members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 18498 4576 15800461 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 name 0 1 29925 249 2157 superkingdom 0 26944 204 phylum 28890 0 0 102 2290931 clade 15348 19 Methanomicrobia 9334 44 class 224756 1 0 13 Methanosarcinales 6942 order 94695 27 0 1 6586 Methanosarcinaceae 2 1 0 23 2206 family 404 0 2175 genus 2 Methanohalophilus halophilus 242 species 2177 1 0 2176 species 1 0 162 Methanohalophilus mahii 12 4944 Methanosarcina 13 2207 genus 1 0 0 2209 species 1 722 Methanosarcina mazei 0 species 2215 1 Methanosarcina vacuolata 388 0 1 species 2208 Methanosarcina barkeri 1006 271 Methanosarcina acetivorans 0 2214 species 1 Methanosarcina horonobensis 460 species 418008 1 0 Methanosarcina lacustris 387 0 species 170861 1 1086 4 no rank 2644672 0 388 Methanosarcina sp. Kolksee 1434099 species 1 0 Methanosarcina sp. WH1 209 0 1 species 1434102 species 1434100 1 0 Methanosarcina sp. MTP4 211 1 1434103 species 0 278 Methanosarcina sp. WWM596 38027 species 1 0 349 Methanosarcina siciliae 2210 species 1 0 263 Methanosarcina thermophila 299 2 2225 genus 0 1 species 2226 0 Methanococcoides methylutens 145 0 29291 species 1 154 Methanococcoides burtonii 0 1 101191 genus 269 species 101192 1 0 Methanomethylovorans hollandica 269 0 1 genus 196136 232 232 Methanosalsum zhilinae 0 39669 species 1 228 1 genus 2321 0 species 2322 1 0 Methanohalobium evestigatum 228 0 1 genus 2220 2 Methanolobus 208 1 Methanolobus psychrophilus 207 1 species 420950 0 family 143067 3 0 1 7 Methanosaetaceae 343 336 0 2 2222 genus 0 1 2223 species 172 Methanothrix soehngenii 0 species 301375 1 Methanosaeta harundinacea 164 338 Methanocellales 2 1 0 3 570264 order 0 family 570265 2 336 0 genus 570266 2 336 0 1 species 1175444 Methanocella conradii 112 Methanocella arvoryzae 224 0 species 1175445 1 1 0 13 order 2191 Methanomicrobiales 2035 2 243 1 family 88404 0 243 1 genus 2192 0 243 Methanocorpusculum labreanum 0 83984 species 1 841 0 5 2194 family Methanoculleus 662 12 1 0 4 genus 45989 0 1 species 2198 Methanoculleus marisnigri 183 254 Methanoculleus bourgensis 0 1 83986 species 213 2619537 no rank 1 0 213 Methanoculleus sp. MAB1 1 86622 species 0 0 genus 230355 1 179 0 species 54120 1 Methanolacinia petrolearia 179 Methanoregulaceae 715 1 0 1 family 1198451 5 3 genus 395331 1 0 2 Methanoregula 475 0 882104 species 1 348 Methanoregula formicica species 358766 1 0 Methanoregula boonei 125 1 genus 475087 0 239 Methanosphaerula palustris 239 0 species 475088 1 234 0 1 196137 family 234 genus 2202 1 0 234 Methanospirillum hungatei 1 2203 species 0 0 1 class 183963 58 Halobacteria 6014 27 order 1644060 18 0 1 16 Natrialbales 2074 1 0 17 family 1644061 Natrialbaceae 2058 25 2 250 Halopiger 387342 genus 2 0 1 0 1 species 387343 Halopiger xanaduensis 248 192 genus 203193 1 0 0 229731 species 1 192 Halobiforma lacisalsi 1 1269201 genus 0 188 188 0 1 2621923 no rank Salinarchaeum sp. Harcht-Bsk1 188 0 species 1333523 1 189 0 29287 genus 1 29288 species 1 0 189 Natronococcus occultus 104 1 genus 2256 0 1 species 44930 0 Natronobacterium gregoryi 104 2 353799 genus 1 0 5 237 Halostagnicola 0 353800 species 1 232 Halostagnicola larsenii 3 321 Natrinema 3 88723 genus 1 0 1 no rank 2622230 0 183 1 species 406552 0 Natrinema sp. J7-2 183 species 69525 1 0 Natrinema pellirubrum 135 370 Haloterrigena 1 1 0 3 121871 genus 165 Haloterrigena daqingensis 588898 species 1 0 204 Haloterrigena turkmenica 0 62320 species 1 182 Natrialba 1 1 0 2 63742 genus 181 Natrialba magadii 13769 species 1 0 30 Halobacteriales 2284 order 2235 24 0 1 1544 Haloarculaceae 8 0 1 1963268 family 14 1 Natronomonas 229 genus 63743 3 0 1 1 416273 species 0 140 Natronomonas moolapensis Natronomonas pharaonis 88 0 species 2257 1 210 1073987 genus 1 0 210 0 no rank 2648975 1 210 Halorientalis sp. IM1011 1932360 species 1 0 2 146825 genus 0 336 species 430914 1 0 Halorhabdus tiamatea 137 199 Halorhabdus utahensis 146826 species 1 0 2 203135 genus 1 0 3 141 Halomicrobium 138 Halomicrobium mukohataei 57705 species 1 0 1 0 5 2237 genus 620 Haloarcula 10 species 2238 1 0 Haloarcula marismortui 203 0 1 2624677 no rank 140 140 Haloarcula sp. CBA1115 1 1592728 species 0 0 1 1932004 species 92 Haloarcula taiwanensis 0 1 species 51589 Haloarcula hispanica 175 family 2236 9 0 1 2 Halobacteriaceae 710 genus 2239 4 0 1 3 Halobacterium 431 1 1407499 species 0 131 Halobacterium hubeiense 0 1 2668073 no rank 163 163 Halobacterium sp. DL1 751944 species 1 0 Halobacterium salinarum 134 0 species 2242 1 0 1 1980514 genus 88 Halodesulfurarchaeum formicicum 88 1 species 1873524 0 Halanaeroarchaeum 64 6 0 1 genus 1656823 2 1604004 species 1 0 58 Halanaeroarchaeum sulfurireducens 125 1 332246 genus 0 0 1 species 413810 Halalkalicoccus jeotgali 125 1644055 order 15 0 1 11 1629 Haloferacales 1963271 family 6 0 1 5 693 Halorubraceae 0 1 1644057 genus 239 1 755307 species 0 239 Salinigranum rubrum 306 Halorubrum 8 0 1 56688 genus 3 109 Halorubrum lacusprofundi 0 1 2247 species 189 Halorubrum trapanicum 1 29284 species 0 1 1209988 genus 0 143 0 1 species 1048396 Halopenitus persicus 143 1 0 7 family 1644056 Haloferacaceae 846 1 0 1 2251 genus 4 510 Haloferax 4 Haloferax mediterranei 142 0 1 species 2252 Haloferax gibbonsii 211 1 species 35746 0 153 Haloferax volcanii 0 1 2246 species 1 60846 genus 0 155 155 Halogeometricum borinquense 60847 species 1 0 0 1 genus 293431 180 Haloquadratum walsbyi 180 species 293091 1 0 1 2678336 no rank 0 79 0 species 756883 1 halophilic archaeon DL31 79 Archaeoglobi 706 10 1 0 10 class 183980 2 Archaeoglobales 696 9 order 2231 1 0 Archaeoglobaceae 694 1 1 0 8 family 2232 0 1 54260 genus 122 Ferroglobus placidus 122 0 species 54261 1 398 2233 genus 4 0 71 Archaeoglobus fulgidus 0 2234 species 1 species 1316941 1 0 Archaeoglobus sulfaticallidus 127 Archaeoglobus profundus 93 0 1 species 84156 107 Archaeoglobus veneficus 1 58290 species 0 173 190818 genus 2 0 0 565033 species 1 131 Geoglobus acetivorans 42 Geoglobus ahangari 1 113653 species 0 1 0 40 class 183968 Thermococci 3285 5 order 2258 39 0 1 28 Thermococcales 3280 Thermococcaceae 3252 3 1 0 38 family 2259 60 0 83867 genus 1 Palaeococcus pacificus 60 species 971279 1 0 423 0 7 2260 genus 2261 species 1 0 99 Pyrococcus furiosus 0 1 53953 species 72 Pyrococcus horikoshii 0 1 species 1008460 Pyrococcus yayanosii 55 0 2629106 no rank 2 79 342949 species 1 0 42 Pyrococcus sp. NA2 37 Pyrococcus sp. ST04 1 1183377 species 0 species 29292 1 0 Pyrococcus abyssi 59 59 Pyrococcus kukulkanii 1609559 species 1 0 2766 Thermococcus 25 1 0 29 2263 genus species 342948 1 0 Thermococcus onnurineus 32 Thermococcus pacificus 50 1 species 71998 0 73 Thermococcus cleftensis 1 163003 species 0 110 Thermococcus gammatolerans 187878 species 1 0 species 277988 1 0 Thermococcus thioreducens 82 0 1 species 582419 Thermococcus paralvinellae 178 Thermococcus profundus 99 1 species 49899 0 0 1 species 72803 Thermococcus siculi 128 species 55802 1 0 Thermococcus barophilus 166 91 Thermococcus chitonophagus 1 54262 species 0 1 110164 species 0 59 Thermococcus guaymasensis 0 1 species 195522 Thermococcus nautili 71 Thermococcus litoralis 88 species 2265 1 0 Thermococcus sibiricus 120 0 1 species 172049 0 1 species 311400 Thermococcus kodakarensis 64 0 71997 species 1 82 Thermococcus gorgonarius 90 Thermococcus barossii 1 54077 species 0 0 1712654 species 1 58 Thermococcus piezophilus Thermococcus radiotolerans 119 species 187880 1 0 2264 species 1 0 122 Thermococcus celer 200 Thermococcus eurythermalis 1 1505907 species 0 584 2627626 no rank 6 0 38 Thermococcus sp. P6 0 122420 species 1 Thermococcus sp. 2319x1 100 1 species 1674923 0 Thermococcus sp. EXT12c 120 0 species 2016361 1 1 1042877 species 0 113 Thermococcus sp. 4557 0 2008440 species 1 102 Thermococcus sp. 5-4 Thermococcus sp. AM4 111 0 1 species 246969 Thermococcus peptonophilus 75 0 species 53952 1 0 36 2283794 clade 5934 0 13 183939 class 2561 2561 order 2182 13 0 0 2183 family 5 1487 0 genus 155862 1 197 197 Methanothermococcus okinawensis 0 1 155863 species 1290 genus 2184 4 0 1 2187 species 0 183 Methanococcus vannielii species 42879 1 0 Methanococcus aeolicus 139 1 species 2188 0 Methanococcus voltae 144 39152 species 1 0 824 Methanococcus maripaludis 1074 8 196117 family 0 175 0 1 genus 196119 Methanotorris igneus 175 0 1 species 2189 899 Methanocaldococcus 1 0 1 196118 genus 7 1 species 83171 0 Methanocaldococcus fervens 97 0 2190 species 1 181 Methanocaldococcus jannaschii 195 1 no rank 2641196 0 Methanocaldococcus sp. FS406-22 195 species 644281 1 0 46 Methanocaldococcus infernus 67760 species 1 0 0 73913 species 1 116 Methanocaldococcus vulcanius 0 1 1301915 species 263 Methanocaldococcus bathoardescens 4 3373 Methanobacteria 183925 class 23 0 1 2158 order 22 0 3369 2159 family 21 0 3263 1 Methanobacterium 1183 genus 2160 8 0 1 210 Methanobacterium subterraneum 59277 species 1 0 0 1 118062 species 130 Methanobacterium congolense 2627676 no rank 2 0 305 212 Methanobacterium sp. MZ-A1 1911685 species 1 0 Methanobacterium sp. MB1 93 species 1379702 1 0 1 species 868131 0 Methanobacterium paludis 203 Methanobacterium formicicum 144 species 2162 1 0 Methanobacterium lacus 190 0 species 877455 1 1 0 5 145260 genus 147 Methanothermobacter 1 145263 species 1 0 38 Methanothermobacter marburgensis species 145262 1 0 Methanothermobacter thermautotrophicus 16 35 0 1 2631116 no rank 0 species 866790 1 Methanothermobacter sp. CaT2 35 0 1 species 145261 Methanothermobacter wolfeii 57 233 0 1 2316 genus 0 1 species 2317 Methanosphaera stadtmanae 233 0 1 genus 2172 7 Methanobrevibacter 1700 3 294 Methanobrevibacter millerae 1 230361 species 0 Methanobrevibacter smithii 339 0 1 species 2173 0 1 294671 species 284 Methanobrevibacter olleyae 395 Methanobrevibacter ruminantium 0 1 83816 species no rank 2638681 2 0 385 Methanobrevibacter sp. AbM4 170 species 224719 1 0 0 1 species 1609968 Methanobrevibacter sp. YE315 215 1 2178 family 0 106 106 0 genus 2179 1 Methanothermus fervidus 106 species 2180 1 0 0 16 clade 2283796 1671 14 183967 class 1 0 11 1524 Thermoplasmata 767 order 2301 7 0 1747776 family 1 0 132 0 genus 1747777 1 132 132 Cuniculiplasma divulgatum 0 1 1673428 species 0 family 90142 2 271 0 2 genus 74968 271 1 97393 species 0 155 Ferroplasma acidarmanus Ferroplasma acidiphilum 116 0 species 74969 1 1 no rank 1919231 0 189 Thermoplasmatales archaeon BRNA1 189 1 species 1054217 0 1 family 46630 0 88 0 1 46631 genus 88 88 Picrophilus torridus 1 82076 species 0 2 46659 family 0 87 87 0 2 2302 genus 0 1 2303 species 55 Thermoplasma acidophilum Thermoplasma volcanium 32 0 1 species 50339 1 Methanomassiliicoccales 578 order 1235850 5 0 1 438 2 family 1577788 0 167 0 1 genus 1607807 167 Candidatus Methanoplasma termitum 1 1577791 species 0 0 1080709 genus 1 271 0 species 1406512 1 Candidatus Methanomassiliicoccus intestinalis 271 0 family 2517203 2 139 Candidatus Methanomethylophilus 139 9 1 0 2 genus 1291539 1 species 1291540 0 Candidatus Methanomethylophilus alvus 130 168 1 no rank 1234666 0 0 1495144 species 1 168 methanogenic archaeon ISO4-H5 1803510 clade 2 0 147 0 2 379546 genus 147 1 no rank 2633939 0 51 1 species 673860 0 Aciduliprofundum sp. MAR08-339 51 species 379547 1 0 Aciduliprofundum boonei 96 0 1783275 clade 44 2947 phylum 51967 1 0 30 30 genus 498845 1 0 30 Candidatus Korarchaeum cryptofilum 0 498846 species 1 2116 28889 phylum 34 0 0 34 183924 class 2116 0 1 order 2266 12 Thermoproteales 525 2 7 family 2267 1 0 10 Thermoproteaceae 298 115 genus 164450 2 0 Vulcanisaeta distributa 53 0 1 species 164451 Vulcanisaeta moutnovskia 62 0 species 985052 1 77 genus 2270 2 0 0 1 2271 species 26 Thermoproteus tenax 51 Thermoproteus uzoniensis 184117 species 1 0 76886 genus 1 0 51 species 76887 1 0 Caldivirga maquilingensis 51 0 1 genus 2276 45 0 2277 species 1 45 Pyrobaculum islandicum 225 0 4 family 114378 225 2268 genus 4 0 Thermofilum uzonense 38 species 1550241 1 0 74 Thermofilum adornatus 0 1365176 species 1 0 2269 species 1 24 Thermofilum pendens 1 species 1483572 0 Thermofilum carboxyditrophus 89 0 2 order 871006 85 871007 family 1 0 29 0 genus 105850 1 29 242703 species 1 0 29 Acidilobus saccharovorans 56 0 255472 family 1 56 1 genus 200414 0 species 200415 1 0 Caldisphaera lagunensis 56 8 order 2281 0 1036 1036 8 family 118883 0 101 genus 41980 2 0 19 Metallosphaera sedula 0 43687 species 1 0 1 species 1006005 Metallosphaera cuprina 82 0 12914 genus 1 95 95 Acidianus hospitalis 1 563177 species 0 94 0 1 genus 2100760 94 Sulfolobus solfataricus 0 2287 species 1 559 2284 genus 3 0 393 Sulfolobus islandicus 1 43080 species 0 89 0 1 no rank 2641160 0 1891280 species 1 89 Sulfolobus sp. A20 Sulfolobus acidocaldarius 77 0 1 species 2285 187 0 1 genus 69655 187 Sulfolobus tokodaii 111955 species 1 0 0 12 114380 order 470 family 2272 8 0 327 45 0 54258 genus 2 0 54259 species 1 18 Ignicoccus islandicus 160233 species 1 0 27 Ignicoccus hospitalis 67 0 1 54253 genus 0 54254 species 1 67 Thermosphaera aggregans 56 0 2 genus 2273 15 Desulfurococcus amylolyticus 94694 species 1 0 1 species 2275 0 Desulfurococcus mucosus 41 138 2 2279 genus 0 0 species 2280 1 Staphylothermus marinus 60 Staphylothermus hellenicus 78 0 species 84599 1 0 1 genus 477695 21 0 1 species 1200300 Thermogladius calderae 21 4 2307 family 0 143 1 genus 54247 0 42 Hyperthermus butylicus 42 species 54248 1 0 2 genus 54251 1 0 1 Pyrolobus 23 Pyrolobus fumarii 22 0 species 54252 1 1 genus 2308 0 78 0 1 species 1273541 Pyrodictium delaneyi 78 801 0 651137 phylum 9 31932 order 3 0 388 3 338190 family 0 388 220 genus 338191 2 0 Candidatus Nitrosopumilus sediminis 102 0 1 species 1229909 0 1 species 1580092 Candidatus Nitrosopumilus adriaticus 118 0 genus 1993653 1 168 Candidatus Nitrosomarinus catalina 168 0 species 1898749 1 218 0 651142 no rank 3 75 1 1593364 genus 0 75 Candidatus Nitrosopelagicus brevis 1 1410606 species 0 143 0 2 1825023 genus Candidatus Nitrosotenuis sp. AQ6f 82 0 1 species 1846278 61 Candidatus Nitrosotenuis cloacae 1603555 species 1 0 1 195 Nitrososphaeria 3 1643678 class 1 0 order 1033996 1 0 178 0 1 family 1033997 178 178 genus 497726 1 0 Nitrososphaera viennensis 178 1 species 1034015 0 1 1968909 order 0 16 16 0 1 family 1968910 genus 498374 1 0 16 1 species 2045011 0 Candidatus Nitrosocaldus islandicus 16 1783276 clade 1 0 34 1 1801631 phylum 0 34 34 1 genus 2490204 0 0 1 species 1920749 Candidatus Micrarchaeota archaeon Mia14 34 33 Bacteria 15752038 4295 superkingdom 2 1 0 72455 0 23 phylum 32066 Fusobacteriia 72455 21 1 0 23 class 203490 Fusobacteriales 72434 54 0 1 order 203491 22 5931 Leptotrichiaceae 4 1 0 9 1129771 family 1028 0 1 168808 genus 1028 Sneathia amnii 187101 species 1 0 32067 genus 5 0 1 2 2962 Leptotrichia 746 Leptotrichia buccalis 40542 species 1 0 3 no rank 2633022 0 2214 553 Leptotrichia sp. oral taxon 498 0 712368 species 1 species 1785996 1 0 Leptotrichia sp. oral taxon 847 608 Leptotrichia sp. oral taxon 212 1053 1 species 712357 0 1082 genus 32068 1 0 826 species 1 0 1082 Sebaldella termitidis 855 genus 34104 1 0 Streptobacillus moniliformis 855 0 species 34105 1 203492 family 12 0 1 22 66449 Fusobacteriaceae 0 1 genus 167639 2 Ilyobacter 1014 2 1012 Ilyobacter polytropus 0 1 167642 species 1 0 9 848 genus 65413 Fusobacterium 51 species 849 1 0 Fusobacterium gonidiaformans 675 species 860 1 0 Fusobacterium periodonticum 2306 Fusobacterium varium 8145 1 species 856 0 0 1 1583098 species 1242 Fusobacterium hwasookii 831 Fusobacterium mortiferum 1 850 species 0 0 1 species 859 Fusobacterium necrophorum 580 0 species 851 1 Fusobacterium nucleatum 3870 47713 Fusobacterium ulcerans 0 1 861 species 57 phylum 203691 0 25450 57 203692 class 1 0 35 25450 Spirochaetia order 1643686 6 0 3989 Brachyspiraceae 3989 77 0 1 family 143786 6 5 genus 29521 1 0 115 Brachyspira 3912 0 84377 species 1 813 Brachyspira intermedia species 159 1 0 Brachyspira hyodysenteriae 1264 52584 species 1 0 1141 Brachyspira pilosicoli Brachyspira murdochii 579 1 species 84378 0 128 Spirochaetales 19219 42 order 136 1 0 24 137 family 1 0 98 17284 Spirochaetaceae 0 1 genus 399320 4 Sphaerochaeta 2110 10 834 Sphaerochaeta globosa 0 1131703 species 1 0 species 1131707 1 Sphaerochaeta pleomorpha 633 1 species 273376 0 Sphaerochaeta coccoides 633 0 1 genus 1911556 2 Sediminispirochaeta 782 2 780 Sediminispirochaeta smaragdinae 0 1 55206 species 3 146 genus 1 0 3 1178 Spirochaeta Spirochaeta thermophila 601 0 species 154 1 species 46355 1 0 Spirochaeta africana 574 1 0 12 genus 157 Treponema 12434 1047 species 221027 1 0 Treponema putidum 1334 Treponema pedis 533 species 409322 1 0 Treponema succinifaciens 4328 1 species 167 0 1 215591 species 0 560 Treponema caldarium 0 158 species 1 847 Treponema denticola 80 Treponema paraluiscuniculi 0 1 53435 species 0 species 81028 1 Treponema brennaborense 1066 802 Treponema azotonutricium 0 1 150829 species 82 Treponema pallidum 0 160 species 1 926 no rank 2638727 1 0 1 1539298 species 0 926 Treponema sp. OMZ 838 88058 species 1 0 829 Treponema primitia 2 Salinispira 682 2 genus 1616789 1 0 species 1307761 1 0 Salinispira pacifica 680 0 1 family 1643685 17 Borreliaceae 1807 1 Borrelia 943 4 0 1 genus 138 8 0 species 47466 1 Borrelia miyamotoi 250 Borrelia duttonii 102 0 species 40834 1 143 species 1 0 108 Borrelia anserina 0 44449 species 1 92 Borrelia recurrentis species 140 1 0 Borrelia hermsii 113 1 141 species 0 131 Borrelia parkeri 143 Borrelia turicatae 0 1 142 species 74 Borreliella 863 genus 64895 8 0 1 0 species 1674146 1 Borrelia mayonii 71 0 1 species 62088 Borreliella valaisiana 65 0 species 64897 1 Borreliella bissettii 70 0 1 29519 species 226 Borreliella garinii Borreliella bavariensis 134 species 664662 1 0 1 29518 species 0 103 Borreliella afzelii 0 139 species 1 120 Borreliella burgdorferi 2207 0 1643688 order 8 170 family 8 0 1 1 2207 Leptospiraceae genus 338321 1 0 228 228 Turneriella parva 1 29510 species 0 1978 Leptospira 4 1 0 6 171 genus 414 Leptospira borgpetersenii 0 174 species 1 28183 species 1 0 387 Leptospira santarosai 1 species 172 0 Leptospira biflexa 233 Leptospira alstonii 351 0 1 species 28452 589 Leptospira interrogans 0 1 173 species 1930617 phylum 4 0 706 1 Calditrichae 706 4 class 1962850 1 0 2 705 Calditrichales 3 1962852 order 1 0 703 0 1962854 family 2 Caldithrix 703 2 1 0 2 genus 187144 Caldithrix abyssi 701 0 species 187145 1 8321 41 phylum 200918 0 Thermotogae 8321 3 0 1 class 188708 41 2419 order 27 0 1 2 5245 Thermotogales 0 9 family 1643950 2092 6 833 Fervidobacterium 4 2422 genus 1 0 Fervidobacterium nodosum 223 0 1 species 2424 376 Fervidobacterium pennivorans 0 93466 species 1 228 Fervidobacterium islandicum 1 2423 species 0 0 1 2420 genus 5 1259 Thermosipho 4 364 Thermosipho africanus 2421 species 1 0 611 2 2676525 no rank 0 1437364 species 1 0 307 Thermosipho sp. 1070 1462747 species 1 0 304 Thermosipho sp. 1063 280 Thermosipho melanesiensis 1 46541 species 0 Thermotogaceae 3151 9 0 1 family 188709 17 45 2033 Thermotoga 2335 genus 11 0 1 Thermotoga neapolitana 217 species 2337 1 0 0 2631113 no rank 4 832 0 126740 species 1 191 Thermotoga sp. RQ2 0 1 species 1157948 Thermotoga sp. 2812B 227 0 species 126738 1 Thermotoga sp. RQ7 217 0 1 1157947 species 197 Thermotoga sp. Cell2 Thermotoga profunda 218 0 species 1508420 1 179 Thermotoga petrophila 0 93929 species 1 0 1 1508419 species 133 Thermotoga caldifontis Thermotoga naphthophila 229 species 93930 1 0 Thermotoga maritima 180 species 2336 1 0 5 genus 1643951 1 0 12 Pseudothermotoga 1109 373 Pseudothermotoga thermarum 0 1 119394 species 1 species 57487 0 Pseudothermotoga hypogea 163 0 1 177758 species 295 Pseudothermotoga lettingae species 38322 1 0 Pseudothermotoga elfii 266 2 Petrotogales 2176 order 1643947 8 0 1 2174 0 7 1643949 family 1 0 3 160798 genus 1437 Marinitoga 4 0 1 149715 species 686 Marinitoga piezophila 0 2640159 no rank 1 747 1 1545835 species 0 747 Marinitoga sp. 1137 1 0 2 genus 28236 Petrotoga 346 3 1 69499 species 0 343 Petrotoga mobilis 1511648 genus 2 0 1 2 391 Defluviitoga 0 species 1006576 1 Defluviitoga tunisiensis 389 5 1643946 order 0 897 1 0 5 family 1643948 Kosmotogaceae 897 11 328 0 1184396 genus 1 0 1184387 species 1 328 Mesotoga prima 558 Kosmotoga 2 1 0 3 651456 genus Kosmotoga olearia 263 species 651457 1 0 Kosmotoga pacifica 293 1 species 1330330 0 57723 phylum 20 0 4253 4 380 Blastocatellia 3 1562566 class 1 0 458032 genus 2 0 1 7 376 Chloracidobacterium Chloracidobacterium thermophilum 369 1 species 458033 0 class 204432 17 0 1 18 Acidobacteriia 3873 0 1 order 332160 4 Solibacterales 737 7 730 Solibacteraceae 12 0 1 332161 family 3 2 genus 332162 1 0 10 Candidatus Solibacter 718 332163 species 1 0 708 Candidatus Solibacter usitatus 48 3118 Acidobacteriales 204433 order 12 0 1 0 1 family 204434 11 Acidobacteriaceae 3070 37 0 1 392733 genus 3 1043 Terriglobus 3 0 species 392734 1 Terriglobus roseus 613 species 870903 1 0 Terriglobus saanensis 427 658061 genus 2 0 1 2 505 Candidatus Koribacter Candidatus Koribacter versatilis 503 0 species 658062 1 882 Granulicella 4 0 1 940557 genus 3 0 1 940615 species 411 Granulicella tundricola 1 940614 species 0 467 Granulicella mallensis 2 genus 33973 1 0 2 Acidobacterium 603 33075 species 1 0 601 Acidobacterium capsulatum 13 40117 phylum 0 2648 Nitrospira 2648 5 1 0 13 class 203693 1 0 12 189778 order 2643 Nitrospirales 16 0 1 189779 family 11 2627 Nitrospiraceae 15 0 1 28261 genus 2 333 Thermodesulfovibrio 4 0 28262 species 1 329 Thermodesulfovibrio yellowstonii 5 genus 1234 1 0 4 Nitrospira 1286 213 Candidatus Nitrospira inopinata 1715989 species 1 0 species 330214 1 0 Nitrospira defluvii 316 Nitrospira japonica 336 species 1325564 1 0 Nitrospira moscoviensis 417 0 1 species 42253 0 genus 179 3 993 0 1 species group 655606 318 Leptospirillum ferrooxidans 318 0 1 species 180 363 1 261385 species group 0 363 Leptospirillum sp. Group II 'CF-1' 0 1660083 species 1 261386 species group 1 0 312 312 Leptospirillum ferriphilum 0 178606 species 1 18631 clade 1783257 86 0 0 3 phylum 256845 2434 1313211 class 3 0 1 8 2434 Lentisphaeria 2426 Victivallales 128 0 1 278082 order 2 0 1 no rank 1674876 2298 0 species 2094242 1 Victivallales bacterium CCUG 44730 2298 phylum 203682 34 0 1 5 Planctomycetes 6729 Phycisphaerae 1159 1 1 0 7 class 666505 4 666506 order 1 0 27 464 Phycisphaerales 4 Phycisphaeraceae 437 3 family 666507 1 0 genus 666508 2 0 1 2 Phycisphaera 433 0 1 547188 species 431 Phycisphaera mikurensis 694 2 2483366 order 0 694 family 2483367 2 0 genus 2483368 2 0 694 Phycisphaerae bacterium ST-PulAB-D4 306 1 species 1941349 0 1940790 species 1 0 388 Phycisphaerae bacterium L21-RPul-D3 4 2517206 class 0 357 5 Candidatus Brocadiales 357 4 order 1127829 1 0 1 0 3 family 1127830 Candidatus Brocadiaceae 352 1 351 Candidatus Kuenenia 1 0 1 380738 genus 2 350 Candidatus Kuenenia stuttgartiensis 0 174633 species 1 1 0 22 class 203683 Planctomycetia 5208 15 order 2691354 5 0 674 229 2691358 family 1 0 229 0 genus 1676125 1 0 1 species 1331910 Thermogutta terrifontis 229 4 family 2691357 0 445 1 0 2 265488 genus 276 Rhodopirellula 1 0 1 265606 species 275 Rhodopirellula baltica 1 169 Pirellula 123 genus 2 0 1 0 125 species 1 168 Pirellula staleyi 0 2 2691355 order 367 367 0 1914233 family 2 1 367 Gemmata 2 113 genus 1 0 1 no rank 2622970 0 366 1 1630693 species 0 366 Gemmata sp. SH-PL17 1510 2691356 order 6 0 12 Isosphaeraceae 1510 6 family 1763524 1 0 425 Singulisphaera 1 1 0 2 466152 genus 466153 species 1 0 424 Singulisphaera acidiphila 2 genus 1763521 1 0 12 Paludisphaera 706 1387353 species 1 0 694 Paludisphaera borealis 127 genus 1 0 367 0 128 species 1 367 Isosphaera pallida 2642 Planctomycetales 55 0 1 112 order 8 1 0 7 126 family 2587 Planctomycetaceae 21 288 1649490 genus 1 0 0 species 119 1 Rubinisphaera brasiliensis 288 402 1649480 genus 1 0 Planctopirus limnophila 402 0 species 120 1 1 genus 1936111 0 453 Fuerstia marisgermanicae 453 0 1 species 1891926 Planctomyces 1423 10 0 1 genus 118 3 0 2648843 no rank 2 1413 0 species 1636152 1 Planctomyces sp. SH-PL62 920 493 Planctomyces sp. SH-PL14 0 1 1632864 species 25 phylum 74201 1 0 3 Verrucomicrobia 7227 0 class 1955630 4 423 6 Methylacidiphilales 423 order 717963 4 0 1 Methylacidiphilaceae 417 1 1 0 3 family 717964 416 2 511745 genus 0 0 species 511746 1 Methylacidiphilum infernorum 198 218 Methylacidiphilum fumariolicum 1 591154 species 0 417295 no rank 2 0 1043 1 2026799 species 0 649 Verrucomicrobia bacterium 394 Verrucomicrobia bacterium IMCC26134 1 1637999 species 0 5 class 203494 0 3109 0 1 48461 order 5 3109 Verrucomicrobiales 11 1 0 4 1647988 family 3098 Akkermansiaceae 22 6 Akkermansia 3076 3 genus 239934 1 0 1 1679444 species 0 976 Akkermansia glycaniphila Akkermansia muciniphila 2094 species 239935 1 0 91 0 2 class 134549 91 Candidatus Xiphinematobacter 1 0 1 134550 genus 2 1 no rank 2648876 0 90 Candidatus Xiphinematobacter sp. Idaho Grape 90 0 species 1704307 1 Opitutae 2558 11 1 0 11 class 414999 Puniceicoccales 379 3 1 0 3 order 415001 376 415002 family 2 0 3 376 Coraliomargarita 442430 genus 2 0 1 0 395922 species 1 373 Coraliomargarita akajimensis order 415000 7 0 1 27 Opitutales 2168 Opitutaceae 2141 13 1 0 6 family 134623 603 Opitutus 1 0 1 178440 genus 2 0 1 species 107709 Opitutus terrae 602 4 578 Lacunisphaera 1961799 genus 2 0 1 1838286 species 1 0 574 Lacunisphaera limnophila 0 1 278955 no rank 947 0 1 794903 species 947 Opitutaceae bacterium TAV5 1713 204428 phylum 20 0 Chlamydiia 1713 3 0 1 class 204429 20 6 1963360 order 0 504 2 family 92713 0 267 genus 282132 1 0 87 0 species 389348 1 Candidatus Protochlamydia naegleriophila 87 0 1 genus 83551 180 0 species 83552 1 Parachlamydia acanthamoebae 180 3 92714 family 1 0 1 157 Waddliaceae 1 156 Waddlia 2 71666 genus 1 0 Waddlia chondrophila 155 0 species 71667 1 0 1 92712 family 80 80 0 1 genus 34093 0 1 species 83561 Simkania negevensis 80 51291 order 13 0 1206 1206 Chlamydiaceae 1 1 0 13 809 family 1205 no rank 1113537 12 0 3 Chlamydia 1205 12 genus 810 1 0 Chlamydia muridarum 136 1 species 83560 0 0 1 1457141 species 99 Chlamydia avium 0 1 species 1457153 Chlamydia gallinacea 130 Chlamydia suis 79 1 species 83559 0 0 1 83557 species 116 Chlamydia caviae 1 species 813 0 Chlamydia trachomatis 56 Chlamydia felis 65 0 1 species 83556 Chlamydia psittaci 198 species 83554 1 0 Chlamydia abortus 123 1 species 83555 0 0 1 species 83558 Chlamydia pneumoniae 74 Chlamydia pecorum 126 0 1 species 85991 528 4 phylum 134625 0 3 Kiritimatiellae 528 4 class 1921781 1 0 Kiritimatiellales 525 8 0 1 order 1921782 3 0 family 1921783 2 517 21 Kiritimatiella 517 genus 1921784 2 0 1 496 Kiritimatiella glycovorans 1 1307763 species 0 192 0 2 2138240 phylum 192 2138243 class 2 0 1 0 2 2138246 order 192 Coprothermobacterales 1 191 2138247 family 1 0 191 0 1 68335 genus Coprothermobacter proteolyticus 191 0 species 35786 1 no rank 2323 2 0 235 235 2 1783234 clade 0 183 0 clade 95901 1 183 1 class 2497643 0 order 2497644 1 0 183 183 2497645 family 1 0 183 0 1 1551504 genus species 673862 1 0 Candidatus Babela massiliensis 183 52 1 phylum 95818 0 52 no rank 1895827 1 0 0 1 species 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 52 221 1 clade 2498710 0 221 0 67814 phylum 1 221 693071 class 1 0 221 0 693072 order 1 221 0 1 family 693073 221 0 1 genus 693074 Caldisericum exile 221 1 species 693075 0 4 200938 phylum 0 630 0 118001 class 4 630 189769 order 4 0 1 6 630 Chrysiogenales 7 624 Chrysiogenaceae 3 189770 family 1 0 0 1 393029 genus 2 617 Desulfurispirillum 2 species 936456 1 0 Desulfurispirillum indicum 615 10431674 350 clade 1783270 0 5 phylum 65842 0 863 1 0 5 204430 class 863 Fibrobacteria 1 862 Fibrobacterales 1 0 1 218872 order 4 family 204431 3 0 1 1 Fibrobacteraceae 861 Fibrobacter 860 1 1 0 2 genus 832 1 833 species 0 859 Fibrobacter succinogenes 1730 8 142182 phylum 0 6 1730 Gemmatimonadetes 219685 class 8 0 1 1 0 7 order 219686 Gemmatimonadales 1724 36 family 219687 6 0 1 16 Gemmatimonadaceae 1688 3 763 Gemmatirosa 1706036 genus 2 0 1 760 Gemmatirosa kalamazoonesis 0 861299 species 1 Gemmatimonas 909 2 1 0 3 genus 173479 0 1 173480 species 475 Gemmatimonas aurantiaca 1 species 1379270 0 Gemmatimonas phototrophica 432 1 456828 phylum 0 377 genus 456826 1 0 377 species 456827 1 0 Candidatus Cloacimonas acidaminovorans 377 336 clade 68336 0 10428704 0 21 1090 phylum 7303 class 191410 21 0 1 25 Chlorobia 7303 191411 order 20 0 1 85 7278 Chlorobiales Chlorobiaceae 7193 30 0 1 family 191412 19 304 0 1 100715 genus 304 Chloroherpeton thalassium 0 100716 species 1 4 256319 genus 1 0 7 2132 Chlorobaculum Chlorobaculum tepidum 541 0 species 1097 1 803 Chlorobaculum limnaeum 274537 species 1 0 781 Chlorobaculum parvum 274539 species 1 0 0 8 no rank 274493 3030 2065 Chlorobium 7 1 0 5 1091 genus 1094 species 1 0 369 Chlorobium phaeovibrioides Chlorobium chlorochromatii 238 0 1 species 337090 1 1092 species 0 490 Chlorobium limicola species 1096 1 0 Chlorobium phaeobacteroides 961 0 1 1099 genus 3 965 Pelodictyon 3 species 34090 1 0 Pelodictyon phaeoclathratiforme 326 0 species 1100 1 Pelodictyon luteolum 636 1101 genus 5 0 1 3 1697 Prosthecochloris 1335 0 3 2632826 no rank 609 Prosthecochloris sp. GSB1 0 281093 species 1 Prosthecochloris sp. CIB 2401 453 0 1 species 1868325 Prosthecochloris sp. HL-130-GSB 273 1 species 1974213 0 species 1102 1 0 Prosthecochloris aestuarii 359 5 1134404 phylum 0 1253 2 1253 Ignavibacteria 795747 class 5 0 1 4 1251 Ignavibacteriales 4 795748 order 1 0 606 0 family 1334117 1 0 1134403 genus 1 606 Melioribacter roseus 606 0 1 species 1134405 0 1 family 795749 2 Ignavibacteriaceae 641 3 638 1 795750 genus 0 638 Ignavibacterium album 1 591197 species 0 10420148 Bacteroidetes 26 0 1 976 phylum 310 36015 Cytophagia 42 1 0 54 768503 class 80 Cytophagales 35973 order 768507 53 0 1 family 2762301 2 0 621 2 621 Marivirga 869806 genus 2 0 1 Marivirga tractuosa 619 0 species 1006 1 0 1 89373 family 15 10383 Cytophagaceae 49 genus 978 2 0 1 6 Cytophaga 1070 species 985 1 0 Cytophaga hutchinsonii 1064 0 1 120831 genus 1297 1297 Dyadobacter fermentans 94254 species 1 0 Spirosoma 4632 16 1 0 6 genus 107 Spirosoma sp. HA7 1110 0 1 species 2057025 Spirosoma montaniterrae 884 1 species 1178516 0 0 species 1211326 1 Spirosoma aerolatum 831 0 1379870 species 1 863 Spirosoma radiotolerans 0 1 species 564064 Spirosoma rigui 928 1600 0 1 105 genus species 106 1 0 Runella slithyformis 1600 genus 861914 2 0 1 2 Fibrella 951 949 0 no rank 2620963 1 species 1834519 1 0 Fibrella sp. ES10-3-2-2 949 1 0 2 319458 genus 784 Leadbetterella 2 1 316068 species 0 782 Leadbetterella byssophila 321 2 family 1501348 0 155 1 genus 273135 0 155 2641185 no rank 1 0 1 species 249402 0 Cardinium endosymbiont of Encarsia pergandiella 155 1 genus 281119 0 166 281120 species 1 0 166 Candidatus Amoebophilus asiaticus 1216 0 1853234 family 2 1 0 2 59740 genus 1216 Persicobacter 4 0 1 2664020 no rank 1212 Persicobacter sp. JZB09 1212 species 1085624 1 0 8 563798 family 1 0 6 3169 Cyclobacteriaceae 0 232244 genus 1 554 species 232259 1 0 Belliella baltica 554 2 Echinicola 803 2 genus 390846 1 0 1 390884 species 0 801 Echinicola vietnamensis genus 246875 1 0 478 478 Algoriphagus sp. M8-2 1 1727163 species 0 Cyclobacterium 1328 7 1 0 3 genus 68288 736 Cyclobacterium amurskyense 320787 species 1 0 Cyclobacterium marinum 585 species 104 1 0 Hymenobacteraceae 16985 50 0 1 family 1853232 16 89966 genus 8 0 1 59 11246 Hymenobacter 0 1411621 species 1 1624 Hymenobacter sedentarius 0 1 species 1446467 Hymenobacter swuensis 1584 0 5 no rank 2615202 7979 0 1385663 species 1 1095 Hymenobacter sp. DG25A 1605 Hymenobacter sp. PAMC 26554 1 1484116 species 0 1484118 species 1 0 1853 Hymenobacter sp. PAMC 26628 0 1356852 species 1 2023 Hymenobacter sp. APR13 0 1385664 species 1 1403 Hymenobacter sp. DG25B 4 Rufibacter 3099 4 genus 1379908 1 0 512763 species 1 0 1080 Rufibacter tibetensis 0 2 no rank 2639626 2015 0 1 1379909 species 1078 Rufibacter sp. DG15C 937 Rufibacter sp. DG31D 1 1379910 species 0 2590 Pontibacter 9 0 1 323449 genus 3 species 388950 1 0 Pontibacter akesuensis 1361 1220 Pontibacter korlensis 0 400092 species 1 2526 Flammeovirgaceae 16 0 1 200667 family 4 2 Flammeovirga 1096 genus 59739 2 0 1 1094 0 no rank 2637820 1 0 1 1191459 species 1094 Flammeovirga sp. MY04 340671 no rank 1 0 1414 1 1257021 species 0 1414 Flammeovirgaceae bacterium 311 1 0 3 1937968 family 672 Bernardetiaceae 3 1 669 Bernardetia 2 1937972 genus 1 0 0 1 999 species 668 Bernardetia litoralis 1853228 class 15 0 1 3 9329 Chitinophagia 9326 Chitinophagales 12 0 1 1853229 order 14 21 9314 Chitinophagaceae 563835 family 13 0 1 1 0 2 genus 354354 Niastella 1459 14 Niastella koreensis 1445 0 species 354356 1 0 1 79328 genus 3 2648 Chitinophaga 1 0 1 2029983 species 853 Chitinophagaceae bacterium 13 Chitinophaga pinensis 1794 species 79329 1 0 1 0 2 genus 649460 Filimonas 1493 4 1489 Filimonas lacunae 1 477680 species 0 0 1 genus 1769012 1053 1053 0 2636138 no rank 1 Arachidicoccus sp. BS20 1053 0 1 species 1850526 718 0 398041 genus 1 Flavisolibacter tropicus 718 0 1 species 1492898 1 0 3 379899 genus 1922 Niabella 1 Niabella soli 1118 1 species 446683 0 0 1176587 species 1 803 Niabella ginsenosidivorans Bacteroidetes Order II. Incertae sedis 3451 65 1 0 7 order 1100069 23 Rhodothermaceae 3386 family 563843 6 0 1 1 no rank 1196022 0 1240 1240 Rhodothermaceae bacterium RA 1779382 species 1 0 1 Salinibacter 518 2 genus 146918 1 0 517 Salinibacter ruber 1 146919 species 0 1 0 2 genus 29548 Rhodothermus 1605 15 0 species 29549 1 Rhodothermus marinus 1590 65 class 200643 1 0 69 Bacteroidia 10266747 8 1970189 order 0 5128 2 992 Marinilabiliaceae 558415 family 2 0 1 1 1193324 genus 0 990 1 889453 species 0 990 Alkalitalea saponilacus 729 Salinivirgaceae 4 1 0 2 1970190 family 0 1 genus 1970191 725 1 species 1307839 0 Salinivirga cyanobacteriivorans 725 1 0 2 family 1573805 Marinifilaceae 1235 8 1 genus 2060722 0 1227 species 1717717 1 0 Marinifilaceae bacterium SPP2 1227 0 1 family 1471398 2 Prolixibacteraceae 2172 4 1 genus 1471399 0 2168 0 species 1168034 1 Draconibacterium orientale 2168 1 0 56 order 171549 Bacteroidales 10261550 406 73 2515334 Bacteroidaceae 11 815 family 1 0 816 genus 10 0 1 45269 2515261 Bacteroides Bacteroides thetaiotaomicron 434171 species 818 1 0 0 1 species 246787 Bacteroides cellulosilyticus 222634 0 species 28113 1 Bacteroides heparinolyticus 130546 species 28119 1 0 Bacteroides zoogleoformans 107518 1 species 28116 0 Bacteroides ovatus 569824 0 1 290053 species 176013 Bacteroides helcogenes 0 1 species 817 Bacteroides fragilis 417545 Bacteroides caccae 221520 species 47678 1 0 Bacteroides caecimuris 190221 1 species 1796613 0 0 1 family 171552 11 Prevotellaceae 131085 9 140 131076 Prevotella 10 838 genus 1 0 0 1 species 28129 Prevotella denticola 5022 3127 Prevotella enoeca 0 1 76123 species 0 species 52227 1 Prevotella dentalis 11178 3425 Prevotella melaninogenica 1 28132 species 0 1 28131 species 0 93033 Prevotella intermedia Prevotella ruminicola 6512 1 species 839 0 0 1 589436 species 4210 Prevotella fusca 0 1 1177574 species 2943 Prevotella jejuni 0 no rank 2638335 1 1486 Prevotella sp. oral taxon 299 1486 0 1 species 652716 6544933 5 333046 no rank 0 Candidatus Azobacteroides 599 3 0 1 genus 511434 2 0 species 511435 1 Candidatus Azobacteroides pseudotrichonymphae 596 genus 909656 3 0 6544334 0 1 species 357276 Bacteroides dorei 828070 Bacteroides vulgatus 5645042 0 species 821 1 0 1 376805 species 71222 Bacteroides salanitronis 90 731482 Tannerellaceae 2005525 family 7 0 1 97 Parabacteroides 714020 3 genus 375288 1 0 Parabacteroides distasonis 295219 species 823 1 0 418704 0 1 no rank 2649774 Parabacteroides sp. CT06 418704 0 species 2025876 1 genus 195950 3 0 1 23 Tannerella 17372 5401 0 1 no rank 2620507 species 712710 1 0 Tannerella sp. oral taxon HOT-286 5401 Tannerella forsythia 11948 0 1 species 28112 0 2 2005523 family 2296 Paludibacter 2296 5 0 1 genus 346096 2 Paludibacter propionicigenes 2291 species 185300 1 0 56192 1 1853231 family 0 0 1 genus 283168 56192 0 1 species 28118 Odoribacter splanchnicus 56192 Rikenellaceae 154680 19 1 0 5 family 171550 1585 Mucinivorans 1 1 0 2 1611681 genus Mucinivorans hirudinis 1584 0 1 species 1433126 0 1 genus 239759 2 Alistipes 153076 41 0 1 species 214856 Alistipes finegoldii 153035 0 1 2005519 family 3 103429 Barnesiellaceae 15 2 genus 397864 1 0 55 Barnesiella 103414 397865 species 1 0 103359 Barnesiella viscericola 0 5 family 2005520 10883 2 genus 294702 1 0 53 Proteiniphilum 4916 0 species 1642647 1 Proteiniphilum saccharofermentans 4863 5 Petrimonas 4038 genus 307628 2 0 1 4033 Petrimonas mucosa 0 1 1642646 species 1929 0 genus 1784836 1 1929 Fermentimonas caenicola 1562970 species 1 0 0 1 family 171551 4 Porphyromonadaceae 9548 9 0 1 836 genus 3 9539 Porphyromonas 52 Porphyromonas asaccharolytica 1406 1 species 28123 0 0 837 species 1 8081 Porphyromonas gingivalis no rank 185291 1 0 1282 Bacteroidales bacterium CF 1282 1 species 1400053 0 1937959 class 6 0 1 1 1626 Saprospiria 1936988 order 5 0 1 17 1625 Saprospirales 321 0 family 89374 2 1 0 2 genus 1007 Saprospira 321 3 0 species 1008 1 Saprospira grandis 318 0 1 family 1937961 2 Haliscomenobacteraceae 1287 1 1286 2349 genus 1 0 Haliscomenobacter hydrossis 1286 species 2350 1 0 16829 Sphingobacteriia 9 1 0 23 117747 class 16820 Sphingobacteriales 30 0 1 200666 order 22 16790 Sphingobacteriaceae 17 0 1 84566 family 21 6 84567 genus 1 0 9 5506 Pedobacter 430522 species 1 0 1105 Pedobacter steynii 761 Pedobacter cryoconitis 1 188932 species 0 1 363852 species 0 996 Pedobacter ginsengisoli 1 species 984 0 Pedobacter heparinus 1371 1264 0 1 no rank 2628915 1264 Pedobacter sp. PACM 27299 1 1727164 species 0 4970 Sphingobacterium 17 0 1 28453 genus 6 0 1 1010 species 979 Sphingobacterium mizutaii 0 4 2609468 no rank 3974 0 1 1933220 species 1066 Sphingobacterium sp. B29 0 1 2003121 species 1133 Sphingobacterium sp. G1-14 Sphingobacterium sp. ML3W 685 0 1 species 1538644 743722 species 1 0 1090 Sphingobacterium sp. 21 1 1237 Solitalea 929509 genus 2 0 1 0 1 species 995 Solitalea canadensis 1236 4 423349 genus 1 0 6 2918 Mucilaginibacter 1 2617802 no rank 0 1030 1300914 species 1 0 1030 Mucilaginibacter sp. PAMC 26640 1159 Mucilaginibacter gotjawali 0 1550579 species 1 723 Mucilaginibacter sp. BJC16-A31 1 1234841 species 0 0 1 84568 no rank 1012 1012 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1 1986952 species 0 1 1649482 genus 1130 1130 Pseudopedobacter saltans 0 1 151895 species 48 86125 Flavobacteriia 139 117743 class 1 0 1 0 138 200644 order 86077 Flavobacteriales 36 family 1755828 1 0 161 0 1 1755829 genus 161 Ichthyobacterium seriolicida 161 0 species 242600 1 236 no rank 313602 2 0 1940138 genus 1 0 59 0 1 1415657 species 59 Candidatus Walczuchella monophlebidarum 1 336809 genus 0 177 336810 species 1 0 177 Candidatus Sulcia muelleri 550 2 1333713 family 0 0 1 267986 genus 2 550 Owenweeksia 5 0 1 species 253245 Owenweeksia hongkongensis 545 29809 0 2762318 family 21 322 1013 genus 1 0 0 1014 species 1 322 Weeksella virosa 22 6316 Elizabethkingia 308865 genus 6 0 1 1 1117645 species 0 2232 Elizabethkingia anophelis 1119 Elizabethkingia meningoseptica 0 1 238 species 0 1756149 species 1 834 Elizabethkingia genomosp. 3 1507 Elizabethkingia miricola 0 172045 species 1 1 1756150 species 0 602 Elizabethkingia genomosp. 4 Riemerella 1110 1 1 0 2 genus 34084 0 1 34085 species 1109 Riemerella anatipestifer 12635 Ornithobacterium 25 1 0 2 28250 genus 0 1 species 28251 Ornithobacterium rhinotracheale 12610 0 no rank 2782232 10 9426 9 genus 59732 1 0 79 Chryseobacterium 7859 1019 Chryseobacterium glaciei 0 1685010 species 1 0 species 558152 1 Chryseobacterium piperi 730 1 253 species 0 1718 Chryseobacterium indologenes 0 1265445 species 1 859 Chryseobacterium camelliae 1 species 1324352 0 Chryseobacterium gallinarum 992 2462 no rank 2593645 3 0 1721091 species 1 0 840 Chryseobacterium sp. IHB B 17019 799 Chryseobacterium sp. T16E-39 0 2015076 species 1 878220 species 1 0 823 Chryseobacterium sp. StRB126 1567 2782228 genus 1 0 0 536441 species 1 1567 Chryseobacterium taklimakanense 815 0 2 family 1853230 Fluviicola 815 19 1 0 2 genus 332102 191579 species 1 0 796 Fluviicola taffensis 698 9 39782 family 0 34098 genus 9 0 1 7 698 Blattabacterium 511 no rank 2647581 6 0 110 Blattabacterium sp. (Blattella germanica) 1 624186 species 0 1 39768 species 0 87 Blattabacterium sp. (Mastotermes darwiniensis) 0 367488 species 1 78 Blattabacterium sp. (Periplaneta americana) 1 1316444 species 0 117 Blattabacterium sp. (Nauphoeta cinerea) Blattabacterium sp. (Blaberus giganteus) 74 0 1 species 1186051 45 Blattabacterium sp. (Blatta orientalis) 367806 species 1 0 0 1 species 1653831 Blattabacterium cuenoti 71 0 1 164514 species 109 Blattabacterium punctulatus 308 Flavobacteriaceae 53772 family 49546 100 0 1 598 0 1 261827 genus 0 1736674 species 1 598 Algibacter alginicilyticus 1 0 2 252306 genus 684 Robiginitalea 4 Robiginitalea biformata 680 0 species 252307 1 1 Seonamhaeicola 385 2 genus 1649495 1 0 0 1 2622645 no rank 384 0 1 1936081 species 384 Seonamhaeicola sp. S2-3 2 genus 143222 1 0 1 Salegentibacter 666 0 1 no rank 2633436 665 665 Salegentibacter sp. T436 1 1729720 species 0 800 2 genus 286104 0 800 0 2 2615021 no rank 0 1 754409 species 439 Winogradskyella sp. PG-2 0 1936080 species 1 361 Winogradskyella sp. J14-2 1 0 5 genus 252356 Maribacter 1972 1 1 1178778 species 0 535 Maribacter cobaltidurans 0 no rank 2615042 3 1436 483 Maribacter sp. T28 1836467 species 1 0 429 Maribacter sp. HTCC2170 0 1 313603 species 524 Maribacter sp. 1_2014MBL_MicDiv 0 1 1644130 species 410 83612 genus 1 0 0 1 species 57029 Psychroflexus torquis 410 2938 0 4 292691 genus 0 411153 species 1 602 Gramella forsetii Gramella sp. SH35 891 0 1 species 2126553 0 species 1486245 1 Gramella flava 706 species 1913577 1 0 Gramella sp. LPB0144 739 178469 genus 1 0 702 0 616991 species 1 702 Arenibacter algicola 559 0 1 153265 genus Aequorivita sublithincola 559 1 species 101385 0 genus 1209327 1 0 693 species 1803846 1 0 Flavivirga eckloniae 693 1 216431 genus 0 423 423 Croceibacter atlanticus 1 313588 species 0 Myroides 3483 81 0 1 genus 76831 5 593 Myroides profundi 0 1 480520 species 1476 Myroides odoratimimus 76832 species 1 0 0 2642485 no rank 2 1333 0 species 1458492 1 Myroides sp. ZB35 687 646 Myroides sp. A21 1 1583100 species 0 0 4 genus 363408 1532 0 species 319236 1 Nonlabens sediminis 302 0 1 328515 species 574 Nonlabens dokdonensis 656 no rank 2615035 2 0 1 1476901 species 0 291 Nonlabens sp. MIC269 0 1 species 2058134 Nonlabens sp. MB-3u-79 365 104264 genus 4 0 1 7 1782 Cellulophaga Cellulophaga lytica 599 0 1 species 979 Cellulophaga baltica 551 0 1 species 76594 625 Cellulophaga algicola 1 59600 species 0 0 1 225842 genus 3 555 Formosa 1 554 2 2644710 no rank 0 Formosa sp. Hel1_33_131 403 species 1336794 1 0 0 1336795 species 1 151 Formosa sp. Hel3_A1_48 1 0 15 1016 genus 13454 Capnocytophaga 22 0 1 species 1848904 Capnocytophaga stomatis 963 864 Capnocytophaga ochracea 0 1 1018 species 28188 species 1 0 864 Capnocytophaga canimorsus 0 1 species 1017 Capnocytophaga gingivalis 686 1 327575 species 0 1764 Capnocytophaga leadbetteri 0 28189 species 1 632 Capnocytophaga cynodegmi 1648 Capnocytophaga sputigena 1019 species 1 0 Capnocytophaga haemolytica 776 1 species 45243 0 5235 0 2640652 no rank 6 Capnocytophaga sp. oral taxon 864 1032 1 species 1316593 0 0 1945657 species 1 488 Capnocytophaga sp. H2931 989 Capnocytophaga sp. oral taxon 323 0 1 1705617 species Capnocytophaga sp. oral taxon 878 1550 0 species 1316596 1 0 1 species 1945658 Capnocytophaga sp. H4358 415 Capnocytophaga sp. ChDC OS43 761 1 species 209053 0 6 Tenacibaculum 1831 genus 104267 5 0 1 476 Tenacibaculum jejuense 584609 species 1 0 1 species 669041 0 Tenacibaculum dicentrarchi 411 Tenacibaculum maritimum 480 0 1 species 107401 458 Tenacibaculum todarodis 1850252 species 1 0 0 61432 no rank 2 1588 0 species 1150389 1 Flavobacteriaceae bacterium UJ101 852 species 531844 1 0 Flavobacteriaceae bacterium 3519-10 736 488 0 1 genus 336276 488 0 2615019 no rank 1 0 1 species 2058135 Olleya sp. Bg11-27 488 1 0 9 237 genus 6628 Flavobacterium 14 379 Flavobacterium branchiophilum 0 1 55197 species 986 species 1 0 2207 Flavobacterium johnsoniae 1 species 1492737 0 Flavobacterium gilvum 818 Flavobacterium crassostreae 292 0 species 1763534 1 0 996 species 1 1007 Flavobacterium columnare 0 312277 species 1 484 Flavobacterium indicum 1115 Flavobacterium commune 1306519 species 1 0 312 Flavobacterium psychrophilum 0 96345 species 1 0 1176327 genus 1 314 314 0 1 2636237 no rank 0 species 2094025 1 Aureitalea sp. RR4-38 314 1 389486 genus 0 351 351 2648869 no rank 1 0 1453352 species 1 0 351 Sediminicola sp. YIK13 0 1 2700084 genus 570 570 Lutibacter sp. LPB0138 0 1 1850246 species 892 0 genus 417127 1 892 Zunongwangia profunda 1 398743 species 0 2 Dokdonia 876 genus 326319 4 0 1 267 Dokdonia donghaensis 326320 species 1 0 607 0 2 no rank 2615033 species 983548 1 0 Dokdonia sp. 4H-3-7-5 367 240 Dokdonia sp. MED134 0 313590 species 1 1 1518147 genus 0 422 0 1790137 species 1 422 Wenyingzhuangia fucanilytica 447 358023 genus 1 0 447 Lutibacter profundi 1 1622118 species 0 0 1 291183 genus 4 1205 Lacinutrix 2 Lacinutrix venerupis 310 1 species 1486034 0 2 no rank 2647285 0 893 1 2057808 species 0 458 Lacinutrix sp. Bg11-31 0 1 species 983544 Lacinutrix sp. 5H-3-7-4 435 2 genus 112040 1 0 11 Zobellia 639 1 63186 species 0 628 Zobellia galactanivorans 393005 genus 2 0 1 1 474 Tamlana 473 Tamlana sp. UJ94 1 2069432 species 0 genus 1204360 1 0 477 0 1 species 762954 Siansivirga zeaxanthinifaciens 477 1 0 6 genus 52959 Polaribacter 3545 1 0 1 species 1774273 Polaribacter vadi 1214 0 1 996801 species 772 Polaribacter reichenbachii 3 196858 no rank 0 1558 Polaribacter sp. MED152 490 1 species 313598 0 Polaribacter sp. ALD11 594 species 2058137 1 0 Polaribacter sp. BM10 474 0 species 1529069 1 1 0 3 genus 111500 Muricauda 1081 1 555 Muricauda lutaonensis 0 1 516051 species 525 Muricauda ruestringensis 111501 species 1 0 824 0 6 200940 phylum 824 0 6 class 67799 824 Thermodesulfobacteriales 1 1 0 6 188710 order 1 0 5 188711 family 823 Thermodesulfobacteriaceae 1 106 genus 444090 1 0 106 Caldimicrobium thiodismutans 1653476 species 1 0 1 241192 genus 0 296 Thermodesulfatator indicus 296 0 species 171695 1 0 2 1740 genus 420 species 1295609 1 0 Thermodesulfobacterium geofontis 278 0 species 1741 1 Thermodesulfobacterium commune 142 742 phylum 68297 3 0 3 203486 class 0 742 3 order 203487 0 742 742 3 family 203488 0 15 742 Dictyoglomus 13 genus 3 0 1 0 species 513050 1 Dictyoglomus turgidum 415 0 14 species 1 312 Dictyoglomus thermophilum 2815 0 20 200783 phylum 1 2815 Aquificae 20 187857 class 1 0 1485951 order 2 0 437 437 2 558314 family 0 1 171868 genus 0 96 1 228745 species 0 96 Thermovibrio ammonificans 341 0 1 genus 64159 0 1 64160 species 341 Desulfurobacterium thermolithotrophum 0 1 order 32069 17 Aquificales 2377 2 0 90150 no rank 1 282 1 genus 412592 0 282 Thermosulfidibacter takaii 282 0 species 412593 1 64898 family 11 0 1 1 1341 Aquificaceae 116 1 genus 939 0 Hydrogenobacter thermophilus 116 0 1 species 940 254 0 2 genus 75905 0 1 species 136094 Thermocrinis albus 116 0 1 species 75906 Thermocrinis ruber 138 2713 genus 1 0 134 63363 species 1 0 134 Aquifex aeolicus 0 1 168657 genus 6 836 Hydrogenobaculum 22 no rank 2622382 5 0 814 1 380749 species 0 98 Hydrogenobaculum sp. Y04AAS1 179 Hydrogenobaculum sp. 3684 0 1 547143 species Hydrogenobaculum sp. SN 179 0 species 547146 1 547145 species 1 0 179 Hydrogenobaculum sp. SHO Hydrogenobaculum sp. HO 179 species 547144 1 0 0 family 224027 4 752 212790 genus 2 0 504 183 Sulfurihydrogenibium azorense 0 1 309806 species 1 no rank 2619248 0 321 Sulfurihydrogenibium sp. YO3AOP1 321 species 436114 1 0 182899 genus 2 0 1 1 248 Persephonella Persephonella marina 247 species 309805 1 0 0 phylum 508458 10 3206 11 3206 Synergistia 10 649775 class 1 0 1 0 9 649776 order 3195 Synergistales 7 82 Synergistaceae 3188 8 family 649777 1 0 genus 508459 2 0 1 6 Cloacibacillus 2065 Cloacibacillus porcorum 2059 0 1 species 1197717 395 0 genus 81466 1 395 Aminobacterium colombiense 0 1 81468 species 0 genus 49894 1 160 Acetomicrobium mobile 160 species 97477 1 0 genus 81461 2 0 1 1 Thermanaerovibrio 352 0 1 species 81462 Thermanaerovibrio acidaminovorans 351 genus 336260 1 0 134 134 Thermovirga lienii 1 336261 species 0 0 7 phylum 74152 1330 790 0 class 447830 5 790 Endomicrobiales 1 1 0 5 1783344 order 1783343 family 4 0 1 2 789 Endomicrobiaceae 1 Endomicrobium 787 genus 1408194 3 0 1 1 species 1408281 0 Endomicrobium proavitum 499 Candidatus Endomicrobium trichonymphae 287 0 1 species 1408204 277 1 no rank 99260 0 277 uncultured Termite group 1 bacterium 167965 species 1 0 263 1 class 641853 0 order 641854 1 0 263 263 1 family 641876 0 263 0 423604 genus 1 0 species 423605 1 Elusimicrobium minutum 263 0 1668 1783272 clade 4284377 89 3871978 Firmicutes 1239 phylum 703 0 1 no rank 84086 1 0 794 243899 species 1 0 794 endosymbiont 'TC1' of Trimyema compressum 1 0 31 class 909932 Negativicutes 51820 46 17336 Acidaminococcales 12 0 1 1843488 order 5 36 Acidaminococcaceae 17324 4 family 909930 1 0 Acidaminococcus 17288 35 0 1 genus 904 3 1 905 species 0 6637 Acidaminococcus fermentans 1 187327 species 0 10616 Acidaminococcus intestini 19496 Selenomonadales 58 1 0 14 909929 order 5 Sporomusaceae 3632 4 family 1843490 1 0 3627 Pelosinus 5 0 1 365348 genus 3 0 2629460 no rank 1 1814 0 484770 species 1 1814 Pelosinus sp. UFO1 1808 Pelosinus fermentans 0 365349 species 1 1 0 9 family 1843491 Selenomonadaceae 15806 61 Megamonas 4650 1 0 1 genus 158846 2 0 1 species 158847 Megamonas hypermegale 4649 genus 970 6 0 1 93 Selenomonas 11095 3 no rank 2637378 0 4913 1880 Selenomonas sp. oral taxon 136 1 713030 species 0 species 712538 1 0 Selenomonas sp. oral taxon 478 1556 0 species 1884263 1 Selenomonas sp. oral taxon 920 1477 Selenomonas sputigena 2112 1 species 69823 0 Selenomonas ruminantium 3977 species 971 1 0 order 1843489 11 0 1 350 Veillonellales 14942 0 1 31977 family 10 14592 Veillonellaceae 822 0 1 29465 genus 3 3581 Veillonella 11 1459 Veillonella rodentium 1 248315 species 0 1 29466 species 0 2111 Veillonella parvula 0 1 genus 909928 2 Negativicoccus 1066 2 0 1 species 1702287 Negativicoccus massiliensis 1064 0 1 906 genus 2 7846 Megasphaera 1038 species 907 1 0 Megasphaera elsdenii 6808 1 0 2 genus 39948 Dialister 1277 12 0 39950 species 1 1265 Dialister pneumosintes class 1737404 18 0 12539 Tissierellales 12022 127 1 0 16 order 1737405 2 Gottschalkiaceae 1006 family 2042895 3 0 1 2 1505664 genus 1 0 6 1004 Gottschalkia 1556 species 1 0 998 Gottschalkia acidurici 1570339 family 12 0 1 2139 10889 Peptoniphilaceae 1 0 2 1161127 genus 4553 Murdochiella 1 4552 Murdochiella vaginalis 0 1 1852373 species 1 0 2 162289 genus 908 Peptoniphilus 1 1 no rank 2637196 0 907 1 species 1912856 0 Peptoniphilus sp. ING2-D1G 907 2 genus 543311 1 0 6 Parvimonas 985 0 33033 species 1 979 Parvimonas micra 3 1124 Finegoldia 150022 genus 2 0 1 Finegoldia magna 1121 0 1 species 1260 1 0 3 165779 genus 1180 Anaerococcus 1 Anaerococcus mediterraneensis 629 0 1 species 1870984 550 Anaerococcus prevotii 1 33034 species 0 517 0 2 no rank 1737407 5 Ezakiella 517 2 genus 1582879 1 0 1852374 species 1 0 512 Ezakiella massiliensis no rank 33974 2 0 907 0 1 1930845 genus 2 907 Ndongobacter 4 0 species 1871025 1 Ndongobacter massiliensis 903 212 class 186801 1 0 154 Clostridia 3428535 order 2770089 4 0 1788 891 0 2 2770092 family 2 genus 499228 1 0 1 Tepidanaerobacter 891 890 Tepidanaerobacter acetatoxydans 0 1 499229 species 0 2 2770093 family 897 2 291988 genus 1 0 31 897 Thermosediminibacter Thermosediminibacter oceani 866 species 291990 1 0 389 485256 order 3 0 0 1 485255 family 3 389 Natranaerobiaceae 2 0 1 375928 genus 2 387 Natranaerobius 20 Natranaerobius thermophilus 367 species 375929 1 0 3288 Halanaerobiales 2 1 0 10 53433 order 1 0 5 972 family 2204 Halanaerobiaceae 2 769 32636 genus 1 0 769 Halothermothrix orenii 1 31909 species 0 2330 genus 3 0 1 2 1433 Halanaerobium 1 656519 species 0 877 Halanaerobium hydrogeniformans 2331 species 1 0 554 Halanaerobium praevalens 1 0 4 family 53434 Halobacteroidaceae 1082 5 1 0 2 42417 genus 403 Halobacteroides 2 401 Halobacteroides halobius 42422 species 1 0 674 0 1 28186 genus 674 Acetohalobium arabaticum 0 1 28187 species 17286 Thermoanaerobacterales 24 0 1 68295 order 37 30 Thermoanaerobacterales Family III. Incertae Sedis 8259 13 family 543371 1 0 5556 Caldicellulosiruptor 72 1 0 9 44000 genus Caldicellulosiruptor owensensis 651 0 species 55205 1 0 1 species 413889 Caldicellulosiruptor kronotskyensis 673 1 44001 species 0 707 Caldicellulosiruptor saccharolyticus Caldicellulosiruptor kristjanssonii 625 0 1 species 52765 Caldicellulosiruptor lactoaceticus 601 0 species 52766 1 755 Caldicellulosiruptor obsidiansis 717609 species 1 0 1 species 31899 0 Caldicellulosiruptor bescii 754 718 Caldicellulosiruptor hydrothermalis 0 413888 species 1 4 Thermoanaerobacterium 2673 genus 28895 3 0 1 species 1517 1 0 Thermoanaerobacterium thermosaccharolyticum 1742 1 species 29329 0 Thermoanaerobacterium xylanolyticum 927 0 2 227387 family 239 1 0 2 genus 227388 Thermodesulfobium 239 1 238 Thermodesulfobium narugense 0 1 184064 species 3 543372 family 1 0 22 688 Thermoanaerobacterales Family IV. Incertae Sedis 666 Mahella 3 1 0 2 252965 genus 663 Mahella australiensis 0 252966 species 1 0 1 186814 family 18 8076 Thermoanaerobacteraceae 21 0 genus 140458 1 742 0 species 85874 1 Thermacetogenium phaeum 742 129957 genus 1 0 618 species 129958 1 0 Carboxydothermus hydrogenoformans 618 Caldanaerobacter 672 15 1 0 2 genus 249529 Caldanaerobacter subterraneus 657 species 911092 1 0 9 genus 1754 1 0 135 Thermoanaerobacter 4753 1357 2636821 no rank 2 0 0 399726 species 1 638 Thermoanaerobacter sp. X514 0 species 573062 1 Thermoanaerobacter sp. X513 719 483 Thermoanaerobacter kivui 0 1 2325 species 0 496866 species 1 623 Thermoanaerobacter pseudethanolicus 1 46354 species 0 479 Thermoanaerobacter wiegelii 0 108150 species 1 531 Thermoanaerobacter italicus species 29323 1 0 Thermoanaerobacter brockii 623 0 species 583357 1 Thermoanaerobacter mathranii 522 4 42857 no rank 0 1270 42837 genus 2 0 1 2 376 Ammonifex 0 42838 species 1 374 Ammonifex degensii Moorella 894 14 0 1 genus 44260 2 0 1 species 1525 Moorella thermoacetica 880 1 0 157 186802 order 3405630 Clostridiales 8641 107417 Clostridiaceae 389 0 1 31979 family 41 1 0 3 114627 genus 2889 Alkaliphilus 4 1 208226 species 0 1506 Alkaliphilus metalliredigens species 461876 1 0 Alkaliphilus oremlandii 1379 49082 genus 4 0 1 9 2126 Candidatus Arthromitus no rank 2638829 3 0 2117 species 49118 1 0 Candidatus Arthromitus sp. SFB-mouse 706 702 Candidatus Arthromitus sp. SFB-rat-Yit 1 1041504 species 0 0 1508644 species 1 709 Candidatus Arthromitus sp. SFB-mouse-NL Mordavella 109 genus 1981033 1 0 390805 genus 2 0 1 9 2373 Geosporobacter 0 species 1424294 1 Geosporobacter ferrireducens 2364 0 1 1485 genus 30 99531 Clostridium 515 1 species 84022 0 Clostridium aceticum 1352 0 1 species 1497 Clostridium formicaceticum 1355 Clostridium novyi 1561 1 species 1542 0 1520 species 1 0 4072 Clostridium beijerinckii 1846 Clostridium autoethanogenum 0 84023 species 1 3022 Clostridium saccharobutylicum 169679 species 1 0 10983 Clostridium botulinum 0 1491 species 1 1 species 1493 0 Clostridium cellulovorans 2341 1 1492 species 0 4703 Clostridium butyricum Clostridium carboxidivorans 2415 0 species 217159 1 3385 Clostridium kluyveri 0 1534 species 1 2477 Clostridium taeniosporum 394958 species 1 0 species 1501 1 0 Clostridium pasteurianum 3976 0 1 species 36745 Clostridium saccharoperbutylacetonicum 3188 1561 species 1 0 3967 Clostridium baratii Clostridium argentinense 1815 species 29341 1 0 4455 Clostridium perfringens 0 1 1502 species 0 1 1488 species 1333 Clostridium acetobutylicum 0 1 1513 species 2545 Clostridium tetani Clostridium scatologenes 2007 species 1548 1 0 0 species 1509 1 Clostridium sporogenes 1518 Clostridium chauvoei 2644 species 46867 1 0 1494 species 1 0 2029 Clostridium cochlearium 1939 Clostridium ljungdahlii 0 1538 species 1 22549 0 2 2614128 no rank 1 species 1042156 0 Clostridium sp. SY8519 20191 755731 species 1 0 2358 Clostridium sp. BNL1100 Clostridium bornimense 2654 0 species 1216932 1 1451 Clostridium tyrobutyricum 0 1519 species 1 Clostridium estertheticum 1434 species 238834 1 0 1 0 4 186806 family 13533 Eubacteriaceae 7 1380 0 1 genus 33951 Acetobacterium woodii 1380 species 33952 1 0 genus 1730 2 0 1 240 Eubacterium 12146 11906 Eubacterium limosum 0 1736 species 1 0 11 family 2304686 27454 2352 genus 2304693 1 0 0 1 species 84032 [Clostridium] thermosuccinogenes 2352 genus 1508657 2 0 1 197 Ruminiclostridium 2648 [Clostridium] cellulolyticum 2451 0 species 1521 1 5577 3 genus 2304692 0 Ruminiclostridium thermocellum 2113 1 species 1515 0 0 species 288965 1 [Clostridium] clariflavum 2165 1299 Herbivorax saccincola 1677857 species 1 0 1 1637257 genus 0 2320 Mageeibacillus indolicus 2320 0 species 884684 1 1450 1 genus 2304691 0 1450 [Clostridium] stercorarium 1 1510 species 0 12660 0 2305130 no rank 1 1 1834198 species 0 12660 Ruminiclostridium sp. KB18 2 236752 genus 1 0 1 447 Fastidiosipila 446 Fastidiosipila sanguinis 0 236753 species 1 11728 0 family 216572 2 1 0 2 459786 genus 11728 Oscillibacter 15 species 351091 1 0 Oscillibacter valericigenes 11713 28 14578 Christensenellaceae 990719 family 3 0 1 Christensenella 14550 366 0 1 genus 990721 2 14184 Christensenella massiliensis 0 1 1805714 species 0 10 no rank 538999 89224 0 1 family 539000 3 Clostridiales Family XVII. Incertae Sedis 906 5 4 901 Thermaerobacter 2 73918 genus 1 0 species 73919 1 0 Thermaerobacter marianensis 897 51447 0 genus 2717089 1 1 species 2086584 0 Mordavella sp. Marseille-P3756 51447 Clostridiales Family XIII. Incertae Sedis 4093 5 0 1 family 543314 4 0 1 143393 species 2552 [Eubacterium] sulci 2 86331 genus 1 0 10 1536 Mogibacterium 0 1 114527 species 1526 Mogibacterium diversum 2 genus 1392389 1 0 399 Intestinimonas 32778 32379 Intestinimonas butyriciproducens 1297617 species 1 0 0 1 541000 family 12 1417175 Ruminococcaceae 198 62 18333 Ruminococcus 3 1263 genus 1 0 species 1264 1 0 Ruminococcus albus 5585 1 1160721 species 0 12686 Ruminococcus bicirculans 2305133 no rank 1 0 4318 0 1 1572656 species 4318 Ruminococcaceae bacterium CPB6 2368 0 552397 no rank 1 2368 [Clostridium] cellulosi 1 29343 species 0 2 216851 genus 1 0 1419 1249532 Faecalibacterium Faecalibacterium prausnitzii 1248113 0 species 853 1 0 1 946234 genus 2 138065 Flavonifractor 55 0 1 species 292800 Flavonifractor plautii 138010 18 4361 Ethanoligenens 2 253238 genus 1 0 253239 species 1 0 4343 Ethanoligenens harbinense 0 1 family 186803 26 Lachnospiraceae 1614162 1945 251 178172 Lachnoclostridium 1506553 genus 4 0 1 0 1871021 species 1 48830 Lachnoclostridium phocaeense Lachnoclostridium phytofermentans 8657 species 66219 1 0 120434 0 no rank 2608895 1 120434 Lachnoclostridium sp. YL32 0 1834196 species 1 2 841 genus 1 0 30 191619 Roseburia 0 1 301301 species 191589 Roseburia hominis 1 0 3 572511 genus 153828 Blautia 59 0 1 2648079 no rank 42866 42866 Blautia sp. YL58 1 1796616 species 0 0 1322 species 1 110903 Blautia hansenii 399152 0 186928 no rank 2 0 39491 species 1 387284 [Eubacterium] rectale 11868 Lachnospiraceae bacterium oral taxon 500 712991 species 1 0 383939 0 2719313 genus 1 383939 [Clostridium] bolteae 1 208479 species 0 2 genus 207244 1 0 93 Anaerostipes 81406 81313 Anaerostipes hadrus 649756 species 1 0 53887 1 28050 genus 0 [Eubacterium] eligens 53887 0 species 39485 1 Butyrivibrio 20250 19 0 1 genus 830 3 9695 Butyrivibrio hungatei 0 1 185008 species Butyrivibrio proteoclasticus 10536 0 1 species 43305 0 1 genus 2719231 50231 [Clostridium] saccharolyticum 50231 0 species 84030 1 1 2569097 genus 0 80228 80228 [Eubacterium] hallii 0 1 39488 species 6139 0 1 genus 1663717 1 species 1679721 0 Herbinix luporum 6139 Anaerotignum 9476 6 1 0 2 genus 2039240 Anaerotignum propionicum 9470 0 species 28446 1 genus 698776 2 0 1 1 Cellulosilyticum 3890 1 29360 species 0 3889 Cellulosilyticum lentocellum family 31984 3 0 1 2 Heliobacteriaceae 1585 0 1 2697 genus 2 1583 Heliobacterium 15 species 35701 1 0 Heliobacterium modesticaldum 1568 Peptostreptococcaceae 72793 224 0 1 family 186804 11 1849828 genus 2 0 1 5 1870 Paeniclostridium 1865 Paeniclostridium sordellii 0 1505 species 1 1870884 genus 2 0 1 134 66438 Clostridioides 1 species 1496 0 Clostridioides difficile 66304 618 0 1 1411023 no rank 2081703 species 1 0 618 Peptostreptococcaceae bacterium oral taxon 929 Peptoclostridium 1178 1 1 0 2 genus 1481960 0 1731 species 1 1177 Peptoclostridium acidaminophilum 1 genus 44259 0 1208 species 143361 1 0 Filifactor alocis 1208 1 0 2 genus 186831 Acetoanaerobium 1257 1 Acetoanaerobium sticklandii 1256 0 species 1511 1 27 family 186807 1 0 50 Peptococcaceae 25133 996 0 1 2282740 genus 996 Desulfotomaculum gibsoniae 102134 species 1 0 0 1 genus 51196 1362 0 species 51197 1 Syntrophobotulus glycolicus 1362 1131 0 1 genus 278993 1131 Thermincola potens 863643 species 1 0 46 3463 Desulfosporosinus 79206 genus 4 0 1 0 885581 species 1 1229 Desulfosporosinus acidiphilus 0 79209 species 1 1119 Desulfosporosinus meridiei Desulfosporosinus orientis 1069 0 1 species 1563 0 1 genus 2282742 1040 Desulfotomaculum acetoxidans 1040 0 species 58138 1 Candidatus Desulforudis 632 3 1 0 2 genus 471826 1 471827 species 0 629 Candidatus Desulforudis audaxviator 1 Dehalobacterium 1845 2 genus 51514 1 0 0 51515 species 1 1844 Dehalobacterium formicoaceticum 5663 Desulfitobacterium 36 1 0 5 36853 genus 1002 Desulfitobacterium metallireducens 1 142877 species 0 1 species 233055 0 Desulfitobacterium dichloroeliminans 859 0 species 49338 1 Desulfitobacterium hafniense 2449 0 36854 species 1 1317 Desulfitobacterium dehalogenans Desulfotomaculum 4026 23 0 1 genus 1562 5 Desulfotomaculum ruminis 1402 1 species 1564 0 Desulfotomaculum nigrificans 929 0 species 1565 1 Desulfotomaculum reducens 724 0 1 species 59610 species 1833852 1 0 Desulfotomaculum ferrireducens 948 25 Dehalobacter 4925 4 genus 56112 1 0 3447 2 no rank 2635733 0 Dehalobacter sp. DCA 1703 1 species 1147129 0 species 1131462 1 0 Dehalobacter sp. CF 1744 1 55583 species 0 1453 Dehalobacter restrictus 7 Symbiobacteriaceae 1284 3 family 543349 1 0 1 0 2 2733 genus 1277 Symbiobacterium 8 0 1 species 2734 Symbiobacterium thermophilum 1269 family 68298 3 0 923 679 1 862 genus 0 1 863 species 0 679 Syntrophomonas wolfei 0 1 genus 129001 2 Syntrophothermus 244 1 243 Syntrophothermus lipocalidus 0 1 86170 species 2 22493 Erysipelotrichia 11 526524 class 1 0 15 22491 Erysipelotrichales 526525 order 10 0 1 47 22476 Erysipelotrichaceae 9 128827 family 1 0 1684 Erysipelothrix 33 0 1 1647 genus 3 0 1 species 1648 Erysipelothrix rhusiopathiae 862 789 Erysipelothrix larvae 1514105 species 1 0 19 2862 Faecalibaculum 2 1729679 genus 1 0 2843 Faecalibaculum rodentium 1702221 species 1 0 2 191303 genus 1 0 3 6268 Turicibacter 6265 1 no rank 2638206 0 6265 Turicibacter sp. H121 1712675 species 1 0 11615 0 no rank 544447 1 Erysipelotrichaceae bacterium I46 11615 0 1 species 1834207 Bacilli 354065 164 1 0 422 class 91061 0 1 1385 order 259 207015 Bacillales 341 3286 8 539002 no rank 0 7 no rank 539742 0 2655 38 Exiguobacterium 2655 7 genus 33986 1 0 no rank 2644629 4 0 1542 0 species 1224749 1 Exiguobacterium sp. ZWU0009 358 365 Exiguobacterium sp. U13-1 1 1849031 species 0 0 1399115 species 1 288 Exiguobacterium sp. MH3 531 Exiguobacterium sp. AT1b 0 1 360911 species species 132920 1 0 Exiguobacterium antarcticum 509 Exiguobacterium sibiricum 566 species 332410 1 0 631 0 1 539738 no rank 631 0 1378 genus 1 no rank 2624949 1 0 631 631 Gemella sp. oral taxon 928 0 1785995 species 1 5488 Listeriaceae 6 0 1 186820 family 8 genus 2755 1 0 471 0 2756 species 1 471 Brochothrix thermosphacta 5011 Listeria 38 0 1 1637 genus 6 1638 species 1 0 977 Listeria ivanovii 0 1 species 1639 Listeria monocytogenes 2033 622 Listeria innocua 1 1642 species 0 1 species 1640 0 Listeria seeligeri 657 1 1643 species 0 684 Listeria welshimeri 0 1 90964 family 40 22302 Staphylococcaceae 891 genus 1279 33 0 1 361 Staphylococcus 18278 0 1 1282 species 633 Staphylococcus epidermidis Staphylococcus kloosii 533 0 species 29384 1 0 1295 species 1 479 Staphylococcus schleiferi 1 45972 species 0 738 Staphylococcus pasteuri 500 Staphylococcus argenteus 985002 species 1 0 473 Staphylococcus hyicus 1 1284 species 0 0 1 species 29388 Staphylococcus capitis 597 283734 species 1 0 658 Staphylococcus pseudintermedius 1 246432 species 0 597 Staphylococcus equorum Staphylococcus aureus 2335 0 1 species 1280 1 species 70258 0 Staphylococcus piscifermentans 417 Staphylococcus warneri 332 0 species 1292 1 454 Staphylococcus simiae 0 1 308354 species 1 species 28035 0 Staphylococcus lugdunensis 393 409 Staphylococcus pettenkoferi 1 170573 species 0 Staphylococcus nepalensis 491 species 214473 1 0 Staphylococcus agnetis 336 species 985762 1 0 547 Staphylococcus carnosus 0 1 1281 species Staphylococcus condimenti 516 species 70255 1 0 0 species 1296 1 Staphylococcus sciuri 506 Staphylococcus lutrae 444 0 1 species 155085 387 Staphylococcus cohnii 1 29382 species 0 0 1 species 1288 Staphylococcus xylosus 873 species 29385 1 0 Staphylococcus saprophyticus 525 563 1 no rank 91994 0 0 1715860 species 1 563 Staphylococcus sp. AntiMn-1 Staphylococcus muscae 327 0 species 1294 1 Staphylococcus simulans 362 1 species 1286 0 Staphylococcus felis 428 1 species 46127 0 394 Staphylococcus hominis 0 1290 species 1 1 species 643214 0 Staphylococcus stepanovicii 553 0 species 1283 1 Staphylococcus haemolyticus 562 Staphylococcus succinus 555 1 species 61015 0 259 0 genus 2005363 1 1 species 1849491 0 Auricoccus indicus 259 18 Macrococcus 2163 4 genus 69965 1 0 0 1 species 1855823 Macrococcus canis 518 0 species 69966 1 Macrococcus caseolyticus 1048 579 no rank 2619255 1 0 species 1898474 1 0 Macrococcus sp. IME1552 579 711 1 genus 45669 0 Salinicoccus halodurans 711 0 species 407035 1 855 0 family 186824 3 Laceyella 29 0 1 genus 292635 826 Novibacillus 78 0 1 1677050 genus 2 748 Novibacillus thermophilus 0 1471761 species 1 1 0 9 186823 family 4296 Alicyclobacillaceae 16 3 1129704 genus 1 0 41 908 Kyrpidia Kyrpidia sp. EA-1 292 1 species 2055160 0 0 species 33943 1 Kyrpidia tusciae 575 0 1 genus 432330 3 Tumebacillus 2162 29 1 species 1214604 0 Tumebacillus algifaecis 827 species 1903704 1 0 Tumebacillus avium 1306 29330 genus 2 0 1 21 1210 Alicyclobacillus 0 1 species 405212 Alicyclobacillus acidocaldarius 1189 26 family 186818 1 0 43 Planococcaceae 15435 157226 genus 1 0 918 918 Jeotgalibacillus malaysiensis 0 1508404 species 1 1 0 2 648802 genus 590 Rummeliibacillus 1 Rummeliibacillus stabekisii 589 0 1 species 241244 106 6601 Planococcus 1372 genus 12 0 1 0 1 species 200991 Planococcus rifietoensis 584 species 192421 1 0 Planococcus maritimus 1225 Planococcus faecalis 466 0 species 1598147 1 0 species 161360 1 Planococcus antarcticus 696 0 1302659 species 1 380 Planococcus sp. L10.15 Planococcus kocurii 571 1 species 1374 0 Planococcus plakortidis 641 0 species 1038856 1 Planococcus donghaensis 462 0 species 414778 1 997 2662419 no rank 2 0 Planococcus sp. MB-3u-03 580 1 species 2058136 0 0 species 1526927 1 Planococcus sp. PAMC 21323 417 0 1 1215089 species 473 Planococcus halocryophilus 4716 Sporosarcina 11 1 0 5 1569 genus no rank 2647733 2 0 2467 Sporosarcina sp. P33 1291 0 1 species 1930764 0 1930546 species 1 1176 Sporosarcina sp. P37 0 species 1571 1 Sporosarcina ureae 1702 536 Sporosarcina psychrophila 0 1 1476 species 1850 Solibacillus 6 1 0 3 648800 genus 724 2637870 no rank 1 0 0 2048654 species 1 724 Solibacillus sp. R5-41 Solibacillus silvestris 1120 1 species 76853 0 2 genus 1649 1 0 1 Kurthia 717 no rank 2644826 1 0 716 Kurthia sp. 11kri321 716 0 1 species 1750719 0 1 family 186822 46 Paenibacillaceae 57466 100 0 1 55080 genus 4 3231 Brevibacillus 16 1393 species 1 0 1225 Brevibacillus brevis 0 1 1465 species 1352 Brevibacillus laterosporus 638 Brevibacillus formosus 0 54913 species 1 0 1 genus 44249 36 Paenibacillus 51077 368 Paenibacillus peoriae 842 species 59893 1 0 1 species 365617 0 Paenibacillus sabinae 1035 Paenibacillus donghaensis 1776 0 1 species 414771 Paenibacillus borealis 2010 0 species 160799 1 Paenibacillus naphthalenovorans 1210 0 species 162209 1 Paenibacillus bovis 1581 0 species 1616788 1 1 species 528191 0 Paenibacillus xylanexedens 1058 1125 Paenibacillus beijingensis 0 1 1126833 species Paenibacillus larvae 915 0 species 1464 1 Paenibacillus odorifer 1128 0 species 189426 1 1341 Paenibacillus terrae 1 159743 species 0 0 1 species 189425 Paenibacillus graminis 1802 0 1 species group 2044880 1992 Paenibacillus riograndensis 1992 1 species 483937 0 1 species 1763538 0 Paenibacillus crassostreae 630 Paenibacillus kribbensis 978 0 1 species 172713 0 species 1406 1 Paenibacillus polymyxa 3349 species 1462996 1 0 Paenibacillus yonginensis 1341 0 1870820 species 1 1727 Paenibacillus ihbetae 0 species 61624 1 Paenibacillus mucilaginosus 2106 Paenibacillus stellifer 1620 0 1 species 169760 13 no rank 185978 0 18251 Paenibacillus sp. FSL R5-0345 922 species 1536770 1 0 1536775 species 1 0 1114 Paenibacillus sp. FSL H7-0737 Paenibacillus sp. Y412MC10 1337 species 481743 1 0 Paenibacillus sp. FSL H7-0357 1928 0 species 1536774 1 1 species 1536771 0 Paenibacillus sp. FSL R5-0912 1804 Paenibacillus sp. 32O-W 1125 species 1695218 1 0 Paenibacillus sp. FSL R7-0273 1931 0 species 1536772 1 1704 Paenibacillus sp. JDR-2 324057 species 1 0 0 1 2069255 species 894 Paenibacillus sp. lzh-N1 1536769 species 1 0 1954 Paenibacillus sp. FSL P4-0081 0 1870819 species 1 1084 Paenibacillus sp. BIHB4019 Paenibacillus sp. IHBB 10380 609 0 1 species 1566358 0 species 1536773 1 Paenibacillus sp. FSL R7-0331 1845 0 1 1178515 species 775 Paenibacillus swuensis 0 species 44251 1 Paenibacillus durus 2117 Thermobacillus 1227 1 1 0 2 genus 76632 1226 Thermobacillus composti 0 377615 species 1 0 3 no rank 85151 1831 genus 55079 3 0 1 14 Aneurinibacillus 1831 857 Aneurinibacillus soli 0 1500254 species 1 960 1 2642329 no rank 0 Aneurinibacillus sp. XH2 960 0 species 1450761 1 family 186817 117 0 1 186 Bacillaceae 96687 4010 Lysinibacillus 18 1 0 5 400634 genus Lysinibacillus fusiformis 705 0 1 species 28031 species 1421 1 0 Lysinibacillus sphaericus 1942 0 no rank 2636778 1 602 0 1 2072025 species 602 Lysinibacillus sp. YS11 743 Lysinibacillus varians 0 1145276 species 1 0 genus 29331 1 680 680 Amphibacillus xylanus 1 1449 species 0 0 1 genus 351195 727 species 1230341 1 0 Salimicrobium jeotgali 727 2 2675229 genus 0 1899 Bacillus simplex 1359 0 1 species 1478 Bacillus muralis 540 1 species 264697 0 Parageobacillus 681 2 0 1 genus 1906945 2 Parageobacillus thermoglucosidasius 679 0 species 1426 1 genus 182709 1 0 1161 0 1 species 182710 Oceanobacillus iheyensis 1161 746 genus 459532 1 0 586416 species 1 0 746 Terribacillus aidingensis 2881 62037 Bacillus 58 1386 genus 1 0 0 10 species group 86661 16865 Bacillus cereus 5747 0 species 1396 1 440 Bacillus toyonensis 0 155322 species 1 502 Bacillus anthracis 0 1392 species 1 Bacillus cytotoxicus 777 species 580165 1 0 Bacillus thuringiensis 4977 species 1428 1 0 459 Bacillus bombysepticus 0 658666 species 1 2192 Bacillus mycoides 1 1405 species 0 3 no rank 2750818 0 1771 species 1892404 1 0 Bacillus sp. ABP14 444 0 species 1839798 1 Bacillus sp. FDAARGOS_235 742 0 1 2053832 species 585 Bacillus sp. HBCD-sjtu 1 86664 species 0 634 Bacillus flexus 2997 Bacillus pumilus 1408 species 1 0 157 Bacillus gibsonii 0 1 79881 species 1235 Bacillus infantis 0 324767 species 1 0 species 1479 1 Bacillus smithii 767 species 135735 1 0 Bacillus endophyticus 928 1404 species 1 0 2051 Bacillus megaterium 0 185979 no rank 19 9829 1 2049935 species 0 107 Bacillus sp. Lzh-5 Bacillus sp. OxB-1 625 species 98228 1 0 Bacillus sp. (in: Bacteria) 207 0 species 1409 1 483 Bacillus sp. SJ-10 0 1 563169 species Bacillus sp. FJAT-14266 788 1 species 1837130 0 species 1574141 1 0 Bacillus sp. YP1 298 Bacillus sp. SDLI1 526 1 species 1774743 0 1 species 666686 0 Bacillus sp. 1NLA3E 872 Bacillus sp. JS 414 0 1 species 1127744 Bacillus sp. H15-1 734 0 species 1856406 1 820 Bacillus sp. X1(2014) 0 1565991 species 1 Bacillus sp. Pc3 483 species 1446792 1 0 884 Bacillus sp. IHB B 7164 1 1827146 species 0 0 2009331 species 1 423 Bacillus sp. MD-5 0 species 1628753 1 Bacillus sp. LM 4-2 172 Bacillus sp. BH072 125 0 species 1570330 1 Bacillus sp. WP8 690 1 species 756828 0 Bacillus sp. 1s-1 734 0 1 species 2026248 1941347 species 1 0 444 Bacillus sp. 275 804 0 1 1792192 species group 804 Bacillus altitudinis 0 293387 species 1 species 1664069 1 0 Bacillus glycinifermentans 1016 0 species 79883 1 Bacillus horikoshii 640 Bacillus safensis 1513 species 561879 1 0 632773 species 1 0 617 Bacillus beveridgei 9 653685 species group 0 13069 1 species 119858 0 Bacillus sonorensis 1117 Bacillus subtilis 4711 1 species 1423 0 species 1402 1 0 Bacillus licheniformis 972 Bacillus paralicheniformis 858 species 1648923 1 0 1207 Bacillus atrophaeus 0 1 1452 species Bacillus vallismortis 133 species 72361 1 0 0 3 1938374 species subgroup 4071 Bacillus amyloliquefaciens 1911 0 1 species 1390 492670 species 1 0 1638 Bacillus velezensis 0 659243 species 1 522 Bacillus siamensis 791 Bacillus aryabhattai 0 1 412384 species Bacillus coagulans 1830 0 1 species 1398 547 Bacillus xiamenensis 0 1178537 species 1 1 1471 species 0 877 Bacillus methanolicus 611 Bacillus cohnii 1 33932 species 0 1413 species 1 0 721 Bacillus cellulosilyticus 1 species 1547283 0 Bacillus weihaiensis 657 0 1 1055323 genus 2 693 Aeribacillus 1 Aeribacillus pallidus 692 0 1 species 33936 2 genus 2675230 0 1922 0 species 665099 1 Bacillus oceanisediminis 1151 0 species 859143 1 Bacillus kochii 771 genus 45667 3 0 1 2 Halobacillus 1476 1570 species 1 0 606 Halobacillus halophilus Halobacillus mangrovi 868 0 1 species 402384 1 0 6 genus 150247 Anoxybacillus 3185 12 1225 2 2639704 no rank 0 1490057 species 1 0 549 Anoxybacillus sp. B7M1 0 1 species 1490052 Anoxybacillus sp. B2M1 676 Anoxybacillus gonensis 512 0 1 species 198467 0 species 294699 1 Anoxybacillus amylolyticus 441 995 Anoxybacillus flavithermus 0 33934 species 1 0 1 genus 175304 2 Lentibacillus 660 2 0 species 1472767 1 Lentibacillus amyloliquefaciens 658 2675234 genus 5 0 3348 species 199441 1 0 Bacillus krulwichiae 614 0 species 86665 1 Bacillus halodurans 480 Bacillus clausii 1040 species 79880 1 0 546 Bacillus pseudofirmus 1 79885 species 0 Bacillus lehensis 668 0 1 species 300825 Fictibacillus 1627 1 0 1 genus 1329200 3 746 Fictibacillus phosphorivorans 0 1221500 species 1 880 Fictibacillus arsenicus 255247 species 1 0 15 genus 129337 1 0 388 Geobacillus 7537 0 129338 species 1 570 Geobacillus subterraneus 1972 6 no rank 2642459 0 597 Geobacillus sp. Y4.1MC1 0 581103 species 1 464 Geobacillus sp. WCH70 0 1 471223 species 150 Geobacillus sp. Y412MC52 550542 species 1 0 Geobacillus sp. GHH01 194 0 species 1233873 1 0 544556 species 1 215 Geobacillus sp. Y412MC61 691437 species 1 0 352 Geobacillus sp. C56-T3 2693 0 species group 1505648 4 Geobacillus kaustophilus 328 0 1 species 1462 0 species 169283 1 Geobacillus lituanicus 830 Geobacillus thermocatenulatus 558 species 33938 1 0 1 33941 species 0 977 Geobacillus thermoleovorans 675 Geobacillus thermodenitrificans 0 33940 species 1 1 1921421 species 0 420 Geobacillus genomosp. 3 819 Geobacillus stearothermophilus 1422 species 1 0 7 genus 84406 1 0 9 Virgibacillus 4112 Virgibacillus necropolis 834 0 1 species 163877 1333 2 no rank 2620237 0 Virgibacillus sp. SK37 490 species 403957 1 0 1911587 species 1 0 843 Virgibacillus sp. 6R 0 1473 species 1 659 Virgibacillus pantothenticus Virgibacillus halodenitrificans 577 0 species 1482 1 1 species 2017483 0 Virgibacillus phasianinus 700 0 1 186821 family 859 859 0 no rank 663587 1 [Bacillus] selenitireducens 859 0 species 85683 1 1 0 162 186826 order 146886 Lactobacillales 1109 5 3341 Aerococcaceae 186827 family 8 0 1 0 1 1375 genus 7 3336 Aerococcus 63 464 Aerococcus sanguinicola 119206 species 1 0 Aerococcus viridans 491 1 species 1377 0 species 51665 1 0 Aerococcus urinaeequi 573 87541 species 1 0 356 Aerococcus christensenii 0 128944 species 1 541 Aerococcus urinaehominis 848 Aerococcus urinae 0 1 1376 species 1 0 18 family 81852 Enterococcaceae 23222 47 892 0 1 51668 genus 892 Tetragenococcus halophilus 0 51669 species 1 20761 Enterococcus 1078 1 0 12 1350 genus 532 Enterococcus casseliflavus 0 37734 species 1 1724 3 2608891 no rank 0 571 Enterococcus sp. FDAARGOS_163 2060306 species 1 0 species 2060307 1 0 Enterococcus sp. FDAARGOS_375 621 532 Enterococcus sp. CR-Ec1 1 2057791 species 0 1 species 53346 0 Enterococcus mundtii 889 Enterococcus wangshanyuanii 852 0 1 species 2005703 2479 Enterococcus faecalis 1351 species 1 0 Enterococcus faecium 10981 species 1352 1 0 515 Enterococcus thailandicus 417368 species 1 0 Enterococcus durans 946 0 species 53345 1 Enterococcus hirae 765 species 1354 1 0 470 0 33969 genus 1 470 Melissococcus plutonius 1 33970 species 0 3 2737 genus 1 0 1 1052 Vagococcus 556 Vagococcus teuberi 0 519472 species 1 Vagococcus penaei 495 0 1 species 633807 1 0 17 81850 family 3978 Leuconostocaceae 4 273 1 genus 46254 0 0 1 species 1247 Oenococcus oeni 273 1 1426 Weissella 46255 genus 6 0 1 269 Weissella jogaejeotgali 0 1 1631871 species 387 Weissella cibaria 0 1 137591 species 0 1 1249 species 269 Weissella paramesenteroides 1 165096 species 0 309 Weissella koreensis Weissella ceti 191 0 1 species 759620 Leuconostoc 2275 10 0 1 genus 1243 9 Leuconostoc gelidum 362 1 species 1244 0 0 136609 species 1 266 Leuconostoc kimchii 278 2685106 no rank 1 0 278 Leuconostoc sp. C2 979982 species 1 0 1 species 255248 0 Leuconostoc garlicum 99 Leuconostoc lactis 161 1 species 1246 0 Leuconostoc citreum 228 species 33964 1 0 346 Leuconostoc carnosum 0 1252 species 1 525 Leuconostoc mesenteroides 0 1 1245 species 49 1300 family 1 0 1744 79146 Streptococcaceae 0 1 genus 1357 5 Lactococcus 4043 3 766 Lactococcus garvieae 1 1363 species 0 Lactococcus raffinolactis 567 species 1366 1 0 Lactococcus piscium 345 species 1364 1 0 2362 Lactococcus lactis 1 1358 species 0 73359 Streptococcus 2330 0 1 1301 genus 43 Streptococcus pyogenes 1207 0 species 1314 1 0 1309 species 1 575 Streptococcus mutans 3553 7 no rank 2608887 0 0 species 1902136 1 Streptococcus sp. NPS 308 403 Streptococcus sp. 'group B' 398 0 species 1319 1 1 712633 species 0 362 Streptococcus sp. oral taxon 431 0 1839799 species 1 535 Streptococcus sp. FDAARGOS_192 1759399 species 1 0 721 Streptococcus sp. A12 Streptococcus sp. I-P16 530 0 species 1156433 1 1156431 species 1 0 604 Streptococcus sp. I-G2 1 species 1814128 0 Streptococcus halotolerans 399 0 1 species 1304 Streptococcus salivarius 2095 1 1308 species 0 2268 Streptococcus thermophilus 1348 species 1 0 619 Streptococcus parauberis 518 Streptococcus merionis 400065 species 1 0 Streptococcus gallolyticus 1619 0 1 species 315405 197614 species 1 0 2358 Streptococcus pasteurianus Streptococcus iniae 760 0 species 1346 1 Streptococcus marmotae 541 0 species 1825069 1 species 82348 1 0 Streptococcus pluranimalium 319 1811193 species 1 0 596 Streptococcus pantholopis 0 1 species 59310 Streptococcus macedonicus 389 Streptococcus parasanguinis 1806 0 species 1318 1 1474 Streptococcus mitis 1 28037 species 0 species 1303 1 0 Streptococcus oralis 1239 Streptococcus sanguinis 752 1 species 1305 0 102684 species 1 0 1585 Streptococcus infantarius 1844 0 2 species group 119603 0 1 species 1334 Streptococcus dysgalactiae 715 1129 Streptococcus equi 1336 species 1 0 Streptococcus pseudopneumoniae 567 0 species 257758 1 517 Streptococcus uberis 0 1 1349 species 20140 0 species group 671232 3 12136 Streptococcus anginosus 0 1 1328 species 1155 Streptococcus intermedius 1 1338 species 0 0 76860 species 1 6849 Streptococcus constellatus 0 1 1302 species 1494 Streptococcus gordonii 1 150055 species 0 1290 Streptococcus lutetiensis 467 Streptococcus equinus 0 1335 species 1 Streptococcus pneumoniae 1236 0 species 1313 1 0 1307 species 1 9755 Streptococcus suis Streptococcus himalayensis 579 1 species 1888195 0 594 Streptococcus cristatus 0 45634 species 1 species 1311 1 0 Streptococcus agalactiae 6573 Streptococcus acidominimus 1301 0 species 1326 1 0 263855 no rank 1 315 0 1 species 1993866 Lactobacillales bacterium 315 58 family 33958 1 0 109 Lactobacillaceae 31306 257 0 2767890 genus 1 1 species 1193095 0 Lactobacillus hokkaidonensis 257 903 1 2767876 genus 0 Lactobacillus amylophilus 903 0 species 1603 1 2376 genus 2767879 6 0 Lactobacillus alimentarius 326 species 1602 1 0 0 1 species 1007676 Lactobacillus ginsenosidimutans 370 Lactobacillus crustorum 497 0 species 392416 1 381 Lactobacillus allii 0 1847728 species 1 455 Lactobacillus heilongjiangensis 0 1074467 species 1 Lactobacillus farciminis 347 0 species 1612 1 675 0 2 2767889 genus species 375175 1 0 Lactobacillus backii 244 0 1610 species 1 431 Lactobacillus coryniformis 9943 Lactobacillus 804 1 0 16 1578 genus 0 1 species 33959 Lactobacillus johnsonii 1495 0 1 109790 species 278 Lactobacillus jensenii 0 1596 species 1 1117 Lactobacillus gasseri 0 1 83683 species 246 Lactobacillus amylolyticus 0 1 species 1579 Lactobacillus acidophilus 339 0 1 species 1584 Lactobacillus delbrueckii 1243 Lactobacillus kefiranofaciens 363 0 species 267818 1 1084 0 2620435 no rank 4 species 2108362 1 0 Lactobacillus sp. D1501 186 2099789 species 1 0 296 Lactobacillus sp. CBA3606 1 1545702 species 0 289 Lactobacillus sp. wkB8 species 2099788 1 0 Lactobacillus sp. CBA3605 313 Lactobacillus amylovorus 1319 0 1 species 1604 0 species 1587 1 Lactobacillus helveticus 885 401 Lactobacillus gallinarum 1 52242 species 0 Lactobacillus acetotolerans 369 1 species 1600 0 650 0 2767881 genus 2 205 Lactobacillus sanfranciscensis 1 1625 species 0 445 Lactobacillus lindneri 0 1 53444 species 4057 2767887 genus 4 0 0 species 1623 1 Lactobacillus ruminis 1524 Lactobacillus salivarius 1647 species 1624 1 0 358 Lactobacillus acidipiscis 1 89059 species 0 0 1 species 1601 Lactobacillus agilis 528 1 2767892 genus 0 488 Lactobacillus paracollinoides 488 0 species 240427 1 1063 genus 2767885 2 0 594 Lactobacillus sakei 0 1599 species 1 1 species 28038 0 Lactobacillus curvatus 469 1461 0 2767842 genus 3 0 1 1589 species 415 Lactobacillus pentosus 215 Lactobacillus paraplantarum 60520 species 1 0 831 Lactobacillus plantarum 0 1590 species 1 1002 0 3 2767886 genus 1 species 637971 0 Lactobacillus koreensis 192 1580 species 1 0 607 Lactobacillus brevis 0 267363 species 1 203 Lactobacillus zymae 0 genus 2767877 1 259 259 Lactobacillus kunkeei 148814 species 1 0 0 2742598 genus 3 2009 1 species 1613 0 Lactobacillus fermentum 520 0 97478 species 1 534 Lactobacillus mucosae 0 1 1598 species 955 Lactobacillus reuteri Pediococcus 2261 7 0 1 genus 1253 6 187452 species 1 0 333 Pediococcus claussenii 0 species 1255 1 Pediococcus pentosaceus 563 515 Pediococcus damnosus 0 51663 species 1 species 114090 1 0 Pediococcus inopinatus 301 0 1 1670797 species group 542 Pediococcus acidilactici 542 0 species 1254 1 0 3 genus 2767893 1129 1 species 152331 0 Lactobacillus parabuchneri 274 Lactobacillus buchneri 513 0 species 1581 1 342 Lactobacillus curieae 1138822 species 1 0 2664 0 3 genus 2759736 0 1 1582 species 1073 Lactobacillus casei 1 species 1597 0 Lactobacillus paracasei 750 0 1 47715 species 841 Lactobacillus rhamnosus Carnobacteriaceae 4469 13 0 1 family 186828 10 723 1 191769 genus 0 723 1 2632303 no rank 0 723 Marinilactibacillus sp. 15R 0 1 1911586 species Jeotgalibaca 1024 1 0 1 genus 1470540 3 2621505 no rank 1 0 566 Jeotgalibaca sp. PTS2502 566 0 1 species 1903686 1 708126 species 0 457 Jeotgalibaca dankookensis 1 0 5 genus 2747 Carnobacterium 2709 7 Carnobacterium maltaromaticum 671 0 species 2751 1 1436 0 no rank 257487 2 0 species 1564681 1 Carnobacterium sp. CP1 678 208596 species 1 0 758 Carnobacterium sp. 17-4 1 147709 species 0 595 Carnobacterium inhibens 1 736 Limnochordia 1676648 class 5 0 1 1676649 order 4 0 1 13 735 Limnochordales 0 1 family 1676650 3 Limnochordaceae 722 6 716 Limnochorda 15 1 0 2 1676651 genus Limnochorda pilosa 701 1 species 1555112 0 0 no rank 1859062 2 164 4 164 Thermobaculum 2 262406 genus 1 0 0 1 species 166501 Thermobaculum terrenum 160 0 4 67819 phylum 407 class 1663419 4 0 1 1 Fimbriimonadia 407 1 0 3 1663425 order 406 Fimbriimonadales 5 401 0 2 family 1663426 401 Fimbriimonas 2 1 0 2 1005038 genus 0 1005039 species 1 399 Fimbriimonas ginsengisoli 4 8481 Chloroflexi 43 200795 phylum 1 0 1626 Anaerolineae 1 0 1 292625 class 7 5 1625 Anaerolineales 292629 order 6 0 1 5 292628 family 1 0 2 1620 Anaerolineaceae 1 565 Anaerolinea 233189 genus 2 0 1 Anaerolinea thermophila 564 1 species 167964 0 1 no rank 1324991 0 765 1 1889813 species 0 765 Anaerolineaceae bacterium oral taxon 439 0 2019482 genus 1 288 0 1 1986204 species 288 Brevefilum fermentans Ardenticatenia 950 18 0 1 class 1382928 4 932 Ardenticatenales 21 1 0 3 1382929 order 911 Ardenticatenaceae 7 1 0 2 1382930 family 1 1988031 genus 0 904 Candidatus Promineofilum breve 904 1 species 1806508 0 Caldilineae 565 1 1 0 5 class 475962 564 Caldilineales 3 1 0 4 475963 order Caldilineaceae 561 4 0 1 family 475964 3 2 233191 genus 1 0 9 557 Caldilinea 133453 species 1 0 548 Caldilinea aerophila 1 0 10 32061 class 2083 Chloroflexia 2 0 1 32064 order 9 2081 Chloroflexales 7 0 suborder 1508594 4 1105 0 1106 family 4 1105 Chloroflexus 1105 3 0 1 genus 1107 4 248 Chloroflexus aggregans 1 152260 species 0 854 Chloroflexus aurantiacus 427 1 0 2 1108 species Chloroflexus sp. Y-400-fl 427 0 strain 480224 1 969 4 suborder 1508595 0 969 Roseiflexaceae 4 1 0 4 1508635 family 4 965 Roseiflexus 120961 genus 3 0 1 541 Roseiflexus castenholzii 1 120962 species 0 0 no rank 2609473 1 420 Roseiflexus sp. RS-1 420 1 species 357808 0 2 Thermomicrobia 669 8 class 189775 1 0 463 0 85000 subclass 4 19 463 Sphaerobacterales 4 85001 order 1 0 444 0 suborder 255728 3 1 0 3 family 85002 Sphaerobacteraceae 444 1 443 Sphaerobacter 2 0 1 2056 genus 2 Sphaerobacter thermophilus 441 0 1 species 2057 204 3 189776 order 0 0 1 family 189777 3 Thermomicrobiaceae 204 2 1 Thermomicrobium 202 genus 499 2 0 1 500 species 1 0 201 Thermomicrobium roseum 9 Dehalococcoidia 2584 class 301297 8 0 1 1 Dehalococcoidales 2009 5 order 1202465 1 0 1 0 4 1202464 family 2008 Dehalococcoidaceae 3 3 genus 61434 1 0 3 Dehalococcoides 2005 252 237581 no rank 1 0 252 Dehalococcoides sp. UCH007 0 1522671 species 1 1750 Dehalococcoides mccartyi 1 61435 species 0 genus 670486 2 0 566 Dehalogenimonas lykanthroporepellens 247 0 1 species 552810 1 1839801 species 0 319 Dehalogenimonas formicexedens 34 phylum 1297 0 11439 11439 Deinococci 76 1 0 34 188787 class 6795 Deinococcales 86 1 0 15 118964 order 1 0 14 183710 family 6709 Deinococcaceae 65 genus 1298 13 0 1 86 Deinococcus 6644 1 species 502394 0 Deinococcus gobiensis 628 Deinococcus swuensis 746 0 1 species 1182571 442 Deinococcus geothermalis 68909 species 1 0 0 1 species 1299 Deinococcus radiodurans 436 525 2623546 no rank 1 0 0 species 2080419 1 Deinococcus sp. NW-56 525 Deinococcus deserti 432 species 310783 1 0 1 species 309887 0 Deinococcus maricopensis 593 species 55148 1 0 Deinococcus proteolyticus 833 506 Deinococcus soli Cha et al. 2016 1 1309411 species 0 0 1 1768108 species 607 Deinococcus actinosclerus 0 1 432329 species 429 Deinococcus peraridilitoris Deinococcus puniceus 381 1 species 1182568 0 70 Thermales 4242 16 order 68933 1 0 4172 Thermaceae 26 1 0 15 188786 family 746 Meiothermus 2 0 1 65551 genus 3 0 1 species 52022 Meiothermus silvanus 347 Meiothermus ruber 397 species 277 1 0 Oceanithermus 602 4 1 0 2 genus 208447 1 species 187137 0 Oceanithermus profundus 598 genus 270 8 0 1 44 Thermus 2555 species 37636 1 0 Thermus scotoductus 301 Thermus aquaticus 327 1 species 271 0 267 0 1 2619321 no rank Thermus sp. CCB_US3_UF1 267 0 1 species 1111069 280 Thermus oshimai 56957 species 1 0 0 1 species 56956 Thermus brockianus 143 1 456163 species 0 340 Thermus parvatiensis 1 species 274 0 Thermus thermophilus 853 186191 genus 1 0 243 0 1 186192 species 243 Marinithermus hydrothermalis 0 2762275 order 2 326 1 326 Trueperaceae 2 332247 family 1 0 325 0 332248 genus 1 0 332249 species 1 325 Truepera radiovictrix 100 544448 phylum 1 0 2 15677 Tenericutes 1165 713063 no rank 2 0 1911684 species 1 0 600 Tenericutes bacterium MO-XQ 565 Tenericutes bacterium MZ-XQ 0 1911683 species 1 0 1 31969 class 96 14042 Mollicutes 12 1 0 13 order 186329 Acholeplasmatales 2067 2 2146 family 12 0 1 5 2065 Acholeplasmataceae Acholeplasma 1530 10 0 1 genus 2147 5 Acholeplasma oculi 391 0 species 35623 1 403 Acholeplasma brassicae 1 61635 species 0 Acholeplasma palmae 385 0 1 species 38986 Acholeplasma laidlawii 341 1 species 2148 0 4 Candidatus Phytoplasma 530 genus 33926 6 0 1 3 species group 85620 0 296 1 229545 species 0 113 Aster yellows witches'-broom phytoplasma 58 Maize bushy stunt phytoplasma 202462 species 1 0 125 Onion yellows phytoplasma 0 1 100379 species 140 species group 85632 1 0 Candidatus Phytoplasma australiense 140 species 59748 1 0 90 1 85630 species group 0 Candidatus Phytoplasma mali 90 0 1 species 37692 43 order 2085 1 0 7 Mycoplasmatales 5760 10 Mycoplasmataceae 5753 family 2092 42 0 1 0 genus 2129 2 254 0 134821 species 1 136 Ureaplasma parvum species 2130 1 0 Ureaplasma urealyticum 118 42 3733 Mycoplasma 2093 genus 27 0 1 41 Mycoplasma haemofelis 29501 species 1 0 2099 species 1 0 185 Mycoplasma hyopneumoniae species 50052 1 0 Mycoplasma crocodyli 196 Mycoplasma arthritidis 82 0 species 2111 1 51 Mycoplasma pneumoniae 0 1 2104 species 0 1 29554 species 125 Mycoplasma canadense 1 species 2123 0 Mycoplasma putrefaciens 153 species 2097 1 0 Mycoplasma genitalium 73 Mycoplasma yeatsii 143 1 species 51365 0 41 Mycoplasma parvum 984991 species 1 0 202 Mycoplasma hominis 0 1 2098 species 957 0 3 656088 species group Mycoplasma capricolum 263 1 species 2095 0 0 1 species 2105 Mycoplasma leachii 224 1 species 2102 0 Mycoplasma mycoides 470 species 57372 1 0 Mycoplasma suis 107 125 0 1 2683645 no rank species 1749074 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) 125 Mycoplasma ovis 19 0 1 species 171632 1 136241 species 0 46 Mycoplasma haemocanis Mycoplasma flocculare 119 1 species 2128 0 Mycoplasma bovoculi 93 0 1 species 45362 0 1 2118 species 128 Mycoplasma mobile 101 Mycoplasma dispar 86660 species 1 0 Mycoplasma penetrans 363 1 species 28227 0 1 species 2100 0 Mycoplasma hyorhinis 158 172 Mycoplasma gallisepticum 0 2096 species 1 1 65123 species 0 11 Mycoplasma wenyonii 0 12 2767358 genus 1756 0 species 2109 1 Mycoplasma synoviae 176 259 Mycoplasma agalactiae 0 2110 species 1 Mycoplasma bovirhinis 102 species 29553 1 0 Mycoplasma bovis 220 1 species 28903 0 2107 species 1 0 150 Mycoplasma pulmonis 1 species 2112 0 Mycoplasma bovigenitalium 122 48003 species 1 0 111 Mycoplasma pullorum 160 Mycoplasma fermentans 2115 species 1 0 86 Mycoplasma californicum 2113 species 1 0 1 29555 species 0 146 Mycoplasma canis 0 2094 species 1 71 Mycoplasma arginini Mycoplasma cynos 153 0 species 171284 1 order 186328 39 0 1 11 Entomoplasmatales 6203 4143 Spiroplasmataceae 5 0 1 2131 family 24 0 1 2132 genus 23 4138 Spiroplasma 36 species 362837 1 0 Spiroplasma cantharicola 240 1 species 216935 0 Spiroplasma culicicola 218 species 2144 1 0 Spiroplasma mirum 147 145 Spiroplasma monobiae 0 2136 species 1 Spiroplasma syrphidicola 135 0 1 species 216945 Spiroplasma diminutum 122 0 species 216936 1 Spiroplasma chrysopicola 177 1 species 216933 0 0 1 species 216938 Spiroplasma helicoides 252 125 Spiroplasma floricola 216937 species 1 0 196 Spiroplasma corruscae 0 216934 species 1 155 Spiroplasma kunkelii 0 47834 species 1 Spiroplasma taiwanense 122 0 1 species 2145 0 2139 species 1 176 Spiroplasma clarkii Spiroplasma litorale 287 species 216942 1 0 187 Spiroplasma eriocheiris 0 1 315358 species 1 1114980 species 0 152 Spiroplasma atrichopogonis 0 1 species 216946 Spiroplasma turonicum 260 165 Spiroplasma citri 2133 species 1 0 Spiroplasma apis 98 0 species 2137 1 612 0 no rank 2637901 2 306 Spiroplasma sp. TU-14 0 1 1898044 species 306 Spiroplasma sp. NBRC 100390 1914410 species 1 0 Spiroplasma sabaudiense 131 species 216944 1 0 2 2049 Entomoplasmataceae 14 33925 family 1 0 29 Mesoplasma 1527 8 genus 46239 1 0 0 species 138853 1 Mesoplasma lactucae 266 0 1 species 225999 Mesoplasma syrphidae 220 298 Mesoplasma florum 0 1 2151 species 183 Mesoplasma chauliocola 0 1 216427 species Mesoplasma tabanidae 128 0 species 219745 1 229 Mesoplasma entomophilum 1 2149 species 0 Mesoplasma coleopterae 174 0 1 species 324078 Entomoplasma 520 24 0 1 genus 46238 5 0 species 214888 1 Entomoplasma luminosum 122 1 81459 species 0 173 Entomoplasma melaleucae 0 1 species 74700 Entomoplasma freundtii 82 119 Entomoplasma somnilux 1 215578 species 0 468 0 1 2799557 no rank 0 1 genus 1912503 468 468 1 no rank 2624196 0 Candidatus Izimaplasma sp. HR1 468 0 1 species 1541959 33827 138 1798711 clade 0 Cyanobacteria 33827 3 0 1 phylum 1117 138 52604 order 4 0 1 4 985 Pleurocapsales 0 1890500 family 1 324 324 0 1 44474 genus species 54308 1 0 Pleurocapsa minor 324 657 family 1890498 2 0 0 genus 102115 2 657 2642663 no rank 1 0 278 species 1807358 1 0 Stanieria sp. NIES-3757 278 Stanieria cyanosphaera 379 species 102116 1 0 1 0 6 class 307596 Gloeobacteria 994 10 0 1 307595 order 5 984 Gloeobacterales 9 1 0 4 1890422 family 975 Gloeobacteraceae 7 genus 33071 3 0 1 18 Gloeobacter 968 1 1416614 species 0 447 Gloeobacter kilaueensis 1 33072 species 0 503 Gloeobacter violaceus 1161 order 32 0 1 10 9640 Nostocales 2961 0 8 family 2661849 8 genus 1186 1 0 20 Calothrix 2961 Calothrix parietina 424 0 1 species 32054 2517 2619626 no rank 6 0 1 species 2005469 0 Calothrix sp. NIES-4071 568 0 1954171 species 1 375 Calothrix sp. NIES-2098 Calothrix sp. NIES-4101 494 species 2005461 1 0 321 Calothrix sp. PCC 7507 0 1 99598 species Calothrix sp. 336/3 488 species 1337936 1 0 Calothrix sp. NIES-3974 271 species 2005462 1 0 5409 Nostocaceae 11 0 1 1162 family 17 2 genus 264688 0 587 0 1 264691 species 262 Trichormus variabilis 1164 species 1 0 325 Trichormus azollae Anabaena 1206 2 0 1 genus 1163 4 0 species 1165 1 Anabaena cylindrica 357 2 2619674 no rank 0 847 436 Anabaena sp. 90 46234 species 1 0 Anabaena sp. WA102 411 1 species 1647413 0 8 3605 Nostoc 10 1177 genus 1 0 Nostoc punctiforme 591 1 species 272131 0 7 2593658 no rank 0 2335 Nostoc sp. PCC 7107 242 species 317936 1 0 0 species 1751286 1 Nostoc sp. NIES-3756 292 0 1261031 species 1 378 Nostoc sp. 'Peltigera membranacea cyanobiont N6' Nostoc sp. PCC 7524 307 species 28072 1 0 0 1 species 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 498 277 Nostoc sp. CENA543 1 1869241 species 0 0 1 species 103690 Nostoc sp. PCC 7120 341 1 1306274 species 0 671 Nostoc flagelliforme 321 no rank 1219117 1 0 321 Nostocales cyanobacterium HT-58-2 0 1940762 species 1 381 2 family 1892263 0 1 381 Fischerella 2 1190 genus 1 0 494603 no rank 1 0 380 1 species 1752063 0 Fischerella sp. NIES-3754 380 1 0 3 family 1185 Rivulariaceae 558 2 556 Rivularia 2 1 0 2 373984 genus 554 1 no rank 2676603 0 0 1 373994 species 554 Rivularia sp. PCC 7116 0 1301283 subclass 38 8167 1 0 22 order 1118 Chroococcales 4975 3 4 family 1890449 1 0 7 Microcystaceae 771 1 0 3 genus 1125 Microcystis 764 2 2643300 no rank 1 0 233 0 1 1967666 species 233 Microcystis sp. MC19 529 Microcystis aeruginosa 0 1 1126 species 2043 8 1890450 family 0 799 0 genus 28070 2 369 2546359 species 1 0 369 Cyanothece sp. PCC 7822 497965 strain 1 0 0 species 2546356 1 430 Cyanothece sp. PCC 7424 430 0 1 strain 65393 92682 no rank 2 0 303 35 303 Halothece 2 76023 genus 1 0 1 no rank 2632878 0 268 268 Halothece sp. PCC 7418 1 65093 species 0 263 0 genus 263510 1 263 0 1 2546360 species strain 43989 1 0 Cyanothece sp. ATCC 51142 263 0 2546365 genus 2 522 522 0 2546366 species 2 41431 strain 1 0 245 Cyanothece sp. PCC 8801 Cyanothece sp. PCC 8802 277 strain 395962 1 0 0 1453359 genus 1 156 Candidatus Atelocyanobacterium thalassa 156 species 713887 1 0 Chroococcaceae 1382 6 1 0 8 family 1890464 genus 669357 3 0 1 4 Geminocystis 894 890 0 2 2625037 no rank Geminocystis sp. NIES-3708 595 0 species 1615909 1 295 Geminocystis sp. NIES-3709 1617448 species 1 0 1 0 2 genus 268175 Chondrocystis 235 1 234 1 no rank 2648896 0 0 2005460 species 1 234 Chondrocystis sp. NIES-4102 genus 102231 2 0 1 2 Gloeocapsa 247 245 no rank 2623012 1 0 1 species 1173026 0 Gloeocapsa sp. PCC 7428 245 776 family 1890452 1 0 776 0 genus 102234 1 1 379064 species 0 776 Cyanobacterium aponinum 14 Oscillatoriales 3192 order 1150 16 0 1 1892251 family 2 0 1 5 361 Coleofasciculaceae 356 0 1 genus 63132 356 0 1 no rank 2648775 356 Geitlerinema sp. PCC 7407 1173025 species 1 0 Cyanothecaceae 296 2 1 0 3 family 1892249 1 0 2 43988 genus 294 Cyanothece 13 281 no rank 2649277 1 0 0 species 395961 1 Cyanothece sp. PCC 7425 281 1 0 5 1892254 family 1469 Oscillatoriaceae 3 4 Oscillatoria 1035 3 genus 1158 1 0 0 species 482564 1 Oscillatoria nigro-viridis 542 489 Oscillatoria acuminata 0 1 118323 species 431 0 genus 1155738 1 431 Moorea producens 1 1155739 species 0 0 1892255 family 2 306 1 Crinalium 306 genus 241421 2 0 1 Crinalium epipsammum 305 1 species 241425 0 3 family 1892252 0 746 427 0 1 1205 genus 0 species 1206 1 Trichodesmium erythraeum 427 0 1 genus 44471 2 Microcoleus 319 3 2642155 no rank 1 0 316 0 species 1173027 1 Microcoleus sp. PCC 7113 316 0 1 1890424 order 53 13596 Synechococcales 97 345 0 1 2303730 family 345 0 170610 genus 1 1 species 1209493 0 Halomicronema hongdechloris 345 0 1 family 1890426 33 Synechococcaceae 8751 25 141 Synechococcus 6845 genus 1129 26 0 1 species 33070 1 0 Synechococcus lividus 172 270 Synechococcus elongatus 32046 species 1 0 0 no rank 2626047 23 6262 136 Synechococcus sp. CC9311 64471 species 1 0 1 1827144 species 0 228 Synechococcus sp. NIES-970 species 585425 1 0 Synechococcus sp. KORDI-52 270 0 1 316279 species 131 Synechococcus sp. CC9902 236 Synechococcus sp. PCC 8807 0 195248 species 1 0 1 species 1350461 Synechococcus sp. UTEX 2973 285 0 1 species 166314 Synechococcus sp. WH 8109 301 240 Synechococcus sp. WH 8103 0 29410 species 1 295 Synechococcus sp. RCC307 1 316278 species 0 195253 species 1 0 164 Synechococcus sp. PCC 6312 0 1 species 321332 Synechococcus sp. JA-2-3B'a(2-13) 432 374981 species 1 0 200 Synechococcus sp. PCC 7003 0 1 32049 species 290 Synechococcus sp. PCC 7002 203 Synechococcus sp. KORDI-100 0 1 1280380 species 0 1 species 110662 Synechococcus sp. CC9605 359 553 Synechococcus sp. JA-3-3Ab 321327 species 1 0 333 Synechococcus sp. PCC 7502 1173263 species 1 0 354 Synechococcus sp. KORDI-49 0 585423 species 1 Synechococcus sp. WH 8102 242 0 1 species 84588 0 32051 species 1 274 Synechococcus sp. WH 7803 0 species 195498 1 Synechococcus sp. PCC 7117 231 352 Synechococcus sp. SynAce01 0 1 1916956 species Synechococcus sp. PCC 73109 153 0 1 species 374982 248 1 genus 146785 0 0 1 species 146786 Thermosynechococcus elongatus 248 genus 167375 3 0 1 7 Cyanobium 1376 Cyanobium gracile 756 1 species 59930 0 613 0 1 2627006 no rank 613 Cyanobium sp. NIES-981 1851505 species 1 0 Dactylococcopsis 257 35 1 0 2 genus 13034 222 Dactylococcopsis salina 1 292566 species 0 365 0 1 family 1890429 1 genus 155977 0 365 Acaryochloris marina 365 0 1 species 155978 Leptolyngbyaceae 1332 4 1 0 6 family 1890438 genus 47251 5 0 1 5 Leptolyngbya 1328 no rank 2650499 3 0 1025 Leptolyngbya sp. O-77 393 0 species 1080068 1 0 1 species 1752064 Leptolyngbya sp. NIES-3755 419 species 111781 1 0 Leptolyngbya sp. PCC 7376 213 298 Leptolyngbya boryana 1 1184 species 0 0 family 1213 4 1667 1218 genus 4 0 1 1 1667 Prochlorococcus 1238 Prochlorococcus marinus 1 1219 species 0 428 2627481 no rank 2 0 1501269 species 1 0 187 Prochlorococcus sp. MIT 0801 0 1 species 1501268 Prochlorococcus sp. MIT 0604 241 0 1 family 1890436 3 Pseudanabaenaceae 286 1 0 1 1152 genus 2 285 Pseudanabaena 2 283 no rank 2593292 1 0 283 Pseudanabaena sp. PCC 7367 82654 species 1 0 0 4 1890428 family 753 8 Synechocystis 753 4 genus 1142 1 0 745 0 2640012 no rank 3 260 Synechocystis sp. PCC 6803 0 1148 species 1 2116702 species 1 0 260 Synechocystis sp. IPPAS B-1465 225 Synechocystis sp. PCC 6714 1 1147 species 0 0 no rank 1983111 1 247 cyanobacterium endosymbiont of Epithemia turgida 247 0 species 718217 1 1 Chroococcidiopsidales 195 3 order 1890505 1 0 0 2 family 1890528 194 54298 genus 2 0 1 2 194 Chroococcidiopsis 192 Chroococcidiopsis thermalis 0 54299 species 1 31 Actinobacteria 342404 644 phylum 201174 1 0 1 0 591 1760 class 303931 Actinobacteria 1554 1 0 3 order 622452 Kineosporiales 487 2 2 family 83778 1 0 9 Kineosporiaceae 485 1 genus 33981 0 476 1 131568 species 0 476 Kineococcus radiotolerans 115 0 52018 no rank 1 1650658 species 1 0 115 Actinobacteria bacterium IMCC26256 17996 Pseudonocardiales 45 0 1 85010 order 41 17951 Pseudonocardiaceae 228 0 1 2070 family 40 Lentzea 724 2 0 1 genus 165301 2 0 1 species 1586287 Lentzea guizhouensis 722 2 2071 genus 1 0 9 702 Saccharothrix 0 1 species 103731 Saccharothrix espanaensis 693 7 genus 1813 1 0 83 Amycolatopsis 4904 31958 species 1 0 1290 Amycolatopsis orientalis 1 208439 species 0 627 Amycolatopsis japonica 0 1 species 1814 Amycolatopsis methanolica 659 1397 no rank 2618356 2 0 Amycolatopsis sp. BJA-103 599 species 1911175 1 0 0 1 1896961 species 798 Amycolatopsis sp. AA4 33910 species 1 0 848 Amycolatopsis mediterranei Alloactinosynnema 507 1 0 1 genus 674734 2 506 no rank 2636053 1 0 506 Alloactinosynnema sp. L-07 1653480 species 1 0 1 0 2 genus 1835 Saccharopolyspora 699 5 0 1 1836 species 694 Saccharopolyspora erythraea 2029 genus 2 0 1 1 673 Kibdelosporangium Kibdelosporangium phytohabitans 672 0 species 860235 1 2 genus 142577 1 0 1 Prauserella 381 0 1 530584 species 380 Prauserella marina 1 0 3 40566 genus 1572 Actinosynnema 40 species 40567 1 0 Actinosynnema mirum 732 800 Actinosynnema pretiosum 0 42197 species 1 8 genus 1847 1 0 52 Pseudonocardia 3399 606 Pseudonocardia dioxanivorans 240495 species 1 0 2741 no rank 2619320 6 0 Pseudonocardia sp. EC080619-01 477 species 1096856 1 0 1688404 species 1 0 483 Pseudonocardia sp. EC080610-09 species 1690815 1 0 Pseudonocardia sp. HH130630-07 502 0 1 species 1096868 Pseudonocardia sp. EC080625-04 366 0 1 445576 species 439 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. HH130629-09 474 0 1 species 1641402 384 1851 genus 1 0 0 1 1852 species 384 Saccharomonospora viridis genus 65496 6 0 1 40 Actinoalloteichus 2886 0 no rank 2644606 2 1214 Actinoalloteichus sp. GBA129-24 697 1 species 1612551 0 517 Actinoalloteichus sp. AHMU CJ021 2072503 species 1 0 557 Actinoalloteichus hoggarensis 0 1470176 species 1 1 species 1612552 0 Actinoalloteichus sp. ADI127-7 667 408 Actinoalloteichus hymeniacidonis 0 340345 species 1 genus 43356 2 0 1 1 Kutzneria 892 Kutzneria albida 891 0 1 species 43357 143 order 85006 1 0 328 Micrococcales 35474 1 0 6 family 85016 Cellulomonadaceae 1162 4 1158 Cellulomonas 20 1 0 5 1707 genus 338 Cellulomonas flavigena 0 1 1711 species 185 Cellulomonas gilvus 11 species 1 0 275 0 1 2620175 no rank 0 species 2003551 1 Cellulomonas sp. PSBB021 275 1 species 1708 0 Cellulomonas fimi 340 11730 Microbacteriaceae 167 1 0 49 85023 family 1 Rathayibacter 451 3 genus 33886 1 0 Rathayibacter toxicus 191 species 145458 1 0 259 Rathayibacter tritici 0 1 33888 species 1 0 2 genus 1759331 Cnuibacter 292 2 1 species 1619308 0 Cnuibacter physcomitrellae 290 2 447237 genus 1 0 3 311 Frondihabitans 1 no rank 2626248 0 308 308 Frondihabitans sp. PAMC 28766 0 1 1795630 species 1 Microterricola 377 genus 518733 2 0 1 0 412690 species 1 376 Microterricola viridarii 0 1 genus 2034 4 Curtobacterium 1136 29 0 2 257496 no rank 724 0 1 1561023 species 355 Curtobacterium sp. MR_MD2014 0 1 species 1905847 Curtobacterium sp. BH-2-1-1 369 383 Curtobacterium pusillum 69373 species 1 0 90 Microbacterium 4274 14 genus 33882 1 0 84292 species 1 0 200 Microbacterium chocolatum 305 Microbacterium testaceum 0 1 2033 species 2587 8 no rank 2609290 0 311 Microbacterium sp. 1.5R 1 1916917 species 0 0 1906742 species 1 344 Microbacterium sp. BH-3-3-3 0 species 1714373 1 Microbacterium sp. No. 7 396 335 Microbacterium sp. XT11 1 367477 species 0 259 Microbacterium sp. str. 'China' 1 2103230 species 0 278 Microbacterium sp. CGR1 1 1696072 species 0 0 1 species 1795053 Microbacterium sp. PAMC 28756 397 0 1938334 species 1 267 Microbacterium sp. TPU 3598 340 Microbacterium hominis 162426 species 1 0 0 36805 species 1 425 Microbacterium aurum Microbacterium paludicola 327 species 300019 1 0 0 1 genus 110932 2 Leifsonia 827 3 824 Leifsonia xyli 1 1575 species 0 1 0 2 33877 genus 535 Agromyces 9 Agromyces aureus 526 1 species 453304 0 genus 337004 2 0 1 1 Microcella 337 Microcella alkaliphila 336 0 1 species 279828 3 1655488 no rank 0 310 3 1655489 clade 0 310 1 310 Rhodoluna 3 529883 genus 1 0 152 Candidatus Rhodoluna planktonica 0 1 535712 species 157 Rhodoluna lacicola 529884 species 1 0 145 1 genus 1434032 0 0 1 species 1159327 Pontimonas salivibrio 145 2 1705353 genus 1 0 1 126 Aurantimicrobium 1 species 708131 0 Aurantimicrobium minutum 125 Clavibacter 1470 44 0 1 genus 1573 6 5 28447 species 1 0 257 1426 Clavibacter michiganensis 315 Clavibacter insidiosus 33014 subspecies 1 0 subspecies 31963 1 0 Clavibacter nebraskensis 290 1 31964 subspecies 0 286 Clavibacter sepedonicus 278 Clavibacter capsici 1 1874630 subspecies 0 10 972 Cryobacterium 3 69578 genus 1 0 Cryobacterium arcticum 437 0 species 670052 1 525 1 2649013 no rank 0 525 Cryobacterium sp. LW097 1 1978566 species 0 21 Promicromonosporaceae 2097 family 85017 9 0 1 0 1 genus 254250 3 Isoptericola 677 4 Isoptericola variabilis 330 1 species 139208 0 343 Isoptericola dokdonensis 1 372663 species 0 526 Xylanimonas 1 0 1 186188 genus 2 186189 species 1 0 525 Xylanimonas cellulosilytica 4 Cellulosimicrobium 873 3 genus 157920 1 0 species 1710 1 0 Cellulosimicrobium cellulans 447 422 1 no rank 2624466 0 422 Cellulosimicrobium sp. TH-20 1980001 species 1 0 0 85022 family 2 146 3 146 Jonesia 2 43673 genus 1 0 Jonesia denitrificans 143 species 43674 1 0 145360 family 2 0 325 Sanguibacter 325 9 0 1 genus 60919 2 0 1 60920 species 316 Sanguibacter keddieii 13 Dermacoccaceae 1142 family 145357 6 0 1 Kytococcus 372 8 1 0 2 genus 57499 0 species 1276 1 Kytococcus sedentarius 364 Dermacoccus 349 3 1 0 2 genus 57495 1 1274 species 0 346 Dermacoccus nishinomiyaensis genus 745364 1 0 408 0 571913 species 1 408 Luteipulveratus mongoliensis 1 0 11 family 85020 Dermabacteraceae 2468 14 2028 Brachybacterium 57 0 1 43668 genus 6 412 0 1 2623841 no rank 0 1 1903186 species 412 Brachybacterium sp. P6-10-X1 Brachybacterium sp. VM2412 403 1 species 2017484 0 0 1 species 43669 Brachybacterium faecium 358 404 Brachybacterium ginsengisoli 0 1331682 species 1 394 Brachybacterium sp. VR2415 0 1 2017485 species 472568 genus 2 0 1 1 209 Devriesea 1 472569 species 0 208 Devriesea agamarum 1 0 2 36739 genus 217 Dermabacter 2 species 1630135 1 0 Dermabacter vaginalis 215 1072 13512 Micrococcaceae 39 1268 family 1 0 219 0 genus 2078575 1 219 Arthrobacter sp. IHBB 11108 1 1618207 species 0 genus 1645 1 0 136 0 1 species 1646 Renibacterium salmoninarum 136 1 0 2 1269 genus 418 Micrococcus 3 415 Micrococcus luteus 0 1 1270 species Arthrobacter 6287 91 1 0 15 genus 1663 598 Arthrobacter crystallopoietes 0 37928 species 1 0 656366 species 1 646 Arthrobacter alpinus 4952 235627 no rank 12 0 Arthrobacter sp. YC-RL1 460 1 species 1652545 0 1 species 2020486 0 Arthrobacter sp. YN 350 0 1 species 290399 Arthrobacter sp. FB24 414 1690248 species 1 0 546 Arthrobacter sp. LS16 2079227 species 1 0 370 Arthrobacter sp. PGP41 479 Arthrobacter sp. QXT-31 0 1357915 species 1 Arthrobacter sp. PAMC 25486 417 0 species 1494608 1 species 1118963 1 0 Arthrobacter sp. Rue61a 369 species 1806905 1 0 Arthrobacter sp. ZXY-2 323 Arthrobacter sp. U41 431 0 species 1849032 1 0 1 species 1704044 Arthrobacter sp. ERGS1:01 461 332 Arthrobacter sp. ATCC 21022 1 1771959 species 0 2 441 Paenarthrobacter 2 1742992 genus 1 0 439 Paenarthrobacter aurescens 43663 species 1 0 12 1208 Kocuria 57493 genus 4 0 1 0 1 71999 species 386 Kocuria palustris 384 Kocuria rhizophila 0 72000 species 1 446860 species 1 0 426 Kocuria flava 596707 genus 2 0 1 18 433 Sinomonas 1 species 37927 0 Sinomonas atrocyanea 415 1030 Rothia 11 1 0 3 32207 genus 1 43675 species 0 759 Rothia mucilaginosa 1 species 2047 0 Rothia dentocariosa 260 Glutamicibacter 695 1 0 1 genus 1742989 2 0 1 256701 species 694 Glutamicibacter arilaitensis 1868332 genus 2 0 1 14 340 Neomicrococcus 326 Neomicrococcus aestuarii 0 1 556325 species 1233 Pseudarthrobacter 11 1 0 4 1742993 genus Pseudarthrobacter phenanthrenivorans 367 0 1 species 361575 Pseudarthrobacter chlorophenolicus 382 0 species 85085 1 0 1 121292 species 473 Pseudarthrobacter sulfonivorans 1 595 Brevibacteriaceae 85019 family 3 0 1 1 0 2 genus 1696 Brevibacterium 594 14 0 species 1703 1 Brevibacterium linens 580 9 family 85021 1 0 21 Intrasporangiaceae 1379 genus 267408 2 0 1 1 Arsenicicoccus 423 422 no rank 2663846 1 0 Arsenicicoccus sp. oral taxon 190 422 0 1 species 1658671 2 Intrasporangium 283 2 genus 53357 1 0 0 53358 species 1 281 Intrasporangium calvum 2 Janibacter 234 genus 53457 2 0 1 0 1 species 857417 Janibacter indicus 232 0 1 265976 genus 2 418 Serinicoccus 9 Serinicoccus sp. JLT9 409 0 1 species 1758689 2 577468 no rank 0 52 52 Tropheryma 3 1 0 2 2038 genus 0 2039 species 1 49 Tropheryma whipplei 375 125316 family 2 0 5 375 Beutenbergia 84756 genus 2 0 1 370 Beutenbergia cavernae 84757 species 1 0 163 2 family 85018 0 2 1862 genus 1 0 3 163 Dermatophilus 160 Dermatophilus congolensis 1863 species 1 0 376 3 622450 order 0 376 Actinopolysporaceae 1 1 0 3 622451 family 2 375 Actinopolyspora 2 1849 genus 1 0 Actinopolyspora erythraea 373 1 species 414996 0 order 1643684 3 0 607 13 607 Nakamurellaceae 3 85031 family 1 0 2 genus 53460 1 0 5 Nakamurella 594 589 Nakamurella multipartita 0 1 53461 species Candidatus Nanopelagicales 1401 8 1 0 12 order 2039638 family 2162846 11 0 1393 0 1 622681 genus 7 1088 Candidatus Planktophila 17 species 1884904 1 0 Candidatus Planktophila sulfonica 191 species 1884905 1 0 Candidatus Planktophila versatilis 257 Candidatus Planktophila limnetica 82 1 species 573600 0 Candidatus Planktophila lacus 219 0 species 1884913 1 1 1884907 species 0 146 Candidatus Planktophila vernalis 0 1884914 species 1 176 Candidatus Planktophila dulcis 0 1 genus 2039639 4 Candidatus Nanopelagicus 305 2 0 1 species 1884915 Candidatus Nanopelagicus hibericus 124 91 Candidatus Nanopelagicus limnes 0 1884634 species 1 species 1884916 1 0 Candidatus Nanopelagicus abundans 88 1643683 order 3 0 222 85032 family 3 0 1 1 222 Acidothermaceae 221 Acidothermus 5 1 0 2 28048 genus Acidothermus cellulolyticus 216 species 28049 1 0 117 Streptomycetales 51724 order 85011 82 0 1 416 51607 Streptomycetaceae 2062 family 81 0 1 Streptomyces 48369 1498 1 0 75 genus 1883 766 Streptomyces cattleya 1 29303 species 0 796 Streptomyces bingchenggensis 1 379067 species 0 1 1169025 species 0 383 Streptomyces pratensis species 38300 1 0 Streptomyces pristinaespiralis 603 Streptomyces xiamenensis 504 0 species 408015 1 Streptomyces pluripotens 457 1 species 1355015 0 362257 species 1 0 675 Streptomyces vietnamensis 0 1 68570 species 626 Streptomyces albulus 1935 species 1 0 450 Streptomyces violaceoruber 0 1 553510 species 660 Streptomyces gilvosporeus 0 1477431 species group 2 1125 species 42239 1 0 Streptomyces sampsonii 628 species 1902 1 0 Streptomyces coelicolor 497 0 species 1940 1 Streptomyces albireticuli 479 Streptomyces chartreusis 550 0 1 species 1969 33903 species 1 0 540 Streptomyces avermitilis 68280 species 1 0 847 Streptomyces violaceusniger 1 1971 species 0 659 Streptomyces noursei 0 1 193462 species 476 Streptomyces niveus 0 1 67267 species 683 Streptomyces alboflavus 659 Streptomyces alfalfae 1642299 species 1 0 2 629295 species group 0 951 0 1482558 species subgroup 1 474 1 1908 species 0 474 Streptomyces globisporus species subgroup 1482596 1 0 477 477 Streptomyces griseus 1911 species 1 0 0 1 1930 species 610 Streptomyces scabiei 841 Streptomyces lincolnensis 1 1915 species 0 0 1783515 species 1 577 Streptomyces sp. S10(2016) 390 Streptomyces fulvissimus 68202 species 1 0 Streptomyces lavendulae 486 1 species 1914 0 Streptomyces malaysiensis 883 0 1 species 92644 2049881 species 1 0 493 Streptomyces sp. XZHG99 493 Streptomyces collinus 0 1 42684 species 0 1 1888 species 1220 Streptomyces albus no rank 2593676 24 0 13768 491 Streptomyces sp. 3211 1 1964449 species 0 621 Streptomyces sp. TN58 234612 species 1 0 0 1661694 species 1 522 Streptomyces sp. Tue 6075 512 Streptomyces sp. PAMC 26508 1265601 species 1 0 520 Streptomyces sp. Sge12 0 1 1972846 species 1 206662 species 0 681 Streptomyces sp. FR-008 Streptomyces sp. CFMR 7 526 1 species 1649184 0 739 Streptomyces sp. 769 0 1262452 species 1 Streptomyces sp. RTd22 818 1 species 1841249 0 Streptomyces sp. S8 399 species 1837283 1 0 578 Streptomyces sp. Mg1 0 465541 species 1 684 Streptomyces sp. CdTB01 1725411 species 1 0 0 1561022 species 1 527 Streptomyces sp. CCM_MD2014 456 Streptomyces sp. CLI2509 0 1984801 species 1 487 Streptomyces sp. SAT1 0 1849967 species 1 1 2094021 species 0 551 Streptomyces sp. WAC00288 504 Streptomyces sp. 4F 1751294 species 1 0 608 Streptomyces sp. CMB-StM0423 1 2059884 species 0 1 species 1961713 0 Streptomyces sp. MOE7 557 Streptomyces sp. SirexAA-E 325 0 1 species 862751 683 Streptomyces sp. P3 2135430 species 1 0 0 1 species 1812480 Streptomyces sp. fd1-xmd 601 826 Streptomyces sp. M56 1 1495638 species 0 Streptomyces sp. CNQ-509 552 1 species 444103 0 0 164348 species 1 650 Streptomyces puniciscabiei 1 species 1926 0 Streptomyces reticuli 665 1 146923 species 0 593 Streptomyces parvulus Streptomyces autolyticus 803 0 species 75293 1 701 Streptomyces griseochromogenes 68214 species 1 0 Streptomyces xinghaiensis 468 species 1038928 1 0 526 Streptomyces ambofaciens 1889 species 1 0 1144 Streptomyces venezuelae 1 54571 species 0 0 1 68249 species 1135 Streptomyces pactum 431 Streptomyces glaucescens 0 1907 species 1 0 species 1912 1 Streptomyces hygroscopicus 1673 0 1 species 1916 Streptomyces lividans 544 564 Streptomyces leeuwenhoekii 1437453 species 1 0 403 Streptomyces peucetius 1950 species 1 0 1 species 68192 0 Streptomyces cyaneogriseus 584 Streptomyces clavuligerus 670 0 1 species 1901 545 Streptomyces rubrolavendulae 0 1 285473 species 0 species 1616117 1 Streptomyces formicae 487 1 species 47763 0 Streptomyces lydicus 1635 40 Kitasatospora 2822 5 genus 2063 1 0 0 1 68173 species 550 Kitasatospora albolonga 1894 species 1 0 699 Kitasatospora aureofaciens 722 Kitasatospora setae 0 2066 species 1 811 no rank 2633591 1 0 Kitasatospora sp. MMS16-BH015 811 0 1 species 2018025 1643682 order 8 0 1 8 1465 Geodermatophilales 1 0 7 85030 family 1457 Geodermatophilaceae 70 2 Blastococcus 270 genus 38501 2 0 1 0 138336 species 1 268 Blastococcus saxobsidens 1 0 2 genus 88138 Modestobacter 600 7 0 1 species 477641 Modestobacter marinus 593 Geodermatophilus 517 6 1 0 2 genus 1860 0 1 1861 species 511 Geodermatophilus obscurus Micromonosporales 8282 9 1 0 19 order 85008 167 8273 Micromonosporaceae 18 28056 family 1 0 1 0 6 genus 1865 Actinoplanes 3631 32 Actinoplanes missouriensis 715 0 1 species 1866 0 1 species 196914 Actinoplanes friuliensis 795 2089 2626549 no rank 3 0 0 species 134676 1 Actinoplanes sp. SE50/110 661 0 species 2033844 1 Actinoplanes sp. SE50 661 767 Actinoplanes sp. N902-109 0 1 649831 species 51 1985 Plantactinospora 4 673534 genus 1 0 3 no rank 2631981 0 1934 Plantactinospora sp. BB1 657 species 2071627 1 0 635 Plantactinospora sp. KBS50 0 1 2024580 species Plantactinospora sp. BC1 642 species 2108470 1 0 0 1 1873 genus 4 1731 Micromonospora 35 522 Verrucosispora maris 1 1003110 species 0 612 2617518 no rank 1 0 612 Micromonospora sp. L5 648999 species 1 0 species 47850 1 0 Micromonospora aurantiaca 562 3 genus 168694 1 0 15 Salinispora 759 168697 species 1 0 422 Salinispora arenicola 168695 species 1 0 322 Salinispora tropica 2 1643818 no rank 0 399 2 399 Thermobispora 2 147067 genus 1 0 0 2006 species 1 397 Thermobispora bispora 100068 Bifidobacteriales 70 0 1 85004 order 26 4280 99998 Bifidobacteriaceae 25 31953 family 1 0 621 Gardnerella 2 1 0 2 2701 genus 0 1 2702 species 619 Gardnerella vaginalis genus 196082 2 0 1 1 Parascardovia 393 392 Parascardovia denticolens 78258 species 1 0 19 1678 genus 1 0 1475 94402 Bifidobacterium species 216816 1 0 Bifidobacterium longum 21807 895 Bifidobacterium scardovii 158787 species 1 0 species 1689 1 0 Bifidobacterium dentium 757 1 species 1687 0 Bifidobacterium coryneforme 256 Bifidobacterium choerinum 618 species 35760 1 0 4354 Bifidobacterium adolescentis 1680 species 1 0 378 Bifidobacterium actinocoloniiforme 638619 species 1 0 0 1 species 1694 Bifidobacterium pseudolongum 1004 2 species 1686 1 0 3886 Bifidobacterium catenulatum 10295 6409 Bifidobacterium kashiwanohense 1 630129 subspecies 0 388 Bifidobacterium asteroides 0 1684 species 1 species 1681 1 0 Bifidobacterium bifidum 15376 1021 Bifidobacterium angulatum 0 1 1683 species Bifidobacterium animalis 568 1 species 28025 0 Bifidobacterium indicum 272 0 species 1691 1 species 28026 1 0 Bifidobacterium pseudocatenulatum 24602 Bifidobacterium breve 9727 0 1 species 1685 33905 species 1 0 609 Bifidobacterium thermophilum genus 196081 1 0 302 Scardovia inopinata 302 0 species 78259 1 594 0 order 85014 3 0 1 85034 family 3 594 Glycomycetaceae 15 7 Stackebrandtia 579 2 genus 283810 1 0 0 283811 species 1 572 Stackebrandtia nassauensis order 85012 15 0 1 37 Streptosporangiales 5473 7 Thermomonosporaceae 674 3 family 2012 1 0 16 Thermomonospora 667 genus 2019 2 0 1 Thermomonospora curvata 651 0 species 2020 1 family 83676 6 0 1 51 Nocardiopsaceae 2532 genus 2013 4 0 1 32 Nocardiopsis 2105 595 Nocardiopsis alba 0 1 53437 species Nocardiopsis gilva 681 species 280236 1 0 797 Nocardiopsis dassonvillei 0 1 2014 species 376 0 1 83677 genus 0 species 2021 1 Thermobifida fusca 376 29 Streptosporangiaceae 2230 5 family 2004 1 0 1 0 2 83681 genus 1223 Nonomuraea 22 1 no rank 2593643 0 1201 0 1 species 1909395 Nonomuraea sp. ATCC 55076 1201 Streptosporangium 978 9 0 1 genus 2000 2 2001 species 1 0 969 Streptosporangium roseum 34 order 85009 1 0 49 Propionibacteriales 10274 99 3220 Nocardioidaceae 13 85015 family 1 0 56 Nocardioides 1252 genus 1839 4 0 1 428 2615069 no rank 1 0 1 species 196162 0 Nocardioides sp. JS614 428 0 450734 species 1 339 Nocardioides dokdonensis 2045452 species 1 0 429 Nocardioides sp. 78 1 0 2 genus 116071 Micropruina 382 1 75385 species 1 0 381 Micropruina glycogenica 1 0 2 182639 genus 643 Kribbella 9 1 182640 species 0 634 Kribbella flavida 5 321 Aeromicrobium 2040 genus 2 0 1 0 species 2041 1 Aeromicrobium erythreum 316 0 1 2044 genus 2 523 Pimelobacter 2 2045 species 1 0 521 Pimelobacter simplex 0 1 family 31957 20 Propionibacteriaceae 7005 47 genus 72763 5 0 1 40 Tessaracoccus 2170 1332264 species 1 0 632 Tessaracoccus aquimaris Tessaracoccus flavus 484 0 1 species 1610493 571 0 1 2635419 no rank 0 species 1909732 1 Tessaracoccus sp. T2.5-30 571 443 Tessaracoccus flavescens 1 399497 species 0 2 203133 genus 1 0 5 1218 Propionimicrobium 1213 0 1 no rank 2633994 1213 Propionimicrobium sp. Marseille-P3275 0 1 1871034 species 2801844 genus 1 0 465 465 Pseudopropionibacterium propionicum 0 1 1750 species 3 1743 genus 1 0 18 869 Propionibacterium 0 no rank 2608905 1 152 152 Propionibacterium sp. oral taxon 193 0 1 671223 species 0 1 1744 species 699 Propionibacterium freudenreichii 1 0 4 1912216 genus 1138 Cutibacterium 2 Cutibacterium granulosum 280 0 species 33011 1 0 33010 species 1 509 Cutibacterium avidum Cutibacterium acnes 347 1 species 1747 0 0 1 29404 genus 2 401 Microlunatus 7 1 species 29405 0 Microlunatus phosphovorus 394 4 Acidipropionibacterium 697 genus 1912215 2 0 1 Acidipropionibacterium acidipropionici 693 0 species 1748 1 425 54589 Corynebacteriales 162 85007 order 1 0 Mycobacteriaceae 19352 52 1 0 56 family 1762 621 1073531 genus 2 0 301 Mycobacterium terrae 1788 species 1 0 0 species 875328 1 Mycobacterium sinense 320 0 1 697025 genus 187 0 1 species 639313 Hoyosella subflava 187 5 genus 670516 0 1861 295 Mycobacterium immunogenum 0 1 83262 species 226 Mycobacterium chelonae 0 1774 species 1 0 1520670 species 1 316 Mycobacterium stephanolepidis 1 species 1578165 0 Mycobacterium saopaulense 252 Mycobacterium abscessus 772 0 1 species 36809 13 genus 1866885 0 5615 0 1 species 36814 Mycobacterium rhodesiae 305 0 species 1810 1 Mycobacterium vaccae 519 0 1 species 1772 Mycobacterium smegmatis 563 0 species 110539 1 Mycobacterium vanbaalenii 403 Mycobacterium phlei 510 species 1771 1 0 1 1804 species 0 338 Mycobacterium gilvum Mycobacterium chubuense 470 0 species 1800 1 468 Mycobacterium litorale 1 758802 species 0 Mycobacterium fortuitum 302 0 species 1766 1 377 Mycobacterium neoaurum 0 1 1795 species 542 Mycobacterium goodii 134601 species 1 0 0 species 1797 1 Mycobacterium thermoresistibile 359 species 1791 1 0 Mycobacterium aurum 459 Mycobacterium 11016 821 1 0 34 genus 1763 0 1 1809 species 259 Mycobacterium ulcerans Mycobacterium marinum 293 species 1781 1 0 0 1769 species 1 155 Mycobacterium leprae 4721 0 2642494 no rank 13 Mycobacterium sp. MCS 320 0 1 species 164756 401 Mycobacterium sp. YC-RL4 1682113 species 1 0 1168287 species 1 0 68 Mycobacterium sp. MOTT36Y Mycobacterium sp. NRRL B-3805 377 1 species 1570328 0 0 1 1920667 species 362 Mycobacterium sp. WY10 Mycobacterium sp. VKM Ac-1817D 293 species 1273687 1 0 0 1 1545728 species 506 Mycobacterium sp. EPa45 species 164757 1 0 Mycobacterium sp. JLS 351 270 Mycobacterium sp. QIA-37 1 1561223 species 0 357 Mycobacterium sp. PYR15 1 2051552 species 0 502 Mycobacterium sp. JS623 0 1 212767 species Mycobacterium sp. djl-10 588 0 1 species 1879023 326 Mycobacterium sp. KMS 0 1 189918 species 0 120793 species group 8 2416 Mycobacterium marseillense 221 0 species 701042 1 species 339268 1 0 Mycobacterium colombiense 431 species 1764 1 0 Mycobacterium avium 788 257 834 Mycobacterium intracellulare 4 1767 species 1 0 Mycobacterium indicus pranii 133 0 subspecies 35617 1 Mycobacterium yongonense 99 0 subspecies 1203599 1 345 Mycobacterium chimaera 0 1 222805 subspecies 142 Mycobacterium paraintracellulare 0 1138383 species 1 261524 species 1 0 254 Mycobacterium liflandii 315 Mycobacterium kansasii 1768 species 1 0 1 species 29311 0 Mycobacterium haemophilum 270 816 0 4 77643 species group 3 1773 species 1 0 230 643 Mycobacterium tuberculosis 0 biotype 1765 1 Mycobacterium bovis 206 1 33894 biotype 0 207 Mycobacterium africanum 0 1 78331 species 173 Mycobacterium canettii 446 Mycobacterium dioxanotrophicus 482462 species 1 0 0 species group 2249310 1 250 Mycobacterium shigaense 250 1 species 722731 0 1 0 4 family 85028 Tsukamurellaceae 934 8 926 Tsukamurella 12 0 1 2060 genus 3 591 Tsukamurella tyrosinosolvens 57704 species 1 0 Tsukamurella paurometabola 323 0 species 2061 1 4 196 Segniliparaceae 316606 family 3 0 1 1 0 2 genus 286801 Segniliparus 192 5 187 Segniliparus rotundus 286802 species 1 0 1 0 9 85026 family 2414 Gordoniaceae 24 31 Gordonia 2390 genus 2053 8 0 1 1 species 2054 0 Gordonia bronchialis 347 1 species 1136941 0 Gordonia phthalatica 314 0 1 species 84595 Gordonia polyisoprenivorans 297 739 2 2657482 no rank 0 374 Gordonia sp. YC-JH1 1 2059875 species 0 species 337191 1 0 Gordonia sp. KTR9 365 Gordonia iterans 284 0 species 1004901 1 378 Gordonia terrae 2055 species 1 0 1 0 52 1653 family 16939 Corynebacteriaceae 93 Corynebacterium 16846 343 1 0 51 genus 1716 Corynebacterium falsenii 332 1 species 108486 0 Corynebacterium ulcerans 347 species 65058 1 0 2 no rank 2624378 0 641 Corynebacterium sp. NML98-0116 383 species 702967 1 0 1 species 1487956 0 Corynebacterium sp. ATCC 6931 258 1 species 1727 0 Corynebacterium variabile 433 Corynebacterium terpenotabidum 228 1 species 89154 0 Corynebacterium pseudotuberculosis 230 0 species 1719 1 194 Corynebacterium cystitidis 1 35757 species 0 256 Corynebacterium callunae 1721 species 1 0 Corynebacterium ammoniagenes 301 0 1 species 1697 0 species 152794 1 Corynebacterium efficiens 407 Corynebacterium halotolerans 427 0 species 225326 1 Corynebacterium casei 397 species 160386 1 0 Corynebacterium striatum 729 0 1 species 43770 258224 species 1 0 260 Corynebacterium resistens 1 species 571915 0 Corynebacterium mustelae 186 440 Corynebacterium imitans 1 156978 species 0 1 species 38305 0 Corynebacterium vitaeruminis 460 0 1 species 191610 Corynebacterium atypicum 183 0 1705 species 1 311 Corynebacterium stationis 144 Corynebacterium kutscheri 0 1 35755 species 284 Corynebacterium ureicelerivorans 0 401472 species 1 0 1 species 161895 Corynebacterium phocae 224 395 Corynebacterium aurimucosum 0 169292 species 1 252 Corynebacterium deserti 1 1408191 species 0 Corynebacterium kroppenstedtii 248 species 161879 1 0 species 42817 1 0 Corynebacterium argentoratense 344 313 Corynebacterium lactis 0 1 1231000 species 0 1050174 species 1 273 Corynebacterium epidermidicanis 345 Corynebacterium testudinoris 1 136857 species 0 Corynebacterium simulans 415 1 species 146827 0 0 1 1404244 species 231 Corynebacterium glyciniphilum Corynebacterium urealyticum 334 0 1 species 43771 271 Corynebacterium crudilactis 1652495 species 1 0 270 Corynebacterium singulare 0 161899 species 1 1717 species 1 0 264 Corynebacterium diphtheriae 422 Corynebacterium humireducens 1 1223514 species 0 Corynebacterium sphenisci 459 species 191493 1 0 1 species 92706 0 [Brevibacterium] flavum 238 0 1230998 species 1 431 Corynebacterium frankenforstense 1 species 1718 0 Corynebacterium glutamicum 521 0 species 161896 1 Corynebacterium camporealensis 311 316 Corynebacterium flavescens 1 28028 species 0 0 1072256 species 1 334 Corynebacterium uterequi 305 Corynebacterium marinum 0 1 349751 species 0 1 575200 species 276 Corynebacterium maris 359 Corynebacterium aquilae 0 203263 species 1 Corynebacterium glaucum 307 0 species 187491 1 567 Corynebacterium jeikeium 38289 species 1 0 288 Corynebacterium doosanense 0 1 1121358 species 203 0 2 no rank 697024 Lawsonella 203 7 0 1 genus 1847725 2 196 Lawsonella clevelandensis 0 1528099 species 1 1 0 4 85029 family 561 Dietziaceae 1 23 560 Dietzia 3 37914 genus 1 0 286 2617939 no rank 1 0 286 Dietzia sp. oral taxon 368 712270 species 1 0 0 499555 species 1 251 Dietzia timorensis 0 1 family 85025 31 Nocardiaceae 13565 78 genus 1817 7 0 1 116 Nocardia 5049 1 455432 species 0 789 Nocardia terpenica 1118 Nocardia cyriacigeorgica 135487 species 1 0 Nocardia farcinica 666 0 species 37329 1 0 1 species 37330 Nocardia nova 550 1157 Nocardia brasiliensis 0 37326 species 1 653 Nocardia seriolae 37332 species 1 0 Rhodococcus 8438 367 1 0 23 genus 1827 562 Rhodococcus aetherivorans 1 191292 species 0 297 Rhodococcus fascians 0 1 1828 species species 43767 1 0 Rhodococcus hoagii 418 103816 species 1 0 300 Rhodococcus pyridinivorans Rhodococcus jostii 557 1 species 132919 0 Rhodococcus erythropolis 397 species 1833 1 0 Rhodococcus opacus 1099 0 1 species 37919 species 334542 1 0 Rhodococcus qingshengii 228 Rhodococcus ruber 436 species 1830 1 0 1829 species 1 0 239 Rhodococcus rhodochrous 12 192944 no rank 0 3538 334 Rhodococcus sp. H-CA8f 0 1727214 species 1 1 1033922 species 0 450 Rhodococcus sp. WB1 Rhodococcus sp. YL-1 258 1 species 1045808 0 0 1 1807790 species 234 Rhodococcus sp. BH4 1 species 679318 0 Rhodococcus sp. WMMA185 222 Rhodococcus sp. PBTS 2 361 0 species 1653479 1 Rhodococcus sp. PBTS 1 245 species 1653478 1 0 338 Rhodococcus sp. B7740 0 1564114 species 1 0 species 1723645 1 Rhodococcus sp. 008 254 0 1 species 1570939 Rhodococcus sp. 2G 231 species 1805827 1 0 Rhodococcus sp. MTM3W5.2 325 286 Rhodococcus sp. p52 0 935199 species 1 Catenulisporales 1008 3 0 1 order 414714 4 20 1005 Catenulisporaceae 3 414877 family 1 0 0 1 414878 genus 2 985 Catenulispora 25 0 1 304895 species 960 Catenulispora acidiphila 0 1 2037 order 19 9616 Actinomycetales 15 1754 Actinomycetaceae 9601 family 2049 18 0 1 Trueperella 859 1 1 0 2 genus 1069494 Trueperella pyogenes 858 species 1661 1 0 3867 Actinomyces 100 1 0 9 1654 genus no rank 2609248 3 0 1350 429 Actinomyces sp. oral taxon 897 0 2081702 species 1 1 1851395 species 0 459 Actinomyces sp. Chiba101 462 Actinomyces sp. oral taxon 414 0 712122 species 1 Actinomyces radicidentis 484 1 species 111015 0 972 Actinomyces pacaensis 0 1 1852377 species 1 species 1960083 0 Actinomyces gaoshouyii 304 Actinomyces sp. VUL4_3 157 0 species 1912795 1 0 1 species 544580 Actinomyces oris 500 183 1 genus 28263 0 species 28264 1 0 Arcanobacterium haemolyticum 183 1 329 Actinotignum 1653174 genus 2 0 1 328 Actinotignum schaalii 1 59505 species 0 0 1 genus 2529408 743 1 52773 species 0 743 Actinomyces meyeri 2050 genus 2 0 1 64 1866 Mobiluncus Mobiluncus curtisii 1802 species 2051 1 0 13 2207 Frankiales 85013 order 7 0 1 6 74712 family 1 0 39 2194 Frankiaceae Frankia 2155 20 0 1 genus 1854 5 0 2632575 no rank 1 576 Frankia sp. EAN1pec 576 1 species 298653 0 Frankia alni 650 0 species 1859 1 360 Frankia casuarinae 0 106370 species 1 Frankia inefficax 549 0 species 298654 1 680 0 no rank 1752188 4 Actinobacteria bacterium IMCC19121 123 1 species 1848754 0 Actinobacteria bacterium IMCC25003 211 species 1848255 1 0 Actinobacteria bacterium IMCC26077 208 1 species 1848755 0 Actinobacteria bacterium IMCC26103 138 1 species 1848756 0 32 class 84998 1 0 129 Coriobacteriia 35709 Coriobacteriales 10152 142 1 0 14 order 84999 family 1643824 7 0 1 93 Atopobiaceae 5301 1 1380 genus 0 1 Atopobium 1 2767353 genus 0 892 1 1382 species 0 892 Atopobium parvulum 49 Olsenella 4315 4 genus 133925 1 0 0 species 1805478 1 Olsenella sp. Marseille-P2300 1920 0 no rank 2638792 1 1092 1092 Olsenella sp. oral taxon 807 1 712411 species 0 1254 Olsenella uli 0 1 133926 species Coriobacteriaceae 4709 535 1 0 6 family 84107 0 1 33870 genus 2 541 Coriobacterium 2 Coriobacterium glomerans 539 0 1 species 33871 Collinsella 2583 11 1 0 2 genus 102106 0 1 species 74426 Collinsella aerofaciens 2572 0 1 84113 no rank 1050 1531429 species 1 0 1050 Coriobacteriaceae bacterium 68-1-3 0 1 order 1643822 17 Eggerthellales 25428 168 1 0 16 1643826 family 25260 Eggerthellaceae 5280 1 0 2 genus 84108 Slackia 1814 3 0 84110 species 1 1811 Slackia heliotrinireducens 1981050 genus 1 0 2038 0 species 1944646 1 Phoenicibacter massiliensis 2038 0 1 genus 644652 3 Gordonibacter 3864 21 1764 Gordonibacter massiliensis 1 1841863 species 0 species 1335613 1 0 Gordonibacter urolithinfaciens 2079 1 Adlercreutzia 3213 genus 447020 2 0 1 446660 species 1 0 3212 Adlercreutzia equolifaciens 1 0 2 genus 79603 Denitrobacterium 1049 1 0 species 79604 1 Denitrobacterium detoxificans 1048 2 Cryptobacterium 477 2 genus 84162 1 0 475 Cryptobacterium curtum 0 84163 species 1 0 1 genus 84111 3 Eggerthella 7525 85 6295 Eggerthella lenta 0 1 84112 species 1145 0 no rank 2648737 1 species 502558 1 0 Eggerthella sp. YY7918 1145 5 Thermoleophilia 675 class 1497346 5 0 1 25 Solirubrobacterales 670 4 order 588673 1 0 3 family 320583 1 0 1 Conexibacteraceae 645 0 1 191494 genus 2 644 Conexibacter 45 0 1 191495 species 599 Conexibacter woesei 0 1 class 84992 5 Acidimicrobiia 554 10 544 Acidimicrobiales 11 0 1 84993 order 4 84994 family 2 0 1 5 163 Acidimicrobiaceae 158 0 53634 genus 1 0 1 species 53635 Acidimicrobium ferrooxidans 158 370 1 2448023 family 0 genus 682522 1 0 370 Ilumatobacter coccineus 370 1 species 467094 0 1 0 6 class 84995 Rubrobacteria 824 4 28 Rubrobacterales 820 5 order 84996 1 0 12 792 Rubrobacteraceae 4 84997 family 1 0 10 Rubrobacter 780 3 genus 42255 1 0 0 49319 species 1 569 Rubrobacter xylanophilus 201 Rubrobacter radiotolerans 0 1 42256 species Proteobacteria 891518 272 1 0 1969 phylum 1224 1218 0 class 1807140 6 Acidithiobacillales 1218 35 1 0 6 order 225057 5 1183 Acidithiobacillaceae 5 225058 family 1 0 8 1178 Acidithiobacillus 119977 genus 4 0 1 Acidithiobacillus ferrivorans 397 0 species 160808 1 920 species 1 0 401 Acidithiobacillus ferrooxidans 372 Acidithiobacillus caldus 33059 species 1 0 5 580370 class 1 0 2 771 Zetaproteobacteria Mariprofundales 769 4 0 1 order 580371 4 0 1 580372 family 3 765 Mariprofundaceae 2 0 2 genus 377315 763 Mariprofundus aestuarium 451 0 species 1921086 1 1 species 1921087 0 Mariprofundus ferrinatatus 312 0 1 1236 class 872 426957 Gammaproteobacteria 818 1 0 51 135613 order 11562 Chromatiales 205 0 2 451214 no rank 643 1 0 2 genus 1273155 Thiohalobacter 643 5 638 Thiohalobacter thiocyanaticus 1 585455 species 0 4 704 Halothiobacillaceae 255526 family 4 0 1 genus 109262 3 0 1 6 Halothiobacillus 700 0 1 no rank 2636392 409 Halothiobacillus sp. LS2 409 1 species 1860122 0 Halothiobacillus neapolitanus 285 0 species 927 1 3 449719 family 1 0 3 507 Granulosicoccaceae genus 437504 2 0 1 1 Granulosicoccus 504 503 Granulosicoccus antarcticus 0 1 437505 species 1 0 17 1046 family 4566 Chromatiaceae 48 153 1980513 genus 1 0 153 Candidatus Nitrosoglobus terrae 1 1630141 species 0 Allochromatium 749 5 1 0 2 genus 85072 species 1049 1 0 Allochromatium vinosum 744 2 genus 156885 1 0 3 Thioflavicoccus 397 394 Thioflavicoccus mobilis 0 1 80679 species Thiocystis 608 2 0 1 genus 13724 2 species 73141 1 0 Thiocystis violascens 606 4 genus 1227 1 0 1 Nitrosococcus 487 0 species 133539 1 Nitrosococcus halophilus 189 Nitrosococcus watsonii 147 0 species 473531 1 Nitrosococcus oceani 150 0 species 1229 1 Thiodictyon 938 11 0 1 genus 53392 2 927 Candidatus Thiodictyon syntrophicum 0 1166950 species 1 0 1 85076 genus 2 572 Marichromatium 7 species 37487 1 0 Marichromatium purpuratum 565 614 82569 no rank 1 0 1978339 species 1 0 614 Chromatiaceae bacterium 2141T.STBD.0c.01a 18 72276 family 1 0 69 4270 Ectothiorhodospiraceae 0 1 genus 106633 6 Thioalkalivibrio 1954 29 1033854 species 1 0 637 Thioalkalivibrio sulfidiphilus 0 1 species 106634 Thioalkalivibrio versutus 371 322 Thioalkalivibrio paradoxus 0 1 108010 species no rank 2621013 1 0 277 Thioalkalivibrio sp. K90mix 277 species 396595 1 0 Thioalkalivibrio nitratireducens 318 0 species 186931 1 Ectothiorhodospira 493 6 0 1 genus 1051 2 487 0 1 no rank 2684909 1 species 1442136 0 Ectothiorhodospira sp. BSL-9 487 4 444 Halorhodospira 85108 genus 2 0 1 440 Halorhodospira halophila 1 1053 species 0 1 0 2 genus 133193 Alkalilimnicola 541 4 537 Alkalilimnicola ehrlichii 0 351052 species 1 9 Spiribacter 404 3 genus 1335745 1 0 0 1335746 species 1 111 Spiribacter salinus 1 species 1335757 0 Spiribacter curvatus 284 5 Acidihalobacter 365 2 genus 1765964 1 0 Acidihalobacter prosperus 360 1 species 160660 0 family 1738654 3 0 1 1 Woeseiaceae 212 2 genus 1738655 1 0 2 Woeseia 211 1548547 species 1 0 209 Woeseia oceani 1676141 family 3 0 1 8 455 Wenzhouxiangellaceae 12 Wenzhouxiangella 447 2 genus 1676142 1 0 species 1579979 1 0 Wenzhouxiangella marina 435 1692040 order 6 0 1 14 937 Acidiferrobacterales 923 Acidiferrobacteraceae 30 1 0 5 1692041 family 1692042 genus 2 0 1 13 380 Sulfurifustis Sulfurifustis variabilis 367 0 1 species 1675686 1 0 2 genus 1744881 Sulfuricaulis 513 6 0 1 species 1620215 Sulfuricaulis limicola 507 order 1240482 4 0 574 Orbaceae 574 2 1 0 4 family 1240483 0 1 1193503 genus 2 317 Gilliamella 2 1 1196095 species 0 315 Gilliamella apicola 255 genus 1335631 1 0 0 species 1267021 1 Frischella perrara 255 1 0 13 order 135618 Methylococcales 4005 15 Methylococcaceae 3990 55 1 0 12 family 403 5 genus 416 1 0 25 Methylomonas 2402 1 421 species 0 665 Methylomonas methanica 0 species 1538553 1 Methylomonas denitrificans 595 Methylomonas koyamae 517 species 702114 1 0 0 2608980 no rank 1 600 Methylomonas sp. DH-1 600 1 species 1727196 0 Methylococcus 335 7 0 1 genus 413 2 1 414 species 0 328 Methylococcus capsulatus 1 Methylovulum 553 genus 762296 2 0 1 Methylovulum psychrotolerans 552 1 species 1704499 0 1 Methylomicrobium 645 genus 39773 2 0 1 0 271065 species 1 644 Methylomicrobium alcaliphilum 32 135625 order 1 0 3 9849 Pasteurellales 9846 Pasteurellaceae 163 0 1 712 family 31 genus 155493 2 0 1 1 Gallibacterium 440 1 750 species 0 439 Gallibacterium anatis 11 Haemophilus 2139 genus 724 6 0 1 727 species 1 0 898 Haemophilus influenzae 527 Haemophilus parainfluenzae 0 1 729 species 198 1 no rank 2609962 0 198 Haemophilus sp. oral taxon 036 0 1 712310 species 0 1 species 730 [Haemophilus] ducreyi 211 294 Haemophilus pittmaniae 0 1 249188 species 982 Mannheimia 3 1 0 4 75984 genus 0 1 species 85404 Mannheimia varigena 371 0 no rank 2645054 1 177 177 Mannheimia sp. USDA-ARS-USMARC-1261 0 1 1432056 species Mannheimia haemolytica 431 0 1 species 75985 0 1 genus 416916 3 Aggregatibacter 828 10 1 714 species 0 363 Aggregatibacter actinomycetemcomitans 455 Aggregatibacter aphrophilus 1 732 species 0 1674 Actinobacillus 5 1 0 5 713 genus 0 1 species 718 Actinobacillus equuli 276 species 67854 1 0 Actinobacillus succinogenes 418 0 species 716 1 Actinobacillus suis 370 605 Actinobacillus pleuropneumoniae 0 1 715 species 0 1 476528 genus 2 878 Bibersteinia 1 1 species 47735 0 Bibersteinia trehalosi 877 genus 745 3 0 1 2 Pasteurella 1321 Pasteurella dagmatis 302 0 1 species 754 Pasteurella multocida 1017 1 species 747 0 Histophilus 484 1 0 1 genus 214906 2 0 731 species 1 483 Histophilus somni Glaesserella 496 3 0 1 genus 2094023 2 Glaesserella parasuis 493 1 species 738 0 441 0 genus 697331 1 [Mannheimia] succiniciproducens 441 0 species 157673 1 243 91347 order 1 0 510 189817 Enterobacterales 441 2 1903416 family 0 10 Pragia 441 genus 82984 2 0 1 Pragia fontium 431 0 1 species 82985 71 23132 Yersiniaceae 1903411 family 39 0 1 167 6396 Yersinia 629 genus 13 0 1 1 species 29483 0 Yersinia aldovae 470 0 1649845 species group 3 1395 Yersinia similis 379 species 367190 1 0 637 Yersinia pseudotuberculosis 1 633 species 0 0 632 species 1 379 Yersinia pestis 267 Yersinia intermedia 631 species 1 0 365 Yersinia kristensenii 28152 species 1 0 0 species 630 1 Yersinia enterocolitica 1379 255 0 no rank 2653513 1 0 1 1839800 species 255 Yersinia sp. FDAARGOS_228 Yersinia rohdei 326 0 species 29485 1 0 1 29484 species 919 Yersinia frederiksenii 29486 species 1 0 438 Yersinia ruckeri Yersinia aleksiciae 415 0 1 species 263819 14 Chania 513 2 genus 1745211 1 0 1 1639108 species 0 499 Chania multitudinisentens 13985 Serratia 618 1 0 16 613 genus Serratia rubidaea 829 0 species 61652 1 1678 Serratia plymuthica 0 1 82996 species Serratia ficaria 592 0 species 61651 1 Serratia liquefaciens 740 0 species 614 1 species 47917 1 0 Serratia fonticola 1149 28151 species 1 0 663 Serratia proteamaculans Serratia marcescens 3032 1 species 615 0 4684 0 8 2647522 no rank 1 species 1327989 0 Serratia sp. FS14 627 524 Serratia sp. SCBI 488142 species 1 0 0 species 768490 1 Serratia sp. AS12 526 526 Serratia sp. AS13 0 768493 species 1 0 104623 species 1 666 Serratia sp. ATCC 39006 0 species 1758196 1 Serratia sp. SSNIH1 489 Serratia sp. MYb239 512 species 2033438 1 0 0 1 671990 species 814 Serratia sp. FGI94 1 0 2 929812 genus 629 Gibbsiella 4 Gibbsiella quercinecans 625 0 1 species 929813 Rahnella 1531 31 0 1 genus 34037 4 486 Rahnella aquatilis 0 34038 species 1 1014 0 no rank 2635087 2 467 Rahnella sp. Y9602 741091 species 1 0 0 1805933 species 1 547 Rouxiella sp. ERMR1:05 Rouxiella 7 0 1 genus 1565532 1903414 family 22 0 1 64 7290 Morganellaceae 1029 Providencia 14 0 1 586 genus 4 349 Providencia alcalifaciens 0 1 126385 species 230 Providencia rettgeri 0 587 species 1 Providencia stuartii 436 1 species 588 0 17 Proteus 1339 genus 583 3 0 1 442 Proteus vulgaris 1 585 species 0 0 584 species 1 880 Proteus mirabilis 2 637 genus 1 0 1 98 Arsenophonus Arsenophonus symbiont of Lipoptena fortisetosa 97 0 1 species 634113 0 1 626 genus 6 2074 Xenorhabdus 34 Xenorhabdus poinarii 231 0 species 40577 1 species 351679 1 0 Xenorhabdus hominickii 347 504 Xenorhabdus nematophila 1 628 species 0 582 Xenorhabdus bovienii 40576 species 1 0 species 351671 1 0 Xenorhabdus doucetiae 376 0 1 581 genus 2 1266 Morganella 43 0 species 582 1 Morganella morganii 1223 6 1420 Photorhabdus 29487 genus 4 0 1 1 species 574560 0 Photorhabdus temperata 364 Photorhabdus asymbiotica 542 species 291112 1 0 0 1 29488 species 508 Photorhabdus luminescens 14 1903412 family 1 0 17 5970 Hafniaceae genus 82982 2 0 1 30 Obesumbacterium 464 Obesumbacterium proteus 434 species 82983 1 0 1521 Hafnia 31 0 1 568 genus 3 0 1 species 569 Hafnia alvei 1104 386 0 1 no rank 2621980 1 species 1848580 0 Hafnia sp. CBA7124 386 Edwardsiella 3968 205 1 0 8 genus 635 0 1 67780 species 454 Edwardsiella ictaluri Edwardsiella anguillarum 447 species 1821960 1 0 0 93378 species 1 337 Edwardsiella hoshinae 1054 0 no rank 2676541 2 0 species 1650654 1 Edwardsiella sp. LADL05-105 442 612 Edwardsiella sp. EA181011 1578828 species 1 0 Edwardsiella tarda 964 0 species 636 1 Edwardsiella piscicida 507 1 species 1263550 0 family 1903410 20 0 1 40 Pectobacteriaceae 11024 5 84565 genus 1 0 33 1388 Sodalis 0 species 1929246 1 Sodalis endosymbiont of Henestaris halophilus 52 Sodalis glossinidius 342 species 63612 1 0 570 Sodalis praecaptivus 0 1239307 species 1 0 1486991 species 1 391 Candidatus Sodalis pierantonius Dickeya 4340 120 1 0 6 genus 204037 1 species 204039 0 Dickeya dianthicola 615 1019 Dickeya zeae 0 204042 species 1 678 Dickeya dadantii 204038 species 1 0 1778540 species 1 0 556 Dickeya fangzhongdai Dickeya solani 1352 1 species 1089444 0 4539 Pectobacterium 115 0 1 122277 genus 6 Pectobacterium wasabiae 467 0 1 species 55208 Pectobacterium atrosepticum 439 species 29471 1 0 1 species 2042057 0 Pectobacterium polaris 803 1905730 species 1 0 513 Pectobacterium parmentieri 0 species 554 1 Pectobacterium carotovorum 2202 6 Brenneria 717 2 genus 71655 1 0 Brenneria goodwinii 711 species 1109412 1 0 2 no rank 451511 0 915 27 Plesiomonas 915 2 genus 702 1 0 Plesiomonas shigelloides 888 1 species 703 0 1 0 27 family 1903409 Erwiniaceae 12512 32 1 0 8 genus 551 Erwinia 3075 129 no rank 2622719 1 0 408 species 215689 1 0 Erwinia sp. Ejp617 408 1 species 1619313 0 Erwinia gerundensis 540 1 1922217 species 0 145 Candidatus Erwinia sp. ErCipseudotaxifoliae Erwinia amylovora 330 0 1 species 552 182337 species 1 0 731 Erwinia billingiae 0 species 338565 1 Erwinia tasmaniensis 472 0 1 79967 species 320 Erwinia pyrifoliae 2 genus 32199 1 0 5 Buchnera 1001 1 species 9 0 Buchnera aphidicola 996 genus 2100764 2 0 1196 562 Pantoea gaviniae 0 1 665914 species 0 1 species 665913 Pantoea calida 634 0 1 82986 genus 2 647 Tatumella 7 Tatumella citrea 640 species 53336 1 0 53335 genus 11 0 1 187 6362 Pantoea 705 Pantoea ananatis 1 553 species 0 0 species group 1654067 1 1084 Pantoea agglomerans 1084 0 species 549 1 Pantoea stewartii 510 0 1 species 66269 species 1076550 1 0 Pantoea rwandensis 387 2630326 no rank 3 0 1884 1 species 592316 0 Pantoea sp. At-9b 697 1 species 1484158 0 Pantoea sp. PSNIH1 589 0 1 1484157 species 598 Pantoea sp. PSNIH2 1 470934 species 0 937 Pantoea vagans 0 1891675 species 1 474 Pantoea alhagi 194 Candidatus Pantoea carbekii 0 1 1235990 species 0 1 genus 51228 199 199 Wigglesworthia glossinidia 51229 species 1 0 116 family 543 1 0 815 Enterobacteriaceae 128023 1 0 3 genus 160674 Raoultella 2540 51 0 1 54291 species 1748 Raoultella ornithinolytica 0 1 species 575 Raoultella planticola 741 54 6515 Salmonella 590 genus 3 0 1 species 28901 1 0 Salmonella enterica 5687 1 54736 species 0 774 Salmonella bongori 0 1 579 genus 473 0 species 61648 1 Kluyvera intermedia 473 0 1 genus 620 4 Shigella 10489 267 0 1 622 species 3132 Shigella dysenteriae 0 1 2629414 no rank 4682 1 1813821 species 0 4682 Shigella sp. PAMC 28760 Shigella flexneri 2408 0 species 623 1 88 Leclercia 1735 genus 83654 4 0 1 1121 no rank 2627398 2 0 Leclercia sp. LSNIH3 552 0 1 species 1920116 0 1 1920114 species 569 Leclercia sp. LSNIH1 526 Leclercia adecarboxylata 1 83655 species 0 Escherichia 38546 213 1 0 5 genus 561 Escherichia albertii 2075 1 species 208962 0 0 1 species 564 Escherichia fergusonii 1743 Escherichia marmotae 718 species 1499973 1 0 1 562 species 0 33797 Escherichia coli 0 1 genus 1330545 4 Lelliottia 1912 13 926 Lelliottia amnigena 0 1 61646 species 0 species 1907578 1 Lelliottia jeotgali 416 species 69220 1 0 Lelliottia nimipressuralis 557 1315 18 no rank 191675 0 1315 0 84563 clade 18 397 0 clade 146507 4 secondary endosymbiont of Heteropsylla cubana 100 1 species 134287 0 182 secondary endosymbiont of Ctenarytaina eucalypti 0 1199245 species 1 1 0 2 568987 genus 115 Candidatus Hamiltonella 5 Candidatus Hamiltonella defensa 110 1 species 138072 0 1 1906661 genus 0 128 0 1070130 species 1 128 Candidatus Gullanella endobia 64 0 1 1682492 genus 64 Candidatus Tachikawaea gelatinosa 1 1410383 species 0 0 1 199891 clade 102 102 secondary endosymbiont of Trabutina mannipara 1835721 species 1 0 1906660 genus 1 0 85 1 1778264 species 0 85 Candidatus Mikella endobia 1 0 2 1906659 genus 80 Candidatus Hoaglandella 1 79 Candidatus Hoaglandella endobia 1 1778263 species 0 415 clade 84564 7 0 5 Candidatus Blochmannia 415 7 genus 203804 1 0 0 711328 no rank 2 110 0 species 1505596 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 41 0 1 species 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 69 species 251542 1 0 Candidatus Blochmannia chromaiodes 42 0 species 101534 1 Candidatus Blochmannia pennsylvanicus 74 1 203907 species 0 91 Candidatus Blochmannia floridanus Candidatus Blochmannia vafer 93 species 251535 1 0 0 1 genus 1906657 44 0 1778262 species 1 44 Candidatus Doolittlea endobia 5 genus 1330547 1 0 29 Kosakonia 2750 Kosakonia sacchari 539 species 1158459 1 0 Kosakonia cowanii 794 species 208223 1 0 Kosakonia radicincitans 903 species 283686 1 0 0 species 497725 1 Kosakonia oryzae 485 82 0 genus 401618 1 0 1 401619 species 82 Candidatus Riesia pediculicola 0 genus 1048757 1 81 Candidatus Moranella endobia 81 0 1 species 1048758 1 0 10 570 genus 19158 Klebsiella 567 Klebsiella aerogenes 1710 0 species 548 1 1 species 571 0 Klebsiella oxytoca 3102 1 573 species 0 6762 Klebsiella pneumoniae Klebsiella quasivariicola 972 0 1 species 2026240 0 1 244366 species 1946 Klebsiella variicola 0 2 no rank 2608929 1639 Klebsiella sp. M5al 927 species 1934254 1 0 Klebsiella sp. LTGPAF-6F 712 1 species 1905288 0 species 1134687 1 0 Klebsiella michiganensis 1550 910 Klebsiella quasipneumoniae 1463165 species 1 0 0 1 1330546 genus 3 2265 Pluralibacter 4 1 species 61647 0 Pluralibacter gergoviae 1363 898 [Enterobacter] lignolyticus 0 1 1334193 species 1 0 8 genus 413496 Cronobacter 4220 87 Cronobacter turicensis 469 species 413502 1 0 1 species 413497 0 Cronobacter dublinensis 695 0 1163710 species 1 441 Cronobacter condimenti 0 1 species 28141 Cronobacter sakazakii 882 640 Cronobacter muytjensii 1 413501 species 0 Cronobacter malonaticus 419 0 species 413503 1 1 species 535744 0 Cronobacter universalis 587 22 genus 547 1 0 914 Enterobacter 19229 5001 2608935 no rank 9 0 species 1166130 1 0 Enterobacter sp. R4-368 516 1206 Enterobacter sp. ODB01 1 1827481 species 0 species 1977566 1 0 Enterobacter sp. Crenshaw 280 Enterobacter sp. 638 330 1 species 399742 0 521 Enterobacter sp. FY-07 1 1692238 species 0 0 species 1560339 1 Enterobacter sp. E20 315 0 1 2051905 species 756 Enterobacter sp. CRENT-193 0 1 species 1914861 Enterobacter sp. SA187 818 Enterobacter sp. HK169 259 0 species 1868135 1 species group 354276 12 0 13314 424 Enterobacter cancerogenus 69218 species 1 0 2824 Enterobacter hormaechei 1721 1 0 3 158836 species 583 Enterobacter xiangfangensis 0 1 1296536 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 520 1 subspecies 1812934 0 0 1 550 species 5328 Enterobacter cloacae 1 species 1812935 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 889 366 Enterobacter ludwigii 1 299767 species 0 0 2757714 no rank 3 1125 2077137 species 1 0 370 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 1 species 2027919 Enterobacter cloacae complex bacterium 343 412 Enterobacter cloacae complex sp. ECNIH7 1915310 species 1 0 1347 Enterobacter asburiae 61645 species 1 0 208224 species 1 0 1011 Enterobacter kobei 2809 no rank 36866 5 0 species 891974 1 0 Plautia stali symbiont 445 0 1 2066051 species 674 Enterobacteriaceae bacterium ENNIH1 Enterobacteriaceae bacterium ENNIH2 596 0 1 species 1920109 0 1920128 species 1 618 Enterobacteriaceae bacterium ENNIH3 Enterobacteriaceae bacterium strain FGI 57 476 0 species 693444 1 1 0 2 158483 genus 1688 Cedecea 5 1683 Cedecea neteri 0 1 158822 species 230 10642 Citrobacter 544 genus 14 0 1 0 1 35703 species 1467 Citrobacter amalonaticus 0 1 species 67825 Citrobacter rodentium 650 1 species 67824 0 Citrobacter farmeri 612 Citrobacter koseri 583 0 1 species 545 911 0 no rank 2644389 2 1920110 species 1 0 473 Citrobacter sp. CFNIH10 Citrobacter sp. FDAARGOS_156 438 1 species 1702170 0 6189 species group 1344959 7 0 Citrobacter freundii complex sp. CFNIH3 521 species 2077147 1 0 2077149 species 1 0 377 Citrobacter freundii complex sp. CFNIH9 0 species 546 1 Citrobacter freundii 2394 0 1 species 2077148 Citrobacter freundii complex sp. CFNIH4 338 Citrobacter braakii 1087 species 57706 1 0 1 species 67827 0 Citrobacter werkmanii 937 535 Citrobacter freundii complex sp. CFNIH2 1 2066049 species 0 622 1335483 genus 1 0 622 Shimwellia blattae 0 1 563 species 409304 genus 1 0 137 species 168169 1 0 Candidatus Ishikawaella capsulata 137 6283 Cellvibrionales 14 0 1 1706369 order 28 0 1 1706371 family 12 3036 Cellvibrionaceae 13 genus 2425 2 0 1 1 Teredinibacter 323 0 1 2426 species 322 Teredinibacter turnerae genus 447467 2 0 1 32 Simiduia 456 447471 species 1 0 424 Simiduia agarivorans 330 Agarilytica 3 0 1 2036021 genus 2 0 species 1737490 1 Agarilytica rhodophyticola 327 0 1 10 genus 4 1538 Cellvibrio 10 0 species 155077 1 Cellvibrio japonicus 552 0 2 2624793 no rank 976 Cellvibrio sp. PSBB006 530 0 1 species 1987723 0 1945512 species 1 446 Cellvibrio sp. PSBB023 genus 316625 1 0 376 1 species 86304 0 Saccharophagus degradans 376 7 Microbulbiferaceae 1389 family 1706373 5 0 1 4 48073 genus 1 0 8 1382 Microbulbifer 0 1 1769779 species 455 Microbulbifer aggregans Microbulbifer agarilyticus 425 0 species 260552 1 0 species 252514 1 Microbulbifer thermotolerans 494 4 1706372 family 1 0 6 890 Halieaceae 27 Halioglobus 884 genus 1217416 3 0 1 1 species 930806 0 Halioglobus pacificus 438 Halioglobus japonicus 419 species 930805 1 0 1706375 family 6 0 1 2 954 Spongiibacteraceae 2 genus 1434050 1 0 1 Zhongshania 308 0 species 1470434 1 Zhongshania aliphaticivorans 307 0 1 1084558 genus 479 species 716816 1 0 Oceanicoccus sagamiensis 479 3 Spongiibacter 165 2 genus 630749 1 0 0 1 no rank 2631504 162 Spongiibacter sp. IMCC21906 162 1 species 1620392 0 18902 Vibrionales 7 1 0 43 135623 order 91 Vibrionaceae 18895 family 641 42 0 1 1 2042066 genus 0 356 Paraphotobacterium marinum 356 species 1755811 1 0 1559 Photobacterium 1 1 0 4 657 genus 0 1 1295392 species 535 Photobacterium gaetbulicola 0 1 species 74109 Photobacterium profundum 358 Photobacterium damselae 665 1 species 38293 0 15510 Vibrio 176 1 0 30 662 genus 1 species 1435069 0 Vibrio tritonius 328 508 Vibrio nigripulchritudo 1 28173 species 0 0 no rank 2614977 2 639 1116375 species 1 0 343 Vibrio sp. EJY3 296 Vibrio sp. 2521-89 0 2014742 species 1 Vibrio vulnificus 1332 0 1 species 672 0 1 species 2025808 Vibrio qinghaiensis 241 Vibrio hyugaensis 233 1 species 1534743 0 879 Vibrio coralliilyticus 0 190893 species 1 881 Vibrio mimicus 0 674 species 1 5906 10 717610 species group 0 Vibrio owensii 390 species 696485 1 0 Vibrio alginolyticus 1013 species 663 1 0 0 species 766224 1 Vibrio jasicida 314 0 669 species 1 548 Vibrio harveyi 1 species 680 0 Vibrio campbellii 982 843 species subgroup 2315253 2 0 1 species 50719 0 Vibrio diabolicus 527 316 Vibrio antiquarius 1 150340 species 0 0 190895 species 1 325 Vibrio rotiferianus Vibrio natriegens 582 0 1 species 691 670 species 1 0 909 Vibrio parahaemolyticus 1891919 species group 1 0 286 286 Vibrio tubiashii 1 29498 species 0 371 Vibrio tapetis 0 1 52443 species 1 29494 species 0 599 Vibrio furnissii Vibrio fluvialis 672 0 1 species 676 681 Vibrio cholerae 0 1 666 species Vibrio tasmaniensis 204 0 1 species 212663 308 Vibrio breoganii 0 1 553239 species Vibrio scophthalmi 462 species 45658 1 0 0 species 687 1 Vibrio gazogenes 307 1 species 55601 0 Vibrio anguillarum 497 Aliivibrio 938 14 0 1 genus 511678 4 0 1 species 668 Aliivibrio fischeri 294 Aliivibrio wodanis 403 species 80852 1 0 Aliivibrio salmonicida 227 1 species 40269 0 2 Grimontia 441 genus 246861 2 0 1 0 1 673 species 439 Grimontia hollisae 135619 order 65 0 1 125 17444 Oceanospirillales 1920240 family 6 0 1 6 724 Kangiellaceae 1 0 5 261963 genus 718 Kangiella 15 Kangiella sediminilitoris 206 0 1 species 1144748 248 Kangiella profundi 1 1561924 species 0 94 Kangiella geojedonensis 1 914150 species 0 155 Kangiella koreensis 0 261964 species 1 family 255527 3 0 827 8 612 Gynuella 1445504 genus 2 0 1 1445505 species 1 0 604 Gynuella sunshinyii genus 230494 1 0 215 Reinekea forsetii 215 1 species 1336806 0 537 Hahellaceae 2 1 0 3 224379 family 1 0 2 158481 genus 535 Hahella 10 Hahella chejuensis 525 species 158327 1 0 family 224372 9 0 1 16 Alcanivoracaceae 2461 Ketobacter 357 6 1 0 2 genus 2025617 1917421 species 1 0 351 Ketobacter alkanivorans 0 1 genus 59753 6 Alcanivorax 2088 22 0 1 species 1306787 Alcanivorax pacificus 531 563 Alcanivorax xenomutans 1 1094342 species 0 Alcanivorax borkumensis 231 1 species 59754 0 522 Alcanivorax dieselolei 1 285091 species 0 2638842 no rank 1 0 219 0 species 1113728 1 Alcanivorax sp. NBRC 101098 219 3 family 191033 1 0 12 Oleiphilaceae 428 genus 141450 2 0 1 6 Oleiphilus 416 410 Oleiphilus messinensis 141451 species 1 0 135620 family 10 0 1 48 2593 Oceanospirillaceae 313 genus 187492 1 0 0 1 species 187493 Thalassolituus oleivorans 313 313 0 1 188907 genus Oleispira antarctica 313 0 1 species 188908 629 Marinobacterium 11 1 0 2 48075 genus 618 Marinobacterium aestuarii 0 1 1821621 species 1 1537406 genus 0 364 1 1249553 species 0 364 Bacterioplanes sanyensis 926 Marinomonas 5 0 1 28253 genus 4 Marinomonas mediterranea 245 1 species 119864 0 0 1 species 936476 Marinomonas posidonica 278 0 196814 no rank 1 398 Marinomonas sp. MWYL1 398 0 1 species 400668 173 9749 Halomonadaceae 28256 family 30 0 1 Kushneria 979 13 0 1 genus 504090 3 1 698828 species 0 529 Kushneria konosiri 157779 species 1 0 437 Kushneria marisflavi 1 0 2 42054 genus 544 Chromohalobacter 4 540 Chromohalobacter salexigens 158080 species 1 0 1 0 15 genus 2745 Halomonas 6410 73 1 213554 species 0 267 Halomonas campaniensis 0 8 no rank 2609666 3328 1 species 1610576 0 Halomonas sp. R57-5 409 509 Halomonas sp. SF2003 1 2136172 species 0 326 Halomonas sp. GT 1971364 species 1 0 1 1949203 species 0 437 Halomonas sp. 'Soap Lake #6' 244 Halomonas sp. GFAJ-1 1 1118153 species 0 0 1 species 1883416 Halomonas sp. 1513 567 437 Halomonas sp. 'Soap Lake #7' 0 1 1962264 species Halomonas sp. KO116 399 1 species 1504981 0 0 species 1897729 1 Halomonas aestuarii 658 475662 species 1 0 577 Halomonas beimenensis Halomonas huangheensis 424 0 1 species 1178482 0 115561 species 1 543 Halomonas hydrothermalis 507626 species 1 0 540 Halomonas chromatireducens 404432 genus 2 0 1 5 473 Salinicola 468 Salinicola tamaricis 1 1771309 species 0 3 no rank 114403 0 87 45 1 genus 1495768 0 0 species 1495769 1 Candidatus Evansia muelleri 45 3 0 114185 genus 1 3 Candidatus Carsonella ruddii 0 1 114186 species 39 0 1 genus 235572 Candidatus Portiera aleyrodidarum 39 0 1 species 91844 Halotalea 507 7 1 0 2 genus 376488 500 Halotalea alkalilenta 0 376489 species 1 2 204286 genus 1 0 5 576 Cobetia Cobetia marina 571 0 species 28258 1 2270 no rank 118884 12 0 178 198346 clade 1 0 Candidatus Baumannia cicadellinicola 178 0 1 species 186490 1 244 Candidatus Thioglobus 655184 genus 3 0 1 116 Candidatus Thioglobus autotrophicus 1 1705394 species 0 127 Candidatus Thioglobus singularis 0 1427364 species 1 2 1608298 genus 1 0 13 410 Thiolapillus 0 1 species 1076588 Thiolapillus brandeum 397 605 1 genus 349742 0 0 1543721 species 1 605 Sedimenticola thiotaurini 4 32036 clade 0 354 Bathymodiolus septemdierum thioautotrophic gill symbiont 149 species 113267 1 0 0 species 410330 1 Calyptogena okutanii thioautotrophic gill symbiont 91 1 0 2 1541743 genus 114 Candidatus Ruthia 1 0 species 386487 1 Candidatus Ruthia magnifica 113 479 1 genus 1524249 0 479 Pseudohongiella spirulinae 0 1 1249552 species 108 16469 Aeromonadales 29 135624 order 1 0 Aeromonadaceae 16361 144 0 1 family 84642 28 5 405 Oceanisphaera 225143 genus 3 0 1 0 1 species 1903694 Oceanisphaera sp. AMac2203 152 Oceanisphaera profunda 248 species 1416627 1 0 genus 347533 2 0 1 6 Zobellella 968 0 1 species 347534 Zobellella denitrificans 962 Aeromonas 13554 846 0 1 genus 642 18 196024 species 1 0 485 Aeromonas dhakensis 0 species 948519 1 Aeromonas rivipollensis 582 648 species 1 0 456 Aeromonas caviae 0 558964 species 1 658 Aeromonas aquatica 1 652 species 0 595 Aeromonas schubertii 0 1 654 species 1422 Aeromonas veronii 486 Aeromonas media 1 651 species 0 0 1 species 644 Aeromonas hydrophila 2984 4266 8 no rank 257493 0 Aeromonas sp. ASNIH1 318 1 species 1636606 0 403 Aeromonas sp. ASNIH2 0 1 1636607 species 504 Aeromonas sp. CU5 0 1 2033033 species 0 1758179 species 1 607 Aeromonas sp. ASNIH5 1 2033032 species 0 531 Aeromonas sp. CA23 712 Aeromonas sp. ASNIH4 0 1 1636609 species Aeromonas sp. ASNIH7 742 0 species 1920107 1 0 1 species 1636608 Aeromonas sp. ASNIH3 449 0 1 645 species 774 Aeromonas salmonicida 2 Oceanimonas 750 2 genus 129577 1 0 0 1 2636315 no rank 748 511062 species 1 0 748 Oceanimonas sp. GK1 0 1 genus 43947 2 Tolumonas 540 4 1 species 43948 0 Tolumonas auensis 536 0 1 order 72274 128 Pseudomonadales 82369 342 1 0 85 135621 family 69173 Pseudomonadaceae 571 1734 subfamily 351 3 0 genus 352 3 0 1 14 Azotobacter 1734 0 1 species 353 Azotobacter chroococcum 1112 1 354 species 0 608 Azotobacter vinelandii 0 1 1849530 genus 287 Oblitimonas alkaliphila 287 1 species 1697053 0 286 genus 80 0 1 2295 66581 Pseudomonas 0 237609 species 1 393 Pseudomonas alkylphenolica 506 Pseudomonas entomophila 1 312306 species 0 species group 136843 9 0 8921 species 200450 1 0 Pseudomonas trivialis 480 757 Pseudomonas azotoformans 47878 species 1 0 47879 species 1 0 393 Pseudomonas corrugata Pseudomonas protegens 720 0 species 380021 1 451 Pseudomonas veronii 76761 species 1 0 294 species 1 0 4926 Pseudomonas fluorescens 404 Pseudomonas mandelii 0 75612 species 1 Pseudomonas poae 377 0 1 species 200451 Pseudomonas orientalis 413 0 1 species 76758 1 species 157783 0 Pseudomonas cremoricolorata 343 0 1 101564 species 583 Pseudomonas alcaliphila 389 Pseudomonas lurida 0 1 244566 species species 219572 1 0 Pseudomonas antarctica 378 0 1583341 species 1 478 Pseudomonas cerasi 1 species 1788301 0 Pseudomonas versuta 397 6756 0 species group 136849 8 0 251698 species subgroup 2 1360 47877 species 1 0 630 Pseudomonas amygdali Pseudomonas savastanoi 730 1 species 29438 0 1 species 36746 0 Pseudomonas cichorii 349 281 0 1 no rank 2775504 Pseudomonas sp. Lz4W 281 1 species 1206777 0 0 251701 species 1 795 Pseudomonas syringae group genomosp. 3 366 Pseudomonas avellanae 46257 species 1 0 1 251695 species subgroup 0 3045 3045 Pseudomonas syringae 0 1 317 species Pseudomonas viridiflava 560 0 species 33069 1 9952 136845 species group 6 0 0 species 47880 1 Pseudomonas fulva 792 Pseudomonas monteilii 1308 0 species 76759 1 Pseudomonas mosselii 1062 1 species 78327 0 Pseudomonas oryzihabitans 713 species 47885 1 0 0 species 70775 1 Pseudomonas plecoglossicida 480 0 303 species 1 5597 Pseudomonas putida 14154 0 30 196821 no rank Pseudomonas sp. LPH1 491 0 species 1898684 1 0 2083055 species 1 435 Pseudomonas sp. LH1G9 460 Pseudomonas sp. St29 1500687 species 1 0 Pseudomonas sp. StFLB209 616 0 1 species 1028989 1 1659194 species 0 298 Pseudomonas sp. GR 6-02 0 1 1930532 species 384 Pseudomonas sp. CC6-YY-74 Pseudomonas sp. PONIH3 483 0 1 species 1636610 1 1827300 species 0 338 Pseudomonas sp. MYb193 0 species 2018067 1 Pseudomonas sp. FDAARGOS_380 324 Pseudomonas sp. VLB120 499 1 species 69328 0 0 1611770 species 1 617 Pseudomonas sp. MRSN12121 509 Pseudomonas sp. TKP 0 1415630 species 1 1 species 1207075 0 Pseudomonas sp. UW4 354 Pseudomonas sp. HLS-6 416 1 species 2049589 0 Pseudomonas sp. XWY-1 540 species 2069256 1 0 0 1856685 species 1 649 Pseudomonas sp. TCU-HL1 1294143 species 1 0 728 Pseudomonas sp. ATCC 13867 Pseudomonas sp. SWI44 364 0 1 species 2083053 Pseudomonas sp. JY-Q 478 species 1338689 1 0 0 1 species 2083051 Pseudomonas sp. SWI6 345 Pseudomonas sp. Os17 477 0 1 species 1500686 292 Pseudomonas sp. LG1D9 0 2083054 species 1 438 Pseudomonas sp. DR 5-09 0 1 1534110 species species 1259844 1 0 Pseudomonas sp. FGI182 563 Pseudomonas sp. NC02 469 1 species 2067572 0 0 species 1283291 1 Pseudomonas sp. URMO17WK12:I11 647 species 1649877 1 0 Pseudomonas sp. CCOS 191 660 Pseudomonas sp. SWI36 523 1 species 2083052 0 352 Pseudomonas sp. M30-35 0 1981174 species 1 Pseudomonas sp. S-6-2 405 0 1 species 1931241 0 1 species 237610 Pseudomonas psychrotolerans 783 Pseudomonas koreensis 744 0 species 198620 1 7833 0 6 species group 136841 1 species subgroup 1232139 0 594 Pseudomonas furukawaii 594 species 1149133 1 0 Pseudomonas aeruginosa 2566 1 species 287 0 species 53412 1 0 Pseudomonas resinovorans 573 2219 Pseudomonas mendocina 300 species 1 0 658 Pseudomonas alcaligenes 1 43263 species 0 1 species 53408 0 Pseudomonas citronellolis 1223 1 104087 species 0 944 Pseudomonas frederiksbergensis 0 1 species 216142 Pseudomonas rhizosphaerae 390 383 Pseudomonas silesiensis 0 1853130 species 1 0 136846 species group 2 4439 3881 578833 species subgroup 1 0 316 species 1 0 3881 Pseudomonas stutzeri 74829 species 1 0 558 Pseudomonas balearica 0 2 136842 species group 3180 1 587753 species 0 2472 Pseudomonas chlororaphis species 296 1 0 Pseudomonas fragi 708 Pseudomonas knackmussii 661 0 1 species 65741 700 Pseudomonas parafulva 0 1 157782 species 1 species 930166 0 Pseudomonas brassicacearum 979 12854 Moraxellaceae 76 1 0 42 468 family 0 1 genus 469 25 Acinetobacter 9418 129 0 species 40216 1 Acinetobacter radioresistens 309 Acinetobacter schindleri 393 species 108981 1 0 290 species 202950 1 0 0 62977 strain 1 290 Acinetobacter sp. ADP1 species 1324350 1 0 Acinetobacter equi 367 Acinetobacter indicus 342 0 species 756892 1 3695 0 5 909768 species group 1593 Acinetobacter baumannii 0 470 species 1 Acinetobacter calcoaceticus 573 0 1 species 471 Acinetobacter lactucae 181 species 1785128 1 0 1 species 106654 0 Acinetobacter nosocomialis 361 987 Acinetobacter pittii 0 48296 species 1 0 1 29430 species 284 Acinetobacter haemolyticus Acinetobacter junii 357 species 40215 1 0 1874 0 no rank 196816 7 1758189 species 1 0 253 Acinetobacter sp. ACNIH2 0 species 1646498 1 Acinetobacter sp. TTH0-4 229 204 Acinetobacter sp. TGL-Y2 0 1 1407071 species 0 2079596 species 1 266 Acinetobacter sp. SWBY1 1 1636603 species 0 300 Acinetobacter sp. ACNIH1 1808001 species 1 0 423 Acinetobacter sp. LoGeW2-3 199 Acinetobacter sp. NCu2D-2 0 1 1608473 species species 106648 1 0 Acinetobacter bereziniae 260 1 species 1789224 0 Acinetobacter larvae 171 Acinetobacter johnsonii 329 species 40214 1 0 0 1 species 1148157 Acinetobacter oleivorans 287 0 species 487316 1 Acinetobacter soli 331 2 Moraxella 1258 genus 475 5 0 1 503 Moraxella osloensis 0 34062 species 1 0 1 species 480 Moraxella catarrhalis 182 1 386891 species 0 371 Moraxella bovoculi Moraxella ovis 200 species 29433 1 0 35 Psychrobacter 2102 11 genus 497 1 0 0 species 261164 1 Psychrobacter alimentarius 223 0 6 196806 no rank 1109 0 1 species 1720344 Psychrobacter sp. AntiMn-1 157 0 1028416 species 1 244 Psychrobacter sp. DAB_AL43B Psychrobacter sp. PRwf-1 139 1 species 349106 0 1699624 species 1 0 174 Psychrobacter sp. P11G5 1 species 571800 0 Psychrobacter sp. G 249 1 1699622 species 0 146 Psychrobacter sp. P2G3 0 species 330922 1 Psychrobacter cryohalolentis 247 0 1 334543 species 344 Psychrobacter arcticus 45610 species 1 0 144 Psychrobacter urativorans 26024 Xanthomonadales 273 1 0 53 135614 order 0 1 family 1775411 14 Rhodanobacteraceae 4505 123 2 70411 genus 1 0 2 414 Frateuria 81475 species 1 0 412 Frateuria aurantia 4 genus 231454 1 0 19 Dyella 1912 species 1379159 1 0 Dyella jiangningensis 514 species 231455 1 0 Dyella japonica 798 species 445710 1 0 Dyella thiooxydans 581 2 242605 genus 1 0 6 401 Luteibacter 0 242606 species 1 395 Luteibacter rhizovicinus Dokdonella 627 13 0 1 genus 323413 2 Dokdonella koreensis 614 0 1 species 323415 4 600 Rhodanobacter 75309 genus 2 0 1 0 species 666685 1 Rhodanobacter denitrificans 596 428 0 genus 2233801 1 1 species 2021234 0 Xanthomonadales bacterium D13 428 240 21246 Xanthomonadaceae 38 32033 family 1 0 7116 Stenotrophomonas 188 1 0 9 40323 genus 196198 no rank 4 0 1832 0 species 2005046 1 Stenotrophomonas sp. WZN-1 432 1 1904944 species 0 537 Stenotrophomonas sp. LM091 Stenotrophomonas sp. MYb57 462 0 1 species 1827305 Stenotrophomonas sp. KCTC 12332 401 1 species 1793721 0 3385 species group 995085 1 0 0 1 species 40324 Stenotrophomonas maltophilia 3385 788 Stenotrophomonas acidaminiphila 0 128780 species 1 0 1 species 216778 Stenotrophomonas rhizophila 477 446 Stenotrophomonas nitritireducens 0 1 83617 species Xanthomonas 8873 500 1 0 17 genus 338 1 species 29447 0 Xanthomonas albilineans 297 299 Xanthomonas euvesicatoria 0 456327 species 1 Xanthomonas axonopodis 316 species 53413 1 0 449 Xanthomonas perforans 0 1 442694 species species 347 1 0 Xanthomonas oryzae 844 0 1 species 343 Xanthomonas translucens 728 1985254 species 1 0 302 Xanthomonas phaseoli 0 2 643453 species group 1527 Xanthomonas fuscans 392 0 1 species 366648 species 346 1 0 Xanthomonas citri 1135 452 Xanthomonas hortorum 1 56454 species 0 Xanthomonas vesicatoria 455 1 species 56460 0 307 Xanthomonas vasicola 1 56459 species 0 269 Xanthomonas alfalfae 0 366650 species 1 259 Xanthomonas fragariae 1 48664 species 0 Xanthomonas sacchari 510 0 1 species 56458 1359 Xanthomonas campestris 0 339 species 1 19 1433 Pseudoxanthomonas 83618 genus 3 0 1 314722 species 1 0 1042 Pseudoxanthomonas suwonensis 372 Pseudoxanthomonas spadix 415229 species 1 0 2748 Lysobacter 32 1 0 5 68 genus 0 1 species 262324 Lysobacter gummosus 585 1 435897 species 0 812 Lysobacter capsici 0 1 84531 species 643 Lysobacter antibioticus 1 species 69 0 Lysobacter enzymogenes 676 3 Luteimonas 310 2 genus 83614 1 0 307 Luteimonas sp. 100111 1 2006110 species 0 0 genus 2370 1 526 Xylella fastidiosa 526 1 species 2371 0 897 2 no rank 33811 0 endosymbiont of unidentified scaly snail isolate Monju 532 0 species 1248727 1 gamma proteobacterium HdN1 365 0 1 species 83406 Nevskiales 515 3 1 0 4 order 1775403 2 family 2689614 0 497 2 469322 genus 1 0 5 497 Steroidobacter 465721 species 1 0 492 Steroidobacter denitrificans Sinobacteraceae 15 0 family 568386 1 1 0 18 118969 order 4029 Legionellales 6 444 family 14 0 1 5 3711 Legionellaceae 93 1 genus 465 0 93 Tatlockia micdadei 0 1 451 species 12 445 genus 1 0 13 3613 Legionella Legionella sainthelensi 144 0 1 species 28087 Legionella waltersii 330 species 66969 1 0 Legionella clemsonensis 310 1 species 1867846 0 0 449 species 1 294 Legionella hackeliae Legionella pneumophila 1385 0 species 446 1 species 452 1 0 Legionella spiritensis 226 212 Legionella fallonii 0 96230 species 1 1 2005262 species 0 53 Legionella endosymbiont of Polyplax serrata 297 Legionella longbeachae 450 species 1 0 127 Legionella lansingensis 1 45067 species 0 0 species 29423 1 Legionella oakridgensis 222 0 family 118968 3 312 102 no rank 134284 1 0 0 1 1592897 species 102 Coxiella-like endosymbiont 210 0 genus 776 2 184 Coxiella burnetii 777 species 1 0 26 0 no rank 2676648 1 325775 species 1 0 26 Coxiella endosymbiont of Amblyomma americanum 1 0 4 1934945 order 579 Immundisolibacterales 9 Immundisolibacteraceae 570 5 1 0 3 family 1934946 Immundisolibacter 565 2 1 0 2 genus 1934947 Immundisolibacter cernigliae 563 species 1810504 1 0 1 0 102 order 135622 Alteromonadales 26523 41 319 family 267891 2 0 10 Moritella 319 2 genus 58050 1 0 1 80854 species 0 309 Moritella viscosa 8 family 267889 1 0 1 Colwelliaceae 2068 254 0 1518149 genus 1 Thalassotalea crassostreae 254 0 species 1763536 1 6 28228 genus 1 0 9 1813 Colwellia 1967665 species 1 0 329 Colwellia beringensis 28229 species 1 0 470 Colwellia psychrerythraea 3 no rank 196834 0 1005 0 1 58049 species 287 Colwellia sp. MT41 275 Colwellia sp. PAMC 21821 1 1816219 species 0 0 1 species 1816218 Colwellia sp. PAMC 20917 443 family 267894 4 0 1 1 Psychromonadaceae 678 3 genus 67572 1 0 8 Psychromonas 677 445 Psychromonas ingrahamii 357794 species 1 0 2614957 no rank 1 0 224 0 1 species 314282 Psychromonas sp. CNPT3 224 Idiomarinaceae 864 33 1 0 6 family 267893 831 Idiomarina 3 0 1 135575 genus 5 Idiomarina loihiensis 246 species 135577 1 0 187 Idiomarina piscisalsi 1 1096243 species 0 395 0 no rank 2614829 2 0 1 2100422 species 188 Idiomarina sp. OT37-5b 2055892 species 1 0 207 Idiomarina sp. X4 Alteromonadaceae 8588 73 1 0 28 family 72275 226 genus 10 0 1 16 2620 Alteromonas 255 Alteromonas australica 589873 species 1 0 0 species 314275 1 Alteromonas mediterranea 556 0 3 no rank 2614992 449 0 1 species 1917158 Alteromonas sp. RW2A1 115 0 1 1777491 species 243 Alteromonas sp. Mac1 1 species 2058133 0 Alteromonas sp. MB-3u-76 91 1 287094 species 0 232 Alteromonas addita 1 28108 species 0 655 Alteromonas macleodii 0 species 715451 1 Alteromonas naphthalenivorans 150 1 233316 species 0 307 Alteromonas stellipolaris 271 0 genus 1621534 1 species 326544 1 0 Paraglaciecola psychrophila 271 2 genus 261825 1 0 25 Agarivorans 300 species 680279 1 0 Agarivorans gilvus 275 11 608 Lacimicrobium 1751872 genus 2 0 1 1 1526571 species 0 597 Lacimicrobium alkaliphilum 4266 Marinobacter 33 0 1 2742 genus 10 Marinobacter salinus 350 species 1874317 1 0 Marinobacter hydrocarbonoclasticus 871 species 2743 1 0 Marinobacter similis 322 0 1 species 1420916 496 Marinobacter adhaerens 0 1 1033846 species 1 species 1420917 0 Marinobacter salarius 556 Marinobacter psychrophilus 329 1 species 330734 0 1309 83889 no rank 3 0 Marinobacter sp. BSs20148 253 0 species 490759 1 Marinobacter sp. CP1 433 0 1 species 1671721 1 1749259 species 0 623 Marinobacter sp. LQ44 450 0 genus 89404 2 265 0 1 2618684 no rank 265 Glaciecola sp. 4H-3-7+YE-5 0 1 983545 species 0 1 300231 species 185 Glaciecola nitratireducens 53 Shewanellaceae 7353 family 267890 25 0 1 24 22 genus 1 0 134 7300 Shewanella 404011 species 1 0 184 Shewanella piezotolerans 0 1 225848 species 270 Shewanella psychrophila 0 1 species 24 Shewanella putrefaciens 361 Shewanella bicestrii 320 species 2018305 1 0 260 Shewanella halifaxensis 0 271098 species 1 281 Shewanella marisflavi 260364 species 1 0 0 1 56812 species 289 Shewanella frigidimarina 385 Shewanella sediminis 0 1 271097 species 0 1 species 70864 Shewanella pealeana 249 679 Shewanella baltica 62322 species 1 0 1 359303 species 0 501 Shewanella loihica 246 Shewanella oneidensis 0 1 70863 species 1685 196818 no rank 6 0 1 species 60481 0 Shewanella sp. MR-7 351 0 species 2029986 1 Shewanella sp. WE21 174 Shewanella sp. MR-4 261 0 species 60480 1 Shewanella sp. ANA-3 426 1 species 94122 0 0 1 species 351745 Shewanella sp. W3-18-1 301 0 1 species 2059264 Shewanella sp. Pdp11 172 species 60961 1 0 Shewanella woodyi 260 1 60217 species 0 310 Shewanella violacea Shewanella amazonensis 477 species 60478 1 0 186 Shewanella denitrificans 0 1 192073 species species 93973 1 0 Shewanella japonica 223 0 1 family 267892 3 Ferrimonadaceae 555 4 3 Ferrimonas 551 2 genus 44011 1 0 Ferrimonas balearica 548 0 1 species 44012 6057 Pseudoalteromonadaceae 25 1 0 25 267888 family genus 53246 24 0 1 177 Pseudoalteromonas 6032 215 Pseudoalteromonas rubra 1 43658 species 0 0 1 species 43657 Pseudoalteromonas luteoviolacea 273 0 1 species 394751 Pseudoalteromonas arctica 153 Pseudoalteromonas espejiana 199 1 species 28107 0 1 species 314281 0 Pseudoalteromonas tunicata 222 Pseudoalteromonas translucida 191 0 species 166935 1 0 1 species 43662 Pseudoalteromonas piscicida 316 152297 species 1 0 182 Pseudoalteromonas issachenkonii 234 Pseudoalteromonas marina 1 267375 species 0 458 Pseudoalteromonas atlantica 0 288 species 1 species 228 1 0 Pseudoalteromonas haloplanktis 213 1 species 28109 0 Pseudoalteromonas nigrifaciens 191 325 Pseudoalteromonas piratica 1 1348114 species 0 Pseudoalteromonas spongiae 418 1 species 298657 0 43659 species 1 0 208 Pseudoalteromonas tetraodonis 5 no rank 194690 0 1261 0 species 1514074 1 Pseudoalteromonas sp. NC201 273 1761891 species 1 0 265 Pseudoalteromonas sp. 13-15 282 Pseudoalteromonas sp. Bsw20308 0 1 283699 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 276 0 1 species 1720343 0 species 234831 1 Pseudoalteromonas sp. SM9913 165 209 Pseudoalteromonas phenolica 161398 species 1 0 261 Pseudoalteromonas agarivorans 176102 species 1 0 species 247523 1 0 Pseudoalteromonas aliena 326 135615 order 1 0 158 158 0 868 family 1 1 869 genus 0 158 158 Dichelobacter nodosus 1 870 species 0 order 72273 33 0 1 2 Thiotrichales 6933 0 1 34064 family 14 4260 Francisellaceae 5 1869285 genus 1 0 147 594679 species 1 0 147 Allofrancisella guangzhouensis 1 0 12 262 genus 4108 Francisella 12 Francisella sp. TX077308 279 0 species 573569 1 395 0 no rank 2610885 2 1547445 species 1 0 204 Francisella sp. FSC1006 0 1 475375 species 191 Francisella sp. MA067296 219 Francisella sp. TX077310 0 1 573570 species Francisella tularensis 1102 0 species 263 1 363 Francisella hispaniensis 1 622488 species 0 Francisella sp. CA97-1460 238 1 species 1542390 0 168 Francisella halioticida 1 549298 species 0 0 1 28110 species 656 Francisella philomiragia 281 Francisella persica 0 1 954 species Francisella noatunensis 395 0 species 657445 1 0 1 135616 family 14 2165 Piscirickettsiaceae 30 0 2 933 genus 249 147268 species 1 0 125 Thiomicrospira cyclica 0 92245 species 1 124 Thiomicrospira aerophila 0 1 1237 genus 2 380 Piscirickettsia 3 377 Piscirickettsia salmonis 1238 species 1 0 1 0 2 genus 28884 Hydrogenovibrio 222 5 217 Hydrogenovibrio crunogenus 39765 species 1 0 595 Methylophaga 2 1 0 3 40222 genus 0 species 754477 1 Methylophaga frappieri 241 754476 species 1 0 352 Methylophaga nitratireducenticrescens 0 1 genus 34067 4 Cycloclasticus 689 3 Cycloclasticus zancles 232 species 1329899 1 0 2 no rank 2621467 0 454 0 1 385025 species 208 Cycloclasticus sp. P1 0 728003 species 1 246 Cycloclasticus sp. PY97N 5 Thiotrichaceae 506 family 135617 4 0 1 0 1 genus 1021 260 1 species 288004 0 Beggiatoa leptomitoformis 260 genus 40751 2 0 1 1 Thioploca 241 0 1 species 40754 Thioploca ingrica 240 280 165391 Betaproteobacteria 344 28216 class 1 0 Rhodocyclales 8423 106 0 1 order 206389 22 0 1 family 75787 6 Rhodocyclaceae 1936 57 9 Aromatoleum 501 genus 551759 2 0 1 0 1 551760 species 492 Aromatoleum aromaticum 878 Azospira 17 0 1 146937 genus 2 1 species 146939 0 Azospira oryzae 861 500 0 75788 no rank 1 1 species 1898103 0 Rhodocyclaceae bacterium 500 245 5829 Zoogloeaceae 12 2008794 family 1 0 1 0 5 12960 genus 2334 Azoarcus 77 2629479 no rank 2 0 1292 Azoarcus sp. CIB 598 0 1 species 198107 1 748247 species 0 694 Azoarcus sp. KH32C 1 2067960 species 0 444 Azoarcus sp. SY39 Azoarcus olearius 521 0 species 418699 1 3250 Thauera 118 0 1 33057 genus 6 Thauera humireducens 563 0 1 species 1134435 0 1 96773 species 513 Thauera chlorobenzoica 1498 0 2609274 no rank 2 758 Thauera sp. K11 0 1 2005884 species Thauera sp. MZ1T 740 species 85643 1 0 0 species 59405 1 Thauera aromatica 558 7 Azonexaceae 552 family 2008795 3 0 1 10 545 Dechloromonas 73029 genus 2 0 1 0 259537 species 1 535 Dechloromonas aromatica 206351 order 35 0 1 111 14704 Neisseriales 0 1 family 1499392 13 Chromobacteriaceae 5926 73 2 genus 187 1 0 3 Aquaspirillum 759 1 2620219 no rank 0 756 1 species 1938604 0 Aquaspirillum sp. LM1 756 14 Jeongeupia 618 2 genus 885864 1 0 604 0 2619593 no rank 1 604 Jeongeupia sp. USM3 1 1906741 species 0 875 Pseudogulbenkiania 10 0 1 568394 genus 2 865 1 2642558 no rank 0 865 Pseudogulbenkiania sp. NH8B 748280 species 1 0 0 no rank 90153 4 2881 59 2881 Chromobacterium 4 535 genus 1 0 0 1 1108595 species 1254 Chromobacterium vaccinii 932 Chromobacterium violaceum 1 536 species 0 636 0 2641838 no rank 1 species 2059672 1 0 Chromobacterium sp. ATCC 53434 636 8 720 Laribacter 2 168470 genus 1 0 Laribacter hongkongensis 712 species 168471 1 0 57 Neisseriaceae 8667 21 family 481 1 0 212 0 1 genus 71 1 species 72 0 Simonsiella muelleri 212 0 1 genus 59 3 Vitreoscilla 842 6 no rank 2627922 1 0 283 283 Vitreoscilla sp. C1 0 96942 species 1 Vitreoscilla filiformis 553 species 63 1 0 188 0 1 421605 no rank Neisseriaceae bacterium DSM 100970 188 0 species 2052837 1 1 1193515 genus 0 574 0 1196083 species 1 574 Snodgrassella alvi Neisseria 6270 92 0 1 genus 482 12 443 Neisseria elongata 1 495 species 0 373 Neisseria mucosa 0 1 488 species 2 2623750 no rank 0 1120 Neisseria sp. KEM232 661 species 655307 1 0 459 Neisseria sp. 10022 1853276 species 1 0 0 28091 species 1 427 Neisseria weaveri species 490 1 0 Neisseria sicca 347 0 485 species 1 392 Neisseria gonorrhoeae 533 Neisseria lactamica 486 species 1 0 Neisseria sp. 10023 738 0 species 1853278 1 487 species 1 0 1228 Neisseria meningitidis Neisseria zoodegmatis 577 species 326523 1 0 1 524 Eikenella 2 538 genus 1 0 1 species 539 0 Eikenella corrodens 523 1 0 231 order 80840 Burkholderiales 131712 1601 0 17 224471 no rank 6515 15 Leptothrix 781 2 genus 88 1 0 0 species 34029 1 Leptothrix cholodnii 766 Roseateles 744 40 1 0 2 genus 93681 Roseateles depolymerans 704 species 76731 1 0 316612 genus 2 0 1 15 630 Methylibium 615 Methylibium petroleiphilum 105560 species 1 0 635 [Polyangium] brachysporum 1 413882 species 0 2 genus 28067 1 0 22 Rubrivivax 940 0 28068 species 1 918 Rubrivivax gelatinosus 0 1 genus 318147 2 Paucibacter 572 3 0 no rank 2642959 1 569 0 1 1768242 species 569 Paucibacter sp. KCTC 42545 28 702 Rhizobacter 2 212743 genus 1 0 1 species 946333 0 Rhizobacter gummiphilus 674 35 Mitsuaria 684 genus 65047 2 0 1 649 0 1 no rank 2648776 0 1 1658665 species 649 Mitsuaria sp. 7 0 1 genus 32012 2 Thiomonas 827 25 0 1 species 926 Thiomonas intermedia 802 Oxalobacteraceae 16979 147 1 0 28 family 75682 888 0 846 genus 1 Oxalobacter formigenes 888 species 847 1 0 0 1 303379 genus 3 585 Herminiimonas 1 0 1809410 species 1 241 Herminiimonas arsenitoxidans Herminiimonas arsenicoxydans 343 species 204773 1 0 1 0 4 genus 202907 Collimonas 2910 36 1 species 158899 0 Collimonas fungivorans 1018 Collimonas arenae 1116 0 1 species 279058 Collimonas pratensis 740 0 1 species 279113 3897 Herbaspirillum 104 0 1 963 genus 6 Herbaspirillum seropedicae 873 0 species 964 1 0 1 2624150 no rank 530 0 2025949 species 1 530 Herbaspirillum sp. meg3 731 Herbaspirillum rubrisubalbicans 0 1 80842 species 0 1 species 92645 Herbaspirillum frisingense 981 1 341045 species 0 678 Herbaspirillum hiltneri 119 Massilia 4371 6 genus 149698 1 0 Massilia putida 882 0 species 1141883 1 0 2609279 no rank 2 1713 965 Massilia sp. NR 4-1 0 1 1678028 species species 1707785 1 0 Massilia sp. WG5 748 0 species 2072590 1 Massilia sp. ZMN-3 950 0 1 species 2045208 Massilia sp. B2 707 79 Janthinobacterium 4181 genus 29580 7 0 1 Janthinobacterium agaricidamnosum 1005 0 species 55508 1 1 species 368607 0 Janthinobacterium svalbardensis 685 2412 2610881 no rank 4 0 1 species 1644131 0 Janthinobacterium sp. 1_2014MBL_MicDiv 828 0 species 375286 1 Janthinobacterium sp. Marseille 416 Janthinobacterium sp. B9-8 382 0 species 1236179 1 786 Janthinobacterium sp. LM6 0 1938606 species 1 84 119060 family 1 0 374 51791 Burkholderiaceae 0 2571159 genus 1 307 412963 species 1 0 307 Paraburkholderia rhizoxinica 1 0 10 93217 genus 5144 Pandoraea 120 511 Pandoraea sputorum 93222 species 1 0 93218 species 1 0 640 Pandoraea apista 656178 species 1 0 607 Pandoraea vervacti Pandoraea pulmonicola 478 species 93221 1 0 0 species 93220 1 Pandoraea pnomenusa 619 610 Pandoraea norimbergensis 1 93219 species 0 0 1 species 656179 Pandoraea faecigallinarum 463 514 Pandoraea thiooxydans 445709 species 1 0 Pandoraea oxalativorans 582 0 species 573737 1 2 450 Polynucleobacter 4 44013 genus 1 0 Polynucleobacter duraquae 161 1 species 1835254 0 Polynucleobacter necessarius 128 0 species 576610 1 159 Polynucleobacter asymbioticus 1 576611 species 0 1227 Burkholderia 25539 genus 32008 41 0 1 41899 species 1 0 660 Burkholderia plantarii Burkholderia glumae 1004 species 337 1 0 0 87882 species group 19 12892 species 1503055 1 0 Burkholderia territorii 176 species 101571 1 0 Burkholderia ubonensis 1282 species 1207504 1 0 Burkholderia pseudomultivorans 439 358 Burkholderia stagnalis 0 1503054 species 1 1 species 488446 0 Burkholderia latens 450 0 1 species 95485 Burkholderia stabilis 731 1 species 87883 0 Burkholderia multivorans 877 Burkholderia ambifaria 551 1 species 152480 0 0 1 488447 species 356 Burkholderia contaminans 0 1 95486 species 2026 Burkholderia cenocepacia Burkholderia vietnamiensis 579 0 species 60552 1 1 152500 species 0 409 Burkholderia dolosa 1 species 265293 0 [Pseudomonas] mesoacidophila 396 1 488729 species 0 391 Burkholderia metallica 476 Burkholderia seminalis 0 1 488731 species 1 species 60550 0 Burkholderia pyrrocinia 285 300 Burkholderia diffusa 0 488732 species 1 Burkholderia cepacia 2231 0 species 292 1 0 species 482957 1 Burkholderia lata 579 4944 0 2613784 no rank 11 0 1 640510 species 484 Burkholderia sp. CCGE1001 551 Burkholderia sp. RPE67 0 758796 species 1 0 1468409 species 1 434 Burkholderia sp. 2002721687 0 1 1795043 species 507 Burkholderia sp. PAMC 26561 0 1 1740163 species 498 Burkholderia sp. Bp7605 0 1 species 1097668 Burkholderia sp. YI23 526 Burkholderia sp. Bp5365 434 0 1 species 1740162 1 species 1795874 0 Burkholderia sp. PAMC 28687 357 339 Burkholderia sp. HB1 1 1678678 species 0 0 1 416344 species 332 Burkholderia sp. KJ006 0 species 640512 1 Burkholderia sp. CCGE1003 482 1 species 28095 0 Burkholderia gladioli 1048 3764 0 7 111527 species group 260 Burkholderia mallei 13373 species 1 0 Burkholderia sp. MSMB0266 450 1 species 1637837 0 species 57975 1 0 Burkholderia thailandensis 917 Burkholderia sp. MSMB617WGS 372 1 species 1637831 0 450 Burkholderia oklahomensis 342113 species 1 0 Burkholderia pseudomallei 838 species 28450 1 0 477 Burkholderia sp. MSMB0852 1637841 species 1 0 1 genus 1827195 0 541 1 species 758793 0 Burkholderia sp. RPE64 541 142 7661 Paraburkholderia 1822464 genus 12 0 1 Paraburkholderia hospita 675 0 species 169430 1 Paraburkholderia phymatum 646 0 1 species 148447 Paraburkholderia terrae 604 0 1 species 311230 1 36873 species 0 782 Paraburkholderia xenovorans 0 1 species 134537 Paraburkholderia fungorum 665 0 1 species 261302 Paraburkholderia phytofirmans 534 0 1 species 252970 Paraburkholderia phenoliruptrix 542 948107 species 1 0 861 Paraburkholderia sprentiae Paraburkholderia caribensis 827 species 75105 1 0 2026199 species 1 0 789 Paraburkholderia aromaticivorans 0 no rank 2615204 1 594 1 1926494 species 0 594 Paraburkholderia sp. SOS3 Cupriavidus 6426 244 0 1 genus 106589 9 0 1 248026 species 572 Cupriavidus pinatubonensis 0 119219 species 1 664 Cupriavidus metallidurans species 106590 1 0 Cupriavidus necator 1192 0 68895 species 1 771 Cupriavidus basilensis 1 82541 species 0 521 Cupriavidus gilardii Cupriavidus sp. USMAA1020 790 0 species 367825 1 1672 0 no rank 2640874 2 819 Cupriavidus sp. USMAA2-4 1 876364 species 0 Cupriavidus sp. USMAHM13 853 1 species 1389192 0 5349 Ralstonia 116 1 0 5 48736 genus 0 1 species 105219 Ralstonia mannitolilytica 779 Ralstonia insidiosa 872 1 species 190721 0 species 329 1 0 Ralstonia pickettii 1338 2244 Ralstonia solanacearum 0 1 305 species 0 1 506 family 41 23890 Alcaligenaceae 226 1 0 6 genus 222 Achromobacter 8260 301 1658 Achromobacter denitrificans 0 1 32002 species Achromobacter xylosoxidans 3272 species 85698 1 0 905 Achromobacter insolitus 1 217204 species 0 Achromobacter spanius 1364 species 217203 1 0 0 1 2626865 no rank 760 760 Achromobacter sp. AONIH1 1 1758194 species 0 152 1100891 genus 1 0 0 1 643674 species 152 Paenalcaligenes hominis 0 1 genus 507 2 Alcaligenes 1094 25 Alcaligenes faecalis 1069 0 1 species 511 35 836 Castellaniella 2 359336 genus 1 0 Castellaniella defragrans 801 0 species 75697 1 1 0 2 genus 1921582 Orrella 643 11 species 1851544 1 0 Orrella dioscoreae 632 Pusillimonas 342 1 1 0 2 genus 305976 341 no rank 2640016 1 0 Pusillimonas sp. T7-7 341 1 species 1007105 0 29574 genus 2 0 451 177 Taylorella equigenitalis 1 29575 species 0 84590 species 1 0 274 Taylorella asinigenitalis 10662 Bordetella 329 1 0 17 517 genus 575 Bordetella pertussis 0 520 species 1 0 1416806 species 1 736 Bordetella genomosp. 8 1 species 123899 0 Bordetella trematum 703 0 no rank 2630031 1 544 1697043 species 1 0 544 Bordetella sp. H567 species 94624 1 0 Bordetella petrii 657 species 518 1 0 Bordetella bronchiseptica 1161 1 species 1331258 0 Bordetella pseudohinzii 606 0 1 463025 species 854 Bordetella bronchialis 362 Bordetella avium 1 521 species 0 0 35814 species 1 399 Bordetella holmesii 776 Bordetella hinzii 1 103855 species 0 Bordetella genomosp. 9 734 0 1 species 1416803 Bordetella flabilis 477 0 1 species 463014 567 Bordetella genomosp. 13 0 463040 species 1 0 species 463024 1 Bordetella genomosp. 6 604 1 519 species 0 578 Bordetella parapertussis 1 0 3 genus 290425 Advenella 838 5 0 310575 species 1 272 Advenella kashmirensis 1 302406 species 0 561 Advenella mimigardefordensis genus 1472344 2 0 1 1 Basilea 200 0 1472345 species 1 199 Basilea psittacipulmonis 0 1 genus 90243 186 Oligella urethralis 186 0 species 90245 1 80841 no rank 2 0 2121 0 1 species 1834205 Burkholderiales bacterium YL45 1597 524 Burkholderiales bacterium GJ-E10 0 1 1469502 species 481 28815 Comamonadaceae 58 80864 family 1 0 5 genus 28065 1 0 13 Rhodoferax 2145 436 Rhodoferax saidenbachensis 0 1484693 species 1 1 192843 species 0 546 Rhodoferax ferrireducens 785 Rhodoferax koreense 1 1842727 species 0 365 Rhodoferax antarcticus 0 81479 species 1 1 0 5 34072 genus 4092 Variovorax 90 1 436515 species 0 770 Variovorax boronicumulans 0 34073 species 1 1890 Variovorax paradoxus 0 no rank 663243 2 1342 0 1 2126319 species 961 Variovorax sp. PMC12 0 1795631 species 1 381 Variovorax sp. PAMC 28711 Ramlibacter 1249 11 0 1 genus 174951 2 0 species 94132 1 Ramlibacter tataouinensis 1238 611 0 2 2490452 genus 0 1458426 species 1 258 Comamonadaceae bacterium B1 Comamonadaceae bacterium A1 353 1 species 1458425 0 Comamonas 3083 22 1 0 4 genus 283 Comamonas kerstersii 838 1 species 225992 0 1540 Comamonas testosteroni 0 1 285 species 1082851 species 1 0 683 Comamonas serinivorans 0 1 1649468 genus 2 496 Melaminivora 15 0 no rank 2641902 1 481 481 Melaminivora sp. SC2-9 0 2109913 species 1 3 genus 219181 1 0 4 Ottowia 1087 455 no rank 2645081 1 0 Ottowia sp. oral taxon 894 455 species 1658672 1 0 Ottowia sp. KADR8-3 628 0 1 species 2109914 4 genus 47420 1 0 83 Hydrogenophaga 1705 1 1763535 species 0 393 Hydrogenophaga crassostreae 1229 no rank 2610897 2 0 0 species 1842537 1 Hydrogenophaga sp. RAC07 438 0 species 795665 1 Hydrogenophaga sp. PBC 791 0 1 52972 genus 3 1212 Polaromonas 37 0 no rank 2638319 1 583 296591 species 1 0 583 Polaromonas sp. JS666 1 species 216465 0 Polaromonas naphthalenivorans 592 5 873 Alicycliphilus 201096 genus 2 0 1 179636 species 1 0 868 Alicycliphilus denitrificans 95 3463 Delftia 80865 genus 5 0 1 Delftia acidovorans 855 0 1 species 80866 0 1 180282 species 883 Delftia tsuruhatensis 0 no rank 2613839 2 1630 Delftia sp. Cs1-4 820 1 species 742013 0 Delftia sp. HK171 810 0 1 species 1920191 180 4857 Acidovorax 9 12916 genus 1 0 2684926 no rank 4 0 2273 555 Acidovorax sp. JS42 232721 species 1 0 442 Acidovorax sp. T1 0 1 1858609 species 624 Acidovorax sp. RAC01 1842533 species 1 0 358220 species 1 0 652 Acidovorax sp. KKS102 Acidovorax citrulli 614 1 species 80869 0 Acidovorax ebreus 576 1 species 721785 0 0 80867 species 1 662 Acidovorax avenae 552 Acidovorax sp. NA3 0 1 553814 species 2 genus 238749 1 0 12 Diaphorobacter 599 Diaphorobacter polyhydroxybutyrativorans 587 1 species 1546149 0 0 1 1436289 genus 2 362 Candidatus Symbiobacter 2 0 1 species 1436290 Candidatus Symbiobacter mobilis 360 573 0 1 364316 genus 573 Verminephrobacter eiseniae 1 364317 species 0 0 1 genus 2678886 715 0 1 species 2116657 Melaminivora sp. SC2-7 715 5 544 Simplicispira 352450 genus 2 0 1 Simplicispira sp. SC1-8 539 0 species 2109915 1 3 668 Limnohabitans 665874 genus 3 0 1 665 2626134 no rank 2 0 1 1678128 species 0 375 Limnohabitans sp. 63ED37-2 290 Limnohabitans sp. 103DPR2 0 1678129 species 1 634 0 2 33809 no rank 0 1 species 1904640 Betaproteobacteria bacterium GR16-43 452 species 543913 1 0 beta proteobacterium CB 182 58 8518 Nitrosomonadales 42 32003 order 1 0 1 0 12 family 206379 Nitrosomonadaceae 2744 7 0 1 genus 914 7 Nitrosomonas 1706 10 44574 species 1 0 214 Nitrosomonas communis 504 2609265 no rank 2 0 Nitrosomonas sp. AL212 197 1 species 153948 0 307 Nitrosomonas sp. Is79A3 0 261292 species 1 331 Nitrosomonas ureae 0 1 44577 species 1 species 916 0 Nitrosomonas eutropha 247 1 species 915 0 Nitrosomonas europaea 400 Nitrosospira 1031 4 0 1 genus 35798 4 1 species 1231 0 Nitrosospira multiformis 324 35799 species 1 0 386 Nitrosospira briensis 0 1 1288494 species 317 Nitrosospira lacus 16 1259 Sterolibacteriaceae 2008793 family 5 0 1 2 378210 genus 1 0 17 586 Methyloversatilis 569 no rank 2639971 1 0 1 species 1842540 0 Methyloversatilis sp. RAC08 569 1 0 2 1054211 genus 657 Sulfuritalea 14 643 Sulfuritalea hydrogenivorans 0 748811 species 1 13 32011 family 1 0 10 2161 Methylophilaceae Methylovorus 766 10 0 1 genus 81682 3 379 0 2634027 no rank 1 species 887061 1 0 Methylovorus sp. MP688 379 Methylovorus glucosotrophus 377 1 species 266009 0 0 1 16 genus 2 339 Methylophilus 2 337 no rank 2630143 1 0 1662285 species 1 0 337 Methylophilus sp. TWE2 0 1 359407 genus 3 448 Methylotenera 2 233 Methylotenera mobilis 359408 species 1 0 Methylotenera versatilis 213 species 1055487 1 0 338 Methylobacillus 2 0 1 404 genus 2 0 405 species 1 336 Methylobacillus flagellatus 260 0 genus 1679002 2 0 1 1581557 species 73 Candidatus Methylopumilus planktonicus Candidatus Methylopumilus turicensis 187 0 1 species 1581680 2008790 family 3 0 1 10 442 Thiobacillaceae 2 919 genus 1 0 2 432 Thiobacillus 430 Thiobacillus denitrificans 0 36861 species 1 3 2772226 family 0 931 0 1 genus 935200 2 Sulfuricella 411 6 species 649841 1 0 Sulfuricella denitrificans 405 520 0 1778653 genus 1 0 no rank 2637784 1 520 Sulfuriferula sp. AH1 520 1 species 1985873 0 Gallionellaceae 923 11 1 0 5 family 90627 0 1 genus 314343 2 Sideroxydans 579 3 Sideroxydans lithotrophicus 576 0 1 species 63745 333 Gallionella 2 1 0 2 96 genus 331 Gallionella capsiferriformans 370405 species 1 0 0 11 no rank 119066 1120 0 1301080 genus 1 9 species 1160784 1 0 Candidatus Nasuia deltocephalinicola 9 1 0 6 genus 33055 Kinetoplastibacterium 487 7 Kinetoplastibacterium blastocrithidii 45 1 species 233181 0 127 Candidatus Kinetoplastibacterium crithidii 1 33056 species 0 994695 species 1 0 62 Candidatus Kinetoplastibacterium galatii 0 994692 species 1 125 Candidatus Kinetoplastibacterium desouzaii Candidatus Kinetoplastibacterium oncopeltii 121 1 species 994696 0 189384 genus 1 0 12 0 1 189385 species 12 Candidatus Tremblaya princeps Candidatus Accumulibacter 549 16 0 1 genus 327159 2 0 1 species 327160 Candidatus Accumulibacter phosphatis 533 0 1 genus 1381133 63 63 Candidatus Profftella armatura 1 669502 species 0 8 1553900 class 1 0 11 2464 Oligoflexia 17 1773 Bdellovibrionales 5 213481 order 1 0 22 Bdellovibrionaceae 1756 family 213483 4 0 1 4 1734 Bdellovibrio 3 958 genus 1 0 1497 Bdellovibrio bacteriovorus 1 959 species 0 Bdellovibrio exovorus 233 0 species 453816 1 2 2024979 order 0 680 0 family 263369 1 385 385 genus 146784 1 0 Bacteriovorax stolpii 385 1 species 960 0 family 1652132 1 0 295 295 0 1 1652133 genus 1 97084 species 0 295 Halobacteriovorax marinus 105111 195 subphylum 68525 0 125 class 28221 1 0 141 Deltaproteobacteria 72616 1 0 19 order 213118 Desulfobacterales 6531 63 21 Desulfobulbaceae 2688 family 213121 9 0 1 Desulfurivibrio 798 2 1 0 2 genus 427922 Desulfurivibrio alkaliphilus 796 species 427923 1 0 2 genus 109168 1 0 1 Desulfotalea 444 84980 species 1 0 443 Desulfotalea psychrophila Desulfocapsa 556 9 0 1 genus 53318 2 547 Desulfocapsa sulfexigens 0 65555 species 1 2 genus 893 1 0 3 Desulfobulbus 869 866 Desulfobulbus sp. ORNL 0 1 1986146 species Desulfobacteraceae 3780 16 1 0 9 family 213119 896 genus 3 0 1 6 1398 Desulfococcus 754 Desulfococcus oleovorans 0 1 181663 species 1 897 species 0 638 Desulfococcus multivorans genus 2295 2 0 1 2 Desulfobacterium 801 799 Desulfobacterium autotrophicum 1 2296 species 0 Desulfatibacillum 850 2 0 1 genus 218207 2 Desulfatibacillum alkenivorans 848 0 species 259354 1 715 1 genus 28222 0 0 1 species 28223 Desulfobacula toluolica 715 569 213113 order 5 0 1 0 5 117942 family 569 Desulfurellaceae 2 Desulfurella 352 5 0 1 genus 33001 2 0 1 species 33002 Desulfurella acetivorans 347 2 Hippea 215 genus 84404 2 0 1 1 species 84405 0 Hippea maritima 213 1 0 10 order 213462 Syntrophobacterales 2116 16 6 family 213468 1 0 8 Syntrophaceae 1516 478 Desulfomonile 1 1 0 2 2357 genus Desulfomonile tiedjei 477 1 species 2358 0 520 0 60892 genus 1 0 species 60893 1 Desulfobacca acetoxidans 520 43773 genus 2 0 1 6 510 Syntrophus 0 1 316277 species 504 Syntrophus aciditrophicus 584 Syntrophobacteraceae 3 0 1 213465 family 3 0 1 29526 genus 2 581 Syntrophobacter 5 0 species 119484 1 Syntrophobacter fumaroxidans 576 29 order 38 0 1 229 19047 Myxococcales 3629 8 80812 suborder 0 6 794 Sandaracinaceae 1055686 family 3 0 1 2 genus 1055688 1 0 2 Sandaracinus 788 Sandaracinus amylolyticus 786 0 1 species 927083 1 0 5 49 family 2835 Polyangiaceae 21 1 0 2 genus 50 Chondromyces 659 1 658 Chondromyces crocatus 1 52 species 0 1 0 2 39643 genus 2155 Sorangium 20 Sorangium cellulosum 2135 species 56 1 0 14262 26 suborder 80811 0 0 1 1524215 family 5 2801 Anaeromyxobacteraceae 28 0 1 161492 genus 4 2773 Anaeromyxobacter 78 0 no rank 2620896 2 1404 species 447217 1 0 Anaeromyxobacter sp. K 759 0 1 404589 species 645 Anaeromyxobacter sp. Fw109-5 species 161493 1 0 Anaeromyxobacter dehalogenans 1291 3 family 1524213 1 0 14 Vulgatibacteraceae 595 1 0 2 genus 1524214 Vulgatibacter 581 6 0 species 1391653 1 Vulgatibacter incomptus 575 Archangiaceae 4250 84 1 0 9 family 39 880 Stigmatella 8 0 1 40 genus 2 872 Stigmatella aurantiaca 41 species 1 0 Archangium 1261 15 1 0 2 genus 47 1246 Archangium gephyra 0 1 48 species 1 0 2 genus 44 Melittangium 859 12 Melittangium boletus 847 0 1 species 83453 1166 Cystobacter 6 1 0 2 42 genus 1160 Cystobacter fuscus 0 1 43 species 6616 Myxococcaceae 40 1 0 9 31 family genus 83461 3 0 1 56 Corallococcus 2124 0 1 35 species 944 Myxococcus macrosporus 1124 Corallococcus coralloides 0 1 184914 species 0 1 32 genus 5 4452 Myxococcus 142 83455 species 1 0 692 Myxococcus stipitatus species 1297742 1 0 Myxococcus hansupus 974 812 Myxococcus xanthus 1 34 species 0 0 1 33 species 1832 Myxococcus fulvus 3 suborder 224462 0 927 224464 family 3 0 1 11 927 Kofleriaceae 916 Haliangium 16 0 1 162027 genus 2 species 80816 1 0 Haliangium ochraceum 900 4 order 453227 1 0 9 Desulfarculales 1041 3 453228 family 1 0 16 1032 Desulfarculaceae 2 genus 453229 1 0 10 Desulfarculus 1016 0 1 species 453230 Desulfarculus baarsii 1006 213115 order 24 0 1 139 29133 Desulfovibrionales 2 family 213117 1 0 1 Desulfohalobiaceae 378 377 1 genus 45662 0 0 1 45663 species 377 Desulfohalobium retbaense 101 Desulfovibrionaceae 26409 17 family 194924 1 0 1 0 9 872 genus 20375 Desulfovibrio 127 2945 Desulfovibrio fairfieldensis 44742 species 1 0 1414 1 2593640 no rank 0 Desulfovibrio sp. G11 1414 1 species 631220 0 Desulfovibrio alaskensis 1379 0 1 species 58180 3122 Desulfovibrio desulfuricans 876 species 1 0 901 species 1 0 3926 Desulfovibrio piger 1725232 species 1 0 593 Candidatus Desulfovibrio trichonymphae 1545 Desulfovibrio magneticus 0 184917 species 1 Desulfovibrio vulgaris 5324 species 881 1 0 1058 2582840 genus 1 0 0 1 species 873 Desulfovibrio africanus 1058 647 0 genus 41707 1 0 29546 species 1 647 Lawsonia intracellularis 877 0 1 genus 2794998 0 880 species 1 877 Desulfovibrio salexigens Pseudodesulfovibrio 3351 20 1 0 4 genus 2035811 1 species 182210 0 Pseudodesulfovibrio aespoeensis 1018 1716143 species 1 0 1525 Pseudodesulfovibrio indicus 0 species 57320 1 Pseudodesulfovibrio profundus 788 5 Desulfomicrobiaceae 2207 family 213116 4 0 1 0 1 genus 898 3 Desulfomicrobium 2202 8 species 132132 1 0 Desulfomicrobium orale 1084 Desulfomicrobium baculatum 1110 0 species 899 1 183 Desulfuromonadales 14038 order 69541 24 0 1 0 1 213421 family 9 4597 Desulfuromonadaceae 71 Pelobacter 2845 22 1 0 5 genus 18 556 0 1 no rank 2620299 0 1 1842532 species 556 Pelobacter sp. SFB93 Pelobacter acetylenicus 540 species 29542 1 0 19 species 1 0 709 Pelobacter carbinolicus 0 1 29543 species 1018 Pelobacter propionicus 25 Desulfuromonas 1681 genus 890 3 0 1 0 species 1603606 1 Desulfuromonas soudanensis 800 1 2614637 no rank 0 856 0 species 1823759 1 Desulfuromonas sp. DDH964 856 family 213422 14 0 1 56 Geobacteraceae 9258 3 814 Geoalkalibacter 392332 genus 2 0 1 811 Geoalkalibacter subterraneus 1 483547 species 0 8388 Geobacter 132 1 0 11 28231 genus 764 Geobacter pickeringii 0 1 345632 species 636 Geobacter daltonii 0 1203471 species 1 1870 0 no rank 2627627 2 0 443143 species 1 1066 Geobacter sp. M18 Geobacter sp. M21 804 1 species 443144 0 Geobacter sulfurreducens 728 0 species 35554 1 1 species 225194 0 Geobacter bemidjiensis 887 Geobacter anodireducens 766 species 1340425 1 0 1 28232 species 0 699 Geobacter metallireducens 1 species 351604 0 Geobacter uraniireducens 993 913 Geobacter lovleyi 313985 species 1 0 0 1 29547 class 70 32495 Epsilonproteobacteria 24 31652 Campylobacterales 506 0 1 213849 order 65 Helicobacteraceae 3606 6 0 1 family 72293 15 8 Helicobacter 3386 12 genus 209 1 0 1 species 212 0 Helicobacter acinonychis 141 180 1 no rank 2593540 0 0 1 species 222136 Helicobacter sp. MIT 01-6242 180 1512 Helicobacter pylori 0 210 species 1 Helicobacter mustelae 166 1 species 217 0 species 138563 1 0 Helicobacter cetorum 459 Helicobacter felis 64 0 species 214 1 Helicobacter himalayensis 151 0 species 1591088 1 Helicobacter typhlonius 158 0 1 species 76936 Helicobacter hepaticus 219 0 species 32025 1 1 species 37372 0 Helicobacter bilis 151 0 species 213 1 Helicobacter cinaedi 177 2 genus 843 1 0 1 Wolinella 214 844 species 1 0 213 Wolinella succinogenes 0 3 2771471 family 845 498 2 202746 genus 0 1 202747 species 0 336 Sulfurimonas autotrophica 162 Sulfurimonas denitrificans 39766 species 1 0 genus 286130 1 0 347 347 Sulfuricurvum kujiense 0 148813 species 1 1 0 41 72294 family 25225 Campylobacteraceae 1601 Campylobacter 18905 331 0 1 genus 194 26 186 Campylobacter iguaniorum 0 1 1244531 species 750 Campylobacter fetus 1 196 species 0 Campylobacter subantarcticus 270 0 species 497724 1 207 Campylobacter insulaenigrae 0 260714 species 1 Campylobacter gracilis 303 0 species 824 1 0 198 species 1 287 Campylobacter hyointestinalis 7174 Campylobacter coli 0 1 195 species 996 Campylobacter lari 1 201 species 0 1 species 199 0 Campylobacter concisus 446 206 species 1 0 375 Campylobacter sputorum Campylobacter curvus 219 1 species 200 0 Campylobacter ureolyticus 225 1 species 827 0 0 species 76517 1 Campylobacter hominis 340 Campylobacter avium 138 1 species 522485 0 Campylobacter lanienae 545 0 species 75658 1 129 Campylobacter helveticus 0 28898 species 1 0 1 species 374106 Campylobacter cuniculorum 329 1 species 197 0 Campylobacter jejuni 4041 Campylobacter volucris 201 0 species 1031542 1 2593542 no rank 4 0 693 species 1500960 1 0 Campylobacter sp. RM16704 237 0 1660076 species 1 150 Campylobacter sp. RM12175 species 1660074 1 0 Campylobacter sp. RM8964 181 1660073 species 1 0 125 Campylobacter sp. RM6137 456 Campylobacter pinnipediorum 1965231 species 1 0 Campylobacter peloridis 264 0 species 488546 1 2573 0 2321108 no rank 5 0 genus 2321187 1 766 766 Arcobacter sp. LPB0137 1850254 species 1 0 0 2321207 no rank 1 562 0 1 species 944547 Arcobacter sp. L 562 3 1245 Arcobacter 3 28196 genus 1 0 859 Arcobacter butzleri 0 1 28197 species 0 28199 species 1 383 Arcobacter nitrofigilis 16 2146 Sulfurospirillum 57665 genus 9 0 1 375 Sulfurospirillum halorespirans 0 1 194424 species 65553 species 1 0 255 Sulfurospirillum deleyianum 0 species 44674 1 Sulfurospirillum barnesii 227 1 species 66821 0 Sulfurospirillum multivorans 247 0 no rank 2618290 3 844 Sulfurospirillum sp. UCH001 244 0 species 1581011 1 273 Sulfurospirillum sp. SL2-1 0 1 1986224 species 327 Sulfurospirillum sp. JPD-1 0 220622 species 1 182 Sulfurospirillum cavolei 366522 species 1 0 family 2771472 5 0 1470 942 Sulfurovum 1 1 0 3 265570 genus Sulfurovum lithotrophicum 466 species 206403 1 0 0 no rank 2646778 1 475 0 species 387093 1 Sulfurovum sp. NBC37-1 475 1 Nitratifractor 528 genus 269260 2 0 1 527 Nitratifractor salsuginis 1 269261 species 0 4 235899 order 0 819 296 2795691 family 2 0 0 1 genus 269258 2 Nitratiruptor 296 3 0 no rank 2624044 1 293 1 387092 species 0 293 Nitratiruptor sp. SB155-2 0 224467 family 2 523 0 1 genus 191291 2 Nautilia 523 5 0 244787 species 1 518 Nautilia profundicola 1 0 538 28211 class 189334 Alphaproteobacteria 609 344 order 2800059 2 0 0 2 family 2800061 344 2 344 Maricaulis 74317 genus 2 0 1 0 74318 species 1 342 Maricaulis maris order 1921002 4 0 456 158 44746 family 1 0 204454 no rank 1 0 158 0 species 86106 1 endosymbiont of Acanthamoeba sp. UWC8 158 7 Caedimonadaceae 115 family 2100208 2 0 1 108 0 1509243 genus 1 Candidatus Nucleicultrix amoebiphila 108 species 1509244 1 0 1 1777752 family 0 183 1 genus 1521255 0 183 0 1 species 91604 Candidatus Paracaedibacter acanthamoebae 183 Rhodobacterales 32861 189 0 1 order 204455 82 81 31989 family 1 0 591 32672 Rhodobacteraceae 0 genus 1759396 1 310 310 0 2622455 no rank 1 Marivivens sp. JLT3646 310 species 1920883 1 0 752 58840 no rank 2 0 0 1 species 2033435 Rhodobacteraceae bacterium QY30 403 349 Rhodobacteraceae bacterium 0 1904441 species 1 578 0 74032 genus 1 0 1 species 74033 Antarctobacter heliothermus 578 302485 genus 5 0 1 62 3697 Phaeobacter 1140 Phaeobacter piscinae 1580596 species 1 0 Phaeobacter porticola 304 1 species 1844006 0 Phaeobacter inhibens 1200 0 species 221822 1 Phaeobacter gallaeciensis 991 0 species 60890 1 0 genus 1579315 1 193 species 1579316 1 0 Halocynthiibacter arcticus 193 436357 genus 1 0 1 Thalassococcus 0 1 285107 genus 2 389 Thioclava 3 0 1 species 1915078 Thioclava nitratireducens 386 413 1 genus 159345 0 0 1 species 159346 Roseibacterium elongatum 413 1649279 genus 1 0 618 0 1 379347 species 618 Ruegeria mobilis 246 0 1 genus 1284657 246 Planktomarina temperata 1284658 species 1 0 721 53945 genus 3 0 Octadecabacter temperatus 249 0 species 1458307 1 1 species 1217908 0 Octadecabacter antarcticus 243 1 species 53946 0 Octadecabacter arcticus 229 1 0 2 360528 genus 727 Pelagibaca 1 726 Pelagibaca abyssi 0 1 1250539 species 1559 Celeribacter 5 0 1 875170 genus 5 0 1411902 species 1 466 Celeribacter manganoxidans species 1397108 1 0 Celeribacter marinus 181 0 1 1758178 species 372 Celeribacter ethanolicus 0 1 1208324 species 535 Celeribacter indicus 472 0 191028 genus 1 1 species 133924 0 Leisingera methylohalidivorans 472 4 34008 genus 1 0 20 1655 Rhodovulum Rhodovulum sulfidophilum 843 species 35806 1 0 2 2631432 no rank 0 792 Rhodovulum sp. MB263 369 1 species 308754 0 0 1564506 species 1 423 Rhodovulum sp. P5 595 Confluentimicrobium 1 1 0 2 1609958 genus 1 no rank 2643318 0 594 594 Confluentimicrobium sp. EMB200-NS6 1 1609966 species 0 2 358 Dinoroseobacter 309512 genus 2 0 1 Dinoroseobacter shibae 356 0 1 species 215813 505 0 1 genus 2211641 0 species 245188 1 Loktanella vestfoldensis 505 5 1060 genus 1 0 56 2964 Rhodobacter 823 196779 no rank 2 0 Rhodobacter sp. LPB0142 315 0 1 species 1850250 0 1 species 2033869 Rhodobacter sp. CZR27 508 1489 Rhodobacter sphaeroides 1063 species 1 0 Rhodobacter capsulatus 596 0 species 1061 1 1 0 9 genus 265 Paracoccus 4499 49 347 1 no rank 246570 0 Paracoccus sp. BM15 347 species 1529068 1 0 675 Paracoccus zhejiangensis 1077935 species 1 0 0 1 34003 species 434 Paracoccus aminophilus 517 Paracoccus aminovorans 0 34004 species 1 1 species 147645 0 Paracoccus yeei 734 Paracoccus denitrificans 762 species 266 1 0 Paracoccus sp. CBA4604 458 0 species 2065379 1 Paracoccus contaminans 523 species 1945662 1 0 2 227873 genus 1 0 6 864 Pannonibacter Pannonibacter phragmitetus 858 species 121719 1 0 1 0 3 97050 genus 1013 Ruegeria 2 1 89184 species 0 525 Ruegeria pomeroyi 0 1 no rank 2625375 486 1 292414 species 0 486 Ruegeria sp. TM1040 358 1 119541 genus 0 Rhodobaca barguzinensis 358 species 441209 1 0 2 263377 genus 0 1281 2640570 no rank 1 0 716 0 1792508 species 1 716 Yangia sp. CCB-MM3 Thiobacimonas profunda 565 species 1229727 1 0 0 1 genus 92944 3 Ketogulonicigenium 686 19 Ketogulonicigenium vulgare 329 1 species 92945 0 1 92947 species 0 338 Ketogulonicigenium robustum 926 Sulfitobacter 4 0 1 60136 genus 3 1 no rank 196795 0 386 0 1917485 species 1 386 Sulfitobacter sp. AM1-D1 536 Sulfitobacter pseudonitzschiae 0 1402135 species 1 Labrenzia 2020 27 1 0 4 genus 478070 1 187304 species 0 655 Labrenzia aggregata 1338 2 no rank 2648686 0 0 species 2021862 1 Labrenzia sp. VG12 624 0 1 species 1674922 Labrenzia sp. CP4 714 479 1 genus 188905 0 0 no rank 2645469 1 479 479 Jannaschia sp. CCS1 290400 species 1 0 1 1097466 genus 0 600 600 Defluviimonas alba 1 1335048 species 0 375 0 1 299261 genus 1 species 299262 0 Tateyamaria omphalii 375 genus 58842 1 0 620 620 0 no rank 2624628 1 620 Sagittula sp. P11 2009329 species 1 0 3 2433 genus 1 0 3 584 Roseobacter 286 Roseobacter denitrificans 1 2434 species 0 Roseobacter litoralis 295 1 species 42443 0 367771 genus 2 0 1 10 589 Marinovum Marinovum algicola 579 1 species 42444 0 1 429 Roseovarius 74030 genus 2 0 1 Roseovarius mucosus 428 0 1 species 215743 Loktanella 5 0 genus 245186 1 7 54526 order 0 685 family 1655514 6 0 1 1 Pelagibacteraceae 483 1 0 3 genus 198251 Candidatus Pelagibacter 258 1 0 1 no rank 2647897 140 140 Candidatus Pelagibacter sp. IMCC9063 0 1002672 species 1 Candidatus Pelagibacter ubique 117 0 1 species 198252 224 0 2 1655516 no rank alpha proteobacterium HIMB5 117 0 1 species 859653 alpha proteobacterium HIMB59 107 0 species 744985 1 202 0 2045213 genus 1 Candidatus Fonsibacter ubiquis 202 0 1 species 1925548 0 1 356 order 207 84121 Rhizobiales 836 17 772 family 0 2789 genus 773 17 0 1 29 Bartonella 2789 704 Bartonella apis 1 1686310 species 0 110 Bartonella grahamii 1 33045 species 0 739 6 2645622 no rank 0 0 1 species 515256 Bartonella sp. 1-1C 80 188 Bartonella sp. WD16.2 0 1 1933904 species Bartonella sp. JB63 168 species 1933907 1 0 0 1933912 species 1 59 Bartonella sp. Raccoon60 0 1 1933910 species 76 Bartonella sp. A1379B 168 Bartonella sp. JB15 0 1933906 species 1 38323 species 1 0 111 Bartonella henselae 198 Bartonella quintana 1 803 species 0 0 85701 species 1 130 Bartonella tribocorum 774 species 1 0 159 Bartonella bacilliformis Bartonella ancashensis 137 species 1318743 1 0 388640 species 1 0 163 Bartonella australis 223 Bartonella clarridgeiae 0 56426 species 1 Bartonella vinsonii 86 species 33047 1 0 1 0 53 family 82115 Rhizobiaceae 30015 279 1 0 6 genus 34019 Liberibacter 437 3 0 species 556287 1 Candidatus Liberibacter solanacearum 44 Liberibacter crescens 108 species 1273132 1 0 59 Candidatus Liberibacter asiaticus 0 34021 species 1 1 species 34020 0 Candidatus Liberibacter africanus 133 Candidatus Liberibacter americanus 90 0 1 species 309868 1 0 2 genus 323620 Shinella 999 41 958 0 1 no rank 2643062 0 species 879274 1 Shinella sp. HZN7 958 227290 no rank 34 0 21834 Agrobacterium 5622 71 1 0 7 genus 357 655 Agrobacterium rhizogenes 1 359 species 0 3093 0 1183400 species group 2 species 1176649 1 0 Agrobacterium fabrum 732 1 358 species 0 2361 Agrobacterium tumefaciens 704 Agrobacterium vitis 0 373 species 1 1099 2632611 no rank 2 0 618 Agrobacterium sp. H13-3 861208 species 1 0 species 1842536 1 0 Agrobacterium sp. RAC06 481 1 0 25 379 genus 14990 Rhizobium 1098 Rhizobium tropici 674 species 398 1 0 6852 19 2613769 no rank 0 Rhizobium sp. Kim5 335 1 species 2020311 0 0 species 1914541 1 Rhizobium sp. Y9 900 392 Rhizobium sp. NXC14 1981173 species 1 0 888 Rhizobium sp. IRBG74 0 424182 species 1 79 Rhizobium sp. N1314 0 1 1703961 species 850 Rhizobium sp. ACO-34A 1571470 species 1 0 0 1869170 species 1 622 Rhizobium sp. S41 Rhizobium sp. N621 1 0 species 1703964 1 0 species 2020313 1 Rhizobium sp. TAL182 72 Rhizobium sp. 10195 540 1 species 2028343 0 Rhizobium sp. N731 79 1 species 1703966 0 1 species 1703969 0 Rhizobium sp. N324 506 0 1 species 2020312 Rhizobium sp. CIAT894 433 1703962 species 1 0 1 Rhizobium sp. N1341 1 species 1125847 0 Rhizobium sp. NT-26 359 0 species 1301032 1 Rhizobium sp. IE4771 292 0 species 1703960 1 Rhizobium sp. N113 2 Rhizobium sp. NXC24 500 species 2048897 1 0 0 1 1703965 species 1 Rhizobium sp. N6212 744 Rhizobium gallicum 56730 species 1 0 Rhizobium etli 1437 species 29449 1 0 0 species 384 1 Rhizobium leguminosarum 3125 1060 Rhizobium phaseoli 0 1 396 species 0 1 1525371 genus 2 1222 Neorhizobium 16 Neorhizobium galegae 1206 0 species 399 1 6466 0 no rank 227292 10 92 Sinorhizobium 5113 7 genus 28105 1 0 110321 species 1 0 426 Sinorhizobium medicae 1254 663276 species group 1 0 1254 Sinorhizobium fredii 0 380 species 1 no rank 2613772 2 0 1240 0 1 species 1842534 Sinorhizobium sp. RAC02 715 Sinorhizobium sp. CCBAU 05631 525 species 794846 1 0 1 species 194963 0 Sinorhizobium americanum 670 1 382 species 0 1431 Sinorhizobium meliloti 1 0 3 106591 genus 1353 Ensifer 16 0 106592 species 1 810 Ensifer adhaerens 527 Ensifer sojae 0 1 716925 species family 69277 20 0 1 74 Phyllobacteriaceae 8206 0 1 genus 449972 2 Chelativorans 813 2 0 2643807 no rank 1 811 1 266779 species 0 811 Chelativorans sp. BNC1 6 552 Nitratireductor 2 245876 genus 1 0 Nitratireductor basaltis 546 0 species 472175 1 2 Phyllobacterium 643 2 genus 28100 1 0 641 Phyllobacterium zundukense 1 1867719 species 0 14 831 Aminobacter 2 31988 genus 1 0 0 83263 species 1 817 Aminobacter aminovorans Hoeflea 365 4 0 1 genus 274591 2 361 0 1 no rank 2614931 0 1 1620421 species 361 Hoeflea sp. IMCC20628 1 0 9 genus 68287 Mesorhizobium 4928 145 Mesorhizobium australicum 526 species 536018 1 0 1 species 39645 0 Mesorhizobium ciceri 848 486 Mesorhizobium opportunistum 0 1 593909 species 0 1 325217 no rank 607 Mesorhizobium sp. WSM1497 607 species 278153 1 0 0 1 species 71433 Mesorhizobium amorphae 659 Mesorhizobium sp. B7 355 1 species 1670800 0 715 Mesorhizobium loti 381 species 1 0 587 Mesorhizobium japonicum 0 2066070 species 1 0 1 family 31993 6 Methylocystaceae 1144 29 6 Methylocystis 543 3 genus 133 1 0 233 Methylocystis bryophila 1 655015 species 0 2625913 no rank 1 0 304 0 1 species 187303 Methylocystis sp. SC2 304 Methylosinus 572 1 0 1 genus 425 2 0 species 426 1 Methylosinus trichosporium 571 Xanthobacteraceae 2022 25 1 0 7 family 335928 Starkeya 535 26 0 1 genus 152053 2 509 Starkeya novella 921 species 1 0 1 0 2 genus 279 Xanthobacter 707 32 675 Xanthobacter autotrophicus 280 species 1 0 9 Azorhizobium 755 2 genus 6 1 0 7 species 1 0 746 Azorhizobium caulinodans 771 Beijerinckiaceae 5 0 1 45404 family 4 genus 120652 2 0 1 3 Methylocella 395 1 species 199596 0 Methylocella silvestris 392 0 1 genus 532 371 Beijerinckia indica 371 1 species 533 0 1 0 15 119045 family 8400 Methylobacteriaceae 48 3040 genus 2282523 3 0 885 Methylobacterium populi 223967 species 1 0 Methylobacterium extorquens 1623 species 408 1 0 Methylobacterium zatmanii 532 0 1 species 29429 1 0 9 407 genus 4709 Methylobacterium 314 0 1 species 114616 Methylobacterium nodulans 678 Methylobacterium oryzae 483 species 334852 1 0 0 270351 species 1 557 Methylobacterium aquaticum 0 1 species 418223 Methylobacterium phyllosphaerae 474 1594 0 3 2615210 no rank 473 Methylobacterium sp. AMS5 925818 species 1 0 Methylobacterium sp. C1 500 0 1 species 1479019 0 1 species 426117 Methylobacterium sp. 4-46 621 609 Methylobacterium radiotolerans 0 1 31998 species 8 603 Microvirga 186650 genus 2 0 1 595 Microvirga ossetica 0 1 1882682 species 297 Bradyrhizobiaceae 14205 family 41294 26 0 1 2638 Bosea 50 1 0 5 85413 genus 736 Bosea vaviloviae 1 1526658 species 0 0 2653178 no rank 3 1852 0 1 species 2015316 Bosea sp. AS-1 663 1842539 species 1 0 536 Bosea sp. RAC05 Bosea sp. PAMC 26642 653 0 species 1792307 1 328 Variibacter 5 1 0 2 1649510 genus species 1333996 1 0 Variibacter gotjawalensis 323 6795 Bradyrhizobium 223 0 1 374 genus 11 Bradyrhizobium diazoefficiens 952 0 1 species 1355477 0 6 2631580 no rank 3559 0 1 2057741 species 577 Bradyrhizobium sp. SK17 0 1 114615 species 607 Bradyrhizobium sp. ORS 278 0 1223566 species 1 560 Bradyrhizobium sp. CCGE-LA001 0 376 species 1 571 Bradyrhizobium sp. 1 species 115808 0 Bradyrhizobium sp. ORS 285 545 0 1 species 288000 Bradyrhizobium sp. BTAi1 699 Bradyrhizobium icense 462 species 1274631 1 0 Bradyrhizobium japonicum 980 0 1 species 375 619 Bradyrhizobium oligotrophicum 0 1 44255 species genus 911 3 0 1 4 Nitrobacter 521 Nitrobacter hamburgensis 297 species 912 1 0 0 1 913 species 220 Nitrobacter winogradskyi 7 Oligotropha 287 genus 40136 2 0 1 0 1 40137 species 280 Oligotropha carboxidovorans 3339 Rhodopseudomonas 51 0 1 1073 genus 2 1076 species 1 0 3288 Rhodopseudomonas palustris 1460 0 6 no rank 119042 657 Hartmannibacter 8 0 1 1572860 genus 2 Hartmannibacter diazotrophicus 649 species 1482074 1 0 419 Pseudorhodoplanes 19 1 0 2 1734920 genus 400 Pseudorhodoplanes sinuspersici 1235591 species 1 0 Methyloceanibacter 384 1 0 1 genus 1484898 2 1384459 species 1 0 383 Methyloceanibacter caenitepidi 1 0 3 family 119043 Rhodobiaceae 338 2 31 336 Parvibaculum 2 256616 genus 1 0 0 species 256618 1 Parvibaculum lavamentivorans 305 1 0 7 255475 family 2656 Aurantimonadaceae 15 1 0 2 414371 genus 543 Aureimonas 7 536 0 1 no rank 2615206 1349819 species 1 0 536 Aureimonas sp. AU20 1 0 4 genus 293088 Martelella 2098 42 1 species 1486262 0 Martelella endophytica 622 792 0 2629616 no rank 1 792 Martelella sp. AD-3 686597 species 1 0 Martelella mediterranea 642 1 species 293089 0 1078 Chelatococcaceae 32 1 0 4 2036754 family 3 genus 28209 1 0 19 Chelatococcus 1046 0 2638111 no rank 1 615 615 Chelatococcus sp. CO-6 0 1702325 species 1 412 Chelatococcus daeguensis 0 1 444444 species 36 Hyphomicrobiaceae 5641 family 45401 18 0 1 1 0 2 genus 1082930 Pelagibacterium 417 1 0 531813 species 1 416 Pelagibacterium halotolerans 12 Hyphomicrobium 1585 genus 81 4 0 1 593 Hyphomicrobium denitrificans 0 53399 species 1 457 2619925 no rank 1 0 Hyphomicrobium sp. MC1 457 species 717785 1 0 523 Hyphomicrobium nitrativorans 0 1427356 species 1 61 Devosia 1734 4 genus 46913 1 0 0 196773 no rank 3 1673 Devosia sp. A16 643 species 1736675 1 0 Devosia sp. H5989 647 1 species 1643450 0 0 2083786 species 1 383 Devosia sp. I507 1 0 2 1068 genus 511 Rhodomicrobium 11 Rhodomicrobium vannielii 500 1 species 1069 0 26 Blastochloris 521 genus 59282 2 0 1 0 species 1079 1 Blastochloris viridis 495 31 Rhodoplanes 636 genus 29407 2 0 1 0 2619116 no rank 1 605 species 674703 1 0 Rhodoplanes sp. Z2-YC6860 605 0 1 genus 119044 201 0 species 1608628 1 Candidatus Filomicrobium marinum 201 38 4560 Brucellaceae 20 118882 family 1 0 Brucella 2095 687 0 1 genus 234 14 114 Brucella vulpis 981386 species 1 0 78 Brucella abortus 1 235 species 0 0 120577 species 1 138 Brucella ceti 56 Brucella suis 29461 species 1 0 1 29459 species 0 128 Brucella melitensis Brucella canis 118 0 species 36855 1 0 1 236 species 28 Brucella ovis 44 Brucella microti 0 444163 species 1 4 no rank 2632610 0 580 0 species 1149952 1 Brucella sp. 09RB8471 141 Brucella sp. 141012304 258 species 1885919 1 0 157 Brucella sp. 09RB8910 0 1844051 species 1 Brucella sp. 2002734562 24 0 1 species 1891098 0 1 species 120576 Brucella pinnipedialis 124 5 genus 528 1 0 32 Ochrobactrum 2427 0 1 species 419475 Ochrobactrum pseudogrignonense 576 0 1 271865 species 566 Ochrobactrum sp. A44 0 571256 species 1 510 Ochrobactrum pituitosum 0 1 529 species 743 Ochrobactrum anthropi 1 0 82 order 204457 Sphingomonadales 28125 193 family 41297 59 0 1 315 Sphingomonadaceae 21995 6523 Sphingobium 111 0 1 165695 genus 15 Sphingobium baderi 403 0 1 species 1332080 Sphingobium hydrophobicum 494 species 1673076 1 0 Sphingobium indicum 495 1 species 332055 0 Sphingobium cloacae 411 1 species 120107 0 species 332056 1 0 Sphingobium japonicum 459 0 76947 species 1 369 Sphingobium herbicidovorans 2825 6 no rank 2611147 0 484429 species 1 0 611 Sphingobium sp. YBL2 432 Sphingobium sp. RAC03 1843368 species 1 0 1 species 1315974 0 Sphingobium sp. TKS 544 377 Sphingobium sp. EP60837 0 1855519 species 1 444 Sphingobium sp. MI1205 407020 species 1 0 Sphingobium sp. SYK-6 417 0 1 species 627192 0 1 species 13690 Sphingobium yanoikuyae 516 Sphingobium chlorophenolicum 440 species 46429 1 0 1 0 2 150203 genus 450 Blastomonas 3 1 2626550 no rank 0 447 447 Blastomonas sp. RAC04 0 1 1842535 species 1 genus 2709685 0 320 Sphingorhabdus flavimaris 320 0 1 species 266812 Rhizorhabdus 429 3 1 0 2 genus 1649486 0 1850238 species 1 426 Rhizorhabdus dicambivorans 380 0 1 genus 2685927 380 Sphingomonas sp. JJ-A5 0 1921510 species 1 13 1987 Novosphingobium 5 165696 genus 1 0 2644732 no rank 1 0 446 Novosphingobium sp. PP1Y 446 0 1 species 702113 Novosphingobium aromaticivorans 454 1 species 48935 0 Novosphingobium pentaromativorans 605 0 1 species 205844 Novosphingobium resinovorum 469 0 1 species 158500 18 Sphingorhabdus 775 3 genus 1434046 1 0 2614947 no rank 2 0 757 1 1806885 species 0 438 Sphingorhabdus sp. M41 1 species 2077182 0 Sphingorhabdus sp. YGSMI21 319 Sphingopyxis 3273 73 1 0 10 genus 165697 0 1 species 267128 Sphingopyxis granuli 432 Sphingopyxis alaskensis 321 0 species 117207 1 1268 no rank 2614943 4 0 0 1 292913 species 341 Sphingopyxis sp. 113P3 0 species 1913578 1 Sphingopyxis sp. LPB0140 166 Sphingopyxis sp. QXT-31 399 0 1 species 1357916 0 species 1866325 1 Sphingopyxis sp. MG 362 0 1 33050 species 647 Sphingopyxis macrogoltabida 0 33052 species 1 199 Sphingopyxis terrae Sphingopyxis fribergensis 333 0 1 species 1515612 18 387 Citromicrobium 72173 genus 2 0 1 0 no rank 2630544 1 369 Citromicrobium sp. JL477 369 1 species 1634516 0 1 0 2 541 genus 480 Zymomonas 6 Zymomonas mobilis 474 0 species 542 1 159 Sphingomonas 6676 genus 13687 15 0 1 0 1 species 160791 2 Sphingomonas wittichii 1057 464 1 strain 1283312 0 Sphingomonas sp. DC-6 593 450 Sphingomonas hengshuiensis 1 1609977 species 0 0 6 no rank 196159 2690 470 Sphingomonas sp. NIC1 0 1961362 species 1 0 1 1938607 species 409 Sphingomonas sp. LM7 1030157 species 1 0 386 Sphingomonas sp. KC8 318 Sphingomonas sp. Cra20 1327635 species 1 0 516 Sphingomonas sp. LK11 0 1 1390395 species 0 745310 species 1 591 Sphingomonas sp. MM-1 0 1 species 152682 Sphingomonas melonis 471 0 species 397260 1 Sphingomonas sanxanigenens 530 472 Sphingomonas taxi 1 1549858 species 0 Sphingomonas panacis 406 0 1 species 1560345 441 Sphingomonas koreensis 0 93064 species 1 22 335929 family 1 0 104 5937 Erythrobacteraceae 0 genus 1855416 2 566 252 Erythrobacter flavus 0 1 192812 species Erythrobacter seohaensis 314 1 species 266951 0 0 2 genus 2800686 643 1 species 692370 0 Altererythrobacter dongtanensis 306 1 1982042 species 0 337 Altererythrobacter mangrovi 2 2800681 genus 0 561 1 species 502682 0 Erythrobacter gangjinensis 389 Erythrobacter atlanticus 172 1 species 1648404 0 419 0 1 2800682 genus 0 1 species 645517 Altererythrobacter namhicola 419 1 0 3 genus 1295327 Croceicoccus 650 20 species 1348774 1 0 Croceicoccus naphthovorans 249 381 Croceicoccus marinus 1 450378 species 0 0 6 2800788 no rank 1506 1 0 3 genus 1041 Erythrobacter 887 45 Porphyrobacter neustonensis 345 1 species 1112 0 Erythrobacter litoralis 497 species 39960 1 0 3 1111 genus 1 0 17 619 Porphyrobacter 2 no rank 2683265 0 602 Porphyrobacter HT-58-2 323 species 2023229 1 0 0 1 species 1896196 Porphyrobacter sp. LM 6 279 352 1 genus 2800685 0 352 Altererythrobacter marensis 0 543877 species 1 Altererythrobacter 1136 40 0 1 genus 361177 4 187 Altererythrobacter ishigakiensis 1 476157 species 0 Altererythrobacter epoxidivorans 384 0 species 361183 1 Altererythrobacter atlanticus 525 0 1 species 1267766 1970 7 no rank 82117 0 14 557 Polymorphum 2 991903 genus 1 0 543 Polymorphum gilvum 0 1 991904 species 24 601 Phreatobacter 1632780 genus 2 0 1 Phreatobacter sp. S-12 577 species 1868589 1 0 321 clade 62654 1 0 321 1 767891 genus 0 767892 species 1 0 321 Candidatus Puniceispirillum marinum 2 genus 213485 1 0 8 Micavibrio 491 Micavibrio aeruginosavorus 483 0 1 species 349221 19 504 Magnetococcales 3 1191478 order 1 0 485 0 1191479 family 2 0 1 162171 genus 2 485 Magnetococcus 1 0 1 1124597 species 484 Magnetococcus marinus 0 1 order 204441 64 Rhodospirillales 27463 268 158 12202 Acetobacteraceae 433 family 33 0 1 364409 genus 2 0 1 3 922 Granulibacter 1 species 364410 0 Granulibacter bethesdensis 919 genus 91914 2 0 1 2 Asaia 252 1 91915 species 0 250 Asaia bogorensis 30 Acidiphilium 899 3 genus 522 1 0 431 Acidiphilium cryptum 524 species 1 0 62140 species 1 0 438 Acidiphilium multivorum 516 1 153497 genus 0 1 species 153496 0 Kozakia baliensis 516 1 1602345 genus 0 370 0 1510841 species 1 370 Parasaccharibacter apium 3 125216 genus 1 0 14 1290 Roseomonas 0 no rank 2617492 1 635 0 1 2018065 species 635 Roseomonas sp. FDAARGOS_362 Roseomonas gilardii 641 0 1 species 257708 35 Komagataeibacter 1861 genus 1434011 5 0 1 0 1177712 species 1 394 Komagataeibacter medellinensis 0 1 species 33995 Komagataeibacter europaeus 216 333 Komagataeibacter nataicola 0 1 265960 species 883 Komagataeibacter xylinus 1 28448 species 0 2 genus 89583 1 0 4 Gluconacetobacter 478 Gluconacetobacter diazotrophicus 474 1 species 33996 0 1519 Gluconobacter 3 1 0 3 441 genus 376 Gluconobacter albidus 0 318683 species 1 1140 Gluconobacter oxydans 0 442 species 1 2 genus 320496 1 0 1 Neoasaia 359 Neoasaia chiangmaiensis 358 species 320497 1 0 0 1 genus 434 8 Acetobacter 3578 65 Acetobacter oryzifermentans 325 0 species 1633874 1 Acetobacter pasteurianus 1208 0 species 438 1 0 species 446692 1 Acetobacter senegalensis 424 0 104102 species 1 408 Acetobacter tropicalis 1 151157 subgenus 0 518 Acetobacter aceti 518 1 species 435 0 Acetobacter persici 329 0 1 species 1076596 species 65959 1 0 Acetobacter pomorum 301 0 1 41295 family 30 14993 Rhodospirillaceae 217 2 genus 1612157 1 0 3 Pararhodospirillum 328 0 1084 species 1 325 Pararhodospirillum photometricum 1 0 2 1182780 genus 388 Magnetospira 3 no rank 2685734 1 0 385 1288970 species 1 0 385 Magnetospira sp. QH-2 5 genus 191 1 0 194 Azospirillum 5210 0 1 1226968 species 545 Azospirillum humicireducens species 192 1 0 Azospirillum brasilense 1500 Azospirillum thiophilum 1179 0 species 528244 1 1792 Azospirillum lipoferum 1 193 species 0 1 0 3 genus 168934 Thalassospira 1165 8 0 1 species 2048283 Thalassospira sp. CSC3H3 545 Thalassospira xiamenensis 612 1 species 220697 0 1 0 3 1081 genus 1217 Rhodospirillum 9 577 Rhodospirillum rubrum 1085 species 1 0 1 34018 species 0 631 Rhodospirillum centenum 0 1 1263978 genus 285 Candidatus Endolissoclinum faulkneri 285 1 species 1263979 0 1 0 2 1543704 genus 883 Niveispirillum 31 1 species 1612173 0 Niveispirillum cyanobacteriorum 852 1 0 2 171436 genus 804 Tistrella 15 1 species 171437 0 Tistrella mobilis 789 1 178 Haematospirillum 2 1804663 genus 1 0 0 1 1549855 species 177 Haematospirillum jordaniae 5 13134 genus 1 0 54 3301 Magnetospirillum 720 Magnetospirillum magneticum 84159 species 1 0 1471 0 2 2617991 no rank Magnetospirillum sp. XM-1 769 0 species 1663591 1 0 species 1639348 1 Magnetospirillum sp. ME-1 702 species 55518 1 0 Magnetospirillum gryphiswaldense 1056 2 genus 1543705 1 0 5 Nitrospirillum 1017 0 species 28077 1 Nitrospirillum amazonense 1012 204458 order 20 0 1 49 7501 Caulobacterales 7452 Caulobacteraceae 123 0 1 76892 family 19 81440 no rank 1 0 272 1 1759059 species 0 272 Caulobacteraceae bacterium OTSz_A_272 8 Asticcacaulis 438 2 genus 76890 1 0 Asticcacaulis excentricus 430 species 78587 1 0 0 1 genus 41275 7 Brevundimonas 2685 66 1 41276 species 0 358 Brevundimonas vesicularis 0 1 species 74313 Brevundimonas subvibrioides 582 1204 3 no rank 2622653 0 Brevundimonas sp. GW460-12-10-14-LB2 325 0 1 species 1827469 0 1 species 1938605 Brevundimonas sp. LM2 389 species 1532555 1 0 Brevundimonas sp. DS20 490 475 Brevundimonas naejangsanensis 1 588932 species 0 6 Phenylobacterium 666 2 genus 20 1 0 660 Phenylobacterium zucineum 1 284016 species 0 75 genus 6 0 1 38 3268 Caulobacter 0 species 69395 1 Caulobacter henricii 460 0 2648921 no rank 1 635 635 Caulobacter sp. K31 0 366602 species 1 975 Caulobacter vibrioides 0 155892 species 1 557 Caulobacter segnis 88688 species 1 0 1 species 69666 0 Caulobacter mirabilis 603 903 0 5 2800060 order 0 1 69657 family 5 903 Hyphomonadaceae 5 700 Hyphomonas 9 1 0 3 85 genus 341 0 1 no rank 2630699 0 1 species 1906738 Hyphomonas sp. Mor2 341 Hyphomonas neptunium 350 0 species 81032 1 198 2723 genus 1 0 198 Hirschia baltica 0 1 2724 species order 255473 3 0 117 Parvularculaceae 117 1 1 0 3 family 255474 1 116 Parvularcula 208215 genus 2 0 1 0 1 208216 species 115 Parvularcula bermudensis Rickettsiales 3675 4 1 0 51 order 766 0 1 775 family 27 1839 Rickettsiaceae 5 1695 0 24 tribe 33988 1577 Rickettsia 152 0 1 780 genus 23 0 2 species group 1129742 258 788 species 1 0 82 Rickettsia canadensis 1 species 33990 0 Rickettsia bellii 176 802 0 species group 114277 17 1 783 species 0 28 Rickettsia rickettsii 192 Rickettsia felis 0 1 42862 species 0 1 33989 species 87 Rickettsia amblyommatis 0 1 781 species 10 Rickettsia conorii 35794 species 1 0 10 Rickettsia slovaca Rickettsia rhipicephali 44 1 species 33992 0 species 47589 1 0 Rickettsia peacockii 34 0 1 786 species 86 Rickettsia akari 0 species 35791 1 Rickettsia massiliae 19 1 species 35788 0 Rickettsia africae 43 Rickettsia heilongjiangensis 12 species 226665 1 0 Rickettsia montanensis 33 0 species 33991 1 12 Rickettsia parkeri 35792 species 1 0 species 35790 1 0 Rickettsia japonica 3 species 109232 1 0 Rickettsia monacensis 70 8 Rickettsia philipii 0 1105106 species 1 Rickettsia australis 111 0 1 species 787 258 0 2 114292 species group 0 1 species 785 Rickettsia typhi 144 114 Rickettsia prowazekii 0 782 species 1 1 114295 no rank 0 107 0 337479 species 1 107 Rickettsia endosymbiont of Bemisia tabaci 118 69474 genus 1 0 0 784 species 1 118 Orientia tsutsugamushi genus 2115980 2 0 1 2 Candidatus Phycorickettsia 139 2115978 species 1 0 137 Candidatus Phycorickettsia trachydisci 1328881 family 2 0 1 4 85 Candidatus Midichloriaceae 81 1 genus 411566 0 81 Candidatus Midichloria mitochondrii 0 234827 species 1 1699067 no rank 1 0 176 Rickettsiales bacterium Ac37b 176 0 1 species 1528098 family 942 20 0 1571 0 3 genus 768 170 Anaplasma marginale 54 0 species 770 1 87 0 species group 106179 1 Anaplasma phagocytophilum 87 1 species 948 0 769 species 1 0 29 Anaplasma centrale Neorickettsia 184 3 0 1 genus 33993 4 1 950 species 0 103 Neorickettsia risticii Neorickettsia sennetsu 26 0 1 species 951 52 Neorickettsia helminthoeca 33994 species 1 0 719 8 952 tribe 0 1 0 8 953 genus 719 Wolbachia 1 718 7 no rank 2640676 0 0 1 species 246273 Wolbachia endosymbiont of Cimex lectularius 43 0 100901 species 1 65 Wolbachia endosymbiont of Onchocerca ochengi 1 163164 species 0 96 Wolbachia endosymbiont of Drosophila melanogaster species 80849 1 0 Wolbachia endosymbiont of Brugia malayi 45 0 species 66084 1 Wolbachia sp. wRi 84 1 species 77038 0 Wolbachia endosymbiont of Drosophila simulans 321 0 77551 species 1 64 Wolbachia endosymbiont of Onchocerca volvulus 5 943 genus 0 498 1 106181 no rank 0 101 Ehrlichia sp. HF 101 0 1 species 391036 397 4 species group 106178 0 Ehrlichia chaffeensis 116 0 1 species 945 Ehrlichia muris 65 species 35795 1 0 0 1 779 species 100 Ehrlichia ruminantium 116 Ehrlichia canis 944 species 1 0 0 phylum 200930 8 1777 class 68337 8 0 1777 2 1777 Deferribacterales 8 191393 order 1 0 2 Deferribacteraceae 1775 family 191394 7 0 1 117999 genus 2 0 1 1 519 Denitrovibrio 0 118000 species 1 518 Denitrovibrio acetiphilus 0 1 genus 545865 380 477976 species 1 0 380 Calditerrivibrio nitroreducens 1 0 2 2351 genus 389 Flexistipes 1 Flexistipes sinusarabici 388 species 2352 1 0 0 53572 genus 1 485 Deferribacter desulfuricans 485 0 1 species 197162