members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 23590920 4799 46332 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 2157 0 superkingdom 81170 280 34 1 clade 0 1783276 34 1 1801631 0 phylum 0 genus 2490204 34 1 Candidatus Micrarchaeota archaeon Mia14 1 34 0 species 1920749 1783275 0 clade 49 6832 phylum 0 651137 10 2069 no rank 0 651142 712 3 1825023 0 genus 2 402 species 0 1603555 Candidatus Nitrosotenuis cloacae 158 1 Candidatus Nitrosotenuis sp. AQ6f 244 1 species 0 1846278 1593364 genus 0 310 1 Candidatus Nitrosopelagicus brevis 310 1 species 0 1410606 31932 0 order 802 3 802 3 family 0 338190 1 189 1993653 0 genus Candidatus Nitrosomarinus catalina 189 1 species 0 1898749 2 613 0 genus 338191 Candidatus Nitrosopumilus adriaticus 326 1 0 species 1580092 species 0 1229909 Candidatus Nitrosopumilus sediminis 287 1 4 555 0 class 1643678 order 0 1033996 2 465 465 2 1033997 family 0 genus 0 497726 9 Nitrososphaera 1 465 2 Nitrososphaera viennensis 1 456 species 0 1034015 order 0 1968909 1 Candidatus Nitrosocaldales 1 2 90 89 1 1968910 family 0 genus 0 498374 89 1 Candidatus Nitrosocaldus islandicus 89 1 species 0 2045011 1 65 phylum 0 51967 1 65 498845 0 genus 0 species 498846 Candidatus Korarchaeum cryptofilum 65 1 phylum 0 28889 38 4698 4698 38 class 0 183924 order 0 114380 6 Desulfurococcales 1 1243 14 2307 0 family 4 607 0 genus 2308 Pyrodictium 1 2 495 1 1273541 0 species 1 494 Pyrodictium delaneyi 0 genus 54247 1 36 36 1 Hyperthermus butylicus 54248 0 species genus 0 54251 76 1 species 0 54252 Pyrolobus fumarii 76 1 9 630 1 Desulfurococcaceae 3 2272 0 family 0 genus 477695 1 51 1200300 species 0 1 51 Thermogladius calderae 2 149 2279 0 genus 0 species 2280 Staphylothermus marinus 77 1 84599 species 0 1 72 Staphylothermus hellenicus 2273 genus 0 2 112 Desulfurococcus amylolyticus 55 1 species 0 94694 2275 0 species 57 1 Desulfurococcus mucosus 54258 0 genus 2 157 54259 species 0 17 1 Ignicoccus islandicus 1 140 Ignicoccus hospitalis 160233 0 species 0 genus 54253 158 1 species 0 54254 Thermosphaera aggregans 1 158 871006 0 order 3 308 1 Acidilobales 4 0 family 255472 1 198 198 1 genus 0 200414 0 species 200415 Caldisphaera lagunensis 1 198 871007 family 0 1 106 106 1 genus 0 105850 1 106 Acidilobus saccharovorans 242703 species 0 0 order 2281 9 1903 family 0 118883 4 Sulfolobaceae 1 9 1903 2100760 genus 0 1 168 species 0 2287 Sulfolobus solfataricus 1 168 0 genus 69655 1 317 species 0 111955 Sulfolobus tokodaii 1 317 3 1026 2284 genus 0 2641160 0 no rank 394 1 1891280 0 species 1 394 Sulfolobus sp. A20 species 0 43080 Sulfolobus islandicus 1 464 168 1 Sulfolobus acidocaldarius 2285 species 0 41980 genus 0 193 2 1 98 Metallosphaera cuprina 1006005 0 species 0 species 43687 Metallosphaera sedula 95 1 195 1 genus 0 12914 563177 species 0 1 195 Acidianus hospitalis order 0 2266 6 Thermoproteales 1 12 1244 0 family 2267 6 599 genus 0 164450 236 2 164451 species 0 1 100 Vulcanisaeta distributa Vulcanisaeta moutnovskia 136 1 species 0 985052 74 1 0 genus 2276 2277 species 0 1 74 Pyrobaculum islandicum genus 0 2270 242 2 184117 species 0 173 1 Thermoproteus uzoniensis Thermoproteus tenax 69 1 species 0 2271 76886 0 genus 47 1 0 species 76887 Caldivirga maquilingensis 47 1 family 0 114378 2 Thermofilaceae 1 639 5 0 genus 2268 4 637 1483572 species 0 1 224 Thermofilum carboxyditrophus 1550241 species 0 1 113 Thermofilum uzonense 1 208 Thermofilum adornatus 1365176 0 species Thermofilum pendens 92 1 0 species 2269 1 230 74304 6 Euryarchaeota 28890 phylum 0 183980 0 class 12 1668 1 Archaeoglobi 4 0 order 2231 Archaeoglobales 1 11 1664 1 2232 0 family 10 1663 1 2 118 1 Ferroglobus 54260 genus 0 0 species 54261 Ferroglobus placidus 117 1 190818 0 genus 564 3 1 Geoglobus 2 species 0 113653 Geoglobus ahangari 1 345 0 species 565033 Geoglobus acetivorans 217 1 1 981 5 1 Archaeoglobus 2233 genus 0 1316941 species 0 1 182 Archaeoglobus sulfaticallidus 1 230 Archaeoglobus fulgidus 2234 0 species 84156 species 0 1 85 Archaeoglobus profundus 1 483 Archaeoglobus veneficus 58290 species 0 5385 20 0 clade 2283796 1803510 clade 0 343 2 343 2 genus 0 379546 379547 species 0 251 1 Aciduliprofundum boonei 92 1 2633939 no rank 0 Aciduliprofundum sp. MAR08-339 92 1 0 species 673860 18 5042 1 Thermoplasmata 16 183967 0 class no rank 0 1234666 897 1 1 897 methanogenic archaeon ISO4-H5 1495144 0 species 0 order 2301 Thermoplasmatales 2 10 2774 1 no rank 0 1919231 1127 1 0 species 1054217 Thermoplasmatales archaeon BRNA1 1127 1 198 1 46630 0 family 1 198 46631 0 genus 0 species 82076 Picrophilus torridus 1 198 2 208 1747776 family 0 genus 0 1747777 3 Cuniculiplasma 1 208 2 1 205 Cuniculiplasma divulgatum 1673428 species 0 1 Thermoplasmataceae 1 321 3 family 0 46659 genus 0 2302 2 320 50339 species 0 176 1 Thermoplasma volcanium 144 1 Thermoplasma acidophilum 2303 species 0 2 918 family 0 90142 2 918 0 genus 74968 0 species 97393 Ferroplasma acidarmanus 1 482 0 species 74969 Ferroplasma acidiphilum 1 436 1235850 order 0 1 1355 6 1 Methanomassiliicoccales 2517203 0 family 2 686 genus 0 1291539 14 Candidatus Methanomethylophilus 1 686 2 0 species 1291540 Candidatus Methanomethylophilus alvus 1 672 1 3 668 3 Methanomassiliicoccaceae 1577788 family 0 0 genus 1607807 297 1 1 297 Candidatus Methanoplasma termitum 1577791 0 species genus 0 1080709 1 368 1 368 Candidatus Methanomassiliicoccus intestinalis 1406512 0 species 43161 115 clade 0 2290931 1 19966 50 49 Methanomicrobia 224756 class 0 1 1113 5 11 Methanocellales 570264 order 0 0 family 570265 Methanocellaceae 2 1102 4 1 1100 3 1 Methanocella 1 570266 0 genus Methanocella conradii 1 399 species 0 1175444 1 700 Methanocella arvoryzae 1175445 0 species order 0 2191 38 Methanomicrobiales 1 4330 16 0 family 2194 5 2068 genus 0 45989 28 Methanoculleus 1 4 1731 712 1 Methanoculleus bourgensis 83986 0 species species 0 2198 Methanoculleus marisnigri 1 655 no rank 0 2619537 336 1 Methanoculleus sp. MAB1 336 1 0 species 86622 337 1 0 genus 230355 Methanolacinia petrolearia 1 337 species 0 54120 1198451 family 0 1 1199 6 5 Methanoregulaceae 0 genus 395331 Methanoregula 10 3 869 1 Methanoregula boonei 280 1 0 species 358766 species 0 882104 Methanoregula formicica 1 579 Methanosphaerula 1 325 2 1 0 genus 475087 0 species 475088 Methanosphaerula palustris 1 324 88404 family 0 1 653 3 1 Methanocorpusculaceae 652 2 1 Methanocorpusculum 3 2192 0 genus species 0 83984 Methanocorpusculum labreanum 649 1 372 1 family 0 196137 2202 genus 0 1 372 species 0 2203 Methanospirillum hungatei 372 1 25 Methanosarcinales 1 28 14474 order 0 94695 0 family 143067 Methanosaetaceae 10 4 1038 1 2222 genus 0 1 1028 3 1 Methanothrix species 0 301375 Methanosaeta harundinacea 683 1 0 species 2223 Methanothrix soehngenii 1 344 1 13411 23 21 Methanosarcinaceae 2206 family 0 0 genus 2225 Methanococcoides 1 771 3 1 2226 species 0 367 1 Methanococcoides methylutens Methanococcoides burtonii 403 1 species 0 29291 genus 0 2220 1 890 Methanolobus psychrophilus 890 1 species 0 420950 0 genus 2321 1 285 0 species 2322 Methanohalobium evestigatum 285 1 101191 0 genus 490 1 101192 species 0 1 490 Methanomethylovorans hollandica 2175 0 genus 907 2 2176 0 species 1 625 Methanohalophilus mahii 282 1 Methanohalophilus halophilus 2177 species 0 genus 0 196136 464 1 Methanosalsum zhilinae 464 1 species 0 39669 2207 genus 0 1 9583 13 18 Methanosarcina 418008 species 0 1 730 Methanosarcina horonobensis species 0 2210 Methanosarcina thermophila 824 1 Methanosarcina mazei 1 1222 species 0 2209 1 494 Methanosarcina lacustris 170861 0 species 490 1 Methanosarcina vacuolata 2215 species 0 0 species 2214 Methanosarcina acetivorans 1 658 Methanosarcina siciliae 739 1 0 species 38027 1 2177 Methanosarcina barkeri 2208 species 0 4 2231 0 no rank 2644672 Methanosarcina sp. MTP4 485 1 species 0 1434100 1 802 Methanosarcina sp. Kolksee 1434099 species 0 1 416 Methanosarcina sp. WH1 1434102 0 species 528 1 Methanosarcina sp. WWM596 1434103 species 0 Halobacteria 157 23195 65 1 0 class 183963 1644055 0 order 6530 18 1 Haloferacales 65 Haloferacaceae 17 8 3235 1 0 family 1644056 60846 0 genus 2 348 1 Halogeometricum 3 60847 0 species 1 345 Halogeometricum borinquense 191 1 293431 0 genus species 0 293091 Haloquadratum walsbyi 191 1 0 genus 2251 Haloferax 23 4 2679 1 Haloferax volcanii 1036 1 0 species 2246 1 531 Haloferax mediterranei 2252 species 0 1 1089 Haloferax gibbonsii 35746 species 0 1963271 0 family 2693 8 1 Halorubraceae 10 1644057 genus 0 1 2 694 10 Salinigranum 1 684 Salinigranum rubrum 755307 species 0 0 genus 56688 Halorubrum 39 1449 3 1 Halorubrum trapanicum 1 827 species 0 29284 Halorubrum lacusprofundi 583 1 0 species 2247 1209988 genus 0 1 2 540 14 Halopenitus species 0 1048396 Halopenitus persicus 1 526 537 1 2678336 no rank 0 756883 species 0 537 1 halophilic archaeon DL31 2235 0 order 28 9646 1 Halobacteriales 120 3482 11 1 Halobacteriaceae 11 2236 0 family 332246 0 genus 774 2 1 Halalkalicoccus 6 768 1 Halalkalicoccus jeotgali 413810 0 species Halobacterium 11 1923 4 1 0 genus 2239 Halobacterium salinarum 1 487 0 species 2242 Halobacterium hubeiense 714 1 0 species 1407499 no rank 0 2668073 711 1 751944 species 0 711 1 Halobacterium sp. DL1 0 genus 1656823 Halanaeroarchaeum 3 233 2 1 species 0 1604004 Halanaeroarchaeum sulfurireducens 230 1 2 541 1 Halodesulfurarchaeum 1 1980514 0 genus 540 1 Halodesulfurarchaeum formicicum 1873524 0 species family 0 1963268 52 Haloarculaceae 1 6044 16 Natronomonas 2 3 697 1 0 genus 63743 Natronomonas pharaonis 407 1 species 0 2257 0 species 416273 Natronomonas moolapensis 288 1 2751 5 1 Haloarcula 110 2237 0 genus species 0 1932004 Haloarcula taiwanensis 1 552 2624677 no rank 0 1 672 Haloarcula sp. CBA1115 672 1 species 0 1592728 1 657 Haloarcula marismortui 2238 0 species 0 species 51589 Haloarcula hispanica 1 760 2 851 1 Halomicrobium 3 203135 0 genus species 0 57705 Halomicrobium mukohataei 1 848 2 664 1 Halorientalis 18 1073987 0 genus 1 646 no rank 0 2648975 species 0 1932360 Halorientalis sp. IM1011 1 646 Halorhabdus 30 3 1029 1 0 genus 146825 569 1 Halorhabdus utahensis 146826 0 species 430914 0 species 1 430 Halorhabdus tiamatea Natrialbales 85 18 6862 1 0 order 1644060 1 17 6777 75 Natrialbaceae 1644061 family 0 Halopiger 1 2 905 1 0 genus 387342 species 0 387343 Halopiger xanaduensis 904 1 1383 3 1 Haloterrigena 34 121871 0 genus Haloterrigena daqingensis 539 1 0 species 588898 Haloterrigena turkmenica 1 810 species 0 62320 717 1 203193 genus 0 229731 species 0 1 717 Halobiforma lacisalsi 0 genus 29287 Natronococcus 1 2 867 1 29288 species 0 866 1 Natronococcus occultus 0 genus 63742 543 1 1 543 Natrialba magadii 13769 species 0 353799 genus 0 1 603 353800 species 0 1 603 Halostagnicola larsenii 3 914 1 Natrinema 7 88723 0 genus 1 499 Natrinema pellirubrum 69525 0 species 408 1 2622230 0 no rank 0 species 406552 Natrinema sp. J7-2 1 408 244 1 2256 genus 0 0 species 44930 Natronobacterium gregoryi 244 1 Salinarchaeum 1 526 2 1 0 genus 1269201 525 1 no rank 0 2621923 1 525 Salinarchaeum sp. Harcht-Bsk1 1333523 species 0 40 8482 1 Thermococci 13 183968 0 class Thermococcales 23 8469 39 1 0 order 2258 8446 38 1 Thermococcaceae 17 2259 0 family genus 0 2260 1282 7 2629106 no rank 0 2 376 0 species 1183377 Pyrococcus sp. ST04 214 1 342949 species 0 162 1 Pyrococcus sp. NA2 Pyrococcus furiosus 1 445 species 0 2261 species 0 53953 Pyrococcus horikoshii 1 122 Pyrococcus yayanosii 1 152 species 0 1008460 Pyrococcus abyssi 1 66 species 0 29292 0 species 1609559 Pyrococcus kukulkanii 1 121 54 Thermococcus 1 7009 29 genus 0 2263 248 1 Thermococcus barossii 54077 0 species 0 species 277988 Thermococcus thioreducens 207 1 187878 species 0 246 1 Thermococcus gammatolerans 163003 species 0 262 1 Thermococcus cleftensis Thermococcus siculi 1 220 species 0 72803 Thermococcus barophilus 1 352 species 0 55802 185 1 Thermococcus nautili 195522 0 species 110164 0 species 183 1 Thermococcus guaymasensis Thermococcus peptonophilus 246 1 0 species 53952 137 1 Thermococcus onnurineus 342948 species 0 Thermococcus radiotolerans 400 1 0 species 187880 Thermococcus litoralis 454 1 0 species 2265 178 1 Thermococcus pacificus 71998 0 species no rank 0 2627626 1630 6 species 0 1674923 Thermococcus sp. 2319x1 1 184 1042877 species 0 217 1 Thermococcus sp. 4557 1 73 Thermococcus sp. P6 122420 0 species 293 1 Thermococcus sp. EXT12c 2016361 0 species 538 1 Thermococcus sp. AM4 246969 species 0 species 0 2008440 Thermococcus sp. 5-4 325 1 2264 0 species 1 323 Thermococcus celer 167 1 Thermococcus gorgonarius 71997 0 species Thermococcus eurythermalis 171 1 species 0 1505907 582419 species 0 226 1 Thermococcus paralvinellae species 0 172049 Thermococcus sibiricus 1 386 0 species 54262 Thermococcus chitonophagus 1 92 0 species 311400 Thermococcus kodakarensis 196 1 1 261 Thermococcus profundus 49899 0 species Thermococcus piezophilus 1 185 species 0 1712654 genus 0 83867 1 138 Palaeococcus pacificus 138 1 0 species 971279 15602 42 0 clade 2283794 9226 26 1 Methanobacteria 1 183925 0 class 2158 order 0 1 9225 25 2 Methanobacteriales 4 Methanobacteriaceae 1 22 8703 family 0 2159 403 5 1 Methanothermobacter 3 145260 0 genus species 0 145261 Methanothermobacter wolfeii 1 64 1 106 Methanothermobacter thermautotrophicus 145262 0 species Methanothermobacter marburgensis 117 1 0 species 145263 113 1 no rank 0 2631116 Methanothermobacter sp. CaT2 1 113 0 species 866790 403 1 2316 genus 0 2317 species 0 1 403 Methanosphaera stadtmanae 2172 0 genus 5802 7 1 Methanobrevibacter 4 2638681 0 no rank 1528 2 1609968 species 0 1 889 Methanobrevibacter sp. YE315 species 0 224719 Methanobrevibacter sp. AbM4 639 1 1 1160 Methanobrevibacter olleyae 294671 species 0 Methanobrevibacter smithii 1 1292 0 species 2173 83816 species 0 1 804 Methanobrevibacter ruminantium 230361 species 0 1 1014 Methanobrevibacter millerae 2160 genus 0 1 8 2091 7 Methanobacterium 2162 species 0 367 1 Methanobacterium formicicum 118062 species 0 1 217 Methanobacterium congolense 2627676 0 no rank 409 2 Methanobacterium sp. MZ-A1 226 1 species 0 1911685 1379702 0 species 1 183 Methanobacterium sp. MB1 59277 species 0 186 1 Methanobacterium subterraneum 0 species 877455 Methanobacterium lacus 1 391 Methanobacterium paludis 1 514 species 0 868131 520 2 2178 family 0 Methanothermus 4 520 2 1 0 genus 2179 516 1 Methanothermus fervidus 2180 species 0 1 16 6376 13 Methanococci 183939 class 0 13 Methanococcales 1 15 6363 order 0 2182 2183 family 0 1 3992 6 1 Methanococcaceae genus 0 2184 3666 4 2187 species 0 359 1 Methanococcus vannielii 1 501 Methanococcus voltae 2188 species 0 42879 0 species 1 536 Methanococcus aeolicus 1 2270 Methanococcus maripaludis 39152 0 species 155862 genus 0 1 325 0 species 155863 Methanothermococcus okinawensis 1 325 196117 0 family 8 2358 0 genus 196118 Methanocaldococcus 1 7 2091 1 Methanocaldococcus bathoardescens 411 1 0 species 1301915 species 0 67760 Methanocaldococcus infernus 139 1 0 no rank 2641196 253 1 1 253 Methanocaldococcus sp. FS406-22 644281 0 species 0 species 73913 Methanocaldococcus vulcanius 254 1 2190 0 species 520 1 Methanocaldococcus jannaschii 1 513 Methanocaldococcus fervens 83171 species 0 196119 genus 0 267 1 0 species 2189 Methanotorris igneus 1 267 superkingdom 0 2 151 Bacteria 1 23463418 4487 95 59103 clade 0 1783257 phylum 0 204428 22 3755 class 0 204429 6 Chlamydiia 1 3755 22 1529 7 0 order 1963360 1 369 family 0 92714 1 369 genus 0 71666 Waddlia chondrophila 1 369 species 0 71667 1 971 4 1 Parachlamydiaceae 92713 family 0 1 591 83551 genus 0 83552 0 species 591 1 Parachlamydia acanthamoebae 0 genus 282132 Candidatus Protochlamydia 1 379 2 1 Candidatus Protochlamydia naegleriophila 1 378 0 species 389348 92712 family 0 1 189 2 4 Simkaniaceae genus 0 34093 185 1 Simkania negevensis 185 1 species 0 83561 Chlamydiales 2 14 2220 1 0 order 51291 0 family 809 Chlamydiaceae 2 2218 13 1 2216 12 1113537 no rank 0 810 0 genus 2216 12 1 Chlamydia 137 187 1 Chlamydia pneumoniae 83558 species 0 169 1 Chlamydia abortus 83555 0 species 1 270 Chlamydia trachomatis 813 0 species Chlamydia avium 152 1 species 0 1457141 83559 species 0 212 1 Chlamydia suis 162 1 Chlamydia felis 83556 0 species 0 species 1457153 Chlamydia gallinacea 209 1 83557 species 0 1 114 Chlamydia caviae Chlamydia pecorum 310 1 0 species 85991 Chlamydia muridarum 143 1 species 0 83560 0 species 83554 Chlamydia psittaci 1 151 phylum 0 134625 1613 5 1 5 1613 14 Kiritimatiellae 1921781 class 0 1 4 1599 8 Kiritimatiellales 1921782 order 0 1921783 0 family 1591 3 1 Kiritimatiellaceae 7 0 genus 1921784 Kiritimatiella 21 2 1584 1 0 species 1307763 Kiritimatiella glycovorans 1563 1 0 phylum 256845 3 8458 Lentisphaeria 41 8458 3 1 0 class 1313211 278082 order 0 1 2 8417 930 Victivallales 7487 1 1674876 no rank 0 0 species 2094242 Victivallales bacterium CCUG 44730 7487 1 21970 26 1 Verrucomicrobia 24 74201 0 phylum class 0 1955630 615 3 3 615 0 order 717963 717964 family 0 3 615 genus 0 511745 2 Methylacidiphilum 1 3 615 species 0 511746 Methylacidiphilum infernorum 1 418 Methylacidiphilum fumariolicum 195 1 0 species 591154 6 8949 1 Verrucomicrobiae 18 203494 0 class 48461 0 order 8931 5 1 Verrucomicrobiales 39 family 0 1647988 58 Akkermansiaceae 1 4 8892 116 Akkermansia 1 3 8834 genus 0 239934 1679444 0 species 2433 1 Akkermansia glycaniphila 239935 0 species 1 6285 Akkermansia muciniphila 2 294 0 class 134549 134550 genus 0 1 294 2 1 Candidatus Xiphinematobacter 2648876 0 no rank 293 1 Candidatus Xiphinematobacter sp. Idaho Grape 1 293 0 species 1704307 109 Opitutae 1 9142 12 class 0 414999 0 order 415000 Opitutales 192 7 8192 1 Opitutaceae 88 6 8000 1 0 family 134623 0 genus 1961799 Lacunisphaera 52 2 2575 1 1 2523 Lacunisphaera limnophila 1838286 0 species 3290 1 278955 no rank 0 794903 0 species 1 3290 Opitutaceae bacterium TAV5 Opitutus 18 2047 2 1 0 genus 178440 2029 1 Opitutus terrae 107709 species 0 841 4 1 Puniceicoccales 7 415001 0 order 1 834 3 1 Puniceicoccaceae 415002 family 0 833 2 1 Coraliomargarita 2 442430 0 genus 831 1 Coraliomargarita akajimensis 395922 species 0 2946 2 0 no rank 417295 species 0 2026799 Verrucomicrobia bacterium 1591 1 1637999 species 0 1355 1 Verrucomicrobia bacterium IMCC26134 2 Planctomycetes 1 23307 39 phylum 0 203682 0 class 203683 Planctomycetia 56 17894 27 1 1255 3 0 order 2691355 Gemmataceae 4 3 1255 1 0 family 1914233 Gemmata 4 2 1251 1 0 genus 113 1 1247 2622970 no rank 0 1630693 0 species 1247 1 Gemmata sp. SH-PL17 112 0 order 10 9749 1 Planctomycetales 243 0 family 126 Planctomycetaceae 48 9 9506 1 Planctomyces 32 5842 3 1 0 genus 118 5810 2 2648843 0 no rank species 0 1636152 Planctomyces sp. SH-PL62 1 4284 1632864 species 0 1526 1 Planctomyces sp. SH-PL14 0 genus 1936111 Fuerstia 5 1920 2 1 Fuerstia marisgermanicae 1 1915 0 species 1891926 Planctopirus 1 939 2 1 0 genus 1649480 0 species 120 Planctopirus limnophila 938 1 1 757 0 genus 1649490 species 0 119 Rubinisphaera brasiliensis 1 757 7 4902 order 0 2691356 family 0 1763524 57 Isosphaeraceae 1 4902 7 genus 0 466152 2 Singulisphaera 1 2 1278 1 1276 Singulisphaera acidiphila 466153 0 species 0 genus 1763521 Paludisphaera 4 2 2552 1 Paludisphaera borealis 2548 1 0 species 1387353 127 genus 0 1 2 1015 4 Isosphaera 128 0 species 1011 1 Isosphaera pallida 0 order 2691354 1932 6 2691357 family 0 4 1210 265488 genus 0 1 2 626 3 Rhodopirellula 0 species 265606 Rhodopirellula baltica 623 1 1 Pirellula 1 2 584 genus 0 123 0 species 125 Pirellula staleyi 1 583 2 722 0 family 2691358 genus 0 1676125 2 Thermogutta 1 722 2 1 720 Thermogutta terrifontis 1331910 species 0 class 0 2517206 4 751 751 4 1 Candidatus Brocadiales 16 1127829 0 order family 0 1127830 2 Candidatus Brocadiaceae 1 735 3 1 2 733 7 Candidatus Kuenenia 380738 genus 0 0 species 174633 Candidatus Kuenenia stuttgartiensis 1 726 0 class 666505 Phycisphaerae 23 4660 7 1 0 order 666506 Phycisphaerales 57 4 2152 1 0 family 666507 Phycisphaeraceae 20 3 2095 1 0 genus 666508 Phycisphaera 48 2075 2 1 0 species 547188 Phycisphaera mikurensis 2027 1 order 0 2483366 2 2485 0 family 2483367 2 2485 2485 2 0 genus 2483368 0 species 1940790 Phycisphaerae bacterium L21-RPul-D3 1277 1 Phycisphaerae bacterium ST-PulAB-D4 1 1208 species 0 1941349 phylum 0 508458 8168 11 34 Synergistia 1 8168 11 class 0 649775 0 order 649776 Synergistales 71 8134 10 1 1 9 8063 233 Synergistaceae 649777 family 0 0 genus 336260 1 418 Thermovirga lienii 418 1 species 0 336261 1 4738 2 27 Cloacibacillus 508459 genus 0 Cloacibacillus porcorum 4711 1 species 0 1197717 genus 0 49894 2 Acetomicrobium 1 2 477 97477 species 0 1 475 Acetomicrobium mobile 0 genus 81466 1118 1 1 1118 Aminobacterium colombiense 81468 0 species 1 2 1079 34 Thermanaerovibrio 81461 genus 0 1 1045 Thermanaerovibrio acidaminovorans 81462 species 0 1 1324 2138240 0 phylum 2138243 class 0 1 1324 1 1324 order 0 2138246 2138247 family 0 1324 1 68335 genus 0 1324 1 species 0 35786 Coprothermobacter proteolyticus 1324 1 0 phylum 200930 5210 10 68337 0 class 10 5210 1 Deferribacteres 28 Deferribacterales 67 9 5182 1 0 order 191393 8 5115 1 Deferribacteraceae 87 191394 0 family 0 genus 117999 Denitrovibrio 5 1744 2 1 Denitrovibrio acetiphilus 1 1739 0 species 118000 1 840 545865 genus 0 Calditerrivibrio nitroreducens 840 1 0 species 477976 1 2 1177 1 Flexistipes 2351 genus 0 1176 1 Flexistipes sinusarabici 2352 species 0 1 1267 2 4 Deferribacter 53572 genus 0 Deferribacter desulfuricans 1263 1 0 species 197162 Elusimicrobia 3 4850 11 1 0 phylum 74152 class 0 641853 787 3 order 0 641854 1 Elusimicrobiales 1 3 787 family 0 641876 1 Elusimicrobiaceae 1 786 2 785 1 423604 genus 0 Elusimicrobium minutum 785 1 species 0 423605 2688 6 1 Endomicrobia 3 447830 0 class 1783344 0 order 2685 5 1 Endomicrobiales 8 0 family 1783343 Endomicrobiaceae 17 2677 4 1 genus 0 1408194 3 Endomicrobium 1 3 2660 1328 1 Endomicrobium proavitum 1408281 species 0 Candidatus Endomicrobium trichonymphae 1 1329 species 0 1408204 0 no rank 99260 1 1372 species 0 167965 uncultured Termite group 1 bacterium 1372 1 11799173 1736 1783272 0 clade 86222 152 1798711 0 clade 35 Cyanobacteria 1 152 86222 phylum 0 1117 1890424 0 order 37598 56 1 Synechococcales 284 2303730 0 family 2 626 11 Halomicronema 1 626 2 genus 0 170610 0 species 1209493 Halomicronema hongdechloris 615 1 1890426 family 0 1 33 25074 138 Synechococcaceae 0 genus 146785 1 452 146786 species 0 452 1 Thermosynechococcus elongatus 167375 0 genus 5157 3 1 Cyanobium 43 species 0 59930 Cyanobium gracile 1 2645 1 2469 0 no rank 2627006 species 0 1851505 Cyanobium sp. NIES-981 1 2469 Dactylococcopsis 7 640 2 1 0 genus 13034 292566 0 species 633 1 Dactylococcopsis salina 1129 genus 0 1 26 18687 289 Synechococcus 33070 0 species 1 506 Synechococcus lividus 0 no rank 2626047 17092 23 2111 1 Synechococcus sp. JA-3-3Ab 321327 species 0 29410 species 0 1028 1 Synechococcus sp. WH 8103 321332 0 species 1 1251 Synechococcus sp. JA-2-3B'a(2-13) 1173263 species 0 1 436 Synechococcus sp. PCC 7502 species 0 195253 Synechococcus sp. PCC 6312 292 1 species 0 166314 Synechococcus sp. WH 8109 699 1 Synechococcus sp. KORDI-52 1 983 species 0 585425 Synechococcus sp. NIES-970 1 419 0 species 1827144 1350461 species 0 1 825 Synechococcus sp. UTEX 2973 374981 species 0 1 538 Synechococcus sp. PCC 7003 species 0 1916956 Synechococcus sp. SynAce01 1 910 64471 species 0 1 273 Synechococcus sp. CC9311 Synechococcus sp. PCC 7002 1 347 0 species 32049 Synechococcus sp. CC9902 257 1 species 0 316279 110662 species 0 1 866 Synechococcus sp. CC9605 0 species 195248 Synechococcus sp. PCC 8807 402 1 Synechococcus sp. RCC307 1 976 species 0 316278 310 1 Synechococcus sp. PCC 7117 195498 0 species 1 831 Synechococcus sp. KORDI-100 1280380 0 species 0 species 84588 Synechococcus sp. WH 8102 1 1080 1 570 Synechococcus sp. PCC 73109 374982 0 species 585423 species 0 1010 1 Synechococcus sp. KORDI-49 678 1 Synechococcus sp. WH 7803 32051 0 species species 0 32046 Synechococcus elongatus 1 800 1 4593 5 1 Prochloraceae 1213 family 0 1 4 4592 9 Prochlorococcus 1218 genus 0 1219 0 species 3456 1 Prochlorococcus marinus 1127 2 2627481 0 no rank Prochlorococcus sp. MIT 0801 703 1 0 species 1501269 species 0 1501268 Prochlorococcus sp. MIT 0604 1 424 Merismopediaceae 2 1532 5 1 0 family 1890428 1142 0 genus 1530 4 1 Synechocystis 33 1497 3 2640012 0 no rank Synechocystis sp. PCC 6714 813 1 0 species 1147 Synechocystis sp. PCC 6803 1 342 species 0 1148 2116702 species 0 342 1 Synechocystis sp. IPPAS B-1465 1 4281 6 64 Leptolyngbyaceae 1890438 family 0 0 genus 47251 Leptolyngbya 12 4217 5 1 3 3549 2650499 no rank 0 species 0 1752064 Leptolyngbya sp. NIES-3755 867 1 1080068 species 0 1515 1 Leptolyngbya sp. O-77 species 0 111781 Leptolyngbya sp. PCC 7376 1167 1 1 656 Leptolyngbya boryana 1184 0 species 775 2 family 0 1890429 0 genus 155977 Acaryochloris 1 2 775 1 species 0 155978 Acaryochloris marina 1 774 2 433 0 family 1890436 Pseudanabaena 5 433 2 1 0 genus 1152 428 1 no rank 0 2593292 0 species 82654 Pseudanabaena sp. PCC 7367 428 1 35 Gloeobacteria 1 3647 6 class 0 307596 307595 order 0 1 3612 5 50 Gloeobacterales 1890422 0 family 4 3562 1 Gloeobacteraceae 37 0 genus 33071 Gloeobacter 26 3 3525 1 0 species 1416614 Gloeobacter kilaueensis 1 1305 Gloeobacter violaceus 2194 1 species 0 33072 33 Nostocales 1 21733 34 order 0 1161 0 family 2661849 5716 8 1186 genus 0 1 8 5716 92 Calothrix 905 1 Calothrix parietina 32054 species 0 no rank 0 2619626 4719 6 Calothrix sp. NIES-4071 1938 1 species 0 2005469 species 0 2005461 Calothrix sp. NIES-4101 1 794 species 0 2005462 Calothrix sp. NIES-3974 486 1 Calothrix sp. PCC 7507 1 441 species 0 99598 species 0 1954171 Calothrix sp. NIES-2098 1 551 Calothrix sp. 336/3 509 1 0 species 1337936 1219117 0 no rank 549 1 Nostocales cyanobacterium HT-58-2 1 549 species 0 1940762 family 0 1892263 2 Hapalosiphonaceae 1 502 3 0 genus 1190 Fischerella 8 500 2 1 0 no rank 494603 1 492 0 species 1752063 Fischerella sp. NIES-3754 492 1 13349 18 1 Nostocaceae 62 1162 0 family 1177 0 genus 10 8487 1 Nostoc 138 0 no rank 2593658 5853 7 0 species 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 726 1751286 0 species 1 1509 Nostoc sp. NIES-3756 0 species 1869241 Nostoc sp. CENA543 743 1 1 637 Nostoc sp. PCC 7107 317936 species 0 0 species 103690 Nostoc sp. PCC 7120 782 1 610 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 0 species 28072 species 0 846 1 Nostoc sp. PCC 7524 1 1171 Nostoc punctiforme 272131 0 species 1306274 0 species 1 1325 Nostoc flagelliforme genus 0 1163 21 Anabaena 1 4 3225 2619674 no rank 0 2338 2 46234 species 0 1 933 Anabaena sp. 90 1405 1 Anabaena sp. WA102 1647413 0 species Anabaena cylindrica 1 866 0 species 1165 1575 3 1 Trichormus 3 264688 0 genus Trichormus azollae 509 1 0 species 1164 0 species 264691 Trichormus variabilis 1063 1 1 3 1584 12 Rivulariaceae 1185 family 0 2 Rivularia 1 2 1572 genus 0 373984 1570 1 2676603 0 no rank 1570 1 Rivularia sp. PCC 7116 373994 species 0 1890505 order 0 742 3 1 742 3 7 Chroococcidiopsidaceae 1890528 family 0 genus 0 54298 4 Chroococcidiopsis 1 735 2 1 731 Chroococcidiopsis thermalis 54299 0 species 1983111 no rank 0 323 1 1 323 cyanobacterium endosymbiont of Epithemia turgida 718217 species 0 1301283 0 subclass 43 20098 1118 order 0 1 12036 23 10 Chroococcales 1890464 0 family 7 3512 1 Chroococcaceae 23 3 2300 1 Geminocystis 4 669357 0 genus 2 2296 no rank 0 2625037 1386 1 Geminocystis sp. NIES-3708 1615909 0 species 1 910 Geminocystis sp. NIES-3709 1617448 species 0 2 610 1 Gloeocapsa 7 102231 0 genus 1 603 no rank 0 2623012 1173026 0 species 1 603 Gloeocapsa sp. PCC 7428 0 genus 268175 579 1 2648896 no rank 0 1 579 species 0 2005460 Chondrocystis sp. NIES-4102 579 1 Aphanothecaceae 4 9 4913 1 0 family 1890450 746 1 263510 genus 0 746 1 0 species 2546360 0 strain 43989 Cyanothece sp. ATCC 51142 1 746 1820 2 28070 genus 0 species 0 2546356 1 818 818 1 Cyanothece sp. PCC 7424 65393 strain 0 0 species 2546359 1002 1 Cyanothece sp. PCC 7822 1 1002 0 strain 497965 2 1371 genus 0 2546365 2546366 species 0 2 1371 Cyanothece sp. PCC 8802 1 719 strain 0 395962 41431 strain 0 1 652 Cyanothece sp. PCC 8801 2 588 0 no rank 92682 genus 0 76023 31 Halothece 1 2 588 557 1 no rank 0 2632878 65093 0 species 557 1 Halothece sp. PCC 7418 1453359 genus 0 1 384 0 species 713887 Candidatus Atelocyanobacterium thalassa 1 384 1 2 1104 6 Cyanobacteriaceae 1890452 family 0 1 1098 102234 0 genus 0 species 379064 Cyanobacterium aponinum 1098 1 4 2497 1 Microcystaceae 6 1890449 0 family 1 2491 3 40 Microcystis 1125 genus 0 2643300 no rank 0 1 712 1967666 species 0 712 1 Microcystis sp. MC19 1 1739 Microcystis aeruginosa 1126 species 0 Oscillatoriales 65 8062 20 1 0 order 1150 1892252 0 family 4 2173 1 Microcoleaceae 4 2 1282 1 Trichodesmium 3 1205 0 genus 1206 0 species 1 1279 Trichodesmium erythraeum 44471 genus 0 887 1 2642155 no rank 0 887 1 Microcoleus sp. PCC 7113 1 887 0 species 1173027 1 3 1811 3 Coleofasciculaceae 1892251 family 0 1808 2 1 Geitlerinema 6 63132 0 genus 0 no rank 2648775 1 1802 1 1802 Geitlerinema sp. PCC 7407 1173025 species 0 1 6 2585 15 Oscillatoriaceae 1892254 family 0 1550 3 1 Oscillatoria 5 1158 0 genus 0 species 118323 Oscillatoria acuminata 1 685 482564 0 species 860 1 Oscillatoria nigro-viridis 2 Moorea 1 2 1020 genus 0 1155738 0 species 1155739 Moorea producens 1018 1 1892249 family 0 1 660 3 13 Cyanothecaceae 66 Cyanothece 1 647 2 genus 0 43988 2649277 no rank 0 581 1 0 species 395961 Cyanothece sp. PCC 7425 581 1 Gomontiellaceae 34 768 3 1 0 family 1892255 8 Crinalium 1 734 2 genus 0 241421 1 726 Crinalium epipsammum 241425 0 species 10 Pleurocapsales 1 2046 8 order 0 52604 1 3 522 2 Hyellaceae 1890500 family 0 44474 genus 0 1 520 2 3 Pleurocapsa 517 1 Pleurocapsa minor 54308 species 0 Dermocarpellaceae 13 1514 4 1 0 family 1890498 genus 0 102115 32 Stanieria 1 1501 3 no rank 0 2642663 648 1 Stanieria sp. NIES-3757 1 648 0 species 1807358 1 821 Stanieria cyanosphaera 102116 species 0 187 Actinobacteria 1 1138772 661 phylum 0 201174 146254 33 1 Coriobacteriia 758 84998 0 class Eggerthellales 704 18 97290 1 0 order 1643822 1643826 family 0 1 17 96586 13560 Eggerthellaceae 0 genus 447020 Adlercreutzia 12 2 14479 1 1 14467 Adlercreutzia equolifaciens 446660 0 species 84108 genus 0 1 2 8314 40 Slackia 8274 1 Slackia heliotrinireducens 84110 species 0 genus 0 79603 11 Denitrobacterium 1 3856 2 species 0 79604 Denitrobacterium detoxificans 1 3845 1 7411 2 9 Phoenicibacter 1981050 genus 0 7402 1 Phoenicibacter massiliensis 1944646 0 species Cryptobacterium 3 2 1184 1 0 genus 84162 84163 species 0 1181 1 Cryptobacterium curtum 25197 3 1 Eggerthella 180 84111 0 genus species 0 84112 Eggerthella lenta 1 19692 0 no rank 2648737 5325 1 502558 species 0 1 5325 Eggerthella sp. YY7918 644652 genus 0 1 22585 3 142 Gordonibacter Gordonibacter urolithinfaciens 1 12074 species 0 1335613 1 10369 Gordonibacter massiliensis 1841863 0 species 84999 order 0 1 48206 14 494 Coriobacteriales 1 6 21715 1319 Coriobacteriaceae 84107 family 0 83 Collinsella 1 2 12552 genus 0 102106 0 species 74426 Collinsella aerofaciens 12469 1 5199 1 0 no rank 84113 1 5199 Coriobacteriaceae bacterium 68-1-3 1531429 0 species 1 2645 2 12 Coriobacterium 33870 genus 0 0 species 33871 Coriobacterium glomerans 2633 1 Atopobiaceae 412 7 25997 1 0 family 1643824 5 1 Atopobium 1380 genus 0 genus 0 133925 188 Olsenella 1 23277 4 1805478 0 species 11842 1 Olsenella sp. Marseille-P2300 133926 0 species 6608 1 Olsenella uli 1 4639 0 no rank 2638792 species 0 712411 Olsenella sp. oral taxon 807 4639 1 2767353 0 genus 2303 1 1382 0 species 2303 1 Atopobium parvulum 2141 7 1 Acidimicrobiia 6 84992 0 class order 0 84993 68 Acidimicrobiales 1 2135 6 2 1641 2448023 family 0 23 Ilumatobacter 1 2 1641 genus 0 682522 Ilumatobacter coccineus 1 1618 0 species 467094 3 426 1 Acidimicrobiaceae 20 84994 0 family 1 406 2 6 Acidimicrobium 53634 genus 0 400 1 Acidimicrobium ferrooxidans 53635 0 species 5 3360 1 Thermoleophilia 19 1497346 0 class 1 3341 4 122 Solirubrobacterales 588673 order 0 0 family 320583 Conexibacteraceae 24 3219 3 1 191494 genus 0 1 2 3195 48 Conexibacter 191495 0 species 3147 1 Conexibacter woesei Rubrobacteria 69 3475 6 1 0 class 84995 40 Rubrobacterales 1 5 3406 order 0 84996 1 4 3366 15 Rubrobacteraceae 84997 family 0 genus 0 42255 81 Rubrobacter 1 3 3351 2228 1 Rubrobacter xylanophilus 49319 0 species species 0 42256 Rubrobacter radiotolerans 1042 1 1760 class 0 1 605 981521 7828 Actinobacteria 0 order 1643684 Nakamurellales 7 2187 4 1 Nakamurellaceae 48 2180 3 1 0 family 85031 0 genus 53460 Nakamurella 16 2132 2 1 0 species 53461 Nakamurella multipartita 2116 1 Frankiales 29 7 9159 1 0 order 85013 family 0 74712 211 Frankiaceae 1 6 9130 81 Frankia 1 5 8919 genus 0 1854 0 species 106370 Frankia casuarinae 1 1337 no rank 0 2632575 2431 1 298653 species 0 2431 1 Frankia sp. EAN1pec Frankia inefficax 1 2567 species 0 298654 species 0 1859 Frankia alni 1 2503 1643818 no rank 0 2 1423 0 genus 147067 Thermobispora 53 1423 2 1 1 1370 Thermobispora bispora 2006 0 species Candidatus Nanopelagicales 16 4755 12 1 0 order 2039638 11 4739 2162846 family 0 4 1193 1 Candidatus Nanopelagicus 26 2039639 0 genus 0 species 1884915 Candidatus Nanopelagicus hibericus 1 512 0 species 1884634 Candidatus Nanopelagicus limnes 258 1 1884916 0 species 1 397 Candidatus Nanopelagicus abundans 622681 genus 0 1 3546 7 29 Candidatus Planktophila 573600 species 0 1 448 Candidatus Planktophila limnetica 593 1 Candidatus Planktophila vernalis 1884907 0 species 1 510 Candidatus Planktophila sulfonica 1884904 0 species Candidatus Planktophila lacus 582 1 0 species 1884913 714 1 Candidatus Planktophila dulcis 1884914 0 species 0 species 1884905 Candidatus Planktophila versatilis 1 670 Micromonosporales 58 36155 20 1 0 order 85008 28056 family 0 1 19 36097 656 Micromonosporaceae 1873 genus 0 1 8392 4 289 Micromonospora Micromonospora aurantiaca 2867 1 species 0 47850 0 no rank 2617518 1 2922 648999 0 species 1 2922 Micromonospora sp. L5 1003110 0 species 1 2314 Verrucosispora maris 125 Plantactinospora 1 4 7452 genus 0 673534 3 7327 2631981 0 no rank 2891 1 Plantactinospora sp. KBS50 2024580 0 species 2108470 species 0 2152 1 Plantactinospora sp. BC1 Plantactinospora sp. BB1 2284 1 species 0 2071627 Verrucosispora 1 10 genus 0 84593 1 3960 3 15 Salinispora 168694 genus 0 Salinispora tropica 1 1460 0 species 168695 species 0 168697 Salinispora arenicola 1 2485 0 genus 1865 Actinoplanes 337 6 15627 1 Actinoplanes friuliensis 2805 1 0 species 196914 2769 1 Actinoplanes missouriensis 1866 0 species no rank 0 2626549 3 9716 Actinoplanes sp. SE50 3093 1 0 species 2033844 1 3531 Actinoplanes sp. N902-109 649831 species 0 3092 1 Actinoplanes sp. SE50/110 134676 species 0 2037 0 order 20 26566 1 Actinomycetales 45 2049 0 family 26521 19 1 Actinomycetaceae 4518 genus 0 28263 4 Arcanobacterium 1 595 2 Arcanobacterium haemolyticum 591 1 species 0 28264 1654 genus 0 1 9 13457 439 Actinomyces 111015 0 species 2503 1 Actinomyces radicidentis Actinomyces oris 1953 1 species 0 544580 2609248 no rank 0 3 5756 species 0 1851395 Actinomyces sp. Chiba101 1 1686 Actinomyces sp. oral taxon 414 1 2152 0 species 712122 Actinomyces sp. oral taxon 897 1918 1 0 species 2081702 species 0 1960083 Actinomyces gaoshouyii 1385 1 1852377 0 species 1068 1 Actinomyces pacaensis 1912795 species 0 1 353 Actinomyces sp. VUL4_3 1069494 genus 0 1 2 2745 5 Trueperella 0 species 1661 Trueperella pyogenes 2740 1 2529408 genus 0 1 1309 0 species 52773 Actinomyces meyeri 1 1309 genus 0 1653174 13 Actinotignum 1 1216 2 59505 0 species 1203 1 Actinotignum schaalii 1 2 2681 131 Mobiluncus 2050 genus 0 2051 0 species 2550 1 Mobiluncus curtisii 350 Propionibacteriales 1 34 42159 order 0 85009 family 0 85015 355 Nocardioidaceae 1 14900 13 0 genus 1839 Nocardioides 141 5699 4 1 450734 species 0 1869 1 Nocardioides dokdonensis 2086 1 2615069 0 no rank Nocardioides sp. JS614 1 2086 species 0 196162 Nocardioides sp. 78 1603 1 species 0 2045452 2328 2 1 Micropruina 20 116071 0 genus Micropruina glycogenica 2308 1 0 species 75385 genus 0 2044 8 Pimelobacter 1 2408 2 Pimelobacter simplex 1 2400 species 0 2045 genus 0 182639 83 Kribbella 1 2 2661 Kribbella flavida 2578 1 0 species 182640 Aeromicrobium 36 2 1449 1 0 genus 2040 0 species 2041 Aeromicrobium erythreum 1 1413 341 Propionibacteriaceae 1 26909 20 family 0 31957 1 4 4863 60 Cutibacterium 1912216 genus 0 Cutibacterium acnes 1175 1 0 species 1747 species 0 33010 Cutibacterium avidum 2080 1 Cutibacterium granulosum 1 1548 0 species 33011 35 Acidipropionibacterium 1 2604 2 genus 0 1912215 1 2569 Acidipropionibacterium acidipropionici 1748 0 species 1 5171 3 50 Propionibacterium 1743 genus 0 1 959 no rank 0 2608905 0 species 671223 Propionibacterium sp. oral taxon 193 1 959 species 0 1744 Propionibacterium freudenreichii 4162 1 2801844 genus 0 1639 1 1 1639 Pseudopropionibacterium propionicum 1750 0 species 72763 genus 0 1 9104 5 96 Tessaracoccus species 0 399497 Tessaracoccus flavescens 1 1855 1610493 species 0 1 1912 Tessaracoccus flavus 2635419 0 no rank 1 2196 Tessaracoccus sp. T2.5-30 1 2196 species 0 1909732 0 species 1332264 Tessaracoccus aquimaris 1 3045 0 genus 29404 Microlunatus 21 1907 2 1 29405 species 0 1886 1 Microlunatus phosphovorus genus 0 203133 7 Propionimicrobium 1 2 1280 2633994 no rank 0 1 1273 1 1273 Propionimicrobium sp. Marseille-P3275 1871034 0 species 1 191715 25 145 Bifidobacteriales 85004 order 0 family 0 31953 9993 Bifidobacteriaceae 1 191570 24 831 1 196081 genus 0 Scardovia inopinata 1 831 species 0 78259 genus 0 2701 1858 1 2702 species 0 1858 1 Gardnerella vaginalis genus 0 1678 1820 Bifidobacterium 1 19 177228 0 species 158787 Bifidobacterium scardovii 1 4960 Bifidobacterium catenulatum 2698 2 8317 1 0 species 1686 Bifidobacterium kashiwanohense 1 5619 0 subspecies 630129 41771 1 Bifidobacterium longum 216816 species 0 1 29581 Bifidobacterium bifidum 1681 species 0 963 1 Bifidobacterium coryneforme 1687 0 species Bifidobacterium choerinum 1 2752 species 0 35760 Bifidobacterium pseudolongum 1 3897 species 0 1694 1684 0 species 1 1977 Bifidobacterium asteroides 28026 0 species 1 7189 Bifidobacterium pseudocatenulatum 1685 species 0 53829 1 Bifidobacterium breve Bifidobacterium dentium 2939 1 0 species 1689 Bifidobacterium animalis 1 2786 species 0 28025 1691 0 species 1040 1 Bifidobacterium indicum Bifidobacterium angulatum 3913 1 0 species 1683 species 0 638619 Bifidobacterium actinocoloniiforme 1477 1 species 0 33905 Bifidobacterium thermophilum 2718 1 Bifidobacterium adolescentis 1 5299 0 species 1680 Parascardovia 2 2 1660 1 0 genus 196082 78258 species 0 1 1658 Parascardovia denticolens 1 4 1573 2 Actinopolysporales 622450 order 0 Actinopolysporaceae 47 3 1571 1 0 family 622451 1 2 1524 19 Actinopolyspora 1849 genus 0 414996 0 species 1505 1 Actinopolyspora erythraea 52018 0 no rank 1 337 1 337 Actinobacteria bacterium IMCC26256 1650658 species 0 order 0 85014 5 Glycomycetales 1 4 2638 0 family 85034 Glycomycetaceae 56 3 2633 1 283810 genus 0 1 2 2577 26 Stackebrandtia 0 species 283811 Stackebrandtia nassauensis 2551 1 85007 0 order 163 197462 1 Corynebacteriales 1488 52 60510 1 Corynebacteriaceae 370 1653 0 family genus 0 1716 2294 Corynebacterium 1 51 60140 0 species 35755 Corynebacterium kutscheri 1 467 1404244 species 0 972 1 Corynebacterium glyciniphilum species 0 43771 Corynebacterium urealyticum 1182 1 724 1 Corynebacterium pseudotuberculosis 1719 0 species 1423 1 Corynebacterium marinum 349751 species 0 1705 species 0 1 685 Corynebacterium stationis 2509 1 Corynebacterium jeikeium 38289 0 species 2624378 0 no rank 1877 2 702967 species 0 1079 1 Corynebacterium sp. NML98-0116 1 798 Corynebacterium sp. ATCC 6931 1487956 0 species 0 species 1223514 Corynebacterium humireducens 1879 1 0 species 108486 Corynebacterium falsenii 1 2204 1 740 Corynebacterium callunae 1721 0 species 536 1 Corynebacterium kroppenstedtii 161879 0 species species 0 1408191 Corynebacterium deserti 1 702 Corynebacterium diphtheriae 1 868 species 0 1717 1 1124 Corynebacterium ureicelerivorans 401472 species 0 571915 0 species 1 543 Corynebacterium mustelae 0 species 156978 Corynebacterium imitans 1113 1 2416 1 Corynebacterium striatum 43770 species 0 225326 0 species 1 2145 Corynebacterium halotolerans 1 974 Corynebacterium atypicum 191610 species 0 191493 species 0 1529 1 Corynebacterium sphenisci 0 species 1697 Corynebacterium ammoniagenes 1 810 1072256 0 species 955 1 Corynebacterium uterequi 1121358 species 0 1 1458 Corynebacterium doosanense 65058 species 0 854 1 Corynebacterium ulcerans 1231000 species 0 983 1 Corynebacterium lactis 38305 0 species 1 2516 Corynebacterium vitaeruminis Corynebacterium maris 1 1188 species 0 575200 Corynebacterium efficiens 1 1068 species 0 152794 1 967 Corynebacterium casei 160386 species 0 567 1 Corynebacterium crudilactis 1652495 species 0 169292 species 0 1364 1 Corynebacterium aurimucosum Corynebacterium testudinoris 1005 1 0 species 136857 species 0 42817 Corynebacterium argentoratense 1 708 Corynebacterium singulare 1473 1 species 0 161899 146827 0 species 1 1600 Corynebacterium simulans 1148 1 Corynebacterium aquilae 203263 0 species 0 species 89154 Corynebacterium terpenotabidum 841 1 [Brevibacterium] flavum 1 637 0 species 92706 493 1 Corynebacterium flavescens 28028 species 0 750 1 Corynebacterium phocae 161895 species 0 1195 1 Corynebacterium glaucum 187491 species 0 0 species 1727 Corynebacterium variabile 1335 1 1 1175 Corynebacterium resistens 258224 species 0 0 species 35757 Corynebacterium cystitidis 1 1216 1 893 Corynebacterium epidermidicanis 1050174 species 0 0 species 1718 Corynebacterium glutamicum 1382 1 1230998 0 species 1729 1 Corynebacterium frankenforstense 161896 0 species 1 924 Corynebacterium camporealensis 85025 0 family 48119 31 1 Nocardiaceae 518 1827 0 genus 23 29199 1 Rhodococcus 1311 1833 0 species 1089 1 Rhodococcus erythropolis Rhodococcus jostii 1 1546 species 0 132919 1 709 Rhodococcus qingshengii 334542 0 species Rhodococcus ruber 1 1674 species 0 1830 Rhodococcus fascians 1 1135 0 species 1828 103816 0 species 1 1144 Rhodococcus pyridinivorans 192944 no rank 0 12 12988 species 0 1564114 Rhodococcus sp. B7740 1298 1 1807790 0 species 1 602 Rhodococcus sp. BH4 species 0 1033922 Rhodococcus sp. WB1 1 1670 1279 1 Rhodococcus sp. PBTS 1 1653478 0 species Rhodococcus sp. PBTS 2 1 1072 0 species 1653479 679318 0 species 1 967 Rhodococcus sp. WMMA185 species 0 1723645 Rhodococcus sp. 008 1 777 0 species 1570939 Rhodococcus sp. 2G 1 918 Rhodococcus sp. p52 1 1023 0 species 935199 1727214 species 0 913 1 Rhodococcus sp. H-CA8f 1 1768 Rhodococcus sp. MTM3W5.2 1805827 0 species 1045808 species 0 701 1 Rhodococcus sp. YL-1 43767 0 species 1 1341 Rhodococcus hoagii 1 1022 Rhodococcus rhodochrous 1829 species 0 Rhodococcus opacus 3393 1 species 0 37919 1847 1 Rhodococcus aetherivorans 191292 0 species 278 Nocardia 1 18402 7 genus 0 1817 species 0 37326 Nocardia brasiliensis 4453 1 0 species 37329 Nocardia farcinica 1 2520 0 species 135487 Nocardia cyriacigeorgica 1 3761 455432 0 species 1 2778 Nocardia terpenica 37330 0 species 1 1950 Nocardia nova 1 2662 Nocardia seriolae 37332 0 species family 0 1762 375 Mycobacteriaceae 1 71454 57 genus 0 1073531 2914 2 1788 species 0 1 1224 Mycobacterium terrae Mycobacterium sinense 1690 1 species 0 875328 1763 genus 0 1 34 40274 3035 Mycobacterium 1303 1 species group 0 2249310 722731 0 species 1 1303 Mycobacterium shigaense 1323 1 Mycobacterium marinum 1781 0 species 1 1336 Mycobacterium kansasii 1768 0 species species 0 482462 Mycobacterium dioxanotrophicus 1599 1 8 8461 120793 species group 0 0 species 1138383 Mycobacterium paraintracellulare 474 1 Mycobacterium intracellulare 664 4 2266 1 0 species 1767 subspecies 0 1203599 Mycobacterium yongonense 399 1 222805 0 subspecies 1 759 Mycobacterium chimaera subspecies 0 35617 Mycobacterium indicus pranii 1 444 1112 1 Mycobacterium marseillense 701042 0 species 1764 0 species 2964 1 Mycobacterium avium 0 species 339268 Mycobacterium colombiense 1645 1 0 species 1809 Mycobacterium ulcerans 1 1183 1769 species 0 1 335 Mycobacterium leprae 16827 13 0 no rank 2642494 212767 0 species 1 1361 Mycobacterium sp. JS623 1920667 0 species 1 1488 Mycobacterium sp. WY10 1545728 species 0 1398 1 Mycobacterium sp. EPa45 2079 1 Mycobacterium sp. djl-10 1879023 0 species Mycobacterium sp. PYR15 1 1294 species 0 2051552 Mycobacterium sp. VKM Ac-1817D 1 1341 0 species 1273687 0 species 1570328 Mycobacterium sp. NRRL B-3805 1 1461 species 0 1561223 Mycobacterium sp. QIA-37 1 815 Mycobacterium sp. MCS 1110 1 species 0 164756 1 330 Mycobacterium sp. MOTT36Y 1168287 species 0 Mycobacterium sp. JLS 1 1244 0 species 164757 1 1741 Mycobacterium sp. YC-RL4 1682113 0 species 189918 0 species 1165 1 Mycobacterium sp. KMS 1088 1 Mycobacterium liflandii 261524 0 species species group 0 77643 3061 4 1 2371 3 944 Mycobacterium tuberculosis 1773 species 0 706 1 Mycobacterium africanum 33894 biotype 0 Mycobacterium bovis 721 1 0 biotype 1765 78331 0 species 1 690 Mycobacterium canettii Mycobacterium haemophilum 723 1 0 species 29311 717 2 1 Hoyosella 4 697025 0 genus 639313 species 0 713 1 Hoyosella subflava 5700 5 0 genus 670516 83262 species 0 1 789 Mycobacterium immunogenum 1 901 Mycobacterium chelonae 1774 species 0 1578165 species 0 1 957 Mycobacterium saopaulense species 0 36809 Mycobacterium abscessus 2188 1 1520670 0 species 1 865 Mycobacterium stephanolepidis 21474 13 genus 0 1866885 1344 1 Mycobacterium chubuense 1800 species 0 Mycobacterium phlei 1 2193 species 0 1771 0 species 134601 Mycobacterium goodii 1 1953 1797 species 0 1 1373 Mycobacterium thermoresistibile species 0 758802 Mycobacterium litorale 1350 1 1612 1 Mycobacterium fortuitum 1766 species 0 2197 1 Mycobacterium smegmatis 1772 species 0 Mycobacterium aurum 1833 1 species 0 1791 1804 species 0 1716 1 Mycobacterium gilvum species 0 110539 Mycobacterium vanbaalenii 1436 1 Mycobacterium neoaurum 1 1461 0 species 1795 Mycobacterium vaccae 1 1648 0 species 1810 1 1358 Mycobacterium rhodesiae 36814 0 species 85026 0 family 9 8893 1 Gordoniaceae 146 0 genus 2053 Gordonia 152 8 8747 1 Gordonia bronchialis 1143 1 species 0 2054 Gordonia polyisoprenivorans 1275 1 0 species 84595 0 species 2055 Gordonia terrae 1401 1 1004901 species 0 1 1110 Gordonia iterans Gordonia phthalatica 1229 1 0 species 1136941 2 2437 2657482 0 no rank 1 1102 Gordonia sp. YC-JH1 2059875 0 species 1335 1 Gordonia sp. KTR9 337191 0 species 0 family 85028 Tsukamurellaceae 19 3405 4 1 genus 0 2060 52 Tsukamurella 1 3386 3 Tsukamurella paurometabola 1 1136 0 species 2061 Tsukamurella tyrosinosolvens 2198 1 0 species 57704 no rank 0 697024 501 2 501 2 1 Lawsonella 7 1847725 0 genus 1 494 Lawsonella clevelandensis 1528099 0 species family 0 85029 8 Dietziaceae 1 4 2177 37914 0 genus 3 2169 1 Dietzia 40 1 1176 2617939 0 no rank species 0 712270 Dietzia sp. oral taxon 368 1176 1 species 0 499555 Dietzia timorensis 1 953 0 family 316606 Segniliparaceae 12 915 3 1 0 genus 286801 Segniliparus 10 2 903 1 0 species 286802 Segniliparus rotundus 893 1 9 Acidothermales 1 571 4 order 0 1643683 85032 0 family 3 562 1 Acidothermaceae 4 Acidothermus 8 558 2 1 0 genus 28048 Acidothermus cellulolyticus 1 550 species 0 28049 2 Kineosporiales 1 4 2415 order 0 622452 1 3 2413 89 Kineosporiaceae 83778 family 0 33981 genus 0 1 2324 2 14 Kineococcus 131568 species 0 2310 1 Kineococcus radiotolerans 132 Streptosporangiales 1 22484 16 order 0 85012 83676 0 family 9255 7 1 Nocardiopsaceae 192 9 Thermobifida 1 2 1356 genus 0 83677 species 0 2021 Thermobifida fusca 1347 1 0 genus 2013 Nocardiopsis 141 7707 4 1 species 0 280236 Nocardiopsis gilva 1 2615 2014 species 0 1 3044 Nocardiopsis dassonvillei 1907 1 Nocardiopsis alba 53437 0 species 2004 0 family 9904 5 1 Streptosporangiaceae 107 0 genus 2000 Streptosporangium 29 3792 2 1 species 0 2001 Streptosporangium roseum 1 3763 genus 0 83681 53 Nonomuraea 1 2 6005 no rank 0 2593643 1 5952 1909395 species 0 1 5952 Nonomuraea sp. ATCC 55076 2012 0 family 3 3193 1 Thermomonosporaceae 31 3162 2 1 Thermomonospora 53 2019 0 genus 0 species 2020 Thermomonospora curvata 1 3109 85011 0 order 82 202034 1 Streptomycetales 397 0 family 2062 Streptomycetaceae 1591 201637 81 1 1883 0 genus 187166 75 1 Streptomyces 7016 2306 1 Streptomyces albireticuli 1940 0 species 4898 2 1477431 species group 0 2497 1 Streptomyces sampsonii 42239 0 species 0 species 1902 Streptomyces coelicolor 1 2401 1 2003 Streptomyces sp. S10(2016) 1783515 0 species 408015 species 0 1 2278 Streptomyces xiamenensis 1845 1 Streptomyces collinus 42684 0 species 1 1588 Streptomyces sp. XZHG99 2049881 species 0 75293 0 species 1 2746 Streptomyces autolyticus 1 2672 Streptomyces malaysiensis 92644 0 species 2593676 0 no rank 24 53396 Streptomyces sp. Tue 6075 1 1727 0 species 1661694 species 0 206662 Streptomyces sp. FR-008 2429 1 1841249 species 0 3023 1 Streptomyces sp. RTd22 3037 1 Streptomyces sp. CdTB01 1725411 0 species 2094021 species 0 1942 1 Streptomyces sp. WAC00288 1984801 species 0 1 1910 Streptomyces sp. CLI2509 Streptomyces sp. M56 1 3075 0 species 1495638 2663 1 Streptomyces sp. CMB-StM0423 2059884 species 0 species 0 1837283 Streptomyces sp. S8 1 1738 1265601 species 0 1593 1 Streptomyces sp. PAMC 26508 234612 0 species 2383 1 Streptomyces sp. TN58 1649184 0 species 1 2049 Streptomyces sp. CFMR 7 1262452 species 0 1 2693 Streptomyces sp. 769 1 2375 Streptomyces sp. CNQ-509 444103 0 species species 0 1972846 Streptomyces sp. Sge12 2079 1 1849967 0 species 2141 1 Streptomyces sp. SAT1 Streptomyces sp. MOE7 1991 1 species 0 1961713 2224 1 Streptomyces sp. 3211 1964449 0 species 0 species 465541 Streptomyces sp. Mg1 1976 1 Streptomyces sp. fd1-xmd 1 2319 species 0 1812480 Streptomyces sp. P3 2139 1 species 0 2135430 Streptomyces sp. SirexAA-E 1 1461 0 species 862751 1917 1 Streptomyces sp. 4F 1751294 species 0 2512 1 Streptomyces sp. CCM_MD2014 1561022 0 species 4239 2 629295 0 species group 1943 1 species subgroup 0 1482558 1 1943 Streptomyces globisporus 1908 species 0 1 2296 1482596 species subgroup 0 1911 species 0 2296 1 Streptomyces griseus Streptomyces scabiei 1 2512 species 0 1930 1 2514 Streptomyces parvulus 146923 0 species 1576 1 Streptomyces pratensis 1169025 0 species species 0 1437453 Streptomyces leeuwenhoekii 1 2288 Streptomyces chartreusis 1 2373 species 0 1969 1642299 species 0 2295 1 Streptomyces alfalfae 1907 0 species 2137 1 Streptomyces glaucescens 68280 0 species 1 2455 Streptomyces violaceusniger Streptomyces niveus 1 2035 species 0 193462 species 0 68214 Streptomyces griseochromogenes 1 2423 553510 0 species 2186 1 Streptomyces gilvosporeus Streptomyces cyaneogriseus 2322 1 species 0 68192 1 1925 Streptomyces rubrolavendulae 285473 species 0 0 species 54571 Streptomyces venezuelae 1 4040 1 1910 Streptomyces violaceoruber 1935 species 0 Streptomyces alboflavus 2811 1 species 0 67267 1 5670 Streptomyces lydicus 47763 0 species 1 2788 Streptomyces lincolnensis 1915 species 0 1 1666 Streptomyces peucetius 1950 0 species Streptomyces lividans 1 2388 0 species 1916 2648 1 Streptomyces albulus 68570 species 0 Streptomyces pactum 4435 1 species 0 68249 Streptomyces vietnamensis 1 2466 species 0 362257 33903 species 0 2158 1 Streptomyces avermitilis Streptomyces formicae 1 1963 0 species 1616117 1 1922 Streptomyces lavendulae 1914 0 species 1912 0 species 5881 1 Streptomyces hygroscopicus 1543 1 Streptomyces pluripotens 1355015 0 species Streptomyces cattleya 1 2726 0 species 29303 species 0 379067 Streptomyces bingchenggensis 1 3915 Streptomyces pristinaespiralis 1 2338 species 0 38300 0 species 164348 Streptomyces puniciscabiei 1 2611 5024 1 Streptomyces albus 1888 0 species Streptomyces ambofaciens 1 2009 species 0 1889 1 2317 Streptomyces reticuli 1926 0 species species 0 1038928 Streptomyces xinghaiensis 1948 1 0 species 68202 Streptomyces fulvissimus 1 1817 1901 species 0 2216 1 Streptomyces clavuligerus 1971 0 species 1928 1 Streptomyces noursei 2063 genus 0 1 12880 5 218 Kitasatospora 1 2720 Kitasatospora albolonga 68173 0 species 2066 0 species 3463 1 Kitasatospora setae 1894 0 species 1 2769 Kitasatospora aureofaciens 2633591 0 no rank 1 3710 species 0 2018025 Kitasatospora sp. MMS16-BH015 1 3710 414714 0 order 4036 4 1 Catenulisporales 47 3 3989 1 Catenulisporaceae 69 414877 0 family 414878 genus 0 1 3920 2 43 Catenulispora 0 species 304895 Catenulispora acidiphila 1 3877 order 0 1643682 12 Geodermatophilales 1 8 7466 126 Geodermatophilaceae 1 7454 7 family 0 85030 genus 0 88138 83 Modestobacter 1 2 3580 3497 1 Modestobacter marinus 477641 species 0 Geodermatophilus 53 2440 2 1 0 genus 1860 0 species 1861 Geodermatophilus obscurus 1 2387 1 1308 2 12 Blastococcus 38501 genus 0 0 species 138336 Blastococcus saxobsidens 1 1296 147839 148 1 Micrococcales 1501 85006 0 order 3 381 1 Jonesiaceae 2 85022 0 family 43673 0 genus 2 379 1 Jonesia 8 43674 species 0 371 1 Jonesia denitrificans family 0 145357 64 Dermacoccaceae 1 7 4726 genus 0 57499 42 Kytococcus 1 1655 2 1276 0 species 1 1613 Kytococcus sedentarius genus 0 57495 18 Dermacoccus 1 1470 2 Dermacoccus nishinomiyaensis 1 1452 species 0 1274 73 Luteipulveratus 1 1537 2 genus 0 745364 Luteipulveratus mongoliensis 1 1464 0 species 571913 85020 family 0 1 11886 11 101 Dermabacteraceae 3 Dermabacter 1 1235 2 genus 0 36739 0 species 1630135 Dermabacter vaginalis 1 1232 783 2 1 Devriesea 7 472568 0 genus 472569 0 species 1 776 Devriesea agamarum Brachybacterium 193 6 9767 1 0 genus 43668 Brachybacterium sp. VR2415 1584 1 species 0 2017485 2623841 no rank 0 1931 1 Brachybacterium sp. P6-10-X1 1 1931 species 0 1903186 1876 1 Brachybacterium ginsengisoli 1331682 species 0 43669 species 0 1 2256 Brachybacterium faecium 2017484 0 species 1927 1 Brachybacterium sp. VM2412 6909 9 1 Intrasporangiaceae 69 85021 0 family 1 2015 2 44 Serinicoccus 265976 genus 0 1 1971 Serinicoccus sp. JLT9 1758689 species 0 genus 0 53457 68 Janibacter 1 1581 2 Janibacter indicus 1 1513 0 species 857417 53357 genus 0 1 2 1055 26 Intrasporangium 53358 species 0 1029 1 Intrasporangium calvum 267408 genus 0 1 2 2189 76 Arsenicicoccus 0 no rank 2663846 1 2113 1 2113 Arsenicicoccus sp. oral taxon 190 1658671 species 0 54 Cellulomonadaceae 1 6 6960 family 0 85016 Cellulomonas 84 5 6906 1 0 genus 1707 1711 0 species 1 1798 Cellulomonas flavigena no rank 0 2620175 1403 1 2003551 0 species 1 1403 Cellulomonas sp. PSBB021 Cellulomonas fimi 1996 1 0 species 1708 1 1625 Cellulomonas gilvus 11 0 species 9 9816 1 Promicromonosporaceae 148 85017 0 family 1 3835 3 32 Cellulosimicrobium 157920 genus 0 1710 0 species 1 2085 Cellulosimicrobium cellulans 2624466 no rank 0 1 1718 Cellulosimicrobium sp. TH-20 1 1718 0 species 1980001 186188 0 genus 2 2466 1 Xylanimonas 21 2445 1 Xylanimonas cellulosilytica 186189 species 0 3 3367 1 Isoptericola 95 254250 0 genus species 0 372663 Isoptericola dokdonensis 1 1638 Isoptericola variabilis 1634 1 0 species 139208 no rank 0 577468 447 2 1 Tropheryma 1 2 447 genus 0 2038 0 species 2039 Tropheryma whipplei 446 1 family 0 85018 7 Dermatophilaceae 1 3 851 1 844 2 13 Dermatophilus 1862 genus 0 Dermatophilus congolensis 831 1 species 0 1863 47583 48 1 Microbacteriaceae 704 85023 0 family genus 0 2034 108 Curtobacterium 1 4 4454 69373 species 0 1 1476 Curtobacterium pusillum 257496 no rank 0 2 2870 Curtobacterium sp. BH-2-1-1 1504 1 species 0 1905847 1561023 species 0 1366 1 Curtobacterium sp. MR_MD2014 447237 0 genus 2 1948 1 Frondihabitans 2 1 1946 2626248 0 no rank 1795630 0 species 1 1946 Frondihabitans sp. PAMC 28766 Agromyces 29 2 2432 1 0 genus 33877 species 0 453304 Agromyces aureus 1 2403 1759331 genus 0 1 1345 1 1345 Cnuibacter physcomitrellae 1619308 0 species genus 0 1434032 1 Pontimonas 1 2 308 species 0 1159327 Pontimonas salivibrio 307 1 genus 0 1705353 2 Aurantimicrobium 1 2 373 371 1 Aurantimicrobium minutum 708131 species 0 1 6 6737 398 Clavibacter 1573 genus 0 1271 Clavibacter michiganensis 1 6339 5 species 0 28447 subspecies 0 1874630 Clavibacter capsici 1274 1 31964 0 subspecies 1513 1 Clavibacter sepedonicus subspecies 0 31963 Clavibacter nebraskensis 1102 1 33014 0 subspecies 1 1179 Clavibacter insidiosus 0 genus 110932 Leifsonia 41 2 2609 1 Leifsonia xyli 1 2568 0 species 1575 1 986 2 7 Microcella 337004 genus 0 Microcella alkaliphila 979 1 species 0 279828 518733 0 genus 2 1829 1 Microterricola 2 412690 0 species 1 1827 Microterricola viridarii 0 genus 33882 Microbacterium 366 17596 14 1 0 species 162426 Microbacterium hominis 1968 1 2609290 no rank 0 10738 8 Microbacterium sp. CGR1 1 1061 0 species 1696072 species 0 367477 Microbacterium sp. XT11 1 1375 species 0 1938334 Microbacterium sp. TPU 3598 1 1167 1916917 0 species 1 1127 Microbacterium sp. 1.5R 0 species 1714373 Microbacterium sp. No. 7 1 1443 1795053 species 0 1 1561 Microbacterium sp. PAMC 28756 1 1682 Microbacterium sp. BH-3-3-3 1906742 species 0 Microbacterium sp. str. 'China' 1 1322 species 0 2103230 0 species 300019 Microbacterium paludicola 960 1 Microbacterium chocolatum 1006 1 species 0 84292 1 1416 Microbacterium aurum 36805 0 species 2033 species 0 1 1142 Microbacterium testaceum 2 987 1655488 0 no rank clade 0 1655489 987 2 2 987 0 genus 529883 0 species 529884 Rhodoluna lacicola 260 1 Candidatus Rhodoluna planktonica 727 1 species 0 535712 69578 0 genus 3 3447 1 Cryobacterium 83 0 species 670052 Cryobacterium arcticum 1524 1 2649013 no rank 0 1 1840 1 1840 Cryobacterium sp. LW097 1978566 0 species 1828 3 1 Rathayibacter 31 33886 0 genus 145458 0 species 1 556 Rathayibacter toxicus Rathayibacter tritici 1241 1 species 0 33888 family 0 125316 3 Beutenbergiaceae 1 1477 3 84756 genus 0 1 2 1474 56 Beutenbergia Beutenbergia cavernae 1418 1 0 species 84757 Brevibacteriaceae 23 2147 3 1 0 family 85019 2 2124 1 Brevibacterium 28 1696 0 genus 1 2096 Brevibacterium linens 1703 0 species Micrococcaceae 2050 40 51475 1 0 family 1268 genus 0 1645 5 Renibacterium 1 500 2 0 species 1646 Renibacterium salmoninarum 495 1 793 1 genus 0 2078575 1618207 species 0 1 793 Arthrobacter sp. IHBB 11108 1742993 genus 0 1 4692 4 52 Pseudarthrobacter Pseudarthrobacter sulfonivorans 1532 1 0 species 121292 1 1268 Pseudarthrobacter phenanthrenivorans 361575 species 0 Pseudarthrobacter chlorophenolicus 1840 1 species 0 85085 1 4 4743 161 Kocuria 57493 genus 0 71999 0 species 1 1240 Kocuria palustris 446860 0 species 1582 1 Kocuria flava 0 species 72000 Kocuria rhizophila 1760 1 1868332 genus 0 1 734 2 10 Neomicrococcus 724 1 Neomicrococcus aestuarii 556325 species 0 0 genus 32207 Rothia 12 5687 3 1 2047 0 species 1 1072 Rothia dentocariosa 0 species 43675 Rothia mucilaginosa 4603 1 1742992 0 genus 1222 2 1 Paenarthrobacter 4 species 0 43663 Paenarthrobacter aurescens 1218 1 596707 0 genus 2 2004 1 Sinomonas 28 Sinomonas atrocyanea 1 1976 0 species 37927 0 genus 1663 Arthrobacter 410 24952 15 1 no rank 0 235627 12 19595 290399 species 0 1 1633 Arthrobacter sp. FB24 0 species 1118963 Arthrobacter sp. Rue61a 1012 1 Arthrobacter sp. ZXY-2 1302 1 0 species 1806905 Arthrobacter sp. YN 1278 1 0 species 2020486 0 species 1690248 Arthrobacter sp. LS16 1 2264 0 species 1849032 Arthrobacter sp. U41 1 1863 species 0 1357915 Arthrobacter sp. QXT-31 1630 1 1771959 0 species 1372 1 Arthrobacter sp. ATCC 21022 1704044 0 species 2000 1 Arthrobacter sp. ERGS1:01 Arthrobacter sp. YC-RL1 1 2323 species 0 1652545 1273 1 Arthrobacter sp. PGP41 2079227 0 species 1494608 0 species 1 1645 Arthrobacter sp. PAMC 25486 1 2119 Arthrobacter crystallopoietes 37928 0 species 2828 1 Arthrobacter alpinus 656366 species 0 42 Micrococcus 1 2012 2 genus 0 1269 1970 1 Micrococcus luteus 1270 0 species genus 0 1742989 7 Glutamicibacter 1 2086 2 256701 0 species 1 2079 Glutamicibacter arilaitensis 1 1680 3 21 Sanguibacteraceae 145360 family 0 1659 2 1 Sanguibacter 20 60919 0 genus 0 species 60920 Sanguibacter keddieii 1 1639 1 70719 42 186 Pseudonocardiales 85010 order 0 1 41 70533 946 Pseudonocardiaceae 2070 family 0 0 genus 43356 Kutzneria 16 3448 2 1 0 species 43357 Kutzneria albida 3432 1 1 18865 7 271 Amycolatopsis 1813 genus 0 Amycolatopsis methanolica 1 2559 species 0 1814 species 0 31958 Amycolatopsis orientalis 1 4873 33910 0 species 3380 1 Amycolatopsis mediterranei no rank 0 2618356 5350 2 0 species 1911175 Amycolatopsis sp. BJA-103 2429 1 Amycolatopsis sp. AA4 1 2921 0 species 1896961 208439 0 species 1 2432 Amycolatopsis japonica 142577 genus 0 1 2 1401 18 Prauserella 530584 0 species 1383 1 Prauserella marina 165301 genus 0 1 2 3059 44 Lentzea Lentzea guizhouensis 1 3015 species 0 1586287 674734 genus 0 1 2060 2 6 Alloactinosynnema 2054 1 0 no rank 2636053 species 0 1653480 Alloactinosynnema sp. L-07 1 2054 1835 0 genus 2747 2 1 Saccharopolyspora 30 1836 species 0 2717 1 Saccharopolyspora erythraea 65496 0 genus 6 9059 1 Actinoalloteichus 160 1 1791 Actinoalloteichus sp. ADI127-7 1612552 species 0 340345 species 0 1 1366 Actinoalloteichus hymeniacidonis 3773 2 2644606 no rank 0 2072503 0 species 1 1961 Actinoalloteichus sp. AHMU CJ021 Actinoalloteichus sp. GBA129-24 1 1812 0 species 1612551 species 0 1470176 Actinoalloteichus hoggarensis 1 1969 genus 0 1851 3 Saccharomonospora 1 1072 2 1852 species 0 1069 1 Saccharomonospora viridis 0 genus 40566 Actinosynnema 141 7805 3 1 4012 1 Actinosynnema pretiosum 42197 0 species Actinosynnema mirum 3652 1 species 0 40567 2029 0 genus 2 2817 1 Kibdelosporangium 5 860235 0 species 1 2812 Kibdelosporangium phytohabitans Pseudonocardia 313 13883 8 1 0 genus 1847 1 1988 Pseudonocardia dioxanivorans 240495 0 species 2619320 no rank 0 11582 6 1688404 species 0 1 1963 Pseudonocardia sp. EC080610-09 2355 1 Pseudonocardia sp. AL041005-10 445576 0 species Pseudonocardia sp. EC080619-01 1953 1 0 species 1096856 1690815 0 species 1689 1 Pseudonocardia sp. HH130630-07 1641402 species 0 1876 1 Pseudonocardia sp. HH130629-09 1 1746 Pseudonocardia sp. EC080625-04 1096868 species 0 genus 0 2071 16 Saccharothrix 1 2 3371 Saccharothrix espanaensis 3355 1 species 0 103731 1834 4 0 no rank 1752188 Actinobacteria bacterium IMCC26077 1 165 species 0 1848755 422 1 Actinobacteria bacterium IMCC19121 1848754 species 0 490 1 Actinobacteria bacterium IMCC25003 1848255 0 species 1 757 Actinobacteria bacterium IMCC26103 1848756 species 0 0 phylum 544448 Tenericutes 4 101 58642 1 5096 2 no rank 0 713063 species 0 1911683 Tenericutes bacterium MZ-XQ 1 2778 1911684 species 0 1 2318 Tenericutes bacterium MO-XQ 1 1083 no rank 0 2799557 1912503 0 genus 1 1083 1 1083 2624196 0 no rank 0 species 1541959 Candidatus Izimaplasma sp. HR1 1083 1 31969 class 0 1 52459 97 52 Mollicutes 0 order 2085 Mycoplasmatales 12 44 20745 1 Mycoplasmataceae 54 20733 43 1 0 family 2092 Ureaplasma 1 3 876 1 0 genus 2129 Ureaplasma urealyticum 1 466 species 0 2130 0 species 134821 Ureaplasma parvum 1 409 genus 0 2093 270 Mycoplasma 1 13702 27 Mycoplasma putrefaciens 1 585 species 0 2123 136241 0 species 1 83 Mycoplasma haemocanis 171632 0 species 1 58 Mycoplasma ovis Mycoplasma haemofelis 1 73 species 0 29501 984991 0 species 1 139 Mycoplasma parvum 1 467 Mycoplasma arthritidis 2111 species 0 57372 0 species 117 1 Mycoplasma suis 28227 0 species 1 704 Mycoplasma penetrans 1 440 Mycoplasma bovoculi 45362 species 0 3981 3 species group 0 656088 Mycoplasma capricolum 1 1148 0 species 2095 species 0 2102 Mycoplasma mycoides 1 1648 Mycoplasma leachii 1185 1 species 0 2105 2104 0 species 92 1 Mycoplasma pneumoniae 2097 0 species 283 1 Mycoplasma genitalium Mycoplasma crocodyli 1 466 0 species 50052 species 0 2099 Mycoplasma hyopneumoniae 1 321 693 1 Mycoplasma yeatsii 51365 species 0 64 1 Mycoplasma wenyonii 65123 species 0 no rank 0 2683645 1 524 0 species 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 1 524 910 1 Mycoplasma hominis 2098 0 species Mycoplasma hyorhinis 762 1 0 species 2100 408 1 Mycoplasma dispar 86660 species 0 0 species 2128 Mycoplasma flocculare 1 206 2118 species 0 408 1 Mycoplasma mobile 1092 1 Mycoplasma canadense 29554 0 species 556 1 Mycoplasma gallisepticum 2096 0 species 2767358 0 genus 6101 12 0 species 48003 Mycoplasma pullorum 403 1 2107 0 species 323 1 Mycoplasma pulmonis 406 1 Mycoplasma synoviae 2109 species 0 species 0 2115 Mycoplasma fermentans 439 1 171284 species 0 1 444 Mycoplasma cynos Mycoplasma californicum 252 1 0 species 2113 2110 species 0 1 633 Mycoplasma agalactiae 29553 species 0 1 629 Mycoplasma bovirhinis Mycoplasma bovigenitalium 534 1 0 species 2112 29555 0 species 1 855 Mycoplasma canis Mycoplasma bovis 1 741 species 0 28903 Mycoplasma arginini 1 442 species 0 2094 122 Entomoplasmatales 1 24150 39 order 0 186328 1 14 6018 23 Entomoplasmataceae 33925 family 0 0 genus 46239 Mesoplasma 136 8 4124 1 2151 0 species 943 1 Mesoplasma florum 0 species 324078 Mesoplasma coleopterae 1 406 399 1 Mesoplasma entomophilum 2149 species 0 225999 0 species 526 1 Mesoplasma syrphidae species 0 219745 Mesoplasma tabanidae 1 415 Mesoplasma chauliocola 458 1 0 species 216427 0 species 138853 Mesoplasma lactucae 1 841 Entomoplasma 16 1871 5 1 0 genus 46238 0 species 215578 Entomoplasma somnilux 396 1 214888 0 species 1 489 Entomoplasma luminosum 0 species 81459 Entomoplasma melaleucae 652 1 species 0 74700 Entomoplasma freundtii 318 1 1 24 18010 64 Spiroplasmataceae 2131 family 0 17946 23 1 Spiroplasma 485 2132 0 genus 0 species 315358 Spiroplasma eriocheiris 1 514 Spiroplasma taiwanense 1 1253 species 0 2145 2637901 no rank 0 2 724 1898044 species 0 1 362 Spiroplasma sp. TU-14 species 0 1914410 Spiroplasma sp. NBRC 100390 362 1 1 792 Spiroplasma sabaudiense 216944 species 0 species 0 216937 Spiroplasma floricola 1 806 Spiroplasma diminutum 1 801 species 0 216936 216946 species 0 1 757 Spiroplasma turonicum 0 species 216938 Spiroplasma helicoides 704 1 species 0 216942 Spiroplasma litorale 1 2662 637 1 Spiroplasma cantharicola 362837 species 0 0 species 2133 Spiroplasma citri 1 667 Spiroplasma monobiae 1215 1 0 species 2136 2137 0 species 1 690 Spiroplasma apis 0 species 47834 Spiroplasma kunkelii 690 1 Spiroplasma corruscae 454 1 0 species 216934 1114980 0 species 641 1 Spiroplasma atrichopogonis 216933 0 species 563 1 Spiroplasma chrysopicola species 0 2139 Spiroplasma clarkii 1 694 species 0 2144 Spiroplasma mirum 637 1 0 species 216935 Spiroplasma culicicola 938 1 species 0 216945 Spiroplasma syrphidicola 622 1 Acholeplasmatales 14 13 7512 1 0 order 186329 0 family 2146 Acholeplasmataceae 67 12 7498 1 0 genus 2147 Acholeplasma 95 5713 5 1 38986 0 species 1 1759 Acholeplasma palmae species 0 2148 Acholeplasma laidlawii 1156 1 Acholeplasma oculi 1400 1 species 0 35623 Acholeplasma brassicae 1 1303 0 species 61635 1 1718 6 64 Candidatus Phytoplasma 33926 genus 0 952 3 85620 0 species group 229545 species 0 1 326 Aster yellows witches'-broom phytoplasma Maize bushy stunt phytoplasma 324 1 species 0 202462 100379 0 species 302 1 Onion yellows phytoplasma species group 0 85632 1 380 Candidatus Phytoplasma australiense 1 380 0 species 59748 species group 0 85630 322 1 species 0 37692 Candidatus Phytoplasma mali 1 322 1859062 0 no rank 728 2 43 Thermobaculum 1 728 2 genus 0 262406 166501 species 0 1 685 Thermobaculum terrenum phylum 0 1297 36 47903 188787 class 0 1 47903 36 303 Deinococci 0 order 118964 Deinococcales 412 31101 15 1 Deinococcaceae 183 30689 14 1 0 family 183710 1298 0 genus 30506 13 1 Deinococcus 346 0 species 1299 Deinococcus radiodurans 2794 1 Deinococcus puniceus 1 1912 species 0 1182568 species 0 309887 Deinococcus maricopensis 2225 1 0 species 310783 Deinococcus deserti 1661 1 1526 1 Deinococcus peraridilitoris 432329 0 species 1 2294 2623546 0 no rank 1 2294 Deinococcus sp. NW-56 2080419 species 0 species 0 1768108 Deinococcus actinosclerus 1 2871 55148 0 species 1 3242 Deinococcus proteolyticus 1 2805 Deinococcus soli Cha et al. 2016 1309411 0 species 0 species 1182571 Deinococcus swuensis 3555 1 2070 1 Deinococcus geothermalis 68909 species 0 3205 1 Deinococcus gobiensis 502394 species 0 order 0 2762275 1773 3 0 family 332247 Trueperaceae 18 1773 3 1 Truepera 35 1755 2 1 0 genus 332248 1 1720 Truepera radiovictrix 332249 species 0 68933 order 0 1 17 14726 181 Thermales 1 16 14545 113 Thermaceae 188786 family 0 Marinithermus 1 2 981 1 0 genus 186191 186192 species 0 980 1 Marinithermus hydrothermalis 2 2529 1 Oceanithermus 30 208447 0 genus 1 2499 Oceanithermus profundus 187137 species 0 genus 0 65551 38 Meiothermus 1 3 2686 52022 0 species 1134 1 Meiothermus silvanus Meiothermus ruber 1 1514 species 0 277 0 genus 270 Thermus 241 8236 8 1 species 0 56957 Thermus oshimai 1 986 0 species 271 Thermus aquaticus 1216 1 Thermus thermophilus 1 2507 0 species 274 no rank 0 2619321 948 1 species 0 1111069 Thermus sp. CCB_US3_UF1 948 1 species 0 37636 Thermus scotoductus 753 1 56956 0 species 1 669 Thermus brockianus Thermus parvatiensis 1 916 species 0 456163 200795 0 phylum 48 30126 1 Chloroflexi 2 1 5 3715 65 Ardenticatenia 1382928 class 0 order 0 1382929 34 Ardenticatenales 1 3650 4 47 Ardenticatenaceae 1 3616 3 family 0 1382930 1 2 3569 31 Candidatus Promineofilum 1988031 genus 0 1806508 species 0 3538 1 Candidatus Promineofilum breve Thermomicrobia 28 2812 9 1 0 class 189775 0 subclass 85000 4 1885 order 0 85001 64 Sphaerobacterales 1 4 1885 1821 3 255728 0 suborder 85002 family 0 1 1821 3 19 Sphaerobacteraceae 2056 0 genus 2 1802 1 Sphaerobacter 21 Sphaerobacter thermophilus 1 1781 0 species 2057 189776 order 0 1 899 4 12 Thermomicrobiales family 0 189777 3 Thermomicrobiaceae 1 887 3 499 0 genus 2 884 1 Thermomicrobium 2 0 species 500 Thermomicrobium roseum 882 1 8 7474 1 Anaerolineae 16 292625 0 class 292629 order 0 1 7 7458 24 Anaerolineales 292628 family 0 1 6 7434 37 Anaerolineaceae 0 genus 2019482 Brevefilum 4 822 2 1 Brevefilum fermentans 818 1 species 0 1986204 3 Anaerolinea 1 2628 2 genus 0 233189 2625 1 Anaerolinea thermophila 167964 species 0 1 3947 no rank 0 1324991 1889813 species 0 1 3947 Anaerolineaceae bacterium oral taxon 439 32061 0 class 11 7653 1 Chloroflexia 17 Chloroflexales 44 7636 10 1 0 order 32064 suborder 0 1508594 5 4159 1106 family 0 1 4159 5 5 Chloroflexaceae 1107 genus 0 1 4154 4 42 Chloroflexus 2 2939 1 Chloroflexus aurantiacus 1471 1108 0 species Chloroflexus sp. Y-400-fl 1468 1 strain 0 480224 0 species 152260 Chloroflexus aggregans 1173 1 suborder 0 1508595 3433 4 4 3433 1 Roseiflexaceae 10 1508635 0 family genus 0 120961 12 Roseiflexus 1 3423 3 species 0 120962 Roseiflexus castenholzii 1864 1 0 no rank 2609473 1 1547 Roseiflexus sp. RS-1 1 1547 species 0 357808 Dehalococcoidia 6 9 6017 1 0 class 301297 Dehalococcoidales 1 5 4143 1 0 order 1202465 0 family 1202464 Dehalococcoidaceae 1 4 4142 1 61434 genus 0 1 3 4141 6 Dehalococcoides 237581 0 no rank 501 1 1 501 Dehalococcoides sp. UCH007 1522671 0 species 1 3634 Dehalococcoides mccartyi 61435 species 0 1 3 1868 7 Dehalogenimonas 670486 genus 0 Dehalogenimonas formicexedens 952 1 0 species 1839801 Dehalogenimonas lykanthroporepellens 1 909 species 0 552810 Caldilineae 66 5 2453 1 0 class 475962 11 Caldilineales 1 2387 4 order 0 475963 Caldilineaceae 6 3 2376 1 0 family 475964 Caldilinea 23 2 2370 1 0 genus 233191 2347 1 Caldilinea aerophila 133453 0 species 1239 phylum 0 1 731 10435189 383 Firmicutes 84086 no rank 0 1 3139 3139 1 endosymbiont 'TC1' of Trimyema compressum 243899 0 species 3116 2 0 no rank 33974 genus 0 1930845 36 Ndongobacter 1 3116 2 0 species 1871025 Ndongobacter massiliensis 1 3080 31 102493 1 Negativicutes 80 909932 0 class 1564 Veillonellales 1 35955 11 order 0 1843489 1 34391 10 1372 Veillonellaceae 31977 family 0 1 6289 3 32 Veillonella 29465 genus 0 species 0 29466 Veillonella parvula 3597 1 2660 1 Veillonella rodentium 248315 0 species 772 Megasphaera 1 2 14732 genus 0 906 0 species 907 Megasphaera elsdenii 13960 1 Negativicoccus 7 2 3402 1 0 genus 909928 species 0 1702287 Negativicoccus massiliensis 3395 1 genus 0 39948 108 Dialister 1 2 8596 39950 species 0 8488 1 Dialister pneumosintes 44222 14 1 Selenomonadales 151 909929 0 order 1843491 family 0 1 39529 9 275 Selenomonadaceae 158846 genus 0 1 2 4212 6 Megamonas 4206 1 Megamonas hypermegale 158847 0 species 970 0 genus 35042 6 1 Selenomonas 274 971 0 species 9060 1 Selenomonas ruminantium 18181 3 no rank 0 2637378 Selenomonas sp. oral taxon 920 1 5922 species 0 1884263 Selenomonas sp. oral taxon 136 6877 1 species 0 713030 0 species 712538 Selenomonas sp. oral taxon 478 1 5382 69823 0 species 7527 1 Selenomonas sputigena 1843490 family 0 1 4542 4 39 Sporomusaceae 4503 3 1 Pelosinus 33 365348 0 genus 1 2078 0 no rank 2629460 484770 species 0 2078 1 Pelosinus sp. UFO1 0 species 365349 Pelosinus fermentans 2392 1 Acidaminococcales 43 22236 5 1 0 order 1843488 78 Acidaminococcaceae 1 22193 4 family 0 909930 904 genus 0 1 3 22115 192 Acidaminococcus 187327 0 species 14206 1 Acidaminococcus intestini Acidaminococcus fermentans 1 7717 species 0 905 186801 class 0 1 9106244 226 735 Clostridia Natranaerobiales 6 1349 4 1 0 order 485256 0 family 485255 Natranaerobiaceae 7 1343 3 1 genus 0 375928 116 Natranaerobius 1 1336 2 0 species 375929 Natranaerobius thermophilus 1 1220 9516 12 1 Halanaerobiales 2 53433 0 order family 0 53434 9 Halobacteroidaceae 1 4782 5 0 genus 42417 Halobacteroides 4 996 2 1 0 species 42422 Halobacteroides halobius 1 992 3777 2 1 Acetohalobium 7 28186 0 genus 0 species 28187 Acetohalobium arabaticum 1 3770 1 6 4732 6 Halanaerobiaceae 972 family 0 2330 genus 0 1 3 2969 59 Halanaerobium 2331 0 species 1459 1 Halanaerobium praevalens Halanaerobium hydrogeniformans 1 1451 species 0 656519 1 2 1757 13 Halothermothrix 32636 genus 0 0 species 31909 Halothermothrix orenii 1 1744 Clostridiales 23602 166 9034982 1 0 order 186802 463823 10 538999 0 no rank 1 3202 3 28 Clostridiales Family XVII. Incertae Sedis 539000 family 0 1 2 3174 16 Thermaerobacter 73918 genus 0 1 3158 Thermaerobacter marianensis 73919 0 species 19 Clostridiales Family XIII. Incertae Sedis 1 11372 4 family 0 543314 [Eubacterium] sulci 6544 1 0 species 143393 11 Mogibacterium 1 4809 2 genus 0 86331 0 species 114527 Mogibacterium diversum 4798 1 324924 1 2717089 genus 0 Mordavella sp. Marseille-P3756 324924 1 species 0 2086584 1380 Intestinimonas 1 2 124325 genus 0 1392389 1297617 0 species 1 122945 Intestinimonas butyriciproducens 6006 3 1 Symbiobacteriaceae 25 543349 0 family 49 Symbiobacterium 1 5981 2 genus 0 2733 2734 0 species 1 5932 Symbiobacterium thermophilum 0 family 186803 Lachnospiraceae 3214 4012039 27 1 730947 2 186928 no rank 0 39491 species 0 701203 1 [Eubacterium] rectale species 0 712991 Lachnospiraceae bacterium oral taxon 500 29744 1 1 199539 genus 0 2569097 1 199539 [Eubacterium] hallii 39488 0 species 228 Anaerostipes 1 413942 2 genus 0 207244 413714 1 Anaerostipes hadrus 649756 0 species Cellulosilyticum 41 8776 2 1 0 genus 698776 8735 1 Cellulosilyticum lentocellum 29360 species 0 34562 1 2719231 genus 0 84030 0 species 1 34562 [Clostridium] saccharolyticum 28050 genus 0 730861 1 1 730861 [Eubacterium] eligens 39485 species 0 1 3 200048 252 Blautia 572511 genus 0 2648079 no rank 0 71540 1 1796616 0 species 71540 1 Blautia sp. YL58 Blautia hansenii 128256 1 species 0 1322 3 53816 1 Butyrivibrio 68 830 0 genus 185008 species 0 26763 1 Butyrivibrio hungatei Butyrivibrio proteoclasticus 26985 1 0 species 43305 1 15923 2 13 Anaerotignum 2039240 genus 0 28446 0 species 15910 1 Anaerotignum propionicum 2719313 genus 0 165786 1 [Clostridium] bolteae 165786 1 species 0 208479 0 genus 841 Roseburia 57 2 1254163 1 Roseburia hominis 1254106 1 0 species 301301 0 genus 1506553 Lachnoclostridium 788 4 190198 1 0 species 1871021 Lachnoclostridium phocaeense 122851 1 1 17234 Lachnoclostridium phytofermentans 66219 species 0 2608895 no rank 0 49325 1 1834196 0 species 1 49325 Lachnoclostridium sp. YL32 2 10264 1 Herbinix 15 1663717 0 genus Herbinix luporum 1 10249 0 species 1679721 1 3 4505 22 Heliobacteriaceae 31984 family 0 2697 0 genus 2 4483 1 Heliobacterium 192 0 species 35701 Heliobacterium modesticaldum 4291 1 2304686 family 0 12 122858 0 genus 236752 Fastidiosipila 11 2 1985 1 236753 species 0 1 1974 Fastidiosipila sanguinis 2304693 genus 0 9600 1 [Clostridium] thermosuccinogenes 9600 1 species 0 84032 0 genus 1508657 Ruminiclostridium 1683 2 8436 1 [Clostridium] cellulolyticum 1 6753 0 species 1521 1 5927 2 6 Mageeibacillus 1637257 genus 0 5921 1 Mageeibacillus indolicus 884684 0 species 2305130 0 no rank 76032 1 1834198 species 0 76032 1 Ruminiclostridium sp. KB18 3 15455 genus 0 2304692 0 species 1677857 Herbivorax saccincola 1 4277 1515 0 species 6120 1 Ruminiclostridium thermocellum 288965 0 species 5058 1 [Clostridium] clariflavum 2304691 genus 0 5423 1 5423 1 [Clostridium] stercorarium 1510 species 0 1 4233 5 5 Syntrophomonadaceae 68298 family 0 0 genus 129001 Syntrophothermus 2 2477 2 1 86170 0 species 2475 1 Syntrophothermus lipocalidus 862 0 genus 1751 2 1 Syntrophomonas 3 863 species 0 1748 1 Syntrophomonas wolfei 871 Peptostreptococcaceae 1 12 264733 family 0 186804 genus 0 44259 19 Filifactor 1 2 3112 Filifactor alocis 1 3093 species 0 143361 9 Peptoclostridium 1 2 4271 genus 0 1481960 Peptoclostridium acidaminophilum 1 4262 species 0 1731 genus 0 186831 7 Acetoanaerobium 1 3660 2 1511 species 0 1 3653 Acetoanaerobium sticklandii 1870884 0 genus 243642 2 1 Clostridioides 484 1496 0 species 1 243158 Clostridioides difficile 1 2997 1411023 no rank 0 Peptostreptococcaceae bacterium oral taxon 929 1 2997 0 species 2081703 6180 2 1 Paeniclostridium 1 1849828 0 genus 0 species 1505 Paeniclostridium sordellii 1 6179 1 12 3685949 1139 Ruminococcaceae 541000 family 0 253238 genus 0 1 2 30471 17 Ethanoligenens species 0 253239 Ethanoligenens harbinense 1 30454 19231 1 552397 0 no rank 0 species 29343 [Clostridium] cellulosi 1 19231 no rank 0 2305133 45026 1 1572656 0 species 45026 1 Ruminococcaceae bacterium CPB6 946234 genus 0 1 127631 2 255 Flavonifractor 292800 0 species 1 127376 Flavonifractor plautii genus 0 1263 760 Ruminococcus 1 3 376198 58237 1 Ruminococcus albus 1264 species 0 Ruminococcus bicirculans 317201 1 species 0 1160721 216851 genus 0 1 3086253 2 2032 Faecalibacterium 853 species 0 3084221 1 Faecalibacterium prausnitzii Eubacteriaceae 37 34803 5 1 0 family 186806 genus 0 1730 1643 Eubacterium 1 2 31633 1736 0 species 1 29990 Eubacterium limosum 0 genus 33951 Acetobacterium 26 3133 2 1 Acetobacterium woodii 3107 1 species 0 33952 Oscillospiraceae 11 39659 3 1 0 family 216572 89 Oscillibacter 1 39648 2 genus 0 459786 351091 species 0 39559 1 Oscillibacter valericigenes 990719 0 family 48452 3 1 Christensenellaceae 90 1162 Christensenella 1 2 48362 genus 0 990721 species 0 1805714 Christensenella massiliensis 1 47200 186807 0 family 61791 29 1 Peptococcaceae 206 2282740 0 genus 2951 1 species 0 102134 Desulfotomaculum gibsoniae 1 2951 Candidatus Desulforudis 10 2 1814 1 0 genus 471826 1 1804 Candidatus Desulforudis audaxviator 471827 species 0 0 genus 278993 Thermincola 4 2100 2 1 Thermincola potens 1 2096 species 0 863643 51514 0 genus 6965 2 1 Dehalobacterium 22 Dehalobacterium formicoaceticum 1 6943 species 0 51515 1562 0 genus 5 9180 1 Desulfotomaculum 220 1 1286 Desulfotomaculum nigrificans 1565 0 species Desulfotomaculum ferrireducens 2308 1 0 species 1833852 Desulfotomaculum reducens 2446 1 species 0 59610 1564 0 species 2920 1 Desulfotomaculum ruminis Dehalobacter 87 9763 4 1 0 genus 56112 0 species 55583 Dehalobacter restrictus 1 3171 0 no rank 2635733 6505 2 Dehalobacter sp. DCA 1 3121 0 species 1147129 species 0 1131462 Dehalobacter sp. CF 3384 1 13049 5 1 Desulfitobacterium 113 36853 0 genus 0 species 49338 Desulfitobacterium hafniense 1 5486 142877 species 0 1 2473 Desulfitobacterium metallireducens 1 2574 Desulfitobacterium dehalogenans 36854 0 species Desulfitobacterium dichloroeliminans 2403 1 0 species 233055 genus 0 79206 170 Desulfosporosinus 1 4 9624 1 2365 Desulfosporosinus orientis 1563 0 species Desulfosporosinus meridiei 1 2852 species 0 79209 885581 species 0 1 4237 Desulfosporosinus acidiphilus 0 genus 51196 Syntrophobotulus 13 3781 2 1 Syntrophobotulus glycolicus 1 3768 0 species 51197 2358 1 2282742 genus 0 0 species 58138 Desulfotomaculum acetoxidans 2358 1 0 family 31979 Clostridiaceae 1284 262529 41 1 390805 0 genus 6577 2 1 Geosporobacter 16 Geosporobacter ferrireducens 6561 1 0 species 1424294 genus 0 1981033 Mordavella 381 1 genus 0 49082 134 Candidatus Arthromitus 1 5022 4 2638829 0 no rank 4888 3 1492 1 Candidatus Arthromitus sp. SFB-mouse 49118 species 0 1971 1 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 0 species 1 1425 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 0 species 1 7352 3 44 Alkaliphilus 114627 genus 0 208226 0 species 4156 1 Alkaliphilus metalliredigens Alkaliphilus oremlandii 1 3152 species 0 461876 genus 0 1485 1716 Clostridium 1 241913 30 5476 1 Clostridium taeniosporum 394958 0 species 1492 species 0 1 9573 Clostridium butyricum 5914 1 Clostridium chauvoei 46867 0 species 3960 1 Clostridium tyrobutyricum 1519 species 0 Clostridium botulinum 1 26497 0 species 1491 1509 0 species 1 4395 Clostridium sporogenes Clostridium acetobutylicum 4600 1 0 species 1488 4847 1 Clostridium carboxidivorans 217159 species 0 50859 2 no rank 0 2614128 0 species 755731 Clostridium sp. BNL1100 1 8743 0 species 1042156 Clostridium sp. SY8519 1 42116 1502 species 0 1 11238 Clostridium perfringens Clostridium saccharoperbutylacetonicum 1 8187 0 species 36745 species 0 84023 Clostridium autoethanogenum 4742 1 1513 0 species 4658 1 Clostridium tetani species 0 169679 Clostridium saccharobutylicum 1 7240 Clostridium estertheticum 4963 1 species 0 238834 8653 1 Clostridium cellulovorans 1493 0 species 1 3873 Clostridium novyi 1542 0 species Clostridium cochlearium 4290 1 0 species 1494 Clostridium kluyveri 1 6638 species 0 1534 29341 species 0 5225 1 Clostridium argentinense 1538 species 0 5571 1 Clostridium ljungdahlii 8673 1 Clostridium baratii 1561 0 species Clostridium bornimense 1 6752 0 species 1216932 1520 0 species 11978 1 Clostridium beijerinckii Clostridium pasteurianum 1 8819 0 species 1501 84022 0 species 3362 1 Clostridium aceticum 1497 species 0 1 4155 Clostridium formicaceticum 1548 0 species 5059 1 Clostridium scatologenes 0 order 68295 Thermoanaerobacterales 79 56804 39 1 39 Thermoanaerobacterales Family III. Incertae Sedis 1 13 28240 family 0 543371 1 21733 9 602 Caldicellulosiruptor 44000 genus 0 31899 0 species 2110 1 Caldicellulosiruptor bescii Caldicellulosiruptor hydrothermalis 2199 1 0 species 413888 species 0 44001 Caldicellulosiruptor saccharolyticus 2140 1 52766 0 species 1 2789 Caldicellulosiruptor lactoaceticus 413889 species 0 2923 1 Caldicellulosiruptor kronotskyensis species 0 717609 Caldicellulosiruptor obsidiansis 2522 1 3192 1 Caldicellulosiruptor owensensis 55205 species 0 52765 0 species 1 3256 Caldicellulosiruptor kristjanssonii Thermoanaerobacterium 29 3 6468 1 0 genus 28895 Thermoanaerobacterium xylanolyticum 1 2472 0 species 29329 1517 species 0 3967 1 Thermoanaerobacterium thermosaccharolyticum 543372 family 0 1 1772 3 10 Thermoanaerobacterales Family IV. Incertae Sedis genus 0 252965 1 Mahella 1 1762 2 1761 1 Mahella australiensis 252966 species 0 186814 family 0 1 25985 20 56 Thermoanaerobacteraceae 1 Caldanaerobacter 1 1497 2 genus 0 249529 species 0 911092 Caldanaerobacter subterraneus 1 1496 2 1564 1 Carboxydothermus 55 129957 0 genus 129958 0 species 1 1509 Carboxydothermus hydrogenoformans 1 9 18244 739 Thermoanaerobacter 1754 genus 0 species 0 46354 Thermoanaerobacter wiegelii 2186 1 Thermoanaerobacter mathranii 1971 1 species 0 583357 2636821 0 no rank 2 4098 573062 species 0 2098 1 Thermoanaerobacter sp. X513 399726 species 0 1 2000 Thermoanaerobacter sp. X514 2358 1 Thermoanaerobacter pseudethanolicus 496866 0 species species 0 29323 Thermoanaerobacter brockii 2357 1 Thermoanaerobacter kivui 2633 1 0 species 2325 Thermoanaerobacter italicus 1902 1 0 species 108150 140458 0 genus 2 1238 1 Thermacetogenium 25 Thermacetogenium phaeum 1213 1 0 species 85874 3386 4 0 no rank 42857 genus 0 44260 10 Moorella 1 2191 2 2181 1 Moorella thermoacetica 1525 0 species genus 0 42837 8 Ammonifex 1 2 1195 species 0 42838 Ammonifex degensii 1 1187 227387 family 0 2 728 Thermodesulfobium 1 728 2 1 0 genus 227388 Thermodesulfobium narugense 1 727 species 0 184064 4 2858 2770089 0 order 2770093 family 0 1356 2 291988 genus 0 1 2 1356 4 Thermosediminibacter 291990 species 0 1352 1 Thermosediminibacter oceani family 0 2770092 1502 2 1 2 1502 1 Tepidanaerobacter 499228 genus 0 Tepidanaerobacter acetatoxydans 1 1501 species 0 499229 14 Limnochordia 1 5 2627 class 0 1676648 2613 4 1 Limnochordales 35 1676649 0 order 1 2578 3 20 Limnochordaceae 1676650 family 0 47 Limnochorda 1 2 2558 genus 0 1676651 2511 1 Limnochorda pilosa 1555112 0 species 0 class 91061 Bacilli 630 435 1122000 1 268 487454 1 Bacillales 1039 1385 0 order 46 137410 1 Paenibacillaceae 470 186822 0 family 1 5573 2 32 Thermobacillus 76632 genus 0 species 0 377615 Thermobacillus composti 1 5541 1 7790 4 22 Brevibacillus 55080 genus 0 Brevibacillus brevis 1 2987 0 species 1393 3259 1 Brevibacillus laterosporus 1465 0 species 1 1522 Brevibacillus formosus 54913 species 0 844 Paenibacillus 1 119450 36 genus 0 44249 species 0 1763538 Paenibacillus crassostreae 1 1372 species 0 414771 Paenibacillus donghaensis 1 4364 Paenibacillus terrae 1 2312 species 0 159743 1 1737 Paenibacillus swuensis 1178515 0 species 13 43564 0 no rank 185978 481743 0 species 1 4051 Paenibacillus sp. Y412MC10 1782 1 Paenibacillus sp. FSL R5-0345 1536770 species 0 0 species 1536775 Paenibacillus sp. FSL H7-0737 1 1802 Paenibacillus sp. IHBB 10380 1 2118 species 0 1566358 1536773 0 species 4621 1 Paenibacillus sp. FSL R7-0331 1 5140 Paenibacillus sp. FSL P4-0081 1536769 0 species 324057 0 species 2613 1 Paenibacillus sp. JDR-2 Paenibacillus sp. FSL R7-0273 4803 1 0 species 1536772 2069255 0 species 1 1858 Paenibacillus sp. lzh-N1 2222 1 Paenibacillus sp. BIHB4019 1870819 species 0 3989 1 Paenibacillus sp. FSL H7-0357 1536774 species 0 0 species 1695218 Paenibacillus sp. 32O-W 1 3479 5086 1 Paenibacillus sp. FSL R5-0912 1536771 0 species 1126833 species 0 1 3110 Paenibacillus beijingensis 365617 0 species 1 2739 Paenibacillus sabinae 6628 1 Paenibacillus polymyxa 1406 species 0 species 0 1616788 Paenibacillus bovis 3141 1 0 species 189425 Paenibacillus graminis 1 3908 0 species 1464 Paenibacillus larvae 1677 1 59893 species 0 2100 1 Paenibacillus peoriae Paenibacillus ihbetae 1 4241 species 0 1870820 61624 0 species 1 6195 Paenibacillus mucilaginosus Paenibacillus odorifer 2066 1 0 species 189426 Paenibacillus durus 5835 1 species 0 44251 2044880 species group 0 3645 1 483937 species 0 3645 1 Paenibacillus riograndensis 528191 0 species 2560 1 Paenibacillus xylanexedens 0 species 169760 Paenibacillus stellifer 1 5086 0 species 162209 Paenibacillus naphthalenovorans 1 2647 160799 species 0 1 4268 Paenibacillus borealis species 0 1462996 Paenibacillus yonginensis 1 3412 172713 0 species 1999 1 Paenibacillus kribbensis 4127 3 85151 no rank 0 1 3 4127 7 Aneurinibacillus 55079 genus 0 1 2132 Aneurinibacillus soli 1500254 0 species 2642329 no rank 0 1988 1 1450761 0 species 1 1988 Aneurinibacillus sp. XH2 2783 3 0 family 186824 Laceyella 31 1 0 genus 292635 1677050 genus 0 1 2752 2 97 Novibacillus 1471761 species 0 1 2655 Novibacillus thermophilus no rank 0 539002 9 8529 539738 0 no rank 2272 2 2 Gemella 1 2272 2 genus 0 1378 1 2270 0 no rank 2624949 Gemella sp. oral taxon 928 1 2270 0 species 1785995 539742 0 no rank 6257 7 1 7 6257 167 Exiguobacterium 33986 genus 0 Exiguobacterium sibiricum 1179 1 species 0 332410 3852 4 2644629 0 no rank 1 1414 Exiguobacterium sp. U13-1 1849031 species 0 1224749 species 0 843 1 Exiguobacterium sp. ZWU0009 1399115 species 0 1 619 Exiguobacterium sp. MH3 360911 0 species 1 976 Exiguobacterium sp. AT1b Exiguobacterium antarcticum 1059 1 species 0 132920 186820 0 family 12880 9 1 Listeriaceae 23 Listeria 328 6 11283 1 0 genus 1637 Listeria seeligeri 1518 1 species 0 1640 Listeria welshimeri 1 1528 species 0 1643 1260 1 Listeria innocua 1642 species 0 Listeria ivanovii 2167 1 0 species 1638 0 species 1639 Listeria monocytogenes 4482 1 2 Brochothrix 1 1574 2 genus 0 2755 species 0 2756 Brochothrix thermosphacta 1572 1 90964 0 family 56811 42 1 Staphylococcaceae 2841 0 genus 2005363 Auricoccucs 115 2 893 1 1849491 0 species 1 778 Auricoccus indicus 31 Macrococcus 1 4 4387 genus 0 69965 0 species 1855823 Macrococcus canis 1 1784 1 1534 Macrococcus caseolyticus 69966 0 species 1038 1 2619255 0 no rank 1898474 species 0 1038 1 Macrococcus sp. IME1552 0 genus 45669 Salinicoccus 109 1538 2 1 1429 1 Salinicoccus halodurans 407035 0 species Staphylococcus 1291 47152 33 1 0 genus 1279 0 species 643214 Staphylococcus stepanovicii 1 1392 Staphylococcus condimenti 1245 1 0 species 70255 species 0 1280 Staphylococcus aureus 6078 1 1281 species 0 1 809 Staphylococcus carnosus Staphylococcus pseudintermedius 1 2608 species 0 283734 Staphylococcus kloosii 1002 1 species 0 29384 0 species 1290 Staphylococcus hominis 1 868 1284 species 0 1 1493 Staphylococcus hyicus 0 species 1292 Staphylococcus warneri 1 1614 0 species 70258 Staphylococcus piscifermentans 1 732 46127 0 species 1 1119 Staphylococcus felis species 0 308354 Staphylococcus simiae 1177 1 0 species 1283 Staphylococcus haemolyticus 1 1559 no rank 0 91994 1276 1 1276 1 Staphylococcus sp. AntiMn-1 1715860 species 0 2618 1 Staphylococcus pasteuri 45972 0 species 0 species 1282 Staphylococcus epidermidis 2084 1 Staphylococcus simulans 1 1479 0 species 1286 29382 species 0 1 1064 Staphylococcus cohnii 1296 0 species 1211 1 Staphylococcus sciuri 0 species 170573 Staphylococcus pettenkoferi 1 1213 0 species 1288 Staphylococcus xylosus 1875 1 246432 species 0 1485 1 Staphylococcus equorum species 0 155085 Staphylococcus lutrae 1 646 species 0 28035 Staphylococcus lugdunensis 900 1 773 1 Staphylococcus muscae 1294 species 0 Staphylococcus saprophyticus 1309 1 species 0 29385 Staphylococcus succinus 1 872 species 0 61015 937 1 Staphylococcus nepalensis 214473 0 species 1 1058 Staphylococcus agnetis 985762 species 0 29388 0 species 1 732 Staphylococcus capitis 1 1115 Staphylococcus schleiferi 1295 0 species 1 1518 Staphylococcus argenteus 985002 species 0 49 Alicyclobacillaceae 1 12776 9 family 0 186823 48 Tumebacillus 1 3 6241 genus 0 432330 Tumebacillus avium 1 3882 species 0 1903704 Tumebacillus algifaecis 1 2311 species 0 1214604 Alicyclobacillus 25 3465 2 1 0 genus 29330 3440 1 Alicyclobacillus acidocaldarius 405212 species 0 1 3 3021 77 Kyrpidia 1129704 genus 0 1 1312 Kyrpidia sp. EA-1 2055160 0 species 33943 species 0 1632 1 Kyrpidia tusciae Bacillaceae 634 120 217211 1 0 family 186817 4894 2 2675229 genus 0 264697 0 species 1533 1 Bacillus muralis Bacillus simplex 1 3361 species 0 1478 2 3600 0 genus 2675230 2033 1 Bacillus oceanisediminis 665099 0 species 859143 0 species 1 1567 Bacillus kochii 5 Lentibacillus 1 2 1556 genus 0 175304 Lentibacillus amyloliquefaciens 1 1551 species 0 1472767 351195 genus 0 1 1066 1230341 0 species 1066 1 Salimicrobium jeotgali 182709 genus 0 1 2133 2 6 Oceanobacillus 1 2127 Oceanobacillus iheyensis 182710 0 species 7139 Bacillus 1 134073 58 genus 0 1386 0 species 1408 Bacillus pumilus 5755 1 1 1409 Bacillus aryabhattai 412384 species 0 1 1248 Bacillus xiamenensis 1178537 0 species 1602 1 Bacillus flexus 86664 species 0 species group 0 1792192 1 1203 Bacillus altitudinis 1 1203 species 0 293387 1 2343 Bacillus safensis 561879 0 species species 0 1471 Bacillus methanolicus 1 2150 0 species 1413 Bacillus cellulosilyticus 1581 1 1 1409 Bacillus horikoshii 79883 species 0 Bacillus glycinifermentans 3104 1 species 0 1664069 27210 9 653685 0 species group 9248 1 Bacillus subtilis 1423 species 0 Bacillus sonorensis 1 2324 species 0 119858 606 1 Bacillus vallismortis 72361 0 species 0 species 1452 Bacillus atrophaeus 1 2239 1938374 0 species subgroup 9116 3 0 species 659243 Bacillus siamensis 1 1319 Bacillus velezensis 1 3233 0 species 492670 Bacillus amyloliquefaciens 1 4564 0 species 1390 0 species 1648923 Bacillus paralicheniformis 1898 1 1 1779 Bacillus licheniformis 1402 0 species Bacillus gibsonii 265 1 species 0 79881 species 0 1404 Bacillus megaterium 1 4083 0 species 324767 Bacillus infantis 2178 1 41171 10 species group 0 86661 0 species 658666 Bacillus bombysepticus 1 1683 Bacillus cereus 1 12991 0 species 1396 2750818 0 no rank 3 4824 2046 1 Bacillus sp. FDAARGOS_235 1839798 0 species 1152 1 Bacillus sp. ABP14 1892404 0 species 1 1626 Bacillus sp. HBCD-sjtu 2053832 species 0 1 4469 Bacillus mycoides 1405 species 0 1243 1 Bacillus anthracis 1392 0 species species 0 1428 Bacillus thuringiensis 1 12682 2083 1 Bacillus cytotoxicus 580165 0 species 1 1196 Bacillus toyonensis 155322 0 species 1905 1 Bacillus weihaiensis 1547283 0 species 0 species 632773 Bacillus beveridgei 1567 1 135735 0 species 1 2638 Bacillus endophyticus 1209 1 Bacillus smithii 1479 0 species 185979 0 no rank 19 18113 666686 species 0 2207 1 Bacillus sp. 1NLA3E Bacillus sp. X1(2014) 1353 1 0 species 1565991 0 species 1574141 Bacillus sp. YP1 1 287 Bacillus sp. IHB B 7164 1 1109 species 0 1827146 1 1073 Bacillus sp. SJ-10 563169 0 species species 0 1570330 Bacillus sp. BH072 1 376 0 species 1941347 Bacillus sp. 275 1 879 Bacillus sp. JS 1 907 0 species 1127744 0 species 2026248 Bacillus sp. 1s-1 1 1301 2009331 species 0 1 542 Bacillus sp. MD-5 399 1 Bacillus sp. Lzh-5 2049935 0 species 1406 1 Bacillus sp. SDLI1 1774743 0 species 1307 1 Bacillus sp. H15-1 1856406 species 0 0 species 756828 Bacillus sp. WP8 1 972 Bacillus sp. FJAT-14266 1 1395 species 0 1837130 species 0 1446792 Bacillus sp. Pc3 1 999 1 1074 Bacillus sp. OxB-1 98228 0 species 281 1 Bacillus sp. LM 4-2 1628753 0 species 1409 0 species 246 1 Bacillus sp. (in: Bacteria) species 0 33932 Bacillus cohnii 1229 1 3562 1 Bacillus coagulans 1398 species 0 2456 3 1 Halobacillus 4 45667 0 genus 1 1234 Halobacillus mangrovi 402384 0 species Halobacillus halophilus 1 1218 0 species 1570 1 2 2017 1 Aeribacillus 1055323 genus 0 33936 species 0 1 2016 Aeribacillus pallidus genus 0 459532 1 Terribacillus 1 1754 2 species 0 586416 Terribacillus aidingensis 1 1753 1 7 10093 30 Virgibacillus 84406 genus 0 no rank 0 2620237 2640 2 1 1495 Virgibacillus sp. 6R 1911587 species 0 Virgibacillus sp. SK37 1145 1 species 0 403957 1 1447 Virgibacillus halodenitrificans 1482 species 0 0 species 2017483 Virgibacillus phasianinus 1 1369 1 2990 Virgibacillus pantothenticus 1473 0 species Virgibacillus necropolis 1617 1 species 0 163877 1 1977 2 7 Parageobacillus 1906945 genus 0 species 0 1426 Parageobacillus thermoglucosidasius 1970 1 150247 genus 0 1 7235 6 245 Anoxybacillus 2492 2 0 no rank 2639704 1490052 0 species 1 1428 Anoxybacillus sp. B2M1 1490057 0 species 1064 1 Anoxybacillus sp. B7M1 species 0 198467 Anoxybacillus gonensis 944 1 2292 1 Anoxybacillus flavithermus 33934 0 species 294699 species 0 1262 1 Anoxybacillus amylolyticus Geobacillus 1245 15 17232 1 0 genus 129337 Geobacillus genomosp. 3 1 1059 0 species 1921421 33940 species 0 1174 1 Geobacillus thermodenitrificans species 0 1422 Geobacillus stearothermophilus 1 1582 4 4904 1505648 species group 0 1 978 Geobacillus lituanicus 169283 species 0 1 2277 Geobacillus thermoleovorans 33941 0 species species 0 33938 Geobacillus thermocatenulatus 990 1 1462 0 species 659 1 Geobacillus kaustophilus 997 1 Geobacillus subterraneus 129338 0 species 2642459 0 no rank 6 6271 0 species 550542 Geobacillus sp. Y412MC52 1 763 Geobacillus sp. WCH70 1 1827 species 0 471223 1233873 0 species 1 1131 Geobacillus sp. GHH01 691437 0 species 1 743 Geobacillus sp. C56-T3 species 0 581103 Geobacillus sp. Y4.1MC1 1092 1 species 0 544556 Geobacillus sp. Y412MC61 1 715 400634 genus 0 1 8886 5 54 Lysinibacillus species 0 1421 Lysinibacillus sphaericus 3809 1 2636778 no rank 0 1687 1 species 0 2072025 Lysinibacillus sp. YS11 1 1687 Lysinibacillus varians 1931 1 0 species 1145276 species 0 28031 Lysinibacillus fusiformis 1 1405 0 genus 2675234 5 10945 79880 species 0 3406 1 Bacillus clausii 2465 1 Bacillus lehensis 300825 species 0 1 1139 Bacillus halodurans 86665 species 0 1 1950 Bacillus pseudofirmus 79885 species 0 1 1985 Bacillus krulwichiae 199441 0 species genus 0 29331 2 Amphibacillus 1 2 2996 1449 0 species 2994 1 Amphibacillus xylanus genus 0 1329200 7 Fictibacillus 1 3 3664 255247 species 0 1631 1 Fictibacillus arsenicus 2026 1 Fictibacillus phosphorivorans 1221500 0 species 1 27 35153 232 Planococcaceae 186818 family 0 1 12711 12 174 Planococcus 1372 genus 0 species 0 1215089 Planococcus halocryophilus 1 998 Planococcus rifietoensis 1140 1 species 0 200991 1302659 0 species 1 461 Planococcus sp. L10.15 0 species 161360 Planococcus antarcticus 1051 1 1 567 Planococcus kocurii 1374 species 0 1038856 0 species 1 805 Planococcus plakortidis Planococcus maritimus 1 3211 0 species 192421 species 0 414778 Planococcus donghaensis 978 1 Planococcus faecalis 633 1 species 0 1598147 2 2693 no rank 0 2662419 1526927 species 0 1409 1 Planococcus sp. PAMC 21323 species 0 2058136 Planococcus sp. MB-3u-03 1 1284 genus 0 1569 44 Sporosarcina 1 8856 5 no rank 0 2647733 2 3778 1930764 0 species 1933 1 Sporosarcina sp. P33 1845 1 Sporosarcina sp. P37 1930546 species 0 Sporosarcina ureae 3605 1 species 0 1571 1476 0 species 1 1429 Sporosarcina psychrophila 5249 3 1 Solibacillus 16 648800 0 genus Solibacillus silvestris 1 2162 0 species 76853 3071 1 2637870 0 no rank Solibacillus sp. R5-41 1 3071 species 0 2048654 Kurthia 2 2 2474 1 0 genus 1649 2472 1 2644826 no rank 0 Kurthia sp. 11kri321 2472 1 0 species 1750719 Rummeliibacillus 1 2 2041 1 0 genus 648802 1 2040 Rummeliibacillus stabekisii 241244 species 0 157226 0 genus 3590 2 1 Jeotgalibacillus 12 1508404 0 species 3578 1 Jeotgalibacillus malaysiensis Sporolactobacillaceae 5 2 2862 1 0 family 186821 1 2857 no rank 0 663587 species 0 85683 [Bacillus] selenitireducens 2857 1 5569 Lactobacillales 1 166 633916 order 0 186826 1300 family 0 1 49 397680 4418 Streptococcaceae 1357 0 genus 5 10962 1 Lactococcus 55 1366 species 0 899 1 Lactococcus raffinolactis Lactococcus garvieae 3261 1 0 species 1363 1 756 Lactococcus piscium 1364 species 0 species 0 1358 Lactococcus lactis 1 5991 genus 0 1301 8761 Streptococcus 1 382300 43 1811193 species 0 2775 1 Streptococcus pantholopis 1 1370 Streptococcus pseudopneumoniae 257758 species 0 1040 1 Streptococcus halotolerans 1814128 0 species 0 no rank 2608887 7 10644 Streptococcus sp. 'group B' 1136 1 0 species 1319 0 species 1902136 Streptococcus sp. NPS 308 1 1580 Streptococcus sp. I-G2 1 1513 species 0 1156431 0 species 1759399 Streptococcus sp. A12 1 1733 0 species 1839799 Streptococcus sp. FDAARGOS_192 1 1211 2030 1 Streptococcus sp. I-P16 1156433 0 species species 0 712633 Streptococcus sp. oral taxon 431 1 1441 1 8291 Streptococcus lutetiensis 150055 0 species Streptococcus gordonii 1 3419 0 species 1302 1342 1 Streptococcus parasanguinis 1318 species 0 0 species group 671232 3 82137 2176 1 Streptococcus intermedius 1338 species 0 1 11669 Streptococcus constellatus 76860 0 species 68292 1 Streptococcus anginosus 1328 0 species Streptococcus pneumoniae 1 6092 0 species 1313 1600 1 Streptococcus uberis 1349 species 0 Streptococcus himalayensis 1 1333 species 0 1888195 Streptococcus acidominimus 2934 1 species 0 1326 1 2415 Streptococcus marmotae 1825069 0 species Streptococcus infantarius 9177 1 0 species 102684 28037 species 0 5848 1 Streptococcus mitis 59310 species 0 1138 1 Streptococcus macedonicus Streptococcus thermophilus 2793 1 0 species 1308 1 17639 Streptococcus pasteurianus 197614 species 0 400065 species 0 1 775 Streptococcus merionis 0 species 1311 Streptococcus agalactiae 128285 1 species 0 1335 Streptococcus equinus 1 1318 Streptococcus mutans 2346 1 species 0 1309 1348 0 species 1 1613 Streptococcus parauberis 1303 0 species 1 6000 Streptococcus oralis 1 682 Streptococcus pluranimalium 82348 0 species 0 species 1304 Streptococcus salivarius 4460 1 Streptococcus sanguinis 1918 1 species 0 1305 0 species group 119603 2 3276 Streptococcus equi 1 2187 species 0 1336 species 0 1334 Streptococcus dysgalactiae 1 1089 2836 1 Streptococcus gallolyticus 315405 0 species 0 species 1314 Streptococcus pyogenes 3127 1 1307 species 0 1 50859 Streptococcus suis species 0 45634 Streptococcus cristatus 1584 1 2473 1 Streptococcus iniae 1346 species 0 Enterococcaceae 87 111956 20 1 0 family 81852 genus 0 51668 5 Tetragenococcus 1 2 5437 Tetragenococcus halophilus 1 5432 0 species 51669 Vagococcus 46 2231 3 1 0 genus 2737 species 0 519472 Vagococcus teuberi 1101 1 1 1084 Vagococcus penaei 633807 0 species 1350 genus 0 1 102962 12 4462 Enterococcus 1224 1 Enterococcus mundtii 53346 species 0 3884 3 0 no rank 2608891 0 species 2060306 Enterococcus sp. FDAARGOS_163 919 1 1147 1 Enterococcus sp. CR-Ec1 2057791 0 species Enterococcus sp. FDAARGOS_375 1 1818 species 0 2060307 10608 1 Enterococcus faecalis 1351 species 0 1 2647 Enterococcus durans 53345 species 0 2005703 species 0 1 2100 Enterococcus wangshanyuanii 0 species 1354 Enterococcus hirae 1 2033 Enterococcus thailandicus 1 1051 species 0 417368 1352 species 0 73514 1 Enterococcus faecium Enterococcus casseliflavus 1 1439 0 species 37734 Melissococcus 6 1239 2 1 0 genus 33969 33970 0 species 1 1233 Melissococcus plutonius 263855 no rank 0 1 914 1 914 Lactobacillales bacterium 1993866 species 0 19 Leuconostocaceae 1 11942 18 family 0 81850 genus 0 1243 151 Leuconostoc 1 5275 9 136609 species 0 1 429 Leuconostoc kimchii 1 622 Leuconostoc citreum 33964 0 species 0 species 255248 Leuconostoc garlicum 305 1 Leuconostoc lactis 1 312 0 species 1246 1252 species 0 572 1 Leuconostoc carnosum 1245 species 0 1 1463 Leuconostoc mesenteroides 0 no rank 2685106 411 1 979982 0 species 411 1 Leuconostoc sp. C2 Leuconostoc gelidum 1010 1 species 0 1244 46254 0 genus 2 874 1 Oenococcus 2 872 1 Oenococcus oeni 1247 0 species 1 5774 6 16 Weissella 46255 genus 0 0 species 759620 Weissella ceti 517 1 species 0 137591 Weissella cibaria 1 3539 1 435 Weissella paramesenteroides 1249 0 species Weissella jogaejeotgali 490 1 species 0 1631871 Weissella koreensis 777 1 species 0 165096 186827 family 0 1 8745 8 9 Aerococcaceae 0 genus 1375 Aerococcus 156 8736 7 1 Aerococcus christensenii 1 2155 species 0 87541 0 species 51665 Aerococcus urinaeequi 1 1289 128944 species 0 920 1 Aerococcus urinaehominis Aerococcus urinae 2005 1 species 0 1376 1 1261 Aerococcus sanguinicola 119206 0 species 950 1 Aerococcus viridans 1377 species 0 0 family 186828 Carnobacteriaceae 12 9342 11 1 1 1645 2 3 Marinilactibacillus 191769 genus 0 no rank 0 2632303 1642 1 1642 1 Marinilactibacillus sp. 15R 1911586 0 species 24 Jeotgalibaca 1 2265 3 genus 0 1470540 Jeotgalibaca dankookensis 1 1287 0 species 708126 2621505 0 no rank 954 1 1903686 0 species 1 954 Jeotgalibaca sp. PTS2502 0 genus 2747 Carnobacterium 33 5420 5 1 species 0 2751 Carnobacterium maltaromaticum 1781 1 Carnobacterium inhibens 1435 1 0 species 147709 257487 no rank 0 2171 2 species 0 1564681 Carnobacterium sp. CP1 1 1109 208596 0 species 1 1062 Carnobacterium sp. 17-4 58 87768 1 Lactobacillaceae 374 33958 0 family 2767881 0 genus 2 1636 439 1 Lactobacillus sanfranciscensis 1625 0 species species 0 53444 Lactobacillus lindneri 1 1197 8212 6 genus 0 2767879 1612 species 0 1380 1 Lactobacillus farciminis 1 1339 Lactobacillus heilongjiangensis 1074467 species 0 1 1602 Lactobacillus ginsenosidimutans 1007676 species 0 Lactobacillus alimentarius 983 1 0 species 1602 1 1281 Lactobacillus allii 1847728 0 species 1627 1 Lactobacillus crustorum 392416 0 species 2767887 0 genus 4 11595 Lactobacillus ruminis 3814 1 species 0 1623 2222 1 Lactobacillus agilis 1601 0 species 1150 1 Lactobacillus acidipiscis 89059 species 0 1 4409 Lactobacillus salivarius 1624 species 0 2767886 genus 0 3 2046 species 0 637971 Lactobacillus koreensis 1 710 1580 0 species 1 823 Lactobacillus brevis 0 species 267363 Lactobacillus zymae 513 1 28860 16 1 Lactobacillus 3097 1578 0 genus 0 species 1587 Lactobacillus helveticus 1 1672 Lactobacillus delbrueckii 1 4210 species 0 1584 Lactobacillus acidophilus 1 994 species 0 1579 Lactobacillus johnsonii 4737 1 0 species 33959 1596 species 0 2193 1 Lactobacillus gasseri 2099 4 0 no rank 2620435 2108362 species 0 419 1 Lactobacillus sp. D1501 2099789 species 0 548 1 Lactobacillus sp. CBA3606 432 1 Lactobacillus sp. CBA3605 2099788 species 0 1545702 0 species 700 1 Lactobacillus sp. wkB8 267818 species 0 1 720 Lactobacillus kefiranofaciens 0 species 109790 Lactobacillus jensenii 1558 1 1 3938 Lactobacillus amylovorus 1604 0 species 1 1356 Lactobacillus amylolyticus 83683 species 0 1600 0 species 691 1 Lactobacillus acetotolerans 0 species 52242 Lactobacillus gallinarum 1 1595 1884 2 2767889 genus 0 species 0 1610 Lactobacillus coryniformis 1 969 Lactobacillus backii 1 915 0 species 375175 genus 0 2767842 6126 3 1590 0 species 4563 1 Lactobacillus plantarum 1589 0 species 909 1 Lactobacillus pentosus species 0 60520 Lactobacillus paraplantarum 1 654 2767892 genus 0 753 1 0 species 240427 Lactobacillus paracollinoides 1 753 genus 0 2742598 4751 3 1 1651 Lactobacillus mucosae 97478 species 0 species 0 1598 Lactobacillus reuteri 1 1876 species 0 1613 Lactobacillus fermentum 1 1224 3710 1 genus 0 2767876 1603 0 species 1 3710 Lactobacillus amylophilus 670 1 2767890 0 genus 0 species 1193095 Lactobacillus hokkaidonensis 1 670 genus 0 1253 23 Pediococcus 1 6 5716 1 1059 Pediococcus damnosus 51663 0 species 1255 0 species 1396 1 Pediococcus pentosaceus 683 1 Pediococcus inopinatus 114090 species 0 1 1417 1670797 species group 0 Pediococcus acidilactici 1 1417 species 0 1254 187452 0 species 1 1138 Pediococcus claussenii 3 2330 genus 0 2767893 0 species 1581 Lactobacillus buchneri 1 679 1138822 0 species 1131 1 Lactobacillus curieae 152331 0 species 520 1 Lactobacillus parabuchneri 2759736 0 genus 3 5019 0 species 1582 Lactobacillus casei 1901 1 1 1483 Lactobacillus paracasei 1597 species 0 47715 species 0 1 1635 Lactobacillus rhamnosus 1 793 2767877 genus 0 793 1 Lactobacillus kunkeei 148814 0 species 2 3293 genus 0 2767885 1 1857 Lactobacillus sakei 1599 0 species 1436 1 Lactobacillus curvatus 28038 species 0 0 class 1737404 Tissierellia 58 19 40378 1 2 2140 no rank 0 1737407 29 Ezakiella 1 2 2140 genus 0 1582879 1852374 0 species 1 2111 Ezakiella massiliensis 0 order 1737405 Tissierellales 696 38180 16 1 1570339 0 family 34805 12 1 Peptoniphilaceae 6587 150022 genus 0 1 2 4970 18 Finegoldia 1260 species 0 1 4952 Finegoldia magna 3873 2 1 Parvimonas 24 543311 0 genus Parvimonas micra 3849 1 species 0 33033 Anaerococcus 4 7031 3 1 0 genus 165779 1 3192 Anaerococcus mediterraneensis 1870984 0 species 1 3835 Anaerococcus prevotii 33034 0 species Peptoniphilus 12 2844 2 1 0 genus 162289 2832 1 2637196 0 no rank species 0 1912856 Peptoniphilus sp. ING2-D1G 2832 1 1161127 genus 0 1 9500 2 8 Murdochiella 1852373 0 species 9492 1 Murdochiella vaginalis family 0 2042895 17 Gottschalkiaceae 1 3 2679 1505664 genus 0 1 2 2662 4 Gottschalkia 1556 0 species 2658 1 Gottschalkia acidurici class 0 526524 5 Erysipelotrichia 1 54809 11 order 0 526525 56 Erysipelotrichales 1 54804 10 0 family 128827 Erysipelotrichaceae 157 54748 9 1 1 10676 2 37 Turicibacter 191303 genus 0 10639 1 0 no rank 2638206 Turicibacter sp. H121 1 10639 species 0 1712675 no rank 0 544447 1 31088 Erysipelotrichaceae bacterium I46 31088 1 species 0 1834207 genus 0 1729679 18 Faecalibaculum 1 2 8703 Faecalibaculum rodentium 1 8685 0 species 1702221 0 genus 1647 Erysipelothrix 151 4124 3 1 1648 species 0 1935 1 Erysipelothrix rhusiopathiae Erysipelothrix larvae 2038 1 0 species 1514105 phylum 0 67819 1591 5 0 class 1663419 Fimbriimonadia 5 5 1591 1 0 order 1663425 Fimbriimonadales 24 1586 4 1 1663426 family 0 1 1562 3 17 Fimbriimonadaceae 4 Fimbriimonas 1 1545 2 genus 0 1005038 1 1541 Fimbriimonas ginsengisoli 1005039 species 0 58 68774 phylum 0 203691 68774 58 1 Spirochaetia 175 203692 0 class 1643686 order 0 1 7 11573 1 Brachyspirales 0 family 143786 Brachyspiraceae 135 6 11572 1 163 Brachyspira 1 11437 5 genus 0 29521 1910 1 Brachyspira intermedia 84377 species 0 2139 1 Brachyspira murdochii 84378 0 species 0 species 159 Brachyspira hyodysenteriae 1 2135 Brachyspira pilosicoli 5090 1 species 0 52584 Spirochaetales 825 42 51681 1 0 order 136 1 43660 24 526 Spirochaetaceae 137 family 0 0 genus 157 Treponema 862 12 29648 1 215591 0 species 1 1565 Treponema caldarium Treponema pallidum 1 126 0 species 160 0 species 158 Treponema denticola 1 2372 0 species 167 Treponema succinifaciens 9026 1 2071 1 Treponema primitia 88058 0 species Treponema paraluiscuniculi 115 1 species 0 53435 1 2310 Treponema azotonutricium 150829 species 0 2628 1 Treponema brennaborense 81028 species 0 1368 1 Treponema pedis 409322 species 0 1 3148 0 no rank 2638727 Treponema sp. OMZ 838 3148 1 species 0 1539298 species 0 221027 Treponema putidum 4057 1 2 Sediminispirochaeta 1 2658 2 genus 0 1911556 Sediminispirochaeta smaragdinae 1 2656 species 0 55206 399320 genus 0 1 5705 4 20 Sphaerochaeta species 0 273376 Sphaerochaeta coccoides 1902 1 0 species 1131707 Sphaerochaeta pleomorpha 1 1242 1 2541 Sphaerochaeta globosa 1131703 0 species 3621 3 1 Spirochaeta 9 146 0 genus 0 species 46355 Spirochaeta africana 1414 1 species 0 154 Spirochaeta thermophila 1 2198 1616789 genus 0 1 2 1502 1 Salinispira 1501 1 Salinispira pacifica 1307761 0 species 1643685 0 family 7196 17 1 Borreliaceae 4 199 Borreliella 1 2928 8 genus 0 64895 0 species 664662 Borreliella bavariensis 328 1 Borreliella afzelii 569 1 species 0 29518 species 0 64897 Borreliella bissettii 1 260 0 species 29519 Borreliella garinii 1 759 306 1 Borreliella burgdorferi 139 species 0 species 0 1674146 Borrelia mayonii 1 243 Borreliella valaisiana 1 264 species 0 62088 4264 8 1 Borrelia 24 138 0 genus 1169 1 Borrelia anserina 143 0 species Borrelia duttonii 1 444 0 species 40834 0 species 141 Borrelia parkeri 1 523 142 0 species 443 1 Borrelia turicatae 659 1 Borrelia miyamotoi 47466 species 0 0 species 44449 Borrelia recurrentis 1 429 1 573 Borrelia hermsii 140 species 0 8 5345 order 0 1643688 170 family 0 1 5345 8 10 Leptospiraceae 808 1 0 genus 338321 0 species 29510 Turneriella parva 1 808 genus 0 171 8 Leptospira 1 6 4527 0 species 28452 Leptospira alstonii 852 1 0 species 28183 Leptospira santarosai 654 1 1 1054 Leptospira borgpetersenii 174 0 species species 0 172 Leptospira biflexa 448 1 173 0 species 1 1511 Leptospira interrogans 44 22866 0 phylum 200918 22866 44 1 Thermotogae 19 188708 0 class order 0 1643947 8 Petrotogales 1 8 5414 1643949 family 0 5406 7 57 Marinitoga 1 3 4346 genus 0 160798 0 no rank 2640159 2339 1 Marinitoga sp. 1137 1 2339 0 species 1545835 Marinitoga piezophila 1950 1 species 0 149715 2 595 1 Defluviitoga 1 1511648 0 genus 0 species 1006576 Defluviitoga tunisiensis 594 1 28236 genus 0 1 465 2 84 Petrotoga species 0 69499 Petrotoga mobilis 1 381 2419 0 order 28 15872 1 Thermotogales 6 0 family 188709 Thermotogaceae 25 9549 17 1 Thermotoga 325 6514 11 1 0 genus 2335 Thermotoga naphthophila 771 1 0 species 93930 639 1 Thermotoga caldifontis 1508419 0 species Thermotoga profunda 482 1 0 species 1508420 species 0 2336 Thermotoga maritima 591 1 445 1 Thermotoga neapolitana 2337 species 0 1 772 Thermotoga petrophila 93929 0 species 4 2489 no rank 0 2631113 1157947 0 species 725 1 Thermotoga sp. Cell2 species 0 126740 Thermotoga sp. RQ2 671 1 species 0 126738 Thermotoga sp. RQ7 1 409 species 0 1157948 Thermotoga sp. 2812B 1 684 genus 0 1643951 45 Pseudothermotoga 1 5 3010 0 species 119394 Pseudothermotoga thermarum 596 1 949 1 Pseudothermotoga lettingae 177758 species 0 Pseudothermotoga elfii 1 931 0 species 38322 Pseudothermotoga hypogea 1 489 0 species 57487 1643950 family 0 1 6317 10 13 Fervidobacteriaceae genus 0 2422 29 Fervidobacterium 1 2261 4 649 1 Fervidobacterium islandicum 2423 0 species 0 species 93466 Fervidobacterium pennivorans 1 732 Fervidobacterium nodosum 1 851 0 species 2424 2420 0 genus 5 4043 1 Thermosipho 5 1 884 Thermosipho melanesiensis 46541 species 0 Thermosipho africanus 1161 1 species 0 2421 1993 2 2676525 0 no rank Thermosipho sp. 1063 1 988 0 species 1462747 Thermosipho sp. 1070 1005 1 0 species 1437364 1 1561 7 6 Kosmotogales 1643946 order 0 Kosmotogaceae 41 1555 6 1 0 family 1643948 1184396 genus 0 1 2 506 40 Mesotoga 1184387 0 species 466 1 Mesotoga prima 651456 0 genus 1008 3 1 Kosmotoga 4 Kosmotoga olearia 547 1 species 0 651457 1 457 Kosmotoga pacifica 1330330 species 0 378 8826144 clade 0 1783270 8815151 363 68336 clade 0 0 phylum 1134404 3573 7 Ignavibacteria 11 3573 7 1 0 class 795747 2 Ignavibacteriales 1 6 3562 order 0 795748 0 family 1334117 Melioribacteraceae 14 3 1786 1 1772 2 1 Melioribacter 2 1134403 0 genus Melioribacter roseus 1 1770 0 species 1134405 0 family 795749 Ignavibacteriaceae 2 1774 2 1 genus 0 795750 1772 1 0 species 591197 Ignavibacterium album 1 1772 22 20629 1090 phylum 0 22 20629 1 Chlorobia 214 191410 0 class 191411 0 order 20415 21 1 Chlorobiales 163 Chlorobiaceae 155 20 20252 1 0 family 191412 274493 no rank 0 8 7670 3 2724 1 Pelodictyon 33 1099 0 genus 1100 0 species 1 1690 Pelodictyon luteolum species 0 34090 Pelodictyon phaeoclathratiforme 1 1001 1 5 4946 23 Chlorobium 1091 genus 0 species 0 1094 Chlorobium phaeovibrioides 1251 1 1 922 Chlorobium limicola 1092 0 species 1 1878 Chlorobium phaeobacteroides 1096 0 species Chlorobium chlorochromatii 1 872 0 species 337090 0 genus 100715 Chloroherpeton 3 865 2 1 100716 0 species 862 1 Chloroherpeton thalassium 25 Prosthecochloris 1 5097 5 genus 0 1101 0 no rank 2632826 3437 3 281093 0 species 1440 1 Prosthecochloris sp. GSB1 species 0 1974213 Prosthecochloris sp. HL-130-GSB 1 1193 0 species 1868325 Prosthecochloris sp. CIB 2401 804 1 0 species 1102 Prosthecochloris aestuarii 1635 1 6465 4 1 Chlorobaculum 69 256319 0 genus Chlorobaculum tepidum 1968 1 0 species 1097 1 2512 Chlorobaculum limnaeum 274537 0 species 274539 0 species 1 1916 Chlorobaculum parvum Bacteroidetes 86 334 8790949 1 0 phylum 976 Cytophagia 116 71792 59 1 0 class 768503 768507 0 order 71676 58 1 Cytophagales 286 Cyclobacteriaceae 12 7115 10 1 0 family 563798 1 Echinicola 1 3021 2 genus 0 390846 species 0 390884 Echinicola vietnamensis 3020 1 1 2 1014 19 Belliella 232244 genus 0 Belliella baltica 1 995 0 species 232259 246875 0 genus 2 860 1 Algoriphagus 6 854 1 Algoriphagus sp. M8-2 1727163 0 species 3 2208 1 Cyclobacterium 10 68288 0 genus 0 species 104 Cyclobacterium marinum 1 1105 species 0 320787 Cyclobacterium amurskyense 1093 1 1853232 family 0 1 16 36682 117 Hymenobacteraceae 6508 4 1 Rufibacter 46 1379908 0 genus Rufibacter tibetensis 2561 1 0 species 512763 3901 2 0 no rank 2639626 1 2267 Rufibacter sp. DG15C 1379909 0 species Rufibacter sp. DG31D 1634 1 species 0 1379910 genus 0 89966 259 Hymenobacter 1 25581 8 3179 1 Hymenobacter swuensis 1446467 species 0 1411621 0 species 4076 1 Hymenobacter sedentarius no rank 0 2615202 18067 5 Hymenobacter sp. DG25A 1 2366 species 0 1385663 1385664 species 0 3554 1 Hymenobacter sp. DG25B Hymenobacter sp. PAMC 26628 4262 1 species 0 1484118 species 0 1356852 Hymenobacter sp. APR13 1 4121 1 3764 Hymenobacter sp. PAMC 26554 1484116 0 species Pontibacter 8 3 4476 1 0 genus 323449 1 2651 Pontibacter akesuensis 388950 species 0 0 species 400092 Pontibacter korlensis 1 1817 1 1716 2 7 Bernardetiaceae 1937968 family 0 1 1709 1937972 genus 0 Bernardetia litoralis 1709 1 0 species 999 1 581 3 8 Amoebophilaceae 1501348 family 0 genus 0 273135 1 234 0 no rank 2641185 1 234 249402 species 0 1 234 Cardinium endosymbiont of Encarsia pergandiella 339 1 0 genus 281119 species 0 281120 Candidatus Amoebophilus asiaticus 339 1 Persicobacteraceae 3 3 2093 1 0 family 1853234 genus 0 59740 1 Persicobacter 1 2090 2 0 no rank 2664020 1 2089 1085624 0 species 2089 1 Persicobacter sp. JZB09 2762301 0 family 2 956 869806 0 genus 956 2 1 Marivirga 18 1006 0 species 1 938 Marivirga tractuosa 89373 family 0 1 17 17551 82 Cytophagaceae 1 7914 6 28 Spirosoma 107 genus 0 Spirosoma montaniterrae 2204 1 species 0 1178516 1 1198 Spirosoma radiotolerans 1379870 0 species 1211326 0 species 1244 1 Spirosoma aerolatum Spirosoma sp. HA7 1 1530 species 0 2057025 564064 species 0 1 1710 Spirosoma rigui 120831 genus 0 1 2841 2 9 Dyadobacter 2832 1 Dyadobacter fermentans 94254 species 0 Leadbetterella 10 1593 2 1 0 genus 319458 species 0 316068 Leadbetterella byssophila 1583 1 1 2 1531 37 Cytophaga 978 genus 0 Cytophaga hutchinsonii 1 1494 0 species 985 1 2 1607 8 Fibrella 861914 genus 0 1 1599 2620963 no rank 0 Fibrella sp. ES10-3-2-2 1 1599 0 species 1834519 1 2 1983 3 Runella 105 genus 0 species 0 106 Runella slithyformis 1 1980 family 0 200667 8 Flammeovirgaceae 1 4696 4 2175 2 1 Flammeovirga 3 59739 0 genus 1 2172 2637820 no rank 0 0 species 1191459 Flammeovirga sp. MY04 1 2172 2513 1 340671 no rank 0 0 species 1257021 Flammeovirgaceae bacterium 311 1 2513 Bacteroidetes Order II. Incertae sedis 116 7 9166 1 0 order 1100069 563843 0 family 6 9050 1 Rhodothermaceae 134 146918 0 genus 2 1440 1 Salinibacter 9 1 1431 Salinibacter ruber 146919 0 species 1196022 0 no rank 3584 1 Rhodothermaceae bacterium RA 1 3584 0 species 1779382 29548 0 genus 3892 2 1 Rhodothermus 41 29549 species 0 3851 1 Rhodothermus marinus 1 205452 147 58 Flavobacteriia 117743 class 0 0 order 200644 Flavobacteriales 153 205394 146 1 family 0 246874 Cryomorphaceae 1 1 1333713 0 family 2 1255 2 1255 1 Owenweeksia 2 267986 0 genus 0 species 253245 Owenweeksia hongkongensis 1 1253 1 104 114779 3074 Flavobacteriaceae 49546 family 0 0 genus 76831 Myroides 96 15247 5 1 76832 species 0 12052 1 Myroides odoratimimus no rank 0 2642485 2235 2 1 1137 Myroides sp. ZB35 1458492 0 species Myroides sp. A21 1098 1 0 species 1583100 Myroides profundi 864 1 0 species 480520 1 873 genus 0 1649495 1 873 2622645 no rank 0 873 1 Seonamhaeicola sp. S2-3 1936081 species 0 0 genus 326319 Dokdonia 6 2009 4 1 no rank 0 2615033 2 1326 983548 0 species 1 872 Dokdonia sp. 4H-3-7-5 0 species 313590 Dokdonia sp. MED134 1 454 326320 0 species 677 1 Dokdonia donghaensis 0 genus 83612 Psychroflexus 1 2 702 1 57029 species 0 701 1 Psychroflexus torquis 0 genus 417127 Zunongwangia 12 1575 2 1 Zunongwangia profunda 1563 1 species 0 398743 393005 0 genus 1038 1 2069432 0 species 1038 1 Tamlana sp. UJ94 2700084 0 genus 1 1558 species 0 1850246 Lutibacter sp. LPB0138 1 1558 261827 0 genus 1 859 species 0 1736674 Algibacter alginicilyticus 1 859 genus 0 292691 23 Gramella 1 4657 5 1203 1 Gramella flava 1486245 species 0 0 species 1913577 Gramella sp. LPB0144 1 746 2126553 0 species 1 1759 Gramella sp. SH35 Gramella forsetii 1 926 species 0 411153 1 3 1986 3 Muricauda 111500 genus 0 Muricauda ruestringensis 1 1135 species 0 111501 species 0 516051 Muricauda lutaonensis 1 848 Winogradskyella 1 3 1954 1 0 genus 286104 1953 2 no rank 0 2615021 1936080 species 0 952 1 Winogradskyella sp. J14-2 Winogradskyella sp. PG-2 1 1001 0 species 754409 252306 0 genus 2 1245 1 Robiginitalea 2 0 species 252307 Robiginitalea biformata 1 1243 Siansivirga 23 2 977 1 0 genus 1204360 0 species 762954 Siansivirga zeaxanthinifaciens 954 1 0 genus 1016 Capnocytophaga 101 22384 15 1 0 species 1017 Capnocytophaga gingivalis 1 1133 1 1388 Capnocytophaga stomatis 1848904 0 species 1019 0 species 1 5199 Capnocytophaga sputigena Capnocytophaga cynodegmi 1289 1 species 0 28189 45243 0 species 1 1227 Capnocytophaga haemolytica 1 1191 Capnocytophaga ochracea 1018 species 0 Capnocytophaga canimorsus 1 2123 0 species 28188 6 7270 2640652 0 no rank Capnocytophaga sp. oral taxon 878 1174 1 species 0 1316596 1641 1 Capnocytophaga sp. oral taxon 864 1316593 species 0 Capnocytophaga sp. H4358 1 780 0 species 1945658 1 1285 Capnocytophaga sp. oral taxon 323 1705617 species 0 species 0 1945657 Capnocytophaga sp. H2931 879 1 209053 species 0 1 1511 Capnocytophaga sp. ChDC OS43 Capnocytophaga leadbetteri 1463 1 0 species 327575 Lacinutrix 4 4 2931 1 0 genus 291183 1003 1 Lacinutrix venerupis 1486034 species 0 no rank 0 2647285 1924 2 2057808 0 species 1 665 Lacinutrix sp. Bg11-31 983544 species 0 1 1259 Lacinutrix sp. 5H-3-7-4 1518147 genus 0 979 1 1790137 0 species 1 979 Wenyingzhuangia fucanilytica Tenacibaculum 87 5 4400 1 0 genus 104267 584609 species 0 980 1 Tenacibaculum jejuense 1850252 species 0 1468 1 Tenacibaculum todarodis 620 1 Tenacibaculum maritimum 107401 0 species 669041 0 species 1245 1 Tenacibaculum dicentrarchi genus 0 153265 1561 1 1561 1 Aequorivita sublithincola 101385 species 0 1 880 1176327 genus 0 2636237 no rank 0 1 880 Aureitalea sp. RR4-38 1 880 0 species 2094025 0 genus 252356 Maribacter 6 5 3539 1 2615042 0 no rank 2681 3 0 species 1644130 Maribacter sp. 1_2014MBL_MicDiv 1 775 Maribacter sp. HTCC2170 1 964 0 species 313603 1836467 species 0 942 1 Maribacter sp. T28 1178778 0 species 852 1 Maribacter cobaltidurans 363408 0 genus 3368 5 1 Nonlabens 6 1 677 Nonlabens sediminis 319236 0 species 328515 0 species 978 1 Nonlabens dokdonensis 1707 2 2615035 0 no rank 1 974 Nonlabens sp. MIC269 1476901 species 0 species 0 2058134 Nonlabens sp. MB-3u-79 733 1 178469 genus 0 1471 1 616991 species 0 1471 1 Arenibacter algicola 216431 0 genus 851 2 1 Croceibacter 2 Croceibacter atlanticus 1 849 0 species 313588 389486 genus 0 601 1 1 601 0 no rank 2648869 species 0 1453352 Sediminicola sp. YIK13 601 1 104264 0 genus 3705 4 1 Cellulophaga 3 species 0 979 Cellulophaga lytica 1423 1 59600 species 0 1 859 Cellulophaga algicola 1 1420 Cellulophaga baltica 76594 species 0 Flavobacterium 32 9 13340 1 0 genus 237 1332 1 Flavobacterium psychrophilum 96345 0 species Flavobacterium commune 1 1293 0 species 1306519 986 species 0 4264 1 Flavobacterium johnsoniae 1332 1 Flavobacterium gilvum 1492737 0 species Flavobacterium indicum 1059 1 species 0 312277 0 species 996 Flavobacterium columnare 1 1940 1763534 0 species 816 1 Flavobacterium crassostreae species 0 55197 Flavobacterium branchiophilum 1 1272 1030 1 358023 0 genus 1622118 0 species 1 1030 Lutibacter profundi 1209327 genus 0 1293 1 Flavivirga eckloniae 1 1293 0 species 1803846 0 genus 112040 1 2105 Zobellia galactanivorans 1 2105 0 species 63186 Formosa 26 3 1150 1 0 genus 225842 no rank 0 2644710 1124 2 0 species 1336794 Formosa sp. Hel1_33_131 1 672 1336795 species 0 452 1 Formosa sp. Hel3_A1_48 1 6 6730 8 Polaribacter 52959 genus 0 no rank 0 196858 3670 3 Polaribacter sp. BM10 1 1324 0 species 1529069 species 0 313598 Polaribacter sp. MED152 1 1230 species 0 2058137 Polaribacter sp. ALD11 1116 1 species 0 1774273 Polaribacter vadi 1333 1 996801 species 0 1 1719 Polaribacter reichenbachii 336276 genus 0 1 623 1 623 no rank 0 2615019 2058135 species 0 1 623 Olleya sp. Bg11-27 Salegentibacter 88 1233 2 1 0 genus 143222 1 1145 0 no rank 2633436 1729720 0 species 1 1145 Salegentibacter sp. T436 2851 2 0 no rank 61432 1381 1 Flavobacteriaceae bacterium UJ101 1150389 0 species species 0 531844 Flavobacteriaceae bacterium 3519-10 1 1470 family 0 1755828 2 338 0 genus 1755829 Ichthyobacterium 1 2 338 1 Ichthyobacterium seriolicida 337 1 0 species 242600 39782 family 0 9 2053 Blattabacterium 81 2053 9 1 0 genus 34098 1380 6 2647581 0 no rank Blattabacterium sp. (Nauphoeta cinerea) 1 272 0 species 1316444 Blattabacterium sp. (Blaberus giganteus) 143 1 0 species 1186051 0 species 367806 Blattabacterium sp. (Blatta orientalis) 1 148 Blattabacterium sp. (Blattella germanica) 410 1 0 species 624186 203 1 Blattabacterium sp. (Periplaneta americana) 367488 species 0 204 1 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species 0 1 219 Blattabacterium cuenoti 1653831 species 0 0 species 164514 Blattabacterium punctulatus 373 1 21 84833 family 0 2762318 27301 10 0 no rank 2782232 2782228 0 genus 8495 1 0 species 536441 Chryseobacterium taklimakanense 8495 1 1 9 18806 45 Chryseobacterium 59732 genus 0 Chryseobacterium piperi 1669 1 species 0 558152 species 0 1685010 Chryseobacterium glaciei 1570 1 no rank 0 2593645 3 6203 0 species 2015076 Chryseobacterium sp. T16E-39 1 2350 0 species 1721091 Chryseobacterium sp. IHB B 17019 2062 1 Chryseobacterium sp. StRB126 1 1791 species 0 878220 Chryseobacterium gallinarum 1 3723 species 0 1324352 Chryseobacterium camelliae 1761 1 species 0 1265445 3835 1 Chryseobacterium indologenes 253 0 species 308865 0 genus 11253 6 1 Elizabethkingia 86 0 species 172045 Elizabethkingia miricola 1 2126 0 species 1756150 Elizabethkingia genomosp. 4 1135 1 Elizabethkingia genomosp. 3 1 1397 0 species 1756149 Elizabethkingia anophelis 3949 1 species 0 1117645 Elizabethkingia meningoseptica 1 2560 0 species 238 0 genus 34084 Riemerella 835 2 4490 1 1 3655 Riemerella anatipestifer 34085 species 0 692 1 0 genus 1013 Weeksella virosa 692 1 species 0 1014 73 Ornithobacterium 1 41097 2 genus 0 28250 0 species 28251 Ornithobacterium rhinotracheale 41024 1 1853230 0 family 3 1163 1 Crocinitomicaceae 4 332102 genus 0 1 1159 2 38 Fluviicola Fluviicola taffensis 1 1121 0 species 191579 313602 0 no rank 819 3 1 145 1940138 0 genus 1415657 0 species 1 145 Candidatus Walczuchella monophlebidarum 22 Candidatus Sulcia 1 674 2 genus 0 336809 Candidatus Sulcia muelleri 1 652 species 0 336810 1 15140 15 47 Chitinophagia 1853228 class 0 14 15093 1 Chitinophagales 42 1853229 0 order Chitinophagaceae 95 13 15051 1 0 family 563835 649460 0 genus 2 1864 1 Filimonas 3 species 0 477680 Filimonas lacunae 1 1861 0 genus 1769012 Arachidicoccus 2 2 1293 1 2636138 0 no rank 1 1291 species 0 1850526 Arachidicoccus sp. BS20 1291 1 920 1 398041 0 genus Flavisolibacter tropicus 1 920 0 species 1492898 379899 0 genus 3 3719 1 Niabella 23 446683 species 0 1 1884 Niabella soli 1176587 0 species 1812 1 Niabella ginsenosidivorans 2169 1 354354 0 genus 0 species 354356 Niastella koreensis 1 2169 4 Chitinophaga 1 3 4991 genus 0 79328 Chitinophaga pinensis 3542 1 0 species 79329 Chitinophagaceae bacterium 13 1445 1 0 species 2029983 73 8457607 1 Bacteroidia 194 200643 0 class Marinilabiliales 15 12 9804 1 0 order 1970189 family 0 1573805 7 Marinifilaceae 1 2543 2 2536 1 2060722 0 genus species 0 1717717 Marinifilaceae bacterium SPP2 2536 1 4145 3 1 Prolixibacteraceae 20 1471398 0 family 2 4125 1 Draconibacterium 36 1471399 0 genus 1168034 0 species 1 4089 Draconibacterium orientale family 0 1970190 3 Salinivirgaceae 1 3 1183 2 1180 1 Salinivirga 5 1970191 0 genus 1 1175 Salinivirga cyanobacteriivorans 1307839 species 0 0 family 558415 Marinilabiliaceae 2 3 1918 1 1193324 0 genus 2 1916 1 Alkalitalea 3 889453 species 0 1913 1 Alkalitalea saponilacus 171549 0 order 8447609 60 1 Bacteroidales 2948 Barnesiellaceae 15 173909 3 1 0 family 2005519 1 173894 2 117 Barnesiella 397864 genus 0 1 173777 Barnesiella viscericola 397865 0 species 171550 0 family 5 243721 1 Rikenellaceae 21 0 genus 1611681 Mucinivorans 40 3893 2 1 Mucinivorans hirudinis 1 3853 species 0 1433126 239759 0 genus 239807 2 1 Alistipes 47 239760 1 Alistipes finegoldii 214856 0 species 171551 family 0 1 19357 4 54 Porphyromonadaceae 836 0 genus 19303 3 1 Porphyromonas 16 Porphyromonas gingivalis 1 16385 species 0 837 Porphyromonas asaccharolytica 2902 1 0 species 28123 5024 2 2005523 0 family genus 0 346096 91 Paludibacter 1 5024 2 185300 species 0 1 4933 Paludibacter propionicigenes 333046 0 no rank 2922073 5 1 1652 2 1 Candidatus Azobacteroides 511434 genus 0 511435 0 species 1651 1 Candidatus Azobacteroides pseudotrichonymphae 909656 0 genus 3 2920421 Bacteroides salanitronis 1 123266 0 species 376805 821 0 species 1546423 1 Bacteroides vulgatus species 0 357276 Bacteroides dorei 1250732 1 1853231 family 0 1 3 136479 2 Odoribacteraceae 283168 genus 0 1 2 136477 7 Odoribacter 0 species 28118 Odoribacter splanchnicus 136470 1 1 2330 185291 0 no rank 1400053 species 0 2330 1 Bacteroidales bacterium CF Tannerellaceae 123 615045 7 1 0 family 2005525 596106 3 1 Parabacteroides 165 375288 0 genus 2649774 no rank 0 412802 1 species 0 2025876 Parabacteroides sp. CT06 1 412802 823 species 0 183139 1 Parabacteroides distasonis 1 3 18816 33 Tannerella 195950 genus 0 1 7877 no rank 0 2620507 0 species 712710 Tannerella sp. oral taxon HOT-286 7877 1 0 species 28112 Tannerella forsythia 10906 1 37 Prevotellaceae 1 227348 11 family 0 171552 273 Prevotella 1 10 227311 genus 0 838 3898 1 Prevotella enoeca 76123 0 species 0 species 52227 Prevotella dentalis 11384 1 1 172286 Prevotella intermedia 28131 0 species 2580 1 no rank 0 2638335 652716 species 0 2580 1 Prevotella sp. oral taxon 299 28132 0 species 1 9009 Prevotella melaninogenica 839 species 0 8859 1 Prevotella ruminicola species 0 28129 Prevotella denticola 7872 1 1177574 species 0 1 6087 Prevotella jejuni 589436 0 species 1 5063 Prevotella fusca 2005520 family 0 1 18084 7 2 Dysgonamonadaceae 294702 0 genus 6214 2 1 Proteiniphilum 41 6173 1 Proteiniphilum saccharofermentans 1642647 species 0 7030 2 1 Petrimonas 3 307628 0 genus 1 7027 Petrimonas mucosa 1642646 0 species 1784836 genus 0 1 2 4838 32 Fermentimonas 1562970 0 species 4806 1 Fermentimonas caenicola 1 11 4081291 85 Bacteroidaceae 815 family 0 816 0 genus 4081206 10 1 Bacteroides 102390 species 0 817 Bacteroides fragilis 1 539763 149146 1 Bacteroides zoogleoformans 28119 0 species 1 193532 Bacteroides heparinolyticus 28113 species 0 28116 0 species 1 289695 Bacteroides ovatus species 0 818 Bacteroides thetaiotaomicron 889935 1 1 113684 Bacteroides caccae 47678 species 0 0 species 1796613 Bacteroides caecimuris 352291 1 0 species 290053 Bacteroides helcogenes 243970 1 246787 species 0 1 1206800 Bacteroides cellulosilyticus 74 Sphingobacteriia 1 28352 24 class 0 117747 58 Sphingobacteriales 1 28278 23 order 0 200666 Sphingobacteriaceae 107 22 28220 1 0 family 84566 1 1973 0 no rank 84568 1 1973 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 0 species Pedobacter 64 6 9150 1 0 genus 84567 Pedobacter heparinus 1 1805 species 0 984 0 no rank 2628915 1990 1 1990 1 Pedobacter sp. PACM 27299 1727164 species 0 species 0 430522 Pedobacter steynii 1 2182 363852 species 0 1 1622 Pedobacter ginsengisoli 1487 1 Pedobacter cryoconitis 188932 0 species 1649482 genus 0 1 2098 2 22 Pseudopedobacter 0 species 151895 Pseudopedobacter saltans 1 2076 2 1921 1 Solitalea 15 929509 0 genus 0 species 995 Solitalea canadensis 1 1906 7781 6 1 Sphingobacterium 28 28453 0 genus 2609468 0 no rank 6541 4 1637 1 Sphingobacterium sp. G1-14 2003121 0 species 743722 0 species 1 1444 Sphingobacterium sp. 21 0 species 1538644 Sphingobacterium sp. ML3W 1520 1 1940 1 Sphingobacterium sp. B29 1933220 0 species 1212 1 Sphingobacterium mizutaii 1010 0 species 0 genus 423349 Mucilaginibacter 29 4 5190 1 1966 1 0 no rank 2617802 Mucilaginibacter sp. PAMC 26640 1 1966 species 0 1300914 1598 1 Mucilaginibacter sp. BJC16-A31 1234841 species 0 1 1597 Mucilaginibacter gotjawali 1550579 0 species 7 Saprospiria 1 3354 8 class 0 1937959 Saprospirales 5 7 3347 1 0 order 1936988 89374 0 family 943 3 1 Saprospiraceae 3 940 2 1 Saprospira 2 1007 0 genus species 0 1008 Saprospira grandis 938 1 1 2399 3 2 Haliscomenobacteraceae 1937961 family 0 2349 genus 0 1 2397 2 4 Haliscomenobacter 1 2393 Haliscomenobacter hydrossis 2350 species 0 5 3714 65842 phylum 0 1 3714 5 36 Fibrobacteria 204430 class 0 3678 4 1 Fibrobacterales 7 218872 0 order 3 3671 1 Fibrobacteraceae 7 204431 0 family 3664 2 1 Fibrobacter 12 832 0 genus 833 species 0 3652 1 Fibrobacter succinogenes 2 706 phylum 0 456828 Candidatus Cloacimonas 6 706 2 1 0 genus 456826 Candidatus Cloacimonas acidaminovorans 700 1 species 0 456827 6573 8 142182 0 phylum 1 6573 8 40 Gemmatimonadetes 219685 class 0 1 6533 7 144 Gemmatimonadales 219686 order 0 family 0 219687 43 Gemmatimonadaceae 1 6389 6 1706036 genus 0 1 2 3655 7 Gemmatirosa 3648 1 Gemmatirosa kalamazoonesis 861299 0 species Gemmatimonas 39 3 2691 1 0 genus 173479 0 species 1379270 Gemmatimonas phototrophica 1 1237 1 1415 Gemmatimonas aurantiaca 173480 species 0 Proteobacteria 1215 2580941 2030 1 0 phylum 1224 627382 564 1 Alphaproteobacteria 2415 28211 0 class 5924 8 0 no rank 82117 1 2 2374 46 Phreatobacter 1632780 genus 0 Phreatobacter sp. S-12 2328 1 species 0 1868589 14 Polymorphum 1 2 1814 genus 0 991903 Polymorphum gilvum 1800 1 species 0 991904 0 clade 62654 2 629 0 genus 767891 Candidatus Puniceispirillum 1 2 629 1 767892 0 species 1 628 Candidatus Puniceispirillum marinum 213485 0 genus 1107 2 1 Micavibrio 17 0 species 349221 Micavibrio aeruginosavorus 1090 1 1 4 542 5 Parvularculales 255473 order 0 537 3 1 Parvularculaceae 6 255474 0 family 208215 0 genus 531 2 1 Parvularcula 3 Parvularcula bermudensis 528 1 0 species 208216 0 order 2800059 1289 2 2 1289 2800061 0 family 1289 2 1 Maricaulis 7 74317 0 genus 0 species 74318 Maricaulis maris 1 1282 1 4 1088 25 Magnetococcales 1191478 order 0 0 family 1191479 Magnetococcaceae 5 3 1063 1 0 genus 162171 Magnetococcus 2 2 1058 1 1124597 species 0 1056 1 Magnetococcus marinus 1 8 1895 8 Pelagibacterales 54526 order 0 1655514 family 0 1 1413 6 1 Pelagibacteraceae 707 2 1655516 no rank 0 0 species 744985 alpha proteobacterium HIMB59 397 1 1 310 alpha proteobacterium HIMB5 859653 species 0 3 705 1 Candidatus Pelagibacter 2 198251 0 genus 0 species 198252 Candidatus Pelagibacter ubique 414 1 no rank 0 2647897 1 289 Candidatus Pelagibacter sp. IMCC9063 1 289 0 species 1002672 2045213 genus 0 474 1 species 0 1925548 Candidatus Fonsibacter ubiquis 474 1 Rickettsiales 22 11378 53 1 0 order 766 310 2 1 Candidatus Midichloriaceae 33 1328881 0 family 277 1 0 genus 411566 1 277 Candidatus Midichloria mitochondrii 234827 0 species 1 27 6240 27 Rickettsiaceae 775 family 0 33988 tribe 0 5874 25 genus 0 780 523 Rickettsia 1 5115 23 species group 0 114277 17 2348 0 species 33989 Rickettsia amblyommatis 128 1 Rickettsia japonica 1 41 0 species 35790 species 0 787 Rickettsia australis 571 1 1105106 species 0 23 1 Rickettsia philipii species 0 35792 Rickettsia parkeri 1 14 35791 0 species 1 58 Rickettsia massiliae 188 1 Rickettsia monacensis 109232 species 0 33 1 Rickettsia africae 35788 0 species 226665 0 species 65 1 Rickettsia heilongjiangensis 33992 species 0 1 329 Rickettsia rhipicephali 0 species 42862 Rickettsia felis 1 184 Rickettsia conorii 45 1 0 species 781 Rickettsia akari 1 243 0 species 786 33991 0 species 1 99 Rickettsia montanensis 783 0 species 47 1 Rickettsia rickettsii 1 248 Rickettsia peacockii 47589 species 0 1 32 Rickettsia slovaca 35794 species 0 species group 0 114292 786 2 0 species 782 Rickettsia prowazekii 365 1 Rickettsia typhi 421 1 species 0 785 885 2 species group 0 1129742 363 1 Rickettsia canadensis 788 0 species 0 species 33990 Rickettsia bellii 522 1 114295 no rank 0 1 573 337479 species 0 1 573 Rickettsia endosymbiont of Bemisia tabaci 759 2 1 Orientia 4 69474 0 genus 755 1 Orientia tsutsugamushi 784 0 species 2115980 genus 0 339 1 species 0 2115978 Candidatus Phycorickettsia trachydisci 1 339 3 Anaplasmataceae 1 22 4454 family 0 942 Ehrlichia 10 6 1464 1 0 genus 943 0 no rank 106181 1 254 1 254 Ehrlichia sp. HF 391036 0 species 0 species group 106178 1200 4 0 species 779 Ehrlichia ruminantium 1 299 Ehrlichia chaffeensis 1 288 0 species 945 species 0 35795 Ehrlichia muris 1 147 Ehrlichia canis 466 1 0 species 944 0 genus 768 379 3 770 species 0 1 121 Anaplasma marginale 172 1 106179 0 species group 1 172 Anaplasma phagocytophilum 948 species 0 769 0 species 86 1 Anaplasma centrale 1 4 432 1 Neorickettsia 33993 genus 0 951 species 0 141 1 Neorickettsia sennetsu species 0 950 Neorickettsia risticii 1 127 Neorickettsia helminthoeca 1 163 species 0 33994 0 tribe 952 8 2176 953 genus 0 1 2176 8 32 Wolbachia 7 2144 2640676 0 no rank 77551 0 species 160 1 Wolbachia endosymbiont of Onchocerca volvulus species 0 246273 Wolbachia endosymbiont of Cimex lectularius 255 1 species 0 77038 Wolbachia endosymbiont of Drosophila simulans 1 664 66084 0 species 1 351 Wolbachia sp. wRi 80849 0 species 237 1 Wolbachia endosymbiont of Brugia malayi 1 171 Wolbachia endosymbiont of Onchocerca ochengi 100901 0 species Wolbachia endosymbiont of Drosophila melanogaster 1 306 0 species 163164 1699067 no rank 0 1 352 1528098 0 species 352 1 Rickettsiales bacterium Ac37b 951 Sphingomonadales 1 102438 82 order 0 204457 1 22 21552 363 Erythrobacteraceae 335929 family 0 0 genus 1295327 Croceicoccus 122 3 3059 1 1 1476 Croceicoccus naphthovorans 1348774 species 0 Croceicoccus marinus 1461 1 species 0 450378 2 1393 genus 0 2800686 Altererythrobacter mangrovi 596 1 species 0 1982042 692370 species 0 797 1 Altererythrobacter dongtanensis 361177 genus 0 1 4 2820 204 Altererythrobacter species 0 476157 Altererythrobacter ishigakiensis 1 422 1 1065 Altererythrobacter atlanticus 1267766 species 0 Altererythrobacter epoxidivorans 1 1129 0 species 361183 1855416 0 genus 2 1950 Erythrobacter seohaensis 1 1276 species 0 266951 1 674 Erythrobacter flavus 192812 species 0 2800681 genus 0 2 1750 Erythrobacter gangjinensis 1 1145 0 species 502682 1648404 species 0 1 605 Erythrobacter atlanticus 3744 1 2800682 0 genus 645517 species 0 3744 1 Altererythrobacter namhicola 5626 6 0 no rank 2800788 1 3 3104 154 Erythrobacter 1041 genus 0 1723 1 Erythrobacter litoralis 39960 0 species 1112 species 0 1 1227 Porphyrobacter neustonensis 1 3 2522 173 Porphyrobacter 1111 genus 0 0 no rank 2683265 2 2349 1222 1 Porphyrobacter sp. LM 6 1896196 species 0 2023229 0 species 1 1127 Porphyrobacter HT-58-2 847 1 2800685 0 genus 543877 0 species 847 1 Altererythrobacter marensis 1054 Sphingomonadaceae 1 79935 59 family 0 41297 1 1245 2685927 genus 0 species 0 1921510 Sphingomonas sp. JJ-A5 1 1245 genus 0 1434046 18 Sphingorhabdus 1 1848 3 0 no rank 2614947 2 1830 1806885 0 species 1 945 Sphingorhabdus sp. M41 species 0 2077182 Sphingorhabdus sp. YGSMI21 1 885 2709685 genus 0 1 922 266812 0 species 1 922 Sphingorhabdus flavimaris 13687 0 genus 15 23244 1 Sphingomonas 555 Sphingomonas koreensis 1 1323 species 0 93064 0 species 397260 Sphingomonas sanxanigenens 1 2312 1287 1 Sphingomonas hengshuiensis 1609977 0 species 0 species 152682 Sphingomonas melonis 1635 1 species 0 1549858 Sphingomonas taxi 1 1964 1 3813 2 1967 Sphingomonas wittichii 160791 species 0 1846 1 Sphingomonas sp. DC-6 1283312 0 strain 196159 no rank 0 6 8671 1 1696 Sphingomonas sp. NIC1 1961362 species 0 Sphingomonas sp. MM-1 1 1698 species 0 745310 1030157 species 0 1 1143 Sphingomonas sp. KC8 1 1607 Sphingomonas sp. LM7 1938607 species 0 Sphingomonas sp. LK11 1327 1 0 species 1390395 0 species 1327635 Sphingomonas sp. Cra20 1200 1 0 species 1560345 Sphingomonas panacis 1 1684 genus 0 165695 473 Sphingobium 1 15 19543 1882 1 Sphingobium yanoikuyae 13690 species 0 332055 0 species 1333 1 Sphingobium indicum Sphingobium baderi 1 1189 species 0 1332080 Sphingobium cloacae 1 1575 0 species 120107 6 8010 2611147 no rank 0 1 1654 Sphingobium sp. TKS 1315974 0 species Sphingobium sp. RAC03 1 1391 0 species 1843368 0 species 1855519 Sphingobium sp. EP60837 880 1 species 0 627192 Sphingobium sp. SYK-6 1487 1 1372 1 Sphingobium sp. YBL2 484429 species 0 Sphingobium sp. MI1205 1 1226 0 species 407020 1432 1 Sphingobium chlorophenolicum 46429 species 0 0 species 76947 Sphingobium herbicidovorans 1 878 1673076 species 0 1 1526 Sphingobium hydrophobicum Sphingobium japonicum 1245 1 species 0 332056 Blastomonas 9 2 1381 1 0 genus 150203 1 1372 2626550 0 no rank 0 species 1842535 Blastomonas sp. RAC04 1 1372 genus 0 165696 133 Novosphingobium 1 14643 5 48935 species 0 1 1807 Novosphingobium aromaticivorans 4147 1 2644732 no rank 0 0 species 702113 Novosphingobium sp. PP1Y 4147 1 species 0 205844 Novosphingobium pentaromativorans 1 4052 Novosphingobium resinovorum 1 4504 species 0 158500 1286 2 1 Zymomonas 8 541 0 genus 0 species 542 Zymomonas mobilis 1278 1 0 genus 72173 Citromicrobium 54 1336 2 1 2630544 0 no rank 1 1282 0 species 1634516 Citromicrobium sp. JL477 1282 1 10 11604 1 Sphingopyxis 232 165697 0 genus 2614943 no rank 0 4 4132 species 0 292913 Sphingopyxis sp. 113P3 1205 1 437 1 Sphingopyxis sp. LPB0140 1913578 species 0 1317 1 Sphingopyxis sp. QXT-31 1357916 species 0 species 0 1866325 Sphingopyxis sp. MG 1 1173 1052 1 Sphingopyxis terrae 33052 0 species 117207 species 0 1072 1 Sphingopyxis alaskensis 33050 species 0 2337 1 Sphingopyxis macrogoltabida 0 species 1515612 Sphingopyxis fribergensis 1208 1 Sphingopyxis granuli 1 1571 species 0 267128 33 Rhizorhabdus 1 1829 2 genus 0 1649486 0 species 1850238 Rhizorhabdus dicambivorans 1 1796 356 0 order 267927 212 1 Rhizobiales 2777 255475 family 0 1 11457 7 97 Aurantimonadaceae 1 1943 2 25 Aureimonas 414371 genus 0 2615206 no rank 0 1 1918 1 1918 Aureimonas sp. AU20 1349819 0 species 293088 genus 0 1 4 9417 189 Martelella 0 species 1486262 Martelella endophytica 2290 1 293089 species 0 1 3670 Martelella mediterranea 1 3268 2629616 no rank 0 1 3268 Martelella sp. AD-3 686597 0 species Methylobacteriaceae 211 15 32694 1 0 family 119045 911 Methylobacterium 1 9 18363 genus 0 407 2615210 no rank 0 3 6970 Methylobacterium sp. AMS5 2375 1 0 species 925818 426117 0 species 2292 1 Methylobacterium sp. 4-46 0 species 1479019 Methylobacterium sp. C1 1 2303 species 0 270351 Methylobacterium aquaticum 1 2369 Methylobacterium phyllosphaerae 1 1789 species 0 418223 Methylobacterium nodulans 1 2143 0 species 114616 334852 0 species 1772 1 Methylobacterium oryzae 31998 0 species 1 2409 Methylobacterium radiotolerans 1 2230 2 43 Microvirga 186650 genus 0 species 0 1882682 Microvirga ossetica 2187 1 0 genus 2282523 11890 3 29429 0 species 2119 1 Methylobacterium zatmanii 0 species 223967 Methylobacterium populi 3719 1 Methylobacterium extorquens 1 6052 species 0 408 335928 family 0 1 7865 7 131 Xanthobacteraceae Xanthobacter 67 2576 2 1 0 genus 279 280 species 0 1 2509 Xanthobacter autotrophicus 79 Starkeya 1 2360 2 genus 0 152053 921 0 species 1 2281 Starkeya novella Azorhizobium 59 2798 2 1 0 genus 6 0 species 7 Azorhizobium caulinodans 1 2739 Rhizobiaceae 957 55 83922 1 0 family 82115 0 no rank 227290 59939 36 genus 0 1525371 19 Neorhizobium 1 2889 2 2870 1 Neorhizobium galegae 399 species 0 357 0 genus 15034 7 1 Agrobacterium 231 359 0 species 1950 1 Agrobacterium rhizogenes 0 species 373 Agrobacterium vitis 1521 1 2 8184 0 species group 1183400 1176649 species 0 1872 1 Agrobacterium fabrum 0 species 358 Agrobacterium tumefaciens 6312 1 2632611 no rank 0 3148 2 1842536 0 species 1 1494 Agrobacterium sp. RAC06 861208 species 0 1654 1 Agrobacterium sp. H13-3 genus 0 379 2516 Rhizobium 1 42016 27 17530 21 2613769 0 no rank species 0 424182 Rhizobium sp. IRBG74 1326 1 1 10 Rhizobium sp. N741 1703967 species 0 0 species 1125847 Rhizobium sp. NT-26 1 1121 2020311 0 species 1 1129 Rhizobium sp. Kim5 species 0 1703960 Rhizobium sp. N113 3 1 6 1 Rhizobium sp. N621 1703964 species 0 0 species 1703968 Rhizobium sp. N871 1 11 0 species 2048897 Rhizobium sp. NXC24 1802 1 1 1443 Rhizobium sp. N324 1703969 species 0 Rhizobium sp. N6212 6 1 species 0 1703965 1 362 Rhizobium sp. N1314 1703961 0 species 1245 1 Rhizobium sp. S41 1869170 species 0 1 1968 Rhizobium sp. 10195 2028343 0 species 1301032 0 species 1170 1 Rhizobium sp. IE4771 Rhizobium sp. NXC14 1159 1 0 species 1981173 1914541 species 0 1 1227 Rhizobium sp. Y9 1 362 Rhizobium sp. N731 1703966 0 species Rhizobium sp. TAL182 278 1 0 species 2020313 1 1716 Rhizobium sp. ACO-34A 1571470 species 0 1 1182 Rhizobium sp. CIAT894 2020312 0 species Rhizobium sp. N1341 1 4 0 species 1703962 0 species 396 Rhizobium phaseoli 1 3225 1 9852 Rhizobium leguminosarum 384 species 0 species 0 56730 Rhizobium gallicum 2295 1 Rhizobium etli 1 5052 species 0 29449 0 species 398 Rhizobium tropici 1 1546 323620 0 genus 3030 2 1 Shinella 14 1 3016 2643062 no rank 0 1 3016 Shinella sp. HZN7 879274 species 0 10 18167 227292 0 no rank 0 genus 106591 Ensifer 98 3 3770 1 106592 species 0 1 2319 Ensifer adhaerens 716925 species 0 1353 1 Ensifer sojae genus 0 28105 346 Sinorhizobium 1 7 14397 2613772 0 no rank 2 3861 Sinorhizobium sp. RAC02 2172 1 species 0 1842534 794846 0 species 1689 1 Sinorhizobium sp. CCBAU 05631 110321 species 0 1 1182 Sinorhizobium medicae Sinorhizobium americanum 2054 1 species 0 194963 1 3797 species group 0 663276 3797 1 Sinorhizobium fredii 380 species 0 382 0 species 1 3157 Sinorhizobium meliloti 1829 6 1 Liberibacter 5 34019 0 genus 34020 species 0 382 1 Candidatus Liberibacter africanus 1 394 Candidatus Liberibacter solanacearum 556287 0 species 518 1 Liberibacter crescens 1273132 species 0 216 1 Candidatus Liberibacter americanus 309868 species 0 1 314 Candidatus Liberibacter asiaticus 34021 species 0 family 0 45401 166 Hyphomicrobiaceae 1 17947 19 genus 0 59282 69 Blastochloris 1 2 2050 1079 species 0 1 1981 Blastochloris viridis 0 genus 46913 Devosia 155 6018 4 1 5863 3 0 no rank 196773 1736675 0 species 2436 1 Devosia sp. A16 2083786 species 0 1334 1 Devosia sp. I507 Devosia sp. H5989 1 2093 0 species 1643450 475 2 1 Filomicrobium 1 119044 0 genus species 0 1608628 Candidatus Filomicrobium marinum 1 474 81 genus 0 1 4 4418 56 Hyphomicrobium 0 no rank 2619925 1 1309 1309 1 Hyphomicrobium sp. MC1 717785 species 0 1427356 0 species 1433 1 Hyphomicrobium nitrativorans 0 species 53399 Hyphomicrobium denitrificans 1620 1 genus 0 1082930 30 Pelagibacterium 1 2 1007 531813 0 species 977 1 Pelagibacterium halotolerans 1 2 1601 29 Rhodomicrobium 1068 genus 0 0 species 1069 Rhodomicrobium vannielii 1 1572 2212 2 1 Rhodoplanes 77 29407 0 genus 2135 1 2619116 no rank 0 674703 species 0 2135 1 Rhodoplanes sp. Z2-YC6860 family 0 772 15 Bartonellaceae 1 9170 18 Bartonella 36 9155 17 1 0 genus 773 Bartonella australis 291 1 species 0 388640 Bartonella quintana 1 201 species 0 803 0 species 1686310 Bartonella apis 1 1832 38323 0 species 314 1 Bartonella henselae 0 species 56426 Bartonella clarridgeiae 931 1 6 3418 2645622 no rank 0 Bartonella sp. Raccoon60 1 682 0 species 1933912 Bartonella sp. A1379B 1 694 species 0 1933910 Bartonella sp. JB63 701 1 species 0 1933907 658 1 Bartonella sp. JB15 1933906 species 0 1933904 0 species 307 1 Bartonella sp. WD16.2 Bartonella sp. 1-1C 376 1 species 0 515256 774 0 species 1 255 Bartonella bacilliformis 1318743 0 species 1 457 Bartonella ancashensis species 0 33047 Bartonella vinsonii 1 327 species 0 33045 Bartonella grahamii 403 1 Bartonella tribocorum 1 690 species 0 85701 Rhodobiaceae 3 1188 3 1 0 family 119043 0 genus 256616 Parvibaculum 31 2 1185 1 0 species 256618 Parvibaculum lavamentivorans 1 1154 family 0 69277 163 Phyllobacteriaceae 1 26705 20 8 Hoeflea 1 1290 2 genus 0 274591 1 1282 no rank 0 2614931 Hoeflea sp. IMCC20628 1 1282 species 0 1620421 genus 0 68287 563 Mesorhizobium 1 9 18221 381 species 0 1 2345 Mesorhizobium loti Mesorhizobium ciceri 2806 1 species 0 39645 2066070 0 species 1 2075 Mesorhizobium japonicum Mesorhizobium sp. B7 1 1241 0 species 1670800 Mesorhizobium australicum 1 1827 0 species 536018 2252 1 325217 0 no rank 1 2252 Mesorhizobium sp. WSM1497 278153 0 species 0 species 593909 Mesorhizobium opportunistum 2330 1 Mesorhizobium amorphae 2782 1 species 0 71433 2972 2 1 Aminobacter 37 31988 0 genus 0 species 83263 Aminobacter aminovorans 2935 1 1582 2 1 Chelativorans 8 449972 0 genus 1574 1 2643807 0 no rank 266779 0 species 1574 1 Chelativorans sp. BNC1 245876 0 genus 966 2 1 Nitratireductor 44 1 922 Nitratireductor basaltis 472175 species 0 1 2 1511 27 Phyllobacterium 28100 genus 0 Phyllobacterium zundukense 1484 1 0 species 1867719 41294 family 0 1 50001 26 625 Bradyrhizobiaceae genus 0 911 16 Nitrobacter 1 3 1928 1153 1 Nitrobacter hamburgensis 912 0 species 0 species 913 Nitrobacter winogradskyi 1 759 190 Rhodopseudomonas 1 2 11285 genus 0 1073 species 0 1076 Rhodopseudomonas palustris 1 11095 0 genus 1649510 Variibacter 94 2 1141 1 1333996 0 species 1047 1 Variibacter gotjawalensis genus 0 374 761 Bradyrhizobium 1 11 25177 0 species 44255 Bradyrhizobium oligotrophicum 1 2239 Bradyrhizobium icense 1511 1 0 species 1274631 0 species 1355477 Bradyrhizobium diazoefficiens 3628 1 3679 1 Bradyrhizobium japonicum 375 species 0 13359 6 no rank 0 2631580 2431 1 Bradyrhizobium sp. BTAi1 288000 species 0 115808 0 species 1 2075 Bradyrhizobium sp. ORS 285 2057741 0 species 1 2475 Bradyrhizobium sp. SK17 114615 0 species 1 2111 Bradyrhizobium sp. ORS 278 species 0 1223566 Bradyrhizobium sp. CCGE-LA001 2093 1 1 2174 Bradyrhizobium sp. 376 0 species genus 0 85413 191 Bosea 1 8497 5 Bosea vaviloviae 1 2148 species 0 1526658 2653178 0 no rank 6158 3 0 species 1792307 Bosea sp. PAMC 26642 1629 1 1842539 species 0 1 2396 Bosea sp. RAC05 Bosea sp. AS-1 2133 1 species 0 2015316 40136 0 genus 2 1348 1 Oligotropha 56 0 species 40137 Oligotropha carboxidovorans 1 1292 4212 6 119042 no rank 0 1572860 0 genus 1786 2 1 Hartmannibacter 23 Hartmannibacter diazotrophicus 1763 1 species 0 1482074 1251 2 1 Pseudorhodoplanes 22 1734920 0 genus Pseudorhodoplanes sinuspersici 1229 1 species 0 1235591 1484898 0 genus 2 1175 1 Methyloceanibacter 26 0 species 1384459 Methyloceanibacter caenitepidi 1 1149 family 0 2036754 34 Chelatococcaceae 1 3868 4 3 3834 1 Chelatococcus 119 28209 0 genus 444444 species 0 1 1461 Chelatococcus daeguensis 2638111 no rank 0 1 2254 0 species 1702325 Chelatococcus sp. CO-6 2254 1 Brucellaceae 88 20 10835 1 0 family 118882 0 genus 234 Brucella 1583 14 4016 1 287 1 Brucella vulpis 981386 0 species 0 no rank 2632610 978 4 301 1 Brucella sp. 09RB8471 1149952 0 species Brucella sp. 141012304 1 262 0 species 1885919 0 species 1891098 Brucella sp. 2002734562 107 1 Brucella sp. 09RB8910 308 1 0 species 1844051 65 1 Brucella melitensis 29459 0 species Brucella microti 52 1 species 0 444163 120576 0 species 1 226 Brucella pinnipedialis 0 species 236 Brucella ovis 55 1 Brucella ceti 1 291 0 species 120577 199 1 Brucella canis 36855 0 species 0 species 235 Brucella abortus 1 162 1 118 Brucella suis 29461 0 species 528 genus 0 1 5 6731 59 Ochrobactrum 1 1758 Ochrobactrum pituitosum 571256 species 0 1 1609 Ochrobactrum sp. A44 271865 species 0 species 0 529 Ochrobactrum anthropi 1 1436 419475 0 species 1869 1 Ochrobactrum pseudogrignonense 31993 0 family 3271 6 1 Methylocystaceae 23 133 0 genus 3 1979 1 Methylocystis 74 2625913 0 no rank 1 778 778 1 Methylocystis sp. SC2 187303 species 0 1127 1 Methylocystis bryophila 655015 0 species 1 1269 2 51 Methylosinus 425 genus 0 426 0 species 1 1218 Methylosinus trichosporium 45404 0 family 2015 5 1 Beijerinckiaceae 22 532 0 genus 686 2 1 Beijerinckia 12 674 1 Beijerinckia indica 533 0 species 120652 genus 0 1 2 1307 17 Methylocella 0 species 199596 Methylocella silvestris 1290 1 2800060 order 0 2353 5 47 Hyphomonadaceae 1 5 2353 family 0 69657 0 genus 85 Hyphomonas 9 3 1738 1 555 1 2630699 no rank 0 0 species 1906738 Hyphomonas sp. Mor2 1 555 81032 species 0 1 1174 Hyphomonas neptunium 0 genus 2723 1 568 species 0 2724 Hirschia baltica 1 568 Rhodospirillales 1217 91047 66 1 0 order 204441 41295 0 family 53571 30 1 Rhodospirillaceae 948 0 genus 1081 Rhodospirillum 96 4992 3 1 34018 species 0 2978 1 Rhodospirillum centenum 1 1918 Rhodospirillum rubrum 1085 species 0 1673 2 1 Pararhodospirillum 16 1612157 0 genus Pararhodospirillum photometricum 1657 1 0 species 1084 genus 0 191 407 Azospirillum 1 20249 5 2294 1 Azospirillum humicireducens 1226968 species 0 192 species 0 6153 1 Azospirillum brasilense Azospirillum thiophilum 1 4121 species 0 528244 1 7274 Azospirillum lipoferum 193 0 species 1182780 0 genus 993 2 1 Magnetospira 3 no rank 0 2685734 1 990 1 990 Magnetospira sp. QH-2 1288970 0 species Niveispirillum 40 2 2014 1 0 genus 1543704 0 species 1612173 Niveispirillum cyanobacteriorum 1 1974 1 2 4226 55 Nitrospirillum 1543705 genus 0 Nitrospirillum amazonense 1 4171 species 0 28077 Tistrella 43 3238 2 1 0 genus 171436 1 3195 Tistrella mobilis 171437 species 0 1804663 genus 0 1 670 2 20 Haematospirillum 1549855 species 0 1 650 Haematospirillum jordaniae 13134 0 genus 5 11439 1 Magnetospirillum 276 0 species 55518 Magnetospirillum gryphiswaldense 1 2924 Magnetospirillum magneticum 1 2514 0 species 84159 2 5725 2617991 0 no rank 1 2777 Magnetospirillum sp. ME-1 1639348 0 species 0 species 1663591 Magnetospirillum sp. XM-1 1 2948 2703 3 1 Thalassospira 34 168934 0 genus Thalassospira xiamenensis 1 1379 0 species 220697 2048283 0 species 1290 1 Thalassospira sp. CSC3H3 426 1 genus 0 1263978 426 1 Candidatus Endolissoclinum faulkneri 1263979 0 species 1 36259 35 545 Acetobacteraceae 433 family 0 Parasaccharibacter 5 868 2 1 0 genus 1602345 Parasaccharibacter apium 1 863 0 species 1510841 2 2308 1 Granulibacter 22 364409 0 genus species 0 364410 Granulibacter bethesdensis 2286 1 1 2 1051 25 Kozakia 153497 genus 0 Kozakia baliensis 1 1026 species 0 153496 91914 genus 0 1 997 2 8 Asaia 989 1 Asaia bogorensis 91915 0 species 94 Acidiphilium 1 3 2994 genus 0 522 species 0 524 Acidiphilium cryptum 1446 1 Acidiphilium multivorum 1454 1 0 species 62140 Gluconacetobacter 45 1835 2 1 0 genus 89583 33996 species 0 1 1790 Gluconacetobacter diazotrophicus genus 0 441 55 Gluconobacter 1 3 2640 Gluconobacter oxydans 1764 1 species 0 442 Gluconobacter albidus 1 821 species 0 318683 1 2 956 26 Neoasaia 320496 genus 0 1 930 Neoasaia chiangmaiensis 320497 0 species 125216 genus 0 1 5968 3 205 Roseomonas 257708 0 species 1 2953 Roseomonas gilardii 2617492 0 no rank 1 2810 species 0 2018065 Roseomonas sp. FDAARGOS_362 1 2810 1 9229 8 115 Acetobacter 434 genus 0 species 0 1633874 Acetobacter oryzifermentans 635 1 1 1155 subgenus 0 151157 Acetobacter aceti 1 1155 species 0 435 Acetobacter senegalensis 1079 1 0 species 446692 Acetobacter tropicalis 1159 1 species 0 104102 3388 1 Acetobacter pasteurianus 438 species 0 0 species 1076596 Acetobacter persici 1 1032 1 666 Acetobacter pomorum 65959 0 species 1 6868 5 190 Komagataeibacter 1434011 genus 0 28448 species 0 1 2968 Komagataeibacter xylinus 33995 species 0 1328 1 Komagataeibacter europaeus Komagataeibacter nataicola 1 1473 species 0 265960 1 909 Komagataeibacter medellinensis 1177712 species 0 order 0 204455 613 Rhodobacterales 1 109418 94 93 108805 1 Rhodobacteraceae 2111 31989 0 family no rank 0 58840 2195 2 Rhodobacteraceae bacterium 741 1 0 species 1904441 0 species 2033435 Rhodobacteraceae bacterium QY30 1454 1 53945 genus 0 1 2188 4 20 Octadecabacter 0 species 53946 Octadecabacter arcticus 1 1038 1458307 species 0 469 1 Octadecabacter temperatus 1217908 0 species 1 661 Octadecabacter antarcticus 1759396 genus 0 1 1258 2 1 Marivivens 2622455 0 no rank 1257 1 1920883 species 0 1 1257 Marivivens sp. JLT3646 genus 0 34008 75 Rhodovulum 1 5634 4 1 2691 Rhodovulum sulfidophilum 35806 species 0 2 2868 0 no rank 2631432 species 0 1564506 Rhodovulum sp. P5 1296 1 Rhodovulum sp. MB263 1 1572 species 0 308754 1649279 0 genus 1 1458 379347 species 0 1458 1 Ruegeria mobilis 42 Celeribacter 1 5462 5 genus 0 875170 1397108 0 species 1 418 Celeribacter marinus 1208324 species 0 1 2052 Celeribacter indicus species 0 1411902 Celeribacter manganoxidans 1 1573 species 0 1758178 Celeribacter ethanolicus 1377 1 119541 genus 0 1 960 2 4 Rhodobaca 1 956 Rhodobaca barguzinensis 441209 species 0 205 Rhodobacter 1 5 11098 genus 0 1060 1061 0 species 1 2907 Rhodobacter capsulatus 1063 0 species 1 4841 Rhodobacter sphaeroides 3145 2 0 no rank 196779 1850250 0 species 1 1430 Rhodobacter sp. LPB0142 0 species 2033869 Rhodobacter sp. CZR27 1 1715 1 2 1629 14 Roseovarius 74030 genus 0 1615 1 Roseovarius mucosus 215743 0 species 1 Planktomarina 1 505 2 genus 0 1284657 1 504 Planktomarina temperata 1284658 0 species 3 Tateyamaria 1 1280 2 genus 0 299261 0 species 299262 Tateyamaria omphalii 1 1277 10195 5 1 Phaeobacter 93 302485 0 genus species 0 60890 Phaeobacter gallaeciensis 3016 1 species 0 1580596 Phaeobacter piscinae 1 3078 1137 1 Phaeobacter porticola 1844006 species 0 species 0 221822 Phaeobacter inhibens 1 2871 60136 genus 0 1 3 3047 36 Sulfitobacter 196795 no rank 0 1451 1 1917485 species 0 1 1451 Sulfitobacter sp. AM1-D1 1560 1 Sulfitobacter pseudonitzschiae 1402135 species 0 159345 0 genus 1346 2 1 Roseibacterium 1 0 species 159346 Roseibacterium elongatum 1345 1 2 1414 1 Dinoroseobacter 1 309512 0 genus 215813 species 0 1 1413 Dinoroseobacter shibae Confluentimicrobium 7 1983 2 1 0 genus 1609958 2643318 0 no rank 1976 1 1976 1 Confluentimicrobium sp. EMB200-NS6 1609966 0 species 278 Paracoccus 1 16382 9 genus 0 265 species 0 1077935 Paracoccus zhejiangensis 2309 1 species 0 266 Paracoccus denitrificans 2605 1 Paracoccus aminophilus 1397 1 0 species 34003 2018 1 Paracoccus sp. CBA4604 2065379 species 0 1921 1 Paracoccus aminovorans 34004 0 species 246570 no rank 0 1342 1 0 species 1529068 Paracoccus sp. BM15 1342 1 1 1664 Paracoccus contaminans 1945662 species 0 Paracoccus yeei 1 2848 species 0 147645 Marinovum 25 2313 2 1 0 genus 367771 0 species 42444 Marinovum algicola 1 2288 genus 0 191028 11 Leisingera 1 2 1764 133924 species 0 1753 1 Leisingera methylohalidivorans 1 1348 2211641 0 genus 0 species 245188 Loktanella vestfoldensis 1 1348 3214 2 1 Pannonibacter 19 227873 0 genus 0 species 121719 Pannonibacter phragmitetus 1 3195 0 genus 97050 Ruegeria 24 3467 3 1 Ruegeria pomeroyi 1 1992 0 species 89184 2625375 no rank 0 1 1451 0 species 292414 Ruegeria sp. TM1040 1451 1 2 2626 1 Sagittula 22 58842 0 genus 2624628 no rank 0 2604 1 1 2604 Sagittula sp. P11 2009329 species 0 2 4427 263377 genus 0 0 species 1229727 Thiobacimonas profunda 2147 1 2640570 0 no rank 2280 1 1 2280 Yangia sp. CCB-MM3 1792508 species 0 92944 genus 0 1 3094 3 139 Ketogulonicigenium Ketogulonicigenium robustum 1536 1 0 species 92947 Ketogulonicigenium vulgare 1419 1 species 0 92945 0 genus 188905 Jannaschia 3 2 1446 1 2645469 no rank 0 1 1443 1 1443 Jannaschia sp. CCS1 290400 species 0 genus 0 436357 Thalassococcus 10 1 genus 0 478070 35 Labrenzia 1 5186 4 0 species 187304 Labrenzia aggregata 1781 1 2648686 no rank 0 2 3370 0 species 1674922 Labrenzia sp. CP4 1788 1 1582 1 Labrenzia sp. VG12 2021862 0 species Pelagibaca 16 2 2341 1 0 genus 360528 1250539 0 species 2325 1 Pelagibaca abyssi 2 1408 1 Thioclava 2 285107 0 genus 1406 1 Thioclava nitratireducens 1915078 0 species 2 Antarctobacter 1 1438 2 genus 0 74032 Antarctobacter heliothermus 1 1436 species 0 74033 Roseobacter 1 1705 3 1 0 genus 2433 2434 species 0 955 1 Roseobacter denitrificans Roseobacter litoralis 1 749 0 species 42443 3 1 Loktanella 245186 0 genus genus 0 1097466 15 Defluviimonas 1 2 2197 2182 1 Defluviimonas alba 1335048 species 0 1579315 0 genus 2 673 1 Halocynthiibacter 5 0 species 1579316 Halocynthiibacter arcticus 668 1 1921002 order 0 1 905 5 2 Holosporales 1777752 0 family 1 184 1521255 0 genus 1 184 91604 species 0 184 1 Candidatus Paracaedibacter acanthamoebae family 0 44746 435 1 204454 0 no rank 1 435 species 0 86106 endosymbiont of Acanthamoeba sp. UWC8 435 1 Caedimonadaceae 1 284 2 1 0 family 2100208 1 283 genus 0 1509243 species 0 1509244 Candidatus Nucleicultrix amoebiphila 283 1 Caulobacterales 217 28763 20 1 0 order 204458 1 19 28546 536 Caulobacteraceae 76892 family 0 81440 0 no rank 1 836 Caulobacteraceae bacterium OTSz_A_272 836 1 0 species 1759059 2 2000 1 Phenylobacterium 21 20 0 genus 284016 0 species 1 1979 Phenylobacterium zucineum 76890 0 genus 1604 2 1 Asticcacaulis 24 78587 species 0 1580 1 Asticcacaulis excentricus genus 0 75 217 Caulobacter 1 13719 6 69395 0 species 1 1317 Caulobacter henricii 2648921 0 no rank 2606 1 Caulobacter sp. K31 2606 1 0 species 366602 0 species 88688 Caulobacter segnis 2423 1 2381 1 Caulobacter mirabilis 69666 0 species 4775 1 Caulobacter vibrioides 155892 0 species genus 0 41275 227 Brevundimonas 1 7 9851 1 1270 Brevundimonas vesicularis 41276 species 0 species 0 588932 Brevundimonas naejangsanensis 1 1752 74313 species 0 1696 1 Brevundimonas subvibrioides no rank 0 2622653 3 4906 species 0 1938605 Brevundimonas sp. LM2 1 1758 0 species 1827469 Brevundimonas sp. GW460-12-10-14-LB2 1 1300 1532555 0 species 1 1848 Brevundimonas sp. DS20 Acidithiobacillia 2 7 3664 1 0 class 1807140 0 order 225057 Acidithiobacillales 32 6 3662 1 Acidithiobacillaceae 17 5 3630 1 0 family 225058 119977 genus 0 1 4 3613 72 Acidithiobacillus Acidithiobacillus ferrooxidans 1 1247 0 species 920 33059 0 species 1 976 Acidithiobacillus caldus 160808 species 0 1318 1 Acidithiobacillus ferrivorans 580370 0 class 2494 6 1 Zetaproteobacteria 7 5 2487 1 Mariprofundales 9 580371 0 order 0 family 580372 Mariprofundaceae 12 2478 4 1 Mariprofundus 8 2466 3 1 0 genus 377315 Mariprofundus aestuarium 1 1159 0 species 1921086 1921087 species 0 1 1299 Mariprofundus ferrinatatus 1553900 class 0 1 4688 12 7 Oligoflexia 0 order 213481 Bdellovibrionales 14 2822 5 1 Bdellovibrionaceae 7 4 2808 1 0 family 213483 genus 0 958 8 Bdellovibrio 1 3 2801 Bdellovibrio bacteriovorus 1 2496 0 species 959 1 297 Bdellovibrio exovorus 453816 0 species Bacteriovoracales 8 1859 6 1 0 order 2024979 1 Halobacteriovoraceae 1 2 721 family 0 1652132 1 720 1652133 genus 0 0 species 97084 Halobacteriovorax marinus 1 720 1 3 1130 3 Bacteriovoracaceae 263369 family 0 0 genus 146784 Bacteriovorax 5 1127 2 1 Bacteriovorax stolpii 1 1122 species 0 960 1 1054334 892 2135 Gammaproteobacteria 1236 class 0 order 0 135625 24 Pasteurellales 1 34005 32 Pasteurellaceae 2336 31 33981 1 0 family 712 4895 5 1 Actinobacillus 14 713 0 genus 2717 1 Actinobacillus pleuropneumoniae 715 species 0 776 1 Actinobacillus succinogenes 67854 species 0 718 species 0 1 803 Actinobacillus equuli 716 0 species 1 585 Actinobacillus suis 1355 2 1 Basfia 5 697331 0 genus [Mannheimia] succiniciproducens 1350 1 species 0 157673 0 genus 745 Pasteurella 6 3 4459 1 species 0 747 Pasteurella multocida 1 3750 Pasteurella dagmatis 1 703 0 species 754 1 2309 3 17 Aggregatibacter 416916 genus 0 783 1 Aggregatibacter actinomycetemcomitans 714 0 species 732 0 species 1509 1 Aggregatibacter aphrophilus 1 1060 0 genus 214906 species 0 731 Histophilus somni 1 1060 8 Bibersteinia 1 2 4585 genus 0 476528 Bibersteinia trehalosi 1 4577 species 0 47735 genus 0 724 64 Haemophilus 1 6290 6 [Haemophilus] ducreyi 1 501 species 0 730 249188 0 species 561 1 Haemophilus pittmaniae 0 no rank 2609962 1 528 0 species 712310 Haemophilus sp. oral taxon 036 1 528 Haemophilus influenzae 1813 1 species 0 727 729 species 0 1 2823 Haemophilus parainfluenzae 2094023 genus 0 1 2 1214 7 Glaesserella Glaesserella parasuis 1 1207 0 species 738 4711 4 1 Mannheimia 89 75984 0 genus 0 no rank 2645054 1 887 1432056 0 species 887 1 Mannheimia sp. USDA-ARS-USMARC-1261 species 0 85404 Mannheimia varigena 1 1403 Mannheimia haemolytica 2332 1 0 species 75985 2 767 1 Gallibacterium 5 155493 0 genus 1 762 Gallibacterium anatis 750 species 0 0 no rank 118884 14 6226 1 479 0 clade 198346 479 1 Candidatus Baumannia cicadellinicola 186490 0 species 655184 genus 0 1 3 1074 1 Candidatus Thioglobus 1 697 Candidatus Thioglobus singularis 1427364 species 0 Candidatus Thioglobus autotrophicus 1 376 0 species 1705394 1524249 0 genus 2 852 1 Pseudohongiella 2 species 0 1249552 Pseudohongiella spirulinae 1 850 1218 4 0 clade 32036 1 Candidatus Ruthia 1 214 2 genus 0 1541743 Candidatus Ruthia magnifica 213 1 0 species 386487 0 species 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 1 434 Calyptogena okutanii thioautotrophic gill symbiont 570 1 0 species 410330 10 Sedimenticola 1 2 1313 genus 0 349742 1543721 species 0 1303 1 Sedimenticola thiotaurini 1608298 0 genus 1290 2 1 Thiolapillus 8 1 1282 Thiolapillus brandeum 1076588 0 species 135623 order 0 1 42707 44 30 Vibrionales family 0 641 192 Vibrionaceae 1 43 42677 4 4492 1 Photobacterium 22 657 0 genus 0 species 74109 Photobacterium profundum 1 1461 species 0 1295392 Photobacterium gaetbulicola 1 1394 0 species 38293 Photobacterium damselae 1 1615 246861 0 genus 595 2 1 Grimontia 8 Grimontia hollisae 587 1 species 0 673 Paraphotobacterium 1 2 568 1 0 genus 2042066 1 567 Paraphotobacterium marinum 1755811 0 species 511678 genus 0 1 4 3493 56 Aliivibrio 0 species 668 Aliivibrio fischeri 1 1940 species 0 80852 Aliivibrio wodanis 1 858 Aliivibrio salmonicida 1 639 0 species 40269 662 0 genus 30 33337 1 Vibrio 660 2168 2 0 no rank 2614977 1 825 Vibrio sp. 2521-89 2014742 0 species Vibrio sp. EJY3 1 1343 0 species 1116375 28173 0 species 1 947 Vibrio nigripulchritudo 485 1 1891919 0 species group Vibrio tubiashii 1 485 species 0 29498 Vibrio breoganii 1 548 0 species 553239 Vibrio coralliilyticus 1 1392 0 species 190893 Vibrio vulnificus 1 2337 species 0 672 Vibrio mimicus 1514 1 species 0 674 Vibrio tapetis 1029 1 0 species 52443 species 0 212663 Vibrio tasmaniensis 875 1 1657 1 Vibrio fluvialis 676 species 0 1377 1 Vibrio cholerae 666 0 species 0 species group 717610 12540 10 0 species 680 Vibrio campbellii 1 1334 Vibrio parahaemolyticus 1770 1 0 species 670 species 0 663 Vibrio alginolyticus 1 2348 766224 species 0 1 469 Vibrio jasicida 2315253 0 species subgroup 2039 2 1 469 Vibrio antiquarius 150340 species 0 1 1570 Vibrio diabolicus 50719 0 species 190895 0 species 371 1 Vibrio rotiferianus species 0 669 Vibrio harveyi 1077 1 691 species 0 1 2277 Vibrio natriegens Vibrio owensii 855 1 species 0 696485 761 1 Vibrio scophthalmi 45658 0 species 0 species 29494 Vibrio furnissii 853 1 Vibrio hyugaensis 1 597 0 species 1534743 1037 1 Vibrio tritonius 1435069 species 0 Vibrio qinghaiensis 563 1 species 0 2025808 Vibrio gazogenes 1 662 species 0 687 Vibrio anguillarum 1335 1 species 0 55601 0 order 1706369 Cellvibrionales 73 14132 29 1 family 0 1706372 43 Halieaceae 1 4 1521 39 Halioglobus 1 3 1478 genus 0 1217416 793 1 Halioglobus pacificus 930806 species 0 0 species 930805 Halioglobus japonicus 1 646 1706373 family 0 1 5 3211 25 Microbulbiferaceae Microbulbifer 28 3186 4 1 0 genus 48073 1 1234 Microbulbifer aggregans 1769779 0 species Microbulbifer thermotolerans 963 1 species 0 252514 260552 0 species 961 1 Microbulbifer agarilyticus family 0 1706371 37 Cellvibrionaceae 1 7308 12 1027 1 316625 0 genus 1027 1 Saccharophagus degradans 86304 0 species 63 Cellvibrio 1 3717 4 genus 0 10 2624793 0 no rank 2 2493 0 species 1945512 Cellvibrio sp. PSBB023 1198 1 1987723 0 species 1295 1 Cellvibrio sp. PSBB006 1161 1 Cellvibrio japonicus 155077 species 0 Teredinibacter 8 882 2 1 0 genus 2425 2426 0 species 874 1 Teredinibacter turnerae 2 747 1 Agarilytica 1 2036021 0 genus species 0 1737490 Agarilytica rhodophyticola 746 1 1 Simiduia 1 2 898 genus 0 447467 0 species 447471 Simiduia agarivorans 897 1 1 2019 7 15 Spongiibacteraceae 1706375 family 0 Spongiibacter 1 2 421 1 0 genus 630749 2631504 no rank 0 1 420 Spongiibacter sp. IMCC21906 1 420 species 0 1620392 1 2 884 49 Zhongshania 1434050 genus 0 835 1 Zhongshania aliphaticivorans 1470434 0 species genus 0 1084558 3 Oceanicoccus 1 2 699 716816 species 0 1 696 Oceanicoccus sagamiensis 38071 51 1 Chromatiales 585 135613 0 order 255526 family 0 1 4 1666 21 Halothiobacillaceae 36 Halothiobacillus 1 3 1645 genus 0 109262 2636392 0 no rank 1 912 species 0 1860122 Halothiobacillus sp. LS2 912 1 1 697 Halothiobacillus neapolitanus 927 0 species 451214 no rank 0 2 1998 0 genus 1273155 Thiohalobacter 22 1998 2 1 species 0 585455 Thiohalobacter thiocyanaticus 1976 1 0 family 1738654 Woeseiaceae 4 3 926 1 1738655 0 genus 2 922 1 Woeseia 9 1548547 species 0 1 913 Woeseia oceani 2 1101 family 0 449719 2 1101 1 Granulosicoccus 9 437504 0 genus 1092 1 Granulosicoccus antarcticus 437505 species 0 Ectothiorhodospiraceae 169 18 15781 1 0 family 72276 genus 0 1051 18 Ectothiorhodospira 1 1939 2 2684909 no rank 0 1 1921 1 1921 Ectothiorhodospira sp. BSL-9 1442136 species 0 1335745 genus 0 1 3 1203 43 Spiribacter 0 species 1335746 Spiribacter salinus 1 411 1335757 species 0 749 1 Spiribacter curvatus 1765964 genus 0 1 2 1026 13 Acidihalobacter species 0 160660 Acidihalobacter prosperus 1013 1 133193 genus 0 1 2 1661 64 Alkalilimnicola 0 species 351052 Alkalilimnicola ehrlichii 1597 1 106633 0 genus 6 8097 1 Thioalkalivibrio 107 species 0 108010 Thioalkalivibrio paradoxus 1 1332 Thioalkalivibrio nitratireducens 1 1334 0 species 186931 2621013 no rank 0 1 1463 396595 species 0 1 1463 Thioalkalivibrio sp. K90mix 0 species 1033854 Thioalkalivibrio sulfidiphilus 1 2491 106634 0 species 1 1370 Thioalkalivibrio versutus 22 Halorhodospira 1 1686 2 genus 0 85108 1664 1 Halorhodospira halophila 1053 0 species 14715 18 1 Chromatiaceae 259 1046 0 family 1 2 397 1 Candidatus Nitrosoglobus 1980513 genus 0 1 396 Candidatus Nitrosoglobus terrae 1630141 species 0 Thiocystis 58 2 2141 1 0 genus 13724 1 2083 Thiocystis violascens 73141 species 0 1 2 1381 30 Thioflavicoccus 156885 genus 0 1 1351 Thioflavicoccus mobilis 80679 0 species 85072 genus 0 1 3202 2 15 Allochromatium 3187 1 Allochromatium vinosum 1049 species 0 69 Marichromatium 1 2 1930 genus 0 85076 37487 species 0 1861 1 Marichromatium purpuratum 1 2663 2 20 Thiodictyon 53392 genus 0 Candidatus Thiodictyon syntrophicum 2643 1 0 species 1166950 genus 0 1227 9 Nitrosococcus 1 1195 4 Nitrosococcus halophilus 540 1 species 0 133539 1229 species 0 1 364 Nitrosococcus oceani 1 282 Nitrosococcus watsonii 473531 0 species 1547 1 no rank 0 82569 species 0 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 1547 1 1 1299 3 17 Wenzhouxiangellaceae 1676141 family 0 1676142 genus 0 1 2 1282 28 Wenzhouxiangella Wenzhouxiangella marina 1 1254 0 species 1579979 135624 0 order 50688 29 1 Aeromonadales 350 1 50338 28 466 Aeromonadaceae 84642 family 0 225143 0 genus 1105 3 1 Oceanisphaera 2 1903694 species 0 1 599 Oceanisphaera sp. AMac2203 504 1 Oceanisphaera profunda 1416627 species 0 18 42257 1 Aeromonas 3463 642 0 genus Aeromonas media 1 1619 0 species 651 257493 no rank 0 11799 8 1920107 0 species 1116 1 Aeromonas sp. ASNIH7 1636606 species 0 1 1282 Aeromonas sp. ASNIH1 1 1248 Aeromonas sp. ASNIH2 1636607 0 species Aeromonas sp. CA23 1 1641 species 0 2033032 Aeromonas sp. ASNIH3 1184 1 species 0 1636608 species 0 1758179 Aeromonas sp. ASNIH5 1 1674 0 species 1636609 Aeromonas sp. ASNIH4 1 1963 1 1691 Aeromonas sp. CU5 2033033 0 species 0 species 652 Aeromonas schubertii 1 1909 Aeromonas aquatica 1662 1 species 0 558964 Aeromonas hydrophila 9687 1 species 0 644 1 2096 Aeromonas dhakensis 196024 0 species 0 species 645 Aeromonas salmonicida 1 2710 654 0 species 1 4137 Aeromonas veronii 648 species 0 1 1278 Aeromonas caviae 1897 1 Aeromonas rivipollensis 948519 0 species 64 Oceanimonas 1 2 2602 genus 0 129577 2538 1 2636315 no rank 0 1 2538 Oceanimonas sp. GK1 511062 0 species Zobellella 9 3016 2 1 0 genus 347533 1 3007 Zobellella denitrificans 347534 0 species 0 genus 43947 Tolumonas 6 2 892 1 Tolumonas auensis 886 1 species 0 43948 20 10129 1 Legionellales 9 118969 0 order 11 Coxiellaceae 1 5 1076 family 0 118968 1 Coxiella 1 900 3 genus 0 776 777 species 0 1 736 Coxiella burnetii 1 163 no rank 0 2676648 species 0 325775 Coxiella endosymbiont of Amblyomma americanum 163 1 1 165 134284 no rank 0 0 species 1592897 Coxiella-like endosymbiont 165 1 0 family 444 Legionellaceae 80 9044 14 1 0 genus 465 1 451 Tatlockia micdadei 451 1 species 0 451 Legionella 199 8513 12 1 0 genus 445 0 species 45067 Legionella lansingensis 288 1 species 0 29423 Legionella oakridgensis 1 391 605 1 Legionella longbeachae 450 species 0 2005262 0 species 152 1 Legionella endosymbiont of Polyplax serrata Legionella hackeliae 1 599 species 0 449 1 544 Legionella waltersii 66969 0 species 1 1343 Legionella sainthelensi 28087 species 0 0 species 452 Legionella spiritensis 1 561 1010 1 Legionella clemsonensis 1867846 species 0 96230 0 species 627 1 Legionella fallonii 2194 1 Legionella pneumophila 446 species 0 0 no rank 33811 2 3093 0 species 83406 gamma proteobacterium HdN1 1109 1 1248727 0 species 1 1984 endosymbiont of unidentified scaly snail isolate Monju 391 1 0 order 135615 391 1 0 family 868 genus 0 869 391 1 870 species 0 391 1 Dichelobacter nodosus Thiotrichales 7 15030 35 1 0 order 72273 135616 family 0 1 4917 15 40 Piscirickettsiaceae 338 2 1 Hydrogenovibrio 2 28884 0 genus Hydrogenovibrio crunogenus 1 336 species 0 39765 27 Cycloclasticus 1 4 1635 genus 0 34067 no rank 0 2621467 1080 2 596 1 Cycloclasticus sp. P1 385025 species 0 728003 species 0 484 1 Cycloclasticus sp. PY97N 0 species 1329899 Cycloclasticus zancles 1 528 genus 0 1237 3 Piscirickettsia 1 2 987 Piscirickettsia salmonis 984 1 0 species 1238 0 genus 40222 Methylophaga 9 1399 3 1 Methylophaga nitratireducenticrescens 808 1 0 species 754476 Methylophaga frappieri 1 582 0 species 754477 933 0 genus 3 518 1 Thiomicrospira 3 Thiomicrospira aerophila 200 1 0 species 92245 species 0 147268 Thiomicrospira cyclica 1 315 5 Thiotrichaceae 1 4 1059 family 0 135617 40751 0 genus 266 2 1 Thioploca 6 Thioploca ingrica 260 1 species 0 40754 1021 0 genus 1 788 288004 0 species 1 788 Beggiatoa leptomitoformis Francisellaceae 20 15 9047 1 0 family 34064 Francisella 51 8663 12 1 0 genus 262 Francisella halioticida 611 1 species 0 549298 622488 0 species 1 604 Francisella hispaniensis 573569 species 0 1 383 Francisella sp. TX077308 0 species 263 Francisella tularensis 1 2003 2610885 0 no rank 972 2 0 species 1547445 Francisella sp. FSC1006 1 366 475375 species 0 606 1 Francisella sp. MA067296 1 1376 Francisella philomiragia 28110 species 0 1 399 Francisella persica 954 species 0 557 1 Francisella sp. CA97-1460 1542390 species 0 573570 0 species 1 747 Francisella sp. TX077310 657445 0 species 1 960 Francisella noatunensis Allofrancisella 2 364 2 1 0 genus 1869285 Allofrancisella guangzhouensis 1 362 0 species 594679 Enterobacterales 1570 244 373873 1 0 order 91347 22750 14 1 Hafniaceae 64 1903412 0 family 1 11671 3 79 Hafnia 568 genus 0 Hafnia alvei 10892 1 0 species 569 0 no rank 2621980 700 1 1848580 species 0 1 700 Hafnia sp. CBA7124 635 0 genus 10065 8 1 Edwardsiella 681 0 species 93378 Edwardsiella hoshinae 1019 1 2540 2 0 no rank 2676541 Edwardsiella sp. LADL05-105 1 1097 species 0 1650654 1578828 0 species 1 1443 Edwardsiella sp. EA181011 Edwardsiella anguillarum 1 1112 species 0 1821960 Edwardsiella piscicida 1361 1 species 0 1263550 67780 species 0 1 1027 Edwardsiella ictaluri 636 species 0 2325 1 Edwardsiella tarda genus 0 82982 37 Obesumbacterium 1 950 2 913 1 Obesumbacterium proteus 82983 species 0 2 1846 451511 0 no rank Plesiomonas 22 2 1846 1 0 genus 702 species 0 703 Plesiomonas shigelloides 1 1824 1117 2 0 family 1903416 82984 genus 0 1 1117 2 3 Pragia 1 1114 Pragia fontium 82985 0 species family 0 543 1784 Enterobacteriaceae 1 117 213949 158483 0 genus 2 4926 1 Cedecea 4 species 0 158822 Cedecea neteri 1 4922 848 Salmonella 1 3 10594 genus 0 590 1 8473 Salmonella enterica 28901 0 species 1273 1 Salmonella bongori 54736 species 0 544 genus 0 1 22134 14 581 Citrobacter 1508 1 Citrobacter koseri 545 0 species species 0 35703 Citrobacter amalonaticus 2966 1 1344959 species group 0 7 12830 1 2077 Citrobacter braakii 57706 0 species 2077148 0 species 1 903 Citrobacter freundii complex sp. CFNIH4 546 species 0 4406 1 Citrobacter freundii species 0 67827 Citrobacter werkmanii 2180 1 0 species 2077147 Citrobacter freundii complex sp. CFNIH3 1226 1 2077149 species 0 849 1 Citrobacter freundii complex sp. CFNIH9 0 species 2066049 Citrobacter freundii complex sp. CFNIH2 1 1189 no rank 0 2644389 2 2006 1920110 species 0 1089 1 Citrobacter sp. CFNIH10 917 1 Citrobacter sp. FDAARGOS_156 1702170 0 species 0 species 67825 Citrobacter rodentium 1 1262 67824 species 0 981 1 Citrobacter farmeri 0 genus 570 Klebsiella 1091 34664 10 1 species 0 573 Klebsiella pneumoniae 9858 1 0 no rank 2608929 4004 2 2256 1 Klebsiella sp. M5al 1934254 species 0 Klebsiella sp. LTGPAF-6F 1 1748 species 0 1905288 Klebsiella michiganensis 3639 1 species 0 1134687 2913 1 Klebsiella aerogenes 548 0 species 1 1789 Klebsiella quasipneumoniae 1463165 species 0 3226 1 Klebsiella variicola 244366 0 species Klebsiella quasivariicola 1663 1 0 species 2026240 571 0 species 1 6481 Klebsiella oxytoca 1048757 genus 0 1 131 131 1 Candidatus Moranella endobia 1048758 species 0 36866 0 no rank 7168 5 species 0 693444 Enterobacteriaceae bacterium strain FGI 57 1033 1 1 1234 Enterobacteriaceae bacterium ENNIH3 1920128 species 0 2066051 0 species 1 2010 Enterobacteriaceae bacterium ENNIH1 1 1202 Enterobacteriaceae bacterium ENNIH2 1920109 0 species 891974 0 species 1 1689 Plautia stali symbiont 153 Leclercia 1 5171 4 genus 0 83654 0 species 83655 Leclercia adecarboxylata 1 1625 2 3393 no rank 0 2627398 1535 1 Leclercia sp. LSNIH1 1920114 species 0 1 1858 Leclercia sp. LSNIH3 1920116 0 species 1 274 0 genus 409304 274 1 Candidatus Ishikawaella capsulata 168169 species 0 160674 0 genus 3 5070 1 Raoultella 117 54291 0 species 1 3594 Raoultella ornithinolytica 575 species 0 1359 1 Raoultella planticola genus 0 1330547 47 Kosakonia 1 5 6465 1158459 species 0 1 1137 Kosakonia sacchari species 0 208223 Kosakonia cowanii 1808 1 Kosakonia oryzae 1 1699 species 0 497725 species 0 283686 Kosakonia radicincitans 1 1774 620 genus 0 1 4 3901 305 Shigella 1015 1 Shigella flexneri 623 0 species 622 species 0 1462 1 Shigella dysenteriae 0 no rank 2629414 1119 1 0 species 1813821 Shigella sp. PAMC 28760 1 1119 1330545 0 genus 4 4903 1 Lelliottia 69 Lelliottia jeotgali 1 1015 0 species 1907578 Lelliottia amnigena 2284 1 0 species 61646 species 0 69220 Lelliottia nimipressuralis 1 1535 561 0 genus 38286 5 1 Escherichia 174 0 species 562 Escherichia coli 33114 1 species 0 564 Escherichia fergusonii 1172 1 1499973 0 species 1129 1 Escherichia marmotae 208962 0 species 1 2697 Escherichia albertii 3844 18 0 no rank 191675 18 3844 0 clade 84563 0 clade 199891 201 1 1835721 species 0 201 1 secondary endosymbiont of Trabutina mannipara 0 genus 1682492 1 285 Candidatus Tachikawaea gelatinosa 285 1 0 species 1410383 1 250 0 genus 1906657 1778262 0 species 250 1 Candidatus Doolittlea endobia 150 1 0 genus 1906661 species 0 1070130 Candidatus Gullanella endobia 150 1 1906659 genus 0 1 98 2 1 Candidatus Hoaglandella 1 97 Candidatus Hoaglandella endobia 1778263 species 0 0 clade 84564 7 1569 203804 0 genus 7 1569 1 Candidatus Blochmannia 5 Candidatus Blochmannia chromaiodes 1 291 0 species 251542 Candidatus Blochmannia vafer 1 226 0 species 251535 Candidatus Blochmannia floridanus 226 1 species 0 203907 Candidatus Blochmannia pennsylvanicus 310 1 species 0 101534 511 2 no rank 0 711328 species 0 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 291 1 220 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 0 species genus 0 1906660 485 1 1778264 species 0 1 485 Candidatus Mikella endobia 806 4 clade 0 146507 1 224 2 3 Candidatus Hamiltonella 568987 genus 0 0 species 138072 Candidatus Hamiltonella defensa 1 221 secondary endosymbiont of Ctenarytaina eucalypti 226 1 species 0 1199245 secondary endosymbiont of Heteropsylla cubana 1 356 0 species 134287 413496 genus 0 1 11730 8 252 Cronobacter species 0 413503 Cronobacter malonaticus 1315 1 535744 0 species 1 1488 Cronobacter universalis 1 2455 Cronobacter sakazakii 28141 0 species 1 1268 Cronobacter turicensis 413502 species 0 1819 1 Cronobacter dublinensis 413497 species 0 1842 1 Cronobacter muytjensii 413501 0 species 1163710 0 species 1291 1 Cronobacter condimenti 28 Pluralibacter 1 6811 3 genus 0 1330546 0 species 1334193 [Enterobacter] lignolyticus 1 2610 Pluralibacter gergoviae 4173 1 species 0 61647 1132 2 1 Shimwellia 2 1335483 0 genus Shimwellia blattae 1130 1 species 0 563 genus 0 401618 1 278 1 278 Candidatus Riesia pediculicola 401619 species 0 1384 1 genus 0 579 Kluyvera intermedia 1384 1 species 0 61648 547 genus 0 1 22 43299 2091 Enterobacter 12 30236 species group 0 354276 Enterobacter cloacae complex 'Hoffmann cluster IV' 1124 1 0 species 1812935 208224 0 species 1226 1 Enterobacter kobei Enterobacter ludwigii 960 1 species 0 299767 3 3113 2757714 no rank 0 species 0 2027919 Enterobacter cloacae complex bacterium 1205 1 0 species 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 854 1915310 species 0 1 1054 Enterobacter cloacae complex sp. ECNIH7 Enterobacter cloacae 11504 1 0 species 550 species 0 61645 Enterobacter asburiae 1 3905 3 7029 1 Enterobacter hormaechei 4674 158836 0 species Enterobacter xiangfangensis 1 863 subspecies 0 1296536 Enterobacter cloacae complex 'Hoffmann cluster III' 1 1492 subspecies 0 1812934 species 0 69218 Enterobacter cancerogenus 1 1375 10972 9 2608935 0 no rank 1914861 species 0 1 1542 Enterobacter sp. SA187 1129 1 Enterobacter sp. FY-07 1692238 0 species 1 1477 Enterobacter sp. R4-368 1166130 species 0 Enterobacter sp. 638 1186 1 species 0 399742 Enterobacter sp. ODB01 1 1163 species 0 1827481 Enterobacter sp. E20 874 1 species 0 1560339 1868135 0 species 1 933 Enterobacter sp. HK169 1977566 0 species 1340 1 Enterobacter sp. Crenshaw 0 species 2051905 Enterobacter sp. CRENT-193 1 1328 1903409 0 family 31205 28 1 Erwiniaceae 141 551 0 genus 8 6936 1 Erwinia 340 species 0 182337 Erwinia billingiae 1635 1 species 0 79967 Erwinia pyrifoliae 1 789 140 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 species 0 338565 0 species 1 1186 Erwinia tasmaniensis 0 species 1619313 Erwinia gerundensis 1263 1 Erwinia amylovora 729 1 0 species 552 854 1 0 no rank 2622719 Erwinia sp. Ejp617 854 1 species 0 215689 genus 0 53335 625 Pantoea 1 16590 11 1235990 species 0 140 1 Candidatus Pantoea carbekii 1 2830 1654067 species group 0 0 species 549 Pantoea agglomerans 1 2830 Pantoea stewartii 897 1 species 0 66269 0 no rank 2630326 3 5670 Pantoea sp. PSNIH1 1 1659 species 0 1484158 1484157 0 species 1 2157 Pantoea sp. PSNIH2 species 0 592316 Pantoea sp. At-9b 1854 1 species 0 1891675 Pantoea alhagi 1 1296 1 918 Pantoea rwandensis 1076550 species 0 2830 1 Pantoea vagans 470934 0 species species 0 553 Pantoea ananatis 1 1384 32199 0 genus 2951 2 1 Buchnera 7 Buchnera aphidicola 2944 1 species 0 9 2100764 0 genus 3571 2 Pantoea gaviniae 1471 1 0 species 665914 species 0 665913 Pantoea calida 2100 1 51228 0 genus 2 309 1 Wigglesworthia 1 51229 species 0 308 1 Wigglesworthia glossinidia Tatumella 15 707 2 1 0 genus 82986 0 species 53336 Tatumella citrea 1 692 family 0 1903410 184 Pectobacteriaceae 1 20 26209 1 6 9190 300 Pectobacterium 122277 genus 0 1 877 Pectobacterium wasabiae 55208 0 species 1210 1 Pectobacterium parmentieri 1905730 species 0 1674 1 Pectobacterium polaris 2042057 species 0 Pectobacterium carotovorum 1 3721 0 species 554 1 1408 Pectobacterium atrosepticum 29471 0 species 3803 5 1 Sodalis 102 84565 0 genus Candidatus Sodalis pierantonius 1 980 0 species 1486991 1929246 species 0 1 354 Sodalis endosymbiont of Henestaris halophilus 1 1431 Sodalis praecaptivus 1239307 species 0 63612 species 0 1 936 Sodalis glossinidius Brenneria 49 2 1601 1 0 genus 71655 1552 1 Brenneria goodwinii 1109412 0 species genus 0 204037 582 Dickeya 1 6 11431 204042 0 species 1976 1 Dickeya zeae 1 1764 Dickeya fangzhongdai 1778540 species 0 Dickeya dianthicola 1 1910 0 species 204039 1 1846 Dickeya dadantii 204038 species 0 1 3353 Dickeya solani 1089444 species 0 1903411 family 0 1 59801 39 259 Yersiniaceae 52 Chania 1 1124 2 genus 0 1745211 species 0 1639108 Chania multitudinisentens 1 1072 0 genus 613 Serratia 1775 41364 16 1 Serratia plymuthica 1 6178 0 species 82996 61652 0 species 1 1937 Serratia rubidaea 614 species 0 1 1746 Serratia liquefaciens Serratia fonticola 1 3183 0 species 47917 0 species 61651 Serratia ficaria 2217 1 2647522 no rank 0 8 13705 Serratia sp. MYb239 1848 1 species 0 2033438 Serratia sp. AS12 1 1082 species 0 768490 1 2160 Serratia sp. SCBI 488142 species 0 0 species 104623 Serratia sp. ATCC 39006 1 1693 768493 species 0 1082 1 Serratia sp. AS13 Serratia sp. FGI94 2171 1 species 0 671990 Serratia sp. FS14 1 1894 0 species 1327989 1758196 0 species 1775 1 Serratia sp. SSNIH1 0 species 615 Serratia marcescens 9207 1 0 species 28151 Serratia proteamaculans 1416 1 0 genus 929812 Gibbsiella 11 2 1509 1 Gibbsiella quercinecans 1498 1 species 0 929813 Yersinia 193 11069 13 1 0 genus 629 263819 0 species 916 1 Yersinia aleksiciae 712 1 Yersinia rohdei 29485 0 species 0 species 29486 Yersinia ruckeri 966 1 1778 1 Yersinia frederiksenii 29484 0 species 29483 species 0 1 543 Yersinia aldovae 28152 0 species 1176 1 Yersinia kristensenii 631 0 species 1 454 Yersinia intermedia Yersinia enterocolitica 1 1875 species 0 630 1649845 species group 0 2072 3 367190 species 0 1 533 Yersinia similis species 0 633 Yersinia pseudotuberculosis 882 1 Yersinia pestis 657 1 0 species 632 1 384 0 no rank 2653513 Yersinia sp. FDAARGOS_228 384 1 species 0 1839800 1565532 genus 0 1 32 Rouxiella 4444 4 1 Rahnella 97 34037 0 genus 34038 species 0 1 1297 Rahnella aquatilis 2635087 no rank 0 3050 2 Rouxiella sp. ERMR1:05 1820 1 species 0 1805933 Rahnella sp. Y9602 1230 1 species 0 741091 1 21 15426 270 Morganellaceae 1903414 family 0 583 0 genus 3 1798 1 Proteus 17 584 0 species 1262 1 Proteus mirabilis Proteus vulgaris 519 1 species 0 585 37 Morganella 1 2 2799 genus 0 581 0 species 582 Morganella morganii 1 2762 4146 6 1 Xenorhabdus 115 626 0 genus 40576 0 species 1 1243 Xenorhabdus bovienii 1 617 Xenorhabdus poinarii 40577 species 0 351679 0 species 1 520 Xenorhabdus hominickii 628 0 species 1 893 Xenorhabdus nematophila Xenorhabdus doucetiae 1 758 species 0 351671 599 1 637 genus 0 Arsenophonus symbiont of Lipoptena fortisetosa 599 1 0 species 634113 1 4 2187 182 Photorhabdus 29487 genus 0 291112 species 0 522 1 Photorhabdus asymbiotica 574560 species 0 699 1 Photorhabdus temperata species 0 29488 Photorhabdus luminescens 1 784 Providencia 10 4 3627 1 0 genus 586 species 0 587 Providencia rettgeri 589 1 species 0 126385 Providencia alcalifaciens 1447 1 Providencia stuartii 1581 1 species 0 588 45588 70 1 Oceanospirillales 628 135619 0 order 0 family 224379 Hahellaceae 3 1638 3 1 158481 0 genus 2 1635 1 Hahella 8 0 species 158327 Hahella chejuensis 1627 1 1 30 26364 462 Halomonadaceae 28256 family 0 1 1431 2 23 Salinicola 404432 genus 0 species 0 1771309 Salinicola tamaricis 1408 1 17 Chromohalobacter 1 2 1016 genus 0 42054 Chromohalobacter salexigens 1 999 species 0 158080 1 2 1918 3 Cobetia 204286 genus 0 species 0 28258 Cobetia marina 1915 1 376488 genus 0 1 1358 2 14 Halotalea 0 species 376489 Halotalea alkalilenta 1 1344 2745 genus 0 1 16871 15 391 Halomonas 507626 species 0 1295 1 Halomonas chromatireducens 2266 1 Halomonas beimenensis 475662 species 0 0 no rank 2609666 8 8064 Halomonas sp. 'Soap Lake #7' 748 1 0 species 1962264 1971364 0 species 1 625 Halomonas sp. GT species 0 1949203 Halomonas sp. 'Soap Lake #6' 1 748 Halomonas sp. 1513 1 2128 0 species 1883416 species 0 2136172 Halomonas sp. SF2003 1 1155 Halomonas sp. R57-5 919 1 0 species 1610576 0 species 1118153 Halomonas sp. GFAJ-1 745 1 Halomonas sp. KO116 996 1 species 0 1504981 species 0 213554 Halomonas campaniensis 471 1 0 species 1178482 Halomonas huangheensis 1 999 1897729 species 0 1 1945 Halomonas aestuarii Halomonas hydrothermalis 1 1440 species 0 115561 114403 no rank 0 3 282 genus 0 1495768 159 1 Candidatus Evansia muelleri 1 159 species 0 1495769 0 genus 235572 104 1 91844 0 species 1 104 Candidatus Portiera aleyrodidarum 1 19 0 genus 114185 Candidatus Carsonella ruddii 1 19 0 species 114186 504090 genus 0 1 3026 3 21 Kushneria species 0 698828 Kushneria konosiri 1 1367 157779 species 0 1 1638 Kushneria marisflavi 0 family 135620 Oceanospirillaceae 54 13 6230 1 877 2 1 Oleispira 72 188907 0 genus 1 805 Oleispira antarctica 188908 species 0 2 Thalassolituus 1 2 768 genus 0 187492 Thalassolituus oleivorans 766 1 0 species 187493 1 911 2 2 Bacterioplanes 1537406 genus 0 1249553 0 species 1 909 Bacterioplanes sanyensis Marinomonas 81 4 1921 1 0 genus 28253 0 species 936476 Marinomonas posidonica 1 721 119864 species 0 642 1 Marinomonas mediterranea 0 no rank 196814 477 1 species 0 400668 Marinomonas sp. MWYL1 477 1 48075 0 genus 1699 2 1 Marinobacterium 29 1670 1 Marinobacterium aestuarii 1821621 0 species 3 733 1 Oleiphilaceae 13 191033 0 family Oleiphilus 12 2 720 1 0 genus 141450 708 1 Oleiphilus messinensis 141451 0 species 1 1688 5 6 Saccharospirillaceae 255527 family 0 1445504 genus 0 1 2 1094 10 Gynuella 0 species 1445505 Gynuella sunshinyii 1 1084 5 Reinekea 1 2 588 genus 0 230494 0 species 1336806 Reinekea forsetii 1 583 1920240 family 0 1 6 2026 4 Kangiellaceae 261963 genus 0 1 2022 5 90 Kangiella Kangiella profundi 1 607 0 species 1561924 331 1 Kangiella sediminilitoris 1144748 species 0 0 species 914150 Kangiella geojedonensis 430 1 Kangiella koreensis 564 1 0 species 261964 Alcanivoracaceae 72 9 6281 1 0 family 224372 1 2 749 3 Ketobacter 2025617 genus 0 1 746 Ketobacter alkanivorans 1917421 species 0 0 genus 59753 Alcanivorax 72 5460 6 1 59754 0 species 447 1 Alcanivorax borkumensis 2638842 no rank 0 451 1 1113728 species 0 1 451 Alcanivorax sp. NBRC 101098 1094342 species 0 1160 1 Alcanivorax xenomutans 285091 species 0 1 1426 Alcanivorax dieselolei Alcanivorax pacificus 1904 1 species 0 1306787 Immundisolibacterales 39 2398 4 1 0 order 1934945 1934946 0 family 3 2359 1 Immundisolibacteraceae 54 22 Immundisolibacter 1 2305 2 genus 0 1934947 1810504 0 species 2283 1 Immundisolibacter cernigliae 189 Alteromonadales 1 66337 106 order 0 135622 0 family 267893 Idiomarinaceae 7 6 1732 1 genus 0 135575 8 Idiomarina 1 5 1725 2 1025 no rank 0 2614829 2100422 0 species 640 1 Idiomarina sp. OT37-5b 385 1 Idiomarina sp. X4 2055892 species 0 313 1 Idiomarina piscisalsi 1096243 0 species species 0 135577 Idiomarina loihiensis 1 379 Colwelliaceae 16 4337 9 1 0 family 267889 1 6 3722 10 Colwellia 28228 genus 0 no rank 0 196834 2493 3 0 species 1816219 Colwellia sp. PAMC 21821 894 1 Colwellia sp. MT41 1125 1 0 species 58049 474 1 Colwellia sp. PAMC 20917 1816218 0 species species 0 1967665 Colwellia beringensis 643 1 576 1 Colwellia psychrerythraea 28229 species 0 genus 0 1518149 8 Thalassotalea 1 2 599 1763536 species 0 591 1 Thalassotalea crassostreae 0 family 267894 Psychromonadaceae 2 4 1115 1 0 genus 67572 Psychromonas 5 3 1113 1 700 1 Psychromonas ingrahamii 357794 species 0 408 1 0 no rank 2614957 0 species 314282 Psychromonas sp. CNPT3 408 1 1 1971 3 8 Ferrimonadaceae 267892 family 0 2 1963 1 Ferrimonas 232 44011 0 genus 1 1731 Ferrimonas balearica 44012 species 0 0 family 267890 Shewanellaceae 87 25 18791 1 18704 24 1 Shewanella 543 22 0 genus 0 species 70864 Shewanella pealeana 674 1 192073 species 0 1 595 Shewanella denitrificans Shewanella loihica 1400 1 0 species 359303 1597 1 Shewanella baltica 62322 species 0 643 1 Shewanella frigidimarina 56812 0 species Shewanella putrefaciens 777 1 0 species 24 93973 0 species 489 1 Shewanella japonica 1 1173 Shewanella amazonensis 60478 species 0 1071 1 Shewanella halifaxensis 271098 0 species 60217 0 species 1 720 Shewanella violacea Shewanella oneidensis 1 1013 species 0 70863 1 753 Shewanella psychrophila 225848 0 species 271097 0 species 1 1048 Shewanella sediminis 0 species 404011 Shewanella piezotolerans 674 1 513 1 Shewanella bicestrii 2018305 0 species species 0 260364 Shewanella marisflavi 612 1 3478 6 0 no rank 196818 Shewanella sp. W3-18-1 614 1 0 species 351745 0 species 60481 Shewanella sp. MR-7 388 1 species 0 2059264 Shewanella sp. Pdp11 1 835 94122 0 species 1 764 Shewanella sp. ANA-3 Shewanella sp. MR-4 1 508 species 0 60480 2029986 species 0 369 1 Shewanella sp. WE21 Shewanella woodyi 1 931 0 species 60961 1 3 732 1 Moritellaceae 267891 family 0 58050 genus 0 1 2 731 12 Moritella 719 1 Moritella viscosa 80854 0 species 14790 25 1 Pseudoalteromonadaceae 68 267888 0 family 14722 24 1 Pseudoalteromonas 1024 53246 0 genus Pseudoalteromonas atlantica 1 976 species 0 288 267375 0 species 263 1 Pseudoalteromonas marina Pseudoalteromonas espejiana 446 1 0 species 28107 1 618 Pseudoalteromonas aliena 247523 0 species 704 1 Pseudoalteromonas piscicida 43662 0 species 1 1221 Pseudoalteromonas luteoviolacea 43657 species 0 Pseudoalteromonas piratica 796 1 species 0 1348114 342 1 Pseudoalteromonas nigrifaciens 28109 species 0 1270 1 Pseudoalteromonas spongiae 298657 0 species 228 species 0 1 227 Pseudoalteromonas haloplanktis species 0 152297 Pseudoalteromonas issachenkonii 1 312 0 species 394751 Pseudoalteromonas arctica 828 1 Pseudoalteromonas translucida 313 1 0 species 166935 194690 0 no rank 2619 5 1 376 Pseudoalteromonas sp. SM9913 234831 0 species 697 1 Pseudoalteromonas sp. NC201 1514074 species 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 520 1 species 0 1720343 Pseudoalteromonas sp. Bsw20308 1 672 0 species 283699 354 1 Pseudoalteromonas sp. 13-15 1761891 species 0 species 0 314281 Pseudoalteromonas tunicata 1 613 Pseudoalteromonas phenolica 598 1 species 0 161398 Pseudoalteromonas tetraodonis 401 1 species 0 43659 0 species 43658 Pseudoalteromonas rubra 712 1 176102 species 0 439 1 Pseudoalteromonas agarivorans family 0 72275 64 Alteromonadaceae 1 22680 30 261825 0 genus 1262 2 1 Agarivorans 15 species 0 680279 Agarivorans gilvus 1247 1 0 genus 1621534 Paraglaciecola 11 2 1251 1 1 1240 Paraglaciecola psychrophila 326544 species 0 2 1032 1 Lacimicrobium 9 1751872 0 genus species 0 1526571 Lacimicrobium alkaliphilum 1 1023 49 Alteromonas 1 10 6618 genus 0 226 3 1596 no rank 0 2614992 2058133 0 species 718 1 Alteromonas sp. MB-3u-76 Alteromonas sp. RW2A1 1 381 0 species 1917158 1 497 Alteromonas sp. Mac1 1777491 species 0 489 1 Alteromonas addita 287094 species 0 1003 1 Alteromonas mediterranea 314275 0 species species 0 28108 Alteromonas macleodii 1899 1 Alteromonas naphthalenivorans 1 561 species 0 715451 Alteromonas australica 447 1 0 species 589873 0 species 233316 Alteromonas stellipolaris 574 1 Marinobacter 291 10 10949 1 0 genus 2742 0 no rank 83889 3191 3 Marinobacter sp. LQ44 1506 1 0 species 1749259 1671721 0 species 1093 1 Marinobacter sp. CP1 0 species 490759 Marinobacter sp. BSs20148 1 592 1002 1 Marinobacter salinus 1874317 species 0 species 0 330734 Marinobacter psychrophilus 588 1 1 1012 Marinobacter adhaerens 1033846 0 species 1420917 0 species 1 1476 Marinobacter salarius 1431 1 Marinobacter similis 1420916 0 species 0 species 2743 Marinobacter hydrocarbonoclasticus 1 1958 3 Glaciecola 1 1504 3 genus 0 89404 no rank 0 2618684 1 560 560 1 Glaciecola sp. 4H-3-7+YE-5 983545 0 species 941 1 Glaciecola nitratireducens 300231 species 0 1775403 0 order 4 1192 1 Nevskiales 12 2 1156 family 0 2689614 1 1156 2 13 Steroidobacter 469322 genus 0 species 0 465721 Steroidobacter denitrificans 1143 1 24 1 Sinobacteraceae 568386 0 family order 0 72274 1139 Pseudomonadales 1 241943 129 1 86 209562 1405 Pseudomonadaceae 135621 family 0 3 5711 351 subfamily 0 1 3 5711 50 Azotobacter 352 genus 0 1 2283 Azotobacter vinelandii 354 0 species 0 species 353 Azotobacter chroococcum 3378 1 697 2 1 Oblitimonas 1 1849530 0 genus 696 1 Oblitimonas alkaliphila 1697053 species 0 genus 0 286 6957 Pseudomonas 1 201749 80 0 species 237610 Pseudomonas psychrotolerans 1 1867 species 0 930166 Pseudomonas brassicacearum 2861 1 0 species group 136845 6 28498 76759 species 0 1 3829 Pseudomonas monteilii 0 species 47885 Pseudomonas oryzihabitans 1 1632 Pseudomonas putida 1 16458 species 0 303 0 species 70775 Pseudomonas plecoglossicida 1163 1 Pseudomonas mosselii 1 3078 species 0 78327 1 2338 Pseudomonas fulva 47880 species 0 8 18890 136849 0 species group 2775504 0 no rank 833 1 1206777 0 species 1 833 Pseudomonas sp. Lz4W species 0 36746 Pseudomonas cichorii 1 1111 Pseudomonas viridiflava 1353 1 0 species 33069 Pseudomonas syringae group genomosp. 3 1 2602 0 species 251701 2 3081 251698 species subgroup 0 29438 0 species 1 1623 Pseudomonas savastanoi 47877 species 0 1458 1 Pseudomonas amygdali Pseudomonas avellanae 1 1368 species 0 46257 1 8542 251695 species subgroup 0 species 0 317 Pseudomonas syringae 8542 1 27994 9 0 species group 136843 species 0 75612 Pseudomonas mandelii 1244 1 Pseudomonas protegens 1 2260 species 0 380021 Pseudomonas poae 1353 1 0 species 200451 species 0 76758 Pseudomonas orientalis 1174 1 76761 0 species 1 1095 Pseudomonas veronii 0 species 47878 Pseudomonas azotoformans 1 2238 15668 1 Pseudomonas fluorescens 294 0 species 200450 species 0 1763 1 Pseudomonas trivialis 47879 0 species 1 1199 Pseudomonas corrugata 196821 no rank 0 30 41675 1768 1 Pseudomonas sp. SWI36 2083052 species 0 2069256 species 0 1 1352 Pseudomonas sp. XWY-1 species 0 1028989 Pseudomonas sp. StFLB209 1493 1 species 0 1500687 Pseudomonas sp. St29 1 1418 species 0 2049589 Pseudomonas sp. HLS-6 850 1 1659194 0 species 1416 1 Pseudomonas sp. GR 6-02 1636610 0 species 1 1331 Pseudomonas sp. PONIH3 1 1094 Pseudomonas sp. FDAARGOS_380 2018067 0 species 1 2508 Pseudomonas sp. ATCC 13867 1294143 species 0 species 0 69328 Pseudomonas sp. VLB120 1 1410 1014 1 Pseudomonas sp. SWI6 2083051 0 species 0 species 1259844 Pseudomonas sp. FGI182 1 1261 1649877 species 0 1592 1 Pseudomonas sp. CCOS 191 species 0 1534110 Pseudomonas sp. DR 5-09 1091 1 0 species 1500686 Pseudomonas sp. Os17 1 1558 2067572 species 0 1321 1 Pseudomonas sp. NC02 Pseudomonas sp. LG1D9 1 1071 species 0 2083054 1415630 0 species 1088 1 Pseudomonas sp. TKP Pseudomonas sp. CC6-YY-74 1 1364 0 species 1930532 species 0 1827300 Pseudomonas sp. MYb193 1 876 species 0 1898684 Pseudomonas sp. LPH1 1 1788 1207075 0 species 1 1044 Pseudomonas sp. UW4 Pseudomonas sp. MRSN12121 1746 1 0 species 1611770 species 0 2083053 Pseudomonas sp. SWI44 1155 1 1155 1 Pseudomonas sp. M30-35 1981174 species 0 1283291 0 species 2161 1 Pseudomonas sp. URMO17WK12:I11 Pseudomonas sp. LH1G9 1 1023 species 0 2083055 Pseudomonas sp. TCU-HL1 1898 1 species 0 1856685 1931241 0 species 1 1303 Pseudomonas sp. S-6-2 species 0 1338689 Pseudomonas sp. JY-Q 1526 1 6 26861 136841 0 species group 53408 species 0 4611 1 Pseudomonas citronellolis 1 2047 Pseudomonas resinovorans 53412 0 species 9246 1 Pseudomonas aeruginosa 287 species 0 1 6788 Pseudomonas mendocina 300 species 0 1898 1 Pseudomonas alcaligenes 43263 species 0 0 species subgroup 1232139 1 2271 1149133 0 species 2271 1 Pseudomonas furukawaii 198620 0 species 1 2175 Pseudomonas koreensis 1 1251 Pseudomonas silesiensis 1853130 species 0 species 0 65741 Pseudomonas knackmussii 2506 1 101564 species 0 1 1609 Pseudomonas alcaliphila 0 species group 136842 10597 2 Pseudomonas chlororaphis 8450 1 species 0 587753 296 species 0 1 2147 Pseudomonas fragi 1436 1 Pseudomonas cerasi 1583341 0 species 12894 2 136846 species group 0 1 10813 578833 0 species subgroup 316 species 0 1 10813 Pseudomonas stutzeri 74829 species 0 1 2081 Pseudomonas balearica 1143 1 Pseudomonas antarctica 219572 0 species 1 1203 Pseudomonas alkylphenolica 237609 0 species 157782 species 0 1 2159 Pseudomonas parafulva 244566 species 0 1042 1 Pseudomonas lurida 216142 species 0 1 1315 Pseudomonas rhizosphaerae 1 2767 Pseudomonas frederiksbergensis 104087 species 0 1539 1 Pseudomonas cremoricolorata 157783 0 species 1788301 0 species 1221 1 Pseudomonas versuta Pseudomonas entomophila 1289 1 0 species 312306 Moraxellaceae 77 42 31242 1 0 family 468 Acinetobacter 172 25 20013 1 0 genus 469 4233 7 196816 0 no rank Acinetobacter sp. NCu2D-2 998 1 0 species 1608473 Acinetobacter sp. ACNIH1 1 657 0 species 1636603 259 1 Acinetobacter sp. ACNIH2 1758189 0 species 1 977 Acinetobacter sp. LoGeW2-3 1808001 0 species 545 1 Acinetobacter sp. TGL-Y2 1407071 species 0 species 0 2079596 Acinetobacter sp. SWBY1 1 354 1646498 species 0 1 443 Acinetobacter sp. TTH0-4 712 1 Acinetobacter indicus 756892 species 0 0 species 1324350 Acinetobacter equi 1 590 106648 species 0 1534 1 Acinetobacter bereziniae 108981 0 species 1 714 Acinetobacter schindleri 890 1 202950 species 0 0 strain 62977 Acinetobacter sp. ADP1 1 890 29430 0 species 595 1 Acinetobacter haemolyticus 40216 species 0 1 476 Acinetobacter radioresistens 1 391 Acinetobacter johnsonii 40214 0 species 0 species 1789224 Acinetobacter larvae 1 579 Acinetobacter soli 430 1 species 0 487316 909768 0 species group 5 7333 471 species 0 1 1392 Acinetobacter calcoaceticus Acinetobacter pittii 2482 1 0 species 48296 362 1 Acinetobacter lactucae 1785128 0 species 106654 species 0 760 1 Acinetobacter nosocomialis 1 2337 Acinetobacter baumannii 470 species 0 40215 0 species 788 1 Acinetobacter junii 1 576 Acinetobacter oleivorans 1148157 species 0 1 11 5509 96 Psychrobacter 497 genus 0 Psychrobacter arcticus 1 893 species 0 334543 45610 species 0 1 313 Psychrobacter urativorans 2637 6 196806 no rank 0 503 1 Psychrobacter sp. PRwf-1 349106 species 0 1720344 0 species 467 1 Psychrobacter sp. AntiMn-1 Psychrobacter sp. G 1 501 0 species 571800 species 0 1028416 Psychrobacter sp. DAB_AL43B 552 1 species 0 1699622 Psychrobacter sp. P2G3 1 264 1699624 species 0 1 350 Psychrobacter sp. P11G5 species 0 261164 Psychrobacter alimentarius 1 746 1 824 Psychrobacter cryohalolentis 330922 0 species 475 genus 0 1 5 5643 922 Moraxella Moraxella catarrhalis 435 1 0 species 480 Moraxella bovoculi 2074 1 0 species 386891 34062 0 species 1 1670 Moraxella osloensis 1 542 Moraxella ovis 29433 species 0 0 order 1240482 5 2132 1 Orbaceae 1 2132 5 family 0 1240483 0 genus 1193503 Gilliamella 1 1497 2 1 Gilliamella apicola 1 1496 species 0 1196095 genus 0 1335631 34 Frischella 1 634 2 Frischella perrara 600 1 0 species 1267021 12 8339 1 Methylococcales 82 135618 0 order Methylococcaceae 148 8257 11 1 0 family 403 genus 0 416 69 Methylomonas 1 5 5051 1 1530 Methylomonas koyamae 702114 species 0 species 0 421 Methylomonas methanica 1057 1 0 species 1538553 Methylomonas denitrificans 922 1 1473 1 0 no rank 2608980 0 species 1727196 Methylomonas sp. DH-1 1 1473 1 769 genus 0 39773 1 769 Methylomicrobium alcaliphilum 271065 species 0 0 genus 413 Methylococcus 5 2 1665 1 414 0 species 1660 1 Methylococcus capsulatus 6 Methylovulum 1 2 624 genus 0 762296 species 0 1704499 Methylovulum psychrotolerans 1 618 6 3199 1 Acidiferrobacterales 65 1692040 0 order Acidiferrobacteraceae 43 3134 5 1 0 family 1692041 16 Sulfuricaulis 1 2 1625 genus 0 1744881 1620215 species 0 1 1609 Sulfuricaulis limicola genus 0 1692042 53 Sulfurifustis 1 1466 2 0 species 1675686 Sulfurifustis variabilis 1413 1 135614 0 order 54 92726 1 Xanthomonadales 932 1 14 16067 174 Rhodanobacteraceae 1775411 family 0 genus 0 75309 36 Rhodanobacter 1 2222 2 666685 0 species 1 2186 Rhodanobacter denitrificans 70411 genus 0 1 2 1464 5 Frateuria 1459 1 Frateuria aurantia 81475 species 0 genus 0 242605 30 Luteibacter 1 1585 2 1555 1 Luteibacter rhizovicinus 242606 species 0 231454 genus 0 1 4 7316 128 Dyella 0 species 1379159 Dyella jiangningensis 1 1950 2493 1 Dyella thiooxydans 445710 0 species 1 2745 Dyella japonica 231455 0 species 323413 0 genus 2 2309 1 Dokdonella 33 species 0 323415 Dokdonella koreensis 1 2276 2233801 genus 0 1 997 2021234 species 0 1 997 Xanthomonadales bacterium D13 Xanthomonadaceae 839 75727 39 1 0 family 32033 Xylella 1 2 667 1 0 genus 2370 Xylella fastidiosa 1 666 species 0 2371 0 genus 338 Xanthomonas 1457 17 29901 1 910 1 Xanthomonas vasicola 56459 species 0 1 1524 Xanthomonas perforans 442694 species 0 0 species 343 Xanthomonas translucens 2820 1 0 species 56460 Xanthomonas vesicatoria 1 1241 1584 1 Xanthomonas hortorum 56454 0 species Xanthomonas fragariae 1 815 0 species 48664 Xanthomonas campestris 4208 1 species 0 339 1 983 Xanthomonas phaseoli 1985254 0 species 456327 0 species 1244 1 Xanthomonas euvesicatoria 1103 1 Xanthomonas alfalfae 366650 0 species 1 1148 Xanthomonas albilineans 29447 species 0 2625 1 Xanthomonas sacchari 56458 species 0 0 species group 643453 5042 2 Xanthomonas fuscans 1397 1 0 species 366648 Xanthomonas citri 3645 1 species 0 346 0 species 347 Xanthomonas oryzae 1 2290 907 1 Xanthomonas axonopodis 53413 0 species 0 genus 83614 Luteimonas 17 2 1475 1 1458 1 Luteimonas sp. 100111 2006110 species 0 genus 0 83618 157 Pseudoxanthomonas 1 5999 3 314722 species 0 4137 1 Pseudoxanthomonas suwonensis 1 1705 Pseudoxanthomonas spadix 415229 species 0 0 genus 40323 Stenotrophomonas 674 26547 9 1 216778 0 species 1 1668 Stenotrophomonas rhizophila 196198 0 no rank 7151 4 Stenotrophomonas sp. MYb57 1 1842 species 0 1827305 1787 1 Stenotrophomonas sp. WZN-1 2005046 0 species Stenotrophomonas sp. KCTC 12332 1 1638 species 0 1793721 1904944 species 0 1884 1 Stenotrophomonas sp. LM091 128780 species 0 1 3337 Stenotrophomonas acidaminiphila 83617 species 0 1691 1 Stenotrophomonas nitritireducens 0 species group 995085 1 12026 Stenotrophomonas maltophilia 12026 1 species 0 40324 10299 5 1 Lysobacter 138 68 0 genus Lysobacter gummosus 1 2226 0 species 262324 2586 1 Lysobacter antibioticus 84531 0 species 435897 0 species 1 2900 Lysobacter capsici Lysobacter enzymogenes 1 2449 species 0 69 28216 0 class 557846 351 1 Betaproteobacteria 1150 1 235 452913 5400 Burkholderiales 80840 order 0 80864 family 0 1 59 108513 2020 Comamonadaceae 0 genus 219181 Ottowia 68 3 4603 1 1 2246 0 no rank 2645081 1658672 species 0 1 2246 Ottowia sp. oral taxon 894 species 0 2109914 Ottowia sp. KADR8-3 2289 1 0 genus 52972 Polaromonas 26 3 3921 1 Polaromonas naphthalenivorans 1 2072 0 species 216465 2638319 no rank 0 1823 1 species 0 296591 Polaromonas sp. JS666 1823 1 0 genus 201096 Alicycliphilus 24 3434 2 1 species 0 179636 Alicycliphilus denitrificans 3410 1 80865 genus 0 1 5 14259 500 Delftia 0 species 180282 Delftia tsuruhatensis 3304 1 7291 2 2613839 0 no rank 742013 species 0 1 3538 Delftia sp. Cs1-4 1920191 species 0 3753 1 Delftia sp. HK171 Delftia acidovorans 1 3164 0 species 80866 28065 genus 0 1 7170 5 50 Rhodoferax 1 2573 Rhodoferax koreense 1842727 species 0 0 species 81479 Rhodoferax antarcticus 1 1457 1692 1 Rhodoferax saidenbachensis 1484693 species 0 1398 1 Rhodoferax ferrireducens 192843 0 species 2 1802 1 Simplicispira 18 352450 0 genus 1 1784 Simplicispira sp. SC1-8 2109915 species 0 0 genus 2678886 1 2540 0 species 2116657 Melaminivora sp. SC2-7 2540 1 Verminephrobacter 15 2080 2 1 0 genus 364316 1 2065 Verminephrobacter eiseniae 364317 species 0 Limnohabitans 18 1870 3 1 0 genus 665874 0 no rank 2626134 2 1852 species 0 1678129 Limnohabitans sp. 103DPR2 1 564 1678128 species 0 1288 1 Limnohabitans sp. 63ED37-2 genus 0 174951 44 Ramlibacter 1 5453 2 Ramlibacter tataouinensis 1 5409 0 species 94132 genus 0 238749 21 Diaphorobacter 1 2302 2 1546149 species 0 2281 1 Diaphorobacter polyhydroxybutyrativorans 883 2 1 Candidatus Symbiobacter 1 1436289 0 genus Candidatus Symbiobacter mobilis 1 882 0 species 1436290 1649468 0 genus 2 2993 1 Melaminivora 94 2899 1 0 no rank 2641902 2109913 species 0 2899 1 Melaminivora sp. SC2-9 0 genus 2490452 3255 2 1458425 0 species 1521 1 Comamonadaceae bacterium A1 1458426 0 species 1734 1 Comamonadaceae bacterium B1 12916 genus 0 1 9 18264 897 Acidovorax 80867 species 0 1 2203 Acidovorax avenae species 0 80869 Acidovorax citrulli 1 2178 0 species 721785 Acidovorax ebreus 1736 1 9492 4 2684926 no rank 0 Acidovorax sp. T1 2316 1 species 0 1858609 232721 0 species 1 2126 Acidovorax sp. JS42 1 2452 Acidovorax sp. RAC01 1842533 0 species 2598 1 Acidovorax sp. KKS102 358220 species 0 1 1758 Acidovorax sp. NA3 553814 0 species 0 genus 34072 Variovorax 375 16392 5 1 Variovorax paradoxus 7895 1 species 0 34073 5038 2 0 no rank 663243 Variovorax sp. PAMC 28711 1 1501 species 0 1795631 species 0 2126319 Variovorax sp. PMC12 1 3537 Variovorax boronicumulans 1 3084 0 species 436515 Hydrogenophaga 71 4 6171 1 0 genus 47420 Hydrogenophaga crassostreae 1160 1 species 0 1763535 2 4940 0 no rank 2610897 795665 species 0 1 2776 Hydrogenophaga sp. PBC species 0 1842537 Hydrogenophaga sp. RAC07 1 2164 0 genus 283 Comamonas 40 9101 4 1 1868 1 Comamonas kerstersii 225992 species 0 Comamonas serinivorans 1 2217 species 0 1082851 285 0 species 4976 1 Comamonas testosteroni 119060 0 family 84 171219 1 Burkholderiaceae 1241 48736 0 genus 5 19597 1 Ralstonia 538 0 species 305 Ralstonia solanacearum 1 9116 3123 1 Ralstonia mannitolilytica 105219 0 species Ralstonia pickettii 4111 1 species 0 329 0 species 190721 Ralstonia insidiosa 2709 1 1 1936 1827195 genus 0 1936 1 Burkholderia sp. RPE64 758793 species 0 4303 Burkholderia 1 41 85742 genus 0 32008 15707 11 0 no rank 2613784 1795874 0 species 1 1029 Burkholderia sp. PAMC 28687 Burkholderia sp. YI23 1824 1 species 0 1097668 Burkholderia sp. PAMC 26561 1034 1 species 0 1795043 Burkholderia sp. Bp7605 1238 1 0 species 1740163 1520 1 Burkholderia sp. CCGE1001 640510 species 0 0 species 758796 Burkholderia sp. RPE67 1 1818 1 2037 Burkholderia sp. HB1 1678678 species 0 Burkholderia sp. KJ006 1348 1 0 species 416344 Burkholderia sp. CCGE1003 1669 1 0 species 640512 Burkholderia sp. 2002721687 1 1154 0 species 1468409 1740162 0 species 1 1036 Burkholderia sp. Bp5365 2192 1 Burkholderia plantarii 41899 0 species species 0 337 Burkholderia glumae 1 3880 0 species group 87882 19 43150 1 3128 Burkholderia multivorans 87883 0 species 1 1001 Burkholderia metallica 488729 species 0 Burkholderia cepacia 7251 1 0 species 292 1207504 species 0 1518 1 Burkholderia pseudomultivorans species 0 101571 Burkholderia ubonensis 1 3972 1332 1 [Pseudomonas] mesoacidophila 265293 species 0 2191 1 Burkholderia stabilis 95485 0 species species 0 152480 Burkholderia ambifaria 1 1789 Burkholderia territorii 1 865 0 species 1503055 1150 1 Burkholderia pyrrocinia 60550 species 0 Burkholderia vietnamiensis 2079 1 species 0 60552 Burkholderia seminalis 1220 1 species 0 488731 95486 species 0 1 7128 Burkholderia cenocepacia 0 species 488732 Burkholderia diffusa 856 1 2370 1 Burkholderia lata 482957 0 species 488447 species 0 1619 1 Burkholderia contaminans 152500 species 0 1 1096 Burkholderia dolosa Burkholderia stagnalis 1 1332 species 0 1503054 species 0 488446 Burkholderia latens 1253 1 12438 7 111527 0 species group species 0 57975 Burkholderia thailandensis 3095 1 13373 0 species 1 1078 Burkholderia mallei Burkholderia sp. MSMB617WGS 1 1132 species 0 1637831 Burkholderia sp. MSMB0852 1052 1 species 0 1637841 1637837 species 0 1282 1 Burkholderia sp. MSMB0266 28450 species 0 1 3213 Burkholderia pseudomallei 342113 0 species 1586 1 Burkholderia oklahomensis species 0 28095 Burkholderia gladioli 1 4072 Cupriavidus 850 9 24545 1 0 genus 106589 0 species 106590 Cupriavidus necator 4586 1 species 0 367825 Cupriavidus sp. USMAA1020 3387 1 2640874 0 no rank 2 6714 1 3441 Cupriavidus sp. USMAA2-4 876364 0 species 1389192 species 0 1 3273 Cupriavidus sp. USMAHM13 Cupriavidus pinatubonensis 2141 1 species 0 248026 82541 species 0 1 2250 Cupriavidus gilardii Cupriavidus basilensis 2747 1 0 species 68895 1 1870 Cupriavidus metallidurans 119219 species 0 0 genus 93217 Pandoraea 230 13493 10 1 species 0 93220 Pandoraea pnomenusa 1365 1 species 0 93218 Pandoraea apista 1 1613 Pandoraea norimbergensis 1508 1 0 species 93219 Pandoraea oxalativorans 1811 1 0 species 573737 0 species 93222 Pandoraea sputorum 1349 1 0 species 656179 Pandoraea faecigallinarum 1324 1 species 0 93221 Pandoraea pulmonicola 1297 1 445709 0 species 1285 1 Pandoraea thiooxydans 656178 species 0 1711 1 Pandoraea vervacti 44013 0 genus 4 2151 1 Polynucleobacter 8 576611 species 0 1 901 Polynucleobacter asymbioticus Polynucleobacter duraquae 1 571 0 species 1835254 Polynucleobacter necessarius 1 671 species 0 576610 12 21825 1 Paraburkholderia 406 1822464 0 genus Paraburkholderia aromaticivorans 2097 1 0 species 2026199 169430 0 species 2067 1 Paraburkholderia hospita 948107 species 0 1 1787 Paraburkholderia sprentiae 311230 0 species 1510 1 Paraburkholderia terrae 261302 species 0 1 1907 Paraburkholderia phytofirmans 2150 1 Paraburkholderia xenovorans 36873 species 0 1684 1 0 no rank 2615204 1684 1 Paraburkholderia sp. SOS3 1926494 species 0 0 species 148447 Paraburkholderia phymatum 1 1982 2590 1 Paraburkholderia caribensis 75105 species 0 species 0 252970 Paraburkholderia phenoliruptrix 1709 1 134537 species 0 1936 1 Paraburkholderia fungorum 1 689 0 genus 2571159 689 1 Paraburkholderia rhizoxinica 412963 0 species 9187 2 80841 no rank 0 1469502 0 species 1119 1 Burkholderiales bacterium GJ-E10 8068 1 Burkholderiales bacterium YL45 1834205 0 species 0 family 506 Alcaligenaceae 563 43 81493 1 1 Paenalcaligenes 1 2 614 genus 0 1100891 613 1 Paenalcaligenes hominis 643674 species 0 517 genus 0 1 17 37077 1168 Bordetella species 0 94624 Bordetella petrii 1 1956 1 1013 Bordetella holmesii 35814 0 species species 0 463014 Bordetella flabilis 1 2100 species 0 519 Bordetella parapertussis 2520 1 1818 1 Bordetella trematum 123899 0 species species 0 520 Bordetella pertussis 1834 1 0 species 1416803 Bordetella genomosp. 9 1954 1 2630031 0 no rank 2351 1 1697043 0 species 1 2351 Bordetella sp. H567 1 1183 Bordetella avium 521 species 0 1331258 species 0 2412 1 Bordetella pseudohinzii 1 4711 Bordetella bronchiseptica 518 species 0 Bordetella genomosp. 8 1 2160 0 species 1416806 Bordetella genomosp. 13 1 2480 species 0 463040 Bordetella hinzii 2514 1 species 0 103855 2562 1 Bordetella bronchialis 463025 0 species species 0 463024 Bordetella genomosp. 6 1 2341 Taylorella 5 3 518 1 0 genus 29574 1 255 Taylorella equigenitalis 29575 0 species species 0 84590 Taylorella asinigenitalis 258 1 6 Pusillimonas 1 2 785 genus 0 305976 2640016 no rank 0 779 1 1007105 0 species 779 1 Pusillimonas sp. T7-7 genus 0 359336 65 Castellaniella 1 2 2519 0 species 75697 Castellaniella defragrans 1 2454 Orrella 51 2 2960 1 0 genus 1921582 1851544 species 0 2909 1 Orrella dioscoreae Alcaligenes 45 2 2844 1 0 genus 507 2799 1 Alcaligenes faecalis 511 0 species 7 Advenella 1 1872 3 genus 0 290425 Advenella kashmirensis 735 1 species 0 310575 1 1130 Advenella mimigardefordensis 302406 species 0 90243 genus 0 1 2 724 8 Oligella 0 species 90245 Oligella urethralis 716 1 1 924 1472344 0 genus 0 species 1472345 Basilea psittacipulmonis 924 1 222 genus 0 1 6 30093 897 Achromobacter species 0 217203 Achromobacter spanius 1 5361 Achromobacter insolitus 2395 1 species 0 217204 Achromobacter xylosoxidans 1 11731 0 species 85698 species 0 32002 Achromobacter denitrificans 6475 1 3234 1 2626865 no rank 0 1758194 0 species 3234 1 Achromobacter sp. AONIH1 family 0 75682 450 Oxalobacteraceae 1 50810 29 0 genus 149698 Massilia 287 6 15477 1 3472 1 Massilia sp. ZMN-3 2072590 0 species 6085 2 2609279 0 no rank 1707785 0 species 2606 1 Massilia sp. WG5 Massilia sp. NR 4-1 1 3479 species 0 1678028 1 2482 Massilia sp. B2 2045208 0 species 0 species 1141883 Massilia putida 3151 1 Collimonas 146 7762 4 1 0 genus 202907 Collimonas fungivorans 1 2237 species 0 158899 Collimonas arenae 1 2617 0 species 279058 species 0 279113 Collimonas pratensis 1 2762 963 genus 0 1 12457 6 328 Herbaspirillum 80842 0 species 1 2337 Herbaspirillum rubrisubalbicans Herbaspirillum frisingense 3274 1 species 0 92645 2624150 0 no rank 1 1453 0 species 2025949 Herbaspirillum sp. meg3 1 1453 1 3328 Herbaspirillum seropedicae 964 0 species 0 species 341045 Herbaspirillum hiltneri 1737 1 1428 3 1 Herminiimonas 14 303379 0 genus 694 1 Herminiimonas arsenitoxidans 1809410 species 0 0 species 204773 Herminiimonas arsenicoxydans 1 720 1 Oxalobacter 1 2 1710 genus 0 846 1709 1 Oxalobacter formigenes 847 0 species genus 0 29580 308 Janthinobacterium 1 7 11526 7101 4 no rank 0 2610881 Janthinobacterium sp. LM6 1 2175 0 species 1938606 3104 1 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 0 species 1 861 Janthinobacterium sp. B9-8 1236179 species 0 species 0 375286 Janthinobacterium sp. Marseille 1 961 55508 species 0 1 1951 Janthinobacterium agaricidamnosum species 0 368607 Janthinobacterium svalbardensis 1 2166 26291 17 no rank 0 224471 0 species 413882 [Polyangium] brachysporum 2862 1 genus 0 318147 61 Paucibacter 1 2 2235 2174 1 2642959 no rank 0 2174 1 Paucibacter sp. KCTC 42545 1768242 species 0 87 Methylibium 1 2434 2 genus 0 316612 species 0 105560 Methylibium petroleiphilum 1 2347 166 Rubrivivax 1 2 4069 genus 0 28067 0 species 28068 Rubrivivax gelatinosus 3903 1 236 Mitsuaria 1 3286 2 genus 0 65047 1 3050 2648776 no rank 0 0 species 1658665 Mitsuaria sp. 7 1 3050 Roseateles 96 2 3103 1 0 genus 93681 76731 0 species 1 3007 Roseateles depolymerans 32012 genus 0 1 2 2705 63 Thiomonas 2642 1 Thiomonas intermedia 926 species 0 1 2 3219 192 Rhizobacter 212743 genus 0 0 species 946333 Rhizobacter gummiphilus 3027 1 Leptothrix 60 2378 2 1 0 genus 88 species 0 34029 Leptothrix cholodnii 1 2318 36 48176 1 Neisseriales 759 206351 0 order Chromobacteriaceae 347 13 21946 1 0 family 1499392 2817 2 1 Pseudogulbenkiania 35 568394 0 genus 1 2782 2642558 no rank 0 Pseudogulbenkiania sp. NH8B 1 2782 species 0 748280 90153 0 no rank 4 11613 535 0 genus 4 11613 1 Chromobacterium 176 2641838 no rank 0 1 3468 1 3468 Chromobacterium sp. ATCC 53434 2059672 species 0 536 species 0 3595 1 Chromobacterium violaceum 1108595 species 0 1 4374 Chromobacterium vaccinii 1 2 2077 50 Jeongeupia 885864 genus 0 2619593 no rank 0 2027 1 1906741 0 species 1 2027 Jeongeupia sp. USM3 1 2 2423 38 Laribacter 168470 genus 0 species 0 168471 Laribacter hongkongensis 2385 1 1 2 2669 22 Aquaspirillum 187 genus 0 1 2647 2620219 0 no rank 1938604 0 species 1 2647 Aquaspirillum sp. LM1 481 0 family 22 25471 1 Neisseriaceae 215 59 genus 0 1 3 1838 43 Vitreoscilla 332 1 2627922 0 no rank Vitreoscilla sp. C1 1 332 0 species 96942 species 0 63 Vitreoscilla filiformis 1 1463 Neisseria 309 20166 12 1 0 genus 482 Neisseria gonorrhoeae 1 1771 0 species 485 0 species 490 Neisseria sicca 1 1661 1387 1 Neisseria mucosa 488 species 0 1 1528 Neisseria zoodegmatis 326523 species 0 2 3023 no rank 0 2623750 1853276 0 species 1 908 Neisseria sp. 10022 0 species 655307 Neisseria sp. KEM232 2115 1 Neisseria elongata 1280 1 species 0 495 28091 0 species 1 998 Neisseria weaveri 1 1611 Neisseria sp. 10023 1853278 species 0 Neisseria lactamica 1 2043 species 0 486 species 0 487 Neisseria meningitidis 4555 1 529 1 genus 0 71 0 species 72 Simonsiella muelleri 1 529 538 genus 0 1 2 1457 17 Eikenella 539 0 species 1 1440 Eikenella corrodens 0 genus 1193515 Snodgrassella 3 738 2 1 1196083 species 0 735 1 Snodgrassella alvi 0 no rank 421605 528 1 528 1 Neisseriaceae bacterium DSM 100970 2052837 species 0 order 0 206389 456 Rhodocyclales 1 28558 22 0 family 2008795 Azonexaceae 42 1408 3 1 0 genus 73029 Dechloromonas 37 2 1366 1 259537 species 0 1 1329 Dechloromonas aromatica Zoogloeaceae 432 20699 12 1 0 family 2008794 289 Azoarcus 1 8948 5 genus 0 12960 0 species 418699 Azoarcus olearius 2043 1 2 4773 2629479 no rank 0 species 0 748247 Azoarcus sp. KH32C 1 2023 198107 species 0 1 2750 Azoarcus sp. CIB 2067960 0 species 1 1843 Azoarcus sp. SY39 396 Thauera 1 11319 6 genus 0 33057 0 species 96773 Thauera chlorobenzoica 1 1500 2609274 no rank 0 5425 2 species 0 2005884 Thauera sp. K11 1 2662 species 0 85643 Thauera sp. MZ1T 1 2763 species 0 59405 Thauera aromatica 1757 1 1134435 0 species 1 2241 Thauera humireducens 0 family 75787 Rhodocyclaceae 137 5995 6 1 1 2 2848 154 Azospira 146937 genus 0 0 species 146939 Azospira oryzae 2694 1 1 1354 no rank 0 75788 0 species 1898103 Rhodocyclaceae bacterium 1354 1 genus 0 551759 28 Aromatoleum 1 1656 2 species 0 551760 Aromatoleum aromaticum 1 1628 3226 11 no rank 0 119066 327159 genus 0 1 2 1568 61 Candidatus Accumulibacter 1507 1 Candidatus Accumulibacter phosphatis 327160 0 species 1 60 0 genus 1301080 1160784 0 species 60 1 Candidatus Nasuia deltocephalinicola 285 1 1381133 genus 0 1 285 Candidatus Profftella armatura 669502 0 species 1 61 189384 0 genus 189385 0 species 1 61 Candidatus Tremblaya princeps 33055 genus 0 1 1252 6 17 Kinetoplastibacterium Kinetoplastibacterium blastocrithidii 1 294 species 0 233181 994692 species 0 298 1 Candidatus Kinetoplastibacterium desouzaii 994696 0 species 1 156 Candidatus Kinetoplastibacterium oncopeltii 994695 0 species 270 1 Candidatus Kinetoplastibacterium galatii Candidatus Kinetoplastibacterium crithidii 217 1 0 species 33056 0 no rank 33809 2180 2 543913 species 0 199 1 beta proteobacterium CB 1904640 0 species 1 1981 Betaproteobacteria bacterium GR16-43 Nitrosomonadales 180 21643 44 1 0 order 32003 1 3 1319 61 Thiobacillaceae 2008790 family 0 genus 0 919 7 Thiobacillus 1 1258 2 species 0 36861 Thiobacillus denitrificans 1251 1 81 Sterolibacteriaceae 1 3685 5 family 0 2008793 2 1651 1 Methyloversatilis 17 378210 0 genus 0 no rank 2639971 1634 1 species 0 1842540 Methyloversatilis sp. RAC08 1 1634 1054211 0 genus 2 1953 1 Sulfuritalea 41 1912 1 Sulfuritalea hydrogenivorans 748811 0 species 0 family 90627 Gallionellaceae 68 2589 5 1 1549 2 1 Sideroxydans 33 314343 0 genus 63745 species 0 1 1516 Sideroxydans lithotrophicus Gallionella 8 2 972 1 0 genus 96 370405 0 species 964 1 Gallionella capsiferriformans family 0 2772226 4 2379 genus 0 1778653 50 Sulfuriferula 1 2 1217 1167 1 2637784 0 no rank 1985873 species 0 1 1167 Sulfuriferula sp. AH1 1 1162 2 72 Sulfuricella 935200 genus 0 species 0 649841 Sulfuricella denitrificans 1 1090 0 family 206379 Nitrosomonadaceae 26 12 6061 1 914 genus 0 1 7 3715 11 Nitrosomonas 2 1043 2609265 no rank 0 species 0 261292 Nitrosomonas sp. Is79A3 649 1 0 species 153948 Nitrosomonas sp. AL212 394 1 species 0 915 Nitrosomonas europaea 1 797 species 0 44577 Nitrosomonas ureae 352 1 Nitrosomonas communis 1026 1 species 0 44574 0 species 916 Nitrosomonas eutropha 486 1 2320 4 1 Nitrosospira 11 35798 0 genus 1 829 Nitrosospira lacus 1288494 species 0 Nitrosospira multiformis 1 511 0 species 1231 35799 species 0 969 1 Nitrosospira briensis 14 5430 1 Methylophilaceae 32 32011 0 family Methylotenera 75 3 1074 1 0 genus 359407 0 species 1055487 Methylotenera versatilis 1 598 401 1 Methylotenera mobilis 359408 species 0 16 genus 0 1 498 2 7 Methylophilus 491 1 0 no rank 2630143 491 1 Methylophilus sp. TWE2 1662285 0 species 3 2180 1 Methylovorus 23 81682 0 genus 2634027 0 no rank 1061 1 887061 0 species 1061 1 Methylovorus sp. MP688 Methylovorus glucosotrophus 1096 1 0 species 266009 2 764 1 Methylobacillus 26 404 0 genus Methylobacillus flagellatus 738 1 species 0 405 Candidatus Methylopumilus 2 882 3 1 0 genus 1679002 1581680 species 0 1 332 Candidatus Methylopumilus turicensis 0 species 1581557 Candidatus Methylopumilus planktonicus 1 548 329318 197 68525 subphylum 0 class 0 29547 174 Epsilonproteobacteria 1 82669 71 2303 Campylobacterales 1 65 80824 order 0 213849 family 0 72294 4681 Campylobacteraceae 1 64445 41 5 7194 2321108 0 no rank 28196 genus 0 1 3 3520 163 Arcobacter species 0 28199 Arcobacter nitrofigilis 1 1998 0 species 28197 Arcobacter butzleri 1359 1 2321207 0 no rank 1 1704 1 1704 Arcobacter sp. L 944547 species 0 1970 1 genus 0 2321187 0 species 1850254 Arcobacter sp. LPB0137 1 1970 5828 9 1 Sulfurospirillum 31 57665 0 genus 194424 species 0 1 752 Sulfurospirillum halorespirans 0 species 366522 Sulfurospirillum cavolei 1 718 0 species 65553 Sulfurospirillum deleyianum 461 1 0 species 44674 Sulfurospirillum barnesii 617 1 66821 0 species 1 474 Sulfurospirillum multivorans 2775 3 2618290 no rank 0 Sulfurospirillum sp. UCH001 785 1 0 species 1581011 Sulfurospirillum sp. SL2-1 1 892 0 species 1986224 0 species 220622 Sulfurospirillum sp. JPD-1 1 1098 640 Campylobacter 1 46742 26 genus 0 194 Campylobacter gracilis 1 631 species 0 824 0 species 198 Campylobacter hyointestinalis 1 727 species 0 195 Campylobacter coli 17081 1 851 1 Campylobacter curvus 200 species 0 1965231 0 species 1093 1 Campylobacter pinnipediorum Campylobacter peloridis 561 1 0 species 488546 1 782 Campylobacter cuniculorum 374106 0 species species 0 522485 Campylobacter avium 1 483 Campylobacter helveticus 1 343 species 0 28898 Campylobacter ureolyticus 1 1028 species 0 827 Campylobacter subantarcticus 908 1 0 species 497724 1937 1 Campylobacter lari 201 0 species Campylobacter concisus 1355 1 0 species 199 197 species 0 8643 1 Campylobacter jejuni Campylobacter iguaniorum 622 1 0 species 1244531 Campylobacter sputorum 1416 1 0 species 206 Campylobacter hominis 961 1 0 species 76517 Campylobacter volucris 1 637 species 0 1031542 1320 1 Campylobacter lanienae 75658 species 0 4 2830 2593542 no rank 0 1660073 species 0 1 735 Campylobacter sp. RM6137 586 1 Campylobacter sp. RM12175 1660076 0 species Campylobacter sp. RM16704 597 1 0 species 1500960 912 1 Campylobacter sp. RM8964 1660074 0 species 260714 0 species 1 701 Campylobacter insulaenigrae 1192 1 Campylobacter fetus 196 species 0 3643 5 2771472 0 family 265570 0 genus 3 2635 1 Sulfurovum 6 206403 species 0 1229 1 Sulfurovum lithotrophicum 1400 1 2646778 0 no rank 1400 1 Sulfurovum sp. NBC37-1 387093 0 species 1 1008 2 71 Nitratifractor 269260 genus 0 937 1 Nitratifractor salsuginis 269261 0 species 2771471 0 family 2390 4 1369 3 1 Sulfurimonas 6 202746 0 genus species 0 202747 Sulfurimonas autotrophica 673 1 1 690 Sulfurimonas denitrificans 39766 species 0 1 1021 286130 genus 0 148813 species 0 1 1021 Sulfuricurvum kujiense 14 8043 1 Helicobacteraceae 48 72293 0 family 1 449 843 0 genus 1 449 Wolinella succinogenes 844 species 0 209 genus 0 1 7546 12 29 Helicobacter 159 1 Helicobacter acinonychis 212 0 species 1 467 Helicobacter cetorum 138563 species 0 0 species 1591088 Helicobacter himalayensis 1 332 0 species 76936 Helicobacter typhlonius 1 894 2593540 no rank 0 1 270 222136 0 species 1 270 Helicobacter sp. MIT 01-6242 32025 species 0 728 1 Helicobacter hepaticus 548 1 Helicobacter felis 214 0 species 217 species 0 295 1 Helicobacter mustelae Helicobacter bilis 670 1 species 0 37372 210 species 0 2821 1 Helicobacter pylori 213 0 species 333 1 Helicobacter cinaedi 5 1671 1 Nautiliales 1 235899 0 order 2795691 family 0 1 296 296 1 genus 0 269258 2624044 0 no rank 1 296 Nitratiruptor sp. SB155-2 1 296 species 0 387092 family 0 224467 5 Nautiliaceae 1 1374 3 2 1369 1 Nautilia 8 191291 0 genus 244787 species 0 1361 1 Nautilia profundicola 1 126 246649 509 Deltaproteobacteria 28221 class 0 Syntrophobacterales 45 5742 10 1 0 order 213462 Syntrophaceae 7 3052 6 1 0 family 213468 1 2 670 4 Desulfomonile 2357 genus 0 1 666 Desulfomonile tiedjei 2358 0 species 43773 0 genus 1381 2 1 Syntrophus 1 1 1380 Syntrophus aciditrophicus 316277 species 0 1 994 60892 genus 0 994 1 Desulfobacca acetoxidans 60893 0 species 213465 family 0 1 2645 3 15 Syntrophobacteraceae 29526 0 genus 2 2630 1 Syntrophobacter 9 2621 1 Syntrophobacter fumaroxidans 119484 species 0 213113 order 0 1 1634 5 10 Desulfurellales 117942 family 0 1624 4 Desulfurella 3 2 697 1 0 genus 33001 694 1 Desulfurella acetivorans 33002 0 species 6 Hippea 1 927 2 genus 0 84404 0 species 84405 Hippea maritima 921 1 26 99363 1 Desulfovibrionales 726 213115 0 order 397 Desulfovibrionaceae 1 18 91043 family 0 194924 1 2938 0 genus 2582840 Desulfovibrio africanus 1 2938 0 species 873 1 2 902 71 Lawsonia 41707 genus 0 29546 species 0 831 1 Lawsonia intracellularis genus 0 2794998 1 1968 species 0 880 Desulfovibrio salexigens 1968 1 Desulfovibrio 434 9 72942 1 0 genus 872 4880 1 Desulfovibrio magneticus 184917 species 0 3222 1 Desulfovibrio alaskensis 58180 species 0 1 14611 Desulfovibrio desulfuricans 876 species 0 1 10636 Desulfovibrio fairfieldensis 44742 0 species 0 species 901 Desulfovibrio piger 1 11223 2593640 0 no rank 1 12599 1 12599 Desulfovibrio sp. G11 631220 species 0 Candidatus Desulfovibrio trichonymphae 1 1901 species 0 1725232 0 species 881 Desulfovibrio vulgaris 1 13436 2035811 genus 0 1 4 11896 87 Pseudodesulfovibrio 1 4162 Pseudodesulfovibrio aespoeensis 182210 0 species species 0 57320 Pseudodesulfovibrio profundus 1 2332 1716143 0 species 5315 1 Pseudodesulfovibrio indicus Desulfohalobiaceae 24 3 1060 1 0 family 213117 0 genus 45662 Desulfohalobium 4 1036 2 1 species 0 45663 Desulfohalobium retbaense 1032 1 6534 4 1 Desulfomicrobiaceae 48 213116 0 family Desulfomicrobium 22 6486 3 1 0 genus 898 132132 0 species 1 2929 Desulfomicrobium orale 0 species 899 Desulfomicrobium baculatum 1 3535 4 4641 1 Desulfarculales 52 453227 0 order 1 4589 3 37 Desulfarculaceae 453228 family 0 453229 genus 0 1 2 4552 60 Desulfarculus Desulfarculus baarsii 4492 1 0 species 453230 order 0 213118 108 Desulfobacterales 1 16555 19 68 Desulfobulbaceae 1 7437 8 family 0 213121 Desulfobulbus 19 2762 2 1 0 genus 893 Desulfobulbus sp. ORNL 2743 1 0 species 1986146 1 2 2000 13 Desulfurivibrio 427922 genus 0 427923 species 0 1987 1 Desulfurivibrio alkaliphilus genus 0 53318 5 Desulfocapsa 1 1308 2 0 species 65555 Desulfocapsa sulfexigens 1 1303 1 1299 genus 0 109168 84980 0 species 1299 1 Desulfotalea psychrophila 0 family 213119 Desulfobacteraceae 73 10 9010 1 28222 0 genus 2 1437 1 Desulfobacula 5 1432 1 Desulfobacula toluolica 28223 0 species Desulfobacterium 7 1661 2 1 0 genus 2295 species 0 2296 Desulfobacterium autotrophicum 1 1654 1854 2 1 Desulfatibacillum 10 218207 0 genus 1844 1 Desulfatibacillum alkenivorans 259354 species 0 31 Desulfococcus 1 3985 3 genus 0 896 Desulfococcus oleovorans 1 2174 species 0 181663 species 0 897 Desulfococcus multivorans 1 1780 29 order 0 1 77017 38 1319 Myxococcales suborder 0 224462 4227 3 224464 0 family 4227 3 1 Kofleriaceae 53 0 genus 162027 Haliangium 59 4174 2 1 species 0 80816 Haliangium ochraceum 4115 1 26 57122 0 suborder 80811 126 Vulgatibacteraceae 1 1970 3 family 0 1524213 Vulgatibacter 124 2 1844 1 0 genus 1524214 1391653 species 0 1720 1 Vulgatibacter incomptus Archangiaceae 428 9 16036 1 0 family 39 47 genus 0 1 2 4788 25 Archangium 1 4763 Archangium gephyra 48 0 species 1 3792 2 27 Melittangium 44 genus 0 83453 0 species 1 3765 Melittangium boletus 0 genus 42 Cystobacter 47 2 4108 1 43 species 0 1 4061 Cystobacter fuscus 40 genus 0 1 2 2920 36 Stigmatella 41 0 species 2884 1 Stigmatella aurantiaca 1 27109 9 179 Myxococcaceae 31 family 0 0 genus 83461 Corallococcus 218 8632 3 1 35 0 species 1 3863 Myxococcus macrosporus 184914 species 0 4551 1 Corallococcus coralloides 0 genus 32 Myxococcus 875 5 18298 1 3155 1 Myxococcus xanthus 34 0 species Myxococcus stipitatus 3240 1 species 0 83455 Myxococcus fulvus 1 7476 0 species 33 0 species 1297742 Myxococcus hansupus 3552 1 12007 5 1 Anaeromyxobacteraceae 130 1524215 0 family 161492 genus 0 1 4 11877 249 Anaeromyxobacter 6255 2 0 no rank 2620896 Anaeromyxobacter sp. K 1 3411 0 species 447217 Anaeromyxobacter sp. Fw109-5 2844 1 species 0 404589 Anaeromyxobacter dehalogenans 5373 1 0 species 161493 80812 0 suborder 14349 8 1 3 2886 108 Sandaracinaceae 1055686 family 0 genus 0 1055688 18 Sandaracinus 1 2778 2 Sandaracinus amylolyticus 1 2760 species 0 927083 93 Polyangiaceae 1 5 11463 family 0 49 2 8619 1 Sorangium 127 39643 0 genus Sorangium cellulosum 1 8492 0 species 56 0 genus 50 Chondromyces 4 2751 2 1 52 species 0 2747 1 Chondromyces crocatus Desulfuromonadales 499 23 41188 1 0 order 69541 1 13 26778 161 Geobacteraceae 213422 family 0 1864 1 392332 genus 0 483547 0 species 1864 1 Geoalkalibacter subterraneus 0 genus 28231 Geobacter 363 24753 11 1 1 2347 Geobacter anodireducens 1340425 species 0 Geobacter daltonii 1722 1 0 species 1203471 351604 species 0 1 1841 Geobacter uraniireducens Geobacter metallireducens 1 1919 species 0 28232 2724 1 Geobacter bemidjiensis 225194 species 0 Geobacter lovleyi 1 2376 species 0 313985 no rank 0 2627627 2 6593 0 species 443144 Geobacter sp. M21 2985 1 0 species 443143 Geobacter sp. M18 1 3608 35554 species 0 2242 1 Geobacter sulfurreducens Geobacter pickeringii 1 2626 0 species 345632 213421 0 family 13911 9 1 Desulfuromonadaceae 248 890 genus 0 1 3 5071 64 Desulfuromonas 1 2592 2614637 0 no rank 1823759 0 species 1 2592 Desulfuromonas sp. DDH964 2415 1 Desulfuromonas soudanensis 1603606 0 species 8592 5 1 Pelobacter 96 18 0 genus 1 2953 Pelobacter propionicus 29543 species 0 1 2321 no rank 0 2620299 Pelobacter sp. SFB93 1 2321 0 species 1842532 Pelobacter carbinolicus 1 1654 species 0 19 0 species 29542 Pelobacter acetylenicus 1 1568 2498710 0 clade 715 4 phylum 0 67814 4 715 693071 class 0 1 4 715 15 Caldisericia 693072 0 order 700 3 1 3 700 8 Caldisericaceae 693073 family 0 Caldisericum 58 692 2 1 0 genus 693074 Caldisericum exile 634 1 species 0 693075 phylum 0 1930617 5 1629 0 class 1962850 Calditrichae 3 1629 5 1 1 4 1626 30 Calditrichales 1962852 order 0 1596 3 1 Calditrichaceae 4 1962854 0 family 28 Caldithrix 1 1592 2 genus 0 187144 Caldithrix abyssi 1564 1 species 0 187145 6325 13 phylum 0 40117 29 Nitrospira 1 6325 13 class 0 203693 189778 order 0 1 12 6296 59 Nitrospirales 42 Nitrospiraceae 1 6237 11 family 0 189779 28261 genus 0 1 583 28262 species 0 583 1 Thermodesulfovibrio yellowstonii 1 4149 5 82 Nitrospira 1234 genus 0 1 847 Nitrospira defluvii 330214 0 species Nitrospira moscoviensis 1677 1 species 0 42253 Nitrospira japonica 703 1 species 0 1325564 840 1 Candidatus Nitrospira inopinata 1715989 0 species genus 0 179 8 Leptospirillum 1 4 1463 261385 species group 0 547 1 1 547 Leptospirillum sp. Group II 'CF-1' 1660083 0 species 1 535 261386 species group 0 species 0 178606 Leptospirillum ferriphilum 1 535 655606 species group 0 1 373 species 0 180 Leptospirillum ferrooxidans 373 1 5 2361 0 phylum 200938 1 5 2361 26 Chrysiogenetes 118001 class 0 0 order 189769 Chrysiogenales 77 4 2335 1 family 0 189770 11 Chrysiogenaceae 1 2258 3 genus 0 393029 6 Desulfurispirillum 1 2 2247 936456 species 0 1 2241 Desulfurispirillum indicum 10153 25 200783 0 phylum 187857 0 class 10153 25 1 Aquificae 3 2621 5 1 Desulfurobacteriales 33 1485951 0 order 0 family 558314 Desulfurobacteriaceae 2 2588 4 1 64159 genus 0 2154 1 64160 species 0 2154 1 Desulfurobacterium thermolithotrophum 1 2 432 1 Thermovibrio 171868 genus 0 Thermovibrio ammonificans 1 431 species 0 228745 4 Aquificales 1 19 7529 order 0 32069 64898 family 0 1 11 4649 3 Aquificaceae 0 genus 168657 Hydrogenobaculum 39 3637 6 1 3598 5 2622382 no rank 0 Hydrogenobaculum sp. 3684 1 785 0 species 547143 0 species 547144 Hydrogenobaculum sp. HO 785 1 species 0 547146 Hydrogenobaculum sp. SN 1 785 1 458 Hydrogenobaculum sp. Y04AAS1 380749 0 species 547145 0 species 1 785 Hydrogenobaculum sp. SHO 222 1 0 genus 2713 63363 species 0 222 1 Aquifex aeolicus genus 0 75905 441 2 1 199 Thermocrinis albus 136094 species 0 Thermocrinis ruber 1 242 0 species 75906 1 346 939 0 genus 0 species 940 Hydrogenobacter thermophilus 346 1 1 2544 6 6 Hydrogenothermaceae 224027 family 0 0 genus 212790 Sulfurihydrogenibium 3 2135 3 1 1 1613 no rank 0 2619248 0 species 436114 Sulfurihydrogenibium sp. YO3AOP1 1613 1 519 1 Sulfurihydrogenibium azorense 309806 species 0 182899 genus 0 1 2 403 1 Persephonella 1 402 Persephonella marina 309805 species 0 90150 no rank 0 1 332 1 332 412592 0 genus Thermosulfidibacter takaii 332 1 0 species 412593 46343 24 0 phylum 32066 24 46343 1 Fusobacteriia 16 203490 0 class 203491 0 order 46327 23 1 Fusobacteriales 104 203492 0 family 33515 12 1 Fusobacteriaceae 47 226 Fusobacterium 1 9 30546 genus 0 848 1 1242 Fusobacterium gonidiaformans 849 species 0 856 0 species 4816 1 Fusobacterium varium 851 0 species 9366 1 Fusobacterium nucleatum 1 3039 Fusobacterium ulcerans 861 species 0 species 0 1583098 Fusobacterium hwasookii 1 2411 Fusobacterium mortiferum 1 1786 species 0 850 Fusobacterium periodonticum 1 6254 species 0 860 859 species 0 1406 1 Fusobacterium necrophorum 167639 0 genus 2922 2 1 Ilyobacter 1 species 0 167642 Ilyobacter polytropus 2921 1 25 Leptotrichiaceae 1 12708 10 family 0 1129771 1 5 7971 19 Leptotrichia 32067 genus 0 40542 species 0 2299 1 Leptotrichia buccalis 3 5653 0 no rank 2633022 Leptotrichia sp. oral taxon 847 1 1635 species 0 1785996 0 species 712357 Leptotrichia sp. oral taxon 212 1 2249 1 1769 Leptotrichia sp. oral taxon 498 712368 0 species 1 1977 32068 genus 0 1 1977 Sebaldella termitidis 826 0 species 0 genus 34104 1500 1 1500 1 Streptobacillus moniliformis 34105 0 species genus 0 168808 4 Sneathia 1 2 1235 Sneathia amnii 1 1231 0 species 187101 863 3 no rank 0 2323 3 863 1783234 clade 0 378 1 phylum 0 95818 0 no rank 1895827 1 378 0 species 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 378 485 2 clade 0 95901 2 485 2497643 class 0 485 2 2497644 order 0 family 0 2497645 485 2 1551504 0 genus 2 485 1 Candidatus Babela 25 species 0 673862 Candidatus Babela massiliensis 460 1 phylum 0 200940 8 2154 class 0 67799 1 Thermodesulfobacteria 1 8 2154 Thermodesulfobacteriales 4 2153 7 1 0 order 188710 188711 family 0 1 6 2149 9 Thermodesulfobacteriaceae 241192 0 genus 2 595 1 Thermodesulfatator 2 species 0 171695 Thermodesulfatator indicus 1 593 0 genus 1740 2 1265 species 0 1741 Thermodesulfobacterium commune 1 485 1 780 Thermodesulfobacterium geofontis 1295609 species 0 0 genus 444090 1 280 Caldimicrobium thiodismutans 280 1 0 species 1653476 0 phylum 68297 4 1691 0 class 203486 4 1691 1691 4 order 0 203487 1 4 1691 1 Dictyoglomaceae 203488 family 0 1 Dictyoglomus 1 1690 3 genus 0 13 Dictyoglomus turgidum 1 692 species 0 513050 0 species 14 Dictyoglomus thermophilum 1 997 1 21 14480 3 Acidobacteria 57723 phylum 0 Blastocatellia 10 3 1720 1 0 class 1562566 1710 2 1 Chloracidobacterium 9 458032 0 genus Chloracidobacterium thermophilum 1701 1 0 species 458033 Acidobacteriia 54 17 12757 1 0 class 204432 0 order 332160 Solibacterales 82 4 2472 1 332161 family 0 1 2390 3 66 Solibacteraceae 2 2324 1 Candidatus Solibacter 13 332162 0 genus 2311 1 Candidatus Solibacter usitatus 332163 0 species 10231 12 1 Acidobacteriales 102 204433 0 order 0 family 204434 Acidobacteriaceae 114 11 10129 1 19 Terriglobus 1 3 3296 genus 0 392733 1679 1 Terriglobus roseus 392734 0 species species 0 870903 Terriglobus saanensis 1 1598 genus 0 33973 35 Acidobacterium 1 1658 2 species 0 33075 Acidobacterium capsulatum 1 1623 940557 0 genus 3 3459 1 Granulicella 83 1 1561 Granulicella mallensis 940614 species 0 Granulicella tundricola 1815 1 species 0 940615 0 genus 658061 Candidatus Koribacter 18 1602 2 1 658062 0 species 1 1584 Candidatus Koribacter versatilis 0 name 0 1