members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 4796 29704 13424420 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 2157 superkingdom 280 0 113427 2 28890 1 Euryarchaeota 99252 phylum 226 0 1 183968 1 0 41 class 8660 Thermococci 1 2258 11 0 40 order 8659 Thermococcales 1 2259 13 39 0 family 8648 Thermococcaceae 1 2263 70 29 0 genus 7197 Thermococcus species 1 0 Thermococcus radiotolerans 188 187880 0 1 species 265 Thermococcus thioreducens 277988 72803 Thermococcus siculi 174 species 0 1 species 0 1 Thermococcus chitonophagus 186 54262 species 1 0 Thermococcus barophilus 615 55802 54077 0 1 species 135 Thermococcus barossii 1 0 species 421 Thermococcus paralvinellae 582419 188 Thermococcus guaymasensis 1 0 species 110164 187878 165 Thermococcus gammatolerans 1 0 species species 1 0 Thermococcus piezophilus 188 1712654 2264 Thermococcus celer 164 species 0 1 71997 0 1 species 96 Thermococcus gorgonarius 175 Thermococcus pacificus 1 0 species 71998 183 Thermococcus nautili 0 1 species 195522 53952 0 1 species 222 Thermococcus peptonophilus species 0 1 Thermococcus litoralis 342 2265 172049 931 Thermococcus sibiricus 1 0 species 6 0 no rank 1354 2627626 Thermococcus sp. 2319x1 288 species 1 0 1674923 Thermococcus sp. AM4 108 species 1 0 246969 1042877 0 1 species 276 Thermococcus sp. 4557 361 Thermococcus sp. 5-4 1 0 species 2008440 species 1 0 Thermococcus sp. EXT12c 164 2016361 0 1 species 157 Thermococcus sp. P6 122420 species 1 0 Thermococcus kodakarensis 159 311400 Thermococcus onnurineus 286 species 0 1 342948 157 Thermococcus eurythermalis 1 0 species 1505907 49899 253 Thermococcus profundus 1 0 species species 0 1 Thermococcus cleftensis 280 163003 genus 1 0 123 83867 971279 0 1 species 123 Palaeococcus pacificus Pyrococcus 1315 genus 8 0 2 1 2260 1 0 species 121 Pyrococcus abyssi 29292 0 2 no rank 260 2629106 342949 139 Pyrococcus sp. NA2 1 0 species 121 Pyrococcus sp. ST04 0 1 species 1183377 species 0 1 Pyrococcus yayanosii 167 1008460 53953 1 0 species 498 Pyrococcus horikoshii species 1 0 Pyrococcus furiosus 144 2261 1609559 0 1 species 123 Pyrococcus kukulkanii 2283796 20 0 clade 7041 class 0 17 Thermoplasmata 6282 17 1 183967 1 1235850 1 order 6 0 Methanomassiliicoccales 1396 432 2 0 family 2517203 1 1291539 3 432 Candidatus Methanomethylophilus 0 2 genus 1291540 1 0 species 429 Candidatus Methanomethylophilus alvus family 3 0 Methanomassiliicoccaceae 963 1 1 1577788 1607807 0 1 genus 148 1577791 148 Candidatus Methanoplasma termitum 0 1 species 1080709 genus 1 0 814 species 0 1 Candidatus Methanomassiliicoccus intestinalis 814 1406512 624 no rank 0 1 1234666 0 1 species 624 methanogenic archaeon ISO4-H5 1495144 5 1 2301 order 0 9 Thermoplasmatales 4245 46630 751 family 1 0 46631 751 1 0 genus 82076 species 1 0 Picrophilus torridus 751 1747776 family 0 2 335 1 1747777 1 genus 0 2 Cuniculiplasma 335 1673428 Cuniculiplasma divulgatum 334 species 1 0 46659 891 family 2 0 2302 891 2 0 genus species 1 0 Thermoplasma volcanium 292 50339 2303 species 0 1 Thermoplasma acidophilum 599 704 0 1 no rank 1919231 species 1 0 Thermoplasmatales archaeon BRNA1 704 1054217 family 0 2 1559 90142 74968 0 2 genus 1559 752 Ferroplasma acidarmanus 0 1 species 97393 species 0 1 Ferroplasma acidiphilum 807 74969 1803510 759 clade 3 0 Aciduliprofundum 759 genus 3 0 13 1 379546 1 0 species 621 Aciduliprofundum boonei 379547 2633939 no rank 0 1 125 1 0 species 125 Aciduliprofundum sp. MAR08-339 673860 2283794 40 0 clade 39658 27 1 183939 class 15 0 Methanococci 19419 2182 1 5 14 0 order 19392 Methanococcales 6495 Methanocaldococcaceae 8 0 family 1 196117 9 196118 genus 6 0 5706 1 0 species 857 Methanocaldococcus fervens 83171 species 1 0 Methanocaldococcus bathoardescens 1062 1301915 0 1 species 681 Methanocaldococcus infernus 67760 73913 0 1 species 1256 Methanocaldococcus vulcanius 2641196 no rank 1 0 1137 Methanocaldococcus sp. FS406-22 1137 species 1 0 644281 2190 713 Methanocaldococcus jannaschii 0 1 species 196119 genus 1 0 780 Methanotorris igneus 780 species 1 0 2189 2183 0 5 family 12892 1740 genus 1 0 155862 1740 Methanothermococcus okinawensis 0 1 species 155863 2184 genus 4 0 11152 39152 species 0 1 Methanococcus maripaludis 7536 2187 Methanococcus vannielii 1074 species 0 1 1207 Methanococcus aeolicus 1 0 species 42879 Methanococcus voltae 1335 species 0 1 2188 1 183925 20 0 25 class 20239 Methanobacteria 1 1 2158 order 24 0 Methanobacteriales 20219 2178 1824 family 1 0 1824 0 1 genus 2179 2180 0 1 species 1824 Methanothermus fervidus 5 1 2159 Methanobacteriaceae 18394 family 0 22 18 1 2172 genus 0 7 Methanobrevibacter 10294 Methanobrevibacter ruminantium 1693 species 1 0 83816 species 1 0 Methanobrevibacter millerae 1446 230361 2173 0 1 species 2224 Methanobrevibacter smithii 2638681 no rank 0 2 2690 1 0 species 1578 Methanobrevibacter sp. YE315 1609968 species 0 1 Methanobrevibacter sp. AbM4 1112 224719 0 1 species 2223 Methanobrevibacter olleyae 294671 2160 1 2 0 8 genus 5310 Methanobacterium Methanobacterium paludis 768 species 0 1 868131 2627676 no rank 0 2 1319 1379702 970 Methanobacterium sp. MB1 1 0 species 349 Methanobacterium sp. MZ-A1 0 1 species 1911685 877455 1373 Methanobacterium lacus 1 0 species 2162 Methanobacterium formicicum 902 species 1 0 59277 Methanobacterium subterraneum 358 species 0 1 588 Methanobacterium congolense 1 0 species 118062 49 1 145260 Methanothermobacter 883 genus 5 0 1 0 species 244 Methanothermobacter marburgensis 145263 2631116 232 1 0 no rank 866790 Methanothermobacter sp. CaT2 232 species 1 0 145262 species 0 1 Methanothermobacter thermautotrophicus 143 145261 0 1 species 215 Methanothermobacter wolfeii genus 0 1 1902 2316 species 1 0 Methanosphaera stadtmanae 1902 2317 2290931 41038 116 0 clade 64 0 class 14637 Halobacteria 1 183963 58 28 0 order 5749 Halobacteriales 2235 1 47 family 0 11 Halobacteriaceae 1875 5 1 2236 8 2239 1 Halobacterium 1103 genus 4 0 320 no rank 0 1 2668073 0 1 species 320 Halobacterium sp. DL1 751944 2242 Halobacterium salinarum 377 species 0 1 Halobacterium hubeiense 398 species 1 0 1407499 1 1 1980514 Halodesulfurarchaeum 187 genus 2 0 1873524 186 Halodesulfurarchaeum formicicum 0 1 species genus 2 0 Halanaeroarchaeum 176 5 1656823 1 1604004 species 0 1 Halanaeroarchaeum sulfurireducens 171 8 1 332246 genus 2 0 Halalkalicoccus 404 413810 396 Halalkalicoccus jeotgali 0 1 species 23 1 1963268 Haloarculaceae 3827 family 16 0 genus 3 0 Natronomonas 785 2 1 63743 Natronomonas moolapensis 388 species 0 1 416273 2257 0 1 species 395 Natronomonas pharaonis genus 2 0 Halorientalis 347 1 1 1073987 2648975 346 no rank 1 0 species 1 0 Halorientalis sp. IM1011 346 1932360 4 1 146825 genus 3 0 Halorhabdus 644 430914 species 1 0 Halorhabdus tiamatea 252 1 0 species 388 Halorhabdus utahensis 146826 genus 0 2 Halomicrobium 376 6 203135 1 370 Halomicrobium mukohataei 0 1 species 57705 40 1 2237 Haloarcula 1652 genus 0 5 2238 species 1 0 Haloarcula marismortui 410 51589 1 0 species 440 Haloarcula hispanica Haloarcula taiwanensis 371 species 0 1 1932004 391 1 0 no rank 2624677 1592728 391 Haloarcula sp. CBA1115 1 0 species 55 1 1644055 order 18 0 Haloferacales 4222 no rank 0 1 261 2678336 756883 1 0 species 261 halophilic archaeon DL31 2405 Haloferacaceae 0 8 family 1 1644056 22 363 genus 0 1 293431 363 Haloquadratum walsbyi 0 1 species 293091 2 0 genus 296 Halogeometricum 60846 1 1 60847 species 1 0 Halogeometricum borinquense 295 Haloferax 1724 genus 0 4 19 2251 1 2252 0 1 species 345 Haloferax mediterranei 1 0 species 735 Haloferax volcanii 2246 625 Haloferax gibbonsii 1 0 species 35746 1501 Halorubraceae 0 8 family 1963271 1 15 1 56688 17 3 0 genus 681 Halorubrum species 0 1 Halorubrum trapanicum 379 29284 1 0 species 285 Halorubrum lacusprofundi 2247 1 1209988 17 284 Halopenitus 2 0 genus Halopenitus persicus 267 species 1 0 1048396 2 1 1644057 genus 2 0 Salinigranum 521 species 1 0 Salinigranum rubrum 519 755307 Natrialbales 4608 order 17 0 43 1 1644060 4565 Natrialbaceae 16 0 family 1 1644061 43 416 genus 0 1 203193 Halobiforma lacisalsi 416 species 1 0 229731 genus 3 0 Natrinema 1016 8 1 88723 1 0 species 403 Natrinema pellirubrum 69525 0 1 no rank 605 2622230 Natrinema sp. J7-2 605 species 1 0 406552 340 genus 0 1 353799 353800 species 1 0 Halostagnicola larsenii 340 genus 2 0 Halopiger 583 1 1 387342 species 0 1 Halopiger xanaduensis 582 387343 15 1 121871 genus 0 3 Haloterrigena 884 1 0 species 223 Haloterrigena daqingensis 588898 62320 species 1 0 Haloterrigena turkmenica 646 267 genus 0 1 2256 44930 0 1 species 267 Natronobacterium gregoryi 63742 291 genus 0 1 0 1 species 291 Natrialba magadii 13769 genus 0 2 Natronococcus 333 2 1 29287 29288 Natronococcus occultus 331 species 0 1 1269201 genus 0 1 392 392 no rank 1 0 2621923 392 Salinarchaeum sp. Harcht-Bsk1 0 1 species 1333523 class 0 52 Methanomicrobia 26401 29 1 224756 17 0 order 3897 Methanomicrobiales 2191 1 17 6 1 1198451 family 0 6 Methanoregulaceae 983 2 0 genus 333 Methanosphaerula 1 475087 4 species 0 1 Methanosphaerula palustris 329 475088 3 0 genus 644 Methanoregula 1 395331 4 882104 335 Methanoregula formicica 0 1 species 358766 305 Methanoregula boonei 0 1 species 196137 family 1 0 280 280 genus 1 0 2202 species 1 0 Methanospirillum hungatei 280 2203 12 1 2194 family 0 7 Methanomicrobiaceae 1938 1475 Methanoculleus 4 0 genus 1 45989 10 1 0 species 480 Methanoculleus marisnigri 2198 2619537 511 no rank 0 1 Methanoculleus sp. MAB1 511 species 0 1 86622 83986 474 Methanoculleus bourgensis 1 0 species 451 Methanolacinia 0 2 genus 230355 1 2 species 0 1 Methanolacinia petrolearia 449 54120 88404 0 2 family 679 1 2192 2 0 2 genus 679 Methanocorpusculum 83984 1 0 species 677 Methanocorpusculum labreanum 25 1 94695 Methanosarcinales 20776 order 31 0 Methanosarcinaceae 19986 family 26 0 10 1 2206 2321 893 genus 1 0 2322 1 0 species 893 Methanohalobium evestigatum 15372 Methanosarcina 0 13 genus 1 2207 38 2210 Methanosarcina thermophila 1517 species 1 0 1252 Methanosarcina siciliae 1 0 species 38027 1471 Methanosarcina mazei 0 1 species 2209 species 0 1 Methanosarcina lacustris 1180 170861 2214 species 1 0 Methanosarcina acetivorans 1049 Methanosarcina barkeri 3141 species 0 1 2208 599 Methanosarcina vacuolata 0 1 species 2215 4438 0 4 no rank 2644672 1434103 Methanosarcina sp. WWM596 1495 species 1 0 1434099 Methanosarcina sp. Kolksee 971 species 0 1 species 1 0 Methanosarcina sp. WH1 1453 1434102 1434100 species 0 1 Methanosarcina sp. MTP4 519 Methanosarcina horonobensis 687 species 1 0 418008 1 2175 1 1120 Methanohalophilus 0 3 genus 2176 Methanohalophilus mahii 797 species 1 0 322 Methanohalophilus halophilus 1 0 species 2177 843 genus 0 1 196136 843 Methanosalsum zhilinae 1 0 species 39669 603 Methanolobus 0 2 genus 2220 1 1 species 1 0 Methanolobus psychrophilus 602 420950 1 1 101191 Methanomethylovorans 483 genus 0 2 101192 0 1 species 482 Methanomethylovorans hollandica 4 1 2225 Methanococcoides 662 genus 3 0 0 1 species 341 Methanococcoides burtonii 29291 317 Methanococcoides methylutens 0 1 species 2226 5 143067 1 family 4 0 Methanosaetaceae 765 2222 1 2 760 Methanothrix 0 3 genus 301375 species 0 1 Methanosaeta harundinacea 344 2223 414 Methanothrix soehngenii 0 1 species 1 570264 16 1699 Methanocellales 0 3 order 0 2 family 1683 570265 570266 2 0 genus 1683 759 Methanocella conradii 1 0 species 1175444 1175445 species 0 1 Methanocella arvoryzae 924 183980 2853 class 8 0 2231 2853 order 8 0 2853 family 8 0 2232 170 0 1 genus 54260 species 0 1 Ferroglobus placidus 170 54261 genus 0 4 2207 2233 species 0 1 Archaeoglobus fulgidus 830 2234 84156 0 1 species 355 Archaeoglobus profundus 1316941 species 0 1 Archaeoglobus sulfaticallidus 744 58290 species 0 1 Archaeoglobus veneficus 278 190818 1 1 476 Geoglobus 0 3 genus 565033 231 Geoglobus acetivorans 1 0 species Geoglobus ahangari 244 species 1 0 113653 clade 0 1 155 1783276 155 0 1 phylum 1801631 2490204 genus 1 0 155 1920749 1 0 species 155 Candidatus Micrarchaeota archaeon Mia14 14020 0 53 clade 1783275 28889 10022 phylum 40 0 40 0 class 10022 Thermoprotei 1 183924 12 14 0 order 1428 2266 family 0 8 Thermoproteaceae 767 4 1 2267 0 3 genus 561 Vulcanisaeta 1 164450 1 985052 1 0 species 348 Vulcanisaeta moutnovskia 1 0 species 212 Vulcanisaeta distributa 164451 104 genus 2 0 2270 species 0 1 Thermoproteus tenax 49 2271 184117 1 0 species 55 Thermoproteus uzoniensis 2276 genus 1 0 42 2277 species 1 0 Pyrobaculum islandicum 42 1 0 genus 56 76886 76887 Caldivirga maquilingensis 56 species 0 1 1 114378 1 661 Thermofilaceae 0 6 family Thermofilum 660 genus 5 0 2 1 2268 0 1 species 282 Thermofilum adornatus 1365176 1550241 0 1 species 43 Thermofilum uzonense Thermofilum pendens 51 species 0 1 2269 1483572 1 0 species 282 Thermofilum carboxyditrophus order 0 8 5432 2281 5432 8 0 family 118883 411 0 1 genus 2100760 411 Sulfolobus solfataricus 1 0 species 2287 12914 431 genus 0 1 563177 species 1 0 Acidianus hospitalis 431 69655 1640 0 1 genus 1 0 species 1640 Sulfolobus tokodaii 111955 2284 0 3 genus 2767 Sulfolobus islandicus 1373 species 1 0 43080 715 Sulfolobus acidocaldarius 1 0 species 2285 1 0 no rank 679 2641160 species 1 0 Sulfolobus sp. A20 679 1891280 41980 183 genus 0 2 110 Metallosphaera cuprina 1 0 species 1006005 43687 Metallosphaera sedula 73 species 1 0 1 114380 1 Desulfurococcales 1815 order 0 12 234 3 0 family 2307 0 1 genus 129 54247 1 0 species 129 Hyperthermus butylicus 54248 54251 0 1 genus 54 54 Pyrolobus fumarii 0 1 species 54252 0 1 genus 51 2308 0 1 species 51 Pyrodictium delaneyi 1273541 2272 1580 family 8 0 54253 51 0 1 genus 54254 51 Thermosphaera aggregans 1 0 species genus 0 2 417 54258 1 0 species 339 Ignicoccus islandicus 54259 Ignicoccus hospitalis 78 species 1 0 160233 477695 53 genus 1 0 53 Thermogladius calderae 1 0 species 1200300 2279 905 genus 0 2 2280 species 1 0 Staphylothermus marinus 549 Staphylothermus hellenicus 356 species 0 1 84599 154 genus 0 2 2273 2275 61 Desulfurococcus mucosus 1 0 species 94694 species 1 0 Desulfurococcus amylolyticus 93 871006 5 0 order 1335 1209 Caldisphaeraceae 0 3 family 1 255472 2 1 1 200414 Caldisphaera 1207 genus 2 0 1206 Caldisphaera lagunensis 1 0 species 200415 126 0 2 family 871007 3 1 105850 genus 0 2 Acidilobus 126 242703 species 0 1 Acidilobus saccharovorans 123 651137 3892 12 0 phylum 1 1643678 2 5 0 class 439 Nitrososphaeria 132 2 0 order 1968909 family 2 0 Candidatus Nitrosocaldaceae 132 2 1968910 1 130 0 1 genus 498374 1 0 species 130 Candidatus Nitrosocaldus islandicus 2045011 2 0 order 305 1033996 0 2 family 305 1033997 2 0 genus 305 Nitrososphaera 1 497726 1 species 0 1 Nitrososphaera viennensis 304 1034015 651142 0 3 no rank 984 1 0 genus 702 1593364 1410606 species 1 0 Candidatus Nitrosopelagicus brevis 702 282 2 0 genus 1825023 Candidatus Nitrosotenuis cloacae 131 species 0 1 1603555 1846278 1 0 species 151 Candidatus Nitrosotenuis sp. AQ6f 4 0 order 2469 Nitrosopumilales 31932 1 6 family 3 0 2463 338190 338191 genus 2 0 1748 1229909 1261 Candidatus Nitrosopumilus sediminis 0 1 species 1580092 Candidatus Nitrosopumilus adriaticus 487 species 1 0 1993653 genus 1 0 715 1898749 species 0 1 Candidatus Nitrosomarinus catalina 715 0 1 phylum 106 51967 0 1 genus 106 498845 498846 106 Candidatus Korarchaeum cryptofilum 1 0 species name 0 0 1 superkingdom 0 4484 Bacteria 13281289 197 1 2 0 2 phylum 711 2138240 2 0 class 711 2138243 1 2138246 3 2 0 order 711 Coprothermobacterales 708 family 0 1 2138247 68335 708 1 0 genus 35786 1 0 species 708 Coprothermobacter proteolyticus 200918 phylum 0 44 51375 Thermotogae 51375 class 0 44 44 1 188708 Petrotogales 22300 order 8 0 6 1643947 1 1643949 0 7 family 22294 2 1511648 1 genus 2 0 Defluviitoga 3113 1006576 Defluviitoga tunisiensis 3111 species 0 1 genus 3 0 Marinitoga 16430 167 160798 1 Marinitoga piezophila 8169 species 0 1 149715 2640159 1 0 no rank 8094 1545835 0 1 species 8094 Marinitoga sp. 1137 2 28236 1 Petrotoga 2751 genus 0 2 69499 species 0 1 Petrotoga mobilis 2749 2857 Kosmotogales 0 7 order 1 1643946 7 6 1 1643948 family 0 6 Kosmotogaceae 2850 1 651456 6 3 0 genus 2019 Kosmotoga species 1 0 Kosmotoga olearia 1364 651457 1330330 Kosmotoga pacifica 649 species 0 1 1 1 1184396 Mesotoga 825 genus 0 2 824 Mesotoga prima 1 0 species 1184387 2419 1 18 28 0 order 26174 Thermotogales 0 10 family 18368 Fervidobacteriaceae 1 1643950 32 4 0 genus 4130 Fervidobacterium 1 2422 9 1 0 species 805 Fervidobacterium islandicum 2423 Fervidobacterium pennivorans 2063 species 1 0 93466 species 1 0 Fervidobacterium nodosum 1253 2424 2420 1 94 5 0 genus 14206 Thermosipho 46541 Thermosipho melanesiensis 3067 species 1 0 no rank 0 2 5744 2676525 1437364 species 0 1 Thermosipho sp. 1070 2867 1462747 species 0 1 Thermosipho sp. 1063 2877 species 0 1 Thermosipho africanus 5301 2421 family 0 17 Thermotogaceae 7788 15 1 188709 Thermotoga 4666 genus 0 11 127 1 2335 2337 Thermotoga neapolitana 482 species 1 0 0 1 species 422 Thermotoga maritima 2336 1508420 1 0 species 660 Thermotoga profunda 1508419 1 0 species 290 Thermotoga caldifontis 93930 427 Thermotoga naphthophila 1 0 species Thermotoga petrophila 340 species 0 1 93929 no rank 4 0 1918 2631113 1 0 species 483 Thermotoga sp. RQ7 126738 508 Thermotoga sp. 2812B 0 1 species 1157948 1157947 species 1 0 Thermotoga sp. Cell2 437 126740 0 1 species 490 Thermotoga sp. RQ2 5 0 genus 3107 Pseudothermotoga 1 1643951 91 119394 Pseudothermotoga thermarum 878 species 0 1 species 1 0 Pseudothermotoga hypogea 422 57487 38322 Pseudothermotoga elfii 796 species 1 0 177758 species 1 0 Pseudothermotoga lettingae 920 923 1 1224 phylum 2029 0 Proteobacteria 2056028 323504 subphylum 0 200 68525 class 0 72 Epsilonproteobacteria 167394 231 1 29547 1 213849 4130 164696 Campylobacterales 66 0 order family 5 0 4007 2771471 3 1 286130 Sulfuricurvum 708 genus 0 2 148813 705 Sulfuricurvum kujiense 1 0 species genus 0 3 Sulfurimonas 3299 14 1 202746 1 0 species 1694 Sulfurimonas autotrophica 202747 39766 Sulfurimonas denitrificans 1591 species 0 1 5 0 family 2166 2771472 genus 2 0 Nitratifractor 789 3 1 269260 786 Nitratifractor salsuginis 1 0 species 269261 1377 Sulfurovum 3 0 genus 1 265570 15 no rank 1 0 731 2646778 387093 species 1 0 Sulfurovum sp. NBC37-1 731 206403 1 0 species 631 Sulfurovum lithotrophicum 58 1 72293 family 14 0 Helicobacteraceae 14599 603 genus 0 1 843 844 603 Wolinella succinogenes 0 1 species genus 0 12 Helicobacter 13938 74 1 209 0 1 species 1534 Helicobacter typhlonius 76936 Helicobacter hepaticus 907 species 0 1 32025 213 species 1 0 Helicobacter cinaedi 968 217 510 Helicobacter mustelae 1 0 species 556 Helicobacter acinonychis 1 0 species 212 1281 Helicobacter cetorum 1 0 species 138563 214 species 0 1 Helicobacter felis 479 210 species 0 1 Helicobacter pylori 4622 1255 Helicobacter bilis 0 1 species 37372 1 0 no rank 697 2593540 222136 1 0 species 697 Helicobacter sp. MIT 01-6242 1591088 species 0 1 Helicobacter himalayensis 1055 family 0 41 Campylobacteraceae 139794 7417 1 72294 0 5 no rank 30198 2321108 1 28196 70 0 3 genus 15332 Arcobacter species 1 0 Arcobacter butzleri 9390 28197 28199 0 1 species 5872 Arcobacter nitrofigilis 7676 no rank 1 0 2321207 944547 7676 Arcobacter sp. L 1 0 species 2321187 7190 genus 1 0 Arcobacter sp. LPB0137 7190 species 0 1 1850254 1 194 1580 95937 Campylobacter 26 0 genus 206 1 0 species 5101 Campylobacter sputorum 1031542 species 1 0 Campylobacter volucris 3719 824 659 Campylobacter gracilis 1 0 species 1 0 species 1981 Campylobacter subantarcticus 497724 Campylobacter peloridis 2547 species 1 0 488546 1965231 0 1 species 3233 Campylobacter pinnipediorum species 0 1 Campylobacter ureolyticus 2467 827 Campylobacter iguaniorum 1493 species 0 1 1244531 4 0 no rank 7484 2593542 species 1 0 Campylobacter sp. RM12175 826 1660076 1660074 1 0 species 1064 Campylobacter sp. RM8964 Campylobacter sp. RM6137 1518 species 1 0 1660073 1500960 4076 Campylobacter sp. RM16704 0 1 species Campylobacter hominis 2140 species 0 1 76517 522485 1258 Campylobacter avium 0 1 species species 1 0 Campylobacter curvus 485 200 1670 Campylobacter cuniculorum 1 0 species 374106 198 species 1 0 Campylobacter hyointestinalis 2670 2691 Campylobacter concisus 1 0 species 199 species 0 1 Campylobacter coli 24621 195 28898 0 1 species 1026 Campylobacter helveticus 75658 Campylobacter lanienae 1843 species 0 1 196 4884 Campylobacter fetus 1 0 species 1 0 species 3929 Campylobacter insulaenigrae 260714 Campylobacter lari 7295 species 0 1 201 197 11161 Campylobacter jejuni 0 1 species 0 9 genus 6242 Sulfurospirillum 1 57665 50 65553 881 Sulfurospirillum deleyianum 0 1 species 2618290 2427 no rank 3 0 1581011 813 Sulfurospirillum sp. UCH001 1 0 species 862 Sulfurospirillum sp. JPD-1 0 1 species 220622 752 Sulfurospirillum sp. SL2-1 0 1 species 1986224 495 Sulfurospirillum halorespirans 0 1 species 194424 44674 576 Sulfurospirillum barnesii 0 1 species 66821 Sulfurospirillum multivorans 507 species 0 1 Sulfurospirillum cavolei 1306 species 0 1 366522 1 235899 4 2467 Nautiliales 0 5 order 527 family 1 0 2795691 269258 0 1 genus 527 2624044 527 no rank 0 1 387092 527 Nitratiruptor sp. SB155-2 0 1 species 0 3 family 1936 Nautiliaceae 1 224467 1 2 0 genus 1935 Nautilia 1 191291 5 1930 Nautilia profundicola 0 1 species 244787 0 128 class 156110 Deltaproteobacteria 28221 1 451 order 26 0 Desulfovibrionales 56372 414 1 213115 47439 Desulfovibrionaceae 18 0 family 1 194924 271 1 872 305 0 9 genus 35441 Desulfovibrio species 0 1 Desulfovibrio alaskensis 1981 58180 1 0 species 4654 Desulfovibrio vulgaris 881 7383 Desulfovibrio fairfieldensis 1 0 species 44742 876 0 1 species 6732 Desulfovibrio desulfuricans Desulfovibrio piger 5617 species 1 0 901 184917 2483 Desulfovibrio magneticus 0 1 species species 0 1 Candidatus Desulfovibrio trichonymphae 994 1725232 2593640 no rank 1 0 5292 0 1 species 5292 Desulfovibrio sp. G11 631220 86 2035811 1 Pseudodesulfovibrio 6287 genus 4 0 species 1 0 Pseudodesulfovibrio indicus 2830 1716143 182210 0 1 species 2166 Pseudodesulfovibrio aespoeensis 57320 1 0 species 1205 Pseudodesulfovibrio profundus 0 1 genus 1815 2582840 873 1815 Desulfovibrio africanus 0 1 species 0 2 genus 1811 Lawsonia 1 41707 7 29546 Lawsonia intracellularis 1804 species 0 1 1814 genus 1 0 2794998 880 species 0 1 Desulfovibrio salexigens 1814 family 0 4 Desulfomicrobiaceae 7609 38 1 213116 Desulfomicrobium 7571 genus 0 3 45 1 898 899 1 0 species 3750 Desulfomicrobium baculatum 132132 0 1 species 3776 Desulfomicrobium orale 4 1 213117 Desulfohalobiaceae 910 family 3 0 1 45662 2 906 Desulfohalobium 0 2 genus 45663 0 1 species 904 Desulfohalobium retbaense 1 453227 46 4 0 order 2154 Desulfarculales 10 1 453228 family 3 0 Desulfarculaceae 2108 Desulfarculus 2098 genus 2 0 22 1 453229 2076 Desulfarculus baarsii 1 0 species 453230 13835 Desulfobacterales 19 0 order 1 213118 122 34 1 213119 family 0 10 Desulfobacteraceae 8377 6 1 896 Desulfococcus 4046 genus 0 3 897 Desulfococcus multivorans 2412 species 0 1 181663 species 0 1 Desulfococcus oleovorans 1628 0 2 genus 1741 Desulfatibacillum 218207 1 1 1740 Desulfatibacillum alkenivorans 0 1 species 259354 4 1 28222 genus 2 0 Desulfobacula 1496 Desulfobacula toluolica 1492 species 0 1 28223 3 2295 1 Desulfobacterium 1060 genus 2 0 0 1 species 1057 Desulfobacterium autotrophicum 2296 1 213121 30 5336 Desulfobulbaceae 0 8 family 2 1 53318 Desulfocapsa 794 genus 0 2 1 0 species 792 Desulfocapsa sulfexigens 65555 1 0 genus 914 109168 84980 914 Desulfotalea psychrophila 1 0 species genus 2 0 Desulfobulbus 2044 11 1 893 1986146 Desulfobulbus sp. ORNL 2033 species 0 1 17 1 427922 genus 0 2 Desulfurivibrio 1554 1537 Desulfurivibrio alkaliphilus 1 0 species 427923 Syntrophobacterales 3579 order 10 0 59 1 213462 1 213465 35 1161 Syntrophobacteraceae 3 0 family 1 29526 8 1126 Syntrophobacter 2 0 genus 119484 species 0 1 Syntrophobacter fumaroxidans 1118 23 1 213468 Syntrophaceae 2359 family 0 6 2357 847 genus 1 0 2358 847 Desulfomonile tiedjei 1 0 species Desulfobacca 601 genus 0 2 5 1 60892 60893 species 1 0 Desulfobacca acetoxidans 596 9 1 43773 genus 0 2 Syntrophus 888 0 1 species 879 Syntrophus aciditrophicus 316277 29 1 602 46316 Myxococcales 0 38 order 3 0 suborder 2139 224462 Kofleriaceae 2139 family 0 3 24 1 224464 1 162027 50 0 2 genus 2115 Haliangium 0 1 species 2065 Haliangium ochraceum 80816 80811 26 0 suborder 35205 280 1 39 Archangiaceae 8973 family 9 0 1 47 67 2438 Archangium 0 2 genus Archangium gephyra 2371 species 1 0 48 genus 2 0 Melittangium 1939 10 1 44 83453 0 1 species 1929 Melittangium boletus genus 2 0 Cystobacter 2274 81 1 42 43 Cystobacter fuscus 2193 species 1 0 genus 2 0 Stigmatella 2042 31 1 40 species 0 1 Stigmatella aurantiaca 2011 41 10 1 1524213 Vulgatibacteraceae 1710 family 0 3 40 1 1524214 Vulgatibacter 1700 genus 0 2 1391653 Vulgatibacter incomptus 1660 species 1 0 Anaeromyxobacteraceae 7687 family 0 5 64 1 1524215 7623 Anaeromyxobacter 0 4 genus 161492 1 117 161493 Anaeromyxobacter dehalogenans 3451 species 0 1 2620896 0 2 no rank 4055 2196 Anaeromyxobacter sp. K 0 1 species 447217 1 0 species 1859 Anaeromyxobacter sp. Fw109-5 404589 191 31 1 family 9 0 Myxococcaceae 16835 1 32 543 5 0 genus 11272 Myxococcus 4395 Myxococcus fulvus 0 1 species 33 34 1998 Myxococcus xanthus 1 0 species 0 1 species 1816 Myxococcus stipitatus 83455 1297742 2520 Myxococcus hansupus 1 0 species 1 83461 168 0 3 genus 5372 Corallococcus 35 0 1 species 2399 Myxococcus macrosporus 184914 2805 Corallococcus coralloides 0 1 species 8370 0 8 suborder 80812 1 1055686 19 3 0 family 1591 Sandaracinaceae 0 2 genus 1572 Sandaracinus 1 1055688 14 1558 Sandaracinus amylolyticus 0 1 species 927083 family 0 5 Polyangiaceae 6779 36 49 1 40 1 39643 genus 0 2 Sorangium 5258 56 5218 Sorangium cellulosum 1 0 species 50 1 18 1485 Chondromyces 0 2 genus 52 species 0 1 Chondromyces crocatus 1467 order 0 6 Desulfurellales 5060 9 1 213113 7 1 117942 family 0 5 Desulfurellaceae 5051 215 1 33001 Desulfurella 3198 genus 2 0 2983 Desulfurella acetivorans 0 1 species 33002 genus 0 2 Hippea 1846 228 84404 1 Hippea maritima 1618 species 1 0 84405 1 69541 363 28343 Desulfuromonadales 0 24 order family 14 0 Geobacteraceae 18752 78 1 213422 Geoalkalibacter 1615 genus 2 0 4 1 392332 483547 species 1 0 Geoalkalibacter subterraneus 1611 11 0 genus 17059 Geobacter 1 28231 265 Geobacter sulfurreducens 1746 species 0 1 35554 2627627 4290 no rank 0 2 2583 Geobacter sp. M18 0 1 species 443143 443144 1707 Geobacter sp. M21 1 0 species 0 1 species 1979 Geobacter anodireducens 1340425 351604 Geobacter uraniireducens 1599 species 1 0 1662 Geobacter lovleyi 1 0 species 313985 1015 Geobacter metallireducens 1 0 species 28232 1203471 Geobacter daltonii 1269 species 1 0 345632 species 1 0 Geobacter pickeringii 1572 225194 species 0 1 Geobacter bemidjiensis 1662 179 1 213421 Desulfuromonadaceae 9228 family 0 9 1 18 74 5613 Pelobacter 0 5 genus Pelobacter propionicus 1992 species 0 1 29543 species 1 0 Pelobacter acetylenicus 1180 29542 19 Pelobacter carbinolicus 1286 species 1 0 no rank 1 0 1081 2620299 1842532 Pelobacter sp. SFB93 1081 species 0 1 1 890 24 0 3 genus 3436 Desulfuromonas no rank 1 0 1897 2614637 1823759 1 0 species 1897 Desulfuromonas sp. DDH964 species 1 0 Desulfuromonas soudanensis 1515 1603606 Alphaproteobacteria 460842 class 564 0 1642 1 28211 2800059 874 2 0 order 2 0 family 874 2800061 Maricaulis 874 genus 0 2 9 1 74317 74318 1 0 species 865 Maricaulis maris order 0 52 Rickettsiales 37627 52 766 1 0 22 family 17143 Anaplasmataceae 1 942 20 10852 Ehrlichia 6 0 genus 943 1 124 106178 9321 species group 4 0 2436 Ehrlichia muris 1 0 species 35795 Ehrlichia ruminantium 3485 species 0 1 779 944 0 1 species 1582 Ehrlichia canis 945 0 1 species 1818 Ehrlichia chaffeensis 1407 1 0 no rank 106181 391036 species 1 0 Ehrlichia sp. HF 1407 0 8 tribe 4722 952 1 953 56 8 0 genus 4722 Wolbachia 2640676 no rank 7 0 4666 163164 Wolbachia endosymbiont of Drosophila melanogaster 464 species 1 0 100901 569 Wolbachia endosymbiont of Onchocerca ochengi 1 0 species 77551 Wolbachia endosymbiont of Onchocerca volvulus 851 species 1 0 246273 Wolbachia endosymbiont of Cimex lectularius 272 species 1 0 66084 species 1 0 Wolbachia sp. wRi 1021 77038 Wolbachia endosymbiont of Drosophila simulans 1069 species 0 1 0 1 species 420 Wolbachia endosymbiont of Brugia malayi 80849 768 genus 0 3 622 species group 1 0 280 106179 0 1 species 280 Anaplasma phagocytophilum 948 769 1 0 species 176 Anaplasma centrale 770 species 1 0 Anaplasma marginale 166 0 4 genus 927 Neorickettsia 1 33993 2 591 Neorickettsia sennetsu 0 1 species 951 950 0 1 species 117 Neorickettsia risticii 33994 217 Neorickettsia helminthoeca 1 0 species 1699067 1912 1 0 no rank 1528098 1912 Rickettsiales bacterium Ac37b 1 0 species 22 775 1 family 27 0 Rickettsiaceae 17254 16212 tribe 0 25 33988 genus 0 2 Orientia 2628 2 69474 1 species 0 1 Orientia tsutsugamushi 2626 784 0 23 genus 13584 Rickettsia 1 780 1412 2892 0 2 species group 1129742 33990 species 0 1 Rickettsia bellii 1497 788 Rickettsia canadensis 1395 species 1 0 114277 0 17 species group 5113 226665 Rickettsia heilongjiangensis 60 species 0 1 35790 species 1 0 Rickettsia japonica 52 species 1 0 Rickettsia africae 91 35788 0 1 species 158 Rickettsia amblyommatis 33989 47589 species 1 0 Rickettsia peacockii 243 783 169 Rickettsia rickettsii 0 1 species 35794 0 1 species 45 Rickettsia slovaca 33991 species 0 1 Rickettsia montanensis 230 786 585 Rickettsia akari 1 0 species Rickettsia monacensis 725 species 1 0 109232 59 Rickettsia philipii 0 1 species 1105106 species 0 1 Rickettsia rhipicephali 741 33992 Rickettsia conorii 47 species 0 1 781 1 0 species 949 Rickettsia australis 787 42862 806 Rickettsia felis 0 1 species species 1 0 Rickettsia parkeri 33 35792 35791 120 Rickettsia massiliae 0 1 species 114295 no rank 1 0 1741 337479 species 1 0 Rickettsia endosymbiont of Bemisia tabaci 1741 2426 species group 0 2 114292 782 1 0 species 1167 Rickettsia prowazekii Rickettsia typhi 1259 species 1 0 785 2115980 0 1 genus 1020 species 1 0 Candidatus Phycorickettsia trachydisci 1020 2115978 1266 1 0 family 1328881 411566 1266 0 1 genus 234827 0 1 species 1266 Candidatus Midichloria mitochondrii 82117 4198 no rank 7 0 588 clade 0 1 62654 588 0 1 genus 767891 0 1 species 588 Candidatus Puniceispirillum marinum 767892 genus 0 2 Phreatobacter 1319 83 1 1632780 1868589 species 1 0 Phreatobacter sp. S-12 1236 1448 Polymorphum 2 0 genus 991903 1 18 Polymorphum gilvum 1430 species 0 1 991904 genus 2 0 Micavibrio 843 9 1 213485 349221 0 1 species 834 Micavibrio aeruginosavorus order 0 4 Magnetococcales 567 15 1 1191478 family 3 0 Magnetococcaceae 552 1 1191479 1 551 Magnetococcus 2 0 genus 162171 1 5 1124597 Magnetococcus marinus 546 species 1 0 1 204455 374 69091 Rhodobacterales 92 0 order family 0 91 Rhodobacteraceae 68717 1287 1 31989 265 1 245 0 9 genus 10297 Paracoccus 147645 0 1 species 1521 Paracoccus yeei no rank 1 0 842 246570 0 1 species 842 Paracoccus sp. BM15 1529068 34003 Paracoccus aminophilus 1109 species 0 1 species 0 1 Paracoccus denitrificans 1580 266 2065379 Paracoccus sp. CBA4604 1327 species 1 0 34004 1 0 species 1281 Paracoccus aminovorans 1077935 1446 Paracoccus zhejiangensis 0 1 species 1945662 Paracoccus contaminans 946 species 0 1 Ruegeria 2178 genus 0 3 7 1 97050 89184 Ruegeria pomeroyi 1229 species 1 0 942 1 0 no rank 2625375 0 1 species 942 Ruegeria sp. TM1040 292414 genus 3 0 Sulfitobacter 1898 20 1 60136 920 no rank 1 0 196795 1 0 species 920 Sulfitobacter sp. AM1-D1 1917485 1402135 958 Sulfitobacter pseudonitzschiae 0 1 species 1 302485 111 6873 Phaeobacter 5 0 genus 1844006 1 0 species 648 Phaeobacter porticola 1868 Phaeobacter piscinae 0 1 species 1580596 2499 Phaeobacter inhibens 0 1 species 221822 60890 1747 Phaeobacter gallaeciensis 1 0 species 800 0 1 genus 1649279 Ruegeria mobilis 800 species 1 0 379347 Labrenzia 3497 genus 4 0 72 478070 1 1 0 species 1299 Labrenzia aggregata 187304 2648686 2126 2 0 no rank Labrenzia sp. VG12 942 species 0 1 2021862 1674922 0 1 species 1184 Labrenzia sp. CP4 191028 1 14 1521 Leisingera 2 0 genus 133924 Leisingera methylohalidivorans 1507 species 1 0 3782 Celeribacter 0 5 genus 1 875170 28 1411902 1 0 species 1143 Celeribacter manganoxidans 1064 Celeribacter ethanolicus 1 0 species 1758178 1397108 0 1 species 454 Celeribacter marinus 1208324 species 1 0 Celeribacter indicus 1093 0 2 genus 1604 Marinovum 1 367771 31 Marinovum algicola 1573 species 0 1 42444 119541 526 genus 1 0 Rhodobaca barguzinensis 526 species 0 1 441209 2 0 genus 754 Roseovarius 1 74030 8 215743 1 0 species 746 Roseovarius mucosus 263377 2 0 genus 2798 Thiobacimonas profunda 1431 species 0 1 1229727 2640570 0 1 no rank 1367 1792508 0 1 species 1367 Yangia sp. CCB-MM3 genus 0 5 Rhodobacter 6000 93 1060 1 196779 0 2 no rank 1912 0 1 species 902 Rhodobacter sp. LPB0142 1850250 2033869 Rhodobacter sp. CZR27 1010 species 1 0 2674 Rhodobacter sphaeroides 0 1 species 1063 Rhodobacter capsulatus 1321 species 1 0 1061 4 1 285107 genus 0 2 Thioclava 1176 species 1 0 Thioclava nitratireducens 1172 1915078 3 1 1579315 genus 2 0 Halocynthiibacter 551 1579316 548 Halocynthiibacter arcticus 1 0 species genus 0 2 Confluentimicrobium 1198 5 1 1609958 no rank 1 0 1193 2643318 1609966 Confluentimicrobium sp. EMB200-NS6 1193 species 1 0 1995 Ketogulonicigenium 0 3 genus 1 92944 10 92945 1015 Ketogulonicigenium vulgare 1 0 species 1 0 species 970 Ketogulonicigenium robustum 92947 5 74032 1 genus 2 0 Antarctobacter 852 1 0 species 847 Antarctobacter heliothermus 74033 Tateyamaria 697 genus 2 0 1 1 299261 species 1 0 Tateyamaria omphalii 696 299262 25 1 227873 genus 0 2 Pannonibacter 2155 121719 0 1 species 2130 Pannonibacter phragmitetus 3 1 188905 genus 0 2 Jannaschia 1043 1040 0 1 no rank 2645469 290400 Jannaschia sp. CCS1 1040 species 1 0 genus 1 0 Thalassococcus 6 436357 0 2 genus 1324 Sagittula 1 58842 5 1319 no rank 0 1 2624628 2009329 Sagittula sp. P11 1319 species 1 0 2 0 genus 423 Marivivens 1759396 1 3 1 0 no rank 420 2622455 Marivivens sp. JLT3646 420 species 1 0 1920883 0 2 genus 1288 Pelagibaca 360528 1 20 Pelagibaca abyssi 1268 species 0 1 1250539 940 Roseibacterium 2 0 genus 159345 1 2 938 Roseibacterium elongatum 0 1 species 159346 245186 genus 0 1 Loktanella 3 4 0 genus 3735 Rhodovulum 1 34008 84 2631432 1769 no rank 0 2 1564506 Rhodovulum sp. P5 837 species 1 0 308754 932 Rhodovulum sp. MB263 0 1 species 35806 1882 Rhodovulum sulfidophilum 0 1 species 58840 no rank 2 0 1321 species 0 1 Rhodobacteraceae bacterium QY30 823 2033435 1904441 0 1 species 498 Rhodobacteraceae bacterium 1 0 genus 723 2211641 723 Loktanella vestfoldensis 0 1 species 245188 1 2433 1 0 3 genus 1139 Roseobacter 2434 0 1 species 528 Roseobacter denitrificans 42443 1 0 species 610 Roseobacter litoralis 10 1 53945 genus 4 0 Octadecabacter 1484 53946 species 1 0 Octadecabacter arcticus 671 1217908 1 0 species 474 Octadecabacter antarcticus 1 0 species 329 Octadecabacter temperatus 1458307 genus 2 0 Defluviimonas 1481 6 1 1097466 1335048 1475 Defluviimonas alba 1 0 species 2 0 genus 354 Planktomarina 1 1284657 2 Planktomarina temperata 352 species 1 0 1284658 309512 genus 0 1 1014 species 1 0 Dinoroseobacter shibae 1014 215813 1 204441 718 0 67 order 64012 Rhodospirillales 625 1 41295 Rhodospirillaceae 35832 family 0 31 1253 Candidatus Endolissoclinum 0 2 genus 1263978 1 1 1263979 0 1 species 1252 Candidatus Endolissoclinum faulkneri genus 0 5 Magnetospirillum 7940 151 1 13134 84159 1872 Magnetospirillum magneticum 1 0 species 55518 Magnetospirillum gryphiswaldense 2267 species 0 1 2617991 no rank 0 2 3650 1639348 Magnetospirillum sp. ME-1 1865 species 0 1 1663591 1 0 species 1785 Magnetospirillum sp. XM-1 12053 Azospirillum 0 5 genus 191 1 195 Azospirillum humicireducens 1183 species 1 0 1226968 1 0 species 3969 Azospirillum brasilense 192 528244 0 1 species 2615 Azospirillum thiophilum species 0 1 Azospirillum lipoferum 4091 193 3 0 genus 2871 Rhodospirillum 1081 1 34 1199 Rhodospirillum rubrum 0 1 species 1085 Rhodospirillum centenum 1638 species 0 1 34018 20 1804663 1 genus 2 0 Haematospirillum 476 0 1 species 456 Haematospirillum jordaniae 1549855 genus 2 0 Niveispirillum 2087 32 1 1543704 0 1 species 2055 Niveispirillum cyanobacteriorum 1612173 22 1 171436 genus 2 0 Tistrella 1888 0 1 species 1866 Tistrella mobilis 171437 53 1 168934 Thalassospira 2193 genus 0 3 Thalassospira sp. CSC3H3 1113 species 1 0 2048283 1027 Thalassospira xiamenensis 1 0 species 220697 1 1612157 22 1115 Pararhodospirillum 0 2 genus 1093 Pararhodospirillum photometricum 0 1 species 1084 1 1543705 15 2410 Nitrospirillum 0 2 genus 28077 species 0 1 Nitrospirillum amazonense 2395 genus 2 0 Magnetospira 921 4 1 1182780 2685734 917 1 0 no rank 1288970 0 1 species 917 Magnetospira sp. QH-2 family 0 35 Acetobacteraceae 27462 415 1 433 485 Parasaccharibacter 0 2 genus 1 1602345 1 1510841 484 Parasaccharibacter apium 1 0 species 1 153497 5 847 Kozakia 2 0 genus 153496 842 Kozakia baliensis 0 1 species 1 91914 2 663 Asaia 0 2 genus 91915 661 Asaia bogorensis 1 0 species 1396 Gluconacetobacter 0 2 genus 1 89583 6 33996 1390 Gluconacetobacter diazotrophicus 1 0 species 4119 Komagataeibacter 0 5 genus 1434011 1 112 species 1 0 Komagataeibacter europaeus 733 33995 Komagataeibacter xylinus 1660 species 0 1 28448 species 0 1 Komagataeibacter medellinensis 686 1177712 265960 0 1 species 928 Komagataeibacter nataicola 92 434 1 genus 8 0 Acetobacter 9348 species 0 1 Acetobacter pasteurianus 2742 438 Acetobacter senegalensis 1026 species 0 1 446692 151157 subgenus 1 0 798 Acetobacter aceti 798 species 1 0 435 1076596 species 0 1 Acetobacter persici 860 65959 1320 Acetobacter pomorum 0 1 species 104102 Acetobacter tropicalis 1627 species 1 0 species 0 1 Acetobacter oryzifermentans 883 1633874 39 364409 1 genus 2 0 Granulibacter 2081 364410 0 1 species 2042 Granulibacter bethesdensis 87 1 522 Acidiphilium 1807 genus 0 3 species 1 0 Acidiphilium cryptum 892 524 62140 1 0 species 828 Acidiphilium multivorum 2030 Gluconobacter 0 3 genus 1 441 45 318683 640 Gluconobacter albidus 1 0 species 442 Gluconobacter oxydans 1345 species 0 1 1 125216 57 0 3 genus 3512 Roseomonas 1841 1 0 no rank 2617492 0 1 species 1841 Roseomonas sp. FDAARGOS_362 2018065 Roseomonas gilardii 1614 species 0 1 257708 genus 0 2 Neoasaia 759 5 1 320496 320497 0 1 species 754 Neoasaia chiangmaiensis 2800060 2055 6 0 order family 0 6 Hyphomonadaceae 2055 30 1 69657 0 2 genus 756 Hirschia 1 2723 2 2724 Hirschia baltica 754 species 1 0 85 1 16 0 3 genus 1269 Hyphomonas 687 Hyphomonas neptunium 1 0 species 81032 2630699 566 no rank 0 1 1906738 566 Hyphomonas sp. Mor2 0 1 species 1 1 255473 Parvularculales 369 order 4 0 Parvularculaceae 368 family 3 0 9 1 255474 359 Parvularcula 0 2 genus 1 208215 6 208216 353 Parvularcula bermudensis 1 0 species 17223 Caulobacterales 20 0 order 1 204458 195 17028 Caulobacteraceae 19 0 family 76892 1 338 1 76890 29 1020 Asticcacaulis 2 0 genus Asticcacaulis excentricus 991 species 1 0 78587 genus 0 2 Phenylobacterium 1251 8 1 20 284016 species 1 0 Phenylobacterium zucineum 1243 81440 485 no rank 1 0 1759059 species 0 1 Caulobacteraceae bacterium OTSz_A_272 485 genus 6 0 Caulobacter 8139 120 75 1 1 0 species 1164 Caulobacter henricii 69395 1541 0 1 no rank 2648921 species 0 1 Caulobacter sp. K31 1541 366602 88688 1 0 species 1479 Caulobacter segnis 69666 1205 Caulobacter mirabilis 0 1 species 2630 Caulobacter vibrioides 0 1 species 155892 176 1 41275 Brevundimonas 5795 genus 0 7 2622653 3 0 no rank 2783 1827469 Brevundimonas sp. GW460-12-10-14-LB2 796 species 0 1 1007 Brevundimonas sp. DS20 1 0 species 1532555 0 1 species 980 Brevundimonas sp. LM2 1938605 Brevundimonas naejangsanensis 966 species 0 1 588932 species 0 1 Brevundimonas subvibrioides 954 74313 41276 Brevundimonas vesicularis 916 species 0 1 398 1 204457 Sphingomonadales 60275 order 0 82 family 0 59 Sphingomonadaceae 46002 631 1 41297 1 0 genus 791 2685927 1921510 Sphingomonas sp. JJ-A5 791 species 1 0 457 genus 1 0 2709685 266812 457 Sphingorhabdus flavimaris 1 0 species 2 0 genus 974 Rhizorhabdus 1 1649486 4 1850238 1 0 species 970 Rhizorhabdus dicambivorans 1 1434046 20 1256 Sphingorhabdus 3 0 genus 1236 no rank 0 2 2614947 591 Sphingorhabdus sp. YGSMI21 1 0 species 2077182 species 1 0 Sphingorhabdus sp. M41 645 1806885 0 15 genus 13978 Sphingomonas 1 13687 360 species 0 2 Sphingomonas wittichii 2138 1083 1 160791 1283312 1055 Sphingomonas sp. DC-6 0 1 strain 1549858 Sphingomonas taxi 909 species 1 0 397260 1105 Sphingomonas sanxanigenens 0 1 species 0 6 no rank 5645 196159 species 1 0 Sphingomonas sp. Cra20 874 1327635 1390395 Sphingomonas sp. LK11 1155 species 1 0 972 Sphingomonas sp. NIC1 0 1 species 1961362 0 1 species 821 Sphingomonas sp. LM7 1938607 1030157 species 0 1 Sphingomonas sp. KC8 896 745310 Sphingomonas sp. MM-1 927 species 0 1 species 1 0 Sphingomonas koreensis 968 93064 1609977 Sphingomonas hengshuiensis 1050 species 0 1 1 0 species 980 Sphingomonas melonis 152682 1560345 Sphingomonas panacis 823 species 0 1 2 0 genus 894 Citromicrobium 1 72173 27 2630544 867 0 1 no rank Citromicrobium sp. JL477 867 species 1 0 1634516 genus 5 0 Novosphingobium 4301 72 1 165696 2644732 1095 no rank 1 0 Novosphingobium sp. PP1Y 1095 species 0 1 702113 1 0 species 800 Novosphingobium aromaticivorans 48935 species 1 0 Novosphingobium resinovorum 1297 158500 205844 0 1 species 1037 Novosphingobium pentaromativorans 1 150203 18 2 0 genus 1104 Blastomonas no rank 1 0 1086 2626550 1 0 species 1086 Blastomonas sp. RAC04 1842535 genus 15 0 Sphingobium 12941 293 1 165695 no rank 6 0 5294 2611147 484429 Sphingobium sp. YBL2 1073 species 1 0 627192 Sphingobium sp. SYK-6 896 species 0 1 1843368 892 Sphingobium sp. RAC03 0 1 species Sphingobium sp. MI1205 635 species 1 0 407020 1 0 species 1175 Sphingobium sp. TKS 1315974 1855519 Sphingobium sp. EP60837 623 species 0 1 120107 Sphingobium cloacae 851 species 1 0 1673076 0 1 species 939 Sphingobium hydrophobicum 0 1 species 631 Sphingobium herbicidovorans 76947 1 0 species 835 Sphingobium baderi 1332080 13690 1024 Sphingobium yanoikuyae 1 0 species 332055 1 0 species 921 Sphingobium indicum 1 0 species 1006 Sphingobium japonicum 332056 species 0 1 Sphingobium chlorophenolicum 1147 46429 genus 0 10 Sphingopyxis 7162 189 1 165697 species 1 0 Sphingopyxis fribergensis 712 1515612 0 1 species 633 Sphingopyxis terrae 33052 Sphingopyxis alaskensis 700 species 0 1 117207 1428 Sphingopyxis macrogoltabida 1 0 species 33050 672 Sphingopyxis granuli 1 0 species 267128 0 4 no rank 2828 2614943 292913 611 Sphingopyxis sp. 113P3 1 0 species 1913578 662 Sphingopyxis sp. LPB0140 0 1 species 858 Sphingopyxis sp. QXT-31 1 0 species 1357916 Sphingopyxis sp. MG 697 species 0 1 1866325 0 2 genus 1513 Zymomonas 1 541 22 542 1491 Zymomonas mobilis 0 1 species 221 1 335929 Erythrobacteraceae 13875 family 0 22 2800685 genus 1 0 891 species 1 0 Altererythrobacter marensis 891 543877 2800681 genus 2 0 1492 385 Erythrobacter atlanticus 0 1 species 1648404 1107 Erythrobacter gangjinensis 0 1 species 502682 2800682 genus 0 1 785 645517 785 Altererythrobacter namhicola 1 0 species 1 1295327 84 0 3 genus 2399 Croceicoccus 450378 1406 Croceicoccus marinus 1 0 species 1348774 Croceicoccus naphthovorans 909 species 0 1 1236 genus 0 2 1855416 266951 species 1 0 Erythrobacter seohaensis 451 192812 785 Erythrobacter flavus 0 1 species Altererythrobacter 1560 genus 4 0 103 1 361177 476157 Altererythrobacter ishigakiensis 390 species 0 1 1267766 species 0 1 Altererythrobacter atlanticus 625 0 1 species 442 Altererythrobacter epoxidivorans 361183 4289 no rank 0 6 2800788 1 1041 164 2388 Erythrobacter 3 0 genus 1112 species 0 1 Porphyrobacter neustonensis 853 0 1 species 1371 Erythrobacter litoralis 39960 1901 Porphyrobacter 0 3 genus 1 1111 82 2683265 1819 no rank 0 2 Porphyrobacter sp. LM 6 925 species 1 0 1896196 2023229 894 Porphyrobacter HT-58-2 0 1 species 2800686 2 0 genus 1002 1 0 species 426 Altererythrobacter mangrovi 1982042 692370 1 0 species 576 Altererythrobacter dongtanensis 1 54526 23 9814 Pelagibacterales 0 8 order Candidatus Fonsibacter 2271 genus 0 2 3 2045213 1 1925548 species 0 1 Candidatus Fonsibacter ubiquis 2268 1 1655514 9 0 5 family 7520 Pelagibacteraceae 198251 3543 2 0 genus species 1 0 Candidatus Pelagibacter ubique 2099 198252 2647897 no rank 0 1 1444 1002672 1444 Candidatus Pelagibacter sp. IMCC9063 1 0 species 3968 no rank 2 0 1655516 744985 1337 alpha proteobacterium HIMB59 0 1 species 1 0 species 2631 alpha proteobacterium HIMB5 859653 1 356 1645 211 0 order 191033 Rhizobiales 23 1 2036754 family 0 4 Chelatococcaceae 2771 2748 Chelatococcus 3 0 genus 1 28209 69 2638111 0 1 no rank 1621 0 1 species 1621 Chelatococcus sp. CO-6 1702325 Chelatococcus daeguensis 1058 species 1 0 444444 19 0 family 12404 Hyphomicrobiaceae 45401 1 106 1 46913 101 4 0 genus 3814 Devosia 3713 no rank 0 3 196773 species 0 1 Devosia sp. A16 1530 1736675 species 0 1 Devosia sp. I507 992 2083786 1643450 Devosia sp. H5989 1191 species 0 1 Hyphomicrobium 3786 genus 4 0 34 1 81 2619925 1145 1 0 no rank 717785 Hyphomicrobium sp. MC1 1145 species 1 0 1427356 0 1 species 1194 Hyphomicrobium nitrativorans 53399 0 1 species 1413 Hyphomicrobium denitrificans 9 1 1068 Rhodomicrobium 786 genus 0 2 1069 species 0 1 Rhodomicrobium vannielii 777 1 1082930 11 737 Pelagibacterium 0 2 genus 531813 1 0 species 726 Pelagibacterium halotolerans Blastochloris 1234 genus 0 2 21 1 59282 Blastochloris viridis 1213 species 1 0 1079 561 Filomicrobium 2 0 genus 1 119044 3 0 1 species 558 Candidatus Filomicrobium marinum 1608628 1 29407 23 0 2 genus 1380 Rhodoplanes 1357 0 1 no rank 2619116 674703 1357 Rhodoplanes sp. Z2-YC6860 1 0 species 18 0 family 20018 Bartonellaceae 1 772 28 232 1 773 Bartonella 19990 genus 0 17 1318743 1433 Bartonella ancashensis 1 0 species 388640 species 0 1 Bartonella australis 967 85701 2192 Bartonella tribocorum 0 1 species species 1 0 Bartonella henselae 955 38323 664 Bartonella bacilliformis 0 1 species 774 Bartonella apis 1739 species 0 1 1686310 species 0 1 Bartonella clarridgeiae 1053 56426 33045 1 0 species 2113 Bartonella grahamii 0 1 species 1035 Bartonella vinsonii 33047 2645622 no rank 6 0 6466 0 1 species 958 Bartonella sp. A1379B 1933910 515256 species 0 1 Bartonella sp. 1-1C 1147 1 0 species 680 Bartonella sp. WD16.2 1933904 1933907 species 0 1 Bartonella sp. JB63 1344 1933912 994 Bartonella sp. Raccoon60 1 0 species 1933906 1343 Bartonella sp. JB15 0 1 species 803 species 1 0 Bartonella quintana 1141 0 7 family 4701 Xanthobacteraceae 1 335928 53 1464 Xanthobacter 0 2 genus 1 279 35 280 1 0 species 1429 Xanthobacter autotrophicus Starkeya 1450 genus 2 0 38 1 152053 921 1 0 species 1412 Starkeya novella 0 2 genus 1734 Azorhizobium 1 6 23 1711 Azorhizobium caulinodans 0 1 species 7 821 Rhodobiaceae 3 0 family 1 119043 4 20 1 256616 genus 0 2 Parvibaculum 817 Parvibaculum lavamentivorans 797 species 1 0 256618 7975 Brucellaceae 0 20 family 1 118882 83 genus 5 0 Ochrobactrum 4259 68 1 528 750 Ochrobactrum pituitosum 0 1 species 571256 271865 0 1 species 1747 Ochrobactrum sp. A44 Ochrobactrum anthropi 873 species 1 0 529 0 1 species 821 Ochrobactrum pseudogrignonense 419475 1454 1 234 Brucella 3633 genus 0 14 1 0 species 75 Brucella melitensis 29459 36855 0 1 species 175 Brucella canis 120576 168 Brucella pinnipedialis 0 1 species 54 Brucella abortus 1 0 species 235 Brucella microti 46 species 0 1 444163 981386 1 0 species 280 Brucella vulpis 120577 species 0 1 Brucella ceti 201 1 0 species 78 Brucella suis 29461 236 34 Brucella ovis 0 1 species no rank 4 0 1068 2632610 1891098 species 0 1 Brucella sp. 2002734562 37 1885919 Brucella sp. 141012304 351 species 0 1 1149952 species 0 1 Brucella sp. 09RB8471 334 346 Brucella sp. 09RB8910 0 1 species 1844051 family 5 0 Beijerinckiaceae 1291 1 1 45404 2 0 genus 429 Beijerinckia 1 532 7 533 species 1 0 Beijerinckia indica 422 17 1 120652 genus 0 2 Methylocella 861 199596 Methylocella silvestris 844 species 0 1 0 54 family 60457 Rhizobiaceae 1 82115 570 227290 42278 no rank 35 0 28881 Rhizobium 26 0 genus 1 379 1937 384 0 1 species 6775 Rhizobium leguminosarum species 1 0 Rhizobium gallicum 1560 56730 29449 Rhizobium etli 3319 species 1 0 no rank 0 20 12328 2613769 1703965 Rhizobium sp. N6212 4 species 1 0 1703969 species 1 0 Rhizobium sp. N324 1122 1200 Rhizobium sp. 10195 1 0 species 2028343 3 Rhizobium sp. N113 1 0 species 1703960 2020311 0 1 species 695 Rhizobium sp. Kim5 species 0 1 Rhizobium sp. TAL182 186 2020313 1703962 6 Rhizobium sp. N1341 0 1 species 153 Rhizobium sp. N731 0 1 species 1703966 424182 species 1 0 Rhizobium sp. IRBG74 968 1571470 1 0 species 1244 Rhizobium sp. ACO-34A species 0 1 Rhizobium sp. S41 1000 1869170 1703964 Rhizobium sp. N621 4 species 1 0 1301032 Rhizobium sp. IE4771 890 species 0 1 1 0 species 153 Rhizobium sp. N1314 1703961 1914541 1029 Rhizobium sp. Y9 1 0 species 1703967 6 Rhizobium sp. N741 1 0 species 1981173 1 0 species 757 Rhizobium sp. NXC14 2048897 1 0 species 974 Rhizobium sp. NXC24 2020312 1 0 species 1100 Rhizobium sp. CIAT894 834 Rhizobium sp. NT-26 0 1 species 1125847 967 Rhizobium tropici 0 1 species 398 396 1995 Rhizobium phaseoli 1 0 species 177 357 1 Agrobacterium 11164 genus 7 0 0 1 species 1227 Agrobacterium rhizogenes 359 0 2 no rank 2355 2632611 0 1 species 1096 Agrobacterium sp. H13-3 861208 Agrobacterium sp. RAC06 1259 species 1 0 1842536 373 species 1 0 Agrobacterium vitis 1218 species group 0 2 6187 1183400 358 0 1 species 4940 Agrobacterium tumefaciens Agrobacterium fabrum 1247 species 0 1 1176649 2 0 genus 2233 Neorhizobium 1 1525371 25 399 0 1 species 2208 Neorhizobium galegae 10 0 no rank 12483 227292 genus 7 0 Sinorhizobium 10286 234 1 28105 663276 0 1 species group 2613 380 2613 Sinorhizobium fredii 1 0 species 1 0 species 1540 Sinorhizobium americanum 194963 2613772 2412 2 0 no rank 794846 Sinorhizobium sp. CCBAU 05631 970 species 0 1 Sinorhizobium sp. RAC02 1442 species 1 0 1842534 Sinorhizobium medicae 984 species 1 0 110321 382 species 0 1 Sinorhizobium meliloti 2503 5 1 106591 Ensifer 2197 genus 0 3 1109 Ensifer sojae 1 0 species 716925 species 0 1 Ensifer adhaerens 1083 106592 94 1 323620 Shinella 1738 genus 2 0 0 1 no rank 1644 2643062 879274 1644 Shinella sp. HZN7 1 0 species genus 0 6 Liberibacter 3388 28 34019 1 0 1 species 489 Candidatus Liberibacter americanus 309868 34020 species 1 0 Candidatus Liberibacter africanus 902 34021 0 1 species 286 Candidatus Liberibacter asiaticus Liberibacter crescens 1218 species 1 0 1273132 556287 0 1 species 465 Candidatus Liberibacter solanacearum Phyllobacteriaceae 16930 family 0 20 230 1 69277 2 1 274591 Hoeflea 1032 genus 2 0 0 1 no rank 1030 2614931 1620421 Hoeflea sp. IMCC20628 1030 species 0 1 1 28100 16 2 0 genus 889 Phyllobacterium 1 0 species 873 Phyllobacterium zundukense 1867719 11645 Mesorhizobium 0 9 genus 1 68287 357 536018 1156 Mesorhizobium australicum 1 0 species 1670800 Mesorhizobium sp. B7 930 species 0 1 1993 Mesorhizobium ciceri 0 1 species 39645 species 0 1 Mesorhizobium amorphae 1451 71433 Mesorhizobium japonicum 1304 species 0 1 2066070 1396 0 1 no rank 325217 278153 0 1 species 1396 Mesorhizobium sp. WSM1497 1393 Mesorhizobium opportunistum 0 1 species 593909 381 species 1 0 Mesorhizobium loti 1665 2 0 genus 844 Nitratireductor 1 245876 18 0 1 species 826 Nitratireductor basaltis 472175 449972 1 16 836 Chelativorans 0 2 genus 820 0 1 no rank 2643807 Chelativorans sp. BNC1 820 species 0 1 266779 1454 Aminobacter 0 2 genus 1 31988 16 83263 species 1 0 Aminobacter aminovorans 1438 family 7 0 Aurantimonadaceae 5864 35 1 255475 1 293088 114 4609 Martelella 0 4 genus 1524 1 0 no rank 2629616 1 0 species 1524 Martelella sp. AD-3 686597 293089 species 1 0 Martelella mediterranea 1390 1486262 0 1 species 1581 Martelella endophytica 1 414371 20 0 2 genus 1220 Aureimonas 2615206 no rank 0 1 1200 1200 Aureimonas sp. AU20 0 1 species 1349819 96 1 119045 Methylobacteriaceae 18905 family 15 0 1 186650 23 1384 Microvirga 2 0 genus species 0 1 Microvirga ossetica 1361 1882682 596 407 1 Methylobacterium 10544 genus 9 0 114616 1 0 species 1258 Methylobacterium nodulans 270351 species 1 0 Methylobacterium aquaticum 2170 31998 species 1 0 Methylobacterium radiotolerans 1067 966 Methylobacterium oryzae 0 1 species 334852 1 0 species 1028 Methylobacterium phyllosphaerae 418223 3459 no rank 0 3 2615210 1162 Methylobacterium sp. AMS5 1 0 species 925818 species 0 1 Methylobacterium sp. 4-46 1289 426117 Methylobacterium sp. C1 1008 species 0 1 1479019 0 3 genus 6881 2282523 Methylobacterium zatmanii 1002 species 0 1 29429 408 1 0 species 3662 Methylobacterium extorquens 223967 2217 Methylobacterium populi 1 0 species Methylocystaceae 2366 family 6 0 10 1 31993 genus 3 0 Methylocystis 1524 34 1 133 655015 Methylocystis bryophila 668 species 1 0 0 1 no rank 822 2625913 0 1 species 822 Methylocystis sp. SC2 187303 Methylosinus 832 genus 2 0 14 1 425 426 0 1 species 818 Methylosinus trichosporium 31549 Bradyrhizobiaceae 0 26 family 41294 1 408 Rhodopseudomonas 7289 genus 2 0 83 1 1073 Rhodopseudomonas palustris 7206 species 0 1 1076 131 1 85413 genus 0 5 Bosea 4988 3608 no rank 3 0 2653178 species 1 0 Bosea sp. AS-1 1097 2015316 species 0 1 Bosea sp. PAMC 26642 1229 1792307 Bosea sp. RAC05 1282 species 1 0 1842539 species 1 0 Bosea vaviloviae 1249 1526658 Variibacter 635 genus 2 0 26 1 1649510 1333996 1 0 species 609 Variibacter gotjawalensis 524 1 374 Bradyrhizobium 15834 genus 11 0 1355477 2183 Bradyrhizobium diazoefficiens 0 1 species 8258 6 0 no rank 2631580 species 1 0 Bradyrhizobium sp. CCGE-LA001 1178 1223566 114615 species 1 0 Bradyrhizobium sp. ORS 278 1595 376 species 0 1 Bradyrhizobium sp. 1192 288000 1 0 species 1404 Bradyrhizobium sp. BTAi1 2057741 1483 Bradyrhizobium sp. SK17 1 0 species Bradyrhizobium sp. ORS 285 1406 species 1 0 115808 44255 1 0 species 1514 Bradyrhizobium oligotrophicum 1274631 species 0 1 Bradyrhizobium icense 1085 375 2270 Bradyrhizobium japonicum 1 0 species 26 1 911 genus 0 3 Nitrobacter 1480 912 862 Nitrobacter hamburgensis 1 0 species Nitrobacter winogradskyi 592 species 1 0 913 genus 2 0 Oligotropha 915 14 1 40136 Oligotropha carboxidovorans 901 species 1 0 40137 3336 0 6 no rank 119042 genus 2 0 Hartmannibacter 1393 19 1 1572860 1374 Hartmannibacter diazotrophicus 1 0 species 1482074 genus 0 2 Methyloceanibacter 802 18 1 1484898 0 1 species 784 Methyloceanibacter caenitepidi 1384459 2 0 genus 1141 Pseudorhodoplanes 1734920 1 29 1235591 1112 Pseudorhodoplanes sinuspersici 1 0 species 0 8 order 2062 Holosporales 1 1921002 6 1 1777752 1 2 0 family 280 Candidatus Paracaedibacteraceae 1521255 279 1 0 genus 279 Candidatus Paracaedibacter acanthamoebae 1 0 species 91604 Holosporaceae 1248 family 0 2 6 1 44746 204454 1242 0 1 no rank endosymbiont of Acanthamoeba sp. UWC8 1242 species 0 1 86106 Caedimonadaceae 528 family 3 0 1 1 2100208 genus 0 2 Candidatus Nucleicultrix 527 1 1 1509243 Candidatus Nucleicultrix amoebiphila 526 species 1 0 1509244 1 580370 1 6 0 class 1829 Zetaproteobacteria 1828 Mariprofundales 0 5 order 1 580371 10 2 580372 1 Mariprofundaceae 1818 family 0 4 genus 0 3 Mariprofundus 1816 7 1 377315 1921087 species 1 0 Mariprofundus ferrinatatus 713 1921086 Mariprofundus aestuarium 1096 species 0 1 1 1236 1886 891 0 class 894522 Gammaproteobacteria 33811 0 2 no rank 1988 1248727 species 1 0 endosymbiont of unidentified scaly snail isolate Monju 995 83406 0 1 species 993 gamma proteobacterium HdN1 1 135615 2 488 Cardiobacteriales 0 3 order 868 family 0 2 486 genus 2 0 Dichelobacter 486 2 869 1 Dichelobacter nodosus 484 species 1 0 870 1 91347 1133 316215 Enterobacterales 247 0 order Pectobacteriaceae 19768 family 0 20 59 1 1903410 7386 Dickeya 0 6 genus 1 204037 264 1313 Dickeya dadantii 0 1 species 204038 1089444 2283 Dickeya solani 1 0 species 204039 1 0 species 1092 Dickeya dianthicola 204042 1417 Dickeya zeae 0 1 species Dickeya fangzhongdai 1017 species 1 0 1778540 1 84565 66 0 5 genus 3476 Sodalis 1239307 1285 Sodalis praecaptivus 1 0 species species 1 0 Sodalis endosymbiont of Henestaris halophilus 234 1929246 1486991 Candidatus Sodalis pierantonius 905 species 0 1 63612 species 1 0 Sodalis glossinidius 986 214 122277 1 Pectobacterium 7331 genus 6 0 29471 species 1 0 Pectobacterium atrosepticum 753 714 Pectobacterium wasabiae 1 0 species 55208 1905730 1 0 species 830 Pectobacterium parmentieri 2042057 species 1 0 Pectobacterium polaris 1476 3344 Pectobacterium carotovorum 1 0 species 554 1 71655 7 1516 Brenneria 0 2 genus species 1 0 Brenneria goodwinii 1509 1109412 1 1903409 134 0 28 family 39718 Erwiniaceae 2100764 2 0 genus 2493 1205 Pantoea gaviniae 0 1 species 665914 1 0 species 1288 Pantoea calida 665913 490 Tatumella 0 2 genus 1 82986 12 53336 Tatumella citrea 478 species 1 0 1 1 51228 genus 0 2 Wigglesworthia 2851 Wigglesworthia glossinidia 2850 species 0 1 51229 Pantoea 11232 genus 11 0 357 1 53335 66269 Pantoea stewartii 655 species 1 0 981 Pantoea ananatis 0 1 species 553 1076550 650 Pantoea rwandensis 1 0 species species group 1 0 1374 1654067 549 species 1 0 Pantoea agglomerans 1374 2630326 3197 3 0 no rank 1484158 1058 Pantoea sp. PSNIH1 0 1 species Pantoea sp. At-9b 817 species 0 1 592316 1484157 Pantoea sp. PSNIH2 1322 species 0 1 906 Pantoea alhagi 1 0 species 1891675 1235990 0 1 species 1653 Candidatus Pantoea carbekii 470934 1459 Pantoea vagans 1 0 species 212 1 551 genus 0 8 Erwinia 5883 552 species 1 0 Erwinia amylovora 599 920 Erwinia tasmaniensis 1 0 species 338565 1 0 no rank 596 2622719 1 0 species 596 Erwinia sp. Ejp617 215689 0 1 species 1026 Erwinia gerundensis 1619313 79967 1 0 species 500 Erwinia pyrifoliae 182337 Erwinia billingiae 1396 species 1 0 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 634 species 1 0 genus 0 2 Buchnera 16635 9 1 32199 9 16626 Buchnera aphidicola 1 0 species 1 1903411 118 0 39 family 44031 Yersiniaceae 1 629 150 11329 Yersinia 0 13 genus no rank 1 0 643 2653513 1839800 species 0 1 Yersinia sp. FDAARGOS_228 643 0 1 species 523 Yersinia aleksiciae 263819 1 0 species 501 Yersinia kristensenii 28152 29486 1 0 species 512 Yersinia ruckeri 630 2381 Yersinia enterocolitica 1 0 species species 1 0 Yersinia rohdei 561 29485 29483 Yersinia aldovae 393 species 0 1 1649845 species group 0 3 3028 Yersinia pseudotuberculosis 1188 species 1 0 633 species 1 0 Yersinia similis 1026 367190 species 0 1 Yersinia pestis 814 632 29484 1771 Yersinia frederiksenii 0 1 species 631 0 1 species 866 Yersinia intermedia 16 0 genus 27239 Serratia 1 613 1045 614 0 1 species 1084 Serratia liquefaciens species 0 1 Serratia ficaria 1788 61651 47917 species 0 1 Serratia fonticola 2556 2647522 9330 no rank 8 0 1327989 species 1 0 Serratia sp. FS14 1663 488142 species 0 1 Serratia sp. SCBI 1183 species 0 1 Serratia sp. AS13 816 768493 768490 816 Serratia sp. AS12 1 0 species 104623 971 Serratia sp. ATCC 39006 1 0 species 2033438 1236 Serratia sp. MYb239 1 0 species 1380 Serratia sp. SSNIH1 1 0 species 1758196 671990 1265 Serratia sp. FGI94 0 1 species 82996 3031 Serratia plymuthica 1 0 species 28151 species 0 1 Serratia proteamaculans 776 615 species 0 1 Serratia marcescens 6097 61652 species 0 1 Serratia rubidaea 1532 Chania 997 genus 0 2 3 1745211 1 Chania multitudinisentens 994 species 0 1 1639108 1565532 26 Rouxiella 1 0 genus 1 34037 57 4 0 genus 2806 Rahnella 34038 species 0 1 Rahnella aquatilis 838 2 0 no rank 1911 2635087 1111 Rouxiella sp. ERMR1:05 0 1 species 1805933 0 1 species 800 Rahnella sp. Y9602 741091 9 929812 1 genus 2 0 Gibbsiella 1516 929813 species 1 0 Gibbsiella quercinecans 1507 no rank 2 0 913 451511 1 702 21 913 Plesiomonas 0 2 genus 703 892 Plesiomonas shigelloides 0 1 species 0 22 family 16570 Morganellaceae 1903414 1 41 genus 0 4 Photorhabdus 2394 34 1 29487 29488 Photorhabdus luminescens 747 species 1 0 574560 species 1 0 Photorhabdus temperata 668 Photorhabdus asymbiotica 945 species 1 0 291112 1 581 54 1832 Morganella 2 0 genus 582 0 1 species 1778 Morganella morganii 1 637 57 1809 Arsenophonus 0 2 genus species 1 0 Arsenophonus symbiont of Lipoptena fortisetosa 1752 634113 1 626 13 6 0 genus 3268 Xenorhabdus 1219 Xenorhabdus bovienii 1 0 species 40576 518 Xenorhabdus nematophila 1 0 species 628 351671 357 Xenorhabdus doucetiae 1 0 species 40577 Xenorhabdus poinarii 650 species 1 0 351679 Xenorhabdus hominickii 511 species 1 0 Providencia 3494 genus 0 4 19 586 1 species 1 0 Providencia alcalifaciens 618 126385 Providencia stuartii 1676 species 1 0 588 species 1 0 Providencia rettgeri 1181 587 3732 Proteus 0 3 genus 1 583 22 584 species 0 1 Proteus mirabilis 2363 585 1347 Proteus vulgaris 1 0 species family 119 0 Enterobacteriaceae 182745 1142 543 1 773 Candidatus Riesia 2 0 genus 1 401618 10 401619 763 Candidatus Riesia pediculicola 0 1 species 165 1 620 genus 4 0 Shigella 2841 Shigella flexneri 580 species 1 0 623 2629414 1 0 no rank 761 0 1 species 761 Shigella sp. PAMC 28760 1813821 species 0 1 Shigella dysenteriae 1335 622 1 1330545 14 4 0 genus 3236 Lelliottia 1907578 0 1 species 922 Lelliottia jeotgali 61646 Lelliottia amnigena 1233 species 1 0 69220 1067 Lelliottia nimipressuralis 1 0 species 1 158483 10 0 2 genus 2922 Cedecea 158822 0 1 species 2912 Cedecea neteri 5 0 no rank 5565 36866 1920128 Enterobacteriaceae bacterium ENNIH3 1110 species 0 1 2066051 Enterobacteriaceae bacterium ENNIH1 992 species 0 1 693444 Enterobacteriaceae bacterium strain FGI 57 1141 species 0 1 891974 Plautia stali symbiont 1082 species 1 0 1920109 1240 Enterobacteriaceae bacterium ENNIH2 1 0 species genus 3 0 Pluralibacter 3844 28 1 1330546 1334193 1306 [Enterobacter] lignolyticus 1 0 species Pluralibacter gergoviae 2510 species 0 1 61647 1 160674 91 7710 Raoultella 0 3 genus 575 species 1 0 Raoultella planticola 1545 1 0 species 6074 Raoultella ornithinolytica 54291 1 547 1475 31132 Enterobacter 0 22 genus 0 12 species group 22526 354276 2426 Enterobacter asburiae 1 0 species 61645 2757714 no rank 0 3 2031 2027919 1 0 species 825 Enterobacter cloacae complex bacterium 2077137 1 0 species 648 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1915310 1 0 species 558 Enterobacter cloacae complex sp. ECNIH7 species 0 3 Enterobacter hormaechei 6213 3563 1 158836 1296536 subspecies 0 1 Enterobacter xiangfangensis 1568 1812934 1082 Enterobacter cloacae complex 'Hoffmann cluster III' 0 1 subspecies 208224 species 0 1 Enterobacter kobei 656 299767 species 0 1 Enterobacter ludwigii 745 550 0 1 species 8834 Enterobacter cloacae 69218 1 0 species 1075 Enterobacter cancerogenus 546 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1 species 1812935 2608935 9 0 no rank 7131 Enterobacter sp. SA187 1117 species 0 1 1914861 1868135 species 0 1 Enterobacter sp. HK169 528 1166130 1 0 species 842 Enterobacter sp. R4-368 1529 Enterobacter sp. CRENT-193 0 1 species 2051905 species 0 1 Enterobacter sp. E20 404 1560339 399742 species 0 1 Enterobacter sp. 638 750 1977566 0 1 species 397 Enterobacter sp. Crenshaw 1692238 1 0 species 911 Enterobacter sp. FY-07 0 1 species 653 Enterobacter sp. ODB01 1827481 23397 Citrobacter 14 0 genus 1 544 486 7 0 species group 15416 1344959 1 0 species 1160 Citrobacter freundii complex sp. CFNIH3 2077147 species 0 1 Citrobacter freundii 6380 546 species 1 0 Citrobacter braakii 1977 57706 0 1 species 1430 Citrobacter freundii complex sp. CFNIH4 2077148 2102 Citrobacter freundii complex sp. CFNIH9 0 1 species 2077149 1 0 species 860 Citrobacter freundii complex sp. CFNIH2 2066049 0 1 species 1507 Citrobacter werkmanii 67827 35703 1 0 species 2767 Citrobacter amalonaticus 0 1 species 997 Citrobacter farmeri 67824 Citrobacter rodentium 1157 species 1 0 67825 1510 no rank 2 0 2644389 1702170 Citrobacter sp. FDAARGOS_156 791 species 1 0 Citrobacter sp. CFNIH10 719 species 0 1 1920110 545 1064 Citrobacter koseri 1 0 species 1335483 1 2 842 Shimwellia 2 0 genus 563 840 Shimwellia blattae 0 1 species 1 590 8 3 0 genus 6822 Salmonella species 1 0 Salmonella bongori 771 54736 28901 1 0 species 6043 Salmonella enterica Leclercia 3718 genus 0 4 114 1 83654 0 2 no rank 2436 2627398 1920116 1211 Leclercia sp. LSNIH3 0 1 species 1225 Leclercia sp. LSNIH1 0 1 species 1920114 Leclercia adecarboxylata 1168 species 1 0 83655 801 genus 1 0 579 61648 801 Kluyvera intermedia 1 0 species Escherichia 17191 genus 5 0 99 1 561 562 species 0 1 Escherichia coli 14231 564 1 0 species 676 Escherichia fergusonii 208962 Escherichia albertii 1428 species 1 0 1499973 Escherichia marmotae 757 species 0 1 10 0 genus 47024 Klebsiella 1 570 870 571 Klebsiella oxytoca 5607 species 0 1 1134687 species 1 0 Klebsiella michiganensis 3025 3150 Klebsiella quasipneumoniae 0 1 species 1463165 3702 Klebsiella aerogenes 1 0 species 548 573 17606 Klebsiella pneumoniae 1 0 species 244366 Klebsiella variicola 7450 species 1 0 2608929 2 0 no rank 3718 1 0 species 1691 Klebsiella sp. LTGPAF-6F 1905288 species 1 0 Klebsiella sp. M5al 2027 1934254 species 0 1 Klebsiella quasivariicola 1896 2026240 0 8 genus 8075 Cronobacter 1 413496 207 Cronobacter condimenti 1209 species 1 0 1163710 28141 Cronobacter sakazakii 1500 species 1 0 species 1 0 Cronobacter universalis 943 535744 413497 species 1 0 Cronobacter dublinensis 1049 species 1 0 Cronobacter muytjensii 1327 413501 species 1 0 Cronobacter malonaticus 868 413503 Cronobacter turicensis 972 species 0 1 413502 40 1 1330547 genus 0 5 Kosakonia 4755 283686 Kosakonia radicincitans 1448 species 1 0 1038 Kosakonia oryzae 1 0 species 497725 1 0 species 1406 Kosakonia cowanii 208223 1158459 1 0 species 823 Kosakonia sacchari 1524 Candidatus Ishikawaella 0 2 genus 1 409304 1 Candidatus Ishikawaella capsulata 1523 species 1 0 168169 1048757 63 genus 0 1 1048758 1 0 species 63 Candidatus Moranella endobia 0 18 no rank 9368 191675 clade 18 0 9368 84563 1906660 424 0 1 genus 0 1 species 424 Candidatus Mikella endobia 1778264 4068 clade 0 7 84564 Candidatus Blochmannia 4068 genus 7 0 21 203804 1 Candidatus Blochmannia vafer 865 species 1 0 251535 711328 1521 2 0 no rank 0 1 species 835 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 1505596 686 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 0 species 101534 602 Candidatus Blochmannia pennsylvanicus 0 1 species 251542 0 1 species 447 Candidatus Blochmannia chromaiodes 203907 1 0 species 612 Candidatus Blochmannia floridanus 353 1 0 clade 199891 1 0 species 353 secondary endosymbiont of Trabutina mannipara 1835721 1 1906659 1 108 Candidatus Hoaglandella 0 2 genus 1778263 1 0 species 107 Candidatus Hoaglandella endobia 1 1906657 3 287 Candidatus Doolittlea 0 2 genus 1778262 Candidatus Doolittlea endobia 284 species 0 1 146507 1711 clade 3 0 368 secondary endosymbiont of Ctenarytaina eucalypti 1 0 species 1199245 134287 secondary endosymbiont of Heteropsylla cubana 656 species 0 1 568987 687 1 0 genus 0 1 species 687 Candidatus Hamiltonella defensa 138072 1682492 genus 0 1 1656 1410383 Candidatus Tachikawaea gelatinosa 1656 species 0 1 761 genus 0 1 1906661 1070130 Candidatus Gullanella endobia 761 species 1 0 486 2 0 family 1903416 genus 2 0 Pragia 486 13 1 82984 82985 Pragia fontium 473 species 0 1 family 14 0 Hafniaceae 10851 72 1 1903412 1 82982 17 392 Obesumbacterium 2 0 genus 82983 species 1 0 Obesumbacterium proteus 375 genus 0 3 Hafnia 2082 52 1 568 Hafnia alvei 1551 species 0 1 569 479 no rank 1 0 2621980 1848580 479 Hafnia sp. CBA7124 1 0 species genus 0 8 Edwardsiella 8305 480 1 635 1882 no rank 2 0 2676541 species 1 0 Edwardsiella sp. EA181011 1007 1578828 1650654 Edwardsiella sp. LADL05-105 875 species 1 0 species 0 1 Edwardsiella hoshinae 690 93378 1 0 species 2411 Edwardsiella tarda 636 species 0 1 Edwardsiella anguillarum 888 1821960 1263550 1 0 species 1106 Edwardsiella piscicida 67780 1 0 species 848 Edwardsiella ictaluri 13 0 order 5647 Methylococcales 1 135618 54 54 1 403 family 12 0 Methylococcaceae 5593 genus 2 0 Methylococcus 905 23 1 413 414 Methylococcus capsulatus 882 species 0 1 genus 2 0 Methylovulum 611 7 1 762296 species 0 1 Methylovulum psychrotolerans 604 1704499 1 416 63 0 5 genus 2911 Methylomonas 2608980 no rank 1 0 874 1727196 species 0 1 Methylomonas sp. DH-1 874 1 0 species 554 Methylomonas denitrificans 1538553 702114 Methylomonas koyamae 777 species 0 1 species 1 0 Methylomonas methanica 643 421 3 1 39773 genus 0 2 Methylomicrobium 1112 271065 1109 Methylomicrobium alcaliphilum 0 1 species 42 1934945 1 Immundisolibacterales 1509 order 4 0 1 1934946 33 1467 Immundisolibacteraceae 0 3 family 1434 Immundisolibacter 0 2 genus 1 1934947 8 1 0 species 1426 Immundisolibacter cernigliae 1810504 118969 1 15 19681 Legionellales 19 0 order 1 444 14 0 14 family 17083 Legionellaceae 767 1 0 genus 465 451 Tatlockia micdadei 767 species 1 0 16302 Legionella 12 0 genus 1 445 35 Legionella waltersii 1246 species 0 1 66969 1867846 species 0 1 Legionella clemsonensis 439 2005262 species 0 1 Legionella endosymbiont of Polyplax serrata 864 Legionella oakridgensis 1163 species 1 0 29423 1 0 species 712 Legionella spiritensis 452 449 1622 Legionella hackeliae 1 0 species 28087 2478 Legionella sainthelensi 1 0 species 446 Legionella pneumophila 3937 species 1 0 species 1 0 Legionella fallonii 1181 96230 45067 species 0 1 Legionella lansingensis 674 450 Legionella longbeachae 1951 species 0 1 Coxiellaceae 2583 family 4 0 39 1 118968 776 genus 0 2 1968 945 Coxiella burnetii 0 1 species 777 1 0 no rank 1023 2676648 1023 Coxiella endosymbiont of Amblyomma americanum 1 0 species 325775 134284 no rank 0 1 576 1592897 0 1 species 576 Coxiella-like endosymbiont 1 135613 454 0 51 order 25186 Chromatiales family 0 18 Ectothiorhodospiraceae 9967 165 1 72276 23 1 133193 Alkalilimnicola 1091 genus 2 0 351052 1068 Alkalilimnicola ehrlichii 0 1 species 1 106633 96 6 0 genus 5309 Thioalkalivibrio 186931 species 1 0 Thioalkalivibrio nitratireducens 955 108010 817 Thioalkalivibrio paradoxus 1 0 species Thioalkalivibrio sulfidiphilus 1711 species 0 1 1033854 0 1 species 963 Thioalkalivibrio versutus 106634 767 no rank 1 0 2621013 767 Thioalkalivibrio sp. K90mix 1 0 species 396595 947 Spiribacter 3 0 genus 1 1335745 14 1335746 species 1 0 Spiribacter salinus 457 1335757 Spiribacter curvatus 476 species 1 0 895 Halorhodospira 2 0 genus 1 85108 4 1053 Halorhodospira halophila 891 species 1 0 561 Acidihalobacter 0 2 genus 1 1765964 48 0 1 species 513 Acidihalobacter prosperus 160660 1 1051 16 2 0 genus 999 Ectothiorhodospira 2684909 0 1 no rank 983 1442136 Ectothiorhodospira sp. BSL-9 983 species 1 0 1 449719 1 815 Granulosicoccaceae 3 0 family 2 437504 1 genus 2 0 Granulosicoccus 814 species 0 1 Granulosicoccus antarcticus 812 437505 1738654 1 1 3 0 family 532 Woeseiaceae 6 1 1738655 Woeseia 531 genus 0 2 1 0 species 525 Woeseia oceani 1548547 9818 Chromatiaceae 17 0 family 1 1046 109 genus 2 0 Thiodictyon 1920 14 1 53392 1 0 species 1906 Candidatus Thiodictyon syntrophicum 1166950 278 genus 0 1 1980513 Candidatus Nitrosoglobus terrae 278 species 0 1 1630141 Marichromatium 1397 genus 2 0 23 1 85076 0 1 species 1374 Marichromatium purpuratum 37487 82569 965 no rank 1 0 species 0 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 965 1978339 genus 0 4 Nitrosococcus 1526 24 1 1227 species 1 0 Nitrosococcus halophilus 279 133539 1229 1 0 species 424 Nitrosococcus oceani Nitrosococcus watsonii 799 species 1 0 473531 1003 Thioflavicoccus 2 0 genus 1 156885 29 80679 1 0 species 974 Thioflavicoccus mobilis 1 13724 34 0 2 genus 1257 Thiocystis Thiocystis violascens 1223 species 0 1 73141 0 2 genus 1363 Allochromatium 1 85072 8 species 1 0 Allochromatium vinosum 1355 1049 family 0 3 Wenzhouxiangellaceae 1104 33 1676141 1 0 2 genus 1071 Wenzhouxiangella 1 1676142 28 1579979 1043 Wenzhouxiangella marina 0 1 species 1 255526 5 0 4 family 1134 Halothiobacillaceae 1129 Halothiobacillus 3 0 genus 109262 1 6 927 Halothiobacillus neapolitanus 414 species 0 1 2636392 709 no rank 0 1 Halothiobacillus sp. LS2 709 species 0 1 1860122 1362 2 0 no rank 451214 Thiohalobacter 1362 genus 0 2 25 1 1273155 1 0 species 1337 Thiohalobacter thiocyanaticus 585455 74205 Alteromonadales 104 0 order 1 135622 185 267888 1 40 20931 Pseudoalteromonadaceae 25 0 family 345 1 53246 Pseudoalteromonas 20891 genus 0 24 548 Pseudoalteromonas phenolica 1 0 species 161398 43658 Pseudoalteromonas rubra 476 species 1 0 species 1 0 Pseudoalteromonas agarivorans 683 176102 1204 Pseudoalteromonas atlantica 0 1 species 288 314281 1 0 species 1243 Pseudoalteromonas tunicata Pseudoalteromonas marina 683 species 1 0 267375 28109 species 1 0 Pseudoalteromonas nigrifaciens 1490 1259 Pseudoalteromonas piratica 0 1 species 1348114 Pseudoalteromonas tetraodonis 484 species 1 0 43659 species 0 1 Pseudoalteromonas piscicida 973 43662 228 1302 Pseudoalteromonas haloplanktis 0 1 species 43657 1502 Pseudoalteromonas luteoviolacea 0 1 species species 1 0 Pseudoalteromonas aliena 684 247523 1 0 species 854 Pseudoalteromonas arctica 394751 166935 1358 Pseudoalteromonas translucida 0 1 species Pseudoalteromonas issachenkonii 465 species 1 0 152297 194690 0 5 no rank 3327 1761891 species 1 0 Pseudoalteromonas sp. 13-15 592 species 0 1 Pseudoalteromonas sp. Bsw20308 1023 283699 Pseudoalteromonas sp. SM9913 489 species 1 0 234831 1720343 0 1 species 536 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1514074 687 Pseudoalteromonas sp. NC201 0 1 species 1 0 species 1298 Pseudoalteromonas spongiae 298657 28107 0 1 species 713 Pseudoalteromonas espejiana 1 267891 1 992 Moritellaceae 0 3 family 3 1 58050 Moritella 991 genus 0 2 988 Moritella viscosa 1 0 species 80854 34 1 267890 family 25 0 Shewanellaceae 16222 22 1 244 16188 Shewanella 24 0 genus 359303 539 Shewanella loihica 0 1 species 225848 species 0 1 Shewanella psychrophila 640 species 1 0 Shewanella pealeana 704 70864 60961 Shewanella woodyi 745 species 1 0 0 1 species 615 Shewanella japonica 93973 1 0 species 560 Shewanella denitrificans 192073 404011 Shewanella piezotolerans 1753 species 1 0 70863 538 Shewanella oneidensis 0 1 species 417 Shewanella bicestrii 1 0 species 2018305 60217 581 Shewanella violacea 1 0 species 871 Shewanella amazonensis 1 0 species 60478 196818 no rank 0 6 2997 2029986 species 0 1 Shewanella sp. WE21 504 351745 Shewanella sp. W3-18-1 552 species 1 0 548 Shewanella sp. Pdp11 0 1 species 2059264 94122 species 1 0 Shewanella sp. ANA-3 695 329 Shewanella sp. MR-7 0 1 species 60481 60480 1 0 species 369 Shewanella sp. MR-4 260364 1 0 species 475 Shewanella marisflavi 56812 Shewanella frigidimarina 729 species 0 1 271098 1 0 species 839 Shewanella halifaxensis 24 Shewanella putrefaciens 525 species 1 0 271097 0 1 species 538 Shewanella sediminis 62322 species 1 0 Shewanella baltica 1878 126 1 267889 family 9 0 Colwelliaceae 8911 0 6 genus 6697 Colwellia 1 28228 96 196834 0 3 no rank 3445 species 1 0 Colwellia sp. MT41 1432 58049 Colwellia sp. PAMC 21821 902 species 1 0 1816219 1 0 species 1111 Colwellia sp. PAMC 20917 1816218 1 0 species 2328 Colwellia psychrerythraea 28229 species 0 1 Colwellia beringensis 828 1967665 2088 Thalassotalea 0 2 genus 1 1518149 9 species 1 0 Thalassotalea crassostreae 2079 1763536 267892 1129 family 2 0 Ferrimonas 1129 genus 2 0 16 1 44011 44012 1 0 species 1113 Ferrimonas balearica family 0 6 Idiomarinaceae 1735 6 1 267893 Idiomarina 1729 genus 0 5 10 135575 1 Idiomarina piscisalsi 261 species 1 0 1096243 916 Idiomarina loihiensis 1 0 species 135577 2614829 no rank 0 2 542 275 Idiomarina sp. OT37-5b 0 1 species 2100422 Idiomarina sp. X4 267 species 0 1 2055892 1 72275 61 0 29 family 21896 Alteromonadaceae 226 1 63 10 0 genus 9005 Alteromonas 1742 Alteromonas mediterranea 0 1 species 314275 species 1 0 Alteromonas stellipolaris 872 233316 0 3 no rank 2357 2614992 1777491 1 0 species 458 Alteromonas sp. Mac1 1917158 954 Alteromonas sp. RW2A1 1 0 species 2058133 Alteromonas sp. MB-3u-76 945 species 0 1 28108 0 1 species 2031 Alteromonas macleodii 287094 Alteromonas addita 475 species 0 1 0 1 species 658 Alteromonas naphthalenivorans 715451 807 Alteromonas australica 1 0 species 589873 781 Lacimicrobium 2 0 genus 1 1751872 16 1526571 765 Lacimicrobium alkaliphilum 1 0 species 3 1 1621534 Paraglaciecola 1389 genus 2 0 species 1 0 Paraglaciecola psychrophila 1386 326544 genus 0 3 Glaciecola 2304 1 1 89404 species 0 1 Glaciecola nitratireducens 1494 300231 0 1 no rank 809 2618684 983545 Glaciecola sp. 4H-3-7+YE-5 809 species 0 1 261825 682 genus 0 1 680279 species 1 0 Agarivorans gilvus 682 1 2742 125 10 0 genus 7674 Marinobacter 1420916 740 Marinobacter similis 0 1 species 1033846 914 Marinobacter adhaerens 0 1 species Marinobacter salinus 701 species 0 1 1874317 2743 0 1 species 1036 Marinobacter hydrocarbonoclasticus species 0 1 Marinobacter salarius 1306 1420917 2405 3 0 no rank 83889 1 0 species 1017 Marinobacter sp. LQ44 1749259 490759 species 1 0 Marinobacter sp. BSs20148 571 1671721 Marinobacter sp. CP1 817 species 0 1 447 Marinobacter psychrophilus 1 0 species 330734 80 1 267894 family 4 0 Psychromonadaceae 2204 8 1 67572 genus 3 0 Psychromonas 2124 2614957 1172 1 0 no rank 314282 1 0 species 1172 Psychromonas sp. CNPT3 944 Psychromonas ingrahamii 1 0 species 357794 order 35 0 Thiotrichales 42474 39 72273 1 family 0 15 Piscirickettsiaceae 7649 117 1 135616 1 34067 16 0 4 genus 2844 Cycloclasticus species 0 1 Cycloclasticus zancles 955 1329899 2621467 1873 no rank 2 0 925 Cycloclasticus sp. P1 1 0 species 385025 728003 0 1 species 948 Cycloclasticus sp. PY97N genus 3 0 Methylophaga 1533 20 1 40222 754476 species 0 1 Methylophaga nitratireducenticrescens 919 754477 0 1 species 594 Methylophaga frappieri genus 0 2 Piscirickettsia 1730 2 1237 1 1238 1728 Piscirickettsia salmonis 0 1 species 2 0 genus 593 Hydrogenovibrio 1 28884 48 39765 species 0 1 Hydrogenovibrio crunogenus 545 933 1 6 832 Thiomicrospira 0 3 genus 471 Thiomicrospira aerophila 0 1 species 92245 147268 355 Thiomicrospira cyclica 0 1 species 26 1 34064 Francisellaceae 32917 family 0 14 118 262 1 genus 0 12 Francisella 29952 573569 Francisella sp. TX077308 1474 species 0 1 species 1 0 Francisella persica 1106 954 no rank 2 0 5026 2610885 Francisella sp. MA067296 1608 species 0 1 475375 3418 Francisella sp. FSC1006 1 0 species 1547445 Francisella philomiragia 4857 species 0 1 28110 657445 2723 Francisella noatunensis 0 1 species 1828 Francisella halioticida 1 0 species 549298 263 species 0 1 Francisella tularensis 5243 1542390 species 0 1 Francisella sp. CA97-1460 3418 622488 Francisella hispaniensis 2211 species 1 0 573570 species 1 0 Francisella sp. TX077310 1948 1869285 0 1 genus 2939 species 1 0 Allofrancisella guangzhouensis 2939 594679 1 135617 4 5 0 family 1869 Thiotrichaceae 1374 Beggiatoa 0 2 genus 1 1021 6 288004 Beggiatoa leptomitoformis 1368 species 0 1 40751 1 4 0 2 genus 491 Thioploca Thioploca ingrica 487 species 0 1 40754 2385 Acidiferrobacterales 0 6 order 1 1692040 32 0 5 family 2353 Acidiferrobacteraceae 1 1692041 48 1 1692042 16 2 0 genus 1320 Sulfurifustis 0 1 species 1304 Sulfurifustis variabilis 1675686 0 2 genus 985 Sulfuricaulis 1 1744881 20 Sulfuricaulis limicola 965 species 1 0 1620215 Vibrionales 39312 order 43 0 23 1 135623 Vibrionaceae 39289 family 0 42 128 1 641 17 511678 1 Aliivibrio 3357 genus 4 0 80852 884 Aliivibrio wodanis 0 1 species 40269 Aliivibrio salmonicida 1154 species 0 1 668 Aliivibrio fischeri 1302 species 0 1 2042066 genus 0 1 3379 1755811 species 1 0 Paraphotobacterium marinum 3379 1 662 359 0 30 genus 28956 Vibrio 687 664 Vibrio gazogenes 1 0 species Vibrio nigripulchritudo 740 species 1 0 28173 824 Vibrio anguillarum 1 0 species 55601 2025808 388 Vibrio qinghaiensis 1 0 species 1435069 892 Vibrio tritonius 1 0 species 2507 Vibrio vulnificus 1 0 species 672 52443 0 1 species 482 Vibrio tapetis 553239 1 0 species 486 Vibrio breoganii 676 1020 Vibrio fluvialis 0 1 species 29494 1 0 species 752 Vibrio furnissii 1534743 1 0 species 260 Vibrio hyugaensis Vibrio mimicus 1031 species 0 1 674 45658 species 0 1 Vibrio scophthalmi 679 11010 species group 0 10 717610 0 1 species 1390 Vibrio natriegens 691 0 1 species 362 Vibrio jasicida 766224 2217 Vibrio parahaemolyticus 0 1 species 670 0 1 species 1466 Vibrio campbellii 680 species 0 1 Vibrio harveyi 695 669 2315253 1368 species subgroup 2 0 50719 872 Vibrio diabolicus 0 1 species 150340 496 Vibrio antiquarius 1 0 species 190895 0 1 species 425 Vibrio rotiferianus 696485 1 0 species 678 Vibrio owensii 663 0 1 species 2409 Vibrio alginolyticus 0 1 species group 503 1891919 Vibrio tubiashii 503 species 0 1 29498 2614977 2164 no rank 2 0 species 0 1 Vibrio sp. 2521-89 970 2014742 1116375 Vibrio sp. EJY3 1194 species 0 1 212663 species 0 1 Vibrio tasmaniensis 764 190893 1752 Vibrio coralliilyticus 1 0 species 666 Vibrio cholerae 1679 species 0 1 1 246861 3 0 2 genus 764 Grimontia species 1 0 Grimontia hollisae 761 673 Photobacterium 2705 genus 0 4 5 1 657 1 0 species 857 Photobacterium profundum 74109 1295392 1 0 species 850 Photobacterium gaetbulicola 38293 Photobacterium damselae 993 species 0 1 1240482 1 26 5 0 order 4111 Orbales 0 4 family 4085 Orbaceae 1 1240483 12 0 2 genus 2930 Gilliamella 1 1193503 10 1196095 species 1 0 Gilliamella apicola 2920 1143 0 1 genus 1335631 species 0 1 Frischella perrara 1143 1267021 33811 Aeromonadales 0 29 order 1 135624 168 28 0 family 33643 Aeromonadaceae 1 84642 289 genus 0 3 Oceanisphaera 799 7 1 225143 1903694 Oceanisphaera sp. AMac2203 432 species 1 0 1 0 species 360 Oceanisphaera profunda 1416627 11 1 43947 genus 0 2 Tolumonas 648 Tolumonas auensis 637 species 0 1 43948 1923 Zobellella 0 2 genus 1 347533 22 1901 Zobellella denitrificans 0 1 species 347534 1871 1 642 Aeromonas 28169 genus 0 18 652 1150 Aeromonas schubertii 0 1 species 654 2584 Aeromonas veronii 0 1 species 0 1 species 2259 Aeromonas salmonicida 645 644 Aeromonas hydrophila 6607 species 0 1 651 Aeromonas media 1054 species 0 1 8 0 no rank 7772 257493 1758179 0 1 species 1105 Aeromonas sp. ASNIH5 1636607 893 Aeromonas sp. ASNIH2 0 1 species 2033032 species 1 0 Aeromonas sp. CA23 1195 1018 Aeromonas sp. CU5 1 0 species 2033033 1636609 Aeromonas sp. ASNIH4 1192 species 0 1 1636608 802 Aeromonas sp. ASNIH3 0 1 species 0 1 species 720 Aeromonas sp. ASNIH7 1920107 1636606 847 Aeromonas sp. ASNIH1 1 0 species 815 Aeromonas caviae 1 0 species 648 948519 species 1 0 Aeromonas rivipollensis 1211 species 1 0 Aeromonas aquatica 1155 558964 1691 Aeromonas dhakensis 0 1 species 196024 1 129577 7 1815 Oceanimonas 2 0 genus 2636315 no rank 1 0 1808 511062 0 1 species 1808 Oceanimonas sp. GK1 1 135625 23 0 33 order 28826 Pasteurellales family 32 0 Pasteurellaceae 28803 388 712 1 1 476528 3 2 0 genus 1162 Bibersteinia 47735 Bibersteinia trehalosi 1159 species 0 1 1 1 155493 Gallibacterium 1951 genus 0 2 0 1 species 1950 Gallibacterium anatis 750 1 75984 15 2997 Mannheimia 4 0 genus 75985 species 1 0 Mannheimia haemolytica 1100 2645054 1 0 no rank 599 Mannheimia sp. USDA-ARS-USMARC-1261 599 species 1 0 1432056 85404 1 0 species 1283 Mannheimia varigena 14 1 416916 genus 0 3 Aggregatibacter 2178 Aggregatibacter actinomycetemcomitans 1296 species 0 1 714 species 1 0 Aggregatibacter aphrophilus 868 732 724 1 124 8414 Haemophilus 6 0 genus 932 0 1 no rank 2609962 712310 species 1 0 Haemophilus sp. oral taxon 036 932 249188 Haemophilus pittmaniae 1039 species 1 0 species 0 1 [Haemophilus] ducreyi 1316 730 729 0 1 species 926 Haemophilus parainfluenzae Haemophilus influenzae 4077 species 0 1 727 1 697331 1 0 2 genus 751 Basfia 157673 species 1 0 [Mannheimia] succiniciproducens 750 2 0 genus 1772 Glaesserella 1 2094023 11 Glaesserella parasuis 1761 species 1 0 738 7 1 745 genus 3 0 Pasteurella 3443 747 Pasteurella multocida 2227 species 1 0 species 0 1 Pasteurella dagmatis 1209 754 5 1 214906 genus 2 0 Histophilus 2366 731 0 1 species 2361 Histophilus somni Actinobacillus 3381 genus 5 0 25 1 713 716 species 0 1 Actinobacillus suis 631 species 1 0 Actinobacillus pleuropneumoniae 933 715 Actinobacillus succinogenes 693 species 1 0 67854 Actinobacillus equuli 1099 species 0 1 718 118884 no rank 14 0 8848 32036 2878 clade 0 4 Bathymodiolus septemdierum thioautotrophic gill symbiont 533 species 0 1 113267 1 1541743 3 2 0 genus 409 Candidatus Ruthia species 0 1 Candidatus Ruthia magnifica 406 386487 410330 1936 Calyptogena okutanii thioautotrophic gill symbiont 0 1 species 3 0 genus 1516 Candidatus Thioglobus 1 655184 10 Candidatus Thioglobus autotrophicus 468 species 0 1 1705394 1427364 Candidatus Thioglobus singularis 1038 species 1 0 198346 1 0 clade 2167 1 0 species 2167 Candidatus Baumannia cicadellinicola 186490 5 1 349742 Sedimenticola 802 genus 0 2 1543721 1 0 species 797 Sedimenticola thiotaurini 1 1524249 1 618 Pseudohongiella 2 0 genus 1249552 1 0 species 617 Pseudohongiella spirulinae 3 1 1608298 genus 0 2 Thiolapillus 867 1076588 1 0 species 864 Thiolapillus brandeum 458 1 135614 order 0 53 Xanthomonadales 58033 592 1 32033 family 0 38 Xanthomonadaceae 47222 36 1 83618 Pseudoxanthomonas 3498 genus 0 3 415229 Pseudoxanthomonas spadix 1032 species 1 0 2430 Pseudoxanthomonas suwonensis 0 1 species 314722 1 338 895 18272 Xanthomonas 17 0 genus 1539 Xanthomonas oryzae 0 1 species 347 species 1 0 Xanthomonas vesicatoria 868 56460 366650 552 Xanthomonas alfalfae 1 0 species 0 1 species 677 Xanthomonas phaseoli 1985254 3245 2 0 species group 643453 346 Xanthomonas citri 2332 species 0 1 366648 species 1 0 Xanthomonas fuscans 913 Xanthomonas fragariae 519 species 1 0 48664 56458 0 1 species 1431 Xanthomonas sacchari Xanthomonas albilineans 640 species 0 1 29447 53413 638 Xanthomonas axonopodis 1 0 species Xanthomonas hortorum 783 species 1 0 56454 species 1 0 Xanthomonas campestris 2650 339 species 1 0 Xanthomonas translucens 1750 343 1 0 species 645 Xanthomonas euvesicatoria 456327 1 0 species 781 Xanthomonas perforans 442694 56459 species 0 1 Xanthomonas vasicola 659 1 0 genus 901 2370 species 1 0 Xylella fastidiosa 901 2371 0 9 genus 16791 Stenotrophomonas 40323 1 407 species group 1 0 7643 995085 0 1 species 7643 Stenotrophomonas maltophilia 40324 Stenotrophomonas acidaminiphila 2141 species 1 0 128780 83617 species 1 0 Stenotrophomonas nitritireducens 1011 216778 1193 Stenotrophomonas rhizophila 0 1 species no rank 0 4 4396 196198 2005046 Stenotrophomonas sp. WZN-1 1083 species 1 0 0 1 species 1004 Stenotrophomonas sp. KCTC 12332 1793721 1904944 1162 Stenotrophomonas sp. LM091 1 0 species 1827305 species 0 1 Stenotrophomonas sp. MYb57 1147 5 0 genus 6341 Lysobacter 1 68 119 species 1 0 Lysobacter enzymogenes 1549 69 Lysobacter gummosus 1409 species 0 1 262324 435897 1873 Lysobacter capsici 1 0 species 84531 species 1 0 Lysobacter antibioticus 1391 1 83614 11 0 2 genus 827 Luteimonas 1 0 species 816 Luteimonas sp. 100111 2006110 14 0 family 10353 Rhodanobacteraceae 1 1775411 117 1580 Rhodanobacter 2 0 genus 1 75309 23 Rhodanobacter denitrificans 1557 species 1 0 666685 Frateuria 949 genus 2 0 8 1 70411 81475 1 0 species 941 Frateuria aurantia 1 323413 24 1486 Dokdonella 0 2 genus 1462 Dokdonella koreensis 0 1 species 323415 242605 1 11 0 2 genus 971 Luteibacter 242606 species 1 0 Luteibacter rhizovicinus 960 81 1 231454 genus 0 4 Dyella 4605 231455 1 0 species 1547 Dyella japonica Dyella jiangningensis 1528 species 1 0 1379159 445710 Dyella thiooxydans 1449 species 1 0 0 1 genus 645 2233801 645 Xanthomonadales bacterium D13 1 0 species 2021234 Cellvibrionales 11733 order 28 0 46 1706369 1 14 1 1706375 Spongiibacteraceae 1447 family 0 7 23 1 1084558 Oceanicoccus 570 genus 2 0 547 Oceanicoccus sagamiensis 1 0 species 716816 21 1434050 1 Zhongshania 533 genus 0 2 1470434 512 Zhongshania aliphaticivorans 1 0 species genus 0 2 Spongiibacter 330 20 1 630749 310 1 0 no rank 2631504 1620392 species 0 1 Spongiibacter sp. IMCC21906 310 4 0 family 1001 Halieaceae 1706372 1 16 1217416 1 46 0 3 genus 985 Halioglobus 930806 0 1 species 443 Halioglobus pacificus Halioglobus japonicus 496 species 0 1 930805 6271 Cellvibrionaceae 0 11 family 1 1706371 64 316625 1126 genus 1 0 species 1 0 Saccharophagus degradans 1126 86304 Cellvibrio 2592 genus 4 0 11 10 1 2624793 1977 0 2 no rank 1945512 species 1 0 Cellvibrio sp. PSBB023 889 1088 Cellvibrio sp. PSBB006 1 0 species 1987723 155077 species 0 1 Cellvibrio japonicus 604 1 2425 4 558 Teredinibacter 2 0 genus Teredinibacter turnerae 554 species 0 1 2426 447467 933 genus 1 0 Simiduia agarivorans 933 species 0 1 447471 Agarilytica 998 genus 2 0 2 1 2036021 Agarilytica rhodophyticola 996 species 0 1 1737490 18 1706373 1 Microbulbiferaceae 2968 family 5 0 18 1 48073 Microbulbifer 2950 genus 0 4 species 0 1 Microbulbifer agarilyticus 1327 260552 Microbulbifer aggregans 796 species 0 1 1769779 252514 809 Microbulbifer thermotolerans 0 1 species order 0 4 Nevskiales 869 11 1 1775403 family 0 2 844 2689614 genus 0 2 Steroidobacter 844 53 1 469322 465721 species 1 0 Steroidobacter denitrificans 791 568386 14 Sinobacteraceae 1 0 family 1 135619 357 39417 Oceanospirillales 0 68 order family 2 0 1285 191033 49 1 141450 genus 0 2 Oleiphilus 1285 141451 species 0 1 Oleiphilus messinensis 1236 family 5 0 Saccharospirillaceae 1849 22 1 255527 genus 2 0 Reinekea 783 7 1 230494 1336806 0 1 species 776 Reinekea forsetii 1445504 1 5 1044 Gynuella 0 2 genus Gynuella sunshinyii 1039 species 1 0 1445505 6 0 family 2115 Kangiellaceae 1 1920240 23 Kangiella 2092 genus 5 0 85 1 261963 Kangiella profundi 745 species 1 0 1561924 1 0 species 304 Kangiella koreensis 261964 1144748 0 1 species 683 Kangiella sediminilitoris 914150 Kangiella geojedonensis 275 species 0 1 0 11 family 5178 Oceanospirillaceae 1 135620 76 770 Bacterioplanes 2 0 genus 1537406 1 13 757 Bacterioplanes sanyensis 0 1 species 1249553 370 0 1 genus 187492 187493 Thalassolituus oleivorans 370 species 1 0 23 48075 1 genus 0 2 Marinobacterium 1321 Marinobacterium aestuarii 1298 species 1 0 1821621 878 genus 1 0 188907 0 1 species 878 Oleispira antarctica 188908 1 28253 21 4 0 genus 1763 Marinomonas 196814 0 1 no rank 818 Marinomonas sp. MWYL1 818 species 1 0 400668 496 Marinomonas mediterranea 1 0 species 119864 936476 428 Marinomonas posidonica 1 0 species 31 0 family 21614 Halomonadaceae 1 28256 336 genus 0 15 Halomonas 12068 201 1 2745 6094 8 0 no rank 2609666 Halomonas sp. 'Soap Lake #6' 601 species 1 0 1949203 1971364 Halomonas sp. GT 507 species 0 1 1883416 1323 Halomonas sp. 1513 0 1 species 1118153 0 1 species 316 Halomonas sp. GFAJ-1 Halomonas sp. R57-5 1004 species 1 0 1610576 species 1 0 Halomonas sp. 'Soap Lake #7' 601 1962264 species 1 0 Halomonas sp. SF2003 1041 2136172 1504981 Halomonas sp. KO116 701 species 1 0 609 Halomonas huangheensis 0 1 species 1178482 115561 Halomonas hydrothermalis 1193 species 0 1 213554 1 0 species 466 Halomonas campaniensis species 0 1 Halomonas aestuarii 1212 1897729 Halomonas beimenensis 1311 species 1 0 475662 507626 0 1 species 982 Halomonas chromatireducens 8 1 504090 Kushneria 1884 genus 0 3 1 0 species 917 Kushneria marisflavi 157779 1 0 species 959 Kushneria konosiri 698828 114403 no rank 4 0 2742 1 235572 3 657 Candidatus Portiera 0 2 genus Candidatus Portiera aleyrodidarum 654 species 0 1 91844 1495768 1 0 genus 1981 species 0 1 Candidatus Evansia muelleri 1981 1495769 104 1 0 genus 114185 104 Candidatus Carsonella ruddii 0 1 species 114186 genus 2 0 Chromohalobacter 944 30 1 42054 158080 species 1 0 Chromohalobacter salexigens 914 2 0 genus 1206 Salinicola 1 404432 23 Salinicola tamaricis 1183 species 1 0 1771309 14 376488 1 genus 0 2 Halotalea 887 0 1 species 873 Halotalea alkalilenta 376489 genus 2 0 Cobetia 1547 14 1 204286 1533 Cobetia marina 0 1 species 28258 1 224379 5 0 3 family 902 Hahellaceae 897 Hahella 0 2 genus 1 158481 6 891 Hahella chejuensis 0 1 species 158327 1 224372 32 9 0 family 6117 Alcanivoracaceae 0 2 genus 1277 Ketobacter 1 2025617 52 1917421 1225 Ketobacter alkanivorans 0 1 species 0 6 genus 4808 Alcanivorax 1 59753 118 1094342 1143 Alcanivorax xenomutans 1 0 species 59754 0 1 species 362 Alcanivorax borkumensis species 1 0 Alcanivorax dieselolei 1251 285091 2638842 385 no rank 1 0 1113728 0 1 species 385 Alcanivorax sp. NBRC 101098 1549 Alcanivorax pacificus 0 1 species 1306787 1 72274 756 177898 Pseudomonadales 0 129 order 825 1 135621 Pseudomonadaceae 132394 family 0 86 genus 80 0 Pseudomonas 127375 4680 1 286 Pseudomonas cremoricolorata 1048 species 1 0 157783 312306 1 0 species 795 Pseudomonas entomophila 12055 8 0 species group 136849 species 0 1 Pseudomonas avellanae 862 46257 1 0 species 1610 Pseudomonas syringae group genomosp. 3 251701 251695 0 1 species subgroup 5217 1 0 species 5217 Pseudomonas syringae 317 251698 2321 species subgroup 0 2 1157 Pseudomonas amygdali 1 0 species 47877 1164 Pseudomonas savastanoi 0 1 species 29438 species 1 0 Pseudomonas cichorii 607 36746 33069 species 0 1 Pseudomonas viridiflava 830 2775504 608 no rank 0 1 1206777 608 Pseudomonas sp. Lz4W 0 1 species 237610 1248 Pseudomonas psychrotolerans 0 1 species Pseudomonas frederiksbergensis 2442 species 0 1 104087 219572 1 0 species 662 Pseudomonas antarctica 101564 1 0 species 1199 Pseudomonas alcaliphila 237609 0 1 species 793 Pseudomonas alkylphenolica 583 Pseudomonas lurida 1 0 species 244566 19092 0 6 species group 136845 47885 1087 Pseudomonas oryzihabitans 0 1 species 78327 species 0 1 Pseudomonas mosselii 2446 303 species 0 1 Pseudomonas putida 10683 1661 Pseudomonas fulva 0 1 species 47880 species 1 0 Pseudomonas plecoglossicida 851 70775 76759 2364 Pseudomonas monteilii 0 1 species 17670 9 0 species group 136843 754 Pseudomonas poae 0 1 species 200451 1 0 species 1344 Pseudomonas protegens 380021 species 1 0 Pseudomonas veronii 847 76761 294 Pseudomonas fluorescens 9929 species 0 1 75612 779 Pseudomonas mandelii 1 0 species 47878 Pseudomonas azotoformans 1388 species 0 1 744 Pseudomonas corrugata 0 1 species 47879 Pseudomonas orientalis 914 species 1 0 76758 200450 Pseudomonas trivialis 971 species 0 1 216142 species 1 0 Pseudomonas rhizosphaerae 1000 species group 6 0 16054 136841 4031 Pseudomonas mendocina 0 1 species 300 1101 Pseudomonas resinovorans 0 1 species 53412 1232139 1386 1 0 species subgroup 0 1 species 1386 Pseudomonas furukawaii 1149133 287 Pseudomonas aeruginosa 5304 species 0 1 53408 species 0 1 Pseudomonas citronellolis 2954 1278 Pseudomonas alcaligenes 1 0 species 43263 0 2 species group 8008 136846 species 1 0 Pseudomonas balearica 995 74829 578833 7013 species subgroup 1 0 316 Pseudomonas stutzeri 7013 species 1 0 species group 2 0 5803 136842 0 1 species 1311 Pseudomonas fragi 296 587753 4492 Pseudomonas chlororaphis 1 0 species 198620 0 1 species 1316 Pseudomonas koreensis 1583341 828 Pseudomonas cerasi 1 0 species species 1 0 Pseudomonas silesiensis 568 1853130 Pseudomonas knackmussii 1249 species 1 0 65741 564 Pseudomonas versuta 0 1 species 1788301 species 1 0 Pseudomonas brassicacearum 1648 930166 no rank 30 0 26468 196821 Pseudomonas sp. LH1G9 897 species 1 0 2083055 Pseudomonas sp. MRSN12121 1131 species 1 0 1611770 1827300 Pseudomonas sp. MYb193 674 species 0 1 Pseudomonas sp. Os17 1060 species 0 1 1500686 1659194 602 Pseudomonas sp. GR 6-02 1 0 species Pseudomonas sp. PONIH3 1173 species 1 0 1636610 Pseudomonas sp. SWI36 786 species 1 0 2083052 species 0 1 Pseudomonas sp. TKP 661 1415630 1294143 1360 Pseudomonas sp. ATCC 13867 1 0 species Pseudomonas sp. VLB120 688 species 1 0 69328 1534110 1 0 species 753 Pseudomonas sp. DR 5-09 Pseudomonas sp. LPH1 995 species 1 0 1898684 2069256 Pseudomonas sp. XWY-1 708 species 1 0 1259844 0 1 species 839 Pseudomonas sp. FGI182 1856685 Pseudomonas sp. TCU-HL1 1264 species 1 0 2083051 Pseudomonas sp. SWI6 715 species 0 1 1649877 978 Pseudomonas sp. CCOS 191 1 0 species 1 0 species 1038 Pseudomonas sp. URMO17WK12:I11 1283291 1981174 species 1 0 Pseudomonas sp. M30-35 448 657 Pseudomonas sp. SWI44 1 0 species 2083053 2067572 0 1 species 791 Pseudomonas sp. NC02 1207075 739 Pseudomonas sp. UW4 1 0 species 1930532 1 0 species 1163 Pseudomonas sp. CC6-YY-74 species 1 0 Pseudomonas sp. JY-Q 849 1338689 1028989 1150 Pseudomonas sp. StFLB209 1 0 species 1931241 1 0 species 958 Pseudomonas sp. S-6-2 2049589 1 0 species 605 Pseudomonas sp. HLS-6 1172 Pseudomonas sp. St29 0 1 species 1500687 2018067 species 0 1 Pseudomonas sp. FDAARGOS_380 781 species 1 0 Pseudomonas sp. LG1D9 833 2083054 157782 Pseudomonas parafulva 1602 species 0 1 3655 subfamily 0 3 351 1 352 23 3655 Azotobacter 0 3 genus 353 species 1 0 Azotobacter chroococcum 2170 species 1 0 Azotobacter vinelandii 1462 354 2 0 genus 539 Oblitimonas 1849530 1 1 Oblitimonas alkaliphila 538 species 1 0 1697053 1 468 146 0 42 family 44748 Moraxellaceae 5233 Psychrobacter 0 11 genus 1 497 65 Psychrobacter urativorans 811 species 0 1 45610 species 1 0 Psychrobacter alimentarius 362 261164 196806 3293 6 0 no rank Psychrobacter sp. P11G5 370 species 1 0 1699624 547 Psychrobacter sp. AntiMn-1 0 1 species 1720344 Psychrobacter sp. P2G3 585 species 1 0 1699622 1 0 species 610 Psychrobacter sp. PRwf-1 349106 1028416 804 Psychrobacter sp. DAB_AL43B 1 0 species 571800 1 0 species 377 Psychrobacter sp. G 330922 325 Psychrobacter cryohalolentis 1 0 species Psychrobacter arcticus 377 species 0 1 334543 Moraxella 3895 genus 5 0 12 475 1 Moraxella bovoculi 1178 species 1 0 386891 34062 species 0 1 Moraxella osloensis 1563 29433 0 1 species 639 Moraxella ovis 480 503 Moraxella catarrhalis 0 1 species 1 469 257 35474 Acinetobacter 0 25 genus species 0 1 Acinetobacter johnsonii 700 40214 Acinetobacter equi 2457 species 1 0 1324350 1 0 species 919 Acinetobacter larvae 1789224 Acinetobacter radioresistens 725 species 1 0 40216 1452 Acinetobacter junii 1 0 species 40215 29430 species 0 1 Acinetobacter haemolyticus 1508 756892 species 0 1 Acinetobacter indicus 412 202950 1476 0 1 species Acinetobacter sp. ADP1 1476 strain 0 1 62977 species 0 1 Acinetobacter soli 342 487316 875 Acinetobacter schindleri 1 0 species 108981 106648 0 1 species 902 Acinetobacter bereziniae 1799 Acinetobacter oleivorans 0 1 species 1148157 5 0 species group 16464 909768 2243 Acinetobacter calcoaceticus 0 1 species 471 106654 0 1 species 2518 Acinetobacter nosocomialis 1184 Acinetobacter lactucae 1 0 species 1785128 48296 4284 Acinetobacter pittii 1 0 species 470 species 0 1 Acinetobacter baumannii 6235 196816 5186 no rank 0 7 1219 Acinetobacter sp. LoGeW2-3 0 1 species 1808001 Acinetobacter sp. TGL-Y2 581 species 0 1 1407071 1 0 species 669 Acinetobacter sp. ACNIH2 1758189 1608473 Acinetobacter sp. NCu2D-2 970 species 1 0 1 0 species 829 Acinetobacter sp. TTH0-4 1646498 1636603 species 1 0 Acinetobacter sp. ACNIH1 590 2079596 species 0 1 Acinetobacter sp. SWBY1 328 4 1 1553900 Oligoflexia 7255 class 13 0 4177 Bacteriovoracales 0 7 order 1 2024979 92 3 0 family 2366 Halobacteriovoraceae 1 1652132 44 genus 0 2 Halobacteriovorax 2322 2 1 1652133 97084 Halobacteriovorax marinus 2320 species 1 0 0 3 family 1719 Bacteriovoracaceae 1 263369 3 genus 2 0 Bacteriovorax 1716 14 1 146784 Bacteriovorax stolpii 1702 species 0 1 960 Bdellovibrionales 3074 order 5 0 25 213481 1 0 4 family 3049 Bdellovibrionaceae 1 213483 24 genus 0 3 Bdellovibrio 3025 29 958 1 0 1 species 537 Bdellovibrio exovorus 453816 1 0 species 2459 Bdellovibrio bacteriovorus 959 6 0 class 3034 1807140 6 0 order 3034 Acidithiobacillales 1 225057 44 2990 Acidithiobacillaceae 0 5 family 1 225058 22 Acidithiobacillus 2968 genus 0 4 26 1 119977 1084 Acidithiobacillus ferrivorans 0 1 species 160808 949 Acidithiobacillus caldus 0 1 species 33059 920 909 Acidithiobacillus ferrooxidans 0 1 species 1 28216 909 348 0 class 364119 Betaproteobacteria 1 80840 3039 286992 Burkholderiales 0 234 order 0 43 family 53716 Alcaligenaceae 1 506 540 25 1 359336 Castellaniella 1599 genus 2 0 Castellaniella defragrans 1574 species 1 0 75697 1298 Advenella 3 0 genus 1 290425 40 302406 1 0 species 581 Advenella mimigardefordensis Advenella kashmirensis 677 species 0 1 310575 genus 2 0 Basilea 576 9 1 1472344 Basilea psittacipulmonis 567 species 0 1 1472345 24150 Bordetella 0 17 genus 517 1 752 463014 1420 Bordetella flabilis 1 0 species species 1 0 Bordetella pertussis 1261 520 1 0 species 1471 Bordetella parapertussis 519 1521 Bordetella genomosp. 6 1 0 species 463024 1717 Bordetella bronchialis 0 1 species 463025 35814 716 Bordetella holmesii 0 1 species Bordetella avium 927 species 0 1 521 1 0 species 1529 Bordetella genomosp. 8 1416806 0 1 species 1330 Bordetella petrii 94624 463040 0 1 species 1611 Bordetella genomosp. 13 species 1 0 Bordetella genomosp. 9 1291 1416803 1354 0 1 no rank 2630031 1697043 Bordetella sp. H567 1354 species 0 1 103855 0 1 species 1603 Bordetella hinzii 0 1 species 2756 Bordetella bronchiseptica 518 1331258 species 0 1 Bordetella pseudohinzii 1608 1283 Bordetella trematum 0 1 species 123899 645 0 1 genus 1100891 species 0 1 Paenalcaligenes hominis 645 643674 0 2 genus 2973 Alcaligenes 1 507 16 511 0 1 species 2957 Alcaligenes faecalis 1 90243 20 442 Oligella 0 2 genus 90245 422 Oligella urethralis 0 1 species Orrella 1598 genus 2 0 25 1 1921582 1 0 species 1573 Orrella dioscoreae 1851544 Taylorella 1529 genus 0 3 2 1 29574 species 1 0 Taylorella asinigenitalis 666 84590 861 Taylorella equigenitalis 1 0 species 29575 6 0 genus 17628 Achromobacter 1 222 671 2626865 2137 1 0 no rank 1758194 0 1 species 2137 Achromobacter sp. AONIH1 32002 species 0 1 Achromobacter denitrificans 3562 species 1 0 Achromobacter insolitus 1535 217204 217203 species 0 1 Achromobacter spanius 2966 85698 Achromobacter xylosoxidans 6757 species 1 0 6 305976 1 genus 0 2 Pusillimonas 738 2640016 732 no rank 1 0 species 1 0 Pusillimonas sp. T7-7 732 1007105 16601 0 17 no rank 224471 Mitsuaria 1764 genus 0 2 97 1 65047 1667 1 0 no rank 2648776 Mitsuaria sp. 7 1667 species 0 1 1658665 2046 Roseateles 2 0 genus 1 93681 40 2006 Roseateles depolymerans 1 0 species 76731 genus 0 2 Paucibacter 1572 60 1 318147 2642959 1512 0 1 no rank 1768242 1 0 species 1512 Paucibacter sp. KCTC 42545 1 88 62 1720 Leptothrix 2 0 genus Leptothrix cholodnii 1658 species 1 0 34029 Rubrivivax 2382 genus 2 0 87 28067 1 28068 1 0 species 2295 Rubrivivax gelatinosus 1 0 species 1514 [Polyangium] brachysporum 413882 0 2 genus 1608 Rhizobacter 1 212743 43 species 0 1 Rhizobacter gummiphilus 1565 946333 1 32012 44 2 0 genus 2268 Thiomonas 926 2224 Thiomonas intermedia 0 1 species Methylibium 1727 genus 2 0 37 1 316612 105560 1 0 species 1690 Methylibium petroleiphilum Comamonadaceae 65862 family 59 0 1057 1 80864 302 1 80865 Delftia 8345 genus 5 0 2613839 no rank 0 2 4244 1920191 species 0 1 Delftia sp. HK171 1954 742013 species 0 1 Delftia sp. Cs1-4 2290 80866 species 0 1 Delftia acidovorans 1853 180282 Delftia tsuruhatensis 1946 species 1 0 1 47420 70 4 0 genus 4111 Hydrogenophaga 1763535 0 1 species 935 Hydrogenophaga crassostreae 2610897 2 0 no rank 3106 795665 0 1 species 1808 Hydrogenophaga sp. PBC Hydrogenophaga sp. RAC07 1298 species 1 0 1842537 1 219181 19 3 0 genus 2847 Ottowia 2645081 no rank 1 0 1369 0 1 species 1369 Ottowia sp. oral taxon 894 1658672 species 1 0 Ottowia sp. KADR8-3 1459 2109914 1819 genus 2 0 2490452 1458426 Comamonadaceae bacterium B1 969 species 0 1 1 0 species 850 Comamonadaceae bacterium A1 1458425 9 0 genus 11164 Acidovorax 12916 1 396 2684926 no rank 0 4 5665 358220 1540 Acidovorax sp. KKS102 0 1 species Acidovorax sp. T1 1260 species 1 0 1858609 Acidovorax sp. JS42 1309 species 0 1 232721 species 1 0 Acidovorax sp. RAC01 1556 1842533 1629 Acidovorax avenae 0 1 species 80867 1000 Acidovorax sp. NA3 1 0 species 553814 1 0 species 1267 Acidovorax citrulli 80869 721785 0 1 species 1207 Acidovorax ebreus genus 3 0 Polaromonas 2603 30 1 52972 1121 no rank 1 0 2638319 Polaromonas sp. JS666 1121 species 0 1 296591 216465 0 1 species 1452 Polaromonas naphthalenivorans 5 238749 1 genus 0 2 Diaphorobacter 1321 species 0 1 Diaphorobacter polyhydroxybutyrativorans 1316 1546149 1 201096 21 0 2 genus 1921 Alicycliphilus 179636 1900 Alicycliphilus denitrificans 1 0 species 1590 Melaminivora 2 0 genus 1 1649468 36 1 0 no rank 1554 2641902 2109913 1554 Melaminivora sp. SC2-9 0 1 species 1619 genus 0 1 2678886 2116657 species 1 0 Melaminivora sp. SC2-7 1619 0 2 genus 697 Candidatus Symbiobacter 1 1436289 6 1436290 691 Candidatus Symbiobacter mobilis 0 1 species 34072 1 248 5 0 genus 9209 Variovorax 436515 0 1 species 1882 Variovorax boronicumulans 2908 0 2 no rank 663243 Variovorax sp. PMC12 2037 species 0 1 2126319 871 Variovorax sp. PAMC 28711 0 1 species 1795631 0 1 species 4171 Variovorax paradoxus 34073 66 1 28065 Rhodoferax 5013 genus 0 5 Rhodoferax saidenbachensis 1042 species 0 1 1484693 species 1 0 Rhodoferax ferrireducens 1045 192843 Rhodoferax antarcticus 1188 species 0 1 81479 Rhodoferax koreense 1672 species 1 0 1842727 17 1 364316 genus 0 2 Verminephrobacter 1357 364317 species 1 0 Verminephrobacter eiseniae 1340 2 0 genus 3100 Ramlibacter 1 174951 36 94132 Ramlibacter tataouinensis 3064 species 1 0 2 665874 1 genus 0 3 Limnohabitans 1184 2626134 no rank 2 0 1182 species 1 0 Limnohabitans sp. 63ED37-2 766 1678128 416 Limnohabitans sp. 103DPR2 0 1 species 1678129 5794 Comamonas 0 4 genus 1 283 62 1082851 Comamonas serinivorans 1386 species 1 0 1 0 species 2889 Comamonas testosteroni 285 1457 Comamonas kerstersii 1 0 species 225992 1 352450 25 0 2 genus 1111 Simplicispira Simplicispira sp. SC1-8 1086 species 0 1 2109915 742 119060 1 Burkholderiaceae 102905 family 0 83 216 93217 1 genus 0 10 Pandoraea 8568 656179 0 1 species 1278 Pandoraea faecigallinarum 93219 Pandoraea norimbergensis 889 species 0 1 93222 Pandoraea sputorum 766 species 1 0 656178 Pandoraea vervacti 915 species 0 1 445709 Pandoraea thiooxydans 711 species 1 0 Pandoraea pulmonicola 834 species 0 1 93221 93218 1 0 species 793 Pandoraea apista Pandoraea pnomenusa 1161 species 1 0 93220 573737 1005 Pandoraea oxalativorans 0 1 species 2556 1 32008 genus 41 0 Burkholderia 51854 2613784 9677 no rank 11 0 1239 Burkholderia sp. YI23 1 0 species 1097668 758796 1144 Burkholderia sp. RPE67 0 1 species Burkholderia sp. CCGE1003 923 species 1 0 640512 725 Burkholderia sp. PAMC 28687 1 0 species 1795874 1795043 Burkholderia sp. PAMC 26561 956 species 0 1 1740163 Burkholderia sp. Bp7605 717 species 1 0 species 1 0 Burkholderia sp. HB1 1062 1678678 1 0 species 612 Burkholderia sp. 2002721687 1468409 0 1 species 722 Burkholderia sp. KJ006 416344 640510 987 Burkholderia sp. CCGE1001 0 1 species 1740162 Burkholderia sp. Bp5365 590 species 0 1 111527 0 7 species group 7756 species 0 1 Burkholderia sp. MSMB0852 659 1637841 13373 Burkholderia mallei 602 species 1 0 342113 Burkholderia oklahomensis 1236 species 1 0 1815 Burkholderia thailandensis 0 1 species 57975 species 1 0 Burkholderia sp. MSMB0266 770 1637837 28450 1 0 species 1976 Burkholderia pseudomallei 1637831 Burkholderia sp. MSMB617WGS 698 species 1 0 28095 2616 Burkholderia gladioli 0 1 species species group 0 19 25488 87882 152480 995 Burkholderia ambifaria 1 0 species 87883 Burkholderia multivorans 1818 species 0 1 Burkholderia territorii 492 species 0 1 1503055 species 1 0 Burkholderia pyrrocinia 576 60550 101571 species 0 1 Burkholderia ubonensis 2881 1503054 836 Burkholderia stagnalis 1 0 species 488446 Burkholderia latens 621 species 0 1 95486 3755 Burkholderia cenocepacia 0 1 species 488447 Burkholderia contaminans 695 species 1 0 species 0 1 Burkholderia diffusa 744 488732 1235 Burkholderia stabilis 1 0 species 95485 1302 Burkholderia lata 1 0 species 482957 292 Burkholderia cepacia 4553 species 0 1 species 1 0 [Pseudomonas] mesoacidophila 834 265293 Burkholderia seminalis 660 species 0 1 488731 Burkholderia pseudomultivorans 957 species 0 1 1207504 Burkholderia dolosa 707 species 1 0 152500 488729 Burkholderia metallica 536 species 1 0 60552 0 1 species 1291 Burkholderia vietnamiensis 41899 Burkholderia plantarii 1375 species 1 0 337 2386 Burkholderia glumae 1 0 species genus 5 0 Ralstonia 11138 216 1 48736 329 species 0 1 Ralstonia pickettii 2529 190721 0 1 species 1371 Ralstonia insidiosa 105219 Ralstonia mannitolilytica 1742 species 0 1 1 0 species 5280 Ralstonia solanacearum 305 1827195 1018 0 1 genus 1 0 species 1018 Burkholderia sp. RPE64 758793 557 genus 1 0 2571159 Paraburkholderia rhizoxinica 557 species 0 1 412963 44013 genus 0 3 879 576610 species 1 0 Polynucleobacter necessarius 199 576611 Polynucleobacter asymbioticus 301 species 0 1 1835254 379 Polynucleobacter duraquae 0 1 species 1 106589 535 0 9 genus 14332 Cupriavidus 0 1 species 1720 Cupriavidus sp. USMAA1020 367825 2640874 3792 2 0 no rank 876364 1948 Cupriavidus sp. USMAA2-4 1 0 species 1389192 species 0 1 Cupriavidus sp. USMAHM13 1844 248026 species 1 0 Cupriavidus pinatubonensis 1134 Cupriavidus gilardii 1354 species 1 0 82541 Cupriavidus necator 2867 species 0 1 106590 Cupriavidus metallidurans 1273 species 0 1 119219 68895 Cupriavidus basilensis 1657 species 0 1 1 1822464 227 0 12 genus 13817 Paraburkholderia species 0 1 Paraburkholderia phenoliruptrix 1070 252970 36873 species 1 0 Paraburkholderia xenovorans 1199 169430 1056 Paraburkholderia hospita 0 1 species species 0 1 Paraburkholderia fungorum 1009 134537 1276 Paraburkholderia phymatum 1 0 species 148447 2615204 no rank 0 1 997 1926494 997 Paraburkholderia sp. SOS3 0 1 species 311230 0 1 species 1376 Paraburkholderia terrae 1126 Paraburkholderia phytofirmans 1 0 species 261302 Paraburkholderia sprentiae 1109 species 1 0 948107 2097 Paraburkholderia caribensis 1 0 species 75105 2026199 1275 Paraburkholderia aromaticivorans 0 1 species 260 75682 1 Oxalobacteraceae 43023 family 0 29 Oxalobacter 13490 genus 0 2 2 1 846 847 1 0 species 13488 Oxalobacter formigenes 1 202907 98 0 4 genus 5097 Collimonas 279113 0 1 species 1436 Collimonas pratensis 279058 species 0 1 Collimonas arenae 1944 1 0 species 1619 Collimonas fungivorans 158899 295 1 963 Herbaspirillum 7048 genus 0 6 92645 1628 Herbaspirillum frisingense 1 0 species 341045 0 1 species 973 Herbaspirillum hiltneri 80842 species 0 1 Herbaspirillum rubrisubalbicans 1398 2624150 949 1 0 no rank 949 Herbaspirillum sp. meg3 0 1 species 2025949 964 1 0 species 1805 Herbaspirillum seropedicae 73 29580 1 Janthinobacterium 7896 genus 0 7 5073 no rank 4 0 2610881 Janthinobacterium sp. B9-8 1227 species 1 0 1236179 Janthinobacterium sp. 1_2014MBL_MicDiv 1454 species 1 0 1644131 1 0 species 1761 Janthinobacterium sp. LM6 1938606 375286 Janthinobacterium sp. Marseille 631 species 1 0 1496 Janthinobacterium svalbardensis 1 0 species 368607 Janthinobacterium agaricidamnosum 1254 species 0 1 55508 genus 0 3 Herminiimonas 794 13 1 303379 1809410 0 1 species 347 Herminiimonas arsenitoxidans 204773 Herminiimonas arsenicoxydans 434 species 1 0 149698 1 181 0 6 genus 8438 Massilia 3285 2 0 no rank 2609279 1567 Massilia sp. WG5 1 0 species 1707785 Massilia sp. NR 4-1 1718 species 1 0 1678028 1141883 species 0 1 Massilia putida 1600 2045208 Massilia sp. B2 1284 species 1 0 2072590 2088 Massilia sp. ZMN-3 0 1 species no rank 0 2 1846 80841 1469502 0 1 species 546 Burkholderiales bacterium GJ-E10 species 0 1 Burkholderiales bacterium YL45 1300 1834205 33809 no rank 0 2 1163 543913 species 0 1 beta proteobacterium CB 249 1904640 914 Betaproteobacteria bacterium GR16-43 1 0 species 42 0 order 16956 Nitrosomonadales 1 32003 166 0 12 family 5534 Nitrosomonadaceae 206379 1 49 genus 0 7 Nitrosomonas 3818 116 1 914 1495 no rank 0 2 2609265 261292 0 1 species 965 Nitrosomonas sp. Is79A3 153948 species 1 0 Nitrosomonas sp. AL212 530 0 1 species 682 Nitrosomonas communis 44574 915 590 Nitrosomonas europaea 0 1 species 916 305 Nitrosomonas eutropha 0 1 species 630 Nitrosomonas ureae 0 1 species 44577 Nitrosospira 1667 genus 0 4 20 1 35798 Nitrosospira briensis 890 species 1 0 35799 0 1 species 436 Nitrosospira multiformis 1231 species 0 1 Nitrosospira lacus 321 1288494 2772226 4 0 family 1550 18 1778653 1 genus 2 0 Sulfuriferula 837 2637784 1 0 no rank 819 1 0 species 819 Sulfuriferula sp. AH1 1985873 713 Sulfuricella 2 0 genus 1 935200 41 1 0 species 672 Sulfuricella denitrificans 649841 Gallionellaceae 1609 family 0 5 71 1 90627 Gallionella 569 genus 2 0 14 1 96 0 1 species 555 Gallionella capsiferriformans 370405 23 1 314343 Sideroxydans 969 genus 0 2 63745 species 1 0 Sideroxydans lithotrophicus 946 0 12 family 4452 Methylophilaceae 1 32011 42 genus 3 0 Methylotenera 1282 7 359407 1 1055487 0 1 species 919 Methylotenera versatilis 359408 Methylotenera mobilis 356 species 1 0 genus 1 0 339 16 2630143 no rank 1 0 339 1662285 339 Methylophilus sp. TWE2 0 1 species 999 genus 2 0 1679002 1581557 species 1 0 Candidatus Methylopumilus planktonicus 561 species 0 1 Candidatus Methylopumilus turicensis 438 1581680 6 1 404 Methylobacillus 617 genus 2 0 405 species 1 0 Methylobacillus flagellatus 611 0 3 genus 1173 Methylovorus 1 81682 33 0 1 no rank 577 2634027 887061 1 0 species 577 Methylovorus sp. MP688 563 Methylovorus glucosotrophus 1 0 species 266009 40 1 2008793 Sterolibacteriaceae 2709 family 5 0 genus 0 2 Sulfuritalea 1146 35 1 1054211 748811 1111 Sulfuritalea hydrogenivorans 0 1 species genus 2 0 Methyloversatilis 1523 19 1 378210 2639971 1504 no rank 1 0 1842540 1504 Methyloversatilis sp. RAC08 0 1 species family 0 3 Thiobacillaceae 936 11 1 2008790 genus 2 0 Thiobacillus 925 8 1 919 36861 917 Thiobacillus denitrificans 0 1 species 119066 no rank 11 0 9530 189384 genus 1 0 50 1 0 species 50 Candidatus Tremblaya princeps 189385 15 33055 1 genus 6 0 Kinetoplastibacterium 6861 233181 Kinetoplastibacterium blastocrithidii 1118 species 1 0 994692 species 0 1 Candidatus Kinetoplastibacterium desouzaii 1939 994696 species 0 1 Candidatus Kinetoplastibacterium oncopeltii 379 1 0 species 1404 Candidatus Kinetoplastibacterium crithidii 33056 species 0 1 Candidatus Kinetoplastibacterium galatii 2006 994695 Candidatus Accumulibacter 1285 genus 0 2 11 1 327159 327160 1274 Candidatus Accumulibacter phosphatis 0 1 species 1381133 1 0 genus 1023 669502 0 1 species 1023 Candidatus Profftella armatura 1301080 311 genus 1 0 1160784 311 Candidatus Nasuia deltocephalinicola 1 0 species 1 206351 368 30948 Neisseriales 36 0 order 17056 Neisseriaceae 22 0 family 1 481 187 541 genus 1 0 71 541 Simonsiella muelleri 1 0 species 72 genus 3 0 Vitreoscilla 1367 41 1 59 Vitreoscilla filiformis 1009 species 0 1 63 2627922 317 no rank 1 0 96942 species 0 1 Vitreoscilla sp. C1 317 0 1 no rank 1058 421605 2052837 species 1 0 Neisseriaceae bacterium DSM 100970 1058 12051 Neisseria 12 0 genus 1 482 214 495 species 0 1 Neisseria elongata 705 485 841 Neisseria gonorrhoeae 0 1 species 1 0 species 2788 Neisseria meningitidis 487 490 1 0 species 796 Neisseria sicca 1234 Neisseria sp. 10023 0 1 species 1853278 486 species 1 0 Neisseria lactamica 1490 697 Neisseria zoodegmatis 0 1 species 326523 830 Neisseria mucosa 1 0 species 488 Neisseria weaveri 540 species 1 0 28091 2623750 no rank 2 0 1916 612 Neisseria sp. 10022 1 0 species 1853276 0 1 species 1304 Neisseria sp. KEM232 655307 genus 0 2 Snodgrassella 905 1 1 1193515 Snodgrassella alvi 904 species 0 1 1196083 2 0 genus 947 Eikenella 1 538 9 species 1 0 Eikenella corrodens 938 539 244 1 1499392 family 13 0 Chromobacteriaceae 13524 no rank 0 4 6797 90153 123 1 535 Chromobacterium 6797 genus 0 4 1108595 species 1 0 Chromobacterium vaccinii 2858 536 Chromobacterium violaceum 1858 species 0 1 2641838 0 1 no rank 1958 2059672 1958 Chromobacterium sp. ATCC 53434 1 0 species 0 2 genus 1370 Aquaspirillum 1 187 42 1328 0 1 no rank 2620219 0 1 species 1328 Aquaspirillum sp. LM1 1938604 1 568394 32 1542 Pseudogulbenkiania 0 2 genus 2642558 no rank 0 1 1510 species 1 0 Pseudogulbenkiania sp. NH8B 1510 748280 1 168470 9 0 2 genus 1951 Laribacter 1942 Laribacter hongkongensis 0 1 species 168471 Jeongeupia 1620 genus 0 2 32 1 885864 2619593 1588 0 1 no rank 1906741 Jeongeupia sp. USM3 1588 species 0 1 Rhodocyclales 17621 order 22 0 238 206389 1 1 2008794 323 12870 Zoogloeaceae 0 12 family 1 12960 199 0 5 genus 4971 Azoarcus 2596 no rank 2 0 2629479 748247 0 1 species 1246 Azoarcus sp. KH32C 198107 Azoarcus sp. CIB 1350 species 0 1 418699 1075 Azoarcus olearius 1 0 species 2067960 0 1 species 1101 Azoarcus sp. SY39 199 1 33057 Thauera 7576 genus 6 0 2609274 3670 2 0 no rank 0 1 species 1989 Thauera sp. MZ1T 85643 2005884 Thauera sp. K11 1681 species 0 1 1 0 species 1069 Thauera chlorobenzoica 96773 1134435 0 1 species 1544 Thauera humireducens 1094 Thauera aromatica 0 1 species 59405 79 1 75787 family 0 6 Rhodocyclaceae 3692 1862 Azospira 2 0 genus 146937 1 30 146939 species 0 1 Azospira oryzae 1832 2 0 genus 1017 Aromatoleum 1 551759 20 0 1 species 997 Aromatoleum aromaticum 551760 75788 0 1 no rank 734 1898103 species 1 0 Rhodocyclaceae bacterium 734 Azonexaceae 821 family 0 3 25 1 2008795 1 73029 9 796 Dechloromonas 2 0 genus 1 0 species 787 Dechloromonas aromatica 259537 2498710 clade 0 5 1690 67814 phylum 0 5 1690 class 5 0 Caldisericia 1690 15 1 693071 693072 1 6 0 4 order 1675 Caldisericales 0 3 family 1669 Caldisericaceae 1 693073 4 2 0 genus 1665 Caldisericum 1 693074 3 693075 1662 Caldisericum exile 1 0 species 1930617 1355 phylum 0 5 5 0 class 1355 Calditrichae 1 1962850 4 order 4 0 Calditrichales 1351 15 1 1962852 1 1962854 7 0 3 family 1336 Calditrichaceae 2 0 genus 1329 Caldithrix 1 187144 33 0 1 species 1296 Caldithrix abyssi 187145 phylum 10 0 7479 200930 1 68337 16 10 0 class 7479 Deferribacteres 7463 Deferribacterales 9 0 order 1 191393 11 0 8 family 7452 Deferribacteraceae 191394 1 39 1 117999 1 933 Denitrovibrio 2 0 genus 932 Denitrovibrio acetiphilus 1 0 species 118000 genus 0 2 Calditerrivibrio 1936 1 545865 1 477976 0 1 species 1935 Calditerrivibrio nitroreducens 1 0 genus 3067 53572 197162 0 1 species 3067 Deferribacter desulfuricans 1 2351 1 1477 Flexistipes 0 2 genus 2352 1 0 species 1476 Flexistipes sinusarabici 200940 phylum 9 0 7435 4 1 67799 Thermodesulfobacteria 7435 class 9 0 188710 1 18 0 8 order 7431 Thermodesulfobacteriales family 0 7 Thermodesulfobacteriaceae 7413 8 1 188711 1 1 1740 Thermodesulfobacterium 4773 genus 0 3 Thermodesulfobacterium commune 1030 species 0 1 1741 species 0 1 Thermodesulfobacterium geofontis 3742 1295609 Thermodesulfatator 829 genus 2 0 2 1 241192 171695 827 Thermodesulfatator indicus 0 1 species 1803 genus 0 1 444090 1653476 species 1 0 Caldimicrobium thiodismutans 1803 clade 1729 0 9979448 1783272 1798711 0 148 clade 123239 Cyanobacteria 123239 phylum 0 148 21 1117 1 1301283 33289 subclass 0 44 Chroococcales 23018 order 25 0 6 1 1118 1 1890452 4 1846 Cyanobacteriaceae 0 3 family Cyanobacterium 1842 genus 0 2 2 102234 1 species 1 0 Cyanobacterium aponinum 1840 379064 3868 Microcystaceae 4 0 family 1890449 1 3 5 1125 1 genus 0 3 Microcystis 3865 1339 0 1 no rank 2643300 1339 Microcystis sp. MC19 0 1 species 1967666 1126 species 1 0 Microcystis aeruginosa 2521 7 1 1890450 family 10 0 Aphanothecaceae 9844 92682 934 no rank 2 0 1 76023 2 2 0 genus 934 Halothece 2632878 no rank 0 1 932 932 Halothece sp. PCC 7418 0 1 species 65093 genus 0 2 2147 2546365 2147 2 0 species 2546366 0 1 strain 1121 Cyanothece sp. PCC 8801 41431 Cyanothece sp. PCC 8802 1026 strain 0 1 395962 263510 1885 genus 0 1 species 1 0 1885 2546360 1885 Cyanothece sp. ATCC 51142 0 1 strain 43989 2865 2 0 genus 28070 species 0 1 1186 2546359 497965 strain 0 1 Cyanothece sp. PCC 7822 1186 1 0 species 1679 2546356 strain 1 0 Cyanothece sp. PCC 7424 1679 65393 4 1 1453359 genus 2 0 Candidatus Atelocyanobacterium 2006 Candidatus Atelocyanobacterium thalassa 2002 species 1 0 713887 7454 Chroococcaceae 7 0 family 1 1890464 21 5 1 102231 Gloeocapsa 674 genus 0 2 1 0 no rank 669 2623012 669 Gloeocapsa sp. PCC 7428 0 1 species 1173026 Chondrocystis 1126 genus 0 2 1 1 268175 2648896 1125 0 1 no rank 2005460 species 1 0 Chondrocystis sp. NIES-4102 1125 669357 genus 0 2 5633 2 0 no rank 5633 2625037 1617448 0 1 species 2175 Geminocystis sp. NIES-3709 Geminocystis sp. NIES-3708 3458 species 0 1 1615909 Oscillatoriales 10271 order 19 0 39 1 1150 3 0 family 1218 Coleofasciculaceae 1892251 1 6 7 1 63132 Geitlerinema 1212 genus 0 2 2648775 0 1 no rank 1205 1173025 1 0 species 1205 Geitlerinema sp. PCC 7407 family 3 0 Cyanothecaceae 869 14 1 1892249 43988 1 61 2 0 genus 855 Cyanothece 794 0 1 no rank 2649277 species 0 1 Cyanothece sp. PCC 7425 794 395961 Oscillatoriaceae 2342 family 0 5 18 1 1892254 1158 genus 0 2 1478 528 Oscillatoria acuminata 1 0 species 118323 482564 950 Oscillatoria nigro-viridis 0 1 species 1 1155738 12 2 0 genus 846 Moorea 1155739 0 1 species 834 Moorea producens family 2 0 Gomontiellaceae 1473 77 1 1892255 241421 1396 genus 1 0 241425 species 0 1 Crinalium epipsammum 1396 family 5 0 Microcoleaceae 4330 1 1 1892252 6 44471 1 Microcoleus 1443 genus 0 2 1437 no rank 0 1 2642155 1173027 species 1 0 Microcoleus sp. PCC 7113 1437 2 1 1205 genus 2 0 Trichodesmium 2886 2884 Trichodesmium erythraeum 0 1 species 1206 1 1890424 290 46498 Synechococcales 0 55 order 5 0 family 18841 Prochloraceae 1 1213 13 9 1 1218 genus 4 0 Prochlorococcus 18828 3612 0 2 no rank 2627481 1501268 2237 Prochlorococcus sp. MIT 0604 1 0 species Prochlorococcus sp. MIT 0801 1375 species 1 0 1501269 Prochlorococcus marinus 15207 species 0 1 1219 3784 Leptolyngbyaceae 0 6 family 1 1890438 10 8 1 47251 Leptolyngbya 3774 genus 5 0 1184 782 Leptolyngbya boryana 1 0 species 2650499 2984 no rank 0 3 1037 Leptolyngbya sp. PCC 7376 1 0 species 111781 1752064 822 Leptolyngbya sp. NIES-3755 1 0 species 1125 Leptolyngbya sp. O-77 0 1 species 1080068 1 1890426 94 19368 Synechococcaceae 0 33 family 3 0 genus 3022 Cyanobium 167375 1 50 2627006 no rank 0 1 1413 1413 Cyanobium sp. NIES-981 0 1 species 1851505 species 1 0 Cyanobium gracile 1559 59930 233 1129 1 Synechococcus 15046 genus 26 0 no rank 23 0 13854 2626047 316279 Synechococcus sp. CC9902 346 species 0 1 29410 species 0 1 Synechococcus sp. WH 8103 768 321327 1 0 species 1159 Synechococcus sp. JA-3-3Ab 0 1 species 806 Synechococcus sp. KORDI-49 585423 582 Synechococcus sp. PCC 7002 1 0 species 32049 585425 Synechococcus sp. KORDI-52 556 species 0 1 Synechococcus sp. PCC 7003 624 species 1 0 374981 110662 0 1 species 762 Synechococcus sp. CC9605 0 1 species 442 Synechococcus sp. PCC 73109 374982 662 Synechococcus sp. RCC307 1 0 species 316278 166314 1 0 species 730 Synechococcus sp. WH 8109 species 0 1 Synechococcus sp. CC9311 221 64471 species 0 1 Synechococcus sp. NIES-970 465 1827144 32051 500 Synechococcus sp. WH 7803 1 0 species 1916956 1 0 species 664 Synechococcus sp. SynAce01 232 Synechococcus sp. PCC 6312 0 1 species 195253 species 0 1 Synechococcus sp. WH 8102 712 84588 Synechococcus sp. PCC 7502 929 species 0 1 1173263 642 Synechococcus sp. UTEX 2973 1 0 species 1350461 195498 0 1 species 364 Synechococcus sp. PCC 7117 321332 688 Synechococcus sp. JA-2-3B'a(2-13) 0 1 species Synechococcus sp. PCC 8807 426 species 1 0 195248 1280380 0 1 species 574 Synechococcus sp. KORDI-100 393 Synechococcus lividus 0 1 species 33070 Synechococcus elongatus 566 species 1 0 32046 146785 0 1 genus 457 146786 1 0 species 457 Thermosynechococcus elongatus Dactylococcopsis 749 genus 0 2 2 1 13034 292566 species 0 1 Dactylococcopsis salina 747 704 2 0 family 1890436 2 0 genus 704 Pseudanabaena 1152 1 1 2593292 703 0 1 no rank 82654 1 0 species 703 Pseudanabaena sp. PCC 7367 2303730 0 2 family 675 genus 0 2 Halomicronema 675 4 1 170610 1209493 1 0 species 671 Halomicronema hongdechloris 4 0 family 1908 1890428 1142 1 26 0 4 genus 1908 Synechocystis 2640012 1882 no rank 0 3 564 Synechocystis sp. IPPAS B-1465 0 1 species 2116702 1148 0 1 species 564 Synechocystis sp. PCC 6803 1147 754 Synechocystis sp. PCC 6714 0 1 species 1890429 928 2 0 family 2 0 genus 928 Acaryochloris 1 155977 4 155978 species 1 0 Acaryochloris marina 924 42 1161 1 order 0 31 Nostocales 33951 family 17 0 Nostocaceae 18041 39 1 1162 79 1 1177 Nostoc 10694 genus 0 10 1306274 Nostoc flagelliforme 2036 species 0 1 272131 Nostoc punctiforme 1059 species 0 1 7 0 no rank 7520 2593658 1 0 species 1199 Nostoc sp. CENA543 1869241 28072 Nostoc sp. PCC 7524 724 species 0 1 species 1 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1254 1261031 1618022 species 1 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1007 317936 0 1 species 871 Nostoc sp. PCC 7107 103690 1071 Nostoc sp. PCC 7120 0 1 species 1751286 species 1 0 Nostoc sp. NIES-3756 1394 264688 2839 0 2 genus 0 1 species 1797 Trichormus azollae 1164 264691 1042 Trichormus variabilis 1 0 species Anabaena 4469 genus 4 0 6 1163 1 species 0 1 Anabaena cylindrica 1302 1165 0 2 no rank 3161 2619674 46234 Anabaena sp. 90 979 species 0 1 Anabaena sp. WA102 2182 species 1 0 1647413 1 1185 31 3922 Rivulariaceae 3 0 family genus 0 2 Rivularia 3891 1 1 373984 1 0 no rank 3890 2676603 373994 Rivularia sp. PCC 7116 3890 species 0 1 10472 8 0 family 2661849 56 1 1186 genus 8 0 Calothrix 10472 species 0 1 Calothrix parietina 1385 32054 6 0 no rank 9031 2619626 species 1 0 Calothrix sp. NIES-4101 1783 2005461 Calothrix sp. NIES-3974 1021 species 0 1 2005462 Calothrix sp. NIES-4071 3202 species 1 0 2005469 995 Calothrix sp. 336/3 0 1 species 1337936 99598 species 1 0 Calothrix sp. PCC 7507 952 1954171 1078 Calothrix sp. NIES-2098 1 0 species 1219117 0 1 no rank 599 1940762 599 Nostocales cyanobacterium HT-58-2 1 0 species 875 family 0 1 1892263 1190 875 0 1 genus 494603 875 0 1 no rank species 1 0 Fischerella sp. NIES-3754 875 1752063 1890505 795 0 3 order 795 Chroococcidiopsidaceae 3 0 family 1 1890528 4 54298 1 5 2 0 genus 791 Chroococcidiopsis 786 Chroococcidiopsis thermalis 0 1 species 54299 1983111 0 1 no rank 1481 species 0 1 cyanobacterium endosymbiont of Epithemia turgida 1481 718217 1 307596 21 6 0 class 2974 Gloeobacteria 2953 Gloeobacterales 5 0 order 1 307595 40 22 1890422 1 family 0 4 Gloeobacteraceae 2913 1 33071 33 3 0 genus 2891 Gloeobacter species 1 0 Gloeobacter kilaueensis 1117 1416614 0 1 species 1741 Gloeobacter violaceus 33072 7 0 order 4230 Pleurocapsales 1 52604 4 1 1890500 3 387 Hyellaceae 3 0 family 2 0 genus 384 Pleurocapsa 1 44474 5 54308 379 Pleurocapsa minor 1 0 species 1890498 3839 3 0 family 9 1 102115 genus 3 0 Stanieria 3839 2174 Stanieria cyanosphaera 0 1 species 102116 no rank 0 1 1656 2642663 Stanieria sp. NIES-3757 1656 species 0 1 1807358 phylum 0 5 809 67819 1 1663419 5 809 Fimbriimonadia 0 5 class Fimbriimonadales 804 order 4 0 4 1663425 1 family 3 0 Fimbriimonadaceae 800 6 1 1663426 3 1005038 1 genus 0 2 Fimbriimonas 794 1005039 species 1 0 Fimbriimonas ginsengisoli 791 1297 30850 0 36 phylum 30850 Deinococci 0 36 class 1 188787 202 2762275 order 3 0 1056 1 332247 25 1056 Trueperaceae 0 3 family 332248 1 8 0 2 genus 1031 Truepera 1023 Truepera radiovictrix 1 0 species 332249 118964 1 267 15 0 order 19134 Deinococcales Deinococcaceae 18867 family 0 14 146 183710 1 251 1 1298 genus 0 13 Deinococcus 18721 1383 0 1 no rank 2623546 2080419 species 1 0 Deinococcus sp. NW-56 1383 309887 0 1 species 1296 Deinococcus maricopensis 310783 Deinococcus deserti 1281 species 1 0 species 1 0 Deinococcus radiodurans 1646 1299 432329 0 1 species 1400 Deinococcus peraridilitoris 1768108 species 1 0 Deinococcus actinosclerus 1613 species 0 1 Deinococcus geothermalis 1330 68909 1309411 species 0 1 Deinococcus soli Cha et al. 2016 1747 Deinococcus swuensis 1879 species 1 0 1182571 species 1 0 Deinococcus gobiensis 1863 502394 1182568 1 0 species 1300 Deinococcus puniceus Deinococcus proteolyticus 1732 species 0 1 55148 Thermales 10458 order 17 0 167 1 68933 1 188786 58 10291 Thermaceae 0 16 family 6 1 186191 Marinithermus 1103 genus 2 0 0 1 species 1097 Marinithermus hydrothermalis 186192 18 1 208447 Oceanithermus 1576 genus 0 2 Oceanithermus profundus 1558 species 0 1 187137 Meiothermus 2301 genus 3 0 14 1 65551 52022 0 1 species 887 Meiothermus silvanus Meiothermus ruber 1400 species 1 0 277 1 270 137 5253 Thermus 0 8 genus 2619321 719 no rank 0 1 Thermus sp. CCB_US3_UF1 719 species 1 0 1111069 Thermus aquaticus 790 species 0 1 271 1 0 species 550 Thermus parvatiensis 456163 species 0 1 Thermus oshimai 618 56957 56956 species 0 1 Thermus brockianus 558 274 Thermus thermophilus 1424 species 1 0 37636 Thermus scotoductus 457 species 0 1 1 1239 764 7804596 Firmicutes 0 729 phylum Bacilli 1432706 class 433 0 540 1 91061 0 266 order 773261 Bacillales 1385 1 1355 118362 Paenibacillaceae 0 46 family 1 186822 263 7464 Brevibacillus 4 0 genus 1 55080 37 1 0 species 3891 Brevibacillus laterosporus 1465 species 0 1 Brevibacillus brevis 2330 1393 1 0 species 1206 Brevibacillus formosus 54913 1 76632 16 2 0 genus 4487 Thermobacillus 4471 Thermobacillus composti 1 0 species 377615 85151 4050 no rank 3 0 Aneurinibacillus 4050 genus 0 3 20 1 55079 2642329 1608 1 0 no rank 1 0 species 1608 Aneurinibacillus sp. XH2 1450761 2422 Aneurinibacillus soli 0 1 species 1500254 1 44249 1128 102098 Paenibacillus 0 36 genus 159743 species 1 0 Paenibacillus terrae 1984 1616788 species 1 0 Paenibacillus bovis 2845 1126833 3201 Paenibacillus beijingensis 1 0 species 365617 0 1 species 2252 Paenibacillus sabinae 59893 Paenibacillus peoriae 1671 species 0 1 1534 Paenibacillus crassostreae 0 1 species 1763538 2622 Paenibacillus yonginensis 0 1 species 1462996 1870820 3085 Paenibacillus ihbetae 0 1 species 2704 Paenibacillus xylanexedens 0 1 species 528191 185978 13 0 no rank 34653 1536769 Paenibacillus sp. FSL P4-0081 3074 species 0 1 1566358 Paenibacillus sp. IHBB 10380 1706 species 0 1 1707 Paenibacillus sp. FSL H7-0737 0 1 species 1536775 Paenibacillus sp. JDR-2 2669 species 1 0 324057 Paenibacillus sp. FSL H7-0357 3067 species 1 0 1536774 1536773 Paenibacillus sp. FSL R7-0331 3650 species 1 0 species 0 1 Paenibacillus sp. FSL R7-0273 3550 1536772 1695218 2601 Paenibacillus sp. 32O-W 0 1 species 0 1 species 1591 Paenibacillus sp. lzh-N1 2069255 1536771 Paenibacillus sp. FSL R5-0912 3311 species 0 1 1870819 3692 Paenibacillus sp. BIHB4019 0 1 species 481743 species 1 0 Paenibacillus sp. Y412MC10 2427 0 1 species 1608 Paenibacillus sp. FSL R5-0345 1536770 169760 0 1 species 4372 Paenibacillus stellifer 414771 3897 Paenibacillus donghaensis 1 0 species 162209 Paenibacillus naphthalenovorans 1944 species 1 0 Paenibacillus kribbensis 1936 species 1 0 172713 species group 1 0 3489 2044880 Paenibacillus riograndensis 3489 species 1 0 483937 1178515 0 1 species 2145 Paenibacillus swuensis 1716 Paenibacillus odorifer 0 1 species 189426 1406 1 0 species 5819 Paenibacillus polymyxa 61624 Paenibacillus mucilaginosus 5023 species 0 1 species 1 0 Paenibacillus graminis 3127 189425 Paenibacillus borealis 2973 species 1 0 160799 1464 1 0 species 2565 Paenibacillus larvae 44251 0 1 species 5413 Paenibacillus durus 2 1 186824 family 4 0 Thermoactinomycetaceae 1697 1677050 1 39 2 0 genus 1678 Novibacillus Novibacillus thermophilus 1639 species 0 1 1471761 genus 0 1 Laceyella 17 292635 family 0 9 Listeriaceae 31562 52 1 186820 2 0 genus 2660 Brochothrix 1 2755 3 2756 0 1 species 2657 Brochothrix thermosphacta 233 1637 1 Listeria 28850 genus 0 6 0 1 species 3678 Listeria innocua 1642 1639 Listeria monocytogenes 9866 species 1 0 7054 Listeria ivanovii 0 1 species 1638 Listeria seeligeri 3835 species 1 0 1640 0 1 species 4184 Listeria welshimeri 1643 family 0 118 Bacillaceae 370859 991 1 186817 1 0 genus 2423 1055323 2423 Aeribacillus pallidus 0 1 species 33936 genus 5 0 14748 2675234 3705 Bacillus lehensis 1 0 species 300825 0 1 species 3274 Bacillus clausii 79880 79885 species 0 1 Bacillus pseudofirmus 2436 86665 Bacillus halodurans 1515 species 1 0 3818 Bacillus krulwichiae 1 0 species 199441 1 182709 1 0 2 genus 8613 Oceanobacillus 182710 0 1 species 8612 Oceanobacillus iheyensis 1 129337 1013 16583 Geobacillus 15 0 genus 5049 4 0 species group 1505648 1462 1 0 species 618 Geobacillus kaustophilus 33941 1 0 species 2401 Geobacillus thermoleovorans Geobacillus lituanicus 1319 species 0 1 169283 33938 0 1 species 711 Geobacillus thermocatenulatus 2642459 0 6 no rank 5835 581103 1 0 species 1907 Geobacillus sp. Y4.1MC1 550542 326 Geobacillus sp. Y412MC52 0 1 species 544556 322 Geobacillus sp. Y412MC61 1 0 species 2122 Geobacillus sp. WCH70 1 0 species 471223 691437 Geobacillus sp. C56-T3 574 species 0 1 1 0 species 584 Geobacillus sp. GHH01 1233873 0 1 species 901 Geobacillus subterraneus 129338 1422 Geobacillus stearothermophilus 1484 species 1 0 1921421 1 0 species 880 Geobacillus genomosp. 3 33940 Geobacillus thermodenitrificans 1421 species 1 0 400634 1 117 0 5 genus 20596 Lysinibacillus 2636778 no rank 0 1 5010 2072025 5010 Lysinibacillus sp. YS11 1 0 species 1 0 species 2971 Lysinibacillus fusiformis 28031 1145276 species 1 0 Lysinibacillus varians 3298 1421 0 1 species 9200 Lysinibacillus sphaericus 6539 2 0 genus 2675229 264697 2252 Bacillus muralis 0 1 species 1478 species 1 0 Bacillus simplex 4287 3679 0 1 genus 459532 Terribacillus aidingensis 3679 species 1 0 586416 1 84406 144 24512 Virgibacillus 0 7 genus 1482 Virgibacillus halodenitrificans 3458 species 0 1 8592 no rank 0 2 2620237 1 0 species 5263 Virgibacillus sp. 6R 1911587 403957 Virgibacillus sp. SK37 3329 species 0 1 1 0 species 2892 Virgibacillus phasianinus 2017483 163877 4809 Virgibacillus necropolis 0 1 species 1 0 species 4617 Virgibacillus pantothenticus 1473 3 1 29331 genus 2 0 Amphibacillus 3732 species 0 1 Amphibacillus xylanus 3729 1449 0 1 genus 1196 351195 1 0 species 1196 Salimicrobium jeotgali 1230341 2675230 genus 0 2 7149 859143 Bacillus kochii 3981 species 0 1 Bacillus oceanisediminis 3168 species 0 1 665099 Halobacillus 3726 genus 0 3 25 1 45667 1570 Halobacillus halophilus 2056 species 1 0 402384 0 1 species 1645 Halobacillus mangrovi 150247 1 62 12742 Anoxybacillus 6 0 genus species 0 1 Anoxybacillus gonensis 2591 198467 4801 no rank 2 0 2639704 1490057 2596 Anoxybacillus sp. B7M1 1 0 species species 0 1 Anoxybacillus sp. B2M1 2205 1490052 species 1 0 Anoxybacillus amylolyticus 1828 294699 33934 Anoxybacillus flavithermus 3460 species 1 0 1 1906945 5 2 0 genus 2385 Parageobacillus 2380 Parageobacillus thermoglucosidasius 1 0 species 1426 Lentibacillus 2497 genus 2 0 6 1 175304 species 1 0 Lentibacillus amyloliquefaciens 2491 1472767 7875 1 1386 Bacillus 233146 genus 0 58 0 1 species 678 Bacillus gibsonii 79881 1547283 species 1 0 Bacillus weihaiensis 6779 1413 0 1 species 2572 Bacillus cellulosilyticus 2947 Bacillus aryabhattai 0 1 species 412384 135735 Bacillus endophyticus 8003 species 1 0 102133 10 0 species group 86661 155322 species 0 1 Bacillus toyonensis 3073 0 1 species 29583 Bacillus thuringiensis 1428 11181 no rank 3 0 2750818 1839798 Bacillus sp. FDAARGOS_235 4459 species 1 0 2053832 species 1 0 Bacillus sp. HBCD-sjtu 2749 1892404 1 0 species 3973 Bacillus sp. ABP14 1 0 species 3194 Bacillus bombysepticus 658666 1405 12166 Bacillus mycoides 0 1 species 1396 34038 Bacillus cereus 0 1 species 1392 0 1 species 3362 Bacillus anthracis 580165 Bacillus cytotoxicus 5536 species 1 0 species 0 1 Bacillus beveridgei 1441 632773 2276 1 0 species group 1792192 0 1 species 2276 Bacillus altitudinis 293387 species 0 1 Bacillus methanolicus 3296 1471 1178537 2097 Bacillus xiamenensis 0 1 species Bacillus flexus 2824 species 0 1 86664 Bacillus cohnii 6624 species 1 0 33932 no rank 19 0 22807 185979 2026248 Bacillus sp. 1s-1 1261 species 0 1 0 1 species 911 Bacillus sp. SDLI1 1774743 2049935 235 Bacillus sp. Lzh-5 0 1 species 1570330 1 0 species 296 Bacillus sp. BH072 1837130 Bacillus sp. FJAT-14266 1556 species 1 0 1827146 species 1 0 Bacillus sp. IHB B 7164 2384 Bacillus sp. Pc3 634 species 0 1 1446792 1261 Bacillus sp. H15-1 0 1 species 1856406 1574141 Bacillus sp. YP1 427 species 0 1 98228 1089 Bacillus sp. OxB-1 1 0 species 1565991 species 0 1 Bacillus sp. X1(2014) 4025 Bacillus sp. WP8 1406 species 1 0 756828 species 0 1 Bacillus sp. JS 881 1127744 2009331 622 Bacillus sp. MD-5 0 1 species 3215 Bacillus sp. 1NLA3E 0 1 species 666686 species 1 0 Bacillus sp. SJ-10 739 563169 1409 315 Bacillus sp. (in: Bacteria) 1 0 species species 0 1 Bacillus sp. 275 647 1941347 species 0 1 Bacillus sp. LM 4-2 903 1628753 561879 species 1 0 Bacillus safensis 4067 4367 Bacillus coagulans 1 0 species 1398 324767 2098 Bacillus infantis 1 0 species 1404 8196 Bacillus megaterium 0 1 species species 0 1 Bacillus smithii 1978 1479 Bacillus horikoshii 2641 species 1 0 79883 1664069 3479 Bacillus glycinifermentans 0 1 species 1408 Bacillus pumilus 8390 species 1 0 species group 0 9 25578 653685 72361 0 1 species 411 Bacillus vallismortis 7076 0 3 species subgroup 1938374 0 1 species 3332 Bacillus velezensis 492670 Bacillus siamensis 757 species 1 0 659243 species 1 0 Bacillus amyloliquefaciens 2987 1390 species 1 0 Bacillus subtilis 9966 1423 1 0 species 1654 Bacillus sonorensis 119858 1648923 Bacillus paralicheniformis 1914 species 1 0 2343 Bacillus licheniformis 1 0 species 1402 1 0 species 2214 Bacillus atrophaeus 1452 1 1329200 48 0 3 genus 5602 Fictibacillus Fictibacillus arsenicus 2646 species 0 1 255247 species 0 1 Fictibacillus phosphorivorans 2908 1221500 13005 9 0 no rank 539002 7 0 no rank 6869 539742 genus 0 7 Exiguobacterium 6869 1017 33986 1 Exiguobacterium sibiricum 768 species 1 0 332410 132920 0 1 species 698 Exiguobacterium antarcticum 4386 no rank 4 0 2644629 1224 Exiguobacterium sp. MH3 1 0 species 1399115 1103 Exiguobacterium sp. U13-1 1 0 species 1849031 1 0 species 1172 Exiguobacterium sp. ZWU0009 1224749 887 Exiguobacterium sp. AT1b 1 0 species 360911 2 0 no rank 6136 539738 1 1378 6 6136 Gemella 0 2 genus 2624949 6130 no rank 0 1 1785995 6130 Gemella sp. oral taxon 928 0 1 species 1 186823 43 11333 Alicyclobacillaceae 9 0 family 432330 1 29 3 0 genus 5273 Tumebacillus 1214604 Tumebacillus algifaecis 2162 species 0 1 3082 Tumebacillus avium 0 1 species 1903704 31 1 29330 Alicyclobacillus 3125 genus 2 0 Alicyclobacillus acidocaldarius 3094 species 0 1 405212 Kyrpidia 2892 genus 3 0 71 1 1129704 2055160 0 1 species 1197 Kyrpidia sp. EA-1 33943 1624 Kyrpidia tusciae 1 0 species 186821 1973 family 0 1 1973 1 0 no rank 663587 0 1 species 1973 [Bacillus] selenitireducens 85683 3107 1 90964 family 0 42 Staphylococcaceae 173103 167 1 2005363 Auricoccucs 4776 genus 2 0 1849491 species 0 1 Auricoccus indicus 4609 2478 1279 1 Staphylococcus 152041 genus 33 0 1 0 species 4586 Staphylococcus saprophyticus 29385 4131 Staphylococcus condimenti 1 0 species 70255 species 1 0 Staphylococcus haemolyticus 5492 1283 1286 0 1 species 3149 Staphylococcus simulans 28035 species 0 1 Staphylococcus lugdunensis 3223 29382 species 1 0 Staphylococcus cohnii 3995 643214 species 0 1 Staphylococcus stepanovicii 4513 4417 Staphylococcus argenteus 1 0 species 985002 985762 2117 Staphylococcus agnetis 1 0 species species 0 1 Staphylococcus hominis 6044 1290 0 1 species 2203 Staphylococcus piscifermentans 70258 246432 0 1 species 4425 Staphylococcus equorum 1 0 species 4403 Staphylococcus nepalensis 214473 1281 species 1 0 Staphylococcus carnosus 3679 29384 4664 Staphylococcus kloosii 0 1 species 91994 3292 no rank 0 1 1715860 Staphylococcus sp. AntiMn-1 3292 species 1 0 1 0 species 1270 Staphylococcus pettenkoferi 170573 1284 1 0 species 3470 Staphylococcus hyicus 308354 1 0 species 4832 Staphylococcus simiae 46127 Staphylococcus felis 2256 species 0 1 species 0 1 Staphylococcus pseudintermedius 3828 283734 species 1 0 Staphylococcus pasteuri 10074 45972 4367 Staphylococcus schleiferi 0 1 species 1295 1288 5319 Staphylococcus xylosus 0 1 species 1292 species 0 1 Staphylococcus warneri 5722 0 1 species 19504 Staphylococcus aureus 1280 155085 Staphylococcus lutrae 2679 species 0 1 0 1 species 4398 Staphylococcus capitis 29388 species 0 1 Staphylococcus muscae 2005 1294 1296 6398 Staphylococcus sciuri 1 0 species 61015 species 1 0 Staphylococcus succinus 3440 1282 species 1 0 Staphylococcus epidermidis 5668 2 0 genus 1422 Salinicoccus 1 45669 9 407035 species 1 0 Salinicoccus halodurans 1413 Macrococcus 11757 genus 4 0 33 1 69965 no rank 0 1 3587 2619255 1898474 species 1 0 Macrococcus sp. IME1552 3587 4064 Macrococcus canis 1 0 species 1855823 Macrococcus caseolyticus 4073 species 1 0 69966 1 186818 111 27 0 family 50012 Planococcaceae genus 2 0 Rummeliibacillus 3533 4 1 648802 3529 Rummeliibacillus stabekisii 1 0 species 241244 1 1649 5 2 0 genus 3819 Kurthia no rank 1 0 3814 2644826 1750719 1 0 species 3814 Kurthia sp. 11kri321 0 3 genus 8589 Solibacillus 1 648800 10 Solibacillus silvestris 3680 species 0 1 76853 2637870 4899 0 1 no rank 1 0 species 4899 Solibacillus sp. R5-41 2048654 0 5 genus 11143 Sporosarcina 1 1569 49 2890 no rank 0 2 2647733 1930546 0 1 species 1540 Sporosarcina sp. P37 species 0 1 Sporosarcina sp. P33 1350 1930764 2993 Sporosarcina psychrophila 0 1 species 1476 species 0 1 Sporosarcina ureae 5211 1571 515 1 1372 genus 0 12 Planococcus 20116 1215089 species 1 0 Planococcus halocryophilus 2153 species 1 0 Planococcus kocurii 1926 1374 species 0 1 Planococcus donghaensis 1885 414778 2662419 2783 0 2 no rank Planococcus sp. PAMC 21323 1574 species 0 1 1526927 2058136 1 0 species 1209 Planococcus sp. MB-3u-03 1302659 species 1 0 Planococcus sp. L10.15 1897 1324 Planococcus rifietoensis 1 0 species 200991 192421 Planococcus maritimus 2366 species 0 1 Planococcus faecalis 2981 species 0 1 1598147 161360 Planococcus antarcticus 1256 species 1 0 1038856 Planococcus plakortidis 1030 species 0 1 5 157226 1 genus 0 2 Jeotgalibacillus 2701 0 1 species 2696 Jeotgalibacillus malaysiensis 1508404 8520 1 186826 order 166 0 Lactobacillales 658905 2540 no rank 1 0 263855 Lactobacillales bacterium 2540 species 1 0 1993866 1 81852 128 106432 Enterococcaceae 0 20 family 33969 1 9 0 2 genus 4769 Melissococcus 33970 species 0 1 Melissococcus plutonius 4760 genus 0 12 Enterococcus 87793 3932 1350 1 37734 species 0 1 Enterococcus casseliflavus 1082 no rank 3 0 5438 2608891 2060306 0 1 species 1636 Enterococcus sp. FDAARGOS_163 2057791 1480 Enterococcus sp. CR-Ec1 0 1 species 2322 Enterococcus sp. FDAARGOS_375 1 0 species 2060307 42269 Enterococcus faecium 0 1 species 1352 53345 0 1 species 3349 Enterococcus durans Enterococcus mundtii 4082 species 1 0 53346 0 1 species 5203 Enterococcus hirae 1354 species 1 0 Enterococcus thailandicus 4064 417368 1351 Enterococcus faecalis 14589 species 0 1 2005703 species 0 1 Enterococcus wangshanyuanii 3785 57 2737 1 genus 3 0 Vagococcus 8337 1 0 species 5739 Vagococcus teuberi 519472 633807 species 1 0 Vagococcus penaei 2541 Tetragenococcus 5405 genus 0 2 10 51668 1 51669 species 1 0 Tetragenococcus halophilus 5395 1 186827 12 10994 Aerococcaceae 8 0 family Aerococcus 10982 genus 0 7 167 1 1375 87541 Aerococcus christensenii 2564 species 1 0 species 1 0 Aerococcus urinae 2116 1376 species 1 0 Aerococcus urinaeequi 2103 51665 species 1 0 Aerococcus sanguinicola 1084 119206 species 1 0 Aerococcus urinaehominis 1478 128944 species 1 0 Aerococcus viridans 1470 1377 689 1 33958 Lactobacillaceae 141863 family 58 0 2742598 7472 genus 0 3 1690 Lactobacillus mucosae 1 0 species 97478 1613 species 0 1 Lactobacillus fermentum 1200 1598 Lactobacillus reuteri 4582 species 1 0 2767893 4356 genus 0 3 1403 Lactobacillus buchneri 1 0 species 1581 152331 species 0 1 Lactobacillus parabuchneri 658 1 0 species 2295 Lactobacillus curieae 1138822 genus 6 0 16776 2767879 1847728 1 0 species 3347 Lactobacillus allii 1602 0 1 species 2815 Lactobacillus alimentarius 1612 Lactobacillus farciminis 3470 species 1 0 2097 Lactobacillus ginsenosidimutans 1 0 species 1007676 Lactobacillus heilongjiangensis 2212 species 0 1 1074467 species 0 1 Lactobacillus crustorum 2835 392416 1 1253 19 9737 Pediococcus 6 0 genus 1 0 species 1371 Pediococcus inopinatus 114090 1 0 species 1347 Pediococcus damnosus 51663 Pediococcus pentosaceus 3093 species 1 0 1255 187452 species 1 0 Pediococcus claussenii 2515 1392 0 1 species group 1670797 1254 1392 Pediococcus acidilactici 0 1 species 2767876 6580 genus 1 0 species 1 0 Lactobacillus amylophilus 6580 1603 genus 0 4 18607 2767887 89059 species 0 1 Lactobacillus acidipiscis 2508 1623 2828 Lactobacillus ruminis 0 1 species 1601 0 1 species 2234 Lactobacillus agilis Lactobacillus salivarius 11037 species 1 0 1624 genus 2 0 2373 2767889 Lactobacillus backii 1104 species 0 1 375175 1269 Lactobacillus coryniformis 1 0 species 1610 2767892 1085 genus 1 0 Lactobacillus paracollinoides 1085 species 0 1 240427 2767886 3 0 genus 2910 267363 Lactobacillus zymae 664 species 0 1 1580 species 1 0 Lactobacillus brevis 1701 species 1 0 Lactobacillus koreensis 545 637971 4607 2 0 genus 2767885 Lactobacillus sakei 2086 species 1 0 1599 species 0 1 Lactobacillus curvatus 2521 28038 1578 1 3993 16 0 genus 48586 Lactobacillus 1596 Lactobacillus gasseri 4130 species 0 1 33959 1 0 species 7575 Lactobacillus johnsonii 1584 1 0 species 4388 Lactobacillus delbrueckii 3432 no rank 0 4 2620435 2108362 864 Lactobacillus sp. D1501 0 1 species 2099789 species 0 1 Lactobacillus sp. CBA3606 726 875 Lactobacillus sp. CBA3605 1 0 species 2099788 species 0 1 Lactobacillus sp. wkB8 967 1545702 1363 Lactobacillus amylolyticus 1 0 species 83683 3363 Lactobacillus gallinarum 1 0 species 52242 267818 species 0 1 Lactobacillus kefiranofaciens 1351 3569 Lactobacillus helveticus 1 0 species 1587 1 0 species 7864 Lactobacillus amylovorus 1604 109790 1 0 species 3581 Lactobacillus jensenii 1579 Lactobacillus acidophilus 2368 species 1 0 1600 Lactobacillus acetotolerans 1609 species 1 0 6058 genus 3 0 2759736 0 1 species 1619 Lactobacillus rhamnosus 47715 0 1 species 2289 Lactobacillus casei 1582 Lactobacillus paracasei 2150 species 1 0 1597 1665 genus 0 1 2767890 1193095 species 1 0 Lactobacillus hokkaidonensis 1665 2767842 genus 3 0 4486 1589 species 0 1 Lactobacillus pentosus 817 1590 2855 Lactobacillus plantarum 0 1 species 60520 1 0 species 814 Lactobacillus paraplantarum 2767881 2 0 genus 3370 Lactobacillus sanfranciscensis 1996 species 0 1 1625 0 1 species 1374 Lactobacillus lindneri 53444 2506 1 0 genus 2767877 2506 Lactobacillus kunkeei 0 1 species 148814 family 18 0 Leuconostocaceae 23448 83 1 81850 1 46254 3 0 2 genus 1551 Oenococcus 0 1 species 1548 Oenococcus oeni 1247 118 46255 1 genus 6 0 Weissella 7457 1 0 species 748 Weissella ceti 759620 137591 889 Weissella cibaria 1 0 species 1631871 0 1 species 1214 Weissella jogaejeotgali species 0 1 Weissella koreensis 2431 165096 species 1 0 Weissella paramesenteroides 2057 1249 14357 Leuconostoc 9 0 genus 1 1243 178 33964 0 1 species 2485 Leuconostoc citreum 1246 Leuconostoc lactis 1409 species 1 0 0 1 species 2504 Leuconostoc gelidum 1244 Leuconostoc garlicum 1344 species 0 1 255248 1252 species 0 1 Leuconostoc carnosum 1034 2045 Leuconostoc kimchii 0 1 species 136609 2685106 1 0 no rank 1022 979982 0 1 species 1022 Leuconostoc sp. C2 species 0 1 Leuconostoc mesenteroides 2336 1245 0 11 family 25525 Carnobacteriaceae 1 186828 93 2 0 genus 5136 Marinilactibacillus 1 191769 15 5121 1 0 no rank 2632303 1 0 species 5121 Marinilactibacillus sp. 15R 1911586 1 2747 174 5 0 genus 15378 Carnobacterium 5055 Carnobacterium maltaromaticum 1 0 species 2751 Carnobacterium inhibens 4043 species 0 1 147709 257487 6106 no rank 0 2 3292 Carnobacterium sp. 17-4 0 1 species 208596 Carnobacterium sp. CP1 2814 species 0 1 1564681 0 3 genus 4918 Jeotgalibaca 1 1470540 15 2621505 no rank 1 0 2268 Jeotgalibaca sp. PTS2502 2268 species 0 1 1903686 708126 0 1 species 2635 Jeotgalibaca dankookensis 7750 1 1300 Streptococcaceae 339583 family 49 0 307301 Streptococcus 43 0 genus 1301 1 6264 1314 0 1 species 6242 Streptococcus pyogenes 1307 Streptococcus suis 73028 species 1 0 315405 3199 Streptococcus gallolyticus 0 1 species species 1 0 Streptococcus iniae 3534 1346 3535 Streptococcus oralis 0 1 species 1303 1349 Streptococcus uberis 1504 species 1 0 Streptococcus infantarius 5654 species 1 0 102684 1302 species 0 1 Streptococcus gordonii 3415 1305 Streptococcus sanguinis 1678 species 1 0 150055 species 0 1 Streptococcus lutetiensis 5336 1240 Streptococcus merionis 1 0 species 400065 Streptococcus pantholopis 1513 species 0 1 1811193 28037 4297 Streptococcus mitis 1 0 species 1814128 1182 Streptococcus halotolerans 1 0 species 1348 Streptococcus parauberis 3166 species 1 0 1326 0 1 species 3641 Streptococcus acidominimus 671232 59943 species group 0 3 43569 Streptococcus anginosus 0 1 species 1328 76860 12749 Streptococcus constellatus 0 1 species 1338 1 0 species 3625 Streptococcus intermedius 45634 1 0 species 1477 Streptococcus cristatus 5651 2 0 species group 119603 1336 Streptococcus equi 3557 species 1 0 1334 species 0 1 Streptococcus dysgalactiae 2094 species 1 0 Streptococcus mutans 2686 1309 1304 1 0 species 11177 Streptococcus salivarius 2608887 no rank 0 7 13793 1838 Streptococcus sp. oral taxon 431 1 0 species 712633 1839799 2869 Streptococcus sp. FDAARGOS_192 0 1 species 1156431 Streptococcus sp. I-G2 2302 species 0 1 Streptococcus sp. NPS 308 1153 species 1 0 1902136 1759399 1635 Streptococcus sp. A12 1 0 species 1156433 species 1 0 Streptococcus sp. I-P16 2417 1319 Streptococcus sp. 'group B' 1579 species 1 0 197614 Streptococcus pasteurianus 6012 species 0 1 1416 Streptococcus himalayensis 1 0 species 1888195 257758 Streptococcus pseudopneumoniae 1459 species 0 1 0 1 species 1731 Streptococcus marmotae 1825069 1311 species 0 1 Streptococcus agalactiae 54435 1335 2110 Streptococcus equinus 0 1 species 82348 Streptococcus pluranimalium 1433 species 0 1 species 0 1 Streptococcus macedonicus 1897 59310 1313 4163 Streptococcus pneumoniae 0 1 species 1318 4790 Streptococcus parasanguinis 0 1 species 4700 Streptococcus thermophilus 0 1 species 1308 Lactococcus 24532 genus 0 5 171 1 1357 1 0 species 17066 Lactococcus lactis 1358 2916 Lactococcus garvieae 0 1 species 1363 Lactococcus raffinolactis 1167 species 0 1 1366 species 0 1 Lactococcus piscium 3212 1364 1 0 no rank 5134 84086 species 0 1 endosymbiont 'TC1' of Trimyema compressum 5134 243899 0 11 class 67281 Erysipelotrichia 1 526524 12 67269 Erysipelotrichales 0 10 order 1 526525 36 307 1 128827 family 0 9 Erysipelotrichaceae 67233 1729679 1 33 17047 Faecalibaculum 0 2 genus 1702221 1 0 species 17014 Faecalibaculum rodentium 544447 26371 no rank 0 1 0 1 species 26371 Erysipelotrichaceae bacterium I46 1834207 1 1647 79 3 0 genus 10659 Erysipelothrix 1648 1 0 species 6655 Erysipelothrix rhusiopathiae 1 0 species 3925 Erysipelothrix larvae 1514105 1 191303 62 2 0 genus 12849 Turicibacter 2638206 12787 0 1 no rank 1712675 species 0 1 Turicibacter sp. H121 12787 class 19 0 Tissierellia 80345 16 1 1737404 0 2 no rank 4579 1737407 248 1 1582879 genus 0 2 Ezakiella 4579 0 1 species 4331 Ezakiella massiliensis 1852374 1 1737405 1261 16 0 order 75750 Tissierellales 3 0 family 19195 Gottschalkiaceae 1 2042895 30 26 1 1505664 Gottschalkia 19165 genus 0 2 19139 Gottschalkia acidurici 1 0 species 1556 1 1570339 5628 55294 Peptoniphilaceae 0 12 family 1 1161127 11 0 2 genus 9240 Murdochiella 1852373 9229 Murdochiella vaginalis 0 1 species 5115 Peptoniphilus 0 2 genus 1 162289 8 2637196 no rank 0 1 5107 1912856 5107 Peptoniphilus sp. ING2-D1G 1 0 species genus 0 2 Finegoldia 11317 12 150022 1 Finegoldia magna 11305 species 0 1 1260 0 3 genus 12034 Anaerococcus 1 165779 4 33034 species 1 0 Anaerococcus prevotii 6849 1870984 5181 Anaerococcus mediterraneensis 0 1 species 24 543311 1 genus 2 0 Parvimonas 11960 species 1 0 Parvimonas micra 11936 33033 6105526 Clostridia 0 226 class 186801 1 593 1 186802 26340 5944236 Clostridiales 167 0 order 3162 186803 1 family 27 0 Lachnospiraceae 1987357 Lachnoclostridium 148576 genus 4 0 765 1 1506553 1 0 species 87839 Lachnoclostridium phocaeense 1871021 2608895 0 1 no rank 41983 1834196 1 0 species 41983 Lachnoclostridium sp. YL32 species 1 0 Lachnoclostridium phytofermentans 17989 66219 1 2039240 27 9481 Anaerotignum 2 0 genus 28446 species 1 0 Anaerotignum propionicum 9454 199483 genus 1 0 2569097 199483 [Eubacterium] hallii 0 1 species 39488 genus 1 0 41474 2719231 84030 [Clostridium] saccharolyticum 41474 species 0 1 Herbinix 12802 genus 0 2 13 1663717 1 1679721 species 0 1 Herbinix luporum 12789 157 1 572511 Blautia 208467 genus 3 0 0 1 species 162762 Blautia hansenii 1322 no rank 0 1 45548 2648079 1796616 45548 Blautia sp. YL58 0 1 species 41 841 1 Roseburia 343576 genus 0 2 301301 343535 Roseburia hominis 0 1 species 28050 167822 0 1 genus [Eubacterium] eligens 167822 species 1 0 39485 78 1 830 genus 0 3 Butyrivibrio 43385 Butyrivibrio proteoclasticus 22409 species 0 1 43305 0 1 species 20898 Butyrivibrio hungatei 185008 2719313 genus 0 1 121780 208479 121780 [Clostridium] bolteae 0 1 species no rank 0 2 472248 186928 39491 species 0 1 [Eubacterium] rectale 435802 712991 1 0 species 36446 Lachnospiraceae bacterium oral taxon 500 Anaerostipes 194326 genus 2 0 366 1 207244 193960 Anaerostipes hadrus 1 0 species 649756 23 1 698776 Cellulosilyticum 20775 genus 0 2 29360 1 0 species 20752 Cellulosilyticum lentocellum 260381 no rank 10 0 538999 33 1 543314 family 4 0 Clostridiales Family XIII. Incertae Sedis 18052 19 1 86331 genus 0 2 Mogibacterium 7854 1 0 species 7835 Mogibacterium diversum 114527 143393 [Eubacterium] sulci 10165 species 1 0 genus 0 2 Intestinimonas 90586 884 1 1392389 1297617 0 1 species 89702 Intestinimonas butyriciproducens 7 1 539000 Clostridiales Family XVII. Incertae Sedis 2220 family 0 3 23 1 73918 Thermaerobacter 2213 genus 0 2 73919 2190 Thermaerobacter marianensis 1 0 species 0 1 genus 149523 2717089 0 1 species 149523 Mordavella sp. Marseille-P3756 2086584 family 0 12 138003 2304686 8 1 1637257 Mageeibacillus 5839 genus 0 2 884684 0 1 species 5831 Mageeibacillus indolicus 18 1 236752 Fastidiosipila 10393 genus 2 0 236753 Fastidiosipila sanguinis 10375 species 0 1 39492 0 3 genus 2304692 1677857 0 1 species 11242 Herbivorax saccincola species 1 0 Ruminiclostridium thermocellum 12179 1515 species 0 1 [Clostridium] clariflavum 16071 288965 2305130 49410 no rank 0 1 1834198 49410 Ruminiclostridium sp. KB18 0 1 species 1 1508657 1236 0 2 genus 14038 Ruminiclostridium 1521 [Clostridium] cellulolyticum 12802 species 1 0 2304693 genus 1 0 11625 species 0 1 [Clostridium] thermosuccinogenes 11625 84032 genus 0 1 7206 2304691 7206 [Clostridium] stercorarium 1 0 species 1510 0 5 family 2976 Syntrophomonadaceae 1 68298 1 3 1 862 Syntrophomonas 2091 genus 0 2 863 Syntrophomonas wolfei 2088 species 1 0 genus 2 0 Syntrophothermus 884 1 129001 1 86170 883 Syntrophothermus lipocalidus 1 0 species 14 1 31984 Heliobacteriaceae 3925 family 3 0 genus 2 0 Heliobacterium 3911 156 1 2697 species 1 0 Heliobacterium modesticaldum 3755 35701 839125 Clostridiaceae 41 0 family 1 31979 1145 23735 Candidatus Arthromitus 0 4 genus 1 49082 239 2638829 0 3 no rank 23496 1508644 0 1 species 7743 Candidatus Arthromitus sp. SFB-mouse-NL 1041504 7979 Candidatus Arthromitus sp. SFB-rat-Yit 0 1 species Candidatus Arthromitus sp. SFB-mouse 7774 species 1 0 49118 genus 30 0 Clostridium 789076 3698 1 1485 394958 Clostridium taeniosporum 24240 species 0 1 1488 17869 Clostridium acetobutylicum 0 1 species 1520 35777 Clostridium beijerinckii 1 0 species 12626 Clostridium autoethanogenum 1 0 species 84023 Clostridium cochlearium 24308 species 1 0 1494 1 0 species 27573 Clostridium butyricum 1492 species 0 1 Clostridium baratii 39645 1561 1493 16735 Clostridium cellulovorans 1 0 species Clostridium estertheticum 19807 species 0 1 238834 Clostridium ljungdahlii 13808 species 1 0 1538 1509 species 1 0 Clostridium sporogenes 21056 species 1 0 Clostridium bornimense 26669 1216932 0 2 no rank 44236 2614128 1042156 30545 Clostridium sp. SY8519 0 1 species 755731 13691 Clostridium sp. BNL1100 1 0 species 24939 Clostridium saccharobutylicum 0 1 species 169679 1519 15167 Clostridium tyrobutyricum 1 0 species 84022 species 0 1 Clostridium aceticum 7410 217159 0 1 species 23069 Clostridium carboxidivorans 0 1 species 30339 Clostridium pasteurianum 1501 1534 species 1 0 Clostridium kluyveri 19966 0 1 species 21801 Clostridium novyi 1542 46867 species 1 0 Clostridium chauvoei 24123 36745 29731 Clostridium saccharoperbutylacetonicum 0 1 species 1502 39294 Clostridium perfringens 1 0 species species 0 1 Clostridium tetani 25875 1513 29341 species 1 0 Clostridium argentinense 30989 1497 1 0 species 6872 Clostridium formicaceticum Clostridium botulinum 134514 species 1 0 1491 species 1 0 Clostridium scatologenes 26940 1548 1 390805 37 10291 Geosporobacter 0 2 genus species 0 1 Geosporobacter ferrireducens 10254 1424294 1981033 genus 1 0 Mordavella 262 114627 1 24 14616 Alkaliphilus 0 3 genus 0 1 species 6699 Alkaliphilus oremlandii 461876 species 0 1 Alkaliphilus metalliredigens 7893 208226 5 0 family 33420 Eubacteriaceae 1 186806 107 0 2 genus 27420 Eubacterium 1 1730 1351 1736 Eubacterium limosum 26069 species 1 0 1 33951 9 5893 Acetobacterium 0 2 genus Acetobacterium woodii 5884 species 1 0 33952 family 13 0 Ruminococcaceae 2281133 1150 1 541000 552397 no rank 1 0 14343 species 0 1 [Clostridium] cellulosi 14343 29343 203 1 946234 Flavonifractor 63286 genus 2 0 species 1 0 Flavonifractor plautii 63083 292800 1 1263 336 0 3 genus 422083 Ruminococcus 1 0 species 397090 Ruminococcus bicirculans 1160721 1264 species 1 0 Ruminococcus albus 24657 22750 Ethanoligenens 2 0 genus 1 253238 35 Ethanoligenens harbinense 22715 species 0 1 253239 1 0 no rank 25391 2305133 25391 Ruminococcaceae bacterium CPB6 1 0 species 1572656 1890281 6 Herbivorax 0 1 genus Faecalibacterium 1732124 genus 0 2 1479 1 216851 Faecalibacterium prausnitzii 1730645 species 0 1 853 61583 Peptococcaceae 29 0 family 1 186807 270 genus 2 0 Thermincola 2276 28 278993 1 2248 Thermincola potens 1 0 species 863643 Dehalobacterium 6864 genus 2 0 238 51514 1 51515 Dehalobacterium formicoaceticum 6626 species 0 1 1 36853 216 5 0 genus 11530 Desulfitobacterium species 1 0 Desulfitobacterium dichloroeliminans 2151 233055 142877 1 0 species 2528 Desulfitobacterium metallireducens 36854 2757 Desulfitobacterium dehalogenans 1 0 species 3878 Desulfitobacterium hafniense 1 0 species 49338 316 1 79206 genus 4 0 Desulfosporosinus 7845 Desulfosporosinus meridiei 2346 species 0 1 79209 2709 Desulfosporosinus orientis 0 1 species 1563 Desulfosporosinus acidiphilus 2474 species 0 1 885581 2 0 genus 1474 Candidatus Desulforudis 1 471826 12 0 1 species 1462 Candidatus Desulforudis audaxviator 471827 2 0 genus 3940 Syntrophobotulus 1 51196 3 species 1 0 Syntrophobotulus glycolicus 3937 51197 1 1562 178 12759 Desulfotomaculum 5 0 genus 1564 species 1 0 Desulfotomaculum ruminis 3353 1833852 3295 Desulfotomaculum ferrireducens 1 0 species 1565 species 1 0 Desulfotomaculum nigrificans 2278 59610 1 0 species 3655 Desulfotomaculum reducens 1 56112 86 8051 Dehalobacter 0 4 genus 55583 2543 Dehalobacter restrictus 0 1 species no rank 2 0 5422 2635733 species 1 0 Dehalobacter sp. CF 2927 1131462 2495 Dehalobacter sp. DCA 0 1 species 1147129 2282740 2994 1 0 genus 102134 species 1 0 Desulfotomaculum gibsoniae 2994 2282742 0 1 genus 3580 58138 3580 Desulfotomaculum acetoxidans 0 1 species 1 216572 11 32865 Oscillospiraceae 0 3 family 133 1 459786 Oscillibacter 32854 genus 2 0 351091 Oscillibacter valericigenes 32721 species 0 1 1 186804 1267 0 12 family 237213 Peptostreptococcaceae 534 1 1870884 genus 2 0 Clostridioides 184139 0 1 species 183605 Clostridioides difficile 1496 Paeniclostridium 28105 genus 2 0 6 1 1849828 1505 species 0 1 Paeniclostridium sordellii 28099 1 186831 15 6587 Acetoanaerobium 0 2 genus 1511 0 1 species 6572 Acetoanaerobium sticklandii Peptoclostridium 4684 genus 0 2 6 1481960 1 1731 0 1 species 4678 Peptoclostridium acidaminophilum 1 0 no rank 5559 1411023 2081703 species 1 0 Peptostreptococcaceae bacterium oral taxon 929 5559 1 44259 17 2 0 genus 6872 Filifactor 1 0 species 6855 Filifactor alocis 143361 family 3 0 Christensenellaceae 36077 93 1 990719 1 990721 759 0 2 genus 35984 Christensenella 1805714 0 1 species 35225 Christensenella massiliensis 18 1 543349 Symbiobacteriaceae 3838 family 0 3 1 2733 15 3820 Symbiobacterium 2 0 genus 2734 species 0 1 Symbiobacterium thermophilum 3805 2770089 3 0 order 5432 1 0 family 4356 2770092 499228 0 1 genus 4356 499229 species 1 0 Tepidanaerobacter acetatoxydans 4356 2770093 1076 family 0 2 4 291988 1 genus 2 0 Thermosediminibacter 1076 species 0 1 Thermosediminibacter oceani 1072 291990 485256 1 15 4 0 order 2752 Natranaerobiales 4 1 485255 Natranaerobiaceae 2737 family 3 0 118 375928 1 genus 2 0 Natranaerobius 2733 species 0 1 Natranaerobius thermophilus 2615 375929 1 53433 32 25982 Halanaerobiales 0 12 order 86 1 972 family 0 6 Halanaerobiaceae 15593 genus 0 2 Halothermothrix 1786 4 1 32636 31909 species 1 0 Halothermothrix orenii 1782 Halanaerobium 13721 genus 0 3 241 2330 1 6043 Halanaerobium hydrogeniformans 0 1 species 656519 Halanaerobium praevalens 7437 species 1 0 2331 10357 Halobacteroidaceae 0 5 family 1 53434 9 genus 2 0 Acetohalobium 4775 1 1 28186 0 1 species 4774 Acetohalobium arabaticum 28187 5573 Halobacteroides 2 0 genus 1 42417 23 42422 0 1 species 5550 Halobacteroides halobius 99 1 68295 order 39 0 Thermoanaerobacterales 126531 family 19 0 Thermoanaerobacteraceae 64138 91 1 186814 51330 Thermoanaerobacter 9 0 genus 1 1754 2027 46354 1 0 species 6955 Thermoanaerobacter wiegelii 108150 species 0 1 Thermoanaerobacter italicus 7208 2325 5247 Thermoanaerobacter kivui 1 0 species 2 0 no rank 11377 2636821 0 1 species 5932 Thermoanaerobacter sp. X514 399726 573062 0 1 species 5445 Thermoanaerobacter sp. X513 583357 0 1 species 7051 Thermoanaerobacter mathranii Thermoanaerobacter pseudethanolicus 5734 species 1 0 496866 species 1 0 Thermoanaerobacter brockii 5731 29323 1 140458 235 1825 Thermacetogenium 2 0 genus 0 1 species 1590 Thermacetogenium phaeum 85874 129957 1828 0 1 genus Carboxydothermus hydrogenoformans 1828 species 1 0 129958 genus 2 0 Caldanaerobacter 5755 2 249529 1 species 1 0 Caldanaerobacter subterraneus 5753 911092 0 4 no rank 3309 42857 12 1 42837 Ammonifex 1221 genus 2 0 1 0 species 1209 Ammonifex degensii 42838 5 1 44260 Moorella 2088 genus 0 2 1525 species 0 1 Moorella thermoacetica 2083 family 13 0 Thermoanaerobacterales Family III. Incertae Sedis 56192 98 1 543371 1 28895 30 3 0 genus 16274 Thermoanaerobacterium 1517 Thermoanaerobacterium thermosaccharolyticum 10588 species 0 1 Thermoanaerobacterium xylanolyticum 5656 species 1 0 29329 828 1 44000 Caldicellulosiruptor 39820 genus 0 9 31899 Caldicellulosiruptor bescii 5407 species 1 0 species 1 0 Caldicellulosiruptor hydrothermalis 5342 413888 1 0 species 5007 Caldicellulosiruptor kristjanssonii 52765 55205 4490 Caldicellulosiruptor owensensis 0 1 species 44001 species 1 0 Caldicellulosiruptor saccharolyticus 4781 species 1 0 Caldicellulosiruptor obsidiansis 4180 717609 52766 Caldicellulosiruptor lactoaceticus 4799 species 0 1 species 1 0 Caldicellulosiruptor kronotskyensis 4986 413889 1 227387 4 3 0 family 3024 Thermodesulfobiaceae genus 0 2 Thermodesulfobium 3020 1 1 227388 184064 Thermodesulfobium narugense 3019 species 0 1 1 543372 18 3 0 family 3078 Thermoanaerobacterales Family IV. Incertae Sedis 3 252965 1 genus 2 0 Mahella 3060 species 1 0 Mahella australiensis 3057 252966 no rank 2 0 3325 33974 1930845 1 24 3325 Ndongobacter 2 0 genus 1871025 species 1 0 Ndongobacter massiliensis 3301 Negativicutes 107782 class 0 31 126 1 909932 Acidaminococcales 20794 order 5 0 97 1 1843488 0 4 family 20697 Acidaminococcaceae 1 909930 75 genus 0 3 Acidaminococcus 20622 130 1 904 187327 Acidaminococcus intestini 13761 species 1 0 905 6731 Acidaminococcus fermentans 1 0 species 103 1 909929 Selenomonadales 46257 order 14 0 Selenomonadaceae 35282 family 0 9 331 1843491 1 2 0 genus 8323 Megamonas 1 158846 3 Megamonas hypermegale 8320 species 0 1 158847 26628 Selenomonas 0 6 genus 1 970 368 1 0 species 5597 Selenomonas sputigena 69823 971 species 0 1 Selenomonas ruminantium 8476 2637378 12187 no rank 0 3 Selenomonas sp. oral taxon 478 4278 species 0 1 712538 1 0 species 4120 Selenomonas sp. oral taxon 136 713030 1884263 species 0 1 Selenomonas sp. oral taxon 920 3789 1843490 1 11 4 0 family 10872 Sporomusaceae 1 365348 52 3 0 genus 10861 Pelosinus 2629460 1 0 no rank 5796 484770 5796 Pelosinus sp. UFO1 1 0 species 1 0 species 5013 Pelosinus fermentans 365349 1 1843489 2859 11 0 order 40605 Veillonellales family 0 10 Veillonellaceae 37746 2277 1 31977 1 909928 19 2 0 genus 3243 Negativicoccus species 1 0 Negativicoccus massiliensis 3224 1702287 579 1 906 genus 2 0 Megasphaera 11879 907 species 1 0 Megasphaera elsdenii 11300 146 1 29465 genus 3 0 Veillonella 9066 5273 Veillonella parvula 0 1 species 29466 248315 1 0 species 3647 Veillonella rodentium 63 39948 1 Dialister 11281 genus 0 2 39950 Dialister pneumosintes 11218 species 1 0 Limnochordia 1733 class 0 5 8 1 1676648 1725 Limnochordales 4 0 order 1676649 1 26 Limnochordaceae 1699 family 0 3 27 1 1676650 Limnochorda 1672 genus 0 2 31 1 1676651 1555112 Limnochorda pilosa 1641 species 1 0 1859062 2 0 no rank 420 420 Thermobaculum 2 0 genus 1 262406 60 166501 360 Thermobaculum terrenum 0 1 species Actinobacteria 1762687 phylum 0 661 125 1 201174 7 0 class 1506 Acidimicrobiia 1 84992 6 Acidimicrobiales 1500 order 0 6 30 1 84993 1 84994 12 279 Acidimicrobiaceae 0 3 family genus 2 0 Acidimicrobium 267 2 1 53634 Acidimicrobium ferrooxidans 265 species 1 0 53635 2448023 1191 0 2 family 2 0 genus 1191 Ilumatobacter 1 682522 13 Ilumatobacter coccineus 1178 species 1 0 467094 7979 1 1760 class 605 0 Actinobacteria 1444748 Kineosporiales 1252 order 0 4 6 1 622452 34 1 83778 Kineosporiaceae 1246 family 0 3 8 1 33981 Kineococcus 1212 genus 2 0 1 0 species 1204 Kineococcus radiotolerans 131568 0 149 order 105908 Micrococcales 1 85006 1028 62 1 85017 family 9 0 Promicromonosporaceae 5608 157920 1 22 2072 Cellulosimicrobium 3 0 genus no rank 1 0 978 2624466 1980001 1 0 species 978 Cellulosimicrobium sp. TH-20 1710 species 1 0 Cellulosimicrobium cellulans 1072 53 1 254250 Isoptericola 2264 genus 3 0 372663 Isoptericola dokdonensis 1075 species 0 1 139208 1 0 species 1136 Isoptericola variabilis 1210 Xylanimonas 2 0 genus 1 186188 6 species 1 0 Xylanimonas cellulosilytica 1204 186189 2 0 no rank 79 577468 1 2038 1 79 Tropheryma 2 0 genus 2039 1 0 species 78 Tropheryma whipplei 299 Jonesiaceae 3 0 family 1 85022 1 298 Jonesia 0 2 genus 1 43673 5 Jonesia denitrificans 293 species 1 0 43674 4230 Intrasporangiaceae 0 9 family 85021 1 42 0 2 genus 994 Janibacter 1 53457 12 857417 0 1 species 982 Janibacter indicus 21 1 267408 genus 0 2 Arsenicicoccus 1230 1209 no rank 0 1 2663846 1209 Arsenicicoccus sp. oral taxon 190 1 0 species 1658671 2 0 genus 769 Intrasporangium 1 53357 15 53358 754 Intrasporangium calvum 1 0 species 1195 Serinicoccus 2 0 genus 1 265976 23 1172 Serinicoccus sp. JLT9 1 0 species 1758689 3 1 85018 family 0 3 Dermatophilaceae 457 1 1862 35 0 2 genus 454 Dermatophilus 1 0 species 419 Dermatophilus congolensis 1863 1807 1 1268 family 0 39 Micrococcaceae 45328 12 1 1742989 genus 0 2 Glutamicibacter 1528 256701 1516 Glutamicibacter arilaitensis 1 0 species Rothia 12896 genus 0 3 14 1 32207 43675 Rothia mucilaginosa 12156 species 1 0 2047 1 0 species 726 Rothia dentocariosa Neomicrococcus 2036 genus 2 0 12 1 1868332 556325 Neomicrococcus aestuarii 2024 species 1 0 1742992 835 genus 0 1 Paenarthrobacter aurescens 835 species 0 1 43663 57493 1 52 0 4 genus 2889 Kocuria Kocuria rhizophila 1036 species 1 0 72000 71999 0 1 species 851 Kocuria palustris species 1 0 Kocuria flava 950 446860 Renibacterium 324 genus 2 0 1 1 1645 1646 species 0 1 Renibacterium salmoninarum 323 1 1742993 45 3497 Pseudarthrobacter 4 0 genus 85085 1223 Pseudarthrobacter chlorophenolicus 1 0 species 1 0 species 1140 Pseudarthrobacter sulfonivorans 121292 361575 1089 Pseudarthrobacter phenanthrenivorans 1 0 species 1 1663 342 15 0 genus 16569 Arthrobacter 235627 12 0 no rank 13032 1118963 0 1 species 740 Arthrobacter sp. Rue61a 1494608 Arthrobacter sp. PAMC 25486 1214 species 1 0 1806905 1 0 species 773 Arthrobacter sp. ZXY-2 Arthrobacter sp. YN 980 species 1 0 2020486 1849032 Arthrobacter sp. U41 1177 species 0 1 290399 1223 Arthrobacter sp. FB24 1 0 species 1396 Arthrobacter sp. YC-RL1 0 1 species 1652545 1704044 0 1 species 1179 Arthrobacter sp. ERGS1:01 1357915 species 0 1 Arthrobacter sp. QXT-31 1073 1771959 Arthrobacter sp. ATCC 21022 862 species 0 1 1690248 1500 Arthrobacter sp. LS16 1 0 species Arthrobacter sp. PGP41 915 species 0 1 2079227 species 1 0 Arthrobacter crystallopoietes 1262 37928 656366 1933 Arthrobacter alpinus 0 1 species Micrococcus 1098 genus 0 2 11 1269 1 1270 species 1 0 Micrococcus luteus 1087 815 0 1 genus 2078575 1 0 species 815 Arthrobacter sp. IHBB 11108 1618207 1034 Sinomonas 2 0 genus 1 596707 45 989 Sinomonas atrocyanea 1 0 species 37927 426 1 85023 family 50 0 Microbacteriaceae 30774 Frondihabitans 1041 genus 2 0 2 1 447237 2626248 no rank 0 1 1039 0 1 species 1039 Frondihabitans sp. PAMC 28766 1795630 no rank 0 3 875 1655488 1655489 0 3 clade 875 4 1 529883 Rhodoluna 875 genus 3 0 Candidatus Rhodoluna planktonica 593 species 1 0 535712 278 Rhodoluna lacicola 1 0 species 529884 1 337004 2 2 0 genus 921 Microcella 279828 Microcella alkaliphila 919 species 1 0 6 1 518733 Microterricola 1136 genus 0 2 Microterricola viridarii 1130 species 0 1 412690 16 1 110932 Leifsonia 2067 genus 0 2 species 1 0 Leifsonia xyli 2051 1575 931 Cnuibacter 2 0 genus 1 1759331 1 1619308 Cnuibacter physcomitrellae 930 species 0 1 2034 1 58 0 4 genus 2531 Curtobacterium Curtobacterium pusillum 816 species 0 1 69373 1657 2 0 no rank 257496 1561023 796 Curtobacterium sp. MR_MD2014 1 0 species 1905847 Curtobacterium sp. BH-2-1-1 861 species 1 0 0 14 genus 11334 Microbacterium 33882 1 583 162426 1113 Microbacterium hominis 0 1 species 2033 species 1 0 Microbacterium testaceum 713 36805 1 0 species 830 Microbacterium aurum Microbacterium chocolatum 533 species 0 1 84292 300019 Microbacterium paludicola 790 species 0 1 6772 no rank 0 8 2609290 963 Microbacterium sp. BH-3-3-3 0 1 species 1906742 1714373 Microbacterium sp. No. 7 962 species 1 0 367477 species 0 1 Microbacterium sp. XT11 667 1696072 1 0 species 706 Microbacterium sp. CGR1 1 0 species 681 Microbacterium sp. TPU 3598 1938334 Microbacterium sp. str. 'China' 945 species 1 0 2103230 1795053 1 0 species 1081 Microbacterium sp. PAMC 28756 0 1 species 767 Microbacterium sp. 1.5R 1916917 1 33877 7 1281 Agromyces 0 2 genus 1274 Agromyces aureus 1 0 species 453304 1 1573 168 0 6 genus 3577 Clavibacter 3409 Clavibacter michiganensis 5 0 species 28447 1 666 0 1 subspecies 824 Clavibacter sepedonicus 31964 Clavibacter nebraskensis 663 subspecies 1 0 31963 33014 0 1 subspecies 641 Clavibacter insidiosus 1 0 subspecies 615 Clavibacter capsici 1874630 Cryobacterium 2508 genus 0 3 354 1 69578 Cryobacterium arcticum 1127 species 0 1 670052 2649013 1027 no rank 0 1 Cryobacterium sp. LW097 1027 species 0 1 1978566 627 Pontimonas 0 2 genus 1 1434032 1 0 1 species 626 Pontimonas salivibrio 1159327 294 Aurantimicrobium 0 2 genus 1 1705353 1 708131 293 Aurantimicrobium minutum 0 1 species 14 1 33886 Rathayibacter 1225 genus 0 3 885 Rathayibacter tritici 1 0 species 33888 1 0 species 326 Rathayibacter toxicus 145458 1 125316 2 985 Beutenbergiaceae 3 0 family genus 2 0 Beutenbergia 983 20 1 84756 84757 Beutenbergia cavernae 963 species 0 1 145360 1 5 0 3 family 879 Sanguibacteraceae genus 0 2 Sanguibacter 874 29 60919 1 60920 1 0 species 845 Sanguibacter keddieii 11 1 85019 Brevibacteriaceae 1811 family 0 3 1800 Brevibacterium 2 0 genus 1 1696 15 1703 Brevibacterium linens 1785 species 1 0 Cellulomonadaceae 3969 family 6 0 31 1 85016 95 1 1707 Cellulomonas 3938 genus 5 0 2620175 797 1 0 no rank Cellulomonas sp. PSBB021 797 species 1 0 2003551 1711 Cellulomonas flavigena 888 species 0 1 1708 Cellulomonas fimi 1283 species 1 0 11 1 0 species 875 Cellulomonas gilvus 0 11 family 7702 Dermabacteraceae 1 85020 66 1 1 36739 genus 2 0 Dermabacter 561 1630135 560 Dermabacter vaginalis 1 0 species 6639 Brachybacterium 6 0 genus 1 43668 135 0 1 species 1090 Brachybacterium sp. VR2415 2017485 43669 Brachybacterium faecium 1655 species 0 1 0 1 species 1304 Brachybacterium ginsengisoli 1331682 no rank 0 1 1151 2623841 1903186 Brachybacterium sp. P6-10-X1 1151 species 1 0 species 0 1 Brachybacterium sp. VM2412 1304 2017484 2 0 genus 436 Devriesea 472568 1 1 1 0 species 435 Devriesea agamarum 472569 49 1 145357 Dermacoccaceae 2759 family 7 0 1 745364 10 998 Luteipulveratus 2 0 genus Luteipulveratus mongoliensis 988 species 0 1 571913 genus 0 2 Dermacoccus 824 11 1 57495 1274 0 1 species 813 Dermacoccus nishinomiyaensis Kytococcus 888 genus 0 2 25 1 57499 1 0 species 863 Kytococcus sedentarius 1276 32 1 2039638 Candidatus Nanopelagicales 7184 order 12 0 7152 family 0 11 2162846 22 1 622681 Candidatus Planktophila 3262 genus 0 7 1 0 species 322 Candidatus Planktophila limnetica 573600 1884914 species 1 0 Candidatus Planktophila dulcis 763 1884905 0 1 species 640 Candidatus Planktophila versatilis 1884904 519 Candidatus Planktophila sulfonica 0 1 species 459 Candidatus Planktophila vernalis 1 0 species 1884907 1884913 species 0 1 Candidatus Planktophila lacus 537 1 2039639 21 3890 Candidatus Nanopelagicus 4 0 genus 749 Candidatus Nanopelagicus limnes 0 1 species 1884634 1884916 Candidatus Nanopelagicus abundans 1622 species 0 1 species 0 1 Candidatus Nanopelagicus hibericus 1498 1884915 81 1 85012 order 0 16 Streptosporangiales 13255 Streptosporangiaceae 5822 family 0 5 78 1 2004 Streptosporangium 1978 genus 2 0 17 1 2000 Streptosporangium roseum 1961 species 0 1 2001 Nonomuraea 3766 genus 0 2 22 1 83681 3744 no rank 0 1 2593643 Nonomuraea sp. ATCC 55076 3744 species 0 1 1909395 1 2012 39 2299 Thermomonosporaceae 3 0 family 2260 Thermomonospora 2 0 genus 1 2019 52 Thermomonospora curvata 2208 species 0 1 2020 1 83676 81 5053 Nocardiopsaceae 7 0 family Thermobifida 674 genus 0 2 3 1 83677 671 Thermobifida fusca 0 1 species 2021 4 0 genus 4298 Nocardiopsis 2013 1 110 Nocardiopsis alba 1111 species 1 0 53437 280236 1310 Nocardiopsis gilva 1 0 species 2014 species 0 1 Nocardiopsis dassonvillei 1767 1643818 966 0 2 no rank 5 1 147067 Thermobispora 966 genus 2 0 961 Thermobispora bispora 1 0 species 2006 1 622450 1 851 Actinopolysporales 0 4 order Actinopolysporaceae 850 family 0 3 12 1 622451 1 1849 24 2 0 genus 838 Actinopolyspora 414996 814 Actinopolyspora erythraea 0 1 species 163 0 order 132217 Corynebacteriales 85007 1 1026 454 2 0 no rank 697024 0 2 genus 454 Lawsonella 1 1847725 3 451 Lawsonella clevelandensis 1 0 species 1528099 Segniliparaceae 665 family 0 3 5 1 316606 286801 1 18 660 Segniliparus 0 2 genus 286802 0 1 species 642 Segniliparus rotundus 31022 Nocardiaceae 31 0 family 1 85025 215 genus 0 7 Nocardia 11760 216 1 1817 37329 1 0 species 1886 Nocardia farcinica Nocardia brasiliensis 2681 species 0 1 37326 species 1 0 Nocardia terpenica 1629 455432 37332 Nocardia seriolae 1565 species 0 1 species 0 1 Nocardia nova 1301 37330 135487 Nocardia cyriacigeorgica 2482 species 1 0 Rhodococcus 19047 genus 23 0 898 1 1827 Rhodococcus aetherivorans 1053 species 0 1 191292 species 1 0 Rhodococcus opacus 2261 37919 species 1 0 Rhodococcus erythropolis 725 1833 Rhodococcus hoagii 893 species 1 0 43767 species 0 1 Rhodococcus qingshengii 560 334542 1830 1 0 species 1211 Rhodococcus ruber species 1 0 Rhodococcus jostii 977 132919 Rhodococcus rhodochrous 656 species 0 1 1829 0 1 species 675 Rhodococcus fascians 1828 no rank 0 12 8273 192944 Rhodococcus sp. 008 570 species 1 0 1723645 species 1 0 Rhodococcus sp. 2G 711 1570939 species 1 0 Rhodococcus sp. B7740 761 1564114 1807790 Rhodococcus sp. BH4 480 species 1 0 1805827 Rhodococcus sp. MTM3W5.2 900 species 1 0 species 0 1 Rhodococcus sp. H-CA8f 617 1727214 Rhodococcus sp. WB1 1125 species 1 0 1033922 Rhodococcus sp. YL-1 554 species 1 0 1045808 679318 Rhodococcus sp. WMMA185 568 species 0 1 935199 737 Rhodococcus sp. p52 1 0 species Rhodococcus sp. PBTS 2 570 species 1 0 1653479 0 1 species 680 Rhodococcus sp. PBTS 1 1653478 103816 species 0 1 Rhodococcus pyridinivorans 865 0 57 family 44806 Mycobacteriaceae 1762 1 180 4095 5 0 genus 670516 1935 Mycobacterium abscessus 1 0 species 36809 1578165 species 1 0 Mycobacterium saopaulense 540 1520670 species 1 0 Mycobacterium stephanolepidis 484 1774 405 Mycobacterium chelonae 1 0 species 0 1 species 731 Mycobacterium immunogenum 83262 1073531 1690 0 2 genus 1788 816 Mycobacterium terrae 0 1 species 875328 874 Mycobacterium sinense 1 0 species genus 0 2 Hoyosella 470 2 1 697025 0 1 species 468 Hoyosella subflava 639313 1866885 13 0 genus 12736 758802 865 Mycobacterium litorale 1 0 species Mycobacterium thermoresistibile 974 species 0 1 1797 134601 0 1 species 1156 Mycobacterium goodii 1766 species 1 0 Mycobacterium fortuitum 656 1771 1106 Mycobacterium phlei 1 0 species 1800 891 Mycobacterium chubuense 1 0 species 1772 1204 Mycobacterium smegmatis 1 0 species Mycobacterium vaccae 956 species 1 0 1810 1795 species 0 1 Mycobacterium neoaurum 936 36814 species 0 1 Mycobacterium rhodesiae 878 1804 Mycobacterium gilvum 1067 species 1 0 0 1 species 918 Mycobacterium vanbaalenii 110539 1129 Mycobacterium aurum 1 0 species 1791 25635 Mycobacterium 34 0 genus 1763 1 2135 5104 species group 8 0 120793 339268 species 0 1 Mycobacterium colombiense 1042 1138383 species 0 1 Mycobacterium paraintracellulare 299 1698 Mycobacterium avium 0 1 species 1764 623 Mycobacterium marseillense 0 1 species 701042 species 0 4 Mycobacterium intracellulare 1442 354 1 1767 0 1 subspecies 257 Mycobacterium indicus pranii 35617 222805 subspecies 1 0 Mycobacterium chimaera 584 1203599 subspecies 0 1 Mycobacterium yongonense 247 249 Mycobacterium leprae 1 0 species 1769 0 1 species 1307 Mycobacterium dioxanotrophicus 482462 261524 species 0 1 Mycobacterium liflandii 606 species group 1 0 662 2249310 722731 1 0 species 662 Mycobacterium shigaense 1001 Mycobacterium kansasii 1 0 species 1768 2642494 0 13 no rank 10831 Mycobacterium sp. djl-10 1237 species 0 1 1879023 2051552 Mycobacterium sp. PYR15 1187 species 1 0 0 1 species 527 Mycobacterium sp. QIA-37 1561223 Mycobacterium sp. MCS 715 species 0 1 164756 1 0 species 736 Mycobacterium sp. KMS 189918 0 1 species 424 Mycobacterium sp. MOTT36Y 1168287 Mycobacterium sp. VKM Ac-1817D 588 species 1 0 1273687 1545728 805 Mycobacterium sp. EPa45 0 1 species 936 Mycobacterium sp. NRRL B-3805 1 0 species 1570328 957 Mycobacterium sp. YC-RL4 1 0 species 1682113 1920667 0 1 species 1134 Mycobacterium sp. WY10 212767 species 0 1 Mycobacterium sp. JS623 793 Mycobacterium sp. JLS 792 species 0 1 164757 0 4 species group 1933 77643 species 1 0 Mycobacterium canettii 484 78331 542 1 1773 species 0 3 Mycobacterium tuberculosis 1449 1 0 biotype 452 Mycobacterium africanum 33894 455 Mycobacterium bovis 1 0 biotype 1765 Mycobacterium ulcerans 632 species 1 0 1809 1781 0 1 species 685 Mycobacterium marinum Mycobacterium haemophilum 490 species 1 0 29311 1 85026 36 5546 Gordoniaceae 0 9 family Gordonia 5510 genus 0 8 167 1 2053 Gordonia bronchialis 727 species 0 1 2054 1136941 Gordonia phthalatica 680 species 0 1 2657482 1586 no rank 2 0 1 0 species 780 Gordonia sp. YC-JH1 2059875 337191 806 Gordonia sp. KTR9 0 1 species species 1 0 Gordonia iterans 736 1004901 2055 0 1 species 725 Gordonia terrae 889 Gordonia polyisoprenivorans 1 0 species 84595 332 1 1653 Corynebacteriaceae 44849 family 52 0 Corynebacterium 44517 genus 51 0 1171 1 1716 146827 species 1 0 Corynebacterium simulans 1211 Corynebacterium efficiens 947 species 1 0 152794 161896 0 1 species 1171 Corynebacterium camporealensis Corynebacterium singulare 1146 species 0 1 161899 Corynebacterium doosanense 804 species 1 0 1121358 160386 Corynebacterium casei 532 species 0 1 575200 0 1 species 792 Corynebacterium maris species 0 1 Corynebacterium callunae 1012 1721 917 Corynebacterium lactis 0 1 species 1231000 401472 1 0 species 898 Corynebacterium ureicelerivorans 258224 Corynebacterium resistens 489 species 0 1 1230998 Corynebacterium frankenforstense 1276 species 1 0 0 1 species 980 Corynebacterium variabile 1727 1 0 species 399 Corynebacterium kroppenstedtii 161879 225326 Corynebacterium halotolerans 1178 species 1 0 1 0 species 625 Corynebacterium ammoniagenes 1697 species 0 1 Corynebacterium ulcerans 688 65058 1072256 Corynebacterium uterequi 917 species 1 0 1 0 species 928 Corynebacterium mustelae 571915 43771 species 0 1 Corynebacterium urealyticum 777 349751 1050 Corynebacterium marinum 0 1 species 1223514 1 0 species 908 Corynebacterium humireducens species 0 1 Corynebacterium stationis 761 1705 1 0 species 1388 Corynebacterium vitaeruminis 38305 species 0 1 Corynebacterium diphtheriae 795 1717 89154 0 1 species 543 Corynebacterium terpenotabidum 1408191 species 0 1 Corynebacterium deserti 893 Corynebacterium pseudotuberculosis 443 species 1 0 1719 136857 Corynebacterium testudinoris 671 species 1 0 0 1 species 679 Corynebacterium kutscheri 35755 203263 842 Corynebacterium aquilae 1 0 species 28028 species 1 0 Corynebacterium flavescens 540 1 0 species 481 Corynebacterium crudilactis 1652495 Corynebacterium phocae 748 species 1 0 161895 43770 2004 Corynebacterium striatum 0 1 species Corynebacterium jeikeium 1843 species 0 1 38289 species 0 1 Corynebacterium atypicum 775 191610 Corynebacterium falsenii 1357 species 0 1 108486 1404244 Corynebacterium glyciniphilum 647 species 0 1 913 Corynebacterium aurimucosum 1 0 species 169292 191493 species 0 1 Corynebacterium sphenisci 901 1 0 species 465 [Brevibacterium] flavum 92706 482 Corynebacterium argentoratense 0 1 species 42817 species 0 1 Corynebacterium glaucum 738 187491 156978 species 1 0 Corynebacterium imitans 917 1050174 625 Corynebacterium epidermidicanis 1 0 species 35757 Corynebacterium cystitidis 703 species 1 0 1386 0 2 no rank 2624378 702967 Corynebacterium sp. NML98-0116 762 species 0 1 1487956 624 Corynebacterium sp. ATCC 6931 0 1 species 1718 Corynebacterium glutamicum 1161 species 0 1 10 1 85028 family 4 0 Tsukamurellaceae 2409 Tsukamurella 2399 genus 0 3 25 1 2060 2061 species 1 0 Tsukamurella paurometabola 1171 species 1 0 Tsukamurella tyrosinosolvens 1203 57704 Dietziaceae 1440 family 0 4 6 85029 1 27 37914 1 genus 3 0 Dietzia 1434 2617939 781 no rank 1 0 712270 781 Dietzia sp. oral taxon 368 1 0 species 499555 626 Dietzia timorensis 0 1 species 1 1643684 13 0 4 order 1258 Nakamurellales family 0 3 Nakamurellaceae 1245 30 1 85031 1215 Nakamurella 0 2 genus 1 53460 14 species 1 0 Nakamurella multipartita 1201 53461 1 414714 3 0 4 order 2110 Catenulisporales Catenulisporaceae 2107 family 0 3 20 1 414877 1 414878 44 2 0 genus 2087 Catenulispora species 0 1 Catenulispora acidiphila 2043 304895 1643683 433 order 3 0 1 85032 1 433 Acidothermaceae 0 3 family 28048 1 2 432 Acidothermus 2 0 genus 430 Acidothermus cellulolyticus 1 0 species 28049 202 1 85004 Bifidobacteriales 928373 order 26 0 11359 1 31953 Bifidobacteriaceae 928171 family 0 25 genus 0 1 2686 2701 2702 species 1 0 Gardnerella vaginalis 2686 1606 1678 1 genus 0 19 Bifidobacterium 912100 158787 species 0 1 Bifidobacterium scardovii 3937 2838 Bifidobacterium thermophilum 1 0 species 33905 37164 Bifidobacterium breve 1 0 species 1685 36366 Bifidobacterium pseudocatenulatum 0 1 species 28026 0 2 species 42544 Bifidobacterium catenulatum 1 1686 18061 Bifidobacterium kashiwanohense 24483 subspecies 0 1 630129 1691 Bifidobacterium indicum 1006 species 1 0 491825 Bifidobacterium adolescentis 1 0 species 1680 638619 species 1 0 Bifidobacterium actinocoloniiforme 861 1683 0 1 species 8730 Bifidobacterium angulatum species 1 0 Bifidobacterium animalis 2514 28025 1684 1 0 species 1201 Bifidobacterium asteroides 35760 2072 Bifidobacterium choerinum 1 0 species 1694 2726 Bifidobacterium pseudolongum 0 1 species 1689 Bifidobacterium dentium 3383 species 1 0 species 1 0 Bifidobacterium bifidum 137214 1681 species 0 1 Bifidobacterium longum 135211 216816 0 1 species 902 Bifidobacterium coryneforme 1687 3 1 196082 genus 0 2 Parascardovia 1451 78258 Parascardovia denticolens 1448 species 0 1 575 Scardovia 2 0 genus 1 196081 1 78259 574 Scardovia inopinata 1 0 species 0 82 order 118940 Streptomycetales 1 85011 250 897 2062 1 Streptomycetaceae 118690 family 0 81 genus 0 5 Kitasatospora 7371 103 1 2063 Kitasatospora albolonga 1400 species 0 1 68173 Kitasatospora setae 1981 species 0 1 2066 2633591 1 0 no rank 2214 1 0 species 2214 Kitasatospora sp. MMS16-BH015 2018025 1894 1 0 species 1673 Kitasatospora aureofaciens 1883 1 4121 110422 Streptomyces 75 0 genus Streptomyces fulvissimus 961 species 1 0 68202 0 1 species 1454 Streptomyces albireticuli 1940 1642299 species 0 1 Streptomyces alfalfae 1178 1334 Streptomyces leeuwenhoekii 1 0 species 1437453 1889 0 1 species 1176 Streptomyces ambofaciens 38300 1 0 species 1365 Streptomyces pristinaespiralis 1915 species 1 0 Streptomyces lincolnensis 1589 1907 1209 Streptomyces glaucescens 0 1 species 1969 Streptomyces chartreusis 1215 species 1 0 1914 1208 Streptomyces lavendulae 1 0 species 42684 Streptomyces collinus 1261 species 1 0 species group 0 2 2777 1477431 1411 Streptomyces sampsonii 1 0 species 42239 Streptomyces coelicolor 1366 species 0 1 1902 1169025 1 0 species 770 Streptomyces pratensis Streptomyces violaceoruber 1212 species 0 1 1935 Streptomyces alboflavus 1624 species 1 0 67267 1280 Streptomyces avermitilis 1 0 species 33903 1469 Streptomyces gilvosporeus 0 1 species 553510 species 1 0 Streptomyces sp. S10(2016) 1297 1783515 1912 Streptomyces hygroscopicus 3185 species 1 0 1305 Streptomyces lividans 1 0 species 1916 species 1 0 Streptomyces venezuelae 2461 54571 68192 1369 Streptomyces cyaneogriseus 1 0 species species 0 1 Streptomyces malaysiensis 1370 92644 species 0 1 Streptomyces xiamenensis 1477 408015 47763 3624 Streptomyces lydicus 1 0 species 75293 Streptomyces autolyticus 1419 species 0 1 1394 Streptomyces noursei 1 0 species 1971 species 1 0 Streptomyces niveus 1124 193462 29303 1 0 species 1586 Streptomyces cattleya 2176 2 0 species group 629295 1482596 1122 species subgroup 0 1 Streptomyces griseus 1122 species 0 1 1911 1054 species subgroup 1 0 1482558 0 1 species 1054 Streptomyces globisporus 1908 1355015 species 0 1 Streptomyces pluripotens 921 1 0 species 1331 Streptomyces parvulus 146923 1930 species 0 1 Streptomyces scabiei 1498 1 0 species 1418 Streptomyces formicae 1616117 species 1 0 Streptomyces bingchenggensis 2078 379067 1901 1202 Streptomyces clavuligerus 1 0 species 1950 1 0 species 1022 Streptomyces peucetius 285473 996 Streptomyces rubrolavendulae 0 1 species Streptomyces puniciscabiei 1432 species 0 1 164348 species 1 0 Streptomyces reticuli 1475 1926 0 1 species 1467 Streptomyces albulus 68570 68280 1590 Streptomyces violaceusniger 1 0 species Streptomyces xinghaiensis 1293 species 1 0 1038928 2049881 Streptomyces sp. XZHG99 1219 species 1 0 68249 2552 Streptomyces pactum 1 0 species 68214 Streptomyces griseochromogenes 1412 species 0 1 1888 species 0 1 Streptomyces albus 2812 31977 0 24 no rank 2593676 1961713 1 0 species 1204 Streptomyces sp. MOE7 1849967 1398 Streptomyces sp. SAT1 0 1 species 1661694 0 1 species 1121 Streptomyces sp. Tue 6075 1812480 Streptomyces sp. fd1-xmd 1344 species 0 1 species 0 1 Streptomyces sp. SirexAA-E 913 862751 2059884 1 0 species 1682 Streptomyces sp. CMB-StM0423 Streptomyces sp. M56 1701 species 1 0 1495638 Streptomyces sp. TN58 1082 species 1 0 234612 1 0 species 1499 Streptomyces sp. P3 2135430 Streptomyces sp. S8 1030 species 0 1 1837283 1561022 species 1 0 Streptomyces sp. CCM_MD2014 1358 1751294 1099 Streptomyces sp. 4F 1 0 species Streptomyces sp. 3211 1481 species 1 0 1964449 820 Streptomyces sp. PAMC 26508 0 1 species 1265601 1841249 1 0 species 1923 Streptomyces sp. RTd22 Streptomyces sp. CLI2509 1046 species 1 0 1984801 species 0 1 Streptomyces sp. FR-008 1432 206662 2094021 species 1 0 Streptomyces sp. WAC00288 1046 Streptomyces sp. CFMR 7 1107 species 1 0 1649184 species 0 1 Streptomyces sp. CdTB01 1671 1725411 Streptomyces sp. Sge12 1630 species 1 0 1972846 1403 Streptomyces sp. CNQ-509 0 1 species 444103 1262452 Streptomyces sp. 769 1457 species 0 1 465541 Streptomyces sp. Mg1 1530 species 1 0 362257 Streptomyces vietnamensis 1737 species 0 1 41282 Pseudonocardiales 42 0 order 1 85010 95 41187 Pseudonocardiaceae 0 41 family 1 2070 709 294 1 1847 Pseudonocardia 8120 genus 0 8 6698 6 0 no rank 2619320 Pseudonocardia sp. EC080619-01 1087 species 0 1 1096856 1688404 species 1 0 Pseudonocardia sp. EC080610-09 1070 1690815 1172 Pseudonocardia sp. HH130630-07 1 0 species Pseudonocardia sp. EC080625-04 999 species 0 1 1096868 species 0 1 Pseudonocardia sp. HH130629-09 1077 1641402 445576 Pseudonocardia sp. AL041005-10 1293 species 0 1 240495 species 1 0 Pseudonocardia dioxanivorans 1128 1 1851 1 Saccharomonospora 410 genus 2 0 Saccharomonospora viridis 409 species 1 0 1852 10 1 43356 Kutzneria 2154 genus 2 0 43357 1 0 species 2144 Kutzneria albida genus 2 0 Alloactinosynnema 1206 8 1 674734 1198 0 1 no rank 2636053 1653480 1198 Alloactinosynnema sp. L-07 1 0 species 1810 Saccharopolyspora 0 2 genus 1835 1 13 species 0 1 Saccharopolyspora erythraea 1797 1836 Amycolatopsis 10439 genus 0 7 187 1 1813 31958 Amycolatopsis orientalis 2588 species 0 1 2993 no rank 2 0 2618356 1 0 species 1660 Amycolatopsis sp. AA4 1896961 0 1 species 1333 Amycolatopsis sp. BJA-103 1911175 208439 1 0 species 1248 Amycolatopsis japonica 1814 0 1 species 1411 Amycolatopsis methanolica species 0 1 Amycolatopsis mediterranei 2012 33910 0 2 genus 1924 Saccharothrix 1 2071 8 103731 species 0 1 Saccharothrix espanaensis 1916 1641 Lentzea 0 2 genus 1 165301 3 species 0 1 Lentzea guizhouensis 1638 1586287 65496 1 133 6 0 genus 5514 Actinoalloteichus Actinoalloteichus hymeniacidonis 948 species 1 0 340345 2644606 2160 no rank 0 2 1612551 1130 Actinoalloteichus sp. GBA129-24 0 1 species Actinoalloteichus sp. AHMU CJ021 1030 species 0 1 2072503 1153 Actinoalloteichus sp. ADI127-7 1 0 species 1612552 species 0 1 Actinoalloteichus hoggarensis 1120 1470176 2 0 genus 1676 Kibdelosporangium 1 2029 8 860235 1 0 species 1668 Kibdelosporangium phytohabitans 142577 1 8 1002 Prauserella 0 2 genus 530584 994 Prauserella marina 0 1 species 132 1 40566 genus 0 3 Actinosynnema 4582 42197 species 0 1 Actinosynnema pretiosum 2262 40567 1 0 species 2188 Actinosynnema mirum 1539 Glycomycetales 0 4 order 1 85014 3 39 1 85034 family 0 3 Glycomycetaceae 1536 12 1 283810 genus 2 0 Stackebrandtia 1497 283811 1485 Stackebrandtia nassauensis 1 0 species 33 0 order 25290 Propionibacteriales 1 85009 146 16502 Propionibacteriaceae 0 19 family 1 31957 361 0 1 genus 931 203133 931 0 1 no rank 2633994 0 1 species 931 Propionimicrobium sp. Marseille-P3275 1871034 1 1912215 16 1956 Acidipropionibacterium 0 2 genus 1748 1940 Acidipropionibacterium acidipropionici 0 1 species Cutibacterium 3131 genus 0 4 23 1 1912216 33010 species 1 0 Cutibacterium avidum 1502 Cutibacterium acnes 936 species 1 0 1747 Cutibacterium granulosum 670 species 0 1 33011 2801844 842 1 0 genus 1750 0 1 species 842 Pseudopropionibacterium propionicum Microlunatus 1285 genus 2 0 14 1 29404 29405 1271 Microlunatus phosphovorus 0 1 species genus 0 3 Propionibacterium 2792 45 1 1743 Propionibacterium freudenreichii 2087 species 0 1 1744 no rank 1 0 660 2608905 671223 0 1 species 660 Propionibacterium sp. oral taxon 193 47 1 72763 genus 5 0 Tessaracoccus 5204 2635419 1234 0 1 no rank 1909732 Tessaracoccus sp. T2.5-30 1234 species 1 0 Tessaracoccus flavus 1299 species 0 1 1610493 1396 Tessaracoccus aquimaris 1 0 species 1332264 399497 0 1 species 1228 Tessaracoccus flavescens 221 1 85015 Nocardioidaceae 8642 family 0 13 Micropruina 1102 genus 2 0 21 116071 1 75385 species 0 1 Micropruina glycogenica 1081 3533 Nocardioides 0 4 genus 1839 1 63 2045452 957 Nocardioides sp. 78 1 0 species no rank 1 0 1223 2615069 Nocardioides sp. JS614 1223 species 0 1 196162 species 1 0 Nocardioides dokdonensis 1290 450734 1082 Aeromicrobium 2 0 genus 1 2040 29 2041 0 1 species 1053 Aeromicrobium erythreum Kribbella 1441 genus 0 2 13 1 182639 species 1 0 Kribbella flavida 1428 182640 Pimelobacter 1263 genus 2 0 12 2044 1 1251 Pimelobacter simplex 1 0 species 2045 52018 no rank 1 0 291 species 1 0 Actinobacteria bacterium IMCC26256 291 1650658 7 0 order 5120 Frankiales 1 85013 12 family 6 0 Frankiaceae 5108 49 1 74712 116 1 1854 Frankia 5059 genus 0 5 species 1 0 Frankia alni 1201 1859 298654 0 1 species 1531 Frankia inefficax 1327 no rank 0 1 2632575 298653 Frankia sp. EAN1pec 1327 species 1 0 Frankia casuarinae 884 species 0 1 106370 0 8 order 3920 Geodermatophilales 1 1643682 10 0 7 family 3910 Geodermatophilaceae 1 85030 78 Modestobacter 1652 genus 0 2 41 1 88138 477641 1611 Modestobacter marinus 0 1 species 12 1 38501 genus 2 0 Blastococcus 1000 138336 1 0 species 988 Blastococcus saxobsidens 2 0 genus 1180 Geodermatophilus 1 1860 14 species 1 0 Geodermatophilus obscurus 1166 1861 1 85008 49 20123 Micromonosporales 0 20 order 20074 Micromonosporaceae 19 0 family 1 28056 279 103 1 1873 genus 0 4 Micromonospora 4610 Micromonospora aurantiaca 1553 species 0 1 47850 1003110 1237 Verrucosispora maris 0 1 species 2617518 1 0 no rank 1717 species 1 0 Micromonospora sp. L5 1717 648999 0 1 genus 5 Verrucosispora 84593 8547 Actinoplanes 6 0 genus 1 1865 175 species 1 0 Actinoplanes missouriensis 1691 1866 3 0 no rank 5012 2626549 134676 1556 Actinoplanes sp. SE50/110 1 0 species 649831 Actinoplanes sp. N902-109 1900 species 0 1 2033844 0 1 species 1556 Actinoplanes sp. SE50 1669 Actinoplanes friuliensis 0 1 species 196914 1 168694 49 2178 Salinispora 0 3 genus 168695 species 0 1 Salinispora tropica 1082 1047 Salinispora arenicola 0 1 species 168697 1 673534 62 4455 Plantactinospora 4 0 genus 2631981 4393 no rank 0 3 Plantactinospora sp. KBS50 1655 species 0 1 2024580 2108470 species 0 1 Plantactinospora sp. BC1 1345 Plantactinospora sp. BB1 1393 species 1 0 2071627 39 1 2037 order 20 0 Actinomycetales 26457 7805 1 2049 family 19 0 Actinomycetaceae 26418 9499 Actinomyces 0 9 genus 1 1654 182 1 0 species 938 Actinomyces pacaensis 1852377 2609248 3768 3 0 no rank 2081702 species 1 0 Actinomyces sp. oral taxon 897 1039 712122 species 0 1 Actinomyces sp. oral taxon 414 1600 1851395 species 0 1 Actinomyces sp. Chiba101 1129 111015 species 1 0 Actinomyces radicidentis 1477 860 Actinomyces gaoshouyii 1 0 species 1960083 2000 Actinomyces oris 0 1 species 544580 1912795 0 1 species 274 Actinomyces sp. VUL4_3 1 0 genus 1719 2529408 Actinomyces meyeri 1719 species 0 1 52773 2050 1 120 3489 Mobiluncus 0 2 genus 2051 Mobiluncus curtisii 3369 species 1 0 1 1 28263 Arcanobacterium 491 genus 2 0 28264 0 1 species 490 Arcanobacterium haemolyticum genus 0 2 Actinotignum 900 13 1 1653174 Actinotignum schaalii 887 species 0 1 59505 1069494 1 28 2 0 genus 2515 Trueperella species 1 0 Trueperella pyogenes 2487 1661 Rubrobacteria 1969 class 6 0 20 1 84995 1 84996 46 1949 Rubrobacterales 0 5 order 1903 Rubrobacteraceae 0 4 family 1 84997 31 42255 1 18 1872 Rubrobacter 3 0 genus 49319 1182 Rubrobacter xylanophilus 1 0 species 42256 0 1 species 672 Rubrobacter radiotolerans class 5 0 Thermoleophilia 2095 9 1 1497346 4 0 order 2086 Solirubrobacterales 1 588673 52 1 320583 5 3 0 family 2034 Conexibacteraceae genus 0 2 Conexibacter 2029 25 1 191494 191495 species 1 0 Conexibacter woesei 2004 1 84998 857 0 33 class 311053 Coriobacteriia 722 1 1643822 Eggerthellales 97158 order 18 0 96436 Eggerthellaceae 0 17 family 1 1643826 12359 0 3 genus 23045 Gordonibacter 1 644652 113 1335613 14040 Gordonibacter urolithinfaciens 1 0 species 1841863 0 1 species 8892 Gordonibacter massiliensis 6838 Slackia 0 2 genus 1 84108 9 Slackia heliotrinireducens 6829 species 1 0 84110 21613 Adlercreutzia 2 0 genus 1 447020 2 446660 0 1 species 21611 Adlercreutzia equolifaciens 0 3 genus 24116 Eggerthella 1 84111 311 1 0 species 17403 Eggerthella lenta 84112 6402 no rank 0 1 2648737 0 1 species 6402 Eggerthella sp. YY7918 502558 1 84162 1 1142 Cryptobacterium 2 0 genus 84163 0 1 species 1141 Cryptobacterium curtum 1 79603 12 2 0 genus 3949 Denitrobacterium 79604 Denitrobacterium detoxificans 3937 species 0 1 genus 2 0 Phoenicibacter 3374 7 1 1981050 1944646 Phoenicibacter massiliensis 3367 species 0 1 426 84999 1 order 0 14 Coriobacteriales 213038 1 1643824 480 7 0 family 21836 Atopobiaceae 1 133925 140 4 0 genus 19078 Olsenella 133926 species 1 0 Olsenella uli 5046 3373 no rank 1 0 2638792 712411 Olsenella sp. oral taxon 807 3373 species 1 0 1805478 Olsenella sp. Marseille-P2300 10519 species 0 1 1 0 genus 2267 2767353 1382 2267 Atopobium parvulum 1 0 species 1380 Atopobium 11 genus 0 1 Coriobacteriaceae 190776 family 6 0 1265 1 84107 genus 0 2 Collinsella 182711 56 102106 1 182655 Collinsella aerofaciens 0 1 species 74426 no rank 1 0 4086 84113 Coriobacteriaceae bacterium 68-1-3 4086 species 1 0 1531429 11 1 33870 Coriobacterium 2714 genus 0 2 Coriobacterium glomerans 2703 species 1 0 33871 1191 no rank 4 0 1752188 0 1 species 347 Actinobacteria bacterium IMCC19121 1848754 1848755 330 Actinobacteria bacterium IMCC26077 0 1 species species 0 1 Actinobacteria bacterium IMCC25003 243 1848255 1848756 Actinobacteria bacterium IMCC26103 271 species 1 0 Chloroflexi 18005 phylum 0 46 5 200795 1 class 7 0 Anaerolineae 3679 7 1 292625 Anaerolineales 3672 order 6 0 8 1 292629 3664 Anaerolineaceae 5 0 family 1 292628 18 741 1 0 genus 2019482 741 Brevefilum fermentans 0 1 species 1986204 1 0 no rank 1858 1324991 Anaerolineaceae bacterium oral taxon 439 1858 species 1 0 1889813 1047 Anaerolinea 0 2 genus 1 233189 13 1 0 species 1034 Anaerolinea thermophila 167964 52 1 32061 class 0 11 Chloroflexia 3816 1 32064 62 3764 Chloroflexales 10 0 order 1508594 5 0 suborder 1584 family 5 0 Chloroflexaceae 1584 2 1 1106 0 4 genus 1582 Chloroflexus 1 1107 67 152260 species 0 1 Chloroflexus aggregans 573 942 Chloroflexus aurantiacus 2 0 species 1 1108 471 strain 0 1 Chloroflexus sp. Y-400-fl 471 480224 4 0 suborder 2118 1508595 family 0 4 Roseiflexaceae 2118 11 1 1508635 1 120961 5 0 3 genus 2107 Roseiflexus Roseiflexus castenholzii 1177 species 1 0 120962 2609473 925 1 0 no rank 357808 925 Roseiflexus sp. RS-1 0 1 species 24 1 301297 class 9 0 Dehalococcoidia 3813 order 5 0 Dehalococcoidales 2160 2 1 1202465 2158 Dehalococcoidaceae 0 4 family 1 1202464 2 6 1 61434 Dehalococcoides 2156 genus 0 3 237581 372 no rank 1 0 1522671 species 1 0 Dehalococcoides sp. UCH007 372 Dehalococcoides mccartyi 1778 species 0 1 61435 670486 1 14 0 3 genus 1629 Dehalogenimonas 552810 1 0 species 711 Dehalogenimonas lykanthroporepellens 1839801 Dehalogenimonas formicexedens 904 species 1 0 class 0 5 Caldilineae 1835 4 1 475962 7 1 475963 Caldilineales 1831 order 0 4 1 475964 8 3 0 family 1824 Caldilineaceae Caldilinea 1816 genus 0 2 6 1 233191 133453 1810 Caldilinea aerophila 0 1 species 203 1382928 1 Ardenticatenia 2949 class 5 0 51 1382929 1 order 4 0 Ardenticatenales 2746 16 1382930 1 family 0 3 Ardenticatenaceae 2695 genus 0 2 Candidatus Promineofilum 2679 22 1 1988031 1806508 species 1 0 Candidatus Promineofilum breve 2657 1908 Thermomicrobia 8 0 class 1 189775 25 1363 4 0 subclass 85000 0 4 order 1363 Sphaerobacterales 1 85001 24 3 0 suborder 1339 255728 1 85002 8 1339 Sphaerobacteraceae 0 3 family 0 2 genus 1331 Sphaerobacter 1 2056 30 2057 Sphaerobacter thermophilus 1301 species 0 1 order 3 0 Thermomicrobiales 520 9 1 189776 511 Thermomicrobiaceae 0 2 family 1 189777 3 499 508 1 0 genus 1 0 species 508 Thermomicrobium roseum 500 1 544448 7 238842 Tenericutes 102 0 phylum 4755 no rank 0 2 2799557 0 2 genus 4755 Candidatus Izimaplasma 1 1912503 6 4749 0 1 no rank 2624196 species 0 1 Candidatus Izimaplasma sp. HR1 4749 1541959 713063 13636 2 0 no rank Tenericutes bacterium MO-XQ 6320 species 1 0 1911684 1911683 7316 Tenericutes bacterium MZ-XQ 0 1 species 1 31969 193 0 97 class 220444 Mollicutes 44 0 order 80391 Mycoplasmatales 1 2085 47 0 43 family 80344 Mycoplasmataceae 2092 1 289 4602 Ureaplasma 0 3 genus 1 2129 2 2130 species 0 1 Ureaplasma urealyticum 2397 1 0 species 2203 Ureaplasma parvum 134821 2767358 27749 genus 0 12 1266 Mycoplasma synoviae 1 0 species 2109 1642 Mycoplasma pulmonis 0 1 species 2107 2094 species 0 1 Mycoplasma arginini 2281 1620 Mycoplasma bovigenitalium 0 1 species 2112 Mycoplasma bovirhinis 2190 species 0 1 29553 171284 1 0 species 1891 Mycoplasma cynos 2115 1 0 species 3219 Mycoplasma fermentans Mycoplasma canis 2362 species 0 1 29555 3123 Mycoplasma agalactiae 0 1 species 2110 Mycoplasma pullorum 1107 species 0 1 48003 Mycoplasma californicum 2595 species 1 0 2113 4453 Mycoplasma bovis 0 1 species 28903 47704 Mycoplasma 27 0 genus 1 2093 724 2128 432 Mycoplasma flocculare 1 0 species 656088 3 0 species group 15718 species 1 0 Mycoplasma mycoides 6424 2102 Mycoplasma leachii 4259 species 0 1 2105 2095 species 1 0 Mycoplasma capricolum 5035 1 0 species 816 Mycoplasma bovoculi 45362 species 0 1 Mycoplasma gallisepticum 1307 2096 Mycoplasma suis 422 species 1 0 57372 Mycoplasma dispar 838 species 1 0 86660 1180 no rank 1 0 2683645 species 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1180 1749074 136241 1 0 species 198 Mycoplasma haemocanis 2111 1042 Mycoplasma arthritidis 0 1 species 2118 2290 Mycoplasma mobile 1 0 species 2098 1 0 species 3031 Mycoplasma hominis Mycoplasma haemofelis 145 species 1 0 29501 725 Mycoplasma hyopneumoniae 0 1 species 2099 171632 1 0 species 385 Mycoplasma ovis 1243 Mycoplasma parvum 1 0 species 984991 0 1 species 3539 Mycoplasma penetrans 28227 2100 Mycoplasma hyorhinis 2628 species 0 1 species 0 1 Mycoplasma canadense 2412 29554 1 0 species 231 Mycoplasma wenyonii 65123 647 Mycoplasma genitalium 0 1 species 2097 50052 species 0 1 Mycoplasma crocodyli 1922 species 1 0 Mycoplasma yeatsii 2846 51365 Mycoplasma putrefaciens 2816 species 0 1 2123 167 Mycoplasma pneumoniae 1 0 species 2104 1 186328 108 105857 Entomoplasmatales 39 0 order Entomoplasmataceae 33078 family 0 14 71 1 33925 1 46239 349 23372 Mesoplasma 8 0 genus 2151 0 1 species 5357 Mesoplasma florum 138853 species 1 0 Mesoplasma lactucae 4800 225999 3216 Mesoplasma syrphidae 0 1 species 2052 Mesoplasma tabanidae 0 1 species 219745 2149 2541 Mesoplasma entomophilum 0 1 species species 0 1 Mesoplasma chauliocola 2744 216427 0 1 species 2313 Mesoplasma coleopterae 324078 Entomoplasma 9635 genus 5 0 63 1 46238 Entomoplasma luminosum 2473 species 1 0 214888 81459 0 1 species 3798 Entomoplasma melaleucae 74700 1052 Entomoplasma freundtii 1 0 species 215578 1 0 species 2249 Entomoplasma somnilux 24 0 family 72671 Spiroplasmataceae 2131 1 206 1 2132 1492 72465 Spiroplasma 0 23 genus species 0 1 Spiroplasma apis 3204 2137 Spiroplasma chrysopicola 1816 species 0 1 216933 2959 Spiroplasma sabaudiense 0 1 species 216944 2145 species 0 1 Spiroplasma taiwanense 4529 216945 1704 Spiroplasma syrphidicola 0 1 species 216935 0 1 species 4890 Spiroplasma culicicola 1114980 1 0 species 2102 Spiroplasma atrichopogonis 2139 1 0 species 3930 Spiroplasma clarkii Spiroplasma citri 2186 species 0 1 2133 315358 species 0 1 Spiroplasma eriocheiris 1945 Spiroplasma diminutum 4415 species 0 1 216936 4737 Spiroplasma floricola 0 1 species 216937 3248 Spiroplasma helicoides 1 0 species 216938 2144 Spiroplasma mirum 2056 species 0 1 216934 Spiroplasma corruscae 2911 species 1 0 species 1 0 Spiroplasma monobiae 2614 2136 2637901 2 0 no rank 5014 1914410 species 1 0 Spiroplasma sp. NBRC 100390 2507 1 0 species 2507 Spiroplasma sp. TU-14 1898044 216942 4330 Spiroplasma litorale 1 0 species 4286 Spiroplasma cantharicola 1 0 species 362837 species 0 1 Spiroplasma turonicum 3642 216946 47834 Spiroplasma kunkelii 4455 species 1 0 1 186329 32 13 0 order 34003 Acholeplasmatales 1 2146 133 0 12 family 33971 Acholeplasmataceae 1 33926 189 11478 Candidatus Phytoplasma 6 0 genus species group 3 0 7229 85620 2389 Maize bushy stunt phytoplasma 1 0 species 202462 100379 2551 Onion yellows phytoplasma 1 0 species 229545 2289 Aster yellows witches'-broom phytoplasma 0 1 species 1 0 species group 2220 85632 2220 Candidatus Phytoplasma australiense 1 0 species 59748 85630 1840 1 0 species group 1 0 species 1840 Candidatus Phytoplasma mali 37692 339 2147 1 Acholeplasma 22360 genus 5 0 2148 species 1 0 Acholeplasma laidlawii 4786 species 1 0 Acholeplasma oculi 7203 35623 38986 0 1 species 7218 Acholeplasma palmae Acholeplasma brassicae 2814 species 0 1 61635 clade 95 0 50202 1783257 204428 7956 22 0 phylum Chlamydiia 7956 class 0 22 15 204429 1 1 51291 19 0 14 order 5261 Chlamydiales 9 1 809 Chlamydiaceae 5242 family 0 13 1113537 12 0 no rank 5233 91 1 810 genus 12 0 Chlamydia 5233 83559 1 0 species 135 Chlamydia suis 83558 426 Chlamydia pneumoniae 0 1 species 83556 species 1 0 Chlamydia felis 439 1457153 Chlamydia gallinacea 736 species 0 1 species 1 0 Chlamydia psittaci 449 83554 Chlamydia pecorum 525 species 1 0 85991 83557 1 0 species 489 Chlamydia caviae 1 0 species 674 Chlamydia trachomatis 813 420 Chlamydia abortus 1 0 species 83555 83560 346 Chlamydia muridarum 0 1 species species 0 1 Chlamydia avium 503 1457141 3 1 1963360 Parachlamydiales 2680 order 7 0 15 1 92712 family 0 2 Simkaniaceae 209 genus 0 1 194 34093 species 1 0 Simkania negevensis 194 83561 Waddliaceae 414 family 0 2 1 1 92714 71666 413 0 1 genus species 1 0 Waddlia chondrophila 413 71667 92713 family 0 2 2054 genus 1 0 1704 83551 83552 1704 Parachlamydia acanthamoebae 1 0 species 350 genus 0 1 282132 350 Candidatus Protochlamydia naegleriophila 0 1 species 389348 phylum 28 0 Verrucomicrobia 12352 24 1 74201 class 0 2 117 134549 1 134550 2 117 Candidatus Xiphinematobacter 2 0 genus 0 1 no rank 115 2648876 Candidatus Xiphinematobacter sp. Idaho Grape 115 species 1 0 1704307 6050 Opitutae 0 11 class 1 414999 78 0 3 order 554 415001 Puniceicoccaceae 554 family 3 0 3 415002 1 Coraliomargarita 551 genus 2 0 2 1 442430 549 Coraliomargarita akajimensis 1 0 species 395922 1 415000 91 7 0 order 5418 Opitutales 0 6 family 5327 Opitutaceae 1 134623 78 278955 no rank 0 1 2058 794903 species 0 1 Opitutaceae bacterium TAV5 2058 1 178440 10 2 0 genus 1542 Opitutus 107709 1 0 species 1532 Opitutus terrae 31 1 1961799 genus 2 0 Lacunisphaera 1649 1838286 species 0 1 Lacunisphaera limnophila 1618 Methylacidiphilae 994 class 6 0 6 1 1955630 0 5 order 988 Methylacidiphilales 1 717963 4 Methylacidiphilaceae 984 family 0 4 1 1 717964 983 Methylacidiphilum 3 0 genus 1 511745 1 1 0 species 497 Methylacidiphilum fumariolicum 591154 485 Methylacidiphilum infernorum 0 1 species 511746 0 2 no rank 1980 417295 0 1 species 1068 Verrucomicrobia bacterium 2026799 Verrucomicrobia bacterium IMCC26134 912 species 1 0 1637999 6 0 class 3187 Verrucomicrobiae 1 203494 9 order 5 0 Verrucomicrobiales 3178 32 1 48461 family 0 4 Akkermansiaceae 3146 27 1 1647988 0 3 genus 3119 Akkermansia 1 239934 18 239935 1687 Akkermansia muciniphila 1 0 species Akkermansia glycaniphila 1414 species 0 1 1679444 256845 10811 3 0 phylum 1 1313211 42 3 0 class 10811 Lentisphaeria Victivallales 10769 order 0 2 1163 1 278082 1674876 0 1 no rank 9606 9606 Victivallales bacterium CCUG 44730 0 1 species 2094242 1 203682 7 0 37 phylum 17934 Planctomycetes class 7 0 Phycisphaerae 3902 14 1 666505 4 0 order 1298 Phycisphaerales 1 666506 27 Phycisphaeraceae 1271 family 3 0 5 1 666507 1 666508 10 0 2 genus 1266 Phycisphaera Phycisphaera mikurensis 1256 species 0 1 547188 2483366 order 0 2 2590 2590 family 0 2 2483367 2483368 genus 0 2 2590 1940790 1717 Phycisphaerae bacterium L21-RPul-D3 1 0 species 1941349 Phycisphaerae bacterium ST-PulAB-D4 873 species 0 1 83 1 203683 class 27 0 Planctomycetia 12735 2691354 order 5 0 1886 2691357 family 4 0 939 2 1 123 Pirellula 516 genus 0 2 Pirellula staleyi 514 species 0 1 125 1 1 265488 Rhodopirellula 423 genus 0 2 0 1 species 422 Rhodopirellula baltica 265606 2691358 0 1 family 947 947 genus 0 1 1676125 1331910 947 Thermogutta terrifontis 0 1 species 2691356 3537 order 0 7 3537 Isosphaeraceae 0 7 family 1 1763524 34 Singulisphaera 1104 genus 2 0 8 1 466152 466153 Singulisphaera acidiphila 1096 species 1 0 5 1 127 genus 2 0 Isosphaera 652 128 647 Isosphaera pallida 0 1 species 25 1 1763521 Paludisphaera 1747 genus 0 2 1387353 1 0 species 1722 Paludisphaera borealis 11 0 order 6363 Planctomycetales 1 112 200 Planctomycetaceae 6163 family 10 0 51 1 126 Fuerstia 761 genus 2 0 15 1 1936111 0 1 species 746 Fuerstia marisgermanicae 1891926 3 0 genus 3593 Planctomyces 1 118 450 2648843 0 2 no rank 3143 1632864 1 0 species 939 Planctomyces sp. SH-PL14 1636152 0 1 species 2204 Planctomyces sp. SH-PL62 1 1649480 14 2 0 genus 911 Planctopirus Planctopirus limnophila 897 species 0 1 120 0 2 genus 847 Rubinisphaera 1 1649490 1 species 0 1 Rubinisphaera brasiliensis 846 119 2691355 866 order 3 0 1 1 1914233 Gemmataceae 866 family 0 3 2 113 1 Gemmata 865 genus 0 2 2622970 863 no rank 0 1 1630693 species 1 0 Gemmata sp. SH-PL17 863 0 2 class 1290 2517206 2 0 order 1290 Candidatus Brocadiales 1 1127829 16 1274 1 0 family 1127830 1274 0 1 genus 380738 174633 Candidatus Kuenenia stuttgartiensis 1274 species 1 0 134625 5 0 phylum 1149 5 0 class 1149 Kiritimatiellae 1 1921781 9 Kiritimatiellales 1140 order 4 0 11 1 1921782 1129 Kiritimatiellaceae 0 3 family 1921783 1 8 Kiritimatiella 1121 genus 0 2 21 1 1921784 1307763 species 0 1 Kiritimatiella glycovorans 1100 phylum 0 11 Elusimicrobia 4204 3 1 74152 6 0 class 2709 Endomicrobia 1 447830 2 1783344 1 6 2707 Endomicrobiales 0 5 order family 0 4 Endomicrobiaceae 2701 11 1 1783343 2 1 1408194 Endomicrobium 2690 genus 0 3 1408204 733 Candidatus Endomicrobium trichonymphae 0 1 species 1408281 species 0 1 Endomicrobium proavitum 1955 99260 no rank 1 0 717 species 0 1 uncultured Termite group 1 bacterium 717 167965 class 0 3 775 641853 order 3 0 Elusimicrobiales 775 15 1 641854 Elusimicrobiaceae 760 family 2 0 13 1 641876 0 1 genus 747 423604 Elusimicrobium minutum 747 species 1 0 423605 203691 phylum 0 57 104386 class 57 0 Spirochaetia 104386 220 203692 1 29588 Brachyspirales 7 0 order 1643686 1 22 29566 Brachyspiraceae 6 0 family 1 143786 115 1 29521 135 0 5 genus 29451 Brachyspira 0 1 species 9797 Brachyspira pilosicoli 52584 84377 Brachyspira intermedia 4281 species 1 0 7819 Brachyspira murdochii 1 0 species 84378 159 species 1 0 Brachyspira hyodysenteriae 7419 1643688 12652 8 0 order 27 1 170 Leptospiraceae 12652 family 0 8 1 171 58 11592 Leptospira 6 0 genus 174 1 0 species 1038 Leptospira borgpetersenii 2306 Leptospira santarosai 1 0 species 28183 Leptospira biflexa 592 species 0 1 172 173 species 1 0 Leptospira interrogans 5204 Leptospira alstonii 2394 species 0 1 28452 1033 genus 1 0 338321 29510 Turneriella parva 1033 species 0 1 Spirochaetales 61926 order 41 0 816 1 136 679 1 137 Spirochaetaceae 39208 family 0 23 2 0 genus 1046 Salinispira 1 1616789 1 1307761 1045 Salinispira pacifica 0 1 species genus 12 0 Treponema 30454 637 1 157 Treponema pedis 1547 species 1 0 409322 53435 Treponema paraluiscuniculi 130 species 1 0 species 1 0 Treponema pallidum 148 160 167 0 1 species 10517 Treponema succinifaciens 2512 Treponema brennaborense 0 1 species 81028 158 0 1 species 2597 Treponema denticola 150829 Treponema azotonutricium 1683 species 0 1 215591 species 0 1 Treponema caldarium 1399 Treponema primitia 1437 species 0 1 88058 no rank 1 0 3626 2638727 1539298 1 0 species 3626 Treponema sp. OMZ 838 species 1 0 Treponema putidum 4221 221027 4 0 genus 3441 Sphaerochaeta 1 399320 12 species 1 0 Sphaerochaeta coccoides 1032 273376 1131707 species 0 1 Sphaerochaeta pleomorpha 1041 1131703 species 0 1 Sphaerochaeta globosa 1356 1911556 genus 0 1 959 55206 0 1 species 959 Sediminispirochaeta smaragdinae 64 146 1 Spirochaeta 2629 genus 0 3 46355 1 0 species 1076 Spirochaeta africana 1 0 species 1489 Spirochaeta thermophila 154 21902 Borreliaceae 0 17 family 1643685 1 9 1 138 97 8 0 genus 11046 Borrelia 40834 species 0 1 Borrelia duttonii 1614 143 Borrelia anserina 968 species 1 0 species 1 0 Borrelia hermsii 1086 140 142 Borrelia turicatae 1296 species 1 0 Borrelia parkeri 1159 species 1 0 141 3550 Borrelia miyamotoi 0 1 species 47466 species 0 1 Borrelia recurrentis 1276 44449 Borreliella 10847 genus 8 0 314 1 64895 Borreliella bavariensis 839 species 1 0 664662 62088 species 0 1 Borreliella valaisiana 1244 Borrelia mayonii 1266 species 1 0 1674146 29519 Borreliella garinii 2512 species 1 0 1 0 species 2603 Borreliella burgdorferi 139 29518 species 0 1 Borreliella afzelii 1101 64897 968 Borreliella bissettii 0 1 species 2323 2362 no rank 0 3 1783234 clade 0 3 2362 95818 548 0 1 phylum 1895827 548 0 1 no rank species 1 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 548 2056494 1814 clade 2 0 95901 2497643 0 2 class 1814 1814 order 0 2 2497644 2497645 family 2 0 1814 1814 Candidatus Babela 0 2 genus 1 1551504 67 1 0 species 1747 Candidatus Babela massiliensis 673862 2155 phylum 5 0 200938 17 1 118001 Chrysiogenetes 2155 class 5 0 0 4 order 2138 Chrysiogenales 189769 1 29 family 3 0 Chrysiogenaceae 2109 26 189770 1 Desulfurispirillum 2083 genus 2 0 4 1 393029 1 0 species 2079 Desulfurispirillum indicum 936456 7719 phylum 13 0 40117 54 1 203693 Nitrospira 7719 class 13 0 7665 Nitrospirales 0 12 order 1 189778 48 35 1 189779 Nitrospiraceae 7617 family 11 0 28261 3564 0 1 genus 0 1 species 3564 Thermodesulfovibrio yellowstonii 28262 0 5 genus 2574 Nitrospira 1 1234 21 1715989 1 0 species 464 Candidatus Nitrospira inopinata 0 1 species 690 Nitrospira defluvii 330214 0 1 species 851 Nitrospira moscoviensis 42253 1 0 species 548 Nitrospira japonica 1325564 genus 4 0 Leptospirillum 1444 15 1 179 261385 species group 0 1 470 470 Leptospirillum sp. Group II 'CF-1' 1 0 species 1660083 655606 1 0 species group 399 species 1 0 Leptospirillum ferrooxidans 399 180 261386 560 species group 1 0 0 1 species 560 Leptospirillum ferriphilum 178606 6378 phylum 0 10 508458 31 1 649775 Synergistia 6378 class 0 10 order 0 9 Synergistales 6347 48 1 649776 1 649777 109 6299 Synergistaceae 8 0 family 81461 1 27 807 Thermanaerovibrio 0 2 genus 780 Thermanaerovibrio acidaminovorans 1 0 species 81462 genus 0 1 464 49894 0 1 species 464 Acetomicrobium mobile 97477 1 0 genus 420 336260 420 Thermovirga lienii 0 1 species 336261 3800 Cloacibacillus 2 0 genus 1 508459 10 3790 Cloacibacillus porcorum 0 1 species 1197717 81466 genus 1 0 699 0 1 species 699 Aminobacterium colombiense 81468 32066 205860 0 25 phylum 83 1 203490 class 0 25 Fusobacteriia 205860 206 1 203491 order 24 0 Fusobacteriales 205777 287 1 1129771 family 11 0 Leptotrichiaceae 45214 32068 6747 1 0 genus 1 0 species 6747 Sebaldella termitidis 826 9882 Streptobacillus 0 2 genus 1 34104 4 34105 9878 Streptobacillus moniliformis 1 0 species 8369 Sneathia 2 0 genus 1 168808 3 187101 species 1 0 Sneathia amnii 8366 32067 1 35 19929 Leptotrichia 5 0 genus 4261 Leptotrichia buccalis 1 0 species 40542 15633 3 0 no rank 2633022 Leptotrichia sp. oral taxon 498 5227 species 1 0 712368 712357 species 0 1 Leptotrichia sp. oral taxon 212 5059 1785996 species 0 1 Leptotrichia sp. oral taxon 847 5347 203492 1 198 160357 Fusobacteriaceae 0 12 family 1 167639 6 0 2 genus 5309 Ilyobacter Ilyobacter polytropus 5303 species 1 0 167642 0 9 genus 154850 Fusobacterium 1 848 664 861 species 1 0 Fusobacterium ulcerans 9131 0 1 species 21867 Fusobacterium varium 856 850 Fusobacterium mortiferum 13662 species 1 0 860 0 1 species 26381 Fusobacterium periodonticum 15810 Fusobacterium hwasookii 1 0 species 1583098 859 Fusobacterium necrophorum 3049 species 1 0 57008 Fusobacterium nucleatum 1 0 species 851 849 species 0 1 Fusobacterium gonidiaformans 7278 755198 clade 379 0 1783270 68336 747688 clade 0 364 1134404 4959 phylum 0 6 1 795747 7 6 0 class 4959 Ignavibacteria 1 795748 24 5 0 order 4952 Ignavibacteriales 1407 family 0 2 1334117 2 0 genus 1407 Melioribacter 1 1134403 7 Melioribacter roseus 1400 species 0 1 1134405 3521 family 2 0 795749 1 795750 7 3521 Ignavibacterium 2 0 genus Ignavibacterium album 3514 species 1 0 591197 14171 0 22 phylum 1090 14171 Chlorobia 0 22 class 191410 1 92 84 1 191411 order 21 0 Chlorobiales 14079 92 1 191412 Chlorobiaceae 13995 family 0 20 0 2 genus 1401 Chloroherpeton 100715 1 6 100716 species 1 0 Chloroherpeton thalassium 1395 5786 0 8 no rank 274493 1 1091 18 5 0 genus 4323 Chlorobium 1582 Chlorobium phaeobacteroides 0 1 species 1096 1 0 species 961 Chlorobium chlorochromatii 337090 1 0 species 944 Chlorobium limicola 1092 818 Chlorobium phaeovibrioides 1 0 species 1094 1 1099 19 1463 Pelodictyon 3 0 genus 1100 1 0 species 886 Pelodictyon luteolum 1 0 species 558 Pelodictyon phaeoclathratiforme 34090 1 1101 30 5 0 genus 2624 Prosthecochloris 2632826 0 3 no rank 2054 1974213 Prosthecochloris sp. HL-130-GSB 668 species 0 1 281093 1 0 species 808 Prosthecochloris sp. GSB1 1868325 species 0 1 Prosthecochloris sp. CIB 2401 578 1102 0 1 species 540 Prosthecochloris aestuarii 37 1 256319 genus 0 4 Chlorobaculum 4092 274537 1 0 species 1360 Chlorobaculum limnaeum 1 0 species 1266 Chlorobaculum tepidum 1097 274539 species 1 0 Chlorobaculum parvum 1429 phylum 0 336 Bacteroidetes 728558 58 1 976 149 768503 1 class 0 57 Cytophagia 51542 51393 Cytophagales 56 0 order 1 768507 320 family 0 2 2230 2762301 1 869806 1 2230 Marivirga 0 2 genus Marivirga tractuosa 2229 species 1 0 1006 11577 Cytophagaceae 0 16 family 1 89373 57 genus 0 2 Cytophaga 1987 5 1 978 985 species 1 0 Cytophaga hutchinsonii 1982 0 2 genus 1125 Runella 1 105 3 0 1 species 1122 Runella slithyformis 106 1 107 26 4176 Spirosoma 0 6 genus 1211326 species 1 0 Spirosoma aerolatum 879 2057025 Spirosoma sp. HA7 851 species 0 1 1379870 species 1 0 Spirosoma radiotolerans 648 Spirosoma rigui 811 species 1 0 564064 1178516 961 Spirosoma montaniterrae 0 1 species 861914 genus 0 1 600 2620963 0 1 no rank 600 species 1 0 Fibrella sp. ES10-3-2-2 600 1834519 1 120831 9 2076 Dyadobacter 0 2 genus 2067 Dyadobacter fermentans 0 1 species 94254 1 319458 435 1556 Leadbetterella 0 2 genus species 1 0 Leadbetterella byssophila 1121 316068 17287 Hymenobacteraceae 16 0 family 1 1853232 108 13 1 323449 Pontibacter 2131 genus 0 3 400092 1084 Pontibacter korlensis 0 1 species 388950 1034 Pontibacter akesuensis 0 1 species 255 1 89966 genus 8 0 Hymenobacter 12127 species 0 1 Hymenobacter sedentarius 1896 1411621 species 1 0 Hymenobacter swuensis 1507 1446467 no rank 0 5 8469 2615202 1356852 1824 Hymenobacter sp. APR13 0 1 species 1484118 2240 Hymenobacter sp. PAMC 26628 0 1 species 1385663 species 0 1 Hymenobacter sp. DG25A 1328 1323 Hymenobacter sp. DG25B 1 0 species 1385664 1484116 1754 Hymenobacter sp. PAMC 26554 1 0 species 2921 Rufibacter 4 0 genus 1 1379908 6 512763 1 0 species 1045 Rufibacter tibetensis 2639626 1870 2 0 no rank 1379909 Rufibacter sp. DG15C 799 species 1 0 1379910 1071 Rufibacter sp. DG31D 0 1 species 1853234 family 2 0 1305 Persicobacter 1305 genus 0 2 2 1 59740 2664020 no rank 1 0 1303 Persicobacter sp. JZB09 1303 species 0 1 1085624 8 0 family 7562 Cyclobacteriaceae 1 563798 452 genus 1 0 849 246875 Algoriphagus sp. M8-2 849 species 1 0 1727163 genus 0 3 Cyclobacterium 2885 33 68288 1 104 species 0 1 Cyclobacterium marinum 1522 320787 0 1 species 1330 Cyclobacterium amurskyense 1 390846 2 788 Echinicola 2 0 genus 390884 0 1 species 786 Echinicola vietnamensis 232244 1 0 genus 2588 232259 2588 Belliella baltica 1 0 species family 0 3 Bernardetiaceae 5450 22 1937968 1 Bernardetia 5428 genus 0 2 4 1 1937972 species 1 0 Bernardetia litoralis 5424 999 4517 Flammeovirgaceae 4 0 family 1 200667 19 6 59739 1 genus 2 0 Flammeovirga 3160 3154 0 1 no rank 2637820 1191459 Flammeovirga sp. MY04 3154 species 0 1 1338 1 0 no rank 340671 1257021 1338 Flammeovirgaceae bacterium 311 1 0 species family 4 0 Amoebophilaceae 1145 1 1 1501348 281119 839 1 0 genus 281120 Candidatus Amoebophilus asiaticus 839 species 0 1 genus 2 0 Candidatus Cardinium 305 1 1 273135 2641185 0 1 no rank 304 249402 304 Cardinium endosymbiont of Encarsia pergandiella 1 0 species 33 1 117747 class 0 24 Sphingobacteriia 25639 1 200666 54 25606 Sphingobacteriales 0 23 order 30 1 84566 family 0 22 Sphingobacteriaceae 25552 0 2 genus 1650 Solitalea 1 929509 1 995 Solitalea canadensis 1649 species 0 1 10 1 423349 genus 0 4 Mucilaginibacter 3851 2617802 1 0 no rank 1042 0 1 species 1042 Mucilaginibacter sp. PAMC 26640 1300914 species 1 0 Mucilaginibacter gotjawali 1410 1550579 species 0 1 Mucilaginibacter sp. BJC16-A31 1389 1234841 1 1649482 24 1830 Pseudopedobacter 2 0 genus Pseudopedobacter saltans 1806 species 0 1 151895 1 0 no rank 1709 84568 1986952 species 1 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1709 Pedobacter 6346 genus 6 0 35 1 84567 188932 0 1 species 1365 Pedobacter cryoconitis 1627 Pedobacter ginsengisoli 0 1 species 363852 species 1 0 Pedobacter steynii 1085 430522 Pedobacter heparinus 1400 species 1 0 984 2628915 no rank 1 0 834 1727164 834 Pedobacter sp. PACM 27299 1 0 species 0 6 genus 10136 Sphingobacterium 1 28453 42 9180 no rank 4 0 2609468 3380 Sphingobacterium sp. ML3W 1 0 species 1538644 2003121 2438 Sphingobacterium sp. G1-14 0 1 species 743722 0 1 species 1305 Sphingobacterium sp. 21 1933220 1 0 species 2057 Sphingobacterium sp. B29 914 Sphingobacterium mizutaii 0 1 species 1010 1 200643 175 0 74 class 373904 Bacteroidia 9366 Marinilabiliales 12 0 order 1 1970189 14 0 3 family 1388 Prolixibacteraceae 1 1471398 79 1309 Draconibacterium 0 2 genus 1 1471399 8 0 1 species 1301 Draconibacterium orientale 1168034 2250 Salinivirgaceae 3 0 family 1 1970190 26 2224 Salinivirga 2 0 genus 1 1970191 3 species 0 1 Salinivirga cyanobacteriivorans 2221 1307839 2 1 1573805 family 0 2 Marinifilaceae 3404 3402 1 0 genus 2060722 1 0 species 3402 Marinifilaceae bacterium SPP2 1717717 31 1 558415 Marinilabiliaceae 2310 family 3 0 Alkalitalea 2279 genus 0 2 2 1193324 1 2277 Alkalitalea saponilacus 1 0 species 889453 1 171549 362 364363 Bacteroidales 61 0 order 185291 no rank 0 1 1597 species 1 0 Bacteroidales bacterium CF 1597 1400053 0 5 no rank 53181 333046 1 511434 12 2644 Candidatus Azobacteroides 2 0 genus Candidatus Azobacteroides pseudotrichonymphae 2632 species 0 1 511435 50537 genus 3 0 909656 29595 Bacteroides vulgatus 0 1 species 821 376805 Bacteroides salanitronis 8926 species 1 0 12016 Bacteroides dorei 0 1 species 357276 4792 Dysgonamonadaceae 7 0 family 1 2005520 2 Petrimonas 1254 genus 2 0 6 307628 1 Petrimonas mucosa 1248 species 0 1 1642646 1396 Proteiniphilum 0 2 genus 1 294702 44 Proteiniphilum saccharofermentans 1352 species 1 0 1642647 genus 0 2 Fermentimonas 2140 1 1 1784836 1562970 2139 Fermentimonas caenicola 0 1 species 1 171552 21 11 0 family 34491 Prevotellaceae 34470 Prevotella 10 0 genus 1 838 75 species 1 0 Prevotella fusca 2237 589436 0 1 species 1966 Prevotella melaninogenica 28132 52227 0 1 species 3423 Prevotella dentalis 28131 Prevotella intermedia 17102 species 0 1 1554 0 1 no rank 2638335 652716 1554 Prevotella sp. oral taxon 299 0 1 species 28129 2255 Prevotella denticola 0 1 species 76123 0 1 species 1183 Prevotella enoeca 0 1 species 1901 Prevotella jejuni 1177574 839 1 0 species 2774 Prevotella ruminicola 165791 Bacteroidaceae 11 0 family 1 815 26 10 0 genus 165765 Bacteroides 1 816 6302 246787 species 0 1 Bacteroides cellulosilyticus 15659 28113 2940 Bacteroides heparinolyticus 1 0 species 3222 Bacteroides helcogenes 1 0 species 290053 0 1 species 4822 Bacteroides zoogleoformans 28119 20116 Bacteroides thetaiotaomicron 1 0 species 818 28116 Bacteroides ovatus 11721 species 0 1 817 1 0 species 26397 Bacteroides fragilis 0 1 species 12000 Bacteroides caecimuris 1796613 47678 0 1 species 62586 Bacteroides caccae family 3 0 Barnesiellaceae 13032 12 2005519 1 397864 1 46 0 2 genus 13020 Barnesiella 397865 12974 Barnesiella viscericola 1 0 species 1 1853231 1 Odoribacteraceae 8963 family 3 0 Odoribacter 8962 genus 2 0 7 1 283168 28118 8955 Odoribacter splanchnicus 0 1 species 2651 Paludibacteraceae 0 3 family 1 2005523 25 genus 2 0 Paludibacter 2626 7 1 346096 Paludibacter propionicigenes 2619 species 0 1 185300 31172 Rikenellaceae 5 0 family 171550 1 15 1 239759 12 29656 Alistipes 0 2 genus species 0 1 Alistipes finegoldii 29644 214856 1611681 1 7 1501 Mucinivorans 2 0 genus 1494 Mucinivorans hirudinis 1 0 species 1433126 113 1 2005525 family 7 0 Tannerellaceae 45472 375288 1 470 39555 Parabacteroides 3 0 genus 2649774 1 0 no rank 25176 1 0 species 25176 Parabacteroides sp. CT06 2025876 0 1 species 13909 Parabacteroides distasonis 823 genus 0 3 Tannerella 5804 15 1 195950 28112 species 1 0 Tannerella forsythia 3770 no rank 0 1 2019 2620507 712710 species 0 1 Tannerella sp. oral taxon HOT-286 2019 21 1 171551 Porphyromonadaceae 2859 family 4 0 836 1 26 2838 Porphyromonas 0 3 genus 837 Porphyromonas gingivalis 1984 species 1 0 1 0 species 828 Porphyromonas asaccharolytica 28123 13 1 1853228 class 0 16 Chitinophagia 9491 9478 Chitinophagales 0 15 order 1 1853229 32 9446 Chitinophagaceae 0 14 family 1 563835 120 1236 Arachidicoccus 0 2 genus 1 1769012 1 1235 no rank 0 1 2636138 1 0 species 1235 Arachidicoccus sp. BS20 1850526 1 379899 3 0 3 genus 2437 Niabella 1371 Niabella ginsenosidivorans 1 0 species 1176587 446683 1 0 species 1063 Niabella soli 354354 1 3 2 0 genus 1584 Niastella 1581 Niastella koreensis 1 0 species 354356 3 398041 1 Flavisolibacter 999 genus 2 0 species 1 0 Flavisolibacter tropicus 996 1492898 0 2 genus 2171 79328 2029983 1134 Chitinophagaceae bacterium 13 1 0 species 79329 1037 Chitinophaga pinensis 1 0 species 649460 1 8 0 2 genus 899 Filimonas species 0 1 Filimonas lacunae 891 477680 1 1937959 35 0 8 class 1957 Saprospiria 0 7 order 1922 Saprospirales 1 1936988 14 4 1 89374 family 0 3 Saprospiraceae 578 2 0 genus 574 Saprospira 1 1007 17 1008 0 1 species 557 Saprospira grandis 3 0 family 1330 Haliscomenobacteraceae 1 1937961 1 genus 0 2 Haliscomenobacter 1329 2 1 2349 2350 Haliscomenobacter hydrossis 1327 species 1 0 5153 Bacteroidetes Order II. Incertae sedis 0 7 order 1 1100069 100 family 6 0 Rhodothermaceae 5053 26 1 563843 1 29548 21 2 0 genus 2385 Rhodothermus Rhodothermus marinus 2364 species 0 1 29549 6 146918 1 genus 0 2 Salinibacter 904 898 Salinibacter ruber 0 1 species 146919 1738 no rank 0 1 1196022 species 0 1 Rhodothermaceae bacterium RA 1738 1779382 1 117743 199 0 149 class 260814 Flavobacteriia 1 200644 173 260615 Flavobacteriales 148 0 order 0 3 family 1699 Crocinitomicaceae 1 1853230 1 1698 Fluviicola 0 2 genus 1 332102 3 1695 Fluviicola taffensis 0 1 species 191579 2762318 22 0 family 43386 Ornithobacterium 2586 genus 0 2 2 1 28250 28251 0 1 species 2584 Ornithobacterium rhinotracheale Riemerella 3667 genus 2 0 2 1 34084 34085 1 0 species 3665 Riemerella anatipestifer Elizabethkingia 13367 genus 6 0 67 1 308865 1756150 Elizabethkingia genomosp. 4 1377 species 1 0 Elizabethkingia miricola 2656 species 1 0 172045 Elizabethkingia anophelis 5449 species 1 0 1117645 238 Elizabethkingia meningoseptica 2327 species 1 0 1756149 species 0 1 Elizabethkingia genomosp. 3 1491 2782232 10 0 no rank 22568 72 1 59732 genus 9 0 Chryseobacterium 20771 1 0 species 2080 Chryseobacterium glaciei 1685010 2593645 no rank 0 3 7506 2473 Chryseobacterium sp. IHB B 17019 1 0 species 1721091 2015076 3043 Chryseobacterium sp. T16E-39 0 1 species 878220 Chryseobacterium sp. StRB126 1990 species 1 0 253 Chryseobacterium indologenes 5425 species 1 0 1324352 2250 Chryseobacterium gallinarum 0 1 species 558152 1898 Chryseobacterium piperi 0 1 species 1265445 species 0 1 Chryseobacterium camelliae 1540 2782228 genus 1 0 1797 species 0 1 Chryseobacterium taklimakanense 1797 536441 434 1013 1 genus 0 2 Weeksella 1198 1014 0 1 species 764 Weeksella virosa 3285 no rank 0 3 313602 1940138 1 0 genus 1020 1415657 1 0 species 1020 Candidatus Walczuchella monophlebidarum 6 336809 1 Candidatus Sulcia 2265 genus 0 2 336810 1 0 species 2259 Candidatus Sulcia muelleri 954 0 2 family 1333713 1 267986 1 954 Owenweeksia 2 0 genus 253245 953 Owenweeksia hongkongensis 1 0 species 60 1 39782 family 0 10 Blattabacteriaceae 13295 genus 9 0 Blattabacterium 13235 182 1 34098 164514 Blattabacterium punctulatus 1856 species 1 0 2647581 9202 no rank 0 6 species 0 1 Blattabacterium sp. (Mastotermes darwiniensis) 1902 39768 1316444 species 1 0 Blattabacterium sp. (Nauphoeta cinerea) 1405 1186051 Blattabacterium sp. (Blaberus giganteus) 1373 species 0 1 Blattabacterium sp. (Periplaneta americana) 1488 species 0 1 367488 Blattabacterium sp. (Blattella germanica) 1422 species 0 1 624186 1612 Blattabacterium sp. (Blatta orientalis) 1 0 species 367806 Blattabacterium cuenoti 1995 species 1 0 1653831 0 105 family 196820 Flavobacteriaceae 1 49546 744 2 0 genus 1418 Aequorivita 153265 1 2 101385 1 0 species 1416 Aequorivita sublithincola 1 1 1204360 genus 2 0 Siansivirga 3137 762954 3136 Siansivirga zeaxanthinifaciens 0 1 species 5 0 genus 10784 Myroides 1 76831 103 2642485 5794 0 2 no rank 1 0 species 3213 Myroides sp. ZB35 1458492 1583100 Myroides sp. A21 2581 species 0 1 480520 2323 Myroides profundi 1 0 species 76832 1 0 species 2564 Myroides odoratimimus genus 4 0 Cellulophaga 10140 61 1 104264 3118 Cellulophaga algicola 1 0 species 59600 species 0 1 Cellulophaga lytica 3499 979 76594 3462 Cellulophaga baltica 0 1 species 1 111500 32 2906 Muricauda 3 0 genus 111501 1 0 species 1888 Muricauda ruestringensis 986 Muricauda lutaonensis 0 1 species 516051 336276 genus 0 1 2233 2615019 2233 0 1 no rank species 1 0 Olleya sp. Bg11-27 2233 2058135 10 1 291183 genus 4 0 Lacinutrix 11246 species 0 1 Lacinutrix venerupis 4319 1486034 2647285 0 2 no rank 6917 3221 Lacinutrix sp. Bg11-31 1 0 species 2057808 species 0 1 Lacinutrix sp. 5H-3-7-4 3696 983544 292691 1 11 5 0 genus 3296 Gramella 411153 1 0 species 1277 Gramella forsetii 1913577 654 Gramella sp. LPB0144 0 1 species species 0 1 Gramella flava 674 1486245 2126553 Gramella sp. SH35 680 species 0 1 14 1 363408 genus 5 0 Nonlabens 6273 0 1 species 1764 Nonlabens dokdonensis 328515 2 0 no rank 2819 2615035 0 1 species 1449 Nonlabens sp. MB-3u-79 2058134 0 1 species 1370 Nonlabens sp. MIC269 1476901 species 0 1 Nonlabens sediminis 1676 319236 1176327 629 0 1 genus no rank 1 0 629 2636237 2094025 species 0 1 Aureitalea sp. RR4-38 629 1649495 genus 1 0 3794 2622645 0 1 no rank 3794 species 0 1 Seonamhaeicola sp. S2-3 3794 1936081 7 1 104267 Tenacibaculum 14711 genus 5 0 584609 Tenacibaculum jejuense 4218 species 1 0 3156 Tenacibaculum dicentrarchi 1 0 species 669041 1850252 Tenacibaculum todarodis 4625 species 1 0 107401 0 1 species 2705 Tenacibaculum maritimum genus 0 2 Tamlana 3423 1 1 393005 3422 Tamlana sp. UJ94 1 0 species 2069432 1 237 55 0 9 genus 26158 Flavobacterium Flavobacterium gilvum 2587 species 0 1 1492737 96345 2075 Flavobacterium psychrophilum 1 0 species Flavobacterium crassostreae 2059 species 1 0 1763534 0 1 species 2041 Flavobacterium commune 1306519 312277 0 1 species 3926 Flavobacterium indicum 55197 2563 Flavobacterium branchiophilum 0 1 species 986 1 0 species 4888 Flavobacterium johnsoniae 996 species 0 1 Flavobacterium columnare 5964 1 1 286104 Winogradskyella 6266 genus 0 3 2615021 no rank 2 0 6265 754409 Winogradskyella sp. PG-2 4068 species 0 1 0 1 species 2197 Winogradskyella sp. J14-2 1936080 252306 548 genus 1 0 548 Robiginitalea biformata 1 0 species 252307 genus 0 2 Lutibacter 3360 1 358023 1 3359 Lutibacter profundi 1 0 species 1622118 genus 15 0 Capnocytophaga 18861 205 1 1016 1848904 2187 Capnocytophaga stomatis 1 0 species Capnocytophaga cynodegmi 1185 species 1 0 28189 6168 6 0 no rank 2640652 species 1 0 Capnocytophaga sp. oral taxon 864 876 1316593 1705617 species 1 0 Capnocytophaga sp. oral taxon 323 572 Capnocytophaga sp. oral taxon 878 1449 species 1 0 1316596 1945658 Capnocytophaga sp. H4358 1327 species 1 0 209053 species 0 1 Capnocytophaga sp. ChDC OS43 629 1945657 species 1 0 Capnocytophaga sp. H2931 1315 0 1 species 598 Capnocytophaga haemolytica 45243 28188 species 0 1 Capnocytophaga canimorsus 3638 species 0 1 Capnocytophaga leadbetteri 390 327575 1339 Capnocytophaga ochracea 0 1 species 1018 1017 880 Capnocytophaga gingivalis 1 0 species 1019 0 1 species 2271 Capnocytophaga sputigena 389486 0 1 genus 964 964 0 1 no rank 2648869 964 Sediminicola sp. YIK13 0 1 species 1453352 178469 876 1 0 genus species 1 0 Arenibacter algicola 876 616991 225842 genus 0 2 2790 2644710 2790 0 2 no rank 1 0 species 1906 Formosa sp. Hel3_A1_48 1336795 1 0 species 884 Formosa sp. Hel1_33_131 1336794 1787 1 0 genus 216431 Croceibacter atlanticus 1787 species 0 1 313588 0 2 no rank 5287 61432 1150389 1 0 species 4441 Flavobacteriaceae bacterium UJ101 Flavobacteriaceae bacterium 3519-10 846 species 0 1 531844 1 0 genus 2585 1518147 2585 Wenyingzhuangia fucanilytica 0 1 species 1790137 0 2 genus 2348 Flavivirga 1 1209327 1 1803846 2347 Flavivirga eckloniae 1 0 species 2 1 112040 genus 2 0 Zobellia 709 707 Zobellia galactanivorans 0 1 species 63186 13 1 326319 Dokdonia 3526 genus 0 4 2573 0 2 no rank 2615033 0 1 species 770 Dokdonia sp. MED134 313590 983548 Dokdonia sp. 4H-3-7-5 1803 species 0 1 326320 0 1 species 940 Dokdonia donghaensis Zunongwangia 1625 genus 2 0 1 1 417127 398743 1624 Zunongwangia profunda 0 1 species 2695 genus 0 1 83612 57029 species 1 0 Psychroflexus torquis 2695 genus 0 1 3280 2700084 1850246 3280 Lutibacter sp. LPB0138 1 0 species 1450 genus 0 1 143222 0 1 no rank 1450 2633436 1450 Salegentibacter sp. T436 1 0 species 1729720 0 2 genus 2893 Algibacter 1 261827 1 0 1 species 2892 Algibacter alginicilyticus 1736674 1 52959 28 0 6 genus 27804 Polaribacter 996801 0 1 species 5951 Polaribacter reichenbachii 3 0 no rank 16629 196858 313598 Polaribacter sp. MED152 3612 species 1 0 species 0 1 Polaribacter sp. ALD11 5808 2058137 Polaribacter sp. BM10 7209 species 1 0 1529069 1774273 species 1 0 Polaribacter vadi 5196 252356 1 8 0 5 genus 6274 Maribacter 2615042 0 3 no rank 5428 313603 species 1 0 Maribacter sp. HTCC2170 1133 1644130 Maribacter sp. 1_2014MBL_MicDiv 2243 species 1 0 1836467 Maribacter sp. T28 2052 species 0 1 Maribacter cobaltidurans 838 species 0 1 1178778 5 1 1755828 Ichthyobacteriaceae 1003 family 2 0 998 genus 0 1 1755829 998 Ichthyobacterium seriolicida 1 0 species 242600 456828 0 2 phylum 621 1 456826 1 0 2 genus 621 Candidatus Cloacimonas 456827 species 0 1 Candidatus Cloacimonas acidaminovorans 620 142182 4107 phylum 0 8 4107 Gemmatimonadetes 8 0 class 1 219685 18 0 7 order 4089 Gemmatimonadales 1 219686 72 1 219687 66 4017 Gemmatimonadaceae 6 0 family Gemmatirosa 2090 genus 2 0 22 1 1706036 Gemmatirosa kalamazoonesis 2068 species 0 1 861299 1861 Gemmatimonas 0 3 genus 1 173479 49 species 1 0 Gemmatimonas phototrophica 892 1379270 Gemmatimonas aurantiaca 920 species 0 1 173480 2782 5 0 phylum 65842 2782 Fibrobacteria 0 5 class 1 204430 2 1 1 218872 order 4 0 Fibrobacterales 2780 1 204431 2 2779 Fibrobacteraceae 3 0 family 2777 Fibrobacter 2 0 genus 1 832 6 833 2771 Fibrobacter succinogenes 0 1 species 2 1 57723 phylum 21 0 Acidobacteria 10634 class 0 3 Blastocatellia 1061 4 1 1562566 1 458032 3 0 2 genus 1057 Chloracidobacterium 458033 1 0 species 1054 Chloracidobacterium thermophilum 9571 Acidobacteriia 17 0 class 1 204432 76 75 1 204433 Acidobacteriales 7434 order 12 0 0 11 family 7359 Acidobacteriaceae 1 204434 100 genus 0 3 Granulicella 2181 48 1 940557 0 1 species 1071 Granulicella tundricola 940615 940614 1062 Granulicella mallensis 1 0 species 18 1 392733 genus 0 3 Terriglobus 2296 Terriglobus saanensis 973 species 0 1 870903 392734 species 1 0 Terriglobus roseus 1305 Candidatus Koribacter 1495 genus 0 2 22 1 658061 0 1 species 1473 Candidatus Koribacter versatilis 658062 0 2 genus 1287 Acidobacterium 33973 1 10 33075 1 0 species 1277 Acidobacterium capsulatum 4 0 order 2061 Solibacterales 1 332160 115 Solibacteraceae 1946 family 3 0 20 1 332161 1926 Candidatus Solibacter 0 2 genus 1 332162 16 0 1 species 1910 Candidatus Solibacter usitatus 332163 20961 phylum 0 25 200783 1 187857 17 20961 Aquificae 25 0 class 0 20 order 16148 Aquificales 1 32069 4 Hydrogenothermaceae 6962 family 0 6 3 1 224027 3 0 genus 5664 Sulfurihydrogenibium 1 212790 2 2619248 no rank 1 0 3241 436114 0 1 species 3241 Sulfurihydrogenibium sp. YO3AOP1 309806 species 0 1 Sulfurihydrogenibium azorense 2421 Persephonella 1295 genus 2 0 2 1 182899 Persephonella marina 1293 species 1 0 309805 0 1 no rank 492 90150 492 1 0 genus 412592 species 0 1 Thermosulfidibacter takaii 492 412593 family 12 0 Aquificaceae 8690 5 1 64898 620 genus 0 1 939 940 620 Hydrogenobacter thermophilus 0 1 species 2 0 genus 780 Aquifex 1 2713 1 779 Aquifex aeolicus 0 1 species 63363 6 0 genus 6197 Hydrogenobaculum 1 168657 77 6120 5 0 no rank 2622382 1 0 species 1188 Hydrogenobaculum sp. HO 547144 547143 0 1 species 1188 Hydrogenobaculum sp. 3684 species 0 1 Hydrogenobaculum sp. Y04AAS1 1368 380749 1188 Hydrogenobaculum sp. SHO 0 1 species 547145 547146 0 1 species 1188 Hydrogenobaculum sp. SN 75905 2 0 genus 1088 75906 Thermocrinis ruber 925 species 0 1 136094 Thermocrinis albus 163 species 1 0 1 1485951 16 4 0 order 4796 Desulfurobacteriales 1 558314 5 0 3 family 4780 Desulfurobacteriaceae 4148 1 0 genus 64159 Desulfurobacterium thermolithotrophum 4148 species 0 1 64160 genus 1 0 627 171868 228745 species 0 1 Thermovibrio ammonificans 627 6 0 phylum 5512 68297 17 1 203486 class 6 0 Dictyoglomia 5512 Dictyoglomales 5495 order 5 0 13 1 203487 family 4 0 Dictyoglomaceae 5482 2 1 203488 12 1 13 Dictyoglomus 5480 genus 3 0 513050 2233 Dictyoglomus turgidum 0 1 species 14 3235 Dictyoglomus thermophilum 1 0 species