members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 30 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 17112 4586 6748079 0 1 0 name 1 83 Bacteria 4293 6696479 0 2 superkingdom 2323 no rank 0 2 429 clade 1783234 2 429 0 95818 phylum 55 1 0 0 55 1 1895827 no rank Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 55 1 0 2056494 species 95901 clade 0 374 1 class 2497643 374 1 0 0 1 374 2497644 order 2497645 family 374 1 0 genus 1551504 374 1 0 Candidatus Babela massiliensis 0 1 374 673862 species phylum 508458 0 11 4898 class 649775 0 4898 11 Synergistia 2 1 4 Synergistales 1 0 10 4896 649776 order family 649777 0 4892 9 Synergistaceae 769 1 336260 genus 322 1 0 Thermovirga lienii 1 322 0 336261 species 2 257 0 1 1 Thermanaerovibrio genus 81461 256 1 0 Thermanaerovibrio acidaminovorans species 81462 Cloacibacillus 4 1 0 2 2897 508459 genus species 1197717 1 2893 0 Cloacibacillus porcorum 2 417 0 1 1 Aminobacterium genus 81466 0 416 1 Aminobacterium colombiense species 81468 230 1 0 genus 49894 97477 species Acetomicrobium mobile 230 1 0 phylum 74152 0 6 766 Elusimicrobia 1 1 641853 class 0 355 2 2 355 0 1 1 Elusimicrobiales order 641854 family 641876 0 1 354 423604 genus 0 1 354 423605 species Elusimicrobium minutum 0 1 354 99260 no rank 0 1 88 167965 species uncultured Termite group 1 bacterium 1 88 0 class 447830 322 2 0 1783344 order 322 2 0 0 2 322 family 1783343 0 2 322 1408194 genus 0 243 1 Endomicrobium proavitum species 1408281 species 1408204 0 79 1 Candidatus Endomicrobium trichonymphae phylum 200918 0 41 11943 class 188708 41 11943 0 1 Thermotogae 6 order 1643947 8 4151 0 1 Petrotogales 5 family 1643949 0 7 4146 genus 28236 0 323 2 2 Petrotoga 1 species 69499 321 1 0 Petrotoga mobilis genus 1511648 0 2 753 1 Defluviitoga 1 Defluviitoga tunisiensis 752 1 0 1006576 species 3070 3 0 1 4 Marinitoga genus 160798 1538 1 0 2640159 no rank 0 1 1538 Marinitoga sp. 1137 species 1545835 species 149715 1528 1 0 Marinitoga piezophila order 1643946 734 4 0 1 1 Kosmotogaceae 4 734 0 1643948 family 651456 genus 0 571 2 332 1 0 Kosmotoga olearia species 651457 species 1330330 1 239 0 Kosmotoga pacifica 0 1 162 1184396 genus species 1184387 0 162 1 Mesotoga prima order 2419 0 7052 28 Thermotogales 2 1 12 Thermotogaceae 1 0 17 4038 188709 family genus 1643951 5 1189 0 1 Pseudothermotoga 14 0 270 1 Pseudothermotoga thermarum species 119394 38322 species Pseudothermotoga elfii 0 348 1 Pseudothermotoga hypogea 0 1 203 57487 species 354 1 0 Pseudothermotoga lettingae species 177758 genus 2335 11 2837 0 1 21 Thermotoga 0 1 145 Thermotoga profunda species 1508420 species 1508419 162 1 0 Thermotoga caldifontis 2336 species Thermotoga maritima 0 436 1 species 93929 1 279 0 Thermotoga petrophila 2337 species Thermotoga neapolitana 411 1 0 0 4 925 no rank 2631113 1 97 0 Thermotoga sp. Cell2 species 1157947 species 126740 168 1 0 Thermotoga sp. RQ2 Thermotoga sp. RQ7 0 417 1 126738 species 0 1 243 Thermotoga sp. 2812B species 1157948 93930 species Thermotoga naphthophila 0 1 458 family 1643950 0 3012 10 Fervidobacteriaceae 22 1 2420 genus Thermosipho 11 1 0 1723 5 2676525 no rank 2 598 0 0 1 288 Thermosipho sp. 1063 species 1462747 1437364 species Thermosipho sp. 1070 310 1 0 Thermosipho melanesiensis 0 567 1 46541 species 0 547 1 Thermosipho africanus species 2421 genus 2422 4 1267 0 1 4 Fervidobacterium Fervidobacterium islandicum 1 275 0 2423 species 93466 species Fervidobacterium pennivorans 0 546 1 0 1 442 Fervidobacterium nodosum species 2424 0 40875 23 32066 phylum 203490 class 29 Fusobacteriia 1 0 40875 23 203491 order 1 Fusobacteriales 74 22 40846 0 family 203492 12 33915 0 1 44 Fusobacteriaceae 848 genus 53 Fusobacterium 1 0 32028 9 species 850 1 7913 0 Fusobacterium mortiferum Fusobacterium hwasookii 0 1 2976 1583098 species species 860 1 5472 0 Fusobacterium periodonticum species 856 0 4095 1 Fusobacterium varium 851 species Fusobacterium nucleatum 8053 1 0 Fusobacterium necrophorum 787 1 0 859 species 0 1 1562 Fusobacterium ulcerans species 861 species 849 0 1 1117 Fusobacterium gonidiaformans 167639 genus 1 1 Ilyobacter 2 1843 0 species 167642 0 1842 1 Ilyobacter polytropus 1 12 Leptotrichiaceae 6857 9 0 1129771 family genus 32068 0 944 1 826 species Sebaldella termitidis 0 1 944 0 3580 5 1 Leptotrichia 1 genus 32067 40542 species Leptotrichia buccalis 1 821 0 2758 3 0 no rank 2633022 712357 species Leptotrichia sp. oral taxon 212 0 1 1333 712368 species Leptotrichia sp. oral taxon 498 0 1 617 species 1785996 0 1 808 Leptotrichia sp. oral taxon 847 0 1 1072 168808 genus Sneathia amnii 0 1 1072 187101 species 0 1 1249 34104 genus 34105 species Streptobacillus moniliformis 1 1249 0 68297 phylum 1463 2 0 class 203486 0 2 1463 1463 2 0 order 203487 203488 family 0 2 1463 1463 2 0 13 genus species 14 0 1 864 Dictyoglomus thermophilum 0 1 599 Dictyoglomus turgidum species 513050 1930617 phylum 0 4 609 1 3 Calditrichae 4 609 0 1962850 class order 1962852 0 3 606 4 Calditrichaceae 1 0 606 3 1962854 family 187144 genus 1 2 Caldithrix 2 602 0 0 600 1 Caldithrix abyssi species 187145 phylum 40117 12 3226 0 12 3226 0 1 Nitrospira 8 class 203693 order 189778 0 3218 11 Nitrospirales 10 1 family 189779 0 3208 10 Nitrospiraceae 7 1 genus 28261 0 1 762 species 28262 0 762 1 Thermodesulfovibrio yellowstonii 5 Nitrospira 1 0 1878 5 1234 genus 42253 species Nitrospira moscoviensis 0 1 704 Nitrospira defluvii 0 342 1 330214 species 1325564 species Nitrospira japonica 0 494 1 0 333 1 Candidatus Nitrospira inopinata species 1715989 genus 179 561 3 0 261386 species group 0 1 182 0 1 182 Leptospirillum ferriphilum species 178606 0 1 207 species group 655606 species 180 0 1 207 Leptospirillum ferrooxidans 172 1 0 261385 species group species 1660083 172 1 0 Leptospirillum sp. Group II 'CF-1' 1783270 clade 2777144 360 0 65842 phylum 0 3 1905 class 204430 1905 3 0 0 3 1905 218872 order 204431 family 1 Fibrobacteraceae 1 0 3 1905 genus 832 1904 2 0 1 1 Fibrobacter 0 1903 1 Fibrobacter succinogenes species 833 68336 clade 2773161 348 0 0 8 1314 1134404 phylum 0 1314 8 3 Ignavibacteria 1 class 795747 795748 order 1 Ignavibacteriales 18 7 1311 0 795749 family 1 39 Ignavibacteriaceae 3 760 0 795750 genus Ignavibacterium 1 1 0 721 2 591197 species Ignavibacterium album 1 720 0 1334117 family 1 Melioribacteraceae 5 3 533 0 1134403 genus 8 Melioribacter 1 0 2 528 0 520 1 Melioribacter roseus species 1134405 phylum 976 0 318 2763670 Bacteroidetes 58 1 9 Sphingobacteriia 1 0 25961 24 117747 class order 200666 23 25952 0 1 Sphingobacteriales 8 84566 family 21 Sphingobacteriaceae 1 0 25944 22 84568 no rank 0 1 1940 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1 1940 1986952 species genus 84567 0 8500 6 7 Pedobacter 1 0 1619 1 Pedobacter ginsengisoli species 363852 Pedobacter cryoconitis 1 1343 0 188932 species 0 1 1686 no rank 2628915 1 1686 0 Pedobacter sp. PACM 27299 species 1727164 Pedobacter heparinus 1560 1 0 984 species species 430522 0 2285 1 Pedobacter steynii 7 Pseudopedobacter 1 0 1696 2 1649482 genus species 151895 0 1 1689 Pseudopedobacter saltans 0 4 3106 51 Mucilaginibacter 1 genus 423349 no rank 2617802 1 972 0 Mucilaginibacter sp. PAMC 26640 0 972 1 1300914 species 1234841 species Mucilaginibacter sp. BJC16-A31 0 1 912 species 1550579 1171 1 0 Mucilaginibacter gotjawali genus 929509 2 2266 0 1 Solitalea 4 995 species Solitalea canadensis 0 2262 1 1 Sphingobacterium 6 6 8415 0 28453 genus 2609468 no rank 4 6778 0 1 2222 0 Sphingobacterium sp. B29 species 1933220 species 2003121 1973 1 0 Sphingobacterium sp. G1-14 species 1538644 1233 1 0 Sphingobacterium sp. ML3W species 743722 1 1350 0 Sphingobacterium sp. 21 1010 species Sphingobacterium mizutaii 0 1631 1 class 1853228 0 12036 15 7 Chitinophagia 1 Chitinophagales 15 1 0 14 12029 1853229 order 563835 family Chitinophagaceae 50 1 0 13 12014 649460 genus 0 1564 1 species 477680 0 1564 1 Filimonas lacunae genus 379899 0 2124 3 12 Niabella 1 446683 species Niabella soli 0 1 1211 species 1176587 1 901 0 Niabella ginsenosidivorans 0 1244 1 1769012 genus 0 1 1244 2636138 no rank species 1850526 0 1244 1 Arachidicoccus sp. BS20 genus 79328 3993 3 0 1 Chitinophaga 3 Chitinophaga pinensis 0 1 2192 79329 species 0 1 1798 Chitinophagaceae bacterium 13 species 2029983 Flavisolibacter 12 1 0 1064 2 398041 genus 1492898 species Flavisolibacter tropicus 1052 1 0 1 7 Niastella 1975 2 0 354354 genus 354356 species Niastella koreensis 0 1968 1 139 157016 0 1 Flavobacteriia 21 class 117743 1 Flavobacteriales 189 156995 138 0 200644 order 2 1365 0 1853230 family Fluviicola 1 1 0 2 1365 332102 genus species 191579 1364 1 0 Fluviicola taffensis 0 2 254 313602 no rank 1940138 genus 1 29 0 29 1 0 Candidatus Walczuchella monophlebidarum species 1415657 genus 336809 0 225 1 species 336810 225 1 0 Candidatus Sulcia muelleri family 1333713 885 2 0 1 Owenweeksia 1 2 885 0 267986 genus 253245 species Owenweeksia hongkongensis 0 884 1 family 2762318 21 42857 0 1 1011 0 genus 1013 1014 species Weeksella virosa 1 1011 0 34084 genus 1 1 Riemerella 2 3933 0 34085 species Riemerella anatipestifer 0 1 3932 2782232 no rank 0 10 21922 0 17465 9 Chryseobacterium 22 1 genus 59732 species 1324352 4403 1 0 Chryseobacterium gallinarum 558152 species Chryseobacterium piperi 0 1 1287 species 1685010 1 2114 0 Chryseobacterium glaciei 0 1 1694 Chryseobacterium camelliae species 1265445 0 3 4469 2593645 no rank 878220 species Chryseobacterium sp. StRB126 0 1 1737 Chryseobacterium sp. IHB B 17019 1 1110 0 1721091 species 2015076 species Chryseobacterium sp. T16E-39 1622 1 0 Chryseobacterium indologenes 0 3476 1 253 species 0 4457 1 2782228 genus 1 4457 0 Chryseobacterium taklimakanense species 536441 0 2 7835 Ornithobacterium 5 1 genus 28250 0 1 7830 Ornithobacterium rhinotracheale species 28251 0 6 8156 Elizabethkingia 34 1 genus 308865 Elizabethkingia meningoseptica 0 792 1 238 species Elizabethkingia anophelis 1 4303 0 1117645 species 0 895 1 Elizabethkingia genomosp. 3 species 1756149 1 686 0 Elizabethkingia genomosp. 4 species 1756150 species 172045 1 1446 0 Elizabethkingia miricola family 49546 109105 99 0 1 763 Flavobacteriaceae 1 Robiginitalea 1 2 1139 0 252306 genus 252307 species Robiginitalea biformata 0 1138 1 1 550 0 genus 83612 Psychroflexus torquis 0 1 550 57029 species genus 225842 0 3 1118 24 Formosa 1 0 2 1094 no rank 2644710 species 1336795 0 569 1 Formosa sp. Hel3_A1_48 species 1336794 0 525 1 Formosa sp. Hel1_33_131 5 10244 0 1 Myroides 60 genus 76831 no rank 2642485 0 2869 2 1583100 species Myroides sp. A21 0 1102 1 1458492 species Myroides sp. ZB35 0 1 1767 Myroides profundi 0 1 1217 480520 species 76832 species Myroides odoratimimus 0 6098 1 genus 1518147 0 1 1546 Wenyingzhuangia fucanilytica 0 1 1546 1790137 species genus 52959 6567 6 0 1 12 Polaribacter species 1774273 0 1439 1 Polaribacter vadi 1 1078 0 Polaribacter reichenbachii species 996801 196858 no rank 0 4038 3 Polaribacter sp. MED152 1864 1 0 313598 species Polaribacter sp. ALD11 0 1654 1 2058137 species 1529069 species Polaribacter sp. BM10 1 520 0 1 123 Flavobacterium 10544 9 0 237 genus species 1763534 706 1 0 Flavobacterium crassostreae 813 1 0 Flavobacterium indicum species 312277 Flavobacterium psychrophilum 0 822 1 96345 species 0 1 1272 Flavobacterium commune species 1306519 species 55197 1 817 0 Flavobacterium branchiophilum 1 1079 0 Flavobacterium gilvum species 1492737 986 species Flavobacterium johnsoniae 1 3038 0 Flavobacterium columnare 0 1 1874 996 species 0 1038 1 genus 261827 1736674 species Algibacter alginicilyticus 0 1038 1 4 2147 0 1 9 Dokdonia genus 326319 Dokdonia donghaensis 1038 1 0 326320 species no rank 2615033 1100 2 0 526 1 0 Dokdonia sp. 4H-3-7-5 species 983548 0 1 574 Dokdonia sp. MED134 species 313590 1649495 genus 0 1163 1 2622645 no rank 0 1 1163 0 1 1163 Seonamhaeicola sp. S2-3 species 1936081 417127 genus 1834 1 0 species 398743 0 1834 1 Zunongwangia profunda genus 143222 1 1134 0 0 1 1134 2633436 no rank 1729720 species Salegentibacter sp. T436 0 1134 1 genus 291183 0 2232 4 Lacinutrix 5 1 0 2 1254 2647285 no rank species 2057808 913 1 0 Lacinutrix sp. Bg11-31 1 341 0 Lacinutrix sp. 5H-3-7-4 species 983544 species 1486034 0 973 1 Lacinutrix venerupis genus 358023 998 2 0 1 Lutibacter 1 1622118 species Lutibacter profundi 0 997 1 1 1511 0 393005 genus Tamlana sp. UJ94 0 1511 1 2069432 species 216431 genus 447 1 0 313588 species Croceibacter atlanticus 1 447 0 genus 178469 786 1 0 616991 species Arenibacter algicola 786 1 0 1176327 genus 262 1 0 262 1 0 2636237 no rank species 2094025 1 262 0 Aureitalea sp. RR4-38 2 1388 0 1 Zobellia 7 genus 112040 Zobellia galactanivorans 1 1381 0 63186 species Cellulophaga 18 1 0 4361 4 104264 genus Cellulophaga baltica 0 1 1864 76594 species Cellulophaga lytica 1 1365 0 979 species 0 1114 1 Cellulophaga algicola species 59600 2700084 genus 1 1250 0 Lutibacter sp. LPB0138 1250 1 0 1850246 species 1204360 genus 0 1 1086 species 762954 0 1 1086 Siansivirga zeaxanthinifaciens 286104 genus 0 2 1858 2615021 no rank 0 2 1858 0 632 1 Winogradskyella sp. J14-2 species 1936080 754409 species Winogradskyella sp. PG-2 1226 1 0 104267 genus Tenacibaculum 2 1 0 4850 5 species 1850252 1 1062 0 Tenacibaculum todarodis 669041 species Tenacibaculum dicentrarchi 0 1 1286 species 584609 1 1547 0 Tenacibaculum jejuense species 107401 0 1 953 Tenacibaculum maritimum 0 30039 15 Capnocytophaga 270 1 genus 1016 1 2614 0 Capnocytophaga sputigena species 1019 species 1848904 0 1716 1 Capnocytophaga stomatis species 45243 1 1682 0 Capnocytophaga haemolytica 0 3285 1 Capnocytophaga leadbetteri species 327575 species 1018 0 1094 1 Capnocytophaga ochracea 10153 6 0 2640652 no rank 1 1662 0 Capnocytophaga sp. oral taxon 864 species 1316593 1316596 species Capnocytophaga sp. oral taxon 878 1 3043 0 1945658 species Capnocytophaga sp. H4358 1 1091 0 0 1 1958 Capnocytophaga sp. oral taxon 323 species 1705617 species 1945657 1164 1 0 Capnocytophaga sp. H2931 species 209053 0 1235 1 Capnocytophaga sp. ChDC OS43 species 1017 0 1 5637 Capnocytophaga gingivalis Capnocytophaga cynodegmi 0 1208 1 28189 species 0 2380 1 Capnocytophaga canimorsus species 28188 genus 336276 1 208 0 no rank 2615019 0 208 1 208 1 0 Olleya sp. Bg11-27 species 2058135 1 543 0 389486 genus no rank 2648869 543 1 0 Sediminicola sp. YIK13 0 543 1 1453352 species 1355 2 0 genus 111500 Muricauda ruestringensis 0 847 1 111501 species 516051 species Muricauda lutaonensis 0 1 508 292691 genus 4 Gramella 1 0 5 5258 species 411153 0 1 1526 Gramella forsetii 798 1 0 Gramella sp. LPB0144 species 1913577 Gramella sp. SH35 0 1 1564 2126553 species 1 1366 0 Gramella flava species 1486245 no rank 61432 0 2 1803 1150389 species Flavobacteriaceae bacterium UJ101 0 1 906 531844 species Flavobacteriaceae bacterium 3519-10 0 897 1 1 541 0 1209327 genus Flavivirga eckloniae 1 541 0 1803846 species genus 363408 5 3205 0 1 Nonlabens 4 2 1581 0 2615035 no rank 1476901 species Nonlabens sp. MIC269 898 1 0 0 1 683 Nonlabens sp. MB-3u-79 species 2058134 species 328515 611 1 0 Nonlabens dokdonensis species 319236 0 1009 1 Nonlabens sediminis 252356 genus Maribacter 4 1 0 4785 5 no rank 2615042 0 3 3784 765 1 0 Maribacter sp. HTCC2170 species 313603 species 1836467 0 736 1 Maribacter sp. T28 Maribacter sp. 1_2014MBL_MicDiv 0 1 2283 1644130 species 0 1 997 Maribacter cobaltidurans species 1178778 0 1 552 genus 153265 101385 species Aequorivita sublithincola 552 1 0 241 1 0 family 1755828 genus 1755829 0 1 241 Ichthyobacterium seriolicida 0 1 241 242600 species family 39782 0 2097 9 0 9 2097 Blattabacterium 19 1 genus 34098 Blattabacterium cuenoti 0 519 1 1653831 species species 164514 1 175 0 Blattabacterium punctulatus 6 1384 0 no rank 2647581 39768 species Blattabacterium sp. (Mastotermes darwiniensis) 0 307 1 1316444 species Blattabacterium sp. (Nauphoeta cinerea) 295 1 0 Blattabacterium sp. (Blattella germanica) 286 1 0 624186 species 1 58 0 Blattabacterium sp. (Blatta orientalis) species 367806 Blattabacterium sp. (Blaberus giganteus) 0 306 1 1186051 species 132 1 0 Blattabacterium sp. (Periplaneta americana) species 367488 Cryomorphaceae 0 1 2 246874 family 1883 5 0 1937959 class 1936988 order 0 5 1883 0 623 2 89374 family 1007 genus 1 Saprospira 1 0 2 623 1008 species Saprospira grandis 622 1 0 1 Haliscomenobacteraceae 1 0 1260 3 1937961 family genus 2349 0 1259 2 Haliscomenobacter 2 1 species 2350 0 1 1257 Haliscomenobacter hydrossis 1 65 Cytophagia 58 48372 0 768503 class 0 48307 57 91 Cytophagales 1 order 768507 1853234 family Persicobacteraceae 1 1 0 3 1938 Persicobacter 4 1 0 1937 2 59740 genus 2664020 no rank 0 1 1933 1085624 species Persicobacter sp. JZB09 0 1933 1 1 Cytophagaceae 23 14106 17 0 89373 family genus 105 2 1291 0 1 Runella 4 species 106 0 1287 1 Runella slithyformis 1166 2 0 1 1 Cytophaga genus 978 985 species Cytophaga hutchinsonii 1 1165 0 1 1 Fibrella 2356 2 0 861914 genus 2620963 no rank 2355 1 0 0 2355 1 Fibrella sp. ES10-3-2-2 species 1834519 genus 107 0 5759 6 109 Spirosoma 1 Spirosoma aerolatum 1 909 0 1211326 species 1178516 species Spirosoma montaniterrae 1 1478 0 0 1372 1 Spirosoma sp. HA7 species 2057025 species 564064 0 1 857 Spirosoma rigui 0 1 1034 Spirosoma radiotolerans species 1379870 0 1484 2 Leadbetterella 1 1 genus 319458 1483 1 0 Leadbetterella byssophila species 316068 120831 genus Dyadobacter 4 1 0 2 2027 94254 species Dyadobacter fermentans 0 1 2023 0 3 3845 Flammeovirgaceae 1 1 family 200667 0 1 1652 340671 no rank 1257021 species Flammeovirgaceae bacterium 311 0 1652 1 59739 genus 0 2192 1 2192 1 0 no rank 2637820 Flammeovirga sp. MY04 0 1 2192 1191459 species family 2762301 1465 2 0 869806 genus 1 25 Marivirga 2 1465 0 1006 species Marivirga tractuosa 0 1440 1 1 Amoebophilaceae 1 389 3 0 1501348 family 271 1 0 genus 273135 2641185 no rank 0 1 271 1 271 0 Cardinium endosymbiont of Encarsia pergandiella species 249402 genus 281119 1 117 0 281120 species Candidatus Amoebophilus asiaticus 0 1 117 563798 family 1 20 Cyclobacteriaceae 4115 10 0 1 1 Echinicola 942 2 0 390846 genus 390884 species Echinicola vietnamensis 941 1 0 genus 68288 0 1291 3 14 Cyclobacterium 1 species 320787 1 795 0 Cyclobacterium amurskyense species 104 1 482 0 Cyclobacterium marinum Belliella 2 1 0 2 1168 232244 genus species 232259 0 1 1166 Belliella baltica 1 Algoriphagus 3 2 694 0 246875 genus 1 691 0 Algoriphagus sp. M8-2 species 1727163 1937968 family Bernardetiaceae 9 1 0 2 1467 1 1458 0 genus 1937972 1458 1 0 Bernardetia litoralis species 999 family 1853232 0 16 20891 Hymenobacteraceae 50 1 323449 genus Pontibacter 8 1 0 4673 3 2072 1 0 Pontibacter akesuensis species 388950 species 400092 0 1 2593 Pontibacter korlensis 89966 genus Hymenobacter 150 1 0 8 12052 Hymenobacter swuensis 1566 1 0 1446467 species 2615202 no rank 8210 5 0 1484118 species Hymenobacter sp. PAMC 26628 0 1750 1 1484116 species Hymenobacter sp. PAMC 26554 1 1721 0 1385664 species Hymenobacter sp. DG25B 1 1625 0 species 1385663 0 1 1038 Hymenobacter sp. DG25A Hymenobacter sp. APR13 1 2076 0 1356852 species species 1411621 0 2126 1 Hymenobacter sedentarius genus 1379908 0 4116 4 21 Rufibacter 1 0 2 2418 no rank 2639626 0 1 1002 Rufibacter sp. DG31D species 1379910 0 1416 1 Rufibacter sp. DG15C species 1379909 species 512763 1677 1 0 Rufibacter tibetensis order 1100069 0 6 2859 68 Bacteroidetes Order II. Incertae sedis 1 563843 family 9 Rhodothermaceae 1 0 5 2791 0 402 1 146918 genus Salinibacter ruber 1 402 0 146919 species 1376 1 0 no rank 1196022 species 1779382 0 1376 1 Rhodothermaceae bacterium RA genus 29548 0 2 1004 Rhodothermus 20 1 species 29549 0 984 1 Rhodothermus marinus 113 Bacteroidia 1 0 2515485 70 200643 class order 1970189 6920 11 0 1 3 Marinilabiliales Prolixibacteraceae 1 1 0 3 3024 1471398 family genus 1471399 0 3023 2 Draconibacterium 7 1 0 3016 1 Draconibacterium orientale species 1168034 1573805 family 1 Marinifilaceae 1 0 1634 2 2060722 genus 1633 1 0 Marinifilaceae bacterium SPP2 1 1633 0 1717717 species family 1970190 0 683 2 Salinivirgaceae 1 1 682 1 0 1970191 genus 1307839 species Salinivirga cyanobacteriivorans 0 1 682 1 3 Marinilabiliaceae 3 1576 0 558415 family 1 Alkalitalea 2 1573 2 0 1193324 genus 1571 1 0 Alkalitalea saponilacus species 889453 2508452 58 0 1 625 Bacteroidales order 171549 171552 family 52 Prevotellaceae 1 0 11 602327 genus 838 0 602275 10 Prevotella 810 1 0 81359 1 Prevotella jejuni species 1177574 species 28131 129388 1 0 Prevotella intermedia 1 84000 0 Prevotella melaninogenica species 28132 0 48749 1 Prevotella denticola species 28129 589436 species Prevotella fusca 65155 1 0 species 76123 26084 1 0 Prevotella enoeca species 52227 1 57464 0 Prevotella dentalis 1 94189 0 Prevotella ruminicola species 839 0 1 15077 no rank 2638335 Prevotella sp. oral taxon 299 0 1 15077 652716 species Rikenellaceae 7 1 0 5 72783 171550 family 2 Mucinivorans 1 0 1933 2 1611681 genus 1 1931 0 Mucinivorans hirudinis species 1433126 0 70843 2 24 Alistipes 1 genus 239759 species 214856 70819 1 0 Alistipes finegoldii family 815 11 707203 0 1 Bacteroidaceae 48 Bacteroides 20019 1 0 707155 10 816 genus species 818 0 96548 1 Bacteroides thetaiotaomicron 246787 species Bacteroides cellulosilyticus 0 1 112560 28116 species Bacteroides ovatus 66852 1 0 Bacteroides heparinolyticus 1 40782 0 28113 species 0 84440 1 Bacteroides caecimuris species 1796613 species 290053 1 55054 0 Bacteroides helcogenes Bacteroides caccae 1 48015 0 47678 species 0 1 38541 Bacteroides zoogleoformans species 28119 1 144344 0 Bacteroides fragilis species 817 185291 no rank 0 1736 1 species 1400053 1736 1 0 Bacteroidales bacterium CF 1 1 Dysgonamonadaceae 7 16441 0 2005520 family 2 3827 0 1 1 Fermentimonas genus 1784836 0 1 3826 Fermentimonas caenicola species 1562970 294702 genus 7 Proteiniphilum 1 0 6334 2 species 1642647 1 6327 0 Proteiniphilum saccharofermentans Petrimonas 4 1 0 2 6279 307628 genus Petrimonas mucosa 6275 1 0 1642646 species 2005519 family Barnesiellaceae 1 1 0 47859 3 Barnesiella 7 1 0 2 47858 397864 genus 1 47851 0 Barnesiella viscericola species 397865 333046 no rank 531848 5 0 genus 511434 2 1629 0 1 Candidatus Azobacteroides 1 Candidatus Azobacteroides pseudotrichonymphae 0 1 1628 511435 species 909656 genus 0 3 530219 0 1 302998 Bacteroides vulgatus species 821 376805 species Bacteroides salanitronis 101475 1 0 357276 species Bacteroides dorei 125746 1 0 family 2005525 0 7 435329 17 Tannerellaceae 1 375288 genus 65 Parabacteroides 1 0 416649 3 0 237350 1 no rank 2649774 Parabacteroides sp. CT06 0 237350 1 2025876 species 0 179234 1 Parabacteroides distasonis species 823 195950 genus 1 27 Tannerella 3 18663 0 0 12324 1 Tannerella forsythia species 28112 6312 1 0 no rank 2620507 712710 species Tannerella sp. oral taxon HOT-286 6312 1 0 2 73309 0 1853231 family 283168 genus 1 12 Odoribacter 73309 2 0 28118 species Odoribacter splanchnicus 73297 1 0 0 6293 1 family 2005523 0 6293 1 346096 genus Paludibacter propionicigenes 6293 1 0 185300 species family 171551 0 4 12699 11 Porphyromonadaceae 1 genus 836 3 12688 0 1 31 Porphyromonas 0 1 3964 Porphyromonas asaccharolytica species 28123 837 species Porphyromonas gingivalis 8693 1 0 0 8177 22 1090 phylum class 191410 8177 22 0 1 Chlorobia 66 order 191411 21 8111 0 1 68 Chlorobiales family 191412 20 8043 0 1 Chlorobiaceae 230 0 2038 4 Chlorobaculum 3 1 genus 256319 Chlorobaculum tepidum 561 1 0 1097 species 0 745 1 Chlorobaculum limnaeum species 274537 0 1 729 Chlorobaculum parvum species 274539 0 5 1376 Prosthecochloris 1 1 genus 1101 1 253 0 Prosthecochloris aestuarii species 1102 2632826 no rank 1122 3 0 Prosthecochloris sp. HL-130-GSB 486 1 0 1974213 species 0 1 230 Prosthecochloris sp. CIB 2401 species 1868325 406 1 0 Prosthecochloris sp. GSB1 species 281093 274493 no rank 0 3837 8 genus 1091 0 2087 5 2 Chlorobium 1 Chlorobium chlorochromatii 1 625 0 337090 species 1092 species Chlorobium limicola 0 1 493 1 347 0 Chlorobium phaeovibrioides species 1094 Chlorobium phaeobacteroides 0 620 1 1096 species genus 1099 1750 3 0 1 Pelodictyon 1 0 1 940 Pelodictyon phaeoclathratiforme species 34090 species 1100 809 1 0 Pelodictyon luteolum 0 2 562 Chloroherpeton 1 1 genus 100715 species 100716 561 1 0 Chloroherpeton thalassium 0 1635 8 142182 phylum 1 Gemmatimonadetes 2 8 1635 0 219685 class 1 Gemmatimonadales 33 1633 7 0 219686 order 219687 family Gemmatimonadaceae 9 1 0 1600 6 0 3 878 Gemmatimonas 6 1 genus 173479 Gemmatimonas phototrophica 0 1 363 1379270 species species 173480 0 1 509 Gemmatimonas aurantiaca 1706036 genus Gemmatirosa 5 1 0 2 713 species 861299 0 708 1 Gemmatirosa kalamazoonesis 0 443 1 456828 phylum 443 1 0 456826 genus 1 443 0 Candidatus Cloacimonas acidaminovorans species 456827 23 3611 0 phylum 200783 23 3611 0 1 Aquificae 2 class 187857 1485951 order 1 Desulfurobacteriales 1 0 718 4 family 558314 0 717 3 0 2 531 Desulfurobacterium 1 1 genus 64159 64160 species Desulfurobacterium thermolithotrophum 0 530 1 1 186 0 171868 genus Thermovibrio ammonificans 0 1 186 228745 species 2891 18 0 32069 order no rank 90150 181 2 0 1 Thermosulfidibacter 1 0 181 2 412592 genus species 412593 180 1 0 Thermosulfidibacter takaii 0 11 1313 1 Aquificaceae 1 family 64898 genus 939 0 1 71 940 species Hydrogenobacter thermophilus 0 1 71 2713 genus 0 1 274 Aquifex aeolicus 0 274 1 63363 species 168657 genus 1 Hydrogenobaculum 6 699 6 0 no rank 2622382 0 693 5 1 93 0 Hydrogenobaculum sp. 3684 species 547143 species 380749 0 1 321 Hydrogenobaculum sp. Y04AAS1 species 547145 0 93 1 Hydrogenobaculum sp. SHO species 547144 93 1 0 Hydrogenobaculum sp. HO Hydrogenobaculum sp. SN 0 1 93 547146 species 2 268 0 genus 75905 136094 species Thermocrinis albus 0 1 50 75906 species Thermocrinis ruber 1 218 0 1 Hydrogenothermaceae 13 5 1397 0 224027 family genus 212790 0 2 886 species 309806 498 1 0 Sulfurihydrogenibium azorense 0 388 1 no rank 2619248 436114 species Sulfurihydrogenibium sp. YO3AOP1 0 388 1 0 498 2 Persephonella 1 1 genus 182899 309805 species Persephonella marina 0 1 497 phylum 200938 0 607 5 0 607 5 24 Chrysiogenetes 1 class 118001 4 583 0 1 Chrysiogenales 29 order 189769 1 Chrysiogenaceae 5 554 3 0 189770 family 8 Desulfurispirillum 1 0 2 549 393029 genus species 936456 0 541 1 Desulfurispirillum indicum phylum 203691 0 28390 55 55 28390 0 1 Spirochaetia 46 class 203692 1643688 order 2110 9 0 Leptospiraceae 4 1 0 9 2110 170 family 171 genus 4 Leptospira 1 0 1912 6 173 species Leptospira interrogans 0 960 1 110 1 0 Leptospira alstonii species 28452 172 species Leptospira biflexa 1 240 0 174 species Leptospira borgpetersenii 0 373 1 1 225 0 Leptospira santarosai species 28183 1 2 Turneriella 2 194 0 338321 genus Turneriella parva 0 1 192 29510 species 136 order 1 Spirochaetales 106 38 15353 0 0 16 3767 family 1643685 138 genus 17 Borrelia 1 0 8 2477 141 species Borrelia parkeri 0 1 148 140 species Borrelia hermsii 0 228 1 Borrelia duttonii 0 696 1 40834 species 0 104 1 Borrelia anserina species 143 629 1 0 Borrelia recurrentis species 44449 species 47466 0 1 194 Borrelia miyamotoi 142 species Borrelia turicatae 1 461 0 genus 64895 0 1290 8 35 Borreliella 1 species 64897 84 1 0 Borreliella bissettii 0 1 287 Borreliella garinii species 29519 139 species Borreliella burgdorferi 0 1 273 species 62088 0 207 1 Borreliella valaisiana 0 1 102 Borreliella bavariensis species 664662 131 1 0 Borreliella afzelii species 29518 1674146 species Borrelia mayonii 0 171 1 0 21 11480 70 Spirochaetaceae 1 family 137 399320 genus 1927 3 0 Sphaerochaeta pleomorpha 0 1 498 1131707 species species 1131703 0 883 1 Sphaerochaeta globosa 273376 species Sphaerochaeta coccoides 0 546 1 genus 146 0 2 936 Spirochaeta thermophila 1 394 0 154 species 46355 species Spirochaeta africana 542 1 0 2 475 0 1 1 Salinispira genus 1616789 1307761 species Salinispira pacifica 0 1 474 genus 1911556 588 1 0 Sediminispirochaeta smaragdinae 0 588 1 55206 species genus 157 12 7484 0 1 164 Treponema Treponema denticola 410 1 0 158 species Treponema azotonutricium 1 499 0 150829 species 215591 species Treponema caldarium 0 1 300 2638727 no rank 0 1017 1 species 1539298 0 1 1017 Treponema sp. OMZ 838 0 969 1 Treponema pedis species 409322 47 1 0 Treponema paraluiscuniculi species 53435 167 species Treponema succinifaciens 1 1478 0 Treponema primitia 436 1 0 88058 species species 81028 1 901 0 Treponema brennaborense species 221027 1 1212 0 Treponema putidum 51 1 0 Treponema pallidum species 160 10881 7 0 1 Brachyspirales 3 order 1643686 family 143786 0 6 10878 Brachyspiraceae 767 1 0 10111 5 858 Brachyspira 1 genus 29521 species 84377 1690 1 0 Brachyspira intermedia Brachyspira pilosicoli 1 3421 0 52584 species 0 1 1527 Brachyspira murdochii species 84378 159 species Brachyspira hyodysenteriae 1 2615 0 phylum 2138240 120 1 0 0 120 1 2138243 class 0 1 120 2138246 order 2138247 family 1 120 0 68335 genus 1 120 0 species 35786 120 1 0 Coprothermobacter proteolyticus clade 1783257 90 17950 0 phylum 74201 26 6672 0 1 Verrucomicrobia 3 1 37 Opitutae 3274 11 0 414999 class 415000 order 1 Opitutales 31 7 2768 0 134623 family Opitutaceae 20 1 0 2737 6 genus 178440 2 459 0 1 Opitutus 2 107709 species Opitutus terrae 457 1 0 0 1349 2 Lacunisphaera 9 1 genus 1961799 species 1838286 1 1340 0 Lacunisphaera limnophila 909 1 0 278955 no rank Opitutaceae bacterium TAV5 909 1 0 794903 species 0 469 3 Puniceicoccales 1 1 order 415001 2 468 0 415002 family genus 442430 0 468 2 Coraliomargarita 7 1 461 1 0 Coraliomargarita akajimensis species 395922 2 1222 0 no rank 417295 0 491 1 Verrucomicrobia bacterium IMCC26134 species 1637999 species 2026799 0 731 1 Verrucomicrobia bacterium 134549 class 58 2 0 1 Candidatus Xiphinematobacter 1 58 2 0 134550 genus 0 57 1 no rank 2648876 Candidatus Xiphinematobacter sp. Idaho Grape 57 1 0 1704307 species 1 1 Verrucomicrobiae 1905 6 0 203494 class 5 1904 0 1 Verrucomicrobiales 12 order 48461 1892 4 0 1 9 Akkermansiaceae family 1647988 1 Akkermansia 4 1883 3 0 239934 genus species 239935 1 987 0 Akkermansia muciniphila species 1679444 892 1 0 Akkermansia glycaniphila class 1955630 0 4 210 717963 order 1 2 Methylacidiphilales 4 210 0 family 717964 0 3 208 511745 genus 1 Methylacidiphilum 1 3 208 0 species 591154 83 1 0 Methylacidiphilum fumariolicum 0 124 1 Methylacidiphilum infernorum species 511746 256845 phylum 3 1678 0 1 Lentisphaeria 9 3 1678 0 1313211 class 132 Victivallales 1 0 2 1669 278082 order 1 1537 0 no rank 1674876 species 2094242 1 1537 0 Victivallales bacterium CCUG 44730 phylum 134625 0 411 4 411 4 0 1 Kiritimatiellae 1 class 1921781 0 3 410 1921782 order 410 3 0 1 2 Kiritimatiellaceae family 1921783 1921784 genus 1 Kiritimatiella 20 408 2 0 species 1307763 1 388 0 Kiritimatiella glycovorans phylum 203682 6953 35 0 1 Planctomycetes 2 666505 class Phycisphaerae 5 1 0 1011 7 440 4 0 1 6 Phycisphaerales order 666506 666507 family Phycisphaeraceae 3 1 0 434 3 666508 genus Phycisphaera 2 1 0 431 2 429 1 0 Phycisphaera mikurensis species 547188 0 566 2 order 2483366 2 566 0 2483367 family 0 2 566 2483368 genus 0 1 364 Phycisphaerae bacterium L21-RPul-D3 species 1940790 species 1941349 0 202 1 Phycisphaerae bacterium ST-PulAB-D4 400 3 0 class 2517206 order 1127829 3 400 0 1 Candidatus Brocadiales 3 1127830 family 1 Candidatus Brocadiaceae 16 2 397 0 1 381 0 genus 380738 Candidatus Kuenenia stuttgartiensis 1 381 0 174633 species 1 Planctomycetia 57 24 5540 0 203683 class 1137 5 0 2691354 order family 2691357 4 770 0 2 Pirellula 1 0 105 2 123 genus Pirellula staleyi 0 103 1 125 species 265488 genus 1 1 Rhodopirellula 665 2 0 Rhodopirellula baltica 0 1 664 265606 species 2691358 family 1 367 0 genus 1676125 0 367 1 1331910 species Thermogutta terrifontis 0 1 367 6 1729 0 2691356 order 6 1729 0 1 8 Isosphaeraceae family 1763524 1763521 genus Paludisphaera 3 1 0 601 2 1387353 species Paludisphaera borealis 598 1 0 437 1 0 genus 127 1 437 0 Isosphaera pallida species 128 Singulisphaera 1 1 0 683 2 466152 genus Singulisphaera acidiphila 0 682 1 466153 species 2691355 order 0 304 3 1 3 Gemmataceae 304 3 0 1914233 family 301 2 0 1 1 Gemmata genus 113 300 1 0 2622970 no rank species 1630693 300 1 0 Gemmata sp. SH-PL17 62 Planctomycetales 1 0 2313 9 112 order 0 8 2251 9 Planctomycetaceae 1 family 126 genus 1649490 0 1 298 0 1 298 Rubinisphaera brasiliensis species 119 genus 1936111 2 626 0 1 Fuerstia 1 species 1891926 0 1 625 Fuerstia marisgermanicae 1 180 0 1649480 genus 120 species Planctopirus limnophila 1 180 0 118 genus 1 6 Planctomyces 3 1138 0 2648843 no rank 1132 2 0 Planctomyces sp. SH-PL62 1 613 0 1636152 species 519 1 0 Planctomyces sp. SH-PL14 species 1632864 204428 phylum 2236 22 0 class 204429 0 2236 22 Chlamydiia 2 1 1963360 order 1 Parachlamydiales 8 8 705 0 92712 family 1 1 Simkaniaceae 171 2 0 170 1 0 34093 genus 83561 species Simkania negevensis 0 1 170 family 92713 0 439 3 Parachlamydiaceae 1 1 83551 genus 0 196 1 species 83552 0 196 1 Parachlamydia acanthamoebae 1 242 0 282132 genus Candidatus Protochlamydia naegleriophila 242 1 0 389348 species family 92714 0 2 87 Waddliaceae 1 1 0 1 86 71666 genus species 71667 0 1 86 Waddlia chondrophila 51291 order 2 Chlamydiales 1 0 1529 13 809 family 0 12 1527 12 1527 0 1113537 no rank 0 1527 12 3 Chlamydia 1 genus 810 species 1457153 0 196 1 Chlamydia gallinacea Chlamydia pecorum 0 1 89 85991 species species 1457141 1 63 0 Chlamydia avium 1 120 0 Chlamydia psittaci species 83554 species 83559 1 68 0 Chlamydia suis Chlamydia abortus 62 1 0 83555 species 83556 species Chlamydia felis 0 1 380 species 83558 351 1 0 Chlamydia pneumoniae species 83560 0 23 1 Chlamydia muridarum Chlamydia trachomatis 0 134 1 813 species 0 1 38 Chlamydia caviae species 83557 phylum 200930 0 8 2724 8 2724 0 1 1 Deferribacteres class 68337 191393 order Deferribacterales 1 1 0 7 2723 family 191394 0 6 2722 11 Deferribacteraceae 1 53572 genus 930 1 0 Deferribacter desulfuricans 0 930 1 197162 species 3 Calditerrivibrio 1 0 1188 2 545865 genus Calditerrivibrio nitroreducens 1185 1 0 477976 species 1 347 0 117999 genus species 118000 1 347 0 Denitrovibrio acetiphilus 2351 genus 0 1 246 2352 species Flexistipes sinusarabici 1 246 0 Proteobacteria 348 1 0 925997 1955 1224 phylum 68525 subphylum 0 187 140961 29547 class 1 Epsilonproteobacteria 43 68 40408 0 213849 order 265 Campylobacterales 1 0 63 39494 1 Helicobacteraceae 2 4942 14 0 72293 family 843 genus 0 264 1 species 844 0 1 264 Wolinella succinogenes 0 12 4676 10 Helicobacter 1 genus 209 species 210 1 2114 0 Helicobacter pylori Helicobacter hepaticus 480 1 0 32025 species Helicobacter felis 0 115 1 214 species Helicobacter typhlonius 0 1 460 76936 species no rank 2593540 0 1 326 222136 species Helicobacter sp. MIT 01-6242 1 326 0 Helicobacter himalayensis 1 140 0 1591088 species 213 species Helicobacter cinaedi 165 1 0 Helicobacter cetorum 1 456 0 138563 species species 212 46 1 0 Helicobacter acinonychis 152 1 0 Helicobacter mustelae species 217 Helicobacter bilis 1 212 0 37372 species 0 748 4 2771471 family genus 286130 2 133 0 1 Sulfuricurvum 1 Sulfuricurvum kujiense 0 1 132 148813 species 615 2 0 genus 202746 Sulfurimonas autotrophica 0 232 1 202747 species species 39766 383 1 0 Sulfurimonas denitrificans 2771472 family 0 1228 3 genus 269260 349 1 0 0 349 1 Nitratifractor salsuginis species 269261 2 879 0 genus 265570 0 301 1 Sulfurovum lithotrophicum species 206403 1 578 0 2646778 no rank Sulfurovum sp. NBC37-1 578 1 0 387093 species 72294 family 579 Campylobacteraceae 1 0 32311 41 Sulfurospirillum 12 1 0 4988 9 57665 genus 194424 species Sulfurospirillum halorespirans 0 218 1 2703 3 0 no rank 2618290 species 1986224 490 1 0 Sulfurospirillum sp. SL2-1 1581011 species Sulfurospirillum sp. UCH001 1619 1 0 594 1 0 Sulfurospirillum sp. JPD-1 species 220622 Sulfurospirillum multivorans 0 468 1 66821 species Sulfurospirillum deleyianum 1 963 0 65553 species 0 226 1 Sulfurospirillum cavolei species 366522 44674 species Sulfurospirillum barnesii 0 398 1 0 4937 5 2321108 no rank 1 712 0 2321187 genus species 1850254 1 712 0 Arcobacter sp. LPB0137 0 1127 1 no rank 2321207 Arcobacter sp. L 0 1127 1 944547 species genus 28196 3 3098 0 1 6 Arcobacter 28197 species Arcobacter butzleri 0 1789 1 28199 species Arcobacter nitrofigilis 0 1303 1 genus 194 0 21807 26 Campylobacter 67 1 Campylobacter fetus 1 962 0 196 species 0 4 1940 no rank 2593542 0 1 663 Campylobacter sp. RM16704 species 1500960 Campylobacter sp. RM8964 0 1 513 1660074 species Campylobacter sp. RM12175 0 1 242 1660076 species 1660073 species Campylobacter sp. RM6137 0 522 1 species 1031542 341 1 0 Campylobacter volucris 0 1 894 Campylobacter insulaenigrae species 260714 species 488546 1 922 0 Campylobacter peloridis 0 800 1 Campylobacter subantarcticus species 497724 Campylobacter hyointestinalis 1 379 0 198 species species 827 0 1 753 Campylobacter ureolyticus species 76517 0 1 346 Campylobacter hominis 1851 1 0 Campylobacter lari species 201 1965231 species Campylobacter pinnipediorum 0 1 1544 0 1 914 Campylobacter sputorum species 206 species 199 0 1 881 Campylobacter concisus 203 1 0 Campylobacter curvus species 200 0 1 149 Campylobacter cuniculorum species 374106 1244531 species Campylobacter iguaniorum 0 296 1 Campylobacter jejuni 0 1 3769 197 species Campylobacter gracilis 151 1 0 824 species species 28898 0 130 1 Campylobacter helveticus Campylobacter avium 408 1 0 522485 species 0 1 314 Campylobacter lanienae species 75658 Campylobacter coli 3793 1 0 195 species Nautiliales 1 1 0 871 4 235899 order 224467 family 0 2 565 191291 genus 1 Nautilia 1 565 2 0 species 244787 0 1 564 Nautilia profundicola 2795691 family 0 1 305 305 1 0 genus 269258 1 305 0 no rank 2624044 Nitratiruptor sp. SB155-2 305 1 0 387092 species 28221 class 1 Deltaproteobacteria 88 100553 119 0 Desulfurellales 1 1 0 798 4 213113 order family 117942 3 797 0 1 Desulfurellaceae 7 genus 33001 422 1 0 33002 species Desulfurella acetivorans 1 422 0 genus 84404 368 1 0 0 368 1 Hippea maritima species 84405 Desulfovibrionales 167 1 0 23 61447 213115 order family 213117 1 298 0 0 1 298 45662 genus species 45663 1 298 0 Desulfohalobium retbaense 213116 family 1 Desulfomicrobiaceae 19 4 1676 0 3 1657 0 1 Desulfomicrobium 13 genus 898 Desulfomicrobium baculatum 0 1 824 899 species 1 820 0 Desulfomicrobium orale species 132132 194924 family 78 Desulfovibrionaceae 1 0 59306 17 genus 41707 0 786 1 786 1 0 Lawsonia intracellularis species 29546 genus 2794998 1 908 0 Desulfovibrio salexigens 908 1 0 880 species 2035811 genus 1 37 Pseudodesulfovibrio 2637 4 0 1716143 species Pseudodesulfovibrio indicus 1218 1 0 Pseudodesulfovibrio profundus 0 1 478 57320 species Pseudodesulfovibrio aespoeensis 0 904 1 182210 species 54230 9 0 1 92 Desulfovibrio genus 872 0 1 1941 Desulfovibrio fairfieldensis species 44742 0 492 1 Candidatus Desulfovibrio trichonymphae species 1725232 2593640 no rank 0 909 1 Desulfovibrio sp. G11 909 1 0 631220 species Desulfovibrio magneticus 0 1118 1 184917 species Desulfovibrio vulgaris 0 1 3120 881 species 1 652 0 Desulfovibrio alaskensis species 58180 1 43829 0 Desulfovibrio piger species 901 Desulfovibrio desulfuricans 1 2077 0 876 species 1 667 0 2582840 genus 0 1 667 Desulfovibrio africanus species 873 order 69541 0 12485 24 221 Desulfuromonadales 1 family 213421 4490 9 0 1 Desulfuromonadaceae 71 genus 18 0 2883 5 Pelobacter 527 1 Pelobacter acetylenicus 0 468 1 29542 species no rank 2620299 1 400 0 species 1842532 0 400 1 Pelobacter sp. SFB93 Pelobacter propionicus 0 1 712 29543 species Pelobacter carbinolicus 1 776 0 19 species 0 1536 3 15 Desulfuromonas 1 genus 890 no rank 2614637 0 892 1 Desulfuromonas sp. DDH964 1 892 0 1823759 species species 1603606 0 1 629 Desulfuromonas soudanensis family 213422 0 7774 14 81 Geobacteraceae 1 28231 genus 104 Geobacter 1 0 7111 11 species 351604 553 1 0 Geobacter uraniireducens 0 740 1 Geobacter metallireducens species 28232 Geobacter daltonii 0 1 463 1203471 species 0 2 2289 no rank 2627627 0 1 886 Geobacter sp. M18 species 443143 1403 1 0 Geobacter sp. M21 species 443144 0 1 618 Geobacter lovleyi species 313985 0 649 1 Geobacter bemidjiensis species 225194 species 345632 1 579 0 Geobacter pickeringii 0 1 623 Geobacter anodireducens species 1340425 1 493 0 Geobacter sulfurreducens species 35554 1 1 Geoalkalibacter 2 582 0 392332 genus 0 581 1 Geoalkalibacter subterraneus species 483547 order 213118 0 5415 18 25 Desulfobacterales 1 1 Desulfobulbaceae 9 9 2495 0 213121 family 2 483 0 1 4 Desulfurivibrio genus 427922 Desulfurivibrio alkaliphilus 479 1 0 427923 species genus 53318 0 519 2 1 Desulfocapsa 1 Desulfocapsa sulfexigens 518 1 0 65555 species 1 Desulfotalea 2 850 2 0 109168 genus 1 848 0 Desulfotalea psychrophila species 84980 1 Desulfobulbus 7 2 634 0 893 genus Desulfobulbus sp. ORNL 627 1 0 1986146 species family 213119 0 2895 8 6 Desulfobacteraceae 1 28222 genus 0 1 460 species 28223 0 1 460 Desulfobacula toluolica 1 Desulfobacterium 1 0 2 510 2295 genus Desulfobacterium autotrophicum 0 509 1 2296 species 896 genus Desulfococcus 5 1 0 1308 3 181663 species Desulfococcus oleovorans 0 527 1 897 species Desulfococcus multivorans 1 776 0 genus 218207 1 611 0 species 259354 0 1 611 Desulfatibacillum alkenivorans 0 4 753 Desulfarculales 5 1 order 453227 453228 family 1 Desulfarculaceae 7 748 3 0 0 2 741 Desulfarculus 9 1 genus 453229 453230 species Desulfarculus baarsii 1 732 0 order 213462 7 1609 0 1 6 Syntrophobacterales 0 2 491 family 213465 genus 29526 2 491 0 1 2 Syntrophobacter species 119484 0 1 489 Syntrophobacter fumaroxidans 1 Syntrophaceae 1 0 4 1112 213468 family genus 2357 0 1 316 species 2358 0 1 316 Desulfomonile tiedjei 308 1 0 43773 genus Syntrophus aciditrophicus 0 308 1 316277 species 487 1 0 genus 60892 60893 species Desulfobacca acetoxidans 0 487 1 29 order Myxococcales 218 1 0 38 17958 26 13409 0 suborder 80811 0 9 4198 Archangiaceae 54 1 family 39 genus 40 2 740 0 1 Stigmatella 11 41 species Stigmatella aurantiaca 729 1 0 47 genus Archangium 3 1 0 1022 2 species 48 0 1019 1 Archangium gephyra 1 Cystobacter 8 2 959 0 42 genus 43 species Cystobacter fuscus 1 951 0 44 genus 1 Melittangium 2 1423 2 0 Melittangium boletus 1 1421 0 83453 species Vulgatibacteraceae 1 1 0 3 504 1524213 family 1 3 Vulgatibacter 503 2 0 1524214 genus Vulgatibacter incomptus 500 1 0 1391653 species 14 Anaeromyxobacteraceae 1 0 2540 5 1524215 family Anaeromyxobacter 44 1 0 2526 4 161492 genus 161493 species Anaeromyxobacter dehalogenans 1 1172 0 2 1310 0 no rank 2620896 species 447217 0 604 1 Anaeromyxobacter sp. K 706 1 0 Anaeromyxobacter sp. Fw109-5 species 404589 31 family 1 25 Myxococcaceae 6167 9 0 0 4039 5 119 Myxococcus 1 genus 32 0 1 576 Myxococcus stipitatus species 83455 744 1 0 Myxococcus xanthus species 34 33 species Myxococcus fulvus 0 1 1754 1297742 species Myxococcus hansupus 1 846 0 Corallococcus 28 1 0 2103 3 83461 genus species 184914 1121 1 0 Corallococcus coralloides 35 species Myxococcus macrosporus 0 1 954 224462 suborder 0 3 990 224464 family 1 5 Kofleriaceae 990 3 0 Haliangium 11 1 0 985 2 162027 genus species 80816 974 1 0 Haliangium ochraceum 80812 suborder 8 3341 0 0 657 3 3 Sandaracinaceae 1 family 1055686 1055688 genus 1 5 Sandaracinus 654 2 0 species 927083 1 649 0 Sandaracinus amylolyticus family 49 0 2684 5 Polyangiaceae 11 1 50 genus Chondromyces 2 1 0 532 2 Chondromyces crocatus 0 1 530 52 species 1 12 Sorangium 2 2141 0 39643 genus 56 species Sorangium cellulosum 2129 1 0 class 28211 185996 541 0 1 Alphaproteobacteria 538 204458 order Caulobacterales 46 1 0 20 7129 0 7083 19 Caulobacteraceae 73 1 family 76892 81440 no rank 0 304 1 Caulobacteraceae bacterium OTSz_A_272 0 1 304 1759059 species 1 Phenylobacterium 13 405 2 0 20 genus species 284016 0 392 1 Phenylobacterium zucineum 0 1995 7 Brevundimonas 47 1 genus 41275 0 244 1 Brevundimonas vesicularis species 41276 0 351 1 Brevundimonas naejangsanensis species 588932 74313 species Brevundimonas subvibrioides 0 368 1 3 985 0 no rank 2622653 Brevundimonas sp. DS20 323 1 0 1532555 species 1938605 species Brevundimonas sp. LM2 0 398 1 Brevundimonas sp. GW460-12-10-14-LB2 0 1 264 1827469 species 0 3843 6 47 Caulobacter 1 genus 75 0 1 615 Caulobacter henricii species 69395 88688 species Caulobacter segnis 0 1 530 no rank 2648921 0 862 1 Caulobacter sp. K31 1 862 0 366602 species species 155892 0 1107 1 Caulobacter vibrioides 0 682 1 Caulobacter mirabilis species 69666 Asticcacaulis 10 1 0 463 2 76890 genus 78587 species Asticcacaulis excentricus 0 453 1 204455 order 1 Rhodobacterales 330 87 27746 0 family 31989 86 27416 0 1 409 Rhodobacteraceae 0 1397 4 135 Rhodovulum 1 genus 34008 2631432 no rank 657 2 0 308754 species Rhodovulum sp. MB263 0 350 1 species 1564506 0 307 1 Rhodovulum sp. P5 35806 species Rhodovulum sulfidophilum 605 1 0 0 2 1186 263377 genus no rank 2640570 563 1 0 1 563 0 Yangia sp. CCB-MM3 species 1792508 species 1229727 623 1 0 Thiobacimonas profunda 0 377 1 188905 genus no rank 2645469 0 1 377 1 377 0 Jannaschia sp. CCS1 species 290400 genus 119541 0 1 281 441209 species Rhodobaca barguzinensis 0 281 1 genus 299261 0 298 1 298 1 0 Tateyamaria omphalii species 299262 genus 302485 5 2714 0 1 Phaeobacter 20 Phaeobacter inhibens 0 1 1089 221822 species 1580596 species Phaeobacter piscinae 1 741 0 species 1844006 1 206 0 Phaeobacter porticola species 60890 0 1 658 Phaeobacter gallaeciensis 74032 genus 0 257 1 Antarctobacter heliothermus 257 1 0 74033 species 1 Leisingera 4 403 2 0 191028 genus species 133924 0 399 1 Leisingera methylohalidivorans 74030 genus Roseovarius 1 1 0 333 2 species 215743 1 332 0 Roseovarius mucosus genus 1649279 0 1 575 species 379347 1 575 0 Ruegeria mobilis genus 92944 0 3 637 Ketogulonicigenium 5 1 278 1 0 Ketogulonicigenium robustum species 92947 species 92945 0 354 1 Ketogulonicigenium vulgare 587 2 0 1 5 Marinovum genus 367771 Marinovum algicola 0 582 1 42444 species 60136 genus 1 Sulfitobacter 5 836 3 0 no rank 196795 1 519 0 Sulfitobacter sp. AM1-D1 1 519 0 1917485 species species 1402135 0 1 312 Sulfitobacter pseudonitzschiae 0 456 3 1 Roseobacter 1 genus 2433 Roseobacter denitrificans 239 1 0 2434 species Roseobacter litoralis 1 216 0 42443 species 0 1 623 2211641 genus species 245188 1 623 0 Loktanella vestfoldensis 1 Sagittula 1 0 637 2 58842 genus 0 636 1 no rank 2624628 Sagittula sp. P11 0 636 1 2009329 species genus 360528 2 615 0 1 Pelagibaca 14 Pelagibaca abyssi 1 601 0 1250539 species genus 478070 0 2020 4 Labrenzia 35 1 2 1285 0 2648686 no rank 2021862 species Labrenzia sp. VG12 0 1 384 1674922 species Labrenzia sp. CP4 901 1 0 Labrenzia aggregata 700 1 0 187304 species genus 265 3719 9 0 1 Paracoccus 48 species 34003 389 1 0 Paracoccus aminophilus 1077935 species Paracoccus zhejiangensis 464 1 0 266 species Paracoccus denitrificans 0 1 893 0 310 1 Paracoccus sp. CBA4604 species 2065379 species 34004 0 461 1 Paracoccus aminovorans 246570 no rank 275 1 0 0 1 275 Paracoccus sp. BM15 species 1529068 species 147645 1 536 0 Paracoccus yeei species 1945662 343 1 0 Paracoccus contaminans 1 1 Dinoroseobacter 2 419 0 309512 genus 0 418 1 Dinoroseobacter shibae species 215813 1097466 genus 1 Defluviimonas 3 458 2 0 455 1 0 Defluviimonas alba species 1335048 58840 no rank 0 2 494 Rhodobacteraceae bacterium QY30 276 1 0 2033435 species 1904441 species Rhodobacteraceae bacterium 0 1 218 genus 245186 1 2 0 Loktanella 436357 genus Thalassococcus 5 1 0 159345 genus 1 261 0 Roseibacterium elongatum 1 261 0 159346 species 1 4 Celeribacter 1159 5 0 875170 genus 1397108 species Celeribacter marinus 84 1 0 339 1 0 Celeribacter indicus species 1208324 1411902 species Celeribacter manganoxidans 0 258 1 1758178 species Celeribacter ethanolicus 0 1 474 genus 1609958 0 335 2 7 Confluentimicrobium 1 0 328 1 no rank 2643318 species 1609966 0 328 1 Confluentimicrobium sp. EMB200-NS6 1284657 genus 0 233 1 species 1284658 0 233 1 Planktomarina temperata 1 Pannonibacter 3 631 2 0 227873 genus species 121719 628 1 0 Pannonibacter phragmitetus 0 2928 5 Rhodobacter 21 1 genus 1060 Rhodobacter sphaeroides 0 1580 1 1063 species 0 2 753 196779 no rank Rhodobacter sp. LPB0142 0 1 341 1850250 species 2033869 species Rhodobacter sp. CZR27 412 1 0 Rhodobacter capsulatus 574 1 0 1061 species 4 700 0 1 Octadecabacter 2 genus 53945 374 1 0 Octadecabacter antarcticus species 1217908 Octadecabacter temperatus 0 184 1 1458307 species Octadecabacter arcticus 140 1 0 53946 species 0 2 113 1 Halocynthiibacter 1 genus 1579315 Halocynthiibacter arcticus 0 1 112 1579316 species 255 1 0 285107 genus 255 1 0 Thioclava nitratireducens species 1915078 0 3 898 Ruegeria 5 1 genus 97050 89184 species Ruegeria pomeroyi 0 730 1 no rank 2625375 0 1 163 292414 species Ruegeria sp. TM1040 163 1 0 0 2 165 Marivivens 1 1 genus 1759396 2622455 no rank 0 1 164 Marivivens sp. JLT3646 0 1 164 1920883 species order 2800059 0 387 2 2 387 0 2800061 family 2 Maricaulis 1 0 2 387 74317 genus 74318 species Maricaulis maris 385 1 0 1138 5 0 order 2800060 69657 family 1 Hyphomonadaceae 5 5 1138 0 genus 85 3 732 0 1 Hyphomonas 17 299 1 0 Hyphomonas neptunium species 81032 2630699 no rank 0 416 1 1906738 species Hyphomonas sp. Mor2 0 1 416 1 401 0 2723 genus 2724 species Hirschia baltica 0 401 1 order 766 0 8207 50 61 Rickettsiales 1 2117 22 0 1 Anaplasmataceae 3 family 942 genus 33993 0 385 4 Neorickettsia 10 1 951 species Neorickettsia sennetsu 0 1 217 species 33994 0 1 34 Neorickettsia helminthoeca 0 124 1 Neorickettsia risticii species 950 696 8 0 952 tribe Wolbachia 3 1 0 8 696 953 genus 2640676 no rank 7 693 0 Wolbachia endosymbiont of Onchocerca ochengi 0 146 1 100901 species species 163164 0 41 1 Wolbachia endosymbiont of Drosophila melanogaster species 77551 0 57 1 Wolbachia endosymbiont of Onchocerca volvulus Wolbachia endosymbiont of Brugia malayi 1 56 0 80849 species species 246273 0 1 46 Wolbachia endosymbiont of Cimex lectularius Wolbachia endosymbiont of Drosophila simulans 0 305 1 77038 species species 66084 0 42 1 Wolbachia sp. wRi 3 Ehrlichia 1 0 6 839 943 genus 4 679 0 106178 species group Ehrlichia ruminantium 0 1 235 779 species species 945 0 246 1 Ehrlichia chaffeensis Ehrlichia canis 0 1 47 944 species species 35795 151 1 0 Ehrlichia muris no rank 106181 0 1 157 0 1 157 Ehrlichia sp. HF species 391036 768 genus 0 194 3 0 1 133 species group 106179 Anaplasma phagocytophilum 0 133 1 948 species 1 24 0 Anaplasma centrale species 769 770 species Anaplasma marginale 37 1 0 1699067 no rank 532 1 0 species 1528098 532 1 0 Rickettsiales bacterium Ac37b 0 25 5346 775 family 0 1 87 genus 2115980 2115978 species Candidatus Phycorickettsia trachydisci 87 1 0 33988 tribe 24 5259 0 1 Rickettsia 355 4011 23 0 780 genus 0 266 2 species group 114292 85 1 0 Rickettsia typhi species 785 species 782 0 1 181 Rickettsia prowazekii species group 1129742 0 381 2 Rickettsia canadensis 1 98 0 788 species 33990 species Rickettsia bellii 283 1 0 17 2816 0 species group 114277 35790 species Rickettsia japonica 1 15 0 species 35791 1 371 0 Rickettsia massiliae 1 16 0 Rickettsia heilongjiangensis species 226665 Rickettsia felis 1 352 0 42862 species Rickettsia rickettsii 0 27 1 783 species species 787 507 1 0 Rickettsia australis Rickettsia rhipicephali 0 1 105 33992 species 33991 species Rickettsia montanensis 0 199 1 species 35794 0 302 1 Rickettsia slovaca Rickettsia akari 1 293 0 786 species 47589 species Rickettsia peacockii 196 1 0 Rickettsia amblyommatis 1 15 0 33989 species 109232 species Rickettsia monacensis 50 1 0 Rickettsia africae 159 1 0 35788 species species 35792 0 1 45 Rickettsia parkeri 781 species Rickettsia conorii 0 1 34 0 1 130 Rickettsia philipii species 1105106 no rank 114295 1 193 0 1 193 0 Rickettsia endosymbiont of Bemisia tabaci species 337479 genus 69474 1248 1 0 Orientia tsutsugamushi 1 1248 0 784 species 151 1 0 1328881 family 151 1 0 genus 411566 0 1 151 Candidatus Midichloria mitochondrii species 234827 order 54526 0 1175 7 1 Pelagibacterales 1 2045213 genus 1 539 0 1925548 species Candidatus Fonsibacter ubiquis 0 1 539 family 1655514 635 5 0 333 2 0 1655516 no rank species 859653 0 1 134 alpha proteobacterium HIMB5 744985 species alpha proteobacterium HIMB59 1 199 0 genus 198251 302 3 0 1 1 Candidatus Pelagibacter 190 1 0 2647897 no rank 1002672 species Candidatus Pelagibacter sp. IMCC9063 190 1 0 1 111 0 Candidatus Pelagibacter ubique species 198252 255473 order 0 2 367 0 367 2 255474 family 3 Parvularcula 1 0 2 367 208215 genus species 208216 1 364 0 Parvularcula bermudensis 27961 82 0 1 Sphingomonadales 118 order 204457 0 59 21183 236 Sphingomonadaceae 1 family 41297 genus 165696 0 5 1463 Novosphingobium 19 1 Novosphingobium resinovorum 477 1 0 158500 species Novosphingobium pentaromativorans 0 310 1 205844 species 1 313 0 Novosphingobium aromaticivorans species 48935 no rank 2644732 0 344 1 702113 species Novosphingobium sp. PP1Y 344 1 0 129 Sphingobium 1 0 5444 15 165695 genus 1 354 0 Sphingobium cloacae species 120107 Sphingobium chlorophenolicum 0 1 553 46429 species species 1332080 0 510 1 Sphingobium baderi 0 1 318 Sphingobium indicum species 332055 species 13690 0 317 1 Sphingobium yanoikuyae no rank 2611147 0 2211 6 Sphingobium sp. EP60837 465 1 0 1855519 species 358 1 0 Sphingobium sp. TKS species 1315974 407020 species Sphingobium sp. MI1205 0 281 1 484429 species Sphingobium sp. YBL2 354 1 0 species 1843368 0 1 429 Sphingobium sp. RAC03 627192 species Sphingobium sp. SYK-6 1 324 0 species 332056 335 1 0 Sphingobium japonicum 76947 species Sphingobium herbicidovorans 1 376 0 0 1 341 Sphingobium hydrophobicum species 1673076 0 619 2 4 Blastomonas 1 genus 150203 2626550 no rank 0 1 615 1842535 species Blastomonas sp. RAC04 615 1 0 2 1245 0 1 Zymomonas 7 genus 541 0 1238 1 Zymomonas mobilis species 542 266 1 0 genus 2709685 Sphingorhabdus flavimaris 0 1 266 266812 species 3875 10 0 1 92 Sphingopyxis genus 165697 species 33052 0 1 310 Sphingopyxis terrae no rank 2614943 0 1641 4 1913578 species Sphingopyxis sp. LPB0140 0 175 1 species 1866325 0 1 405 Sphingopyxis sp. MG 699 1 0 Sphingopyxis sp. 113P3 species 292913 1357916 species Sphingopyxis sp. QXT-31 0 1 362 1 450 0 Sphingopyxis granuli species 267128 species 1515612 0 1 335 Sphingopyxis fribergensis 0 1 309 Sphingopyxis alaskensis species 117207 species 33050 738 1 0 Sphingopyxis macrogoltabida 1 Citromicrobium 26 370 2 0 72173 genus no rank 2630544 0 344 1 344 1 0 Citromicrobium sp. JL477 species 1634516 0 6206 15 Sphingomonas 159 1 genus 13687 no rank 196159 0 2524 6 745310 species Sphingomonas sp. MM-1 0 1 571 Sphingomonas sp. NIC1 0 369 1 1961362 species 1 386 0 Sphingomonas sp. LM7 species 1938607 1030157 species Sphingomonas sp. KC8 0 1 323 Sphingomonas sp. LK11 1 470 0 1390395 species Sphingomonas sp. Cra20 1 405 0 1327635 species 1 439 0 Sphingomonas koreensis species 93064 1 362 0 Sphingomonas melonis species 152682 species 1560345 0 1 282 Sphingomonas panacis Sphingomonas hengshuiensis 0 1 340 1609977 species 1549858 species Sphingomonas taxi 636 1 0 0 868 2 Sphingomonas wittichii 462 1 species 160791 strain 1283312 0 1 406 Sphingomonas sp. DC-6 397260 species Sphingomonas sanxanigenens 1 596 0 genus 1649486 411 2 0 1 1 Rhizorhabdus 410 1 0 Rhizorhabdus dicambivorans species 1850238 0 3 614 4 Sphingorhabdus 1 genus 1434046 0 2 610 2614947 no rank Sphingorhabdus sp. YGSMI21 0 175 1 2077182 species 1806885 species Sphingorhabdus sp. M41 435 1 0 genus 2685927 0 1 434 434 1 0 Sphingomonas sp. JJ-A5 species 1921510 335929 family Erythrobacteraceae 70 1 0 22 6660 0 957 3 Croceicoccus 50 1 genus 1295327 613 1 0 Croceicoccus marinus species 450378 1348774 species Croceicoccus naphthovorans 294 1 0 0 908 2 genus 1855416 0 1 562 Erythrobacter seohaensis species 266951 192812 species Erythrobacter flavus 0 1 346 2800685 genus 208 1 0 species 543877 0 208 1 Altererythrobacter marensis 2800686 genus 0 2 605 Altererythrobacter mangrovi 0 210 1 1982042 species 692370 species Altererythrobacter dongtanensis 0 1 395 0 1077 4 57 Altererythrobacter 1 genus 361177 species 361183 1 183 0 Altererythrobacter epoxidivorans species 476157 513 1 0 Altererythrobacter ishigakiensis species 1267766 1 324 0 Altererythrobacter atlanticus 2800788 no rank 6 1988 0 1111 genus 1 Porphyrobacter 44 1008 3 0 964 2 0 no rank 2683265 Porphyrobacter HT-58-2 0 355 1 2023229 species Porphyrobacter sp. LM 6 0 1 609 1896196 species 3 980 0 1 78 Erythrobacter genus 1041 0 1 644 Erythrobacter litoralis species 39960 Porphyrobacter neustonensis 258 1 0 1112 species 592 2 0 2800681 genus 502682 species Erythrobacter gangjinensis 1 379 0 Erythrobacter atlanticus 0 1 213 1648404 species 2800682 genus 0 255 1 255 1 0 Altererythrobacter namhicola species 645517 Rhodospirillales 194 1 0 64 24104 204441 order 188 Acetobacteraceae 1 0 35 10477 433 family 1 Kozakia 9 257 2 0 153497 genus 1 248 0 Kozakia baliensis species 153496 1602345 genus 3 Parasaccharibacter 1 0 355 2 Parasaccharibacter apium 352 1 0 1510841 species 456 2 0 1 Gluconacetobacter 4 genus 89583 452 1 0 Gluconacetobacter diazotrophicus species 33996 0 3 1292 Roseomonas 33 1 genus 125216 601 1 0 Roseomonas gilardii species 257708 2617492 no rank 0 1 658 2018065 species Roseomonas sp. FDAARGOS_362 1 658 0 genus 522 0 3 600 Acidiphilium 24 1 species 524 0 1 292 Acidiphilium cryptum 0 284 1 Acidiphilium multivorum species 62140 2826 8 0 1 Acetobacter 85 genus 434 65959 species Acetobacter pomorum 0 239 1 species 1076596 1 220 0 Acetobacter persici species 1633874 0 1 176 Acetobacter oryzifermentans 0 319 1 subgenus 151157 0 319 1 Acetobacter aceti species 435 Acetobacter tropicalis 1 365 0 104102 species 0 1102 1 Acetobacter pasteurianus species 438 0 320 1 Acetobacter senegalensis species 446692 16 Granulibacter 1 0 2 634 364409 genus 1 618 0 Granulibacter bethesdensis species 364410 genus 91914 2 517 0 1 20 Asaia species 91915 1 497 0 Asaia bogorensis 1551 5 0 1 89 Komagataeibacter genus 1434011 Komagataeibacter nataicola 1 281 0 265960 species 28448 species Komagataeibacter xylinus 0 1 669 33995 species Komagataeibacter europaeus 1 332 0 Komagataeibacter medellinensis 0 1 180 1177712 species 415 2 0 1 Neoasaia 1 genus 320496 0 1 414 Neoasaia chiangmaiensis species 320497 3 1386 0 1 35 Gluconobacter genus 441 species 318683 337 1 0 Gluconobacter albidus species 442 0 1014 1 Gluconobacter oxydans Rhodospirillaceae 170 1 0 13433 28 41295 family 1543704 genus 1 Niveispirillum 9 742 2 0 1 733 0 Niveispirillum cyanobacteriorum species 1612173 1182780 genus 1 422 0 no rank 2685734 0 422 1 Magnetospira sp. QH-2 1 422 0 1288970 species 0 2 290 Pararhodospirillum 2 1 genus 1612157 species 1084 288 1 0 Pararhodospirillum photometricum 0 635 1 1263978 genus 1 635 0 Candidatus Endolissoclinum faulkneri species 1263979 171436 genus 1 15 Tistrella 2 666 0 171437 species Tistrella mobilis 651 1 0 1 Nitrospirillum 17 998 2 0 1543705 genus 28077 species Nitrospirillum amazonense 0 981 1 3 967 0 1 3 Thalassospira genus 168934 0 404 1 Thalassospira xiamenensis species 220697 2048283 species Thalassospira sp. CSC3H3 1 560 0 191 genus Azospirillum 140 1 0 5 4824 0 1 1937 Azospirillum lipoferum species 193 species 1226968 0 1 462 Azospirillum humicireducens 192 species Azospirillum brasilense 1 1451 0 Azospirillum thiophilum 1 834 0 528244 species 261 1 0 1804663 genus 1549855 species Haematospirillum jordaniae 1 261 0 1 Magnetospirillum 39 2402 5 0 13134 genus no rank 2617991 2 1037 0 species 1663591 0 517 1 Magnetospirillum sp. XM-1 520 1 0 Magnetospirillum sp. ME-1 species 1639348 1 632 0 Magnetospirillum magneticum species 84159 1 694 0 Magnetospirillum gryphiswaldense species 55518 genus 1081 0 3 1056 8 Rhodospirillum 1 Rhodospirillum centenum 1 566 0 34018 species 0 482 1 Rhodospirillum rubrum species 1085 1191478 order 0 303 2 2 303 0 family 1191479 0 303 2 2 Magnetococcus 1 genus 162171 1124597 species Magnetococcus marinus 0 301 1 1 14 Holosporales 1243 5 0 1921002 order 1 Caedimonadaceae 1 2 703 0 2100208 family 0 1 702 1509243 genus 1509244 species Candidatus Nucleicultrix amoebiphila 1 702 0 family 44746 0 1 346 204454 no rank 0 1 346 species 86106 346 1 0 endosymbiont of Acanthamoeba sp. UWC8 1777752 family 0 180 1 0 1 180 genus 1521255 species 91604 180 1 0 Candidatus Paracaedibacter acanthamoebae 356 order Rhizobiales 668 1 0 207 83239 69277 family 47 Phyllobacteriaceae 1 0 19 7766 31988 genus 1 Aminobacter 9 2 853 0 83263 species Aminobacter aminovorans 0 1 844 genus 245876 2 802 0 1 Nitratireductor 14 species 472175 788 1 0 Nitratireductor basaltis 3 Hoeflea 1 0 2 343 274591 genus no rank 2614931 1 340 0 Hoeflea sp. IMCC20628 340 1 0 1620421 species 449972 genus 1 3 Chelativorans 2 733 0 no rank 2643807 730 1 0 0 730 1 Chelativorans sp. BNC1 species 266779 genus 68287 4225 9 0 1 96 Mesorhizobium 536018 species Mesorhizobium australicum 1 367 0 387 1 0 Mesorhizobium amorphae species 71433 species 2066070 518 1 0 Mesorhizobium japonicum no rank 325217 0 1 666 666 1 0 Mesorhizobium sp. WSM1497 species 278153 1670800 species Mesorhizobium sp. B7 0 1 380 467 1 0 Mesorhizobium loti species 381 39645 species Mesorhizobium ciceri 1 804 0 593909 species Mesorhizobium opportunistum 1 540 0 0 1 763 genus 28100 Phyllobacterium zundukense 1 763 0 1867719 species 0 2 255 119043 family 4 Parvibaculum 1 0 255 2 256616 genus 0 251 1 Parvibaculum lavamentivorans species 256618 0 3166 20 Brucellaceae 10 1 family 118882 4 Ochrobactrum 1 0 1695 5 528 genus Ochrobactrum pituitosum 486 1 0 571256 species Ochrobactrum sp. A44 0 1 314 271865 species Ochrobactrum anthropi 0 1 503 529 species 419475 species Ochrobactrum pseudogrignonense 1 388 0 genus 234 14 1461 0 1 640 Brucella species 36855 0 1 79 Brucella canis no rank 2632610 0 287 4 1885919 species Brucella sp. 141012304 0 1 111 Brucella sp. 09RB8471 0 57 1 1149952 species species 1891098 22 1 0 Brucella sp. 2002734562 0 1 97 Brucella sp. 09RB8910 species 1844051 29459 species Brucella melitensis 0 48 1 0 1 149 Brucella vulpis species 981386 235 species Brucella abortus 1 38 0 0 13 1 Brucella ovis species 236 0 1 30 Brucella suis species 29461 species 444163 0 15 1 Brucella microti 1 82 0 Brucella ceti species 120577 species 120576 0 80 1 Brucella pinnipedialis family 82115 54 27843 0 1 320 Rhizobiaceae genus 34019 6 1182 0 1 Liberibacter 23 1273132 species Liberibacter crescens 283 1 0 34021 species Candidatus Liberibacter asiaticus 349 1 0 1 117 0 Candidatus Liberibacter americanus species 309868 34020 species Candidatus Liberibacter africanus 0 153 1 Candidatus Liberibacter solanacearum 1 257 0 556287 species 5243 10 0 227292 no rank 106591 genus Ensifer 7 1 0 3 1174 species 716925 516 1 0 Ensifer sojae Ensifer adhaerens 651 1 0 106592 species genus 28105 0 7 4069 Sinorhizobium 49 1 382 species Sinorhizobium meliloti 1 946 0 0 1 1007 663276 species group species 380 0 1 1007 Sinorhizobium fredii no rank 2613772 0 1000 2 0 1 702 Sinorhizobium sp. RAC02 species 1842534 species 794846 1 298 0 Sinorhizobium sp. CCBAU 05631 Sinorhizobium medicae 283 1 0 110321 species species 194963 0 1 784 Sinorhizobium americanum 323620 genus 1 Shinella 8 697 2 0 0 1 689 2643062 no rank 0 1 689 Shinella sp. HZN7 species 879274 35 20401 0 227290 no rank 1525371 genus Neorhizobium 6 1 0 2 907 species 399 0 901 1 Neorhizobium galegae genus 357 0 7 4819 42 Agrobacterium 1 1183400 species group 2509 2 0 588 1 0 Agrobacterium fabrum species 1176649 species 358 1921 1 0 Agrobacterium tumefaciens 2 1152 0 2632611 no rank species 1842536 0 442 1 Agrobacterium sp. RAC06 710 1 0 Agrobacterium sp. H13-3 species 861208 Agrobacterium rhizogenes 447 1 0 359 species 373 species Agrobacterium vitis 0 669 1 genus 379 0 14675 26 736 Rhizobium 1 species 398 1 398 0 Rhizobium tropici Rhizobium phaseoli 1 961 0 396 species species 29449 0 1 1962 Rhizobium etli 20 5948 0 2613769 no rank 2020312 species Rhizobium sp. CIAT894 365 1 0 502 1 0 Rhizobium sp. IE4771 species 1301032 Rhizobium sp. N731 0 1 47 1703966 species Rhizobium sp. N741 0 2 1 1703967 species Rhizobium sp. IRBG74 0 491 1 424182 species species 2020313 0 57 1 Rhizobium sp. TAL182 species 1981173 1 355 0 Rhizobium sp. NXC14 0 1 3 Rhizobium sp. N1341 species 1703962 Rhizobium sp. Y9 0 1 698 1914541 species 0 459 1 Rhizobium sp. 10195 species 2028343 Rhizobium sp. Kim5 455 1 0 2020311 species 1703960 species Rhizobium sp. N113 1 1 0 Rhizobium sp. N1314 1 47 0 1703961 species species 2048897 566 1 0 Rhizobium sp. NXC24 species 1571470 0 702 1 Rhizobium sp. ACO-34A species 1703965 0 1 1 Rhizobium sp. N6212 species 1869170 0 1 468 Rhizobium sp. S41 Rhizobium sp. N324 334 1 0 1703969 species 1703964 species Rhizobium sp. N621 0 1 1 0 394 1 Rhizobium sp. NT-26 species 1125847 56730 species Rhizobium gallicum 0 1 1480 species 384 3190 1 0 Rhizobium leguminosarum 41294 family 202 Bradyrhizobiaceae 1 0 25 14417 200 Bradyrhizobium 1 0 7472 11 374 genus 548 1 0 Bradyrhizobium oligotrophicum species 44255 2631580 no rank 0 6 3580 species 288000 622 1 0 Bradyrhizobium sp. BTAi1 2057741 species Bradyrhizobium sp. SK17 0 1 695 Bradyrhizobium sp. ORS 278 717 1 0 114615 species species 115808 0 525 1 Bradyrhizobium sp. ORS 285 1223566 species Bradyrhizobium sp. CCGE-LA001 0 625 1 species 376 0 1 396 Bradyrhizobium sp. Bradyrhizobium icense 0 1 605 1274631 species species 1355477 0 1469 1 Bradyrhizobium diazoefficiens species 375 1070 1 0 Bradyrhizobium japonicum 1 Variibacter 3 316 2 0 1649510 genus 1333996 species Variibacter gotjawalensis 313 1 0 genus 85413 5 2594 0 1 44 Bosea Bosea vaviloviae 0 1 940 1526658 species 2653178 no rank 0 1610 3 1 484 0 Bosea sp. PAMC 26642 species 1792307 0 556 1 Bosea sp. RAC05 species 1842539 2015316 species Bosea sp. AS-1 0 570 1 1 76 Rhodopseudomonas 3053 2 0 1073 genus species 1076 0 1 2977 Rhodopseudomonas palustris 911 genus 1 Nitrobacter 5 3 413 0 0 1 248 Nitrobacter hamburgensis species 912 Nitrobacter winogradskyi 160 1 0 913 species genus 40136 1 367 0 40137 species Oligotropha carboxidovorans 1 367 0 0 6 1164 119042 no rank 1 5 Hartmannibacter 512 2 0 1572860 genus 1482074 species Hartmannibacter diazotrophicus 0 1 507 genus 1484898 234 2 0 1 Methyloceanibacter 1 species 1384459 1 233 0 Methyloceanibacter caenitepidi 1734920 genus 1 12 Pseudorhodoplanes 418 2 0 Pseudorhodoplanes sinuspersici 1 406 0 1235591 species family 335928 2009 7 0 1 Xanthobacteraceae 23 9 Xanthobacter 1 0 2 528 279 genus Xanthobacter autotrophicus 0 519 1 280 species 152053 genus 62 Starkeya 1 0 587 2 Starkeya novella 0 525 1 921 species 871 2 0 1 Azorhizobium 7 genus 6 7 species Azorhizobium caulinodans 1 864 0 119045 family 40 Methylobacteriaceae 1 0 15 8925 genus 2282523 2546 3 0 Methylobacterium zatmanii 458 1 0 29429 species 408 species Methylobacterium extorquens 1320 1 0 223967 species Methylobacterium populi 0 1 768 407 genus 1 Methylobacterium 194 9 5815 0 0 3 2289 2615210 no rank Methylobacterium sp. AMS5 0 1 760 925818 species 755 1 0 Methylobacterium sp. 4-46 species 426117 Methylobacterium sp. C1 774 1 0 1479019 species 707 1 0 Methylobacterium aquaticum species 270351 0 845 1 Methylobacterium radiotolerans species 31998 1 668 0 Methylobacterium phyllosphaerae species 418223 0 702 1 Methylobacterium oryzae species 334852 species 114616 410 1 0 Methylobacterium nodulans genus 186650 0 2 524 5 Microvirga 1 species 1882682 519 1 0 Microvirga ossetica 7 2101 0 1 Aurantimonadaceae 8 family 255475 293088 genus 1 109 Martelella 4 1627 0 0 493 1 2629616 no rank species 686597 1 493 0 Martelella sp. AD-3 1 478 0 Martelella endophytica species 1486262 293089 species Martelella mediterranea 0 547 1 414371 genus Aureimonas 6 1 0 2 466 no rank 2615206 0 460 1 1349819 species Aureimonas sp. AU20 1 460 0 1 4 Methylocystaceae 6 1357 0 31993 family 133 genus 22 Methylocystis 1 0 866 3 655015 species Methylocystis bryophila 1 395 0 0 449 1 2625913 no rank species 187303 1 449 0 Methylocystis sp. SC2 487 2 0 1 Methylosinus 7 genus 425 426 species Methylosinus trichosporium 0 480 1 837 4 0 family 45404 120652 genus 10 Methylocella 1 0 256 2 Methylocella silvestris 0 1 246 199596 species 532 genus 6 Beijerinckia 1 0 2 581 species 533 0 575 1 Beijerinckia indica 1 Hyphomicrobiaceae 30 4876 19 0 45401 family 1 Pelagibacterium 1 2 237 0 1082930 genus Pelagibacterium halotolerans 0 236 1 531813 species genus 119044 346 2 0 1 Filomicrobium 1 1 345 0 Candidatus Filomicrobium marinum species 1608628 genus 1068 0 262 2 Rhodomicrobium 7 1 Rhodomicrobium vannielii 0 255 1 1069 species 617 2 0 1 Rhodoplanes 17 genus 29407 1 600 0 no rank 2619116 Rhodoplanes sp. Z2-YC6860 0 600 1 674703 species genus 59282 0 379 2 9 Blastochloris 1 0 370 1 Blastochloris viridis species 1079 1 Devosia 42 1595 4 0 46913 genus 196773 no rank 0 3 1553 0 1 433 Devosia sp. I507 species 2083786 species 1736675 407 1 0 Devosia sp. A16 species 1643450 713 1 0 Devosia sp. H5989 0 1410 4 Hyphomicrobium 8 1 genus 81 species 53399 568 1 0 Hyphomicrobium denitrificans Hyphomicrobium nitrativorans 0 524 1 1427356 species 2619925 no rank 0 1 310 717785 species Hyphomicrobium sp. MC1 1 310 0 Chelatococcaceae 3 1 0 1017 4 2036754 family genus 28209 1014 3 0 1 Chelatococcus 23 no rank 2638111 1 607 0 0 607 1 Chelatococcus sp. CO-6 species 1702325 species 444444 1 384 0 Chelatococcus daeguensis Bartonellaceae 25 1 0 18 6838 772 family 773 genus 1 25 Bartonella 17 6813 0 Bartonella clarridgeiae 0 1 348 56426 species Bartonella ancashensis 1 857 0 1318743 species 0 511 1 Bartonella australis species 388640 species 85701 1 664 0 Bartonella tribocorum species 33047 175 1 0 Bartonella vinsonii species 774 1 409 0 Bartonella bacilliformis 33045 species Bartonella grahamii 265 1 0 Bartonella henselae 0 1 542 38323 species species 1686310 0 490 1 Bartonella apis 2645622 no rank 0 2438 6 species 1933907 0 312 1 Bartonella sp. JB63 242 1 0 Bartonella sp. 1-1C species 515256 0 312 1 Bartonella sp. JB15 species 1933906 1 120 0 Bartonella sp. Raccoon60 species 1933912 0 1 1205 Bartonella sp. WD16.2 species 1933904 Bartonella sp. A1379B 1 247 0 1933910 species 803 species Bartonella quintana 0 89 1 0 7 2459 82117 no rank 5 Polymorphum 1 0 386 2 991903 genus 381 1 0 Polymorphum gilvum species 991904 0 1 514 62654 clade genus 767891 1 514 0 Candidatus Puniceispirillum marinum 0 1 514 767892 species genus 1632780 0 2 1224 Phreatobacter 21 1 Phreatobacter sp. S-12 1 1203 0 1868589 species 2 335 0 1 Micavibrio 2 genus 213485 Micavibrio aeruginosavorus 0 333 1 349221 species 816 5 0 1 1 Zetaproteobacteria class 580370 order 580371 0 4 815 Mariprofundales 5 1 family 580372 0 810 3 1 Mariprofundaceae 1 genus 377315 2 809 0 1921086 species Mariprofundus aestuarium 1 574 0 Mariprofundus ferrinatatus 0 1 235 1921087 species 2 Oligoflexia 1 0 2363 9 1553900 class Bacteriovoracales 2 1 0 3 715 2024979 order 1 358 0 family 263369 358 1 0 146784 genus 0 358 1 Bacteriovorax stolpii species 960 family 1652132 0 355 1 1 355 0 genus 1652133 97084 species Halobacteriovorax marinus 1 355 0 213481 order Bdellovibrionales 2 1 0 1646 5 family 213483 1644 4 0 1 Bdellovibrionaceae 3 1 7 Bdellovibrio 3 1641 0 958 genus species 959 1449 1 0 Bdellovibrio bacteriovorus 453816 species Bdellovibrio exovorus 1 185 0 1070 6 0 class 1807140 0 1070 6 Acidithiobacillales 5 1 order 225057 family 225058 0 5 1065 Acidithiobacillaceae 6 1 0 1059 4 3 Acidithiobacillus 1 genus 119977 Acidithiobacillus caldus 333 1 0 33059 species 0 1 354 Acidithiobacillus ferrivorans species 160808 species 920 1 369 0 Acidithiobacillus ferrooxidans 289 Betaproteobacteria 1 0 165298 343 28216 class 80840 order 1 Burkholderiales 978 130704 230 0 family 80864 0 25490 57 Comamonadaceae 368 1 1 Delftia 87 3706 5 0 80865 genus Delftia acidovorans 0 940 1 80866 species 2 1777 0 no rank 2613839 Delftia sp. HK171 0 789 1 1920191 species 0 1 988 Delftia sp. Cs1-4 species 742013 species 180282 1 902 0 Delftia tsuruhatensis genus 28065 0 5 2123 105 Rhodoferax 1 Rhodoferax ferrireducens 0 1 701 192843 species 1484693 species Rhodoferax saidenbachensis 0 1 391 Rhodoferax antarcticus 0 294 1 81479 species 1842727 species Rhodoferax koreense 0 632 1 1 Candidatus Symbiobacter 1 0 2 192 1436289 genus 1436290 species Candidatus Symbiobacter mobilis 191 1 0 1 1 Diaphorobacter 358 2 0 238749 genus 0 1 357 Diaphorobacter polyhydroxybutyrativorans species 1546149 0 3 719 4 Limnohabitans 1 genus 665874 2626134 no rank 2 715 0 species 1678129 0 1 491 Limnohabitans sp. 103DPR2 1678128 species Limnohabitans sp. 63ED37-2 1 224 0 460 1 0 genus 2678886 1 460 0 Melaminivora sp. SC2-7 species 2116657 1 10 Polaromonas 3 890 0 52972 genus no rank 2638319 0 1 366 0 1 366 Polaromonas sp. JS666 species 296591 514 1 0 Polaromonas naphthalenivorans species 216465 genus 1649468 0 471 2 14 Melaminivora 1 2641902 no rank 1 457 0 species 2109913 0 457 1 Melaminivora sp. SC2-9 219181 genus Ottowia 5 1 0 3 810 2645081 no rank 0 323 1 species 1658672 1 323 0 Ottowia sp. oral taxon 894 species 2109914 1 482 0 Ottowia sp. KADR8-3 201096 genus 1 Alicycliphilus 3 948 2 0 179636 species Alicycliphilus denitrificans 0 1 945 genus 34072 0 3534 5 46 Variovorax 1 0 700 1 Variovorax boronicumulans species 436515 663243 no rank 0 2 1100 0 1 413 Variovorax sp. PAMC 28711 species 1795631 Variovorax sp. PMC12 1 687 0 2126319 species species 34073 1 1688 0 Variovorax paradoxus 47420 genus 19 Hydrogenophaga 1 0 4 1511 2 1059 0 2610897 no rank 795665 species Hydrogenophaga sp. PBC 0 634 1 1 425 0 Hydrogenophaga sp. RAC07 species 1842537 species 1763535 0 433 1 Hydrogenophaga crassostreae Acidovorax 144 1 0 9 4493 12916 genus 0 423 1 Acidovorax sp. NA3 species 553814 Acidovorax citrulli 1 532 0 80869 species 769 1 0 Acidovorax avenae species 80867 no rank 2684926 4 2167 0 1 376 0 Acidovorax sp. T1 species 1858609 species 1842533 0 690 1 Acidovorax sp. RAC01 species 358220 0 1 694 Acidovorax sp. KKS102 232721 species Acidovorax sp. JS42 0 407 1 721785 species Acidovorax ebreus 0 458 1 352450 genus 0 502 1 2109915 species Simplicispira sp. SC1-8 1 502 0 364316 genus 0 1 458 Verminephrobacter eiseniae 0 1 458 364317 species 283 genus 1 12 Comamonas 2174 4 0 1 1239 0 Comamonas testosteroni species 285 species 1082851 476 1 0 Comamonas serinivorans species 225992 0 447 1 Comamonas kerstersii genus 2490452 0 2 573 species 1458426 1 302 0 Comamonadaceae bacterium B1 Comamonadaceae bacterium A1 0 1 271 1458425 species 1200 2 0 1 6 Ramlibacter genus 174951 species 94132 0 1 1194 Ramlibacter tataouinensis 75682 family 1 Oxalobacteraceae 82 28 24886 0 846 genus 0 1 11296 species 847 0 11296 1 Oxalobacter formigenes 149698 genus 62 Massilia 1 0 3533 6 Massilia putida 0 719 1 1141883 species 0 2 1438 no rank 2609279 Massilia sp. NR 4-1 736 1 0 1678028 species Massilia sp. WG5 0 702 1 1707785 species species 2045208 550 1 0 Massilia sp. B2 Massilia sp. ZMN-3 764 1 0 2072590 species 303379 genus 1 5 Herminiimonas 3 1073 0 Herminiimonas arsenitoxidans 414 1 0 1809410 species Herminiimonas arsenicoxydans 0 1 654 204773 species 202907 genus 1 33 Collimonas 2052 4 0 Collimonas arenae 0 778 1 279058 species 0 632 1 Collimonas pratensis species 279113 1 609 0 Collimonas fungivorans species 158899 Herbaspirillum 88 1 0 6 3660 963 genus species 92645 831 1 0 Herbaspirillum frisingense no rank 2624150 606 1 0 1 606 0 Herbaspirillum sp. meg3 species 2025949 Herbaspirillum seropedicae 1 782 0 964 species species 80842 1 784 0 Herbaspirillum rubrisubalbicans 341045 species Herbaspirillum hiltneri 0 569 1 0 3190 7 Janthinobacterium 37 1 genus 29580 no rank 2610881 0 4 1703 1938606 species Janthinobacterium sp. LM6 516 1 0 0 743 1 Janthinobacterium sp. 1_2014MBL_MicDiv species 1644131 Janthinobacterium sp. B9-8 229 1 0 1236179 species 375286 species Janthinobacterium sp. Marseille 0 215 1 1 699 0 Janthinobacterium agaricidamnosum species 55508 368607 species Janthinobacterium svalbardensis 1 751 0 0 2 2594 no rank 80841 species 1469502 288 1 0 Burkholderiales bacterium GJ-E10 Burkholderiales bacterium YL45 0 2306 1 1834205 species family 119060 0 84 49353 271 Burkholderiaceae 1 genus 106589 9 5705 0 1 176 Cupriavidus 1528 2 0 2640874 no rank Cupriavidus sp. USMAA2-4 1 804 0 876364 species 724 1 0 Cupriavidus sp. USMAHM13 species 1389192 Cupriavidus necator 1 1058 0 106590 species species 248026 502 1 0 Cupriavidus pinatubonensis Cupriavidus basilensis 0 1 566 68895 species species 367825 1 733 0 Cupriavidus sp. USMAA1020 Cupriavidus metallidurans 0 1 581 119219 species 82541 species Cupriavidus gilardii 561 1 0 565 1 0 1827195 genus 758793 species Burkholderia sp. RPE64 1 565 0 genus 44013 0 4 1001 Polynucleobacter 2 1 species 576610 273 1 0 Polynucleobacter necessarius species 1835254 0 192 1 Polynucleobacter duraquae 0 1 534 Polynucleobacter asymbioticus species 576611 genus 1822464 12 6277 0 1 Paraburkholderia 101 0 388 1 Paraburkholderia fungorum species 134537 261302 species Paraburkholderia phytofirmans 1 634 0 Paraburkholderia phenoliruptrix 0 386 1 252970 species 509 1 0 Paraburkholderia hospita species 169430 1 530 0 Paraburkholderia terrae species 311230 species 75105 1 802 0 Paraburkholderia caribensis species 148447 1 571 0 Paraburkholderia phymatum 0 428 1 2615204 no rank 428 1 0 Paraburkholderia sp. SOS3 species 1926494 0 1 909 Paraburkholderia aromaticivorans species 2026199 36873 species Paraburkholderia xenovorans 0 1 592 948107 species Paraburkholderia sprentiae 1 427 0 genus 2571159 0 1 348 412963 species Paraburkholderia rhizoxinica 1 348 0 genus 48736 0 5 4654 79 Ralstonia 1 105219 species Ralstonia mannitolilytica 584 1 0 species 329 0 1098 1 Ralstonia pickettii species 305 1 2177 0 Ralstonia solanacearum 190721 species Ralstonia insidiosa 716 1 0 genus 93217 0 3331 10 112 Pandoraea 1 Pandoraea pnomenusa 1 401 0 93220 species species 93218 0 494 1 Pandoraea apista 656179 species Pandoraea faecigallinarum 0 327 1 species 445709 247 1 0 Pandoraea thiooxydans 1 342 0 Pandoraea vervacti species 656178 species 93219 0 338 1 Pandoraea norimbergensis species 93222 0 1 367 Pandoraea sputorum 93221 species Pandoraea pulmonicola 1 328 0 Pandoraea oxalativorans 0 375 1 573737 species 32008 genus 1 1286 Burkholderia 41 27201 0 87882 species group 0 14414 19 Burkholderia lata 1 2377 0 482957 species Burkholderia stabilis 0 1 512 95485 species Burkholderia metallica 1 356 0 488729 species Burkholderia pseudomultivorans 381 1 0 1207504 species 488446 species Burkholderia latens 0 1 342 1 270 0 Burkholderia seminalis species 488731 732 1 0 Burkholderia ambifaria species 152480 95486 species Burkholderia cenocepacia 0 1 1683 species 488732 385 1 0 Burkholderia diffusa Burkholderia pyrrocinia 173 1 0 60550 species 1503055 species Burkholderia territorii 0 292 1 Burkholderia contaminans 0 557 1 488447 species 0 1440 1 Burkholderia ubonensis species 101571 species 152500 0 1 249 Burkholderia dolosa Burkholderia cepacia 0 1896 1 292 species 87883 species Burkholderia multivorans 0 1 1088 species 1503054 0 567 1 Burkholderia stagnalis species 265293 0 1 443 [Pseudomonas] mesoacidophila Burkholderia vietnamiensis 0 1 671 60552 species Burkholderia plantarii 1 568 0 41899 species 0 4751 11 2613784 no rank 416344 species Burkholderia sp. KJ006 1 346 0 640510 species Burkholderia sp. CCGE1001 1 591 0 640512 species Burkholderia sp. CCGE1003 0 637 1 0 314 1 Burkholderia sp. 2002721687 species 1468409 0 1 323 Burkholderia sp. Bp5365 species 1740162 Burkholderia sp. PAMC 28687 0 284 1 1795874 species species 1795043 0 1 279 Burkholderia sp. PAMC 26561 species 1678678 580 1 0 Burkholderia sp. HB1 species 1097668 1 526 0 Burkholderia sp. YI23 1 339 0 Burkholderia sp. Bp7605 species 1740163 Burkholderia sp. RPE67 1 532 0 758796 species 1 1257 0 Burkholderia gladioli species 28095 111527 species group 3957 7 0 species 1637831 0 462 1 Burkholderia sp. MSMB617WGS species 28450 0 1 946 Burkholderia pseudomallei Burkholderia thailandensis 0 774 1 57975 species Burkholderia sp. MSMB0266 484 1 0 1637837 species species 1637841 0 1 562 Burkholderia sp. MSMB0852 species 13373 258 1 0 Burkholderia mallei 342113 species Burkholderia oklahomensis 1 471 0 337 species Burkholderia glumae 0 968 1 6497 17 0 224471 no rank 935 2 0 1 Roseateles 8 genus 93681 76731 species Roseateles depolymerans 0 927 1 28067 genus 5 Rubrivivax 1 0 2 864 28068 species Rubrivivax gelatinosus 0 1 859 genus 65047 0 882 2 Mitsuaria 29 1 no rank 2648776 0 853 1 species 1658665 0 853 1 Mitsuaria sp. 7 32012 genus 4 Thiomonas 1 0 2 903 926 species Thiomonas intermedia 0 899 1 413882 species [Polyangium] brachysporum 1 632 0 1 33 Rhizobacter 731 2 0 212743 genus species 946333 698 1 0 Rhizobacter gummiphilus 517 2 0 1 Leptothrix 10 genus 88 Leptothrix cholodnii 1 507 0 34029 species genus 318147 0 2 582 Paucibacter 7 1 0 1 575 no rank 2642959 1768242 species Paucibacter sp. KCTC 42545 1 575 0 2 451 0 1 21 Methylibium genus 316612 105560 species Methylibium petroleiphilum 1 430 0 Alcaligenaceae 180 1 0 20906 41 506 family Achromobacter 241 1 0 6 6962 222 genus Achromobacter xylosoxidans 1 2915 0 85698 species 2626865 no rank 1 703 0 1758194 species Achromobacter sp. AONIH1 0 1 703 0 574 1 Achromobacter insolitus species 217204 0 1322 1 Achromobacter denitrificans species 32002 Achromobacter spanius 1207 1 0 217203 species 507 genus Alcaligenes 2 1 0 889 2 Alcaligenes faecalis 0 887 1 511 species 1921582 genus 6 Orrella 1 0 606 2 600 1 0 Orrella dioscoreae species 1851544 908 3 0 1 Taylorella 1 genus 29574 29575 species Taylorella equigenitalis 610 1 0 84590 species Taylorella asinigenitalis 0 1 297 1 346 0 genus 1472344 346 1 0 Basilea psittacipulmonis species 1472345 genus 359336 0 560 2 Castellaniella 6 1 species 75697 0 554 1 Castellaniella defragrans 0 355 1 genus 1100891 643674 species Paenalcaligenes hominis 1 355 0 290425 genus 7 Advenella 1 0 3 747 1 237 0 Advenella kashmirensis species 310575 Advenella mimigardefordensis 0 503 1 302406 species 517 genus Bordetella 214 1 0 17 8896 1331258 species Bordetella pseudohinzii 1 596 0 Bordetella bronchiseptica 0 993 1 518 species 0 459 1 Bordetella pertussis species 520 1 541 0 Bordetella parapertussis species 519 0 553 1 Bordetella flabilis species 463014 Bordetella trematum 0 863 1 123899 species Bordetella genomosp. 13 0 1 494 463040 species species 35814 0 1 262 Bordetella holmesii 103855 species Bordetella hinzii 606 1 0 1416806 species Bordetella genomosp. 8 0 1 506 no rank 2630031 0 440 1 species 1697043 1 440 0 Bordetella sp. H567 1416803 species Bordetella genomosp. 9 423 1 0 Bordetella avium 0 258 1 521 species 0 1 486 Bordetella petrii species 94624 species 463024 1 603 0 Bordetella genomosp. 6 species 463025 599 1 0 Bordetella bronchialis 2 246 0 1 4 Pusillimonas genus 305976 242 1 0 2640016 no rank 0 242 1 Pusillimonas sp. T7-7 species 1007105 genus 90243 211 1 0 0 211 1 Oligella urethralis species 90245 206351 order Neisseriales 162 1 0 35 15746 9198 21 0 1 49 Neisseriaceae family 481 genus 482 12 6032 0 1 176 Neisseria Neisseria gonorrhoeae 0 272 1 485 species 490 species Neisseria sicca 0 745 1 Neisseria elongata 0 1 264 495 species 756 1 0 Neisseria mucosa species 488 species 326523 0 474 1 Neisseria zoodegmatis 0 664 1 Neisseria lactamica species 486 0 1 325 Neisseria sp. 10023 species 1853278 2 955 0 no rank 2623750 species 1853276 492 1 0 Neisseria sp. 10022 species 655307 0 463 1 Neisseria sp. KEM232 Neisseria meningitidis 0 1 1153 487 species 28091 species Neisseria weaveri 248 1 0 genus 538 0 532 2 3 Eikenella 1 Eikenella corrodens 0 1 529 539 species 0 1 1023 no rank 421605 0 1023 1 Neisseriaceae bacterium DSM 100970 species 2052837 71 genus 0 508 1 72 species Simonsiella muelleri 0 508 1 1 6 Vitreoscilla 702 3 0 59 genus 63 species Vitreoscilla filiformis 0 1 330 2627922 no rank 0 1 366 1 366 0 Vitreoscilla sp. C1 species 96942 genus 1193515 0 352 1 1196083 species Snodgrassella alvi 1 352 0 Chromobacteriaceae 47 1 0 13 6386 1499392 family 168470 genus 14 Laribacter 1 0 2 705 Laribacter hongkongensis 691 1 0 168471 species genus 187 626 2 0 1 2 Aquaspirillum no rank 2620219 0 1 624 0 624 1 Aquaspirillum sp. LM1 species 1938604 90153 no rank 0 3344 4 Chromobacterium 43 1 0 4 3344 535 genus 536 species Chromobacterium violaceum 0 993 1 1 1460 0 Chromobacterium vaccinii species 1108595 848 1 0 2641838 no rank 848 1 0 Chromobacterium sp. ATCC 53434 species 2059672 genus 885864 0 455 2 Jeongeupia 6 1 no rank 2619593 1 449 0 449 1 0 Jeongeupia sp. USM3 species 1906741 568394 genus 1 Pseudogulbenkiania 5 1209 2 0 0 1 1204 2642558 no rank 1 1204 0 Pseudogulbenkiania sp. NH8B species 748280 2 584 0 no rank 33809 beta proteobacterium CB 0 117 1 543913 species species 1904640 467 1 0 Betaproteobacteria bacterium GR16-43 1 Nitrosomonadales 55 41 8677 0 32003 order 12 Gallionellaceae 1 0 918 4 90627 family 2 418 0 1 3 Sideroxydans genus 314343 1 415 0 Sideroxydans lithotrophicus species 63745 0 1 488 96 genus 370405 species Gallionella capsiferriformans 1 488 0 4 Thiobacillaceae 1 0 3 290 2008790 family Thiobacillus 6 1 0 2 286 919 genus species 36861 1 280 0 Thiobacillus denitrificans 2008793 family 1 Sterolibacteriaceae 9 1082 5 0 1054211 genus 4 Sulfuritalea 1 0 2 624 species 748811 0 620 1 Sulfuritalea hydrogenivorans 7 Methyloversatilis 1 0 2 449 378210 genus 442 1 0 2639971 no rank Methyloversatilis sp. RAC08 1 442 0 1842540 species 0 4 467 2772226 family genus 935200 191 2 0 1 Sulfuricella 1 649841 species Sulfuricella denitrificans 190 1 0 1778653 genus Sulfuriferula 4 1 0 276 2 2637784 no rank 0 1 272 1 272 0 Sulfuriferula sp. AH1 species 1985873 0 3603 13 1 Methylophilaceae 1 family 32011 genus 1679002 739 2 0 473 1 0 Candidatus Methylopumilus planktonicus species 1581557 Candidatus Methylopumilus turicensis 0 266 1 1581680 species 2 230 0 1 Methylophilus 1 genus 16 2630143 no rank 1 229 0 Methylophilus sp. TWE2 0 1 229 1662285 species 1 Methylobacillus 2 225 2 0 404 genus 405 species Methylobacillus flagellatus 223 1 0 Methylotenera 1 1 0 3 706 359407 genus species 1055487 0 444 1 Methylotenera versatilis 261 1 0 Methylotenera mobilis species 359408 genus 81682 0 1702 3 Methylovorus 24 1 no rank 2634027 0 980 1 species 887061 980 1 0 Methylovorus sp. MP688 Methylovorus glucosotrophus 698 1 0 266009 species family 206379 2262 11 0 1 Nitrosomonadaceae 7 2 Nitrosospira 1 0 4 526 35798 genus 1288494 species Nitrosospira lacus 0 206 1 species 1231 138 1 0 Nitrosospira multiformis Nitrosospira briensis 0 180 1 35799 species 6 1729 0 914 genus 916 species Nitrosomonas eutropha 0 295 1 species 44577 0 365 1 Nitrosomonas ureae Nitrosomonas communis 0 243 1 44574 species species 915 1 289 0 Nitrosomonas europaea 2609265 no rank 537 2 0 153948 species Nitrosomonas sp. AL212 0 277 1 260 1 0 Nitrosomonas sp. Is79A3 species 261292 order 206389 0 22 7450 Rhodocyclales 116 1 family 2008795 0 3 602 7 Azonexaceae 1 genus 73029 0 2 595 Dechloromonas 8 1 259537 species Dechloromonas aromatica 0 587 1 1 37 Rhodocyclaceae 2154 6 0 75787 family no rank 75788 1 416 0 species 1898103 416 1 0 Rhodocyclaceae bacterium genus 551759 2 846 0 1 Aromatoleum 5 551760 species Aromatoleum aromaticum 0 1 841 146937 genus Azospira 24 1 0 2 855 146939 species Azospira oryzae 1 831 0 0 4578 12 88 Zoogloeaceae 1 family 2008794 78 Azoarcus 1 0 1846 5 12960 genus 0 921 2 2629479 no rank species 198107 1 438 0 Azoarcus sp. CIB 748247 species Azoarcus sp. KH32C 483 1 0 418699 species Azoarcus olearius 0 1 431 2067960 species Azoarcus sp. SY39 416 1 0 33057 genus 1 48 Thauera 6 2644 0 Thauera chlorobenzoica 512 1 0 96773 species 0 2 1028 no rank 2609274 85643 species Thauera sp. MZ1T 444 1 0 species 2005884 584 1 0 Thauera sp. K11 Thauera aromatica 528 1 0 59405 species species 1134435 0 528 1 Thauera humireducens 12 1848 0 no rank 119066 1 Kinetoplastibacterium 2 6 1168 0 33055 genus species 994696 242 1 0 Candidatus Kinetoplastibacterium oncopeltii 233181 species Kinetoplastibacterium blastocrithidii 1 280 0 1 163 0 Candidatus Kinetoplastibacterium crithidii species 33056 Candidatus Kinetoplastibacterium desouzaii 241 1 0 994692 species Candidatus Kinetoplastibacterium galatii 1 240 0 994695 species genus 189384 0 17 2 1 Candidatus Tremblaya 1 Candidatus Tremblaya princeps 0 1 16 189385 species 1 Candidatus Accumulibacter 15 2 549 0 327159 genus species 327160 534 1 0 Candidatus Accumulibacter phosphatis 0 1 8 1301080 genus 1160784 species Candidatus Nasuia deltocephalinicola 1 8 0 106 1 0 1381133 genus 0 106 1 Candidatus Profftella armatura species 669502 1236 class 1 688 Gammaproteobacteria 429145 863 0 72273 order Thiotrichales 2 1 0 33 15095 12 2923 0 1 Piscirickettsiaceae 10 family 135616 0 224 1 28884 genus 1 224 0 Hydrogenovibrio crunogenus species 39765 3 383 0 1 Thiomicrospira 2 genus 933 Thiomicrospira cyclica 156 1 0 147268 species 92245 species Thiomicrospira aerophila 225 1 0 34067 genus 1 Cycloclasticus 14 4 1082 0 0 387 1 Cycloclasticus zancles species 1329899 2 681 0 no rank 2621467 species 385025 0 1 379 Cycloclasticus sp. P1 Cycloclasticus sp. PY97N 1 302 0 728003 species 0 1 700 genus 1237 700 1 0 Piscirickettsia salmonis species 1238 genus 40222 524 2 0 species 754476 1 232 0 Methylophaga nitratireducenticrescens species 754477 0 292 1 Methylophaga frappieri 17 Francisellaceae 1 0 11311 15 34064 family 1869285 genus 1 5 Allofrancisella 532 2 0 species 594679 1 527 0 Allofrancisella guangzhouensis 262 genus Francisella 19 1 0 12 10762 657445 species Francisella noatunensis 0 1085 1 species 573570 1 967 0 Francisella sp. TX077310 2 1243 0 2610885 no rank 1547445 species Francisella sp. FSC1006 0 1123 1 species 475375 120 1 0 Francisella sp. MA067296 954 species Francisella persica 0 1 379 species 549298 0 939 1 Francisella halioticida species 28110 0 1 2499 Francisella philomiragia 658 1 0 Francisella sp. CA97-1460 species 1542390 species 622488 0 1 599 Francisella hispaniensis 0 802 1 Francisella sp. TX077308 species 573569 0 1572 1 Francisella tularensis species 263 135617 family 1 Thiotrichaceae 6 5 859 0 2 Thioploca 1 0 2 197 40751 genus Thioploca ingrica 195 1 0 40754 species 1021 genus Beggiatoa 1 1 0 656 2 Beggiatoa leptomitoformis 1 655 0 288004 species 72274 order Pseudomonadales 462 1 0 129 89623 Pseudomonadaceae 319 1 0 63649 86 135621 family genus 1849530 0 2 244 1 Oblitimonas 1 species 1697053 0 1 243 Oblitimonas alkaliphila 0 3 1374 subfamily 351 15 Azotobacter 1 0 3 1374 352 genus 354 species Azotobacter vinelandii 0 542 1 353 species Azotobacter chroococcum 0 1 817 61712 80 0 1 Pseudomonas 1978 genus 286 0 1 388 Pseudomonas rhizosphaerae species 216142 1 303 0 Pseudomonas cremoricolorata species 157783 0 1 562 Pseudomonas parafulva species 157782 species 312306 1 240 0 Pseudomonas entomophila 2 3449 0 species group 136846 578833 species subgroup 0 1 3149 316 species Pseudomonas stutzeri 0 1 3149 Pseudomonas balearica 1 300 0 74829 species species group 136849 0 8 5828 46257 species Pseudomonas avellanae 0 305 1 251701 species Pseudomonas syringae group genomosp. 3 536 1 0 no rank 2775504 1 392 0 species 1206777 0 392 1 Pseudomonas sp. Lz4W 0 1 223 Pseudomonas cichorii species 36746 0 1 827 Pseudomonas viridiflava species 33069 2 822 0 species subgroup 251698 29438 species Pseudomonas savastanoi 403 1 0 1 419 0 Pseudomonas amygdali species 47877 0 2723 1 251695 species subgroup species 317 0 2723 1 Pseudomonas syringae 198620 species Pseudomonas koreensis 0 622 1 species 1788301 202 1 0 Pseudomonas versuta 0 9827 6 136845 species group Pseudomonas putida 0 5443 1 303 species 47880 species Pseudomonas fulva 1629 1 0 0 1 470 Pseudomonas oryzihabitans species 47885 species 70775 308 1 0 Pseudomonas plecoglossicida species 78327 1 754 0 Pseudomonas mosselii species 76759 0 1 1223 Pseudomonas monteilii species 244566 0 513 1 Pseudomonas lurida 104087 species Pseudomonas frederiksbergensis 921 1 0 species group 136843 0 8714 9 Pseudomonas orientalis 0 241 1 76758 species Pseudomonas poae 254 1 0 200451 species 47879 species Pseudomonas corrugata 1 383 0 species 76761 0 308 1 Pseudomonas veronii species 200450 477 1 0 Pseudomonas trivialis species 294 5243 1 0 Pseudomonas fluorescens 47878 species Pseudomonas azotoformans 1 728 0 380021 species Pseudomonas protegens 0 1 623 species 75612 0 1 457 Pseudomonas mandelii species group 136842 0 2 2917 Pseudomonas chlororaphis 0 1 2149 587753 species Pseudomonas fragi 1 768 0 296 species species 1853130 0 395 1 Pseudomonas silesiensis Pseudomonas cerasi 0 544 1 1583341 species 101564 species Pseudomonas alcaliphila 0 568 1 species 237609 0 1 482 Pseudomonas alkylphenolica 7053 6 0 species group 136841 species subgroup 1232139 587 1 0 1149133 species Pseudomonas furukawaii 1 587 0 287 species Pseudomonas aeruginosa 2665 1 0 536 1 0 Pseudomonas alcaligenes species 43263 300 species Pseudomonas mendocina 1685 1 0 species 53408 1 1011 0 Pseudomonas citronellolis Pseudomonas resinovorans 0 1 569 53412 species Pseudomonas antarctica 0 1 940 219572 species 65741 species Pseudomonas knackmussii 1 521 0 species 930166 0 1 838 Pseudomonas brassicacearum 30 13078 0 no rank 196821 Pseudomonas sp. M30-35 593 1 0 1981174 species 0 1 472 Pseudomonas sp. HLS-6 species 2049589 species 1636610 0 1 304 Pseudomonas sp. PONIH3 247 1 0 Pseudomonas sp. UW4 species 1207075 1028989 species Pseudomonas sp. StFLB209 0 1 465 338 1 0 Pseudomonas sp. FGI182 species 1259844 1283291 species Pseudomonas sp. URMO17WK12:I11 0 1 1243 786 1 0 Pseudomonas sp. CC6-YY-74 species 1930532 species 1338689 1 389 0 Pseudomonas sp. JY-Q species 1856685 1 603 0 Pseudomonas sp. TCU-HL1 species 1931241 0 1 271 Pseudomonas sp. S-6-2 species 1898684 404 1 0 Pseudomonas sp. LPH1 Pseudomonas sp. TKP 0 325 1 1415630 species 0 266 1 Pseudomonas sp. FDAARGOS_380 species 2018067 2067572 species Pseudomonas sp. NC02 0 292 1 0 277 1 Pseudomonas sp. SWI36 species 2083052 2083054 species Pseudomonas sp. LG1D9 412 1 0 1500687 species Pseudomonas sp. St29 0 519 1 0 1 505 Pseudomonas sp. Os17 species 1500686 Pseudomonas sp. SWI6 0 269 1 2083051 species species 1534110 0 1 390 Pseudomonas sp. DR 5-09 Pseudomonas sp. MYb193 0 236 1 1827300 species 1649877 species Pseudomonas sp. CCOS 191 0 330 1 0 1 633 Pseudomonas sp. LH1G9 species 2083055 Pseudomonas sp. SWI44 1 230 0 2083053 species species 1611770 499 1 0 Pseudomonas sp. MRSN12121 2069256 species Pseudomonas sp. XWY-1 0 1 335 Pseudomonas sp. ATCC 13867 0 1 595 1294143 species 69328 species Pseudomonas sp. VLB120 1 418 0 1659194 species Pseudomonas sp. GR 6-02 432 1 0 237610 species Pseudomonas psychrotolerans 829 1 0 25512 42 0 1 Moraxellaceae 17 family 468 Psychrobacter 12 1 0 11 3321 497 genus 334543 species Psychrobacter arcticus 1 346 0 0 1 420 Psychrobacter urativorans species 45610 species 261164 0 338 1 Psychrobacter alimentarius 2106 6 0 196806 no rank 1699622 species Psychrobacter sp. P2G3 0 155 1 Psychrobacter sp. DAB_AL43B 1 454 0 1028416 species 349106 species Psychrobacter sp. PRwf-1 1 822 0 1699624 species Psychrobacter sp. P11G5 116 1 0 Psychrobacter sp. G 0 122 1 571800 species Psychrobacter sp. AntiMn-1 0 1 437 1720344 species Psychrobacter cryohalolentis 0 1 99 330922 species 475 genus Moraxella 27 1 0 5 1594 species 34062 0 441 1 Moraxella osloensis species 29433 1 138 0 Moraxella ovis 480 species Moraxella catarrhalis 0 1 506 species 386891 0 1 482 Moraxella bovoculi 469 genus 1 Acinetobacter 80 25 20580 0 29430 species Acinetobacter haemolyticus 0 997 1 Acinetobacter indicus 0 1 422 756892 species 0 1 640 Acinetobacter radioresistens species 40216 0 3927 7 no rank 196816 Acinetobacter sp. SWBY1 489 1 0 2079596 species species 1646498 1 684 0 Acinetobacter sp. TTH0-4 species 1407071 0 425 1 Acinetobacter sp. TGL-Y2 1608473 species Acinetobacter sp. NCu2D-2 0 588 1 Acinetobacter sp. ACNIH1 1 361 0 1636603 species Acinetobacter sp. LoGeW2-3 662 1 0 1808001 species 718 1 0 Acinetobacter sp. ACNIH2 species 1758189 0 840 1 Acinetobacter bereziniae species 106648 202950 species 0 526 1 62977 strain Acinetobacter sp. ADP1 0 1 526 species 40214 0 467 1 Acinetobacter johnsonii species group 909768 0 7839 5 1832 1 0 Acinetobacter pittii species 48296 Acinetobacter nosocomialis 0 745 1 106654 species 0 2892 1 Acinetobacter baumannii species 470 471 species Acinetobacter calcoaceticus 0 1 1720 0 1 650 Acinetobacter lactucae species 1785128 Acinetobacter junii 721 1 0 40215 species 1324350 species Acinetobacter equi 0 1 1815 species 487316 408 1 0 Acinetobacter soli species 1789224 0 1 473 Acinetobacter larvae Acinetobacter schindleri 1 482 0 108981 species 1148157 species Acinetobacter oleivorans 943 1 0 0 3501 12 118884 no rank 3 481 0 1 Candidatus Thioglobus 6 genus 655184 species 1427364 0 367 1 Candidatus Thioglobus singularis Candidatus Thioglobus autotrophicus 1 108 0 1705394 species 349742 genus 587 1 0 0 1 587 Sedimenticola thiotaurini species 1543721 Thiolapillus 2 1 0 2 501 1608298 genus Thiolapillus brandeum 1 499 0 1076588 species 0 787 4 32036 clade 1 Candidatus Ruthia 1 2 163 0 1541743 genus 386487 species Candidatus Ruthia magnifica 0 162 1 113267 species Bathymodiolus septemdierum thioautotrophic gill symbiont 0 181 1 0 443 1 Calyptogena okutanii thioautotrophic gill symbiont species 410330 198346 clade 1 646 0 1 646 0 Candidatus Baumannia cicadellinicola species 186490 0 1 499 1524249 genus species 1249552 1 499 0 Pseudohongiella spirulinae Cellvibrionales 14 1 0 6720 28 1706369 order family 1706372 1046 4 0 1 2 Halieaceae 3 1044 0 1 8 Halioglobus genus 1217416 species 930806 467 1 0 Halioglobus pacificus species 930805 0 1 569 Halioglobus japonicus 1 Cellvibrionaceae 15 3241 11 0 1706371 family 2425 genus 1 1 Teredinibacter 220 2 0 Teredinibacter turnerae 0 1 219 2426 species 0 439 1 316625 genus Saccharophagus degradans 0 1 439 86304 species genus 2036021 0 878 1 species 1737490 0 1 878 Agarilytica rhodophyticola 10 genus 1 Cellvibrio 4 4 1362 0 0 716 2 no rank 2624793 512 1 0 Cellvibrio sp. PSBB023 species 1945512 1987723 species Cellvibrio sp. PSBB006 0 204 1 Cellvibrio japonicus 1 642 0 155077 species 1 Simiduia 6 2 327 0 447467 genus species 447471 0 1 321 Simiduia agarivorans 1706373 family 1 3 Microbulbiferaceae 5 1250 0 genus 48073 1247 4 0 1 6 Microbulbifer 252514 species Microbulbifer thermotolerans 402 1 0 1769779 species Microbulbifer aggregans 0 333 1 506 1 0 Microbulbifer agarilyticus species 260552 1706375 family 2 Spongiibacteraceae 1 0 7 1169 Zhongshania 3 1 0 233 2 1434050 genus Zhongshania aliphaticivorans 0 230 1 1470434 species 769 2 0 1 Oceanicoccus 1 genus 1084558 716816 species Oceanicoccus sagamiensis 1 768 0 165 2 0 1 Spongiibacter 1 genus 630749 no rank 2631504 0 1 164 1620392 species Spongiibacter sp. IMCC21906 0 164 1 0 132115 242 523 Enterobacterales 1 order 91347 0 2 671 no rank 451511 702 genus 1 Plesiomonas 5 2 671 0 species 703 0 1 666 Plesiomonas shigelloides family 1903410 0 9378 20 18 Pectobacteriaceae 1 0 500 2 9 Brenneria 1 genus 71655 1109412 species Brenneria goodwinii 0 1 491 genus 204037 0 3819 6 Dickeya 112 1 species 204042 0 1 1351 Dickeya zeae Dickeya solani 788 1 0 1089444 species 0 401 1 Dickeya dadantii species 204038 1778540 species Dickeya fangzhongdai 0 1 623 species 204039 1 544 0 Dickeya dianthicola 117 Pectobacterium 1 0 4155 6 122277 genus Pectobacterium parmentieri 500 1 0 1905730 species Pectobacterium wasabiae 1 387 0 55208 species species 29471 0 332 1 Pectobacterium atrosepticum species 2042057 0 1 1141 Pectobacterium polaris 554 species Pectobacterium carotovorum 1678 1 0 84565 genus 1 Sodalis 11 886 5 0 species 1239307 318 1 0 Sodalis praecaptivus species 63612 0 1 229 Sodalis glossinidius 1486991 species Candidatus Sodalis pierantonius 0 213 1 1929246 species Sodalis endosymbiont of Henestaris halophilus 115 1 0 family 1903411 0 22194 39 44 Yersiniaceae 1 genus 929812 2 663 0 1 Gibbsiella 1 0 1 662 Gibbsiella quercinecans species 929813 genus 34037 0 4 1287 21 Rahnella 1 878 2 0 2635087 no rank species 1805933 1 491 0 Rouxiella sp. ERMR1:05 Rahnella sp. Y9602 0 1 387 741091 species Rahnella aquatilis 0 388 1 34038 species genus 1745211 331 2 0 1 2 Chania species 1639108 329 1 0 Chania multitudinisentens genus 1565532 1 1 0 Rouxiella genus 613 11730 16 0 1 Serratia 586 0 446 1 Serratia rubidaea species 61652 Serratia proteamaculans 0 1 675 28151 species species 82996 1 1211 0 Serratia plymuthica 0 3629 8 2647522 no rank 0 504 1 Serratia sp. ATCC 39006 species 104623 488142 species Serratia sp. SCBI 1 448 0 0 1 395 Serratia sp. AS12 species 768490 Serratia sp. FS14 0 499 1 1327989 species Serratia sp. AS13 394 1 0 768493 species 671990 species Serratia sp. FGI94 1 548 0 0 1 519 Serratia sp. MYb239 species 2033438 species 1758196 0 322 1 Serratia sp. SSNIH1 species 47917 0 1 1155 Serratia fonticola 630 1 0 Serratia ficaria species 61651 1 708 0 Serratia liquefaciens species 614 Serratia marcescens 0 1 2690 615 species 120 Yersinia 1 0 13 8138 629 genus Yersinia aleksiciae 0 1 491 263819 species 29484 species Yersinia frederiksenii 1 2005 0 0 1 692 Yersinia kristensenii species 28152 631 species Yersinia intermedia 0 1 265 2653513 no rank 0 259 1 Yersinia sp. FDAARGOS_228 1 259 0 1839800 species 29485 species Yersinia rohdei 1 613 0 1812 1 0 Yersinia enterocolitica species 630 species 29486 0 1 663 Yersinia ruckeri species 29483 0 1 273 Yersinia aldovae 3 945 0 1649845 species group 0 1 280 Yersinia pestis species 632 0 1 357 Yersinia similis species 367190 633 species Yersinia pseudotuberculosis 0 1 308 family 1903414 0 21 11137 23 Morganellaceae 1 genus 637 0 208 1 species 634113 0 1 208 Arsenophonus symbiont of Lipoptena fortisetosa genus 586 4 3181 0 1 Providencia 8 0 1 1424 Providencia rettgeri species 587 Providencia alcalifaciens 0 599 1 126385 species Providencia stuartii 0 1 1150 588 species 1 24 Proteus 2295 3 0 583 genus 584 species Proteus mirabilis 1471 1 0 585 species Proteus vulgaris 1 800 0 581 genus Morganella 17 1 0 2 1118 species 582 1 1101 0 Morganella morganii 0 2104 6 Xenorhabdus 6 1 genus 626 species 351671 1 342 0 Xenorhabdus doucetiae species 40577 175 1 0 Xenorhabdus poinarii Xenorhabdus bovienii 0 386 1 40576 species 0 500 1 Xenorhabdus hominickii species 351679 species 628 1 695 0 Xenorhabdus nematophila 29487 genus 29 Photorhabdus 1 0 4 2208 445 1 0 Photorhabdus luminescens species 29488 species 574560 0 1 728 Photorhabdus temperata Photorhabdus asymbiotica 1 1006 0 291112 species family 1903412 5142 14 0 1 16 Hafniaceae 635 genus 288 Edwardsiella 1 0 3559 8 636 species Edwardsiella tarda 898 1 0 1821960 species Edwardsiella anguillarum 1 321 0 0 2 767 2676541 no rank 0 1 451 Edwardsiella sp. EA181011 species 1578828 1650654 species Edwardsiella sp. LADL05-105 0 1 316 Edwardsiella piscicida 1 434 0 1263550 species 1 273 0 Edwardsiella ictaluri species 67780 species 93378 1 578 0 Edwardsiella hoshinae 82982 genus 8 Obesumbacterium 1 0 254 2 82983 species Obesumbacterium proteus 0 246 1 0 3 1313 Hafnia 8 1 genus 568 2621980 no rank 403 1 0 Hafnia sp. CBA7124 403 1 0 1848580 species 1 902 0 Hafnia alvei species 569 family 543 0 116 68954 Enterobacteriaceae 731 1 158483 genus Cedecea 7 1 0 1836 2 158822 species Cedecea neteri 1829 1 0 genus 547 13290 22 0 1 Enterobacter 732 2608935 no rank 0 3262 9 347 1 0 Enterobacter sp. CRENT-193 species 2051905 0 635 1 Enterobacter sp. ODB01 species 1827481 species 399742 351 1 0 Enterobacter sp. 638 Enterobacter sp. Crenshaw 390 1 0 1977566 species species 1692238 0 323 1 Enterobacter sp. FY-07 Enterobacter sp. SA187 1 548 0 1914861 species 0 113 1 Enterobacter sp. E20 species 1560339 421 1 0 Enterobacter sp. R4-368 species 1166130 1868135 species Enterobacter sp. HK169 0 134 1 0 9296 12 species group 354276 no rank 2757714 1351 3 0 species 2027919 397 1 0 Enterobacter cloacae complex bacterium 313 1 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 2077137 Enterobacter cloacae complex sp. ECNIH7 0 641 1 1915310 species species 1812935 0 191 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1112 1 0 Enterobacter asburiae species 61645 1 Enterobacter hormaechei 1315 3 2126 0 158836 species subspecies 1296536 0 1 242 Enterobacter xiangfangensis 1812934 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 0 569 1 0 190 1 Enterobacter kobei species 208224 550 species Enterobacter cloacae 3619 1 0 species 69218 1 381 0 Enterobacter cancerogenus 299767 species Enterobacter ludwigii 1 326 0 413496 genus Cronobacter 42 1 0 8 3239 711 1 0 Cronobacter sakazakii species 28141 0 1 441 Cronobacter dublinensis species 413497 535744 species Cronobacter universalis 1 304 0 Cronobacter condimenti 600 1 0 1163710 species 413503 species Cronobacter malonaticus 282 1 0 Cronobacter muytjensii 468 1 0 413501 species 0 391 1 Cronobacter turicensis species 413502 579 genus Kluyvera 1 1 0 368 2 61648 species Kluyvera intermedia 0 1 367 401618 genus 147 1 0 0 147 1 Candidatus Riesia pediculicola species 401619 0 1722 4 Lelliottia 10 1 genus 1330545 Lelliottia nimipressuralis 0 484 1 69220 species species 1907578 1 326 0 Lelliottia jeotgali 0 902 1 Lelliottia amnigena species 61646 Shigella 249 1 0 4 1054 620 genus species 623 0 1 192 Shigella flexneri Shigella dysenteriae 0 382 1 622 species no rank 2629414 0 231 1 1813821 species Shigella sp. PAMC 28760 0 1 231 1 Kosakonia 8 5 2104 0 1330547 genus 283686 species Kosakonia radicincitans 0 1 408 Kosakonia cowanii 0 836 1 208223 species species 497725 0 1 414 Kosakonia oryzae Kosakonia sacchari 438 1 0 1158459 species 1335483 genus 0 299 1 563 species Shimwellia blattae 1 299 0 genus 561 0 5 8296 253 Escherichia 1 species 1499973 379 1 0 Escherichia marmotae species 564 0 1 528 Escherichia fergusonii Escherichia coli 0 1 5485 562 species Escherichia albertii 0 1651 1 208962 species Klebsiella 231 1 0 12646 10 570 genus 1134687 species Klebsiella michiganensis 1056 1 0 species 548 1738 1 0 Klebsiella aerogenes Klebsiella oxytoca 0 1 1708 571 species 884 1 0 Klebsiella quasivariicola species 2026240 3568 1 0 Klebsiella pneumoniae species 573 species 1463165 0 945 1 Klebsiella quasipneumoniae 0 2 1059 no rank 2608929 1 584 0 Klebsiella sp. M5al species 1934254 species 1905288 1 475 0 Klebsiella sp. LTGPAF-6F Klebsiella variicola 0 1 1457 244366 species 1 36 Leclercia 4 1653 0 83654 genus species 83655 1 555 0 Leclercia adecarboxylata 1062 2 0 2627398 no rank 1920114 species Leclercia sp. LSNIH1 0 1 606 Leclercia sp. LSNIH3 456 1 0 1920116 species Salmonella 6 1 0 3 3652 590 genus Salmonella bongori 0 651 1 54736 species 0 2995 1 Salmonella enterica species 28901 0 95 1 genus 1048757 1048758 species Candidatus Moranella endobia 0 95 1 1 Raoultella 29 1972 3 0 160674 genus 1 1359 0 Raoultella ornithinolytica species 54291 Raoultella planticola 0 584 1 575 species no rank 36866 0 2673 5 species 1920128 0 1 700 Enterobacteriaceae bacterium ENNIH3 Enterobacteriaceae bacterium ENNIH2 0 438 1 1920109 species 891974 species Plautia stali symbiont 0 1 663 species 2066051 245 1 0 Enterobacteriaceae bacterium ENNIH1 species 693444 0 1 627 Enterobacteriaceae bacterium strain FGI 57 409304 genus 167 1 0 168169 species Candidatus Ishikawaella capsulata 0 1 167 544 genus 162 Citrobacter 1 0 14 8196 1126 1 0 Citrobacter amalonaticus species 35703 4481 7 0 1344959 species group 0 1 372 Citrobacter freundii complex sp. CFNIH2 species 2066049 431 1 0 Citrobacter freundii complex sp. CFNIH3 species 2077147 0 1 1749 Citrobacter freundii species 546 species 67827 0 1 752 Citrobacter werkmanii Citrobacter braakii 487 1 0 57706 species 1 306 0 Citrobacter freundii complex sp. CFNIH9 species 2077149 2077148 species Citrobacter freundii complex sp. CFNIH4 384 1 0 no rank 2644389 0 1065 2 species 1702170 0 1 653 Citrobacter sp. FDAARGOS_156 Citrobacter sp. CFNIH10 0 1 412 1920110 species Citrobacter rodentium 1 522 0 67825 species 0 383 1 Citrobacter farmeri species 67824 545 species Citrobacter koseri 0 457 1 191675 no rank 17 3192 0 3192 17 0 clade 84563 198 1 0 1906660 genus Candidatus Mikella endobia 198 1 0 1778264 species 175 1 0 199891 clade 175 1 0 secondary endosymbiont of Trabutina mannipara species 1835721 1906657 genus Candidatus Doolittlea 1 1 0 316 2 Candidatus Doolittlea endobia 0 315 1 1778262 species genus 1682492 583 1 0 0 1 583 Candidatus Tachikawaea gelatinosa species 1410383 1906661 genus 1 233 0 1070130 species Candidatus Gullanella endobia 0 233 1 0 1 41 1906659 genus 1778263 species Candidatus Hoaglandella endobia 0 1 41 clade 84564 0 7 1024 0 7 1024 Candidatus Blochmannia 1 1 genus 203804 Candidatus Blochmannia chromaiodes 0 93 1 251542 species no rank 711328 508 2 0 158 1 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1 350 1505597 species Candidatus Blochmannia floridanus 0 1 204 203907 species species 251535 0 120 1 Candidatus Blochmannia vafer species 101534 98 1 0 Candidatus Blochmannia pennsylvanicus 0 622 3 clade 146507 genus 568987 377 1 0 138072 species Candidatus Hamiltonella defensa 1 377 0 secondary endosymbiont of Ctenarytaina eucalypti 1 212 0 1199245 species species 134287 33 1 0 secondary endosymbiont of Heteropsylla cubana 1330546 genus 1 Pluralibacter 4 1622 3 0 [Enterobacter] lignolyticus 825 1 0 1334193 species 61647 species Pluralibacter gergoviae 1 793 0 1903416 family 0 726 2 2 726 0 1 3 Pragia genus 82984 723 1 0 Pragia fontium species 82985 27 13390 0 1 Erwiniaceae 20 family 1903409 genus 551 3326 8 0 1 Erwinia 70 552 species Erwinia amylovora 0 508 1 species 1922217 276 1 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 1619313 species Erwinia gerundensis 0 530 1 0 399 1 Erwinia tasmaniensis species 338565 79967 species Erwinia pyrifoliae 1 484 0 Erwinia billingiae 0 1 646 182337 species 2622719 no rank 413 1 0 Erwinia sp. Ejp617 1 413 0 215689 species 0 6131 11 Pantoea 473 1 genus 53335 species 1891675 0 309 1 Pantoea alhagi species 553 0 932 1 Pantoea ananatis 0 371 1 Candidatus Pantoea carbekii species 1235990 Pantoea rwandensis 0 1 225 1076550 species species 66269 0 486 1 Pantoea stewartii 1654067 species group 0 928 1 Pantoea agglomerans 928 1 0 549 species 470934 species Pantoea vagans 0 991 1 0 3 1416 no rank 2630326 0 596 1 Pantoea sp. PSNIH2 species 1484157 1484158 species Pantoea sp. PSNIH1 1 320 0 species 592316 0 1 500 Pantoea sp. At-9b 2121 1 0 32199 genus 9 species Buchnera aphidicola 1 2121 0 927 2 0 2100764 genus Pantoea calida 1 580 0 665913 species 0 1 347 Pantoea gaviniae species 665914 1 33 Tatumella 464 2 0 82986 genus 1 431 0 Tatumella citrea species 53336 51228 genus Wigglesworthia 4 1 0 2 401 1 397 0 Wigglesworthia glossinidia species 51229 Xanthomonadales 209 1 0 27047 52 135614 order family 32033 21511 37 0 1 183 Xanthomonadaceae genus 338 9285 17 0 1 599 Xanthomonas species 456327 1 268 0 Xanthomonas euvesicatoria Xanthomonas sacchari 0 513 1 56458 species species 347 0 774 1 Xanthomonas oryzae 1 305 0 Xanthomonas axonopodis species 53413 Xanthomonas hortorum 420 1 0 56454 species species 442694 0 589 1 Xanthomonas perforans 1 1203 0 Xanthomonas campestris species 339 species 343 0 1 1070 Xanthomonas translucens Xanthomonas phaseoli 1 419 0 1985254 species 0 2 1810 species group 643453 366648 species Xanthomonas fuscans 0 1 361 346 species Xanthomonas citri 1 1449 0 species 56459 0 1 166 Xanthomonas vasicola 200 1 0 Xanthomonas alfalfae species 366650 29447 species Xanthomonas albilineans 1 323 0 Xanthomonas vesicatoria 0 1 435 56460 species species 48664 0 1 191 Xanthomonas fragariae 0 1495 3 15 Pseudoxanthomonas 1 genus 83618 species 415229 0 1 392 Pseudoxanthomonas spadix 1088 1 0 Pseudoxanthomonas suwonensis species 314722 68 genus 1 51 Lysobacter 2472 5 0 1 703 0 Lysobacter enzymogenes species 69 262324 species Lysobacter gummosus 0 620 1 84531 species Lysobacter antibioticus 0 1 575 Lysobacter capsici 0 523 1 435897 species genus 40323 0 9 7096 Stenotrophomonas 161 1 species 216778 408 1 0 Stenotrophomonas rhizophila 128780 species Stenotrophomonas acidaminiphila 894 1 0 species 83617 425 1 0 Stenotrophomonas nitritireducens 1 3265 0 995085 species group Stenotrophomonas maltophilia 3265 1 0 40324 species 196198 no rank 0 1943 4 1904944 species Stenotrophomonas sp. LM091 0 471 1 Stenotrophomonas sp. WZN-1 0 440 1 2005046 species species 1827305 1 650 0 Stenotrophomonas sp. MYb57 Stenotrophomonas sp. KCTC 12332 382 1 0 1793721 species 2370 genus 551 1 0 551 1 0 Xylella fastidiosa species 2371 genus 83614 429 1 0 1 429 0 Luteimonas sp. 100111 species 2006110 14 5327 0 1 99 Rhodanobacteraceae family 1775411 genus 2233801 1 268 0 0 268 1 Xanthomonadales bacterium D13 species 2021234 1 4 Frateuria 2 553 0 70411 genus Frateuria aurantia 1 549 0 81475 species 1 Dokdonella 5 650 2 0 323413 genus 645 1 0 Dokdonella koreensis species 323415 1 24 Luteibacter 2 726 0 242605 genus 0 702 1 Luteibacter rhizovicinus species 242606 231454 genus 1 Dyella 55 2167 4 0 1 699 0 Dyella jiangningensis species 1379159 231455 species Dyella japonica 714 1 0 species 445710 1 699 0 Dyella thiooxydans 75309 genus 1 6 Rhodanobacter 2 864 0 species 666685 858 1 0 Rhodanobacter denitrificans 0 2406 13 Methylococcales 10 1 order 135618 2396 12 0 1 Methylococcaceae 28 family 403 genus 39773 0 368 2 2 Methylomicrobium 1 species 271065 366 1 0 Methylomicrobium alcaliphilum 762296 genus 1 Methylovulum 7 205 2 0 Methylovulum psychrotolerans 0 198 1 1704499 species genus 413 2 394 0 1 1 Methylococcus 414 species Methylococcus capsulatus 0 393 1 416 genus 18 Methylomonas 1 0 5 1401 Methylomonas koyamae 412 1 0 702114 species Methylomonas methanica 0 289 1 421 species no rank 2608980 374 1 0 Methylomonas sp. DH-1 0 1 374 1727196 species Methylomonas denitrificans 0 308 1 1538553 species 0 3 1826 1240482 order family 1240483 0 3 1826 Orbaceae 24 1 1 1369 0 1193503 genus 1369 1 0 Gilliamella apicola species 1196095 1 433 0 1335631 genus Frischella perrara 0 433 1 1267021 species no rank 33811 2 788 0 gamma proteobacterium HdN1 1 349 0 83406 species species 1248727 0 1 439 endosymbiont of unidentified scaly snail isolate Monju order 135624 0 29 15248 Aeromonadales 67 1 84642 family 56 Aeromonadaceae 1 0 15181 28 4 Oceanimonas 1 0 630 2 129577 genus 626 1 0 2636315 no rank 1 626 0 Oceanimonas sp. GK1 species 511062 1 Aeromonas 659 18 11297 0 642 genus Aeromonas schubertii 1 472 0 652 species Aeromonas aquatica 510 1 0 558964 species 0 1 512 Aeromonas dhakensis species 196024 2611 1 0 Aeromonas hydrophila species 644 0 474 1 Aeromonas media species 651 Aeromonas salmonicida 878 1 0 645 species 948519 species Aeromonas rivipollensis 0 1 617 648 species Aeromonas caviae 0 1 335 Aeromonas veronii 0 1 1188 654 species 257493 no rank 3041 8 0 Aeromonas sp. ASNIH1 260 1 0 1636606 species Aeromonas sp. ASNIH4 604 1 0 1636609 species 1 229 0 Aeromonas sp. ASNIH2 species 1636607 Aeromonas sp. ASNIH7 309 1 0 1920107 species 2033033 species Aeromonas sp. CU5 1 482 0 Aeromonas sp. ASNIH3 0 263 1 1636608 species Aeromonas sp. ASNIH5 0 358 1 1758179 species 2033032 species Aeromonas sp. CA23 536 1 0 genus 225143 1690 3 0 1 Oceanisphaera 2 species 1416627 0 1 1542 Oceanisphaera profunda 1 146 0 Oceanisphaera sp. AMac2203 species 1903694 773 2 0 1 2 Tolumonas genus 43947 species 43948 0 771 1 Tolumonas auensis 3 Zobellella 1 0 735 2 347533 genus 347534 species Zobellella denitrificans 732 1 0 135623 order 10 Vibrionales 1 0 28232 43 641 family 1 Vibrionaceae 132 42 28222 0 genus 2042066 814 1 0 Paraphotobacterium marinum 814 1 0 1755811 species 1 Photobacterium 8 2593 4 0 657 genus species 74109 0 1007 1 Photobacterium profundum 0 562 1 Photobacterium gaetbulicola species 1295392 species 38293 0 1016 1 Photobacterium damselae 246861 genus 1 2 Grimontia 2 260 0 673 species Grimontia hollisae 0 1 258 511678 genus Aliivibrio 4 1 0 1963 4 Aliivibrio wodanis 1 948 0 80852 species Aliivibrio fischeri 1 565 0 668 species 40269 species Aliivibrio salmonicida 1 446 0 30 22460 0 1 193 Vibrio genus 662 2614977 no rank 0 993 2 0 1 438 Vibrio sp. 2521-89 species 2014742 0 555 1 Vibrio sp. EJY3 species 1116375 species 676 1 783 0 Vibrio fluvialis 301 1 0 1891919 species group species 29498 0 1 301 Vibrio tubiashii Vibrio tritonius 261 1 0 1435069 species 2025808 species Vibrio qinghaiensis 1 393 0 Vibrio breoganii 749 1 0 553239 species 1 880 0 Vibrio anguillarum species 55601 1112 1 0 Vibrio cholerae species 666 Vibrio coralliilyticus 0 1219 1 190893 species species group 717610 9873 10 0 1 1127 0 Vibrio harveyi species 669 190895 species Vibrio rotiferianus 0 496 1 species 696485 0 1 829 Vibrio owensii 670 species Vibrio parahaemolyticus 0 1 1433 663 species Vibrio alginolyticus 0 1 1322 766224 species Vibrio jasicida 0 1 316 1495 2 0 2315253 species subgroup 150340 species Vibrio antiquarius 666 1 0 0 829 1 Vibrio diabolicus species 50719 691 species Vibrio natriegens 1468 1 0 1387 1 0 Vibrio campbellii species 680 45658 species Vibrio scophthalmi 577 1 0 379 1 0 Vibrio tapetis species 52443 0 514 1 Vibrio gazogenes species 687 species 1534743 0 1 228 Vibrio hyugaensis Vibrio tasmaniensis 554 1 0 212663 species 672 species Vibrio vulnificus 0 1689 1 Vibrio furnissii 1 486 0 29494 species 28173 species Vibrio nigripulchritudo 0 1 337 0 1 939 Vibrio mimicus species 674 Immundisolibacterales 11 1 0 546 4 1934945 order 0 3 535 12 Immundisolibacteraceae 1 family 1934946 genus 1934947 523 2 0 1 5 Immundisolibacter 1810504 species Immundisolibacter cernigliae 1 518 0 1 Oceanospirillales 118 18518 64 0 135619 order family 28256 0 29 8603 79 Halomonadaceae 1 genus 204286 1 521 0 28258 species Cobetia marina 0 521 1 0 3 96 114403 no rank 0 34 1 genus 1495768 1495769 species Candidatus Evansia muelleri 1 34 0 3 1 0 genus 114185 114186 species Candidatus Carsonella ruddii 3 1 0 genus 235572 59 1 0 Candidatus Portiera aleyrodidarum 1 59 0 91844 species genus 42054 0 306 2 1 Chromohalobacter 1 Chromohalobacter salexigens 0 305 1 158080 species 2745 genus 86 Halomonas 1 0 5716 15 species 115561 0 541 1 Halomonas hydrothermalis species 1178482 0 1 373 Halomonas huangheensis 1 449 0 Halomonas aestuarii species 1897729 Halomonas beimenensis 0 1 908 475662 species species 213554 0 1 174 Halomonas campaniensis 0 256 1 Halomonas chromatireducens species 507626 2929 8 0 2609666 no rank Halomonas sp. R57-5 0 1 291 1610576 species 1962264 species Halomonas sp. 'Soap Lake #7' 0 391 1 Halomonas sp. 1513 1 534 0 1883416 species species 1971364 1 163 0 Halomonas sp. GT 0 1 326 Halomonas sp. KO116 species 1504981 Halomonas sp. SF2003 0 1 628 2136172 species Halomonas sp. GFAJ-1 0 205 1 1118153 species 1949203 species Halomonas sp. 'Soap Lake #6' 0 1 391 504090 genus 7 Kushneria 1 0 1038 3 0 443 1 Kushneria marisflavi species 157779 species 698828 1 588 0 Kushneria konosiri 404432 genus Salinicola 4 1 0 2 327 1771309 species Salinicola tamaricis 1 323 0 genus 376488 0 2 520 13 Halotalea 1 species 376489 0 507 1 Halotalea alkalilenta 224372 family 10 Alcanivoracaceae 1 0 9 2599 genus 59753 2216 6 0 1 Alcanivorax 25 species 1094342 0 1 366 Alcanivorax xenomutans Alcanivorax dieselolei 423 1 0 285091 species Alcanivorax borkumensis 327 1 0 59754 species species 1306787 1 728 0 Alcanivorax pacificus 1 347 0 no rank 2638842 Alcanivorax sp. NBRC 101098 0 347 1 1113728 species genus 2025617 373 2 0 1 Ketobacter 3 0 1 370 Ketobacter alkanivorans species 1917421 191033 family 0 399 1 1 399 0 141450 genus Oleiphilus messinensis 399 1 0 141451 species Oceanospirillaceae 26 1 0 11 4636 135620 family genus 1537406 0 1 467 1 467 0 Bacterioplanes sanyensis species 1249553 28253 genus 1 Marinomonas 1 4 1469 0 species 936476 520 1 0 Marinomonas posidonica species 119864 0 1 351 Marinomonas mediterranea 196814 no rank 0 1 597 1 597 0 Marinomonas sp. MWYL1 species 400668 genus 188907 997 1 0 species 188908 997 1 0 Oleispira antarctica 187492 genus 2 Thalassolituus 1 0 371 2 187493 species Thalassolituus oleivorans 369 1 0 0 1306 2 Marinobacterium 515 1 genus 48075 Marinobacterium aestuarii 791 1 0 1821621 species 1 Hahellaceae 1 3 573 0 224379 family Hahella 6 1 0 2 572 158481 genus 158327 species Hahella chejuensis 566 1 0 4 Saccharospirillaceae 1 0 4 590 255527 family 1445504 genus 1 2 Gynuella 2 422 0 1445505 species Gynuella sunshinyii 0 1 420 230494 genus 164 1 0 164 1 0 Reinekea forsetii species 1336806 0 1000 6 4 Kangiellaceae 1 family 1920240 261963 genus 9 Kangiella 1 0 5 996 Kangiella sediminilitoris 0 535 1 1144748 species 261964 species Kangiella koreensis 0 1 118 1 64 0 Kangiella geojedonensis species 914150 1561924 species Kangiella profundi 270 1 0 order 135625 21284 28 0 1 3 Pasteurellales family 712 21281 27 0 1 489 Pasteurellaceae 0 1847 2 Glaesserella 1 1 genus 2094023 0 1 1846 Glaesserella parasuis species 738 0 2 2305 745 genus 1 547 0 Pasteurella dagmatis species 754 species 747 1 1758 0 Pasteurella multocida 3 Mannheimia 1 0 2823 4 75984 genus 1 322 0 2645054 no rank Mannheimia sp. USDA-ARS-USMARC-1261 0 322 1 1432056 species species 75985 1 803 0 Mannheimia haemolytica species 85404 1695 1 0 Mannheimia varigena genus 724 4680 6 0 1 64 Haemophilus 0 1 675 [Haemophilus] ducreyi species 730 species 249188 0 278 1 Haemophilus pittmaniae species 727 0 1 2499 Haemophilus influenzae 0 1 291 2609962 no rank species 712310 1 291 0 Haemophilus sp. oral taxon 036 species 729 0 873 1 Haemophilus parainfluenzae 697331 genus 0 1 925 [Mannheimia] succiniciproducens 925 1 0 157673 species 1 Aggregatibacter 16 2915 3 0 416916 genus species 732 0 1 1467 Aggregatibacter aphrophilus Aggregatibacter actinomycetemcomitans 0 1 1432 714 species 0 1272 1 genus 214906 Histophilus somni 1 1272 0 731 species Actinobacillus 8 1 0 2282 5 713 genus 1 293 0 Actinobacillus suis species 716 1 648 0 Actinobacillus equuli species 718 Actinobacillus succinogenes 1 767 0 67854 species 715 species Actinobacillus pleuropneumoniae 566 1 0 0 466 1 genus 155493 750 species Gallibacterium anatis 1 466 0 genus 476528 0 1277 1 47735 species Bibersteinia trehalosi 0 1277 1 135615 order 137 1 0 1 137 0 868 family genus 869 137 1 0 1 137 0 Dichelobacter nodosus species 870 order 135613 0 49 12721 Chromatiales 92 1 family 255526 0 4 835 2 Halothiobacillaceae 1 833 3 0 1 4 Halothiobacillus genus 109262 0 1 429 2636392 no rank species 1860122 429 1 0 Halothiobacillus sp. LS2 927 species Halothiobacillus neapolitanus 0 400 1 0 905 2 family 449719 genus 437504 0 905 2 4 Granulosicoccus 1 1 901 0 Granulosicoccus antarcticus species 437505 family 1046 17 4987 0 1 40 Chromatiaceae 53392 genus Thiodictyon 6 1 0 1255 2 species 1166950 0 1 1249 Candidatus Thiodictyon syntrophicum genus 85072 0 607 1 0 1 607 Allochromatium vinosum species 1049 0 1 498 82569 no rank 1978339 species Chromatiaceae bacterium 2141T.STBD.0c.01a 0 498 1 13724 genus 1 4 Thiocystis 625 2 0 species 73141 1 621 0 Thiocystis violascens 2 436 0 1 Marichromatium 5 genus 85076 species 37487 0 431 1 Marichromatium purpuratum 0 938 4 Nitrosococcus 11 1 genus 1227 Nitrosococcus oceani 436 1 0 1229 species Nitrosococcus halophilus 101 1 0 133539 species species 473531 1 390 0 Nitrosococcus watsonii 2 400 0 1 Thioflavicoccus 4 genus 156885 Thioflavicoccus mobilis 396 1 0 80679 species 1 2 Candidatus Nitrosoglobus 2 188 0 1980513 genus species 1630141 0 1 186 Candidatus Nitrosoglobus terrae 72276 family 1 28 Ectothiorhodospiraceae 18 4575 0 genus 1051 0 2 738 Ectothiorhodospira 2 1 no rank 2684909 1 736 0 1442136 species Ectothiorhodospira sp. BSL-9 1 736 0 0 539 2 Alkalilimnicola 5 1 genus 133193 0 534 1 Alkalilimnicola ehrlichii species 351052 1 Halorhodospira 1 372 2 0 85108 genus 371 1 0 Halorhodospira halophila species 1053 27 Thioalkalivibrio 1 0 2178 6 106633 genus no rank 2621013 1 344 0 Thioalkalivibrio sp. K90mix 0 1 344 396595 species species 108010 1 329 0 Thioalkalivibrio paradoxus Thioalkalivibrio sulfidiphilus 1 648 0 1033854 species 106634 species Thioalkalivibrio versutus 1 530 0 186931 species Thioalkalivibrio nitratireducens 0 1 300 1 Spiribacter 2 3 492 0 1335745 genus 1 393 0 Spiribacter curvatus species 1335757 1335746 species Spiribacter salinus 0 1 97 genus 1765964 0 2 228 Acidihalobacter 2 1 0 226 1 Acidihalobacter prosperus species 160660 3 463 0 1 Wenzhouxiangellaceae 5 family 1676141 1 10 Wenzhouxiangella 2 458 0 1676142 genus 0 1 448 Wenzhouxiangella marina species 1579979 0 591 2 no rank 451214 2 591 0 1 Thiohalobacter 10 genus 1273155 585455 species Thiohalobacter thiocyanaticus 0 581 1 family 1738654 2 273 0 genus 1738655 0 273 2 3 Woeseia 1 0 1 270 Woeseia oceani species 1548547 1 Nevskiales 1 0 4 419 1775403 order family 2689614 0 405 2 genus 469322 405 2 0 1 Steroidobacter 5 species 465721 1 400 0 Steroidobacter denitrificans 568386 family Sinobacteraceae 0 13 1 101 43423 0 1 61 Alteromonadales order 135622 family 267890 11030 25 0 1 117 Shewanellaceae 22 genus Shewanella 84 1 0 10913 24 species 24 0 344 1 Shewanella putrefaciens species 260364 243 1 0 Shewanella marisflavi Shewanella woodyi 424 1 0 60961 species species 271097 442 1 0 Shewanella sediminis species 70864 572 1 0 Shewanella pealeana species 192073 0 429 1 Shewanella denitrificans species 93973 1 324 0 Shewanella japonica species 271098 0 759 1 Shewanella halifaxensis Shewanella violacea 1 191 0 60217 species 1 237 0 Shewanella frigidimarina species 56812 359303 species Shewanella loihica 814 1 0 species 60478 1 439 0 Shewanella amazonensis 2018305 species Shewanella bicestrii 1 325 0 70863 species Shewanella oneidensis 1 437 0 6 2185 0 no rank 196818 0 175 1 Shewanella sp. WE21 species 2029986 0 382 1 Shewanella sp. Pdp11 species 2059264 60481 species Shewanella sp. MR-7 372 1 0 species 94122 353 1 0 Shewanella sp. ANA-3 0 1 307 Shewanella sp. W3-18-1 species 351745 species 60480 1 596 0 Shewanella sp. MR-4 species 404011 346 1 0 Shewanella piezotolerans Shewanella psychrophila 0 1 811 225848 species species 62322 0 1 1507 Shewanella baltica 0 5299 9 9 Colwelliaceae 1 family 267889 1518149 genus Thalassotalea 2 1 0 693 2 Thalassotalea crassostreae 1 691 0 1763536 species 0 6 4597 3 Colwellia 1 genus 28228 no rank 196834 3 2485 0 0 305 1 Colwellia sp. PAMC 21821 species 1816219 58049 species Colwellia sp. MT41 0 925 1 Colwellia sp. PAMC 20917 1 1255 0 1816218 species species 1967665 0 1161 1 Colwellia beringensis 0 1 948 Colwellia psychrerythraea species 28229 0 25 12297 8 Pseudoalteromonadaceae 1 family 267888 genus 53246 12289 24 0 1 Pseudoalteromonas 105 species 247523 0 1 617 Pseudoalteromonas aliena Pseudoalteromonas tunicata 0 873 1 314281 species Pseudoalteromonas nigrifaciens 0 738 1 28109 species 1 479 0 Pseudoalteromonas phenolica species 161398 Pseudoalteromonas luteoviolacea 1 290 0 43657 species Pseudoalteromonas rubra 477 1 0 43658 species Pseudoalteromonas atlantica 0 376 1 288 species species 267375 0 170 1 Pseudoalteromonas marina Pseudoalteromonas arctica 545 1 0 394751 species species 43659 0 541 1 Pseudoalteromonas tetraodonis 152297 species Pseudoalteromonas issachenkonii 0 552 1 43662 species Pseudoalteromonas piscicida 512 1 0 1348114 species Pseudoalteromonas piratica 777 1 0 species 228 1 700 0 Pseudoalteromonas haloplanktis species 298657 0 753 1 Pseudoalteromonas spongiae no rank 194690 2632 5 0 Pseudoalteromonas sp. Bsw20308 1 836 0 283699 species 1514074 species Pseudoalteromonas sp. NC201 0 1 235 216 1 0 Pseudoalteromonas sp. 13-15 species 1761891 species 234831 471 1 0 Pseudoalteromonas sp. SM9913 1720343 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 874 0 species 176102 1 187 0 Pseudoalteromonas agarivorans 0 631 1 Pseudoalteromonas translucida species 166935 28107 species Pseudoalteromonas espejiana 0 334 1 2 887 0 267891 family Moritella 1 1 0 2 887 58050 genus 0 1 886 Moritella viscosa species 80854 family 267893 0 6 1164 14 Idiomarinaceae 1 genus 135575 1150 5 0 1 Idiomarina 8 1 463 0 Idiomarina loihiensis species 135577 species 1096243 0 289 1 Idiomarina piscisalsi 2614829 no rank 2 390 0 species 2100422 247 1 0 Idiomarina sp. OT37-5b Idiomarina sp. X4 0 143 1 2055892 species 0 3 1412 family 267894 4 Psychromonas 1 0 3 1412 67572 genus 2614957 no rank 1 673 0 Psychromonas sp. CNPT3 0 1 673 314282 species 735 1 0 Psychromonas ingrahamii species 357794 540 2 0 family 267892 Ferrimonas 18 1 0 540 2 44011 genus Ferrimonas balearica 1 522 0 44012 species family 72275 28 10733 0 1 Alteromonadaceae 26 2 603 0 1 Lacimicrobium 2 genus 1751872 0 601 1 Lacimicrobium alkaliphilum species 1526571 89404 genus 2 714 0 Glaciecola nitratireducens 0 1 438 300231 species 2618684 no rank 1 276 0 983545 species Glaciecola sp. 4H-3-7+YE-5 276 1 0 226 genus 1 Alteromonas 61 5269 10 0 Alteromonas macleodii 1378 1 0 28108 species 687 1 0 Alteromonas stellipolaris species 233316 species 314275 0 820 1 Alteromonas mediterranea 2614992 no rank 1308 3 0 0 1 372 Alteromonas sp. Mac1 species 1777491 Alteromonas sp. MB-3u-76 0 1 219 2058133 species Alteromonas sp. RW2A1 0 1 717 1917158 species Alteromonas naphthalenivorans 377 1 0 715451 species 0 1 181 Alteromonas australica species 589873 287094 species Alteromonas addita 1 457 0 Marinobacter 18 1 0 3643 10 2742 genus Marinobacter similis 0 530 1 1420916 species 1420917 species Marinobacter salarius 386 1 0 species 1874317 1 590 0 Marinobacter salinus Marinobacter psychrophilus 0 1 302 330734 species Marinobacter adhaerens 0 1 307 1033846 species 0 846 3 83889 no rank 1 251 0 Marinobacter sp. CP1 species 1671721 490759 species Marinobacter sp. BSs20148 305 1 0 1749259 species Marinobacter sp. LQ44 290 1 0 0 664 1 Marinobacter hydrocarbonoclasticus species 2743 genus 261825 327 2 0 1 7 Agarivorans species 680279 0 320 1 Agarivorans gilvus 0 1 151 1621534 genus 0 151 1 Paraglaciecola psychrophila species 326544 order 1692040 0 6 750 Acidiferrobacterales 10 1 family 1692041 0 5 740 16 Acidiferrobacteraceae 1 1692042 genus Sulfurifustis 5 1 0 2 384 Sulfurifustis variabilis 1 379 0 1675686 species 1744881 genus 1 13 Sulfuricaulis 2 340 0 Sulfuricaulis limicola 0 1 327 1620215 species order 118969 0 8058 19 5 Legionellales 1 family 444 14 7531 0 1 Legionellaceae 5 465 genus 0 1 616 species 451 616 1 0 Tatlockia micdadei 6910 12 0 1 Legionella 4 genus 445 Legionella oakridgensis 0 403 1 29423 species 452 species Legionella spiritensis 0 275 1 species 449 1 339 0 Legionella hackeliae 1867846 species Legionella clemsonensis 0 377 1 species 2005262 0 84 1 Legionella endosymbiont of Polyplax serrata Legionella pneumophila 0 1 2967 446 species 0 1 380 Legionella waltersii species 66969 Legionella lansingensis 0 1 673 45067 species 0 1 329 Legionella longbeachae species 450 0 1 464 Legionella sainthelensi species 28087 species 96230 0 1 615 Legionella fallonii 1 Coxiellaceae 2 522 4 0 118968 family 0 1 109 no rank 134284 0 1 109 Coxiella-like endosymbiont species 1592897 776 genus 0 2 411 0 148 1 2676648 no rank species 325775 0 1 148 Coxiella endosymbiont of Amblyomma americanum 777 species Coxiella burnetii 0 263 1 clade 2498710 0 2 187 67814 phylum 0 2 187 693071 class 187 2 0 order 693072 0 2 187 family 693073 187 2 0 1 Caldisericaceae 1 genus 693074 1 186 0 186 1 0 Caldisericum exile species 693075 1668 2868930 0 clade 1783272 1859062 no rank 0 189 2 262406 genus 1 1 Thermobaculum 2 189 0 species 166501 1 188 0 Thermobaculum terrenum clade 1798711 54697 136 0 136 54697 0 1 7 Cyanobacteria phylum 1117 52604 order 40 Pleurocapsales 1 0 5 2237 family 1890500 1 240 0 240 1 0 44474 genus 54308 species Pleurocapsa minor 0 1 240 3 1957 0 1890498 family 2 Stanieria 1 0 1957 3 102115 genus 2642663 no rank 836 1 0 species 1807358 1 836 0 Stanieria sp. NIES-3757 102116 species Stanieria cyanosphaera 1119 1 0 order 1890424 53 18818 0 1 154 Synechococcales family 1890436 0 3 131 Pseudanabaenaceae 1 1 2 130 0 1 1 Pseudanabaena genus 1152 1 129 0 2593292 no rank 82654 species Pseudanabaena sp. PCC 7367 1 129 0 0 2166 6 5 Leptolyngbyaceae 1 family 1890438 47251 genus 1 Leptolyngbya 1 0 5 2161 1769 3 0 no rank 2650499 1080068 species Leptolyngbya sp. O-77 0 1 764 111781 species Leptolyngbya sp. PCC 7376 1 576 0 429 1 0 Leptolyngbya sp. NIES-3755 species 1752064 1184 species Leptolyngbya boryana 0 1 391 1890428 family 0 751 4 4 751 0 1 15 Synechocystis genus 1142 0 3 736 2640012 no rank 2116702 species Synechocystis sp. IPPAS B-1465 0 1 307 species 1148 307 1 0 Synechocystis sp. PCC 6803 1147 species Synechocystis sp. PCC 6714 0 1 122 family 1213 0 2313 4 1 1 Prochlorococcus 4 2313 0 1218 genus 0 299 2 2627481 no rank Prochlorococcus sp. MIT 0801 0 1 137 1501269 species 1501268 species Prochlorococcus sp. MIT 0604 1 162 0 species 1219 0 2013 1 Prochlorococcus marinus 0 949 1 family 2303730 949 1 0 170610 genus Halomicronema hongdechloris 0 949 1 1209493 species family 1890429 1 829 0 829 1 0 genus 155977 Acaryochloris marina 1 829 0 155978 species family 1890426 33 11525 0 1 17 Synechococcaceae 1129 genus Synechococcus 88 1 0 9641 26 33070 species Synechococcus lividus 0 1532 1 0 23 7873 2626047 no rank 321327 species Synechococcus sp. JA-3-3Ab 0 1 813 195248 species Synechococcus sp. PCC 8807 0 390 1 Synechococcus sp. CC9311 625 1 0 64471 species Synechococcus sp. KORDI-52 0 1 308 585425 species species 195498 310 1 0 Synechococcus sp. PCC 7117 species 374982 0 1 386 Synechococcus sp. PCC 73109 1 170 0 Synechococcus sp. PCC 6312 species 195253 0 266 1 Synechococcus sp. WH 8103 species 29410 424 1 0 Synechococcus sp. NIES-970 species 1827144 species 110662 1 179 0 Synechococcus sp. CC9605 1350461 species Synechococcus sp. UTEX 2973 1 137 0 species 166314 0 328 1 Synechococcus sp. WH 8109 species 32049 298 1 0 Synechococcus sp. PCC 7002 32051 species Synechococcus sp. WH 7803 1 359 0 species 585423 183 1 0 Synechococcus sp. KORDI-49 Synechococcus sp. PCC 7502 564 1 0 1173263 species 1 576 0 Synechococcus sp. RCC307 species 316278 species 84588 0 1 416 Synechococcus sp. WH 8102 species 316279 187 1 0 Synechococcus sp. CC9902 1 340 0 Synechococcus sp. JA-2-3B'a(2-13) species 321332 Synechococcus sp. KORDI-100 0 248 1 1280380 species 0 1 142 Synechococcus sp. PCC 7003 species 374981 species 1916956 0 1 224 Synechococcus sp. SynAce01 32046 species Synechococcus elongatus 0 1 148 1 198 0 genus 146785 0 198 1 Thermosynechococcus elongatus species 146786 genus 13034 2 384 0 1 Dactylococcopsis 4 292566 species Dactylococcopsis salina 0 1 380 3 1285 0 1 16 Cyanobium genus 167375 Cyanobium gracile 0 1 546 59930 species 1 723 0 no rank 2627006 723 1 0 Cyanobium sp. NIES-981 species 1851505 307596 class 1 4 Gloeobacteria 6 915 0 Gloeobacterales 17 1 0 911 5 307595 order 1890422 family Gloeobacteraceae 15 1 0 4 894 879 3 0 1 8 Gloeobacter genus 33071 species 33072 0 1 375 Gloeobacter violaceus Gloeobacter kilaueensis 1 496 0 1416614 species Nostocales 26 1 0 32 18959 1161 order 16 Nostocaceae 1 0 18 12809 1162 family 0 3 847 1 Trichormus 1 genus 264688 Trichormus variabilis 0 1 420 264691 species Trichormus azollae 1 426 0 1164 species 10 9335 0 1 Nostoc 71 genus 1177 1306274 species Nostoc flagelliforme 2199 1 0 Nostoc punctiforme 1 1061 0 272131 species no rank 2593658 0 6004 7 1869241 species Nostoc sp. CENA543 976 1 0 880 1 0 Nostoc sp. PCC 7524 species 28072 536 1 0 Nostoc sp. PCC 7120 species 103690 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1167 1 0 1261031 species 1 527 0 Nostoc sp. PCC 7107 species 317936 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 854 1 1618022 species 1064 1 0 Nostoc sp. NIES-3756 species 1751286 genus 1163 0 2611 4 33 Anabaena 1 no rank 2619674 0 2 1660 1647413 species Anabaena sp. WA102 0 1134 1 Anabaena sp. 90 1 526 0 46234 species 1165 species Anabaena cylindrica 0 1 918 1 724 0 1892263 family 0 1 724 genus 1190 724 1 0 no rank 494603 1752063 species Fischerella sp. NIES-3754 0 1 724 0 3 1132 3 Rivulariaceae 1 family 1185 2 1129 0 1 Rivularia 1 genus 373984 1128 1 0 2676603 no rank 1128 1 0 Rivularia sp. PCC 7116 species 373994 0 8 3676 2661849 family genus 1186 0 3676 8 Calothrix 36 1 0 3107 6 2619626 no rank 1 387 0 Calothrix sp. 336/3 species 1337936 Calothrix sp. NIES-2098 1 477 0 1954171 species 2005461 species Calothrix sp. NIES-4101 597 1 0 species 99598 1 374 0 Calothrix sp. PCC 7507 2005469 species Calothrix sp. NIES-4071 0 814 1 458 1 0 Calothrix sp. NIES-3974 species 2005462 Calothrix parietina 1 533 0 32054 species 1219117 no rank 1 592 0 Nostocales cyanobacterium HT-58-2 0 1 592 1940762 species 1983111 no rank 0 144 1 cyanobacterium endosymbiont of Epithemia turgida 1 144 0 718217 species 1890505 order 479 2 0 family 1890528 0 479 2 genus 54298 0 2 479 Chroococcidiopsis 4 1 54299 species Chroococcidiopsis thermalis 475 1 0 1301283 subclass 36 13138 0 1 Oscillatoriales 20 3847 15 0 1150 order 1892251 family 1 2 Coleofasciculaceae 470 2 0 genus 63132 1 468 0 0 468 1 2648775 no rank 1173025 species Geitlerinema sp. PCC 7407 0 1 468 family 1892255 0 523 2 Gomontiellaceae 13 1 genus 241421 1 510 0 241425 species Crinalium epipsammum 510 1 0 1892254 family 4 1360 0 genus 1158 860 3 0 1 4 Oscillatoria 482564 species Oscillatoria nigro-viridis 0 457 1 species 118323 399 1 0 Oscillatoria acuminata genus 1155738 1 500 0 1155739 species Moorea producens 1 500 0 1892249 family Cyanothecaceae 2 1 0 282 3 2 280 0 1 3 Cyanothece genus 43988 2649277 no rank 0 1 277 395961 species Cyanothece sp. PCC 7425 277 1 0 1 2 Microcoleaceae 3 1192 0 1892252 family 1205 genus 0 538 1 1206 species Trichodesmium erythraeum 0 1 538 0 1 652 genus 44471 0 1 652 2642155 no rank 652 1 0 Microcoleus sp. PCC 7113 species 1173027 Chroococcales 4 1 0 21 9291 1118 order 0 6 2658 11 Chroococcaceae 1 family 1890464 0 247 1 102231 genus 0 1 247 no rank 2623012 1173026 species Gloeocapsa sp. PCC 7428 247 1 0 genus 268175 573 1 0 0 573 1 no rank 2648896 0 1 573 Chondrocystis sp. NIES-4102 species 2005460 1827 3 0 1 Geminocystis 1 genus 669357 1826 2 0 2625037 no rank Geminocystis sp. NIES-3708 0 1 1083 1615909 species 743 1 0 Geminocystis sp. NIES-3709 species 1617448 430 1 0 1890452 family 0 1 430 102234 genus species 379064 1 430 0 Cyanobacterium aponinum 1890450 family 1 Aphanothecaceae 1 5227 9 0 1453359 genus 0 246 1 species 713887 0 1 246 Candidatus Atelocyanobacterium thalassa no rank 92682 0 2 199 Halothece 5 1 0 199 2 76023 genus 1 194 0 2632878 no rank Halothece sp. PCC 7418 0 1 194 65093 species 1 507 0 genus 263510 0 1 507 species 2546360 43989 strain Cyanothece sp. ATCC 51142 0 507 1 genus 2546365 0 2 2137 2546366 species 0 2 2137 Cyanothece sp. PCC 8801 1249 1 0 41431 strain strain 395962 0 888 1 Cyanothece sp. PCC 8802 genus 28070 2 2137 0 2546356 species 1 1552 0 1 1552 0 Cyanothece sp. PCC 7424 strain 65393 0 585 1 species 2546359 strain 497965 0 1 585 Cyanothece sp. PCC 7822 0 972 4 Microcystaceae 5 1 family 1890449 1125 genus 1 Microcystis 3 3 967 0 Microcystis aeruginosa 0 1 547 1126 species 2643300 no rank 0 417 1 1967666 species Microcystis sp. MC19 1 417 0 67819 phylum 5 296 0 Fimbriimonadia 1 1 0 5 296 1663419 class 1 Fimbriimonadales 2 4 295 0 1663425 order 0 3 293 4 Fimbriimonadaceae 1 family 1663426 1005038 genus 1 1 Fimbriimonas 289 2 0 species 1005039 1 288 0 Fimbriimonas ginsengisoli 201174 phylum 31 Actinobacteria 1 0 338502 641 1 Actinobacteria 1490 263908 588 0 1760 class 85009 order 63 Propionibacteriales 1 0 33 8746 31957 family 1 81 Propionibacteriaceae 19 5954 0 0 1685 5 Tessaracoccus 10 1 genus 72763 1332264 species Tessaracoccus aquimaris 0 1 442 427 1 0 2635419 no rank Tessaracoccus sp. T2.5-30 427 1 0 1909732 species 1610493 species Tessaracoccus flavus 1 370 0 Tessaracoccus flavescens 436 1 0 399497 species 29404 genus Microlunatus 6 1 0 2 283 species 29405 0 277 1 Microlunatus phosphovorus 2801844 genus 268 1 0 0 268 1 Pseudopropionibacterium propionicum species 1750 genus 203133 0 650 1 no rank 2633994 0 650 1 1871034 species Propionimicrobium sp. Marseille-P3275 0 650 1 0 963 4 6 Cutibacterium 1 genus 1912216 species 1747 0 309 1 Cutibacterium acnes species 33010 458 1 0 Cutibacterium avidum 33011 species Cutibacterium granulosum 190 1 0 20 Propionibacterium 1 0 3 1273 1743 genus 2608905 no rank 1 184 0 species 671223 1 184 0 Propionibacterium sp. oral taxon 193 Propionibacterium freudenreichii 1 1069 0 1744 species 0 2 751 2 Acidipropionibacterium 1 genus 1912215 Acidipropionibacterium acidipropionici 0 1 749 1748 species family 85015 2729 13 0 1 51 Nocardioidaceae 0 405 2 Micropruina 18 1 genus 116071 Micropruina glycogenica 387 1 0 75385 species 985 4 0 1 Nocardioides 17 genus 1839 no rank 2615069 0 1 369 0 369 1 Nocardioides sp. JS614 species 196162 Nocardioides sp. 78 0 327 1 2045452 species 272 1 0 Nocardioides dokdonensis species 450734 417 2 0 1 2 Pimelobacter genus 2044 Pimelobacter simplex 1 415 0 2045 species Kribbella 11 1 0 2 459 182639 genus species 182640 1 448 0 Kribbella flavida genus 2040 0 412 2 7 Aeromicrobium 1 405 1 0 Aeromicrobium erythreum species 2041 1 Nakamurellales 1 0 532 4 1643684 order 1 5 Nakamurellaceae 531 3 0 85031 family 1 Nakamurella 7 2 526 0 53460 genus 53461 species Nakamurella multipartita 0 519 1 0 2 347 1643818 no rank genus 147067 347 2 0 1 2 Thermobispora species 2006 1 345 0 Thermobispora bispora 85013 order 8 Frankiales 1 0 1747 7 6 1739 0 1 Frankiaceae 25 family 74712 1854 genus 22 Frankia 1 0 5 1714 0 573 1 Frankia inefficax species 298654 no rank 2632575 366 1 0 species 298653 1 366 0 Frankia sp. EAN1pec species 106370 1 251 0 Frankia casuarinae 1 502 0 Frankia alni species 1859 1 41 Bifidobacteriales 26 76362 0 85004 order 1614 Bifidobacteriaceae 1 0 25 76321 31953 family 0 1 266 genus 196081 species 78259 0 1 266 Scardovia inopinata Gardnerella 1 1 0 799 2 2701 genus 0 1 798 Gardnerella vaginalis species 2702 genus 1678 0 73187 19 1003 Bifidobacterium 1 258 1 0 Bifidobacterium indicum species 1691 species 1687 0 364 1 Bifidobacterium coryneforme species 1683 0 1 1343 Bifidobacterium angulatum species 158787 0 842 1 Bifidobacterium scardovii species 216816 0 26398 1 Bifidobacterium longum 1 633 0 Bifidobacterium dentium species 1689 Bifidobacterium actinocoloniiforme 0 352 1 638619 species 35760 species Bifidobacterium choerinum 1 773 0 species 1694 0 915 1 Bifidobacterium pseudolongum species 28025 0 770 1 Bifidobacterium animalis Bifidobacterium thermophilum 0 413 1 33905 species 1684 species Bifidobacterium asteroides 1 513 0 0 1 10587 Bifidobacterium adolescentis species 1680 Bifidobacterium bifidum 0 1 6517 1681 species species 1686 5061 2 0 1 Bifidobacterium catenulatum 1541 Bifidobacterium kashiwanohense 1 3520 0 630129 subspecies 0 1 4654 Bifidobacterium breve species 1685 species 28026 1 11791 0 Bifidobacterium pseudocatenulatum genus 196082 0 455 2 1 Parascardovia 1 78258 species Parascardovia denticolens 1 454 0 1 Glycomycetales 8 549 4 0 85014 order 85034 family Glycomycetaceae 4 1 0 3 541 2 537 0 1 9 Stackebrandtia genus 283810 species 283811 0 1 528 Stackebrandtia nassauensis order 85008 0 20 7424 Micromonosporales 40 1 28056 family 1 Micromonosporaceae 88 19 7384 0 genus 1865 0 6 3651 Actinoplanes 58 1 0 1 789 Actinoplanes missouriensis species 1866 no rank 2626549 3 2142 0 Actinoplanes sp. SE50/110 0 1 674 134676 species 0 674 1 Actinoplanes sp. SE50 species 2033844 species 649831 0 1 794 Actinoplanes sp. N902-109 Actinoplanes friuliensis 0 662 1 196914 species 0 3 578 Salinispora 6 1 genus 168694 species 168695 0 256 1 Salinispora tropica 168697 species Salinispora arenicola 0 1 316 genus 673534 0 4 1581 28 Plantactinospora 1 3 1553 0 2631981 no rank Plantactinospora sp. BC1 507 1 0 2108470 species 1 565 0 Plantactinospora sp. BB1 species 2071627 2024580 species Plantactinospora sp. KBS50 481 1 0 0 1485 4 31 Micromonospora 1 genus 1873 0 1 398 Verrucosispora maris species 1003110 species 47850 0 571 1 Micromonospora aurantiaca 485 1 0 2617518 no rank Micromonospora sp. L5 485 1 0 648999 species 84593 genus Verrucosispora 1 1 0 0 3 836 order 414714 family 414877 0 836 3 8 Catenulisporaceae 1 23 Catenulispora 1 0 2 828 414878 genus 304895 species Catenulispora acidiphila 0 805 1 85006 order 310 Micrococcales 1 0 34753 141 1 4 Brevibacteriaceae 3 474 0 85019 family 1 5 Brevibacterium 470 2 0 1696 genus species 1703 0 1 465 Brevibacterium linens 48 11210 0 1 Microbacteriaceae 97 family 85023 genus 337004 0 216 2 Microcella 2 1 0 1 214 Microcella alkaliphila species 279828 1434032 genus 1 107 0 1159327 species Pontimonas salivibrio 1 107 0 no rank 1655488 2 174 0 clade 1655489 0 2 174 0 2 174 529883 genus 529884 species Rhodoluna lacicola 69 1 0 species 535712 0 1 105 Candidatus Rhodoluna planktonica 293 3 0 1 Rathayibacter 3 genus 33886 species 145458 0 1 74 Rathayibacter toxicus 0 216 1 Rathayibacter tritici species 33888 genus 1573 1490 6 0 1 86 Clavibacter species 28447 1404 5 0 1 256 Clavibacter michiganensis 31963 subspecies Clavibacter nebraskensis 0 1 264 subspecies 33014 0 1 287 Clavibacter insidiosus Clavibacter capsici 1 300 0 1874630 subspecies 31964 subspecies Clavibacter sepedonicus 1 297 0 Cnuibacter 1 1 0 361 2 1759331 genus Cnuibacter physcomitrellae 1 360 0 1619308 species 1 9 Cryobacterium 1059 3 0 69578 genus 0 1 618 no rank 2649013 Cryobacterium sp. LW097 1 618 0 1978566 species Cryobacterium arcticum 0 1 432 670052 species 384 2 0 1 Agromyces 8 genus 33877 1 376 0 Agromyces aureus species 453304 0 327 2 6 Microterricola 1 genus 518733 412690 species Microterricola viridarii 1 321 0 genus 447237 502 2 0 1 2 Frondihabitans 2626248 no rank 0 500 1 1795630 species Frondihabitans sp. PAMC 28766 0 500 1 144 Microbacterium 1 0 14 4158 33882 genus 242 1 0 Microbacterium testaceum species 2033 Microbacterium aurum 1 444 0 36805 species 84292 species Microbacterium chocolatum 224 1 0 162426 species Microbacterium hominis 0 1 298 300019 species Microbacterium paludicola 1 300 0 2609290 no rank 0 2506 8 species 1938334 0 256 1 Microbacterium sp. TPU 3598 0 1 252 Microbacterium sp. 1.5R species 1916917 Microbacterium sp. CGR1 1 216 0 1696072 species Microbacterium sp. str. 'China' 0 300 1 2103230 species species 1714373 0 1 512 Microbacterium sp. No. 7 species 1795053 305 1 0 Microbacterium sp. PAMC 28756 1906742 species Microbacterium sp. BH-3-3-3 0 1 362 species 367477 303 1 0 Microbacterium sp. XT11 4 1178 0 1 10 Curtobacterium genus 2034 0 584 2 257496 no rank species 1905847 296 1 0 Curtobacterium sp. BH-2-1-1 288 1 0 Curtobacterium sp. MR_MD2014 species 1561023 69373 species Curtobacterium pusillum 1 584 0 0 712 2 8 Leifsonia 1 genus 110932 1575 species Leifsonia xyli 0 1 704 1705353 genus Aurantimicrobium 2 1 0 152 2 708131 species Aurantimicrobium minutum 0 1 150 1 Dermacoccaceae 7 6 924 0 145357 family genus 57495 1 298 0 Dermacoccus nishinomiyaensis 1 298 0 1274 species 1 Luteipulveratus 6 2 317 0 745364 genus Luteipulveratus mongoliensis 311 1 0 571913 species 1 4 Kytococcus 2 302 0 57499 genus Kytococcus sedentarius 0 1 298 1276 species 85021 family 1 29 Intrasporangiaceae 1326 9 0 1 6 Janibacter 298 2 0 53457 genus 857417 species Janibacter indicus 0 292 1 0 395 2 Arsenicicoccus 2 1 genus 267408 no rank 2663846 1 393 0 Arsenicicoccus sp. oral taxon 190 0 393 1 1658671 species 12 Serinicoccus 1 0 373 2 265976 genus 0 361 1 Serinicoccus sp. JLT9 species 1758689 1 Intrasporangium 4 231 2 0 53357 genus 1 227 0 Intrasporangium calvum species 53358 85018 family 0 1 263 1 263 0 genus 1862 0 263 1 Dermatophilus congolensis species 1863 145360 family 0 2 378 1 1 Sanguibacter 378 2 0 60919 genus 60920 species Sanguibacter keddieii 1 377 0 1268 family 1 Micrococcaceae 245 38 13284 0 genus 2078575 0 1 300 Arthrobacter sp. IHBB 11108 1 300 0 1618207 species 1 Kocuria 16 4 970 0 57493 genus 71999 species Kocuria palustris 248 1 0 species 72000 0 1 360 Kocuria rhizophila 346 1 0 Kocuria flava species 446860 0 2 366 Sinomonas 3 1 genus 596707 species 37927 0 363 1 Sinomonas atrocyanea 2 215 0 1 8 Neomicrococcus genus 1868332 Neomicrococcus aestuarii 1 207 0 556325 species genus 1663 0 6290 15 Arthrobacter 116 1 Arthrobacter crystallopoietes 0 1 827 37928 species no rank 235627 0 4677 12 Arthrobacter sp. YN 445 1 0 2020486 species species 1806905 1 272 0 Arthrobacter sp. ZXY-2 species 2079227 322 1 0 Arthrobacter sp. PGP41 Arthrobacter sp. FB24 0 1 326 290399 species species 1704044 1 511 0 Arthrobacter sp. ERGS1:01 1652545 species Arthrobacter sp. YC-RL1 0 400 1 1357915 species Arthrobacter sp. QXT-31 1 373 0 1849032 species Arthrobacter sp. U41 0 1 382 248 1 0 Arthrobacter sp. ATCC 21022 species 1771959 1118963 species Arthrobacter sp. Rue61a 1 406 0 1690248 species Arthrobacter sp. LS16 0 592 1 Arthrobacter sp. PAMC 25486 400 1 0 1494608 species species 656366 1 670 0 Arthrobacter alpinus Paenarthrobacter 3 1 0 243 2 1742992 genus Paenarthrobacter aurescens 240 1 0 43663 species 774 1 0 1742989 genus species 256701 774 1 0 Glutamicibacter arilaitensis 0 1318 4 Pseudarthrobacter 17 1 genus 1742993 species 121292 1 424 0 Pseudarthrobacter sulfonivorans 0 1 466 Pseudarthrobacter phenanthrenivorans species 361575 Pseudarthrobacter chlorophenolicus 0 1 411 85085 species genus 1645 0 145 1 0 145 1 Renibacterium salmoninarum species 1646 genus 32207 1895 3 0 1 6 Rothia 0 1511 1 Rothia mucilaginosa species 43675 Rothia dentocariosa 0 378 1 2047 species 1 Micrococcus 4 523 2 0 1269 genus 1 519 0 Micrococcus luteus species 1270 1 Promicromonosporaceae 12 1911 9 0 85017 family 1 Isoptericola 14 3 612 0 254250 genus species 139208 0 305 1 Isoptericola variabilis 293 1 0 Isoptericola dokdonensis species 372663 5 Cellulosimicrobium 1 0 3 741 157920 genus 0 1 435 2624466 no rank Cellulosimicrobium sp. TH-20 1 435 0 1980001 species species 1710 0 301 1 Cellulosimicrobium cellulans genus 186188 2 546 0 1 Xylanimonas 5 Xylanimonas cellulosilytica 541 1 0 186189 species 5 Beutenbergiaceae 1 0 3 269 125316 family genus 84756 0 264 2 Beutenbergia 6 1 84757 species Beutenbergia cavernae 0 258 1 577468 no rank 0 1 128 2038 genus 0 128 1 Tropheryma whipplei 1 128 0 2039 species Dermabacteraceae 20 1 0 2815 11 85020 family 472568 genus 3 Devriesea 1 0 325 2 0 1 322 Devriesea agamarum species 472569 0 2 229 1 Dermabacter 1 genus 36739 species 1630135 1 228 0 Dermabacter vaginalis Brachybacterium 28 1 0 2241 6 43668 genus 2017485 species Brachybacterium sp. VR2415 0 362 1 Brachybacterium ginsengisoli 656 1 0 1331682 species Brachybacterium faecium 0 1 347 43669 species 0 461 1 Brachybacterium sp. VM2412 species 2017484 1 387 0 2623841 no rank Brachybacterium sp. P6-10-X1 387 1 0 1903186 species family 85016 0 6 1341 7 Cellulomonadaceae 1 Cellulomonas 20 1 0 1334 5 1707 genus 11 species Cellulomonas gilvus 377 1 0 1708 species Cellulomonas fimi 0 340 1 Cellulomonas flavigena 1 295 0 1711 species 302 1 0 no rank 2620175 2003551 species Cellulomonas sp. PSBB021 302 1 0 85022 family 1 Jonesiaceae 1 120 3 0 genus 43673 0 119 2 3 Jonesia 1 Jonesia denitrificans 1 116 0 43674 species order 622452 0 498 4 1 Kineosporiales 1 0 3 497 8 Kineosporiaceae 1 family 83778 489 2 0 1 Kineococcus 5 genus 33981 species 131568 1 484 0 Kineococcus radiotolerans 0 8 1438 4 Geodermatophilales 1 order 1643682 family 85030 1434 7 0 1 Geodermatophilaceae 58 1860 genus Geodermatophilus 7 1 0 506 2 species 1861 0 1 499 Geodermatophilus obscurus 2 534 0 1 17 Modestobacter genus 88138 0 517 1 Modestobacter marinus species 477641 336 2 0 1 5 Blastococcus genus 38501 138336 species Blastococcus saxobsidens 0 331 1 85010 order 79 Pseudonocardiales 1 0 41 15113 15034 40 0 1 Pseudonocardiaceae 185 family 2070 1 79 Pseudonocardia 2902 8 0 1847 genus 0 6 2328 2619320 no rank Pseudonocardia sp. EC080610-09 418 1 0 1688404 species 1096868 species Pseudonocardia sp. EC080625-04 342 1 0 Pseudonocardia sp. EC080619-01 417 1 0 1096856 species species 1690815 395 1 0 Pseudonocardia sp. HH130630-07 species 1641402 0 1 364 Pseudonocardia sp. HH130629-09 445576 species Pseudonocardia sp. AL041005-10 0 392 1 240495 species Pseudonocardia dioxanivorans 495 1 0 685 2 0 1 4 Kibdelosporangium genus 2029 0 681 1 Kibdelosporangium phytohabitans species 860235 genus 674734 0 2 370 1 Alloactinosynnema 1 1 369 0 no rank 2636053 Alloactinosynnema sp. L-07 0 369 1 1653480 species 0 897 2 10 Kutzneria 1 genus 43356 43357 species Kutzneria albida 0 1 887 224 1 0 genus 1851 0 1 224 Saccharomonospora viridis species 1852 2 561 0 1 4 Saccharopolyspora genus 1835 0 557 1 Saccharopolyspora erythraea species 1836 1813 genus Amycolatopsis 144 1 0 4255 7 species 31958 0 1088 1 Amycolatopsis orientalis no rank 2618356 0 2 1066 0 584 1 Amycolatopsis sp. AA4 species 1896961 482 1 0 Amycolatopsis sp. BJA-103 species 1911175 species 208439 1 693 0 Amycolatopsis japonica 33910 species Amycolatopsis mediterranei 0 700 1 0 564 1 Amycolatopsis methanolica species 1814 36 Actinoalloteichus 1 0 6 1888 65496 genus Actinoalloteichus sp. ADI127-7 0 1 372 1612552 species 0 260 1 Actinoalloteichus hymeniacidonis species 340345 Actinoalloteichus hoggarensis 0 1 486 1470176 species no rank 2644606 2 734 0 1612551 species Actinoalloteichus sp. GBA129-24 0 363 1 371 1 0 Actinoalloteichus sp. AHMU CJ021 species 2072503 0 2 545 3 Saccharothrix 1 genus 2071 0 542 1 Saccharothrix espanaensis species 103731 165301 genus Lentzea 5 1 0 580 2 species 1586287 1 575 0 Lentzea guizhouensis 3 1508 0 1 Actinosynnema 43 genus 40566 Actinosynnema pretiosum 0 736 1 42197 species 0 1 729 Actinosynnema mirum species 40567 Prauserella 7 1 0 434 2 142577 genus Prauserella marina 427 1 0 530584 species 622450 order 0 435 3 3 Actinopolysporaceae 1 0 3 435 622451 family 2 432 0 1 Actinopolyspora 17 genus 1849 species 414996 1 415 0 Actinopolyspora erythraea order 85007 0 161 51352 334 Corynebacteriales 1 1 304 0 697024 no rank 304 1 0 1847725 genus 0 1 304 Lawsonella clevelandensis species 1528099 0 4 586 Dietziaceae 2 1 family 85029 genus 37914 0 584 3 14 Dietzia 1 0 1 192 Dietzia timorensis species 499555 2617939 no rank 378 1 0 Dietzia sp. oral taxon 368 0 1 378 712270 species 1653 family 180 Corynebacteriaceae 1 0 17951 52 51 17771 0 1 Corynebacterium 290 genus 1716 354 1 0 Corynebacterium imitans species 156978 161879 species Corynebacterium kroppenstedtii 0 1 151 43771 species Corynebacterium urealyticum 0 1 262 35757 species Corynebacterium cystitidis 107 1 0 0 1 444 [Brevibacterium] flavum species 92706 0 218 1 Corynebacterium aquilae species 203263 species 161899 1 290 0 Corynebacterium singulare Corynebacterium epidermidicanis 0 1 210 1050174 species 265 1 0 Corynebacterium argentoratense species 42817 Corynebacterium falsenii 0 275 1 108486 species Corynebacterium simulans 0 330 1 146827 species 0 1 733 Corynebacterium kutscheri species 35755 species 160386 0 1 217 Corynebacterium casei Corynebacterium stationis 563 1 0 1705 species species 571915 0 194 1 Corynebacterium mustelae 1 266 0 Corynebacterium resistens species 258224 0 169 1 Corynebacterium flavescens species 28028 Corynebacterium terpenotabidum 0 339 1 89154 species Corynebacterium ureicelerivorans 0 1 240 401472 species 864 2 0 2624378 no rank species 1487956 606 1 0 Corynebacterium sp. ATCC 6931 species 702967 0 1 258 Corynebacterium sp. NML98-0116 152794 species Corynebacterium efficiens 0 276 1 species 161896 0 1 419 Corynebacterium camporealensis 43770 species Corynebacterium striatum 891 1 0 Corynebacterium crudilactis 0 1 600 1652495 species 1 381 0 Corynebacterium callunae species 1721 1 426 0 Corynebacterium deserti species 1408191 1719 species Corynebacterium pseudotuberculosis 237 1 0 species 1717 0 586 1 Corynebacterium diphtheriae 38305 species Corynebacterium vitaeruminis 1 406 0 Corynebacterium halotolerans 1 343 0 225326 species species 1727 1 361 0 Corynebacterium variabile Corynebacterium glutamicum 708 1 0 1718 species 187491 species Corynebacterium glaucum 0 1 162 Corynebacterium humireducens 1 327 0 1223514 species species 1230998 361 1 0 Corynebacterium frankenforstense Corynebacterium marinum 1 329 0 349751 species 1 159 0 Corynebacterium phocae species 161895 217 1 0 Corynebacterium doosanense species 1121358 Corynebacterium maris 0 1 650 575200 species 38289 species Corynebacterium jeikeium 0 602 1 species 1231000 1 288 0 Corynebacterium lactis species 191493 1 339 0 Corynebacterium sphenisci 1072256 species Corynebacterium uterequi 0 1 280 1697 species Corynebacterium ammoniagenes 1 194 0 65058 species Corynebacterium ulcerans 1 276 0 Corynebacterium glyciniphilum 1 327 0 1404244 species 169292 species Corynebacterium aurimucosum 0 1 395 species 136857 0 1 294 Corynebacterium testudinoris 191610 species Corynebacterium atypicum 1 156 0 85028 family 1 Tsukamurellaceae 1 4 684 0 0 3 683 26 Tsukamurella 1 genus 2060 species 57704 379 1 0 Tsukamurella tyrosinosolvens species 2061 1 278 0 Tsukamurella paurometabola 0 9 2755 Gordoniaceae 43 1 family 85026 genus 2053 0 2712 8 Gordonia 87 1 species 2054 0 1 270 Gordonia bronchialis 1 431 0 Gordonia terrae species 2055 2657482 no rank 2 905 0 species 2059875 296 1 0 Gordonia sp. YC-JH1 species 337191 609 1 0 Gordonia sp. KTR9 Gordonia iterans 0 298 1 1004901 species species 1136941 1 349 0 Gordonia phthalatica 84595 species Gordonia polyisoprenivorans 1 372 0 2 Segniliparaceae 1 0 219 3 316606 family genus 286801 217 2 0 1 Segniliparus 4 0 213 1 Segniliparus rotundus species 286802 1 49 Mycobacteriaceae 16388 56 0 1762 family 0 5 1229 670516 genus species 83262 0 138 1 Mycobacterium immunogenum Mycobacterium chelonae 173 1 0 1774 species 1520670 species Mycobacterium stephanolepidis 0 1 217 0 525 1 Mycobacterium abscessus species 36809 1 176 0 Mycobacterium saopaulense species 1578165 1866885 genus 4386 13 0 1771 species Mycobacterium phlei 1 347 0 1800 species Mycobacterium chubuense 1 306 0 0 386 1 Mycobacterium fortuitum species 1766 Mycobacterium thermoresistibile 0 1 332 1797 species 1795 species Mycobacterium neoaurum 0 265 1 species 1772 0 1 476 Mycobacterium smegmatis Mycobacterium aurum 0 1 370 1791 species species 110539 1 284 0 Mycobacterium vanbaalenii 403 1 0 Mycobacterium gilvum species 1804 species 134601 394 1 0 Mycobacterium goodii Mycobacterium vaccae 1 332 0 1810 species species 36814 0 1 249 Mycobacterium rhodesiae species 758802 1 242 0 Mycobacterium litorale genus 1763 34 10074 0 1 683 Mycobacterium 4 535 0 77643 species group Mycobacterium tuberculosis 132 1 0 363 3 1773 species 1765 biotype Mycobacterium bovis 1 116 0 0 115 1 Mycobacterium africanum biotype 33894 78331 species Mycobacterium canettii 172 1 0 species 29311 0 505 1 Mycobacterium haemophilum species 1769 0 146 1 Mycobacterium leprae 0 254 1 Mycobacterium ulcerans species 1809 Mycobacterium marinum 0 1 337 1781 species Mycobacterium dioxanotrophicus 1 603 0 482462 species species 1768 0 396 1 Mycobacterium kansasii 0 4106 13 2642494 no rank 212767 species Mycobacterium sp. JS623 0 1 525 1168287 species Mycobacterium sp. MOTT36Y 0 1 79 Mycobacterium sp. MCS 264 1 0 164756 species Mycobacterium sp. VKM Ac-1817D 0 325 1 1273687 species 1570328 species Mycobacterium sp. NRRL B-3805 1 265 0 1 286 0 Mycobacterium sp. KMS species 189918 338 1 0 Mycobacterium sp. PYR15 species 2051552 1682113 species Mycobacterium sp. YC-RL4 289 1 0 Mycobacterium sp. QIA-37 0 167 1 1561223 species Mycobacterium sp. EPa45 553 1 0 1545728 species species 1920667 283 1 0 Mycobacterium sp. WY10 species 164757 0 312 1 Mycobacterium sp. JLS 1879023 species Mycobacterium sp. djl-10 1 420 0 0 1 363 Mycobacterium liflandii species 261524 species group 120793 8 1855 0 345 1 0 Mycobacterium colombiense species 339268 1764 species Mycobacterium avium 0 1 633 1138383 species Mycobacterium paraintracellulare 0 1 75 344 1 0 Mycobacterium marseillense species 701042 species 1767 0 4 458 Mycobacterium intracellulare 130 1 Mycobacterium yongonense 85 1 0 1203599 subspecies 35617 subspecies Mycobacterium indicus pranii 72 1 0 0 171 1 Mycobacterium chimaera subspecies 222805 291 1 0 2249310 species group 0 1 291 Mycobacterium shigaense species 722731 0 446 2 1073531 genus 875328 species Mycobacterium sinense 0 1 225 0 221 1 Mycobacterium terrae species 1788 1 204 0 genus 697025 Hoyosella subflava 0 1 204 639313 species 1 52 Nocardiaceae 31 12131 0 85025 family Nocardia 50 1 0 7 4081 1817 genus 0 1 522 Nocardia seriolae species 37332 0 876 1 Nocardia cyriacigeorgica species 135487 Nocardia terpenica 792 1 0 455432 species 37326 species Nocardia brasiliensis 1 756 0 562 1 0 Nocardia nova species 37330 0 1 523 Nocardia farcinica species 37329 1827 genus 1 256 Rhodococcus 23 7998 0 0 350 1 Rhodococcus ruber species 1830 1829 species Rhodococcus rhodochrous 0 1 344 species 37919 0 1 1034 Rhodococcus opacus 132919 species Rhodococcus jostii 0 552 1 species 1833 0 1 457 Rhodococcus erythropolis Rhodococcus qingshengii 280 1 0 334542 species 103816 species Rhodococcus pyridinivorans 331 1 0 Rhodococcus fascians 0 1 344 1828 species 191292 species Rhodococcus aetherivorans 1 378 0 0 3411 12 no rank 192944 239 1 0 Rhodococcus sp. 2G species 1570939 Rhodococcus sp. WB1 1 438 0 1033922 species 357 1 0 Rhodococcus sp. H-CA8f species 1727214 1723645 species Rhodococcus sp. 008 0 227 1 0 1 265 Rhodococcus sp. p52 species 935199 0 194 1 Rhodococcus sp. BH4 species 1807790 Rhodococcus sp. PBTS 1 1 335 0 1653478 species Rhodococcus sp. B7740 0 346 1 1564114 species species 1045808 0 292 1 Rhodococcus sp. YL-1 species 1805827 1 279 0 Rhodococcus sp. MTM3W5.2 species 1653479 0 244 1 Rhodococcus sp. PBTS 2 679318 species Rhodococcus sp. WMMA185 0 1 195 0 1 261 Rhodococcus hoagii species 43767 98 Streptomycetales 1 0 82 47971 85011 order 47873 81 0 1 369 Streptomycetaceae family 2062 1883 genus Streptomyces 1251 1 0 75 45003 species 54571 1 934 0 Streptomyces venezuelae Streptomyces sp. XZHG99 1 457 0 2049881 species 0 1 910 Streptomyces albus species 1888 2593676 no rank 0 13454 24 432 1 0 Streptomyces sp. Tue 6075 species 1661694 species 1841249 0 1 783 Streptomyces sp. RTd22 Streptomyces sp. SAT1 457 1 0 1849967 species 1649184 species Streptomyces sp. CFMR 7 587 1 0 Streptomyces sp. Sge12 0 1 419 1972846 species 0 407 1 Streptomyces sp. WAC00288 species 2094021 0 1 534 Streptomyces sp. CdTB01 species 1725411 615 1 0 Streptomyces sp. PAMC 26508 species 1265601 1837283 species Streptomyces sp. S8 1 582 0 1561022 species Streptomyces sp. CCM_MD2014 0 1 607 Streptomyces sp. 769 0 575 1 1262452 species species 234612 1 389 0 Streptomyces sp. TN58 species 1984801 0 398 1 Streptomyces sp. CLI2509 Streptomyces sp. Mg1 472 1 0 465541 species 445 1 0 Streptomyces sp. 3211 species 1964449 0 1 696 Streptomyces sp. P3 species 2135430 1961713 species Streptomyces sp. MOE7 1 528 0 species 444103 548 1 0 Streptomyces sp. CNQ-509 1 579 0 Streptomyces sp. fd1-xmd species 1812480 Streptomyces sp. FR-008 0 1 477 206662 species 1495638 species Streptomyces sp. M56 0 1226 1 species 862751 0 722 1 Streptomyces sp. SirexAA-E species 1751294 1 405 0 Streptomyces sp. 4F 0 571 1 Streptomyces sp. CMB-StM0423 species 2059884 species 1914 0 1 445 Streptomyces lavendulae 68214 species Streptomyces griseochromogenes 0 585 1 68570 species Streptomyces albulus 1 563 0 species 1355015 1 541 0 Streptomyces pluripotens 1940 species Streptomyces albireticuli 0 1 773 193462 species Streptomyces niveus 1 342 0 Streptomyces autolyticus 903 1 0 75293 species 0 1 448 Streptomyces leeuwenhoekii species 1437453 0 593 1 Streptomyces scabiei species 1930 787 1 0 Streptomyces bingchenggensis species 379067 764 1 0 Streptomyces chartreusis species 1969 1901 species Streptomyces clavuligerus 549 1 0 0 464 1 Streptomyces ambofaciens species 1889 47763 species Streptomyces lydicus 1262 1 0 Streptomyces gilvosporeus 572 1 0 553510 species 983 2 0 species group 1477431 0 534 1 Streptomyces sampsonii species 42239 species 1902 0 1 449 Streptomyces coelicolor 1169025 species Streptomyces pratensis 0 1 574 0 471 1 Streptomyces xiamenensis species 408015 species 1971 0 1 422 Streptomyces noursei Streptomyces alfalfae 592 1 0 1642299 species species 164348 1 485 0 Streptomyces puniciscabiei 29303 species Streptomyces cattleya 1 419 0 0 1017 1 Streptomyces malaysiensis species 92644 species 68249 0 945 1 Streptomyces pactum species 1950 1 411 0 Streptomyces peucetius Streptomyces pristinaespiralis 498 1 0 38300 species Streptomyces lividans 589 1 0 1916 species species 68202 0 1 361 Streptomyces fulvissimus Streptomyces parvulus 1 467 0 146923 species Streptomyces xinghaiensis 635 1 0 1038928 species species 1926 0 553 1 Streptomyces reticuli Streptomyces formicae 1 438 0 1616117 species 0 586 1 Streptomyces lincolnensis species 1915 Streptomyces avermitilis 1 723 0 33903 species Streptomyces alboflavus 0 616 1 67267 species Streptomyces violaceusniger 1 1084 0 68280 species 1 429 0 Streptomyces violaceoruber species 1935 species 42684 512 1 0 Streptomyces collinus species 362257 531 1 0 Streptomyces vietnamensis species 1907 0 391 1 Streptomyces glaucescens species 1783515 1 469 0 Streptomyces sp. S10(2016) species 1912 0 1347 1 Streptomyces hygroscopicus 0 1 495 Streptomyces cyaneogriseus species 68192 2 904 0 species group 629295 0 413 1 1482558 species subgroup 1908 species Streptomyces globisporus 0 413 1 491 1 0 species subgroup 1482596 1911 species Streptomyces griseus 0 1 491 285473 species Streptomyces rubrolavendulae 459 1 0 2063 genus 1 25 Kitasatospora 2501 5 0 Kitasatospora setae 566 1 0 2066 species no rank 2633591 0 1 787 2018025 species Kitasatospora sp. MMS16-BH015 0 1 787 68173 species Kitasatospora albolonga 0 494 1 species 1894 0 629 1 Kitasatospora aureofaciens order 85012 4840 15 0 1 Streptosporangiales 22 family 83676 0 2164 6 33 Nocardiopsaceae 1 2013 genus 1 22 Nocardiopsis 4 1749 0 Nocardiopsis alba 1 489 0 53437 species 657 1 0 Nocardiopsis dassonvillei species 2014 0 1 581 Nocardiopsis gilva species 280236 genus 83677 0 382 1 2021 species Thermobifida fusca 0 382 1 2004 family 28 Streptosporangiaceae 1 0 5 1945 0 2 1077 7 Nonomuraea 1 genus 83681 no rank 2593643 1 1070 0 species 1909395 1070 1 0 Nonomuraea sp. ATCC 55076 genus 2000 0 840 2 4 Streptosporangium 1 2001 species Streptosporangium roseum 0 1 836 2012 family 1 Thermomonosporaceae 5 709 3 0 31 Thermomonospora 1 0 704 2 2019 genus 2020 species Thermomonospora curvata 1 673 0 1643683 order 0 151 2 2 151 0 85032 family genus 28048 0 151 2 8 Acidothermus 1 Acidothermus cellulolyticus 143 1 0 28049 species 0 1 304 no rank 52018 species 1650658 0 1 304 Actinobacteria bacterium IMCC26256 0 18 6813 Actinomycetales 15 1 order 2037 family 2049 0 6798 17 Actinomycetaceae 534 1 2529408 genus 0 679 1 Actinomyces meyeri 679 1 0 52773 species 0 1 190 1653174 genus 59505 species Actinotignum schaalii 190 1 0 genus 2050 1007 2 0 1 Mobiluncus 13 0 994 1 Mobiluncus curtisii species 2051 genus 1069494 0 2 531 1 Trueperella 1 species 1661 1 530 0 Trueperella pyogenes 337 1 0 28263 genus 1 337 0 Arcanobacterium haemolyticum species 28264 genus 1654 0 9 3520 Actinomyces 56 1 621 1 0 Actinomyces radicidentis species 111015 Actinomyces gaoshouyii 482 1 0 1960083 species 0 355 1 Actinomyces oris species 544580 no rank 2609248 3 1466 0 0 1 542 Actinomyces sp. oral taxon 897 species 2081702 species 1851395 0 369 1 Actinomyces sp. Chiba101 species 712122 555 1 0 Actinomyces sp. oral taxon 414 Actinomyces sp. VUL4_3 0 1 108 1912795 species 1852377 species Actinomyces pacaensis 0 1 432 order 2039638 0 12 2207 1 Candidatus Nanopelagicales 1 family 2162846 0 2206 11 genus 2039639 4 409 0 1 Candidatus Nanopelagicus 1 0 124 1 Candidatus Nanopelagicus hibericus species 1884915 1884916 species Candidatus Nanopelagicus abundans 80 1 0 Candidatus Nanopelagicus limnes 204 1 0 1884634 species genus 622681 0 7 1797 Candidatus Planktophila 3 1 1884914 species Candidatus Planktophila dulcis 0 1 296 Candidatus Planktophila vernalis 251 1 0 1884907 species Candidatus Planktophila lacus 0 1 459 1884913 species Candidatus Planktophila sulfonica 128 1 0 1884904 species 0 1 364 Candidatus Planktophila limnetica species 573600 species 1884905 0 1 296 Candidatus Planktophila versatilis class 84992 0 6 628 Acidimicrobiia 11 1 84993 order 1 Acidimicrobiales 17 5 617 0 491 2 0 family 2448023 0 2 491 3 Ilumatobacter 1 genus 682522 species 467094 488 1 0 Ilumatobacter coccineus family 84994 0 2 109 Acidimicrobiaceae 12 1 53634 genus 97 1 0 Acidimicrobium ferrooxidans 0 1 97 53635 species 4 675 0 1752188 no rank 0 170 1 Actinobacteria bacterium IMCC25003 species 1848255 0 1 95 Actinobacteria bacterium IMCC26077 species 1848755 1848754 species Actinobacteria bacterium IMCC19121 0 228 1 1848756 species Actinobacteria bacterium IMCC26103 0 1 182 class 84998 0 31 71837 127 Coriobacteriia 1 1643822 order 200 Eggerthellales 1 0 18333 16 1643826 family 1210 Eggerthellaceae 1 0 15 18133 genus 79603 1 796 0 Denitrobacterium detoxificans 0 1 796 79604 species 1 Eggerthella 80 3 4950 0 84111 genus 0 1 1508 2648737 no rank 0 1508 1 Eggerthella sp. YY7918 species 502558 0 3362 1 Eggerthella lenta species 84112 447020 genus 1 Adlercreutzia 1 0 3244 2 species 446660 3243 1 0 Adlercreutzia equolifaciens 1 597 0 1981050 genus Phoenicibacter massiliensis 597 1 0 1944646 species 644652 genus 22 Gordonibacter 1 0 3 4989 1841863 species Gordonibacter massiliensis 1 2043 0 1 2924 0 Gordonibacter urolithinfaciens species 1335613 1 7 Slackia 1881 2 0 84108 genus 0 1 1874 Slackia heliotrinireducens species 84110 84162 genus 1 Cryptobacterium 1 2 466 0 Cryptobacterium curtum 0 465 1 84163 species 84999 order 64 Coriobacteriales 1 0 53377 14 1 Atopobiaceae 20 5478 7 0 1643824 family 133925 genus 1 42 Olsenella 4 4904 0 133926 species Olsenella uli 1507 1 0 0 2362 1 Olsenella sp. Marseille-P2300 species 1805478 1 993 0 2638792 no rank Olsenella sp. oral taxon 807 0 993 1 712411 species 1 1 0 Atopobium genus 1380 genus 2767353 553 1 0 1382 species Atopobium parvulum 0 1 553 84107 family 76 Coriobacteriaceae 1 0 47835 6 no rank 84113 1083 1 0 Coriobacteriaceae bacterium 68-1-3 0 1083 1 1531429 species 1 Coriobacterium 1 0 2 799 33870 genus Coriobacterium glomerans 0 1 798 33871 species 6 Collinsella 1 0 45877 2 102106 genus 74426 species Collinsella aerofaciens 0 45871 1 0 795 5 4 Thermoleophilia 1 class 1497346 order 588673 791 4 0 1 Solirubrobacterales 27 320583 family 8 Conexibacteraceae 1 0 3 764 23 Conexibacter 1 0 756 2 191494 genus 191495 species Conexibacter woesei 0 733 1 628 6 0 1 4 Rubrobacteria class 84995 1 8 Rubrobacterales 5 624 0 84996 order 1 3 Rubrobacteraceae 616 4 0 84997 family 0 613 3 Rubrobacter 14 1 genus 42255 1 422 0 Rubrobacter xylanophilus species 49319 42256 species Rubrobacter radiotolerans 1 177 0 0 35 11346 1297 phylum class 188787 11346 35 0 1 81 Deinococci 3 444 0 order 2762275 1 3 Trueperaceae 3 444 0 332247 family 0 441 2 Truepera 4 1 genus 332248 Truepera radiovictrix 0 1 437 332249 species 0 15 6399 Deinococcales 61 1 order 118964 family 183710 0 6338 14 Deinococcaceae 44 1 13 6294 0 1 Deinococcus 62 genus 1298 species 1309411 0 484 1 Deinococcus soli Cha et al. 2016 Deinococcus geothermalis 0 1 419 68909 species Deinococcus radiodurans 1 585 0 1299 species 0 1 532 Deinococcus actinosclerus species 1768108 310783 species Deinococcus deserti 1 595 0 0 561 1 Deinococcus swuensis species 1182571 432329 species Deinococcus peraridilitoris 1 389 0 1 439 0 2623546 no rank 2080419 species Deinococcus sp. NW-56 0 1 439 0 1 465 Deinococcus proteolyticus species 55148 309887 species Deinococcus maricopensis 467 1 0 502394 species Deinococcus gobiensis 1 588 0 1182568 species Deinococcus puniceus 0 708 1 16 4422 0 1 41 Thermales order 68933 1 Thermaceae 20 4381 15 0 188786 family 0 602 2 3 Oceanithermus 1 genus 208447 Oceanithermus profundus 0 1 599 187137 species 2 985 0 genus 65551 Meiothermus silvanus 0 1 484 52022 species Meiothermus ruber 501 1 0 277 species genus 186191 0 2 347 Marinithermus 1 1 species 186192 346 1 0 Marinithermus hydrothermalis 270 genus 1 57 Thermus 2427 8 0 56956 species Thermus brockianus 0 1 183 species 37636 383 1 0 Thermus scotoductus species 274 0 1 706 Thermus thermophilus species 271 1 343 0 Thermus aquaticus Thermus oshimai 0 1 335 56957 species Thermus parvatiensis 0 1 210 456163 species no rank 2619321 0 210 1 1111069 species Thermus sp. CCB_US3_UF1 1 210 0 19 Tenericutes 1 0 101 29540 544448 phylum 0 1790 2 no rank 713063 species 1911684 0 640 1 Tenericutes bacterium MO-XQ species 1911683 1150 1 0 Tenericutes bacterium MZ-XQ class 31969 0 96 26693 13 Mollicutes 1 1 Mycoplasmatales 4 43 10847 0 2085 order 1 5 Mycoplasmataceae 42 10843 0 2092 family 0 12 3395 genus 2767358 species 2110 344 1 0 Mycoplasma agalactiae species 2113 0 1 54 Mycoplasma californicum species 2109 1 317 0 Mycoplasma synoviae 0 280 1 Mycoplasma arginini species 2094 0 349 1 Mycoplasma bovirhinis species 29553 Mycoplasma canis 0 258 1 29555 species species 2107 0 1 201 Mycoplasma pulmonis 1 422 0 Mycoplasma bovis species 28903 0 1 294 Mycoplasma fermentans species 2115 Mycoplasma cynos 1 322 0 171284 species 48003 species Mycoplasma pullorum 177 1 0 2112 species Mycoplasma bovigenitalium 1 377 0 0 503 2 genus 2129 0 198 1 Ureaplasma urealyticum species 2130 0 305 1 Ureaplasma parvum species 134821 genus 2093 27 6940 0 1 70 Mycoplasma 1 446 0 Mycoplasma mobile species 2118 species 86660 1 90 0 Mycoplasma dispar species 45362 0 1 179 Mycoplasma bovoculi Mycoplasma putrefaciens 0 1 575 2123 species 1 140 0 Mycoplasma pneumoniae species 2104 0 201 1 2683645 no rank 1749074 species Mycoplasma sp. (ex Biomphalaria glabrata) 201 1 0 1 81 0 Mycoplasma genitalium species 2097 0 1 45 Mycoplasma ovis species 171632 1 208 0 Mycoplasma crocodyli species 50052 species 65123 0 1 140 Mycoplasma wenyonii Mycoplasma haemofelis 1 31 0 29501 species species group 656088 0 2215 3 0 397 1 Mycoplasma leachii species 2105 species 2102 907 1 0 Mycoplasma mycoides 0 1 911 Mycoplasma capricolum species 2095 984991 species Mycoplasma parvum 1 96 0 2098 species Mycoplasma hominis 0 392 1 species 51365 1 265 0 Mycoplasma yeatsii 2096 species Mycoplasma gallisepticum 384 1 0 Mycoplasma arthritidis 0 1 218 2111 species 136241 species Mycoplasma haemocanis 0 19 1 1 100 0 Mycoplasma canadense species 29554 0 222 1 Mycoplasma hyopneumoniae species 2099 Mycoplasma suis 0 1 54 57372 species Mycoplasma hyorhinis 0 1 369 2100 species Mycoplasma penetrans 0 298 1 28227 species 2128 species Mycoplasma flocculare 102 1 0 0 2949 13 Acholeplasmatales 2 1 order 186329 5 Acholeplasmataceae 1 0 2947 12 2146 family 0 2367 5 7 Acholeplasma 1 genus 2147 species 61635 0 1 458 Acholeplasma brassicae Acholeplasma palmae 0 911 1 38986 species Acholeplasma oculi 1 407 0 35623 species 1 584 0 Acholeplasma laidlawii species 2148 33926 genus 4 Candidatus Phytoplasma 1 0 6 575 species group 85620 0 3 218 0 1 92 Maize bushy stunt phytoplasma species 202462 species 229545 1 42 0 Aster yellows witches'-broom phytoplasma Onion yellows phytoplasma 1 84 0 100379 species species group 85632 0 268 1 Candidatus Phytoplasma australiense 1 268 0 59748 species 0 1 85 species group 85630 species 37692 85 1 0 Candidatus Phytoplasma mali order 186328 0 39 12884 16 Entomoplasmatales 1 24 8484 0 1 44 Spiroplasmataceae family 2131 0 23 8440 Spiroplasma 50 1 genus 2132 216946 species Spiroplasma turonicum 0 387 1 species 216937 1 553 0 Spiroplasma floricola Spiroplasma chrysopicola 0 301 1 216933 species species 315358 1 325 0 Spiroplasma eriocheiris 216945 species Spiroplasma syrphidicola 0 1 342 1 578 0 Spiroplasma helicoides species 216938 2136 species Spiroplasma monobiae 0 1 183 2 1074 0 2637901 no rank species 1914410 0 1 537 Spiroplasma sp. NBRC 100390 1898044 species Spiroplasma sp. TU-14 537 1 0 Spiroplasma culicicola 0 356 1 216935 species 2145 species Spiroplasma taiwanense 0 336 1 0 1 128 Spiroplasma diminutum species 216936 Spiroplasma clarkii 0 1 323 2139 species species 2133 1 298 0 Spiroplasma citri 349 1 0 Spiroplasma sabaudiense species 216944 0 398 1 Spiroplasma corruscae species 216934 species 2137 0 473 1 Spiroplasma apis species 1114980 424 1 0 Spiroplasma atrichopogonis 245 1 0 Spiroplasma kunkelii species 47834 Spiroplasma litorale 0 374 1 216942 species 362837 species Spiroplasma cantharicola 0 523 1 1 420 0 Spiroplasma mirum species 2144 1 11 Entomoplasmataceae 14 4384 0 33925 family 1 Entomoplasma 3 1018 5 0 46238 genus 1 146 0 Entomoplasma freundtii species 74700 species 81459 290 1 0 Entomoplasma melaleucae 0 1 194 Entomoplasma luminosum species 214888 215578 species Entomoplasma somnilux 0 385 1 genus 46239 0 8 3355 Mesoplasma 72 1 species 2151 1 1327 0 Mesoplasma florum 225999 species Mesoplasma syrphidae 1 340 0 Mesoplasma chauliocola 350 1 0 216427 species 138853 species Mesoplasma lactucae 1 535 0 324078 species Mesoplasma coleopterae 415 1 0 Mesoplasma tabanidae 1 172 0 219745 species Mesoplasma entomophilum 0 144 1 2149 species 0 2 1038 no rank 2799557 genus 1912503 2 1038 0 1 Candidatus Izimaplasma 4 1 1034 0 no rank 2624196 1541959 species Candidatus Izimaplasma sp. HR1 1 1034 0 42 7779 0 1 Chloroflexi 7 phylum 200795 32061 class Chloroflexia 4 1 0 1400 11 order 32064 0 10 1396 8 Chloroflexales 1 616 5 0 1508594 suborder 0 616 5 Chloroflexaceae 4 1 family 1106 1107 genus 18 Chloroflexus 1 0 4 612 Chloroflexus aurantiacus 198 1 0 395 2 1108 species 197 1 0 Chloroflexus sp. Y-400-fl strain 480224 152260 species Chloroflexus aggregans 0 1 199 0 772 4 suborder 1508595 1 6 Roseiflexaceae 4 772 0 1508635 family genus 120961 766 3 0 1 Roseiflexus 2 species 120962 0 379 1 Roseiflexus castenholzii 2609473 no rank 0 385 1 species 357808 385 1 0 Roseiflexus sp. RS-1 871 5 0 1 Ardenticatenia 14 class 1382928 order 1382929 857 4 0 1 12 Ardenticatenales 1382930 family 1 Ardenticatenaceae 1 0 845 3 1988031 genus 8 Candidatus Promineofilum 1 0 844 2 Candidatus Promineofilum breve 0 836 1 1806508 species 301297 class 5 Dehalococcoidia 1 0 7 2255 0 2 628 genus 670486 species 552810 0 364 1 Dehalogenimonas lykanthroporepellens species 1839801 264 1 0 Dehalogenimonas formicexedens order 1202465 0 4 1622 1202464 family Dehalococcoidaceae 2 1 0 1622 4 Dehalococcoides 2 1 0 3 1620 61434 genus 0 1 1135 Dehalococcoides mccartyi species 61435 no rank 237581 0 1 483 1522671 species Dehalococcoides sp. UCH007 0 483 1 292625 class Anaerolineae 2 1 0 7 1933 order 292629 6 1931 0 1 Anaerolineales 3 family 292628 5 1928 0 1 Anaerolineaceae 6 2019482 genus 0 217 1 1986204 species Brevefilum fermentans 217 1 0 233189 genus 1 Anaerolinea 1 0 791 2 Anaerolinea thermophila 1 790 0 167964 species 1324991 no rank 1 914 0 0 914 1 Anaerolineaceae bacterium oral taxon 439 species 1889813 Caldilineae 1 1 0 773 4 475962 class order 475963 3 772 0 1 1 Caldilineales 0 2 771 Caldilineaceae 3 1 family 475964 0 768 1 genus 233191 133453 species Caldilinea aerophila 0 768 1 189775 class 1 3 Thermomicrobia 540 7 0 order 189776 146 2 0 1 2 Thermomicrobiales family 189777 0 144 1 144 1 0 499 genus 500 species Thermomicrobium roseum 0 1 144 subclass 85000 391 4 0 1 Sphaerobacterales 6 391 4 0 85001 order 385 3 0 suborder 255728 85002 family 3 Sphaerobacteraceae 1 0 385 3 genus 2056 0 2 382 5 Sphaerobacter 1 2057 species Sphaerobacter thermophilus 377 1 0 phylum 1239 0 2426581 706 Firmicutes 86 1 1269 1 0 no rank 84086 species 243899 0 1269 1 endosymbiont 'TC1' of Trimyema compressum 0 637 2 no rank 33974 Ndongobacter 3 1 0 637 2 1930845 genus Ndongobacter massiliensis 1 634 0 1871025 species 289 Bacilli 1 0 427 455078 91061 class order 186826 0 191173 163 1516 Lactobacillales 1 8 3298 0 1 Aerococcaceae 5 family 186827 1375 genus 1 Aerococcus 28 3293 7 0 1 597 0 Aerococcus urinae species 1376 119206 species Aerococcus sanguinicola 485 1 0 87541 species Aerococcus christensenii 413 1 0 51665 species Aerococcus urinaeequi 1 684 0 Aerococcus viridans 1 605 0 1377 species Aerococcus urinaehominis 481 1 0 128944 species 1 4 Carnobacteriaceae 6679 11 0 186828 family 0 836 2 Marinilactibacillus 1 1 genus 191769 2632303 no rank 835 1 0 Marinilactibacillus sp. 15R 1 835 0 1911586 species genus 1470540 0 3 1419 Jeotgalibaca 1 1 Jeotgalibaca dankookensis 0 1 719 708126 species 0 699 1 2621505 no rank 1903686 species Jeotgalibaca sp. PTS2502 0 699 1 genus 2747 0 5 4420 13 Carnobacterium 1 species 147709 0 787 1 Carnobacterium inhibens 2266 2 0 no rank 257487 Carnobacterium sp. 17-4 0 1 1811 208596 species Carnobacterium sp. CP1 0 455 1 1564681 species species 2751 1354 1 0 Carnobacterium maltaromaticum 0 95875 49 Streptococcaceae 541 1 family 1300 genus 1357 5 7353 0 1 6 Lactococcus species 1364 0 583 1 Lactococcus piscium 0 1 4899 Lactococcus lactis species 1358 Lactococcus raffinolactis 0 1 863 1366 species 1363 species Lactococcus garvieae 0 1 1002 genus 1301 43 87981 0 1 Streptococcus 2392 species 1314 1850 1 0 Streptococcus pyogenes 1888195 species Streptococcus himalayensis 0 329 1 species 315405 0 1 2429 Streptococcus gallolyticus 1669 1 0 Streptococcus lutetiensis species 150055 0 1 1214 Streptococcus pneumoniae species 1313 1302 species Streptococcus gordonii 0 3183 1 0 1 1007 Streptococcus pantholopis species 1811193 species 1304 0 5739 1 Streptococcus salivarius 1 972 0 Streptococcus pluranimalium species 82348 2 2540 0 119603 species group species 1334 837 1 0 Streptococcus dysgalactiae species 1336 0 1703 1 Streptococcus equi Streptococcus infantarius 2025 1 0 102684 species 1 1150 0 Streptococcus thermophilus species 1308 45634 species Streptococcus cristatus 1 498 0 28037 species Streptococcus mitis 0 2568 1 1348 species Streptococcus parauberis 0 1 1284 197614 species Streptococcus pasteurianus 0 1 1491 Streptococcus sanguinis 0 1 861 1305 species species 1349 1014 1 0 Streptococcus uberis Streptococcus macedonicus 0 1 733 59310 species species 1311 1 5518 0 Streptococcus agalactiae Streptococcus halotolerans 0 1 974 1814128 species 0 6433 1 Streptococcus suis species 1307 1303 species Streptococcus oralis 2837 1 0 Streptococcus iniae 0 1 2215 1346 species 1309 species Streptococcus mutans 1205 1 0 0 7 16028 2608887 no rank 1839799 species Streptococcus sp. FDAARGOS_192 1145 1 0 1 1944 0 Streptococcus sp. A12 species 1759399 species 712633 973 1 0 Streptococcus sp. oral taxon 431 Streptococcus sp. 'group B' 1 727 0 1319 species Streptococcus sp. NPS 308 777 1 0 1902136 species species 1156433 1 5397 0 Streptococcus sp. I-P16 species 1156431 1 5065 0 Streptococcus sp. I-G2 Streptococcus equinus 1 1205 0 1335 species Streptococcus pseudopneumoniae 538 1 0 257758 species 1 1238 0 Streptococcus acidominimus species 1326 3 12688 0 species group 671232 Streptococcus intermedius 0 1341 1 1338 species species 76860 0 1 3722 Streptococcus constellatus 1328 species Streptococcus anginosus 7625 1 0 1825069 species Streptococcus marmotae 1 367 0 Streptococcus merionis 977 1 0 400065 species species 1318 0 810 1 Streptococcus parasanguinis 263855 no rank 1075 1 0 0 1075 1 Lactobacillales bacterium species 1993866 81852 family 1 Enterococcaceae 31 27073 19 0 51668 genus 1 1 Tetragenococcus 2324 2 0 51669 species Tetragenococcus halophilus 0 1 2323 genus 33969 1061 1 0 Melissococcus plutonius 1 1061 0 33970 species 2737 genus 1 Vagococcus 3 3 1999 0 633807 species Vagococcus penaei 1180 1 0 Vagococcus teuberi 0 816 1 519472 species 448 Enterococcus 1 0 12 21658 1350 genus species 417368 1082 1 0 Enterococcus thailandicus 1354 species Enterococcus hirae 1 989 0 no rank 2608891 0 3 1259 2057791 species Enterococcus sp. CR-Ec1 0 330 1 species 2060306 1 275 0 Enterococcus sp. FDAARGOS_163 2060307 species Enterococcus sp. FDAARGOS_375 654 1 0 Enterococcus casseliflavus 0 594 1 37734 species species 53345 0 1 1414 Enterococcus durans species 2005703 1 1216 0 Enterococcus wangshanyuanii 1589 1 0 Enterococcus mundtii species 53346 1 6192 0 Enterococcus faecium species 1352 1351 species Enterococcus faecalis 0 6875 1 33958 family 1 60 Lactobacillaceae 47606 58 0 0 614 1 2767876 genus 1603 species Lactobacillus amylophilus 1 614 0 0 868 1 genus 2767890 1193095 species Lactobacillus hokkaidonensis 0 868 1 2767885 genus 0 2 1416 0 1 993 Lactobacillus sakei species 1599 species 28038 423 1 0 Lactobacillus curvatus 0 6 5596 genus 2767879 species 1007676 811 1 0 Lactobacillus ginsenosidimutans 724 1 0 Lactobacillus heilongjiangensis species 1074467 1372 1 0 Lactobacillus allii species 1847728 Lactobacillus alimentarius 0 1 995 1602 species species 1612 601 1 0 Lactobacillus farciminis species 392416 1 1093 0 Lactobacillus crustorum 0 1935 3 genus 2742598 1598 species Lactobacillus reuteri 0 1022 1 1613 species Lactobacillus fermentum 287 1 0 626 1 0 Lactobacillus mucosae species 97478 0 2397 3 genus 2767893 species 1581 0 540 1 Lactobacillus buchneri species 152331 0 1082 1 Lactobacillus parabuchneri species 1138822 0 775 1 Lactobacillus curieae 1 6 Pediococcus 3539 6 0 1253 genus 114090 species Pediococcus inopinatus 454 1 0 0 1278 1 Pediococcus pentosaceus species 1255 1 902 0 species group 1670797 species 1254 902 1 0 Pediococcus acidilactici species 187452 323 1 0 Pediococcus claussenii 0 1 576 Pediococcus damnosus species 51663 0 2 813 genus 2767881 Lactobacillus lindneri 0 1 318 53444 species species 1625 0 1 495 Lactobacillus sanfranciscensis 0 6192 4 2767887 genus Lactobacillus salivarius 1 4369 0 1624 species 1623 species Lactobacillus ruminis 0 948 1 species 89059 377 1 0 Lactobacillus acidipiscis 0 1 498 Lactobacillus agilis species 1601 2 1269 0 2767889 genus 1610 species Lactobacillus coryniformis 0 588 1 0 1 681 Lactobacillus backii species 375175 Lactobacillus 407 1 0 16062 16 1578 genus 33959 species Lactobacillus johnsonii 2839 1 0 species 1584 873 1 0 Lactobacillus delbrueckii 0 3027 4 no rank 2620435 2099789 species Lactobacillus sp. CBA3606 496 1 0 species 2099788 0 1 1586 Lactobacillus sp. CBA3605 species 1545702 657 1 0 Lactobacillus sp. wkB8 Lactobacillus sp. D1501 288 1 0 2108362 species species 1587 1363 1 0 Lactobacillus helveticus Lactobacillus gasseri 0 1676 1 1596 species 0 1 337 Lactobacillus amylolyticus species 83683 species 109790 1 804 0 Lactobacillus jensenii species 52242 0 1 575 Lactobacillus gallinarum species 1579 1587 1 0 Lactobacillus acidophilus species 1604 1 1454 0 Lactobacillus amylovorus 1 446 0 Lactobacillus acetotolerans species 1600 674 1 0 Lactobacillus kefiranofaciens species 267818 2767892 genus 1 322 0 species 240427 0 322 1 Lactobacillus paracollinoides genus 2767842 2408 3 0 1590 species Lactobacillus plantarum 1420 1 0 60520 species Lactobacillus paraplantarum 0 326 1 0 1 662 Lactobacillus pentosus species 1589 0 1122 3 2767886 genus 267363 species Lactobacillus zymae 246 1 0 637971 species Lactobacillus koreensis 0 1 181 Lactobacillus brevis 0 1 695 1580 species genus 2759736 2741 3 0 species 1582 1230 1 0 Lactobacillus casei 1597 species Lactobacillus paracasei 0 578 1 Lactobacillus rhamnosus 0 1 933 47715 species 2767877 genus 0 252 1 Lactobacillus kunkeei 252 1 0 148814 species 8051 16 0 81850 family 46254 genus 0 1 1008 Oenococcus oeni 1 1008 0 1247 species genus 1243 5034 9 0 1 10 Leuconostoc Leuconostoc citreum 412 1 0 33964 species 0 1024 1 Leuconostoc gelidum species 1244 136609 species Leuconostoc kimchii 0 1 678 1245 species Leuconostoc mesenteroides 0 1 697 no rank 2685106 0 452 1 979982 species Leuconostoc sp. C2 0 1 452 Leuconostoc lactis 1 754 0 1246 species 255248 species Leuconostoc garlicum 0 1 246 species 1252 0 761 1 Leuconostoc carnosum 4 Weissella 1 0 2009 6 46255 genus 1249 species Weissella paramesenteroides 1 301 0 species 165096 0 614 1 Weissella koreensis species 137591 0 1 287 Weissella cibaria 1631871 species Weissella jogaejeotgali 1 508 0 0 1 295 Weissella ceti species 759620 1 323 Bacillales 263616 263 0 1385 order 186817 family 284 Bacillaceae 1 0 128591 118 400634 genus 1 10 Lysinibacillus 5 9019 0 no rank 2636778 0 1 1469 Lysinibacillus sp. YS11 0 1469 1 2072025 species Lysinibacillus varians 0 2074 1 1145276 species Lysinibacillus fusiformis 1367 1 0 28031 species 1 4099 0 Lysinibacillus sphaericus species 1421 598 2 0 1 Lentibacillus 1 genus 175304 Lentibacillus amyloliquefaciens 0 1 597 1472767 species 0 1150 3 Halobacillus 1 1 genus 45667 619 1 0 Halobacillus halophilus species 1570 species 402384 0 1 530 Halobacillus mangrovi 5 6156 0 2675234 genus species 300825 0 1502 1 Bacillus lehensis Bacillus halodurans 1 891 0 86665 species species 79880 1 1027 0 Bacillus clausii 1384 1 0 Bacillus krulwichiae species 199441 1352 1 0 Bacillus pseudofirmus species 79885 4 Aeribacillus 1 0 717 2 1055323 genus 0 1 713 Aeribacillus pallidus species 33936 genus 129337 0 6382 15 761 Geobacillus 1 species 129338 0 297 1 Geobacillus subterraneus species 33940 0 794 1 Geobacillus thermodenitrificans species 1422 1 433 0 Geobacillus stearothermophilus 6 1832 0 2642459 no rank 581103 species Geobacillus sp. Y4.1MC1 1 689 0 Geobacillus sp. C56-T3 1 202 0 691437 species 1 193 0 Geobacillus sp. GHH01 species 1233873 species 550542 0 107 1 Geobacillus sp. Y412MC52 1 471 0 Geobacillus sp. WCH70 species 471223 species 544556 170 1 0 Geobacillus sp. Y412MC61 4 1888 0 1505648 species group Geobacillus thermocatenulatus 0 222 1 33938 species 1 245 0 Geobacillus kaustophilus species 1462 169283 species Geobacillus lituanicus 0 369 1 Geobacillus thermoleovorans 1052 1 0 33941 species 0 377 1 Geobacillus genomosp. 3 species 1921421 1 1882 0 182709 genus 0 1882 1 Oceanobacillus iheyensis species 182710 0 4088 5 genus 150247 0 751 1 Anoxybacillus amylolyticus species 294699 species 198467 0 1 509 Anoxybacillus gonensis species 33934 1301 1 0 Anoxybacillus flavithermus 2639704 no rank 0 2 1527 Anoxybacillus sp. B7M1 1 704 0 1490057 species 1 823 0 Anoxybacillus sp. B2M1 species 1490052 0 78274 58 1710 Bacillus 1 genus 1386 Bacillus weihaiensis 1191 1 0 1547283 species species 135735 2922 1 0 Bacillus endophyticus 185979 no rank 19 9587 0 1 586 0 Bacillus sp. 1s-1 species 2026248 species 1628753 103 1 0 Bacillus sp. LM 4-2 Bacillus sp. SDLI1 0 1 394 1774743 species Bacillus sp. JS 0 1 210 1127744 species 0 148 1 Bacillus sp. (in: Bacteria) species 1409 112 1 0 Bacillus sp. BH072 species 1570330 Bacillus sp. 1NLA3E 0 1 1134 666686 species 0 1 114 Bacillus sp. Lzh-5 species 2049935 Bacillus sp. 275 196 1 0 1941347 species 224 1 0 Bacillus sp. SJ-10 species 563169 Bacillus sp. Pc3 196 1 0 1446792 species 1837130 species Bacillus sp. FJAT-14266 0 733 1 1 147 0 Bacillus sp. MD-5 species 2009331 Bacillus sp. H15-1 1 586 0 1856406 species Bacillus sp. X1(2014) 0 1 2024 1565991 species 108 1 0 Bacillus sp. YP1 species 1574141 Bacillus sp. WP8 0 978 1 756828 species 1 1207 0 Bacillus sp. IHB B 7164 species 1827146 Bacillus sp. OxB-1 387 1 0 98228 species 1479 species Bacillus smithii 542 1 0 280 1 0 Bacillus gibsonii species 79881 0 1 1899 Bacillus coagulans species 1398 species group 653685 9 9676 0 species 1423 3267 1 0 Bacillus subtilis Bacillus paralicheniformis 1 765 0 1648923 species 63 1 0 Bacillus vallismortis species 72361 1452 species Bacillus atrophaeus 0 1 1167 Bacillus sonorensis 686 1 0 119858 species 1938374 species subgroup 3 2792 0 0 1443 1 Bacillus amyloliquefaciens species 1390 659243 species Bacillus siamensis 0 314 1 1035 1 0 Bacillus velezensis species 492670 Bacillus licheniformis 0 1 936 1402 species 1 1297 0 Bacillus flexus species 86664 0 1300 1 Bacillus cohnii species 33932 0 1 977 1792192 species group 293387 species Bacillus altitudinis 977 1 0 species 1664069 0 1 679 Bacillus glycinifermentans 1413 species Bacillus cellulosilyticus 1 717 0 561879 species Bacillus safensis 0 1806 1 species 1408 0 1 4844 Bacillus pumilus species 1178537 930 1 0 Bacillus xiamenensis species 324767 0 988 1 Bacillus infantis Bacillus methanolicus 940 1 0 1471 species species 1404 0 1 3576 Bacillus megaterium Bacillus aryabhattai 948 1 0 412384 species species 79883 1 923 0 Bacillus horikoshii 632773 species Bacillus beveridgei 0 336 1 10 30206 0 86661 species group 0 1082 1 Bacillus toyonensis species 155322 1428 species Bacillus thuringiensis 0 1 8728 Bacillus cereus 10358 1 0 1396 species 1 992 0 Bacillus bombysepticus species 658666 2750818 no rank 0 3 2927 Bacillus sp. ABP14 1 958 0 1892404 species species 1839798 1189 1 0 Bacillus sp. FDAARGOS_235 Bacillus sp. HBCD-sjtu 0 1 780 2053832 species 0 1150 1 Bacillus anthracis species 1392 species 1405 1 4168 0 Bacillus mycoides 1 801 0 Bacillus cytotoxicus species 580165 0 2 2763 genus 2675230 Bacillus oceanisediminis 0 1433 1 665099 species Bacillus kochii 0 1 1330 859143 species 737 2 0 1 Parageobacillus 5 genus 1906945 0 1 732 Parageobacillus thermoglucosidasius species 1426 0 2853 2 genus 2675229 Bacillus muralis 1 668 0 264697 species 1 2185 0 Bacillus simplex species 1478 1 Fictibacillus 1 3322 3 0 1329200 genus Fictibacillus phosphorivorans 0 1187 1 1221500 species species 255247 0 2134 1 Fictibacillus arsenicus 7 7885 0 1 53 Virgibacillus genus 84406 1482 species Virgibacillus halodenitrificans 1 1311 0 Virgibacillus necropolis 1 1664 0 163877 species species 1473 0 1 1386 Virgibacillus pantothenticus no rank 2620237 2 2722 0 0 1 1748 Virgibacillus sp. 6R species 1911587 species 403957 0 974 1 Virgibacillus sp. SK37 749 1 0 Virgibacillus phasianinus species 2017483 29331 genus Amphibacillus 1 1 0 2 1260 1449 species Amphibacillus xylanus 1 1259 0 1 Terribacillus 2 713 2 0 459532 genus 1 711 0 Terribacillus aidingensis species 586416 508 1 0 351195 genus species 1230341 0 1 508 Salimicrobium jeotgali 186823 family 1 Alicyclobacillaceae 11 3583 9 0 genus 1129704 0 911 3 Kyrpidia 16 1 Kyrpidia tusciae 473 1 0 33943 species 1 422 0 Kyrpidia sp. EA-1 species 2055160 0 2 926 Alicyclobacillus 18 1 genus 29330 405212 species Alicyclobacillus acidocaldarius 908 1 0 3 1735 0 1 Tumebacillus 3 genus 432330 1903704 species Tumebacillus avium 1122 1 0 0 1 610 Tumebacillus algifaecis species 1214604 0 4001 9 539002 no rank 539738 no rank 2 953 0 1378 genus 1 Gemella 14 2 953 0 2624949 no rank 1 939 0 0 1 939 Gemella sp. oral taxon 928 species 1785995 3048 7 0 539742 no rank 33986 genus 1 18 Exiguobacterium 3048 7 0 Exiguobacterium antarcticum 1 702 0 132920 species 2644629 no rank 0 1869 4 Exiguobacterium sp. ZWU0009 1 601 0 1224749 species Exiguobacterium sp. U13-1 0 1 682 1849031 species 1399115 species Exiguobacterium sp. MH3 1 414 0 species 360911 0 172 1 Exiguobacterium sp. AT1b species 332410 0 1 459 Exiguobacterium sibiricum 0 616 2 3 Sporolactobacillaceae 1 family 186821 no rank 663587 613 1 0 85683 species [Bacillus] selenitireducens 1 613 0 family 186820 0 12383 8 Listeriaceae 78 1 1637 genus 1 Listeria 56 11283 6 0 species 1643 1 1219 0 Listeria welshimeri 1989 1 0 Listeria innocua species 1642 species 1639 4738 1 0 Listeria monocytogenes 0 1 1455 Listeria seeligeri species 1640 species 1638 1826 1 0 Listeria ivanovii genus 2755 0 1 1022 2756 species Brochothrix thermosphacta 0 1 1022 1 Planococcaceae 14 25 17305 0 186818 family 18 Solibacillus 1 0 3073 3 648800 genus 1 1109 0 no rank 2637870 0 1109 1 Solibacillus sp. R5-41 species 2048654 1 1946 0 Solibacillus silvestris species 76853 0 1 1071 genus 648802 Rummeliibacillus stabekisii 1071 1 0 241244 species 0 5 4351 12 Sporosarcina 1 genus 1569 0 2488 1 Sporosarcina ureae species 1571 2647733 no rank 2 1063 0 Sporosarcina sp. P33 0 1 593 1930764 species 1930546 species Sporosarcina sp. P37 0 1 470 species 1476 788 1 0 Sporosarcina psychrophila 2 1398 0 1 3 Jeotgalibacillus genus 157226 Jeotgalibacillus malaysiensis 0 1395 1 1508404 species 0 1 1260 1649 genus 1260 1 0 2644826 no rank Kurthia sp. 11kri321 1 1260 0 1750719 species 1372 genus 1 45 Planococcus 12 6138 0 no rank 2662419 0 840 2 2058136 species Planococcus sp. MB-3u-03 1 340 0 1526927 species Planococcus sp. PAMC 21323 0 500 1 1302659 species Planococcus sp. L10.15 0 1 748 1 385 0 Planococcus rifietoensis species 200991 Planococcus faecalis 1 778 0 1598147 species 414778 species Planococcus donghaensis 0 1 613 species 1374 0 1 599 Planococcus kocurii Planococcus maritimus 1 843 0 192421 species 0 1 424 Planococcus antarcticus species 161360 species 1038856 0 413 1 Planococcus plakortidis 0 450 1 Planococcus halocryophilus species 1215089 4 347 0 1 1 Thermoactinomycetaceae family 186824 genus 292635 0 16 1 Laceyella 1 Novibacillus 15 2 330 0 1677050 genus species 1471761 0 1 315 Novibacillus thermophilus 186822 family 155 Paenibacillaceae 1 0 48950 46 1963 3 0 no rank 85151 genus 55079 0 3 1963 Aneurinibacillus 3 1 2642329 no rank 726 1 0 726 1 0 Aneurinibacillus sp. XH2 species 1450761 0 1234 1 Aneurinibacillus soli species 1500254 genus 55080 0 4948 4 20 Brevibacillus 1 1 2727 0 Brevibacillus laterosporus species 1465 species 54913 0 1 1016 Brevibacillus formosus species 1393 0 1185 1 Brevibacillus brevis genus 44249 0 36 40966 887 Paenibacillus 1 0 974 1 Paenibacillus donghaensis species 414771 1462996 species Paenibacillus yonginensis 0 862 1 Paenibacillus polymyxa 0 2549 1 1406 species 2069 1 0 species group 2044880 Paenibacillus riograndensis 0 1 2069 483937 species species 189426 844 1 0 Paenibacillus odorifer 44251 species Paenibacillus durus 0 1984 1 1 872 0 Paenibacillus terrae species 159743 Paenibacillus xylanexedens 1 1246 0 528191 species 1 829 0 Paenibacillus sabinae species 365617 Paenibacillus peoriae 0 1 775 59893 species Paenibacillus mucilaginosus 1326 1 0 61624 species 162209 species Paenibacillus naphthalenovorans 1 907 0 Paenibacillus beijingensis 693 1 0 1126833 species species 1763538 0 1405 1 Paenibacillus crassostreae 13 14196 0 no rank 185978 species 1536770 0 911 1 Paenibacillus sp. FSL R5-0345 0 1 1343 Paenibacillus sp. JDR-2 species 324057 1008 1 0 Paenibacillus sp. FSL H7-0357 species 1536774 1536775 species Paenibacillus sp. FSL H7-0737 1 905 0 1536773 species Paenibacillus sp. FSL R7-0331 0 817 1 1 1211 0 Paenibacillus sp. FSL P4-0081 species 1536769 species 1536771 1790 1 0 Paenibacillus sp. FSL R5-0912 species 2069255 836 1 0 Paenibacillus sp. lzh-N1 Paenibacillus sp. IHBB 10380 0 1 1500 1566358 species 1536772 species Paenibacillus sp. FSL R7-0273 0 1 1224 species 481743 1 938 0 Paenibacillus sp. Y412MC10 Paenibacillus sp. BIHB4019 1105 1 0 1870819 species 1695218 species Paenibacillus sp. 32O-W 0 1 608 species 1616788 0 1 890 Paenibacillus bovis 189425 species Paenibacillus graminis 1 1794 0 1870820 species Paenibacillus ihbetae 0 740 1 Paenibacillus kribbensis 1 852 0 172713 species species 160799 1531 1 0 Paenibacillus borealis species 1464 1 1353 0 Paenibacillus larvae species 1178515 0 446 1 Paenibacillus swuensis 0 942 1 Paenibacillus stellifer species 169760 0 2 918 Thermobacillus 10 1 genus 76632 species 377615 0 1 908 Thermobacillus composti family 90964 41 47517 0 1 Staphylococcaceae 480 43786 33 0 1 347 Staphylococcus genus 1279 Staphylococcus succinus 0 1 1084 61015 species 0 1 817 Staphylococcus kloosii species 29384 29382 species Staphylococcus cohnii 0 1285 1 0 1 1060 Staphylococcus hyicus species 1284 46127 species Staphylococcus felis 0 589 1 Staphylococcus pseudintermedius 0 1 947 283734 species 28035 species Staphylococcus lugdunensis 1 967 0 species 1295 0 1 806 Staphylococcus schleiferi 1282 species Staphylococcus epidermidis 2174 1 0 308354 species Staphylococcus simiae 0 1 1605 species 985002 1605 1 0 Staphylococcus argenteus 1283 species Staphylococcus haemolyticus 1 1886 0 Staphylococcus condimenti 1857 1 0 70255 species species 155085 1 687 0 Staphylococcus lutrae Staphylococcus hominis 0 865 1 1290 species species 1280 0 4836 1 Staphylococcus aureus Staphylococcus piscifermentans 0 946 1 70258 species 1 584 0 Staphylococcus pettenkoferi species 170573 0 1 1067 Staphylococcus stepanovicii species 643214 0 1 1136 Staphylococcus simulans species 1286 Staphylococcus warneri 644 1 0 1292 species Staphylococcus nepalensis 1 1140 0 214473 species species 29388 0 1 1107 Staphylococcus capitis species 1288 0 1 2260 Staphylococcus xylosus 1817 1 0 Staphylococcus equorum species 246432 species 45972 0 1 2452 Staphylococcus pasteuri 29385 species Staphylococcus saprophyticus 0 1353 1 91994 no rank 1241 1 0 species 1715860 0 1 1241 Staphylococcus sp. AntiMn-1 1 528 0 Staphylococcus muscae species 1294 Staphylococcus agnetis 503 1 0 985762 species species 1281 1 1743 0 Staphylococcus carnosus 1 1848 0 Staphylococcus sciuri species 1296 587 2 0 1 Salinicoccus 1 genus 45669 407035 species Salinicoccus halodurans 586 1 0 genus 69965 4 2298 0 1 Macrococcus 3 0 1434 1 no rank 2619255 Macrococcus sp. IME1552 1 1434 0 1898474 species Macrococcus canis 1 425 0 1855823 species species 69966 1 436 0 Macrococcus caseolyticus 0 1 366 2005363 genus 1 366 0 Auricoccus indicus species 1849491 649 5 0 1 3 Limnochordia class 1676648 4 646 0 1 3 Limnochordales order 1676649 Limnochordaceae 5 1 0 3 643 1676650 family genus 1676651 0 2 638 2 Limnochorda 1 Limnochorda pilosa 0 1 636 1555112 species class 186801 0 1178920 211 159 Clostridia 1 0 2 732 order 485256 2 732 0 485255 family 0 732 2 11 Natranaerobius 1 genus 375928 species 375929 0 721 1 Natranaerobius thermophilus 1 77 Thermoanaerobacterales 23423 37 0 68295 order 77 Thermoanaerobacterales Family III. Incertae Sedis 1 0 13 8632 543371 family genus 44000 0 9 6119 Caldicellulosiruptor 89 1 species 44001 0 835 1 Caldicellulosiruptor saccharolyticus species 413888 0 694 1 Caldicellulosiruptor hydrothermalis 717609 species Caldicellulosiruptor obsidiansis 0 711 1 Caldicellulosiruptor lactoaceticus 0 931 1 52766 species species 31899 0 708 1 Caldicellulosiruptor bescii 0 1007 1 Caldicellulosiruptor owensensis species 55205 0 528 1 Caldicellulosiruptor kronotskyensis species 413889 species 52765 0 616 1 Caldicellulosiruptor kristjanssonii 0 2436 3 Thermoanaerobacterium 4 1 genus 28895 Thermoanaerobacterium xylanolyticum 1 719 0 29329 species Thermoanaerobacterium thermosaccharolyticum 1 1713 0 1517 species 227387 family 1 Thermodesulfobiaceae 1 0 2 273 genus 227388 272 1 0 0 272 1 Thermodesulfobium narugense species 184064 543372 family 7 Thermoanaerobacterales Family IV. Incertae Sedis 1 0 528 3 genus 252965 0 521 2 1 Mahella 1 species 252966 0 1 520 Mahella australiensis family 186814 0 13913 18 9 Thermoanaerobacteraceae 1 0 983 3 no rank 42857 44260 genus 0 624 1 species 1525 1 624 0 Moorella thermoacetica 1 Ammonifex 10 359 2 0 42837 genus species 42838 0 1 349 Ammonifex degensii genus 129957 0 2 805 Carboxydothermus 1 1 Carboxydothermus hydrogenoformans 0 1 804 129958 species genus 1754 9 11142 0 1 246 Thermoanaerobacter Thermoanaerobacter kivui 0 863 1 2325 species 583357 species Thermoanaerobacter mathranii 1 960 0 Thermoanaerobacter wiegelii 1490 1 0 46354 species 0 2 3041 no rank 2636821 0 1 1612 Thermoanaerobacter sp. X514 species 399726 species 573062 1429 1 0 Thermoanaerobacter sp. X513 1 1784 0 Thermoanaerobacter pseudethanolicus species 496866 species 29323 1784 1 0 Thermoanaerobacter brockii 0 974 1 Thermoanaerobacter italicus species 108150 genus 249529 507 2 0 1 1 Caldanaerobacter 0 506 1 Caldanaerobacter subterraneus species 911092 467 1 0 140458 genus Thermacetogenium phaeum 467 1 0 85874 species 0 6311 10 Halanaerobiales 1 1 order 53433 2866 4 0 1 Halobacteroidaceae 5 family 53434 1 566 0 genus 28186 species 28187 0 566 1 Acetohalobium arabaticum 0 2295 2 Halobacteroides 1 1 genus 42417 Halobacteroides halobius 0 1 2294 42422 species family 972 0 3444 5 1 Halanaerobiaceae 1 32636 genus Halothermothrix 3 1 0 2 487 Halothermothrix orenii 484 1 0 31909 species 2330 genus 0 2956 2 species 656519 0 1 852 Halanaerobium hydrogeniformans Halanaerobium praevalens 2104 1 0 2331 species order 186802 158 1146895 0 1 2109 Clostridiales 186803 family 1 Lachnospiraceae 501 27 318868 0 698776 genus 2 Cellulosilyticum 1 0 2 3839 species 29360 0 3837 1 Cellulosilyticum lentocellum 2569097 genus 1 27177 0 39488 species [Eubacterium] hallii 1 27177 0 1 55 Lachnoclostridium 28790 4 0 1506553 genus 0 1 12771 2608895 no rank Lachnoclostridium sp. YL32 0 1 12771 1834196 species 1871021 species Lachnoclostridium phocaeense 0 11965 1 species 66219 0 3999 1 Lachnoclostridium phytofermentans 2 Anaerotignum 1 0 2 2523 2039240 genus 1 2521 0 Anaerotignum propionicum species 28446 0 1 48434 genus 2719313 species 208479 1 48434 0 [Clostridium] bolteae genus 207244 0 2 18330 76 Anaerostipes 1 species 649756 1 18254 0 Anaerostipes hadrus 1663717 genus Herbinix 2 1 0 1934 2 species 1679721 0 1 1932 Herbinix luporum 0 3 27133 13 Blautia 1 genus 572511 2648079 no rank 0 1 10700 1796616 species Blautia sp. YL58 0 10700 1 1322 species Blautia hansenii 16420 1 0 genus 841 0 2 82719 Roseburia 5 1 species 301301 0 82714 1 Roseburia hominis genus 2719231 7962 1 0 species 84030 1 7962 0 [Clostridium] saccharolyticum no rank 186928 47336 2 0 species 712991 1 4680 0 Lachnospiraceae bacterium oral taxon 500 39491 species [Eubacterium] rectale 42656 1 0 0 14259 1 28050 genus [Eubacterium] eligens 14259 1 0 39485 species genus 830 7931 3 0 1 10 Butyrivibrio 1 3384 0 Butyrivibrio hungatei species 185008 species 43305 0 4537 1 Butyrivibrio proteoclasticus family 31979 137338 41 0 1 138 Clostridiaceae Mordavella 0 50 1 1981033 genus 114627 genus 1 2 Alkaliphilus 1846 3 0 species 461876 0 1 749 Alkaliphilus oremlandii Alkaliphilus metalliredigens 1095 1 0 208226 species 49082 genus 1 12 Candidatus Arthromitus 4 2247 0 no rank 2638829 0 3 2235 49118 species Candidatus Arthromitus sp. SFB-mouse 0 555 1 species 1041504 0 1 1185 Candidatus Arthromitus sp. SFB-rat-Yit 1 495 0 Candidatus Arthromitus sp. SFB-mouse-NL species 1508644 0 30 130675 Clostridium 205 1 genus 1485 238834 species Clostridium estertheticum 1 2711 0 species 1542 1 2517 0 Clostridium novyi species 1561 4880 1 0 Clostridium baratii 217159 species Clostridium carboxidivorans 3483 1 0 0 2319 1 Clostridium autoethanogenum species 84023 1 5943 0 Clostridium pasteurianum species 1501 Clostridium bornimense 2388 1 0 1216932 species 1 8490 0 Clostridium beijerinckii species 1520 Clostridium ljungdahlii 0 1 2063 1538 species 1492 species Clostridium butyricum 6226 1 0 species 394958 3524 1 0 Clostridium taeniosporum 0 1 4018 Clostridium saccharobutylicum species 169679 species 1519 1768 1 0 Clostridium tyrobutyricum 1491 species Clostridium botulinum 21157 1 0 1488 species Clostridium acetobutylicum 0 1 1598 Clostridium perfringens 0 14853 1 1502 species 29341 species Clostridium argentinense 2762 1 0 Clostridium cochlearium 0 1 2090 1494 species Clostridium aceticum 1 1338 0 84022 species species 1509 0 2845 1 Clostridium sporogenes species 46867 1 2442 0 Clostridium chauvoei species 1513 5188 1 0 Clostridium tetani species 1493 0 1 3506 Clostridium cellulovorans species 1534 4033 1 0 Clostridium kluyveri 1 1627 0 Clostridium formicaceticum species 1497 Clostridium saccharoperbutylacetonicum 0 1 6056 36745 species 7202 2 0 no rank 2614128 1 1841 0 Clostridium sp. BNL1100 species 755731 Clostridium sp. SY8519 0 1 5361 1042156 species Clostridium scatologenes 0 1 3443 1548 species 1 Geosporobacter 6 2 2382 0 390805 genus Geosporobacter ferrireducens 0 1 2376 1424294 species 1 4 Oscillospiraceae 14593 3 0 216572 family Oscillibacter 39 1 0 14589 2 459786 genus species 351091 1 14550 0 Oscillibacter valericigenes 31984 family 1 7 Heliobacteriaceae 3 1355 0 genus 2697 0 1348 2 11 Heliobacterium 1 35701 species Heliobacterium modesticaldum 1337 1 0 7320 4 0 1 Eubacteriaceae 19 family 186806 66 Eubacterium 1 0 2 6061 1730 genus 1736 species Eubacterium limosum 0 5995 1 0 1240 1 33951 genus species 33952 0 1240 1 Acetobacterium woodii family 186804 10 27018 0 1 Peptostreptococcaceae 137 1481960 genus 1024 1 0 Peptoclostridium acidaminophilum 0 1024 1 1731 species 0 2934 1 genus 1849828 1505 species Paeniclostridium sordellii 0 2934 1 0 2 19799 94 Clostridioides 1 genus 1870884 species 1496 0 1 19705 Clostridioides difficile genus 44259 741 2 0 1 Filifactor 3 143361 species Filifactor alocis 738 1 0 1 2 Acetoanaerobium 1803 2 0 186831 genus 1 1801 0 Acetoanaerobium sticklandii species 1511 0 580 1 no rank 1411023 Peptostreptococcaceae bacterium oral taxon 929 580 1 0 2081703 species Christensenellaceae 15 1 0 3 5555 990719 family 990721 genus 1 112 Christensenella 5540 2 0 Christensenella massiliensis 0 1 5428 1805714 species 186807 family Peptococcaceae 580 1 0 22444 28 79206 genus 1 Desulfosporosinus 15 3351 4 0 Desulfosporosinus meridiei 755 1 0 79209 species species 885581 0 1395 1 Desulfosporosinus acidiphilus 1563 species Desulfosporosinus orientis 0 1186 1 471826 genus 4 Candidatus Desulforudis 1 0 2 614 471827 species Candidatus Desulforudis audaxviator 0 1 610 36853 genus 1 16 Desulfitobacterium 5506 5 0 49338 species Desulfitobacterium hafniense 0 1 2296 0 1 799 Desulfitobacterium dehalogenans species 36854 1215 1 0 Desulfitobacterium metallireducens species 142877 Desulfitobacterium dichloroeliminans 1 1180 0 233055 species 2282742 genus 0 1109 1 Desulfotomaculum acetoxidans 1109 1 0 58138 species 1 Dehalobacterium 2 1561 2 0 51514 genus 51515 species Dehalobacterium formicoaceticum 1 1559 0 56112 genus 1 55 Dehalobacter 4 3200 0 0 2 1980 2635733 no rank 1147129 species Dehalobacter sp. DCA 0 899 1 0 1081 1 Dehalobacter sp. CF species 1131462 0 1165 1 Dehalobacter restrictus species 55583 2282740 genus 714 1 0 Desulfotomaculum gibsoniae 714 1 0 102134 species 0 5 4380 Desulfotomaculum 19 1 genus 1562 Desulfotomaculum ferrireducens 0 1131 1 1833852 species species 59610 1 1421 0 Desulfotomaculum reducens Desulfotomaculum nigrificans 1 846 0 1565 species species 1564 0 963 1 Desulfotomaculum ruminis 2 722 0 1 Syntrophobotulus 3 genus 51196 species 51197 719 1 0 Syntrophobotulus glycolicus genus 278993 0 707 1 0 1 707 Thermincola potens species 863643 653 2 0 68298 family 129001 genus 0 1 341 0 1 341 Syntrophothermus lipocalidus species 86170 1 312 0 genus 862 species 863 1 312 0 Syntrophomonas wolfei no rank 538999 10 49952 0 4 3495 0 1 Clostridiales Family XIII. Incertae Sedis 5 family 543314 1641 2 0 1 1 Mogibacterium genus 86331 species 114527 1 1640 0 Mogibacterium diversum 1849 1 0 [Eubacterium] sulci species 143393 family 539000 763 3 0 1 8 Clostridiales Family XVII. Incertae Sedis 2 755 0 1 3 Thermaerobacter genus 73918 species 73919 0 1 752 Thermaerobacter marianensis 2717089 genus 0 1 9833 2086584 species Mordavella sp. Marseille-P3756 0 1 9833 35861 2 0 1 Intestinimonas 149 genus 1392389 species 1297617 0 35712 1 Intestinimonas butyriciproducens family 543349 3 1056 0 1 4 Symbiobacteriaceae genus 2733 2 1052 0 1 Symbiobacterium 3 2734 species Symbiobacterium thermophilum 1049 1 0 family 2304686 16536 11 0 1 Fastidiosipila 1 0 2 673 236752 genus 236753 species Fastidiosipila sanguinis 1 672 0 genus 1637257 1 904 0 884684 species Mageeibacillus indolicus 0 904 1 1 1093 0 genus 2304691 1093 1 0 [Clostridium] stercorarium species 1510 2304693 genus 1 1306 0 [Clostridium] thermosuccinogenes 0 1 1306 84032 species genus 1508657 0 1243 2 114 Ruminiclostridium 1 0 1129 1 [Clostridium] cellulolyticum species 1521 2305130 no rank 0 1 6528 1834198 species Ruminiclostridium sp. KB18 0 1 6528 0 4789 3 2304692 genus 288965 species [Clostridium] clariflavum 0 1 1399 Herbivorax saccincola 0 1491 1 1677857 species Ruminiclostridium thermocellum 0 1 1899 1515 species family 541000 0 542098 12 Ruminococcaceae 165 1 genus 253238 2 4151 0 1 8 Ethanoligenens species 253239 1 4143 0 Ethanoligenens harbinense 0 1 1567 552397 no rank species 29343 1567 1 0 [Clostridium] cellulosi 300 Faecalibacterium 1 0 2 481919 216851 genus 481619 1 0 Faecalibacterium prausnitzii species 853 1 Ruminococcus 41 10206 3 0 1263 genus 0 6573 1 Ruminococcus bicirculans species 1160721 Ruminococcus albus 0 1 3592 1264 species 0 1 2731 no rank 2305133 1572656 species Ruminococcaceae bacterium CPB6 2731 1 0 946234 genus 54 Flavonifractor 1 0 41359 2 0 1 41305 Flavonifractor plautii species 292800 2770089 order 1400 3 0 family 2770093 630 2 0 genus 291988 630 2 0 1 Thermosediminibacter 3 1 627 0 Thermosediminibacter oceani species 291990 2770092 family 1 770 0 1 770 0 genus 499228 Tepidanaerobacter acetatoxydans 770 1 0 499229 species class 1737404 10019 17 0 no rank 1737407 0 708 2 1 Ezakiella 2 2 708 0 1582879 genus 1 706 0 Ezakiella massiliensis species 1852374 0 9311 15 26 Tissierellales 1 order 1737405 0 2 2050 2042895 family 1505664 genus Gottschalkia 2 1 0 2050 2 species 1556 0 1 2048 Gottschalkia acidurici 1 415 Peptoniphilaceae 12 7235 0 1570339 family genus 165779 0 3 1780 3 Anaerococcus 1 Anaerococcus mediterraneensis 0 725 1 1870984 species 33034 species Anaerococcus prevotii 0 1052 1 genus 150022 0 1402 2 17 Finegoldia 1 Finegoldia magna 0 1385 1 1260 species 1 1 Peptoniphilus 2 1033 0 162289 genus no rank 2637196 1032 1 0 Peptoniphilus sp. ING2-D1G 1 1032 0 1912856 species genus 1161127 2 1239 0 1 Murdochiella 2 Murdochiella vaginalis 1 1237 0 1852373 species 1366 2 0 1 17 Parvimonas genus 543311 1 1349 0 Parvimonas micra species 33033 11 8229 0 1 Erysipelotrichia 5 class 526524 526525 order 6 Erysipelotrichales 1 0 10 8224 family 128827 9 8218 0 1 Erysipelotrichaceae 15 no rank 544447 1 3455 0 1 3455 0 Erysipelotrichaceae bacterium I46 species 1834207 19 Erysipelothrix 1 0 3 1102 1647 genus 427 1 0 Erysipelothrix rhusiopathiae species 1648 Erysipelothrix larvae 0 656 1 1514105 species genus 191303 2 2356 0 1 4 Turicibacter no rank 2638206 0 2352 1 0 2352 1 Turicibacter sp. H121 species 1712675 1 Faecalibaculum 2 2 1290 0 1729679 genus Faecalibaculum rodentium 1 1288 0 1702221 species 0 771694 31 Negativicutes 37 1 class 909932 1 Acidaminococcales 11 9607 5 0 1843488 order Acidaminococcaceae 21 1 0 4 9596 909930 family Acidaminococcus 20 1 0 3 9575 904 genus Acidaminococcus fermentans 1 2861 0 905 species 1 6694 0 Acidaminococcus intestini species 187327 Veillonellales 144 1 0 11 35636 1843489 order family 31977 10 35492 0 1 Veillonellaceae 912 genus 39948 2 12028 0 1 Dialister 10 39950 species Dialister pneumosintes 1 12018 0 0 3 10605 Veillonella 8 1 genus 29465 Veillonella parvula 0 7748 1 29466 species 0 1 2849 Veillonella rodentium species 248315 genus 906 0 2 9021 Megasphaera 174 1 Megasphaera elsdenii 1 8847 0 907 species genus 909928 2 2926 0 1 Negativicoccus 13 2913 1 0 Negativicoccus massiliensis species 1702287 1 Selenomonadales 106 726414 14 0 909929 order 81 Selenomonadaceae 1 0 713013 9 1843491 family genus 970 0 12178 6 Selenomonas 84 1 69823 species Selenomonas sputigena 0 1 2564 4228 1 0 Selenomonas ruminantium species 971 2637378 no rank 3 5302 0 712538 species Selenomonas sp. oral taxon 478 0 1813 1 species 1884263 1685 1 0 Selenomonas sp. oral taxon 920 species 713030 1 1804 0 Selenomonas sp. oral taxon 136 158846 genus 21 Megamonas 1 0 700754 2 Megamonas hypermegale 0 1 700733 158847 species 0 4 13295 Sporomusaceae 6 1 family 1843490 Pelosinus 22 1 0 13289 3 365348 genus Pelosinus fermentans 1 6812 0 365349 species 0 1 6455 no rank 2629460 1 6455 0 Pelosinus sp. UFO1 species 484770 19 4902 0 57723 phylum 1562566 class 1 Blastocatellia 1 210 2 0 genus 458032 1 209 0 species 458033 0 209 1 Chloracidobacterium thermophilum 1 19 Acidobacteriia 4692 17 0 204432 class 204433 order 1 12 Acidobacteriales 12 3523 0 family 204434 0 3511 11 Acidobacteriaceae 21 1 0 1081 3 3 Terriglobus 1 genus 392733 392734 species Terriglobus roseus 0 1 760 species 870903 0 318 1 Terriglobus saanensis genus 33973 712 2 0 1 Acidobacterium 3 709 1 0 Acidobacterium capsulatum species 33075 1 Granulicella 6 1386 3 0 940557 genus Granulicella mallensis 756 1 0 940614 species 624 1 0 Granulicella tundricola species 940615 0 311 2 Candidatus Koribacter 4 1 genus 658061 Candidatus Koribacter versatilis 307 1 0 658062 species 332160 order 6 Solibacterales 1 0 1150 4 9 Solibacteraceae 1 0 3 1144 332161 family genus 332162 2 1135 0 1 Candidatus Solibacter 20 species 332163 0 1 1115 Candidatus Solibacter usitatus 200940 phylum 0 1625 5 67799 class 0 1625 5 5 1625 0 188710 order 188711 family 1 Thermodesulfobacteriaceae 2 1625 5 0 0 981 2 genus 1740 Thermodesulfobacterium commune 0 211 1 1741 species species 1295609 1 770 0 Thermodesulfobacterium geofontis 1 303 0 genus 444090 species 1653476 0 303 1 Caldimicrobium thiodismutans 339 1 0 genus 241192 species 171695 339 1 0 Thermodesulfatator indicus 2157 superkingdom 262 34488 0 clade 1783276 0 98 1 phylum 1801631 0 98 1 2490204 genus 1 98 0 Candidatus Micrarchaeota archaeon Mia14 0 98 1 1920749 species phylum 28890 0 29687 211 class 183980 0 1246 8 2231 order 1 1 Archaeoglobales 1246 8 0 1245 7 0 family 2232 2233 genus 738 4 0 0 52 1 Archaeoglobus profundus species 84156 58290 species Archaeoglobus veneficus 0 48 1 Archaeoglobus fulgidus 276 1 0 2234 species Archaeoglobus sulfaticallidus 0 1 362 1316941 species 0 1 216 54260 genus 216 1 0 Ferroglobus placidus species 54261 190818 genus 0 291 2 Geoglobus ahangari 42 1 0 113653 species 1 249 0 Geoglobus acetivorans species 565033 clade 2283794 9060 38 0 0 23 4383 Methanobacteria 2 1 class 183925 4381 22 0 order 2158 210 1 0 family 2178 1 210 0 2179 genus 2180 species Methanothermus fervidus 210 1 0 family 2159 21 4171 0 1 Methanobacteriaceae 1 2172 genus 1 3 Methanobrevibacter 7 2480 0 no rank 2638681 0 2 625 Methanobrevibacter sp. AbM4 0 235 1 224719 species Methanobrevibacter sp. YE315 390 1 0 1609968 species 0 405 1 Methanobrevibacter ruminantium species 83816 species 230361 431 1 0 Methanobrevibacter millerae Methanobrevibacter smithii 1 453 0 2173 species 0 1 563 Methanobrevibacter olleyae species 294671 genus 2160 0 7 1205 0 1 117 Methanobacterium formicicum species 2162 1 397 0 Methanobacterium lacus species 877455 0 62 1 Methanobacterium paludis species 868131 0 2 445 2627676 no rank 1379702 species Methanobacterium sp. MB1 0 1 338 1911685 species Methanobacterium sp. MZ-A1 107 1 0 Methanobacterium congolense 0 82 1 118062 species 0 1 102 Methanobacterium subterraneum species 59277 1 361 0 2316 genus Methanosphaera stadtmanae 1 361 0 2317 species 0 5 124 1 Methanothermobacter 1 genus 145260 Methanothermobacter wolfeii 0 1 9 145261 species 145263 species Methanothermobacter marburgensis 0 1 32 2631116 no rank 36 1 0 866790 species Methanothermobacter sp. CaT2 1 36 0 145262 species Methanothermobacter thermautotrophicus 0 46 1 Methanococci 1 1 0 15 4677 183939 class order 2182 14 4676 0 1 Methanococcales 38 2621 5 0 family 2183 155862 genus 0 422 1 species 155863 0 1 422 Methanothermococcus okinawensis 0 4 2199 genus 2184 42879 species Methanococcus aeolicus 0 173 1 0 1 163 Methanococcus voltae species 2188 species 39152 0 1479 1 Methanococcus maripaludis 2187 species Methanococcus vannielii 0 1 384 family 196117 2017 8 0 genus 196118 1739 7 0 1 1 Methanocaldococcus no rank 2641196 0 1 413 Methanocaldococcus sp. FS406-22 413 1 0 644281 species species 73913 1 313 0 Methanocaldococcus vulcanius 1 356 0 Methanocaldococcus bathoardescens species 1301915 0 1 301 Methanocaldococcus jannaschii species 2190 83171 species Methanocaldococcus fervens 0 1 268 Methanocaldococcus infernus 87 1 0 67760 species 0 1 278 196119 genus Methanotorris igneus 1 278 0 2189 species clade 2283796 0 1668 17 1 8 Thermoplasmata 1401 15 0 183967 class 2301 order 1 1 Thermoplasmatales 8 728 0 family 46630 1 102 0 0 1 102 genus 46631 0 102 1 Picrophilus torridus species 82076 0 1 316 1919231 no rank 0 316 1 Thermoplasmatales archaeon BRNA1 species 1054217 2 152 0 family 90142 152 2 0 74968 genus 116 1 0 Ferroplasma acidarmanus species 97393 1 36 0 Ferroplasma acidiphilum species 74969 0 1 63 family 1747776 63 1 0 genus 1747777 species 1673428 1 63 0 Cuniculiplasma divulgatum 0 2 94 family 46659 0 2 94 2302 genus species 50339 0 44 1 Thermoplasma volcanium 0 1 50 Thermoplasma acidophilum species 2303 1235850 order 1 Methanomassiliicoccales 1 0 509 5 2 416 0 1577788 family genus 1080709 0 1 231 1406512 species Candidatus Methanomassiliicoccus intestinalis 0 231 1 1 185 0 genus 1607807 species 1577791 185 1 0 Candidatus Methanoplasma termitum family 2517203 92 2 0 4 Candidatus Methanomethylophilus 1 0 92 2 1291539 genus species 1291540 0 88 1 Candidatus Methanomethylophilus alvus 0 1 156 no rank 1234666 methanogenic archaeon ISO4-H5 1 156 0 1495144 species 1803510 clade 267 2 0 379546 genus 267 2 0 1 33 0 2633939 no rank 673860 species Aciduliprofundum sp. MAR08-339 0 1 33 379547 species Aciduliprofundum boonei 1 234 0 2290931 clade 0 14282 108 224756 class 1 16 Methanomicrobia 7900 46 0 2191 order Methanomicrobiales 7 1 0 1744 14 338 1 0 88404 family 338 1 0 2192 genus Methanocorpusculum labreanum 0 338 1 83984 species family 196137 0 344 1 1 344 0 genus 2202 344 1 0 Methanospirillum hungatei species 2203 1198451 family 1 Methanoregulaceae 1 534 6 0 475087 genus 1 Methanosphaerula 1 0 282 2 species 475088 0 281 1 Methanosphaerula palustris 0 3 251 3 Methanoregula 1 genus 395331 species 882104 0 192 1 Methanoregula formicica Methanoregula boonei 56 1 0 358766 species 2194 family 0 521 5 0 4 448 Methanoculleus 8 1 genus 45989 0 150 1 2619537 no rank 1 150 0 Methanoculleus sp. MAB1 species 86622 143 1 0 Methanoculleus marisnigri species 2198 0 1 147 Methanoculleus bourgensis species 83986 genus 230355 0 1 73 0 73 1 Methanolacinia petrolearia species 54120 0 470 4 Methanocellales 15 1 order 570264 3 455 0 570265 family 0 3 455 2 Methanocella 1 genus 570266 Methanocella conradii 1 89 0 1175444 species Methanocella arvoryzae 364 1 0 1175445 species 27 5670 0 1 Methanosarcinales 8 order 94695 0 23 5263 41 Methanosarcinaceae 1 family 2206 1 Methanohalophilus 3 493 3 0 2175 genus 2177 species Methanohalophilus halophilus 290 1 0 Methanohalophilus mahii 1 200 0 2176 species genus 101191 0 1 329 species 101192 329 1 0 Methanomethylovorans hollandica 1 418 0 196136 genus 39669 species Methanosalsum zhilinae 0 1 418 1 5 Methanosarcina 3205 13 0 2207 genus 578 1 0 Methanosarcina mazei species 2209 0 208 1 Methanosarcina vacuolata species 2215 0 1 225 Methanosarcina horonobensis species 418008 2208 species Methanosarcina barkeri 716 1 0 170861 species Methanosarcina lacustris 0 1 161 species 38027 1 277 0 Methanosarcina siciliae Methanosarcina thermophila 135 1 0 2210 species no rank 2644672 0 4 703 1434099 species Methanosarcina sp. Kolksee 1 154 0 Methanosarcina sp. WWM596 296 1 0 1434103 species 1434102 species Methanosarcina sp. WH1 0 81 1 1434100 species Methanosarcina sp. MTP4 0 1 172 species 2214 0 1 197 Methanosarcina acetivorans 2321 genus 1 375 0 2322 species Methanohalobium evestigatum 0 375 1 genus 2225 2 299 0 Methanococcoides methylutens 0 1 71 2226 species species 29291 0 228 1 Methanococcoides burtonii 0 1 103 2220 genus species 420950 0 103 1 Methanolobus psychrophilus 143067 family Methanosaetaceae 4 1 0 399 3 2222 genus 0 2 395 Methanothrix soehngenii 0 201 1 2223 species 301375 species Methanosaeta harundinacea 0 1 194 class 183963 6382 62 0 1 28 Halobacteria 1644060 order 1 Natrialbales 13 2044 17 0 family 1644061 0 16 2031 16 Natrialbaceae 1 29287 genus 0 1 169 0 1 169 Natronococcus occultus species 29288 0 363 3 Natrinema 3 1 genus 88723 247 1 0 no rank 2622230 406552 species Natrinema sp. J7-2 1 247 0 species 69525 0 113 1 Natrinema pellirubrum 1 210 0 203193 genus Halobiforma lacisalsi 210 1 0 229731 species genus 2256 0 1 144 144 1 0 Natronobacterium gregoryi species 44930 387342 genus 178 1 0 387343 species Halopiger xanaduensis 0 178 1 1 245 0 1269201 genus no rank 2621923 0 1 245 species 1333523 1 245 0 Salinarchaeum sp. Harcht-Bsk1 121871 genus 1 2 Haloterrigena 3 362 0 Haloterrigena daqingensis 0 116 1 588898 species 244 1 0 Haloterrigena turkmenica species 62320 0 156 2 Halostagnicola 2 1 genus 353799 species 353800 154 1 0 Halostagnicola larsenii genus 63742 0 2 188 Natrialba 1 1 Natrialba magadii 0 187 1 13769 species 27 2252 0 1 Halobacteriales 20 order 2235 1 53 Haloarculaceae 16 1456 0 1963268 family 0 2 123 2 Halorientalis 1 genus 1073987 2648975 no rank 121 1 0 Halorientalis sp. IM1011 0 1 121 1932360 species 2237 genus 1 Haloarcula 5 5 743 0 2624677 no rank 0 1 239 0 239 1 Haloarcula sp. CBA1115 species 1592728 1 135 0 Haloarcula marismortui species 2238 species 1932004 1 113 0 Haloarcula taiwanensis 51589 species Haloarcula hispanica 251 1 0 146825 genus Halorhabdus 1 1 0 3 221 species 146826 109 1 0 Halorhabdus utahensis 430914 species Halorhabdus tiamatea 1 111 0 3 192 0 1 1 Natronomonas genus 63743 Natronomonas pharaonis 0 1 127 2257 species 416273 species Natronomonas moolapensis 64 1 0 0 124 2 Halomicrobium 2 1 genus 203135 57705 species Halomicrobium mukohataei 1 122 0 1 1 Halobacteriaceae 776 10 0 2236 family 0 1 67 genus 1656823 species 1604004 67 1 0 Halanaeroarchaeum sulfurireducens 332246 genus 1 Halalkalicoccus 1 175 2 0 413810 species Halalkalicoccus jeotgali 174 1 0 1 1 Halodesulfurarchaeum 2 60 0 1980514 genus 1873524 species Halodesulfurarchaeum formicicum 0 1 59 2239 genus Halobacterium 2 1 0 473 4 Halobacterium hubeiense 0 1 133 1407499 species 2668073 no rank 0 150 1 751944 species Halobacterium sp. DL1 1 150 0 Halobacterium salinarum 0 188 1 2242 species 0 17 2058 27 Haloferacales 1 order 1644055 0 1204 8 Haloferacaceae 2 1 family 1644056 293431 genus 1 133 0 0 133 1 Haloquadratum walsbyi species 293091 1 Halogeometricum 1 2 195 0 60846 genus 60847 species Halogeometricum borinquense 194 1 0 1 Haloferax 8 874 4 0 2251 genus species 35746 1 235 0 Haloferax gibbonsii Haloferax mediterranei 251 1 0 2252 species Haloferax volcanii 0 1 380 2246 species 1963271 family 1 Halorubraceae 6 7 717 0 2 144 0 1 16 Halopenitus genus 1209988 1048396 species Halopenitus persicus 1 128 0 1644057 genus 0 295 1 295 1 0 Salinigranum rubrum species 755307 1 Halorubrum 8 272 3 0 56688 genus species 2247 102 1 0 Halorubrum lacusprofundi Halorubrum trapanicum 0 162 1 29284 species no rank 2678336 1 110 0 halophilic archaeon DL31 110 1 0 756883 species 183968 class 0 3431 40 3431 40 0 1 Thermococcales 4 order 2258 0 39 3427 Thermococcaceae 5 1 family 2259 Pyrococcus 1 1 0 8 1198 2260 genus Pyrococcus kukulkanii 1 39 0 1609559 species 2261 species Pyrococcus furiosus 1 247 0 2629106 no rank 2 428 0 Pyrococcus sp. NA2 1 281 0 342949 species Pyrococcus sp. ST04 1 147 0 1183377 species species 1008460 1 71 0 Pyrococcus yayanosii 53953 species Pyrococcus horikoshii 0 1 220 Pyrococcus abyssi 192 1 0 29292 species 0 1 119 genus 83867 species 971279 119 1 0 Palaeococcus pacificus 16 Thermococcus 1 0 29 2105 2263 genus species 172049 0 179 1 Thermococcus sibiricus species 187880 56 1 0 Thermococcus radiotolerans 277988 species Thermococcus thioreducens 1 219 0 0 1 104 Thermococcus gorgonarius species 71997 Thermococcus siculi 1 42 0 72803 species species 2265 1 91 0 Thermococcus litoralis species 53952 41 1 0 Thermococcus peptonophilus Thermococcus celer 0 56 1 2264 species species 54077 0 64 1 Thermococcus barossii 0 1 25 Thermococcus paralvinellae species 582419 Thermococcus barophilus 0 1 144 55802 species 0 73 1 Thermococcus guaymasensis species 110164 44 1 0 Thermococcus profundus species 49899 0 1 79 Thermococcus chitonophagus species 54262 0 45 1 Thermococcus nautili species 195522 Thermococcus kodakarensis 0 71 1 311400 species 342948 species Thermococcus onnurineus 67 1 0 163003 species Thermococcus cleftensis 1 41 0 no rank 2627626 401 6 0 1674923 species Thermococcus sp. 2319x1 1 54 0 species 2016361 0 53 1 Thermococcus sp. EXT12c species 2008440 53 1 0 Thermococcus sp. 5-4 species 122420 20 1 0 Thermococcus sp. P6 83 1 0 Thermococcus sp. AM4 species 246969 0 1 138 Thermococcus sp. 4557 species 1042877 species 1712654 0 38 1 Thermococcus piezophilus species 1505907 0 1 95 Thermococcus eurythermalis species 71998 0 1 76 Thermococcus pacificus species 187878 1 38 0 Thermococcus gammatolerans 0 4703 50 1783275 clade 51967 phylum 0 15 1 1 15 0 genus 498845 1 15 0 Candidatus Korarchaeum cryptofilum species 498846 0 11 1625 651137 phylum 31932 order 0 1141 3 family 338190 0 1141 3 0 2 841 338191 genus Candidatus Nitrosopumilus sediminis 278 1 0 1229909 species species 1580092 563 1 0 Candidatus Nitrosopumilus adriaticus 0 300 1 1993653 genus 1898749 species Candidatus Nitrosomarinus catalina 0 300 1 class 1643678 5 149 0 1 1 Nitrososphaeria order 1033996 3 88 0 1 Nitrososphaerales 1 0 87 2 1033997 family 497726 genus 1 Nitrososphaera 1 87 2 0 0 1 86 Nitrososphaera viennensis species 1034015 order 1968909 60 1 0 1968910 family 0 1 60 60 1 0 498374 genus Candidatus Nitrosocaldus islandicus 0 1 60 2045011 species 0 3 335 651142 no rank genus 1825023 98 2 0 1846278 species Candidatus Nitrosotenuis sp. AQ6f 1 61 0 species 1603555 0 37 1 Candidatus Nitrosotenuis cloacae 1593364 genus 0 237 1 1410606 species Candidatus Nitrosopelagicus brevis 0 237 1 0 3063 38 28889 phylum 183924 class Thermoprotei 6 1 0 38 3063 13 377 0 2266 order family 2267 165 7 0 1 1 Thermoproteaceae 7 1 0 genus 2276 2277 species Pyrobaculum islandicum 7 1 0 2 74 0 164450 genus Vulcanisaeta distributa 58 1 0 164451 species 985052 species Vulcanisaeta moutnovskia 0 16 1 genus 2270 0 73 2 species 2271 1 30 0 Thermoproteus tenax species 184117 43 1 0 Thermoproteus uzoniensis 0 1 10 genus 76886 76887 species Caldivirga maquilingensis 10 1 0 1 Thermofilaceae 1 0 6 212 114378 family 211 5 0 1 Thermofilum 1 genus 2268 Thermofilum adornatus 0 88 1 1365176 species 0 23 1 Thermofilum pendens species 2269 Thermofilum carboxyditrophus 0 1 86 1483572 species 0 13 1 Thermofilum uzonense species 1550241 order 871006 0 3 119 family 871007 2 23 0 1 Acidilobaceae 1 genus 105850 22 1 0 Acidilobus saccharovorans 22 1 0 242703 species 255472 family 96 1 0 200414 genus 0 1 96 species 200415 0 1 96 Caldisphaera lagunensis order 114380 12 381 0 family 2272 307 9 0 1 9 0 genus 54253 54254 species Thermosphaera aggregans 0 9 1 2273 genus 0 2 22 2275 species Desulfurococcus mucosus 0 7 1 Desulfurococcus amylolyticus 1 15 0 94694 species genus 54258 2 30 0 species 54259 15 1 0 Ignicoccus islandicus 160233 species Ignicoccus hospitalis 0 1 15 genus 477695 42 1 0 species 1200300 42 1 0 Thermogladius calderae 2279 genus 1 Staphylothermus 1 0 3 204 species 2280 0 1 167 Staphylothermus marinus 1 36 0 Staphylothermus hellenicus species 84599 0 3 74 family 2307 1 19 0 54247 genus 1 19 0 Hyperthermus butylicus species 54248 genus 54251 16 1 0 Pyrolobus fumarii 0 16 1 54252 species genus 2308 0 39 1 1273541 species Pyrodictium delaneyi 0 1 39 0 2180 9 2281 order family 118883 2180 9 0 1 22 Sulfolobaceae 0 31 2 genus 41980 14 1 0 Metallosphaera cuprina species 1006005 43687 species Metallosphaera sedula 0 1 17 79 1 0 2100760 genus Sulfolobus solfataricus 79 1 0 2287 species genus 2284 0 3 959 2641160 no rank 0 1 449 1 449 0 Sulfolobus sp. A20 species 1891280 Sulfolobus acidocaldarius 166 1 0 2285 species 43080 species Sulfolobus islandicus 0 1 344 genus 69655 0 375 1 species 111955 0 1 375 Sulfolobus tokodaii 12914 genus 0 1 714 Acidianus hospitalis 0 714 1 563177 species