members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 6239 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4639 4640160 0 17 1 4607525 2 superkingdom Bacteria 4316 5 phylum 68297 788 0 788 0 class 5 203486 203487 5 Dictyoglomales order 0 1 2 788 family 4 Dictyoglomaceae 203488 786 0 4 1 Dictyoglomus 3 genus 13 782 0 4 1 0 389 513050 species Dictyoglomus turgidum 1 1 Dictyoglomus thermophilum species 14 389 0 0 697 74152 6 phylum 641853 class 1 0 139 641854 1 order 0 139 641876 1 family 0 139 423604 1 genus 0 139 423605 1 Elusimicrobium minutum species 0 139 99260 1 no rank 0 202 species uncultured Termite group 1 bacterium 1 167965 202 0 0 356 447830 4 class 1 0 1 356 1783344 Endomicrobiales 4 order 355 0 3 family 1783343 genus Endomicrobium 3 1408194 355 0 2 1 175 0 1 Candidatus Endomicrobium trichonymphae species 1408204 1408281 1 Endomicrobium proavitum species 0 178 0 14847 32066 23 phylum 12 0 1 14847 203490 class Fusobacteriia 23 0 1 19 14835 203491 order Fusobacteriales 22 0 9 1 3463 1129771 family 10 Leptotrichiaceae 7 0 1 1893 32067 Leptotrichia 5 genus species 1 Leptotrichia buccalis 40542 467 0 1419 0 3 no rank 2633022 712368 1 Leptotrichia sp. oral taxon 498 species 0 472 496 0 1 Leptotrichia sp. oral taxon 847 species 1785996 Leptotrichia sp. oral taxon 212 1 species 712357 451 0 432 0 genus 1 168808 187101 species 1 Sneathia amnii 0 432 genus 2 Sebaldella 32068 477 0 1 1 826 Sebaldella termitidis 1 species 0 476 34104 1 genus 0 652 0 652 34105 1 Streptobacillus moniliformis species 11353 10 0 1 family Fusobacteriaceae 11 203492 469 0 genus 1 167639 167642 species 1 Ilyobacter polytropus 0 469 0 1 50 10874 848 genus 9 Fusobacterium 849 species Fusobacterium gonidiaformans 1 0 372 1583098 species Fusobacterium hwasookii 1 0 1175 0 674 861 1 Fusobacterium ulcerans species 0 249 859 species Fusobacterium necrophorum 1 0 2139 860 1 Fusobacterium periodonticum species 674 0 species Fusobacterium mortiferum 1 850 species 1 Fusobacterium varium 856 1297 0 851 1 Fusobacterium nucleatum species 0 4244 11342 0 phylum 55 203691 class Spirochaetia 55 203692 11342 0 26 1 0 17 1 2621 1643686 order Brachyspirales 7 5 0 1 2604 143786 family Brachyspiraceae 6 21 0 1 2599 29521 5 Brachyspira genus species Brachyspira intermedia 1 84377 557 0 159 1 Brachyspira hyodysenteriae species 0 613 1 Brachyspira pilosicoli species 52584 849 0 84378 species Brachyspira murdochii 1 0 559 20 0 1 6917 136 order Spirochaetales 38 1643685 Borreliaceae 17 family 0 23 1 4304 0 112 1 1837 64895 genus 8 Borreliella 29518 species Borreliella afzelii 1 0 277 0 173 62088 species Borreliella valaisiana 1 species 1 Borreliella garinii 29519 374 0 0 255 1674146 1 Borrelia mayonii species 239 0 1 Borreliella burgdorferi species 139 Borreliella bavariensis 1 species 664662 171 0 64897 1 Borreliella bissettii species 0 236 0 1 58 2444 138 genus 8 Borrelia 258 0 Borrelia anserina 1 species 143 0 215 141 Borrelia parkeri 1 species 0 345 44449 1 Borrelia recurrentis species 140 species Borrelia hermsii 1 0 179 47466 Borrelia miyamotoi 1 species 0 536 237 0 species 1 Borrelia turicatae 142 0 616 40834 species Borrelia duttonii 1 1 0 20 2593 137 20 Spirochaetaceae family 399320 genus 3 0 287 105 0 Sphaerochaeta pleomorpha 1 species 1131707 81 0 Sphaerochaeta globosa 1 species 1131703 species Sphaerochaeta coccoides 1 273376 101 0 0 347 1616789 genus 1 1307761 Salinispira pacifica 1 species 0 347 155 0 1 genus 1911556 0 155 55206 species 1 Sediminispirochaeta smaragdinae 157 Treponema 12 genus 0 1 7 1425 194 0 species 1 Treponema primitia 88058 95 0 species Treponema azotonutricium 1 150829 0 71 81028 Treponema brennaborense 1 species 167 Treponema succinifaciens 1 species 0 209 0 159 215591 Treponema caldarium 1 species species 1 Treponema denticola 158 139 0 53435 Treponema paraluiscuniculi 1 species 0 68 1 no rank 2638727 81 0 81 0 species 1 Treponema sp. OMZ 838 1539298 46 0 1 Treponema pallidum species 160 221027 species Treponema putidum 1 0 189 Treponema pedis 1 species 409322 167 0 0 359 146 genus 2 0 178 46355 1 Spirochaeta africana species 181 0 1 Spirochaeta thermophila species 154 0 1778 1643688 order 9 0 1 8 1778 170 family 9 Leptospiraceae 3 0 1 157 338321 Turneriella 2 genus 0 154 29510 species 1 Turneriella parva 171 genus 6 Leptospira 0 8 1 1613 0 312 172 species Leptospira biflexa 1 177 0 species 1 Leptospira santarosai 28183 species Leptospira alstonii 1 28452 180 0 0 676 173 Leptospira interrogans 1 species 1 Leptospira borgpetersenii species 174 260 0 549 0 phylum 10 508458 0 4 1 549 649775 class Synergistia 10 649776 order 9 Synergistales 1 0 2 545 family Synergistaceae 8 649777 543 0 4 1 0 110 49894 1 genus 0 110 97477 species Acetomicrobium mobile 1 0 114 508459 1 genus Cloacibacillus porcorum 1 species 1197717 114 0 111 0 1 4 Aminobacterium 2 genus 81466 81468 Aminobacterium colombiense 1 species 0 107 336260 genus 1 0 107 336261 species Thermovirga lienii 1 0 107 Thermanaerovibrio 2 genus 81461 97 1 0 2 species 1 Thermanaerovibrio acidaminovorans 81462 95 0 3462 0 28 phylum 200783 class 28 Aquificae 187857 3462 0 10 1 0 1 6 2843 32069 order Aquificales 21 0 140 90150 no rank 2 2 0 1 140 412592 2 Thermosulfidibacter genus 412593 1 Thermosulfidibacter takaii species 0 138 224027 family 6 Hydrogenothermaceae 5 0 1 1274 0 1 19 989 212790 Sulfurihydrogenibium 3 genus species 1 Sulfurihydrogenibium azorense 309806 456 0 2619248 1 no rank 0 514 514 0 species Sulfurihydrogenibium sp. YO3AOP1 1 436114 182899 genus Persephonella 2 0 1 2 280 0 278 309805 species 1 Persephonella marina 0 9 1 1423 64898 Aquificaceae 12 family 4 0 1 59 2713 2 Aquifex genus 1 Aquifex aeolicus species 63363 55 0 75905 genus 2 0 132 63 0 Thermocrinis albus 1 species 136094 0 69 75906 species 1 Thermocrinis ruber 0 77 939 1 genus 77 0 species Hydrogenobacter thermophilus 1 940 Hydrogenobaculum 6 genus 168657 1146 0 1 52 0 1094 2622382 no rank 5 species 1 Hydrogenobaculum sp. HO 547144 223 0 0 223 547146 species Hydrogenobaculum sp. SN 1 223 0 Hydrogenobaculum sp. 3684 1 species 547143 1 Hydrogenobaculum sp. SHO species 547145 223 0 species 1 Hydrogenobaculum sp. Y04AAS1 380749 202 0 1485951 order 6 Desulfurobacteriales 0 3 1 609 5 Desulfurobacteriaceae family 558314 606 0 12 1 64159 genus Desulfurobacterium 2 0 4 1 497 1 Desulfurobacterium thermolithotrophum species 64160 493 0 97 0 4 1 genus Thermovibrio 2 171868 species Thermovibrio ammonificans 1 228745 93 0 0 6018 200918 43 phylum 6018 0 1 13 class 43 Thermotogae 188708 9 0 1 3455 2419 Thermotogales 28 order family 17 Thermotogaceae 188709 1324 3 0 1 668 0 27 1 Thermotoga 11 genus 2335 4 no rank 2631113 223 0 0 54 126740 1 Thermotoga sp. RQ2 species 60 0 Thermotoga sp. RQ7 1 species 126738 0 44 1157947 species 1 Thermotoga sp. Cell2 1157948 1 Thermotoga sp. 2812B species 0 65 93929 1 Thermotoga petrophila species 0 39 2337 1 Thermotoga neapolitana species 0 72 140 0 Thermotoga profunda 1 species 1508420 55 0 1 Thermotoga caldifontis species 1508419 40 0 species Thermotoga naphthophila 1 93930 72 0 1 Thermotoga maritima species 2336 0 15 1 653 1643951 5 Pseudothermotoga genus 119394 species 1 Pseudothermotoga thermarum 0 171 68 0 1 Pseudothermotoga hypogea species 57487 0 200 177758 species Pseudothermotoga lettingae 1 38322 Pseudothermotoga elfii 1 species 0 199 3 0 1 2122 1643950 family 10 Fervidobacteriaceae 1562 0 1 17 5 Thermosipho genus 2420 448 0 1 Thermosipho africanus species 2421 2676525 no rank 2 0 686 345 0 species Thermosipho sp. 1070 1 1437364 species Thermosipho sp. 1063 1 1462747 341 0 46541 species Thermosipho melanesiensis 1 0 411 557 0 1 9 genus Fervidobacterium 4 2422 species 1 Fervidobacterium nodosum 2424 227 0 2423 species 1 Fervidobacterium islandicum 0 84 0 237 93466 Fervidobacterium pennivorans 1 species order Kosmotogales 6 1643946 554 0 3 1 551 0 family 5 1643948 651456 Kosmotoga 3 genus 0 1 4 387 651457 species 1 Kosmotoga olearia 0 166 species 1 Kosmotoga pacifica 1330330 217 0 genus 2 Mesotoga 1184396 164 0 4 1 1184387 1 Mesotoga prima species 0 160 1996 0 1 1 order 8 Petrotogales 1643947 0 1995 1643949 7 family 1242 14 0 1 genus 3 Marinitoga 160798 2640159 no rank 1 0 594 0 594 1545835 1 Marinitoga sp. 1137 species 0 634 149715 Marinitoga piezophila 1 species 0 2 1 287 28236 genus 2 Petrotoga 285 0 species 1 Petrotoga mobilis 69499 genus 2 Defluviitoga 1511648 466 0 1 3 463 0 species Defluviitoga tunisiensis 1 1006576 2138240 4 phylum 0 124 class Coprothermobacteria 4 2138243 124 3 0 1 1 0 4 121 2138246 order 3 Coprothermobacterales 117 0 2 family 2138247 genus Coprothermobacter 2 68335 117 0 2 1 1 Coprothermobacter proteolyticus species 35786 115 0 0 1678 57723 phylum 19 1562566 class 3 Blastocatellia 1 0 1 205 204 0 1 4 2 Chloracidobacterium genus 458032 0 200 458033 species Chloracidobacterium thermophilum 1 0 12 1 1473 204432 class Acidobacteriia 16 270 0 2 1 4 Solibacterales order 332160 268 0 4 1 family 3 Solibacteraceae 332161 0 1 1 264 332162 2 Candidatus Solibacter genus 263 0 Candidatus Solibacter usitatus 1 species 332163 0 8 1 1191 204433 order Acidobacteriales 11 1 0 21 1183 204434 Acidobacteriaceae 10 family 1 0 10 166 658061 genus 2 Candidatus Koribacter 0 156 658062 Candidatus Koribacter versatilis 1 species 0 403 940557 2 genus species 1 Granulicella mallensis 940614 151 0 940615 species Granulicella tundricola 1 0 252 0 7 1 355 392733 Terriglobus 3 genus 1 Terriglobus roseus species 392734 129 0 species 1 Terriglobus saanensis 870903 219 0 33973 genus Acidobacterium 2 0 2 1 238 Acidobacterium capsulatum 1 species 33075 236 0 1519 0 14 phylum 40117 203693 class 14 Nitrospira 1 0 17 1519 0 1 14 1502 189778 order 13 Nitrospirales 9 0 1 1488 189779 family 12 Nitrospiraceae 326 0 1 1 Leptospirillum 4 genus 179 species group 1 261385 92 0 0 92 1660083 1 Leptospirillum sp. Group II 'CF-1' species 655606 1 species group 0 131 131 0 species Leptospirillum ferrooxidans 1 180 species group 1 261386 102 0 178606 1 Leptospirillum ferriphilum species 0 102 640 0 2 1 genus 2 Thermodesulfovibrio 28261 28262 1 Thermodesulfovibrio yellowstonii species 0 638 0 4 1 513 1234 Nitrospira 5 genus 111 0 species Candidatus Nitrospira inopinata 1 1715989 Nitrospira defluvii 1 species 330214 127 0 Nitrospira japonica 1 species 1325564 108 0 163 0 Nitrospira moscoviensis 1 species 42253 2498710 clade 3 0 215 3 phylum 67814 215 0 3 class 693071 215 0 693072 3 order 0 215 Caldisericaceae 3 family 693073 215 0 1 1 214 0 1 1 Caldisericum 2 genus 693074 0 213 693075 species Caldisericum exile 1 200940 7 phylum 0 1311 6 0 1 1311 67799 7 Thermodesulfobacteria class 188710 order Thermodesulfobacteriales 6 1 0 8 1305 1297 3 0 1 5 Thermodesulfobacteriaceae family 188711 849 0 2 genus 1740 574 0 1 Thermodesulfobacterium geofontis species 1295609 1741 species 1 Thermodesulfobacterium commune 0 275 0 232 241192 genus 1 171695 species Thermodesulfatator indicus 1 0 232 1 genus 444090 213 0 213 0 species 1 Caldimicrobium thiodismutans 1653476 11460 0 clade 84 1783257 0 2094 204428 phylum 22 2094 0 4 1 Chlamydiia 22 class 204429 51291 order Chlamydiales 13 3 0 1 1446 809 12 family 0 1443 12 no rank 1113537 1443 0 1443 0 1 20 genus 12 Chlamydia 810 1 Chlamydia pneumoniae species 83558 134 0 species Chlamydia psittaci 1 83554 186 0 93 0 species 1 Chlamydia abortus 83555 127 0 Chlamydia felis 1 species 83556 147 0 Chlamydia caviae 1 species 83557 199 0 species Chlamydia pecorum 1 85991 Chlamydia muridarum 1 species 83560 94 0 species 1 Chlamydia suis 83559 68 0 0 106 813 1 Chlamydia trachomatis species 0 120 1457153 1 Chlamydia gallinacea species Chlamydia avium 1 species 1457141 149 0 1 0 1 644 1963360 order 8 Parachlamydiales 160 0 1 family 92712 34093 genus 1 0 160 83561 species 1 Simkania negevensis 0 160 92714 family 2 0 124 genus 2 Waddlia 71666 124 0 1 2 71667 Waddlia chondrophila 1 species 0 122 4 family 92713 359 0 282132 genus Candidatus Protochlamydia 2 0 1 1 144 1 Candidatus Protochlamydia naegleriophila species 389348 143 0 83551 2 Parachlamydia genus 0 1 4 215 211 0 species 1 Parachlamydia acanthamoebae 83552 298 0 phylum 4 134625 0 298 1921781 class 4 298 0 2 1 order Kiritimatiellales 4 1921782 1921783 Kiritimatiellaceae 3 family 0 4 1 296 Kiritimatiella 2 genus 1921784 292 1 0 1 1307763 species 1 Kiritimatiella glycovorans 0 291 22 phylum 74201 2908 0 4 class 1955630 349 0 349 0 1 1 4 Methylacidiphilales order 717963 1 0 1 348 717964 family 3 Methylacidiphilaceae 347 0 2 genus 511745 0 242 591154 species Methylacidiphilum fumariolicum 1 105 0 species Methylacidiphilum infernorum 1 511746 3 class 203494 412 0 0 412 48461 order 3 family 3 1647988 412 0 0 1 2 412 239934 genus 3 Akkermansia 0 216 1679444 species Akkermansia glycaniphila 1 1 Akkermansia muciniphila species 239935 194 0 524 0 2 no rank 417295 0 247 1637999 Verrucomicrobia bacterium IMCC26134 1 species 0 277 2026799 Verrucomicrobia bacterium 1 species 0 74 134549 2 class 0 1 5 74 134550 2 Candidatus Xiphinematobacter genus 2648876 no rank 1 0 69 1704307 species 1 Candidatus Xiphinematobacter sp. Idaho Grape 0 69 1549 0 1 5 class Opitutae 11 414999 415001 order 4 Puniceicoccales 0 3 1 398 415002 family 3 Puniceicoccaceae 0 1 1 395 genus Coraliomargarita 2 442430 394 0 1 1 species Coraliomargarita akajimensis 1 395922 393 0 415000 Opitutales 6 order 0 14 1 1146 134623 family Opitutaceae 5 0 12 1 1132 0 360 178440 genus 1 360 0 species Opitutus terrae 1 107709 278955 1 no rank 0 467 467 0 species 1 Opitutaceae bacterium TAV5 794903 293 0 1 2 genus 2 Lacunisphaera 1961799 0 291 1838286 species 1 Lacunisphaera limnophila 220 0 2 phylum 256845 Lentisphaeria 2 class 1313211 220 0 2 1 order 1 278082 218 0 0 218 1674876 no rank 1 0 218 2094242 Victivallales bacterium CCUG 44730 1 species phylum 34 Planctomycetes 203682 5940 2 0 1 Phycisphaerae 6 class 666505 785 0 5 1 0 1 2 511 666506 order Phycisphaerales 3 0 1 1 509 666507 family 2 Phycisphaeraceae 508 0 1 genus 666508 508 0 Phycisphaera mikurensis 1 species 547188 2483366 2 order 0 269 269 0 2 family 2483367 2483368 genus 2 0 269 126 0 species Phycisphaerae bacterium L21-RPul-D3 1 1940790 1941349 species Phycisphaerae bacterium ST-PulAB-D4 1 0 143 2 class 2517206 1223 0 Candidatus Brocadiales 2 order 1127829 1223 0 6 1 family 1 1127830 1217 0 1217 0 1 genus 380738 0 1217 174633 species Candidatus Kuenenia stuttgartiensis 1 3930 0 13 1 class Planctomycetia 25 203683 5 order 2691354 819 0 2691358 2 family 0 141 1676125 genus 2 Thermogutta 0 1 1 141 species 1 Thermogutta terrifontis 1331910 140 0 2691357 3 family 0 678 genus 1 123 335 0 335 0 species Pirellula staleyi 1 125 Rhodopirellula 2 genus 265488 343 0 1 3 0 340 265606 Rhodopirellula baltica 1 species order 10 Planctomycetales 112 1599 33 0 1 126 Planctomycetaceae 9 family 0 1 10 1566 1649490 genus 2 Rubinisphaera 2 0 1 243 species Rubinisphaera brasiliensis 1 119 241 0 1 0 1 305 1936111 Fuerstia 2 genus 0 304 1891926 species Fuerstia marisgermanicae 1 Planctomyces 3 genus 118 852 0 3 1 0 849 2648843 2 no rank species Planctomyces sp. SH-PL62 1 1636152 510 0 0 339 1632864 Planctomyces sp. SH-PL14 1 species 156 0 1 genus 1649480 species Planctopirus limnophila 1 120 156 0 2691355 2 order 0 402 0 402 1914233 2 family 0 1 6 402 113 2 Gemmata genus 396 0 no rank 1 2622970 0 396 1630693 species 1 Gemmata sp. SH-PL17 0 1097 2691356 7 order 1097 0 11 1 family 7 Isosphaeraceae 1763524 127 Isosphaera 2 genus 0 3 1 253 0 250 128 Isosphaera pallida 1 species 0 1 2 472 1763521 Paludisphaera 2 genus 1387353 Paludisphaera borealis 1 species 0 470 Singulisphaera 2 genus 466152 361 0 3 1 358 0 species Singulisphaera acidiphila 1 466153 4 phylum 200938 176 0 4 Chrysiogenetes class 118001 176 1 0 2 order Chrysiogenales 3 189769 174 0 1 2 189770 2 family 0 172 0 1 2 172 393029 Desulfurispirillum 2 genus 1 Desulfurispirillum indicum species 936456 170 0 2323 3 no rank 0 386 0 386 1783234 clade 3 95901 clade 2 0 340 0 340 2497643 class 2 2 order 2497644 340 0 0 340 2497645 2 family genus 2 Candidatus Babela 1551504 340 1 0 1 339 0 Candidatus Babela massiliensis 1 species 673862 phylum 1 95818 46 0 1895827 1 no rank 0 46 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 species 2056494 46 0 0 146 1 642645 1224 2006 Proteobacteria phylum 68525 subphylum 194 0 51014 class 70 Epsilonproteobacteria 29547 24971 0 1 30 235899 5 Nautiliales order 1 0 3 552 390 0 2 1 3 Nautiliaceae family 224467 Nautilia 2 genus 191291 388 0 1 1 species 1 Nautilia profundicola 244787 387 0 2795691 family 1 0 159 0 159 269258 1 genus 2624044 no rank 1 0 159 387092 species 1 Nitratiruptor sp. SB155-2 0 159 24389 0 50 1 order 64 Campylobacterales 213849 2771472 family 4 0 538 265570 genus Sulfurovum 3 0 4 1 362 1 Sulfurovum lithotrophicum species 206403 157 0 2646778 no rank 1 0 201 201 0 Sulfurovum sp. NBC37-1 1 species 387093 0 176 269260 genus 1 269261 species 1 Nitratifractor salsuginis 0 176 72294 family Campylobacteraceae 41 35 0 1 19673 194 genus Campylobacter 26 0 1 75 12631 1 Campylobacter iguaniorum species 1244531 309 0 0 322 76517 species 1 Campylobacter hominis 544 0 species Campylobacter subantarcticus 1 497724 0 1539 2593542 no rank 4 Campylobacter sp. RM6137 1 species 1660073 269 0 0 544 1500960 species 1 Campylobacter sp. RM16704 1660076 species 1 Campylobacter sp. RM12175 0 362 0 364 1660074 species Campylobacter sp. RM8964 1 597 0 species 1 Campylobacter ureolyticus 827 76 0 species Campylobacter gracilis 1 824 198 Campylobacter hyointestinalis 1 species 0 380 0 470 196 Campylobacter fetus 1 species species Campylobacter jejuni 1 197 1190 0 0 313 199 1 Campylobacter concisus species 0 1408 201 species 1 Campylobacter lari 0 858 206 species 1 Campylobacter sputorum 0 285 522485 Campylobacter avium 1 species 1 Campylobacter insulaenigrae species 260714 591 0 0 412 374106 species Campylobacter cuniculorum 1 species 1 Campylobacter helveticus 28898 277 0 species Campylobacter lanienae 1 75658 224 0 771 0 Campylobacter pinnipediorum 1 species 1965231 200 1 Campylobacter curvus species 0 50 195 1 Campylobacter coli species 0 936 571 0 Campylobacter volucris 1 species 1031542 0 433 488546 1 Campylobacter peloridis species 28 0 1 1603 57665 genus 9 Sulfurospirillum 366522 species 1 Sulfurospirillum cavolei 0 97 189 0 Sulfurospirillum halorespirans 1 species 194424 species 1 Sulfurospirillum deleyianum 65553 220 0 0 198 66821 Sulfurospirillum multivorans 1 species Sulfurospirillum barnesii 1 species 44674 171 0 2618290 3 no rank 0 700 1581011 species Sulfurospirillum sp. UCH001 1 0 291 0 202 220622 1 Sulfurospirillum sp. JPD-1 species species Sulfurospirillum sp. SL2-1 1 1986224 207 0 0 5404 2321108 5 no rank 2321207 no rank 1 0 1402 Arcobacter sp. L 1 species 944547 1402 0 3 Arcobacter genus 28196 2736 0 1 29 species 1 Arcobacter nitrofigilis 28199 1020 0 0 1687 28197 Arcobacter butzleri 1 species 0 1266 2321187 1 genus 1850254 species Arcobacter sp. LPB0137 1 0 1266 0 809 2771471 family 4 709 0 genus 2 202746 Sulfurimonas autotrophica 1 species 202747 320 0 0 389 39766 Sulfurimonas denitrificans 1 species 0 1 1 100 286130 genus 2 Sulfuricurvum 99 0 1 Sulfuricurvum kujiense species 148813 family Helicobacteraceae 14 72293 3319 0 7 1 Helicobacter 12 genus 209 3232 0 7 1 312 0 Helicobacter cetorum 1 species 138563 species Helicobacter typhlonius 1 76936 154 0 1 Helicobacter mustelae species 217 122 0 210 Helicobacter pylori 1 species 0 1513 species 1 Helicobacter himalayensis 1591088 147 0 2593540 1 no rank 0 127 222136 species Helicobacter sp. MIT 01-6242 1 0 127 0 216 37372 Helicobacter bilis 1 species 0 255 32025 1 Helicobacter hepaticus species 172 0 species Helicobacter cinaedi 1 213 78 0 species Helicobacter felis 1 214 129 0 species Helicobacter acinonychis 1 212 80 0 genus 1 843 species 1 Wolinella succinogenes 844 80 0 class 124 Deltaproteobacteria 28221 26043 0 1 45 453227 3 order 0 236 236 0 1 1 3 Desulfarculaceae family 453228 genus 2 Desulfarculus 453229 235 1 0 3 0 232 453230 Desulfarculus baarsii 1 species 0 1 107 13837 29 38 Myxococcales order 26 suborder 80811 7977 0 3 Vulgatibacteraceae family 1524213 377 1 0 1 genus 2 Vulgatibacter 1524214 376 0 7 1 Vulgatibacter incomptus 1 species 1391653 369 0 3642 0 19 1 family 9 Myxococcaceae 31 5 Myxococcus genus 32 2571 0 86 1 species Myxococcus fulvus 1 33 1076 0 533 0 1 Myxococcus stipitatus species 83455 0 402 34 species 1 Myxococcus xanthus species Myxococcus hansupus 1 1297742 474 0 0 11 1 1052 83461 3 Corallococcus genus 460 0 species Myxococcus macrosporus 1 35 581 0 1 Corallococcus coralloides species 184914 1524215 family 5 Anaeromyxobacteraceae 0 5 1 1583 4 Anaeromyxobacter genus 161492 1578 1 0 23 0 874 2620896 2 no rank 456 0 1 Anaeromyxobacter sp. Fw109-5 species 404589 0 418 447217 1 Anaeromyxobacter sp. K species species 1 Anaeromyxobacter dehalogenans 161493 681 0 0 1 35 2375 39 9 Archangiaceae family 413 0 1 5 genus 2 Stigmatella 40 species Stigmatella aurantiaca 1 41 408 0 2 Melittangium genus 44 436 9 0 1 83453 species 1 Melittangium boletus 0 427 0 1 3 930 47 2 Archangium genus 927 0 species Archangium gephyra 1 48 42 genus 2 Cystobacter 0 9 1 561 43 Cystobacter fuscus 1 species 0 552 80812 8 suborder 0 4668 3 Sandaracinaceae family 1055686 1003 0 1 7 996 1 0 3 2 Sandaracinus genus 1055688 927083 species 1 Sandaracinus amylolyticus 0 993 5 Polyangiaceae family 49 3665 19 0 1 10 0 1 2863 39643 genus Sorangium 2 56 Sorangium cellulosum 1 species 0 2853 2 Chondromyces genus 50 783 0 1 1 782 0 species Chondromyces crocatus 1 52 suborder 3 224462 1085 0 1085 0 7 1 3 Kofleriaceae family 224464 1078 0 11 1 Haliangium 2 genus 162027 80816 Haliangium ochraceum 1 species 0 1067 1 0 33 2894 213118 order 18 Desulfobacterales 928 0 19 1 9 Desulfobulbaceae family 213121 178 0 1 4 2 Desulfurivibrio genus 427922 427923 species 1 Desulfurivibrio alkaliphilus 0 174 287 0 5 1 genus 2 Desulfotalea 109168 84980 1 Desulfotalea psychrophila species 0 282 289 4 0 1 genus 2 Desulfocapsa 53318 65555 1 Desulfocapsa sulfexigens species 0 285 893 2 Desulfobulbus genus 0 1 1 155 species 1 Desulfobulbus sp. ORNL 1986146 154 0 8 Desulfobacteraceae family 213119 1933 0 10 1 0 11 1 455 896 3 Desulfococcus genus 897 Desulfococcus multivorans 1 species 0 205 species 1 Desulfococcus oleovorans 181663 239 0 genus 1 218207 646 0 Desulfatibacillum alkenivorans 1 species 259354 646 0 1 genus 2295 220 0 species Desulfobacterium autotrophicum 1 2296 220 0 602 0 1 1 2 Desulfobacula genus 28222 species Desulfobacula toluolica 1 28223 601 0 order 5 Desulfurellales 213113 826 0 1 2 117942 family 4 Desulfurellaceae 0 2 1 824 0 2 1 553 33001 2 Desulfurella genus 33002 species Desulfurella acetivorans 1 0 551 1 genus 84404 269 0 0 269 84405 species 1 Hippea maritima order Desulfuromonadales 23 69541 4144 55 0 1 13 Geobacteraceae family 213422 2753 0 20 1 2512 0 40 1 11 Geobacter genus 28231 0 536 351604 1 Geobacter uraniireducens species 182 0 species Geobacter anodireducens 1 1340425 185 0 1 Geobacter pickeringii species 345632 0 153 313985 species 1 Geobacter lovleyi species Geobacter bemidjiensis 1 225194 187 0 0 157 35554 species Geobacter sulfurreducens 1 475 0 2 no rank 2627627 266 0 Geobacter sp. M18 1 species 443143 443144 Geobacter sp. M21 1 species 0 209 1203471 1 Geobacter daltonii species 0 185 412 0 Geobacter metallireducens 1 species 28232 221 0 1 genus 392332 221 0 Geoalkalibacter subterraneus 1 species 483547 0 10 1 1336 213421 9 Desulfuromonadaceae family 890 genus Desulfuromonas 3 0 1 9 579 1603606 1 Desulfuromonas soudanensis species 0 342 no rank 1 2614637 228 0 species 1 Desulfuromonas sp. DDH964 1823759 228 0 Pelobacter 5 genus 18 747 0 1 11 0 199 2620299 no rank 1 species Pelobacter sp. SFB93 1 1842532 199 0 species 1 Pelobacter carbinolicus 19 146 0 0 191 29543 species Pelobacter propionicus 1 29542 1 Pelobacter acetylenicus species 0 200 213462 order Syntrophobacterales 11 0 2 1 669 213468 family Syntrophaceae 7 0 9 1 490 60892 2 Desulfobacca genus 0 1 1 102 Desulfobacca acetoxidans 1 species 60893 101 0 0 1 2 195 43773 2 Syntrophus genus 193 0 species Syntrophus aciditrophicus 1 316277 genus 2 Desulfomonile 2357 184 0 1 3 181 0 species Desulfomonile tiedjei 1 2358 213465 family 3 Syntrophobacteraceae 0 2 1 177 175 0 1 6 genus Syntrophobacter 2 29526 0 169 119484 1 Syntrophobacter fumaroxidans species 25 Desulfovibrionales order 213115 3392 41 0 1 family 3 Desulfohalobiaceae 213117 112 1 0 4 45662 Desulfohalobium 2 genus 1 0 3 108 105 0 Desulfohalobium retbaense 1 species 45663 300 0 family 3 213116 300 0 1 14 genus Desulfomicrobium 3 898 899 Desulfomicrobium baculatum 1 species 0 162 132132 1 Desulfomicrobium orale species 0 124 194924 family Desulfovibrionaceae 18 16 0 1 2939 0 285 2794998 1 genus 285 0 Desulfovibrio salexigens 1 species 880 genus 2 Lawsonia 41707 444 0 5 1 species Lawsonia intracellularis 1 29546 439 0 0 1 7 479 2035811 genus Pseudodesulfovibrio 4 species Pseudodesulfovibrio profundus 1 57320 131 0 0 172 1716143 Pseudodesulfovibrio indicus 1 species 169 0 species 1 Pseudodesulfovibrio aespoeensis 182210 1 genus 2582840 151 0 151 0 species 1 Desulfovibrio africanus 873 1564 0 13 1 genus Desulfovibrio 9 872 0 158 58180 1 Desulfovibrio alaskensis species 101 0 species Desulfovibrio fairfieldensis 1 44742 0 470 881 species 1 Desulfovibrio vulgaris 116 0 species Desulfovibrio piger 1 901 876 Desulfovibrio desulfuricans 1 species 0 300 no rank 1 2593640 81 0 631220 species 1 Desulfovibrio sp. G11 0 81 251 0 species Desulfovibrio magneticus 1 184917 1725232 Candidatus Desulfovibrio trichonymphae 1 species 0 74 class 4 580370 282 0 order Mariprofundales 4 580371 282 0 2 1 family 3 Mariprofundaceae 580372 280 0 1 1 279 0 2 genus 377315 0 148 1921086 species Mariprofundus aestuarium 1 1921087 species 1 Mariprofundus ferrinatatus 0 131 class 888 Gammaproteobacteria 1236 289766 477 0 1 135625 Pasteurellales 31 order 0 9 1 6750 0 43 1 6741 712 family Pasteurellaceae 30 697331 genus Basfia 2 1 0 1 161 160 0 species [Mannheimia] succiniciproducens 1 157673 Actinobacillus 5 genus 713 717 0 6 1 species 1 Actinobacillus succinogenes 67854 135 0 262 0 1 Actinobacillus pleuropneumoniae species 715 718 Actinobacillus equuli 1 species 0 165 149 0 species Actinobacillus suis 1 716 2201 0 1 17 genus Haemophilus 6 724 727 species 1 Haemophilus influenzae 0 1118 730 [Haemophilus] ducreyi 1 species 0 435 0 208 249188 species Haemophilus pittmaniae 1 729 1 Haemophilus parainfluenzae species 0 235 188 0 no rank 1 2609962 712310 species 1 Haemophilus sp. oral taxon 036 0 188 380 0 1 1 genus Glaesserella 2 2094023 379 0 Glaesserella parasuis 1 species 738 genus 1 476528 266 0 species 1 Bibersteinia trehalosi 47735 266 0 416916 Aggregatibacter 3 genus 0 1 1 444 227 0 species 1 Aggregatibacter actinomycetemcomitans 714 732 1 Aggregatibacter aphrophilus species 0 216 Pasteurella 3 genus 745 1159 0 1 8 335 0 species Pasteurella dagmatis 1 754 0 816 747 species 1 Pasteurella multocida 4 Mannheimia genus 75984 719 1 0 7 0 219 75985 Mannheimia haemolytica 1 species 0 203 2645054 no rank 1 203 0 1 Mannheimia sp. USDA-ARS-USMARC-1261 species 1432056 85404 1 Mannheimia varigena species 0 290 398 0 1 genus 214906 731 species Histophilus somni 1 0 398 253 0 2 1 2 Gallibacterium genus 155493 251 0 species 1 Gallibacterium anatis 750 135614 53 Xanthomonadales order 1 0 106 18633 0 25 1 2147 1775411 14 Rhodanobacteraceae family 1 genus 2233801 216 0 species Xanthomonadales bacterium D13 1 2021234 216 0 5 0 1 217 242605 genus 2 Luteibacter 212 0 1 Luteibacter rhizovicinus species 242606 Rhodanobacter 2 genus 75309 351 0 1 1 350 0 species Rhodanobacter denitrificans 1 666685 0 23 1 760 231454 genus 4 Dyella 254 0 species Dyella japonica 1 231455 1379159 1 Dyella jiangningensis species 0 217 0 266 445710 species Dyella thiooxydans 1 323413 genus 2 Dokdonella 5 0 1 344 339 0 species 1 Dokdonella koreensis 323415 genus Frateuria 2 70411 234 2 0 1 0 232 81475 Frateuria aurantia 1 species 32033 family 38 Xanthomonadaceae 0 135 1 16380 genus 1 2370 998 0 2371 species 1 Xylella fastidiosa 0 998 3 Pseudoxanthomonas genus 83618 766 0 8 1 537 0 Pseudoxanthomonas suwonensis 1 species 314722 1 Pseudoxanthomonas spadix species 415229 221 0 0 19 1 2454 68 genus 5 Lysobacter 1 Lysobacter enzymogenes species 69 367 0 741 0 1 Lysobacter capsici species 435897 0 398 262324 Lysobacter gummosus 1 species species Lysobacter antibioticus 1 84531 929 0 338 genus 17 Xanthomonas 0 186 1 8018 1985254 species Xanthomonas phaseoli 1 0 175 1 Xanthomonas translucens species 343 641 0 0 220 456327 species Xanthomonas euvesicatoria 1 347 species Xanthomonas oryzae 1 0 1659 Xanthomonas albilineans 1 species 29447 180 0 Xanthomonas hortorum 1 species 56454 206 0 175 0 Xanthomonas perforans 1 species 442694 species group 2 643453 1865 0 1479 0 Xanthomonas citri 1 species 346 species Xanthomonas fuscans 1 366648 386 0 158 0 1 Xanthomonas vasicola species 56459 339 Xanthomonas campestris 1 species 0 1222 181 0 1 Xanthomonas alfalfae species 366650 0 172 53413 Xanthomonas axonopodis 1 species 0 352 48664 species Xanthomonas fragariae 1 species Xanthomonas sacchari 1 56458 279 0 56460 species Xanthomonas vesicatoria 1 0 347 genus 2 Luteimonas 83614 196 0 3 1 0 193 2006110 species 1 Luteimonas sp. 100111 9 Stenotrophomonas genus 40323 3813 70 0 1 995085 species group 1 0 1841 1841 0 Stenotrophomonas maltophilia 1 species 40324 Stenotrophomonas nitritireducens 1 species 83617 239 0 128780 1 Stenotrophomonas acidaminiphila species 0 415 species 1 Stenotrophomonas rhizophila 216778 207 0 196198 no rank 4 0 1041 2005046 1 Stenotrophomonas sp. WZN-1 species 0 288 0 304 1827305 Stenotrophomonas sp. MYb57 1 species 1904944 Stenotrophomonas sp. LM091 1 species 0 203 1793721 species Stenotrophomonas sp. KCTC 12332 1 0 246 226 0 3 1 order 4 Nevskiales 1775403 2689614 family 2 0 218 469322 Steroidobacter 2 genus 13 0 1 218 1 Steroidobacter denitrificans species 465721 205 0 568386 1 Sinobacteraceae family 0 5 2 no rank 33811 525 0 273 0 1 gamma proteobacterium HdN1 species 83406 1 endosymbiont of unidentified scaly snail isolate Monju species 1248727 252 0 14392 0 17 1 35 Thiotrichales order 72273 135617 family Thiotrichaceae 5 13 0 1 913 0 3 1 508 1021 genus Beggiatoa 2 0 505 288004 1 Beggiatoa leptomitoformis species 40751 Thioploca 2 genus 0 1 1 392 0 391 40754 species Thioploca ingrica 1 3119 0 19 1 Piscirickettsiaceae 14 family 135616 1 0 1 605 1237 Piscirickettsia 2 genus 1238 species 1 Piscirickettsia salmonis 0 604 214 0 genus 1 28884 Hydrogenovibrio crunogenus 1 species 39765 214 0 34067 4 Cycloclasticus genus 0 41 1 1294 801 0 no rank 2 2621467 385025 species 1 Cycloclasticus sp. P1 0 391 0 410 728003 species 1 Cycloclasticus sp. PY97N 452 0 1 Cycloclasticus zancles species 1329899 0 15 1 622 40222 Methylophaga 3 genus species Methylophaga nitratireducenticrescens 1 754476 331 0 Methylophaga frappieri 1 species 754477 276 0 933 genus 3 Thiomicrospira 0 4 1 365 species Thiomicrospira cyclica 1 147268 178 0 Thiomicrospira aerophila 1 species 92245 183 0 34064 family Francisellaceae 15 16 0 1 10343 502 0 1 1 genus 2 Allofrancisella 1869285 0 501 594679 Allofrancisella guangzhouensis 1 species 262 genus 12 Francisella 1 0 82 9825 1942 0 species 1 Francisella halioticida 549298 species Francisella persica 1 954 498 0 573570 Francisella sp. TX077310 1 species 0 830 species Francisella sp. CA97-1460 1 1542390 649 0 657445 species 1 Francisella noatunensis 0 872 0 521 622488 species Francisella hispaniensis 1 2610885 2 no rank 0 984 1 Francisella sp. FSC1006 species 1547445 532 0 475375 species Francisella sp. MA067296 1 0 452 Francisella philomiragia 1 species 28110 1326 0 Francisella tularensis 1 species 263 1633 0 488 0 species 1 Francisella sp. TX077308 573569 28 Cellvibrionales order 1706369 5977 0 35 1 0 19 1 1210 1706375 family Spongiibacteraceae 6 Spongiibacter 2 genus 630749 340 5 0 1 2631504 1 no rank 0 335 0 335 1620392 species Spongiibacter sp. IMCC21906 1 511 1 0 8 genus Oceanicoccus 2 1084558 716816 1 Oceanicoccus sagamiensis species 0 503 1434050 genus 1 0 340 340 0 1 Zhongshania aliphaticivorans species 1470434 6 0 1 1380 1706372 4 Halieaceae family genus Halioglobus 3 1217416 1374 27 0 1 Halioglobus pacificus 1 species 930806 553 0 0 794 930805 species Halioglobus japonicus 1 1035 0 1 5 Microbulbiferaceae 5 family 1706373 1030 0 29 1 genus Microbulbifer 4 48073 252514 1 Microbulbifer thermotolerans species 0 346 0 277 260552 1 Microbulbifer agarilyticus species 0 378 1769779 species Microbulbifer aggregans 1 Cellvibrionaceae 12 family 1706371 2317 0 26 1 529 0 1 1 genus Agarilytica 2 2036021 0 528 1737490 species 1 Agarilytica rhodophyticola 301 0 5 1 Saccharophagus 2 genus 316625 86304 species 1 Saccharophagus degradans 0 296 4 Cellvibrio genus 10 859 0 5 1 0 565 2624793 no rank 2 1987723 1 Cellvibrio sp. PSBB006 species 0 293 Cellvibrio sp. PSBB023 1 species 1945512 272 0 289 0 Cellvibrio japonicus 1 species 155077 0 265 447467 1 genus 447471 species Simiduia agarivorans 1 0 265 337 1 0 1 genus 2 Teredinibacter 2425 0 336 2426 1 Teredinibacter turnerae species 1 0 61 26129 135619 Oceanospirillales 70 order 28256 Halomonadaceae 30 family 47 0 1 6765 1 0 13 529 504090 genus Kushneria 3 species 1 Kushneria konosiri 698828 289 0 227 0 species Kushneria marisflavi 1 157779 0 5 1 330 404432 genus 2 Salinicola Salinicola tamaricis 1 species 1771309 325 0 42054 Chromohalobacter 2 genus 0 1 3 294 158080 1 Chromohalobacter salexigens species 0 291 376488 1 genus 0 296 0 296 376489 1 Halotalea alkalilenta species 2 Cobetia genus 204286 323 0 1 5 0 318 28258 Cobetia marina 1 species genus 15 Halomonas 2745 4010 1 0 59 2609666 8 no rank 0 2002 0 238 1971364 Halomonas sp. GT 1 species 1883416 species Halomonas sp. 1513 1 0 343 234 0 1 Halomonas sp. 'Soap Lake #6' species 1949203 219 0 species 1 Halomonas sp. KO116 1504981 1962264 species 1 Halomonas sp. 'Soap Lake #7' 0 232 Halomonas sp. GFAJ-1 1 species 1118153 202 0 1610576 1 Halomonas sp. R57-5 species 0 259 2136172 Halomonas sp. SF2003 1 species 0 275 290 0 1 Halomonas huangheensis species 1178482 0 490 475662 Halomonas beimenensis 1 species species 1 Halomonas campaniensis 213554 213 0 Halomonas hydrothermalis 1 species 115561 308 0 1 Halomonas chromatireducens species 507626 293 0 1897729 1 Halomonas aestuarii species 0 355 4 no rank 114403 936 0 0 1 1 452 235572 2 Candidatus Portiera genus 451 0 1 Candidatus Portiera aleyrodidarum species 91844 343 0 1 genus 1495768 0 343 1495769 species 1 Candidatus Evansia muelleri 141 0 genus 1 114185 0 141 114186 1 Candidatus Carsonella ruddii species 1920240 6 Kangiellaceae family 0 3 1 1033 261963 genus 5 Kangiella 0 1 19 1030 0 242 914150 1 Kangiella geojedonensis species 1561924 Kangiella profundi 1 species 0 230 0 289 261964 Kangiella koreensis 1 species 0 250 1144748 species 1 Kangiella sediminilitoris 1 0 13 14257 224372 9 Alcanivoracaceae family genus Alcanivorax 6 59753 13897 0 1 60 0 644 1306787 species Alcanivorax pacificus 1 no rank 1 2638842 5628 0 5628 0 1 Alcanivorax sp. NBRC 101098 species 1113728 59754 Alcanivorax borkumensis 1 species 0 5792 844 0 species Alcanivorax dieselolei 1 285091 1094342 species 1 Alcanivorax xenomutans 0 929 2025617 genus Ketobacter 2 0 1 9 347 0 338 1917421 species Ketobacter alkanivorans 1 426 0 15 1 family 3 Oleiphilaceae 191033 411 0 1 3 Oleiphilus 2 genus 141450 Oleiphilus messinensis 1 species 141451 408 0 255527 5 Saccharospirillaceae family 2 0 1 687 0 1 9 371 1445504 genus Gynuella 2 0 362 1445505 species Gynuella sunshinyii 1 0 1 3 314 230494 genus Reinekea 2 Reinekea forsetii 1 species 1336806 311 0 family Oceanospirillaceae 13 135620 2558 14 0 1 0 1 4 391 187492 genus Thalassolituus 2 0 387 187493 species 1 Thalassolituus oleivorans 1065 1 0 3 4 Marinomonas genus 28253 no rank 1 196814 455 0 400668 1 Marinomonas sp. MWYL1 species 0 455 318 0 species 1 Marinomonas posidonica 936476 119864 species Marinomonas mediterranea 1 0 289 genus Bacterioplanes 2 1537406 327 3 0 1 324 0 1 Bacterioplanes sanyensis species 1249553 464 1 0 3 2 Marinobacterium genus 48075 461 0 1 Marinobacterium aestuarii species 1821621 188907 2 Oleispira genus 0 1 1 297 0 296 188908 species Oleispira antarctica 1 2 0 1 342 224379 3 Hahellaceae family 10 0 1 340 158481 Hahella 2 genus 158327 species 1 Hahella chejuensis 0 330 66 0 1 8371 135613 order Chromatiales 50 3 Granulosicoccaceae family 449719 464 0 2 1 genus 2 Granulosicoccus 437504 462 0 1 14 437505 species Granulosicoccus antarcticus 1 0 448 255526 family 3 0 344 109262 3 Halothiobacillus genus 0 14 1 344 166 0 1 no rank 2636392 1860122 species 1 Halothiobacillus sp. LS2 0 166 1 Halothiobacillus neapolitanus species 927 164 0 0 287 1738654 family 2 287 9 0 1 2 Woeseia genus 1738655 1548547 species Woeseia oceani 1 0 278 Ectothiorhodospiraceae 18 family 72276 2959 0 41 1 85108 genus Halorhodospira 2 9 0 1 228 1 Halorhodospira halophila species 1053 219 0 1335745 genus Spiribacter 3 0 1 2 397 1 Spiribacter salinus species 1335746 177 0 0 218 1335757 Spiribacter curvatus 1 species Thioalkalivibrio 6 genus 106633 1526 0 46 1 256 0 Thioalkalivibrio nitratireducens 1 species 186931 416 0 1 Thioalkalivibrio sulfidiphilus species 1033854 106634 Thioalkalivibrio versutus 1 species 0 212 0 294 2621013 no rank 1 396595 Thioalkalivibrio sp. K90mix 1 species 0 294 108010 1 Thioalkalivibrio paradoxus species 0 302 0 1 1 256 1765964 Acidihalobacter 2 genus Acidihalobacter prosperus 1 species 160660 255 0 133193 2 Alkalilimnicola genus 0 1 11 269 0 258 351052 species 1 Alkalilimnicola ehrlichii 0 1 1 242 1051 genus 2 Ectothiorhodospira 241 0 no rank 1 2684909 1442136 species 1 Ectothiorhodospira sp. BSL-9 0 241 451214 no rank 2 0 309 309 0 1 4 genus Thiohalobacter 2 1273155 0 305 585455 species Thiohalobacter thiocyanaticus 1 family 3 Wenzhouxiangellaceae 1676141 405 0 3 1 1676142 genus 2 Wenzhouxiangella 3 0 1 402 1 Wenzhouxiangella marina species 1579979 399 0 0 1 36 3537 1046 Chromatiaceae 18 family 156885 genus 2 Thioflavicoccus 9 0 1 324 0 315 80679 Thioflavicoccus mobilis 1 species Marichromatium 2 genus 85076 362 0 1 5 species 1 Marichromatium purpuratum 37487 357 0 0 6 1 282 13724 genus Thiocystis 2 276 0 species 1 Thiocystis violascens 73141 0 11 1 931 53392 genus 2 Thiodictyon Candidatus Thiodictyon syntrophicum 1 species 1166950 920 0 2 Allochromatium genus 85072 275 0 1 3 Allochromatium vinosum 1 species 1049 272 0 1980513 Candidatus Nitrosoglobus 2 genus 1 0 3 298 1630141 Candidatus Nitrosoglobus terrae 1 species 0 295 745 0 1 6 4 Nitrosococcus genus 1227 370 0 species Nitrosococcus watsonii 1 473531 194 0 Nitrosococcus oceani 1 species 1229 133539 1 Nitrosococcus halophilus species 0 175 82569 no rank 1 0 284 1978339 species 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 284 1692040 6 Acidiferrobacterales order 0 5 1 614 609 11 0 1 family Acidiferrobacteraceae 5 1692041 0 4 1 187 1744881 Sulfuricaulis 2 genus 1620215 species 1 Sulfuricaulis limicola 0 183 411 0 1 9 genus 2 Sulfurifustis 1692042 1675686 Sulfurifustis variabilis 1 species 0 402 135618 order 13 Methylococcales 9 0 1 1999 1990 0 26 1 12 Methylococcaceae family 403 0 3 1 194 762296 Methylovulum 2 genus 1704499 species 1 Methylovulum psychrotolerans 0 191 213 0 4 1 genus Methylococcus 2 413 414 Methylococcus capsulatus 1 species 0 209 Methylomonas 5 genus 416 1114 1 0 36 225 0 no rank 1 2608980 1727196 species 1 Methylomonas sp. DH-1 0 225 421 1 Methylomonas methanica species 0 242 1 Methylomonas koyamae species 702114 225 0 1538553 1 Methylomonas denitrificans species 0 386 443 0 1 4 genus Methylomicrobium 2 39773 0 439 271065 species 1 Methylomicrobium alcaliphilum 5807 0 1 23 28 Aeromonadales order 135624 52 0 1 5784 84642 family 27 Aeromonadaceae genus 2 Tolumonas 43947 145 0 2 1 species 1 Tolumonas auensis 43948 143 0 genus 18 Aeromonas 642 4573 0 1 209 0 198 652 species 1 Aeromonas schubertii 644 1 Aeromonas hydrophila species 0 974 0 166 196024 species Aeromonas dhakensis 1 645 species Aeromonas salmonicida 1 0 592 0 179 651 1 Aeromonas media species 1 Aeromonas rivipollensis species 948519 147 0 species 1 Aeromonas veronii 654 475 0 0 1327 257493 8 no rank 171 0 Aeromonas sp. CA23 1 species 2033032 0 115 1636607 Aeromonas sp. ASNIH2 1 species 207 0 species Aeromonas sp. ASNIH4 1 1636609 Aeromonas sp. ASNIH5 1 species 1758179 172 0 0 107 1920107 species Aeromonas sp. ASNIH7 1 1636608 Aeromonas sp. ASNIH3 1 species 0 120 0 174 2033033 species 1 Aeromonas sp. CU5 261 0 Aeromonas sp. ASNIH1 1 species 1636606 648 Aeromonas caviae 1 species 0 97 0 209 558964 1 Aeromonas aquatica species 1 genus 129577 240 0 no rank 1 2636315 240 0 0 240 511062 species Oceanimonas sp. GK1 1 225143 Oceanisphaera 3 genus 0 9 1 430 species 1 Oceanisphaera profunda 1416627 212 0 species 1 Oceanisphaera sp. AMac2203 1903694 209 0 344 0 5 1 genus 2 Zobellella 347533 339 0 species Zobellella denitrificans 1 347534 0 4267 118884 no rank 13 1 genus 349742 318 0 0 318 1543721 1 Sedimenticola thiotaurini species 1524249 genus 2 Pseudohongiella 0 3 1 297 294 0 species Pseudohongiella spirulinae 1 1249552 1608298 genus 2 Thiolapillus 3 0 1 196 193 0 1 Thiolapillus brandeum species 1076588 clade 4 32036 1374 0 113267 species Bathymodiolus septemdierum thioautotrophic gill symbiont 1 0 377 2 Candidatus Ruthia genus 1541743 449 1 0 7 species Candidatus Ruthia magnifica 1 386487 442 0 548 0 1 Calyptogena okutanii thioautotrophic gill symbiont species 410330 3 Candidatus Thioglobus genus 655184 1316 0 24 1 1705394 Candidatus Thioglobus autotrophicus 1 species 0 417 1427364 1 Candidatus Thioglobus singularis species 0 875 0 766 198346 1 clade 766 0 Candidatus Baumannia cicadellinicola 1 species 186490 1934945 order 4 Immundisolibacterales 0 7 1 308 family 3 Immundisolibacteraceae 1934946 301 6 0 1 1934947 2 Immundisolibacter genus 0 6 1 295 1810504 Immundisolibacter cernigliae 1 species 0 289 0 180 135615 3 order family 3 Cardiobacteriaceae 868 180 2 0 1 0 1 3 178 869 Dichelobacter 2 genus 0 175 870 Dichelobacter nodosus 1 species 0 82 1 33367 135622 105 Alteromonadales order family 4 Psychromonadaceae 267894 938 0 2 1 3 Psychromonas genus 67572 936 1 0 1 1 no rank 2614957 406 0 0 406 314282 1 Psychromonas sp. CNPT3 species species Psychromonas ingrahamii 1 357794 529 0 0 17 1 6991 267890 Shewanellaceae 25 family 0 77 1 6974 22 genus 24 Shewanella 635 0 1 Shewanella halifaxensis species 271098 0 1198 196818 no rank 6 species Shewanella sp. W3-18-1 1 351745 244 0 Shewanella sp. ANA-3 1 species 94122 177 0 0 198 60481 species Shewanella sp. MR-7 1 0 199 2029986 species Shewanella sp. WE21 1 0 224 2059264 1 Shewanella sp. Pdp11 species 156 0 1 Shewanella sp. MR-4 species 60480 192 0 Shewanella amazonensis 1 species 60478 0 373 60961 Shewanella woodyi 1 species 436 0 species Shewanella violacea 1 60217 0 303 24 species 1 Shewanella putrefaciens 0 659 62322 species Shewanella baltica 1 Shewanella loihica 1 species 359303 172 0 204 0 Shewanella oneidensis 1 species 70863 0 349 56812 1 Shewanella frigidimarina species 143 0 1 Shewanella marisflavi species 260364 1 Shewanella pealeana species 70864 262 0 401 0 1 Shewanella japonica species 93973 176 0 1 Shewanella bicestrii species 2018305 1 Shewanella sediminis species 271097 315 0 0 291 192073 species Shewanella denitrificans 1 251 0 species Shewanella piezotolerans 1 404011 species 1 Shewanella psychrophila 225848 537 0 0 2 1 554 267891 family 2 Moritellaceae 58050 genus 1 0 552 0 552 80854 Moritella viscosa 1 species family Colwelliaceae 9 267889 3091 0 1 11 1518149 genus 2 Thalassotalea 0 1 1 431 430 0 1 Thalassotalea crassostreae species 1763536 28228 genus 6 Colwellia 0 1 16 2649 0 1605 196834 3 no rank 1 Colwellia sp. PAMC 21821 species 1816219 588 0 species 1 Colwellia sp. MT41 58049 460 0 557 0 Colwellia sp. PAMC 20917 1 species 1816218 28229 Colwellia psychrerythraea 1 species 0 476 0 552 1967665 species Colwellia beringensis 1 9684 0 14 1 family 25 Pseudoalteromonadaceae 267888 158 0 1 9670 53246 24 Pseudoalteromonas genus 490 0 Pseudoalteromonas piratica 1 species 1348114 0 282 152297 1 Pseudoalteromonas issachenkonii species 394751 species 1 Pseudoalteromonas arctica 0 365 0 464 161398 1 Pseudoalteromonas phenolica species 404 0 Pseudoalteromonas luteoviolacea 1 species 43657 0 256 176102 Pseudoalteromonas agarivorans 1 species 166935 species 1 Pseudoalteromonas translucida 0 299 28109 Pseudoalteromonas nigrifaciens 1 species 0 293 43659 species Pseudoalteromonas tetraodonis 1 0 293 0 2913 194690 5 no rank 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 species 0 384 0 347 283699 species 1 Pseudoalteromonas sp. Bsw20308 1761891 species Pseudoalteromonas sp. 13-15 1 0 418 1412 0 1 Pseudoalteromonas sp. NC201 species 1514074 352 0 Pseudoalteromonas sp. SM9913 1 species 234831 0 468 314281 Pseudoalteromonas tunicata 1 species 0 525 298657 species Pseudoalteromonas spongiae 1 401 0 1 Pseudoalteromonas aliena species 247523 43658 species 1 Pseudoalteromonas rubra 0 241 308 0 Pseudoalteromonas piscicida 1 species 43662 267375 species Pseudoalteromonas marina 1 0 357 0 305 28107 Pseudoalteromonas espejiana 1 species 550 0 species Pseudoalteromonas atlantica 1 288 species 1 Pseudoalteromonas haloplanktis 228 298 0 72275 family 30 Alteromonadaceae 36 0 1 11052 251 0 1 1 2 Agarivorans genus 261825 680279 species 1 Agarivorans gilvus 0 250 1621534 2 Paraglaciecola genus 0 1 1 662 326544 species 1 Paraglaciecola psychrophila 0 661 6262 0 44 1 genus Alteromonas 10 226 28108 species Alteromonas macleodii 1 0 3108 0 782 314275 Alteromonas mediterranea 1 species 276 0 1 Alteromonas australica species 589873 0 366 287094 1 Alteromonas addita species 0 997 2614992 no rank 3 species Alteromonas sp. Mac1 1 1777491 265 0 373 0 species 1 Alteromonas sp. MB-3u-76 2058133 Alteromonas sp. RW2A1 1 species 1917158 359 0 287 0 1 Alteromonas naphthalenivorans species 715451 1 Alteromonas stellipolaris species 233316 402 0 665 0 8 1 genus 3 Glaciecola 89404 species 1 Glaciecola nitratireducens 300231 331 0 2618684 no rank 1 0 326 Glaciecola sp. 4H-3-7+YE-5 1 species 983545 326 0 2835 0 78 1 Marinobacter 10 genus 2742 0 260 1420916 species Marinobacter similis 1 406 0 Marinobacter hydrocarbonoclasticus 1 species 2743 Marinobacter salarius 1 species 1420917 590 0 1033846 1 Marinobacter adhaerens species 0 267 238 0 Marinobacter psychrophilus 1 species 330734 0 774 83889 no rank 3 263 0 species 1 Marinobacter sp. CP1 1671721 280 0 species Marinobacter sp. LQ44 1 1749259 species Marinobacter sp. BSs20148 1 490759 231 0 1 Marinobacter salinus species 1874317 222 0 341 0 1 1 genus Lacimicrobium 2 1751872 340 0 species 1 Lacimicrobium alkaliphilum 1526571 1 0 5 260 267892 family 3 Ferrimonadaceae 255 1 0 1 genus 2 Ferrimonas 44011 254 0 1 Ferrimonas balearica species 44012 715 0 2 1 Idiomarinaceae 6 family 267893 0 1 12 713 135575 5 Idiomarina genus 203 0 1 Idiomarina loihiensis species 135577 322 0 2 no rank 2614829 species 1 Idiomarina sp. X4 2055892 169 0 0 153 2100422 species 1 Idiomarina sp. OT37-5b 0 176 1096243 Idiomarina piscisalsi 1 species 1240482 4 order 0 1014 1014 6 0 1 family 4 Orbaceae 1240483 Frischella 2 genus 1335631 462 4 0 1 0 458 1267021 species 1 Frischella perrara 0 546 1193503 genus 1 species 1 Gilliamella apicola 1196095 546 0 47734 159 0 1 129 Pseudomonadales order 72274 14953 0 1 52 42 Moraxellaceae family 468 genus 5 Moraxella 475 1225 0 4 1 155 0 species 1 Moraxella ovis 29433 0 276 480 species 1 Moraxella catarrhalis 34062 species 1 Moraxella osloensis 0 517 273 0 species 1 Moraxella bovoculi 386891 469 genus Acinetobacter 25 0 1 121 11248 1 Acinetobacter radioresistens species 40216 276 0 0 252 40214 Acinetobacter johnsonii 1 species 29430 1 Acinetobacter haemolyticus species 0 394 1789224 species Acinetobacter larvae 1 0 264 0 329 108981 Acinetobacter schindleri 1 species species Acinetobacter oleivorans 1 1148157 358 0 756892 1 Acinetobacter indicus species 0 169 1 Acinetobacter bereziniae species 106648 371 0 0 1948 196816 no rank 7 0 324 1636603 1 Acinetobacter sp. ACNIH1 species Acinetobacter sp. ACNIH2 1 species 1758189 283 0 species Acinetobacter sp. SWBY1 1 2079596 304 0 0 304 1646498 Acinetobacter sp. TTH0-4 1 species 1407071 species Acinetobacter sp. TGL-Y2 1 0 279 1808001 species Acinetobacter sp. LoGeW2-3 1 0 207 0 247 1608473 1 Acinetobacter sp. NCu2D-2 species 0 280 487316 1 Acinetobacter soli species 1 Acinetobacter junii species 40215 477 0 0 5091 909768 5 species group 0 671 471 1 Acinetobacter calcoaceticus species species Acinetobacter baumannii 1 470 1797 0 0 543 106654 species Acinetobacter nosocomialis 1 0 1721 48296 species 1 Acinetobacter pittii 359 0 1 Acinetobacter lactucae species 1785128 583 0 1 Acinetobacter equi species 1324350 0 335 202950 species 1 62977 strain 1 Acinetobacter sp. ADP1 0 335 2428 1 0 49 genus 11 Psychrobacter 497 0 208 330922 Psychrobacter cryohalolentis 1 species 0 208 334543 1 Psychrobacter arcticus species 348 0 1 Psychrobacter alimentarius species 261164 196806 no rank 6 0 1373 0 195 1720344 1 Psychrobacter sp. AntiMn-1 species 293 0 Psychrobacter sp. PRwf-1 1 species 349106 0 239 1028416 species Psychrobacter sp. DAB_AL43B 1 species 1 Psychrobacter sp. G 571800 210 0 0 222 1699622 species 1 Psychrobacter sp. P2G3 0 214 1699624 species 1 Psychrobacter sp. P11G5 45610 Psychrobacter urativorans 1 species 0 242 32622 0 186 1 86 Pseudomonadaceae family 135621 812 0 3 subfamily 351 812 0 10 1 genus Azotobacter 3 352 0 293 354 species 1 Azotobacter vinelandii 353 1 Azotobacter chroococcum species 0 509 1849530 2 Oblitimonas genus 2 0 1 271 0 269 1697053 species Oblitimonas alkaliphila 1 0 1 851 31353 286 genus 80 Pseudomonas 526 0 Pseudomonas frederiksbergensis 1 species 104087 354 0 1 Pseudomonas silesiensis species 1853130 216142 Pseudomonas rhizosphaerae 1 species 0 167 0 144 244566 Pseudomonas lurida 1 species 101564 Pseudomonas alcaliphila 1 species 0 211 0 204 1788301 species 1 Pseudomonas versuta 0 2021 136846 2 species group 1804 0 1 species subgroup 578833 1804 0 Pseudomonas stutzeri 1 species 316 0 217 74829 1 Pseudomonas balearica species species Pseudomonas parafulva 1 157782 350 0 237610 species 1 Pseudomonas psychrotolerans 0 236 157783 species Pseudomonas cremoricolorata 1 0 196 65741 species Pseudomonas knackmussii 1 0 267 0 6357 196821 no rank 30 Pseudomonas sp. PONIH3 1 species 1636610 183 0 170 0 species Pseudomonas sp. UW4 1 1207075 2018067 1 Pseudomonas sp. FDAARGOS_380 species 0 170 1981174 Pseudomonas sp. M30-35 1 species 0 222 0 243 1611770 species Pseudomonas sp. MRSN12121 1 305 0 1 Pseudomonas sp. TCU-HL1 species 1856685 0 198 1659194 species Pseudomonas sp. GR 6-02 1 0 339 1930532 Pseudomonas sp. CC6-YY-74 1 species species Pseudomonas sp. SWI36 1 2083052 161 0 Pseudomonas sp. LPH1 1 species 1898684 239 0 1 Pseudomonas sp. LH1G9 species 2083055 173 0 1 Pseudomonas sp. ATCC 13867 species 1294143 283 0 species Pseudomonas sp. JY-Q 1 1338689 160 0 0 149 2049589 1 Pseudomonas sp. HLS-6 species 0 224 1500686 Pseudomonas sp. Os17 1 species 1931241 species 1 Pseudomonas sp. S-6-2 0 278 166 0 Pseudomonas sp. CCOS 191 1 species 1649877 species 1 Pseudomonas sp. VLB120 69328 176 0 1415630 species Pseudomonas sp. TKP 1 0 388 374 0 1 Pseudomonas sp. URMO17WK12:I11 species 1283291 0 177 2083054 1 Pseudomonas sp. LG1D9 species 155 0 Pseudomonas sp. XWY-1 1 species 2069256 1534110 species 1 Pseudomonas sp. DR 5-09 0 183 Pseudomonas sp. StFLB209 1 species 1028989 202 0 0 183 2083053 1 Pseudomonas sp. SWI44 species 1500687 1 Pseudomonas sp. St29 species 0 190 1827300 Pseudomonas sp. MYb193 1 species 0 141 Pseudomonas sp. FGI182 1 species 1259844 135 0 180 0 species 1 Pseudomonas sp. SWI6 2083051 2067572 1 Pseudomonas sp. NC02 species 0 210 0 5002 136843 9 species group 1 Pseudomonas veronii species 76761 161 0 0 198 75612 1 Pseudomonas mandelii species 0 186 47879 species Pseudomonas corrugata 1 Pseudomonas fluorescens 1 species 294 2753 0 0 512 47878 species Pseudomonas azotoformans 1 0 584 200450 species 1 Pseudomonas trivialis 380021 Pseudomonas protegens 1 species 0 280 species Pseudomonas poae 1 200451 167 0 1 Pseudomonas orientalis species 76758 161 0 0 175 1583341 species Pseudomonas cerasi 1 0 192 237609 species 1 Pseudomonas alkylphenolica 136849 species group 8 0 2872 0 172 36746 Pseudomonas cichorii 1 species 200 0 no rank 1 2775504 species 1 Pseudomonas sp. Lz4W 1206777 200 0 species subgroup 1 251695 1291 0 1291 0 1 Pseudomonas syringae species 317 0 129 46257 Pseudomonas avellanae 1 species 251701 Pseudomonas syringae group genomosp. 3 1 species 0 369 152 0 species 1 Pseudomonas viridiflava 33069 251698 2 species subgroup 0 559 47877 species 1 Pseudomonas amygdali 0 243 0 316 29438 Pseudomonas savastanoi 1 species 0 209 312306 species Pseudomonas entomophila 1 species 1 Pseudomonas koreensis 198620 386 0 0 162 219572 species 1 Pseudomonas antarctica 0 407 930166 species Pseudomonas brassicacearum 1 0 4176 136841 species group 6 53408 species Pseudomonas citronellolis 1 0 491 1 species subgroup 1232139 383 0 Pseudomonas furukawaii 1 species 1149133 383 0 53412 species 1 Pseudomonas resinovorans 0 304 43263 species Pseudomonas alcaligenes 1 0 280 287 species 1 Pseudomonas aeruginosa 0 1773 300 Pseudomonas mendocina 1 species 0 945 6 species group 136845 4395 0 0 389 47880 species Pseudomonas fulva 1 0 621 76759 1 Pseudomonas monteilii species 0 175 70775 Pseudomonas plecoglossicida 1 species 527 0 species Pseudomonas mosselii 1 78327 Pseudomonas putida 1 species 303 2449 0 234 0 species 1 Pseudomonas oryzihabitans 47885 0 1493 136842 species group 2 296 Pseudomonas fragi 1 species 0 388 1105 0 Pseudomonas chlororaphis 1 species 587753 0 15 1 7631 118969 Legionellales 21 order 0 29 1 6562 444 family Legionellaceae 15 genus 2 Tatlockia 465 410 0 2 1 408 0 species 1 Tatlockia micdadei 451 6123 0 59 1 genus Legionella 12 445 0 220 452 Legionella spiritensis 1 species 570 0 1 Legionella endosymbiont of Polyplax serrata species 2005262 species 1 Legionella fallonii 96230 476 0 388 0 1 Legionella hackeliae species 449 Legionella longbeachae 1 species 450 550 0 1867846 species Legionella clemsonensis 1 0 388 1754 0 1 Legionella pneumophila species 446 species 1 Legionella lansingensis 45067 324 0 66969 species Legionella waltersii 1 0 457 385 0 species Legionella oakridgensis 1 29423 552 0 species Legionella sainthelensi 1 28087 1054 0 15 1 family 5 Coxiellaceae 118968 678 1 0 13 Coxiella 3 genus 776 2676648 1 no rank 0 271 325775 Coxiella endosymbiont of Amblyomma americanum 1 species 0 271 Coxiella burnetii 1 species 777 394 0 134284 no rank 1 0 361 361 0 1 Coxiella-like endosymbiont species 1592897 1 0 22 45040 135623 order Vibrionales 43 45018 0 74 1 family Vibrionaceae 42 641 37033 0 1 276 genus Vibrio 30 662 0 325 29494 1 Vibrio furnissii species 212663 species Vibrio tasmaniensis 1 0 463 species 1 Vibrio tritonius 1435069 313 0 0 388 2614977 no rank 2 0 136 2014742 1 Vibrio sp. 2521-89 species species Vibrio sp. EJY3 1 1116375 252 0 Vibrio vulnificus 1 species 672 1549 0 0 28162 717610 species group 10 5204 0 1 Vibrio rotiferianus species 190895 792 0 1 Vibrio jasicida species 766224 2141 0 species Vibrio owensii 1 696485 0 10406 680 species 1 Vibrio campbellii 670 species 1 Vibrio parahaemolyticus 0 1205 Vibrio alginolyticus 1 species 663 1865 0 Vibrio harveyi 1 species 669 5114 0 0 921 2315253 2 species subgroup 332 0 Vibrio antiquarius 1 species 150340 589 0 1 Vibrio diabolicus species 50719 514 0 1 Vibrio natriegens species 691 1 Vibrio mimicus species 674 363 0 580 0 1 Vibrio anguillarum species 55601 415 0 species Vibrio cholerae 1 666 0 272 676 species Vibrio fluvialis 1 species Vibrio tapetis 1 52443 385 0 224 0 species 1 Vibrio qinghaiensis 2025808 0 703 190893 species Vibrio coralliilyticus 1 0 212 553239 Vibrio breoganii 1 species 0 601 28173 1 Vibrio nigripulchritudo species 373 0 species 1 Vibrio scophthalmi 45658 687 species 1 Vibrio gazogenes 0 312 427 0 species group 1 1891919 29498 species Vibrio tubiashii 1 0 427 0 690 1534743 species Vibrio hyugaensis 1 246861 1 genus 0 187 0 187 673 species Grimontia hollisae 1 657 Photobacterium 4 genus 1 0 8 4815 74109 Photobacterium profundum 1 species 0 353 0 167 1295392 species 1 Photobacterium gaetbulicola 38293 species 1 Photobacterium damselae 0 4287 1452 0 3 1 genus Paraphotobacterium 2 2042066 species Paraphotobacterium marinum 1 1755811 1449 0 genus 4 Aliivibrio 511678 1457 1 0 1 80852 species Aliivibrio wodanis 1 0 637 668 species Aliivibrio fischeri 1 0 476 343 0 species 1 Aliivibrio salmonicida 40269 60325 183 0 1 245 Enterobacterales order 91347 family Pectobacteriaceae 20 1903410 3410 0 1 10 genus 6 Pectobacterium 122277 1274 0 26 1 species 1 Pectobacterium wasabiae 55208 139 0 0 147 2042057 species 1 Pectobacterium polaris species Pectobacterium parmentieri 1 1905730 353 0 1 Pectobacterium carotovorum species 554 466 0 1 Pectobacterium atrosepticum species 29471 143 0 1109 0 1 28 genus Dickeya 6 204037 0 154 1778540 1 Dickeya fangzhongdai species 0 255 1089444 species 1 Dickeya solani 148 0 species 1 Dickeya dadantii 204038 204039 species 1 Dickeya dianthicola 0 126 398 0 1 Dickeya zeae species 204042 819 21 0 1 Sodalis 5 genus 84565 1239307 species 1 Sodalis praecaptivus 0 129 Candidatus Sodalis pierantonius 1 species 1486991 226 0 Sodalis glossinidius 1 species 63612 155 0 288 0 species Sodalis endosymbiont of Henestaris halophilus 1 1929246 0 3 1 198 71655 Brenneria 2 genus 0 195 1109412 species 1 Brenneria goodwinii 1903409 family 28 Erwiniaceae 1 0 32 10076 2 Wigglesworthia genus 51228 1056 10 0 1 species 1 Wigglesworthia glossinidia 51229 1046 0 2100764 2 genus 0 382 0 226 665913 1 Pantoea calida species 665914 species Pantoea gaviniae 1 0 156 5137 0 8 1 genus Buchnera 2 32199 5129 0 species Buchnera aphidicola 1 9 551 genus Erwinia 8 1 0 17 1113 552 1 Erwinia amylovora species 0 141 228 0 1 Candidatus Erwinia sp. ErCipseudotaxifoliae species 1922217 Erwinia tasmaniensis 1 species 338565 111 0 111 0 1 no rank 2622719 111 0 1 Erwinia sp. Ejp617 species 215689 0 155 1619313 species Erwinia gerundensis 1 182337 Erwinia billingiae 1 species 0 213 0 137 79967 species 1 Erwinia pyrifoliae 126 1 0 1 Tatumella 2 genus 82986 Tatumella citrea 1 species 53336 125 0 53335 genus 11 Pantoea 0 71 1 2230 0 157 1891675 Pantoea alhagi 1 species 0 175 66269 1 Pantoea stewartii species 470934 species Pantoea vagans 1 0 363 254 0 1 species group 1654067 549 Pantoea agglomerans 1 species 0 254 321 0 species 1 Candidatus Pantoea carbekii 1235990 112 0 species 1 Pantoea rwandensis 1076550 3 no rank 2630326 530 0 0 205 592316 species Pantoea sp. At-9b 1 0 202 1484157 Pantoea sp. PSNIH2 1 species 1484158 species Pantoea sp. PSNIH1 1 0 123 species Pantoea ananatis 1 553 247 0 0 8 1 5874 1903412 14 Hafniaceae family 635 genus Edwardsiella 8 0 1 28 5260 0 96 93378 species 1 Edwardsiella hoshinae 1263550 species Edwardsiella piscicida 1 0 177 0 4269 636 Edwardsiella tarda 1 species 1821960 1 Edwardsiella anguillarum species 0 181 356 0 2 no rank 2676541 species Edwardsiella sp. LADL05-105 1 1650654 159 0 197 0 Edwardsiella sp. EA181011 1 species 1578828 0 153 67780 1 Edwardsiella ictaluri species Hafnia 3 genus 568 469 0 11 1 1 Hafnia alvei species 569 324 0 134 0 1 no rank 2621980 1 Hafnia sp. CBA7124 species 1848580 134 0 0 3 1 137 82982 2 Obesumbacterium genus 82983 1 Obesumbacterium proteus species 0 134 26725 0 1 187 116 Enterobacteriaceae family 543 0 3636 191675 18 no rank 3636 0 clade 18 84563 536 0 4 clade 146507 species secondary endosymbiont of Heteropsylla cubana 1 134287 211 0 0 2 1 234 568987 genus Candidatus Hamiltonella 2 0 232 138072 species 1 Candidatus Hamiltonella defensa 0 91 1199245 species secondary endosymbiont of Ctenarytaina eucalypti 1 197 0 1 clade 199891 species 1 secondary endosymbiont of Trabutina mannipara 1835721 197 0 genus Candidatus Mikella 2 1906660 253 0 3 1 0 250 1778264 1 Candidatus Mikella endobia species 1906661 genus 1 0 231 Candidatus Gullanella endobia 1 species 1070130 231 0 1 genus 1906659 85 0 species Candidatus Hoaglandella endobia 1 1778263 85 0 0 1738 84564 clade 7 203804 7 Candidatus Blochmannia genus 0 2 1 1738 711328 no rank 2 0 574 0 293 1505597 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 0 281 1505596 species 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 296 0 1 Candidatus Blochmannia floridanus species 203907 0 356 251535 Candidatus Blochmannia vafer 1 species Candidatus Blochmannia pennsylvanicus 1 species 101534 255 0 255 0 species 1 Candidatus Blochmannia chromaiodes 251542 0 517 1682492 1 genus 517 0 Candidatus Tachikawaea gelatinosa 1 species 1410383 0 79 1906657 genus 1 0 79 1778262 Candidatus Doolittlea endobia 1 species 413496 Cronobacter 8 genus 0 27 1 1008 0 128 413501 1 Cronobacter muytjensii species 100 0 species Cronobacter malonaticus 1 413503 Cronobacter condimenti 1 species 1163710 109 0 138 0 Cronobacter universalis 1 species 535744 0 130 413497 1 Cronobacter dublinensis species 1 Cronobacter turicensis species 413502 118 0 258 0 species Cronobacter sakazakii 1 28141 36866 no rank 5 0 1138 891974 species Plautia stali symbiont 1 0 633 693444 Enterobacteriaceae bacterium strain FGI 57 1 species 0 125 138 0 Enterobacteriaceae bacterium ENNIH3 1 species 1920128 Enterobacteriaceae bacterium ENNIH2 1 species 1920109 125 0 species Enterobacteriaceae bacterium ENNIH1 1 2066051 117 0 577 0 7 1 genus Kosakonia 5 1330547 species Kosakonia radicincitans 1 283686 187 0 1 Kosakonia cowanii species 208223 124 0 0 122 1158459 species Kosakonia sacchari 1 0 137 497725 species Kosakonia oryzae 1 genus Escherichia 5 561 3315 1 0 15 67 0 Escherichia fergusonii 1 species 564 88 0 1 Escherichia marmotae species 1499973 562 1 Escherichia coli species 0 2938 0 207 208962 species 1 Escherichia albertii Lelliottia 4 genus 1330545 480 1 0 3 88 0 1 Lelliottia nimipressuralis species 69220 species Lelliottia jeotgali 1 1907578 132 0 0 257 61646 Lelliottia amnigena 1 species genus 1 409304 439 0 439 0 1 Candidatus Ishikawaella capsulata species 168169 158483 genus Cedecea 2 0 1 1 419 158822 species 1 Cedecea neteri 0 418 genus Salmonella 3 590 3180 0 1 3 0 2974 28901 species 1 Salmonella enterica 0 203 54736 Salmonella bongori 1 species 0 53 1 2275 544 Citrobacter 14 genus 0 256 35703 Citrobacter amalonaticus 1 species 239 0 1 Citrobacter farmeri species 67824 0 1243 1344959 species group 7 91 0 Citrobacter freundii complex sp. CFNIH3 1 species 2077147 0 99 2077148 1 Citrobacter freundii complex sp. CFNIH4 species species Citrobacter freundii complex sp. CFNIH2 1 2066049 89 0 0 89 2077149 Citrobacter freundii complex sp. CFNIH9 1 species 0 174 67827 Citrobacter werkmanii 1 species 0 522 546 Citrobacter freundii 1 species 179 0 species 1 Citrobacter braakii 57706 229 0 2 no rank 2644389 Citrobacter sp. CFNIH10 1 species 1920110 121 0 0 108 1702170 species 1 Citrobacter sp. FDAARGOS_156 1 Citrobacter koseri species 545 134 0 0 121 67825 species Citrobacter rodentium 1 genus 2 Candidatus Riesia 401618 305 0 4 1 species Candidatus Riesia pediculicola 1 401619 301 0 98 0 1 genus 1335483 Shimwellia blattae 1 species 563 98 0 0 1 129 3194 547 22 Enterobacter genus 0 703 2608935 no rank 9 97 0 species Enterobacter sp. 638 1 399742 0 58 1827481 species Enterobacter sp. ODB01 1 106 0 1 Enterobacter sp. R4-368 species 1166130 Enterobacter sp. HK169 1 species 1868135 63 0 62 0 Enterobacter sp. CRENT-193 1 species 2051905 species 1 Enterobacter sp. FY-07 1692238 81 0 1914861 species 1 Enterobacter sp. SA187 0 121 1560339 Enterobacter sp. E20 1 species 0 59 0 56 1977566 species Enterobacter sp. Crenshaw 1 0 2362 354276 species group 12 Enterobacter hormaechei 3 species 158836 591 0 1 428 0 75 1296536 subspecies Enterobacter xiangfangensis 1 1812934 1 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 0 88 69218 species 1 Enterobacter cancerogenus 0 103 61645 1 Enterobacter asburiae species 0 258 227 0 no rank 3 2757714 1 Enterobacter cloacae complex sp. ECNIH7 species 1915310 70 0 0 82 2077137 species 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 75 0 species 1 Enterobacter cloacae complex bacterium 2027919 64 0 species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 0 56 208224 Enterobacter kobei 1 species 1 Enterobacter cloacae species 550 993 0 0 70 299767 species Enterobacter ludwigii 1 0 115 579 1 genus 0 115 61648 species Kluyvera intermedia 1 0 10 1 389 83654 genus Leclercia 4 0 140 83655 species 1 Leclercia adecarboxylata 2627398 2 no rank 0 239 species 1 Leclercia sp. LSNIH3 1920116 107 0 0 132 1920114 1 Leclercia sp. LSNIH1 species 556 0 1 6 Raoultella 3 genus 160674 0 108 575 1 Raoultella planticola species 1 Raoultella ornithinolytica species 54291 442 0 620 Shigella 4 genus 0 1 3 173 species 1 Shigella dysenteriae 622 82 0 0 49 2629414 no rank 1 0 49 1813821 1 Shigella sp. PAMC 28760 species 0 39 623 1 Shigella flexneri species 1048757 genus 1 0 70 70 0 species Candidatus Moranella endobia 1 1048758 570 Klebsiella 10 genus 0 83 1 4755 no rank 2 2608929 308 0 1934254 species Klebsiella sp. M5al 1 0 153 0 155 1905288 species Klebsiella sp. LTGPAF-6F 1 0 190 1463165 1 Klebsiella quasipneumoniae species 571 species 1 Klebsiella oxytoca 0 679 0 1794 573 1 Klebsiella pneumoniae species 0 137 2026240 1 Klebsiella quasivariicola species 824 0 species 1 Klebsiella aerogenes 548 244366 Klebsiella variicola 1 species 0 333 0 407 1134687 1 Klebsiella michiganensis species 0 416 1330546 2 genus 225 0 1 Pluralibacter gergoviae species 61647 [Enterobacter] lignolyticus 1 species 1334193 191 0 226 0 2 no rank 451511 2 Plesiomonas genus 702 226 2 0 1 703 1 Plesiomonas shigelloides species 0 224 family 22 Morganellaceae 1903414 4715 0 1 25 1 0 4 490 637 Arsenophonus 2 genus 486 0 species Arsenophonus symbiont of Lipoptena fortisetosa 1 634113 0 1 7 1096 626 6 Xenorhabdus genus 201 0 species Xenorhabdus hominickii 1 351679 40577 Xenorhabdus poinarii 1 species 0 169 40576 Xenorhabdus bovienii 1 species 0 367 1 Xenorhabdus nematophila species 628 189 0 0 163 351671 Xenorhabdus doucetiae 1 species 0 1 4 212 581 genus 2 Morganella 0 208 582 1 Morganella morganii species 3 0 1 911 586 genus 4 Providencia 0 373 588 Providencia stuartii 1 species 349 0 species 1 Providencia rettgeri 587 186 0 1 Providencia alcalifaciens species 126385 774 0 3 1 genus 4 Photorhabdus 29487 species 1 Photorhabdus asymbiotica 291112 300 0 211 0 species 1 Photorhabdus temperata 574560 Photorhabdus luminescens 1 species 29488 260 0 583 genus 3 Proteus 0 6 1 1207 1 Proteus vulgaris species 585 394 0 0 807 584 1 Proteus mirabilis species 1903416 family 3 Budviciaceae 3 0 1 187 0 3 1 184 82984 genus 2 Pragia 82985 1 Pragia fontium species 0 181 0 33 1 8929 1903411 family Yersiniaceae 39 16 0 1 520 34037 genus Rahnella 4 2635087 2 no rank 0 346 species 1 Rahnella sp. Y9602 741091 158 0 1805933 species Rouxiella sp. ERMR1:05 1 0 188 34038 species 1 Rahnella aquatilis 0 158 929812 genus Gibbsiella 2 0 1 2 156 0 154 929813 Gibbsiella quercinecans 1 species 1 0 genus Rouxiella 1 1565532 1 0 48 4058 629 13 Yersinia genus 1649845 species group 3 0 1588 481 0 species Yersinia pseudotuberculosis 1 633 0 663 367190 Yersinia similis 1 species 632 Yersinia pestis 1 species 0 444 185 0 species 1 Yersinia rohdei 29485 2653513 1 no rank 0 195 1839800 Yersinia sp. FDAARGOS_228 1 species 0 195 Yersinia kristensenii 1 species 28152 182 0 Yersinia aldovae 1 species 29483 177 0 631 species 1 Yersinia intermedia 0 205 1 Yersinia aleksiciae species 263819 118 0 212 0 1 Yersinia ruckeri species 29486 0 657 630 Yersinia enterocolitica 1 species species Yersinia frederiksenii 1 29484 491 0 16 Serratia genus 613 4027 0 115 1 2647522 8 no rank 0 1306 1 Serratia sp. ATCC 39006 species 104623 145 0 183 0 species 1 Serratia sp. MYb239 2033438 249 0 species 1 Serratia sp. SCBI 488142 species Serratia sp. AS12 1 768490 120 0 166 0 species 1 Serratia sp. SSNIH1 1758196 163 0 Serratia sp. FS14 1 species 1327989 160 0 1 Serratia sp. FGI94 species 671990 120 0 species 1 Serratia sp. AS13 768493 614 Serratia liquefaciens 1 species 0 211 353 0 species 1 Serratia plymuthica 82996 1 Serratia proteamaculans species 28151 116 0 0 178 61652 Serratia rubidaea 1 species 447 0 species 1 Serratia fonticola 47917 1125 0 species 1 Serratia marcescens 615 176 0 Serratia ficaria 1 species 61651 134 0 1 1 Chania 2 genus 1745211 0 133 1639108 1 Chania multitudinisentens species Alphaproteobacteria 560 class 28211 210119 208 0 1 19 Caulobacterales order 204458 4205 28 0 1 76892 family Caulobacteraceae 18 94 0 1 4177 0 212 81440 1 no rank 1759059 species 1 Caulobacteraceae bacterium OTSz_A_272 0 212 20 2 Phenylobacterium genus 4 0 1 385 species 1 Phenylobacterium zucineum 284016 381 0 1491 1 0 55 7 Brevundimonas genus 41275 1 Brevundimonas subvibrioides species 74313 259 0 0 781 2622653 no rank 3 1827469 1 Brevundimonas sp. GW460-12-10-14-LB2 species 0 199 species Brevundimonas sp. DS20 1 1532555 216 0 1938605 Brevundimonas sp. LM2 1 species 0 366 201 0 species 1 Brevundimonas vesicularis 41276 0 195 588932 species Brevundimonas naejangsanensis 1 1796 1 0 43 6 Caulobacter genus 75 302 0 Caulobacter segnis 1 species 88688 species Caulobacter mirabilis 1 69666 315 0 266 0 species Caulobacter henricii 1 69395 155892 species Caulobacter vibrioides 1 0 542 328 0 1 no rank 2648921 0 328 366602 1 Caulobacter sp. K31 species 76890 1 genus 0 199 78587 species 1 Asticcacaulis excentricus 0 199 0 1467 2800060 order 6 0 18 1 1467 69657 Hyphomonadaceae 6 family 85 Hyphomonas 3 genus 0 1 19 856 no rank 1 2630699 600 0 1906738 Hyphomonas sp. Mor2 1 species 0 600 237 0 species 1 Hyphomonas neptunium 81032 2723 Hirschia 2 genus 0 8 1 593 585 0 Hirschia baltica 1 species 2724 0 344 2800059 2 order 0 344 2800061 2 family 74317 genus 2 Maricaulis 0 1 5 344 339 0 Maricaulis maris 1 species 74318 0 28 1 14442 766 order Rickettsiales 54 0 1014 1699067 no rank 1 0 1014 1528098 species 1 Rickettsiales bacterium Ac37b 775 family Rickettsiaceae 26 0 16 1 5699 2115980 1 genus 0 412 Candidatus Phycorickettsia trachydisci 1 species 2115978 412 0 tribe 24 33988 5271 0 4408 1 0 414 genus 23 Rickettsia 780 114277 17 species group 0 1573 786 1 Rickettsia akari species 0 217 0 35 35790 species Rickettsia japonica 1 33 0 species Rickettsia rickettsii 1 783 Rickettsia amblyommatis 1 species 33989 86 0 35792 species Rickettsia parkeri 1 0 21 0 292 787 1 Rickettsia australis species species 1 Rickettsia rhipicephali 33992 89 0 Rickettsia felis 1 species 42862 254 0 17 0 Rickettsia conorii 1 species 781 0 22 35788 Rickettsia africae 1 species 1105106 species Rickettsia philipii 1 0 22 109232 1 Rickettsia monacensis species 0 189 26 0 species Rickettsia slovaca 1 35794 35791 Rickettsia massiliae 1 species 0 57 0 43 226665 1 Rickettsia heilongjiangensis species 40 0 species 1 Rickettsia montanensis 33991 47589 species Rickettsia peacockii 1 0 130 1 no rank 114295 494 0 Rickettsia endosymbiont of Bemisia tabaci 1 species 337479 494 0 1013 0 2 species group 114292 785 1 Rickettsia typhi species 0 534 479 0 1 Rickettsia prowazekii species 782 1129742 2 species group 0 914 species Rickettsia bellii 1 33990 550 0 0 364 788 species 1 Rickettsia canadensis genus 1 69474 863 0 0 863 784 1 Orientia tsutsugamushi species 1328881 Candidatus Midichloriaceae 3 family 0 1 1 418 417 0 6 1 genus Candidatus Midichloria 2 411566 species 1 Candidatus Midichloria mitochondrii 234827 411 0 18 0 1 7283 942 family 23 Anaplasmataceae 25 0 1 3132 943 Ehrlichia 6 genus 599 0 no rank 1 106181 0 599 391036 species Ehrlichia sp. HF 1 106178 4 species group 0 2508 species 1 Ehrlichia canis 944 703 0 Ehrlichia chaffeensis 1 species 945 601 0 Ehrlichia ruminantium 1 species 779 668 0 0 536 35795 Ehrlichia muris 1 species 0 3186 952 8 tribe 0 81 1 3186 953 8 Wolbachia genus no rank 7 2640676 3105 0 77038 species 1 Wolbachia endosymbiont of Drosophila simulans 0 850 394 0 species 1 Wolbachia sp. wRi 66084 246273 1 Wolbachia endosymbiont of Cimex lectularius species 0 356 100901 1 Wolbachia endosymbiont of Onchocerca ochengi species 0 378 Wolbachia endosymbiont of Onchocerca volvulus 1 species 77551 365 0 365 0 Wolbachia endosymbiont of Drosophila melanogaster 1 species 163164 0 397 80849 1 Wolbachia endosymbiont of Brugia malayi species 0 1 3 379 768 Anaplasma 4 genus 106179 species group 1 0 178 948 species Anaplasma phagocytophilum 1 0 178 0 115 770 species 1 Anaplasma marginale 0 83 769 species 1 Anaplasma centrale genus Neorickettsia 4 33993 568 9 0 1 178 0 species 1 Neorickettsia sennetsu 951 0 175 33994 1 Neorickettsia helminthoeca species 0 206 950 1 Neorickettsia risticii species 0 2795 82117 no rank 8 Polymorphum 2 genus 991903 426 1 0 15 411 0 species Polymorphum gilvum 1 991904 0 1 4 301 213485 genus Micavibrio 2 1 Micavibrio aeruginosavorus species 349221 297 0 1632780 Phreatobacter 2 genus 0 1 14 417 0 403 1868589 species 1 Phreatobacter sp. S-12 62654 clade 2 0 1651 1651 0 8 1 Candidatus Puniceispirillum 2 genus 767891 0 1643 767892 1 Candidatus Puniceispirillum marinum species 81 Sphingomonadales order 204457 16955 89 0 1 163 0 1 13136 41297 58 Sphingomonadaceae family 227 0 1 genus 2709685 0 227 266812 species 1 Sphingorhabdus flavimaris 240 0 1 genus 2685927 240 0 Sphingomonas sp. JJ-A5 1 species 1921510 genus Novosphingobium 5 165696 1087 1 0 41 158500 Novosphingobium resinovorum 1 species 0 321 species Novosphingobium aromaticivorans 1 48935 194 0 0 259 2644732 1 no rank 702113 1 Novosphingobium sp. PP1Y species 0 259 272 0 1 Novosphingobium pentaromativorans species 205844 4368 0 103 1 15 Sphingomonas genus 13687 247 0 Sphingomonas koreensis 1 species 93064 1560345 1 Sphingomonas panacis species 0 271 196159 no rank 6 0 1851 1 Sphingomonas sp. NIC1 species 1961362 209 0 745310 Sphingomonas sp. MM-1 1 species 0 266 0 227 1030157 species 1 Sphingomonas sp. KC8 0 230 1327635 Sphingomonas sp. Cra20 1 species 1390395 species Sphingomonas sp. LK11 1 0 659 260 0 species Sphingomonas sp. LM7 1 1938607 species 1 Sphingomonas sanxanigenens 397260 361 0 236 0 species Sphingomonas melonis 1 152682 240 0 species 1 Sphingomonas hengshuiensis 1609977 812 0 1 408 Sphingomonas wittichii 2 species 160791 1283312 strain 1 Sphingomonas sp. DC-6 0 404 0 247 1549858 species 1 Sphingomonas taxi 72173 genus Citromicrobium 2 0 1 2 173 171 0 no rank 1 2630544 171 0 species Citromicrobium sp. JL477 1 1634516 Sphingorhabdus 3 genus 1434046 445 0 1 14 0 431 2614947 no rank 2 species 1 Sphingorhabdus sp. YGSMI21 2077182 217 0 214 0 Sphingorhabdus sp. M41 1 species 1806885 150203 2 Blastomonas genus 0 1 1 280 279 0 no rank 1 2626550 1842535 species Blastomonas sp. RAC04 1 0 279 1649486 2 Rhizorhabdus genus 0 1 5 374 1850238 species 1 Rhizorhabdus dicambivorans 0 369 0 1 74 2368 165697 genus Sphingopyxis 10 33050 species 1 Sphingopyxis macrogoltabida 0 416 220 0 species Sphingopyxis fribergensis 1 1515612 1 Sphingopyxis terrae species 33052 175 0 1 Sphingopyxis alaskensis species 117207 218 0 0 235 267128 1 Sphingopyxis granuli species 2614943 4 no rank 0 1030 229 0 species Sphingopyxis sp. QXT-31 1 1357916 0 278 1866325 Sphingopyxis sp. MG 1 species species 1 Sphingopyxis sp. LPB0140 1913578 334 0 292913 Sphingopyxis sp. 113P3 1 species 0 189 482 0 genus 1 541 0 482 542 species Zymomonas mobilis 1 Sphingobium 15 genus 165695 2929 0 106 1 Sphingobium cloacae 1 species 120107 208 0 141 0 species 1 Sphingobium herbicidovorans 76947 204 0 species Sphingobium indicum 1 332055 1 Sphingobium chlorophenolicum species 46429 186 0 0 194 332056 species 1 Sphingobium japonicum 320 0 species 1 Sphingobium yanoikuyae 13690 1673076 1 Sphingobium hydrophobicum species 0 197 Sphingobium baderi 1 species 1332080 159 0 1214 0 6 no rank 2611147 1315974 species 1 Sphingobium sp. TKS 0 238 221 0 species 1 Sphingobium sp. YBL2 484429 0 142 1855519 species Sphingobium sp. EP60837 1 species Sphingobium sp. MI1205 1 407020 173 0 Sphingobium sp. SYK-6 1 species 627192 257 0 1 Sphingobium sp. RAC03 species 1843368 183 0 family 22 Erythrobacteraceae 335929 3730 0 57 1 4 Altererythrobacter genus 361177 528 49 0 1 1267766 1 Altererythrobacter atlanticus species 0 138 species 1 Altererythrobacter ishigakiensis 476157 163 0 178 0 species 1 Altererythrobacter epoxidivorans 361183 171 0 1 genus 2800685 543877 Altererythrobacter marensis 1 species 0 171 1855416 genus 2 0 307 0 137 266951 1 Erythrobacter seohaensis species 170 0 Erythrobacter flavus 1 species 192812 375 0 10 1 genus 3 Croceicoccus 1295327 207 0 1 Croceicoccus marinus species 450378 158 0 species 1 Croceicoccus naphthovorans 1348774 0 246 2800682 1 genus 246 0 species 1 Altererythrobacter namhicola 645517 genus 2 2800681 554 0 289 0 species Erythrobacter atlanticus 1 1648404 265 0 species 1 Erythrobacter gangjinensis 502682 1157 0 6 no rank 2800788 1041 3 Erythrobacter genus 0 42 1 669 432 0 Erythrobacter litoralis 1 species 39960 1112 1 Porphyrobacter neustonensis species 0 195 genus 3 Porphyrobacter 1111 488 0 21 1 467 0 2 no rank 2683265 234 0 Porphyrobacter HT-58-2 1 species 2023229 1896196 Porphyrobacter sp. LM 6 1 species 0 233 335 0 genus 2 2800686 1 Altererythrobacter dongtanensis species 692370 175 0 160 0 species 1 Altererythrobacter mangrovi 1982042 3 0 1 457 255473 order 4 Parvularculales 0 5 1 454 255474 Parvularculaceae 3 family 0 1 8 449 208215 genus Parvularcula 2 441 0 species Parvularcula bermudensis 1 208216 54526 Pelagibacterales 9 order 15 0 1 73082 1655514 family 6 Pelagibacteraceae 0 1 30 67081 1655516 no rank 2 0 36019 3343 0 alpha proteobacterium HIMB59 1 species 744985 0 32676 859653 alpha proteobacterium HIMB5 1 species 31032 0 15 1 genus 3 Candidatus Pelagibacter 198251 198252 Candidatus Pelagibacter ubique 1 species 0 25659 1 no rank 2647897 5358 0 1002672 1 Candidatus Pelagibacter sp. IMCC9063 species 0 5358 0 17 1 5986 2045213 2 Candidatus Fonsibacter genus 0 5969 1925548 species Candidatus Fonsibacter ubiquis 1 204441 order 65 Rhodospirillales 0 100 1 15648 41295 30 Rhodospirillaceae family 0 117 1 9664 333 0 1 3 Niveispirillum 2 genus 1543704 species 1 Niveispirillum cyanobacteriorum 1612173 330 0 1804663 genus 2 Haematospirillum 0 1 12 281 0 269 1549855 species 1 Haematospirillum jordaniae 548 1 0 9 Tistrella 2 genus 171436 539 0 species 1 Tistrella mobilis 171437 13134 genus Magnetospirillum 5 0 1 65 1728 376 0 Magnetospirillum magneticum 1 species 84159 513 0 Magnetospirillum gryphiswaldense 1 species 55518 no rank 2 2617991 774 0 0 417 1639348 species 1 Magnetospirillum sp. ME-1 357 0 species 1 Magnetospirillum sp. XM-1 1663591 3 Thalassospira genus 168934 864 0 11 1 423 0 1 Thalassospira xiamenensis species 220697 430 0 species 1 Thalassospira sp. CSC3H3 2048283 1612157 genus Pararhodospirillum 2 0 3 1 243 1084 1 Pararhodospirillum photometricum species 0 240 1543705 genus 2 Nitrospirillum 7 0 1 473 0 466 28077 species 1 Nitrospirillum amazonense 724 0 8 1 genus Rhodospirillum 3 1081 323 0 species Rhodospirillum rubrum 1 1085 393 0 1 Rhodospirillum centenum species 34018 2969 0 65 1 Azospirillum 5 genus 191 Azospirillum thiophilum 1 species 528244 631 0 0 322 1226968 species Azospirillum humicireducens 1 192 species Azospirillum brasilense 1 0 890 193 species Azospirillum lipoferum 1 0 1061 0 1 7 310 1182780 genus Magnetospira 2 2685734 1 no rank 0 303 1288970 1 Magnetospira sp. QH-2 species 0 303 0 1074 1263978 genus 1 1263979 species Candidatus Endolissoclinum faulkneri 1 0 1074 0 58 1 5884 433 Acetobacteraceae 34 family genus Gluconacetobacter 2 89583 259 5 0 1 Gluconacetobacter diazotrophicus 1 species 33996 254 0 Acetobacter 8 genus 434 1769 0 1 21 446692 species 1 Acetobacter senegalensis 0 166 104102 Acetobacter tropicalis 1 species 0 247 0 172 1076596 1 Acetobacter persici species 1 Acetobacter pomorum species 65959 166 0 0 695 438 Acetobacter pasteurianus 1 species 151157 1 subgenus 0 148 species Acetobacter aceti 1 435 148 0 1633874 Acetobacter oryzifermentans 1 species 0 154 762 0 21 1 Acidiphilium 3 genus 522 349 0 species 1 Acidiphilium cryptum 524 62140 species Acidiphilium multivorum 1 0 392 0 1 2 346 364409 2 Granulibacter genus 364410 1 Granulibacter bethesdensis species 0 344 0 1 9 428 441 genus Gluconobacter 3 278 0 Gluconobacter oxydans 1 species 442 species 1 Gluconobacter albidus 318683 141 0 1 0 1 203 153497 Kozakia 2 genus species Kozakia baliensis 1 153496 202 0 3 Roseomonas genus 125216 774 0 12 1 2617492 1 no rank 0 391 0 391 2018065 1 Roseomonas sp. FDAARGOS_362 species 371 0 1 Roseomonas gilardii species 257708 genus Asaia 2 91914 133 0 1 1 species 1 Asaia bogorensis 91915 132 0 320496 1 genus 0 137 0 137 320497 Neoasaia chiangmaiensis 1 species genus Parasaccharibacter 2 1602345 116 0 1 1 0 115 1510841 species 1 Parasaccharibacter apium 1434011 genus 5 Komagataeibacter 19 0 1 899 0 181 1177712 1 Komagataeibacter medellinensis species 0 245 265960 1 Komagataeibacter nataicola species species Komagataeibacter europaeus 1 33995 145 0 28448 species Komagataeibacter xylinus 1 0 309 220 2 0 1 order Magnetococcales 2 1191478 218 0 1 family 1191479 1 genus 162171 218 0 Magnetococcus marinus 1 species 1124597 218 0 order Holosporales 7 1921002 1365 3 0 1 383 2 0 1 family Candidatus Paracaedibacteraceae 2 1777752 1521255 genus 1 0 381 1 Candidatus Paracaedibacter acanthamoebae species 91604 381 0 2100208 family Caedimonadaceae 3 0 3 1 550 1509243 genus Candidatus Nucleicultrix 2 0 1 3 547 544 0 species Candidatus Nucleicultrix amoebiphila 1 1509244 429 0 1 family 44746 no rank 1 204454 429 0 0 429 86106 species 1 endosymbiont of Acanthamoeba sp. UWC8 56155 0 345 1 order Rhizobiales 211 356 family Bartonellaceae 18 772 9266 0 1 16 0 183 1 9250 773 genus 17 Bartonella 388640 species Bartonella australis 1 0 293 species 1 Bartonella grahamii 33045 533 0 562 0 species 1 Bartonella apis 1686310 33047 1 Bartonella vinsonii species 0 535 774 species 1 Bartonella bacilliformis 0 642 0 500 85701 1 Bartonella tribocorum species species Bartonella quintana 1 803 499 0 1318743 1 Bartonella ancashensis species 0 558 6 no rank 2645622 3788 0 515256 species Bartonella sp. 1-1C 1 0 636 1933904 Bartonella sp. WD16.2 1 species 0 629 678 0 species 1 Bartonella sp. Raccoon60 1933912 1933906 Bartonella sp. JB15 1 species 0 588 670 0 1 Bartonella sp. A1379B species 1933910 587 0 Bartonella sp. JB63 1 species 1933907 596 0 species 1 Bartonella clarridgeiae 56426 0 561 38323 Bartonella henselae 1 species 2107 0 1 11 Brucellaceae 20 family 118882 0 327 1 869 234 Brucella 14 genus 1 Brucella ceti species 120577 29 0 29 0 1 Brucella melitensis species 29459 Brucella microti 1 species 444163 12 0 0 229 2632610 4 no rank 1885919 species Brucella sp. 141012304 1 0 73 0 64 1844051 Brucella sp. 09RB8910 1 species 75 0 species Brucella sp. 09RB8471 1 1149952 0 17 1891098 Brucella sp. 2002734562 1 species 29461 species Brucella suis 1 0 56 0 34 120576 species Brucella pinnipedialis 1 17 0 species Brucella ovis 1 236 0 63 981386 1 Brucella vulpis species Brucella abortus 1 species 235 36 0 37 0 1 Brucella canis species 36855 1227 0 1 23 genus Ochrobactrum 5 528 394 0 species Ochrobactrum pituitosum 1 571256 419475 species 1 Ochrobactrum pseudogrignonense 0 314 0 262 271865 Ochrobactrum sp. A44 1 species 234 0 1 Ochrobactrum anthropi species 529 7 Xanthobacteraceae family 335928 1198 0 11 1 6 genus 2 Azorhizobium 0 8 1 341 333 0 1 Azorhizobium caulinodans species 7 genus Xanthobacter 2 279 463 0 8 1 455 0 1 Xanthobacter autotrophicus species 280 152053 Starkeya 2 genus 0 12 1 383 371 0 Starkeya novella 1 species 921 41294 26 Bradyrhizobiaceae family 0 1 83 9348 0 7 1 276 1649510 Variibacter 2 genus 0 269 1333996 Variibacter gotjawalensis 1 species 391 0 5 1 3 Nitrobacter genus 911 0 166 913 Nitrobacter winogradskyi 1 species 1 Nitrobacter hamburgensis species 912 220 0 4560 161 0 1 genus 11 Bradyrhizobium 374 2302 0 6 no rank 2631580 442 0 Bradyrhizobium sp. SK17 1 species 2057741 0 317 115808 Bradyrhizobium sp. ORS 285 1 species 396 0 Bradyrhizobium sp. ORS 278 1 species 114615 393 0 species 1 Bradyrhizobium sp. BTAi1 288000 0 375 1223566 species 1 Bradyrhizobium sp. CCGE-LA001 0 379 376 1 Bradyrhizobium sp. species 0 435 44255 1 Bradyrhizobium oligotrophicum species 1 Bradyrhizobium japonicum species 375 598 0 0 435 1274631 species 1 Bradyrhizobium icense 1355477 species Bradyrhizobium diazoefficiens 1 0 629 0 1 25 2166 1073 2 Rhodopseudomonas genus Rhodopseudomonas palustris 1 species 1076 2141 0 85413 genus 5 Bosea 44 0 1 1606 416 0 species Bosea vaviloviae 1 1526658 no rank 3 2653178 1146 0 0 431 1842539 1 Bosea sp. RAC05 species 392 0 1 Bosea sp. AS-1 species 2015316 1 Bosea sp. PAMC 26642 species 1792307 323 0 40136 genus Oligotropha 2 0 2 1 266 Oligotropha carboxidovorans 1 species 40137 264 0 82115 family 54 Rhizobiaceae 120 0 1 15664 2 Shinella genus 323620 408 0 1 1 1 no rank 2643062 407 0 407 0 Shinella sp. HZN7 1 species 879274 227290 35 no rank 0 9414 0 1 1 429 1525371 genus 2 Neorhizobium 399 species 1 Neorhizobium galegae 0 428 6503 0 468 1 26 Rhizobium genus 379 349 0 1 Rhizobium gallicum species 56730 2613769 no rank 20 0 2639 1 Rhizobium sp. ACO-34A species 1571470 256 0 0 2 1703960 species 1 Rhizobium sp. N113 1981173 species Rhizobium sp. NXC14 1 0 187 1703965 species Rhizobium sp. N6212 1 0 2 species 1 Rhizobium sp. N621 1703964 2 0 2028343 species Rhizobium sp. 10195 1 0 257 2020311 1 Rhizobium sp. Kim5 species 0 202 0 4 1703962 Rhizobium sp. N1341 1 species 153 0 species Rhizobium sp. Y9 1 1914541 170 0 species Rhizobium sp. S41 1 1869170 species 1 Rhizobium sp. NXC24 2048897 236 0 1 Rhizobium sp. IE4771 species 1301032 201 0 0 209 2020312 Rhizobium sp. CIAT894 1 species 198 0 species 1 Rhizobium sp. N324 1703969 1703967 species 1 Rhizobium sp. N741 0 2 Rhizobium sp. IRBG74 1 species 424182 195 0 70 0 species 1 Rhizobium sp. TAL182 2020313 0 45 1703966 species 1 Rhizobium sp. N731 0 45 1703961 1 Rhizobium sp. N1314 species 0 203 1125847 1 Rhizobium sp. NT-26 species 29449 1 Rhizobium etli species 0 792 194 0 species Rhizobium tropici 1 398 494 0 species 1 Rhizobium phaseoli 396 0 1567 384 Rhizobium leguminosarum 1 species 2482 31 0 1 7 Agrobacterium genus 357 1183400 species group 2 0 1483 1 Agrobacterium fabrum species 1176649 230 0 0 1253 358 Agrobacterium tumefaciens 1 species 223 0 species Agrobacterium rhizogenes 1 359 no rank 2 2632611 483 0 1842536 species Agrobacterium sp. RAC06 1 0 279 861208 species 1 Agrobacterium sp. H13-3 0 204 0 262 373 species Agrobacterium vitis 1 34019 Liberibacter 6 genus 0 58 1 2450 Candidatus Liberibacter americanus 1 species 309868 606 0 1 Liberibacter crescens species 1273132 576 0 0 383 34020 species 1 Candidatus Liberibacter africanus species 1 Candidatus Liberibacter solanacearum 556287 414 0 34021 1 Candidatus Liberibacter asiaticus species 0 413 no rank 10 227292 3272 0 53 0 1 2693 28105 genus Sinorhizobium 7 species Sinorhizobium medicae 1 110321 284 0 Sinorhizobium americanum 1 species 194963 282 0 species group 1 663276 779 0 380 species 1 Sinorhizobium fredii 0 779 no rank 2 2613772 652 0 0 345 1842534 species Sinorhizobium sp. RAC02 1 794846 1 Sinorhizobium sp. CCBAU 05631 species 0 307 643 0 species Sinorhizobium meliloti 1 382 106591 3 Ensifer genus 0 1 1 579 245 0 1 Ensifer sojae species 716925 106592 species Ensifer adhaerens 1 0 333 415 0 2 1 family 3 Rhodobiaceae 119043 2 Parvibaculum genus 256616 413 0 11 1 256618 species Parvibaculum lavamentivorans 1 0 402 1002 0 6 no rank 119042 1734920 2 Pseudorhodoplanes genus 1 0 4 309 species 1 Pseudorhodoplanes sinuspersici 1235591 305 0 genus Methyloceanibacter 2 1484898 308 0 14 1 0 294 1384459 species 1 Methyloceanibacter caenitepidi 0 11 1 385 1572860 Hartmannibacter 2 genus species 1 Hartmannibacter diazotrophicus 1482074 374 0 255475 Aurantimonadaceae 7 family 0 2 1 1227 293088 genus 4 Martelella 0 33 1 923 0 247 1486262 species 1 Martelella endophytica 291 0 no rank 1 2629616 0 291 686597 species 1 Martelella sp. AD-3 293089 Martelella mediterranea 1 species 0 352 0 1 10 302 414371 Aureimonas 2 genus no rank 1 2615206 292 0 0 292 1349819 species Aureimonas sp. AU20 1 804 5 0 1 family 6 Methylocystaceae 31993 genus Methylocystis 3 133 456 1 0 21 223 0 species Methylocystis bryophila 1 655015 212 0 1 no rank 2625913 0 212 187303 Methylocystis sp. SC2 1 species 0 1 9 343 425 2 Methylosinus genus species 1 Methylosinus trichosporium 426 334 0 0 1 1 594 45404 family 5 Beijerinckiaceae 332 1 0 12 2 Beijerinckia genus 532 533 species Beijerinckia indica 1 0 320 0 1 13 261 120652 genus Methylocella 2 248 0 species Methylocella silvestris 1 199596 family Hyphomicrobiaceae 19 45401 3130 39 0 1 genus 2 Filomicrobium 119044 220 2 0 1 218 0 species Candidatus Filomicrobium marinum 1 1608628 29407 2 Rhodoplanes genus 0 12 1 392 380 0 1 no rank 2619116 species Rhodoplanes sp. Z2-YC6860 1 674703 380 0 genus 2 Pelagibacterium 1082930 208 0 2 1 206 0 species 1 Pelagibacterium halotolerans 531813 1 0 21 920 46913 Devosia 4 genus 899 0 3 no rank 196773 species Devosia sp. I507 1 2083786 213 0 Devosia sp. H5989 1 species 1643450 308 0 378 0 species 1 Devosia sp. A16 1736675 1068 2 Rhodomicrobium genus 0 1 5 234 1069 species 1 Rhodomicrobium vannielii 0 229 0 7 1 306 59282 2 Blastochloris genus 0 299 1079 species 1 Blastochloris viridis 81 genus 4 Hyphomicrobium 0 38 1 811 0 285 53399 1 Hyphomicrobium denitrificans species 219 0 species 1 Hyphomicrobium nitrativorans 1427356 no rank 1 2619925 269 0 0 269 717785 1 Hyphomicrobium sp. MC1 species 69277 family Phyllobacteriaceae 20 0 27 1 5012 genus Hoeflea 2 274591 378 6 0 1 2614931 1 no rank 0 372 372 0 species 1 Hoeflea sp. IMCC20628 1620421 2 Aminobacter genus 31988 391 0 15 1 species 1 Aminobacter aminovorans 83263 376 0 genus 2 Phyllobacterium 28100 302 1 0 4 1867719 1 Phyllobacterium zundukense species 0 298 294 1 0 3 Nitratireductor 2 genus 245876 species Nitratireductor basaltis 1 472175 291 0 0 1 3 210 449972 genus 2 Chelativorans 2643807 no rank 1 0 207 Chelativorans sp. BNC1 1 species 266779 207 0 0 104 1 3410 68287 genus 9 Mesorhizobium 0 379 2066070 species Mesorhizobium japonicum 1 1670800 species 1 Mesorhizobium sp. B7 0 406 Mesorhizobium loti 1 species 381 450 0 39645 Mesorhizobium ciceri 1 species 0 524 344 0 1 Mesorhizobium australicum species 536018 0 345 593909 species 1 Mesorhizobium opportunistum 457 0 no rank 1 325217 species Mesorhizobium sp. WSM1497 1 278153 457 0 401 0 1 Mesorhizobium amorphae species 71433 0 5 1 768 2036754 4 Chelatococcaceae family genus 3 Chelatococcus 28209 763 0 1 34 2638111 1 no rank 0 414 0 414 1702325 species 1 Chelatococcus sp. CO-6 315 0 species 1 Chelatococcus daeguensis 444444 family 15 Methylobacteriaceae 119045 5275 0 27 1 2986 0 144 1 genus 9 Methylobacterium 407 no rank 3 2615210 1065 0 1 Methylobacterium sp. 4-46 species 426117 489 0 0 245 925818 1 Methylobacterium sp. AMS5 species 331 0 Methylobacterium sp. C1 1 species 1479019 367 0 species Methylobacterium radiotolerans 1 31998 427 0 Methylobacterium aquaticum 1 species 270351 0 292 418223 species Methylobacterium phyllosphaerae 1 Methylobacterium nodulans 1 species 114616 395 0 296 0 species 1 Methylobacterium oryzae 334852 0 1889 2282523 genus 3 0 1214 408 species 1 Methylobacterium extorquens 211 0 Methylobacterium zatmanii 1 species 29429 0 464 223967 Methylobacterium populi 1 species 373 0 17 1 genus 2 Microvirga 186650 0 356 1882682 1 Microvirga ossetica species order 91 Rhodobacterales 204455 22776 0 90 1 Rhodobacteraceae 90 family 31989 22686 0 365 1 genus 2 263377 812 0 436 0 1 Thiobacimonas profunda species 1229727 376 0 no rank 1 2640570 0 376 1792508 species 1 Yangia sp. CCB-MM3 1753 1 0 17 Rhodobacter 5 genus 1060 0 661 196779 2 no rank 2033869 1 Rhodobacter sp. CZR27 species 0 326 335 0 species 1 Rhodobacter sp. LPB0142 1850250 0 801 1063 species Rhodobacter sphaeroides 1 1061 species 1 Rhodobacter capsulatus 0 274 265 Paracoccus 9 genus 1 0 48 2636 0 372 266 species 1 Paracoccus denitrificans 0 265 1945662 Paracoccus contaminans 1 species 415 0 species 1 Paracoccus yeei 147645 species Paracoccus sp. CBA4604 1 2065379 303 0 0 330 246570 1 no rank 330 0 species 1 Paracoccus sp. BM15 1529068 species Paracoccus aminovorans 1 34004 302 0 34003 1 Paracoccus aminophilus species 0 265 1 Paracoccus zhejiangensis species 1077935 336 0 2 Roseibacterium genus 159345 374 0 3 1 371 0 species Roseibacterium elongatum 1 159346 245186 genus Loktanella 1 0 1 436357 genus 1 Thalassococcus 0 1 97050 genus Ruegeria 3 4 0 1 752 0 284 2625375 1 no rank 0 284 292414 Ruegeria sp. TM1040 1 species 464 0 1 Ruegeria pomeroyi species 89184 478070 genus Labrenzia 4 0 42 1 1136 370 0 species 1 Labrenzia aggregata 187304 2648686 2 no rank 0 724 354 0 species Labrenzia sp. CP4 1 1674922 370 0 species 1 Labrenzia sp. VG12 2021862 0 4 1 340 74032 Antarctobacter 2 genus 336 0 Antarctobacter heliothermus 1 species 74033 genus 2 Planktomarina 1284657 370 0 1 1 Planktomarina temperata 1 species 1284658 369 0 1 0 9 830 53945 Octadecabacter 4 genus 0 218 1458307 species 1 Octadecabacter temperatus 332 0 Octadecabacter antarcticus 1 species 1217908 Octadecabacter arcticus 1 species 53946 271 0 299 0 1 genus 1649279 species Ruegeria mobilis 1 379347 299 0 360528 genus 2 Pelagibaca 0 3 1 435 0 432 1250539 1 Pelagibaca abyssi species 2495 0 1 25 Phaeobacter 5 genus 302485 1844006 Phaeobacter porticola 1 species 0 249 656 0 1 Phaeobacter gallaeciensis species 60890 221822 species Phaeobacter inhibens 1 0 957 0 608 1580596 1 Phaeobacter piscinae species 34008 genus Rhodovulum 4 0 1 29 1273 Rhodovulum sulfidophilum 1 species 35806 565 0 2 no rank 2631432 679 0 308754 species Rhodovulum sp. MB263 1 0 367 1564506 1 Rhodovulum sp. P5 species 0 312 334 0 genus 1 1609958 1 no rank 2643318 334 0 0 334 1609966 1 Confluentimicrobium sp. EMB200-NS6 species 92944 genus 3 Ketogulonicigenium 0 1 5 437 92947 species 1 Ketogulonicigenium robustum 0 201 231 0 Ketogulonicigenium vulgare 1 species 92945 299261 Tateyamaria 2 genus 0 3 1 353 350 0 species 1 Tateyamaria omphalii 299262 genus 1 188905 295 0 no rank 1 2645469 295 0 290400 species Jannaschia sp. CCS1 1 0 295 Dinoroseobacter 2 genus 309512 384 0 1 1 215813 1 Dinoroseobacter shibae species 0 383 0 1 20 391 227873 Pannonibacter 2 genus species 1 Pannonibacter phragmitetus 121719 371 0 367771 2 Marinovum genus 0 4 1 484 1 Marinovum algicola species 42444 480 0 1 genus 191028 360 0 Leisingera methylohalidivorans 1 species 133924 360 0 0 4 1 414 58842 genus Sagittula 2 2624628 no rank 1 0 410 410 0 1 Sagittula sp. P11 species 2009329 5 Celeribacter genus 875170 1331 0 1 12 1411902 1 Celeribacter manganoxidans species 0 392 0 296 1758178 1 Celeribacter ethanolicus species 414 0 species Celeribacter indicus 1 1208324 1397108 1 Celeribacter marinus species 0 217 285107 genus 2 Thioclava 0 1 1 283 0 282 1915078 1 Thioclava nitratireducens species 119541 Rhodobaca 2 genus 0 1 2 289 species Rhodobaca barguzinensis 1 441209 287 0 297 0 1 genus 2211641 297 0 1 Loktanella vestfoldensis species 245188 1759396 2 Marivivens genus 0 1 1 194 193 0 1 no rank 2622455 193 0 species Marivivens sp. JLT3646 1 1920883 1097466 Defluviimonas 2 genus 7 0 1 412 0 405 1335048 species 1 Defluviimonas alba 3 Sulfitobacter genus 60136 788 0 4 1 375 0 species 1 Sulfitobacter pseudonitzschiae 1402135 196795 no rank 1 0 409 species 1 Sulfitobacter sp. AM1-D1 1917485 409 0 1 0 1 285 74030 genus 2 Roseovarius 215743 species Roseovarius mucosus 1 0 284 1579315 2 Halocynthiibacter genus 0 2 1 300 298 0 1 Halocynthiibacter arcticus species 1579316 no rank 2 58840 496 0 species 1 Rhodobacteraceae bacterium 1904441 183 0 313 0 Rhodobacteraceae bacterium QY30 1 species 2033435 genus 3 Roseobacter 2433 687 0 3 1 2434 species 1 Roseobacter denitrificans 0 368 0 316 42443 Roseobacter litoralis 1 species 0 668 1807140 class 6 order 6 Acidithiobacillales 225057 668 0 16 1 0 24 1 652 225058 family 5 Acidithiobacillaceae 4 Acidithiobacillus genus 119977 628 1 0 16 181 0 Acidithiobacillus ferrooxidans 1 species 920 1 Acidithiobacillus caldus species 33059 223 0 208 0 1 Acidithiobacillus ferrivorans species 160808 1777 3 0 1 Oligoflexia 12 class 1553900 929 0 4 1 6 Bacteriovoracales order 2024979 2 family 263369 268 0 Bacteriovorax 2 genus 146784 268 3 0 1 265 0 Bacteriovorax stolpii 1 species 960 family Halobacteriovoraceae 3 1652132 657 0 2 1 0 1 1 655 1652133 genus Halobacteriovorax 2 0 654 97084 Halobacteriovorax marinus 1 species 5 Bdellovibrionales order 213481 845 0 2 1 1 0 1 843 213483 4 Bdellovibrionaceae family 0 1 7 842 958 genus 3 Bdellovibrio 0 256 453816 1 Bdellovibrio exovorus species 0 579 959 1 Bdellovibrio bacteriovorus species 28216 Betaproteobacteria 341 class 0 1 93 88873 5019 1 0 32 Nitrosomonadales 40 order 32003 1807 20 0 1 Methylophilaceae 13 family 32011 684 0 3 1 3 Candidatus Methylopumilus genus 1679002 0 169 1581680 Candidatus Methylopumilus turicensis 1 species 1581557 1 Candidatus Methylopumilus planktonicus species 0 512 152 0 1 genus 404 152 0 1 Methylobacillus flagellatus species 405 359407 3 Methylotenera genus 0 1 3 453 1055487 1 Methylotenera versatilis species 0 265 185 0 species 1 Methylotenera mobilis 359408 81682 genus Methylovorus 3 1 0 22 316 2634027 1 no rank 0 144 887061 species 1 Methylovorus sp. MP688 0 144 266009 species 1 Methylovorus glucosotrophus 0 150 Methylophilus 2 genus 16 182 0 4 1 2630143 1 no rank 0 178 178 0 species Methylophilus sp. TWE2 1 1662285 family 11 Nitrosomonadaceae 206379 1951 11 0 1 35798 genus 3 0 340 1 Nitrosospira lacus species 1288494 153 0 1 Nitrosospira multiformis species 1231 97 0 1 Nitrosospira briensis species 35799 90 0 1600 0 1 9 Nitrosomonas 7 genus 914 0 153 915 1 Nitrosomonas europaea species 44574 species Nitrosomonas communis 1 0 331 no rank 2 2609265 657 0 species Nitrosomonas sp. AL212 1 153948 418 0 0 239 261292 species Nitrosomonas sp. Is79A3 1 0 205 916 species 1 Nitrosomonas eutropha 0 245 44577 Nitrosomonas ureae 1 species 0 326 2772226 2 family 1 genus 935200 182 0 Sulfuricella denitrificans 1 species 649841 182 0 genus 1 1778653 144 0 2637784 1 no rank 0 144 1 Sulfuriferula sp. AH1 species 1985873 144 0 6 0 1 196 2008790 family 3 Thiobacillaceae 190 0 6 1 genus Thiobacillus 2 919 36861 species 1 Thiobacillus denitrificans 0 184 7 0 1 423 2008793 Sterolibacteriaceae 5 family 2 Methyloversatilis genus 378210 190 0 2 1 2639971 no rank 1 0 188 188 0 species Methyloversatilis sp. RAC08 1 1842540 226 0 4 1 genus Sulfuritalea 2 1054211 0 222 748811 species Sulfuritalea hydrogenivorans 1 284 8 0 1 family Gallionellaceae 5 90627 140 0 2 1 genus Gallionella 2 96 138 0 1 Gallionella capsiferriformans species 370405 6 0 1 136 314343 2 Sideroxydans genus 130 0 1 Sideroxydans lithotrophicus species 63745 0 634 1 71804 80840 230 Burkholderiales order 0 134 1 13414 80864 Comamonadaceae 56 family genus 5 Delftia 80865 1460 0 44 1 180282 1 Delftia tsuruhatensis species 0 304 2 no rank 2613839 758 0 species Delftia sp. Cs1-4 1 742013 415 0 343 0 species 1 Delftia sp. HK171 1920191 species 1 Delftia acidovorans 80866 354 0 5 0 1 1174 52972 Polaromonas 3 genus 0 314 216465 species 1 Polaromonas naphthalenivorans 0 855 2638319 1 no rank 296591 species Polaromonas sp. JS666 1 0 855 genus 1 1436289 153 0 153 0 1 Candidatus Symbiobacter mobilis species 1436290 174951 2 Ramlibacter genus 1 0 8 566 558 0 1 Ramlibacter tataouinensis species 94132 425 0 1 5 genus Ottowia 3 219181 2645081 no rank 1 0 187 1658672 1 Ottowia sp. oral taxon 894 species 0 187 species 1 Ottowia sp. KADR8-3 2109914 233 0 12916 genus 9 Acidovorax 0 1 76 1763 721785 1 Acidovorax ebreus species 0 167 0 255 80867 Acidovorax avenae 1 species 145 0 Acidovorax sp. NA3 1 species 553814 2684926 no rank 4 0 859 0 169 1842533 Acidovorax sp. RAC01 1 species 291 0 1 Acidovorax sp. T1 species 1858609 1 Acidovorax sp. JS42 species 232721 182 0 217 0 species 1 Acidovorax sp. KKS102 358220 80869 species Acidovorax citrulli 1 0 261 Rhodoferax 5 genus 28065 830 0 8 1 1 Rhodoferax koreense species 1842727 286 0 species Rhodoferax ferrireducens 1 192843 160 0 0 188 81479 species 1 Rhodoferax antarcticus 188 0 species Rhodoferax saidenbachensis 1 1484693 genus 1 364316 472 0 472 0 species 1 Verminephrobacter eiseniae 364317 201096 2 Alicycliphilus genus 0 6 1 274 268 0 1 Alicycliphilus denitrificans species 179636 312 0 1 3 genus 3 Limnohabitans 665874 0 309 2626134 no rank 2 0 174 1678128 Limnohabitans sp. 63ED37-2 1 species 135 0 1 Limnohabitans sp. 103DPR2 species 1678129 1225 0 6 1 Comamonas 4 genus 283 285 1 Comamonas testosteroni species 0 472 225992 1 Comamonas kerstersii species 0 266 1082851 species 1 Comamonas serinivorans 0 481 1649468 2 Melaminivora genus 0 2 1 210 208 0 1 no rank 2641902 208 0 species 1 Melaminivora sp. SC2-9 2109913 34072 5 Variovorax genus 0 37 1 2653 436515 1 Variovorax boronicumulans species 0 384 0 751 663243 2 no rank 0 311 1795631 species Variovorax sp. PAMC 28711 1 2126319 species Variovorax sp. PMC12 1 0 440 34073 species 1 Variovorax paradoxus 0 1481 213 0 1 4 genus Diaphorobacter 2 238749 209 0 species 1 Diaphorobacter polyhydroxybutyrativorans 1546149 0 204 2678886 1 genus 0 204 2116657 1 Melaminivora sp. SC2-7 species 170 0 genus 1 352450 0 170 2109915 1 Simplicispira sp. SC1-8 species 796 0 7 1 genus Hydrogenophaga 4 47420 525 0 no rank 2 2610897 0 278 795665 species 1 Hydrogenophaga sp. PBC 1842537 Hydrogenophaga sp. RAC07 1 species 0 247 264 0 species Hydrogenophaga crassostreae 1 1763535 0 380 2490452 2 genus 1 Comamonadaceae bacterium B1 species 1458426 200 0 180 0 species Comamonadaceae bacterium A1 1 1458425 28 Oxalobacteraceae family 75682 6213 41 0 1 1571 1 0 30 genus Massilia 6 149698 species 1 Massilia sp. ZMN-3 2072590 312 0 2045208 species 1 Massilia sp. B2 0 296 2609279 2 no rank 0 601 species 1 Massilia sp. WG5 1707785 331 0 0 270 1678028 species Massilia sp. NR 4-1 1 species 1 Massilia putida 1141883 332 0 29580 7 Janthinobacterium genus 0 29 1 1543 species 1 Janthinobacterium agaricidamnosum 55508 272 0 940 0 4 no rank 2610881 Janthinobacterium sp. LM6 1 species 1938606 279 0 375286 Janthinobacterium sp. Marseille 1 species 0 171 0 264 1644131 species 1 Janthinobacterium sp. 1_2014MBL_MicDiv 226 0 1 Janthinobacterium sp. B9-8 species 1236179 302 0 species Janthinobacterium svalbardensis 1 368607 Herbaspirillum 6 genus 963 1630 0 35 1 92645 1 Herbaspirillum frisingense species 0 314 964 species Herbaspirillum seropedicae 1 0 388 1 no rank 2624150 232 0 2025949 1 Herbaspirillum sp. meg3 species 0 232 341045 1 Herbaspirillum hiltneri species 0 439 0 222 80842 species 1 Herbaspirillum rubrisubalbicans 3 Herminiimonas genus 303379 294 1 0 1 0 168 1809410 Herminiimonas arsenitoxidans 1 species 0 125 204773 species 1 Herminiimonas arsenicoxydans 0 1 29 992 202907 Collimonas 4 genus 1 Collimonas pratensis species 279113 255 0 0 309 158899 species 1 Collimonas fungivorans 399 0 species 1 Collimonas arenae 279058 846 1 genus 0 142 Oxalobacter formigenes 1 species 847 142 0 0 4028 224471 no rank 17 0 1 9 389 28067 Rubrivivax 2 genus species 1 Rubrivivax gelatinosus 28068 380 0 318147 genus 2 Paucibacter 0 1 3 307 0 304 2642959 1 no rank 0 304 1768242 1 Paucibacter sp. KCTC 42545 species 88 genus 2 Leptothrix 1 0 7 371 34029 Leptothrix cholodnii 1 species 0 364 8 0 1 345 212743 genus 2 Rhizobacter 337 0 1 Rhizobacter gummiphilus species 946333 Roseateles 2 genus 93681 1073 0 11 1 0 1062 76731 Roseateles depolymerans 1 species 423 0 12 1 Mitsuaria 2 genus 65047 no rank 1 2648776 411 0 411 0 species 1 Mitsuaria sp. 7 1658665 0 4 1 320 32012 genus 2 Thiomonas 316 0 species 1 Thiomonas intermedia 926 316612 2 Methylibium genus 0 11 1 306 105560 species Methylibium petroleiphilum 1 0 295 0 494 413882 species [Polyangium] brachysporum 1 319 0 2 no rank 80841 0 158 1834205 species Burkholderiales bacterium YL45 1 0 161 1469502 1 Burkholderiales bacterium GJ-E10 species 0 163 1 36984 119060 84 Burkholderiaceae family Pandoraea 10 genus 93217 2932 0 1 46 405 0 1 Pandoraea pnomenusa species 93220 1 Pandoraea pulmonicola species 93221 686 0 0 305 573737 species Pandoraea oxalativorans 1 231 0 species Pandoraea faecigallinarum 1 656179 0 210 445709 species Pandoraea thiooxydans 1 Pandoraea vervacti 1 species 656178 220 0 214 0 1 Pandoraea sputorum species 93222 93218 species 1 Pandoraea apista 0 243 0 372 93219 species Pandoraea norimbergensis 1 genus Cupriavidus 9 106589 4290 0 92 1 500 0 Cupriavidus sp. USMAA1020 1 species 367825 0 710 119219 species Cupriavidus metallidurans 1 species Cupriavidus pinatubonensis 1 248026 300 0 68895 Cupriavidus basilensis 1 species 0 619 0 1178 2640874 2 no rank 545 0 1 Cupriavidus sp. USMAHM13 species 1389192 633 0 1 Cupriavidus sp. USMAA2-4 species 876364 species 1 Cupriavidus gilardii 82541 367 0 0 524 106590 Cupriavidus necator 1 species genus 1 1827195 365 0 758793 species 1 Burkholderia sp. RPE64 0 365 1822464 genus Paraburkholderia 12 0 59 1 4104 349 0 no rank 1 2615204 1926494 1 Paraburkholderia sp. SOS3 species 0 349 277 0 species Paraburkholderia fungorum 1 134537 0 344 2026199 1 Paraburkholderia aromaticivorans species 0 327 948107 species Paraburkholderia sprentiae 1 36873 species Paraburkholderia xenovorans 1 0 392 0 463 261302 species Paraburkholderia phytofirmans 1 0 643 75105 Paraburkholderia caribensis 1 species Paraburkholderia terrae 1 species 311230 300 0 148447 species 1 Paraburkholderia phymatum 0 318 358 0 species Paraburkholderia hospita 1 169430 252970 Paraburkholderia phenoliruptrix 1 species 0 274 21736 0 646 1 genus Burkholderia 41 32008 species group 19 87882 9869 0 0 929 101571 species Burkholderia ubonensis 1 310 0 species Burkholderia stagnalis 1 1503054 292 Burkholderia cepacia 1 species 0 1562 0 905 482957 Burkholderia lata 1 species 232 0 1 Burkholderia territorii species 1503055 0 292 488731 species 1 Burkholderia seminalis 95486 Burkholderia cenocepacia 1 species 0 1313 0 616 87883 Burkholderia multivorans 1 species 0 423 152480 species Burkholderia ambifaria 1 Burkholderia diffusa 1 species 488732 224 0 Burkholderia metallica 1 species 488729 264 0 229 0 1 Burkholderia pyrrocinia species 60550 [Pseudomonas] mesoacidophila 1 species 265293 284 0 431 0 1 Burkholderia latens species 488446 0 338 488447 species Burkholderia contaminans 1 1207504 1 Burkholderia pseudomultivorans species 0 254 464 0 Burkholderia stabilis 1 species 95485 Burkholderia vietnamiensis 1 species 60552 562 0 152500 1 Burkholderia dolosa species 0 237 species Burkholderia gladioli 1 28095 680 0 species group 7 111527 6320 0 0 344 1637837 Burkholderia sp. MSMB0266 1 species species 1 Burkholderia sp. MSMB0852 1637841 494 0 878 0 Burkholderia thailandensis 1 species 57975 species 1 Burkholderia pseudomallei 28450 3132 0 1637831 species 1 Burkholderia sp. MSMB617WGS 0 386 1 Burkholderia oklahomensis species 342113 482 0 604 0 Burkholderia mallei 1 species 13373 41899 species Burkholderia plantarii 1 0 417 11 no rank 2613784 3110 0 640512 1 Burkholderia sp. CCGE1003 species 0 316 0 227 1795043 Burkholderia sp. PAMC 26561 1 species 0 222 1795874 species 1 Burkholderia sp. PAMC 28687 0 240 1740163 species 1 Burkholderia sp. Bp7605 1678678 Burkholderia sp. HB1 1 species 0 294 640510 species Burkholderia sp. CCGE1001 1 0 272 species 1 Burkholderia sp. Bp5365 1740162 229 0 1 Burkholderia sp. RPE67 species 758796 394 0 species Burkholderia sp. YI23 1 1097668 411 0 416344 Burkholderia sp. KJ006 1 species 0 244 species 1 Burkholderia sp. 2002721687 1468409 261 0 Burkholderia glumae 1 species 337 694 0 0 1 12 735 44013 Polynucleobacter 4 genus 233 0 species 1 Polynucleobacter duraquae 1835254 species 1 Polynucleobacter asymbioticus 576611 317 0 0 173 576610 species Polynucleobacter necessarius 1 0 149 2571159 1 genus species 1 Paraburkholderia rhizoxinica 412963 149 0 0 21 1 2510 48736 genus 5 Ralstonia 105219 1 Ralstonia mannitolilytica species 0 397 190721 1 Ralstonia insidiosa species 0 290 1 Ralstonia solanacearum species 305 1272 0 329 species 1 Ralstonia pickettii 0 530 506 family Alcaligenaceae 42 63 0 1 10212 517 genus 17 Bordetella 0 1 127 4218 species Bordetella bronchialis 1 463025 255 0 0 197 463040 species 1 Bordetella genomosp. 13 218 0 species Bordetella petrii 1 94624 631 0 1 Bordetella bronchiseptica species 518 2630031 no rank 1 0 204 1697043 1 Bordetella sp. H567 species 0 204 214 0 species 1 Bordetella genomosp. 9 1416803 305 0 species 1 Bordetella pertussis 520 463014 Bordetella flabilis 1 species 0 203 0 188 123899 1 Bordetella trematum species 0 240 1416806 1 Bordetella genomosp. 8 species 0 224 1331258 species 1 Bordetella pseudohinzii 0 137 35814 Bordetella holmesii 1 species species 1 Bordetella genomosp. 6 463024 332 0 521 species Bordetella avium 1 0 144 1 Bordetella hinzii species 103855 254 0 519 species 1 Bordetella parapertussis 0 345 0 1 5 698 29574 genus Taylorella 3 29575 species Taylorella equigenitalis 1 0 377 84590 species Taylorella asinigenitalis 1 0 316 702 0 8 1 2 Alcaligenes genus 507 Alcaligenes faecalis 1 species 511 694 0 222 genus 6 Achromobacter 0 1 80 2904 0 632 32002 Achromobacter denitrificans 1 species 0 281 217204 Achromobacter insolitus 1 species no rank 1 2626865 259 0 259 0 1 Achromobacter sp. AONIH1 species 1758194 0 1159 85698 1 Achromobacter xylosoxidans species 493 0 species Achromobacter spanius 1 217203 227 0 genus 1 1472344 Basilea psittacipulmonis 1 species 1472345 227 0 1 0 5 228 1921582 genus Orrella 2 0 223 1851544 Orrella dioscoreae 1 species 290425 Advenella 3 genus 1 0 6 365 species Advenella kashmirensis 1 310575 157 0 species Advenella mimigardefordensis 1 302406 202 0 234 0 4 1 genus 2 Paenalcaligenes 1100891 0 230 643674 Paenalcaligenes hominis 1 species 359336 Castellaniella 2 genus 0 12 1 223 75697 species 1 Castellaniella defragrans 0 211 90243 genus 1 0 162 1 Oligella urethralis species 90245 162 0 1 0 1 188 305976 genus Pusillimonas 2 187 0 1 no rank 2640016 187 0 species Pusillimonas sp. T7-7 1 1007105 475 0 no rank 2 33809 543913 beta proteobacterium CB 1 species 0 211 0 264 1904640 species Betaproteobacteria bacterium GR16-43 1 39 0 1 3440 206389 22 Rhodocyclales order 0 47 1 2539 2008794 Zoogloeaceae 12 family Azoarcus 5 genus 12960 1128 0 19 1 2067960 Azoarcus sp. SY39 1 species 0 247 0 607 2629479 2 no rank 0 335 198107 species 1 Azoarcus sp. CIB 0 272 748247 Azoarcus sp. KH32C 1 species 0 255 418699 species 1 Azoarcus olearius 0 1 43 1364 33057 genus 6 Thauera 59405 species Thauera aromatica 1 0 219 0 258 1134435 1 Thauera humireducens species 0 585 2609274 no rank 2 358 0 Thauera sp. MZ1T 1 species 85643 0 227 2005884 Thauera sp. K11 1 species 259 0 species 1 Thauera chlorobenzoica 96773 0 17 1 663 75787 family 6 Rhodocyclaceae 146937 genus 2 Azospira 0 6 1 219 0 213 146939 species 1 Azospira oryzae 2 Aromatoleum genus 551759 261 0 1 1 551760 1 Aromatoleum aromaticum species 0 260 166 0 1 no rank 75788 1 Rhodocyclaceae bacterium species 1898103 166 0 2008795 family Azonexaceae 3 0 3 1 199 196 0 5 1 2 Dechloromonas genus 73029 0 191 259537 1 Dechloromonas aromatica species 12 no rank 119066 3059 0 414 0 2 1 genus 2 Candidatus Profftella 1381133 1 Candidatus Profftella armatura species 669502 412 0 0 60 189384 genus 1 0 60 189385 species 1 Candidatus Tremblaya princeps 1301080 genus 1 0 105 105 0 species 1 Candidatus Nasuia deltocephalinicola 1160784 33055 genus 6 Kinetoplastibacterium 0 1 14 2258 0 376 994695 species Candidatus Kinetoplastibacterium galatii 1 406 0 species Kinetoplastibacterium blastocrithidii 1 233181 0 479 33056 1 Candidatus Kinetoplastibacterium crithidii species 994692 species Candidatus Kinetoplastibacterium desouzaii 1 0 525 994696 1 Candidatus Kinetoplastibacterium oncopeltii species 0 458 genus 2 Candidatus Accumulibacter 327159 222 1 0 1 0 221 327160 species 1 Candidatus Accumulibacter phosphatis 206351 Neisseriales 34 order 1 0 45 4983 1499392 12 Chromobacteriaceae family 0 43 1 1848 no rank 4 90153 997 0 0 1 17 997 535 Chromobacterium 4 genus 399 0 Chromobacterium vaccinii 1 species 1108595 1 no rank 2641838 315 0 0 315 2059672 species Chromobacterium sp. ATCC 53434 1 0 266 536 species 1 Chromobacterium violaceum genus 2 Jeongeupia 885864 218 0 1 2 216 0 no rank 1 2619593 216 0 species Jeongeupia sp. USM3 1 1906741 185 0 4 1 Laribacter 2 genus 168470 0 181 168471 1 Laribacter hongkongensis species 568394 Pseudogulbenkiania 2 genus 0 1 9 252 no rank 1 2642558 243 0 0 243 748280 Pseudogulbenkiania sp. NH8B 1 species genus 1 187 153 0 0 153 2620219 1 no rank 153 0 species Aquaspirillum sp. LM1 1 1938604 3090 0 16 1 Neisseriaceae 21 family 481 0 1 1 200 71 2 Simonsiella genus 0 199 72 species Simonsiella muelleri 1 1 genus 1193515 286 0 1196083 Snodgrassella alvi 1 species 0 286 538 1 genus 0 127 Eikenella corrodens 1 species 539 127 0 0 423 421605 1 no rank 423 0 species Neisseriaceae bacterium DSM 100970 1 2052837 1620 1 0 42 Neisseria 12 genus 482 0 99 490 species Neisseria sicca 1 135 0 species 1 Neisseria weaveri 28091 2623750 2 no rank 0 234 655307 Neisseria sp. KEM232 1 species 0 138 1853276 Neisseria sp. 10022 1 species 0 96 149 0 species 1 Neisseria gonorrhoeae 485 443 0 species 1 Neisseria meningitidis 487 Neisseria elongata 1 species 495 93 0 1 Neisseria sp. 10023 species 1853278 84 0 1 Neisseria mucosa species 488 95 0 species Neisseria lactamica 1 486 144 0 102 0 Neisseria zoodegmatis 1 species 326523 59 3 Vitreoscilla genus 0 1 8 418 232 0 no rank 1 2627922 96942 species 1 Vitreoscilla sp. C1 0 232 178 0 1 Vitreoscilla filiformis species 63 1765 0 10 phylum 200930 class 10 Deferribacteres 68337 1765 0 3 1 1762 13 0 1 9 Deferribacterales order 191393 1749 9 0 1 family 8 Deferribacteraceae 191394 117999 genus Denitrovibrio 2 1 0 1 230 0 229 118000 species 1 Denitrovibrio acetiphilus 0 1 1 783 53572 Deferribacter 2 genus Deferribacter desulfuricans 1 species 197162 782 0 2351 2 Flexistipes genus 0 1 1 364 0 363 2352 species 1 Flexistipes sinusarabici genus 1 545865 363 0 0 363 477976 species Calditerrivibrio nitroreducens 1 3801395 0 1628 clade 1783272 67819 5 phylum 0 187 187 0 1 3 5 Fimbriimonadia class 1663419 0 5 1 184 1663425 4 Fimbriimonadales order 179 0 1 4 family Fimbriimonadaceae 3 1663426 genus 2 Fimbriimonas 1005038 175 0 1 9 0 166 1005039 species 1 Fimbriimonas ginsengisoli 171861 50 0 1 phylum Firmicutes 678 1239 84086 1 no rank 0 449 species endosymbiont 'TC1' of Trimyema compressum 1 243899 449 0 10 Erysipelotrichia class 526524 901 0 1 1 526525 Erysipelotrichales 9 order 1 0 3 900 family Erysipelotrichaceae 8 128827 897 1 0 6 3 Erysipelothrix genus 1647 357 0 1 1 175 0 species Erysipelothrix rhusiopathiae 1 1648 181 0 1 Erysipelothrix larvae species 1514105 191303 genus 2 Turicibacter 0 3 1 273 0 270 2638206 no rank 1 0 270 1712675 1 Turicibacter sp. H121 species 1 genus 1729679 106 0 106 0 Faecalibaculum rodentium 1 species 1702221 544447 1 no rank 0 155 1834207 1 Erysipelotrichaceae bacterium I46 species 0 155 10 0 1 2776 909932 class 29 Negativicutes 211 6 0 1 Acidaminococcales 5 order 1843488 909930 Acidaminococcaceae 4 family 0 2 1 205 Acidaminococcus 3 genus 904 203 0 1 1 90 0 1 Acidaminococcus intestini species 187327 0 112 905 species 1 Acidaminococcus fermentans 858 0 4 1 Veillonellales 10 order 1843489 Veillonellaceae 9 family 31977 854 0 9 1 240 0 genus 1 39948 39950 1 Dialister pneumosintes species 0 240 83 0 1 1 Negativicoccus 2 genus 909928 0 82 1702287 species Negativicoccus massiliensis 1 29465 genus Veillonella 3 0 2 1 404 0 297 29466 Veillonella parvula 1 species 248315 species Veillonella rodentium 1 0 105 118 1 0 1 2 Megasphaera genus 906 0 117 907 Megasphaera elsdenii 1 species order 13 Selenomonadales 909929 1697 0 9 1 859 0 1 1 Sporomusaceae 4 family 1843490 genus 3 Pelosinus 365348 858 0 3 1 413 0 1 no rank 2629460 Pelosinus sp. UFO1 1 species 484770 413 0 1 Pelosinus fermentans species 365349 442 0 4 0 1 829 1843491 Selenomonadaceae 8 family Selenomonas 6 genus 970 514 0 1 19 0 118 971 species 1 Selenomonas ruminantium 69823 1 Selenomonas sputigena species 0 144 0 233 2637378 3 no rank 713030 Selenomonas sp. oral taxon 136 1 species 0 87 1884263 1 Selenomonas sp. oral taxon 920 species 0 73 712538 species Selenomonas sp. oral taxon 478 1 0 73 311 0 genus 1 158846 311 0 Megamonas hypermegale 1 species 158847 1676648 class 4 0 214 order 4 Limnochordales 1676649 214 0 8 1 1676650 Limnochordaceae 3 family 0 2 1 206 1676651 genus 2 Limnochorda 12 0 1 204 1 Limnochorda pilosa species 1555112 192 0 1 no rank 33974 83 0 genus 1 1930845 83 0 0 83 1871025 species Ndongobacter massiliensis 1 1 0 11 2719 1737404 Tissierellia 15 class 1737405 Tissierellales 13 order 0 7 1 2481 554 0 family 2 2042895 554 1 0 6 genus Gottschalkia 2 1505664 1556 species 1 Gottschalkia acidurici 0 548 Peptoniphilaceae 10 family 1570339 1920 1 0 3 564 0 genus 1 543311 33033 species 1 Parvimonas micra 0 564 7 0 1 618 165779 genus 3 Anaerococcus 298 0 1 Anaerococcus mediterraneensis species 1870984 313 0 species Anaerococcus prevotii 1 33034 281 0 1 1 Peptoniphilus 2 genus 162289 no rank 1 2637196 280 0 0 280 1912856 1 Peptoniphilus sp. ING2-D1G species 0 86 1161127 genus 1 86 0 species Murdochiella vaginalis 1 1852373 Finegoldia 2 genus 150022 368 0 2 1 366 0 1 Finegoldia magna species 1260 0 227 1737407 no rank 1 1582879 1 genus 0 227 0 227 1852374 1 Ezakiella massiliensis species 63629 0 64 1 Clostridia 200 class 186801 53433 order 11 Halanaerobiales 0 1 4 2596 819 0 4 1 4 Halobacteroidaceae family 53434 0 523 42417 1 genus 42422 species 1 Halobacteroides halobius 0 523 0 1 1 292 28186 2 Acetohalobium genus 28187 Acetohalobium arabaticum 1 species 0 291 family 6 Halanaerobiaceae 972 1773 0 3 1 0 1 14 266 32636 genus Halothermothrix 2 31909 species 1 Halothermothrix orenii 0 252 1504 0 7 1 genus 3 Halanaerobium 2330 0 700 656519 species Halanaerobium hydrogeniformans 1 Halanaerobium praevalens 1 species 2331 797 0 2770089 2 order 0 385 102 0 1 family 2770093 genus 1 291988 102 0 102 0 species Thermosediminibacter oceani 1 291990 283 0 1 family 2770092 283 0 genus 1 499228 283 0 Tepidanaerobacter acetatoxydans 1 species 499229 order 2 Natranaerobiales 485256 295 0 2 1 293 0 1 family 485255 293 0 1 genus 375928 375929 species Natranaerobius thermophilus 1 0 293 7925 0 12 1 35 Thermoanaerobacterales order 68295 186814 16 Thermoanaerobacteraceae family 0 10 1 3846 129957 genus 1 0 180 180 0 1 Carboxydothermus hydrogenoformans species 129958 1 genus 249529 291 0 291 0 1 Caldanaerobacter subterraneus species 911092 0 135 1 3081 1754 genus 9 Thermoanaerobacter Thermoanaerobacter brockii 1 species 29323 341 0 108150 species Thermoanaerobacter italicus 1 0 359 2636821 2 no rank 0 836 390 0 species 1 Thermoanaerobacter sp. X514 399726 446 0 1 Thermoanaerobacter sp. X513 species 573062 0 341 496866 Thermoanaerobacter pseudethanolicus 1 species 343 0 species 1 Thermoanaerobacter mathranii 583357 species Thermoanaerobacter kivui 1 2325 322 0 0 404 46354 Thermoanaerobacter wiegelii 1 species 140458 1 genus 0 94 94 0 Thermacetogenium phaeum 1 species 85874 3 no rank 42857 190 0 1 genus 42837 83 0 0 83 42838 Ammonifex degensii 1 species Moorella 2 genus 44260 107 0 2 1 105 0 1 Moorella thermoacetica species 1525 111 1 0 1 2 Thermoanaerobacterales Family IV. Incertae Sedis family 543372 genus 1 252965 110 0 110 0 species Mahella australiensis 1 252966 2 0 1 3570 543371 family 13 Thermoanaerobacterales Family III. Incertae Sedis Thermoanaerobacterium 3 genus 28895 908 1 0 2 29329 species 1 Thermoanaerobacterium xylanolyticum 0 339 1 Thermoanaerobacterium thermosaccharolyticum species 1517 567 0 44000 Caldicellulosiruptor 9 genus 0 61 1 2660 55205 Caldicellulosiruptor owensensis 1 species 0 290 386 0 Caldicellulosiruptor saccharolyticus 1 species 44001 52766 species 1 Caldicellulosiruptor lactoaceticus 0 282 species 1 Caldicellulosiruptor kronotskyensis 413889 371 0 310 0 Caldicellulosiruptor obsidiansis 1 species 717609 1 Caldicellulosiruptor hydrothermalis species 413888 341 0 0 335 31899 species 1 Caldicellulosiruptor bescii 0 284 52765 1 Caldicellulosiruptor kristjanssonii species 386 0 4 1 Thermodesulfobiaceae 3 family 227387 227388 genus Thermodesulfobium 2 0 1 1 382 0 381 184064 Thermodesulfobium narugense 1 species 1 0 139 52364 186802 order 149 Clostridiales 873 0 13 1 family Ruminococcaceae 10 541000 0 1 1890281 genus 1 Herbivorax genus 2 Flavonifractor 946234 164 0 4 1 160 0 species 1 Flavonifractor plautii 292800 250 0 2 genus 1263 species 1 Ruminococcus bicirculans 1160721 119 0 1264 1 Ruminococcus albus species 0 131 1 genus 253238 117 0 Ethanoligenens harbinense 1 species 253239 117 0 170 0 1 genus 216851 170 0 species Faecalibacterium prausnitzii 1 853 no rank 1 552397 75 0 75 0 [Clostridium] cellulosi 1 species 29343 1 no rank 2305133 83 0 1572656 species Ruminococcaceae bacterium CPB6 1 0 83 124 0 1 4 Heliobacteriaceae 2 family 31984 2697 1 genus 0 120 35701 Heliobacterium modesticaldum 1 species 0 120 0 100 216572 family 2 0 1 1 100 459786 Oscillibacter 2 genus 0 99 351091 species 1 Oscillibacter valericigenes 41 Clostridiaceae family 31979 35594 0 56 1 0 24 1 1482 49082 genus Candidatus Arthromitus 4 no rank 3 2638829 1458 0 species Candidatus Arthromitus sp. SFB-mouse 1 49118 518 0 Candidatus Arthromitus sp. SFB-mouse-NL 1 species 1508644 519 0 0 421 1041504 1 Candidatus Arthromitus sp. SFB-rat-Yit species Geosporobacter 2 genus 390805 375 0 1 2 species Geosporobacter ferrireducens 1 1424294 373 0 genus 1 Mordavella 1981033 2 0 Clostridium 30 genus 1485 32869 0 175 1 0 767 46867 species 1 Clostridium chauvoei 0 736 1493 species Clostridium cellulovorans 1 0 635 1494 species 1 Clostridium cochlearium species 1 Clostridium estertheticum 238834 736 0 1 Clostridium aceticum species 84022 504 0 1513 species Clostridium tetani 1 0 948 29341 1 Clostridium argentinense species 0 837 84023 species 1 Clostridium autoethanogenum 0 663 7567 0 species Clostridium botulinum 1 1491 819 0 species 1 Clostridium sporogenes 1509 1561 Clostridium baratii 1 species 0 1325 1797 0 species 1 Clostridium beijerinckii 1520 1519 Clostridium tyrobutyricum 1 species 0 534 1631 0 1 Clostridium pasteurianum species 1501 1418 0 species 1 Clostridium saccharoperbutylacetonicum 36745 467 0 Clostridium formicaceticum 1 species 1497 1534 Clostridium kluyveri 1 species 0 922 994 0 1 Clostridium bornimense species 1216932 1488 Clostridium acetobutylicum 1 species 0 726 no rank 2 2614128 380 0 755731 species 1 Clostridium sp. BNL1100 0 318 62 0 1 Clostridium sp. SY8519 species 1042156 species 1 Clostridium novyi 1542 712 0 1538 species 1 Clostridium ljungdahlii 0 677 1502 Clostridium perfringens 1 species 0 1605 species Clostridium scatologenes 1 1548 1029 0 854 0 species 1 Clostridium taeniosporum 394958 0 971 217159 species 1 Clostridium carboxidivorans 0 1227 1492 1 Clostridium butyricum species 0 1213 169679 species 1 Clostridium saccharobutylicum 0 2 1 810 114627 3 Alkaliphilus genus 208226 1 Alkaliphilus metalliredigens species 0 487 species 1 Alkaliphilus oremlandii 461876 321 0 2 0 1 264 68298 Syntrophomonadaceae 5 family 77 0 3 1 Syntrophothermus 2 genus 129001 86170 species 1 Syntrophothermus lipocalidus 0 74 185 1 0 1 2 Syntrophomonas genus 862 Syntrophomonas wolfei 1 species 863 184 0 4652 0 7 1 Lachnospiraceae 23 family 186803 0 142 2719231 genus 1 142 0 species [Clostridium] saccharolyticum 1 84030 839 4 0 1 2 Cellulosilyticum genus 698776 835 0 species 1 Cellulosilyticum lentocellum 29360 0 5 1 712 1506553 Lachnoclostridium 4 genus 193 0 1 no rank 2608895 1834196 species Lachnoclostridium sp. YL32 1 0 193 0 102 1871021 1 Lachnoclostridium phocaeense species 1 Lachnoclostridium phytofermentans species 66219 412 0 2039240 genus 1 0 200 28446 Anaerotignum propionicum 1 species 0 200 0 1 1 268 207244 genus Anaerostipes 2 649756 species 1 Anaerostipes hadrus 0 267 1 genus 28050 355 0 0 355 39485 1 [Eubacterium] eligens species 229 0 1 genus 1663717 1679721 species 1 Herbinix luporum 0 229 0 354 572511 genus 2 0 223 1322 Blautia hansenii 1 species 1 no rank 2648079 131 0 1796616 Blautia sp. YL58 1 species 0 131 415 0 1 genus 2569097 [Eubacterium] hallii 1 species 39488 415 0 1 genus 841 116 0 0 116 301301 species 1 Roseburia hominis 830 genus Butyrivibrio 3 0 2 1 582 257 0 species 1 Butyrivibrio hungatei 185008 43305 Butyrivibrio proteoclasticus 1 species 0 323 137 0 1 genus 2719313 species 1 [Clostridium] bolteae 208479 137 0 0 296 186928 no rank 2 39491 1 [Eubacterium] rectale species 0 185 0 111 712991 Lachnospiraceae bacterium oral taxon 500 1 species 0 723 538999 8 no rank 0 327 543314 family 2 143393 1 [Eubacterium] sulci species 0 159 86331 1 genus 0 168 1 Mogibacterium diversum species 114527 168 0 0 106 2717089 genus 1 2086584 species Mordavella sp. Marseille-P3756 1 0 106 118 1 0 1 genus 2 Intestinimonas 1392389 117 0 species 1 Intestinimonas butyriciproducens 1297617 0 1 1 172 539000 Clostridiales Family XVII. Incertae Sedis 3 family 0 2 1 171 73918 genus 2 Thermaerobacter Thermaerobacter marianensis 1 species 73919 169 0 186806 family 5 Eubacteriaceae 4 0 1 652 0 2 1 280 33951 genus Acetobacterium 2 0 278 33952 species Acetobacterium woodii 1 1730 genus Eubacterium 2 1 0 4 368 364 0 1 Eubacterium limosum species 1736 2304686 11 family 0 1923 297 0 9 1 2 Ruminiclostridium genus 1508657 1521 species 1 [Clostridium] cellulolyticum 0 288 2304691 genus 1 0 127 127 0 1 [Clostridium] stercorarium species 1510 genus Mageeibacillus 2 1637257 99 0 1 2 97 0 species Mageeibacillus indolicus 1 884684 0 878 2304692 3 genus 1515 species Ruminiclostridium thermocellum 1 0 212 288965 species 1 [Clostridium] clariflavum 0 320 species Herbivorax saccincola 1 1677857 346 0 236752 genus 1 0 244 species Fastidiosipila sanguinis 1 236753 244 0 70 0 no rank 1 2305130 1834198 1 Ruminiclostridium sp. KB18 species 0 70 208 0 1 genus 2304693 208 0 species 1 [Clostridium] thermosuccinogenes 84032 175 0 2 family 543349 3 0 1 175 2733 genus 2 Symbiobacterium 172 0 species Symbiobacterium thermophilum 1 2734 11 Peptostreptococcaceae family 186804 3691 16 0 1 471 2 0 1 genus Acetoanaerobium 2 186831 species 1 Acetoanaerobium sticklandii 1511 469 0 1776 0 4 1 genus Clostridioides 2 1870884 Clostridioides difficile 1 species 1496 1772 0 191 2 0 1 2 Filifactor genus 44259 0 189 143361 1 Filifactor alocis species 0 258 1411023 no rank 1 2081703 1 Peptostreptococcaceae bacterium oral taxon 929 species 0 258 1849828 2 Paeniclostridium genus 0 4 1 839 species Paeniclostridium sordellii 1 1505 835 0 genus 1 1481960 140 0 0 140 1731 Peptoclostridium acidaminophilum 1 species 186807 Peptococcaceae 26 family 1 0 15 3368 197 0 genus 1 2282742 species 1 Desulfotomaculum acetoxidans 58138 197 0 genus 5 Desulfotomaculum 1562 628 6 0 1 144 0 1 Desulfotomaculum ruminis species 1564 0 135 1833852 species 1 Desulfotomaculum ferrireducens 59610 species Desulfotomaculum reducens 1 0 231 Desulfotomaculum nigrificans 1 species 1565 112 0 genus Candidatus Desulforudis 2 471826 127 1 0 4 471827 1 Candidatus Desulforudis audaxviator species 0 123 106 0 1 genus 51196 Syntrophobotulus glycolicus 1 species 51197 106 0 0 228 2282740 1 genus 102134 Desulfotomaculum gibsoniae 1 species 0 228 0 231 51514 1 genus 231 0 species 1 Dehalobacterium formicoaceticum 51515 156 0 1 genus 278993 0 156 863643 species Thermincola potens 1 302 0 1 2 genus 4 Dehalobacter 56112 81 0 species Dehalobacter restrictus 1 55583 2 no rank 2635733 219 0 110 0 Dehalobacter sp. DCA 1 species 1147129 109 0 species Dehalobacter sp. CF 1 1131462 genus 4 Desulfosporosinus 79206 668 1 0 5 0 224 79209 Desulfosporosinus meridiei 1 species Desulfosporosinus orientis 1 species 1563 216 0 0 223 885581 species Desulfosporosinus acidiphilus 1 710 0 4 1 Desulfitobacterium 5 genus 36853 1 Desulfitobacterium hafniense species 49338 166 0 183 0 Desulfitobacterium dichloroeliminans 1 species 233055 142877 Desulfitobacterium metallireducens 1 species 0 200 157 0 Desulfitobacterium dehalogenans 1 species 36854 0 86 990719 2 family 86 0 1 2 Christensenella 2 genus 990721 0 84 1805714 1 Christensenella massiliensis species 0 89 1 101040 91061 417 Bacilli class 134 0 1 69743 1385 order Bacillales 256 family Alicyclobacillaceae 8 186823 890 1 0 8 1129704 3 Kyrpidia genus 4 0 1 342 2055160 species 1 Kyrpidia sp. EA-1 0 159 179 0 1 Kyrpidia tusciae species 33943 genus Tumebacillus 3 432330 353 3 0 1 1903704 species 1 Tumebacillus avium 0 250 100 0 species 1 Tumebacillus algifaecis 1214604 0 187 29330 genus 1 0 187 405212 species Alicyclobacillus acidocaldarius 1 0 69 1 37035 186817 Bacillaceae 115 family 810 0 genus 2 2675229 Bacillus simplex 1 species 1478 625 0 0 185 264697 species Bacillus muralis 1 0 264 1055323 genus 1 species Aeribacillus pallidus 1 33936 264 0 400634 genus Lysinibacillus 5 0 9 1 2078 2636778 no rank 1 0 415 0 415 2072025 1 Lysinibacillus sp. YS11 species 1 Lysinibacillus fusiformis species 28031 345 0 918 0 Lysinibacillus sphaericus 1 species 1421 species Lysinibacillus varians 1 1145276 391 0 157 2 0 1 genus 2 Terribacillus 459532 586416 1 Terribacillus aidingensis species 0 155 0 233 1906945 1 genus 1 Parageobacillus thermoglucosidasius species 1426 233 0 0 1592 2675234 5 genus species 1 Bacillus clausii 79880 339 0 1 Bacillus krulwichiae species 199441 449 0 300825 1 Bacillus lehensis species 0 353 158 0 1 Bacillus halodurans species 86665 79885 species Bacillus pseudofirmus 1 0 293 333 2 0 1 Amphibacillus 2 genus 29331 species 1 Amphibacillus xylanus 1449 331 0 473 0 1 4 genus Fictibacillus 3 1329200 285 0 1 Fictibacillus arsenicus species 255247 184 0 species 1 Fictibacillus phosphorivorans 1221500 95 0 genus 1 351195 0 95 1230341 species 1 Salimicrobium jeotgali 689 0 genus 2 2675230 0 257 665099 species Bacillus oceanisediminis 1 1 Bacillus kochii species 859143 432 0 0 155 175304 genus 1 155 0 1 Lentibacillus amyloliquefaciens species 1472767 23634 0 1 487 genus Bacillus 58 1386 Bacillus xiamenensis 1 species 1178537 159 0 species 1 Bacillus infantis 324767 156 0 131 0 Bacillus beveridgei 1 species 632773 192 0 1 Bacillus smithii species 1479 79883 species 1 Bacillus horikoshii 0 242 species Bacillus cohnii 1 33932 493 0 species Bacillus safensis 1 561879 458 0 0 388 1413 Bacillus cellulosilyticus 1 species 1 Bacillus megaterium species 1404 1190 0 1547283 1 Bacillus weihaiensis species 0 461 269 0 1 Bacillus coagulans species 1398 1408 species 1 Bacillus pumilus 0 823 2364 0 no rank 19 185979 74 0 1 Bacillus sp. MD-5 species 2009331 1446792 species 1 Bacillus sp. Pc3 0 63 0 212 756828 1 Bacillus sp. WP8 species 67 0 species 1 Bacillus sp. JS 1127744 0 54 563169 1 Bacillus sp. SJ-10 species 94 0 Bacillus sp. H15-1 1 species 1856406 666686 1 Bacillus sp. 1NLA3E species 0 446 339 0 species Bacillus sp. IHB B 7164 1 1827146 species Bacillus sp. BH072 1 1570330 23 0 56 0 species 1 Bacillus sp. YP1 1574141 0 27 2049935 1 Bacillus sp. Lzh-5 species 0 66 1941347 species 1 Bacillus sp. 275 1628753 species Bacillus sp. LM 4-2 1 0 44 0 94 2026248 1 Bacillus sp. 1s-1 species species 1 Bacillus sp. OxB-1 98228 117 0 Bacillus sp. FJAT-14266 1 species 1837130 156 0 0 58 1774743 species Bacillus sp. SDLI1 1 0 38 1409 Bacillus sp. (in: Bacteria) 1 species species 1 Bacillus sp. X1(2014) 1565991 336 0 1 species group 1792192 193 0 293387 species Bacillus altitudinis 1 0 193 0 371 412384 Bacillus aryabhattai 1 species 0 11056 86661 10 species group species Bacillus cytotoxicus 1 580165 335 0 species Bacillus bombysepticus 1 658666 352 0 1405 species 1 Bacillus mycoides 0 1443 155322 species Bacillus toyonensis 1 0 273 species 1 Bacillus cereus 1396 3972 0 3417 0 species 1 Bacillus thuringiensis 1428 Bacillus anthracis 1 species 1392 331 0 0 933 2750818 3 no rank 430 0 species 1 Bacillus sp. FDAARGOS_235 1839798 255 0 species 1 Bacillus sp. ABP14 1892404 0 248 2053832 1 Bacillus sp. HBCD-sjtu species species 1 Bacillus methanolicus 1471 281 0 504 0 species Bacillus endophyticus 1 135735 1 Bacillus flexus species 86664 355 0 0 2772 653685 9 species group 192 0 Bacillus sonorensis 1 species 119858 1080 0 1 Bacillus subtilis species 1423 26 0 species 1 Bacillus vallismortis 72361 species 1 Bacillus paralicheniformis 1648923 164 0 0 256 1452 species 1 Bacillus atrophaeus 0 838 1938374 species subgroup 3 species 1 Bacillus velezensis 492670 399 0 species Bacillus siamensis 1 659243 52 0 1390 species Bacillus amyloliquefaciens 1 0 387 216 0 Bacillus licheniformis 1 species 1402 213 0 species 1 Bacillus glycinifermentans 1664069 1 Bacillus gibsonii species 79881 76 0 genus 1 182709 702 0 0 702 182710 1 Oceanobacillus iheyensis species 150247 genus Anoxybacillus 6 0 17 1 1443 Anoxybacillus gonensis 1 species 198467 255 0 33934 species Anoxybacillus flavithermus 1 0 427 species 1 Anoxybacillus amylolyticus 294699 242 0 2639704 no rank 2 0 502 1490057 species 1 Anoxybacillus sp. B7M1 0 239 263 0 1 Anoxybacillus sp. B2M1 species 1490052 0 427 45667 genus 2 238 0 species Halobacillus mangrovi 1 402384 0 189 1570 species Halobacillus halophilus 1 129337 genus 15 Geobacillus 0 62 1 1820 0 182 33940 species Geobacillus thermodenitrificans 1 0 73 1921421 species Geobacillus genomosp. 3 1 129338 species Geobacillus subterraneus 1 0 75 0 151 1422 species Geobacillus stearothermophilus 1 564 0 4 species group 1505648 1 Geobacillus thermoleovorans species 33941 282 0 33938 species 1 Geobacillus thermocatenulatus 0 126 82 0 1 Geobacillus kaustophilus species 1462 169283 species 1 Geobacillus lituanicus 0 74 6 no rank 2642459 713 0 0 49 544556 1 Geobacillus sp. Y412MC61 species 0 198 581103 Geobacillus sp. Y4.1MC1 1 species 0 42 550542 species 1 Geobacillus sp. Y412MC52 0 218 471223 1 Geobacillus sp. WCH70 species species Geobacillus sp. C56-T3 1 691437 147 0 59 0 species Geobacillus sp. GHH01 1 1233873 84406 genus Virgibacillus 7 14 0 1 2061 663 0 2 no rank 2620237 0 365 1911587 species 1 Virgibacillus sp. 6R Virgibacillus sp. SK37 1 species 403957 298 0 1 Virgibacillus phasianinus species 2017483 318 0 species Virgibacillus necropolis 1 163877 360 0 1482 1 Virgibacillus halodenitrificans species 0 315 Virgibacillus pantothenticus 1 species 1473 391 0 784 0 no rank 9 539002 0 241 539738 no rank 2 241 0 1 7 2 Gemella genus 1378 234 0 1 no rank 2624949 species 1 Gemella sp. oral taxon 928 1785995 234 0 7 no rank 539742 543 0 543 0 14 1 genus 7 Exiguobacterium 33986 332410 1 Exiguobacterium sibiricum species 0 88 2644629 no rank 4 0 331 0 76 1399115 species 1 Exiguobacterium sp. MH3 0 64 360911 Exiguobacterium sp. AT1b 1 species 95 0 Exiguobacterium sp. U13-1 1 species 1849031 1224749 species Exiguobacterium sp. ZWU0009 1 0 96 132920 species Exiguobacterium antarcticum 1 0 110 0 79 186824 2 family 0 75 1677050 1 genus 75 0 Novibacillus thermophilus 1 species 1471761 4 0 genus Laceyella 1 292635 133 0 1 family 186821 0 133 663587 no rank 1 0 133 85683 species 1 [Bacillus] selenitireducens 13402 0 32 1 Staphylococcaceae 40 family 90964 0 242 2005363 genus 1 0 242 1849491 1 Auricoccus indicus species 0 92 45669 1 genus 0 92 407035 species 1 Salinicoccus halodurans 0 1 6 731 69965 genus Macrococcus 4 0 182 69966 1 Macrococcus caseolyticus species 0 342 2619255 no rank 1 1898474 species 1 Macrococcus sp. IME1552 0 342 201 0 species Macrococcus canis 1 1855823 genus Staphylococcus 33 1279 12305 0 106 1 Staphylococcus agnetis 1 species 985762 221 0 0 605 1288 species 1 Staphylococcus xylosus species Staphylococcus hyicus 1 1284 220 0 0 374 29388 Staphylococcus capitis 1 species 246432 1 Staphylococcus equorum species 0 495 0 316 1281 species Staphylococcus carnosus 1 1290 1 Staphylococcus hominis species 0 379 0 351 1292 species 1 Staphylococcus warneri 214473 species Staphylococcus nepalensis 1 0 311 0 294 28035 species Staphylococcus lugdunensis 1 0 144 170573 species Staphylococcus pettenkoferi 1 1283 species 1 Staphylococcus haemolyticus 0 456 0 1319 1280 1 Staphylococcus aureus species Staphylococcus simiae 1 species 308354 403 0 206 0 species Staphylococcus piscifermentans 1 70258 332 0 1 Staphylococcus kloosii species 29384 1286 species Staphylococcus simulans 1 0 243 0 357 985002 species 1 Staphylococcus argenteus 91994 no rank 1 0 349 0 349 1715860 Staphylococcus sp. AntiMn-1 1 species 222 0 1 Staphylococcus lutrae species 155085 0 245 283734 species Staphylococcus pseudintermedius 1 342 0 species 1 Staphylococcus cohnii 29382 1 Staphylococcus pasteuri species 45972 833 0 311 0 Staphylococcus succinus 1 species 61015 0 274 1295 1 Staphylococcus schleiferi species 0 460 1296 species Staphylococcus sciuri 1 388 0 species 1 Staphylococcus stepanovicii 643214 species Staphylococcus felis 1 46127 243 0 325 0 1 Staphylococcus saprophyticus species 29385 species 1 Staphylococcus epidermidis 1282 733 0 70255 1 Staphylococcus condimenti species 0 295 153 0 species Staphylococcus muscae 1 1294 family Paenibacillaceae 46 186822 9914 1 0 22 0 320 85151 3 no rank 0 1 1 320 55079 Aneurinibacillus 3 genus 137 0 no rank 1 2642329 1450761 1 Aneurinibacillus sp. XH2 species 0 137 0 182 1500254 Aneurinibacillus soli 1 species 0 1 69 8395 44249 genus Paenibacillus 36 1 Paenibacillus peoriae species 59893 269 0 189426 species Paenibacillus odorifer 1 0 213 1870820 species 1 Paenibacillus ihbetae 0 133 1464 1 Paenibacillus larvae species 0 295 0 123 1462996 Paenibacillus yonginensis 1 species 0 230 1763538 species 1 Paenibacillus crassostreae 0 177 1178515 species 1 Paenibacillus swuensis 169760 species 1 Paenibacillus stellifer 0 74 0 181 160799 Paenibacillus borealis 1 species 476 0 species Paenibacillus donghaensis 1 414771 species Paenibacillus durus 1 44251 395 0 1616788 species 1 Paenibacillus bovis 0 190 189425 species Paenibacillus graminis 1 0 256 Paenibacillus naphthalenovorans 1 species 162209 122 0 Paenibacillus sabinae 1 species 365617 114 0 159 0 species Paenibacillus beijingensis 1 1126833 142 0 Paenibacillus kribbensis 1 species 172713 0 164 159743 species 1 Paenibacillus terrae 1406 species 1 Paenibacillus polymyxa 0 1241 174 0 species 1 Paenibacillus xylanexedens 528191 13 no rank 185978 2681 0 280 0 1 Paenibacillus sp. FSL R5-0345 species 1536770 Paenibacillus sp. BIHB4019 1 species 1870819 215 0 0 200 1536775 Paenibacillus sp. FSL H7-0737 1 species 1 Paenibacillus sp. Y412MC10 species 481743 138 0 273 0 species 1 Paenibacillus sp. FSL P4-0081 1536769 1536774 species Paenibacillus sp. FSL H7-0357 1 0 169 141 0 1 Paenibacillus sp. JDR-2 species 324057 1536772 Paenibacillus sp. FSL R7-0273 1 species 0 188 147 0 Paenibacillus sp. FSL R5-0912 1 species 1536771 162 0 species 1 Paenibacillus sp. lzh-N1 2069255 0 150 1695218 Paenibacillus sp. 32O-W 1 species Paenibacillus sp. FSL R7-0331 1 species 1536773 199 0 0 419 1566358 species 1 Paenibacillus sp. IHBB 10380 0 176 2044880 species group 1 species Paenibacillus riograndensis 1 483937 176 0 341 0 1 Paenibacillus mucilaginosus species 61624 145 1 0 1 2 Thermobacillus genus 76632 377615 Thermobacillus composti 1 species 0 144 1032 1 0 8 4 Brevibacillus genus 55080 1 Brevibacillus formosus species 54913 214 0 0 310 1393 species 1 Brevibacillus brevis Brevibacillus laterosporus 1 species 1465 500 0 8 0 1 5060 186818 family 25 Planococcaceae 685 0 1 3 genus Solibacillus 3 648800 333 0 no rank 1 2637870 333 0 1 Solibacillus sp. R5-41 species 2048654 0 349 76853 Solibacillus silvestris 1 species 1569 Sporosarcina 5 genus 1 0 6 1228 Sporosarcina ureae 1 species 1571 574 0 species Sporosarcina psychrophila 1 1476 336 0 2647733 2 no rank 0 312 152 0 1 Sporosarcina sp. P33 species 1930764 160 0 1 Sporosarcina sp. P37 species 1930546 245 0 1 genus 648802 0 245 241244 1 Rummeliibacillus stabekisii species 157226 genus 1 0 248 1 Jeotgalibacillus malaysiensis species 1508404 248 0 genus Kurthia 2 1649 299 0 1 2 297 0 1 no rank 2644826 297 0 Kurthia sp. 11kri321 1 species 1750719 genus Planococcus 12 1372 2347 0 1 19 0 223 1374 species 1 Planococcus kocurii 0 100 1038856 species 1 Planococcus plakortidis 0 322 1302659 species Planococcus sp. L10.15 1 0 378 2662419 2 no rank 2058136 species Planococcus sp. MB-3u-03 1 0 137 species 1 Planococcus sp. PAMC 21323 1526927 241 0 Planococcus maritimus 1 species 192421 197 0 1598147 Planococcus faecalis 1 species 0 260 0 180 161360 Planococcus antarcticus 1 species 0 258 414778 1 Planococcus donghaensis species 1215089 species Planococcus halocryophilus 1 0 300 200991 1 Planococcus rifietoensis species 0 110 family 9 Listeriaceae 186820 2312 0 5 1 2755 genus 2 Brochothrix 0 2 1 284 0 282 2756 Brochothrix thermosphacta 1 species 2023 0 1 17 Listeria 6 genus 1637 0 225 1640 species 1 Listeria seeligeri species Listeria monocytogenes 1 1639 750 0 319 0 species 1 Listeria innocua 1642 1643 Listeria welshimeri 1 species 0 282 430 0 1 Listeria ivanovii species 1638 186826 order Lactobacillales 160 0 88 1 31208 11339 1 0 22 family 58 Lactobacillaceae 33958 Pediococcus 6 genus 1253 1048 0 1 12 114090 1 Pediococcus inopinatus species 0 178 1670797 1 species group 0 115 115 0 species Pediococcus acidilactici 1 1254 1 Pediococcus pentosaceus species 1255 325 0 51663 1 Pediococcus damnosus species 0 155 263 0 species Pediococcus claussenii 1 187452 339 0 genus 3 2767893 106 0 Lactobacillus parabuchneri 1 species 152331 0 111 1581 species 1 Lactobacillus buchneri 1138822 1 Lactobacillus curieae species 0 122 103 0 1 3616 1578 genus Lactobacillus 16 species Lactobacillus helveticus 1 1587 375 0 144 0 species Lactobacillus amylolyticus 1 83683 165 0 Lactobacillus acetotolerans 1 species 1600 1604 Lactobacillus amylovorus 1 species 0 227 1579 species 1 Lactobacillus acidophilus 0 210 0 292 1584 species Lactobacillus delbrueckii 1 0 484 1596 Lactobacillus gasseri 1 species 181 0 species 1 Lactobacillus kefiranofaciens 267818 2620435 no rank 4 0 543 0 79 2108362 Lactobacillus sp. D1501 1 species 243 0 species 1 Lactobacillus sp. wkB8 1545702 species Lactobacillus sp. CBA3606 1 2099789 96 0 125 0 species Lactobacillus sp. CBA3605 1 2099788 1 Lactobacillus jensenii species 109790 220 0 0 169 52242 1 Lactobacillus gallinarum species Lactobacillus johnsonii 1 species 33959 503 0 80 0 genus 1 2767876 1603 species Lactobacillus amylophilus 1 0 80 0 374 2767885 genus 2 129 0 species 1 Lactobacillus curvatus 28038 245 0 species Lactobacillus sakei 1 1599 2742598 3 genus 0 663 1 Lactobacillus mucosae species 97478 99 0 452 0 Lactobacillus reuteri 1 species 1598 112 0 species 1 Lactobacillus fermentum 1613 0 166 2767890 1 genus 0 166 1193095 species 1 Lactobacillus hokkaidonensis 1 genus 2767877 146 0 146 0 species 1 Lactobacillus kunkeei 148814 0 1048 2767887 4 genus 0 693 1624 species Lactobacillus salivarius 1 1601 Lactobacillus agilis 1 species 0 93 88 0 1 Lactobacillus ruminis species 1623 0 174 89059 1 Lactobacillus acidipiscis species genus 3 2759736 648 0 1597 species 1 Lactobacillus paracasei 0 209 241 0 1 Lactobacillus casei species 1582 198 0 Lactobacillus rhamnosus 1 species 47715 2767842 3 genus 0 729 1589 species Lactobacillus pentosus 1 0 110 1 Lactobacillus plantarum species 1590 516 0 species Lactobacillus paraplantarum 1 60520 103 0 141 0 1 genus 2767892 0 141 240427 species Lactobacillus paracollinoides 1 0 288 2767886 genus 3 72 0 Lactobacillus koreensis 1 species 637971 267363 species Lactobacillus zymae 1 0 56 0 160 1580 Lactobacillus brevis 1 species 358 0 genus 2 2767889 375175 species 1 Lactobacillus backii 0 208 Lactobacillus coryniformis 1 species 1610 150 0 1229 0 genus 6 2767879 219 0 Lactobacillus alimentarius 1 species 1602 species 1 Lactobacillus allii 1847728 254 0 0 178 1612 species Lactobacillus farciminis 1 0 200 1007676 species 1 Lactobacillus ginsenosidimutans 203 0 species 1 Lactobacillus crustorum 392416 0 175 1074467 Lactobacillus heilongjiangensis 1 species genus 2 2767881 444 0 species Lactobacillus lindneri 1 53444 262 0 1625 1 Lactobacillus sanfranciscensis species 0 182 263855 1 no rank 0 261 261 0 species 1 Lactobacillales bacterium 1993866 2447 0 3 1 17 Leuconostocaceae family 81850 169 0 genus 1 46254 0 169 1247 Oenococcus oeni 1 species 762 0 1 3 genus 6 Weissella 46255 species 1 Weissella koreensis 165096 195 0 163 0 species Weissella ceti 1 759620 1631871 1 Weissella jogaejeotgali species 0 133 137591 1 Weissella cibaria species 0 106 0 162 1249 1 Weissella paramesenteroides species 1243 genus Leuconostoc 9 0 11 1 1513 1 no rank 2685106 174 0 979982 species 1 Leuconostoc sp. C2 0 174 species Leuconostoc citreum 1 33964 122 0 0 358 1245 species 1 Leuconostoc mesenteroides Leuconostoc carnosum 1 species 1252 213 0 Leuconostoc lactis 1 species 1246 76 0 136609 species Leuconostoc kimchii 1 0 182 1244 Leuconostoc gelidum 1 species 0 288 1 Leuconostoc garlicum species 255248 89 0 family Carnobacteriaceae 9 186828 2173 7 0 1 1357 0 6 1 genus Carnobacterium 5 2747 539 0 2 no rank 257487 0 316 208596 species Carnobacterium sp. 17-4 1 0 223 1564681 species Carnobacterium sp. CP1 1 Carnobacterium inhibens 1 species 147709 254 0 1 Carnobacterium maltaromaticum species 2751 558 0 0 391 191769 1 genus 2632303 1 no rank 0 391 0 391 1911586 species 1 Marinilactibacillus sp. 15R 2 genus 1470540 418 0 234 0 no rank 1 2621505 234 0 species Jeotgalibaca sp. PTS2502 1 1903686 184 0 species 1 Jeotgalibaca dankookensis 708126 1 0 18 9796 1300 49 Streptococcaceae family 1301 43 Streptococcus genus 0 1 100 7947 400065 species Streptococcus merionis 1 0 110 0 196 1348 species 1 Streptococcus parauberis 0 148 150055 Streptococcus lutetiensis 1 species 89 0 1 Streptococcus cristatus species 45634 1307 1 Streptococcus suis species 0 458 1304 1 Streptococcus salivarius species 0 348 3 species group 671232 694 0 1328 species Streptococcus anginosus 1 0 312 0 262 1338 species 1 Streptococcus intermedius species Streptococcus constellatus 1 76860 120 0 690 0 no rank 7 2608887 0 222 1319 1 Streptococcus sp. 'group B' species 0 53 1156431 1 Streptococcus sp. I-G2 species 1902136 species 1 Streptococcus sp. NPS 308 0 93 1156433 species Streptococcus sp. I-P16 1 0 67 species Streptococcus sp. A12 1 1759399 74 0 0 88 712633 Streptococcus sp. oral taxon 431 1 species species Streptococcus sp. FDAARGOS_192 1 1839799 93 0 1888195 species 1 Streptococcus himalayensis 0 92 160 0 1 Streptococcus pasteurianus species 197614 species Streptococcus mitis 1 28037 239 0 1349 species Streptococcus uberis 1 0 199 1 Streptococcus thermophilus species 1308 283 0 species Streptococcus pyogenes 1 1314 366 0 1309 species 1 Streptococcus mutans 0 259 82348 1 Streptococcus pluranimalium species 0 101 1318 species Streptococcus parasanguinis 1 0 146 0 99 1825069 species Streptococcus marmotae 1 404 0 species Streptococcus agalactiae 1 1311 1305 species Streptococcus sanguinis 1 0 87 0 136 59310 species Streptococcus macedonicus 1 1811193 Streptococcus pantholopis 1 species 0 95 91 0 species 1 Streptococcus pseudopneumoniae 257758 173 0 species 1 Streptococcus iniae 1346 1 Streptococcus oralis species 1303 297 0 species Streptococcus pneumoniae 1 1313 290 0 411 0 species group 2 119603 species Streptococcus dysgalactiae 1 1334 154 0 1336 Streptococcus equi 1 species 0 257 1 Streptococcus gallolyticus species 315405 310 0 0 106 1326 Streptococcus acidominimus 1 species 89 0 Streptococcus halotolerans 1 species 1814128 0 110 1335 Streptococcus equinus 1 species 270 0 species 1 Streptococcus infantarius 102684 1302 Streptococcus gordonii 1 species 0 301 1831 0 1 3 Lactococcus 5 genus 1357 0 279 1363 Lactococcus garvieae 1 species 1358 Lactococcus lactis 1 species 0 1190 250 0 species 1 Lactococcus piscium 1364 0 109 1366 species 1 Lactococcus raffinolactis 884 0 7 family 186827 884 0 1 6 Aerococcus 7 genus 1375 1 Aerococcus viridans species 1377 165 0 0 124 87541 Aerococcus christensenii 1 species 215 0 Aerococcus urinaeequi 1 species 51665 90 0 species Aerococcus sanguinicola 1 119206 0 92 128944 species 1 Aerococcus urinaehominis 192 0 Aerococcus urinae 1 species 1376 Enterococcaceae 18 family 81852 4220 0 7 1 0 1 26 2861 1350 12 Enterococcus genus 53346 1 Enterococcus mundtii species 0 276 2005703 1 Enterococcus wangshanyuanii species 0 274 1352 species 1 Enterococcus faecium 0 461 219 0 Enterococcus durans 1 species 53345 37734 species Enterococcus casseliflavus 1 0 147 2608891 no rank 3 0 429 2060306 species 1 Enterococcus sp. FDAARGOS_163 0 136 0 149 2060307 species Enterococcus sp. FDAARGOS_375 1 0 144 2057791 species Enterococcus sp. CR-Ec1 1 0 440 1351 species 1 Enterococcus faecalis 0 294 417368 species 1 Enterococcus thailandicus species Enterococcus hirae 1 1354 295 0 0 1 4 569 2737 Vagococcus 3 genus 278 0 species Vagococcus penaei 1 633807 519472 species Vagococcus teuberi 1 0 287 0 360 51668 genus 1 Tetragenococcus halophilus 1 species 51669 360 0 33969 1 genus 0 423 0 423 33970 species Melissococcus plutonius 1 0 3 1 21403 544448 Tenericutes 102 phylum 0 773 713063 2 no rank 1 Tenericutes bacterium MO-XQ species 1911684 403 0 0 370 1911683 species 1 Tenericutes bacterium MZ-XQ 0 40 1 20278 31969 Mollicutes 97 class 36 0 1 9257 2085 Mycoplasmatales 44 order 0 34 1 9221 2092 Mycoplasmataceae 43 family 6123 78 0 1 genus 27 Mycoplasma 2093 1 Mycoplasma crocodyli species 50052 213 0 190 0 1 Mycoplasma gallisepticum species 2096 57372 species 1 Mycoplasma suis 0 123 Mycoplasma flocculare 1 species 2128 150 0 0 139 984991 1 Mycoplasma parvum species 2099 Mycoplasma hyopneumoniae 1 species 0 284 258 0 1 Mycoplasma putrefaciens species 2123 2683645 no rank 1 0 195 species Mycoplasma sp. (ex Biomphalaria glabrata) 1 1749074 195 0 130 0 species Mycoplasma arthritidis 1 2111 243 0 1 Mycoplasma hyorhinis species 2100 species Mycoplasma genitalium 1 2097 136 0 0 314 28227 species 1 Mycoplasma penetrans species 1 Mycoplasma bovoculi 45362 206 0 66 0 1 Mycoplasma wenyonii species 65123 0 389 2098 Mycoplasma hominis 1 species species Mycoplasma mobile 1 2118 283 0 244 0 species 1 Mycoplasma canadense 29554 317 0 1 Mycoplasma haemofelis species 29501 342 0 species Mycoplasma yeatsii 1 51365 0 71 171632 species Mycoplasma ovis 1 40 0 1 Mycoplasma pneumoniae species 2104 130 0 1 Mycoplasma haemocanis species 136241 1433 0 3 species group 656088 0 317 2105 species Mycoplasma leachii 1 0 418 2095 Mycoplasma capricolum 1 species species Mycoplasma mycoides 1 2102 698 0 86660 species 1 Mycoplasma dispar 0 149 415 0 3 1 genus Ureaplasma 3 2129 0 192 2130 species 1 Ureaplasma urealyticum 134821 species 1 Ureaplasma parvum 0 220 2767358 genus 12 0 2649 0 242 2107 species Mycoplasma pulmonis 1 0 261 2110 Mycoplasma agalactiae 1 species 0 148 2109 Mycoplasma synoviae 1 species 111 0 species 1 Mycoplasma californicum 2113 Mycoplasma bovigenitalium 1 species 2112 170 0 species 1 Mycoplasma bovis 28903 479 0 1 Mycoplasma arginini species 2094 183 0 0 240 171284 species Mycoplasma cynos 1 Mycoplasma fermentans 1 species 2115 232 0 species Mycoplasma canis 1 29555 244 0 29553 Mycoplasma bovirhinis 1 species 0 169 48003 species Mycoplasma pullorum 1 0 170 0 1 20 8978 186328 order Entomoplasmatales 39 24 Spiroplasmataceae family 2131 6274 0 1 27 2132 23 Spiroplasma genus 0 1 98 6247 Spiroplasma atrichopogonis 1 species 1114980 187 0 0 418 216946 species Spiroplasma turonicum 1 0 185 2144 species Spiroplasma mirum 1 202 0 1 Spiroplasma chrysopicola species 216933 216937 species 1 Spiroplasma floricola 0 388 0 228 315358 1 Spiroplasma eriocheiris species species 1 Spiroplasma clarkii 2139 290 0 0 250 2136 species 1 Spiroplasma monobiae no rank 2 2637901 448 0 0 224 1898044 species 1 Spiroplasma sp. TU-14 1914410 species 1 Spiroplasma sp. NBRC 100390 0 224 0 347 2145 species 1 Spiroplasma taiwanense 165 0 species Spiroplasma syrphidicola 1 216945 species Spiroplasma helicoides 1 216938 285 0 361 0 species Spiroplasma culicicola 1 216935 357 0 species Spiroplasma diminutum 1 216936 47834 Spiroplasma kunkelii 1 species 0 259 226 0 species 1 Spiroplasma apis 2137 422 0 Spiroplasma litorale 1 species 216942 199 0 species 1 Spiroplasma sabaudiense 216944 244 0 1 Spiroplasma citri species 2133 387 0 species Spiroplasma cantharicola 1 362837 301 0 species Spiroplasma corruscae 1 216934 12 0 1 2684 33925 family Entomoplasmataceae 14 Mesoplasma 8 genus 46239 1895 0 40 1 0 503 2151 species 1 Mesoplasma florum 1 Mesoplasma syrphidae species 225999 187 0 0 168 138853 1 Mesoplasma lactucae species 0 236 219745 1 Mesoplasma tabanidae species 282 0 1 Mesoplasma coleopterae species 324078 243 0 1 Mesoplasma entomophilum species 2149 1 Mesoplasma chauliocola species 216427 236 0 genus 5 Entomoplasma 46238 777 13 0 1 1 Entomoplasma somnilux species 215578 253 0 266 0 species 1 Entomoplasma melaleucae 81459 0 171 214888 Entomoplasma luminosum 1 species 74 0 species 1 Entomoplasma freundtii 74700 2003 0 6 1 Acholeplasmatales 13 order 186329 0 7 1 1997 2146 12 Acholeplasmataceae family 2147 5 Acholeplasma genus 0 1 17 1107 257 0 species 1 Acholeplasma laidlawii 2148 Acholeplasma palmae 1 species 38986 352 0 61635 species Acholeplasma brassicae 1 0 203 35623 1 Acholeplasma oculi species 0 278 33926 6 Candidatus Phytoplasma genus 7 0 1 883 species group 1 85632 164 0 164 0 Candidatus Phytoplasma australiense 1 species 59748 0 189 85630 species group 1 species Candidatus Phytoplasma mali 1 37692 189 0 0 523 85620 species group 3 0 172 229545 species Aster yellows witches'-broom phytoplasma 1 159 0 Maize bushy stunt phytoplasma 1 species 202462 192 0 1 Onion yellows phytoplasma species 100379 0 349 2799557 no rank 2 0 2 1 349 1912503 genus 2 Candidatus Izimaplasma 0 347 2624196 1 no rank 347 0 species 1 Candidatus Izimaplasma sp. HR1 1541959 0 3473678 1798711 151 clade phylum Cyanobacteria 151 1117 3473678 0 1 9 597 0 1 1 order 4 Chroococcidiopsidales 1890505 596 0 7 1 family 3 Chroococcidiopsidaceae 1890528 Chroococcidiopsis 2 genus 54298 589 0 2 1 0 587 54299 1 Chroococcidiopsis thermalis species order 54 Synechococcales 1890424 3426754 105 0 1 1890429 family Acaryochloridaceae 2 2 0 1 498 496 0 genus 1 155977 1 Acaryochloris marina species 155978 496 0 1890438 family Leptolyngbyaceae 6 0 10 1 1156 1146 0 1 20 genus Leptolyngbya 5 47251 3 no rank 2650499 854 0 111781 species 1 Leptolyngbya sp. PCC 7376 0 418 0 252 1080068 species Leptolyngbya sp. O-77 1 0 184 1752064 Leptolyngbya sp. NIES-3755 1 species species 1 Leptolyngbya boryana 1184 272 0 family 4 1890428 784 0 1142 4 Synechocystis genus 21 0 1 784 0 763 2640012 no rank 3 0 234 2116702 1 Synechocystis sp. IPPAS B-1465 species 0 295 1147 Synechocystis sp. PCC 6714 1 species species 1 Synechocystis sp. PCC 6803 1148 234 0 331 0 2 family 2303730 0 5 1 331 170610 2 Halomicronema genus 326 0 species Halomicronema hongdechloris 1 1209493 1213 5 Prochloraceae family 0 1 14 3248586 genus Prochlorococcus 4 1218 3248572 0 1 132 1219 species Prochlorococcus marinus 1 0 2468918 2627481 2 no rank 0 779522 1501269 species Prochlorococcus sp. MIT 0801 1 0 5094 1501268 Prochlorococcus sp. MIT 0604 1 species 0 774428 family 32 Synechococcaceae 1890426 174835 0 29 1 167375 3 Cyanobium genus 48 0 1 3695 1802 0 no rank 1 2627006 species 1 Cyanobium sp. NIES-981 1851505 1802 0 1845 0 species 1 Cyanobium gracile 59930 170575 0 1 809 Synechococcus 26 genus 1129 125 0 Synechococcus lividus 1 species 33070 0 169382 2626047 23 no rank 0 120 195498 species 1 Synechococcus sp. PCC 7117 29410 Synechococcus sp. WH 8103 1 species 0 15446 species Synechococcus sp. WH 7803 1 32051 2329 0 6799 0 species Synechococcus sp. RCC307 1 316278 195253 species Synechococcus sp. PCC 6312 1 0 190 species 1 Synechococcus sp. PCC 7003 374981 184 0 species 1 Synechococcus sp. SynAce01 1916956 1167 0 species 1 Synechococcus sp. PCC 8807 195248 135 0 1280380 species Synechococcus sp. KORDI-100 1 0 7103 166314 Synechococcus sp. WH 8109 1 species 0 44223 46980 0 Synechococcus sp. CC9605 1 species 110662 141 0 species Synechococcus sp. PCC 73109 1 374982 184 0 species 1 Synechococcus sp. JA-2-3B'a(2-13) 321332 585425 Synechococcus sp. KORDI-52 1 species 0 15924 84588 species Synechococcus sp. WH 8102 1 0 15665 0 148 321327 species 1 Synechococcus sp. JA-3-3Ab 1350461 species Synechococcus sp. UTEX 2973 1 0 281 1827144 1 Synechococcus sp. NIES-970 species 0 192 1175 0 Synechococcus sp. CC9902 1 species 316279 32049 species Synechococcus sp. PCC 7002 1 0 145 0 9645 585423 species Synechococcus sp. KORDI-49 1 0 445 1173263 species Synechococcus sp. PCC 7502 1 761 0 1 Synechococcus sp. CC9311 species 64471 32046 species Synechococcus elongatus 1 0 259 1 genus 13034 397 0 292566 Dactylococcopsis salina 1 species 0 397 139 0 genus 1 146785 0 139 146786 1 Thermosynechococcus elongatus species 1890436 family Pseudanabaenaceae 2 2 0 1 459 1152 genus 1 0 457 457 0 1 no rank 2593292 0 457 82654 1 Pseudanabaena sp. PCC 7367 species 396 0 1 no rank 1983111 396 0 cyanobacterium endosymbiont of Epithemia turgida 1 species 718217 subclass 46 1301283 27764 0 18220 0 1 62 Oscillatoriales 20 order 1150 0 541 1892255 2 family 2 Crinalium genus 241421 541 0 1 1 540 0 species 1 Crinalium epipsammum 241425 251 15 0 1 family 3 Cyanothecaceae 1892249 0 21 1 236 43988 Cyanothece 2 genus 1 no rank 2649277 215 0 Cyanothece sp. PCC 7425 1 species 395961 215 0 1892252 family Microcoleaceae 5 11 0 1 14529 327 0 5 1 Microcoleus 2 genus 44471 322 0 no rank 1 2642155 1173027 Microcoleus sp. PCC 7113 1 species 0 322 14191 1 0 1 genus Trichodesmium 2 1205 0 14190 1206 species 1 Trichodesmium erythraeum 1892251 Coleofasciculaceae 3 family 1 0 13 248 235 4 0 1 Geitlerinema 2 genus 63132 0 231 2648775 no rank 1 1173025 1 Geitlerinema sp. PCC 7407 species 0 231 family 6 Oscillatoriaceae 1892254 2589 0 1 25 0 1 7 1322 1155738 genus 2 Moorea 1 Moorea producens species 1155739 1315 0 0 2 1 1242 1158 genus 3 Oscillatoria 0 484 482564 species 1 Oscillatoria nigro-viridis 118323 species 1 Oscillatoria acuminata 0 756 31 0 1 9544 1118 Chroococcales 26 order 875 0 5 1 family 3 Cyanobacteriaceae 1890452 0 1 1 870 102234 genus 2 Cyanobacterium 1 Cyanobacterium aponinum species 379064 869 0 1890464 Chroococcaceae 8 family 43 0 1 3643 2 Chondrocystis genus 268175 1290 0 6 1 1284 0 no rank 1 2648896 2005460 species Chondrocystis sp. NIES-4102 1 0 1284 genus Geminocystis 3 669357 1781 1 0 11 0 1770 2625037 2 no rank 0 931 1615909 species 1 Geminocystis sp. NIES-3708 0 839 1617448 species Geminocystis sp. NIES-3709 1 102231 Gloeocapsa 2 genus 0 1 1 529 no rank 1 2623012 528 0 1173026 1 Gloeocapsa sp. PCC 7428 species 0 528 1890449 4 Microcystaceae family 0 10 1 1657 genus 3 Microcystis 1125 1647 0 8 1 0 460 2643300 no rank 1 0 460 1967666 Microcystis sp. MC19 1 species 1126 species Microcystis aeruginosa 1 0 1179 3338 0 12 1 family Aphanothecaceae 10 1890450 28070 genus 2 0 1095 0 515 2546356 1 species 515 0 strain 1 Cyanothece sp. PCC 7424 65393 0 580 2546359 species 1 Cyanothece sp. PCC 7822 1 strain 497965 580 0 92682 2 no rank 0 342 0 1 1 342 76023 genus 2 Halothece 341 0 no rank 1 2632878 341 0 Halothece sp. PCC 7418 1 species 65093 2546365 2 genus 0 694 species 2 2546366 694 0 351 0 strain 1 Cyanothece sp. PCC 8802 395962 41431 Cyanothece sp. PCC 8801 1 strain 0 343 genus 1 263510 543 0 0 543 2546360 1 species 543 0 strain Cyanothece sp. ATCC 51142 1 43989 1453359 2 Candidatus Atelocyanobacterium genus 0 6 1 652 0 646 713887 1 Candidatus Atelocyanobacterium thalassa species 2378 0 1 1 order Pleurocapsales 7 52604 1981 0 10 1 family 4 Dermocarpellaceae 1890498 1971 0 12 1 Stanieria 3 genus 102115 species Stanieria cyanosphaera 1 102116 903 0 2642663 no rank 1 0 1056 0 1056 1807358 1 Stanieria sp. NIES-3757 species 396 0 1 23 2 Hyellaceae family 1890500 0 373 44474 genus 1 54308 species Pleurocapsa minor 1 0 373 15353 0 1 49 order Nostocales 32 1161 2661849 8 family 0 4450 4450 0 59 1 Calothrix 8 genus 1186 0 554 32054 species 1 Calothrix parietina 3837 0 no rank 6 2619626 445 0 species Calothrix sp. NIES-3974 1 2005462 0 988 2005469 species 1 Calothrix sp. NIES-4071 575 0 species Calothrix sp. 336/3 1 1337936 1954171 species 1 Calothrix sp. NIES-2098 0 619 species 1 Calothrix sp. PCC 7507 99598 504 0 0 706 2005461 1 Calothrix sp. NIES-4101 species 1219117 no rank 1 0 510 species Nostocales cyanobacterium HT-58-2 1 1940762 510 0 0 1 35 8470 1162 Nostocaceae 18 family 5280 1 0 75 Nostoc 10 genus 1177 272131 species 1 Nostoc punctiforme 0 520 4126 0 7 no rank 2593658 1 Nostoc sp. PCC 7524 species 28072 683 0 1 Nostoc sp. NIES-3756 species 1751286 747 0 species Nostoc sp. PCC 7107 1 317936 635 0 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 1261031 542 0 0 444 103690 species 1 Nostoc sp. PCC 7120 0 557 1869241 species Nostoc sp. CENA543 1 0 518 1618022 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 559 1306274 species Nostoc flagelliforme 1 3 Trichormus genus 264688 1078 0 4 1 535 0 1 Trichormus variabilis species 264691 539 0 species 1 Trichormus azollae 1164 1163 Anabaena 4 genus 1 0 32 2077 2 no rank 2619674 1287 0 595 0 species Anabaena sp. 90 1 46234 0 692 1647413 1 Anabaena sp. WA102 species 1165 Anabaena cylindrica 1 species 0 758 1892263 family 2 0 736 Fischerella 2 genus 1190 736 0 5 1 494603 1 no rank 0 731 species 1 Fischerella sp. NIES-3754 1752063 731 0 2 Rivulariaceae family 1185 1138 0 9 1 genus 1 373984 1129 0 1129 0 no rank 1 2676603 373994 1 Rivularia sp. PCC 7116 species 0 1129 307596 class 6 Gloeobacteria 0 3 1 427 307595 Gloeobacterales 5 order 2 0 1 424 422 5 0 1 family Gloeobacteraceae 4 1890422 genus 3 Gloeobacter 33071 417 0 1 1 1416614 species 1 Gloeobacter kilaueensis 0 207 33072 species 1 Gloeobacter violaceus 0 209 37 Chloroflexi phylum 200795 2521 6 0 1 301297 class 6 0 473 1202465 3 order 0 284 1202464 family 3 0 284 Dehalococcoides 3 genus 61434 284 0 1 2 61435 1 Dehalococcoides mccartyi species 0 226 56 0 1 no rank 237581 species Dehalococcoides sp. UCH007 1 1522671 56 0 189 0 8 1 3 Dehalogenimonas genus 670486 93 0 species 1 Dehalogenimonas lykanthroporepellens 552810 1839801 1 Dehalogenimonas formicexedens species 0 88 332 0 2 1 class Thermomicrobia 6 189775 189776 order Thermomicrobiales 2 0 2 1 94 189777 1 family 0 92 499 genus 1 0 92 species 1 Thermomicrobium roseum 500 92 0 85000 3 subclass 0 236 Sphaerobacterales 3 order 85001 236 0 1 2 255728 2 suborder 0 234 85002 2 Sphaerobacteraceae family 0 1 1 234 genus 1 2056 233 0 2057 1 Sphaerobacter thermophilus species 0 233 32061 10 Chloroflexia class 0 1 1 838 0 5 1 837 32064 9 Chloroflexales order suborder 4 1508594 472 0 family 4 1106 472 0 4 Chloroflexus genus 1107 472 0 11 1 152260 1 Chloroflexus aggregans species 0 187 1108 Chloroflexus aurantiacus 2 species 137 0 1 274 0 137 480224 1 Chloroflexus sp. Y-400-fl strain 360 0 suborder 4 1508595 0 1 2 360 1508635 Roseiflexaceae 4 family 120961 3 Roseiflexus genus 0 9 1 358 Roseiflexus castenholzii 1 species 120962 180 0 2609473 no rank 1 0 169 0 169 357808 species Roseiflexus sp. RS-1 1 475962 2 class 0 227 2 order 475963 227 0 0 227 475964 2 family 227 0 6 1 genus Caldilinea 2 233191 species 1 Caldilinea aerophila 133453 221 0 292625 class Anaerolineae 7 0 7 1 319 292629 Anaerolineales 6 order 2 0 1 312 310 0 1 1 family Anaerolineaceae 5 292628 no rank 1 1324991 92 0 92 0 species 1 Anaerolineaceae bacterium oral taxon 439 1889813 113 0 1 genus 2019482 1986204 1 Brevefilum fermentans species 0 113 104 0 1 1 genus 2 Anaerolinea 233189 167964 Anaerolinea thermophila 1 species 0 103 class Ardenticatenia 5 1382928 326 0 1 1 order 4 Ardenticatenales 1382929 325 0 1 5 1382930 family Ardenticatenaceae 3 1 0 3 320 4 0 1 317 1988031 genus Candidatus Promineofilum 2 0 313 1806508 1 Candidatus Promineofilum breve species phylum Actinobacteria 621 201174 127648 1 0 12 0 439 1 122272 1760 class 573 Actinobacteria 28181 1 0 131 Corynebacteriales 159 order 85007 316606 2 family 0 123 genus 2 Segniliparus 286801 123 0 5 1 286802 species Segniliparus rotundus 1 0 118 85028 Tsukamurellaceae 4 family 1 0 1 563 1 0 6 562 2060 genus Tsukamurella 3 350 0 Tsukamurella tyrosinosolvens 1 species 57704 species 1 Tsukamurella paurometabola 2061 206 0 0 40 1 7783 85025 31 Nocardiaceae family genus 23 Rhodococcus 1827 5320 0 1 135 0 159 334542 1 Rhodococcus qingshengii species 192944 12 no rank 0 2158 1805827 1 Rhodococcus sp. MTM3W5.2 species 0 274 141 0 species Rhodococcus sp. H-CA8f 1 1727214 348 0 species 1 Rhodococcus sp. WB1 1033922 1 Rhodococcus sp. BH4 species 1807790 122 0 Rhodococcus sp. PBTS 2 1 species 1653479 118 0 0 163 1564114 Rhodococcus sp. B7740 1 species 1 Rhodococcus sp. 008 species 1723645 136 0 679318 species 1 Rhodococcus sp. WMMA185 0 113 0 220 1653478 species 1 Rhodococcus sp. PBTS 1 0 171 1570939 species 1 Rhodococcus sp. 2G 0 210 935199 1 Rhodococcus sp. p52 species 142 0 1 Rhodococcus sp. YL-1 species 1045808 146 0 species 1 Rhodococcus fascians 1828 0 298 103816 species 1 Rhodococcus pyridinivorans 273 0 Rhodococcus erythropolis 1 species 1833 0 747 37919 species 1 Rhodococcus opacus 0 256 43767 Rhodococcus hoagii 1 species 0 219 1829 1 Rhodococcus rhodochrous species 291 0 species 1 Rhodococcus jostii 132919 1 Rhodococcus ruber species 1830 324 0 0 314 191292 species Rhodococcus aetherivorans 1 2423 20 0 1 genus Nocardia 7 1817 37330 Nocardia nova 1 species 0 312 0 490 135487 Nocardia cyriacigeorgica 1 species 0 273 37332 1 Nocardia seriolae species 349 0 species Nocardia farcinica 1 37329 37326 species Nocardia brasiliensis 1 0 661 Nocardia terpenica 1 species 455432 318 0 1653 family 52 Corynebacteriaceae 0 10 1 5877 genus 51 Corynebacterium 1716 5867 0 87 1 43771 species 1 Corynebacterium urealyticum 0 90 0 140 1404244 species 1 Corynebacterium glyciniphilum 110 0 species 1 Corynebacterium ureicelerivorans 401472 191493 Corynebacterium sphenisci 1 species 0 158 248 0 1 Corynebacterium glutamicum species 1718 61 0 species Corynebacterium casei 1 160386 1 Corynebacterium callunae species 1721 58 0 136857 1 Corynebacterium testudinoris species 0 118 0 145 575200 species 1 Corynebacterium maris 0 107 35757 species Corynebacterium cystitidis 1 87 0 1 Corynebacterium efficiens species 152794 1 Corynebacterium lactis species 1231000 63 0 144 0 2 no rank 2624378 species Corynebacterium sp. NML98-0116 1 702967 82 0 62 0 species 1 Corynebacterium sp. ATCC 6931 1487956 1697 1 Corynebacterium ammoniagenes species 0 68 73 0 species Corynebacterium camporealensis 1 161896 43770 species Corynebacterium striatum 1 0 140 89154 1 Corynebacterium terpenotabidum species 0 108 1230998 species 1 Corynebacterium frankenforstense 0 179 species 1 Corynebacterium aurimucosum 169292 86 0 92706 [Brevibacterium] flavum 1 species 0 98 90 0 1 Corynebacterium flavescens species 28028 1727 1 Corynebacterium variabile species 0 170 156978 species 1 Corynebacterium imitans 0 111 536 0 species 1 Corynebacterium uterequi 1072256 74 0 species 1 Corynebacterium ulcerans 65058 Corynebacterium humireducens 1 species 1223514 222 0 203263 1 Corynebacterium aquilae species 0 117 1 Corynebacterium marinum species 349751 169 0 146827 1 Corynebacterium simulans species 0 90 species Corynebacterium falsenii 1 108486 112 0 120 0 species 1 Corynebacterium crudilactis 1652495 132 0 1 Corynebacterium jeikeium species 38289 104 0 Corynebacterium doosanense 1 species 1121358 0 92 1719 Corynebacterium pseudotuberculosis 1 species 42817 1 Corynebacterium argentoratense species 0 84 93 0 Corynebacterium kutscheri 1 species 35755 0 78 571915 species 1 Corynebacterium mustelae Corynebacterium resistens 1 species 258224 59 0 1 Corynebacterium stationis species 1705 88 0 191610 species Corynebacterium atypicum 1 0 87 1 Corynebacterium singulare species 161899 95 0 61 0 Corynebacterium phocae 1 species 161895 1408191 1 Corynebacterium deserti species 0 71 137 0 species Corynebacterium diphtheriae 1 1717 species Corynebacterium vitaeruminis 1 38305 160 0 Corynebacterium epidermidicanis 1 species 1050174 73 0 Corynebacterium glaucum 1 species 187491 112 0 0 113 225326 1 Corynebacterium halotolerans species 0 49 161879 Corynebacterium kroppenstedtii 1 species 11739 0 1 22 Mycobacteriaceae 56 family 1762 0 372 1 6418 1763 Mycobacterium 34 genus 8 species group 120793 1351 0 0 64 1138383 1 Mycobacterium paraintracellulare species 417 0 104 1 species Mycobacterium intracellulare 4 1767 subspecies Mycobacterium chimaera 1 222805 159 0 subspecies Mycobacterium indicus pranii 1 35617 63 0 91 0 subspecies Mycobacterium yongonense 1 1203599 339268 species 1 Mycobacterium colombiense 0 229 701042 species Mycobacterium marseillense 1 0 135 1 Mycobacterium avium species 1764 506 0 0 245 1768 1 Mycobacterium kansasii species 213 0 1 Mycobacterium ulcerans species 1809 77643 4 species group 0 563 0 125 78331 species 1 Mycobacterium canettii 1773 species 3 Mycobacterium tuberculosis 0 162 1 438 0 136 33894 Mycobacterium africanum 1 biotype biotype 1 Mycobacterium bovis 1765 140 0 482462 Mycobacterium dioxanotrophicus 1 species 0 222 species 1 Mycobacterium haemophilum 29311 114 0 2631 0 no rank 13 2642494 0 224 1682113 species 1 Mycobacterium sp. YC-RL4 1273687 Mycobacterium sp. VKM Ac-1817D 1 species 0 195 0 248 212767 1 Mycobacterium sp. JS623 species 0 228 164757 Mycobacterium sp. JLS 1 species Mycobacterium sp. KMS 1 species 189918 247 0 2051552 Mycobacterium sp. PYR15 1 species 0 199 1879023 1 Mycobacterium sp. djl-10 species 0 265 0 191 1570328 species Mycobacterium sp. NRRL B-3805 1 215 0 1 Mycobacterium sp. WY10 species 1920667 species Mycobacterium sp. QIA-37 1 1561223 114 0 0 201 1545728 species Mycobacterium sp. EPa45 1 species 1 Mycobacterium sp. MOTT36Y 1168287 69 0 0 235 164756 species Mycobacterium sp. MCS 1 species 1 Mycobacterium leprae 1769 59 0 0 296 1781 species 1 Mycobacterium marinum species group 1 2249310 190 0 0 190 722731 species 1 Mycobacterium shigaense 0 162 261524 species Mycobacterium liflandii 1 112 0 genus 1 697025 639313 Hoyosella subflava 1 species 0 112 0 350 1073531 genus 2 0 178 1788 species 1 Mycobacterium terrae 875328 Mycobacterium sinense 1 species 0 172 genus 5 670516 1587 0 0 141 1520670 species 1 Mycobacterium stephanolepidis 1578165 species Mycobacterium saopaulense 1 0 160 0 152 83262 species Mycobacterium immunogenum 1 Mycobacterium abscessus 1 species 36809 984 0 species 1 Mycobacterium chelonae 1774 150 0 0 3250 1866885 13 genus 0 217 36814 species 1 Mycobacterium rhodesiae 0 256 1800 species Mycobacterium chubuense 1 1 Mycobacterium phlei species 1771 289 0 1804 Mycobacterium gilvum 1 species 0 328 240 0 1 Mycobacterium smegmatis species 1772 0 265 1791 species 1 Mycobacterium aurum 0 221 110539 Mycobacterium vanbaalenii 1 species 0 191 1795 Mycobacterium neoaurum 1 species 0 293 134601 Mycobacterium goodii 1 species 1810 Mycobacterium vaccae 1 species 0 268 758802 1 Mycobacterium litorale species 0 250 210 0 Mycobacterium fortuitum 1 species 1766 222 0 species 1 Mycobacterium thermoresistibile 1797 1484 0 1 2 family 9 Gordoniaceae 85026 2053 8 Gordonia genus 17 0 1 1482 species Gordonia bronchialis 1 2054 236 0 84595 species 1 Gordonia polyisoprenivorans 0 226 0 213 1004901 species 1 Gordonia iterans 207 0 Gordonia phthalatica 1 species 1136941 0 367 2657482 2 no rank species 1 Gordonia sp. KTR9 337191 208 0 2059875 Gordonia sp. YC-JH1 1 species 0 159 species 1 Gordonia terrae 2055 216 0 family 3 85029 402 0 0 3 1 402 37914 genus Dietzia 3 136 0 species Dietzia timorensis 1 499555 0 263 2617939 no rank 1 712270 Dietzia sp. oral taxon 368 1 species 0 263 no rank 1 697024 79 0 1847725 1 genus 0 79 0 79 1528099 species Lawsonella clevelandensis 1 52018 1 no rank 0 262 1650658 Actinobacteria bacterium IMCC26256 1 species 0 262 85011 order 82 Streptomycetales 0 65 1 39102 2062 family Streptomycetaceae 81 1 0 139 39037 2063 genus 5 Kitasatospora 0 1 8 2569 Kitasatospora albolonga 1 species 68173 1053 0 species 1 Kitasatospora aureofaciens 1894 403 0 species Kitasatospora setae 1 2066 623 0 482 0 1 no rank 2633591 2018025 1 Kitasatospora sp. MMS16-BH015 species 0 482 36329 0 677 1 75 Streptomyces genus 1883 species 1 Streptomyces lydicus 47763 1026 0 species Streptomyces parvulus 1 146923 297 0 75293 species Streptomyces autolyticus 1 0 1476 970 0 species Streptomyces albus 1 1888 33903 Streptomyces avermitilis 1 species 0 450 species 1 Streptomyces noursei 1971 430 0 379067 1 Streptomyces bingchenggensis species 0 630 0 323 1901 Streptomyces clavuligerus 1 species 0 370 2049881 1 Streptomyces sp. XZHG99 species 68202 1 Streptomyces fulvissimus species 0 354 343 0 species 1 Streptomyces xinghaiensis 1038928 0 313 68192 1 Streptomyces cyaneogriseus species 0 409 193462 species 1 Streptomyces niveus 0 469 1642299 species 1 Streptomyces alfalfae 858 0 species Streptomyces pactum 1 68249 species Streptomyces griseochromogenes 1 68214 396 0 68570 species 1 Streptomyces albulus 0 1470 species Streptomyces pratensis 1 1169025 295 0 Streptomyces pristinaespiralis 1 species 38300 347 0 0 407 1907 1 Streptomyces glaucescens species 0 524 1915 species 1 Streptomyces lincolnensis 1 Streptomyces pluripotens species 1355015 300 0 0 991 1912 1 Streptomyces hygroscopicus species 360 0 species 1 Streptomyces albireticuli 1940 439 0 Streptomyces violaceusniger 1 species 68280 Streptomyces rubrolavendulae 1 species 285473 383 0 340 0 1 Streptomyces cattleya species 29303 271 0 Streptomyces peucetius 1 species 1950 553510 species Streptomyces gilvosporeus 1 0 488 Streptomyces lividans 1 species 1916 393 0 0 388 1926 1 Streptomyces reticuli species 305 0 species 1 Streptomyces chartreusis 1969 Streptomyces collinus 1 species 42684 341 0 species Streptomyces scabiei 1 1930 565 0 0 10044 2593676 24 no rank 518 0 Streptomyces sp. CdTB01 1 species 1725411 0 294 1265601 species 1 Streptomyces sp. PAMC 26508 0 473 206662 species Streptomyces sp. FR-008 1 0 294 1649184 Streptomyces sp. CFMR 7 1 species species Streptomyces sp. CMB-StM0423 1 2059884 466 0 Streptomyces sp. Sge12 1 species 1972846 470 0 449 0 Streptomyces sp. RTd22 1 species 1841249 species 1 Streptomyces sp. Mg1 465541 478 0 1262452 species Streptomyces sp. 769 1 0 502 1495638 Streptomyces sp. M56 1 species 0 606 species 1 Streptomyces sp. 4F 1751294 311 0 0 372 444103 species 1 Streptomyces sp. CNQ-509 0 272 862751 species 1 Streptomyces sp. SirexAA-E 556 0 1 Streptomyces sp. 3211 species 1964449 0 348 1961713 species Streptomyces sp. MOE7 1 species Streptomyces sp. Tue 6075 1 1661694 346 0 0 355 1984801 species Streptomyces sp. CLI2509 1 0 509 1849967 species 1 Streptomyces sp. SAT1 391 0 species Streptomyces sp. TN58 1 234612 562 0 species 1 Streptomyces sp. P3 2135430 303 0 species 1 Streptomyces sp. S8 1837283 429 0 Streptomyces sp. fd1-xmd 1 species 1812480 371 0 species 1 Streptomyces sp. CCM_MD2014 1561022 2094021 1 Streptomyces sp. WAC00288 species 0 369 0 498 1914 species 1 Streptomyces lavendulae 325 0 species Streptomyces sp. S10(2016) 1 1783515 261 0 species 1 Streptomyces xiamenensis 408015 Streptomyces formicae 1 species 1616117 557 0 519 0 1 Streptomyces malaysiensis species 92644 1 Streptomyces vietnamensis species 362257 457 0 450 0 1 Streptomyces ambofaciens species 1889 54571 species Streptomyces venezuelae 1 0 953 342 0 species 1 Streptomyces leeuwenhoekii 1437453 297 0 species Streptomyces violaceoruber 1 1935 629295 species group 2 0 714 384 0 species subgroup 1 1482558 species 1 Streptomyces globisporus 1908 384 0 0 330 1482596 1 species subgroup 330 0 Streptomyces griseus 1 species 1911 0 498 67267 1 Streptomyces alboflavus species species group 2 1477431 1671 0 42239 1 Streptomyces sampsonii species 0 353 1902 Streptomyces coelicolor 1 species 0 1318 0 345 164348 species Streptomyces puniciscabiei 1 0 124 1 19455 85006 order Micrococcales 135 113 0 2 family 85018 0 1 3 113 1862 Dermatophilus 2 genus 110 0 Dermatophilus congolensis 1 species 1863 0 15 1 1612 85017 family 9 Promicromonosporaceae 638 6 0 1 3 Cellulosimicrobium genus 157920 293 0 no rank 1 2624466 0 293 1980001 Cellulosimicrobium sp. TH-20 1 species 0 339 1710 1 Cellulosimicrobium cellulans species genus Xylanimonas 2 186188 354 0 1 3 351 0 species Xylanimonas cellulosilytica 1 186189 605 1 0 6 genus Isoptericola 3 254250 307 0 species 1 Isoptericola dokdonensis 372663 292 0 species 1 Isoptericola variabilis 139208 7383 0 1 63 46 Microbacteriaceae family 85023 33886 genus 2 0 326 161 0 species Rathayibacter toxicus 1 145458 0 165 33888 Rathayibacter tritici 1 species 110932 Leifsonia 2 genus 0 2 1 404 Leifsonia xyli 1 species 1575 402 0 33877 genus Agromyces 2 1 0 1 280 0 279 453304 species Agromyces aureus 1 25 0 1 1063 1573 genus Clavibacter 6 1038 0 179 1 species 5 Clavibacter michiganensis 28447 209 0 1 Clavibacter insidiosus subspecies 33014 201 0 1 Clavibacter nebraskensis subspecies 31963 207 0 subspecies Clavibacter capsici 1 1874630 242 0 1 Clavibacter sepedonicus subspecies 31964 518733 1 genus 0 189 412690 Microterricola viridarii 1 species 0 189 0 1 2 608 447237 genus 2 Frondihabitans 0 606 2626248 no rank 1 606 0 1 Frondihabitans sp. PAMC 28766 species 1795630 genus 1 1759331 204 0 species Cnuibacter physcomitrellae 1 1619308 204 0 genus 2 Pontimonas 1434032 109 0 1 1 0 108 1159327 species Pontimonas salivibrio 1 0 217 1655488 3 no rank 1655489 clade 3 0 217 529883 genus Rhodoluna 3 1 0 8 217 106 0 Candidatus Rhodoluna planktonica 1 species 535712 529884 1 Rhodoluna lacicola species 0 103 Curtobacterium 4 genus 2034 664 0 1 10 257496 2 no rank 0 442 225 0 species 1 Curtobacterium sp. MR_MD2014 1561023 217 0 species 1 Curtobacterium sp. BH-2-1-1 1905847 212 0 1 Curtobacterium pusillum species 69373 69578 genus Cryobacterium 3 0 1 6 345 180 0 1 no rank 2649013 0 180 1978566 Cryobacterium sp. LW097 1 species species 1 Cryobacterium arcticum 670052 159 0 0 1 41 2710 33882 genus 14 Microbacterium 0 1640 2609290 no rank 8 1714373 Microbacterium sp. No. 7 1 species 0 341 0 196 2103230 1 Microbacterium sp. str. 'China' species 175 0 species Microbacterium sp. 1.5R 1 1916917 species 1 Microbacterium sp. BH-3-3-3 1906742 243 0 173 0 species Microbacterium sp. TPU 3598 1 1938334 1 Microbacterium sp. XT11 species 367477 167 0 0 159 1696072 Microbacterium sp. CGR1 1 species 1 Microbacterium sp. PAMC 28756 species 1795053 186 0 0 225 162426 1 Microbacterium hominis species species Microbacterium testaceum 1 2033 214 0 300019 species Microbacterium paludicola 1 0 254 0 145 84292 1 Microbacterium chocolatum species 0 191 36805 Microbacterium aurum 1 species genus 2 Microcella 337004 138 0 1 2 species Microcella alkaliphila 1 279828 136 0 0 63 1705353 1 genus 0 63 708131 Aurantimicrobium minutum 1 species 1268 family Micrococcaceae 36 0 31 1 4691 63 1 0 1 2 Renibacterium genus 1645 62 0 Renibacterium salmoninarum 1 species 1646 genus 1 1269 159 0 1270 1 Micrococcus luteus species 0 159 89 0 1 genus 2078575 species Arthrobacter sp. IHBB 11108 1 1618207 89 0 2471 60 0 1 15 Arthrobacter genus 1663 0 1977 235627 no rank 12 1771959 species 1 Arthrobacter sp. ATCC 21022 0 138 111 0 1 Arthrobacter sp. FB24 species 290399 species 1 Arthrobacter sp. YC-RL1 1652545 148 0 species 1 Arthrobacter sp. PAMC 25486 1494608 143 0 Arthrobacter sp. ERGS1:01 1 species 1704044 235 0 0 136 1806905 species 1 Arthrobacter sp. ZXY-2 Arthrobacter sp. PGP41 1 species 2079227 353 0 0 141 1690248 Arthrobacter sp. LS16 1 species Arthrobacter sp. QXT-31 1 species 1357915 167 0 2020486 species Arthrobacter sp. YN 1 0 131 species 1 Arthrobacter sp. U41 1849032 168 0 106 0 species 1 Arthrobacter sp. Rue61a 1118963 165 0 Arthrobacter crystallopoietes 1 species 37928 656366 1 Arthrobacter alpinus species 0 269 275 2 0 1 Sinomonas 2 genus 596707 species 1 Sinomonas atrocyanea 37927 273 0 510 0 5 1 genus Pseudarthrobacter 4 1742993 361575 Pseudarthrobacter phenanthrenivorans 1 species 0 176 0 146 121292 1 Pseudarthrobacter sulfonivorans species 0 183 85085 species Pseudarthrobacter chlorophenolicus 1 168 1 0 6 Glutamicibacter 2 genus 1742989 256701 species 1 Glutamicibacter arilaitensis 0 162 1742992 genus 1 0 140 43663 species 1 Paenarthrobacter aurescens 0 140 Kocuria 4 genus 57493 515 0 12 1 72000 1 Kocuria rhizophila species 0 106 species 1 Kocuria flava 446860 249 0 species 1 Kocuria palustris 71999 148 0 0 100 1868332 1 genus species 1 Neomicrococcus aestuarii 556325 100 0 genus 2 32207 170 0 43675 1 Rothia mucilaginosa species 0 96 2047 Rothia dentocariosa 1 species 0 74 no rank 1 577468 69 0 genus 1 2038 69 0 2039 1 Tropheryma whipplei species 0 69 1 0 2 282 85019 family Brevibacteriaceae 3 0 3 1 280 1696 genus Brevibacterium 2 277 0 species 1 Brevibacterium linens 1703 Dermabacteraceae 11 family 85020 1780 0 8 1 43668 genus 6 Brachybacterium 26 0 1 1552 247 0 no rank 1 2623841 species 1 Brachybacterium sp. P6-10-X1 1903186 247 0 species 1 Brachybacterium sp. VR2415 2017485 213 0 species 1 Brachybacterium faecium 43669 221 0 1 Brachybacterium ginsengisoli species 1331682 230 0 2017484 1 Brachybacterium sp. VM2412 species 0 615 genus Devriesea 2 472568 133 0 1 10 472569 Devriesea agamarum 1 species 0 123 36739 Dermabacter 2 genus 2 0 1 87 1630135 Dermabacter vaginalis 1 species 0 85 1082 1 0 4 6 Cellulomonadaceae family 85016 1707 genus 5 Cellulomonas 0 18 1 1078 315 0 species Cellulomonas fimi 1 1708 11 Cellulomonas gilvus 1 species 0 209 0 250 2620175 1 no rank 0 250 2003551 species Cellulomonas sp. PSBB021 1 0 286 1711 Cellulomonas flavigena 1 species 145357 6 Dermacoccaceae family 0 3 1 648 0 143 57499 genus 1 Kytococcus sedentarius 1 species 1276 143 0 745364 2 Luteipulveratus genus 0 1 1 264 571913 Luteipulveratus mongoliensis 1 species 0 263 genus 2 Dermacoccus 57495 238 1 0 2 species 1 Dermacoccus nishinomiyaensis 1274 236 0 family 2 125316 331 0 Beutenbergia 2 genus 84756 331 1 0 5 Beutenbergia cavernae 1 species 84757 326 0 2 family 145360 266 0 266 0 1 1 2 Sanguibacter genus 60919 265 0 species 1 Sanguibacter keddieii 60920 85021 family 8 Intrasporangiaceae 0 1 3 1021 2 Serinicoccus genus 265976 252 0 2 1 1758689 Serinicoccus sp. JLT9 1 species 0 250 1 genus 267408 263 0 0 263 2663846 no rank 1 species Arsenicicoccus sp. oral taxon 190 1 1658671 263 0 0 1 9 266 53457 genus Janibacter 2 species 1 Janibacter indicus 857417 257 0 genus 2 Intrasporangium 53357 237 0 1 1 53358 species Intrasporangium calvum 1 0 236 0 53 85022 2 family 43673 2 Jonesia genus 0 1 1 53 0 52 43674 species 1 Jonesia denitrificans 0 3 1 347 622452 4 Kineosporiales order Kineosporiaceae 3 family 83778 344 3 0 1 33981 Kineococcus 2 genus 1 0 7 341 0 334 131568 species 1 Kineococcus radiotolerans 85014 order 3 0 346 85034 family 3 Glycomycetaceae 1 0 13 346 genus 2 Stackebrandtia 283810 333 5 0 1 0 328 283811 species 1 Stackebrandtia nassauensis 85008 order Micromonosporales 20 0 1 2 4948 19 Micromonosporaceae family 28056 4946 0 1 78 0 22 1 1240 673534 genus Plantactinospora 4 0 1218 2631981 no rank 3 0 454 2071627 Plantactinospora sp. BB1 1 species Plantactinospora sp. KBS50 1 species 2024580 362 0 402 0 species Plantactinospora sp. BC1 1 2108470 2154 1 0 23 genus 6 Actinoplanes 1865 1866 species 1 Actinoplanes missouriensis 0 397 1297 0 no rank 3 2626549 species Actinoplanes sp. SE50 1 2033844 442 0 134676 1 Actinoplanes sp. SE50/110 species 0 442 649831 Actinoplanes sp. N902-109 1 species 0 413 196914 species Actinoplanes friuliensis 1 0 437 1 0 13 1047 1873 4 Micromonospora genus 0 356 2617518 no rank 1 356 0 species Micromonospora sp. L5 1 648999 0 291 1003110 1 Verrucosispora maris species Micromonospora aurantiaca 1 species 47850 387 0 genus Verrucosispora 1 84593 1 0 genus 3 Salinispora 168694 426 0 1 8 215 0 species Salinispora tropica 1 168695 0 203 168697 species Salinispora arenicola 1 2 order 622450 192 0 0 1 1 192 622451 2 Actinopolysporaceae family 1849 1 genus 0 191 414996 1 Actinopolyspora erythraea species 0 191 2 no rank 1643818 222 0 1 0 9 222 147067 2 Thermobispora genus 213 0 Thermobispora bispora 1 species 2006 1608 0 16 order 2037 2049 Actinomycetaceae 16 family 0 23 1 1608 0 85 2529408 genus 1 52773 1 Actinomyces meyeri species 0 85 1139 0 33 1 genus 9 Actinomyces 1654 0 72 1852377 Actinomyces pacaensis 1 species 112 0 species 1 Actinomyces oris 544580 1960083 Actinomyces gaoshouyii 1 species 0 114 1912795 species 1 Actinomyces sp. VUL4_3 0 57 2609248 3 no rank 0 528 1 Actinomyces sp. oral taxon 414 species 712122 199 0 154 0 species Actinomyces sp. oral taxon 897 1 2081702 0 175 1851395 1 Actinomyces sp. Chiba101 species 111015 species Actinomyces radicidentis 1 0 223 1653174 1 genus 0 74 0 74 59505 species Actinotignum schaalii 1 28263 1 genus 0 64 64 0 1 Arcanobacterium haemolyticum species 28264 1 0 1 126 1069494 genus Trueperella 2 1661 species Trueperella pyogenes 1 0 125 0 97 2050 genus 1 0 97 2051 1 Mobiluncus curtisii species 0 261 1643684 order 3 4 0 1 261 85031 family Nakamurellaceae 3 53460 Nakamurella 2 genus 0 7 1 257 250 0 species Nakamurella multipartita 1 53461 0 980 1643682 6 order 6 Geodermatophilaceae family 85030 980 0 1 37 0 2 1 310 1860 genus 2 Geodermatophilus 1861 Geodermatophilus obscurus 1 species 0 308 genus 1 88138 340 0 0 340 477641 species Modestobacter marinus 1 293 0 5 1 2 Blastococcus genus 38501 138336 1 Blastococcus saxobsidens species 0 288 2154 0 5 1 12 Candidatus Nanopelagicales order 2039638 2162846 family 11 0 2149 1163 0 10 1 7 Candidatus Planktophila genus 622681 193 0 1 Candidatus Planktophila vernalis species 1884907 1884914 species 1 Candidatus Planktophila dulcis 0 223 0 233 573600 species 1 Candidatus Planktophila limnetica 0 118 1884904 species 1 Candidatus Planktophila sulfonica 198 0 species Candidatus Planktophila lacus 1 1884913 0 188 1884905 1 Candidatus Planktophila versatilis species 986 0 1 8 4 Candidatus Nanopelagicus genus 2039639 Candidatus Nanopelagicus hibericus 1 species 1884915 268 0 305 0 species Candidatus Nanopelagicus limnes 1 1884634 405 0 species 1 Candidatus Nanopelagicus abundans 1884916 85010 order 41 Pseudonocardiales 0 13 1 10727 2070 family 40 Pseudonocardiaceae 0 87 1 10714 0 1 1 268 142577 genus Prauserella 2 530584 species Prauserella marina 1 0 267 2029 genus Kibdelosporangium 2 0 1 1 404 403 0 species Kibdelosporangium phytohabitans 1 860235 165301 2 Lentzea genus 0 6 1 475 1586287 species 1 Lentzea guizhouensis 0 469 1851 1 genus 0 170 170 0 species 1 Saccharomonospora viridis 1852 2 Alloactinosynnema genus 674734 339 0 7 1 no rank 1 2636053 332 0 332 0 species 1 Alloactinosynnema sp. L-07 1653480 genus 2 Saccharothrix 2071 466 0 1 13 453 0 Saccharothrix espanaensis 1 species 103731 2747 0 20 1 8 Pseudonocardia genus 1847 6 no rank 2619320 2270 0 0 352 445576 1 Pseudonocardia sp. AL041005-10 species 1641402 Pseudonocardia sp. HH130629-09 1 species 0 359 1688404 species 1 Pseudonocardia sp. EC080610-09 0 415 1690815 species Pseudonocardia sp. HH130630-07 1 0 403 346 0 Pseudonocardia sp. EC080625-04 1 species 1096868 species 1 Pseudonocardia sp. EC080619-01 1096856 395 0 457 0 species 1 Pseudonocardia dioxanivorans 240495 40566 genus Actinosynnema 3 6 0 1 859 0 437 40567 1 Actinosynnema mirum species species 1 Actinosynnema pretiosum 42197 416 0 65496 6 Actinoalloteichus genus 1 0 26 1533 0 325 1470176 species 1 Actinoalloteichus hoggarensis 585 0 2 no rank 2644606 0 296 2072503 species Actinoalloteichus sp. AHMU CJ021 1 289 0 1 Actinoalloteichus sp. GBA129-24 species 1612551 0 415 1612552 1 Actinoalloteichus sp. ADI127-7 species 0 182 340345 species 1 Actinoalloteichus hymeniacidonis 2 Saccharopolyspora genus 1835 331 1 0 1 0 330 1836 species Saccharopolyspora erythraea 1 2674 0 21 1 genus Amycolatopsis 7 1813 2618356 no rank 2 0 747 364 0 Amycolatopsis sp. AA4 1 species 1896961 383 0 1 Amycolatopsis sp. BJA-103 species 1911175 0 677 31958 Amycolatopsis orientalis 1 species 0 392 208439 Amycolatopsis japonica 1 species 1814 species Amycolatopsis methanolica 1 0 346 1 Amycolatopsis mediterranei species 33910 491 0 0 1 3 361 43356 genus Kutzneria 2 358 0 species 1 Kutzneria albida 43357 2247 19 0 1 order 7 Frankiales 85013 74712 Frankiaceae 6 family 0 17 1 2228 16 0 1 2211 1854 Frankia 5 genus species 1 Frankia inefficax 298654 494 0 0 373 106370 species 1 Frankia casuarinae 489 0 no rank 1 2632575 489 0 1 Frankia sp. EAN1pec species 298653 839 0 Frankia alni 1 species 1859 0 5 1 1384 414714 order 4 Catenulisporales 414877 family Catenulisporaceae 3 1 0 13 1379 1366 0 5 1 genus Catenulispora 2 414878 1 Catenulispora acidiphila species 304895 1361 0 order 2 1643683 159 0 family 2 85032 159 0 159 0 5 1 genus 2 Acidothermus 28048 28049 1 Acidothermus cellulolyticus species 0 154 85009 Propionibacteriales 32 order 0 1 25 4211 31957 family Propionibacteriaceae 18 0 30 1 1934 1743 2 genus 0 274 59 0 no rank 1 2608905 671223 species 1 Propionibacterium sp. oral taxon 193 0 59 1744 species Propionibacterium freudenreichii 1 0 215 0 1 14 745 72763 genus 5 Tessaracoccus 1332264 species 1 Tessaracoccus aquimaris 0 219 0 200 2635419 1 no rank Tessaracoccus sp. T2.5-30 1 species 1909732 200 0 0 168 399497 Tessaracoccus flavescens 1 species 1610493 1 Tessaracoccus flavus species 0 144 Cutibacterium 4 genus 1912216 301 1 0 5 0 122 33010 species Cutibacterium avidum 1 0 103 1747 1 Cutibacterium acnes species 33011 1 Cutibacterium granulosum species 0 71 95 0 genus 1 2801844 95 0 Pseudopropionibacterium propionicum 1 species 1750 67 0 4 1 Propionimicrobium 2 genus 203133 2633994 1 no rank 0 63 0 63 1871034 1 Propionimicrobium sp. Marseille-P3275 species 0 2 1 229 1912215 2 Acidipropionibacterium genus 1748 species 1 Acidipropionibacterium acidipropionici 0 227 genus 1 29404 193 0 Microlunatus phosphovorus 1 species 29405 193 0 85015 family Nocardioidaceae 13 0 32 1 2252 Pimelobacter 2 genus 2044 468 0 5 1 463 0 1 Pimelobacter simplex species 2045 1839 4 Nocardioides genus 0 11 1 869 Nocardioides sp. 78 1 species 2045452 218 0 350 0 1 Nocardioides dokdonensis species 450734 0 290 2615069 no rank 1 0 290 196162 1 Nocardioides sp. JS614 species 2040 genus 2 Aeromicrobium 0 1 1 295 294 0 species 1 Aeromicrobium erythreum 2041 365 0 1 14 genus 2 Kribbella 182639 351 0 Kribbella flavida 1 species 182640 genus 2 Micropruina 116071 223 0 3 1 1 Micropruina glycogenica species 75385 220 0 0 20 1 2857 85012 16 Streptosporangiales order family 3 Thermomonosporaceae 2012 301 0 1 1 genus Thermomonospora 2 2019 300 0 1 4 2020 1 Thermomonospora curvata species 0 296 17 0 1 1357 2004 family 5 Streptosporangiaceae 0 5 1 589 2000 Streptosporangium 2 genus 2001 species 1 Streptosporangium roseum 0 584 83681 2 Nonomuraea genus 0 4 1 751 2593643 no rank 1 0 747 0 747 1909395 species Nonomuraea sp. ATCC 55076 1 8 0 1 1179 83676 family 7 Nocardiopsaceae 4 Nocardiopsis genus 2013 1013 1 0 15 53437 1 Nocardiopsis alba species 0 268 0 343 280236 Nocardiopsis gilva 1 species 2014 species Nocardiopsis dassonvillei 1 0 387 83677 Thermobifida 2 genus 1 0 2 158 156 0 1 Thermobifida fusca species 2021 2190 1 0 9 Bifidobacteriales 25 order 85004 31953 family Bifidobacteriaceae 24 0 1 21 2181 58 0 genus 1 196081 0 58 78259 Scardovia inopinata 1 species 1759 0 1 22 19 Bifidobacterium genus 1678 239 0 Bifidobacterium longum 1 species 216816 62 0 species Bifidobacterium coryneforme 1 1687 28025 species Bifidobacterium animalis 1 0 96 157 0 1 Bifidobacterium choerinum species 35760 56 0 species Bifidobacterium indicum 1 1691 57 0 1 Bifidobacterium thermophilum species 33905 species Bifidobacterium pseudolongum 1 1694 153 0 0 90 638619 1 Bifidobacterium actinocoloniiforme species species 1 Bifidobacterium breve 1685 161 0 68 0 Bifidobacterium angulatum 1 species 1683 2 Bifidobacterium catenulatum species 1686 116 1 0 40 0 76 630129 Bifidobacterium kashiwanohense 1 subspecies 0 59 1684 Bifidobacterium asteroides 1 species species Bifidobacterium scardovii 1 158787 115 0 species Bifidobacterium pseudocatenulatum 1 28026 54 0 Bifidobacterium bifidum 1 species 1681 124 0 0 62 1680 1 Bifidobacterium adolescentis species species 1 Bifidobacterium dentium 1689 68 0 282 0 1 3 genus 2 Gardnerella 2701 2702 species 1 Gardnerella vaginalis 0 279 196082 genus 1 0 61 78258 1 Parascardovia denticolens species 0 61 0 609 1752188 4 no rank 0 108 1848255 species 1 Actinobacteria bacterium IMCC25003 168 0 1 Actinobacteria bacterium IMCC26103 species 1848756 0 122 1848755 Actinobacteria bacterium IMCC26077 1 species 1848754 species 1 Actinobacteria bacterium IMCC19121 0 211 0 350 84995 class 5 84996 order 5 Rubrobacterales 1 0 7 350 84997 Rubrobacteraceae 4 family 0 1 8 343 42255 genus 3 Rubrobacter 0 1 4 335 49319 Rubrobacter xylanophilus 1 species 0 185 42256 species 1 Rubrobacter radiotolerans 0 146 84998 class Coriobacteriia 27 0 1 4 2074 84999 order Coriobacteriales 13 0 9 1 786 6 Atopobiaceae family 1643824 530 0 5 1 Olsenella 4 genus 133925 406 0 1 6 0 167 1805478 1 Olsenella sp. Marseille-P2300 species 0 129 2638792 1 no rank 129 0 species 1 Olsenella sp. oral taxon 807 712411 133926 Olsenella uli 1 species 0 104 2767353 genus 1 0 119 1382 1 Atopobium parvulum species 0 119 84107 family Coriobacteriaceae 6 0 1 2 247 genus Collinsella 2 102106 73 0 1 1 74426 species Collinsella aerofaciens 1 0 72 97 0 1 no rank 84113 species Coriobacteriaceae bacterium 68-1-3 1 1531429 97 0 0 3 1 75 33870 Coriobacterium 2 genus Coriobacterium glomerans 1 species 33871 72 0 1643822 order 13 Eggerthellales 0 10 1 1284 0 30 1 1274 1643826 family Eggerthellaceae 12 genus 3 Gordonibacter 644652 393 0 8 1 species 1 Gordonibacter urolithinfaciens 1335613 201 0 1841863 species 1 Gordonibacter massiliensis 0 184 genus 1 1981050 156 0 0 156 1944646 1 Phoenicibacter massiliensis species 317 0 6 1 genus 3 Eggerthella 84111 102 0 no rank 1 2648737 502558 Eggerthella sp. YY7918 1 species 0 102 0 209 84112 1 Eggerthella lenta species 132 0 1 genus 447020 Adlercreutzia equolifaciens 1 species 446660 132 0 84162 1 genus 0 93 93 0 species Cryptobacterium curtum 1 84163 64 0 1 genus 84108 64 0 species 1 Slackia heliotrinireducens 84110 0 89 79603 genus 1 1 Denitrobacterium detoxificans species 79604 89 0 7 Acidimicrobiia class 84992 1104 1 0 1 0 7 1 1103 84993 order 6 Acidimicrobiales 0 1 4 248 84994 family 3 Acidimicrobiaceae 244 0 12 1 genus 2 Acidimicrobium 53634 1 Acidimicrobium ferrooxidans species 53635 232 0 848 0 family 2 2448023 0 1 5 848 682522 2 Ilumatobacter genus 0 843 467094 species Ilumatobacter coccineus 1 1497346 class 4 0 1227 588673 Solirubrobacterales 4 order 0 7 1 1227 3 Conexibacteraceae family 320583 1220 0 4 1 191494 genus 2 Conexibacter 0 6 1 1216 191495 1 Conexibacter woesei species 0 1210 0 3980 1297 33 phylum 3980 0 35 1 Deinococci 33 class 188787 2762275 2 order 0 218 2 family 332247 218 0 218 1 0 4 Truepera 2 genus 332248 0 214 332249 species 1 Truepera radiovictrix 1689 16 0 1 Thermales 15 order 68933 14 Thermaceae family 188786 1673 0 18 1 genus 1 186191 100 0 186192 species 1 Marinithermus hydrothermalis 0 100 296 0 1 2 3 Meiothermus genus 65551 species 1 Meiothermus ruber 277 155 0 52022 Meiothermus silvanus 1 species 0 139 genus 1 208447 188 0 0 188 187137 1 Oceanithermus profundus species 1071 0 32 1 Thermus 8 genus 270 0 83 37636 1 Thermus scotoductus species 0 98 56956 Thermus brockianus 1 species species Thermus aquaticus 1 271 129 0 0 103 2619321 no rank 1 103 0 species 1 Thermus sp. CCB_US3_UF1 1111069 274 species Thermus thermophilus 1 0 360 156 0 Thermus oshimai 1 species 56957 456163 species 1 Thermus parvatiensis 0 110 0 1 29 2038 118964 order 15 Deinococcales 0 5 1 2009 183710 family Deinococcaceae 14 1298 13 Deinococcus genus 0 1 34 2004 0 175 1768108 Deinococcus actinosclerus 1 species 1299 1 Deinococcus radiodurans species 0 165 species 1 Deinococcus deserti 310783 121 0 168 0 no rank 1 2623546 2080419 Deinococcus sp. NW-56 1 species 0 168 167 0 1 Deinococcus swuensis species 1182571 species 1 Deinococcus proteolyticus 55148 177 0 68909 species 1 Deinococcus geothermalis 0 140 species Deinococcus soli Cha et al. 2016 1 1309411 166 0 98 0 1 Deinococcus puniceus species 1182568 221 0 Deinococcus gobiensis 1 species 502394 species Deinococcus maricopensis 1 309887 187 0 432329 Deinococcus peraridilitoris 1 species 0 185 1 no rank 1859062 117 0 117 0 1 genus 262406 0 117 166501 Thermobaculum terrenum 1 species 359 clade 1783270 106776 0 0 226 456828 phylum 1 genus 1 456826 226 0 0 226 456827 1 Candidatus Cloacimonas acidaminovorans species 105247 0 345 clade 68336 21 phylum 1090 2410 0 191410 class 21 Chlorobia 0 8 1 2410 191411 20 Chlorobiales order 0 15 1 2402 191412 19 Chlorobiaceae family 1 0 31 2387 0 253 100715 1 genus 1 Chloroherpeton thalassium species 100716 253 0 256319 genus 4 Chlorobaculum 0 23 1 474 species 1 Chlorobaculum tepidum 1097 126 0 0 195 274537 Chlorobaculum limnaeum 1 species 130 0 species 1 Chlorobaculum parvum 274539 1111 0 8 no rank 274493 256 0 1 1 genus Pelodictyon 3 1099 101 0 species Pelodictyon luteolum 1 1100 species Pelodictyon phaeoclathratiforme 1 34090 154 0 855 0 1 10 genus Chlorobium 5 1091 1 Chlorobium chlorochromatii species 337090 190 0 1096 1 Chlorobium phaeobacteroides species 0 368 1094 species 1 Chlorobium phaeovibrioides 0 78 1 Chlorobium limicola species 1092 209 0 518 30 0 1 5 Prosthecochloris genus 1101 species 1 Prosthecochloris aestuarii 1102 134 0 354 0 no rank 3 2632826 126 0 species 1 Prosthecochloris sp. CIB 2401 1868325 281093 species 1 Prosthecochloris sp. GSB1 0 111 1974213 Prosthecochloris sp. HL-130-GSB 1 species 0 117 0 1 19 101695 976 319 Bacteroidetes phylum 69151 44 0 1 class Flavobacteriia 143 117743 69107 0 62 1 order 142 Flavobacteriales 200644 1 0 family 1 Cryomorphaceae 246874 1853230 2 family 0 409 0 3 1 409 332102 genus Fluviicola 2 191579 species Fluviicola taffensis 1 0 406 family 20 2762318 8759 0 0 372 1013 genus 1 0 372 1014 Weeksella virosa 1 species 2782232 no rank 10 0 4338 4139 0 39 1 Chryseobacterium 9 genus 59732 0 310 1324352 species 1 Chryseobacterium gallinarum 846 0 Chryseobacterium glaciei 1 species 1685010 1265445 species 1 Chryseobacterium camelliae 0 215 253 1 Chryseobacterium indologenes species 0 765 1473 0 no rank 3 2593645 0 543 2015076 species 1 Chryseobacterium sp. T16E-39 529 0 species Chryseobacterium sp. StRB126 1 878220 1 Chryseobacterium sp. IHB B 17019 species 1721091 401 0 0 491 558152 species 1 Chryseobacterium piperi 0 199 2782228 1 genus 199 0 species 1 Chryseobacterium taklimakanense 536441 1 genus 28250 309 0 28251 species Ornithobacterium rhinotracheale 1 0 309 308865 6 Elizabethkingia genus 0 37 1 3047 0 459 1756149 1 Elizabethkingia genomosp. 3 species 0 402 238 Elizabethkingia meningoseptica 1 species 1 Elizabethkingia anophelis species 1117645 1092 0 species 1 Elizabethkingia genomosp. 4 1756150 398 0 0 659 172045 species 1 Elizabethkingia miricola 0 1 1 693 34084 genus Riemerella 2 1 Riemerella anatipestifer species 34085 692 0 801 0 3 no rank 313602 1940138 1 genus 0 138 0 138 1415657 1 Candidatus Walczuchella monophlebidarum species Candidatus Sulcia 2 genus 336809 663 0 1 2 336810 Candidatus Sulcia muelleri 1 species 0 661 0 429 1333713 2 family 267986 genus 2 Owenweeksia 1 0 11 429 0 418 253245 species Owenweeksia hongkongensis 1 39782 family 10 Blattabacteriaceae 0 2 1 2944 2942 0 24 1 genus Blattabacterium 9 34098 0 2125 2647581 no rank 6 1 Blattabacterium sp. (Mastotermes darwiniensis) species 39768 280 0 species 1 Blattabacterium sp. (Blatta orientalis) 367806 333 0 366 0 1 Blattabacterium sp. (Periplaneta americana) species 367488 0 381 624186 1 Blattabacterium sp. (Blattella germanica) species 1 Blattabacterium sp. (Nauphoeta cinerea) species 1316444 393 0 372 0 species 1 Blattabacterium sp. (Blaberus giganteus) 1186051 372 0 species Blattabacterium punctulatus 1 164514 1653831 species 1 Blattabacterium cuenoti 0 421 245 0 1 55275 49546 Flavobacteriaceae 100 family 1204 0 17 1 genus Formosa 3 225842 2644710 no rank 2 0 1187 1336794 1 Formosa sp. Hel1_33_131 species 0 533 654 0 species 1 Formosa sp. Hel3_A1_48 1336795 Siansivirga 2 genus 1204360 781 0 1 1 Siansivirga zeaxanthinifaciens 1 species 762954 780 0 0 720 83612 1 genus 1 Psychroflexus torquis species 57029 720 0 genus 1 1209327 833 0 0 833 1803846 species 1 Flavivirga eckloniae 1 genus 178469 497 0 497 0 Arenibacter algicola 1 species 616991 153265 genus 1 0 495 0 495 101385 species Aequorivita sublithincola 1 52959 genus 6 Polaribacter 0 35 1 6053 196858 no rank 3 0 3361 0 1123 1529069 1 Polaribacter sp. BM10 species 313598 species 1 Polaribacter sp. MED152 0 1222 1016 0 1 Polaribacter sp. ALD11 species 2058137 0 1333 1774273 1 Polaribacter vadi species 1324 0 1 Polaribacter reichenbachii species 996801 0 1 41 2294 363408 genus Nonlabens 5 2615035 2 no rank 0 1077 1476901 species Nonlabens sp. MIC269 1 0 581 2058134 species Nonlabens sp. MB-3u-79 1 0 496 319236 species Nonlabens sediminis 1 0 616 328515 1 Nonlabens dokdonensis species 0 560 0 950 1649495 1 genus 950 0 no rank 1 2622645 Seonamhaeicola sp. S2-3 1 species 1936081 950 0 0 385 1176327 1 genus 385 0 1 no rank 2636237 0 385 2094025 Aureitalea sp. RR4-38 1 species 326319 Dokdonia 4 genus 1 0 4 1575 2615033 2 no rank 0 1020 983548 species Dokdonia sp. 4H-3-7-5 1 0 518 0 502 313590 Dokdonia sp. MED134 1 species Dokdonia donghaensis 1 species 326320 551 0 588 2 0 1 genus 3 Muricauda 111500 111501 Muricauda ruestringensis 1 species 0 348 0 238 516051 species Muricauda lutaonensis 1 genus 1 261827 941 0 1736674 species Algibacter alginicilyticus 1 0 941 2610 0 33 1 genus Maribacter 5 252356 2176 0 3 no rank 2615042 species Maribacter sp. 1_2014MBL_MicDiv 1 1644130 831 0 species Maribacter sp. T28 1 1836467 740 0 0 605 313603 species Maribacter sp. HTCC2170 1 0 401 1178778 Maribacter cobaltidurans 1 species 286104 Winogradskyella 3 genus 0 1 5 1985 0 1980 2615021 no rank 2 0 845 1936080 Winogradskyella sp. J14-2 1 species species 1 Winogradskyella sp. PG-2 754409 1135 0 6900 0 1 7 genus 9 Flavobacterium 237 species 1 Flavobacterium gilvum 1492737 627 0 Flavobacterium indicum 1 species 312277 912 0 0 1289 996 species Flavobacterium columnare 1 701 0 1 Flavobacterium psychrophilum species 96345 625 0 species 1 Flavobacterium branchiophilum 55197 629 0 Flavobacterium commune 1 species 1306519 1 Flavobacterium johnsoniae species 986 1697 0 413 0 species 1 Flavobacterium crassostreae 1763534 1 0 41 3771 1016 Capnocytophaga 15 genus 1 Capnocytophaga stomatis species 1848904 327 0 species Capnocytophaga canimorsus 1 28188 429 0 species 1 Capnocytophaga ochracea 1018 156 0 0 238 1017 species 1 Capnocytophaga gingivalis 0 180 327575 1 Capnocytophaga leadbetteri species 321 0 species 1 Capnocytophaga cynodegmi 28189 155 0 Capnocytophaga haemolytica 1 species 45243 Capnocytophaga sputigena 1 species 1019 544 0 6 no rank 2640652 1380 0 0 180 1316593 species 1 Capnocytophaga sp. oral taxon 864 1316596 species Capnocytophaga sp. oral taxon 878 1 0 286 0 156 1705617 1 Capnocytophaga sp. oral taxon 323 species 230 0 1 Capnocytophaga sp. ChDC OS43 species 209053 255 0 Capnocytophaga sp. H4358 1 species 1945658 0 273 1945657 1 Capnocytophaga sp. H2931 species genus 1 389486 316 0 2648869 1 no rank 0 316 1453352 Sediminicola sp. YIK13 1 species 0 316 1097 0 2 no rank 61432 0 895 1150389 species 1 Flavobacteriaceae bacterium UJ101 531844 species Flavobacteriaceae bacterium 3519-10 1 0 202 0 643 393005 genus 1 1 Tamlana sp. UJ94 species 2069432 643 0 0 201 252306 genus 1 0 201 252307 Robiginitalea biformata 1 species Lacinutrix 4 genus 291183 3008 1 0 34 2647285 2 no rank 0 2011 1 Lacinutrix sp. Bg11-31 species 2057808 1006 0 Lacinutrix sp. 5H-3-7-4 1 species 983544 1005 0 species 1 Lacinutrix venerupis 1486034 963 0 0 291 112040 genus 1 63186 species 1 Zobellia galactanivorans 0 291 4081 0 1 9 genus Tenacibaculum 5 104267 834 0 species 1 Tenacibaculum dicentrarchi 669041 0 1268 584609 species Tenacibaculum jejuense 1 107401 species Tenacibaculum maritimum 1 0 871 1099 0 Tenacibaculum todarodis 1 species 1850252 0 1293 2700084 genus 1 species 1 Lutibacter sp. LPB0138 1850246 1293 0 143222 genus 1 0 582 0 582 2633436 1 no rank 1 Salegentibacter sp. T436 species 1729720 582 0 0 780 216431 genus 1 species Croceibacter atlanticus 1 313588 780 0 1808 0 26 1 Myroides 5 genus 76831 450 0 1 Myroides profundi species 480520 472 0 1 Myroides odoratimimus species 76832 2642485 no rank 2 0 860 442 0 1 Myroides sp. A21 species 1583100 species 1 Myroides sp. ZB35 1458492 418 0 894 0 genus 1 1518147 Wenyingzhuangia fucanilytica 1 species 1790137 894 0 706 0 1 genus 417127 398743 1 Zunongwangia profunda species 0 706 292691 genus Gramella 5 0 4 1 1676 2126553 Gramella sp. SH35 1 species 0 404 441 0 species 1 Gramella sp. LPB0144 1913577 species 1 Gramella forsetii 411153 532 0 1 Gramella flava species 1486245 295 0 genus 2 Lutibacter 358023 1210 0 5 1 1622118 species 1 Lutibacter profundi 0 1205 0 14 1 3068 104264 genus 4 Cellulophaga 837 0 species Cellulophaga algicola 1 59600 979 1 Cellulophaga lytica species 0 1147 species Cellulophaga baltica 1 76594 1070 0 794 0 genus 1 336276 0 794 2615019 1 no rank 2058135 Olleya sp. Bg11-27 1 species 0 794 family Ichthyobacteriaceae 3 1755828 427 2 0 1 425 1 0 7 Ichthyobacterium 2 genus 1755829 242600 Ichthyobacterium seriolicida 1 species 0 418 65 Bacteroidia class 200643 8777 0 14 1 1829 0 6 1 order Marinilabiliales 11 1970189 1573805 family 2 Marinifilaceae 0 1 2 629 0 627 2060722 genus 1 627 0 species 1 Marinifilaceae bacterium SPP2 1717717 3 Salinivirgaceae family 1970190 388 0 1 1 5 0 1 387 1970191 genus 2 Salinivirga 0 382 1307839 species Salinivirga cyanobacteriivorans 1 3 0 1 451 1471398 family Prolixibacteraceae 3 genus 2 Draconibacterium 1471399 448 0 1 3 0 445 1168034 species 1 Draconibacterium orientale 0 355 558415 family 2 0 1 1 355 1193324 genus 2 Alkalitalea 354 0 species Alkalitalea saponilacus 1 889453 Bacteroidales 53 order 171549 6934 0 22 1 171 0 1 no rank 185291 1 Bacteroidales bacterium CF species 1400053 171 0 4 no rank 333046 1220 0 0 556 511434 1 genus 1 Candidatus Azobacteroides pseudotrichonymphae species 511435 556 0 664 0 genus 3 909656 1 Bacteroides dorei species 357276 219 0 821 Bacteroides vulgatus 1 species 0 210 1 Bacteroides salanitronis species 376805 235 0 5 family 2005520 591 0 0 2 1 154 294702 2 Proteiniphilum genus 1642647 species 1 Proteiniphilum saccharofermentans 0 152 0 1 1 134 307628 genus Petrimonas 2 133 0 Petrimonas mucosa 1 species 1642646 303 0 1 genus 1784836 0 303 1562970 1 Fermentimonas caenicola species 297 0 4 family 171550 0 2 1 169 239759 2 Alistipes genus 0 167 214856 species Alistipes finegoldii 1 1611681 genus Mucinivorans 2 0 5 1 128 Mucinivorans hirudinis 1 species 1433126 123 0 277 1 0 8 4 Porphyromonadaceae family 171551 836 genus 3 Porphyromonas 0 1 5 269 1 Porphyromonas gingivalis species 837 171 0 28123 species 1 Porphyromonas asaccharolytica 0 93 family 3 Paludibacteraceae 2005523 336 1 0 1 2 Paludibacter genus 346096 335 0 1 1 334 0 species Paludibacter propionicigenes 1 185300 171552 family Prevotellaceae 11 0 1 1 1457 1456 0 16 1 10 Prevotella genus 838 0 121 52227 species Prevotella dentalis 1 2638335 1 no rank 0 191 0 191 652716 1 Prevotella sp. oral taxon 299 species 1 Prevotella denticola species 28129 80 0 0 106 76123 species Prevotella enoeca 1 species Prevotella ruminicola 1 839 165 0 0 124 589436 species Prevotella fusca 1 Prevotella melaninogenica 1 species 28132 134 0 1177574 species 1 Prevotella jejuni 0 129 Prevotella intermedia 1 species 28131 390 0 0 2 1 599 2005525 7 Tannerellaceae family 3 Parabacteroides genus 375288 335 0 2 1 no rank 1 2649774 164 0 species Parabacteroides sp. CT06 1 2025876 164 0 0 169 823 species 1 Parabacteroides distasonis 195950 Tannerella 3 genus 0 4 1 262 131 0 no rank 1 2620507 131 0 Tannerella sp. oral taxon HOT-286 1 species 712710 0 127 28112 species 1 Tannerella forsythia 0 127 2005519 1 family 127 0 genus 1 397864 0 127 397865 species 1 Barnesiella viscericola 0 1618 815 10 family 1618 0 21 1 genus 10 Bacteroides 816 species 1 Bacteroides caecimuris 1796613 133 0 28113 species Bacteroides heparinolyticus 1 0 111 0 118 290053 1 Bacteroides helcogenes species 246787 Bacteroides cellulosilyticus 1 species 0 199 0 376 817 Bacteroides fragilis 1 species 0 184 28116 species Bacteroides ovatus 1 species Bacteroides caccae 1 47678 152 0 0 117 28119 species Bacteroides zoogleoformans 1 Bacteroides thetaiotaomicron 1 species 818 207 0 0 219 1853231 family 2 219 0 2 1 2 Odoribacter genus 283168 28118 species Odoribacter splanchnicus 1 0 217 0 9 1 1014 1100069 order Bacteroidetes Order II. Incertae sedis 5 4 0 1 1005 563843 4 Rhodothermaceae family genus 1 146918 253 0 253 0 1 Salinibacter ruber species 146919 1196022 no rank 1 0 405 1779382 species 1 Rhodothermaceae bacterium RA 0 405 0 343 29548 genus 1 343 0 species 1 Rhodothermus marinus 29549 class Saprospiria 5 1937959 792 0 1 1 0 791 1936988 4 order 0 529 1937961 2 family 2349 Haliscomenobacter 2 genus 0 1 1 529 Haliscomenobacter hydrossis 1 species 2350 528 0 2 family 89374 262 0 262 0 1 3 genus Saprospira 2 1007 259 0 species Saprospira grandis 1 1008 1853228 Chitinophagia 17 class 0 1 1 2293 12 0 1 2292 1853229 order Chitinophagales 16 family Chitinophagaceae 15 563835 2280 0 1 15 349 0 1 1 genus Flavisolibacter 2 398041 1492898 1 Flavisolibacter tropicus species 0 348 354354 2 Niastella genus 1 0 3 343 Niastella koreensis 1 species 354356 340 0 314 5 0 1 2 Filimonas genus 649460 species 1 Filimonas lacunae 477680 309 0 79328 Chitinophaga 3 genus 0 1 4 487 267 0 Chitinophaga pinensis 1 species 79329 species Chitinophagaceae bacterium 13 1 2029983 216 0 1769012 Arachidicoccus 2 genus 0 1 1 367 2636138 no rank 1 0 366 366 0 Arachidicoccus sp. BS20 1 species 1850526 genus 3 Niabella 379899 405 0 5 1 204 0 species 1 Niabella soli 446683 196 0 species 1 Niabella ginsenosidivorans 1176587 768503 class 59 Cytophagia 0 25 1 12993 36 0 1 12968 768507 Cytophagales 58 order 200667 family 4 Flammeovirgaceae 0 5 1 2275 0 10 1 928 59739 genus 2 Flammeovirga 1 no rank 2637820 918 0 918 0 1 Flammeovirga sp. MY04 species 1191459 1342 0 1 no rank 340671 0 1342 1257021 1 Flammeovirgaceae bacterium 311 species 2230 0 7 1 Cyclobacteriaceae 10 family 563798 genus 2 Echinicola 390846 263 1 0 2 261 0 1 Echinicola vietnamensis species 390884 0 7 1 642 232244 Belliella 2 genus 0 635 232259 1 Belliella baltica species 988 1 0 5 genus Cyclobacterium 3 68288 508 0 1 Cyclobacterium marinum species 104 species 1 Cyclobacterium amurskyense 320787 475 0 Algoriphagus 2 genus 246875 330 0 1 3 327 0 species Algoriphagus sp. M8-2 1 1727163 3 family 1501348 322 0 188 0 1 2 genus 2 Candidatus Amoebophilus 281119 0 186 281120 Candidatus Amoebophilus asiaticus 1 species genus 1 273135 134 0 134 0 1 no rank 2641185 134 0 species Cardinium endosymbiont of Encarsia pergandiella 1 249402 family 3 Persicobacteraceae 1853234 451 0 2 1 449 0 3 1 Persicobacter 2 genus 59740 1 no rank 2664020 446 0 446 0 species Persicobacter sp. JZB09 1 1085624 1029 4 0 1 3 Bernardetiaceae family 1937968 1 0 2 1025 1937972 2 Bernardetia genus species Bernardetia litoralis 1 999 1023 0 family 17 Cytophagaceae 89373 2727 1 0 4 genus Leadbetterella 2 319458 288 5 0 1 283 0 species Leadbetterella byssophila 1 316068 0 1 4 292 120831 genus Dyadobacter 2 0 288 94254 Dyadobacter fermentans 1 species 105 Runella 2 genus 1 0 1 386 0 385 106 Runella slithyformis 1 species 2 Cytophaga genus 978 445 0 1 14 985 Cytophaga hutchinsonii 1 species 0 431 genus 2 Fibrella 861914 166 0 1 1 1 no rank 2620963 165 0 165 0 species Fibrella sp. ES10-3-2-2 1 1834519 genus 6 Spirosoma 107 1146 0 1 12 species Spirosoma radiotolerans 1 1379870 225 0 564064 species Spirosoma rigui 1 0 193 2057025 species Spirosoma sp. HA7 1 0 308 1178516 Spirosoma montaniterrae 1 species 0 182 226 0 1 Spirosoma aerolatum species 1211326 7 0 1 3231 1853232 Hymenobacteraceae 16 family 323449 Pontibacter 3 genus 3 0 1 418 400092 Pontibacter korlensis 1 species 0 224 388950 species 1 Pontibacter akesuensis 0 191 7 0 1 756 1379908 genus 4 Rufibacter 2639626 2 no rank 0 453 0 206 1379909 species Rufibacter sp. DG15C 1 0 247 1379910 Rufibacter sp. DG31D 1 species 0 296 512763 species Rufibacter tibetensis 1 89966 genus 8 Hymenobacter 0 12 1 2050 0 276 1446467 species 1 Hymenobacter swuensis 1411621 1 Hymenobacter sedentarius species 0 295 1467 0 no rank 5 2615202 0 226 1385664 Hymenobacter sp. DG25B 1 species species 1 Hymenobacter sp. DG25A 1385663 164 0 1484116 Hymenobacter sp. PAMC 26554 1 species 0 368 381 0 Hymenobacter sp. PAMC 26628 1 species 1484118 1356852 species Hymenobacter sp. APR13 1 0 328 family 1 2762301 667 0 genus 1 869806 667 0 1006 species 1 Marivirga tractuosa 0 667 1 0 6 6656 117747 24 Sphingobacteriia class Sphingobacteriales 23 order 200666 6650 0 1 13 family 22 Sphingobacteriaceae 84566 6637 0 18 1 423349 4 Mucilaginibacter genus 1 0 7 935 2617802 1 no rank 0 272 species 1 Mucilaginibacter sp. PAMC 26640 1300914 272 0 1234841 1 Mucilaginibacter sp. BJC16-A31 species 0 288 species Mucilaginibacter gotjawali 1 1550579 368 0 1649482 Pseudopedobacter 2 genus 0 2 1 503 0 501 151895 1 Pseudopedobacter saltans species 0 1 21 2059 84567 genus Pedobacter 6 0 454 188932 species 1 Pedobacter cryoconitis 496 0 species Pedobacter ginsengisoli 1 363852 389 0 no rank 1 2628915 1727164 species 1 Pedobacter sp. PACM 27299 0 389 430522 species 1 Pedobacter steynii 0 367 332 0 Pedobacter heparinus 1 species 984 499 0 5 1 Solitalea 2 genus 929509 0 494 995 species 1 Solitalea canadensis 0 876 84568 1 no rank 876 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 species 1986952 genus Sphingobacterium 6 28453 1747 22 0 1 no rank 4 2609468 1429 0 1933220 species 1 Sphingobacterium sp. B29 0 388 Sphingobacterium sp. ML3W 1 species 1538644 414 0 1 Sphingobacterium sp. 21 species 743722 272 0 355 0 species Sphingobacterium sp. G1-14 1 2003121 species Sphingobacterium mizutaii 1 1010 296 0 1142 0 phylum 5 1134404 5 class 795747 1142 0 Ignavibacteriales 5 order 795748 1142 0 2 1 0 203 1334117 family 2 Melioribacter 2 genus 1134403 203 0 1 5 1134405 species Melioribacter roseus 1 0 198 795749 family 2 0 937 0 2 1 937 795750 genus 2 Ignavibacterium 0 935 591197 Ignavibacterium album 1 species phylum 8 142182 1010 0 8 Gemmatimonadetes class 219685 1010 0 7 1 1003 0 7 1 order Gemmatimonadales 7 219686 219687 6 Gemmatimonadaceae family 0 8 1 996 534 0 1 1 2 Gemmatirosa genus 1706036 0 533 861299 Gemmatirosa kalamazoonesis 1 species 173479 Gemmatimonas 3 genus 12 0 1 454 0 214 1379270 species Gemmatimonas phototrophica 1 173480 species 1 Gemmatimonas aurantiaca 0 228 65842 phylum 5 0 293 293 0 1 1 5 Fibrobacteria class 204430 Fibrobacterales 4 order 218872 292 1 0 1 family Fibrobacteraceae 3 204431 291 0 3 1 288 5 0 1 genus Fibrobacter 2 832 Fibrobacter succinogenes 1 species 833 283 0 0 355 1930617 4 phylum 1962850 class 4 Calditrichae 4 0 1 355 351 0 2 1 order Calditrichales 3 1962852 0 349 1962854 family 2 0 3 1 349 187144 genus 2 Caldithrix 346 0 species Caldithrix abyssi 1 187145 0 26396 2157 291 superkingdom 1783276 clade 1 0 27 1801631 phylum 1 0 27 27 0 genus 1 2490204 species 1 Candidatus Micrarchaeota archaeon Mia14 1920749 27 0 0 3877 1783275 clade 61 1985 0 46 phylum 28889 class Thermoprotei 46 183924 1985 1 0 1 0 388 114380 order 17 109 1 0 8 6 Pyrodictiaceae family 2307 genus Pyrodictium 2 2308 25 0 1 1 Pyrodictium delaneyi 1 species 1273541 24 0 1 genus 54251 25 0 species 1 Pyrolobus fumarii 54252 25 0 54247 genus 2 Hyperthermus 0 1 1 51 50 0 species 1 Hyperthermus butylicus 54248 0 1 3 279 2272 Desulfurococcaceae 11 family 0 6 1 154 2279 Staphylothermus 3 genus 1 Staphylothermus marinus species 2280 81 0 0 67 84599 species 1 Staphylothermus hellenicus 0 34 2273 2 genus 0 9 2275 Desulfurococcus mucosus 1 species 94694 species Desulfurococcus amylolyticus 1 0 25 12 0 genus 1 54253 species 1 Thermosphaera aggregans 54254 12 0 477695 genus 2 Thermogladius 0 1 6 23 1200300 species Thermogladius calderae 1 0 17 54258 genus 2 0 53 0 27 54259 species 1 Ignicoccus islandicus 160233 species 1 Ignicoccus hospitalis 0 26 Thermoproteales 14 order 2266 383 0 1 1 212 0 family 8 2267 0 44 76886 1 genus 76887 species Caldivirga maquilingensis 1 0 44 genus 3 Vulcanisaeta 164450 94 1 0 1 51 0 Vulcanisaeta moutnovskia 1 species 985052 164451 species Vulcanisaeta distributa 1 0 42 2270 3 Thermoproteus genus 1 0 1 47 species Thermoproteus tenax 1 2271 26 0 0 20 184117 1 Thermoproteus uzoniensis species 0 27 2276 genus 1 2277 Pyrobaculum islandicum 1 species 0 27 114378 5 family 0 170 2268 Thermofilum 5 genus 0 1 7 170 species Thermofilum uzonense 1 1550241 39 0 Thermofilum adornatus 1 species 1365176 38 0 39 0 species 1 Thermofilum carboxyditrophus 1483572 0 47 2269 species 1 Thermofilum pendens 192 0 3 order 871006 11 0 1 family 871007 11 0 genus 1 105850 11 0 species 1 Acidilobus saccharovorans 242703 0 3 1 181 255472 Caldisphaeraceae 2 family 0 178 200414 1 genus 0 178 200415 species Caldisphaera lagunensis 1 2281 11 order 0 1021 Sulfolobaceae 11 family 118883 1021 8 0 1 genus 3 Metallosphaera 41980 101 1 0 2 0 34 43687 1 Metallosphaera sedula species species 1 Metallosphaera cuprina 1006005 65 0 0 135 12914 1 genus 0 135 563177 Acidianus hospitalis 1 species 69655 1 genus 0 212 species Sulfolobus tokodaii 1 111955 212 0 135 0 1 genus 2100760 Sulfolobus solfataricus 1 species 2287 135 0 Sulfolobus 4 genus 2284 430 0 4 1 43080 species Sulfolobus islandicus 1 0 210 2641160 1 no rank 0 128 species 1 Sulfolobus sp. A20 1891280 128 0 0 88 2285 Sulfolobus acidocaldarius 1 species 0 26 51967 phylum 1 498845 genus 1 0 26 0 26 498846 1 Candidatus Korarchaeum cryptofilum species 651137 phylum 14 0 1866 5 Nitrososphaeria class 1643678 708 1 0 1 434 0 2 order 1968909 1968910 2 family 0 434 498374 2 Candidatus Nitrosocaldus genus 0 1 1 434 1 Candidatus Nitrosocaldus islandicus species 2045011 433 0 1033996 Nitrososphaerales 2 order 0 1 1 273 1 family 1033997 272 0 genus 1 497726 272 0 272 0 species Nitrososphaera viennensis 1 1034015 0 371 651142 no rank 4 245 1 0 1 Candidatus Nitrosopelagicus 2 genus 1593364 Candidatus Nitrosopelagicus brevis 1 species 1410606 244 0 1825023 2 genus 0 126 0 63 1603555 species Candidatus Nitrosotenuis cloacae 1 63 0 species Candidatus Nitrosotenuis sp. AQ6f 1 1846278 787 0 order 5 31932 family 5 338190 787 0 338191 3 Nitrosopumilus genus 1 0 2 438 1 Candidatus Nitrosopumilus adriaticus species 1580092 230 0 0 206 1229909 Candidatus Nitrosopumilus sediminis 1 species 349 0 1 1 2 Candidatus Nitrosomarinus genus 1993653 348 0 species Candidatus Nitrosomarinus catalina 1 1898749 28890 229 phylum 0 22492 22 clade 2283796 1790 0 183967 19 class 0 1585 1 no rank 1234666 124 0 0 124 1495144 species 1 methanogenic archaeon ISO4-H5 0 2 1 882 2301 order 13 Thermoplasmatales 2 family 1747776 187 0 genus 2 Cuniculiplasma 1747777 187 6 0 1 181 0 Cuniculiplasma divulgatum 1 species 1673428 0 149 1919231 1 no rank 1054217 Thermoplasmatales archaeon BRNA1 1 species 0 149 46630 family 2 0 133 133 0 1 2 2 Picrophilus genus 46631 1 Picrophilus torridus species 82076 131 0 90142 4 Ferroplasmaceae family 1 0 2 248 74968 genus Ferroplasma 3 1 0 4 246 97393 1 Ferroplasma acidarmanus species 0 136 106 0 species Ferroplasma acidiphilum 1 74969 163 0 3 family 46659 0 8 1 163 2302 genus Thermoplasma 3 0 61 2303 species 1 Thermoplasma acidophilum 94 0 Thermoplasma volcanium 1 species 50339 0 579 1235850 5 order 429 10 0 1 Methanomassiliicoccaceae 4 family 1577788 1 0 3 259 1080709 genus Methanomassiliicoccus 2 1406512 1 Candidatus Methanomassiliicoccus intestinalis species 0 256 0 160 1607807 1 genus 0 160 1577791 Candidatus Methanoplasma termitum 1 species 2517203 family 1 0 150 1291539 genus 1 0 150 150 0 Candidatus Methanomethylophilus alvus 1 species 1291540 0 205 1803510 clade 3 205 0 1 5 3 Aciduliprofundum genus 379546 no rank 1 2633939 96 0 0 96 673860 species Aciduliprofundum sp. MAR08-339 1 species Aciduliprofundum boonei 1 379547 104 0 6057 0 clade 43 2283794 0 1 3 3082 183925 class 26 Methanobacteria 4 0 1 3079 2158 25 Methanobacteriales order family 1 2178 225 0 225 0 genus 1 2179 species 1 Methanothermus fervidus 2180 225 0 1 0 1 2850 2159 23 Methanobacteriaceae family Methanobrevibacter 7 genus 2172 1453 1 0 5 190 0 species Methanobrevibacter ruminantium 1 83816 Methanobrevibacter millerae 1 species 230361 293 0 2173 species Methanobrevibacter smithii 1 0 259 294671 Methanobrevibacter olleyae 1 species 0 340 2 no rank 2638681 366 0 0 162 1609968 species Methanobrevibacter sp. YE315 1 224719 Methanobrevibacter sp. AbM4 1 species 0 204 Methanobacterium 8 genus 2160 844 0 12 1 0 172 877455 1 Methanobacterium lacus species 0 86 59277 species Methanobacterium subterraneum 1 160 0 Methanobacterium paludis 1 species 868131 0 159 2627676 2 no rank 0 74 1379702 species Methanobacterium sp. MB1 1 1911685 Methanobacterium sp. MZ-A1 1 species 0 85 118062 species Methanobacterium congolense 1 0 130 2162 Methanobacterium formicicum 1 species 0 125 145260 genus Methanothermobacter 5 0 12 1 234 60 0 Methanothermobacter wolfeii 1 species 145261 145263 species 1 Methanothermobacter marburgensis 0 60 42 0 1 Methanothermobacter thermautotrophicus species 145262 2631116 1 no rank 0 60 species Methanothermobacter sp. CaT2 1 866790 60 0 2316 2 Methanosphaera genus 0 1 1 318 0 317 2317 Methanosphaera stadtmanae 1 species class 17 Methanococci 183939 2975 0 2 1 Methanococcales 16 order 2182 2973 5 0 1 0 1365 196117 family 8 196119 1 genus 0 212 0 212 2189 species Methanotorris igneus 1 1153 5 0 1 genus 7 Methanocaldococcus 196118 2190 1 Methanocaldococcus jannaschii species 0 192 73913 species 1 Methanocaldococcus vulcanius 0 220 0 220 1301915 Methanocaldococcus bathoardescens 1 species 1 Methanocaldococcus infernus species 67760 127 0 0 207 83171 1 Methanocaldococcus fervens species no rank 1 2641196 182 0 0 182 644281 species Methanocaldococcus sp. FS406-22 1 1603 0 1 1 7 Methanococcaceae family 2183 1 genus 155862 158 0 species Methanothermococcus okinawensis 1 155863 158 0 1444 0 1 3 genus 5 Methanococcus 2184 0 201 42879 species 1 Methanococcus aeolicus 794 0 species Methanococcus maripaludis 1 39152 1 Methanococcus voltae species 2188 263 0 2187 species Methanococcus vannielii 1 0 183 12469 0 112 clade 2290931 class Halobacteria 63 183963 7568 0 13 1 0 21 1 2898 1644060 Natrialbales 19 order 14 0 1 2877 1644061 18 Natrialbaceae family 0 158 1269201 genus 1 158 0 1 no rank 2621923 Salinarchaeum sp. Harcht-Bsk1 1 species 1333523 158 0 1125 1 0 1 2 Natrialba genus 63742 0 1124 13769 1 Natrialba magadii species 254 0 1 1 genus 3 Natrinema 88723 2622230 1 no rank 0 129 406552 species 1 Natrinema sp. J7-2 0 129 124 0 1 Natrinema pellirubrum species 69525 2256 1 genus 0 131 131 0 Natronobacterium gregoryi 1 species 44930 2 Natronococcus genus 29287 164 1 0 1 29288 1 Natronococcus occultus species 0 163 387342 Halopiger 2 genus 0 1 3 194 species Halopiger xanaduensis 1 387343 191 0 0 304 203193 genus 1 species Halobiforma lacisalsi 1 229731 304 0 88 0 1 4 genus 2 Halostagnicola 353799 Halostagnicola larsenii 1 species 353800 84 0 0 1 3 445 121871 genus Haloterrigena 3 174 0 species Haloterrigena turkmenica 1 62320 268 0 Haloterrigena daqingensis 1 species 588898 1676 1 0 5 26 Halobacteriales order 2235 657 1 0 4 10 Halobacteriaceae family 2236 431 0 1 13 genus Halobacterium 4 2239 0 176 1407499 1 Halobacterium hubeiense species 1 Halobacterium salinarum species 2242 100 0 0 142 2668073 1 no rank species 1 Halobacterium sp. DL1 751944 142 0 1656823 genus 1 0 72 72 0 Halanaeroarchaeum sulfurireducens 1 species 1604004 0 1 2 61 1980514 genus 2 Halodesulfurarchaeum 59 0 species Halodesulfurarchaeum formicicum 1 1873524 genus 2 Halalkalicoccus 332246 89 1 0 2 Halalkalicoccus jeotgali 1 species 413810 87 0 1014 0 1 6 family Haloarculaceae 15 1963268 122 2 0 1 Halomicrobium 2 genus 203135 120 0 species 1 Halomicrobium mukohataei 57705 Halorhabdus 3 genus 146825 153 0 6 1 0 69 430914 species 1 Halorhabdus tiamatea 78 0 1 Halorhabdus utahensis species 146826 2 0 1 107 1073987 Halorientalis 2 genus 2648975 1 no rank 0 105 105 0 1 Halorientalis sp. IM1011 species 1932360 0 1 8 410 2237 genus 5 Haloarcula 1932004 Haloarcula taiwanensis 1 species 0 100 Haloarcula marismortui 1 species 2238 100 0 0 102 51589 species Haloarcula hispanica 1 0 100 2624677 1 no rank 0 100 1592728 Haloarcula sp. CBA1115 1 species 63743 genus 2 0 216 0 110 2257 1 Natronomonas pharaonis species 0 106 416273 species Natronomonas moolapensis 1 2981 20 0 1 Haloferacales 17 order 1644055 0 9 1 2121 1644056 family 9 Haloferacaceae 1347 0 5 1 2 Haloquadratum genus 293431 0 1342 293091 1 Haloquadratum walsbyi species 2 0 1 672 2251 genus Haloferax 4 Haloferax gibbonsii 1 species 35746 281 0 2252 1 Haloferax mediterranei species 0 140 species Haloferax volcanii 1 2246 249 0 93 1 0 6 genus Halogeometricum 2 60846 species 1 Halogeometricum borinquense 60847 87 0 2678336 no rank 1 0 121 121 0 species 1 halophilic archaeon DL31 756883 719 6 0 1 family 6 Halorubraceae 1963271 genus 3 Halorubrum 56688 337 0 4 1 species Halorubrum trapanicum 1 29284 189 0 0 144 2247 species 1 Halorubrum lacusprofundi 1209988 1 genus 0 156 0 156 1048396 1 Halopenitus persicus species 220 0 1 genus 1644057 755307 1 Salinigranum rubrum species 0 220 224756 Methanomicrobia 49 class 6 0 1 4901 0 242 570264 3 order 3 family 570265 242 0 242 0 1 20 3 Methanocella genus 570266 116 0 Methanocella arvoryzae 1 species 1175445 0 106 1175444 1 Methanocella conradii species 94695 order Methanosarcinales 28 0 3 1 3731 family 24 Methanosarcinaceae 2206 3453 11 0 1 2225 Methanococcoides 3 genus 0 1 1 249 29291 species 1 Methanococcoides burtonii 0 124 2226 1 Methanococcoides methylutens species 0 124 2445 0 16 1 Methanosarcina 13 genus 2207 165 0 species 1 Methanosarcina lacustris 170861 0 564 2644672 no rank 4 1 Methanosarcina sp. MTP4 species 1434100 189 0 1434103 species Methanosarcina sp. WWM596 1 0 117 1434102 Methanosarcina sp. WH1 1 species 0 114 0 144 1434099 species 1 Methanosarcina sp. Kolksee 0 141 2214 species 1 Methanosarcina acetivorans 0 139 2210 species 1 Methanosarcina thermophila species Methanosarcina vacuolata 1 2215 166 0 species Methanosarcina mazei 1 2209 265 0 species 1 Methanosarcina horonobensis 418008 177 0 0 550 2208 Methanosarcina barkeri 1 species species Methanosarcina siciliae 1 38027 262 0 2321 genus 1 0 198 198 0 species Methanohalobium evestigatum 1 2322 0 1 2 111 101191 Methanomethylovorans 2 genus 101192 species 1 Methanomethylovorans hollandica 0 109 genus 1 2220 64 0 420950 Methanolobus psychrophilus 1 species 0 64 196136 genus 1 0 163 0 163 39669 species 1 Methanosalsum zhilinae 2175 2 genus 0 212 2177 species Methanohalophilus halophilus 1 0 109 0 103 2176 Methanohalophilus mahii 1 species 0 275 143067 3 family 275 0 13 1 genus 3 Methanothrix 2222 Methanothrix soehngenii 1 species 2223 127 0 Methanosaeta harundinacea 1 species 301375 135 0 17 order 2191 922 0 2194 7 Methanomicrobiaceae family 0 1 4 398 45989 4 Methanoculleus genus 9 0 1 286 0 88 2619537 no rank 1 88 0 species 1 Methanoculleus sp. MAB1 86622 0 100 2198 1 Methanoculleus marisnigri species Methanoculleus bourgensis 1 species 83986 89 0 230355 genus Methanolacinia 2 0 7 1 108 101 0 1 Methanolacinia petrolearia species 54120 1198451 family Methanoregulaceae 6 1 0 11 318 395331 3 Methanoregula genus 0 6 1 170 882104 species 1 Methanoregula formicica 0 72 0 92 358766 1 Methanoregula boonei species genus Methanosphaerula 2 475087 137 0 5 1 0 132 475088 Methanosphaerula palustris 1 species 0 51 88404 2 family 51 0 5 1 Methanocorpusculum 2 genus 2192 46 0 Methanocorpusculum labreanum 1 species 83984 196137 family 2 0 155 0 13 1 155 2202 genus Methanospirillum 2 species 1 Methanospirillum hungatei 2203 142 0 183968 41 Thermococci class 0 1 1 1684 0 1 4 1683 2258 order 40 Thermococcales 2259 family Thermococcaceae 39 0 1 1 1679 332 0 8 1 genus Pyrococcus 8 2260 species 1 Pyrococcus yayanosii 1008460 32 0 species 1 Pyrococcus kukulkanii 1609559 34 0 37 0 species 1 Pyrococcus abyssi 29292 0 66 2261 species 1 Pyrococcus furiosus 0 119 2629106 2 no rank 1183377 species Pyrococcus sp. ST04 1 0 64 55 0 species Pyrococcus sp. NA2 1 342949 36 0 species 1 Pyrococcus horikoshii 53953 68 0 genus 1 83867 0 68 971279 1 Palaeococcus pacificus species 1278 0 21 1 Thermococcus 29 genus 2263 187880 1 Thermococcus radiotolerans species 0 37 311400 Thermococcus kodakarensis 1 species 0 21 0 67 582419 species 1 Thermococcus paralvinellae 0 21 277988 Thermococcus thioreducens 1 species 72803 species 1 Thermococcus siculi 0 204 49899 species Thermococcus profundus 1 0 36 2264 species Thermococcus celer 1 0 38 22 0 Thermococcus gammatolerans 1 species 187878 Thermococcus cleftensis 1 species 163003 30 0 species Thermococcus chitonophagus 1 54262 56 0 0 35 110164 Thermococcus guaymasensis 1 species 1 Thermococcus nautili species 195522 33 0 0 26 1505907 1 Thermococcus eurythermalis species Thermococcus litoralis 1 species 2265 76 0 species Thermococcus barophilus 1 55802 108 0 71998 Thermococcus pacificus 1 species 0 25 1 Thermococcus peptonophilus species 53952 22 0 71997 species Thermococcus gorgonarius 1 0 19 96 0 1 Thermococcus sibiricus species 172049 Thermococcus onnurineus 1 species 342948 26 0 17 0 Thermococcus barossii 1 species 54077 0 45 1712654 species Thermococcus piezophilus 1 no rank 6 2627626 197 0 23 0 species Thermococcus sp. P6 1 122420 26 0 1 Thermococcus sp. EXT12c species 2016361 0 23 2008440 1 Thermococcus sp. 5-4 species 0 37 246969 species Thermococcus sp. AM4 1 1042877 1 Thermococcus sp. 4557 species 0 33 0 55 1674923 species Thermococcus sp. 2319x1 1 183980 class 11 0 492 order 11 2231 492 0 492 0 5 1 Archaeoglobaceae 11 family 2232 genus Geoglobus 3 190818 134 0 1 1 0 66 565033 species Geoglobus acetivorans 1 1 Geoglobus ahangari species 113653 67 0 2 Ferroglobus genus 54260 55 0 1 1 54 0 species 1 Ferroglobus placidus 54261 5 Archaeoglobus genus 2233 298 4 0 1 species Archaeoglobus veneficus 1 58290 74 0 0 50 2234 species 1 Archaeoglobus fulgidus 0 90 84156 species Archaeoglobus profundus 1 0 80 1316941 species 1 Archaeoglobus sulfaticallidus name 1 0 0