members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4645 7396 2693456 29 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 2157 118864 0 277 superkingdom phylum 223 0 36510 28890 10 class 183980 645 0 10 order 645 2231 0 1 10 family 6 2232 645 Archaeoglobaceae 0 133 1 190818 0 Geoglobus 3 1 genus species 1 0 Geoglobus ahangari 78 113653 0 Geoglobus acetivorans 54 565033 species 1 54260 71 0 1 genus 1 species 54261 71 Ferroglobus placidus 0 435 2233 12 0 Archaeoglobus 5 1 genus 1 species 84156 155 Archaeoglobus profundus 0 1 species 2234 83 Archaeoglobus fulgidus 0 0 Archaeoglobus veneficus 96 58290 species 1 0 Archaeoglobus sulfaticallidus 1316941 89 species 1 0 3507 2283796 clade 21 clade 3 0 1803510 296 genus 1 3 Aciduliprofundum 0 5 379546 296 1 species 379547 163 Aciduliprofundum boonei 0 no rank 1 0 2633939 128 128 673860 0 Aciduliprofundum sp. MAR08-339 1 species 0 3211 183967 class 18 2301 6 1619 0 Thermoplasmatales 13 1 order family 3 0 471 90142 genus 1 3 0 Ferroplasma 4 74968 471 1 species 226 74969 Ferroplasma acidiphilum 0 species 1 0 Ferroplasma acidarmanus 97393 241 299 1747776 1 Cuniculiplasmataceae 0 3 1 family 0 Cuniculiplasma 298 8 1747777 genus 1 2 1673428 290 Cuniculiplasma divulgatum 0 1 species family 3 0 46659 312 Thermoplasma 0 312 4 2302 genus 1 3 1 species 2303 117 Thermoplasma acidophilum 0 50339 191 Thermoplasma volcanium 0 1 species 205 46630 0 2 family genus 1 2 0 Picrophilus 205 9 46631 Picrophilus torridus 0 82076 196 species 1 1 no rank 1919231 326 0 1 species 326 1054217 Thermoplasmatales archaeon BRNA1 0 1 no rank 239 1234666 0 0 methanogenic archaeon ISO4-H5 1495144 239 species 1 order 4 0 1353 1235850 369 2517203 0 1 family 0 1291539 369 genus 1 1 species 369 1291540 Candidatus Methanomethylophilus alvus 0 984 18 1577788 0 Methanomassiliicoccaceae 1 3 family 0 572 1080709 genus 1 1 species 1406512 572 Candidatus Methanomassiliicoccus intestinalis 0 1 genus 394 1607807 0 species 1 Candidatus Methanoplasma termitum 0 394 1577791 2290931 19398 0 109 clade 1 52 class 10 224756 7535 Methanomicrobia 0 4 2191 1627 Methanomicrobiales 0 1 18 order 108 88404 0 2 family genus 2 1 Methanocorpusculum 0 24 2192 108 Methanocorpusculum labreanum 0 83984 84 species 1 7 1 family 635 15 2194 Methanomicrobiaceae 0 78 45989 391 0 Methanoculleus 4 1 genus no rank 1 0 84 2619537 species 1 0 Methanoculleus sp. MAB1 86622 84 124 2198 Methanoculleus marisnigri 0 1 species Methanoculleus bourgensis 0 105 83986 species 1 1 2 genus 25 230355 229 0 Methanolacinia species 1 Methanolacinia petrolearia 0 54120 204 6 1 family 639 40 1198451 Methanoregulaceae 0 Methanosphaerula 0 212 2 475087 genus 1 2 0 Methanosphaerula palustris 475088 210 species 1 11 395331 387 Methanoregula 0 3 1 genus species 1 Methanoregula formicica 0 190 882104 species 1 0 Methanoregula boonei 186 358766 2 family 241 196137 0 0 Methanospirillum 241 2202 42 genus 2 1 Methanospirillum hungatei 0 2203 199 species 1 5464 11 94695 0 Methanosarcinales 28 1 order 3 family 477 143067 0 genus 1 3 0 Methanothrix 477 2222 19 0 Methanosaeta harundinacea 197 301375 species 1 2223 261 0 Methanothrix soehngenii 1 species 1 24 family 4976 9 2206 0 Methanosarcinaceae 1 genus 289 2321 0 289 2322 Methanohalobium evestigatum 0 1 species 1 2 genus 177 101191 12 0 Methanomethylovorans species 1 Methanomethylovorans hollandica 0 165 101192 0 Methanococcoides 367 2225 4 genus 3 1 0 Methanococcoides burtonii 186 29291 species 1 1 species 2226 177 Methanococcoides methylutens 0 1 genus 2220 120 0 species 1 0 Methanolobus psychrophilus 120 420950 0 424 2175 genus 2 1 species 225 2177 0 Methanohalophilus halophilus 0 Methanohalophilus mahii 2176 199 species 1 1 genus 271 196136 0 39669 271 Methanosalsum zhilinae 0 1 species 1 13 genus 2207 16 3319 Methanosarcina 0 1 species 168 2214 0 Methanosarcina acetivorans 1 species 2208 803 0 Methanosarcina barkeri species 1 Methanosarcina horonobensis 0 418008 194 Methanosarcina mazei 0 2209 430 species 1 species 1 0 Methanosarcina lacustris 170861 186 species 1 0 Methanosarcina siciliae 38027 403 0 2644672 730 no rank 4 species 1 0 Methanosarcina sp. WWM596 158 1434103 species 1 0 Methanosarcina sp. Kolksee 224 1434099 1434102 138 Methanosarcina sp. WH1 0 1 species Methanosarcina sp. MTP4 0 210 1434100 species 1 1 species 226 2215 Methanosarcina vacuolata 0 species 1 Methanosarcina thermophila 0 163 2210 Methanocellales 0 2 570264 434 order 1 5 0 Methanocellaceae 570265 2 432 family 4 1 genus 3 1 Methanocella 0 430 37 570266 1 species 1175444 197 0 Methanocella conradii species 1 Methanocella arvoryzae 0 1175445 196 1 57 class 11863 34 183963 Halobacteria 0 order 1 24 Halobacteriales 0 2235 19 2362 family 9 1 0 Halobacteriaceae 3 2236 910 1 2 genus 66 1 1656823 Halanaeroarchaeum 0 1 species 65 1604004 Halanaeroarchaeum sulfurireducens 0 0 332246 130 genus 1 130 413810 Halalkalicoccus jeotgali 0 1 species 0 Halobacterium 641 2239 3 genus 1 4 216 2668073 0 1 no rank species 1 0 Halobacterium sp. DL1 751944 216 1407499 246 0 Halobacterium hubeiense 1 species 1 species 2242 176 0 Halobacterium salinarum 0 1980514 70 genus 1 Halodesulfurarchaeum formicicum 0 1873524 70 species 1 1433 7 1963268 0 Haloarculaceae 14 1 family genus 1 0 203135 179 57705 179 0 Halomicrobium mukohataei 1 species 1 3 genus 63743 1 316 Natronomonas 0 species 1 0 Natronomonas moolapensis 183 416273 0 Natronomonas pharaonis 132 2257 species 1 1 3 genus 181 146825 3 Halorhabdus 0 species 1 0 Halorhabdus utahensis 75 146826 103 430914 0 Halorhabdus tiamatea 1 species 1 5 genus 575 3 2237 Haloarcula 0 Haloarcula hispanica 0 153 51589 species 1 127 2238 0 Haloarcula marismortui 1 species 1 species 125 1932004 Haloarcula taiwanensis 0 no rank 1 0 167 2624677 Haloarcula sp. CBA1115 0 1592728 167 species 1 genus 1 0 175 1073987 1 no rank 2648975 175 0 1932360 175 Halorientalis sp. IM1011 0 1 species 42 1644060 4733 Natrialbales 0 15 1 order 14 1 family 1644061 13 4691 Natrialbaceae 0 1 2 genus 8 63742 1881 0 Natrialba 0 Natrialba magadii 1873 13769 species 1 1 genus 233 29287 0 233 29288 Natronococcus occultus 0 1 species 0 387342 329 genus 1 species 1 Halopiger xanaduensis 0 387343 329 0 403 88723 genus 2 species 1 0 Natrinema pellirubrum 220 69525 no rank 1 0 183 2622230 Natrinema sp. J7-2 0 406552 183 species 1 2 genus 121871 781 0 588898 517 Haloterrigena daqingensis 0 1 species species 1 Haloterrigena turkmenica 0 264 62320 0 Halostagnicola 128 353799 1 genus 1 2 0 Halostagnicola larsenii 353800 127 species 1 0 2256 211 genus 1 species 1 Natronobacterium gregoryi 0 211 44930 1 genus 203193 508 0 species 1 Halobiforma lacisalsi 0 229731 508 1269201 204 0 1 genus 204 2621923 0 1 no rank 1 species 204 1333523 Salinarchaeum sp. Harcht-Bsk1 0 98 1644055 4734 Haloferacales 0 1 17 order 0 Haloferacaceae 3361 22 1644056 family 9 1 60846 1 175 0 Halogeometricum 1 2 genus 1 species 174 60847 0 Halogeometricum borinquense 1 2 genus 2168 293431 1 0 Haloquadratum 293091 2167 Haloquadratum walsbyi 0 1 species 4 1 genus 996 4 2251 0 Haloferax 1 species 397 2246 0 Haloferax volcanii 1 species 212 2252 0 Haloferax mediterranei 1 species 383 35746 Haloferax gibbonsii 0 family 6 0 1129 1963271 0 Salinigranum 401 2 1644057 genus 1 2 Salinigranum rubrum 0 399 755307 species 1 0 221 1209988 genus 1 1048396 221 Halopenitus persicus 0 1 species 1 3 genus 56688 1 507 Halorubrum 0 species 1 0 Halorubrum trapanicum 273 29284 233 2247 Halorubrum lacusprofundi 0 1 species 0 146 2678336 no rank 1 species 1 0 halophilic archaeon DL31 146 756883 40 class 183968 2551 0 order 1 40 Thermococcales 0 2 2258 2551 family 39 1 0 Thermococcaceae 2549 2259 1 genus 1 8 0 Pyrococcus 2260 13 681 2 no rank 2629106 262 0 1 species 342949 95 Pyrococcus sp. NA2 0 1 species 1183377 167 0 Pyrococcus sp. ST04 34 1008460 0 Pyrococcus yayanosii 1 species 1 species 86 29292 0 Pyrococcus abyssi 1609559 94 0 Pyrococcus kukulkanii 1 species 0 Pyrococcus horikoshii 95 53953 species 1 1 species 2261 97 0 Pyrococcus furiosus 1 genus 130 83867 0 971279 130 0 Palaeococcus pacificus 1 species 2263 27 1737 0 Thermococcus 29 1 genus 22 71998 0 Thermococcus pacificus 1 species 217 2627626 0 6 no rank 2008440 36 0 Thermococcus sp. 5-4 1 species Thermococcus sp. EXT12c 0 2016361 50 species 1 species 1 Thermococcus sp. AM4 0 246969 34 species 1 Thermococcus sp. 4557 0 1042877 36 Thermococcus sp. 2319x1 0 40 1674923 species 1 species 1 0 Thermococcus sp. P6 21 122420 species 1 Thermococcus kodakarensis 0 48 311400 2265 103 0 Thermococcus litoralis 1 species 1 species 30 163003 Thermococcus cleftensis 0 Thermococcus peptonophilus 0 53952 42 species 1 species 1 0 Thermococcus radiotolerans 32 187880 Thermococcus thioreducens 0 41 277988 species 1 1 species 110164 40 Thermococcus guaymasensis 0 582419 149 0 Thermococcus paralvinellae 1 species 1 species 45 195522 Thermococcus nautili 0 1 species 51 2264 Thermococcus celer 0 Thermococcus barossii 0 54077 25 species 1 71997 24 0 Thermococcus gorgonarius 1 species Thermococcus sibiricus 0 168 172049 species 1 267 72803 Thermococcus siculi 0 1 species 1 species 166 55802 Thermococcus barophilus 0 342948 35 0 Thermococcus onnurineus 1 species 64 54262 0 Thermococcus chitonophagus 1 species Thermococcus eurythermalis 0 1505907 35 species 1 30 1712654 Thermococcus piezophilus 0 1 species 0 Thermococcus profundus 34 49899 species 1 Thermococcus gammatolerans 0 42 187878 species 1 0 10409 2283794 clade 43 3 183925 5304 Methanobacteria 0 25 1 class Methanobacteriales 0 2158 4 5301 order 1 24 0 339 2178 family 1 0 339 2179 genus 1 species 1 Methanothermus fervidus 0 2180 339 1 22 family 3 2159 4958 Methanobacteriaceae 0 genus 8 1 0 Methanobacterium 1351 2160 31 species 1 0 Methanobacterium congolense 118062 145 193 2162 Methanobacterium formicicum 0 1 species species 1 0 Methanobacterium paludis 868131 243 species 1 0 Methanobacterium lacus 283 877455 0 2627676 305 no rank 2 1 species 146 1911685 Methanobacterium sp. MZ-A1 0 species 1 Methanobacterium sp. MB1 0 159 1379702 0 Methanobacterium subterraneum 59277 151 species 1 7 1 genus 2835 6 2172 Methanobrevibacter 0 0 Methanobrevibacter ruminantium 430 83816 species 1 538 2173 Methanobrevibacter smithii 0 1 species 0 780 2638681 no rank 2 species 1 Methanobrevibacter sp. AbM4 0 456 224719 species 1 0 Methanobrevibacter sp. YE315 324 1609968 1 species 230361 449 Methanobrevibacter millerae 0 species 1 0 Methanobrevibacter olleyae 294671 632 1 genus 502 2316 0 species 1 Methanosphaera stadtmanae 0 502 2317 267 6 145260 Methanothermobacter 0 1 5 genus 52 145262 Methanothermobacter thermautotrophicus 0 1 species species 1 0 Methanothermobacter wolfeii 145261 52 species 1 0 Methanothermobacter marburgensis 104 145263 no rank 1 0 2631116 53 866790 53 0 Methanothermobacter sp. CaT2 1 species class 1 18 Methanococci 0 2 183939 5105 Methanococcales 0 4 2182 5103 order 1 17 1 7 family 22 2183 2889 Methanococcaceae 0 genus 1 0 155862 303 1 species 303 155863 0 Methanothermococcus okinawensis genus 1 5 0 Methanococcus 2564 7 2184 1 species 436 42879 Methanococcus aeolicus 0 425 2188 Methanococcus voltae 0 1 species species 1 Methanococcus vannielii 0 312 2187 species 1 Methanococcus maripaludis 0 1384 39152 1 9 family 2210 196117 17 0 Methanocaldococcaceae 34 196118 1874 0 Methanocaldococcus 7 1 genus 2641196 322 0 1 no rank Methanocaldococcus sp. FS406-22 0 644281 322 species 1 species 1 0 Methanocaldococcus fervens 383 83171 Methanocaldococcus infernus 0 236 67760 species 1 1 species 2190 265 Methanocaldococcus jannaschii 0 1 species 1301915 348 Methanocaldococcus bathoardescens 0 0 Methanocaldococcus vulcanius 286 73913 species 1 1 genus 319 196119 0 species 1 Methanotorris igneus 0 319 2189 1783275 82306 0 53 clade 0 28889 3408 phylum 39 class 1 39 Thermoprotei 0 3408 9 183924 10 order 2266 611 0 4 family 233 114378 0 2268 233 0 4 genus 63 1550241 Thermofilum uzonense 0 1 species 0 Thermofilum adornatus 1365176 60 species 1 species 1 0 Thermofilum pendens 55 2269 55 1483572 0 Thermofilum carboxyditrophus 1 species 6 family 2267 378 0 2 genus 88 2270 0 1 species 2271 36 0 Thermoproteus tenax 1 species 184117 52 0 Thermoproteus uzoniensis 2 genus 164450 186 0 985052 87 0 Vulcanisaeta moutnovskia 1 species species 1 Vulcanisaeta distributa 0 164451 99 0 76886 75 genus 1 Caldivirga maquilingensis 0 76887 75 species 1 29 2276 0 1 genus 1 species 2277 29 0 Pyrobaculum islandicum 14 1 order 1 114380 764 0 Desulfurococcales 264 4 2307 Pyrodictiaceae 0 4 1 family genus 1 0 89 54251 89 54252 0 Pyrolobus fumarii 1 species 0 38 2308 genus 1 1 species 38 1273541 0 Pyrodictium delaneyi 1 genus 54247 133 0 Hyperthermus butylicus 0 133 54248 species 1 2272 499 0 9 family 0 2273 76 genus 2 species 1 0 Desulfurococcus amylolyticus 94694 59 2275 17 Desulfurococcus mucosus 0 1 species genus 1 3 Ignicoccus 0 54258 1 53 0 Ignicoccus hospitalis 16 160233 species 1 species 1 Ignicoccus islandicus 0 54259 36 genus 1 0 54253 20 20 54254 Thermosphaera aggregans 0 1 species genus 1 0 477695 42 Thermogladius calderae 0 1200300 42 species 1 0 308 2279 genus 2 2280 173 0 Staphylothermus marinus 1 species 1 species 135 84599 0 Staphylothermus hellenicus 0 2281 1671 order 11 11 1 family 1 118883 1671 0 Sulfolobaceae 708 3 2284 0 Sulfolobus 1 4 genus species 1 Sulfolobus islandicus 0 359 43080 species 1 0 Sulfolobus acidocaldarius 2285 158 0 188 2641160 no rank 1 species 1 0 Sulfolobus sp. A20 1891280 188 41980 139 0 2 genus 0 Metallosphaera cuprina 1006005 81 species 1 58 43687 0 Metallosphaera sedula 1 species Acidianus 0 223 12914 1 genus 2 1 1 species 222 563177 0 Acidianus hospitalis 0 358 69655 genus 1 Sulfolobus tokodaii 0 358 111955 species 1 genus 1 0 242 2100760 species 1 0 Sulfolobus solfataricus 242 2287 3 1 order 871006 1 353 0 Acidilobales 0 328 255472 family 1 1 genus 328 200414 0 species 1 0 Caldisphaera lagunensis 200415 328 1 family 24 871007 0 0 24 105850 genus 1 species 1 0 Acidilobus saccharovorans 24 242703 51967 51 0 1 phylum 0 498845 51 genus 1 0 Candidatus Korarchaeum cryptofilum 498846 51 species 1 phylum 13 0 78847 651137 3 class 1387 1643678 0 1033996 683 0 2 order 2 family 1033997 683 0 497726 1 683 0 Nitrososphaera 1 2 genus species 1 Nitrososphaera viennensis 0 682 1034015 1 order 704 1968909 0 0 1968910 704 family 1 0 498374 704 genus 1 704 2045011 Candidatus Nitrosocaldus islandicus 0 1 species 0 55958 651142 no rank 5 genus 1 3 Candidatus Nitrosotenuis 0 306 4 1825023 species 1 Candidatus Nitrosotenuis cloacae 0 167 1603555 1 species 135 1846278 Candidatus Nitrosotenuis sp. AQ6f 0 0 Candidatus Nitrosopelagicus 1593364 3 55652 genus 2 1 1 species 55649 1410606 Candidatus Nitrosopelagicus brevis 0 21502 2 31932 0 Nitrosopumilales 1 5 order 0 21500 338190 family 4 0 19132 1993653 genus 1 0 Candidatus Nitrosomarinus catalina 1898749 19132 species 1 genus 3 1 0 Nitrosopumilus 2368 338191 5 species 1 Candidatus Nitrosopumilus adriaticus 0 1580092 1105 1 species 1229909 1258 0 Candidatus Nitrosopumilus sediminis clade 1 0 1783276 48 phylum 1 0 48 1801631 1 genus 48 2490204 0 48 1920749 Candidatus Micrarchaeota archaeon Mia14 0 1 species Bacteria 0 2 36 2567196 superkingdom 4338 1 13966 1783257 0 89 clade 35 phylum 203682 6994 0 Phycisphaerae 0 905 3 666505 class 1 7 2483366 311 0 2 order 0 311 2483367 family 2 2 genus 2483368 311 0 1 species 158 1941349 Phycisphaerae bacterium ST-PulAB-D4 0 0 Phycisphaerae bacterium L21-RPul-D3 1940790 153 species 1 Phycisphaerales 0 4 666506 591 order 4 1 Phycisphaeraceae 0 666507 3 587 family 1 3 0 Phycisphaera 584 2 666508 genus 2 1 1 species 582 547188 0 Phycisphaera mikurensis 0 2019 2517206 class 3 Candidatus Brocadiales 0 1127829 7 2019 order 3 1 2 family 2012 1127830 0 2 1 genus 380738 2 2012 Candidatus Kuenenia 0 Candidatus Kuenenia stuttgartiensis 0 2010 174633 species 1 1 25 class 19 203683 4070 Planctomycetia 0 6 order 2691356 1122 0 Isosphaeraceae 0 1122 12 1763524 family 1 6 genus 1 0 417 1763521 species 1 0 Paludisphaera borealis 1387353 417 2 1 genus 5 127 321 Isosphaera 0 1 species 128 316 Isosphaera pallida 0 1 2 genus 372 5 466152 0 Singulisphaera 1 species 466153 367 Singulisphaera acidiphila 0 order 1 10 Planctomycetales 0 46 112 1615 Planctomycetaceae 0 32 126 1569 family 9 1 1 2 genus 288 2 1936111 0 Fuerstia species 1 Fuerstia marisgermanicae 0 1891926 286 1649490 3 274 Rubinisphaera 0 2 1 genus species 1 Rubinisphaera brasiliensis 0 119 271 0 183 1649480 genus 1 species 1 Planctopirus limnophila 0 120 183 1 3 genus 10 118 792 0 Planctomyces 2648843 782 0 2 no rank species 1 Planctomyces sp. SH-PL62 0 449 1636152 1 species 333 1632864 0 Planctomyces sp. SH-PL14 order 5 0 2691354 870 0 2691358 147 family 1 genus 1 0 1676125 147 species 1 Thermogutta terrifontis 0 147 1331910 2691357 723 0 4 family genus 1 2 Pirellula 0 123 1 388 1 species 125 387 0 Pirellula staleyi 1 2 genus 335 3 265488 0 Rhodopirellula Rhodopirellula baltica 0 332 265606 species 1 444 2691355 0 3 order family 1 3 Gemmataceae 0 3 1914233 444 0 Gemmata 9 113 441 genus 2 1 1 no rank 2622970 432 0 species 1 Gemmata sp. SH-PL17 0 432 1630693 0 204428 3297 phylum 24 3297 15 204429 Chlamydiia 0 24 1 class 9 1 order 8 1963360 1008 0 Parachlamydiales family 1 3 Parachlamydiaceae 0 628 4 92713 1 genus 356 83551 0 species 1 0 Parachlamydia acanthamoebae 356 83552 genus 1 0 282132 268 1 species 389348 268 Candidatus Protochlamydia naegleriophila 0 2 family 199 92712 0 0 Simkania 34093 2 199 genus 1 2 0 Simkania negevensis 197 83561 species 1 3 1 family 173 1 92714 Waddliaceae 0 71666 3 172 0 Waddlia 2 1 genus 71667 169 0 Waddlia chondrophila 1 species Chlamydiales 0 2274 51291 2 order 14 1 809 2 2272 0 Chlamydiaceae 1 13 family 12 no rank 2270 1113537 0 Chlamydia 0 2270 38 810 genus 1 12 1 species 83554 239 Chlamydia psittaci 0 151 83555 Chlamydia abortus 0 1 species 1 species 85991 232 0 Chlamydia pecorum species 1 Chlamydia felis 0 197 83556 species 1 Chlamydia avium 0 165 1457141 301 83558 0 Chlamydia pneumoniae 1 species 1 species 156 813 Chlamydia trachomatis 0 264 1457153 0 Chlamydia gallinacea 1 species 0 Chlamydia caviae 187 83557 species 1 1 species 83560 202 Chlamydia muridarum 0 1 species 138 83559 Chlamydia suis 0 3 phylum 282 256845 0 1 3 class 282 29 1313211 Lentisphaeria 0 1 2 order 6 278082 253 Victivallales 0 no rank 1 0 247 1674876 1 species 2094242 247 Victivallales bacterium CCUG 44730 0 0 134625 192 phylum 3 192 1921781 0 3 class 0 Kiritimatiellales 6 1921782 192 order 3 1 family 2 0 186 1921783 genus 2 1 0 Kiritimatiella 186 1921784 1 0 Kiritimatiella glycovorans 1307763 185 species 1 1 24 phylum 29 74201 3201 0 Verrucomicrobia 1 class 120 134549 0 0 120 134550 genus 1 120 2648876 0 1 no rank Candidatus Xiphinematobacter sp. Idaho Grape 0 1704307 120 species 1 class 1 5 0 Verrucomicrobiae 1 203494 389 4 1 order 48461 9 388 Verrucomicrobiales 0 3 family 1647988 379 0 1 3 genus 239934 4 379 0 Akkermansia species 1 Akkermansia glycaniphila 0 221 1679444 Akkermansia muciniphila 0 239935 154 species 1 class 5 0 1955630 576 576 717963 4 0 Methylacidiphilales 1 5 order family 1 4 0 Methylacidiphilaceae 717964 3 572 2 511745 569 Methylacidiphilum 0 1 3 genus 1 species 391 591154 0 Methylacidiphilum fumariolicum Methylacidiphilum infernorum 0 176 511746 species 1 414999 7 1570 Opitutae 0 1 10 class order 3 0 415001 442 0 Puniceicoccaceae 2 415002 442 family 3 1 440 1 442430 0 Coraliomargarita 2 1 genus 439 395922 0 Coraliomargarita akajimensis 1 species order 6 1 Opitutales 0 415000 4 1121 5 1 family 1117 2 134623 0 Opitutaceae 304 178440 0 1 genus 1 species 304 107709 Opitutus terrae 0 0 452 278955 no rank 1 species 1 0 Opitutaceae bacterium TAV5 452 794903 Lacunisphaera 0 359 1 1961799 genus 2 1 1 species 1838286 358 0 Lacunisphaera limnophila 417295 517 0 2 no rank 0 Verrucomicrobia bacterium 2026799 285 species 1 232 1637999 Verrucomicrobia bacterium IMCC26134 0 1 species 2946 200930 0 11 phylum 0 Deferribacteres 2946 68337 3 class 11 1 1 10 order 2943 191393 15 0 Deferribacterales family 1 9 0 Deferribacteraceae 10 191394 2928 0 Calditerrivibrio 566 4 545865 genus 2 1 0 Calditerrivibrio nitroreducens 477976 562 species 1 349 117999 11 Denitrovibrio 0 2 1 genus Denitrovibrio acetiphilus 0 118000 338 species 1 0 Flexistipes 502 2351 1 genus 1 2 2352 501 0 Flexistipes sinusarabici 1 species 2 1 genus 53572 13 1501 0 Deferribacter species 1 0 Deferribacter desulfuricans 1488 197162 25 phylum 200783 5260 0 Aquificae 0 5260 28 187857 class 25 1 1 19 order 12 32069 4358 Aquificales 0 2 224027 2142 Hydrogenothermaceae 0 1 5 family 532 182899 0 1 genus 1 species 309805 532 0 Persephonella marina genus 3 1 Sulfurihydrogenibium 0 1608 212790 12 309806 783 Sulfurihydrogenibium azorense 0 1 species 2619248 813 0 1 no rank 1 species 436114 813 Sulfurihydrogenibium sp. YO3AOP1 0 family 1 12 0 Aquificaceae 3 64898 1991 75905 191 0 2 genus species 1 0 Thermocrinis albus 136094 87 104 75906 Thermocrinis ruber 0 1 species 2713 1 105 Aquifex 0 1 2 genus species 1 0 Aquifex aeolicus 104 63363 1 6 genus 168657 57 1592 0 Hydrogenobaculum 0 1535 2622382 no rank 5 species 1 0 Hydrogenobaculum sp. Y04AAS1 380749 323 547144 303 0 Hydrogenobaculum sp. HO 1 species 1 species 303 547146 Hydrogenobaculum sp. SN 0 1 species 303 547145 0 Hydrogenobaculum sp. SHO species 1 Hydrogenobaculum sp. 3684 0 547143 303 100 939 0 1 genus 100 940 Hydrogenobacter thermophilus 0 1 species 1 no rank 90150 213 0 1 genus 412592 213 0 species 1 Thermosulfidibacter takaii 0 412593 213 1 5 order 874 5 1485951 0 Desulfurobacteriales 0 Desulfurobacteriaceae 869 4 558314 family 1 4 genus 1 0 171868 91 228745 91 Thermovibrio ammonificans 0 1 species 774 64159 2 Desulfurobacterium 0 1 2 genus species 1 Desulfurobacterium thermolithotrophum 0 772 64160 0 1088 68297 phylum 6 1088 203486 1 0 Dictyoglomia 6 1 class 203487 3 1087 0 Dictyoglomales 1 5 order Dictyoglomaceae 0 7 203488 1084 family 4 1 1 3 genus 1077 13 6 0 Dictyoglomus species 1 Dictyoglomus turgidum 0 513050 527 0 Dictyoglomus thermophilum 544 14 species 1 0 203691 18943 phylum 55 Spirochaetia 0 48 203692 18943 class 55 1 order 7 1 0 Brachyspirales 4166 2 1643686 family 1 6 0 Brachyspiraceae 4164 143786 2 5 1 genus 4162 19 29521 0 Brachyspira 0 Brachyspira murdochii 866 84378 species 1 159 1087 Brachyspira hyodysenteriae 0 1 species 935 84377 Brachyspira intermedia 0 1 species 0 Brachyspira pilosicoli 52584 1255 species 1 39 1 order 136 35 11865 Spirochaetales 0 7616 21 1643685 Borreliaceae 0 17 1 family 8 1 genus 86 138 4273 0 Borrelia Borrelia turicatae 0 386 142 species 1 1 species 44449 567 Borrelia recurrentis 0 1 species 40834 1315 0 Borrelia duttonii species 1 0 Borrelia anserina 143 382 Borrelia parkeri 0 141 346 species 1 Borrelia hermsii 0 140 355 species 1 1 species 836 47466 0 Borrelia miyamotoi genus 8 1 0 Borreliella 64895 173 3322 0 Borreliella valaisiana 385 62088 species 1 664662 384 0 Borreliella bavariensis 1 species 29519 769 Borreliella garinii 0 1 species species 1 0 Borreliella burgdorferi 139 433 0 Borreliella afzelii 377 29518 species 1 species 1 0 Borrelia mayonii 1674146 425 1 species 376 64897 Borreliella bissettii 0 0 Spirochaetaceae 12 137 4214 family 1 21 genus 1 0 250 1911556 0 Sediminispirochaeta smaragdinae 250 55206 species 1 genus 4 1 0 Sphaerochaeta 1 399320 377 149 1131707 Sphaerochaeta pleomorpha 0 1 species 1 species 121 1131703 0 Sphaerochaeta globosa 1 species 106 273376 Sphaerochaeta coccoides 0 2171 19 157 0 Treponema 1 12 genus 150829 137 0 Treponema azotonutricium 1 species Treponema primitia 0 88058 228 species 1 1 species 275 409322 0 Treponema pedis 1 species 215591 173 0 Treponema caldarium 88 160 0 Treponema pallidum 1 species 83 53435 Treponema paraluiscuniculi 0 1 species 1 no rank 140 2638727 0 species 1 0 Treponema sp. OMZ 838 140 1539298 1 species 245 158 Treponema denticola 0 324 167 Treponema succinifaciens 0 1 species Treponema brennaborense 0 81028 142 species 1 317 221027 Treponema putidum 0 1 species 0 1020 1616789 genus 1 1307761 1020 Salinispira pacifica 0 1 species 0 384 146 genus 2 189 46355 0 Spirochaeta africana 1 species species 1 0 Spirochaeta thermophila 195 154 0 1643688 2864 order 8 family 8 1 0 Leptospiraceae 2864 20 170 149 338321 0 1 genus 1 species 149 29510 0 Turneriella parva 6 1 genus 171 9 2695 0 Leptospira 28183 331 0 Leptospira santarosai 1 species species 1 Leptospira borgpetersenii 0 525 174 Leptospira alstonii 0 28452 281 species 1 species 1 Leptospira interrogans 0 173 1044 1 species 505 172 0 Leptospira biflexa 10 phylum 508458 617 0 10 1 class 617 1 649775 0 Synergistia 616 3 649776 Synergistales 0 1 9 order 2 649777 613 Synergistaceae 0 8 1 family 0 109 49894 genus 1 97477 109 Acetomicrobium mobile 0 1 species 81466 2 162 Aminobacterium 0 2 1 genus 81468 160 Aminobacterium colombiense 0 1 species 0 121 336260 genus 1 Thermovirga lienii 0 336261 121 species 1 genus 1 0 81461 90 0 Thermanaerovibrio acidaminovorans 81462 90 species 1 2 1 genus 508459 2 129 0 Cloacibacillus species 1 Cloacibacillus porcorum 0 1197717 127 200940 2104 0 9 phylum 9 67799 2104 Thermodesulfobacteria 0 1 9 class 0 Thermodesulfobacteriales 2095 12 188710 order 8 1 family 7 1 Thermodesulfobacteriaceae 0 1 188711 2083 genus 2 1 0 Thermodesulfatator 2 241192 251 1 species 171695 249 0 Thermodesulfatator indicus 1 3 genus 1510 4 1740 Thermodesulfobacterium 0 1295609 1070 0 Thermodesulfobacterium geofontis 1 species 1741 436 Thermodesulfobacterium commune 0 1 species 0 321 444090 genus 1 1653476 321 Caldimicrobium thiodismutans 0 1 species 5 phylum 214 200938 0 214 1 118001 0 Chrysiogenetes 5 1 class 0 Chrysiogenales 189769 7 213 order 1 4 0 Chrysiogenaceae 189770 3 206 family 1 3 2 1 genus 203 393029 4 Desulfurispirillum 0 Desulfurispirillum indicum 0 199 936456 species 1 phylum 41 0 200918 9494 41 1 class 23 188708 9494 Thermotogae 0 625 9 1643946 Kosmotogales 0 1 5 order 0 1643948 616 family 4 2 1184396 147 Mesotoga 0 1 2 genus species 1 0 Mesotoga prima 145 1184387 genus 2 0 651456 469 1330330 281 0 Kosmotoga pacifica 1 species 1 species 188 651457 Kosmotoga olearia 0 9 1643947 3334 Petrotogales 0 7 1 order family 6 0 1643949 3325 1 genus 555 28236 0 1 species 69499 555 0 Petrotoga mobilis 3 1 genus 2043 32 160798 0 Marinitoga no rank 1 0 2640159 994 0 Marinitoga sp. 1137 1545835 994 species 1 1017 149715 0 Marinitoga piezophila 1 species 727 1 1511648 0 Defluviitoga 2 1 genus species 1 0 Defluviitoga tunisiensis 726 1006576 7 2419 5512 Thermotogales 0 1 28 order 1829 11 188709 0 Thermotogaceae 17 1 family 30 2335 885 Thermotoga 0 1 11 genus 1 species 303 1508420 Thermotoga profunda 0 no rank 4 0 224 2631113 1 species 40 1157947 0 Thermotoga sp. Cell2 0 Thermotoga sp. RQ7 54 126738 species 1 0 Thermotoga sp. RQ2 126740 57 species 1 Thermotoga sp. 2812B 0 73 1157948 species 1 Thermotoga naphthophila 0 79 93930 species 1 1 species 62 2337 Thermotoga neapolitana 0 64 93929 0 Thermotoga petrophila 1 species 0 Thermotoga maritima 2336 79 species 1 Thermotoga caldifontis 0 1508419 44 species 1 1 5 genus 933 14 1643951 Pseudothermotoga 0 1 species 238 119394 Pseudothermotoga thermarum 0 species 1 0 Pseudothermotoga hypogea 57487 64 0 Pseudothermotoga lettingae 177758 312 species 1 38322 305 0 Pseudothermotoga elfii 1 species 0 Fervidobacteriaceae 3676 10 1643950 family 1 10 1 5 genus 16 2420 2718 0 Thermosipho 1 species 46541 636 Thermosipho melanesiensis 0 0 Thermosipho africanus 848 2421 species 1 0 2676525 1218 no rank 2 0 Thermosipho sp. 1070 617 1437364 species 1 species 1 0 Thermosipho sp. 1063 601 1462747 948 2422 5 0 Fervidobacterium 4 1 genus 1 species 347 93466 0 Fervidobacterium pennivorans 0 Fervidobacterium nodosum 395 2424 species 1 species 1 Fervidobacterium islandicum 0 2423 201 phylum 1 11 Elusimicrobia 0 7 74152 1093 class 5 0 576 447830 order 5 1 Endomicrobiales 0 576 1 1783344 family 4 1 Endomicrobiaceae 0 2 1783343 575 3 1 genus 2 1408194 573 Endomicrobium 0 1408204 292 Candidatus Endomicrobium trichonymphae 0 1 species 1 species 279 1408281 Endomicrobium proavitum 0 4 class 206 641853 0 0 Elusimicrobiales 206 1 641854 order 1 4 3 1 family 205 641876 2 Elusimicrobiaceae 0 203 423604 1 0 Elusimicrobium 1 2 genus species 1 Elusimicrobium minutum 0 423605 202 1 no rank 304 99260 0 uncultured Termite group 1 bacterium 0 167965 304 species 1 363 clade 212646 1783270 0 456828 351 0 2 phylum Candidatus Cloacimonas 0 1 456826 351 genus 2 1 1 species 456827 350 Candidatus Cloacimonas acidaminovorans 0 0 68336 210691 clade 352 0 1090 2800 phylum 21 1 21 class 2800 25 191410 Chlorobia 0 1 20 order 2775 9 191411 0 Chlorobiales 19 1 family 191412 31 2766 0 Chlorobiaceae 100715 244 0 1 genus 1 species 100716 244 0 Chloroherpeton thalassium 1 5 genus 650 1101 24 Prosthecochloris 0 species 1 0 Prosthecochloris aestuarii 153 1102 no rank 3 0 473 2632826 117 281093 0 Prosthecochloris sp. GSB1 1 species 1868325 219 0 Prosthecochloris sp. CIB 2401 1 species 1974213 137 Prosthecochloris sp. HL-130-GSB 0 1 species genus 4 1 0 Chlorobaculum 398 256319 46 1 species 1097 113 Chlorobaculum tepidum 0 1 species 104 274539 0 Chlorobaculum parvum 1 species 135 274537 Chlorobaculum limnaeum 0 8 no rank 274493 1443 0 24 1091 1130 0 Chlorobium 1 5 genus species 1 0 Chlorobium phaeovibrioides 176 1094 0 Chlorobium limicola 158 1092 species 1 species 1 Chlorobium phaeobacteroides 0 465 1096 337090 307 0 Chlorobium chlorochromatii 1 species 1 3 genus 313 1099 2 Pelodictyon 0 1 species 221 34090 0 Pelodictyon phaeoclathratiforme 1 species 1100 90 Pelodictyon luteolum 0 7 phylum 1608 1134404 0 2 795747 1608 0 Ignavibacteria 7 1 class 795748 9 1606 0 Ignavibacteriales 6 1 order 3 1 family 1313 795749 5 0 Ignavibacteriaceae 0 Ignavibacterium 4 795750 1308 genus 1 2 1 species 1304 591197 0 Ignavibacterium album 1334117 284 0 2 family 2 1 genus 284 2 1134403 0 Melioribacter species 1 Melioribacter roseus 0 1134405 282 Bacteroidetes 0 206283 976 25 phylum 324 1 7 1100069 816 Bacteroidetes Order II. Incertae sedis 0 6 1 order 0 Rhodothermaceae 563843 14 809 family 5 1 genus 1 2 Rhodothermus 0 29548 3 211 species 1 0 Rhodothermus marinus 29549 208 genus 1 0 251 146918 1 species 251 146919 0 Salinibacter ruber 1 no rank 1196022 333 0 1 species 1779382 333 Rhodothermaceae bacterium RA 0 Flavobacteriia 0 86 117743 158888 class 145 1 158802 122 200644 Flavobacteriales 0 1 144 order 101 1 family 49546 605 132605 0 Flavobacteriaceae 7626 1016 70 0 Capnocytophaga 1 15 genus species 1 0 Capnocytophaga haemolytica 224 45243 1 species 1018 318 0 Capnocytophaga ochracea 327575 368 0 Capnocytophaga leadbetteri 1 species 1011 28188 0 Capnocytophaga canimorsus 1 species 28189 783 0 Capnocytophaga cynodegmi 1 species species 1 0 Capnocytophaga gingivalis 330 1017 species 1 Capnocytophaga sputigena 0 936 1019 species 1 Capnocytophaga stomatis 0 1848904 618 no rank 6 0 2640652 2968 654 1945658 Capnocytophaga sp. H4358 0 1 species Capnocytophaga sp. oral taxon 878 0 1316596 551 species 1 1 species 458 209053 0 Capnocytophaga sp. ChDC OS43 0 Capnocytophaga sp. H2931 667 1945657 species 1 0 Capnocytophaga sp. oral taxon 864 296 1316593 species 1 Capnocytophaga sp. oral taxon 323 0 1705617 342 species 1 genus 1 2 0 Zobellia 1 112040 635 species 1 Zobellia galactanivorans 0 634 63186 0 Myroides 3678 61 76831 genus 5 1 0 Myroides odoratimimus 76832 959 species 1 2642485 1793 0 2 no rank 1458492 903 Myroides sp. ZB35 0 1 species species 1 0 Myroides sp. A21 890 1583100 species 1 Myroides profundi 0 865 480520 75 291183 8018 Lacinutrix 0 1 4 genus no rank 2 0 2647285 5286 1 species 983544 2690 Lacinutrix sp. 5H-3-7-4 0 Lacinutrix sp. Bg11-31 0 2057808 2596 species 1 species 1 Lacinutrix venerupis 0 1486034 2657 genus 1 0 2347 1649495 1 no rank 2622645 2347 0 1 species 2347 1936081 Seonamhaeicola sp. S2-3 0 genus 1 3 Winogradskyella 0 4829 20 286104 2615021 4809 0 2 no rank Winogradskyella sp. J14-2 0 1886 1936080 species 1 Winogradskyella sp. PG-2 0 2923 754409 species 1 Algibacter 0 2511 261827 1 genus 2 1 species 1 Algibacter alginicilyticus 0 1736674 2510 1 4 genus 6982 36 104264 Cellulophaga 0 Cellulophaga baltica 0 76594 2234 species 1 2130 59600 0 Cellulophaga algicola 1 species 1 species 2582 979 Cellulophaga lytica 0 1 genus 216431 1989 0 1989 313588 Croceibacter atlanticus 0 1 species 2700084 3164 0 1 genus 1 species 3164 1850246 Lutibacter sp. LPB0138 0 0 2248 336276 genus 1 1 no rank 2248 2615019 0 species 1 0 Olleya sp. Bg11-27 2248 2058135 0 61432 2421 no rank 2 1 species 360 531844 Flavobacteriaceae bacterium 3519-10 0 1150389 2061 Flavobacteriaceae bacterium UJ101 0 1 species 1176327 678 0 1 genus 1 no rank 678 2636237 0 Aureitalea sp. RR4-38 0 678 2094025 species 1 0 Muricauda 1168 111500 2 genus 3 1 1 species 427 516051 Muricauda lutaonensis 0 species 1 0 Muricauda ruestringensis 739 111501 genus 1 0 178469 922 922 616991 0 Arenibacter algicola 1 species genus 1 0 1190 153265 species 1 Aequorivita sublithincola 0 101385 1190 143222 1250 0 1 genus 0 2633436 1250 no rank 1 0 Salegentibacter sp. T436 1250 1729720 species 1 Polaribacter 0 14740 81 52959 genus 1 6 3 no rank 196858 8333 0 Polaribacter sp. MED152 0 313598 3024 species 1 2058137 2510 0 Polaribacter sp. ALD11 1 species species 1 0 Polaribacter sp. BM10 1529069 2799 1 species 996801 3138 Polaribacter reichenbachii 0 3188 1774273 0 Polaribacter vadi 1 species genus 1 3 0 Formosa 6170 20 225842 2 no rank 2644710 6150 0 1336795 3959 0 Formosa sp. Hel3_A1_48 1 species 1 species 1336794 2191 0 Formosa sp. Hel1_33_131 831 389486 0 1 genus 0 2648869 831 no rank 1 species 1 Sediminicola sp. YIK13 0 1453352 831 1 genus 1518147 2071 0 1 species 2071 1790137 Wenyingzhuangia fucanilytica 0 1 4 genus 35 326319 4994 0 Dokdonia Dokdonia donghaensis 0 1740 326320 species 1 no rank 2 0 2615033 3219 983548 1321 Dokdonia sp. 4H-3-7-5 0 1 species species 1 Dokdonia sp. MED134 0 313590 1898 14553 39 237 0 Flavobacterium 9 1 genus species 1 Flavobacterium gilvum 0 1492737 1277 1331 55197 0 Flavobacterium branchiophilum 1 species 1 species 1315 1306519 0 Flavobacterium commune species 1 Flavobacterium crassostreae 0 1015 1763534 species 1 0 Flavobacterium johnsoniae 986 3241 1341 96345 0 Flavobacterium psychrophilum 1 species 996 2969 0 Flavobacterium columnare 1 species 0 Flavobacterium indicum 2025 312277 species 1 Lutibacter 0 2947 358023 15 genus 1 2 2932 1622118 0 Lutibacter profundi 1 species genus 5 1 Maribacter 0 42 252356 5846 1178778 828 0 Maribacter cobaltidurans 1 species no rank 3 0 2615042 4976 1644130 1866 Maribacter sp. 1_2014MBL_MicDiv 0 1 species Maribacter sp. HTCC2170 0 313603 1290 species 1 species 1 0 Maribacter sp. T28 1820 1836467 genus 1 0 230 252306 1 species 252307 230 0 Robiginitalea biformata 0 83612 1602 genus 1 Psychroflexus torquis 0 57029 1602 species 1 1 5 genus 104267 46 9877 0 Tenacibaculum 0 Tenacibaculum maritimum 2106 107401 species 1 1951 669041 Tenacibaculum dicentrarchi 0 1 species 2754 1850252 Tenacibaculum todarodis 0 1 species 584609 3020 Tenacibaculum jejuense 0 1 species genus 1 0 393005 1660 1 species 1660 2069432 0 Tamlana sp. UJ94 1 genus 1590 417127 0 1 species 398743 1590 Zunongwangia profunda 0 0 2081 1204360 genus 1 species 1 0 Siansivirga zeaxanthinifaciens 2081 762954 0 1209327 1942 genus 1 1 species 1942 1803846 0 Flavivirga eckloniae Gramella 0 3773 292691 25 genus 5 1 1 species 581 1486245 0 Gramella flava 1244 411153 Gramella forsetii 0 1 species 1913577 1023 0 Gramella sp. LPB0144 1 species 2126553 900 0 Gramella sp. SH35 1 species genus 5 1 Nonlabens 0 5437 87 363408 1 species 1418 319236 0 Nonlabens sediminis 0 2615035 2620 no rank 2 1 species 2058134 1224 0 Nonlabens sp. MB-3u-79 species 1 Nonlabens sp. MIC269 0 1396 1476901 0 Nonlabens dokdonensis 328515 1312 species 1 4 no rank 313602 1530 0 1 2 genus 1236 5 336809 0 Candidatus Sulcia 1 species 336810 1231 0 Candidatus Sulcia muelleri genus 2 1 0 Candidatus Walczuchella 294 5 1940138 species 1 0 Candidatus Walczuchella monophlebidarum 1415657 289 39782 2 6000 0 Blattabacteriaceae 1 10 family Blattabacterium 0 44 34098 5998 genus 1 9 164514 851 0 Blattabacterium punctulatus 1 species 804 1653831 Blattabacterium cuenoti 0 1 species 6 no rank 4299 2647581 0 0 Blattabacterium sp. (Periplaneta americana) 367488 747 species 1 1186051 792 0 Blattabacterium sp. (Blaberus giganteus) 1 species species 1 0 Blattabacterium sp. (Blattella germanica) 624186 696 724 367806 0 Blattabacterium sp. (Blatta orientalis) 1 species species 1 0 Blattabacterium sp. (Mastotermes darwiniensis) 578 39768 species 1 Blattabacterium sp. (Nauphoeta cinerea) 0 762 1316444 family 2 0 1853230 985 genus 1 2 Fluviicola 0 985 2 332102 0 Fluviicola taffensis 983 191579 species 1 9 1755828 823 Ichthyobacteriaceae 0 1 3 family genus 1 2 Ichthyobacterium 0 17 1755829 814 Ichthyobacterium seriolicida 0 797 242600 species 1 825 1333713 0 2 family genus 1 2 0 Owenweeksia 825 15 267986 species 1 0 Owenweeksia hongkongensis 253245 810 family 1 0 Cryomorphaceae 11 246874 15901 2762318 0 20 family 1 genus 28250 593 0 593 28251 0 Ornithobacterium rhinotracheale 1 species 2 1 genus 1303 34084 1 0 Riemerella species 1 Riemerella anatipestifer 0 1302 34085 10 no rank 8128 2782232 0 423 2782228 0 1 genus Chryseobacterium taklimakanense 0 423 536441 species 1 genus 9 1 0 Chryseobacterium 7705 45 59732 Chryseobacterium camelliae 0 1265445 284 species 1 1 species 1324352 680 0 Chryseobacterium gallinarum 1 species 1618 1685010 0 Chryseobacterium glaciei 1 species 253 1491 Chryseobacterium indologenes 0 0 2593645 2642 no rank 3 species 1 0 Chryseobacterium sp. T16E-39 1096 2015076 Chryseobacterium sp. StRB126 0 882 878220 species 1 1721091 664 0 Chryseobacterium sp. IHB B 17019 1 species 945 558152 0 Chryseobacterium piperi 1 species genus 1 6 0 Elizabethkingia 46 308865 5265 804 238 0 Elizabethkingia meningoseptica 1 species 771 1756149 0 Elizabethkingia genomosp. 3 1 species 0 Elizabethkingia genomosp. 4 1756150 687 species 1 1 species 1152 172045 0 Elizabethkingia miricola 1805 1117645 Elizabethkingia anophelis 0 1 species 1 genus 1013 612 0 species 1 Weeksella virosa 0 612 1014 class 24 1 0 Sphingobacteriia 22 117747 11348 1 23 order 23 200666 11326 Sphingobacteriales 0 1 22 family 84566 60 11303 Sphingobacteriaceae 0 845 1649482 9 Pseudopedobacter 0 2 1 genus species 1 Pseudopedobacter saltans 0 836 151895 764 929509 6 0 Solitalea 1 2 genus 758 995 Solitalea canadensis 0 1 species Sphingobacterium 0 2885 28453 28 genus 1 6 1 species 485 1010 0 Sphingobacterium mizutaii no rank 4 0 2372 2609468 1 species 2003121 601 0 Sphingobacterium sp. G1-14 1538644 728 Sphingobacterium sp. ML3W 0 1 species 1 species 465 743722 Sphingobacterium sp. 21 0 578 1933220 0 Sphingobacterium sp. B29 1 species genus 1 6 0 Pedobacter 3863 44 84567 Pedobacter ginsengisoli 0 363852 960 species 1 430522 582 0 Pedobacter steynii 1 species 0 Pedobacter cryoconitis 188932 890 species 1 0 Pedobacter heparinus 984 480 species 1 2628915 907 0 1 no rank 1727164 907 0 Pedobacter sp. PACM 27299 1 species no rank 1 0 84568 1528 species 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1528 1986952 14 423349 1358 Mucilaginibacter 0 1 4 genus Mucilaginibacter sp. BJC16-A31 0 1234841 461 species 1 0 333 2617802 no rank 1 1300914 333 0 Mucilaginibacter sp. PAMC 26640 1 species 550 1550579 Mucilaginibacter gotjawali 0 1 species 0 1937959 956 class 4 order 4 0 956 1936988 family 2 0 338 89374 Saprospira 0 9 1007 338 genus 2 1 0 Saprospira grandis 329 1008 species 1 family 2 0 1937961 618 2349 4 618 0 Haliscomenobacter 1 2 genus 1 species 2350 614 0 Haliscomenobacter hydrossis Cytophagia 0 19 768503 17904 class 60 1 59 1 order 17885 768507 61 Cytophagales 0 1 4 family 764 8 1501348 Amoebophilaceae 0 1 genus 250 273135 0 1 no rank 2641185 250 0 species 1 0 Cardinium endosymbiont of Encarsia pergandiella 249402 250 2 1 genus 506 281119 7 0 Candidatus Amoebophilus 281120 499 0 Candidatus Amoebophilus asiaticus 1 species 1 4 family 3 200667 2706 0 Flammeovirgaceae no rank 1 0 340671 1249 1 species 1249 1257021 Flammeovirgaceae bacterium 311 0 2 1 genus 1454 59739 9 0 Flammeovirga no rank 1 0 1445 2637820 Flammeovirga sp. MY04 0 1191459 1445 species 1 1 3 family 22 1937968 1757 0 Bernardetiaceae 1 2 genus 1735 1937972 8 0 Bernardetia 1 species 999 1727 0 Bernardetia litoralis 2762301 1326 0 2 family genus 2 1 Marivirga 0 1326 869806 15 1 species 1006 1311 0 Marivirga tractuosa 710 1853234 1 0 Persicobacteraceae 1 3 family genus 2 1 Persicobacter 0 59740 11 709 1 no rank 2664020 698 0 1085624 698 0 Persicobacter sp. JZB09 1 species Hymenobacteraceae 0 3161 10 1853232 family 1 16 1621 35 89966 0 Hymenobacter 8 1 genus 1446467 189 0 Hymenobacter swuensis 1 species 0 Hymenobacter sedentarius 250 1411621 species 1 no rank 5 0 2615202 1147 Hymenobacter sp. DG25A 0 117 1385663 species 1 1 species 348 1484118 Hymenobacter sp. PAMC 26628 0 1 species 1484116 324 Hymenobacter sp. PAMC 26554 0 0 Hymenobacter sp. APR13 1356852 209 species 1 1385664 149 Hymenobacter sp. DG25B 0 1 species genus 4 1 Rufibacter 0 1379908 22 972 no rank 2 0 555 2639626 1 species 1379910 282 0 Rufibacter sp. DG31D 1 species 1379909 273 Rufibacter sp. DG15C 0 species 1 Rufibacter tibetensis 0 395 512763 0 Pontibacter 558 12 323449 genus 1 3 0 Pontibacter akesuensis 388950 213 species 1 333 400092 Pontibacter korlensis 0 1 species family 16 1 0 Cytophagaceae 9 89373 3399 2 1 genus 574 978 9 Cytophaga 0 Cytophaga hutchinsonii 0 985 565 species 1 genus 2 1 Leadbetterella 0 454 10 319458 444 316068 0 Leadbetterella byssophila 1 species 0 Runella 105 1 492 genus 1 2 1 species 106 491 0 Runella slithyformis 1 2 genus 301 6 120831 0 Dyadobacter 295 94254 0 Dyadobacter fermentans 1 species genus 1 0 186 861914 1 no rank 186 2620963 0 0 Fibrella sp. ES10-3-2-2 186 1834519 species 1 107 11 1383 0 Spirosoma 1 6 genus Spirosoma rigui 0 201 564064 species 1 288 1211326 0 Spirosoma aerolatum 1 species Spirosoma montaniterrae 0 1178516 281 species 1 2057025 293 Spirosoma sp. HA7 0 1 species 1 species 309 1379870 0 Spirosoma radiotolerans 4001 4 563798 0 Cyclobacteriaceae 10 1 family 1814 9 68288 0 Cyclobacterium 1 3 genus Cyclobacterium amurskyense 0 320787 920 species 1 species 1 0 Cyclobacterium marinum 885 104 2 1 genus 232244 16 1144 0 Belliella 1128 232259 0 Belliella baltica 1 species 586 246875 5 Algoriphagus 0 2 1 genus 1727163 581 Algoriphagus sp. M8-2 0 1 species 2 1 genus 453 18 390846 0 Echinicola 390884 435 Echinicola vietnamensis 0 1 species 3212 11 1853228 Chitinophagia 0 16 1 class 3201 1853229 14 Chitinophagales 0 15 1 order 3187 22 563835 0 Chitinophagaceae 1 14 family Niabella 0 379899 12 533 genus 3 1 1 species 1176587 273 Niabella ginsenosidivorans 0 species 1 0 Niabella soli 446683 248 genus 1 2 Filimonas 0 4 649460 367 Filimonas lacunae 0 477680 363 species 1 562 3 398041 0 Flavisolibacter 1 2 genus 559 1492898 Flavisolibacter tropicus 0 1 species 590 79328 0 2 genus 1 species 307 2029983 0 Chitinophagaceae bacterium 13 283 79329 Chitinophaga pinensis 0 1 species 354354 1 439 0 Niastella 1 2 genus 0 Niastella koreensis 354356 438 species 1 Arachidicoccus 0 674 1769012 5 genus 2 1 669 2636138 0 1 no rank 0 Arachidicoccus sp. BS20 669 1850526 species 1 class 68 1 0 Bacteroidia 17 200643 13134 2974 19 1970189 0 Marinilabiliales 11 1 order Marinilabiliaceae 0 637 9 558415 family 3 1 2 1 genus 628 10 1193324 0 Alkalitalea species 1 Alkalitalea saponilacus 0 618 889453 family 2 1 Marinifilaceae 0 1146 1 1573805 1145 2060722 0 1 genus 0 Marinifilaceae bacterium SPP2 1145 1717717 species 1 Prolixibacteraceae 0 596 2 1471398 family 1 3 1 2 genus 594 5 1471399 0 Draconibacterium 1168034 589 Draconibacterium orientale 0 1 species 2 family 576 1970190 0 genus 1 2 Salinivirga 0 1970191 10 576 species 1 0 Salinivirga cyanobacteriivorans 566 1307839 10143 55 171549 Bacteroidales 0 1 56 order 1 11 family 2370 815 8 0 Bacteroidaceae 2362 29 816 0 Bacteroides 10 1 genus 0 Bacteroides zoogleoformans 28119 115 species 1 Bacteroides caccae 0 222 47678 species 1 Bacteroides helcogenes 0 290053 197 species 1 species 1 Bacteroides fragilis 0 541 817 species 1 Bacteroides heparinolyticus 0 28113 168 323 818 Bacteroides thetaiotaomicron 0 1 species 1 species 1796613 207 0 Bacteroides caecimuris species 1 Bacteroides cellulosilyticus 0 284 246787 1 species 28116 276 Bacteroides ovatus 0 family 1 11 Prevotellaceae 0 2 171552 2168 1 10 genus 838 27 2166 0 Prevotella 638 28131 0 Prevotella intermedia 1 species 0 Prevotella enoeca 76123 148 species 1 species 1 Prevotella denticola 0 67 28129 species 1 Prevotella jejuni 0 224 1177574 28132 173 0 Prevotella melaninogenica 1 species Prevotella ruminicola 0 184 839 species 1 no rank 1 0 394 2638335 1 species 394 652716 0 Prevotella sp. oral taxon 299 species 1 Prevotella dentalis 0 134 52227 species 1 0 Prevotella fusca 589436 177 315 171550 1 Rikenellaceae 0 5 1 family genus 2 1 0 Alistipes 152 7 239759 0 Alistipes finegoldii 214856 145 species 1 162 1611681 3 Mucinivorans 0 1 2 genus 1 species 1433126 159 0 Mucinivorans hirudinis 404 4 171551 0 Porphyromonadaceae 4 1 family 0 Porphyromonas 400 14 836 genus 3 1 Porphyromonas gingivalis 0 837 261 species 1 Porphyromonas asaccharolytica 0 28123 125 species 1 no rank 1 0 185291 221 1 species 221 1400053 Bacteroidales bacterium CF 0 no rank 5 0 333046 1917 909656 847 0 3 genus 1 species 275 821 0 Bacteroides vulgatus 0 Bacteroides dorei 270 357276 species 1 species 1 0 Bacteroides salanitronis 376805 302 Candidatus Azobacteroides 0 1070 511434 11 genus 1 2 1 species 511435 1059 0 Candidatus Azobacteroides pseudotrichonymphae 0 Barnesiellaceae 108 2 2005519 family 1 2 0 397864 106 genus 1 106 397865 0 Barnesiella viscericola 1 species 1 7 family 1 2005525 771 0 Tannerellaceae 7 195950 327 0 Tannerella 1 3 genus 1 species 28112 214 Tannerella forsythia 0 2620507 106 0 1 no rank species 1 Tannerella sp. oral taxon HOT-286 0 106 712710 genus 3 1 Parabacteroides 0 443 375288 6 Parabacteroides distasonis 0 213 823 species 1 1 no rank 224 2649774 0 species 1 0 Parabacteroides sp. CT06 2025876 224 family 2 0 2005523 526 2 1 genus 526 3 346096 0 Paludibacter species 1 0 Paludibacter propionicigenes 523 185300 5 family 2005520 1006 0 0 148 307628 genus 1 0 Petrimonas mucosa 148 1642646 species 1 1 2 genus 232 294702 1 0 Proteiniphilum 1 species 1642647 231 0 Proteiniphilum saccharofermentans Fermentimonas 0 5 1784836 626 genus 1 2 0 Fermentimonas caenicola 1562970 621 species 1 282 1853231 0 2 family Odoribacter 0 283168 7 282 genus 2 1 1 species 275 28118 Odoribacter splanchnicus 0 7 phylum 142182 1257 0 0 Gemmatimonadetes 6 219685 1257 class 1 7 Gemmatimonadales 0 219686 6 1251 order 6 1 1245 7 219687 0 Gemmatimonadaceae 5 1 family 1 genus 727 1706036 0 0 Gemmatirosa kalamazoonesis 727 861299 species 1 0 Gemmatimonas 7 173479 511 genus 3 1 species 1 Gemmatimonas aurantiaca 0 262 173480 1 species 242 1379270 Gemmatimonas phototrophica 0 65842 347 0 2 phylum 2 class 347 204430 0 order 2 0 218872 347 2 1 family 347 204431 2 0 Fibrobacteraceae 1 genus 345 832 0 345 833 0 Fibrobacter succinogenes 1 species phylum 1 2004 0 Proteobacteria 919722 205 1224 359937 292 28211 0 Alphaproteobacteria 1 556 class order 1 81 Sphingomonadales 0 16096 204457 86 family 1 22 Erythrobacteraceae 0 4204 29 335929 303 2800682 0 1 genus 1 species 303 645517 Altererythrobacter namhicola 0 1 4 genus 560 361177 76 0 Altererythrobacter 1 species 361183 162 0 Altererythrobacter epoxidivorans 476157 180 0 Altererythrobacter ishigakiensis 1 species Altererythrobacter atlanticus 0 1267766 142 species 1 1 genus 2800685 166 0 species 1 Altererythrobacter marensis 0 543877 166 2 genus 1013 2800681 0 1 species 603 1648404 0 Erythrobacter atlanticus Erythrobacter gangjinensis 0 410 502682 species 1 2 genus 2800686 271 0 Altererythrobacter mangrovi 0 128 1982042 species 1 Altererythrobacter dongtanensis 0 143 692370 species 1 0 1855416 497 genus 2 species 1 0 Erythrobacter seohaensis 123 266951 192812 374 0 Erythrobacter flavus 1 species 1051 2800788 0 6 no rank 3 1 genus 391 19 1111 Porphyrobacter 0 372 2683265 0 2 no rank 2023229 157 0 Porphyrobacter HT-58-2 1 species species 1 0 Porphyrobacter sp. LM 6 1896196 215 genus 1 3 0 Erythrobacter 660 84 1041 species 1 Porphyrobacter neustonensis 0 1112 168 Erythrobacter litoralis 0 39960 408 species 1 1 3 genus 12 1295327 314 0 Croceicoccus species 1 Croceicoccus naphthovorans 0 112 1348774 species 1 0 Croceicoccus marinus 450378 190 family 1 58 0 Sphingomonadaceae 11806 104 41297 genus 1 2 Zymomonas 0 4 541 783 542 779 Zymomonas mobilis 0 1 species 216 150203 1 0 Blastomonas 2 1 genus 2626550 215 0 1 no rank 215 1842535 Blastomonas sp. RAC04 0 1 species genus 15 1 0 Sphingobium 2386 58 165695 0 Sphingobium herbicidovorans 76947 149 species 1 Sphingobium indicum 0 161 332055 species 1 species 1 0 Sphingobium hydrophobicum 1673076 138 species 1 Sphingobium cloacae 0 120107 162 136 1332080 Sphingobium baderi 0 1 species species 1 0 Sphingobium chlorophenolicum 46429 131 no rank 6 0 925 2611147 Sphingobium sp. SYK-6 0 202 627192 species 1 1843368 152 0 Sphingobium sp. RAC03 1 species Sphingobium sp. YBL2 0 142 484429 species 1 1 species 407020 118 0 Sphingobium sp. MI1205 1 species 1315974 184 Sphingobium sp. TKS 0 species 1 Sphingobium sp. EP60837 0 127 1855519 1 species 332056 158 0 Sphingobium japonicum 0 Sphingobium yanoikuyae 13690 368 species 1 genus 1 2 Citromicrobium 0 235 72173 4 231 2630544 0 1 no rank species 1 Citromicrobium sp. JL477 0 231 1634516 genus 1 0 1649486 209 1 species 209 1850238 Rhizorhabdus dicambivorans 0 3870 58 13687 Sphingomonas 0 1 15 genus species 1 Sphingomonas hengshuiensis 0 1609977 225 no rank 6 0 196159 1535 Sphingomonas sp. Cra20 0 206 1327635 species 1 Sphingomonas sp. LM7 0 173 1938607 species 1 species 1 0 Sphingomonas sp. MM-1 745310 238 species 1 0 Sphingomonas sp. NIC1 203 1961362 Sphingomonas sp. KC8 0 1030157 229 species 1 Sphingomonas sp. LK11 0 1390395 486 species 1 1 2 species 160791 300 668 Sphingomonas wittichii 0 1283312 368 Sphingomonas sp. DC-6 0 1 strain Sphingomonas taxi 0 238 1549858 species 1 species 1 0 Sphingomonas panacis 1560345 233 1 species 397260 442 0 Sphingomonas sanxanigenens 1 species 152682 279 0 Sphingomonas melonis species 1 Sphingomonas koreensis 0 192 93064 Sphingorhabdus 0 5 1434046 397 genus 1 3 0 392 2614947 no rank 2 1 species 191 2077182 0 Sphingorhabdus sp. YGSMI21 species 1 0 Sphingorhabdus sp. M41 1806885 201 genus 1 5 Novosphingobium 0 165696 16 871 243 158500 Novosphingobium resinovorum 0 1 species Novosphingobium aromaticivorans 0 170 48935 species 1 0 Novosphingobium pentaromativorans 240 205844 species 1 2644732 202 0 1 no rank species 1 Novosphingobium sp. PP1Y 0 702113 202 1 genus 2685927 111 0 species 1 0 Sphingomonas sp. JJ-A5 1921510 111 1 genus 2709685 200 0 1 species 200 266812 Sphingorhabdus flavimaris 0 48 165697 2424 Sphingopyxis 0 10 1 genus species 1 0 Sphingopyxis fribergensis 194 1515612 1 species 267128 226 0 Sphingopyxis granuli 4 no rank 2614943 1135 0 1 species 488 1913578 Sphingopyxis sp. LPB0140 0 221 1866325 Sphingopyxis sp. MG 0 1 species 1 species 1357916 250 Sphingopyxis sp. QXT-31 0 species 1 Sphingopyxis sp. 113P3 0 176 292913 Sphingopyxis terrae 0 251 33052 species 1 0 Sphingopyxis macrogoltabida 391 33050 species 1 1 species 179 117207 Sphingopyxis alaskensis 0 1 207 order 251 356 60103 0 Rhizobiales family 7 1 Xanthobacteraceae 0 942 335928 9 0 Xanthobacter 279 1 395 genus 2 1 1 species 280 394 Xanthobacter autotrophicus 0 2 1 genus 4 152053 269 0 Starkeya 265 921 0 Starkeya novella 1 species Azorhizobium 0 5 6 269 genus 2 1 species 1 Azorhizobium caulinodans 0 264 7 0 Rhizobiaceae 15639 88 82115 family 52 1 genus 1 6 Liberibacter 0 4395 34019 50 1 species 556287 754 0 Candidatus Liberibacter solanacearum species 1 Candidatus Liberibacter asiaticus 0 707 34021 1 species 1273132 1075 0 Liberibacter crescens 1022 309868 0 Candidatus Liberibacter americanus 1 species 787 34020 0 Candidatus Liberibacter africanus 1 species Shinella 0 323620 4 330 genus 1 2 no rank 1 0 326 2643062 species 1 Shinella sp. HZN7 0 879274 326 33 no rank 7973 227290 0 genus 24 1 Rhizobium 0 356 379 5825 1 species 384 1365 Rhizobium leguminosarum 0 species 1 Rhizobium tropici 0 180 398 species 1 0 Rhizobium etli 29449 696 2613769 2249 0 18 no rank 0 Rhizobium sp. IRBG74 177 424182 species 1 123 1869170 Rhizobium sp. S41 0 1 species species 1 0 Rhizobium sp. NXC14 162 1981173 1703969 174 0 Rhizobium sp. N324 1 species 1703966 49 0 Rhizobium sp. N731 1 species Rhizobium sp. ACO-34A 0 165 1571470 species 1 2028343 161 Rhizobium sp. 10195 0 1 species Rhizobium sp. Y9 0 1914541 144 species 1 species 1 Rhizobium sp. N1314 0 1703961 49 2020313 76 0 Rhizobium sp. TAL182 1 species 1 species 178 1301032 Rhizobium sp. IE4771 0 0 Rhizobium sp. CIAT894 184 2020312 species 1 species 1 0 Rhizobium sp. N1341 1703962 1 3 1703968 Rhizobium sp. N871 0 1 species 1 species 1703960 1 0 Rhizobium sp. N113 species 1 0 Rhizobium sp. NXC24 2048897 219 0 Rhizobium sp. Kim5 171 2020311 species 1 1 species 212 1125847 0 Rhizobium sp. NT-26 species 1 Rhizobium gallicum 0 357 56730 species 1 Rhizobium phaseoli 0 622 396 7 1 genus 1860 14 357 Agrobacterium 0 species 1 0 Agrobacterium vitis 190 373 species group 2 0 1081 1183400 956 358 0 Agrobacterium tumefaciens 1 species 125 1176649 0 Agrobacterium fabrum 1 species 141 359 0 Agrobacterium rhizogenes 1 species 2632611 434 0 2 no rank 1 species 271 1842536 0 Agrobacterium sp. RAC06 163 861208 0 Agrobacterium sp. H13-3 1 species Neorhizobium 0 1 1525371 288 genus 1 2 287 399 0 Neorhizobium galegae 1 species 0 227292 2853 no rank 10 genus 1 7 Sinorhizobium 0 28105 25 2394 263 110321 Sinorhizobium medicae 0 1 species 257 194963 Sinorhizobium americanum 0 1 species 608 663276 0 1 species group 0 Sinorhizobium fredii 608 380 species 1 no rank 2 0 552 2613772 1 species 270 794846 Sinorhizobium sp. CCBAU 05631 0 0 Sinorhizobium sp. RAC02 282 1842534 species 1 Sinorhizobium meliloti 0 689 382 species 1 genus 3 1 0 Ensifer 459 4 106591 1 species 271 106592 Ensifer adhaerens 0 species 1 0 Ensifer sojae 184 716925 Bartonellaceae 0 772 16 16100 family 18 1 0 Bartonella 16084 773 332 genus 1 17 1 species 979 38323 Bartonella henselae 0 388640 623 0 Bartonella australis 1 species 85701 955 Bartonella tribocorum 0 1 species 1 species 774 1036 Bartonella bacilliformis 0 Bartonella apis 0 714 1686310 species 1 56426 1090 0 Bartonella clarridgeiae 1 species 0 Bartonella quintana 767 803 species 1 0 6814 2645622 no rank 6 1 species 1113 515256 Bartonella sp. 1-1C 0 Bartonella sp. WD16.2 0 1113 1933904 species 1 1137 1933907 0 Bartonella sp. JB63 1 species 0 Bartonella sp. JB15 1933906 1137 species 1 1933910 1171 0 Bartonella sp. A1379B 1 species 0 Bartonella sp. Raccoon60 1933912 1143 species 1 913 1318743 Bartonella ancashensis 0 1 species species 1 0 Bartonella grahamii 913 33045 species 1 Bartonella vinsonii 0 33047 948 4 2036754 650 Chelatococcaceae 0 1 4 family 3 1 genus 20 28209 646 Chelatococcus 0 Chelatococcus daeguensis 0 444444 265 species 1 no rank 1 0 2638111 361 0 Chelatococcus sp. CO-6 1702325 361 species 1 69277 24 3995 Phyllobacteriaceae 0 1 20 family genus 2 1 0 Hoeflea 274591 3 349 0 2614931 346 no rank 1 0 Hoeflea sp. IMCC20628 1620421 346 species 1 1 2 genus 168 4 449972 Chelativorans 0 2643807 164 0 1 no rank 1 species 164 266779 0 Chelativorans sp. BNC1 307 28100 1 0 Phyllobacterium 2 1 genus 0 Phyllobacterium zundukense 1867719 306 species 1 2 1 genus 2 31988 282 Aminobacter 0 83263 280 Aminobacter aminovorans 0 1 species 0 Nitratireductor 245876 2 210 genus 2 1 472175 208 Nitratireductor basaltis 0 1 species Mesorhizobium 0 68287 47 2655 genus 1 9 1 no rank 325217 337 0 278153 337 Mesorhizobium sp. WSM1497 0 1 species 1 species 71433 253 Mesorhizobium amorphae 0 39645 412 0 Mesorhizobium ciceri 1 species 0 Mesorhizobium opportunistum 280 593909 species 1 1 species 1670800 454 Mesorhizobium sp. B7 0 1 species 2066070 310 0 Mesorhizobium japonicum 0 Mesorhizobium australicum 216 536018 species 1 1 species 346 381 Mesorhizobium loti 0 family 6 1 Methylocystaceae 0 785 31993 3 genus 3 1 0 Methylocystis 499 19 133 no rank 1 0 213 2625913 187303 213 Methylocystis sp. SC2 0 1 species Methylocystis bryophila 0 655015 267 species 1 genus 2 1 Methylosinus 0 2 425 283 species 1 0 Methylosinus trichosporium 426 281 Aurantimonadaceae 0 969 255475 1 family 7 1 genus 2 1 0 Aureimonas 414371 3 215 2615206 212 0 1 no rank 1349819 212 0 Aureimonas sp. AU20 1 species 0 Martelella 753 20 293088 genus 4 1 1 species 293089 259 0 Martelella mediterranea 261 2629616 0 1 no rank 1 species 686597 261 Martelella sp. AD-3 0 213 1486262 0 Martelella endophytica 1 species Methylobacteriaceae 0 5969 119045 13 family 15 1 0 2792 2282523 genus 3 1 species 29429 240 0 Methylobacterium zatmanii species 1 Methylobacterium extorquens 0 408 2008 544 223967 0 Methylobacterium populi 1 species 1 2 genus 1 186650 317 0 Microvirga Microvirga ossetica 0 1882682 316 species 1 2847 407 65 0 Methylobacterium 1 9 genus Methylobacterium aquaticum 0 464 270351 species 1 species 1 0 Methylobacterium nodulans 114616 440 species 1 Methylobacterium phyllosphaerae 0 418223 278 334852 262 Methylobacterium oryzae 0 1 species 314 31998 0 Methylobacterium radiotolerans 1 species 3 no rank 1024 2615210 0 0 Methylobacterium sp. AMS5 925818 248 species 1 Methylobacterium sp. 4-46 0 515 426117 species 1 1 species 261 1479019 Methylobacterium sp. C1 0 0 Beijerinckiaceae 515 1 45404 family 5 1 Methylocella 0 227 1 120652 genus 1 2 0 Methylocella silvestris 199596 226 species 1 2 1 genus 2 532 287 0 Beijerinckia 1 species 533 285 0 Beijerinckia indica family 1 26 0 Bradyrhizobiaceae 7983 41294 46 0 Bradyrhizobium 4289 91 374 genus 11 1 1 species 1355477 548 Bradyrhizobium diazoefficiens 0 species 1 0 Bradyrhizobium icense 260 1274631 6 no rank 2631580 2454 0 1 species 1223566 308 0 Bradyrhizobium sp. CCGE-LA001 species 1 Bradyrhizobium sp. SK17 0 388 2057741 Bradyrhizobium sp. 0 442 376 species 1 1 species 314 115808 0 Bradyrhizobium sp. ORS 285 Bradyrhizobium sp. ORS 278 0 557 114615 species 1 445 288000 0 Bradyrhizobium sp. BTAi1 1 species Bradyrhizobium japonicum 0 375 528 species 1 1 species 44255 408 0 Bradyrhizobium oligotrophicum 157 1 40136 Oligotropha 0 1 2 genus species 1 Oligotropha carboxidovorans 0 40137 156 32 85413 1156 Bosea 0 5 1 genus no rank 3 0 2653178 840 1 species 350 1842539 Bosea sp. RAC05 0 1 species 2015316 292 Bosea sp. AS-1 0 1 species 1792307 198 Bosea sp. PAMC 26642 0 Bosea vaviloviae 0 1526658 284 species 1 1 2 genus 1771 18 1073 0 Rhodopseudomonas 0 Rhodopseudomonas palustris 1753 1076 species 1 genus 1 2 Variibacter 0 1 1649510 209 208 1333996 Variibacter gotjawalensis 0 1 species 0 Nitrobacter 4 911 355 genus 1 3 1 species 913 133 0 Nitrobacter winogradskyi Nitrobacter hamburgensis 0 218 912 species 1 no rank 6 0 119042 847 genus 2 1 Pseudorhodoplanes 0 213 6 1734920 species 1 Pseudorhodoplanes sinuspersici 0 1235591 207 1 2 genus 15 1484898 265 0 Methyloceanibacter Methyloceanibacter caenitepidi 0 1384459 250 species 1 Hartmannibacter 0 5 1572860 369 genus 2 1 1 species 1482074 364 Hartmannibacter diazotrophicus 0 2 family 362 119043 0 Parvibaculum 0 362 15 256616 genus 1 2 1 species 256618 347 0 Parvibaculum lavamentivorans Brucellaceae 0 1965 9 118882 family 1 20 5 1 genus 1209 528 10 Ochrobactrum 0 0 Ochrobactrum pseudogrignonense 295 419475 species 1 Ochrobactrum sp. A44 0 271865 258 species 1 1 species 571256 457 0 Ochrobactrum pituitosum species 1 Ochrobactrum anthropi 0 189 529 747 234 167 0 Brucella 1 14 genus 1 species 120577 41 0 Brucella ceti 0 Brucella suis 122 29461 species 1 species 1 0 Brucella melitensis 29459 42 1 species 235 34 Brucella abortus 0 Brucella vulpis 0 37 981386 species 1 species 1 Brucella microti 0 444163 39 153 2632610 0 4 no rank species 1 Brucella sp. 141012304 0 36 1885919 1 species 1844051 57 0 Brucella sp. 09RB8910 15 1891098 0 Brucella sp. 2002734562 1 species 1 species 45 1149952 0 Brucella sp. 09RB8471 1 species 26 236 Brucella ovis 0 1 species 120576 42 0 Brucella pinnipedialis Brucella canis 0 36855 44 species 1 34 45401 3131 0 Hyphomicrobiaceae 1 18 family 1029 42 81 Hyphomicrobium 0 1 4 genus 235 1427356 Hyphomicrobium nitrativorans 0 1 species 239 53399 0 Hyphomicrobium denitrificans 1 species 2619925 513 0 1 no rank 1 species 717785 513 0 Hyphomicrobium sp. MC1 2 1 genus 29407 8 341 0 Rhodoplanes 0 333 2619116 no rank 1 674703 333 0 Rhodoplanes sp. Z2-YC6860 1 species 1 2 genus 7 119044 226 Filomicrobium 0 0 Candidatus Filomicrobium marinum 1608628 219 species 1 2 1068 201 0 Rhodomicrobium 1 2 genus 1069 199 Rhodomicrobium vannielii 0 1 species genus 1 2 Pelagibacterium 0 5 1082930 205 Pelagibacterium halotolerans 0 200 531813 species 1 0 Devosia 807 46913 26 genus 4 1 no rank 3 0 196773 781 1736675 350 0 Devosia sp. A16 1 species 1 species 155 2083786 Devosia sp. I507 0 1643450 276 Devosia sp. H5989 0 1 species genus 1 0 288 59282 1079 288 Blastochloris viridis 0 1 species 0 1458 2800060 order 6 0 Hyphomonadaceae 1458 12 69657 family 1 6 2723 12 1046 Hirschia 0 2 1 genus 0 Hirschia baltica 2724 1034 species 1 1 3 genus 400 85 18 0 Hyphomonas 209 2630699 0 1 no rank 1 species 209 1906738 Hyphomonas sp. Mor2 0 0 Hyphomonas neptunium 81032 173 species 1 8 no rank 2315 82117 0 0 1384 62654 clade 2 14 767891 1384 0 Candidatus Puniceispirillum 1 2 genus 1 species 767892 1370 Candidatus Puniceispirillum marinum 0 991903 11 309 Polymorphum 0 2 1 genus 1 species 991904 298 0 Polymorphum gilvum genus 1 2 0 Micavibrio 2 213485 261 Micavibrio aeruginosavorus 0 349221 259 species 1 0 Phreatobacter 6 1632780 361 genus 1 2 1 species 355 1868589 Phreatobacter sp. S-12 0 order 2 0 368 2800059 0 2800061 368 family 2 genus 2 1 0 Maricaulis 7 74317 368 1 species 361 74318 Maricaulis maris 0 0 Caulobacterales 3317 204458 28 order 20 1 0 Caulobacteraceae 3289 76892 59 family 1 19 genus 1 2 0 Phenylobacterium 2 20 291 species 1 Phenylobacterium zucineum 0 289 284016 Asticcacaulis 0 173 76890 1 genus 2 1 species 1 0 Asticcacaulis excentricus 78587 172 Caulobacter 0 1374 36 75 genus 1 6 no rank 1 0 2648921 283 283 366602 0 Caulobacter sp. K31 1 species 155892 467 0 Caulobacter vibrioides 1 species Caulobacter mirabilis 0 69666 204 species 1 Caulobacter henricii 0 69395 174 species 1 1 species 210 88688 Caulobacter segnis 0 1202 41275 50 Brevundimonas 0 1 7 genus no rank 3 0 2622653 532 1 species 255 1938605 0 Brevundimonas sp. LM2 1532555 160 Brevundimonas sp. DS20 0 1 species 117 1827469 0 Brevundimonas sp. GW460-12-10-14-LB2 1 species Brevundimonas subvibrioides 0 274 74313 species 1 194 588932 0 Brevundimonas naejangsanensis 1 species 152 41276 0 Brevundimonas vesicularis 1 species no rank 1 0 190 81440 0 Caulobacteraceae bacterium OTSz_A_272 1759059 190 species 1 Parvularculales 0 2 255473 391 order 4 1 family 3 1 0 Parvularculaceae 9 255474 389 2 1 genus 380 11 208215 Parvularcula 0 1 species 208216 369 Parvularcula bermudensis 0 87 1 order 19724 80 204455 Rhodobacterales 0 19644 308 31989 0 Rhodobacteraceae 1 86 family 1 119541 312 0 Rhodobaca 1 2 genus 311 441209 0 Rhodobaca barguzinensis 1 species 1244 31 53945 Octadecabacter 0 1 4 genus 1 species 1458307 326 Octadecabacter temperatus 0 Octadecabacter antarcticus 0 1217908 460 species 1 53946 427 0 Octadecabacter arcticus 1 species 1937 265 23 0 Paracoccus 9 1 genus 0 Paracoccus aminovorans 227 34004 species 1 34003 185 0 Paracoccus aminophilus 1 species Paracoccus sp. CBA4604 0 285 2065379 species 1 species 1 0 Paracoccus denitrificans 266 279 152 1945662 0 Paracoccus contaminans 1 species 284 147645 Paracoccus yeei 0 1 species 208 1077935 Paracoccus zhejiangensis 0 1 species 0 246570 294 no rank 1 Paracoccus sp. BM15 0 294 1529068 species 1 1649279 387 0 1 genus 1 species 387 379347 0 Ruegeria mobilis genus 2 1 Marinovum 0 1 367771 361 Marinovum algicola 0 42444 360 species 1 831 34008 16 Rhodovulum 0 1 4 genus no rank 2 0 452 2631432 1 species 308754 224 Rhodovulum sp. MB263 0 1564506 228 Rhodovulum sp. P5 0 1 species 1 species 363 35806 0 Rhodovulum sulfidophilum Rhodobacter 0 1060 20 1382 genus 5 1 505 196779 0 2 no rank species 1 Rhodobacter sp. CZR27 0 250 2033869 0 Rhodobacter sp. LPB0142 255 1850250 species 1 1 species 609 1063 Rhodobacter sphaeroides 0 species 1 Rhodobacter capsulatus 0 1061 248 2 no rank 58840 403 0 Rhodobacteraceae bacterium QY30 0 2033435 117 species 1 species 1 Rhodobacteraceae bacterium 0 286 1904441 genus 1 3 0 Ruegeria 10 97050 469 2625375 206 0 1 no rank 0 Ruegeria sp. TM1040 206 292414 species 1 89184 253 0 Ruegeria pomeroyi 1 species 353 1 1609958 0 Confluentimicrobium 1 2 genus 2643318 352 0 1 no rank 1609966 352 Confluentimicrobium sp. EMB200-NS6 0 1 species 285107 180 0 1 genus 0 Thioclava nitratireducens 1915078 180 species 1 Pelagibaca 0 347 360528 1 genus 2 1 Pelagibaca abyssi 0 1250539 346 species 1 genus 1 3 Ketogulonicigenium 0 391 92944 8 191 92945 Ketogulonicigenium vulgare 0 1 species species 1 0 Ketogulonicigenium robustum 192 92947 2 1 genus 699 1 1284657 0 Planktomarina 698 1284658 0 Planktomarina temperata 1 species genus 3 1 Sulfitobacter 0 666 60136 3 1 no rank 360 196795 0 Sulfitobacter sp. AM1-D1 0 360 1917485 species 1 Sulfitobacter pseudonitzschiae 0 303 1402135 species 1 2433 16 725 Roseobacter 0 1 3 genus 317 2434 Roseobacter denitrificans 0 1 species species 1 Roseobacter litoralis 0 42443 392 Celeribacter 0 875170 9 1600 genus 1 5 1 species 268 1758178 0 Celeribacter ethanolicus 580 1411902 0 Celeribacter manganoxidans 1 species 1 species 1208324 441 0 Celeribacter indicus species 1 0 Celeribacter marinus 1397108 302 genus 1 0 1097466 212 1 species 212 1335048 0 Defluviimonas alba 1 genus 299261 254 0 species 1 Tateyamaria omphalii 0 299262 254 74030 1 274 Roseovarius 0 1 2 genus species 1 Roseovarius mucosus 0 215743 273 0 Labrenzia 19 478070 666 genus 1 4 430 2648686 0 2 no rank 1 species 1674922 205 0 Labrenzia sp. CP4 2021862 225 Labrenzia sp. VG12 0 1 species species 1 Labrenzia aggregata 0 187304 217 genus 1 2 0 Antarctobacter 319 74032 5 species 1 0 Antarctobacter heliothermus 74033 314 Phaeobacter 0 23 302485 2167 genus 1 5 0 Phaeobacter piscinae 1580596 456 species 1 531 60890 Phaeobacter gallaeciensis 0 1 species species 1 Phaeobacter porticola 0 200 1844006 0 Phaeobacter inhibens 221822 957 species 1 genus 1 0 194 191028 133924 194 Leisingera methylohalidivorans 0 1 species 1 159345 276 0 Roseibacterium 2 1 genus 0 Roseibacterium elongatum 159346 275 species 1 2 1 genus 2 188905 214 Jannaschia 0 1 no rank 2645469 212 0 1 species 290400 212 Jannaschia sp. CCS1 0 2 1 genus 544 1 1579315 0 Halocynthiibacter 1579316 543 0 Halocynthiibacter arcticus 1 species 0 Loktanella 2 245186 genus 1 1 genus 245 1759396 0 2622455 245 0 1 no rank 1 species 245 1920883 0 Marivivens sp. JLT3646 254 309512 0 1 genus Dinoroseobacter shibae 0 215813 254 species 1 0 256 2211641 genus 1 1 species 245188 256 Loktanella vestfoldensis 0 2 1 genus 1 58842 323 0 Sagittula 0 2624628 322 no rank 1 322 2009329 0 Sagittula sp. P11 1 species genus 2 1 0 Pannonibacter 1 227873 234 Pannonibacter phragmitetus 0 233 121719 species 1 615 263377 0 2 genus 1 no rank 2640570 327 0 1 species 327 1792508 0 Yangia sp. CCB-MM3 288 1229727 Thiobacimonas profunda 0 1 species order 1 9 Pelagibacterales 0 54526 50 211913 family 6 1 Pelagibacteraceae 0 52 1655514 200660 0 Candidatus Pelagibacter 23 198251 102641 genus 3 1 no rank 1 0 2647897 10617 1 species 1002672 10617 Candidatus Pelagibacter sp. IMCC9063 0 0 Candidatus Pelagibacter ubique 198252 92001 species 1 1655516 97967 0 2 no rank species 1 0 alpha proteobacterium HIMB5 859653 92123 1 species 5844 744985 alpha proteobacterium HIMB59 0 2 1 genus 11203 14 2045213 Candidatus Fonsibacter 0 1 species 11189 1925548 Candidatus Fonsibacter ubiquis 0 order 8 1 Holosporales 0 6 1921002 2317 44746 838 0 1 family 0 838 204454 no rank 1 species 1 endosymbiont of Acanthamoeba sp. UWC8 0 86106 838 Candidatus Paracaedibacteraceae 0 5 1777752 616 family 3 1 2 1521255 611 Candidatus Paracaedibacter 0 2 1 genus 1 species 609 91604 0 Candidatus Paracaedibacter acanthamoebae family 1 3 0 Caedimonadaceae 6 2100208 857 Candidatus Nucleicultrix 0 851 11 1509243 genus 2 1 0 Candidatus Nucleicultrix amoebiphila 1509244 840 species 1 5 1191478 306 Magnetococcales 0 1 3 order family 2 0 301 1191479 2 1 genus 301 1 162171 0 Magnetococcus species 1 Magnetococcus marinus 0 300 1124597 1 55 order 26278 55 766 Rickettsiales 0 1 no rank 1834 1699067 0 0 Rickettsiales bacterium Ac37b 1528098 1834 species 1 12687 41 942 Anaplasmataceae 0 1 23 family genus 4 1 Neorickettsia 0 16 33993 806 247 33994 Neorickettsia helminthoeca 0 1 species 1 species 240 951 0 Neorickettsia sennetsu species 1 Neorickettsia risticii 0 303 950 11 768 530 0 Anaplasma 4 1 genus 1 species 134 769 Anaplasma centrale 0 1 species group 245 106179 0 1 species 245 948 Anaplasma phagocytophilum 0 species 1 Anaplasma marginale 0 140 770 tribe 8 0 952 5566 953 133 5566 Wolbachia 0 8 1 genus no rank 7 0 2640676 5433 1 species 1474 77038 0 Wolbachia endosymbiont of Drosophila simulans 600 246273 0 Wolbachia endosymbiont of Cimex lectularius 1 species species 1 0 Wolbachia endosymbiont of Onchocerca ochengi 668 100901 0 Wolbachia sp. wRi 705 66084 species 1 0 Wolbachia endosymbiont of Drosophila melanogaster 163164 668 species 1 species 1 Wolbachia endosymbiont of Brugia malayi 0 650 80849 Wolbachia endosymbiont of Onchocerca volvulus 0 668 77551 species 1 6 1 genus 5744 61 943 0 Ehrlichia 106178 4619 0 4 species group 1 species 779 1248 Ehrlichia ruminantium 0 944 1244 0 Ehrlichia canis 1 species species 1 Ehrlichia muris 0 1084 35795 Ehrlichia chaffeensis 0 945 1043 species 1 1064 106181 0 1 no rank 0 Ehrlichia sp. HF 1064 391036 species 1 0 1328881 775 family 2 genus 1 2 Candidatus Midichloria 0 11 411566 775 764 234827 Candidatus Midichloria mitochondrii 0 1 species family 28 1 Rickettsiaceae 0 10927 775 16 Candidatus Phycorickettsia 0 729 5 2115980 genus 2 1 1 species 724 2115978 0 Candidatus Phycorickettsia trachydisci 0 33988 10182 tribe 25 1538 2 69474 Orientia 0 1 2 genus 1536 784 Orientia tsutsugamushi 0 1 species genus 23 1 0 Rickettsia 8644 780 832 2 species group 114292 2021 0 1015 782 Rickettsia prowazekii 0 1 species Rickettsia typhi 0 785 1006 species 1 2 species group 1129742 1753 0 33990 1097 0 Rickettsia bellii 1 species 1 species 656 788 0 Rickettsia canadensis 929 114295 0 1 no rank species 1 Rickettsia endosymbiont of Bemisia tabaci 0 929 337479 17 species group 114277 3109 0 1 species 787 557 0 Rickettsia australis 150 33989 Rickettsia amblyommatis 0 1 species 1 species 53 781 0 Rickettsia conorii Rickettsia slovaca 0 40 35794 species 1 1 species 54 35788 0 Rickettsia africae 1 species 783 103 0 Rickettsia rickettsii 1 species 35791 89 0 Rickettsia massiliae species 1 Rickettsia monacensis 0 109232 286 427 786 0 Rickettsia akari 1 species 1 species 1105106 74 Rickettsia philipii 0 0 Rickettsia rhipicephali 141 33992 species 1 species 1 Rickettsia montanensis 0 81 33991 0 Rickettsia peacockii 47589 280 species 1 species 1 Rickettsia heilongjiangensis 0 122 226665 113 35790 Rickettsia japonica 0 1 species species 1 0 Rickettsia felis 42862 479 0 Rickettsia parkeri 35792 60 species 1 79 204441 15059 Rhodospirillales 0 65 1 order 5787 433 30 Acetobacteraceae 0 33 1 family 515 15 522 0 Acidiphilium 1 3 genus 1 species 524 230 0 Acidiphilium cryptum species 1 0 Acidiphilium multivorum 62140 270 2523 434 11 0 Acetobacter 1 8 genus 1 species 241 446692 Acetobacter senegalensis 0 0 Acetobacter pomorum 195 65959 species 1 subgenus 1 0 126 151157 species 1 0 Acetobacter aceti 435 126 1 species 1633874 502 0 Acetobacter oryzifermentans 1 species 351 104102 Acetobacter tropicalis 0 1 species 921 438 0 Acetobacter pasteurianus 1076596 176 Acetobacter persici 0 1 species 1 89583 163 Gluconacetobacter 0 1 2 genus 1 species 162 33996 Gluconacetobacter diazotrophicus 0 genus 2 1 0 Neoasaia 320496 3 117 0 Neoasaia chiangmaiensis 114 320497 species 1 156 3 91914 Asaia 0 1 2 genus 91915 153 0 Asaia bogorensis 1 species 15 125216 583 0 Roseomonas 3 1 genus 274 257708 0 Roseomonas gilardii 1 species 1 no rank 294 2617492 0 1 species 2018065 294 0 Roseomonas sp. FDAARGOS_362 1 genus 153497 169 0 species 1 Kozakia baliensis 0 153496 169 417 441 5 0 Gluconobacter 1 3 genus 148 318683 Gluconobacter albidus 0 1 species 1 species 264 442 0 Gluconobacter oxydans 1 genus 1602345 152 0 1 species 152 1510841 Parasaccharibacter apium 0 293 2 364409 Granulibacter 0 2 1 genus Granulibacter bethesdensis 0 364410 291 species 1 669 1434011 25 0 Komagataeibacter 5 1 genus 1177712 140 Komagataeibacter medellinensis 0 1 species 0 Komagataeibacter europaeus 90 33995 species 1 Komagataeibacter xylinus 0 232 28448 species 1 Komagataeibacter nataicola 0 265960 182 species 1 9193 91 41295 Rhodospirillaceae 0 1 31 family genus 1 2 0 Haematospirillum 1 1804663 236 species 1 0 Haematospirillum jordaniae 1549855 235 13134 77 1864 0 Magnetospirillum 5 1 genus 899 2617991 0 2 no rank 0 Magnetospirillum sp. ME-1 1639348 476 species 1 423 1663591 Magnetospirillum sp. XM-1 0 1 species 84159 438 0 Magnetospirillum magneticum 1 species 0 Magnetospirillum gryphiswaldense 55518 450 species 1 Candidatus Endolissoclinum 0 1726 1263978 5 genus 2 1 Candidatus Endolissoclinum faulkneri 0 1263979 1721 species 1 191 41 2270 0 Azospirillum 5 1 genus species 1 0 Azospirillum lipoferum 831 193 1 species 428 528244 Azospirillum thiophilum 0 233 1226968 0 Azospirillum humicireducens 1 species Azospirillum brasilense 0 192 737 species 1 Tistrella 0 171436 18 528 genus 2 1 510 171437 Tistrella mobilis 0 1 species Thalassospira 0 789 168934 9 genus 3 1 395 2048283 0 Thalassospira sp. CSC3H3 1 species species 1 0 Thalassospira xiamenensis 385 220697 268 1182780 9 0 Magnetospira 1 2 genus 259 2685734 0 1 no rank species 1 0 Magnetospira sp. QH-2 259 1288970 genus 2 1 0 Nitrospirillum 358 1 1543705 species 1 0 Nitrospirillum amazonense 357 28077 1081 7 604 0 Rhodospirillum 3 1 genus species 1 Rhodospirillum centenum 0 333 34018 species 1 0 Rhodospirillum rubrum 264 1085 216 7 1612157 Pararhodospirillum 0 2 1 genus 1 species 209 1084 0 Pararhodospirillum photometricum 243 1543704 2 Niveispirillum 0 2 1 genus 241 1612173 0 Niveispirillum cyanobacteriorum 1 species 0 1807140 787 class 6 Acidithiobacillales 0 787 21 225057 order 1 6 1 5 family 225058 14 766 0 Acidithiobacillaceae genus 4 1 0 Acidithiobacillus 752 23 119977 Acidithiobacillus caldus 0 327 33059 species 1 920 164 Acidithiobacillus ferrooxidans 0 1 species 0 Acidithiobacillus ferrivorans 238 160808 species 1 1 900 class 695 1236 378937 Gammaproteobacteria 0 14 no rank 118884 23034 0 1 3 genus 655184 21 17691 Candidatus Thioglobus 0 1705394 1049 Candidatus Thioglobus autotrophicus 0 1 species 0 Candidatus Thioglobus singularis 16621 1427364 species 1 Sedimenticola 0 349742 1 365 genus 2 1 1543721 364 Sedimenticola thiotaurini 0 1 species 1 clade 198346 1347 0 species 1 0 Candidatus Baumannia cicadellinicola 1347 186490 1 2 genus 4 1524249 320 0 Pseudohongiella 1249552 316 0 Pseudohongiella spirulinae 1 species Thiolapillus 0 6 1608298 215 genus 2 1 1 species 209 1076588 0 Thiolapillus brandeum clade 4 0 3096 32036 Bathymodiolus septemdierum thioautotrophic gill symbiont 0 877 113267 species 1 Candidatus Ruthia 0 936 4 1541743 genus 1 2 1 species 386487 932 Candidatus Ruthia magnifica 0 1 species 1283 410330 0 Calyptogena okutanii thioautotrophic gill symbiont 135624 48 6479 Aeromonadales 0 28 1 order 6431 68 84642 0 Aeromonadaceae 27 1 family 4 43947 190 0 Tolumonas 2 1 genus Tolumonas auensis 0 186 43948 species 1 genus 1 0 129577 174 no rank 1 0 174 2636315 1 species 511062 174 0 Oceanimonas sp. GK1 6 225143 516 0 Oceanisphaera 3 1 genus species 1 0 Oceanisphaera sp. AMac2203 258 1903694 1416627 252 0 Oceanisphaera profunda 1 species 18 1 genus 642 175 5184 0 Aeromonas 0 Aeromonas rivipollensis 81 948519 species 1 0 Aeromonas dhakensis 159 196024 species 1 species 1 0 Aeromonas aquatica 210 558964 0 Aeromonas caviae 648 94 species 1 species 1 Aeromonas schubertii 0 652 142 1134 645 Aeromonas salmonicida 0 1 species 114 651 0 Aeromonas media 1 species 1 species 644 1063 Aeromonas hydrophila 0 8 no rank 257493 1577 0 Aeromonas sp. ASNIH1 0 1636606 483 species 1 species 1 0 Aeromonas sp. ASNIH5 1758179 147 1636609 251 Aeromonas sp. ASNIH4 0 1 species species 1 Aeromonas sp. CA23 0 2033032 185 species 1 Aeromonas sp. ASNIH3 0 1636608 107 species 1 Aeromonas sp. CU5 0 2033033 153 0 Aeromonas sp. ASNIH7 1920107 123 species 1 1636607 128 Aeromonas sp. ASNIH2 0 1 species species 1 0 Aeromonas veronii 654 435 299 6 347533 0 Zobellella 1 2 genus species 1 Zobellella denitrificans 0 293 347534 order 29 1 0 Cellvibrionales 5470 24 1706369 6 1 family 17 1706375 1268 0 Spongiibacteraceae 2 1 genus 296 630749 2 0 Spongiibacter no rank 1 0 2631504 294 1 species 1620392 294 0 Spongiibacter sp. IMCC21906 Zhongshania 0 5 1434050 332 genus 1 2 1 species 327 1470434 Zhongshania aliphaticivorans 0 0 1084558 623 genus 1 623 716816 Oceanicoccus sagamiensis 0 1 species 559 4 1706372 0 Halieaceae 4 1 family genus 3 1 0 Halioglobus 555 1217416 12 Halioglobus pacificus 0 930806 281 species 1 species 1 Halioglobus japonicus 0 262 930805 family 13 1 0 Cellvibrionaceae 13 1706371 2737 genus 1 2 0 Simiduia 228 447467 2 1 species 447471 226 0 Simiduia agarivorans 0 Agarilytica 2036021 1 860 genus 1 2 species 1 Agarilytica rhodophyticola 0 1737490 859 genus 1 4 0 Cellvibrio 8 10 873 155077 262 Cellvibrio japonicus 0 1 species 2 no rank 2624793 603 0 1 species 1945512 321 0 Cellvibrio sp. PSBB023 1 species 282 1987723 0 Cellvibrio sp. PSBB006 genus 2 1 0 Teredinibacter 2425 5 300 Teredinibacter turnerae 0 295 2426 species 1 3 316625 463 Saccharophagus 0 2 1 genus 1 species 86304 460 0 Saccharophagus degradans 5 1706373 882 Microbulbiferaceae 0 1 5 family 4 1 genus 877 48073 17 0 Microbulbifer Microbulbifer aggregans 0 302 1769779 species 1 Microbulbifer agarilyticus 0 232 260552 species 1 1 species 252514 326 0 Microbulbifer thermotolerans 21 1 order 13130 7 118969 0 Legionellales family 5 1 0 Coxiellaceae 1655 46 118968 0 526 134284 no rank 1 1 species 1592897 526 Coxiella-like endosymbiont 0 genus 3 1 Coxiella 0 28 776 1083 no rank 1 0 2676648 579 1 species 325775 579 Coxiella endosymbiont of Amblyomma americanum 0 species 1 0 Coxiella burnetii 777 476 1 15 family 11468 444 23 Legionellaceae 0 genus 12 1 Legionella 0 10782 77 445 655 449 0 Legionella hackeliae 1 species 1 species 29423 523 0 Legionella oakridgensis 1 species 450 1061 0 Legionella longbeachae 1 species 2005262 1098 Legionella endosymbiont of Polyplax serrata 0 0 Legionella fallonii 96230 999 species 1 Legionella sainthelensi 0 1037 28087 species 1 species 1 0 Legionella lansingensis 45067 583 0 Legionella waltersii 828 66969 species 1 1 species 631 1867846 0 Legionella clemsonensis Legionella pneumophila 0 446 2952 species 1 1 species 338 452 Legionella spiritensis 0 genus 1 2 Tatlockia 0 2 465 663 1 species 661 451 Tatlockia micdadei 0 13 1 order 2290 15 135618 0 Methylococcales family 1 12 Methylococcaceae 0 17 403 2275 0 Methylococcus 176 8 413 genus 1 2 Methylococcus capsulatus 0 414 168 species 1 Methylomicrobium 0 579 39773 3 genus 2 1 species 1 Methylomicrobium alcaliphilum 0 576 271065 0 Methylomonas 1255 38 416 genus 1 5 0 2608980 227 no rank 1 1 species 1727196 227 0 Methylomonas sp. DH-1 species 1 0 Methylomonas denitrificans 1538553 563 702114 190 Methylomonas koyamae 0 1 species species 1 Methylomonas methanica 0 237 421 248 3 762296 Methylovulum 0 1 2 genus 0 Methylovulum psychrotolerans 245 1704499 species 1 51 1 order 10377 82 135613 Chromatiales 0 0 Ectothiorhodospiraceae 72276 35 2863 family 18 1 genus 1 2 Ectothiorhodospira 0 219 1051 18 2684909 201 0 1 no rank 0 Ectothiorhodospira sp. BSL-9 1442136 201 species 1 231 2 133193 0 Alkalilimnicola 2 1 genus 351052 229 Alkalilimnicola ehrlichii 0 1 species Thioalkalivibrio 0 1284 33 106633 genus 1 6 Thioalkalivibrio versutus 0 199 106634 species 1 no rank 1 0 2621013 219 1 species 219 396595 0 Thioalkalivibrio sp. K90mix species 1 0 Thioalkalivibrio nitratireducens 253 186931 1 species 325 1033854 Thioalkalivibrio sulfidiphilus 0 Thioalkalivibrio paradoxus 0 108010 255 species 1 Halorhodospira 0 216 6 85108 genus 2 1 210 1053 0 Halorhodospira halophila 1 species 3 1 genus 1335745 12 476 0 Spiribacter species 1 Spiribacter curvatus 0 247 1335757 species 1 0 Spiribacter salinus 217 1335746 1 2 genus 1 1765964 402 0 Acidihalobacter 401 160660 Acidihalobacter prosperus 0 1 species family 1 4 0 Halothiobacillaceae 3 255526 351 0 Halothiobacillus 8 109262 348 genus 3 1 species 1 0 Halothiobacillus neapolitanus 191 927 1 no rank 149 2636392 0 1 species 1860122 149 0 Halothiobacillus sp. LS2 451214 249 0 2 no rank genus 2 1 0 Thiohalobacter 249 6 1273155 species 1 Thiohalobacter thiocyanaticus 0 585455 243 family 1 3 Granulosicoccaceae 0 449719 9 715 0 Granulosicoccus 706 16 437504 genus 1 2 437505 690 Granulosicoccus antarcticus 0 1 species 0 491 1738654 family 2 0 Woeseia 491 18 1738655 genus 1 2 species 1 Woeseia oceani 0 473 1548547 1676141 1 534 Wenzhouxiangellaceae 0 1 3 family 533 11 1676142 0 Wenzhouxiangella 2 1 genus Wenzhouxiangella marina 0 522 1579979 species 1 37 1046 5092 0 Chromatiaceae 1 18 family 2 1 genus 379 13724 3 Thiocystis 0 species 1 Thiocystis violascens 0 376 73141 genus 4 1 0 Nitrosococcus 1227 13 1304 0 Nitrosococcus watsonii 473531 723 species 1 Nitrosococcus halophilus 0 260 133539 species 1 0 Nitrosococcus oceani 308 1229 species 1 8 1980513 542 Candidatus Nitrosoglobus 0 2 1 genus 0 Candidatus Nitrosoglobus terrae 1630141 534 species 1 2 1 genus 1802 53392 11 0 Thiodictyon species 1 0 Candidatus Thiodictyon syntrophicum 1791 1166950 336 1 85076 Marichromatium 0 1 2 genus 0 Marichromatium purpuratum 335 37487 species 1 82569 177 0 1 no rank 177 1978339 0 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 species 2 1 genus 233 4 85072 0 Allochromatium species 1 0 Allochromatium vinosum 1049 229 0 Thioflavicoccus 282 4 156885 genus 2 1 1 species 278 80679 Thioflavicoccus mobilis 0 order 1 128 0 Pseudomonadales 185 72274 59014 45 468 27704 Moraxellaceae 0 42 1 family Moraxella 0 475 35 2180 genus 5 1 species 1 0 Moraxella bovoculi 385 386891 34062 897 Moraxella osloensis 0 1 species 480 631 0 Moraxella catarrhalis 1 species 1 species 29433 232 Moraxella ovis 0 genus 1 11 Psychrobacter 0 95 497 5467 261164 687 Psychrobacter alimentarius 0 1 species 1 species 410 330922 Psychrobacter cryohalolentis 0 Psychrobacter arcticus 0 385 334543 species 1 no rank 6 0 196806 3489 1 species 457 1699622 Psychrobacter sp. P2G3 0 560 1699624 Psychrobacter sp. P11G5 0 1 species species 1 Psychrobacter sp. G 0 571800 408 1720344 991 Psychrobacter sp. AntiMn-1 0 1 species 0 Psychrobacter sp. DAB_AL43B 434 1028416 species 1 1 species 639 349106 0 Psychrobacter sp. PRwf-1 0 Psychrobacter urativorans 401 45610 species 1 Acinetobacter 0 20012 469 194 genus 1 25 1324350 952 0 Acinetobacter equi 1 species 108981 545 0 Acinetobacter schindleri 1 species 202950 601 0 1 species 1 strain 601 62977 0 Acinetobacter sp. ADP1 species 1 Acinetobacter bereziniae 0 106648 689 species 1 0 Acinetobacter larvae 485 1789224 811 40215 Acinetobacter junii 0 1 species 1 species 434 40214 0 Acinetobacter johnsonii 196816 3528 0 7 no rank species 1 0 Acinetobacter sp. TTH0-4 1646498 607 2079596 444 0 Acinetobacter sp. SWBY1 1 species 1 species 591 1758189 0 Acinetobacter sp. ACNIH2 321 1808001 0 Acinetobacter sp. LoGeW2-3 1 species species 1 0 Acinetobacter sp. NCu2D-2 1608473 423 species 1 Acinetobacter sp. ACNIH1 0 1636603 687 1 species 455 1407071 0 Acinetobacter sp. TGL-Y2 Acinetobacter soli 0 487316 395 species 1 756892 307 Acinetobacter indicus 0 1 species 1148157 694 0 Acinetobacter oleivorans 1 species species 1 0 Acinetobacter haemolyticus 29430 711 1 species 432 40216 Acinetobacter radioresistens 0 909768 9234 0 5 species group 1 species 106654 958 0 Acinetobacter nosocomialis 1 species 48296 3238 0 Acinetobacter pittii species 1 0 Acinetobacter lactucae 1785128 715 1 species 470 3071 0 Acinetobacter baumannii 1252 471 0 Acinetobacter calcoaceticus 1 species family 1 85 Pseudomonadaceae 0 31125 170 135621 2 subfamily 351 763 0 0 763 352 genus 2 1 species 354 222 0 Azotobacter vinelandii 541 353 Azotobacter chroococcum 0 1 species 411 2 1849530 0 Oblitimonas 2 1 genus Oblitimonas alkaliphila 0 1697053 409 species 1 0 Pseudomonas 555 286 29781 genus 1 80 2 species group 2311 136846 0 2177 578833 0 1 species subgroup species 1 0 Pseudomonas stutzeri 2177 316 species 1 Pseudomonas balearica 0 134 74829 species 1 Pseudomonas rhizosphaerae 0 136 216142 9 species group 5471 136843 0 species 1 0 Pseudomonas azotoformans 47878 954 species 1 Pseudomonas fluorescens 0 294 3261 122 76761 0 Pseudomonas veronii 1 species species 1 0 Pseudomonas corrugata 120 47879 380021 289 0 Pseudomonas protegens 1 species 200450 384 Pseudomonas trivialis 0 1 species 1 species 76758 106 Pseudomonas orientalis 0 Pseudomonas poae 0 96 200451 species 1 species 1 Pseudomonas mandelii 0 75612 139 0 136841 3891 species group 6 Pseudomonas citronellolis 0 53408 450 species 1 0 Pseudomonas alcaligenes 228 43263 species 1 0 Pseudomonas resinovorans 53412 195 species 1 species subgroup 1 0 1232139 336 336 1149133 Pseudomonas furukawaii 0 1 species 1 species 1973 287 0 Pseudomonas aeruginosa 0 Pseudomonas mendocina 300 709 species 1 species 1 Pseudomonas entomophila 0 312306 147 0 Pseudomonas antarctica 219572 137 species 1 species 1 Pseudomonas brassicacearum 0 323 930166 1 species 101564 188 Pseudomonas alcaliphila 0 Pseudomonas koreensis 0 357 198620 species 1 207 1583341 0 Pseudomonas cerasi 1 species species 1 Pseudomonas versuta 0 122 1788301 0 136849 2887 species group 8 species subgroup 1 0 251695 1451 317 1451 Pseudomonas syringae 0 1 species species 1 Pseudomonas viridiflava 0 33069 91 1 species 46257 116 Pseudomonas avellanae 0 species subgroup 2 0 251698 449 29438 272 0 Pseudomonas savastanoi 1 species 1 species 177 47877 0 Pseudomonas amygdali no rank 1 0 2775504 143 1 species 1206777 143 Pseudomonas sp. Lz4W 0 1 species 503 251701 0 Pseudomonas syringae group genomosp. 3 1 species 36746 134 0 Pseudomonas cichorii species 1 Pseudomonas frederiksbergensis 0 485 104087 0 Pseudomonas cremoricolorata 133 157783 species 1 species 1 Pseudomonas psychrotolerans 0 284 237610 237609 104 Pseudomonas alkylphenolica 0 1 species 0 4066 136845 species group 6 species 1 Pseudomonas oryzihabitans 0 196 47885 species 1 Pseudomonas putida 0 303 2304 78327 670 Pseudomonas mosselii 0 1 species species 1 0 Pseudomonas monteilii 517 76759 species 1 0 Pseudomonas plecoglossicida 152 70775 1 species 47880 227 Pseudomonas fulva 0 30 no rank 196821 5202 0 species 1 0 Pseudomonas sp. DR 5-09 170 1534110 Pseudomonas sp. SWI6 0 2083051 127 species 1 1 species 172 1500687 0 Pseudomonas sp. St29 1283291 298 0 Pseudomonas sp. URMO17WK12:I11 1 species 0 Pseudomonas sp. FDAARGOS_380 2018067 104 species 1 1 species 2069256 166 Pseudomonas sp. XWY-1 0 Pseudomonas sp. GR 6-02 0 197 1659194 species 1 species 1 0 Pseudomonas sp. MRSN12121 183 1611770 0 Pseudomonas sp. LG1D9 130 2083054 species 1 1 species 116 69328 Pseudomonas sp. VLB120 0 142 1338689 0 Pseudomonas sp. JY-Q 1 species 0 Pseudomonas sp. LPH1 1898684 168 species 1 1 species 203 2067572 0 Pseudomonas sp. NC02 Pseudomonas sp. MYb193 0 111 1827300 species 1 1 species 1259844 137 Pseudomonas sp. FGI182 0 1 species 196 1294143 0 Pseudomonas sp. ATCC 13867 0 Pseudomonas sp. SWI44 126 2083053 species 1 0 Pseudomonas sp. SWI36 2083052 155 species 1 166 1028989 Pseudomonas sp. StFLB209 0 1 species 1981174 188 0 Pseudomonas sp. M30-35 1 species 1 species 171 1500686 0 Pseudomonas sp. Os17 2083055 132 Pseudomonas sp. LH1G9 0 1 species 1 species 365 1930532 0 Pseudomonas sp. CC6-YY-74 Pseudomonas sp. TCU-HL1 0 1856685 201 species 1 0 Pseudomonas sp. TKP 338 1415630 species 1 160 1636610 0 Pseudomonas sp. PONIH3 1 species 0 Pseudomonas sp. UW4 1207075 123 species 1 1 species 160 1649877 0 Pseudomonas sp. CCOS 191 0 Pseudomonas sp. HLS-6 124 2049589 species 1 173 1931241 Pseudomonas sp. S-6-2 0 1 species species 1 Pseudomonas silesiensis 0 1853130 489 1 species 244566 120 0 Pseudomonas lurida 136842 1631 0 2 species group 1 species 1022 587753 Pseudomonas chlororaphis 0 1 species 296 609 0 Pseudomonas fragi 308 157782 Pseudomonas parafulva 0 1 species 65741 227 Pseudomonas knackmussii 0 1 species order 1 4 0 Nevskiales 278 10 1775403 1 family 1 568386 0 Sinobacteraceae 2 family 267 2689614 0 2 1 genus 14 469322 267 0 Steroidobacter species 1 0 Steroidobacter denitrificans 253 465721 order 33 1 0 Pasteurellales 10911 14 135625 1 32 family 10897 67 712 Pasteurellaceae 0 genus 2 1 Gallibacterium 0 3 155493 411 408 750 0 Gallibacterium anatis 1 species 1 2 genus 480 476528 2 Bibersteinia 0 Bibersteinia trehalosi 0 478 47735 species 1 genus 1 2 0 Histophilus 1 214906 784 1 species 783 731 0 Histophilus somni genus 1 2 Basfia 0 153 3 697331 1 species 157673 150 0 [Mannheimia] succiniciproducens 1 4 genus 1260 4 75984 Mannheimia 0 species 1 Mannheimia haemolytica 0 75985 369 no rank 1 0 2645054 337 species 1 0 Mannheimia sp. USDA-ARS-USMARC-1261 337 1432056 species 1 0 Mannheimia varigena 550 85404 Haemophilus 0 3526 24 724 genus 1 6 0 2609962 367 no rank 1 species 1 0 Haemophilus sp. oral taxon 036 367 712310 species 1 0 [Haemophilus] ducreyi 721 730 727 1823 Haemophilus influenzae 0 1 species species 1 Haemophilus parainfluenzae 0 328 729 249188 263 0 Haemophilus pittmaniae 1 species 1 5 genus 940 8 713 Actinobacillus 0 145 67854 Actinobacillus succinogenes 0 1 species 0 Actinobacillus suis 716 256 species 1 Actinobacillus pleuropneumoniae 0 715 258 species 1 273 718 0 Actinobacillus equuli 1 species 684 6 416916 Aggregatibacter 0 3 1 genus Aggregatibacter actinomycetemcomitans 0 308 714 species 1 species 1 0 Aggregatibacter aphrophilus 732 370 1918 6 745 Pasteurella 0 1 3 genus 533 754 0 Pasteurella dagmatis 1 species 0 Pasteurella multocida 747 1379 species 1 2 1 genus 1 2094023 674 Glaesserella 0 Glaesserella parasuis 0 673 738 species 1 order 6 1 Acidiferrobacterales 0 3 1692040 763 Acidiferrobacteraceae 0 11 1692041 760 family 1 5 1 2 genus 521 5 1692042 Sulfurifustis 0 Sulfurifustis variabilis 0 1675686 516 species 1 Sulfuricaulis 0 10 1744881 228 genus 2 1 1 species 218 1620215 0 Sulfuricaulis limicola 4 1 order 295 1934945 5 0 Immundisolibacterales family 3 1 Immundisolibacteraceae 0 290 3 1934946 genus 2 1 0 Immundisolibacter 6 1934947 287 species 1 Immundisolibacter cernigliae 0 1810504 281 251 1 order 100787 236 91347 Enterobacterales 0 0 Yersiniaceae 1903411 27 11830 family 38 1 13 1 genus 629 64 5305 Yersinia 0 Yersinia ruckeri 0 324 29486 species 1 0 Yersinia intermedia 233 631 species 1 217 2653513 0 1 no rank 1 species 1839800 217 0 Yersinia sp. FDAARGOS_228 1 species 265 29485 Yersinia rohdei 0 263819 206 0 Yersinia aleksiciae 1 species species group 3 0 1649845 1909 1 species 367190 650 0 Yersinia similis 0 Yersinia pseudotuberculosis 633 649 species 1 610 632 Yersinia pestis 0 1 species Yersinia kristensenii 0 308 28152 species 1 1 species 29484 600 0 Yersinia frederiksenii species 1 0 Yersinia aldovae 217 29483 962 630 0 Yersinia enterocolitica 1 species 161 1 1745211 Chania 0 2 1 genus species 1 0 Chania multitudinisentens 1639108 160 Gibbsiella 0 131 929812 1 genus 1 2 929813 130 0 Gibbsiella quercinecans 1 species Serratia 0 613 82 5723 genus 1 16 species 1 0 Serratia fonticola 47917 1621 0 1555 2647522 no rank 8 0 Serratia sp. FGI94 671990 148 species 1 0 Serratia sp. SSNIH1 1758196 152 species 1 1 species 1327989 205 Serratia sp. FS14 0 0 Serratia sp. AS13 100 768493 species 1 104623 200 0 Serratia sp. ATCC 39006 1 species 139 2033438 Serratia sp. MYb239 0 1 species 1 species 511 488142 Serratia sp. SCBI 0 species 1 0 Serratia sp. AS12 100 768490 Serratia plymuthica 0 372 82996 species 1 species 1 Serratia proteamaculans 0 28151 132 61652 179 0 Serratia rubidaea 1 species 158 61651 0 Serratia ficaria 1 species 615 1439 0 Serratia marcescens 1 species 1 species 614 185 Serratia liquefaciens 0 34037 10 483 0 Rahnella 4 1 genus 2 no rank 2635087 337 0 184 1805933 Rouxiella sp. ERMR1:05 0 1 species 1 species 741091 153 0 Rahnella sp. Y9602 136 34038 0 Rahnella aquatilis 1 species 0 Morganellaceae 7911 1903414 45 family 1 22 0 Morganella 239 2 581 genus 1 2 0 Morganella morganii 237 582 species 1 2 1 genus 894 6 637 0 Arsenophonus species 1 Arsenophonus symbiont of Lipoptena fortisetosa 0 634113 888 genus 6 1 Xenorhabdus 0 1628 626 12 species 1 Xenorhabdus bovienii 0 485 40576 274 40577 Xenorhabdus poinarii 0 1 species Xenorhabdus doucetiae 0 351671 262 species 1 351679 302 0 Xenorhabdus hominickii 1 species 0 Xenorhabdus nematophila 293 628 species 1 3 1 genus 2459 583 12 Proteus 0 1 species 585 746 0 Proteus vulgaris 1 species 584 1701 Proteus mirabilis 0 4 1 genus 1418 586 10 0 Providencia 1 species 126385 312 Providencia alcalifaciens 0 588 560 Providencia stuartii 0 1 species 1 species 587 536 Providencia rettgeri 0 genus 1 4 0 Photorhabdus 29487 9 1228 species 1 Photorhabdus asymbiotica 0 291112 448 1 species 574560 311 Photorhabdus temperata 0 1 species 29488 460 0 Photorhabdus luminescens 0 451511 297 no rank 2 0 Plesiomonas 6 702 297 genus 1 2 1 species 703 291 Plesiomonas shigelloides 0 543 224 38473 Enterobacteriaceae 0 1 123 family 1 genus 579 156 0 156 61648 Kluyvera intermedia 0 1 species 698 4 160674 0 Raoultella 1 3 genus 574 54291 Raoultella ornithinolytica 0 1 species 575 120 0 Raoultella planticola 1 species 0 Lelliottia 553 4 1330545 genus 4 1 1 species 69220 93 Lelliottia nimipressuralis 0 species 1 Lelliottia amnigena 0 61646 345 Lelliottia jeotgali 0 111 1907578 species 1 Enterobacter 0 115 547 5715 genus 22 1 9 no rank 769 2608935 0 species 1 Enterobacter sp. ODB01 0 85 1827481 Enterobacter sp. R4-368 0 124 1166130 species 1 species 1 0 Enterobacter sp. Crenshaw 55 1977566 1 species 1914861 95 Enterobacter sp. SA187 0 1 species 399742 93 Enterobacter sp. 638 0 Enterobacter sp. CRENT-193 0 90 2051905 species 1 1 species 61 1868135 0 Enterobacter sp. HK169 Enterobacter sp. E20 0 59 1560339 species 1 species 1 Enterobacter sp. FY-07 0 1692238 107 354276 4831 0 12 species group species 1 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 59 1812935 species 1 0 Enterobacter cloacae 550 2220 0 Enterobacter cancerogenus 69218 114 species 1 1 species 61645 275 0 Enterobacter asburiae 0 Enterobacter kobei 208224 86 species 1 268 2757714 0 3 no rank species 1 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 87 2077137 1 species 2027919 92 0 Enterobacter cloacae complex bacterium 0 Enterobacter cloacae complex sp. ECNIH7 89 1915310 species 1 158836 1543 1736 0 Enterobacter hormaechei 1 3 species 1 subspecies 51 1296536 0 Enterobacter xiangfangensis Enterobacter cloacae complex 'Hoffmann cluster III' 0 142 1812934 subspecies 1 73 299767 Enterobacter ludwigii 0 1 species 1 8 genus 925 13 413496 Cronobacter 0 Cronobacter turicensis 0 116 413502 species 1 species 1 Cronobacter condimenti 0 1163710 148 413503 91 Cronobacter malonaticus 0 1 species Cronobacter dublinensis 0 413497 108 species 1 114 413501 0 Cronobacter muytjensii 1 species 0 Cronobacter sakazakii 200 28141 species 1 species 1 Cronobacter universalis 0 135 535744 5 1 genus 1330547 4 615 Kosakonia 0 species 1 0 Kosakonia radicincitans 240 283686 1 species 1158459 127 0 Kosakonia sacchari Kosakonia oryzae 0 497725 147 species 1 0 Kosakonia cowanii 97 208223 species 1 409304 2 735 0 Candidatus Ishikawaella 2 1 genus Candidatus Ishikawaella capsulata 0 733 168169 species 1 0 191675 7102 no rank 22 22 clade 84563 7102 0 4 clade 146507 874 0 species 1 0 secondary endosymbiont of Heteropsylla cubana 134287 349 377 2 568987 0 Candidatus Hamiltonella 1 2 genus species 1 0 Candidatus Hamiltonella defensa 375 138072 1 species 148 1199245 0 secondary endosymbiont of Ctenarytaina eucalypti genus 1 2 Candidatus Mikella 0 3 1906660 412 Candidatus Mikella endobia 0 1778264 409 species 1 1 2 genus 1 1906661 380 Candidatus Gullanella 0 1070130 379 0 Candidatus Gullanella endobia 1 species 0 Candidatus Tachikawaea 6 1682492 1069 genus 1 2 species 1 0 Candidatus Tachikawaea gelatinosa 1063 1410383 0 Candidatus Hoaglandella 9 1906659 159 genus 1 2 1778263 150 0 Candidatus Hoaglandella endobia 1 species 2 1 genus 1906657 3 102 Candidatus Doolittlea 0 0 Candidatus Doolittlea endobia 99 1778262 species 1 365 199891 0 1 clade 0 secondary endosymbiont of Trabutina mannipara 1835721 365 species 1 3741 84564 0 7 clade genus 7 1 Candidatus Blochmannia 0 203804 29 3741 1 species 251535 714 Candidatus Blochmannia vafer 0 no rank 2 0 711328 1203 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1505597 564 species 1 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 639 species 1 species 1 Candidatus Blochmannia chromaiodes 0 251542 577 101534 565 Candidatus Blochmannia pennsylvanicus 0 1 species species 1 Candidatus Blochmannia floridanus 0 203907 653 0 Klebsiella 86 570 5435 genus 1 10 0 Klebsiella aerogenes 548 844 species 1 573 2079 0 Klebsiella pneumoniae 1 species 1 species 134 2026240 0 Klebsiella quasivariicola 244366 314 0 Klebsiella variicola 1 species Klebsiella quasipneumoniae 0 1463165 241 species 1 1 species 768 571 0 Klebsiella oxytoca 0 333 2608929 no rank 2 0 Klebsiella sp. M5al 155 1934254 species 1 178 1905288 0 Klebsiella sp. LTGPAF-6F 1 species 1134687 636 Klebsiella michiganensis 0 1 species Salmonella 0 4714 3 590 genus 1 3 species 1 Salmonella enterica 0 28901 4517 194 54736 Salmonella bongori 0 1 species 0 Leclercia 10 83654 421 genus 1 4 species 1 Leclercia adecarboxylata 0 163 83655 2 no rank 248 2627398 0 species 1 0 Leclercia sp. LSNIH3 1920116 113 1920114 135 0 Leclercia sp. LSNIH1 1 species 4 1 genus 254 1 620 Shigella 0 species 1 0 Shigella flexneri 59 623 species 1 0 Shigella dysenteriae 622 138 0 2629414 56 no rank 1 1 species 1813821 56 0 Shigella sp. PAMC 28760 2 158483 518 Cedecea 0 2 1 genus 0 Cedecea neteri 516 158822 species 1 0 Citrobacter 2639 544 74 genus 14 1 2 no rank 207 2644389 0 1 species 103 1920110 Citrobacter sp. CFNIH10 0 1 species 1702170 104 0 Citrobacter sp. FDAARGOS_156 species group 7 0 1406 1344959 215 57706 Citrobacter braakii 0 1 species Citrobacter werkmanii 0 196 67827 species 1 0 Citrobacter freundii 567 546 species 1 species 1 Citrobacter freundii complex sp. CFNIH4 0 2077148 120 2077147 123 Citrobacter freundii complex sp. CFNIH3 0 1 species 0 Citrobacter freundii complex sp. CFNIH2 80 2066049 species 1 2077149 105 0 Citrobacter freundii complex sp. CFNIH9 1 species 1 species 262 35703 0 Citrobacter amalonaticus species 1 Citrobacter koseri 0 545 144 67825 133 Citrobacter rodentium 0 1 species 0 Citrobacter farmeri 413 67824 species 1 1 genus 1335483 146 0 1 species 563 146 Shimwellia blattae 0 genus 2 1 Candidatus Riesia 0 484 1 401618 1 species 401619 483 0 Candidatus Riesia pediculicola Escherichia 0 4388 12 561 genus 5 1 Escherichia albertii 0 338 208962 species 1 1 species 153 1499973 0 Escherichia marmotae 0 Escherichia coli 562 3774 species 1 1 species 111 564 0 Escherichia fergusonii genus 1 3 Pluralibacter 0 405 1330546 1 0 Pluralibacter gergoviae 61647 271 species 1 species 1 0 [Enterobacter] lignolyticus 133 1334193 0 36866 2238 no rank 5 1 species 133 1920128 Enterobacteriaceae bacterium ENNIH3 0 2066051 122 Enterobacteriaceae bacterium ENNIH1 0 1 species 1768 891974 0 Plautia stali symbiont 1 species Enterobacteriaceae bacterium ENNIH2 0 1920109 117 species 1 693444 98 Enterobacteriaceae bacterium strain FGI 57 0 1 species 2 1 genus 1 1048757 108 Candidatus Moranella 0 species 1 0 Candidatus Moranella endobia 1048758 107 1 3 family 283 2 1903416 Budviciaceae 0 Pragia 0 9 82984 281 genus 1 2 1 species 272 82985 0 Pragia fontium 0 Erwiniaceae 15890 36 1903409 family 28 1 2459 74 53335 Pantoea 0 11 1 genus 1654067 240 0 1 species group 1 species 549 240 Pantoea agglomerans 0 0 Candidatus Pantoea carbekii 579 1235990 species 1 Pantoea vagans 0 375 470934 species 1 1891675 107 Pantoea alhagi 0 1 species 0 468 2630326 no rank 3 1 species 194 592316 Pantoea sp. At-9b 0 159 1484157 Pantoea sp. PSNIH2 0 1 species 1 species 1484158 115 Pantoea sp. PSNIH1 0 Pantoea rwandensis 0 1076550 136 species 1 66269 146 Pantoea stewartii 0 1 species species 1 0 Pantoea ananatis 334 553 genus 1 8 Erwinia 0 551 18 1157 Erwinia amylovora 0 552 131 species 1 90 338565 0 Erwinia tasmaniensis 1 species Erwinia billingiae 0 182337 244 species 1 1 no rank 2622719 106 0 215689 106 Erwinia sp. Ejp617 0 1 species Candidatus Erwinia sp. ErCipseudotaxifoliae 0 364 1922217 species 1 species 1 0 Erwinia pyrifoliae 84 79967 1619313 120 Erwinia gerundensis 0 1 species 1 2 genus 1924 24 51228 0 Wigglesworthia 1 species 51229 1900 Wigglesworthia glossinidia 0 2 genus 2100764 356 0 1 species 665913 184 Pantoea calida 0 species 1 0 Pantoea gaviniae 665914 172 1 2 genus 214 1 82986 0 Tatumella Tatumella citrea 0 53336 213 species 1 0 Buchnera 28 32199 9744 genus 1 2 9716 9 0 Buchnera aphidicola 1 species 21250 18 1903412 Hafniaceae 0 1 14 family Hafnia 0 568 6 652 genus 1 3 476 569 0 Hafnia alvei 1 species 2621980 170 0 1 no rank 1 species 1848580 170 0 Hafnia sp. CBA7124 8 1 genus 20364 41 635 Edwardsiella 0 species 1 0 Edwardsiella piscicida 1263550 193 0 Edwardsiella tarda 636 18964 species 1 species 1 Edwardsiella anguillarum 0 1821960 388 Edwardsiella hoshinae 0 93378 111 species 1 1 species 67780 175 Edwardsiella ictaluri 0 492 2676541 0 2 no rank 0 Edwardsiella sp. LADL05-105 220 1650654 species 1 species 1 0 Edwardsiella sp. EA181011 1578828 272 genus 1 2 0 Obesumbacterium 216 82982 7 1 species 82983 209 Obesumbacterium proteus 0 0 Pectobacteriaceae 16 1903410 4617 family 1 20 genus 2 1 Brenneria 0 1 71655 209 1109412 208 0 Brenneria goodwinii 1 species 1 6 genus 1279 204037 13 Dickeya 0 1 species 204039 149 Dickeya dianthicola 0 127 204038 0 Dickeya dadantii 1 species 1778540 166 Dickeya fangzhongdai 0 1 species 253 1089444 Dickeya solani 0 1 species 1 species 571 204042 Dickeya zeae 0 6 1 genus 1968 22 122277 Pectobacterium 0 1 species 55208 172 Pectobacterium wasabiae 0 species 1 0 Pectobacterium polaris 172 2042057 species 1 0 Pectobacterium atrosepticum 152 29471 0 Pectobacterium parmentieri 922 1905730 species 1 1 species 528 554 0 Pectobacterium carotovorum 33 84565 1145 Sodalis 0 5 1 genus species 1 0 Sodalis endosymbiont of Henestaris halophilus 1929246 527 species 1 0 Sodalis praecaptivus 198 1239307 1 species 63612 129 Sodalis glossinidius 0 258 1486991 Candidatus Sodalis pierantonius 0 1 species 5 order 1240482 1771 0 1771 1240483 10 0 Orbaceae 5 1 family genus 1 2 Frischella 0 1 1335631 841 1 species 1267021 840 Frischella perrara 0 920 6 1193503 Gilliamella 0 2 1 genus 1196095 914 0 Gilliamella apicola 1 species 95 135614 22610 Xanthomonadales 0 1 54 order 14 1 family 19 1775411 1841 Rhodanobacteraceae 0 genus 1 2 0 Frateuria 198 70411 5 Frateuria aurantia 0 81475 193 species 1 genus 1 0 2233801 149 149 2021234 Xanthomonadales bacterium D13 0 1 species genus 1 2 0 Luteibacter 242605 1 205 Luteibacter rhizovicinus 0 204 242606 species 1 328 323413 9 0 Dokdonella 2 1 genus 1 species 319 323415 0 Dokdonella koreensis genus 1 2 Rhodanobacter 0 322 75309 2 species 1 0 Rhodanobacter denitrificans 666685 320 231454 15 620 Dyella 0 4 1 genus 1 species 231455 198 0 Dyella japonica species 1 0 Dyella thiooxydans 211 445710 196 1379159 Dyella jiangningensis 0 1 species 1 39 family 206 32033 20674 Xanthomonadaceae 0 genus 1 9 0 Stenotrophomonas 4816 70 40323 216778 196 0 Stenotrophomonas rhizophila 1 species species 1 Stenotrophomonas nitritireducens 0 288 83617 1 species group 2415 995085 0 1 species 40324 2415 0 Stenotrophomonas maltophilia 1 species 128780 507 0 Stenotrophomonas acidaminiphila 4 no rank 1340 196198 0 Stenotrophomonas sp. WZN-1 0 361 2005046 species 1 0 Stenotrophomonas sp. MYb57 1827305 521 species 1 1793721 275 Stenotrophomonas sp. KCTC 12332 0 1 species 1 species 183 1904944 0 Stenotrophomonas sp. LM091 17 1 genus 10128 338 154 Xanthomonas 0 species group 2 0 2559 643453 0 Xanthomonas citri 346 1892 species 1 Xanthomonas fuscans 0 366648 667 species 1 1 species 442694 165 0 Xanthomonas perforans species 1 0 Xanthomonas axonopodis 232 53413 species 1 0 Xanthomonas hortorum 174 56454 1 species 456327 180 Xanthomonas euvesicatoria 0 2261 347 0 Xanthomonas oryzae 1 species species 1 Xanthomonas vasicola 0 139 56459 0 Xanthomonas alfalfae 366650 155 species 1 Xanthomonas campestris 0 1491 339 species 1 1 species 29447 240 0 Xanthomonas albilineans 896 343 Xanthomonas translucens 0 1 species 585 48664 0 Xanthomonas fragariae 1 species species 1 0 Xanthomonas vesicatoria 369 56460 Xanthomonas sacchari 0 56458 328 species 1 1 species 200 1985254 0 Xanthomonas phaseoli 0 Luteimonas 83614 5 181 genus 2 1 species 1 Luteimonas sp. 100111 0 176 2006110 1 3 genus 681 1 83618 Pseudoxanthomonas 0 415229 151 Pseudoxanthomonas spadix 0 1 species 314722 529 0 Pseudoxanthomonas suwonensis 1 species 0 Lysobacter 3277 12 68 genus 5 1 0 Lysobacter antibioticus 84531 1176 species 1 69 414 Lysobacter enzymogenes 0 1 species Lysobacter capsici 0 1136 435897 species 1 1 species 262324 539 0 Lysobacter gummosus genus 2 1 0 Xylella 5 2370 1385 1 species 1380 2371 0 Xylella fastidiosa order 1 4 0 Cardiobacteriales 2 135615 306 0 Cardiobacteriaceae 304 868 2 family 3 1 302 869 1 0 Dichelobacter 1 2 genus 1 species 870 301 Dichelobacter nodosus 0 2 no rank 504 33811 0 species 1 gamma proteobacterium HdN1 0 83406 267 237 1248727 0 endosymbiont of unidentified scaly snail isolate Monju 1 species 1 103 order 48877 91 135622 Alteromonadales 0 25 1 family 14233 9 267888 0 Pseudoalteromonadaceae 1 24 genus 14224 262 53246 Pseudoalteromonas 0 850 314281 0 Pseudoalteromonas tunicata 1 species Pseudoalteromonas agarivorans 0 509 176102 species 1 species 1 0 Pseudoalteromonas marina 267375 535 species 1 Pseudoalteromonas phenolica 0 161398 471 species 1 Pseudoalteromonas nigrifaciens 0 28109 541 species 1 Pseudoalteromonas rubra 0 43658 291 Pseudoalteromonas aliena 0 617 247523 species 1 species 1 0 Pseudoalteromonas spongiae 298657 782 43657 529 0 Pseudoalteromonas luteoviolacea 1 species species 1 Pseudoalteromonas arctica 0 625 394751 1 species 526 228 Pseudoalteromonas haloplanktis 0 1 species 152297 486 0 Pseudoalteromonas issachenkonii 288 971 Pseudoalteromonas atlantica 0 1 species 1 species 478 43659 Pseudoalteromonas tetraodonis 0 Pseudoalteromonas espejiana 0 28107 607 species 1 1 species 166935 540 0 Pseudoalteromonas translucida Pseudoalteromonas piscicida 0 43662 370 species 1 1 species 594 1348114 Pseudoalteromonas piratica 0 5 no rank 194690 3640 0 1720343 597 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 1 species Pseudoalteromonas sp. 13-15 0 535 1761891 species 1 species 1 Pseudoalteromonas sp. Bsw20308 0 628 283699 species 1 0 Pseudoalteromonas sp. NC201 1514074 1316 1 species 234831 564 0 Pseudoalteromonas sp. SM9913 0 Colwelliaceae 267889 9 5829 family 9 1 4960 28228 26 Colwellia 0 1 6 genus 873 1967665 0 Colwellia beringensis 1 species Colwellia psychrerythraea 0 1097 28229 species 1 3 no rank 196834 2964 0 905 58049 0 Colwellia sp. MT41 1 species 0 Colwellia sp. PAMC 21821 977 1816219 species 1 1816218 1082 0 Colwellia sp. PAMC 20917 1 species Thalassotalea 0 860 3 1518149 genus 2 1 1 species 1763536 857 0 Thalassotalea crassostreae 1 4 family 1838 267894 2 0 Psychromonadaceae 0 Psychromonas 15 67572 1836 genus 3 1 844 2614957 0 1 no rank species 1 0 Psychromonas sp. CNPT3 844 314282 977 357794 Psychromonas ingrahamii 0 1 species family 2 1 0 Ferrimonadaceae 3 267892 142 0 44011 139 genus 1 species 1 0 Ferrimonas balearica 139 44012 Alteromonadaceae 0 13812 27 72275 family 1 28 1 genus 316 261825 0 species 1 Agarivorans gilvus 0 680279 316 10 1 genus 2742 56 2128 Marinobacter 0 3 no rank 83889 707 0 species 1 0 Marinobacter sp. BSs20148 490759 266 1749259 228 Marinobacter sp. LQ44 0 1 species 1 species 213 1671721 Marinobacter sp. CP1 0 species 1 Marinobacter similis 0 1420916 141 304 2743 0 Marinobacter hydrocarbonoclasticus 1 species 0 Marinobacter psychrophilus 256 330734 species 1 1 species 1420917 217 Marinobacter salarius 0 1033846 162 Marinobacter adhaerens 0 1 species Marinobacter salinus 0 285 1874317 species 1 1751872 474 0 1 genus 1 species 1526571 474 Lacimicrobium alkaliphilum 0 226 65 8067 0 Alteromonas 10 1 genus 0 Alteromonas australica 409 589873 species 1 1 species 523 287094 0 Alteromonas addita 28108 3034 Alteromonas macleodii 0 1 species Alteromonas mediterranea 0 314275 1216 species 1 2614992 1457 0 3 no rank 1777491 518 Alteromonas sp. Mac1 0 1 species 1 species 1917158 503 Alteromonas sp. RW2A1 0 species 1 Alteromonas sp. MB-3u-76 0 2058133 436 233316 704 0 Alteromonas stellipolaris 1 species Alteromonas naphthalenivorans 0 715451 659 species 1 1 2 genus 3 1621534 1596 Paraglaciecola 0 Paraglaciecola psychrophila 0 1593 326544 species 1 Glaciecola 0 1204 1 89404 genus 1 3 Glaciecola nitratireducens 0 651 300231 species 1 0 552 2618684 no rank 1 552 983545 Glaciecola sp. 4H-3-7+YE-5 0 1 species family 25 1 0 Shewanellaceae 20 267890 11029 1 24 genus 11009 133 22 0 Shewanella Shewanella piezotolerans 0 425 404011 species 1 355 24 Shewanella putrefaciens 0 1 species 1 species 971 60217 Shewanella violacea 0 0 Shewanella amazonensis 140 60478 species 1 Shewanella oneidensis 0 70863 239 species 1 Shewanella denitrificans 0 192073 468 species 1 0 Shewanella japonica 677 93973 species 1 145 359303 Shewanella loihica 0 1 species 1 species 56812 616 0 Shewanella frigidimarina 1 species 949 271098 Shewanella halifaxensis 0 species 1 0 Shewanella psychrophila 1119 225848 Shewanella baltica 0 62322 1022 species 1 155 260364 0 Shewanella marisflavi 1 species 271097 493 0 Shewanella sediminis 1 species no rank 6 0 196818 1473 species 1 Shewanella sp. W3-18-1 0 341 351745 Shewanella sp. WE21 0 212 2029986 species 1 species 1 0 Shewanella sp. ANA-3 256 94122 1 species 60480 190 0 Shewanella sp. MR-4 Shewanella sp. MR-7 0 60481 186 species 1 0 Shewanella sp. Pdp11 288 2059264 species 1 Shewanella bicestrii 0 202 2018305 species 1 Shewanella woodyi 0 1094 60961 species 1 species 1 Shewanella pealeana 0 70864 333 family 1 3 Moritellaceae 0 912 17 267891 0 Moritella 2 58050 895 genus 1 2 1 species 80854 893 0 Moritella viscosa 991 3 267893 0 Idiomarinaceae 1 6 family genus 1 5 0 Idiomarina 135575 15 988 species 1 0 Idiomarina piscisalsi 1096243 266 1 species 135577 284 0 Idiomarina loihiensis 2 no rank 423 2614829 0 174 2100422 0 Idiomarina sp. OT37-5b 1 species 1 species 249 2055892 0 Idiomarina sp. X4 15206 35 135619 0 Oceanospirillales 1 70 order 0 Halomonadaceae 28256 61 6484 family 31 1 genus 1 0 254 376488 species 1 Halotalea alkalilenta 0 254 376489 185 1 42054 0 Chromohalobacter 1 2 genus 1 species 184 158080 0 Chromohalobacter salexigens genus 1 3 0 Kushneria 504090 13 393 1 species 157779 148 Kushneria marisflavi 0 1 species 232 698828 0 Kushneria konosiri 0 114403 1772 no rank 6 genus 2 1 Candidatus Portiera 0 866 5 235572 861 91844 0 Candidatus Portiera aleyrodidarum 1 species Candidatus Evansia 0 1 1495768 591 genus 2 1 1 species 590 1495769 0 Candidatus Evansia muelleri genus 2 1 Candidatus Carsonella 0 114185 2 315 species 1 Candidatus Carsonella ruddii 0 114186 313 204286 278 0 1 genus 0 Cobetia marina 278 28258 species 1 4 404432 262 Salinicola 0 1 2 genus 1 species 1771309 258 0 Salinicola tamaricis 67 2745 3279 0 Halomonas 1 15 genus 1 species 135 507626 Halomonas chromatireducens 0 species 1 0 Halomonas beimenensis 475662 271 0 Halomonas campaniensis 248 213554 species 1 262 1897729 0 Halomonas aestuarii 1 species species 1 Halomonas hydrothermalis 0 115561 171 Halomonas huangheensis 0 1178482 280 species 1 8 no rank 2609666 1845 0 1 species 213 1883416 Halomonas sp. 1513 0 1 species 1962264 229 Halomonas sp. 'Soap Lake #7' 0 1 species 2136172 248 Halomonas sp. SF2003 0 species 1 Halomonas sp. 'Soap Lake #6' 0 1949203 229 0 Halomonas sp. R57-5 1610576 212 species 1 1 species 277 1504981 0 Halomonas sp. KO116 1 species 158 1118153 Halomonas sp. GFAJ-1 0 1 species 1971364 279 0 Halomonas sp. GT 5 1 family 896 9 255527 0 Saccharospirillaceae genus 2 1 0 Reinekea 448 1 230494 1336806 447 Reinekea forsetii 0 1 species 2 1 genus 439 1445504 10 0 Gynuella 1445505 429 Gynuella sunshinyii 0 1 species family 6 1 0 Kangiellaceae 6 1920240 1822 1816 261963 29 0 Kangiella 5 1 genus species 1 Kangiella koreensis 0 514 261964 1 species 914150 383 Kangiella geojedonensis 0 1144748 397 0 Kangiella sediminilitoris 1 species 1 species 1561924 493 Kangiella profundi 0 1 3 family 34 191033 525 Oleiphilaceae 0 Oleiphilus 0 491 141450 4 genus 1 2 species 1 0 Oleiphilus messinensis 141451 487 14 224372 1655 Alcanivoracaceae 0 1 9 family genus 1 6 0 Alcanivorax 22 59753 1317 244 2638842 0 1 no rank 1113728 244 0 Alcanivorax sp. NBRC 101098 1 species species 1 Alcanivorax borkumensis 0 59754 273 240 285091 Alcanivorax dieselolei 0 1 species 1306787 325 0 Alcanivorax pacificus 1 species 213 1094342 Alcanivorax xenomutans 0 1 species 324 2025617 4 0 Ketobacter 1 2 genus 0 Ketobacter alkanivorans 1917421 320 species 1 Oceanospirillaceae 0 3431 35 135620 family 1 12 2 1537406 280 0 Bacterioplanes 2 1 genus 1 species 1249553 278 Bacterioplanes sanyensis 0 genus 1 0 368 48075 Marinobacterium aestuarii 0 1821621 368 species 1 Oleispira 0 552 4 188907 genus 2 1 548 188908 Oleispira antarctica 0 1 species genus 2 1 Thalassolituus 0 547 4 187492 1 species 187493 543 0 Thalassolituus oleivorans 1 4 genus 5 28253 1649 0 Marinomonas 0 Marinomonas mediterranea 521 119864 species 1 0 Marinomonas posidonica 448 936476 species 1 0 196814 675 no rank 1 675 400668 Marinomonas sp. MWYL1 0 1 species 3 1 family 224379 1 358 Hahellaceae 0 2 1 genus 9 158481 357 0 Hahella species 1 Hahella chejuensis 0 158327 348 43 1 order 31303 28 135623 0 Vibrionales 42 1 family 31275 641 106 Vibrionaceae 0 genus 1 30 Vibrio 0 662 196 15770 no rank 2 0 2614977 449 165 2014742 Vibrio sp. 2521-89 0 1 species 1 species 1116375 284 0 Vibrio sp. EJY3 1 species 672 1314 Vibrio vulnificus 0 species 1 Vibrio tasmaniensis 0 472 212663 species group 10 0 5908 717610 691 715 0 Vibrio natriegens 1 species 1 species 265 766224 Vibrio jasicida 0 Vibrio owensii 0 366 696485 species 1 Vibrio rotiferianus 0 190895 264 species 1 1 species 512 669 0 Vibrio harveyi 1 species 670 1154 Vibrio parahaemolyticus 0 species 1 Vibrio alginolyticus 0 1087 663 species 1 Vibrio campbellii 0 680 856 2 species subgroup 689 2315253 0 species 1 0 Vibrio antiquarius 150340 275 species 1 Vibrio diabolicus 0 414 50719 species 1 0 Vibrio anguillarum 55601 828 species 1 0 Vibrio scophthalmi 531 45658 687 531 0 Vibrio gazogenes 1 species 1891919 669 0 1 species group 669 29498 0 Vibrio tubiashii 1 species 217 676 0 Vibrio fluvialis 1 species 1 species 2025808 299 0 Vibrio qinghaiensis 1 species 28173 268 0 Vibrio nigripulchritudo 1 species 666 482 0 Vibrio cholerae 1 species 444 1435069 Vibrio tritonius 0 species 1 0 Vibrio coralliilyticus 190893 854 1 species 674 354 0 Vibrio mimicus 1 species 52443 604 Vibrio tapetis 0 Vibrio hyugaensis 0 1534743 267 species 1 1 species 765 29494 Vibrio furnissii 0 1 species 553239 318 Vibrio breoganii 0 212 246861 0 1 genus 1 species 673 212 0 Grimontia hollisae 0 Paraphotobacterium 1964 9 2042066 genus 1 2 species 1 Paraphotobacterium marinum 0 1955 1755811 genus 4 1 Aliivibrio 0 3061 16 511678 80852 1716 0 Aliivibrio wodanis 1 species Aliivibrio fischeri 0 699 668 species 1 1 species 630 40269 Aliivibrio salmonicida 0 Photobacterium 0 657 11 10162 genus 1 4 Photobacterium damselae 0 38293 9203 species 1 0 Photobacterium profundum 709 74109 species 1 species 1 0 Photobacterium gaetbulicola 1295392 239 Thiotrichales 0 22 72273 24837 order 1 36 Thiotrichaceae 0 135617 15 1744 family 1 5 1 40751 788 0 Thioploca 2 1 genus species 1 0 Thioploca ingrica 40754 787 1 2 genus 941 2 1021 Beggiatoa 0 288004 939 Beggiatoa leptomitoformis 0 1 species 23 135616 5740 Piscirickettsiaceae 0 15 1 family genus 3 1 0 Thiomicrospira 686 933 3 1 species 330 92245 Thiomicrospira aerophila 0 0 Thiomicrospira cyclica 353 147268 species 1 0 Piscirickettsia 1237 1 898 genus 2 1 1 species 1238 897 0 Piscirickettsia salmonis 4 1 genus 2839 34067 44 Cycloclasticus 0 1 species 996 1329899 0 Cycloclasticus zancles no rank 2 0 1799 2621467 species 1 0 Cycloclasticus sp. P1 385025 902 1 species 728003 897 0 Cycloclasticus sp. PY97N 1 2 genus 28884 1 446 Hydrogenovibrio 0 0 Hydrogenovibrio crunogenus 445 39765 species 1 0 Methylophaga 40222 8 848 genus 1 3 0 Methylophaga nitratireducenticrescens 754476 474 species 1 1 species 366 754477 0 Methylophaga frappieri Francisellaceae 0 17331 34064 43 family 15 1 0 Allofrancisella 4 1869285 1070 genus 1 2 species 1 Allofrancisella guangzhouensis 0 594679 1066 16218 195 262 0 Francisella 1 12 genus 1533 657445 0 Francisella noatunensis 1 species 1000 573569 Francisella sp. TX077308 0 1 species species 1 0 Francisella halioticida 1873 549298 1 species 263 2753 0 Francisella tularensis 0 2128 2610885 no rank 2 1547445 1192 Francisella sp. FSC1006 0 1 species 1 species 475375 936 0 Francisella sp. MA067296 Francisella sp. CA97-1460 0 1542390 1468 species 1 0 Francisella sp. TX077310 1178 573570 species 1 1 species 908 622488 Francisella hispaniensis 0 species 1 Francisella philomiragia 0 28110 2310 species 1 Francisella persica 0 872 954 340 1 class 105752 106 28216 Betaproteobacteria 0 3050 22 206389 Rhodocyclales 0 1 20 order 1 12 family 25 2008794 2236 Zoogloeaceae 0 33057 15 1120 Thauera 0 6 1 genus species 1 0 Thauera humireducens 1134435 195 179 59405 Thauera aromatica 0 1 species Thauera chlorobenzoica 0 96773 224 species 1 no rank 2 0 507 2609274 Thauera sp. MZ1T 0 85643 261 species 1 species 1 0 Thauera sp. K11 246 2005884 5 1 genus 12960 29 1091 0 Azoarcus 0 Azoarcus olearius 418699 213 species 1 245 2067960 0 Azoarcus sp. SY39 1 species 2 no rank 2629479 604 0 748247 235 Azoarcus sp. KH32C 0 1 species 1 species 198107 369 Azoarcus sp. CIB 0 202 2008795 0 1 family 73029 202 0 1 genus species 1 Dechloromonas aromatica 0 259537 202 6 1 family 5 75787 590 Rhodocyclaceae 0 75788 120 0 1 no rank species 1 Rhodocyclaceae bacterium 0 1898103 120 genus 1 2 Azospira 0 146937 6 190 Azospira oryzae 0 184 146939 species 1 1 551759 275 Aromatoleum 0 1 2 genus species 1 Aromatoleum aromaticum 0 274 551760 119066 5627 0 11 no rank 1 genus 193 1301080 0 Candidatus Nasuia deltocephalinicola 0 193 1160784 species 1 2 1381133 919 Candidatus Profftella 0 1 2 genus species 1 Candidatus Profftella armatura 0 917 669502 0 Kinetoplastibacterium 4252 33055 31 genus 1 6 1 species 710 233181 Kinetoplastibacterium blastocrithidii 0 Candidatus Kinetoplastibacterium oncopeltii 0 754 994696 species 1 1 species 994695 695 0 Candidatus Kinetoplastibacterium galatii Candidatus Kinetoplastibacterium crithidii 0 959 33056 species 1 1103 994692 0 Candidatus Kinetoplastibacterium desouzaii 1 species 1 genus 39 189384 0 39 189385 Candidatus Tremblaya princeps 0 1 species genus 1 0 224 327159 1 species 224 327160 Candidatus Accumulibacter phosphatis 0 Neisseriales 0 50 206351 5924 order 1 36 Neisseriaceae 0 3906 28 481 family 1 22 3 59 427 0 Vitreoscilla 1 3 genus no rank 1 0 296 2627922 296 96942 0 Vitreoscilla sp. C1 1 species 0 Vitreoscilla filiformis 128 63 species 1 0 538 204 genus 1 204 539 Eikenella corrodens 0 1 species 2 1 genus 385 1 1193515 0 Snodgrassella 384 1196083 Snodgrassella alvi 0 1 species Neisseria 0 1941 21 482 genus 12 1 0 Neisseria zoodegmatis 123 326523 species 1 0 Neisseria weaveri 28091 172 species 1 1 species 610 487 Neisseria meningitidis 0 species 1 0 Neisseria sicca 490 95 Neisseria gonorrhoeae 0 485 172 species 1 species 1 Neisseria lactamica 0 486 169 species 1 0 Neisseria elongata 121 495 1853278 111 Neisseria sp. 10023 0 1 species species 1 Neisseria mucosa 0 488 102 2 no rank 2623750 245 0 1 species 1853276 134 Neisseria sp. 10022 0 0 Neisseria sp. KEM232 111 655307 species 1 0 421605 674 no rank 1 1 species 674 2052837 Neisseriaceae bacterium DSM 100970 0 1 2 genus 247 1 71 Simonsiella 0 0 Simonsiella muelleri 246 72 species 1 0 Chromobacteriaceae 29 1499392 1968 family 1 13 223 9 885864 Jeongeupia 0 2 1 genus no rank 1 0 214 2619593 1906741 214 Jeongeupia sp. USM3 0 1 species 195 7 168470 Laribacter 0 2 1 genus 188 168471 Laribacter hongkongensis 0 1 species 1190 90153 0 4 no rank Chromobacterium 0 1190 18 535 genus 4 1 536 345 0 Chromobacterium violaceum 1 species species 1 Chromobacterium vaccinii 0 1108595 487 no rank 1 0 340 2641838 2059672 340 Chromobacterium sp. ATCC 53434 0 1 species 149 187 3 0 Aquaspirillum 1 2 genus 146 2620219 0 1 no rank 0 Aquaspirillum sp. LM1 146 1938604 species 1 Pseudogulbenkiania 0 182 568394 3 genus 1 2 179 2642558 0 1 no rank 748280 179 Pseudogulbenkiania sp. NH8B 0 1 species 1 41 order 39 32003 7663 0 Nitrosomonadales 4 family 2772226 416 0 265 935200 1 Sulfuricella 0 2 1 genus species 1 Sulfuricella denitrificans 0 649841 264 genus 1 2 Sulfuriferula 0 151 1 1778653 no rank 1 0 150 2637784 150 1985873 0 Sulfuriferula sp. AH1 1 species family 5 1 Gallionellaceae 0 422 6 90627 genus 1 2 Sideroxydans 0 9 314343 184 175 63745 0 Sideroxydans lithotrophicus 1 species genus 2 1 Gallionella 0 232 6 96 226 370405 0 Gallionella capsiferriformans 1 species family 4 1 Sterolibacteriaceae 0 316 2 2008793 1 2 genus 2 378210 153 Methyloversatilis 0 no rank 1 0 151 2639971 species 1 0 Methyloversatilis sp. RAC08 1842540 151 1 genus 161 1054211 0 Sulfuritalea hydrogenivorans 0 161 748811 species 1 Thiobacillaceae 0 191 2008790 1 family 3 1 2 1 genus 919 1 190 0 Thiobacillus 1 species 189 36861 Thiobacillus denitrificans 0 family 12 1 Methylophilaceae 0 15 32011 3500 3 1 genus 359407 22 979 0 Methylotenera 1 species 359408 393 Methylotenera mobilis 0 1 species 564 1055487 Methylotenera versatilis 0 265 16 0 1 genus 265 2630143 0 1 no rank 1 species 265 1662285 Methylophilus sp. TWE2 0 1 3 genus 287 81682 11 0 Methylovorus 0 130 2634027 no rank 1 887061 130 0 Methylovorus sp. MP688 1 species 0 Methylovorus glucosotrophus 266009 146 species 1 genus 3 1 Candidatus Methylopumilus 0 1753 25 1679002 Candidatus Methylopumilus planktonicus 0 1228 1581557 species 1 Candidatus Methylopumilus turicensis 0 1581680 500 species 1 201 404 0 1 genus 1 species 201 405 Methylobacillus flagellatus 0 12 1 family 6 206379 2779 Nitrosomonadaceae 0 genus 1 7 0 Nitrosomonas 12 914 2403 0 908 2609265 no rank 2 1 species 473 153948 Nitrosomonas sp. AL212 0 261292 435 0 Nitrosomonas sp. Is79A3 1 species 0 Nitrosomonas eutropha 336 916 species 1 1 species 44577 473 Nitrosomonas ureae 0 species 1 Nitrosomonas europaea 0 176 915 species 1 0 Nitrosomonas communis 498 44574 genus 1 4 0 Nitrosospira 370 3 35798 species 1 0 Nitrosospira lacus 165 1288494 species 1 0 Nitrosospira briensis 91 35799 species 1 0 Nitrosospira multiformis 1231 111 Burkholderiales 0 80840 713 82741 order 229 1 43 1 family 10694 28 506 0 Alcaligenaceae genus 1 2 0 Basilea 401 1472344 2 species 1 Basilea psittacipulmonis 0 399 1472345 genus 2 0 1261 29574 1 species 29575 679 0 Taylorella equigenitalis 582 84590 Taylorella asinigenitalis 0 1 species Oligella 0 230 4 90243 genus 1 2 species 1 0 Oligella urethralis 226 90245 Castellaniella 0 192 359336 1 genus 2 1 1 species 191 75697 0 Castellaniella defragrans 1 3 genus 366 5 290425 Advenella 0 0 Advenella kashmirensis 157 310575 species 1 204 302406 Advenella mimigardefordensis 0 1 species Pusillimonas 0 305976 4 314 genus 2 1 310 2640016 0 1 no rank species 1 Pusillimonas sp. T7-7 0 310 1007105 2 1 genus 507 4 996 0 Alcaligenes 1 species 992 511 0 Alcaligenes faecalis 6 1 genus 46 222 2566 Achromobacter 0 1 species 85698 1040 0 Achromobacter xylosoxidans Achromobacter insolitus 0 257 217204 species 1 species 1 0 Achromobacter spanius 459 217203 1 species 534 32002 Achromobacter denitrificans 0 230 2626865 0 1 no rank Achromobacter sp. AONIH1 0 230 1758194 species 1 genus 2 1 Orrella 0 202 2 1921582 species 1 Orrella dioscoreae 0 1851544 200 2 1 genus 300 1 1100891 Paenalcaligenes 0 Paenalcaligenes hominis 0 299 643674 species 1 1 17 genus 3838 79 517 0 Bordetella species 1 0 Bordetella bronchiseptica 518 548 Bordetella petrii 0 183 94624 species 1 35814 109 0 Bordetella holmesii 1 species species 1 Bordetella genomosp. 8 0 1416806 269 species 1 Bordetella parapertussis 0 328 519 1 species 249 463040 Bordetella genomosp. 13 0 species 1 0 Bordetella genomosp. 9 1416803 218 Bordetella bronchialis 0 463025 257 species 1 96 521 Bordetella avium 0 1 species species 1 0 Bordetella pertussis 520 312 Bordetella trematum 0 134 123899 species 1 1331258 172 0 Bordetella pseudohinzii 1 species species 1 Bordetella hinzii 0 207 103855 species 1 Bordetella flabilis 0 463014 201 Bordetella genomosp. 6 0 289 463024 species 1 0 2630031 187 no rank 1 1 species 1697043 187 Bordetella sp. H567 0 1 27 family 34 75682 6712 0 Oxalobacteraceae 6 1 genus 1838 24 963 Herbaspirillum 0 0 Herbaspirillum frisingense 293 92645 species 1 1 species 543 964 Herbaspirillum seropedicae 0 0 Herbaspirillum rubrisubalbicans 179 80842 species 1 Herbaspirillum hiltneri 0 341045 560 species 1 0 239 2624150 no rank 1 species 1 Herbaspirillum sp. meg3 0 2025949 239 0 Janthinobacterium 29580 40 1575 genus 7 1 species 1 Janthinobacterium agaricidamnosum 0 55508 246 368607 281 0 Janthinobacterium svalbardensis 1 species 4 no rank 1008 2610881 0 1644131 316 Janthinobacterium sp. 1_2014MBL_MicDiv 0 1 species 181 375286 Janthinobacterium sp. Marseille 0 1 species 1 species 265 1236179 Janthinobacterium sp. B9-8 0 0 Janthinobacterium sp. LM6 246 1938606 species 1 0 165 846 genus 1 165 847 Oxalobacter formigenes 0 1 species 303379 417 0 2 genus species 1 Herminiimonas arsenitoxidans 0 1809410 222 204773 195 0 Herminiimonas arsenicoxydans 1 species genus 6 1 0 Massilia 149698 48 1655 1 species 1141883 355 Massilia putida 0 1 species 2045208 257 0 Massilia sp. B2 no rank 2 0 617 2609279 species 1 0 Massilia sp. NR 4-1 252 1678028 species 1 0 Massilia sp. WG5 365 1707785 1 species 378 2072590 Massilia sp. ZMN-3 0 genus 1 4 Collimonas 0 27 202907 1028 0 Collimonas arenae 414 279058 species 1 species 1 0 Collimonas fungivorans 305 158899 282 279113 Collimonas pratensis 0 1 species 80841 445 0 2 no rank 180 1469502 Burkholderiales bacterium GJ-E10 0 1 species 265 1834205 Burkholderiales bacterium YL45 0 1 species 0 Burkholderiaceae 44961 119060 160 family 84 1 genus 9 1 Cupriavidus 0 54 106589 5027 1 species 106590 559 Cupriavidus necator 0 species 1 Cupriavidus pinatubonensis 0 348 248026 species 1 0 Cupriavidus basilensis 875 68895 2 no rank 2640874 1529 0 species 1 Cupriavidus sp. USMAHM13 0 1389192 569 Cupriavidus sp. USMAA2-4 0 960 876364 species 1 0 Cupriavidus sp. USMAA1020 586 367825 species 1 Cupriavidus metallidurans 0 745 119219 species 1 1 species 82541 331 Cupriavidus gilardii 0 1 4 genus 44013 13 979 0 Polynucleobacter 0 Polynucleobacter asymbioticus 455 576611 species 1 289 1835254 0 Polynucleobacter duraquae 1 species species 1 Polynucleobacter necessarius 0 576610 222 1 41 genus 28603 608 32008 0 Burkholderia 19 species group 11423 87882 0 315 488732 0 Burkholderia diffusa 1 species 1 species 488729 268 0 Burkholderia metallica 1 species 292 1729 Burkholderia cepacia 0 482957 962 Burkholderia lata 0 1 species species 1 0 Burkholderia cenocepacia 1540 95486 152480 492 Burkholderia ambifaria 0 1 species species 1 0 Burkholderia contaminans 429 488447 species 1 0 Burkholderia ubonensis 101571 1079 237 265293 [Pseudomonas] mesoacidophila 0 1 species species 1 0 Burkholderia pyrrocinia 248 60550 1 species 584 95485 0 Burkholderia stabilis species 1 Burkholderia multivorans 0 754 87883 488731 380 0 Burkholderia seminalis 1 species 60552 672 Burkholderia vietnamiensis 0 1 species Burkholderia territorii 0 1503055 233 species 1 species 1 Burkholderia dolosa 0 152500 298 488446 647 0 Burkholderia latens 1 species species 1 0 Burkholderia pseudomultivorans 262 1207504 Burkholderia stagnalis 0 1503054 294 species 1 species 1 Burkholderia plantarii 0 41899 364 species 1 0 Burkholderia glumae 337 780 7 species group 11364 111527 0 species 1 Burkholderia pseudomallei 0 6302 28450 1060 57975 0 Burkholderia thailandensis 1 species 736 1637841 Burkholderia sp. MSMB0852 0 1 species species 1 0 Burkholderia sp. MSMB0266 1637837 495 1514 13373 0 Burkholderia mallei 1 species 0 Burkholderia sp. MSMB617WGS 1637831 577 species 1 Burkholderia oklahomensis 0 680 342113 species 1 28095 699 Burkholderia gladioli 0 1 species 2613784 3365 0 11 no rank species 1 0 Burkholderia sp. 2002721687 1468409 307 1 species 171 1795874 Burkholderia sp. PAMC 28687 0 0 Burkholderia sp. RPE67 758796 412 species 1 species 1 0 Burkholderia sp. HB1 342 1678678 1 species 387 640512 Burkholderia sp. CCGE1003 0 393 1097668 0 Burkholderia sp. YI23 1 species species 1 Burkholderia sp. PAMC 26561 0 202 1795043 Burkholderia sp. KJ006 0 284 416344 species 1 species 1 Burkholderia sp. CCGE1001 0 335 640510 0 Burkholderia sp. Bp7605 1740163 213 species 1 species 1 Burkholderia sp. Bp5365 0 319 1740162 genus 1 12 0 Paraburkholderia 44 1822464 4094 1 species 309 311230 Paraburkholderia terrae 0 0 Paraburkholderia phymatum 288 148447 species 1 252970 272 Paraburkholderia phenoliruptrix 0 1 species 493 261302 Paraburkholderia phytofirmans 0 1 species 1 species 75105 719 Paraburkholderia caribensis 0 1 species 948107 316 Paraburkholderia sprentiae 0 Paraburkholderia aromaticivorans 0 285 2026199 species 1 species 1 Paraburkholderia xenovorans 0 36873 348 1 species 134537 272 0 Paraburkholderia fungorum 1 species 382 169430 0 Paraburkholderia hospita no rank 1 0 2615204 366 1 species 1926494 366 0 Paraburkholderia sp. SOS3 1 genus 2571159 169 0 412963 169 Paraburkholderia rhizoxinica 0 1 species 0 Pandoraea 93217 28 3137 genus 10 1 1 species 93220 466 Pandoraea pnomenusa 0 Pandoraea faecigallinarum 0 230 656179 species 1 Pandoraea vervacti 0 656178 281 species 1 257 93218 Pandoraea apista 0 1 species species 1 0 Pandoraea thiooxydans 199 445709 species 1 0 Pandoraea oxalativorans 345 573737 746 93221 Pandoraea pulmonicola 0 1 species 1 species 144 93222 Pandoraea sputorum 0 93219 441 Pandoraea norimbergensis 0 1 species 0 Ralstonia 2431 15 48736 genus 1 5 427 329 0 Ralstonia pickettii 1 species 1 species 308 105219 Ralstonia mannitolilytica 0 species 1 0 Ralstonia solanacearum 1468 305 species 1 Ralstonia insidiosa 0 213 190721 1 genus 1827195 361 0 1 species 361 758793 0 Burkholderia sp. RPE64 101 80864 15320 Comamonadaceae 0 55 1 family 0 Limnohabitans 665874 1 306 genus 1 3 305 2626134 0 2 no rank 1678129 154 Limnohabitans sp. 103DPR2 0 1 species species 1 Limnohabitans sp. 63ED37-2 0 1678128 151 0 Ottowia 421 219181 3 genus 1 3 2109914 273 0 Ottowia sp. KADR8-3 1 species 2645081 145 0 1 no rank 0 Ottowia sp. oral taxon 894 145 1658672 species 1 2678886 164 0 1 genus 2116657 164 0 Melaminivora sp. SC2-7 1 species genus 4 1 Comamonas 0 7 283 2165 0 Comamonas serinivorans 888 1082851 species 1 species 1 Comamonas testosteroni 0 410 285 860 225992 0 Comamonas kerstersii 1 species 137 352450 1 Simplicispira 0 2 1 genus species 1 0 Simplicispira sp. SC1-8 136 2109915 281 201096 4 0 Alicycliphilus 1 2 genus Alicycliphilus denitrificans 0 179636 277 species 1 genus 1 0 178 238749 species 1 0 Diaphorobacter polyhydroxybutyrativorans 178 1546149 2 1 genus 173 1436289 2 Candidatus Symbiobacter 0 species 1 0 Candidatus Symbiobacter mobilis 171 1436290 0 Melaminivora 12 1649468 265 genus 2 1 2641902 253 0 1 no rank 1 species 2109913 253 0 Melaminivora sp. SC2-9 2 genus 1871 52972 0 1503 2638319 0 1 no rank 1503 296591 0 Polaromonas sp. JS666 1 species species 1 Polaromonas naphthalenivorans 0 216465 368 Acidovorax 0 40 12916 1738 genus 1 9 species 1 0 Acidovorax avenae 335 80867 1 species 194 721785 Acidovorax ebreus 0 species 1 Acidovorax citrulli 0 80869 235 Acidovorax sp. NA3 0 122 553814 species 1 0 2684926 812 no rank 4 species 1 0 Acidovorax sp. KKS102 171 358220 1 species 190 232721 Acidovorax sp. JS42 0 1 species 1858609 275 Acidovorax sp. T1 0 Acidovorax sp. RAC01 0 176 1842533 species 1 0 Variovorax 34072 19 2915 genus 1 5 354 436515 0 Variovorax boronicumulans 1 species 1788 34073 Variovorax paradoxus 0 1 species 0 754 663243 no rank 2 1 species 419 2126319 0 Variovorax sp. PMC12 335 1795631 0 Variovorax sp. PAMC 28711 1 species genus 1 4 Hydrogenophaga 0 730 47420 4 1 species 1763535 212 0 Hydrogenophaga crassostreae 0 514 2610897 no rank 2 species 1 0 Hydrogenophaga sp. PBC 274 795665 species 1 0 Hydrogenophaga sp. RAC07 240 1842537 0 364316 720 genus 1 720 364317 0 Verminephrobacter eiseniae 1 species 28 80865 1555 0 Delftia 5 1 genus 1 species 315 180282 0 Delftia tsuruhatensis 0 Delftia acidovorans 352 80866 species 1 860 2613839 0 2 no rank Delftia sp. HK171 0 346 1920191 species 1 1 species 742013 514 Delftia sp. Cs1-4 0 Rhodoferax 0 811 3 28065 genus 5 1 species 1 Rhodoferax antarcticus 0 214 81479 species 1 0 Rhodoferax ferrireducens 192843 166 0 Rhodoferax saidenbachensis 1484693 119 species 1 1 species 309 1842727 Rhodoferax koreense 0 2 genus 309 2490452 0 Comamonadaceae bacterium A1 0 1458425 144 species 1 species 1 Comamonadaceae bacterium B1 0 1458426 165 genus 1 0 480 174951 94132 480 0 Ramlibacter tataouinensis 1 species 17 no rank 224471 3896 0 genus 1 2 0 Mitsuaria 510 3 65047 no rank 1 0 2648776 507 Mitsuaria sp. 7 0 1658665 507 species 1 genus 2 1 0 Paucibacter 3 318147 618 2642959 615 0 1 no rank Paucibacter sp. KCTC 42545 0 615 1768242 species 1 316612 6 257 Methylibium 0 2 1 genus Methylibium petroleiphilum 0 251 105560 species 1 0 Rubrivivax 12 28067 405 genus 1 2 species 1 Rubrivivax gelatinosus 0 393 28068 2 1 genus 3 88 270 0 Leptothrix 267 34029 Leptothrix cholodnii 0 1 species 1 2 genus 2 212743 363 0 Rhizobacter 0 Rhizobacter gummiphilus 946333 361 species 1 592 413882 [Polyangium] brachysporum 0 1 species 2 1 genus 374 19 32012 Thiomonas 0 species 1 0 Thiomonas intermedia 926 355 genus 2 1 Roseateles 0 507 6 93681 1 species 501 76731 0 Roseateles depolymerans 33809 641 0 2 no rank species 1 0 Betaproteobacteria bacterium GR16-43 286 1904640 beta proteobacterium CB 0 355 543913 species 1 0 Zetaproteobacteria 381 3 580370 class 6 1 378 6 580371 0 Mariprofundales 1 5 order 1 580372 372 Mariprofundaceae 0 1 4 family 0 Mariprofundus 371 8 377315 genus 3 1 species 1 Mariprofundus ferrinatatus 0 149 1921087 1 species 214 1921086 0 Mariprofundus aestuarium 11 1 class 2716 4 1553900 Oligoflexia 0 Bdellovibrionales 0 1136 4 213481 order 1 5 family 4 1 0 Bdellovibrionaceae 8 213483 1132 genus 3 1 0 Bdellovibrio 1124 958 1 406 453816 Bdellovibrio exovorus 0 1 species 1 species 959 717 Bdellovibrio bacteriovorus 0 1 5 order 6 2024979 1576 0 Bacteriovoracales 0 263369 418 family 1 146784 418 0 1 genus 1 species 960 418 0 Bacteriovorax stolpii 0 Halobacteriovoraceae 1152 1 1652132 family 1 3 Halobacteriovorax 0 1 1652133 1151 genus 1 2 97084 1150 0 Halobacteriovorax marinus 1 species subphylum 184 0 71007 68525 0 Deltaproteobacteria 29411 37 28221 class 1 116 1 36 order 16338 146 29 0 Myxococcales suborder 25 0 9427 80811 7 1524215 1782 Anaeromyxobacteraceae 0 5 1 family 4 1 genus 1775 161492 21 Anaeromyxobacter 0 no rank 2 0 2620896 1036 431 447217 0 Anaeromyxobacter sp. K 1 species species 1 Anaeromyxobacter sp. Fw109-5 0 605 404589 1 species 161493 718 0 Anaeromyxobacter dehalogenans Vulgatibacteraceae 0 13 1524213 422 family 1 3 2 1524214 409 Vulgatibacter 0 1 2 genus Vulgatibacter incomptus 0 407 1391653 species 1 3097 39 27 Archangiaceae 0 8 1 family genus 2 1 Cystobacter 0 42 2 682 Cystobacter fuscus 0 43 680 species 1 396 40 0 1 genus 1 species 41 396 Stigmatella aurantiaca 0 genus 2 1 Melittangium 0 44 2 518 1 species 83453 516 Melittangium boletus 0 genus 2 1 Archangium 0 3 47 1474 species 1 Archangium gephyra 0 1471 48 13 31 4126 Myxococcaceae 0 1 9 family genus 1 3 0 Corallococcus 8 83461 1214 Myxococcus macrosporus 0 35 543 species 1 184914 663 0 Corallococcus coralloides 1 species genus 5 1 0 Myxococcus 2899 46 32 species 1 Myxococcus fulvus 0 33 1283 1 species 83455 578 Myxococcus stipitatus 0 1297742 564 0 Myxococcus hansupus 1 species 34 428 Myxococcus xanthus 0 1 species suborder 3 0 1301 224462 family 3 1 Kofleriaceae 0 224464 12 1301 2 1 genus 11 162027 1289 0 Haliangium 1278 80816 Haliangium ochraceum 0 1 species 7 suborder 5464 80812 0 4 1 family 9 49 4407 0 Polyangiaceae 3597 20 39643 0 Sorangium 1 2 genus 3577 56 0 Sorangium cellulosum 1 species 801 50 0 1 genus species 1 Chondromyces crocatus 0 801 52 family 3 1 Sandaracinaceae 0 1 1055686 1057 genus 1 2 Sandaracinus 0 1055688 5 1056 species 1 0 Sandaracinus amylolyticus 1051 927083 order 25 1 Desulfovibrionales 0 3621 31 213115 family 1 3 0 Desulfohalobiaceae 1 213117 87 Desulfohalobium 0 86 2 45662 genus 1 2 45663 84 Desulfohalobium retbaense 0 1 species 1 4 family 236 213116 2 0 Desulfomicrobiaceae genus 1 3 Desulfomicrobium 0 4 898 234 Desulfomicrobium orale 0 88 132132 species 1 142 899 0 Desulfomicrobium baculatum 1 species family 17 1 Desulfovibrionaceae 0 17 194924 3267 4 1 genus 463 9 2035811 0 Pseudodesulfovibrio 163 1716143 0 Pseudodesulfovibrio indicus 1 species 92 57320 Pseudodesulfovibrio profundus 0 1 species 182210 199 Pseudodesulfovibrio aespoeensis 0 1 species 1 genus 755 41707 0 29546 755 0 Lawsonia intracellularis 1 species genus 1 9 0 Desulfovibrio 21 872 1599 328 184917 Desulfovibrio magneticus 0 1 species 1 species 881 527 0 Desulfovibrio vulgaris species 1 0 Candidatus Desulfovibrio trichonymphae 62 1725232 1 species 58180 120 0 Desulfovibrio alaskensis 1 no rank 77 2593640 0 Desulfovibrio sp. G11 0 77 631220 species 1 1 species 876 270 Desulfovibrio desulfuricans 0 species 1 0 Desulfovibrio piger 103 901 44742 91 0 Desulfovibrio fairfieldensis 1 species genus 1 0 253 2794998 species 1 Desulfovibrio salexigens 0 253 880 0 2582840 180 genus 1 1 species 873 180 0 Desulfovibrio africanus 3 order 1218 213113 0 1 3 family 117942 2 1218 0 Desulfurellaceae 861 33001 0 1 genus Desulfurella acetivorans 0 33002 861 species 1 1 genus 355 84404 0 Hippea maritima 0 84405 355 species 1 3451 17 213118 Desulfobacterales 0 17 1 order 1 8 family 5 213121 1050 Desulfobulbaceae 0 5 109168 368 Desulfotalea 0 1 2 genus 84980 363 0 Desulfotalea psychrophila 1 species genus 1 0 427922 176 1 species 176 427923 Desulfurivibrio alkaliphilus 0 0 Desulfocapsa 385 1 53318 genus 2 1 species 1 0 Desulfocapsa sulfexigens 65555 384 Desulfobulbus 0 2 893 116 genus 1 2 species 1 Desulfobulbus sp. ORNL 0 1986146 114 1 8 family 13 213119 2384 0 Desulfobacteraceae genus 1 0 733 28222 Desulfobacula toluolica 0 28223 733 species 1 897 218207 0 1 genus 259354 897 Desulfatibacillum alkenivorans 0 1 species genus 3 1 0 Desulfococcus 896 1 444 1 species 897 140 Desulfococcus multivorans 0 303 181663 0 Desulfococcus oleovorans 1 species 1 2 genus 2295 4 297 Desulfobacterium 0 293 2296 Desulfobacterium autotrophicum 0 1 species 1 23 order 3899 69541 51 Desulfuromonadales 0 2697 18 213422 Geobacteraceae 0 1 13 family genus 1 0 159 392332 Geoalkalibacter subterraneus 0 159 483547 species 1 Geobacter 0 2520 28231 39 genus 1 11 species 1 0 Geobacter daltonii 1203471 180 1 species 143 35554 0 Geobacter sulfurreducens species 1 0 Geobacter uraniireducens 351604 643 species 1 0 Geobacter bemidjiensis 194 225194 2 no rank 2627627 508 0 species 1 0 Geobacter sp. M18 311 443143 species 1 Geobacter sp. M21 0 443144 197 species 1 Geobacter anodireducens 0 135 1340425 1 species 313985 115 0 Geobacter lovleyi 1 species 345632 186 0 Geobacter pickeringii 377 28232 Geobacter metallireducens 0 1 species family 9 1 0 Desulfuromonadaceae 1151 6 213421 Pelobacter 0 547 18 7 genus 1 5 0 2620299 149 no rank 1 Pelobacter sp. SFB93 0 1842532 149 species 1 132 29542 0 Pelobacter acetylenicus 1 species species 1 0 Pelobacter propionicus 29543 133 1 species 126 19 Pelobacter carbinolicus 0 890 11 598 0 Desulfuromonas 3 1 genus 0 Desulfuromonas soudanensis 365 1603606 species 1 no rank 1 0 2614637 222 1823759 222 0 Desulfuromonas sp. DDH964 1 species 0 Desulfarculales 453227 1 268 order 4 1 0 Desulfarculaceae 267 453228 2 family 3 1 genus 1 2 Desulfarculus 0 453229 1 265 1 species 264 453230 Desulfarculus baarsii 0 579 4 213462 Syntrophobacterales 0 7 1 order family 5 1 0 Syntrophaceae 13 213468 420 Desulfomonile 0 171 2357 2 genus 2 1 2358 169 0 Desulfomonile tiedjei 1 species genus 1 0 43773 111 Syntrophus aciditrophicus 0 111 316277 species 1 125 60892 0 1 genus 1 species 60893 125 0 Desulfobacca acetoxidans 0 213465 155 family 1 0 29526 155 genus 1 Syntrophobacter fumaroxidans 0 155 119484 species 1 68 1 class 41596 35 29547 0 Epsilonproteobacteria 3 order 904 235899 0 2 family 2795691 269 0 genus 1 2 0 Nitratiruptor 2 269258 269 no rank 1 0 2624044 267 1 species 267 387092 Nitratiruptor sp. SB155-2 0 family 1 0 635 224467 1 genus 191291 635 0 Nautilia profundicola 0 244787 635 species 1 40657 77 213849 0 Campylobacterales 1 64 order 11 72293 5127 Helicobacteraceae 0 1 14 family 209 19 4990 Helicobacter 0 12 1 genus 1 species 286 1591088 Helicobacter himalayensis 0 374 37372 0 Helicobacter bilis 1 species 1 species 76936 243 Helicobacter typhlonius 0 species 1 Helicobacter pylori 0 210 2177 2593540 218 0 1 no rank 0 Helicobacter sp. MIT 01-6242 218 222136 species 1 1 species 595 138563 0 Helicobacter cetorum species 1 0 Helicobacter cinaedi 213 264 1 species 120 214 Helicobacter felis 0 species 1 Helicobacter hepaticus 0 354 32025 1 species 212 158 Helicobacter acinonychis 0 Helicobacter mustelae 0 182 217 species 1 1 genus 843 126 0 0 Wolinella succinogenes 844 126 species 1 family 4 0 2771472 669 227 269260 0 1 genus Nitratifractor salsuginis 0 227 269261 species 1 genus 3 1 Sulfurovum 0 265570 6 442 0 2646778 232 no rank 1 0 Sulfurovum sp. NBC37-1 387093 232 species 1 species 1 0 Sulfurovum lithotrophicum 206403 204 4 family 1413 2771471 0 genus 3 1 Sulfurimonas 0 5 202746 1241 693 39766 0 Sulfurimonas denitrificans 1 species 0 Sulfurimonas autotrophica 543 202747 species 1 genus 1 0 286130 172 species 1 0 Sulfuricurvum kujiense 148813 172 41 1 family 33371 72294 69 Campylobacteraceae 0 2321108 9460 0 5 no rank 28196 38 4788 0 Arcobacter 3 1 genus Arcobacter butzleri 0 28197 2847 species 1 species 1 Arcobacter nitrofigilis 0 28199 1903 0 2496 2321207 no rank 1 species 1 Arcobacter sp. L 0 2496 944547 2321187 2176 0 1 genus Arcobacter sp. LPB0137 0 2176 1850254 species 1 2654 57665 41 0 Sulfurospirillum 9 1 genus 0 Sulfurospirillum deleyianum 348 65553 species 1 species 1 0 Sulfurospirillum multivorans 66821 234 3 no rank 1231 2618290 0 1986224 353 0 Sulfurospirillum sp. SL2-1 1 species 0 Sulfurospirillum sp. UCH001 1581011 510 species 1 Sulfurospirillum sp. JPD-1 0 220622 368 species 1 1 species 246 194424 Sulfurospirillum halorespirans 0 157 366522 Sulfurospirillum cavolei 0 1 species species 1 Sulfurospirillum barnesii 0 397 44674 genus 26 1 0 Campylobacter 21188 194 164 Campylobacter volucris 0 1031542 885 species 1 species 1 0 Campylobacter iguaniorum 431 1244531 species 1 Campylobacter ureolyticus 0 827 958 443 28898 Campylobacter helveticus 0 1 species 488546 865 0 Campylobacter peloridis 1 species 1 species 1965231 1367 Campylobacter pinnipediorum 0 0 2590 2593542 no rank 4 species 1 0 Campylobacter sp. RM8964 572 1660074 1 species 1660073 487 Campylobacter sp. RM6137 0 1500960 990 0 Campylobacter sp. RM16704 1 species 1 species 1660076 541 Campylobacter sp. RM12175 0 141 200 0 Campylobacter curvus 1 species Campylobacter sputorum 0 206 1385 species 1 species 1 Campylobacter jejuni 0 1880 197 374106 597 0 Campylobacter cuniculorum 1 species 0 Campylobacter coli 195 1486 species 1 species 1 Campylobacter gracilis 0 824 126 1 species 75658 401 Campylobacter lanienae 0 0 Campylobacter hominis 76517 462 species 1 201 2393 0 Campylobacter lari 1 species 1 species 1082 260714 Campylobacter insulaenigrae 0 1 species 497724 890 Campylobacter subantarcticus 0 196 912 Campylobacter fetus 0 1 species species 1 0 Campylobacter concisus 529 199 0 Campylobacter avium 522485 465 species 1 0 Campylobacter hyointestinalis 198 736 species 1 0 2498710 290 clade 4 phylum 4 0 290 67814 1 693071 290 0 Caldisericia 4 1 class 289 3 693072 Caldisericales 0 3 1 order 0 693073 286 family 2 genus 1 2 Caldisericum 0 286 693074 1 1 species 693075 285 Caldisericum exile 0 18 phylum 57723 2054 0 0 Blastocatellia 182 2 1562566 class 2 1 180 458032 0 1 genus Chloracidobacterium thermophilum 0 180 458033 species 1 9 204432 1872 0 Acidobacteriia 16 1 class 1 11 order 21 204433 1513 0 Acidobacteriales 1492 18 204434 Acidobacteriaceae 0 1 10 family genus 1 2 0 Candidatus Koribacter 192 658061 3 species 1 0 Candidatus Koribacter versatilis 658062 189 400 3 392733 Terriglobus 0 1 3 genus 0 Terriglobus saanensis 265 870903 species 1 392734 132 0 Terriglobus roseus 1 species genus 1 3 0 Granulicella 561 940557 6 1 species 183 940614 Granulicella mallensis 0 Granulicella tundricola 0 940615 372 species 1 33973 321 0 1 genus 33075 321 0 Acidobacterium capsulatum 1 species Solibacterales 0 350 6 332160 order 1 4 3 1 family 8 332161 344 Solibacteraceae 0 genus 2 1 Candidatus Solibacter 0 4 332162 336 species 1 Candidatus Solibacter usitatus 0 332 332163 phylum 24 0 25081 32066 24 1 class 22 203490 25081 Fusobacteriia 0 23 1 order 203491 40 25059 Fusobacteriales 0 Fusobacteriaceae 0 15 203492 19365 family 12 1 genus 2 1 0 Ilyobacter 631 2 167639 Ilyobacter polytropus 0 167642 629 species 1 848 96 18719 Fusobacterium 0 1 9 genus 0 Fusobacterium periodonticum 860 3624 species 1 species 1 Fusobacterium gonidiaformans 0 656 849 1 species 7382 851 Fusobacterium nucleatum 0 1 species 1106 850 0 Fusobacterium mortiferum species 1 Fusobacterium ulcerans 0 861 1133 1583098 2122 0 Fusobacterium hwasookii 1 species 1 species 402 859 0 Fusobacterium necrophorum 1 species 2198 856 Fusobacterium varium 0 4 1129771 5654 0 Leptotrichiaceae 1 10 family genus 1 0 723 168808 Sneathia amnii 0 187101 723 species 1 1114 2 34104 Streptobacillus 0 2 1 genus species 1 Streptobacillus moniliformis 0 34105 1112 1 genus 668 32068 0 0 Sebaldella termitidis 826 668 species 1 0 Leptotrichia 18 32067 3145 genus 5 1 species 1 0 Leptotrichia buccalis 40542 801 3 no rank 2326 2633022 0 712357 684 Leptotrichia sp. oral taxon 212 0 1 species 1785996 845 0 Leptotrichia sp. oral taxon 847 1 species 1 species 797 712368 0 Leptotrichia sp. oral taxon 498 clade 1639 0 1348399 1783272 35 phylum 2580 200795 0 0 343 1382928 class 3 order 3 1 0 Ardenticatenales 343 1382929 8 335 1382930 2 0 Ardenticatenaceae 1 2 family genus 1 0 1988031 333 1806508 333 0 Candidatus Promineofilum breve 1 species 1 6 class 342 1 189775 0 Thermomicrobia 82 189776 0 1 order 82 189777 0 1 family 0 82 499 genus 1 0 Thermomicrobium roseum 500 82 species 1 259 85000 0 4 subclass 4 1 order 2 85001 259 0 Sphaerobacterales 3 suborder 255728 257 0 0 Sphaerobacteraceae 1 85002 257 family 3 1 genus 2 1 0 Sphaerobacter 1 2056 256 species 1 Sphaerobacter thermophilus 0 255 2057 Anaerolineae 0 292625 1 370 class 1 6 order 1 5 Anaerolineales 0 369 4 292629 1 4 family 365 2 292628 0 Anaerolineaceae 0 152 2019482 genus 1 species 1 0 Brevefilum fermentans 1986204 152 0 82 1324991 no rank 1 Anaerolineaceae bacterium oral taxon 439 0 1889813 82 species 1 0 129 233189 genus 1 1 species 129 167964 Anaerolinea thermophila 0 1 6 class 484 4 301297 0 Dehalococcoidia genus 3 1 0 Dehalogenimonas 188 5 670486 Dehalogenimonas lykanthroporepellens 0 91 552810 species 1 species 1 Dehalogenimonas formicexedens 0 92 1839801 2 order 1202465 292 0 0 292 1202464 family 2 2 genus 292 61434 0 0 55 237581 no rank 1 55 1522671 0 Dehalococcoides sp. UCH007 1 species 0 Dehalococcoides mccartyi 61435 237 species 1 3 class 475962 186 0 order 1 3 0 Caldilineales 5 475963 186 475964 181 0 2 family 181 7 233191 Caldilinea 0 1 2 genus 1 species 174 133453 Caldilinea aerophila 0 class 1 11 Chloroflexia 0 855 4 32061 32064 4 851 0 Chloroflexales 1 10 order suborder 5 0 1508594 459 Chloroflexaceae 0 459 2 1106 family 1 5 457 5 1107 0 Chloroflexus 1 4 genus 2 1 species 252 127 1108 0 Chloroflexus aurantiacus 1 strain 125 480224 0 Chloroflexus sp. Y-400-fl species 1 0 Chloroflexus aggregans 200 152260 suborder 4 0 1508595 388 1 4 family 2 1508635 388 0 Roseiflexaceae 3 1 genus 386 1 120961 0 Roseiflexus Roseiflexus castenholzii 0 192 120962 species 1 1 no rank 2609473 193 0 1 species 357808 193 0 Roseiflexus sp. RS-1 162097 12 201174 0 Actinobacteria 1 619 phylum 1752188 794 0 4 no rank 1 species 197 1848755 0 Actinobacteria bacterium IMCC26077 1 species 180 1848756 Actinobacteria bacterium IMCC26103 0 0 Actinobacteria bacterium IMCC25003 1848255 158 species 1 0 Actinobacteria bacterium IMCC19121 1848754 259 species 1 class 6 0 671 84992 order 1 6 0 Acidimicrobiales 671 4 84993 3 84994 205 Acidimicrobiaceae 0 3 1 family genus 1 2 0 Acidimicrobium 202 53634 2 53635 200 Acidimicrobium ferrooxidans 0 1 species 0 2448023 462 family 2 0 Ilumatobacter 462 682522 3 genus 2 1 species 1 0 Ilumatobacter coccineus 467094 459 84995 438 0 5 class 438 6 84996 Rubrobacterales 0 1 5 order 0 Rubrobacteraceae 11 84997 432 family 4 1 3 1 genus 421 2 42255 0 Rubrobacter 1 species 42256 193 Rubrobacter radiotolerans 0 1 species 49319 226 Rubrobacter xylanophilus 0 4 class 1497346 1554 0 4 1 order 1554 588673 7 Solirubrobacterales 0 3 1 family 6 320583 1547 Conexibacteraceae 0 191494 3 1541 0 Conexibacter 2 1 genus species 1 Conexibacter woesei 0 1538 191495 class 573 1 0 Actinobacteria 155866 474 1760 order 2 0 122 1643683 0 122 85032 family 2 genus 2 1 Acidothermus 0 122 28048 4 species 1 Acidothermus cellulolyticus 0 28049 118 order 20 1 0 Micromonosporales 5549 7 85008 Micromonosporaceae 0 52 28056 5542 family 1 19 Micromonospora 0 4 1873 1173 genus 1 4 species 1 0 Verrucosispora maris 300 1003110 1 species 407 47850 Micromonospora aurantiaca 0 no rank 1 0 2617518 462 0 Micromonospora sp. L5 648999 462 species 1 1 3 genus 168694 2 507 0 Salinispora 1 species 168695 279 Salinispora tropica 0 species 1 Salinispora arenicola 0 226 168697 1 6 genus 2404 1865 33 Actinoplanes 0 3 no rank 2626549 1437 0 1 species 498 2033844 Actinoplanes sp. SE50 0 1 species 498 134676 Actinoplanes sp. SE50/110 0 0 Actinoplanes sp. N902-109 441 649831 species 1 1866 438 Actinoplanes missouriensis 0 1 species 1 species 196914 496 0 Actinoplanes friuliensis 84593 6 0 Verrucosispora 1 genus genus 1 4 0 Plantactinospora 13 673534 1400 3 no rank 2631981 1387 0 399 2108470 Plantactinospora sp. BC1 0 1 species species 1 Plantactinospora sp. BB1 0 2071627 501 2024580 487 Plantactinospora sp. KBS50 0 1 species 0 1643682 1129 order 7 7 1 family 15 85030 1129 0 Geodermatophilaceae 1 2 genus 427 1 88138 0 Modestobacter 477641 426 0 Modestobacter marinus 1 species 1 1860 390 0 Geodermatophilus 2 1 genus species 1 Geodermatophilus obscurus 0 1861 389 5 38501 297 0 Blastococcus 1 2 genus 1 species 292 138336 0 Blastococcus saxobsidens order 17 1 0 Actinomycetales 4 2037 1991 Actinomycetaceae 0 1987 28 2049 family 16 1 genus 1 0 112 1069494 1661 112 0 Trueperella pyogenes 1 species 72 1653174 0 1 genus 1 species 59505 72 Actinotignum schaalii 0 0 2050 211 genus 1 species 1 0 Mobiluncus curtisii 211 2051 105 28263 1 0 Arcanobacterium 1 2 genus 1 species 28264 104 Arcanobacterium haemolyticum 0 0 Actinomyces 1387 20 1654 genus 1 9 Actinomyces oris 0 544580 137 species 1 1 species 111015 320 0 Actinomyces radicidentis 3 no rank 2609248 602 0 species 1 0 Actinomyces sp. Chiba101 1851395 182 2081702 163 0 Actinomyces sp. oral taxon 897 1 species Actinomyces sp. oral taxon 414 0 257 712122 species 1 1 species 155 1960083 0 Actinomyces gaoshouyii Actinomyces sp. VUL4_3 0 89 1912795 species 1 Actinomyces pacaensis 0 1852377 64 species 1 1 genus 72 2529408 0 52773 72 0 Actinomyces meyeri 1 species 3715 85013 37 0 Frankiales 7 1 order 6 1 family 12 74712 3678 0 Frankiaceae 0 Frankia 17 1854 3666 genus 1 5 0 Frankia casuarinae 658 106370 species 1 0 Frankia alni 2001 1859 species 1 no rank 1 0 517 2632575 517 298653 0 Frankia sp. EAN1pec 1 species 1 species 298654 473 Frankia inefficax 0 order 4 1 Kineosporiales 0 622452 1 476 family 1 3 Kineosporiaceae 0 83778 2 475 genus 1 2 0 Kineococcus 33981 3 473 Kineococcus radiotolerans 0 131568 470 species 1 order 12 1 0 Candidatus Nanopelagicales 19 2039638 3295 11 family 3276 2162846 0 genus 4 1 0 Candidatus Nanopelagicus 1666 9 2039639 0 Candidatus Nanopelagicus abundans 664 1884916 species 1 1 species 472 1884915 0 Candidatus Nanopelagicus hibericus 521 1884634 Candidatus Nanopelagicus limnes 0 1 species 1610 12 622681 Candidatus Planktophila 0 1 7 genus species 1 0 Candidatus Planktophila sulfonica 129 1884904 species 1 Candidatus Planktophila versatilis 0 1884905 291 Candidatus Planktophila limnetica 0 573600 368 species 1 species 1 Candidatus Planktophila lacus 0 229 1884913 295 1884914 0 Candidatus Planktophila dulcis 1 species 1 species 1884907 286 0 Candidatus Planktophila vernalis no rank 2 0 1643818 288 Thermobispora 0 288 3 147067 genus 2 1 1 species 285 2006 Thermobispora bispora 0 order 31 1 Propionibacteriales 0 24 85009 4832 family 1 13 0 Nocardioidaceae 2477 22 85015 2 1 genus 7 116071 188 0 Micropruina 1 species 181 75385 Micropruina glycogenica 0 1 2 genus 467 2044 2 Pimelobacter 0 1 species 465 2045 0 Pimelobacter simplex 1 2 genus 340 2040 5 Aeromicrobium 0 species 1 0 Aeromicrobium erythreum 2041 335 29 1839 1048 0 Nocardioides 1 4 genus 2615069 334 0 1 no rank species 1 Nocardioides sp. JS614 0 196162 334 0 Nocardioides sp. 78 240 2045452 species 1 Nocardioides dokdonensis 0 450734 445 species 1 Kribbella 0 412 182639 9 genus 2 1 1 species 403 182640 Kribbella flavida 0 family 17 1 Propionibacteriaceae 0 2331 45 31957 2 1 genus 3 29404 254 Microlunatus 0 species 1 Microlunatus phosphovorus 0 251 29405 1 genus 95 203133 0 0 2633994 95 no rank 1 species 1 0 Propionimicrobium sp. Marseille-P3275 1871034 95 1912215 253 0 1 genus Acidipropionibacterium acidipropionici 0 253 1748 species 1 72763 5 810 Tessaracoccus 0 1 5 genus 1 species 399497 200 0 Tessaracoccus flavescens 210 2635419 0 1 no rank 1 species 210 1909732 Tessaracoccus sp. T2.5-30 0 species 1 Tessaracoccus aquimaris 0 232 1332264 species 1 Tessaracoccus flavus 0 1610493 163 1 4 genus 1912216 2 350 0 Cutibacterium 73 33011 0 Cutibacterium granulosum 1 species 1 species 114 33010 Cutibacterium avidum 0 species 1 0 Cutibacterium acnes 1747 161 genus 2 0 1743 368 2608905 60 0 1 no rank 60 671223 Propionibacterium sp. oral taxon 193 0 1 species Propionibacterium freudenreichii 0 1744 308 species 1 0 2801844 156 genus 1 species 1 Pseudopropionibacterium propionicum 0 156 1750 1 160 order 35207 145 85007 0 Corynebacteriales family 31 1 0 Nocardiaceae 16 85025 9116 1 23 genus 6536 1827 155 Rhodococcus 0 species 1 Rhodococcus jostii 0 387 132919 1 species 422 1830 0 Rhodococcus ruber 0 Rhodococcus pyridinivorans 103816 285 species 1 397 1833 0 Rhodococcus erythropolis 1 species 209 1829 0 Rhodococcus rhodochrous 1 species 0 Rhodococcus qingshengii 334542 181 species 1 0 Rhodococcus aetherivorans 191292 376 species 1 species 1 Rhodococcus opacus 0 37919 1172 Rhodococcus hoagii 0 329 43767 species 1 1 species 267 1828 0 Rhodococcus fascians no rank 12 0 192944 2356 0 Rhodococcus sp. H-CA8f 1727214 175 species 1 0 Rhodococcus sp. BH4 1807790 113 species 1 Rhodococcus sp. PBTS 1 0 1653478 290 species 1 1723645 147 Rhodococcus sp. 008 0 1 species Rhodococcus sp. WB1 0 1033922 368 species 1 Rhodococcus sp. WMMA185 0 137 679318 species 1 Rhodococcus sp. 2G 0 1570939 155 species 1 Rhodococcus sp. MTM3W5.2 0 1805827 298 species 1 205 935199 Rhodococcus sp. p52 0 1 species 1564114 170 0 Rhodococcus sp. B7740 1 species 1653479 163 Rhodococcus sp. PBTS 2 0 1 species Rhodococcus sp. YL-1 0 1045808 135 species 1 1 7 genus 2564 1817 24 0 Nocardia 1 species 340 455432 Nocardia terpenica 0 37330 328 0 Nocardia nova 1 species 302 37332 Nocardia seriolae 0 1 species 1 species 424 135487 0 Nocardia cyriacigeorgica 37326 729 Nocardia brasiliensis 0 1 species 1 species 37329 417 Nocardia farcinica 0 0 133 316606 family 2 286801 5 133 0 Segniliparus 2 1 genus 286802 128 Segniliparus rotundus 0 1 species no rank 1 0 697024 79 1 genus 79 1847725 0 79 1528099 0 Lawsonella clevelandensis 1 species family 1 9 Gordoniaceae 0 1578 2 85026 0 Gordonia 1576 8 2053 genus 1 8 84595 243 Gordonia polyisoprenivorans 0 1 species 189 1004901 Gordonia iterans 0 1 species no rank 2 0 406 2657482 337191 250 Gordonia sp. KTR9 0 1 species species 1 0 Gordonia sp. YC-JH1 156 2059875 2054 289 Gordonia bronchialis 0 1 species 1 species 1136941 218 0 Gordonia phthalatica 0 Gordonia terrae 223 2055 species 1 1 4 family 2 85028 623 Tsukamurellaceae 0 Tsukamurella 0 621 2060 4 genus 1 3 Tsukamurella paurometabola 0 228 2061 species 1 species 1 0 Tsukamurella tyrosinosolvens 57704 389 1 52 family 1653 27 7011 Corynebacteriaceae 0 6984 97 1716 Corynebacterium 0 1 51 genus species 1 Corynebacterium glutamicum 0 301 1718 1 species 210 38305 0 Corynebacterium vitaeruminis 1 species 1072256 770 0 Corynebacterium uterequi 1 species 129 92706 0 [Brevibacterium] flavum 0 Corynebacterium striatum 204 43770 species 1 1697 73 Corynebacterium ammoniagenes 0 1 species 1 species 35757 143 0 Corynebacterium cystitidis 1 species 82 1705 0 Corynebacterium stationis 0 Corynebacterium deserti 160 1408191 species 1 161 225326 Corynebacterium halotolerans 0 1 species 1 species 146827 95 Corynebacterium simulans 0 1 species 571915 87 Corynebacterium mustelae 0 0 Corynebacterium singulare 73 161899 species 1 160386 118 Corynebacterium casei 0 1 species 1 species 139 1121358 0 Corynebacterium doosanense 1652495 78 0 Corynebacterium crudilactis 1 species 169292 59 Corynebacterium aurimucosum 0 1 species species 1 0 Corynebacterium kroppenstedtii 161879 54 species 1 0 Corynebacterium urealyticum 43771 86 0 Corynebacterium falsenii 93 108486 species 1 species 1 Corynebacterium variabile 0 1727 215 species 1 Corynebacterium atypicum 0 191610 90 1230998 196 Corynebacterium frankenforstense 0 1 species 106 65058 Corynebacterium ulcerans 0 1 species 0 Corynebacterium lactis 1231000 79 species 1 0 Corynebacterium pseudotuberculosis 135 1719 species 1 species 1 Corynebacterium glaucum 0 187491 105 species 1 Corynebacterium imitans 0 100 156978 Corynebacterium jeikeium 0 38289 158 species 1 1 species 165 575200 Corynebacterium maris 0 152794 86 0 Corynebacterium efficiens 1 species 2624378 157 0 2 no rank species 1 0 Corynebacterium sp. NML98-0116 103 702967 54 1487956 Corynebacterium sp. ATCC 6931 0 1 species 1717 146 0 Corynebacterium diphtheriae 1 species species 1 Corynebacterium flavescens 0 28028 83 161 89154 0 Corynebacterium terpenotabidum 1 species species 1 0 Corynebacterium callunae 114 1721 Corynebacterium marinum 0 349751 171 species 1 0 Corynebacterium epidermidicanis 1050174 63 species 1 Corynebacterium kutscheri 0 138 35755 species 1 Corynebacterium glyciniphilum 0 110 1404244 species 1 258224 64 Corynebacterium resistens 0 1 species species 1 0 Corynebacterium camporealensis 70 161896 Corynebacterium testudinoris 0 136857 132 species 1 1 species 42817 142 Corynebacterium argentoratense 0 233 1223514 0 Corynebacterium humireducens 1 species 1 species 401472 116 Corynebacterium ureicelerivorans 0 species 1 Corynebacterium aquilae 0 203263 157 species 1 0 Corynebacterium phocae 84 161895 1 species 191493 196 Corynebacterium sphenisci 0 3 family 85029 561 0 1 3 genus 37914 6 561 0 Dietzia 499555 192 Dietzia timorensis 0 1 species 0 2617939 363 no rank 1 species 1 Dietzia sp. oral taxon 368 0 363 712270 57 1 family 15961 26 1762 0 Mycobacteriaceae 140 1 697025 Hoyosella 0 2 1 genus species 1 Hoyosella subflava 0 139 639313 genus 34 1 Mycobacterium 0 7824 1763 300 1 species 205 261524 Mycobacterium liflandii 0 1 species 1769 42 0 Mycobacterium leprae 220 1809 Mycobacterium ulcerans 0 1 species 1 species 482462 299 Mycobacterium dioxanotrophicus 0 species 1 0 Mycobacterium kansasii 1768 187 species group 1 0 2249310 191 191 722731 0 Mycobacterium shigaense 1 species species group 8 0 120793 2335 species 1 Mycobacterium paraintracellulare 0 1138383 82 1 species 1764 1279 0 Mycobacterium avium 612 1767 148 Mycobacterium intracellulare 0 1 4 species 99 35617 Mycobacterium indicus pranii 0 1 subspecies Mycobacterium yongonense 0 132 1203599 subspecies 1 subspecies 1 0 Mycobacterium chimaera 233 222805 701042 173 0 Mycobacterium marseillense 1 species 189 339268 0 Mycobacterium colombiense 1 species 0 77643 652 species group 4 121 78331 Mycobacterium canettii 0 1 species species 1 3 Mycobacterium tuberculosis 0 192 1773 531 1 biotype 1765 180 0 Mycobacterium bovis biotype 1 0 Mycobacterium africanum 33894 159 species 1 0 Mycobacterium haemophilum 29311 129 0 2903 2642494 no rank 13 species 1 0 Mycobacterium sp. EPa45 1545728 187 0 Mycobacterium sp. YC-RL4 1682113 232 species 1 0 Mycobacterium sp. PYR15 2051552 236 species 1 1 species 245 189918 0 Mycobacterium sp. KMS species 1 0 Mycobacterium sp. NRRL B-3805 1570328 183 1 species 125 1561223 Mycobacterium sp. QIA-37 0 Mycobacterium sp. MOTT36Y 0 80 1168287 species 1 243 1879023 0 Mycobacterium sp. djl-10 1 species Mycobacterium sp. VKM Ac-1817D 0 1273687 223 species 1 1 species 228 1920667 0 Mycobacterium sp. WY10 0 Mycobacterium sp. JS623 460 212767 species 1 241 164757 0 Mycobacterium sp. JLS 1 species 0 Mycobacterium sp. MCS 220 164756 species 1 species 1 0 Mycobacterium marinum 1781 361 0 1073531 469 genus 2 1 species 226 875328 Mycobacterium sinense 0 243 1788 Mycobacterium terrae 0 1 species genus 13 0 1866885 3702 0 Mycobacterium goodii 257 134601 species 1 0 Mycobacterium gilvum 1804 502 species 1 0 Mycobacterium smegmatis 1772 291 species 1 Mycobacterium phlei 0 1771 319 species 1 species 1 0 Mycobacterium neoaurum 183 1795 Mycobacterium fortuitum 0 1766 212 species 1 Mycobacterium vanbaalenii 0 344 110539 species 1 species 1 0 Mycobacterium litorale 184 758802 223 36814 Mycobacterium rhodesiae 0 1 species 0 Mycobacterium thermoresistibile 1797 204 species 1 1 species 367 1791 0 Mycobacterium aurum 0 Mycobacterium chubuense 1800 287 species 1 0 Mycobacterium vaccae 1810 329 species 1 0 3800 670516 genus 5 Mycobacterium abscessus 0 36809 2728 species 1 Mycobacterium saopaulense 0 126 1578165 species 1 156 1520670 Mycobacterium stephanolepidis 0 1 species 0 Mycobacterium immunogenum 619 83262 species 1 1 species 171 1774 Mycobacterium chelonae 0 order 2 0 263 1643684 1 85031 263 0 Nakamurellaceae 2 1 family 1 genus 53460 262 0 1 species 53461 262 0 Nakamurella multipartita order 82 1 0 Streptomycetales 73 85011 52554 0 Streptomycetaceae 131 2062 52481 family 1 81 genus 1 75 0 Streptomyces 590 1883 49259 75293 3118 Streptomyces autolyticus 0 1 species 1 species 1181 1912 0 Streptomyces hygroscopicus Streptomyces pristinaespiralis 0 430 38300 species 1 1 species 193462 481 0 Streptomyces niveus 1 species 365 68192 0 Streptomyces cyaneogriseus 1355015 377 Streptomyces pluripotens 0 1 species Streptomyces collinus 0 418 42684 species 1 1 species 1437453 466 0 Streptomyces leeuwenhoekii 921 379067 0 Streptomyces bingchenggensis 1 species species 1 Streptomyces sp. S10(2016) 0 1783515 478 0 Streptomyces peucetius 1950 365 species 1 1 species 596 553510 Streptomyces gilvosporeus 0 406 1940 0 Streptomyces albireticuli 1 species 415 29303 Streptomyces cattleya 0 1 species 0 Streptomyces noursei 609 1971 species 1 species 1 0 Streptomyces chartreusis 1969 417 634 33903 Streptomyces avermitilis 0 1 species 1425 47763 Streptomyces lydicus 0 1 species 1930 697 Streptomyces scabiei 0 1 species 1 species 1915 934 0 Streptomyces lincolnensis species 1 Streptomyces lavendulae 0 626 1914 0 Streptomyces puniciscabiei 164348 486 species 1 species 1 Streptomyces vietnamensis 0 362257 592 1 species 1907 428 Streptomyces glaucescens 0 Streptomyces griseochromogenes 0 554 68214 species 1 species 1 0 Streptomyces violaceusniger 510 68280 24 no rank 2593676 13408 0 1 species 234612 429 Streptomyces sp. TN58 0 species 1 Streptomyces sp. SAT1 0 812 1849967 1 species 444103 530 0 Streptomyces sp. CNQ-509 Streptomyces sp. CdTB01 0 576 1725411 species 1 Streptomyces sp. 3211 0 771 1964449 species 1 Streptomyces sp. PAMC 26508 0 1265601 331 species 1 1 species 601 1972846 0 Streptomyces sp. Sge12 species 1 0 Streptomyces sp. P3 761 2135430 Streptomyces sp. M56 0 1495638 929 species 1 Streptomyces sp. Tue 6075 0 498 1661694 species 1 species 1 Streptomyces sp. CMB-StM0423 0 560 2059884 1649184 470 0 Streptomyces sp. CFMR 7 1 species 2094021 413 0 Streptomyces sp. WAC00288 1 species species 1 0 Streptomyces sp. 4F 1751294 422 species 1 Streptomyces sp. FR-008 0 772 206662 432 862751 Streptomyces sp. SirexAA-E 0 1 species species 1 Streptomyces sp. CLI2509 0 545 1984801 Streptomyces sp. 769 0 1262452 604 species 1 species 1 Streptomyces sp. S8 0 367 1837283 species 1 0 Streptomyces sp. MOE7 1961713 500 Streptomyces sp. CCM_MD2014 0 472 1561022 species 1 1 species 531 1812480 Streptomyces sp. fd1-xmd 0 species 1 0 Streptomyces sp. RTd22 1841249 483 species 1 0 Streptomyces sp. Mg1 465541 599 Streptomyces malaysiensis 0 612 92644 species 1 0 Streptomyces alboflavus 594 67267 species 1 1901 416 0 Streptomyces clavuligerus 1 species 1 species 732 1642299 Streptomyces alfalfae 0 2659 68570 0 Streptomyces albulus 1 species species 1 Streptomyces pratensis 0 1169025 431 1 species 424 146923 Streptomyces parvulus 0 0 1477431 1932 species group 2 1 species 454 42239 0 Streptomyces sampsonii 0 Streptomyces coelicolor 1902 1478 species 1 species 1 Streptomyces ambofaciens 0 1889 566 444 1935 0 Streptomyces violaceoruber 1 species Streptomyces reticuli 0 516 1926 species 1 2 species group 972 629295 0 1482558 513 0 1 species subgroup species 1 Streptomyces globisporus 0 513 1908 0 1482596 459 species subgroup 1 1 species 459 1911 0 Streptomyces griseus species 1 Streptomyces rubrolavendulae 0 285473 512 0 Streptomyces venezuelae 1102 54571 species 1 Streptomyces formicae 0 1616117 832 species 1 1 species 1033 68249 Streptomyces pactum 0 species 1 Streptomyces xinghaiensis 0 542 1038928 1 species 526 1916 Streptomyces lividans 0 species 1 Streptomyces albus 0 1888 1217 1 species 2049881 393 Streptomyces sp. XZHG99 0 1 species 68202 513 0 Streptomyces fulvissimus species 1 Streptomyces xiamenensis 0 408015 364 5 1 genus 3091 11 2063 0 Kitasatospora 0 Kitasatospora albolonga 1302 68173 species 1 no rank 1 0 2633591 537 species 1 0 Kitasatospora sp. MMS16-BH015 537 2018025 species 1 0 Kitasatospora aureofaciens 445 1894 2066 796 Kitasatospora setae 0 1 species 2807 7 85004 0 Bifidobacteriales 1 26 order 10 31953 2800 0 Bifidobacteriaceae 25 1 family 0 196081 81 genus 1 species 1 Scardovia inopinata 0 81 78259 2 1 genus 58 196082 1 0 Parascardovia 0 Parascardovia denticolens 57 78258 species 1 1678 24 2349 Bifidobacterium 0 1 19 genus 1686 55 153 Bifidobacterium catenulatum 0 1 2 species Bifidobacterium kashiwanohense 0 630129 98 subspecies 1 Bifidobacterium dentium 0 104 1689 species 1 0 Bifidobacterium choerinum 35760 217 species 1 88 1684 0 Bifidobacterium asteroides 1 species 1 species 1685 254 Bifidobacterium breve 0 species 1 Bifidobacterium coryneforme 0 1687 52 1 species 33905 66 Bifidobacterium thermophilum 0 1 species 82 1683 Bifidobacterium angulatum 0 0 Bifidobacterium actinocoloniiforme 115 638619 species 1 0 Bifidobacterium animalis 28025 111 species 1 0 Bifidobacterium bifidum 1681 132 species 1 Bifidobacterium indicum 0 67 1691 species 1 358 216816 Bifidobacterium longum 0 1 species 1 species 97 1680 0 Bifidobacterium adolescentis 1 species 164 158787 0 Bifidobacterium scardovii 1 species 28026 74 0 Bifidobacterium pseudocatenulatum species 1 0 Bifidobacterium pseudolongum 1694 191 2701 2 302 Gardnerella 0 2 1 genus species 1 Gardnerella vaginalis 0 2702 300 order 1 38 0 Pseudonocardiales 12597 20 85010 37 1 family 12577 79 2070 Pseudonocardiaceae 0 1851 192 0 1 genus 192 1852 Saccharomonospora viridis 0 1 species 451 1 2029 Kibdelosporangium 0 2 1 genus species 1 0 Kibdelosporangium phytohabitans 450 860235 Saccharopolyspora 0 1835 2 445 genus 1 2 0 Saccharopolyspora erythraea 1836 443 species 1 genus 1 0 332 142577 332 530584 Prauserella marina 0 1 species genus 2 1 Kutzneria 0 412 6 43356 406 43357 Kutzneria albida 0 1 species 1 genus 370 674734 0 370 2636053 0 1 no rank 1 species 370 1653480 0 Alloactinosynnema sp. L-07 1 8 genus 32 1847 3350 Pseudonocardia 0 no rank 6 0 2619320 2762 1688404 514 0 Pseudonocardia sp. EC080610-09 1 species 1 species 1641402 409 0 Pseudonocardia sp. HH130629-09 Pseudonocardia sp. EC080619-01 0 1096856 477 species 1 species 1 0 Pseudonocardia sp. HH130630-07 1690815 422 445576 505 0 Pseudonocardia sp. AL041005-10 1 species 1 species 435 1096868 Pseudonocardia sp. EC080625-04 0 1 species 556 240495 Pseudonocardia dioxanivorans 0 genus 1 2 0 Lentzea 505 1 165301 1 species 504 1586287 0 Lentzea guizhouensis genus 1 3 Actinosynnema 0 40566 7 1230 0 Actinosynnema mirum 585 40567 species 1 species 1 0 Actinosynnema pretiosum 42197 638 genus 7 1 0 Amycolatopsis 2863 1813 25 species 1 Amycolatopsis methanolica 0 372 1814 1 species 520 33910 0 Amycolatopsis mediterranei 0 720 2618356 no rank 2 species 1 0 Amycolatopsis sp. AA4 1896961 366 species 1 0 Amycolatopsis sp. BJA-103 1911175 354 Amycolatopsis orientalis 0 31958 798 species 1 1 species 428 208439 0 Amycolatopsis japonica 549 2071 0 1 genus 1 species 103731 549 0 Saccharothrix espanaensis Actinoalloteichus 0 65496 29 1799 genus 1 6 1 species 357 1470176 0 Actinoalloteichus hoggarensis 1 species 493 1612552 Actinoalloteichus sp. ADI127-7 0 2 no rank 2644606 757 0 Actinoalloteichus sp. AHMU CJ021 0 2072503 352 species 1 species 1 0 Actinoalloteichus sp. GBA129-24 1612551 405 1 species 163 340345 Actinoalloteichus hymeniacidonis 0 124 85006 24736 Micrococcales 0 1 136 order family 8 1 0 Intrasporangiaceae 2 85021 1198 1 genus 53357 239 0 53358 239 0 Intrasporangium calvum 1 species 2 1 genus 265976 3 321 Serinicoccus 0 0 Serinicoccus sp. JLT9 318 1758689 species 1 genus 1 2 Janibacter 0 357 10 53457 species 1 Janibacter indicus 0 857417 347 genus 1 2 0 Arsenicicoccus 3 267408 279 0 276 2663846 no rank 1 1 species 276 1658671 Arsenicicoccus sp. oral taxon 190 0 2215 7 85017 Promicromonosporaceae 0 1 9 family 3 1 genus 755 2 254250 0 Isoptericola 0 Isoptericola dokdonensis 373 372663 species 1 1 species 380 139208 Isoptericola variabilis 0 1 3 genus 2 157920 1030 Cellulosimicrobium 0 1 species 486 1710 Cellulosimicrobium cellulans 0 1 no rank 542 2624466 0 species 1 Cellulosimicrobium sp. TH-20 0 1980001 542 genus 2 1 0 Xylanimonas 186188 4 423 1 species 419 186189 0 Xylanimonas cellulosilytica 2 no rank 142 577468 0 0 Tropheryma 2 2038 142 genus 2 1 species 1 Tropheryma whipplei 0 2039 140 426 3 85019 Brevibacteriaceae 0 1 2 family 0 1696 423 genus 1 1 species 1703 423 0 Brevibacterium linens 3 1 family 336 5 145360 Sanguibacteraceae 0 2 1 genus 3 60919 331 Sanguibacter 0 species 1 0 Sanguibacter keddieii 328 60920 15 85020 3192 Dermabacteraceae 0 10 1 family 0 91 36739 genus 1 Dermabacter vaginalis 0 1630135 91 species 1 1 6 genus 2898 15 43668 0 Brachybacterium 43669 247 0 Brachybacterium faecium 1 species 1331682 262 Brachybacterium ginsengisoli 0 1 species species 1 0 Brachybacterium sp. VR2415 193 2017485 Brachybacterium sp. VM2412 0 1895 2017484 species 1 1 no rank 286 2623841 0 1903186 286 Brachybacterium sp. P6-10-X1 0 1 species genus 1 2 0 Devriesea 21 472568 188 0 Devriesea agamarum 472569 167 species 1 family 1 37 0 Micrococcaceae 25 1268 5085 4 1 genus 1742993 3 512 0 Pseudarthrobacter 0 Pseudarthrobacter sulfonivorans 121292 169 species 1 species 1 0 Pseudarthrobacter phenanthrenivorans 195 361575 85085 145 Pseudarthrobacter chlorophenolicus 0 1 species genus 1 0 145 1742989 0 Glutamicibacter arilaitensis 145 256701 species 1 0 75 1645 genus 1 1 species 1646 75 0 Renibacterium salmoninarum 312 2 596707 0 Sinomonas 1 2 genus 1 species 310 37927 Sinomonas atrocyanea 0 0 2078575 101 genus 1 Arthrobacter sp. IHBB 11108 0 1618207 101 species 1 15 1 genus 2669 1663 38 Arthrobacter 0 1 species 156 37928 Arthrobacter crystallopoietes 0 0 Arthrobacter alpinus 338 656366 species 1 12 no rank 2137 235627 0 1806905 135 Arthrobacter sp. ZXY-2 0 1 species species 1 0 Arthrobacter sp. U41 164 1849032 Arthrobacter sp. PGP41 0 526 2079227 species 1 species 1 Arthrobacter sp. ERGS1:01 0 1704044 210 species 1 0 Arthrobacter sp. YC-RL1 128 1652545 1 species 1118963 120 0 Arthrobacter sp. Rue61a 1357915 188 0 Arthrobacter sp. QXT-31 1 species 0 Arthrobacter sp. LS16 131 1690248 species 1 0 Arthrobacter sp. PAMC 25486 1494608 171 species 1 290399 145 0 Arthrobacter sp. FB24 1 species species 1 0 Arthrobacter sp. YN 2020486 123 1 species 96 1771959 0 Arthrobacter sp. ATCC 21022 genus 4 1 0 Kocuria 621 57493 3 0 Kocuria flava 299 446860 species 1 species 1 0 Kocuria palustris 169 71999 72000 150 0 Kocuria rhizophila 1 species 0 Neomicrococcus 1868332 2 102 genus 1 2 species 1 Neomicrococcus aestuarii 0 100 556325 193 32207 3 Rothia 0 3 1 genus species 1 Rothia dentocariosa 0 64 2047 Rothia mucilaginosa 0 43675 126 species 1 1742992 150 0 1 genus Paenarthrobacter aurescens 0 43663 150 species 1 genus 1 2 Micrococcus 0 180 1269 1 species 1 0 Micrococcus luteus 179 1270 1 family 74 85022 0 0 43673 74 genus 1 0 Jonesia denitrificans 74 43674 species 1 0 166 85018 family 1 genus 1 0 166 1862 1 species 166 1863 0 Dermatophilus congolensis 0 Dermacoccaceae 674 16 145357 family 1 6 745364 2 277 Luteipulveratus 0 1 2 genus species 1 Luteipulveratus mongoliensis 0 275 571913 Kytococcus 0 137 57499 5 genus 1 2 species 1 0 Kytococcus sedentarius 132 1276 57495 244 0 1 genus species 1 Dermacoccus nishinomiyaensis 0 244 1274 499 1 125316 0 Beutenbergiaceae 3 1 family 10 84756 498 Beutenbergia 0 2 1 genus 488 84757 0 Beutenbergia cavernae 1 species 1 47 family 9198 41 85023 0 Microbacteriaceae genus 2 1 Pontimonas 0 1434032 3 85 1159327 82 0 Pontimonas salivibrio 1 species 4 1 genus 924 4 2034 Curtobacterium 0 0 644 257496 no rank 2 266 1905847 0 Curtobacterium sp. BH-2-1-1 1 species 1561023 378 0 Curtobacterium sp. MR_MD2014 1 species 1 species 276 69373 0 Curtobacterium pusillum genus 1 0 526 110932 Leifsonia xyli 0 1575 526 species 1 genus 1 3 Cryobacterium 0 69578 5 375 species 1 0 Cryobacterium arcticum 201 670052 1 no rank 2649013 169 0 Cryobacterium sp. LW097 0 169 1978566 species 1 no rank 3 0 211 1655488 3 clade 1655489 211 0 genus 1 3 Rhodoluna 0 529883 7 211 Candidatus Rhodoluna planktonica 0 535712 87 species 1 Rhodoluna lacicola 0 117 529884 species 1 1 33886 409 Rathayibacter 0 3 1 genus Rathayibacter tritici 0 33888 187 species 1 1 species 221 145458 Rathayibacter toxicus 0 1 2 genus 1 447237 781 Frondihabitans 0 780 2626248 0 1 no rank species 1 0 Frondihabitans sp. PAMC 28766 1795630 780 Microterricola 0 1 518733 191 genus 1 2 0 Microterricola viridarii 190 412690 species 1 Cnuibacter 0 280 1 1759331 genus 2 1 0 Cnuibacter physcomitrellae 279 1619308 species 1 0 Clavibacter 1510 21 1573 genus 1 6 1 5 species 28447 332 1489 Clavibacter michiganensis 0 250 31963 Clavibacter nebraskensis 0 1 subspecies subspecies 1 0 Clavibacter sepedonicus 326 31964 subspecies 1 Clavibacter capsici 0 273 1874630 subspecies 1 Clavibacter insidiosus 0 33014 308 genus 1 0 1705353 117 species 1 Aurantimicrobium minutum 0 708131 117 2 1 genus 362 1 33877 Agromyces 0 0 Agromyces aureus 361 453304 species 1 337004 143 0 1 genus Microcella alkaliphila 0 279828 143 species 1 3243 38 33882 0 Microbacterium 1 14 genus Microbacterium chocolatum 0 84292 226 species 1 36805 297 Microbacterium aurum 0 1 species species 1 0 Microbacterium hominis 162426 265 species 1 0 Microbacterium testaceum 265 2033 species 1 Microbacterium paludicola 0 300019 236 8 no rank 1916 2609290 0 species 1 Microbacterium sp. No. 7 0 432 1714373 210 367477 0 Microbacterium sp. XT11 1 species 1906742 273 0 Microbacterium sp. BH-3-3-3 1 species 176 1795053 Microbacterium sp. PAMC 28756 0 1 species species 1 Microbacterium sp. TPU 3598 0 231 1938334 Microbacterium sp. 1.5R 0 1916917 184 species 1 1 species 208 2103230 Microbacterium sp. str. 'China' 0 1 species 202 1696072 Microbacterium sp. CGR1 0 family 6 1 Cellulomonadaceae 0 3 85016 1407 genus 5 1 Cellulomonas 0 1404 11 1707 2620175 334 0 1 no rank 0 Cellulomonas sp. PSBB021 334 2003551 species 1 1 species 244 11 0 Cellulomonas gilvus species 1 0 Cellulomonas fimi 1708 420 species 1 0 Cellulomonas flavigena 1711 395 3 order 85014 310 0 85034 9 310 0 Glycomycetaceae 1 3 family 0 Stackebrandtia 301 283810 3 genus 1 2 0 Stackebrandtia nassauensis 298 283811 species 1 4 1 order 6 414714 1918 Catenulisporales 0 0 Catenulisporaceae 13 414877 1912 family 3 1 1899 2 414878 0 Catenulispora 2 1 genus 1 species 304895 1897 Catenulispora acidiphila 0 0 622450 185 order 3 family 3 1 Actinopolysporaceae 0 622451 2 185 1 2 genus 183 1849 4 0 Actinopolyspora Actinopolyspora erythraea 0 414996 179 species 1 3152 13 85012 0 Streptosporangiales 1 15 order 0 Streptosporangiaceae 5 2004 1574 family 5 1 3 2000 679 Streptosporangium 0 1 2 genus Streptosporangium roseum 0 676 2001 species 1 3 83681 890 Nonomuraea 0 1 2 genus 887 2593643 0 1 no rank 0 Nonomuraea sp. ATCC 55076 887 1909395 species 1 family 6 1 0 Nocardiopsaceae 1279 83676 2 genus 1 4 Nocardiopsis 0 1146 11 2013 53437 271 Nocardiopsis alba 0 1 species species 1 Nocardiopsis gilva 0 402 280236 species 1 Nocardiopsis dassonvillei 0 462 2014 0 83677 131 genus 1 1 species 2021 131 0 Thermobifida fusca 286 6 2012 0 Thermomonosporaceae 3 1 family 2 1 genus 2019 1 280 0 Thermomonospora 1 species 279 2020 Thermomonospora curvata 0 0 266 52018 no rank 1 266 1650658 Actinobacteria bacterium IMCC26256 0 1 species class 1 26 0 Coriobacteriia 5 84998 2762 order 1 12 0 Eggerthellales 17 1643822 1607 family 1 11 0 Eggerthellaceae 41 1643826 1590 0 1981050 223 genus 1 1 species 1944646 223 0 Phoenicibacter massiliensis genus 2 0 84111 359 0 104 2648737 no rank 1 species 1 0 Eggerthella sp. YY7918 104 502558 species 1 0 Eggerthella lenta 84112 255 1 3 genus 515 12 644652 Gordonibacter 0 Gordonibacter massiliensis 0 1841863 277 species 1 species 1 0 Gordonibacter urolithinfaciens 226 1335613 genus 1 0 98 79603 1 species 79604 98 0 Denitrobacterium detoxificans 113 84162 0 1 genus 84163 113 0 Cryptobacterium curtum 1 species 0 103 84108 genus 1 1 species 84110 103 Slackia heliotrinireducens 0 447020 138 0 1 genus 0 Adlercreutzia equolifaciens 446660 138 species 1 0 Coriobacteriales 1150 13 84999 order 1 13 7 1 family 4 1643824 780 0 Atopobiaceae genus 1 Atopobium 0 11 1380 genus 4 1 Olsenella 0 595 16 133925 221 1805478 0 Olsenella sp. Marseille-P2300 1 species no rank 1 0 2638792 220 220 712411 0 Olsenella sp. oral taxon 807 1 species 133926 138 Olsenella uli 0 1 species 0 170 2767353 genus 1 0 Atopobium parvulum 170 1382 species 1 84107 357 0 5 family 91 14 33870 Coriobacterium 0 1 2 genus 33871 77 Coriobacterium glomerans 0 1 species 1 no rank 84113 141 0 1 species 1531429 141 0 Coriobacteriaceae bacterium 68-1-3 genus 1 2 Collinsella 0 125 6 102106 0 Collinsella aerofaciens 74426 119 species 1 0 Tenericutes 37439 544448 1 phylum 102 1 35597 109 31969 Mollicutes 0 97 1 class 32 186328 15619 0 Entomoplasmatales 1 39 order 0 Spiroplasmataceae 10900 15 2131 family 24 1 genus 23 1 0 Spiroplasma 2132 154 10885 1 species 638 216942 0 Spiroplasma litorale 2137 368 Spiroplasma apis 0 1 species Spiroplasma helicoides 0 216938 555 species 1 368 216933 Spiroplasma chrysopicola 0 1 species 1 species 1114980 323 0 Spiroplasma atrichopogonis 0 Spiroplasma syrphidicola 381 216945 species 1 species 1 0 Spiroplasma taiwanense 2145 657 216937 745 Spiroplasma floricola 0 1 species 0 Spiroplasma corruscae 216934 560 species 1 655 216935 0 Spiroplasma culicicola 1 species 430 2139 Spiroplasma clarkii 0 1 species 1 species 216946 676 Spiroplasma turonicum 0 2133 414 0 Spiroplasma citri 1 species 1 species 394 2136 Spiroplasma monobiae 0 0 Spiroplasma cantharicola 673 362837 species 1 1 species 216936 565 0 Spiroplasma diminutum species 1 Spiroplasma eriocheiris 0 315358 389 species 1 0 Spiroplasma sabaudiense 216944 379 0 744 2637901 no rank 2 1 species 1898044 372 0 Spiroplasma sp. TU-14 species 1 Spiroplasma sp. NBRC 100390 0 372 1914410 47834 496 Spiroplasma kunkelii 0 1 species 1 species 321 2144 0 Spiroplasma mirum 14 1 family 33925 16 4687 Entomoplasmataceae 0 Mesoplasma 0 77 46239 3260 genus 1 8 393 2149 0 Mesoplasma entomophilum 1 species 1 species 2151 803 Mesoplasma florum 0 species 1 Mesoplasma tabanidae 0 219745 498 0 Mesoplasma syrphidae 225999 377 species 1 0 Mesoplasma chauliocola 436 216427 species 1 1 species 327 138853 0 Mesoplasma lactucae 324078 349 0 Mesoplasma coleopterae 1 species genus 1 5 0 Entomoplasma 1411 24 46238 1 species 215578 435 Entomoplasma somnilux 0 species 1 0 Entomoplasma melaleucae 81459 445 1 species 157 74700 Entomoplasma freundtii 0 350 214888 0 Entomoplasma luminosum 1 species 43 2085 16512 0 Mycoplasmatales 44 1 order 2092 47 16469 Mycoplasmataceae 0 43 1 family 2129 2 800 Ureaplasma 0 3 1 genus Ureaplasma urealyticum 0 2130 325 species 1 134821 473 0 Ureaplasma parvum 1 species 150 2093 10582 0 Mycoplasma 1 27 genus 136241 271 0 Mycoplasma haemocanis 1 species 1 species 178 57372 Mycoplasma suis 0 1 species 284 86660 0 Mycoplasma dispar 1 species 2100 416 0 Mycoplasma hyorhinis 1 species 321 50052 Mycoplasma crocodyli 0 240 2111 0 Mycoplasma arthritidis 1 species 1 species 984991 252 Mycoplasma parvum 0 species 1 0 Mycoplasma penetrans 28227 524 0 Mycoplasma ovis 171632 116 species 1 2683645 321 0 1 no rank 1749074 321 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1 species 558 51365 Mycoplasma yeatsii 0 1 species 65123 90 0 Mycoplasma wenyonii 1 species 1 species 2118 513 0 Mycoplasma mobile 1 species 2104 105 Mycoplasma pneumoniae 0 488 2123 Mycoplasma putrefaciens 0 1 species 1 species 403 29554 Mycoplasma canadense 0 2760 656088 0 3 species group 1314 2102 0 Mycoplasma mycoides 1 species 0 Mycoplasma capricolum 2095 781 species 1 1 species 665 2105 Mycoplasma leachii 0 1 species 2098 590 0 Mycoplasma hominis species 1 0 Mycoplasma hyopneumoniae 440 2099 189 2128 0 Mycoplasma flocculare 1 species species 1 Mycoplasma haemofelis 0 29501 532 species 1 0 Mycoplasma bovoculi 45362 349 0 Mycoplasma genitalium 195 2097 species 1 2096 297 0 Mycoplasma gallisepticum 1 species 2767358 5040 0 12 genus Mycoplasma arginini 0 2094 334 species 1 species 1 Mycoplasma bovis 0 822 28903 1 species 488 2107 Mycoplasma pulmonis 0 species 1 Mycoplasma cynos 0 467 171284 1 species 2115 409 Mycoplasma fermentans 0 species 1 0 Mycoplasma agalactiae 509 2110 1 species 267 2113 0 Mycoplasma californicum Mycoplasma bovirhinis 0 362 29553 species 1 Mycoplasma pullorum 0 292 48003 species 1 492 29555 Mycoplasma canis 0 1 species species 1 Mycoplasma synoviae 0 2109 302 Mycoplasma bovigenitalium 0 296 2112 species 1 order 13 1 Acholeplasmatales 0 3357 186329 6 family 1 12 0 Acholeplasmataceae 3351 23 2146 1 5 genus 8 2147 1779 Acholeplasma 0 Acholeplasma palmae 0 38986 547 species 1 1 species 2148 420 0 Acholeplasma laidlawii Acholeplasma brassicae 0 61635 298 species 1 species 1 Acholeplasma oculi 0 35623 506 genus 6 1 Candidatus Phytoplasma 0 1549 18 33926 0 85630 364 species group 1 species 1 Candidatus Phytoplasma mali 0 364 37692 0 85632 311 species group 1 59748 311 0 Candidatus Phytoplasma australiense 1 species 0 856 85620 species group 3 species 1 0 Maize bushy stunt phytoplasma 281 202462 species 1 Aster yellows witches'-broom phytoplasma 0 288 229545 Onion yellows phytoplasma 0 287 100379 species 1 0 713063 1277 no rank 2 species 1 0 Tenericutes bacterium MZ-XQ 1911683 546 731 1911684 0 Tenericutes bacterium MO-XQ 1 species 0 2799557 564 no rank 2 1 1912503 564 Candidatus Izimaplasma 0 1 2 genus 0 2624196 563 no rank 1 1541959 563 Candidatus Izimaplasma sp. HR1 0 1 species 1 no rank 1859062 135 0 1 genus 135 262406 0 135 166501 Thermobaculum terrenum 0 1 species phylum 1 686 Firmicutes 0 1239 74 270167 Bacilli 0 107 91061 158966 class 423 1 109532 262 1385 Bacillales 0 1 259 order 4 186823 795 0 Alicyclobacillaceae 1 9 family 194 3 29330 0 Alicyclobacillus 1 2 genus 0 Alicyclobacillus acidocaldarius 191 405212 species 1 3 1 genus 1 1129704 338 0 Kyrpidia 1 species 162 2055160 0 Kyrpidia sp. EA-1 species 1 0 Kyrpidia tusciae 175 33943 Tumebacillus 0 259 4 432330 genus 3 1 0 Tumebacillus algifaecis 1214604 91 species 1 0 Tumebacillus avium 164 1903704 species 1 no rank 8 0 539002 1440 952 539742 0 7 no rank 1 7 genus 19 33986 952 0 Exiguobacterium no rank 4 0 2644629 661 0 Exiguobacterium sp. AT1b 95 360911 species 1 1224749 249 0 Exiguobacterium sp. ZWU0009 1 species 1 species 222 1849031 Exiguobacterium sp. U13-1 0 1399115 95 0 Exiguobacterium sp. MH3 1 species 1 species 132920 136 0 Exiguobacterium antarcticum species 1 Exiguobacterium sibiricum 0 332410 136 539738 488 0 1 no rank 0 1378 488 genus 1 no rank 1 0 488 2624949 species 1 Gemella sp. oral taxon 928 0 488 1785995 1 4 family 1 186824 120 Thermoactinomycetaceae 0 0 Laceyella 1 292635 genus 1 1677050 1 118 Novibacillus 0 1 2 genus 0 Novibacillus thermophilus 117 1471761 species 1 41 1 family 23115 69 90964 Staphylococcaceae 0 Salinicoccus 0 2 45669 117 genus 1 2 115 407035 Salinicoccus halodurans 0 1 species 4 1 genus 1063 6 69965 Macrococcus 0 1 species 69966 364 Macrococcus caseolyticus 0 289 1855823 0 Macrococcus canis 1 species 404 2619255 0 1 no rank 404 1898474 0 Macrococcus sp. IME1552 1 species 1 33 genus 180 1279 21445 0 Staphylococcus 1 species 569 1295 0 Staphylococcus schleiferi 643214 647 0 Staphylococcus stepanovicii 1 species 1 species 616 1292 0 Staphylococcus warneri Staphylococcus aureus 0 2187 1280 species 1 Staphylococcus piscifermentans 0 70258 305 species 1 0 Staphylococcus felis 447 46127 species 1 species 1 Staphylococcus xylosus 0 1076 1288 1 species 593 29385 0 Staphylococcus saprophyticus Staphylococcus nepalensis 0 505 214473 species 1 species 1 0 Staphylococcus succinus 61015 600 1516 45972 Staphylococcus pasteuri 0 1 species Staphylococcus hominis 0 631 1290 species 1 407 283734 Staphylococcus pseudintermedius 0 1 species species 1 Staphylococcus epidermidis 0 1331 1282 species 1 Staphylococcus pettenkoferi 0 172 170573 382 1284 Staphylococcus hyicus 0 1 species Staphylococcus sciuri 0 679 1296 species 1 species 1 0 Staphylococcus equorum 860 246432 606 1281 Staphylococcus carnosus 0 1 species Staphylococcus haemolyticus 0 646 1283 species 1 Staphylococcus kloosii 0 594 29384 species 1 species 1 0 Staphylococcus capitis 29388 591 Staphylococcus simulans 0 427 1286 species 1 no rank 1 0 646 91994 1 species 1715860 646 Staphylococcus sp. AntiMn-1 0 1 species 1294 262 0 Staphylococcus muscae 0 Staphylococcus lugdunensis 28035 586 species 1 1 species 70255 504 0 Staphylococcus condimenti 0 Staphylococcus simiae 308354 733 species 1 1 species 333 155085 Staphylococcus lutrae 0 1 species 635 29382 0 Staphylococcus cohnii 0 Staphylococcus argenteus 779 985002 species 1 1 species 400 985762 Staphylococcus agnetis 0 1 genus 2005363 421 0 species 1 Auricoccus indicus 0 421 1849491 0 Planococcaceae 7813 186818 23 family 1 26 0 Solibacillus 3 648800 1038 genus 3 1 0 Solibacillus silvestris 517 76853 species 1 0 518 2637870 no rank 1 Solibacillus sp. R5-41 0 518 2048654 species 1 394 2 648802 Rummeliibacillus 0 2 1 genus 0 Rummeliibacillus stabekisii 392 241244 species 1 1 12 genus 35 1372 3310 Planococcus 0 1215089 492 0 Planococcus halocryophilus 1 species 0 Planococcus sp. L10.15 398 1302659 species 1 species 1 0 Planococcus kocurii 1374 308 no rank 2 0 2662419 586 0 Planococcus sp. MB-3u-03 2058136 120 species 1 466 1526927 Planococcus sp. PAMC 21323 0 1 species 0 Planococcus maritimus 236 192421 species 1 species 1 0 Planococcus antarcticus 250 161360 species 1 Planococcus faecalis 0 355 1598147 1 species 414778 403 0 Planococcus donghaensis species 1 Planococcus plakortidis 0 1038856 105 species 1 0 Planococcus rifietoensis 142 200991 1 genus 157226 448 0 1 species 448 1508404 0 Jeotgalibacillus malaysiensis 1 2 genus 445 1649 3 0 Kurthia 2644826 442 0 1 no rank 1750719 442 0 Kurthia sp. 11kri321 1 species 1569 11 2155 Sporosarcina 0 1 5 genus species 1 0 Sporosarcina psychrophila 1476 745 2 no rank 2647733 381 0 1 species 1930546 160 Sporosarcina sp. P37 0 species 1 0 Sporosarcina sp. P33 221 1930764 species 1 0 Sporosarcina ureae 1571 1018 24 186822 14451 0 Paenibacillaceae 45 1 family 1 genus 160 76632 0 1 species 377615 160 0 Thermobacillus composti 0 Paenibacillus 12302 44249 76 genus 36 1 species 1 0 Paenibacillus borealis 160799 237 Paenibacillus stellifer 0 169760 126 species 1 species 1 0 Paenibacillus kribbensis 174 172713 Paenibacillus beijingensis 0 207 1126833 species 1 180 1462996 0 Paenibacillus yonginensis 1 species 227 2044880 0 1 species group 227 483937 0 Paenibacillus riograndensis 1 species species 1 Paenibacillus durus 0 335 44251 species 1 Paenibacillus donghaensis 0 620 414771 1 species 1406 1787 Paenibacillus polymyxa 0 Paenibacillus mucilaginosus 0 689 61624 species 1 1 species 588 189425 Paenibacillus graminis 0 species 1 Paenibacillus xylanexedens 0 231 528191 1 species 178 1178515 Paenibacillus swuensis 0 1 species 1464 556 0 Paenibacillus larvae 615 59893 Paenibacillus peoriae 0 1 species 185978 3669 0 13 no rank 1 species 526 1566358 0 Paenibacillus sp. IHBB 10380 Paenibacillus sp. 32O-W 0 1695218 182 species 1 1536774 230 Paenibacillus sp. FSL H7-0357 0 1 species 0 Paenibacillus sp. FSL P4-0081 1536769 370 species 1 species 1 Paenibacillus sp. JDR-2 0 324057 162 1 species 207 1536771 0 Paenibacillus sp. FSL R5-0912 228 1536772 0 Paenibacillus sp. FSL R7-0273 1 species 1 species 284 2069255 0 Paenibacillus sp. lzh-N1 species 1 0 Paenibacillus sp. BIHB4019 1870819 257 species 1 0 Paenibacillus sp. FSL R5-0345 1536770 449 Paenibacillus sp. Y412MC10 0 189 481743 species 1 1 species 1536775 354 0 Paenibacillus sp. FSL H7-0737 1536773 231 Paenibacillus sp. FSL R7-0331 0 1 species 0 Paenibacillus ihbetae 1870820 162 species 1 Paenibacillus terrae 0 159743 241 species 1 Paenibacillus crassostreae 0 377 1763538 species 1 104 365617 Paenibacillus sabinae 0 1 species 1 species 411 1616788 0 Paenibacillus bovis 162209 134 0 Paenibacillus naphthalenovorans 1 species 0 Paenibacillus odorifer 189426 378 species 1 1 4 genus 7 55080 1556 Brevibacillus 0 0 Brevibacillus brevis 435 1393 species 1 species 1 Brevibacillus formosus 0 351 54913 763 1465 0 Brevibacillus laterosporus 1 species 0 409 85151 no rank 3 0 Aneurinibacillus 409 55079 10 genus 1 3 0 194 2642329 no rank 1 1 species 1450761 194 Aneurinibacillus sp. XH2 0 1 species 1500254 205 0 Aneurinibacillus soli family 1 0 186821 192 192 663587 0 1 no rank [Bacillus] selenitireducens 0 192 85683 species 1 1 9 family 186820 11 3784 Listeriaceae 0 Brochothrix 0 2 2755 439 genus 1 2 2756 437 0 Brochothrix thermosphacta 1 species Listeria 0 3334 1637 24 genus 1 6 1 species 721 1638 0 Listeria ivanovii Listeria welshimeri 0 1643 434 species 1 1 species 330 1640 Listeria seeligeri 0 1 species 1642 427 Listeria innocua 0 1398 1639 Listeria monocytogenes 0 1 species 0 Bacillaceae 84 186817 57560 family 1 115 58 1 genus 35842 714 1386 0 Bacillus species 1 Bacillus cellulosilyticus 0 1413 755 Bacillus gibsonii 0 89 79881 species 1 0 Bacillus coagulans 393 1398 species 1 species 1 Bacillus methanolicus 0 1471 443 1 species 732 561879 0 Bacillus safensis 1 species 799 135735 Bacillus endophyticus 0 0 Bacillus beveridgei 632773 165 species 1 1 species 1404 1601 0 Bacillus megaterium 1 species 562 412384 Bacillus aryabhattai 0 1547283 726 Bacillus weihaiensis 0 1 species 1 species 939 33932 0 Bacillus cohnii Bacillus xiamenensis 0 308 1178537 species 1 0 Bacillus smithii 334 1479 species 1 species 1 Bacillus glycinifermentans 0 1664069 293 1 species group 378 1792192 0 1 species 378 293387 0 Bacillus altitudinis 653685 3865 0 9 species group 0 Bacillus licheniformis 1402 328 species 1 43 72361 0 Bacillus vallismortis 1 species species subgroup 3 0 1141 1938374 Bacillus velezensis 0 502 492670 species 1 1 species 566 1390 Bacillus amyloliquefaciens 0 1 species 73 659243 0 Bacillus siamensis 187 119858 Bacillus sonorensis 0 1 species 0 Bacillus atrophaeus 1452 334 species 1 1423 1604 0 Bacillus subtilis 1 species species 1 0 Bacillus paralicheniformis 228 1648923 species group 10 0 86661 16615 155322 504 Bacillus toyonensis 0 1 species species 1 0 Bacillus cereus 5600 1396 1 species 1875 1405 0 Bacillus mycoides species 1 0 Bacillus bombysepticus 517 658666 1392 632 Bacillus anthracis 0 1 species Bacillus cytotoxicus 0 580165 500 species 1 1428 5607 Bacillus thuringiensis 0 1 species 1380 2750818 0 3 no rank species 1 Bacillus sp. HBCD-sjtu 0 406 2053832 0 Bacillus sp. ABP14 1892404 391 species 1 583 1839798 0 Bacillus sp. FDAARGOS_235 1 species 324767 227 0 Bacillus infantis 1 species 564 86664 0 Bacillus flexus 1 species species 1 0 Bacillus pumilus 1408 1419 no rank 19 0 185979 3560 1 species 2026248 146 0 Bacillus sp. 1s-1 1 species 84 1774743 0 Bacillus sp. SDLI1 species 1 Bacillus sp. X1(2014) 0 1565991 448 1827146 537 Bacillus sp. IHB B 7164 0 1 species 0 Bacillus sp. (in: Bacteria) 1409 71 species 1 Bacillus sp. 1NLA3E 0 666686 650 species 1 0 Bacillus sp. FJAT-14266 1837130 201 species 1 0 Bacillus sp. H15-1 146 1856406 species 1 0 Bacillus sp. YP1 80 1574141 species 1 0 Bacillus sp. BH072 1570330 31 species 1 1628753 82 0 Bacillus sp. LM 4-2 1 species 105 1446792 Bacillus sp. Pc3 0 1 species species 1 Bacillus sp. WP8 0 756828 360 563169 91 0 Bacillus sp. SJ-10 1 species species 1 Bacillus sp. MD-5 0 2009331 119 1127744 103 0 Bacillus sp. JS 1 species 0 Bacillus sp. 275 1941347 84 species 1 Bacillus sp. OxB-1 0 178 98228 species 1 44 2049935 Bacillus sp. Lzh-5 0 1 species species 1 Bacillus horikoshii 0 79883 361 592 45667 0 2 genus Halobacillus mangrovi 0 295 402384 species 1 Halobacillus halophilus 0 1570 297 species 1 518 4 29331 0 Amphibacillus 1 2 genus species 1 Amphibacillus xylanus 0 1449 514 175304 1 283 0 Lentibacillus 1 2 genus 1 species 282 1472767 0 Lentibacillus amyloliquefaciens genus 1 6 0 Anoxybacillus 2430 11 150247 no rank 2 0 2639704 958 Anoxybacillus sp. B7M1 0 479 1490057 species 1 1 species 1490052 479 0 Anoxybacillus sp. B2M1 species 1 Anoxybacillus gonensis 0 388 198467 1 species 294699 472 Anoxybacillus amylolyticus 0 species 1 Anoxybacillus flavithermus 0 601 33934 genus 1 0 1906945 380 1 species 380 1426 Parageobacillus thermoglucosidasius 0 1 3 genus 2 1329200 801 Fictibacillus 0 376 1221500 0 Fictibacillus phosphorivorans 1 species species 1 0 Fictibacillus arsenicus 423 255247 0 161 351195 genus 1 1 species 161 1230341 Salimicrobium jeotgali 0 0 459532 244 genus 1 1 species 244 586416 0 Terribacillus aidingensis 1 7 genus 6 84406 3682 Virgibacillus 0 0 Virgibacillus pantothenticus 747 1473 species 1 1 species 550 1482 0 Virgibacillus halodenitrificans 0 2620237 1132 no rank 2 1 species 519 403957 0 Virgibacillus sp. SK37 1 species 613 1911587 Virgibacillus sp. 6R 0 0 Virgibacillus necropolis 667 163877 species 1 1 species 580 2017483 Virgibacillus phasianinus 0 1055323 452 0 1 genus 33936 452 0 Aeribacillus pallidus 1 species 182709 1286 0 1 genus 182710 1286 0 Oceanobacillus iheyensis 1 species 15 1 genus 2906 60 129337 Geobacillus 0 1 species 307 33940 Geobacillus thermodenitrificans 0 0 1505648 899 species group 4 1 species 1462 216 Geobacillus kaustophilus 0 species 1 0 Geobacillus lituanicus 169283 90 1 species 33938 118 0 Geobacillus thermocatenulatus 33941 475 Geobacillus thermoleovorans 0 1 species 101 129338 0 Geobacillus subterraneus 1 species species 1 0 Geobacillus genomosp. 3 91 1921421 no rank 6 0 2642459 1164 species 1 Geobacillus sp. Y4.1MC1 0 339 581103 species 1 Geobacillus sp. Y412MC52 0 550542 49 1 species 323 691437 0 Geobacillus sp. C56-T3 57 1233873 0 Geobacillus sp. GHH01 1 species 1 species 51 544556 0 Geobacillus sp. Y412MC61 1 species 345 471223 Geobacillus sp. WCH70 0 Geobacillus stearothermophilus 0 1422 284 species 1 genus 2 0 2675229 1136 1 species 1478 902 0 Bacillus simplex species 1 0 Bacillus muralis 234 264697 1191 2675230 0 2 genus Bacillus oceanisediminis 0 456 665099 species 1 1 species 735 859143 Bacillus kochii 0 5 genus 2287 2675234 0 species 1 0 Bacillus krulwichiae 653 199441 species 1 0 Bacillus halodurans 215 86665 0 Bacillus lehensis 500 300825 species 1 species 1 0 Bacillus pseudofirmus 451 79885 Bacillus clausii 0 468 79880 species 1 5 1 genus 3285 20 400634 0 Lysinibacillus 1 species 521 28031 Lysinibacillus fusiformis 0 Lysinibacillus sphaericus 0 1630 1421 species 1 1 species 538 1145276 0 Lysinibacillus varians 576 2636778 0 1 no rank Lysinibacillus sp. YS11 0 2072025 576 species 1 order 1 163 0 Lactobacillales 49327 111 186826 family 1 11 0 Carnobacteriaceae 186828 9 3205 1 2 genus 553 5 191769 0 Marinilactibacillus 1 no rank 548 2632303 0 548 1911586 Marinilactibacillus sp. 15R 0 1 species Carnobacterium 0 2747 14 2029 genus 5 1 735 257487 0 2 no rank species 1 Carnobacterium sp. CP1 0 306 1564681 1 species 208596 429 0 Carnobacterium sp. 17-4 1 species 2751 843 Carnobacterium maltaromaticum 0 1 species 437 147709 0 Carnobacterium inhibens 614 1470540 4 0 Jeotgalibaca 3 1 genus species 1 0 Jeotgalibaca dankookensis 708126 325 no rank 1 0 285 2621505 0 Jeotgalibaca sp. PTS2502 1903686 285 species 1 1 8 family 2 186827 1311 0 Aerococcaceae genus 7 1 0 Aerococcus 16 1375 1309 species 1 Aerococcus viridans 0 1377 207 species 1 Aerococcus christensenii 0 87541 273 species 1 Aerococcus urinaeequi 0 51665 266 0 Aerococcus urinaehominis 146 128944 species 1 Aerococcus urinae 0 254 1376 species 1 species 1 Aerococcus sanguinicola 0 147 119206 1 58 family 17674 39 33958 Lactobacillaceae 0 1611 1253 10 Pediococcus 0 6 1 genus species 1 0 Pediococcus pentosaceus 520 1255 species 1 0 Pediococcus damnosus 324 51663 186 1670797 0 1 species group 1254 186 0 Pediococcus acidilactici 1 species 0 Pediococcus claussenii 333 187452 species 1 238 114090 0 Pediococcus inopinatus 1 species 1 genus 2767890 311 0 1193095 311 Lactobacillus hokkaidonensis 0 1 species 109 2767876 0 1 genus 109 1603 0 Lactobacillus amylophilus 1 species 0 1144 2767842 genus 3 species 1 Lactobacillus plantarum 0 1590 847 species 1 Lactobacillus pentosus 0 1589 153 144 60520 Lactobacillus paraplantarum 0 1 species 0 252 2767892 genus 1 species 1 0 Lactobacillus paracollinoides 240427 252 genus 3 0 2767893 533 species 1 Lactobacillus parabuchneri 0 152331 134 species 1 0 Lactobacillus buchneri 160 1581 0 Lactobacillus curieae 1138822 239 species 1 2 genus 2767885 690 0 390 1599 Lactobacillus sakei 0 1 species 1 species 28038 300 Lactobacillus curvatus 0 1 genus 2767877 173 0 148814 173 Lactobacillus kunkeei 0 1 species 2 genus 2767889 548 0 1 species 375175 340 0 Lactobacillus backii 1610 208 0 Lactobacillus coryniformis 1 species 987 2742598 0 3 genus 97478 207 Lactobacillus mucosae 0 1 species 0 Lactobacillus fermentum 1613 189 species 1 species 1 Lactobacillus reuteri 0 591 1598 4 genus 2767887 1532 0 1 species 1024 1624 0 Lactobacillus salivarius 1601 163 0 Lactobacillus agilis 1 species 89059 210 0 Lactobacillus acidipiscis 1 species species 1 Lactobacillus ruminis 0 1623 135 genus 3 0 2759736 936 1597 314 Lactobacillus paracasei 0 1 species species 1 Lactobacillus rhamnosus 0 254 47715 368 1582 Lactobacillus casei 0 1 species 1 16 genus 5668 102 1578 0 Lactobacillus species 1 0 Lactobacillus jensenii 339 109790 species 1 Lactobacillus kefiranofaciens 0 307 267818 0 Lactobacillus amylolyticus 180 83683 species 1 519 1587 0 Lactobacillus helveticus 1 species 753 1596 Lactobacillus gasseri 0 1 species Lactobacillus amylovorus 0 391 1604 species 1 species 1 Lactobacillus acetotolerans 0 267 1600 0 Lactobacillus delbrueckii 1584 681 species 1 0 Lactobacillus acidophilus 1579 335 species 1 no rank 4 0 767 2620435 0 Lactobacillus sp. CBA3605 2099788 208 species 1 0 Lactobacillus sp. CBA3606 106 2099789 species 1 1 species 2108362 122 0 Lactobacillus sp. D1501 1545702 331 Lactobacillus sp. wkB8 0 1 species 52242 251 0 Lactobacillus gallinarum 1 species 0 Lactobacillus johnsonii 33959 776 species 1 2 genus 2767881 723 0 316 1625 0 Lactobacillus sanfranciscensis 1 species 407 53444 0 Lactobacillus lindneri 1 species 0 2767886 433 genus 3 1 species 77 267363 Lactobacillus zymae 0 284 1580 Lactobacillus brevis 0 1 species 637971 72 Lactobacillus koreensis 0 1 species 6 genus 1985 2767879 0 1074467 287 Lactobacillus heilongjiangensis 0 1 species 264 1612 0 Lactobacillus farciminis 1 species 1 species 332 1602 Lactobacillus alimentarius 0 1 species 392416 352 0 Lactobacillus crustorum 0 Lactobacillus allii 386 1847728 species 1 0 Lactobacillus ginsenosidimutans 1007676 364 species 1 0 Streptococcaceae 16194 19 1300 family 49 1 Streptococcus 0 132 1301 12953 genus 43 1 1348 391 0 Streptococcus parauberis 1 species 1 species 1346 317 0 Streptococcus iniae species 1 Streptococcus cristatus 0 45634 118 species 1 Streptococcus sanguinis 0 1305 155 1 species 1349 329 Streptococcus uberis 0 180 1811193 Streptococcus pantholopis 0 1 species 401 1309 0 Streptococcus mutans 1 species 1 species 315405 526 Streptococcus gallolyticus 0 species 1 0 Streptococcus suis 1307 616 3 species group 1142 671232 0 species 1 0 Streptococcus intermedius 396 1338 0 Streptococcus anginosus 545 1328 species 1 species 1 0 Streptococcus constellatus 76860 201 Streptococcus halotolerans 0 182 1814128 species 1 360 28037 0 Streptococcus mitis 1 species species 1 0 Streptococcus salivarius 581 1304 0 Streptococcus pasteurianus 231 197614 species 1 species 1 Streptococcus equinus 0 228 1335 species 1 Streptococcus thermophilus 0 1308 332 Streptococcus marmotae 0 210 1825069 species 1 species 1 Streptococcus oralis 0 357 1303 species 1 0 Streptococcus infantarius 102684 368 species 1 0 Streptococcus parasanguinis 234 1318 157 1326 0 Streptococcus acidominimus 1 species 1 species 1313 450 0 Streptococcus pneumoniae 1 species 257758 132 0 Streptococcus pseudopneumoniae 0 Streptococcus pyogenes 1314 654 species 1 1 species 147 400065 Streptococcus merionis 0 0 119603 762 species group 2 0 Streptococcus dysgalactiae 282 1334 species 1 1 species 480 1336 0 Streptococcus equi 1 species 184 82348 Streptococcus pluranimalium 0 1302 517 0 Streptococcus gordonii 1 species 59310 242 0 Streptococcus macedonicus 1 species Streptococcus lutetiensis 0 224 150055 species 1 7 no rank 2608887 1251 0 Streptococcus sp. FDAARGOS_192 0 239 1839799 species 1 Streptococcus sp. I-P16 0 134 1156433 species 1 0 Streptococcus sp. I-G2 121 1156431 species 1 Streptococcus sp. A12 0 1759399 148 species 1 1 species 712633 146 Streptococcus sp. oral taxon 431 0 1 species 324 1319 Streptococcus sp. 'group B' 0 1 species 139 1902136 Streptococcus sp. NPS 308 0 species 1 0 Streptococcus agalactiae 1311 688 1888195 155 0 Streptococcus himalayensis 1 species 10 1357 3222 0 Lactococcus 1 5 genus 175 1366 0 Lactococcus raffinolactis 1 species 0 Lactococcus piscium 1364 569 species 1 2081 1358 0 Lactococcus lactis 1 species 387 1363 Lactococcus garvieae 0 1 species 0 374 263855 no rank 1 374 1993866 0 Lactobacillales bacterium 1 species 1 18 family 6617 6 81852 Enterococcaceae 0 936 3 2737 Vagococcus 0 1 3 genus species 1 Vagococcus teuberi 0 519472 489 0 Vagococcus penaei 633807 444 species 1 650 51668 0 1 genus 1 species 650 51669 0 Tetragenococcus halophilus genus 12 1 Enterococcus 0 4400 32 1350 1 species 1352 803 Enterococcus faecium 0 species 1 Enterococcus mundtii 0 359 53346 1 species 417368 494 0 Enterococcus thailandicus Enterococcus hirae 0 1354 462 species 1 Enterococcus wangshanyuanii 0 321 2005703 species 1 species 1 0 Enterococcus durans 53345 380 no rank 3 0 2608891 630 1 species 219 2060306 0 Enterococcus sp. FDAARGOS_163 0 Enterococcus sp. FDAARGOS_375 205 2060307 species 1 2057791 206 0 Enterococcus sp. CR-Ec1 1 species species 1 Enterococcus casseliflavus 0 37734 169 Enterococcus faecalis 0 1351 750 species 1 0 625 33969 genus 1 0 Melissococcus plutonius 625 33970 species 1 Leuconostocaceae 0 3 81850 3841 family 1 17 1 genus 46254 234 0 species 1 Oenococcus oeni 0 234 1247 9 1 genus 2410 16 1243 0 Leuconostoc species 1 0 Leuconostoc citreum 33964 230 0 Leuconostoc kimchii 262 136609 species 1 0 Leuconostoc mesenteroides 1245 609 species 1 1244 517 0 Leuconostoc gelidum 1 species 255248 116 0 Leuconostoc garlicum 1 species 2685106 230 0 1 no rank 0 Leuconostoc sp. C2 979982 230 species 1 0 Leuconostoc carnosum 307 1252 species 1 species 1 0 Leuconostoc lactis 1246 123 1194 7 46255 0 Weissella 1 6 genus species 1 0 Weissella paramesenteroides 239 1249 0 Weissella ceti 164 759620 species 1 species 1 0 Weissella cibaria 137591 153 1 species 165096 260 0 Weissella koreensis 1 species 371 1631871 Weissella jogaejeotgali 0 0 33974 83 no rank 1 1930845 83 0 1 genus 0 Ndongobacter massiliensis 1871025 83 species 1 1 16 class 4310 8 1737404 Tissierellia 0 0 Tissierellales 3952 11 1737405 order 14 1 19 1570339 2890 0 Peptoniphilaceae 11 1 family 150022 607 0 1 genus Finegoldia magna 0 1260 607 species 1 859 2 165779 Anaerococcus 0 3 1 genus 1 species 33034 420 Anaerococcus prevotii 0 1870984 437 0 Anaerococcus mediterraneensis 1 species genus 1 2 Parvimonas 0 939 9 543311 0 Parvimonas micra 930 33033 species 1 genus 1 2 0 Peptoniphilus 361 4 162289 1 no rank 2637196 357 0 species 1 Peptoniphilus sp. ING2-D1G 0 1912856 357 genus 1 2 0 Murdochiella 1 1161127 105 104 1852373 0 Murdochiella vaginalis 1 species 0 1051 2042895 family 2 genus 1 2 0 Gottschalkia 3 1505664 1051 species 1 0 Gottschalkia acidurici 1556 1048 no rank 1 0 1737407 350 1 genus 1582879 350 0 Ezakiella massiliensis 0 350 1852374 species 1 0 1676648 140 class 3 order 3 0 1676649 140 1 3 family 5 1676650 140 0 Limnochordaceae 0 Limnochorda 135 3 1676651 genus 2 1 species 1 Limnochorda pilosa 0 132 1555112 0 Erysipelotrichia 1220 1 526524 class 10 1 7 526525 1219 Erysipelotrichales 0 9 1 order 1 8 family 1212 1 128827 Erysipelotrichaceae 0 Turicibacter 0 1 191303 418 genus 2 1 417 2638206 0 1 no rank 1 species 1712675 417 0 Turicibacter sp. H121 0 158 544447 no rank 1 1 species 158 1834207 Erysipelotrichaceae bacterium I46 0 1 genus 93 1729679 0 93 1702221 Faecalibaculum rodentium 0 1 species 542 1647 10 0 Erysipelothrix 3 1 genus 0 Erysipelothrix larvae 1514105 240 species 1 1 species 292 1648 0 Erysipelothrix rhusiopathiae class 1 203 Clostridia 0 100514 186801 115 Thermoanaerobacterales 0 14 68295 11647 order 1 33 2 1 family 2 227387 625 0 Thermodesulfobiaceae 1 genus 623 227388 0 Thermodesulfobium narugense 0 184064 623 species 1 543372 153 0 1 family 1 genus 252965 153 0 1 species 252966 153 Mahella australiensis 0 5508 543371 0 12 family 6 28895 1425 0 Thermoanaerobacterium 1 3 genus 1 species 1517 925 Thermoanaerobacterium thermosaccharolyticum 0 species 1 Thermoanaerobacterium xylanolyticum 0 29329 494 Caldicellulosiruptor 0 4083 44000 51 genus 9 1 0 Caldicellulosiruptor obsidiansis 413 717609 species 1 0 Caldicellulosiruptor kristjanssonii 52765 443 species 1 1 species 447 52766 0 Caldicellulosiruptor lactoaceticus 1 species 504 413888 Caldicellulosiruptor hydrothermalis 0 1 species 534 31899 0 Caldicellulosiruptor bescii Caldicellulosiruptor owensensis 0 528 55205 species 1 Caldicellulosiruptor kronotskyensis 0 413889 596 species 1 44001 567 0 Caldicellulosiruptor saccharolyticus 1 species 17 1 family 5347 25 186814 Thermoanaerobacteraceae 0 genus 9 1 0 Thermoanaerobacter 1754 208 4324 551 108150 Thermoanaerobacter italicus 0 1 species Thermoanaerobacter wiegelii 0 46354 516 species 1 1 species 532 583357 Thermoanaerobacter mathranii 0 29323 493 0 Thermoanaerobacter brockii 1 species 469 2325 Thermoanaerobacter kivui 0 1 species 1 species 496866 493 Thermoanaerobacter pseudethanolicus 0 no rank 2 0 1062 2636821 species 1 0 Thermoanaerobacter sp. X513 573062 539 399726 523 Thermoanaerobacter sp. X514 0 1 species Caldanaerobacter 0 390 249529 1 genus 2 1 911092 389 0 Caldanaerobacter subterraneus 1 species 1 genus 140458 136 0 species 1 0 Thermacetogenium phaeum 136 85874 2 1 genus 273 1 129957 Carboxydothermus 0 272 129958 Carboxydothermus hydrogenoformans 0 1 species no rank 2 0 199 42857 0 44260 118 genus 1 118 1525 Moorella thermoacetica 0 1 species 1 genus 81 42837 0 42838 81 Ammonifex degensii 0 1 species order 12 1 0 Halanaerobiales 4345 20 53433 0 Halobacteroidaceae 3 53434 1512 family 5 1 genus 2 1 0 Halobacteroides 992 3 42417 Halobacteroides halobius 0 42422 989 species 1 1 2 genus 517 28186 1 0 Acetohalobium 516 28187 Acetohalobium arabaticum 0 1 species family 6 1 0 Halanaerobiaceae 10 972 2813 441 6 32636 0 Halothermothrix 2 1 genus 31909 435 Halothermothrix orenii 0 1 species genus 3 1 0 Halanaerobium 2362 2330 13 0 Halanaerobium hydrogeniformans 656519 1035 species 1 1 species 2331 1314 Halanaerobium praevalens 0 186802 199 83367 0 Clostridiales 150 1 order 0 Oscillospiraceae 122 1 216572 family 1 3 Oscillibacter 0 459786 1 121 genus 2 1 0 Oscillibacter valericigenes 351091 120 species 1 family 25 1 Peptococcaceae 0 4797 11 186807 0 278993 200 genus 1 species 1 0 Thermincola potens 863643 200 1 5 genus 950 36853 14 0 Desulfitobacterium 196 36854 Desulfitobacterium dehalogenans 0 1 species species 1 0 Desulfitobacterium metallireducens 271 142877 1 species 251 233055 0 Desulfitobacterium dichloroeliminans Desulfitobacterium hafniense 0 49338 218 species 1 genus 1 0 172 51196 1 species 172 51197 Syntrophobotulus glycolicus 0 genus 1 2 Candidatus Desulforudis 0 155 471826 6 species 1 0 Candidatus Desulforudis audaxviator 471827 149 0 1150 79206 genus 3 1 species 343 79209 Desulfosporosinus meridiei 0 species 1 Desulfosporosinus acidiphilus 0 885581 383 1 species 1563 424 Desulfosporosinus orientis 0 1 4 genus 454 8 56112 0 Dehalobacter species 1 Dehalobacter restrictus 0 153 55583 0 2635733 293 no rank 2 1 species 1131462 147 Dehalobacter sp. CF 0 species 1 Dehalobacter sp. DCA 0 146 1147129 0 261 2282740 genus 1 species 1 0 Desulfotomaculum gibsoniae 102134 261 0 319 2282742 genus 1 1 species 58138 319 Desulfotomaculum acetoxidans 0 1 5 genus 1562 4 817 Desulfotomaculum 0 1 species 187 1833852 Desulfotomaculum ferrireducens 0 1 species 312 59610 0 Desulfotomaculum reducens species 1 0 Desulfotomaculum ruminis 1564 153 0 Desulfotomaculum nigrificans 161 1565 species 1 genus 1 0 51514 308 308 51515 Dehalobacterium formicoaceticum 0 1 species 3073 2304686 0 10 family genus 3 0 2304692 1454 Herbivorax saccincola 0 555 1677857 species 1 species 1 0 Ruminiclostridium thermocellum 345 1515 288965 554 [Clostridium] clariflavum 0 1 species 236752 422 0 1 genus 1 species 236753 422 0 Fastidiosipila sanguinis 0 Ruminiclostridium 10 1508657 460 genus 2 1 0 [Clostridium] cellulolyticum 450 1521 species 1 genus 1 0 2304691 186 1510 186 0 [Clostridium] stercorarium 1 species 0 2305130 96 no rank 1 0 Ruminiclostridium sp. KB18 96 1834198 species 1 0 1637257 155 genus 1 884684 155 0 Mageeibacillus indolicus 1 species 1 genus 2304693 300 0 species 1 [Clostridium] thermosuccinogenes 0 300 84032 1 11 family 5997 14 186804 0 Peptostreptococcaceae 0 1411023 518 no rank 1 1 species 518 2081703 0 Peptostreptococcaceae bacterium oral taxon 929 1 genus 1425 1849828 0 1 species 1505 1425 Paeniclostridium sordellii 0 Acetoanaerobium 0 4 186831 769 genus 2 1 species 1 0 Acetoanaerobium sticklandii 1511 765 1 2 genus 2 1870884 2801 Clostridioides 0 1496 2799 Clostridioides difficile 0 1 species genus 2 1 0 Filifactor 1 44259 315 314 143361 0 Filifactor alocis 1 species 3 1481960 155 0 Peptoclostridium 1 2 genus species 1 0 Peptoclostridium acidaminophilum 1731 152 family 2 1 Heliobacteriaceae 0 31984 1 120 2697 119 0 1 genus 1 species 35701 119 0 Heliobacterium modesticaldum 25 1 family 7071 186803 14 Lachnospiraceae 0 genus 1 2 Herbinix 0 373 2 1663717 Herbinix luporum 0 371 1679721 species 1 1 3 genus 1124 3 830 0 Butyrivibrio 572 43305 0 Butyrivibrio proteoclasticus 1 species species 1 0 Butyrivibrio hungatei 549 185008 genus 1 2 0 Cellulosilyticum 2 698776 1086 0 Cellulosilyticum lentocellum 29360 1084 species 1 genus 1 0 2039240 327 327 28446 0 Anaerotignum propionicum 1 species 0 841 145 genus 1 145 301301 Roseburia hominis 0 1 species genus 1 0 28050 588 1 species 588 39485 [Eubacterium] eligens 0 0 207 2719231 genus 1 1 species 207 84030 [Clostridium] saccharolyticum 0 genus 3 1 Blautia 0 541 6 572511 181 2648079 0 1 no rank species 1 0 Blautia sp. YL58 181 1796616 1322 354 0 Blautia hansenii 1 species genus 1 0 181 2719313 1 species 208479 181 [Clostridium] bolteae 0 1009 1506553 12 0 Lachnoclostridium 4 1 genus species 1 Lachnoclostridium phytofermentans 0 706 66219 0 193 2608895 no rank 1 0 Lachnoclostridium sp. YL32 193 1834196 species 1 1 species 98 1871021 0 Lachnoclostridium phocaeense genus 1 0 715 2569097 species 1 [Eubacterium] hallii 0 39488 715 398 1 207244 0 Anaerostipes 1 2 genus species 1 0 Anaerostipes hadrus 649756 397 2 no rank 363 186928 0 species 1 0 Lachnospiraceae bacterium oral taxon 500 712991 127 236 39491 0 [Eubacterium] rectale 1 species 11 1 family 44 541000 1113 Ruminococcaceae 0 1 genus 196 216851 0 1 species 853 196 Faecalibacterium prausnitzii 0 Flavonifractor 0 164 3 946234 genus 2 1 161 292800 0 Flavonifractor plautii 1 species 1890281 1 Herbivorax 0 1 genus 80 2305133 0 1 no rank 0 Ruminococcaceae bacterium CPB6 80 1572656 species 1 0 Ruminococcus 1263 1 330 genus 1 3 175 1264 0 Ruminococcus albus 1 species species 1 Ruminococcus bicirculans 0 1160721 154 no rank 1 0 552397 181 species 1 [Clostridium] cellulosi 0 181 29343 0 117 253238 genus 1 species 1 0 Ethanoligenens harbinense 117 253239 190 543349 0 2 family 1 2 genus 2 2733 190 Symbiobacterium 0 1 species 2734 188 Symbiobacterium thermophilum 0 6 186806 984 0 Eubacteriaceae 1 5 family 2 1 genus 515 11 1730 Eubacterium 0 504 1736 0 Eubacterium limosum 1 species 463 1 33951 0 Acetobacterium 1 2 genus 462 33952 Acetobacterium woodii 0 1 species 2 family 990719 127 0 127 1 990721 Christensenella 0 1 2 genus 0 Christensenella massiliensis 1805714 126 species 1 no rank 9 0 538999 919 1 2 genus 1392389 1 110 Intestinimonas 0 species 1 0 Intestinimonas butyriciproducens 109 1297617 0 Clostridiales Family XIII. Incertae Sedis 543314 3 457 family 1 4 genus 2 1 Mogibacterium 0 86331 2 238 114527 236 Mogibacterium diversum 0 1 species species 1 0 [Eubacterium] sulci 216 143393 genus 1 0 2717089 222 species 1 Mordavella sp. Marseille-P3756 0 222 2086584 2 1 family 130 2 539000 Clostridiales Family XVII. Incertae Sedis 0 1 genus 73918 128 0 1 species 73919 128 0 Thermaerobacter marianensis family 1 40 0 Clostridiaceae 58318 72 31979 49082 46 2112 Candidatus Arthromitus 0 1 4 genus 2638829 2066 0 3 no rank 1 species 49118 610 Candidatus Arthromitus sp. SFB-mouse 0 632 1508644 0 Candidatus Arthromitus sp. SFB-mouse-NL 1 species 1 species 824 1041504 0 Candidatus Arthromitus sp. SFB-rat-Yit 0 Clostridium 1485 317 54328 genus 30 1 1 species 1258 1494 Clostridium cochlearium 0 species 1 Clostridium baratii 0 2413 1561 species 1 0 Clostridium chauvoei 46867 1259 36745 2325 Clostridium saccharoperbutylacetonicum 0 1 species 1 species 915 1519 Clostridium tyrobutyricum 0 1491 12649 Clostridium botulinum 0 1 species Clostridium estertheticum 0 1272 238834 species 1 0 2614128 527 no rank 2 Clostridium sp. SY8519 0 73 1042156 species 1 0 Clostridium sp. BNL1100 454 755731 species 1 1 species 1548 1591 0 Clostridium scatologenes species 1 0 Clostridium taeniosporum 1658 394958 0 Clostridium tetani 1513 1662 species 1 1897 169679 Clostridium saccharobutylicum 0 1 species 1520 2816 0 Clostridium beijerinckii 1 species Clostridium novyi 0 1155 1542 species 1 species 1 0 Clostridium pasteurianum 1501 2455 0 Clostridium cellulovorans 1264 1493 species 1 species 1 Clostridium kluyveri 0 1534 1561 780 1497 0 Clostridium formicaceticum 1 species 29341 1357 0 Clostridium argentinense 1 species 0 Clostridium ljungdahlii 1154 1538 species 1 1 species 767 84022 0 Clostridium aceticum 1 species 1104 84023 0 Clostridium autoethanogenum 1163 1488 0 Clostridium acetobutylicum 1 species 217159 1653 0 Clostridium carboxidivorans 1 species species 1 0 Clostridium sporogenes 1303 1509 1 species 2234 1492 Clostridium butyricum 0 1 species 2416 1502 0 Clostridium perfringens species 1 0 Clostridium bornimense 1216932 1403 0 390805 567 genus 1 Geosporobacter ferrireducens 0 1424294 567 species 1 1981033 1 Mordavella 0 1 genus 1 3 genus 114627 5 1238 0 Alkaliphilus species 1 0 Alkaliphilus oremlandii 461 461876 species 1 Alkaliphilus metalliredigens 0 208226 772 68298 337 0 4 family 91 2 129001 0 Syntrophothermus 1 2 genus species 1 Syntrophothermus lipocalidus 0 86170 89 2 862 246 0 Syntrophomonas 2 1 genus 1 species 244 863 Syntrophomonas wolfei 0 2770089 473 0 3 order 2770093 107 0 2 family Thermosediminibacter 0 291988 1 107 genus 2 1 species 1 Thermosediminibacter oceani 0 106 291990 family 1 0 2770092 366 0 499228 366 genus 1 1 species 499229 366 0 Tepidanaerobacter acetatoxydans 9 485256 567 Natranaerobiales 0 4 1 order family 1 3 Natranaerobiaceae 0 4 485255 558 1 2 genus 554 375928 5 0 Natranaerobius species 1 Natranaerobius thermophilus 0 549 375929 no rank 1 0 684 84086 0 endosymbiont 'TC1' of Trimyema compressum 243899 684 species 1 28 1 class 9 909932 4176 Negativicutes 0 1 14 order 2577 13 909929 0 Selenomonadales family 4 1 0 Sporomusaceae 1468 5 1843490 Pelosinus 0 3 365348 1463 genus 3 1 no rank 1 0 714 2629460 484770 714 Pelosinus sp. UFO1 0 1 species 0 Pelosinus fermentans 746 365349 species 1 9 1 family 1096 10 1843491 Selenomonadaceae 0 1 6 genus 533 16 970 0 Selenomonas 3 no rank 2637378 263 0 1 species 713030 105 0 Selenomonas sp. oral taxon 136 Selenomonas sp. oral taxon 920 0 68 1884263 species 1 Selenomonas sp. oral taxon 478 0 90 712538 species 1 species 1 Selenomonas ruminantium 0 124 971 0 Selenomonas sputigena 69823 130 species 1 0 Megamonas 553 158846 2 genus 2 1 0 Megamonas hypermegale 158847 551 species 1 0 1843488 245 order 4 family 4 1 Acidaminococcaceae 0 909930 2 245 Acidaminococcus 0 243 3 904 genus 1 3 0 Acidaminococcus fermentans 905 117 species 1 187327 123 Acidaminococcus intestini 0 1 species Veillonellales 0 1345 1843489 4 order 1 9 0 Veillonellaceae 1341 7 31977 family 8 1 genus 1 3 Veillonella 0 605 29465 3 species 1 0 Veillonella parvula 460 29466 Veillonella rodentium 0 248315 142 species 1 1 906 209 0 Megasphaera 2 1 genus 1 species 208 907 Megasphaera elsdenii 0 genus 1 0 909928 130 species 1 0 Negativicoccus massiliensis 130 1702287 390 39948 0 1 genus 39950 390 0 Dialister pneumosintes 1 species 67819 217 0 3 phylum 4 1663419 217 0 Fimbriimonadia 1 3 class order 2 1 0 Fimbriimonadales 213 1663425 4 209 1663426 0 1 family 209 1005038 0 1 genus 1 species 1005039 209 Fimbriimonas ginsengisoli 0 871358 1798711 0 158 clade Cyanobacteria 0 871358 1117 30 phylum 158 1 2 1890505 796 Chroococcidiopsidales 0 4 1 order 1 3 family 794 13 1890528 Chroococcidiopsidaceae 0 1 2 genus 1 54298 781 0 Chroococcidiopsis species 1 Chroococcidiopsis thermalis 0 54299 780 1 no rank 1983111 556 0 0 cyanobacterium endosymbiont of Epithemia turgida 718217 556 species 1 58 1 order 136 1890424 825445 Synechococcales 0 family 1 5 0 Merismopediaceae 1281 1 1890428 genus 1 4 0 Synechocystis 1280 50 1142 no rank 3 0 1230 2640012 species 1 0 Synechocystis sp. PCC 6714 1147 476 species 1 0 Synechocystis sp. PCC 6803 377 1148 Synechocystis sp. IPPAS B-1465 0 377 2116702 species 1 1 3 family 1890429 23 603 0 Acaryochloridaceae 1 2 genus 155977 8 580 Acaryochloris 0 species 1 0 Acaryochloris marina 572 155978 5 1 family 119036 1213 11 0 Prochloraceae 4 1 genus 119025 38 1218 Prochlorococcus 0 1219 114711 Prochlorococcus marinus 0 1 species 2 no rank 2627481 4276 0 2493 1501268 Prochlorococcus sp. MIT 0604 0 1 species 1 species 1783 1501269 Prochlorococcus sp. MIT 0801 0 Leptolyngbyaceae 0 21 1890438 1776 family 1 6 0 Leptolyngbya 1755 33 47251 genus 5 1 3 no rank 2650499 1328 0 1 species 1752064 407 Leptolyngbya sp. NIES-3755 0 Leptolyngbya sp. PCC 7376 0 635 111781 species 1 species 1 Leptolyngbya sp. O-77 0 1080068 286 1 species 394 1184 0 Leptolyngbya boryana 0 2303730 412 family 2 genus 1 2 Halomicronema 0 2 170610 412 1 species 410 1209493 0 Halomicronema hongdechloris 33 1 family 63 1890426 701406 0 Synechococcaceae genus 2 1 0 Thermosynechococcus 146785 1 245 species 1 Thermosynechococcus elongatus 0 146786 244 Synechococcus 0 697592 1575 1129 genus 26 1 0 Synechococcus elongatus 363 32046 species 1 0 695399 2626047 no rank 23 species 1 0 Synechococcus sp. KORDI-52 7290 585425 Synechococcus sp. PCC 73109 0 182 374982 species 1 species 1 Synechococcus sp. UTEX 2973 0 1350461 367 species 1 0 Synechococcus sp. WH 7803 3296 32051 species 1 0 Synechococcus sp. NIES-970 289 1827144 Synechococcus sp. CC9311 0 64471 43174 species 1 1 species 32049 166 Synechococcus sp. PCC 7002 0 species 1 Synechococcus sp. WH 8103 0 29410 5459 1 species 321327 224 0 Synechococcus sp. JA-3-3Ab 0 Synechococcus sp. PCC 7117 167 195498 species 1 Synechococcus sp. PCC 8807 0 173 195248 species 1 0 Synechococcus sp. PCC 7502 568 1173263 species 1 1 species 374981 291 0 Synechococcus sp. PCC 7003 species 1 Synechococcus sp. RCC307 0 316278 2242 species 1 Synechococcus sp. SynAce01 0 1326 1916956 4403 585423 Synechococcus sp. KORDI-49 0 1 species 1 species 264 321332 0 Synechococcus sp. JA-2-3B'a(2-13) 1 species 3323 1280380 Synechococcus sp. KORDI-100 0 species 1 0 Synechococcus sp. WH 8109 166314 8235 Synechococcus sp. CC9605 0 7267 110662 species 1 84588 5211 Synechococcus sp. WH 8102 0 1 species 316279 601155 Synechococcus sp. CC9902 0 1 species 327 195253 Synechococcus sp. PCC 6312 0 1 species 255 33070 Synechococcus lividus 0 1 species 1 genus 13034 553 0 Dactylococcopsis salina 0 292566 553 species 1 Cyanobium 0 10 167375 2953 genus 1 3 1 species 59930 1242 0 Cyanobium gracile no rank 1 0 1701 2627006 species 1 0 Cyanobium sp. NIES-981 1701 1851505 795 11 1890436 0 Pseudanabaenaceae 1 3 family 0 Pseudanabaena 5 1152 784 genus 2 1 1 no rank 2593292 779 0 82654 779 Pseudanabaena sp. PCC 7367 0 1 species 6 1 class 3 307596 664 Gloeobacteria 0 661 6 307595 0 Gloeobacterales 1 5 order Gloeobacteraceae 0 1890422 14 655 family 4 1 1 3 genus 641 6 33071 Gloeobacter 0 266 1416614 0 Gloeobacter kilaueensis 1 species 1 species 369 33072 0 Gloeobacter violaceus 3346 52604 11 0 Pleurocapsales 1 8 order 403 33 1890500 Hyellaceae 0 3 1 family 0 Pleurocapsa 44474 6 370 genus 1 2 1 species 54308 364 Pleurocapsa minor 0 family 1 4 0 Dermocarpellaceae 2932 27 1890498 102115 26 2905 0 Stanieria 1 3 genus 1775 2642663 0 1 no rank species 1 Stanieria sp. NIES-3757 0 1807358 1775 1 species 102116 1104 0 Stanieria cyanosphaera Nostocales 0 20908 82 1161 order 34 1 3 1 family 1048 1892263 1 0 Hapalosiphonaceae 1047 1 1190 Fischerella 0 1 2 genus 1 no rank 1046 494603 0 1 species 1046 1752063 0 Fischerella sp. NIES-3754 1 18 family 11521 36 1162 Nostocaceae 0 2534 1163 27 Anabaena 0 4 1 genus 1663 2619674 0 2 no rank 844 46234 0 Anabaena sp. 90 1 species 0 Anabaena sp. WA102 819 1647413 species 1 Anabaena cylindrica 0 1165 844 species 1 genus 3 1 Trichormus 0 9 264688 1411 species 1 Trichormus variabilis 0 622 264691 1 species 1164 780 0 Trichormus azollae 10 1 genus 7540 1177 73 0 Nostoc 1306274 835 Nostoc flagelliforme 0 1 species 5844 2593658 0 7 no rank 317936 1136 0 Nostoc sp. PCC 7107 1 species species 1 0 Nostoc sp. NIES-3756 1751286 715 1618022 694 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1 species species 1 0 Nostoc sp. PCC 7120 607 103690 1 species 1869241 746 Nostoc sp. CENA543 0 1261031 763 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 species 1 species 28072 1183 0 Nostoc sp. PCC 7524 0 Nostoc punctiforme 788 272131 species 1 1 3 family 20 1185 1319 Rivulariaceae 0 1 2 genus 1299 373984 4 0 Rivularia 1295 2676603 0 1 no rank species 1 0 Rivularia sp. PCC 7116 373994 1295 8 family 2661849 6274 0 0 Calothrix 1186 43 6274 genus 1 8 0 5484 2619626 no rank 6 99598 872 0 Calothrix sp. PCC 7507 1 species species 1 Calothrix sp. NIES-4071 0 2005469 1202 0 Calothrix sp. NIES-3974 2005462 508 species 1 0 Calothrix sp. 336/3 641 1337936 species 1 0 Calothrix sp. NIES-4101 978 2005461 species 1 1283 1954171 Calothrix sp. NIES-2098 0 1 species 747 32054 Calothrix parietina 0 1 species no rank 1 0 1219117 664 Nostocales cyanobacterium HT-58-2 0 1940762 664 species 1 subclass 46 0 1301283 19613 1 21 order 6300 83 1150 0 Oscillatoriales 3 1 family 3 1892255 700 Gomontiellaceae 0 genus 1 2 Crinalium 0 241421 3 697 1 species 241425 694 Crinalium epipsammum 0 0 Oscillatoriaceae 2840 1892254 47 family 1 6 Moorea 0 1442 1155738 10 genus 2 1 Moorea producens 0 1432 1155739 species 1 1351 1158 4 Oscillatoria 0 1 3 genus 0 Oscillatoria nigro-viridis 734 482564 species 1 118323 613 Oscillatoria acuminata 0 1 species 45 1892249 403 Cyanothecaceae 0 1 3 family genus 2 1 0 Cyanothece 43988 39 358 319 2649277 0 1 no rank 0 Cyanothece sp. PCC 7425 395961 319 species 1 1 3 family 23 1892251 350 0 Coleofasciculaceae 327 2 63132 Geitlerinema 0 1 2 genus 1 no rank 2648775 325 0 0 Geitlerinema sp. PCC 7407 1173025 325 species 1 24 1892252 1924 Microcoleaceae 0 5 1 family Trichodesmium 0 1401 4 1205 genus 2 1 1 species 1397 1206 Trichodesmium erythraeum 0 499 3 44471 0 Microcoleus 1 2 genus no rank 1 0 496 2642155 1 species 1173027 496 0 Microcoleus sp. PCC 7113 13313 37 1118 0 Chroococcales 1 25 order 0 Microcystaceae 2525 14 1890449 family 4 1 genus 1 3 0 Microcystis 1125 11 2511 species 1 0 Microcystis aeruginosa 1701 1126 0 799 2643300 no rank 1 799 1967666 0 Microcystis sp. MC19 1 species 4843 52 1890464 0 Chroococcaceae 7 1 family genus 3 1 Geminocystis 0 2459 9 669357 2450 2625037 0 2 no rank 1 species 1149 1617448 0 Geminocystis sp. NIES-3709 0 Geminocystis sp. NIES-3708 1301 1615909 species 1 genus 1 0 102231 722 0 722 2623012 no rank 1 species 1 Gloeocapsa sp. PCC 7428 0 1173026 722 0 Chondrocystis 3 268175 1610 genus 2 1 2648896 1607 0 1 no rank Chondrocystis sp. NIES-4102 0 1607 2005460 species 1 1 10 family 24 1890450 4980 Aphanothecaceae 0 genus 2 0 28070 1809 0 2546356 775 species 1 0 Cyanothece sp. PCC 7424 65393 775 strain 1 1 species 1034 2546359 0 strain 1 0 Cyanothece sp. PCC 7822 1034 497965 0 Candidatus Atelocyanobacterium 1 1453359 838 genus 1 2 0 Candidatus Atelocyanobacterium thalassa 837 713887 species 1 no rank 2 0 92682 507 0 Halothece 507 76023 4 genus 2 1 0 503 2632878 no rank 1 Halothece sp. PCC 7418 0 65093 503 species 1 genus 2 0 2546365 1071 species 2 0 2546366 1071 41431 541 0 Cyanothece sp. PCC 8801 1 strain 0 Cyanothece sp. PCC 8802 530 395962 strain 1 0 731 263510 genus 1 species 1 0 2546360 731 strain 1 0 Cyanothece sp. ATCC 51142 731 43989 0 Cyanobacteriaceae 6 1890452 928 family 1 3 0 Cyanobacterium 922 102234 7 genus 2 1 379064 915 0 Cyanobacterium aponinum 1 species 35 phylum 4406 1297 0 13 188787 4406 0 Deinococci 1 35 class order 3 0 309 2762275 1 3 family 332247 3 309 Trueperaceae 0 3 332248 306 0 Truepera 1 2 genus Truepera radiovictrix 0 332249 303 species 1 order 15 1 0 Deinococcales 2087 32 118964 2055 8 183710 0 Deinococcaceae 1 14 family 13 1 genus 36 1298 2047 Deinococcus 0 1 species 157 432329 0 Deinococcus peraridilitoris no rank 1 0 2623546 144 0 Deinococcus sp. NW-56 144 2080419 species 1 1 species 1309411 201 0 Deinococcus soli Cha et al. 2016 species 1 0 Deinococcus proteolyticus 269 55148 0 Deinococcus swuensis 177 1182571 species 1 Deinococcus gobiensis 0 502394 214 species 1 1 species 116 310783 0 Deinococcus deserti species 1 0 Deinococcus radiodurans 1299 139 1 species 309887 227 0 Deinococcus maricopensis species 1 Deinococcus actinosclerus 0 1768108 149 species 1 Deinococcus geothermalis 0 132 68909 86 1182568 0 Deinococcus puniceus 1 species order 16 1 Thermales 0 17 68933 1997 family 1 15 Thermaceae 0 188786 12 1980 3 1 genus 3 65551 379 0 Meiothermus 277 226 0 Meiothermus ruber 1 species 150 52022 Meiothermus silvanus 0 1 species 170 1 186191 Marinithermus 0 1 2 genus 0 Marinithermus hydrothermalis 186192 169 species 1 genus 1 0 211 208447 Oceanithermus profundus 0 211 187137 species 1 8 1 genus 270 23 1208 Thermus 0 species 1 Thermus aquaticus 0 271 194 1 species 150 56957 0 Thermus oshimai 1 species 274 361 Thermus thermophilus 0 1 species 56956 130 0 Thermus brockianus 1 no rank 109 2619321 0 species 1 0 Thermus sp. CCB_US3_UF1 109 1111069 1 species 456163 136 Thermus parvatiensis 0 0 Thermus scotoductus 105 37636 species 1 0 1930617 353 phylum 3 1 1962850 353 Calditrichae 0 3 1 class 0 1962852 352 order 2 family 2 0 352 1962854 0 Caldithrix 187144 4 352 genus 2 1 species 1 Caldithrix abyssi 0 187145 348 0 2138240 220 phylum 3 220 1 2138243 0 Coprothermobacteria 1 3 class order 1 2 0 Coprothermobacterales 3 2138246 219 216 2138247 0 1 family 0 216 68335 genus 1 species 1 Coprothermobacter proteolyticus 0 35786 216 phylum 14 0 2030 40117 Nitrospira 0 6 203693 2030 class 1 14 Nitrospirales 0 29 189778 2024 order 1 13 Nitrospiraceae 0 1995 3 189779 family 12 1 988 2 28261 0 Thermodesulfovibrio 2 1 genus 28262 986 Thermodesulfovibrio yellowstonii 0 1 species 179 6 507 0 Leptospirillum 4 1 genus species group 1 0 261385 166 1660083 166 0 Leptospirillum sp. Group II 'CF-1' 1 species 1 species group 146 261386 0 1 species 178606 146 0 Leptospirillum ferriphilum species group 1 0 189 655606 180 189 0 Leptospirillum ferrooxidans 1 species Nitrospira 0 1234 4 497 genus 1 5 species 1 0 Candidatus Nitrospira inopinata 90 1715989 115 1325564 Nitrospira japonica 0 1 species 330214 117 Nitrospira defluvii 0 1 species species 1 0 Nitrospira moscoviensis 42253 171 2323 640 0 3 no rank 0 1783234 640 clade 3 568 95901 0 2 clade 2 class 2497643 568 0 2497644 568 0 2 order 2497645 568 0 2 family genus 1 2 Candidatus Babela 0 568 5 1551504 0 Candidatus Babela massiliensis 673862 563 species 1 1 phylum 72 95818 0 0 72 1895827 no rank 1 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 72 2056494 species 1 0 1 0 name