Gloeobacteria 6 class 2180 1 5 0 Gloeobacterales 2163 order 1 307595 31 1890422 16 0 4 Gloeobacteraceae family 2132 1 28 33071 2116 genus 1 0 Gloeobacter 3 0 Gloeobacter violaceus 1 species 1173 33072 1 0 Gloeobacter kilaueensis species 915 1416614 1890424 319 Synechococcales 0 56 1 order 34543 0 2 family 939 1890429 8 155977 genus 939 1 0 2 Acaryochloris 155978 931 species 1 0 Acaryochloris marina 2303730 496 family 0 2 0 2 Halomicronema 496 genus 1 170610 3 Halomicronema hongdechloris 0 1 493 species 1209493 1 6281 family Prochloraceae 0 5 13 1213 1218 8 0 Prochlorococcus 4 6268 genus 1 2627481 no rank 980 2 0 species 544 1 0 Prochlorococcus sp. MIT 0801 1501269 1501268 1 0 Prochlorococcus sp. MIT 0604 436 species 0 1 Prochlorococcus marinus species 5280 1219 79 1890426 family 21357 1 33 0 Synechococcaceae 1 13034 genus 789 1 2 0 Dactylococcopsis 0 1 Dactylococcopsis salina species 788 292566 26 0 Synechococcus 16662 genus 1 1129 195 13040 no rank 23 0 2626047 0 1 Synechococcus sp. PCC 73109 species 373 374982 84588 600 species 0 Synechococcus sp. WH 8102 1 462 species 0 Synechococcus sp. PCC 7117 1 195498 321327 0 1 Synechococcus sp. JA-3-3Ab species 1252 species 714 0 Synechococcus sp. NIES-970 1 1827144 1350461 species 467 0 Synechococcus sp. UTEX 2973 1 321332 743 species 0 Synechococcus sp. JA-2-3B'a(2-13) 1 509 species Synechococcus sp. KORDI-52 0 1 585425 1 0 Synechococcus sp. RCC307 species 610 316278 374981 1 0 Synechococcus sp. PCC 7003 species 313 316279 260 species Synechococcus sp. CC9902 0 1 585423 549 species 1 0 Synechococcus sp. KORDI-49 304 species 0 1 Synechococcus sp. PCC 6312 195253 195248 Synechococcus sp. PCC 8807 0 1 451 species species 539 0 1 Synechococcus sp. SynAce01 1916956 578 species Synechococcus sp. WH 7803 0 1 32051 110662 1 0 Synechococcus sp. CC9605 species 611 64471 0 1 Synechococcus sp. CC9311 816 species 1 0 Synechococcus sp. KORDI-100 506 species 1280380 1173263 species 771 0 1 Synechococcus sp. PCC 7502 0 1 Synechococcus sp. PCC 7002 species 515 32049 Synechococcus sp. WH 8109 0 1 species 505 166314 592 species Synechococcus sp. WH 8103 0 1 29410 33070 species 3013 Synechococcus lividus 0 1 0 Synechococcus elongatus 1 414 species 32046 genus 205 1 0 146785 205 species 0 1 Thermosynechococcus elongatus 146786 3622 genus 1 Cyanobium 0 3 35 167375 0 1 2082 no rank 2627006 species 2082 Cyanobium sp. NIES-981 0 1 1851505 59930 species 1505 1 0 Cyanobium gracile 1890438 16 0 Leptolyngbyaceae 6 1 family 2770 2754 genus 1 0 5 Leptolyngbya 9 47251 1184 0 Leptolyngbya boryana 1 651 species 0 3 no rank 2094 2650499 species 514 1 0 Leptolyngbya sp. PCC 7376 111781 1752064 628 species 0 1 Leptolyngbya sp. NIES-3755 Leptolyngbya sp. O-77 0 1 952 species 1080068 1 1890428 2007 family 1 0 Merismopediaceae 5 1 2006 genus 4 0 Synechocystis 49 1142 3 0 1957 no rank 2640012 1147 491 species 0 1 Synechocystis sp. PCC 6714 0 Synechocystis sp. PCC 6803 1 species 733 1148 2116702 0 1 Synechocystis sp. IPPAS B-1465 733 species 374 family 2 0 1890436 9 1152 374 genus 1 Pseudanabaena 0 2 2593292 1 0 no rank 365 82654 Pseudanabaena sp. PCC 7367 0 1 species 365 1983111 572 no rank 0 1 718217 572 species 0 1 cyanobacterium endosymbiont of Epithemia turgida 1890505 550 order 0 3 1890528 30 0 3 Chroococcidiopsidaceae 550 family 1 3 54298 1 520 genus Chroococcidiopsis 0 2 54299 1 0 Chroococcidiopsis thermalis species 517 1301283 subclass 21965 38 0 10 1118 order 14466 1 Chroococcales 0 21 5526 family 1 0 Chroococcaceae 6 28 1890464 1 0 genus 1182 268175 1 0 1182 no rank 2648896 0 Chondrocystis sp. NIES-4102 1 species 1182 2005460 10 669357 1 3423 genus 0 3 Geminocystis 2625037 2 0 no rank 3413 2069 species 1 0 Geminocystis sp. NIES-3708 1615909 1617448 1344 species 0 Geminocystis sp. NIES-3709 1 893 genus 1 0 102231 2623012 no rank 893 1 0 1 0 Gloeocapsa sp. PCC 7428 893 species 1173026 1890449 6 4 0 Microcystaceae 1 1575 family 1125 5 0 Microcystis 3 genus 1569 1 2643300 0 1 no rank 564 1 0 Microcystis sp. MC19 564 species 1967666 species 1000 0 1 Microcystis aeruginosa 1126 3 1890452 1560 family 1 0 2 Cyanobacteriaceae 102234 1 0 genus 1557 379064 species 1557 Cyanobacterium aponinum 0 1 5795 family 1 8 0 Aphanothecaceae 5 1890450 0 1 genus 479 1453359 713887 1 0 Candidatus Atelocyanobacterium thalassa 479 species 263510 664 genus 0 1 2546360 1 0 species 664 strain 664 Cyanothece sp. ATCC 51142 0 1 43989 2546365 1404 genus 2 0 species 1404 2 0 2546366 395962 0 Cyanothece sp. PCC 8802 1 630 strain strain 774 1 0 Cyanothece sp. PCC 8801 41431 255 no rank 0 1 92682 255 genus 1 0 76023 255 no rank 1 0 2632878 65093 0 1 Halothece sp. PCC 7418 species 255 2 0 2988 genus 28070 2546356 species 2090 0 1 65393 2090 strain 0 Cyanothece sp. PCC 7424 1 2546359 0 1 898 species 497965 strain 898 1 0 Cyanothece sp. PCC 7822 41 1150 order 7499 1 0 17 Oscillatoriales 1 family 967 Gomontiellaceae 0 2 7 1892255 960 genus 1 0 241421 241425 Crinalium epipsammum 0 1 species 960 1 family 596 3 0 Cyanothecaceae 9 1892249 1 587 genus Cyanothece 0 2 31 43988 1 0 556 no rank 2649277 species 556 0 1 Cyanothece sp. PCC 7425 395961 family 958 1 0 3 Coleofasciculaceae 2 1892251 63132 3 2 0 Geitlerinema 1 genus 956 1 0 no rank 953 2648775 1173025 953 species 0 1 Geitlerinema sp. PCC 7407 1892254 4 5 0 Oscillatoriaceae 2301 family 1 1158 2 0 genus 1315 0 Oscillatoria acuminata 1 species 470 118323 species 845 1 0 Oscillatoria nigro-viridis 482564 1 982 genus 0 Moorea 2 1 1155738 0 1 Moorea producens species 981 1155739 1892252 3 Microcoleaceae 0 3 family 2636 1 genus 959 0 1 44471 1 0 959 no rank 2642155 1173027 0 Microcoleus sp. PCC 7113 1 species 959 1 0 1674 genus 1205 1 0 Trichodesmium erythraeum 1674 species 1206 2 0 no rank 572 1859062 1 genus 572 Thermobaculum 0 2 32 262406 species 540 0 1 Thermobaculum terrenum 166501 19219994 phylum 1 727 0 Firmicutes 545 1239 no rank 1291 0 2 33974 2 0 Ndongobacter 1291 genus 1 1930845 12 1279 species Ndongobacter massiliensis 0 1 1871025 11 0 Erysipelotrichia 39373 class 1 526524 5 0 10 Erysipelotrichales 1 order 39368 526525 21 144 128827 family 39347 1 0 9 Erysipelotrichaceae Erysipelothrix 0 3 1 genus 4623 1647 105 1648 1 0 Erysipelothrix rhusiopathiae species 2489 1514105 0 1 Erysipelothrix larvae 2029 species 191303 14 0 Turicibacter 2 1 7073 genus 2638206 1 0 7059 no rank 1712675 0 1 Turicibacter sp. H121 7059 species 2 1729679 5645 genus 1 0 2 Faecalibaculum 1702221 Faecalibaculum rodentium 0 1 species 5643 0 1 21862 no rank 544447 1834207 0 1 Erysipelotrichaceae bacterium I46 21862 species class 16031202 1 0 223 Clostridia 429 186801 1 order 49629 38 0 Thermoanaerobacterales 60 68295 60 186814 26570 family 1 0 Thermoanaerobacteraceae 20 140458 14 Thermacetogenium 0 2 1 1098 genus 1084 species 0 Thermacetogenium phaeum 1 85874 42857 0 4 no rank 2716 genus 1888 1 2 0 Moorella 6 44260 species 1882 0 Moorella thermoacetica 1 1525 42837 18 2 0 Ammonifex 1 genus 828 42838 1 0 Ammonifex degensii species 810 1 129957 1 genus 1474 0 Carboxydothermus 2 Carboxydothermus hydrogenoformans 0 1 1473 species 129958 Thermoanaerobacter 0 9 genus 19387 1 1754 506 0 1 Thermoanaerobacter italicus 2305 species 108150 496866 0 Thermoanaerobacter pseudethanolicus 1 species 2479 583357 0 Thermoanaerobacter mathranii 1 species 1801 no rank 5340 2 0 2636821 399726 Thermoanaerobacter sp. X514 0 1 2518 species 0 1 Thermoanaerobacter sp. X513 species 2822 573062 46354 2384 species 0 1 Thermoanaerobacter wiegelii 2325 0 1 Thermoanaerobacter kivui species 2093 29323 0 1 Thermoanaerobacter brockii species 2479 Caldanaerobacter 0 2 1 1835 genus 249529 1 911092 species 1834 0 1 Caldanaerobacter subterraneus 543372 44 Thermoanaerobacterales Family IV. Incertae Sedis 0 3 family 1475 1 0 2 Mahella 1431 genus 1 252965 2 252966 1429 species Mahella australiensis 0 1 85 543371 1 family 20881 Thermoanaerobacterales Family III. Incertae Sedis 0 13 280 44000 1 13832 genus Caldicellulosiruptor 0 9 0 1 Caldicellulosiruptor lactoaceticus 1855 species 52766 0 Caldicellulosiruptor saccharolyticus 1 species 2252 44001 413888 1900 species 1 0 Caldicellulosiruptor hydrothermalis 1348 species 0 Caldicellulosiruptor kronotskyensis 1 413889 Caldicellulosiruptor bescii 0 1 1509 species 31899 55205 species 1298 0 1 Caldicellulosiruptor owensensis Caldicellulosiruptor kristjanssonii 0 1 1679 species 52765 717609 1711 species Caldicellulosiruptor obsidiansis 0 1 0 3 Thermoanaerobacterium 1 genus 6964 28895 9 1517 species 4727 Thermoanaerobacterium thermosaccharolyticum 0 1 1 0 Thermoanaerobacterium xylanolyticum species 2228 29329 1 0 family 643 227387 1 0 643 genus 227388 184064 0 Thermodesulfobium narugense 1 643 species 4 0 4696 order 2770089 2093 family 2 0 2770093 2093 genus 1 Thermosediminibacter 0 2 7 291988 species 2086 0 1 Thermosediminibacter oceani 291990 2603 family 0 2 2770092 4 499228 genus 2603 1 0 Tepidanaerobacter 2 499229 0 1 Tepidanaerobacter acetatoxydans 2599 species 10 485256 order 1652 1 4 0 Natranaerobiales 0 3 Natranaerobiaceae 1642 family 1 485255 8 0 2 Natranaerobius 1 1634 genus 375928 55 375929 0 1 Natranaerobius thermophilus species 1579 1 order 15878 0 Halanaerobiales 12 8 53433 7445 family 1 0 5 Halobacteroidaceae 29 53434 1 28186 1 2360 genus 0 2 Acetohalobium 1 0 Acetohalobium arabaticum species 2359 28187 42417 3 Halobacteroides 0 2 genus 5056 1 1 0 Halobacteroides halobius 5053 species 42422 Halanaerobiaceae 0 6 8425 family 1 972 7 31 2330 6952 genus 1 3 0 Halanaerobium 1 0 Halanaerobium praevalens species 4328 2331 656519 2593 species 0 Halanaerobium hydrogeniformans 1 genus 1466 1 2 0 Halothermothrix 8 32636 31909 1458 species Halothermothrix orenii 0 1 15958918 order 1 164 0 Clostridiales 31198 186802 13 990719 32992 family 1 0 3 Christensenellaceae 2 0 Christensenella 32979 genus 1 990721 1313 0 1 Christensenella massiliensis 31666 species 1805714 52156 family 1 0 29 Peptococcaceae 147 186807 1922 genus 1 0 2282742 58138 0 1 Desulfotomaculum acetoxidans 1922 species 0 4 Dehalobacter genus 7381 1 56112 99 4701 no rank 2 0 2635733 1131462 0 1 Dehalobacter sp. CF 2509 species 2192 species 1 0 Dehalobacter sp. DCA 1147129 species 2581 1 0 Dehalobacter restrictus 55583 1 9388 genus Desulfotomaculum 0 5 116 1562 1 0 Desulfotomaculum reducens species 3217 59610 1565 1 0 Desulfotomaculum nigrificans 1565 species 1564 2233 species Desulfotomaculum ruminis 0 1 1833852 2257 species 0 1 Desulfotomaculum ferrireducens 1952 genus 0 1 2282740 1952 species 0 Desulfotomaculum gibsoniae 1 102134 1 genus 11707 5 0 Desulfitobacterium 62 36853 142877 1 0 Desulfitobacterium metallireducens species 2998 species 2176 1 0 Desulfitobacterium dehalogenans 36854 233055 0 1 Desulfitobacterium dichloroeliminans 2549 species 0 Desulfitobacterium hafniense 1 3922 species 49338 2 0 Syntrophobotulus genus 2107 1 51196 5 51197 Syntrophobotulus glycolicus 0 1 2102 species 471826 6 0 Candidatus Desulforudis 2 1 genus 1330 0 1 Candidatus Desulforudis audaxviator 1324 species 471827 1 4254 genus 0 2 Dehalobacterium 12 51514 4242 species 0 Dehalobacterium formicoaceticum 1 51515 128 79206 10286 genus 1 Desulfosporosinus 0 4 79209 2372 species 0 Desulfosporosinus meridiei 1 3366 species Desulfosporosinus orientis 0 1 1563 Desulfosporosinus acidiphilus 0 1 species 4420 885581 2 278993 1682 genus 1 Thermincola 0 2 863643 Thermincola potens 0 1 1680 species 12 0 55508 family 2304686 1508657 469 Ruminiclostridium 0 2 1 genus 4748 1521 4279 species [Clostridium] cellulolyticum 0 1 2304691 1 0 3139 genus 1510 1 0 [Clostridium] stercorarium species 3139 0 1 no rank 23273 2305130 species 23273 Ruminiclostridium sp. KB18 0 1 1834198 6 1637257 1 genus 4808 2 0 Mageeibacillus 4802 species 1 0 Mageeibacillus indolicus 884684 12893 genus 0 3 2304692 1677857 1 0 Herbivorax saccincola 3596 species 288965 1 0 [Clostridium] clariflavum 4833 species 1515 species 4464 0 1 Ruminiclostridium thermocellum 2304693 genus 3811 1 0 3811 species 0 [Clostridium] thermosuccinogenes 1 84032 genus 2836 1 0 Fastidiosipila 2 7 236752 236753 0 Fastidiosipila sanguinis 1 species 2829 2685185 family 1 0 Ruminococcaceae 12 709 541000 131 946234 genus 80245 1 Flavonifractor 0 2 292800 0 1 Flavonifractor plautii 80114 species 3 0 Ruminococcus 62992 genus 1 1263 104 1264 1 0 Ruminococcus albus species 12887 0 1 Ruminococcus bicirculans 50001 species 1160721 29 253238 13869 genus 1 2 0 Ethanoligenens species 13840 Ethanoligenens harbinense 0 1 253239 genus 2505947 1 Faecalibacterium 0 2 2755 216851 species 2503192 1 0 Faecalibacterium prausnitzii 853 0 1 15498 no rank 2305133 1572656 1 0 Ruminococcaceae bacterium CPB6 15498 species no rank 5925 1 0 552397 29343 5925 species 0 [Clostridium] cellulosi 1 family 22324 1 0 4 Eubacteriaceae 32 186806 1 genus 19603 0 Eubacterium 2 1608 1730 1736 17995 species 0 1 Eubacterium limosum genus 2689 0 1 33951 0 Acetobacterium woodii 1 2689 species 33952 0 41 Clostridiaceae 1 family 440689 31979 1474 0 3 Alkaliphilus 1 genus 6696 114627 18 461876 2394 species 0 1 Alkaliphilus oremlandii 208226 species 4284 0 Alkaliphilus metalliredigens 1 30 0 Clostridium 1 genus 420550 1485 1094 0 2 116098 no rank 2614128 755731 Clostridium sp. BNL1100 0 1 species 6057 1042156 0 1 Clostridium sp. SY8519 110041 species 46867 7465 species 1 0 Clostridium chauvoei species 10100 1 0 Clostridium saccharobutylicum 169679 0 1 Clostridium ljungdahlii species 5806 1538 0 1 Clostridium cochlearium 6483 species 1494 217159 Clostridium carboxidivorans 0 1 species 8596 species 9003 0 1 Clostridium sporogenes 1509 394958 Clostridium taeniosporum 0 1 species 6669 species 4527 Clostridium acetobutylicum 0 1 1488 0 Clostridium baratii 1 13624 species 1561 0 Clostridium saccharoperbutylacetonicum 1 12814 species 36745 1497 species 3904 Clostridium formicaceticum 0 1 species 7161 0 1 Clostridium bornimense 1216932 1491 0 Clostridium botulinum 1 51698 species 1542 species 5586 1 0 Clostridium novyi 1513 0 1 Clostridium tetani species 11472 1502 species 32223 1 0 Clostridium perfringens 0 1 Clostridium estertheticum 7131 species 238834 9761 species 0 1 Clostridium cellulovorans 1493 1 0 Clostridium scatologenes species 8535 1548 1501 0 Clostridium pasteurianum 1 species 15989 84022 4237 species 0 1 Clostridium aceticum 18921 species 1 0 Clostridium beijerinckii 1520 1 0 Clostridium tyrobutyricum 5209 species 1519 84023 0 Clostridium autoethanogenum 1 6128 species 1492 14213 species 1 0 Clostridium butyricum 1 0 Clostridium kluyveri species 8677 1534 1 0 Clostridium argentinense species 7426 29341 6719 genus 1 Candidatus Arthromitus 0 4 15 49082 3 0 6704 no rank 2638829 49118 0 1 Candidatus Arthromitus sp. SFB-mouse 1933 species 2893 species 1 0 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 1 0 Candidatus Arthromitus sp. SFB-mouse-NL 1878 species 1508644 1981033 0 Mordavella 1 287 genus 33 390805 1 4963 genus 0 2 Geosporobacter 1424294 Geosporobacter ferrireducens 0 1 4930 species 31984 38 0 Heliobacteriaceae 3 1 family 3940 39 2697 1 3902 genus Heliobacterium 0 2 3863 species 1 0 Heliobacterium modesticaldum 35701 186803 3370 0 Lachnospiraceae 27 family 12230281 1 0 Anaerostipes 2 1 genus 264809 207244 56 Anaerostipes hadrus 0 1 264753 species 649756 28050 0 1 246344 genus 0 [Eubacterium] eligens 1 246344 species 39485 223 572511 1 genus 220876 0 3 Blautia 2648079 0 1 no rank 76988 1796616 species 76988 0 Blautia sp. YL58 1 0 1 Blautia hansenii species 143665 1322 2719313 1 0 genus 164487 208479 164487 species 1 0 [Clostridium] bolteae 2569097 0 1 genus 304357 39488 304357 species [Eubacterium] hallii 0 1 1 genus 688203 0 Roseburia 2 41 841 301301 0 Roseburia hominis 1 688162 species 2 0 Cellulosilyticum 1 genus 12043 698776 2 0 1 Cellulosilyticum lentocellum 12041 species 29360 genus 68589 0 1 2719231 species 68589 [Clostridium] saccharolyticum 0 1 84030 4 0 Lachnoclostridium 1 genus 166457 1506553 774 66219 species 13841 Lachnoclostridium phytofermentans 0 1 2608895 76506 no rank 1 0 1 0 Lachnoclostridium sp. YL32 species 76506 1834196 1871021 1 0 Lachnoclostridium phocaeense 75336 species 186928 10041521 no rank 0 2 species 10016972 [Eubacterium] rectale 0 1 39491 species 24549 0 Lachnospiraceae bacterium oral taxon 500 1 712991 35 830 genus 32170 1 0 3 Butyrivibrio species 15401 0 1 Butyrivibrio hungatei 185008 species 16734 0 Butyrivibrio proteoclasticus 1 43305 1663717 5 0 2 Herbinix 10045 genus 1 1679721 0 Herbinix luporum 1 species 10040 1 7010 genus Anaerotignum 0 2 8 2039240 28446 1 0 Anaerotignum propionicum species 7002 538999 no rank 197000 0 10 2717089 genus 122836 1 0 2086584 122836 species 0 1 Mordavella sp. Marseille-P3756 1331 1392389 genus 63943 1 2 0 Intestinimonas 1297617 0 Intestinimonas butyriciproducens 1 species 62612 family 2078 1 0 3 Clostridiales Family XVII. Incertae Sedis 18 539000 1 2060 genus 0 Thermaerobacter 2 17 73918 0 1 Thermaerobacter marianensis species 2043 73919 17 543314 8143 family 1 0 Clostridiales Family XIII. Incertae Sedis 4 143393 4827 species 0 1 [Eubacterium] sulci 26 86331 3299 genus 1 Mogibacterium 0 2 0 1 Mogibacterium diversum 3273 species 114527 5 0 Syntrophomonadaceae 1509 family 1 68298 4 1 genus 571 0 2 Syntrophothermus 4 129001 species 567 0 1 Syntrophothermus lipocalidus 86170 862 1 0 Syntrophomonas 2 genus 934 1 1 0 Syntrophomonas wolfei species 933 863 family 183864 1 0 11 Peptostreptococcaceae 326 186804 0 Paeniclostridium 2 7900 genus 1 1849828 4 1505 0 Paeniclostridium sordellii 1 species 7896 3380 genus 1 0 Filifactor 2 1 44259 143361 species 3379 0 Filifactor alocis 1 1 0 genus 3831 1481960 0 Peptoclostridium acidaminophilum 1 3831 species 1731 1411023 0 1 2494 no rank 0 Peptostreptococcaceae bacterium oral taxon 929 1 2494 species 2081703 186831 8 2 0 Acetoanaerobium 1 genus 4023 1511 species 4015 Acetoanaerobium sticklandii 0 1 161910 genus 1 0 Clostridioides 2 191 1870884 species 161719 0 Clostridioides difficile 1 1496 2 216572 1 family 19393 0 3 Oscillospiraceae 459786 41 0 2 Oscillibacter 19391 genus 1 351091 1 0 Oscillibacter valericigenes species 19350 0 Symbiobacteriaceae 3 1 2879 family 543349 13 2733 22 Symbiobacterium 0 2 genus 2866 1 Symbiobacterium thermophilum 0 1 2844 species 2734 84086 2023 no rank 0 1 2023 species 0 1 endosymbiont 'TC1' of Trimyema compressum 243899 10 1676648 class 1544 1 0 Limnochordia 5 49 1676649 order 1534 1 0 Limnochordales 4 1676650 7 3 0 Limnochordaceae 1485 family 1 genus 1478 1 0 2 Limnochorda 11 1676651 1555112 1 0 Limnochorda pilosa 1467 species 1 37047 class 0 Tissierellia 19 22 1737404 1010 1737405 order 34619 1 Tissierellales 0 16 5764 1570339 29107 family 1 0 12 Peptoniphilaceae 1161127 4 Murdochiella 0 2 1 6358 genus 1852373 6354 species 0 Murdochiella vaginalis 1 0 Anaerococcus 3 1 genus 6139 165779 18 33034 2853 species Anaerococcus prevotii 0 1 Anaerococcus mediterraneensis 0 1 3268 species 1870984 genus 3564 1 0 Parvimonas 2 47 543311 3517 species Parvimonas micra 0 1 33033 1 4507 genus 0 Finegoldia 2 70 150022 1260 species 4437 Finegoldia magna 0 1 162289 6 Peptoniphilus 0 2 genus 2775 1 0 1 no rank 2769 2637196 1912856 0 Peptoniphilus sp. ING2-D1G 1 2769 species 4502 family 1 Gottschalkiaceae 0 3 3 2042895 1505664 4 0 Gottschalkia 2 1 genus 4499 1556 0 1 Gottschalkia acidurici species 4495 1737407 no rank 2406 0 2 18 1582879 1 2406 genus 0 Ezakiella 2 0 Ezakiella massiliensis 1 2388 species 1852374 1 class 1172238 0 Bacilli 434 769 91061 830 1385 1 617769 order 0 Bacillales 267 Thermoactinomycetaceae 0 4 family 1158 1 186824 2 0 1 Laceyella genus 19 292635 1677050 75 2 0 Novibacillus 1 genus 1137 1471761 0 Novibacillus thermophilus 1 1062 species 9 0 Listeriaceae 24762 family 1 186820 139 1 genus 23227 0 Listeria 6 203 1637 1643 0 Listeria welshimeri 1 species 2554 1638 Listeria ivanovii 0 1 4110 species 1640 0 1 Listeria seeligeri 3336 species species 9348 1 0 Listeria monocytogenes 1639 Listeria innocua 0 1 species 3676 1642 1396 genus 1 2 0 Brochothrix 3 2755 1393 species 0 Brochothrix thermosphacta 1 2756 186823 51 9 0 Alicyclobacillaceae 1 family 7717 1 genus 1839 0 Kyrpidia 3 37 1129704 species 919 0 Kyrpidia tusciae 1 33943 species 883 1 0 Kyrpidia sp. EA-1 2055160 22 432330 1 genus 3699 3 0 Tumebacillus species 2026 0 Tumebacillus avium 1 1903704 0 1 Tumebacillus algifaecis species 1651 1214604 25 29330 1 genus 2128 Alicyclobacillus 0 2 405212 species 2103 1 0 Alicyclobacillus acidocaldarius 9 0 no rank 7842 539002 539738 2 0 no rank 2377 1378 6 0 Gemella 2 2377 genus 1 no rank 2371 0 1 2624949 1785995 Gemella sp. oral taxon 928 0 1 2371 species 539742 7 0 no rank 5465 1 5465 genus Exiguobacterium 0 7 112 33986 2644629 no rank 3497 0 4 1399115 species 535 1 0 Exiguobacterium sp. MH3 1849031 1 0 Exiguobacterium sp. U13-1 1096 species 1077 species 0 Exiguobacterium sp. ZWU0009 1 1224749 0 Exiguobacterium sp. AT1b 1 789 species 360911 132920 species 923 1 0 Exiguobacterium antarcticum 0 1 Exiguobacterium sibiricum species 933 332410 376 186822 1 113758 family 0 Paenibacillaceae 46 genus 96006 1 0 Paenibacillus 36 820 44249 189425 0 1 Paenibacillus graminis 2841 species 1451 species 1 0 Paenibacillus swuensis 1178515 414771 species 3157 Paenibacillus donghaensis 0 1 2582 species 0 Paenibacillus bovis 1 1616788 13 0 no rank 34170 185978 1536771 species 3011 0 Paenibacillus sp. FSL R5-0912 1 324057 1 0 Paenibacillus sp. JDR-2 species 2373 481743 1 0 Paenibacillus sp. Y412MC10 2005 species species 3043 Paenibacillus sp. IHBB 10380 0 1 1566358 1536770 species 2314 0 1 Paenibacillus sp. FSL R5-0345 1870819 species 2510 0 Paenibacillus sp. BIHB4019 1 0 Paenibacillus sp. FSL R7-0331 1 3024 species 1536773 1 0 Paenibacillus sp. lzh-N1 species 2170 2069255 0 Paenibacillus sp. FSL R7-0273 1 species 3095 1536772 species 2780 0 Paenibacillus sp. FSL H7-0737 1 1536775 1536769 0 1 Paenibacillus sp. FSL P4-0081 species 2921 1695218 0 Paenibacillus sp. 32O-W 1 species 1480 species 3444 0 1 Paenibacillus sp. FSL H7-0357 1536774 1126833 0 1 Paenibacillus beijingensis 1941 species 1462996 species 2493 Paenibacillus yonginensis 0 1 0 1 Paenibacillus mucilaginosus 3460 species 61624 169760 3133 species Paenibacillus stellifer 0 1 365617 1856 species Paenibacillus sabinae 0 1 44251 species 3623 0 1 Paenibacillus durus 1406 6800 species 1 0 Paenibacillus polymyxa 159743 species 2302 0 Paenibacillus terrae 1 1 0 Paenibacillus odorifer 2492 species 189426 1 0 Paenibacillus crassostreae species 2485 1763538 1870820 2459 species 0 Paenibacillus ihbetae 1 162209 species 1755 Paenibacillus naphthalenovorans 0 1 172713 0 1 Paenibacillus kribbensis 2286 species 1464 3016 species 1 0 Paenibacillus larvae 2044880 1 0 3282 species group Paenibacillus riograndensis 0 1 species 3282 483937 160799 species 3647 0 1 Paenibacillus borealis 0 Paenibacillus xylanexedens 1 1996 species 528191 1959 species 1 0 Paenibacillus peoriae 59893 4351 no rank 0 3 85151 8 55079 1 4351 genus Aneurinibacillus 0 3 2642329 1416 no rank 0 1 1450761 species 1416 1 0 Aneurinibacillus sp. XH2 species 2927 Aneurinibacillus soli 0 1 1500254 32 55080 genus 10654 1 4 0 Brevibacillus 0 Brevibacillus formosus 1 1888 species 54913 1465 0 1 Brevibacillus laterosporus 6504 species 2230 species 0 1 Brevibacillus brevis 1393 1 2371 genus 0 2 Thermobacillus 63 76632 2308 species 1 0 Thermobacillus composti 377615 0 41 Staphylococcaceae 1 120540 family 90964 3360 1279 1611 0 Staphylococcus 33 1 108005 genus species 1794 Staphylococcus agnetis 0 1 985762 Staphylococcus lugdunensis 0 1 species 3164 28035 1296 3653 species 0 Staphylococcus sciuri 1 155085 species 1232 0 Staphylococcus lutrae 1 2479 species Staphylococcus pseudintermedius 0 1 283734 29385 1 0 Staphylococcus saprophyticus species 3124 0 Staphylococcus stepanovicii 1 3253 species 643214 0 Staphylococcus pettenkoferi 1 1279 species 170573 species 2692 Staphylococcus haemolyticus 0 1 1283 1284 1 0 Staphylococcus hyicus 2313 species 46127 species 1651 Staphylococcus felis 0 1 species 6828 Staphylococcus pasteuri 0 1 45972 0 1 Staphylococcus argenteus species 2524 985002 1294 0 Staphylococcus muscae 1 species 1392 214473 species 3913 0 Staphylococcus nepalensis 1 2187 species 0 1 Staphylococcus schleiferi 1295 1292 2390 species Staphylococcus warneri 0 1 0 1 2663 no rank 91994 species 2663 0 Staphylococcus sp. AntiMn-1 1 1715860 1282 0 1 Staphylococcus epidermidis species 5798 70258 0 Staphylococcus piscifermentans 1 species 2885 species 3595 1 0 Staphylococcus condimenti 70255 0 1 Staphylococcus capitis species 3213 29388 29384 2133 species 0 Staphylococcus kloosii 1 0 1 Staphylococcus succinus species 2298 61015 1290 0 Staphylococcus hominis 1 species 3967 1281 Staphylococcus carnosus 0 1 3010 species species 3609 Staphylococcus cohnii 0 1 29382 species 4493 0 1 Staphylococcus simiae 308354 0 Staphylococcus equorum 1 species 5237 246432 1286 species 3001 0 1 Staphylococcus simulans 1 0 Staphylococcus aureus species 9567 1280 1288 5057 species 1 0 Staphylococcus xylosus 45669 3 2 0 Salinicoccus 1 1687 genus species 1684 Salinicoccus halodurans 0 1 407035 69965 41 Macrococcus 0 4 genus 6416 1 1855823 1448 species 0 Macrococcus canis 1 69966 species 1953 Macrococcus caseolyticus 0 1 no rank 2974 1 0 2619255 1898474 species 2974 0 1 Macrococcus sp. IME1552 genus 1072 0 1 2005363 0 1 Auricoccus indicus 1072 species 1849491 451 186817 298253 family 1 0 119 Bacillaceae 1 13704 genus 0 Geobacillus 15 720 129337 767 species 0 Geobacillus subterraneus 1 129338 1921421 733 species 0 Geobacillus genomosp. 3 1 33940 species 1702 1 0 Geobacillus thermodenitrificans 2642459 0 6 4595 no rank 471223 Geobacillus sp. WCH70 0 1 species 1023 1233873 766 species 1 0 Geobacillus sp. GHH01 581103 0 Geobacillus sp. Y4.1MC1 1 1879 species 232 species 1 0 Geobacillus sp. Y412MC52 550542 691437 411 species Geobacillus sp. C56-T3 0 1 species 284 0 Geobacillus sp. Y412MC61 1 544556 species group 3970 4 0 1505648 33938 1 0 Geobacillus thermocatenulatus 573 species 33941 species 2140 0 Geobacillus thermoleovorans 1 1462 461 species 0 1 Geobacillus kaustophilus 0 Geobacillus lituanicus 1 796 species 169283 1217 species 1 0 Geobacillus stearothermophilus 1422 2675234 genus 14762 0 5 300825 3057 species 0 1 Bacillus lehensis species 3319 0 1 Bacillus clausii 79880 species 4352 1 0 Bacillus krulwichiae 199441 0 Bacillus pseudofirmus 1 2650 species 79885 86665 1384 species Bacillus halodurans 0 1 4 45667 genus 3498 1 0 Halobacillus 3 1676 species 0 Halobacillus halophilus 1 1570 402384 1818 species 1 0 Halobacillus mangrovi 0 5 Lysinibacillus 1 17981 genus 400634 90 3230 species 1 0 Lysinibacillus varians 1145276 4094 no rank 1 0 2636778 2072025 4094 species 1 0 Lysinibacillus sp. YS11 1421 Lysinibacillus sphaericus 0 1 8027 species 28031 2540 species 1 0 Lysinibacillus fusiformis 2 1906945 1925 genus 1 0 Parageobacillus 2 1 0 Parageobacillus thermoglucosidasius 1923 species 1426 2675229 2 0 genus 4917 Bacillus muralis 0 1 1855 species 264697 1478 3062 species 0 Bacillus simplex 1 1386 7296 58 0 Bacillus 1 184998 genus 1 0 Bacillus coagulans species 3884 1398 86664 0 Bacillus flexus 1 3454 species 86661 0 10 68849 species group 1392 0 Bacillus anthracis 1 2424 species species 2515 1 0 Bacillus bombysepticus 658666 1396 1 0 Bacillus cereus species 20840 0 1 Bacillus cytotoxicus 2840 species 580165 155322 2641 species 0 1 Bacillus toyonensis 1428 20047 species 0 Bacillus thuringiensis 1 2750818 3 0 no rank 7634 2053832 0 1 Bacillus sp. HBCD-sjtu 2369 species 1839798 0 1 Bacillus sp. FDAARGOS_235 species 2728 Bacillus sp. ABP14 0 1 species 2537 1892404 1405 species 9908 Bacillus mycoides 0 1 0 Bacillus aryabhattai 1 4066 species 412384 0 Bacillus horikoshii 1 1614 species 79883 0 Bacillus xiamenensis 1 species 2288 1178537 185979 0 19 22611 no rank species 960 Bacillus sp. OxB-1 0 1 98228 1628753 0 1 Bacillus sp. LM 4-2 species 296 1565991 Bacillus sp. X1(2014) 0 1 species 3299 481 species 0 1 Bacillus sp. MD-5 2009331 1941347 species 341 1 0 Bacillus sp. 275 species 1191 1 0 Bacillus sp. 1s-1 2026248 1837130 1024 species 0 Bacillus sp. FJAT-14266 1 1570330 species 302 1 0 Bacillus sp. BH072 0 1 Bacillus sp. Pc3 389 species 1446792 0 Bacillus sp. IHB B 7164 1 species 4650 1827146 563169 species 470 0 1 Bacillus sp. SJ-10 1 0 Bacillus sp. H15-1 1191 species 1856406 0 Bacillus sp. SDLI1 1 species 962 1774743 373 species Bacillus sp. (in: Bacteria) 0 1 1409 1574141 369 species 0 Bacillus sp. YP1 1 2049935 species 284 0 1 Bacillus sp. Lzh-5 species 2840 0 1 Bacillus sp. WP8 756828 465 species 0 Bacillus sp. JS 1 1127744 2724 species 1 0 Bacillus sp. 1NLA3E 666686 1413 species 2307 1 0 Bacillus cellulosilyticus 1 0 Bacillus megaterium 10600 species 1404 561879 Bacillus safensis 0 1 species 4757 1 0 Bacillus glycinifermentans 1631 species 1664069 632773 0 Bacillus beveridgei 1 1097 species 1 0 Bacillus endophyticus 5463 species 135735 324767 0 Bacillus infantis 1 species 1720 1 0 Bacillus methanolicus 2046 species 1471 species 3879 1 0 Bacillus weihaiensis 1547283 species group 21035 9 0 653685 1452 0 Bacillus atrophaeus 1 species 2392 species 1673 0 Bacillus paralicheniformis 1 1648923 1402 species 1793 Bacillus licheniformis 0 1 1938374 3 0 5503 species subgroup 2608 species 1 0 Bacillus amyloliquefaciens 1390 Bacillus siamensis 0 1 709 species 659243 species 2186 Bacillus velezensis 0 1 492670 1423 7419 species 0 1 Bacillus subtilis 119858 1997 species 0 Bacillus sonorensis 1 72361 1 0 Bacillus vallismortis 258 species species 1790 Bacillus smithii 0 1 1479 33932 1 0 Bacillus cohnii species 3235 79881 species 421 1 0 Bacillus gibsonii species 8632 Bacillus pumilus 0 1 1408 2323 species group 0 1 1792192 1 0 Bacillus altitudinis 2323 species 293387 1 0 genus 1103 351195 0 Salimicrobium jeotgali 1 species 1103 1230341 0 2 Oceanobacillus 1 4383 genus 182709 3 182710 species 4380 0 1 Oceanobacillus iheyensis 2 459532 2572 genus 1 2 0 Terribacillus 586416 1 0 Terribacillus aidingensis 2570 species 1 2033 genus 2 0 Aeribacillus 6 1055323 33936 0 1 Aeribacillus pallidus species 2027 0 Virgibacillus 7 genus 17460 1 84406 96 1482 0 1 Virgibacillus halodenitrificans species 2736 3389 species Virgibacillus necropolis 0 1 163877 2 0 no rank 5214 2620237 1 0 Virgibacillus sp. SK37 species 2682 403957 Virgibacillus sp. 6R 0 1 species 2532 1911587 2017483 Virgibacillus phasianinus 0 1 1764 species 1473 species 4261 Virgibacillus pantothenticus 0 1 genus 2713 1 0 29331 species 2713 0 Amphibacillus xylanus 1 1449 2675230 2 0 7237 genus 859143 species 2964 0 Bacillus kochii 1 1 0 Bacillus oceanisediminis 4273 species 665099 1329200 10 Fictibacillus 0 3 1 5779 genus 1221500 0 1 Fictibacillus phosphorivorans 3015 species 255247 1 0 Fictibacillus arsenicus 2754 species 2 175304 1881 genus 1 0 2 Lentibacillus Lentibacillus amyloliquefaciens 0 1 1879 species 1472767 150247 9 Anoxybacillus 0 6 genus 10856 1 1 0 Anoxybacillus flavithermus 3219 species 33934 0 1 Anoxybacillus amylolyticus 1952 species 294699 0 2 no rank 3782 2639704 species 1821 0 Anoxybacillus sp. B7M1 1 1490057 1490052 Anoxybacillus sp. B2M1 0 1 species 1961 198467 1894 species 1 0 Anoxybacillus gonensis family 1556 1 2 0 Sporolactobacillaceae 5 186821 1551 no rank 0 1 663587 1551 species 0 [Bacillus] selenitireducens 1 85683 113 186818 41353 family 1 Planococcaceae 0 27 genus 3388 1 0 2 Jeotgalibacillus 4 157226 1508404 Jeotgalibacillus malaysiensis 0 1 3384 species 1372 179 Planococcus 0 12 1 15520 genus 0 1 Planococcus halocryophilus 1043 species 1215089 no rank 2552 2 0 2662419 1429 species 0 Planococcus sp. PAMC 21323 1 1526927 species 1123 Planococcus sp. MB-3u-03 0 1 2058136 1038856 species 944 1 0 Planococcus plakortidis 1302659 species 1747 0 1 Planococcus sp. L10.15 species 2539 Planococcus donghaensis 0 1 414778 161360 species 867 1 0 Planococcus antarcticus 2216 species 0 Planococcus maritimus 1 192421 species 1326 0 Planococcus rifietoensis 1 200991 species 1117 1 0 Planococcus faecalis 1598147 990 species 0 Planococcus kocurii 1 1374 648800 17 Solibacillus 0 3 genus 5933 1 76853 0 1 Solibacillus silvestris 3514 species 2402 no rank 0 1 2637870 2048654 1 0 Solibacillus sp. R5-41 2402 species genus 2611 1 2 0 Rummeliibacillus 5 648802 241244 species 2606 Rummeliibacillus stabekisii 0 1 1 3160 genus 0 2 Kurthia 8 1649 2644826 no rank 3152 1 0 1750719 0 Kurthia sp. 11kri321 1 3152 species 1 10628 genus Sporosarcina 0 5 41 1569 6122 species 1 0 Sporosarcina ureae 1571 0 2 3464 no rank 2647733 1930546 species 1650 0 1 Sporosarcina sp. P37 1930764 species 1814 Sporosarcina sp. P33 0 1 0 Sporosarcina psychrophila 1 1001 species 1476 11088 186826 order 553700 1 0 166 Lactobacillales Leuconostocaceae 0 18 family 20657 1 81850 5 1 genus 5943 0 6 Weissella 7 46255 species 1069 1 0 Weissella ceti 759620 species 1084 0 Weissella paramesenteroides 1 1249 137591 0 1 Weissella cibaria species 1356 165096 species 1279 Weissella koreensis 0 1 Weissella jogaejeotgali 0 1 1148 species 1631871 1 1399 genus 2 0 Oenococcus 2 46254 Oenococcus oeni 0 1 1397 species 1247 96 1243 1 genus 13310 0 9 Leuconostoc Leuconostoc lactis 0 1 1278 species 1246 species 2178 0 Leuconostoc mesenteroides 1 1245 136609 0 Leuconostoc kimchii 1 1734 species 1181 no rank 1 0 2685106 1181 species 1 0 Leuconostoc sp. C2 979982 2537 species Leuconostoc carnosum 0 1 1252 33964 1 0 Leuconostoc citreum 1829 species 0 1 Leuconostoc gelidum species 1908 1244 species 569 Leuconostoc garlicum 0 1 255248 186828 36 Carnobacteriaceae 0 11 family 19846 1 0 5 Carnobacterium 1 13201 genus 2747 111 1 0 Carnobacterium maltaromaticum species 3861 2751 257487 6189 no rank 0 2 0 1 Carnobacterium sp. 17-4 4773 species 208596 1564681 1416 species 0 Carnobacterium sp. CP1 1 147709 Carnobacterium inhibens 0 1 3040 species Marinilactibacillus 0 2 2943 genus 1 191769 3 0 1 2940 no rank 2632303 1911586 Marinilactibacillus sp. 15R 0 1 2940 species 1 3666 genus 0 Jeotgalibaca 3 34 1470540 708126 species 1595 0 Jeotgalibaca dankookensis 1 0 1 2037 no rank 2621505 0 Jeotgalibaca sp. PTS2502 1 2037 species 1903686 33958 641 Lactobacillaceae 0 58 1 122719 family 541 genus 0 1 2767877 148814 1 0 Lactobacillus kunkeei species 541 0 3 genus 7320 2759736 1597 1 0 Lactobacillus paracasei 2205 species 1 0 Lactobacillus casei species 3256 1582 47715 1 0 Lactobacillus rhamnosus 1859 species 3934 genus 3 0 2767842 1590 0 Lactobacillus plantarum 1 2045 species 60520 1 0 Lactobacillus paraplantarum species 544 species 1345 0 Lactobacillus pentosus 1 1589 2742598 genus 6210 0 3 species 1137 Lactobacillus fermentum 0 1 1613 0 Lactobacillus mucosae 1 2353 species 97478 1598 1 0 Lactobacillus reuteri species 2720 2767887 0 4 17543 genus Lactobacillus ruminis 0 1 5592 species 1623 1282 species 1 0 Lactobacillus agilis 1601 905 species Lactobacillus acidipiscis 0 1 89059 1624 9764 species 1 0 Lactobacillus salivarius 2767879 0 6 13942 genus 0 1 Lactobacillus ginsenosidimutans species 1768 1007676 1074467 0 Lactobacillus heilongjiangensis 1 2240 species 1612 Lactobacillus farciminis 0 1 species 2509 1847728 1 0 Lactobacillus allii species 2874 392416 species 2206 Lactobacillus crustorum 0 1 0 1 Lactobacillus alimentarius 2345 species 1602 1520 genus 0 1 2767876 1520 species 1 0 Lactobacillus amylophilus 1603 2767889 2 0 genus 2634 1221 species 0 Lactobacillus backii 1 375175 species 1413 0 Lactobacillus coryniformis 1 1610 1253 13 6 0 Pediococcus 1 7314 genus species 903 0 Pediococcus claussenii 1 187452 species group 1301 0 1 1670797 1254 1301 species 1 0 Pediococcus acidilactici 51663 species 1608 0 1 Pediococcus damnosus 0 Pediococcus pentosaceus 1 2456 species 1255 1033 species 0 1 Pediococcus inopinatus 114090 2767893 genus 3211 0 3 1581 0 Lactobacillus buchneri 1 species 1408 Lactobacillus curieae 0 1 species 946 1138822 Lactobacillus parabuchneri 0 1 species 857 152331 0 3 genus 2144 2767886 0 Lactobacillus koreensis 1 species 576 637971 1580 1080 species Lactobacillus brevis 0 1 488 species 1 0 Lactobacillus zymae 267363 2767890 1 0 1473 genus Lactobacillus hokkaidonensis 0 1 species 1473 1193095 Lactobacillus 0 16 46291 genus 1 1578 3718 1579 Lactobacillus acidophilus 0 1 species 2405 species 9653 0 Lactobacillus amylovorus 1 1604 52242 0 1 Lactobacillus gallinarum 1870 species 33959 Lactobacillus johnsonii 0 1 species 6170 species 3908 Lactobacillus delbrueckii 0 1 1584 109790 Lactobacillus jensenii 0 1 species 1537 1596 4888 species Lactobacillus gasseri 0 1 0 1 Lactobacillus amylolyticus species 772 83683 267818 species 1520 Lactobacillus kefiranofaciens 0 1 1587 1 0 Lactobacillus helveticus species 3493 5531 no rank 0 4 2620435 2099788 0 Lactobacillus sp. CBA3605 1 3176 species 2099789 1 0 Lactobacillus sp. CBA3606 596 species 2108362 0 Lactobacillus sp. D1501 1 species 402 1545702 0 Lactobacillus sp. wkB8 1 1357 species 1600 826 species 0 Lactobacillus acetotolerans 1 2767885 genus 4780 2 0 Lactobacillus sakei 0 1 species 2441 1599 28038 species 2339 1 0 Lactobacillus curvatus 1 0 genus 828 2767892 240427 species 828 0 1 Lactobacillus paracollinoides 2767881 0 2 2393 genus 0 1 Lactobacillus sanfranciscensis species 975 1625 1418 species 0 1 Lactobacillus lindneri 53444 7 186827 1 7851 family 0 8 Aerococcaceae 1375 185 Aerococcus 0 7 1 genus 7844 0 Aerococcus urinaeequi 1 species 1421 51665 1204 species 0 Aerococcus viridans 1 1377 128944 species 1163 0 Aerococcus urinaehominis 1 1 0 Aerococcus urinae 1342 species 1376 0 Aerococcus sanguinicola 1 974 species 119206 species 1555 0 Aerococcus christensenii 1 87541 7028 1300 family 294180 1 0 49 Streptococcaceae 1 genus 264224 0 Streptococcus 43 11183 1301 1305 0 1 Streptococcus sanguinis 1355 species species 1181 0 1 Streptococcus pseudopneumoniae 257758 2909 species 0 1 Streptococcus mutans 1309 Streptococcus lutetiensis 0 1 species 9248 150055 1314 Streptococcus pyogenes 0 1 3990 species 1308 1 0 Streptococcus thermophilus species 4090 0 1 Streptococcus uberis species 3187 1349 82348 1375 species 0 1 Streptococcus pluranimalium 28037 species 5719 Streptococcus mitis 0 1 1779 species 0 Streptococcus iniae 1 1346 315405 0 Streptococcus gallolyticus 1 5360 species 1825069 0 1 Streptococcus marmotae species 1726 2 0 5235 species group 119603 1334 0 1 Streptococcus dysgalactiae species 1900 1336 1 0 Streptococcus equi species 3335 1318 Streptococcus parasanguinis 0 1 species 4929 species 1533 Streptococcus halotolerans 0 1 1814128 2873 species Streptococcus macedonicus 0 1 59310 1304 18622 species 0 Streptococcus salivarius 1 1811193 Streptococcus pantholopis 0 1 1724 species 1303 0 1 Streptococcus oralis species 4689 species 3441 1 0 Streptococcus pneumoniae 1313 1326 species 4069 1 0 Streptococcus acidominimus Streptococcus gordonii 0 1 species 4369 1302 0 1 Streptococcus cristatus 2211 species 45634 197614 6964 species 1 0 Streptococcus pasteurianus 47170 species 1 0 Streptococcus suis 1307 400065 1567 species 0 1 Streptococcus merionis Streptococcus parauberis 0 1 3467 species 1348 1311 Streptococcus agalactiae 0 1 species 20807 7 0 no rank 19205 2608887 1839799 5067 species 0 1 Streptococcus sp. FDAARGOS_192 species 3580 1 0 Streptococcus sp. I-G2 1156431 0 Streptococcus sp. oral taxon 431 1 species 2242 712633 1009 species 0 Streptococcus sp. NPS 308 1 1902136 4221 species 1 0 Streptococcus sp. I-P16 1156433 1759399 species 1626 0 Streptococcus sp. A12 1 0 Streptococcus sp. 'group B' 1 species 1460 1319 1888195 919 species 0 1 Streptococcus himalayensis 1 0 Streptococcus equinus species 4627 1335 40873 species group 0 3 671232 1328 0 Streptococcus anginosus 1 species 26488 1338 4453 species 1 0 Streptococcus intermedius 76860 0 Streptococcus constellatus 1 9932 species 1 0 Streptococcus infantarius species 11828 102684 22928 genus 1 Lactococcus 0 5 18 1357 1796 species Lactococcus raffinolactis 0 1 1366 0 1 Lactococcus piscium species 1729 1364 1363 2539 species 1 0 Lactococcus garvieae 0 1 Lactococcus lactis species 16846 1358 115 81852 74852 family 1 Enterococcaceae 0 20 1350 4143 12 0 Enterococcus 61796 genus 1 37734 1 0 Enterococcus casseliflavus 1369 species 7087 species Enterococcus faecalis 0 1 1351 2005703 Enterococcus wangshanyuanii 0 1 species 2196 32023 species 0 Enterococcus faecium 1 1352 0 3 no rank 4246 2608891 0 1 Enterococcus sp. FDAARGOS_163 species 1333 2060306 2057791 1258 species 0 1 Enterococcus sp. CR-Ec1 2060307 Enterococcus sp. FDAARGOS_375 0 1 species 1655 0 Enterococcus hirae 1 species 3149 1354 2865 species Enterococcus durans 0 1 53345 species 2302 Enterococcus mundtii 0 1 53346 0 Enterococcus thailandicus 1 2416 species 417368 2737 14 0 Vagococcus 3 5386 genus 1 Vagococcus penaei 0 1 2450 species 633807 519472 1 0 Vagococcus teuberi 2922 species 33969 1 Melissococcus 0 2 genus 2672 1 0 1 Melissococcus plutonius 2671 species 33970 genus 4883 1 0 2 Tetragenococcus 8 51668 species 4875 Tetragenococcus halophilus 0 1 51669 263855 1 0 2507 no rank 0 Lactobacillales bacterium 1 2507 species 1993866 0 31 Negativicutes class 1934731 1 909932 103 204 1843488 order 27773 1 0 5 Acidaminococcales 94 909930 family 27569 1 0 Acidaminococcaceae 4 904 207 0 Acidaminococcus 3 27475 genus 1 187327 0 1 Acidaminococcus intestini 18958 species 1 0 Acidaminococcus fermentans 8310 species 905 204 909929 order 1659076 1 Selenomonadales 0 14 4 0 Sporomusaceae 1 family 30860 1843490 59 30801 genus 1 0 3 Pelosinus 99 365348 1 0 Pelosinus fermentans species 16315 365349 2629460 no rank 14387 1 0 484770 1 0 Pelosinus sp. UFO1 species 14387 1843491 237 0 9 Selenomonadaceae 1628012 family 1 41 158846 1590092 genus 1 0 Megamonas 2 158847 Megamonas hypermegale 0 1 species 1590051 264 970 37683 genus 1 0 6 Selenomonas 2637378 3 0 16585 no rank 0 1 Selenomonas sp. oral taxon 136 species 5988 713030 4393 species 0 Selenomonas sp. oral taxon 920 1 1884263 712538 Selenomonas sp. oral taxon 478 0 1 species 6204 971 12968 species 0 Selenomonas ruminantium 1 69823 7866 species 0 1 Selenomonas sputigena Veillonellales 0 11 247779 order 1 1843489 2941 31977 5354 Veillonellaceae 0 10 244838 family 1 32 29465 25281 genus 1 0 3 Veillonella 17781 species 0 1 Veillonella parvula 29466 7468 species 0 1 Veillonella rodentium 248315 0 Negativicoccus 2 1 7184 genus 909928 29 1 0 Negativicoccus massiliensis 7155 species 1702287 62 39948 23997 genus 1 0 2 Dialister 23935 species 0 Dialister pneumosintes 1 39950 genus 183022 1 0 Megasphaera 2 912 906 907 0 1 Megasphaera elsdenii 182110 species 32066 23 0 phylum 81798 81798 class 1 0 Fusobacteriia 23 157 203490 22 0 Fusobacteriales 81641 order 1 203491 204 Leptotrichiaceae 0 10 18509 family 1 1129771 56 0 1 2758 genus 32068 826 2758 species 0 Sebaldella termitidis 1 168808 2 Sneathia 0 2 genus 3321 1 0 Sneathia amnii 1 species 3319 187101 0 Leptotrichia 5 genus 10403 1 32067 11 40542 species 3369 1 0 Leptotrichia buccalis no rank 7023 0 3 2633022 1785996 1 0 Leptotrichia sp. oral taxon 847 species 1880 712368 species 2309 0 Leptotrichia sp. oral taxon 498 1 712357 0 Leptotrichia sp. oral taxon 212 1 2834 species 1 0 1971 genus 34104 species 1971 Streptobacillus moniliformis 0 1 34105 46 203492 1 62928 family 0 11 Fusobacteriaceae genus 59031 1 0 9 Fusobacterium 139 848 species 1870 Fusobacterium necrophorum 0 1 859 851 species 17238 1 0 Fusobacterium nucleatum 1583098 species 6585 0 1 Fusobacterium hwasookii 1 0 Fusobacterium ulcerans species 5489 861 species 4289 Fusobacterium mortiferum 0 1 850 12623 species Fusobacterium periodonticum 0 1 860 856 0 Fusobacterium varium 1 8430 species 849 Fusobacterium gonidiaformans 0 1 species 2368 1 0 genus 3851 167639 167642 0 1 Ilyobacter polytropus 3851 species phylum 4863 12 0 40117 21 203693 class 4863 1 0 12 Nitrospira 189778 78 0 11 Nitrospirales 4842 order 1 189779 27 10 0 Nitrospiraceae 1 4764 family 13 1234 1 2239 genus 0 Nitrospira 5 0 Nitrospira moscoviensis 1 730 species 42253 1325564 0 Nitrospira japonica 1 547 species 330214 0 Nitrospira defluvii 1 552 species 397 species Candidatus Nitrospira inopinata 0 1 1715989 179 genus 1172 0 3 1 0 species group 353 655606 180 0 Leptospirillum ferrooxidans 1 353 species 1 0 432 species group 261385 0 1 Leptospirillum sp. Group II 'CF-1' 432 species 1660083 species group 387 0 1 261386 0 Leptospirillum ferriphilum 1 387 species 178606 28261 0 1 1326 genus 28262 0 1 Thermodesulfovibrio yellowstonii 1326 species 200918 0 42 23758 phylum 21 188708 1 class 23758 42 0 Thermotogae 7 0 Kosmotogales order 1510 1 1643946 2 1643948 4 6 0 Kosmotogaceae 1508 family 1 1 651456 930 genus 1 3 0 Kosmotoga 325 species 1 0 Kosmotoga olearia 651457 1330330 604 species Kosmotoga pacifica 0 1 574 genus 1 Mesotoga 0 2 9 1184396 1184387 Mesotoga prima 0 1 species 565 1643947 1 0 6 Petrotogales order 9571 1 1643949 0 5 9570 family 1967 genus 0 1 1511648 1967 species 0 1 Defluviitoga tunisiensis 1006576 0 1 916 genus 28236 0 1 Petrotoga mobilis species 916 69499 1 genus 6687 Marinitoga 0 3 24 160798 0 1 no rank 3299 2640159 1545835 3299 species 0 1 Marinitoga sp. 1137 Marinitoga piezophila 0 1 3364 species 149715 0 28 Thermotogales order 12656 1 2419 10 Thermotogaceae 0 17 1 6003 family 188709 9 78 2335 3531 genus 1 0 11 Thermotoga Thermotoga naphthophila 0 1 423 species 93930 1095 no rank 4 0 2631113 species 240 1 0 Thermotoga sp. RQ7 126738 species 215 Thermotoga sp. Cell2 0 1 1157947 359 species 1 0 Thermotoga sp. RQ2 126740 1157948 281 species 1 0 Thermotoga sp. 2812B 0 1 Thermotoga maritima 457 species 2336 species 584 0 Thermotoga profunda 1 1508420 93929 0 Thermotoga petrophila 1 species 272 species 335 0 1 Thermotoga caldifontis 1508419 2337 287 species 0 Thermotoga neapolitana 1 1 2463 genus Pseudothermotoga 0 5 57 1643951 119394 Pseudothermotoga thermarum 0 1 381 species 0 Pseudothermotoga lettingae 1 845 species 177758 821 species Pseudothermotoga elfii 0 1 38322 57487 1 0 Pseudothermotoga hypogea species 359 0 10 Fervidobacteriaceae 1 6643 family 1643950 16 Fervidobacterium 0 4 1 1941 genus 2422 6 955 species 1 0 Fervidobacterium nodosum 2424 0 1 Fervidobacterium islandicum species 466 2423 514 species 1 0 Fervidobacterium pennivorans 93466 1 genus 4686 5 0 Thermosipho 48 2420 species 1290 Thermosipho africanus 0 1 2421 934 species Thermosipho melanesiensis 0 1 46541 2 0 no rank 2414 2676525 1437364 1231 species Thermosipho sp. 1070 0 1 1462747 1183 species Thermosipho sp. 1063 0 1 8317 phylum 20 0 57723 101 204432 class 7556 1 17 0 Acidobacteriia Acidobacteriales 0 12 1 6016 order 204433 49 0 Acidobacteriaceae 11 1 family 5967 204434 74 genus 1759 1 Granulicella 0 3 20 940557 940614 species 846 0 Granulicella mallensis 1 940615 0 Granulicella tundricola 1 species 893 1 1211 genus Acidobacterium 0 2 5 33973 0 Acidobacterium capsulatum 1 1206 species 33075 23 392733 1 1928 genus 3 0 Terriglobus 1 0 Terriglobus saanensis species 813 870903 species 1092 Terriglobus roseus 0 1 392734 1 genus 995 2 0 Candidatus Koribacter 7 658061 658062 1 0 Candidatus Koribacter versatilis species 988 1 1439 order 4 0 Solibacterales 24 332160 6 332161 1 family 1415 3 0 Solibacteraceae 5 332162 1 1409 genus 0 Candidatus Solibacter 2 332163 species 1404 1 0 Candidatus Solibacter usitatus 1562566 3 Blastocatellia 0 3 class 761 1 3 458032 1 genus 758 Chloracidobacterium 0 2 458033 1 0 Chloracidobacterium thermophilum species 755 200940 8 0 phylum 3154 1 67799 1 3154 class 0 Thermodesulfobacteria 8 1 order 3153 7 0 Thermodesulfobacteriales 5 188710 1 family 3148 Thermodesulfobacteriaceae 0 6 9 188711 genus 413 1 0 444090 0 Caldimicrobium thiodismutans 1 species 413 1653476 genus 1769 1 0 3 Thermodesulfobacterium 2 1740 species 1196 1 0 Thermodesulfobacterium geofontis 1295609 1741 1 0 Thermodesulfobacterium commune species 571 241192 1 0 genus 957 171695 Thermodesulfatator indicus 0 1 957 species clade 4541944 366 0 1783270 142182 8 0 phylum 3524 1 3524 class 0 Gemmatimonadetes 8 13 219685 Gemmatimonadales 0 7 3511 order 1 219686 112 37 219687 1 family 3399 Gemmatimonadaceae 0 6 1 1519 genus 2 0 Gemmatirosa 10 1706036 861299 species 1509 Gemmatirosa kalamazoonesis 0 1 3 0 Gemmatimonas 1 genus 1843 173479 34 827 species 0 1 Gemmatimonas phototrophica 1379270 173480 species 982 0 Gemmatimonas aurantiaca 1 0 353 clade 4535102 68336 0 8 3028 phylum 1134404 1 class 3028 8 0 Ignavibacteria 7 795747 order 3021 1 0 7 Ignavibacteriales 4 795748 0 3 Ignavibacteriaceae 1 family 1904 795749 2 1 795750 1902 genus 1 0 Ignavibacterium 2 1901 species Ignavibacterium album 0 1 591197 7 1334117 1113 family 1 0 3 Melioribacteraceae Melioribacter 0 2 1106 genus 1 1134403 5 1134405 0 1 Melioribacter roseus 1101 species 0 Bacteroidetes 323 phylum 4519647 1 976 156 1 4220631 class 0 71 Bacteroidia 106 200643 Marinilabiliales 0 11 9222 order 1 1970189 2 558415 2 0 Marinilabiliaceae 3 2407 family 1 2405 genus 1 Alkalitalea 0 2 19 1193324 2386 species Alkalitalea saponilacus 0 1 889453 20 1471398 family 3451 1 Prolixibacteraceae 0 3 genus 3431 1 0 2 Draconibacterium 3 1471399 1 0 Draconibacterium orientale species 3428 1168034 1970190 2 0 family 1439 1 1970191 genus 1439 1 Salinivirga 0 2 1307839 species 1438 1 0 Salinivirga cyanobacteriivorans 1573805 1 2 0 Marinifilaceae 1 family 1923 2060722 genus 1922 0 1 1717717 0 1 Marinifilaceae bacterium SPP2 1922 species 171549 1520 Bacteroidales 0 59 1 4211303 order 1 family 111829 0 2 Odoribacteraceae 8 1853231 283168 genus 111821 1 0 28118 species 111821 0 1 Odoribacter splanchnicus 0 4 Porphyromonadaceae 1 8332 family 171551 18 8314 genus 1 0 3 Porphyromonas 8 836 837 species 6883 0 1 Porphyromonas gingivalis 28123 1423 species 0 1 Porphyromonas asaccharolytica 333046 0 5 no rank 519942 511434 5 2 0 Candidatus Azobacteroides 1 genus 2027 511435 0 Candidatus Azobacteroides pseudotrichonymphae 1 species 2022 517915 genus 3 0 909656 357276 131111 species 1 0 Bacteroides dorei 285543 species 0 Bacteroides vulgatus 1 821 species 101261 Bacteroides salanitronis 0 1 376805 2005523 4 0 Paludibacteraceae 3 1 family 4446 1 4442 genus 2 0 Paludibacter 2 346096 4440 species 0 1 Paludibacter propionicigenes 185300 20 171550 1 family 195444 0 5 Rikenellaceae 239759 82 0 2 Alistipes 1 genus 193277 214856 1 0 Alistipes finegoldii 193195 species 2 0 Mucinivorans 1 2147 genus 1611681 1 2146 species Mucinivorans hirudinis 0 1 1433126 2005520 30424 family 0 6 4 307628 genus 19634 1 0 2 Petrimonas 1642646 0 Petrimonas mucosa 1 species 19630 1 5266 genus Fermentimonas 0 2 4 1784836 5262 species 0 Fermentimonas caenicola 1 1562970 22 294702 genus 5524 1 0 2 Proteiniphilum 1 0 Proteiniphilum saccharofermentans species 5502 1642647 173 2005525 family 1283103 1 0 Tannerellaceae 7 18158 genus 1 0 3 Tannerella 30 195950 12428 species 0 1 Tannerella forsythia 28112 0 1 no rank 5700 2620507 5700 species Tannerella sp. oral taxon HOT-286 0 1 712710 375288 83 3 0 Parabacteroides 1 genus 1264772 421576 species 0 Parabacteroides distasonis 1 823 no rank 843113 1 0 2649774 2025876 Parabacteroides sp. CT06 0 1 species 843113 1 0 1482 no rank 185291 1400053 1 0 Bacteroidales bacterium CF species 1482 171552 13 0 Prevotellaceae 11 183322 family 1 838 358 0 10 Prevotella genus 183309 1 2638335 no rank 3374 1 0 652716 3374 species Prevotella sp. oral taxon 299 0 1 0 1 Prevotella denticola 6373 species 28129 839 species 8944 Prevotella ruminicola 0 1 52227 0 1 Prevotella dentalis 8500 species species 134986 0 Prevotella intermedia 1 28131 76123 Prevotella enoeca 0 1 species 3645 1 0 Prevotella jejuni 5606 species 1177574 28132 species 4628 0 1 Prevotella melaninogenica 589436 species 6895 Prevotella fusca 0 1 2005519 18 Barnesiellaceae 0 3 family 116032 1 1 genus 116014 0 Barnesiella 2 122 397864 397865 species 115892 1 0 Barnesiella viscericola Bacteroidaceae 0 11 1 family 1755427 815 42 1 genus 1755385 0 10 Bacteroides 66833 816 28113 0 Bacteroides heparinolyticus 1 species 83801 165038 species 0 Bacteroides cellulosilyticus 1 246787 817 0 Bacteroides fragilis 1 413819 species species 189468 Bacteroides caccae 0 1 47678 28119 species 75190 1 0 Bacteroides zoogleoformans 1 0 Bacteroides helcogenes 99632 species 290053 species 149482 0 Bacteroides caecimuris 1 1796613 28116 species 154635 0 Bacteroides ovatus 1 357487 species 0 Bacteroides thetaiotaomicron 1 818 Bacteroidetes Order II. Incertae sedis 0 7 1 order 5543 1100069 85 0 Rhodothermaceae 6 family 5458 1 563843 22 1 2578 genus Rhodothermus 0 2 41 29548 1 0 Rhodothermus marinus 2537 species 29549 3 146918 1012 genus 1 0 Salinibacter 2 146919 0 1 Salinibacter ruber 1009 species 1846 no rank 0 1 1196022 Rhodothermaceae bacterium RA 0 1 species 1846 1779382 1 12233 class Chitinophagia 0 16 5 1853228 25 1853229 1 order 12228 15 0 Chitinophagales Chitinophagaceae 0 14 1 12203 family 563835 24 2 79328 1 genus 3591 3 0 Chitinophaga 2029983 0 1 Chitinophagaceae bacterium 13 1145 species 0 Chitinophaga pinensis 1 2444 species 79329 1938 genus 1 0 649460 0 Filimonas lacunae 1 1938 species 477680 8 398041 1 genus 1410 0 Flavisolibacter 2 species 1402 0 Flavisolibacter tropicus 1 1492898 354354 3 0 2 Niastella genus 1662 1 1659 species 0 1 Niastella koreensis 354356 1 2400 genus Niabella 0 3 4 379899 1082 species 0 1 Niabella ginsenosidivorans 1176587 0 1 Niabella soli species 1314 446683 1178 genus 1 0 2 Arachidicoccus 3 1769012 2636138 1175 no rank 1 0 1850526 1 0 Arachidicoccus sp. BS20 1175 species 190213 class 1 0 Flavobacteriia 141 63 117743 1 order 190150 Flavobacteriales 0 140 315 200644 0 10 Blattabacteriaceae 1 3684 family 39782 1 0 9 Blattabacterium 3683 genus 1 34098 23 164514 Blattabacterium punctulatus 0 1 species 282 2647581 no rank 2682 0 6 1 0 Blattabacterium sp. (Blaberus giganteus) 169 species 1186051 39768 Blattabacterium sp. (Mastotermes darwiniensis) 0 1 species 673 Blattabacterium sp. (Periplaneta americana) 0 1 552 species 367488 630 species 0 1 Blattabacterium sp. (Nauphoeta cinerea) 1316444 species 264 0 Blattabacterium sp. (Blatta orientalis) 1 367806 624186 Blattabacterium sp. (Blattella germanica) 0 1 species 394 1653831 species 696 0 1 Blattabacterium cuenoti 1333713 1 0 1110 family 267986 1110 genus 1 0 253245 0 Owenweeksia hongkongensis 1 species 1110 0 21 family 56893 2762318 308865 89 0 6 Elizabethkingia genus 12867 1 1756149 1367 species 0 1 Elizabethkingia genomosp. 3 1117645 5604 species Elizabethkingia anophelis 0 1 1756150 1232 species 0 1 Elizabethkingia genomosp. 4 238 species 2543 0 Elizabethkingia meningoseptica 1 172045 2032 species 0 Elizabethkingia miricola 1 2782232 0 10 20514 no rank 2782228 genus 1555 1 0 1555 species Chryseobacterium taklimakanense 0 1 536441 59732 80 0 Chryseobacterium 9 genus 18959 1 0 Chryseobacterium camelliae 1 species 1615 1265445 species 1645 Chryseobacterium gallinarum 0 1 1324352 3983 species 0 1 Chryseobacterium indologenes 253 2593645 3 0 7316 no rank 1721091 1113 species 0 Chryseobacterium sp. IHB B 17019 1 878220 1 0 Chryseobacterium sp. StRB126 3229 species 2015076 species 2974 0 Chryseobacterium sp. T16E-39 1 0 1 Chryseobacterium glaciei species 2691 1685010 species 1629 0 1 Chryseobacterium piperi 558152 131 28250 genus 19605 1 2 0 Ornithobacterium Ornithobacterium rhinotracheale 0 1 species 19474 28251 1013 962 genus 0 1 1014 0 1 Weeksella virosa 962 species 2945 genus 1 0 Riemerella 2 505 34084 0 1 Riemerella anatipestifer 2440 species 34085 no rank 426 0 2 313602 genus 318 0 1 336809 336810 0 Candidatus Sulcia muelleri 1 318 species 1940138 0 1 108 genus Candidatus Walczuchella monophlebidarum 0 1 species 108 1415657 2 0 family 1089 1853230 332102 6 2 0 Fluviicola 1 1089 genus 1 0 Fluviicola taffensis species 1083 191579 102 0 Flavobacteriaceae 1 family 126245 49546 1837 0 1 genus 1086 153265 101385 species 1086 1 0 Aequorivita sublithincola 4 0 Lacinutrix 4523 genus 1 291183 7 2647285 2 0 2902 no rank 0 1 Lacinutrix sp. Bg11-31 1834 species 2057808 983544 Lacinutrix sp. 5H-3-7-4 0 1 1068 species 1486034 0 Lacinutrix venerupis 1 1614 species 1649495 1673 genus 0 1 no rank 1673 1 0 2622645 1 0 Seonamhaeicola sp. S2-3 1673 species 1936081 1209327 1 0 1784 genus 1803846 0 Flavivirga eckloniae 1 species 1784 2144 genus 0 1 2700084 1850246 0 1 Lutibacter sp. LPB0138 2144 species 15 237 1 17288 genus Flavobacterium 0 9 1492737 species 1802 Flavobacterium gilvum 0 1 0 Flavobacterium psychrophilum 1 species 1221 96345 species 1859 0 1 Flavobacterium indicum 312277 0 1 Flavobacterium commune species 2082 1306519 2548 species 0 1 Flavobacterium columnare 996 55197 1 0 Flavobacterium branchiophilum 1923 species 986 0 1 Flavobacterium johnsoniae 4774 species 1763534 species 1064 0 1 Flavobacterium crassostreae 0 1 1555 genus 261827 1736674 species 1555 0 1 Algibacter alginicilyticus 3943 genus 1 Nonlabens 0 5 4 363408 species 1124 1 0 Nonlabens sediminis 319236 328515 species 679 Nonlabens dokdonensis 0 1 no rank 2136 2 0 2615035 1476901 species 855 0 1 Nonlabens sp. MIC269 2058134 0 1 Nonlabens sp. MB-3u-79 1281 species 2 286104 genus 3953 1 Winogradskyella 0 3 2615021 no rank 3951 2 0 0 Winogradskyella sp. J14-2 1 species 1248 1936080 0 Winogradskyella sp. PG-2 1 species 2703 754409 417127 6 Zunongwangia 0 2 genus 1645 1 Zunongwangia profunda 0 1 1639 species 398743 1 0 genus 738 389486 0 1 738 no rank 2648869 0 1 Sediminicola sp. YIK13 738 species 1453352 4 143222 genus 1390 1 0 Salegentibacter 2 2633436 1386 no rank 0 1 species 1386 0 Salegentibacter sp. T436 1 1729720 1 genus 4955 0 5 Gramella 6 292691 1913577 Gramella sp. LPB0144 0 1 1160 species 2126553 1412 species 0 Gramella sp. SH35 1 411153 1286 species Gramella forsetii 0 1 1486245 1091 species 0 Gramella flava 1 0 Polaribacter 6 genus 10556 1 52959 24 996801 2316 species 0 Polaribacter reichenbachii 1 no rank 5894 3 0 196858 species 2320 Polaribacter sp. ALD11 0 1 2058137 313598 Polaribacter sp. MED152 0 1 species 1794 1529069 1780 species 1 0 Polaribacter sp. BM10 1774273 Polaribacter vadi 0 1 2322 species 61432 0 2 no rank 2999 531844 0 1 Flavobacteriaceae bacterium 3519-10 1278 species 1150389 0 Flavobacteriaceae bacterium UJ101 1 1721 species 2 252306 1025 genus 1 Robiginitalea 0 2 0 1 Robiginitalea biformata 1023 species 252307 104264 19 0 4 Cellulophaga 6106 genus 1 0 1 Cellulophaga algicola 1326 species 59600 2075 species 0 Cellulophaga lytica 1 979 2686 species 0 Cellulophaga baltica 1 76594 179 1016 18306 genus 1 Capnocytophaga 0 15 1848904 species 1660 0 1 Capnocytophaga stomatis 6 0 no rank 6214 2640652 1316593 Capnocytophaga sp. oral taxon 864 0 1 species 1007 1945658 810 species 0 1 Capnocytophaga sp. H4358 209053 1159 species 0 1 Capnocytophaga sp. ChDC OS43 Capnocytophaga sp. oral taxon 878 0 1 species 1285 1316596 species 1070 0 Capnocytophaga sp. oral taxon 323 1 1705617 1945657 Capnocytophaga sp. H2931 0 1 883 species 1017 species 1129 Capnocytophaga gingivalis 0 1 45243 0 Capnocytophaga haemolytica 1 species 934 Capnocytophaga canimorsus 0 1 species 2415 28188 Capnocytophaga leadbetteri 0 1 895 species 327575 species 1056 0 Capnocytophaga ochracea 1 1018 28189 Capnocytophaga cynodegmi 0 1 species 1462 2362 species 0 1 Capnocytophaga sputigena 1019 Tenacibaculum 0 5 1 genus 7940 104267 7 107401 1 0 Tenacibaculum maritimum species 1270 0 1 Tenacibaculum dicentrarchi species 2015 669041 Tenacibaculum todarodis 0 1 species 2069 1850252 584609 0 Tenacibaculum jejuense 1 species 2579 1518147 0 1 1526 genus 1790137 0 Wenyingzhuangia fucanilytica 1 1526 species 1204360 genus 2530 0 1 0 Siansivirga zeaxanthinifaciens 1 species 2530 762954 5 252356 1 5597 genus Maribacter 0 5 Maribacter cobaltidurans 0 1 966 species 1178778 2615042 3 0 4626 no rank 1836467 1587 species Maribacter sp. T28 0 1 313603 0 Maribacter sp. HTCC2170 1 species 1011 1644130 2028 species 0 1 Maribacter sp. 1_2014MBL_MicDiv 112040 1 0 1167 genus 63186 1 0 Zobellia galactanivorans 1167 species 83612 910 genus 0 1 species 910 Psychroflexus torquis 0 1 57029 genus 1497 1 2 0 Lutibacter 3 358023 1622118 Lutibacter profundi 0 1 1494 species 1 0 877 genus 216431 313588 0 Croceibacter atlanticus 1 877 species 5975 genus 1 Myroides 0 5 142 76831 0 Myroides profundi 1 species 1436 480520 no rank 2890 2 0 2642485 1512 species Myroides sp. A21 0 1 1583100 Myroides sp. ZB35 0 1 1378 species 1458492 species 1507 0 1 Myroides odoratimimus 76832 0 1 genus 1474 178469 1 0 Arenibacter algicola 1474 species 616991 1630 genus 1 Muricauda 0 3 7 111500 0 Muricauda lutaonensis 1 909 species 516051 111501 1 0 Muricauda ruestringensis 714 species genus 595 1 0 1176327 0 1 595 no rank 2636237 species 595 1 0 Aureitalea sp. RR4-38 2094025 326319 44 4 0 Dokdonia 1 genus 2895 2 0 no rank 1975 2615033 1379 species 0 1 Dokdonia sp. 4H-3-7-5 983548 313590 0 1 Dokdonia sp. MED134 species 596 326320 0 1 Dokdonia donghaensis species 876 2010 genus 1 0 2 Tamlana 2 393005 2069432 0 1 Tamlana sp. UJ94 2008 species 225842 genus 1230 2 0 2644710 2 0 no rank 1230 1 0 Formosa sp. Hel3_A1_48 629 species 1336795 species 601 0 1 Formosa sp. Hel1_33_131 1336794 genus 886 0 1 336276 no rank 886 0 1 2615019 2058135 species 886 1 0 Olleya sp. Bg11-27 1755828 0 1 family 388 388 genus 0 1 1755829 388 species 0 Ichthyobacterium seriolicida 1 242600 1 class 2903 0 6 Saprospiria 2 1937959 0 Saprospirales 5 1 2901 order 1936988 3 4 1937961 2214 family 1 Haliscomenobacteraceae 0 3 6 2349 2210 genus 1 0 2 Haliscomenobacter 2350 Haliscomenobacter hydrossis 0 1 species 2204 family 684 1 0 89374 1007 0 1 684 genus 1008 684 species 1 0 Saprospira grandis 117747 31 Sphingobacteriia 0 24 1 30497 class 0 23 Sphingobacteriales 1 30466 order 200666 27 30439 family 1 0 22 Sphingobacteriaceae 42 84566 1649482 9 2 0 Pseudopedobacter 1 genus 2225 151895 species 2216 0 1 Pseudopedobacter saltans 84568 0 1 no rank 2343 1986952 1 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 2343 10169 genus 1 0 6 Pedobacter 118 84567 188932 species 2341 Pedobacter cryoconitis 0 1 363852 1807 species 0 1 Pedobacter ginsengisoli 430522 1941 species 1 0 Pedobacter steynii no rank 2047 1 0 2628915 1727164 1 0 Pedobacter sp. PACM 27299 2047 species 984 species 1915 1 0 Pedobacter heparinus 4 0 Mucilaginibacter 4323 genus 1 423349 44 2617802 1 0 no rank 1363 1 0 Mucilaginibacter sp. PAMC 26640 1363 species 1300914 0 1 Mucilaginibacter sp. BJC16-A31 999 species 1234841 1550579 0 1 Mucilaginibacter gotjawali species 1917 929509 1 0 Solitalea 2 1 2547 genus 0 Solitalea canadensis 1 2546 species 995 0 Sphingobacterium 6 genus 8790 1 28453 78 1010 1690 species 0 1 Sphingobacterium mizutaii 7022 no rank 0 4 2609468 0 Sphingobacterium sp. 21 1 1280 species 743722 0 Sphingobacterium sp. ML3W 1 1728 species 1538644 0 Sphingobacterium sp. G1-14 1 species 2059 2003121 1933220 1955 species 0 Sphingobacterium sp. B29 1 0 57 Cytophagia 57471 class 1 768503 133 57338 order 1 0 56 Cytophagales 243 768507 85 1853232 26167 family 1 16 0 Hymenobacteraceae 3 0 Pontibacter 3535 genus 1 323449 4 species 1852 0 1 Pontibacter akesuensis 388950 400092 Pontibacter korlensis 0 1 1679 species 1 4403 genus 0 4 Rufibacter 23 1379908 0 1 Rufibacter tibetensis species 1486 512763 2894 no rank 0 2 2639626 0 Rufibacter sp. DG31D 1 1455 species 1379910 1439 species 1 0 Rufibacter sp. DG15C 1379909 193 89966 18144 genus 1 8 0 Hymenobacter no rank 12816 0 5 2615202 0 1 Hymenobacter sp. APR13 2848 species 1356852 Hymenobacter sp. DG25B 0 1 species 2479 1385664 3271 species 1 0 Hymenobacter sp. PAMC 26628 1484118 1385663 0 1 Hymenobacter sp. DG25A 2031 species species 2187 Hymenobacter sp. PAMC 26554 0 1 1484116 1411621 Hymenobacter sedentarius 0 1 species 3020 species 2115 0 Hymenobacter swuensis 1 1446467 1853234 1 Persicobacteraceae 0 3 1 family 2667 Persicobacter 0 2 1 genus 2666 59740 2 2664020 2664 no rank 0 1 1085624 1 0 Persicobacter sp. JZB09 2664 species 0 Bernardetiaceae 2 1 family 2022 1937968 4 2018 genus 0 1 1937972 999 Bernardetia litoralis 0 1 2018 species 1775 family 2 0 2762301 10 869806 1 1775 genus 0 2 Marivirga 0 1 Marivirga tractuosa species 1765 1006 661 family 3 0 1501348 273135 1 0 genus 251 2641185 no rank 251 1 0 0 Cardinium endosymbiont of Encarsia pergandiella 1 251 species 249402 281119 1 0 2 Candidatus Amoebophilus 1 410 genus Candidatus Amoebophilus asiaticus 0 1 409 species 281120 563798 9 8 0 Cyclobacteriaceae 1 family 5626 232244 genus 1226 0 1 species 1226 1 0 Belliella baltica 232259 1303 genus 1 2 0 Echinicola 1 390846 390884 1302 species 0 Echinicola vietnamensis 1 895 genus 1 0 Algoriphagus 2 1 246875 1727163 0 1 Algoriphagus sp. M8-2 species 894 0 2 2193 genus 68288 Cyclobacterium marinum 0 1 species 1191 104 0 Cyclobacterium amurskyense 1 1002 species 320787 200667 6 Flammeovirgaceae 0 4 family 3965 1 340671 0 1 1505 no rank 0 1 Flammeovirgaceae bacterium 311 species 1505 1257021 Flammeovirga 0 2 1 2454 genus 59739 3 2637820 no rank 2451 1 0 0 Flammeovirga sp. MY04 1 species 2451 1191459 89373 27 0 Cytophagaceae 17 14212 family 1 861914 11 2 0 Fibrella 1 genus 833 2620963 822 no rank 1 0 822 species 0 Fibrella sp. ES10-3-2-2 1 1834519 105 4 0 2 Runella genus 1761 1 106 0 1 Runella slithyformis species 1757 2 319458 1310 genus 1 2 0 Leadbetterella 0 Leadbetterella byssophila 1 species 1308 316068 1 genus 1181 Cytophaga 0 2 10 978 Cytophaga hutchinsonii 0 1 1171 species 985 120831 12 Dyadobacter 0 2 genus 2332 1 0 Dyadobacter fermentans 1 2320 species 94254 1 6768 genus 0 Spirosoma 6 8 107 2057025 1572 species 0 Spirosoma sp. HA7 1 1379870 1 0 Spirosoma radiotolerans 1145 species 0 Spirosoma montaniterrae 1 1311 species 1178516 1211326 0 1 Spirosoma aerolatum 1303 species 1 0 Spirosoma rigui 1429 species 564064 22 0 12427 phylum 1090 191410 33 0 Chlorobia 22 class 12427 1 191411 200 0 21 Chlorobiales 1 12394 order 20 0 Chlorobiaceae 1 12194 family 191412 71 genus 979 1 0 2 Chloroherpeton 2 100715 977 species 1 0 Chloroherpeton thalassium 100716 33 256319 3435 genus 1 Chlorobaculum 0 4 Chlorobaculum limnaeum 0 1 1416 species 274537 species 898 0 1 Chlorobaculum tepidum 1097 274539 1088 species 0 1 Chlorobaculum parvum 8 0 no rank 4851 274493 0 Chlorobium 5 genus 3456 1 1091 9 0 Chlorobium chlorochromatii 1 643 species 337090 1096 0 1 Chlorobium phaeobacteroides species 1305 1094 species 615 0 1 Chlorobium phaeovibrioides Chlorobium limicola 0 1 species 884 1092 1099 8 0 Pelodictyon 3 1395 genus 1 0 1 Pelodictyon phaeoclathratiforme species 608 34090 species 779 Pelodictyon luteolum 0 1 1100 12 1101 genus 2858 1 5 0 Prosthecochloris 0 1 Prosthecochloris aestuarii 774 species 1102 0 3 no rank 2072 2632826 281093 species 665 Prosthecochloris sp. GSB1 0 1 1974213 969 species 1 0 Prosthecochloris sp. HL-130-GSB 0 Prosthecochloris sp. CIB 2401 1 438 species 1868325 0 1 phylum 1014 456828 1014 genus 0 1 456826 species 1014 Candidatus Cloacimonas acidaminovorans 0 1 456827 65842 phylum 2304 0 4 1 204430 class 2304 1 4 0 Fibrobacteria 218872 2 Fibrobacterales 0 3 1 order 2303 204431 5 0 2 Fibrobacteraceae 1 2301 family 832 2296 genus 0 1 833 species 2296 0 Fibrobacter succinogenes 1 658 clade 0 4 2498710 67814 0 4 phylum 658 2 693071 658 class 1 0 4 Caldisericia 0 3 order 656 693072 693073 8 3 0 Caldisericaceae 1 656 family 0 Caldisericum 2 genus 648 1 693074 7 693075 641 species Caldisericum exile 0 1 1 0 327 phylum 2138240 2138243 0 1 327 class 1 0 order 327 2138246 family 327 1 0 2138247 genus 327 0 1 68335 species 327 0 Coprothermobacter proteolyticus 1 35786 203691 57 0 79356 phylum 0 Spirochaetia 57 1 79356 class 203692 180 1643686 14 0 7 Brachyspirales 1 27800 order 3797 143786 27786 family 1 0 Brachyspiraceae 6 29521 3454 Brachyspira 0 5 1 genus 23989 52584 species 8031 1 0 Brachyspira pilosicoli 159 6022 species 1 0 Brachyspira hyodysenteriae 3283 species 0 Brachyspira murdochii 1 84378 3199 species Brachyspira intermedia 0 1 84377 5286 order 8 0 1643688 170 2 0 Leptospiraceae 8 family 5286 1 genus 429 1 0 338321 29510 1 0 Turneriella parva 429 species 171 3 6 0 Leptospira genus 4855 1 172 586 species Leptospira biflexa 0 1 28452 Leptospira alstonii 0 1 species 503 1 0 Leptospira santarosai 546 species 28183 173 species 2452 Leptospira interrogans 0 1 174 765 species Leptospira borgpetersenii 0 1 136 1030 0 Spirochaetales 41 1 46090 order 16 0 family 8111 1643685 1 4786 genus 0 Borrelia 8 31 138 44449 species 537 1 0 Borrelia recurrentis species 623 1 0 Borrelia parkeri 141 0 1 Borrelia duttonii species 781 40834 142 849 species Borrelia turicatae 0 1 0 Borrelia hermsii 1 434 species 140 0 1 Borrelia miyamotoi 1058 species 47466 143 species 473 0 1 Borrelia anserina 0 8 Borreliella 3325 genus 1 64895 117 720 species 0 1 Borreliella burgdorferi 139 29518 0 Borreliella afzelii 1 561 species 399 species 1 0 Borrelia mayonii 1674146 64897 0 1 Borreliella bissettii species 153 644 species 1 0 Borreliella garinii 29519 240 species 0 1 Borreliella bavariensis 664662 62088 0 1 Borreliella valaisiana species 491 880 137 family 36949 1 0 Spirochaetaceae 24 933 157 1 27517 genus Treponema 0 12 Treponema primitia 0 1 species 946 88058 221027 0 1 Treponema putidum species 3647 species 1268 0 1 Treponema azotonutricium 150829 81028 species 1710 1 0 Treponema brennaborense 167 species 11829 1 0 Treponema succinifaciens species 120 0 Treponema paraluiscuniculi 1 53435 no rank 3150 0 1 2638727 3150 species Treponema sp. OMZ 838 0 1 1539298 Treponema caldarium 0 1 species 1280 215591 409322 Treponema pedis 0 1 species 817 158 species 1701 0 Treponema denticola 1 1 0 Treponema pallidum 116 species 160 1616789 1 Salinispira 0 2 genus 1289 1 Salinispira pacifica 0 1 1288 species 1307761 399320 6 4 0 Sphaerochaeta 1 genus 3713 1131707 1 0 Sphaerochaeta pleomorpha species 1153 1131703 0 Sphaerochaeta globosa 1 1406 species 1 0 Sphaerochaeta coccoides 1148 species 273376 146 16 0 Spirochaeta 3 1 genus 2400 154 1 0 Spirochaeta thermophila species 1171 0 1 Spirochaeta africana 1213 species 46355 2 1911556 1 1150 genus 0 Sediminispirochaeta 2 55206 1148 species 1 0 Sediminispirochaeta smaragdinae 508458 0 11 phylum 12294 35 649775 1 12294 class Synergistia 0 11 10 0 Synergistales order 12259 1 649776 43 3886 649777 1 12216 family Synergistaceae 0 9 0 2 Thermanaerovibrio genus 481 1 81461 3 81462 0 1 Thermanaerovibrio acidaminovorans 478 species 0 1 837 genus 81466 0 Aminobacterium colombiense 1 species 837 81468 508459 20 0 Cloacibacillus 2 genus 6064 1 1197717 species 6044 0 Cloacibacillus porcorum 1 336260 1 0 580 genus 0 1 Thermovirga lienii species 580 336261 1 49894 1 genus 368 0 Acetomicrobium 2 97477 Acetomicrobium mobile 0 1 367 species 200930 phylum 4766 0 8 1 4766 class 0 Deferribacteres 8 4 68337 191393 24 0 Deferribacterales 7 order 4762 1 0 6 Deferribacteraceae 4738 family 1 191394 25 53572 0 1 1799 genus 0 1 Deferribacter desulfuricans 1799 species 197162 117999 937 genus 1 0 species 937 0 Denitrovibrio acetiphilus 1 118000 0 1 genus 1203 545865 477976 0 Calditerrivibrio nitroreducens 1 species 1203 2351 2 2 0 Flexistipes genus 774 1 2352 species 772 0 Flexistipes sinusarabici 1 8924 phylum 0 21 200783 class 8924 1 0 21 Aquificae 11 187857 0 4 Desulfurobacteriales 2108 order 1 1485951 15 3 0 2093 family 558314 1846 genus 0 1 64159 species 1846 Desulfurobacterium thermolithotrophum 0 1 64160 171868 2 2 0 Thermovibrio genus 247 1 0 1 Thermovibrio ammonificans species 245 228745 8 32069 6805 order 1 16 0 Aquificales 64898 family 3626 10 0 2 0 genus 323 75905 136094 0 1 Thermocrinis albus 150 species species 173 1 0 Thermocrinis ruber 75906 939 1 0 500 genus 940 species 500 0 Hydrogenobacter thermophilus 1 56 168657 1 genus 2612 6 0 Hydrogenobaculum 2622382 2556 no rank 0 5 0 Hydrogenobaculum sp. Y04AAS1 1 species 628 380749 547144 Hydrogenobaculum sp. HO 0 1 species 482 482 species 1 0 Hydrogenobaculum sp. SN 547146 547145 0 Hydrogenobaculum sp. SHO 1 species 482 547143 Hydrogenobaculum sp. 3684 0 1 species 482 191 genus 1 0 2713 species 191 0 1 Aquifex aeolicus 63363 5 224027 family 2691 1 Hydrogenothermaceae 0 4 182899 genus 689 1 0 689 species 1 0 Persephonella marina 309805 212790 0 2 1997 genus 309806 804 species 0 1 Sulfurihydrogenibium azorense 2619248 0 1 no rank 1193 436114 0 1 Sulfurihydrogenibium sp. YO3AOP1 species 1193 1 0 480 no rank 90150 genus 480 1 0 412592 412593 0 Thermosulfidibacter takaii 1 species 480 1 phylum 3238 7 0 Elusimicrobia 3 74152 1 0 no rank 716 99260 0 uncultured Termite group 1 bacterium 1 716 species 167965 641853 class 1013 1 0 641854 1013 order 0 1 641876 1 0 1013 family 423604 1 0 1013 genus 423605 1013 species Elusimicrobium minutum 0 1 0 4 class 1506 447830 2 1783344 order 1506 1 4 0 Endomicrobiales family 1504 3 0 1783343 1 1408194 1 genus 1504 3 0 Endomicrobium 755 species 0 1 Endomicrobium proavitum 1408281 1408204 748 species 0 1 Candidatus Endomicrobium trichonymphae 42785 clade 89 0 1783257 17 74201 1 phylum 10972 0 26 Verrucomicrobia 417295 0 2 1769 no rank species 900 0 1 Verrucomicrobia bacterium IMCC26134 1637999 species 869 Verrucomicrobia bacterium 0 1 2026799 class 524 0 4 1955630 4 0 Methylacidiphilales order 524 1 717963 1 523 family 3 0 717964 3 0 Methylacidiphilum 1 523 genus 511745 3 511746 species 218 1 0 Methylacidiphilum infernorum 591154 302 species 0 1 Methylacidiphilum fumariolicum 37 203494 1 3636 class 0 6 Verrucomicrobiae 39 48461 1 3599 order 0 5 Verrucomicrobiales 3560 family 1 4 0 Akkermansiaceae 46 1647988 239934 41 3 0 Akkermansia 1 genus 3514 1 0 Akkermansia muciniphila 1922 species 239935 species 1551 0 Akkermansia glycaniphila 1 1679444 2 0 202 class 134549 2 134550 1 genus 202 0 2 Candidatus Xiphinematobacter 2648876 0 1 200 no rank 0 Candidatus Xiphinematobacter sp. Idaho Grape 1 200 species 1704307 414999 106 0 11 Opitutae 1 4824 class 415000 158 0 7 Opitutales 1 4283 order 72 134623 4125 family 1 6 0 Opitutaceae 278955 1 0 1583 no rank Opitutaceae bacterium TAV5 0 1 1583 species 794903 genus 1282 1 2 0 Lacunisphaera 55 1961799 1227 species 1 0 Lacunisphaera limnophila 1838286 5 178440 1 1188 genus 0 2 Opitutus 1 0 Opitutus terrae species 1183 107709 1 order 435 3 0 Puniceicoccales 2 415001 415002 family 433 0 2 13 442430 genus 433 1 0 Coraliomargarita 2 395922 420 species 1 0 Coraliomargarita akajimensis 204428 phylum 4719 0 22 4719 class 1 22 0 Chlamydiia 11 204429 1 2669 order 14 0 Chlamydiales 3 51291 13 0 Chlamydiaceae 1 2666 family 809 9 1113537 0 12 no rank 2657 0 Chlamydia 12 1 genus 2657 810 2 83555 species 257 1 0 Chlamydia abortus 85991 0 1 Chlamydia pecorum species 110 1457153 0 1 Chlamydia gallinacea species 604 1 0 Chlamydia muridarum 141 species 83560 504 species 1 0 Chlamydia pneumoniae 83558 83554 Chlamydia psittaci 0 1 species 150 813 73 species 0 1 Chlamydia trachomatis 83559 0 Chlamydia suis 1 128 species 292 species 1 0 Chlamydia avium 1457141 0 Chlamydia caviae 1 species 154 83557 83556 species 242 0 1 Chlamydia felis 1963360 0 7 order 2039 1 family 283 Simkaniaceae 0 2 2 92712 genus 281 1 0 34093 83561 281 species 1 0 Simkania negevensis family 273 0 2 92714 2 71666 273 genus 1 0 2 Waddlia 71667 271 species 0 1 Waddlia chondrophila 1 family 1483 3 0 Parachlamydiaceae 1 92713 83551 0 1 1007 genus 1 0 Parachlamydia acanthamoebae 1007 species 83552 282132 475 genus 0 1 389348 species 475 0 1 Candidatus Protochlamydia naegleriophila 134625 5 0 779 phylum 1921781 2 0 5 Kiritimatiellae 1 class 779 1921782 5 0 Kiritimatiellales 4 1 777 order 4 1921783 772 family 1 0 3 Kiritimatiellaceae 2 0 Kiritimatiella 1 768 genus 1921784 18 1307763 Kiritimatiella glycovorans 0 1 750 species 5 203682 1 12930 phylum 33 0 Planctomycetes 2517206 0 2 946 class 2 0 Candidatus Brocadiales order 946 1 1127829 5 family 941 0 1 1127830 380738 0 1 941 genus 941 species 0 Candidatus Kuenenia stuttgartiensis 1 174633 16 666505 class 2436 1 0 7 Phycisphaerae 1 order 1340 Phycisphaerales 0 4 47 666506 666507 32 3 0 Phycisphaeraceae family 1293 1 3 666508 genus 1261 1 2 0 Phycisphaera Phycisphaera mikurensis 0 1 species 1258 547188 2 0 1080 order 2483366 2483367 family 1080 0 2 2 0 genus 1080 2483368 1941349 0 Phycisphaerae bacterium ST-PulAB-D4 1 species 543 1940790 0 1 Phycisphaerae bacterium L21-RPul-D3 species 537 203683 80 23 0 Planctomycetia 1 class 9543 2691354 order 1443 3 0 2691357 2 0 1035 family 424 genus 1 0 123 125 species 424 1 0 Pirellula staleyi 265488 611 genus 0 1 265606 611 species 1 0 Rhodopirellula baltica 2691358 0 1 family 408 genus 408 1 0 1676125 1331910 species 408 1 0 Thermogutta terrifontis 136 112 4676 order 1 Planctomycetales 0 9 Planctomycetaceae 0 8 1 family 4540 126 42 1936111 6 2 0 Fuerstia genus 997 1 1891926 1 0 Fuerstia marisgermanicae 991 species 1649480 591 genus 0 1 591 species 1 0 Planctopirus limnophila 120 0 3 Planctomyces 1 genus 2251 118 19 2648843 no rank 2232 2 0 species 943 Planctomyces sp. SH-PL14 0 1 1632864 1 0 Planctomyces sp. SH-PL62 species 1289 1636152 659 genus 1 0 1649490 Rubinisphaera brasiliensis 0 1 species 659 119 2691356 2571 order 7 0 24 1763524 1 family 2571 Isosphaeraceae 0 7 6 1763521 1 1279 genus 0 Paludisphaera 2 Paludisphaera borealis 0 1 1273 species 1387353 1 genus 640 0 Singulisphaera 2 6 466152 634 species Singulisphaera acidiphila 0 1 466153 genus 628 1 2 0 Isosphaera 7 127 128 1 0 Isosphaera pallida species 621 0 3 773 order 2691355 773 family 1 3 0 Gemmataceae 2 1914233 113 7 2 0 Gemmata genus 771 1 2622970 no rank 764 1 0 1630693 Gemmata sp. SH-PL17 0 1 764 species 256845 0 3 13385 phylum 1313211 16 0 3 Lentisphaeria class 13385 1 278082 1617 0 Victivallales 2 1 order 13369 11752 no rank 1 0 1674876 2094242 11752 species Victivallales bacterium CCUG 44730 0 1 0 2 1128 no rank 2323 1783234 2 0 1128 clade 95901 clade 966 1 0 2497643 class 966 0 1 2497644 966 order 0 1 966 family 1 0 2497645 1551504 genus 966 1 0 species 966 0 Candidatus Babela massiliensis 1 673862 phylum 162 1 0 95818 162 no rank 1 0 1895827 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 1 species 162 2056494 68297 2783 phylum 3 0 203486 class 2783 3 0 order 2783 3 0 203487 203488 3 0 family 2783 2 13 1 genus 2783 Dictyoglomus 0 3 14 species 1371 Dictyoglomus thermophilum 0 1 513050 1410 species 0 Dictyoglomus turgidum 1 1930617 4 0 phylum 1429 1429 class 1 Calditrichae 0 4 1 1962850 1962852 1 Calditrichales 0 3 1 1428 order 1962854 0 2 family 1427 1427 genus 1 Caldithrix 0 2 1 187144 1 0 Caldithrix abyssi species 1426 187145