members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4624 4843 4737048 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 30 0 27185 superkingdom 277 2157 28890 227 0 phylum 22808 40 183968 class 1967 0 1967 order 3 0 Thermococcales 1 40 2258 39 2259 Thermococcaceae 1 0 3 family 1964 Pyrococcus 1 8 2260 genus 367 0 3 species 61 0 Pyrococcus horikoshii 1 53953 Pyrococcus yayanosii 1008460 1 species 21 0 species 51 0 Pyrococcus kukulkanii 1609559 1 0 species 44 1 29292 Pyrococcus abyssi 113 no rank 0 2629106 2 0 68 species 1 1183377 Pyrococcus sp. ST04 1 342949 Pyrococcus sp. NA2 0 45 species 1 2261 Pyrococcus furiosus 0 species 74 2263 29 1 Thermococcus 0 22 genus 1504 27 species 0 Thermococcus kodakarensis 1 311400 species 31 0 Thermococcus barossii 1 54077 Thermococcus piezophilus 1 1712654 27 species 0 30 species 0 Thermococcus cleftensis 163003 1 9 species 0 Thermococcus peptonophilus 1 53952 0 no rank 199 6 2627626 Thermococcus sp. EXT12c 2016361 1 25 species 0 0 19 species 1 2008440 Thermococcus sp. 5-4 Thermococcus sp. AM4 246969 1 29 species 0 39 species 0 Thermococcus sp. 4557 1 1042877 1674923 1 Thermococcus sp. 2319x1 0 64 species 0 23 species 1 122420 Thermococcus sp. P6 0 species 25 110164 1 Thermococcus guaymasensis species 33 0 Thermococcus eurythermalis 1 1505907 Thermococcus profundus 1 49899 species 16 0 0 species 33 187878 1 Thermococcus gammatolerans 71997 1 Thermococcus gorgonarius 0 species 19 0 species 30 2264 1 Thermococcus celer 1 71998 Thermococcus pacificus 0 species 26 Thermococcus thioreducens 277988 1 species 37 0 37 species 0 Thermococcus nautili 1 195522 0 20 species 342948 1 Thermococcus onnurineus Thermococcus siculi 72803 1 species 441 0 species 55 0 Thermococcus litoralis 2265 1 120 species 0 Thermococcus barophilus 55802 1 0 species 101 172049 1 Thermococcus sibiricus 0 42 species 1 54262 Thermococcus chitonophagus 99 species 0 Thermococcus paralvinellae 1 582419 0 species 25 187880 1 Thermococcus radiotolerans 90 genus 0 83867 1 species 90 0 Palaeococcus pacificus 971279 1 2283794 44 0 clade 7215 Methanobacteria 1 25 183925 class 3495 1 0 order 3494 2 0 1 Methanobacteriales 2158 24 4 0 3264 family 2159 22 1 Methanobacteriaceae Methanothermobacter 1 5 145260 296 genus 0 7 species 64 0 Methanothermobacter thermautotrophicus 145262 1 1 145263 Methanothermobacter marburgensis 0 species 69 0 79 no rank 2631116 1 866790 1 Methanothermobacter sp. CaT2 0 species 79 0 species 77 145261 1 Methanothermobacter wolfeii 353 genus 0 1 2316 353 species 0 Methanosphaera stadtmanae 2317 1 1 Methanobacterium 2160 8 genus 1005 0 19 Methanobacterium lacus 877455 1 species 182 0 Methanobacterium paludis 868131 1 185 species 0 2162 1 Methanobacterium formicicum 0 species 159 0 species 109 59277 1 Methanobacterium subterraneum 0 species 162 1 118062 Methanobacterium congolense 0 no rank 189 2627676 2 1 1379702 Methanobacterium sp. MB1 0 species 91 Methanobacterium sp. MZ-A1 1 1911685 species 98 0 1 0 1606 genus 2172 7 1 Methanobrevibacter 1 230361 Methanobrevibacter millerae 0 species 257 294671 1 Methanobrevibacter olleyae 0 species 357 Methanobrevibacter smithii 1 2173 318 species 0 0 no rank 459 2638681 2 0 species 203 1 1609968 Methanobrevibacter sp. YE315 Methanobrevibacter sp. AbM4 1 224719 256 species 0 83816 1 Methanobrevibacter ruminantium 0 214 species family 228 0 1 2178 228 genus 0 2179 1 228 species 0 Methanothermus fervidus 2180 1 3720 class 4 0 Methanococci 1 19 183939 1 Methanococcales 2182 18 3716 order 1 0 family 2062 0 4 Methanococcaceae 1 7 2183 Methanococcus 1 5 2184 genus 1834 0 6 0 species 918 1 39152 Methanococcus maripaludis 0 375 species 1 2188 Methanococcus voltae 1 42879 Methanococcus aeolicus 0 species 270 Methanococcus vannielii 2187 1 species 265 0 0 genus 224 1 155862 Methanothermococcus okinawensis 155863 1 224 species 0 10 196117 Methanocaldococcaceae 1 4 0 1653 family 1387 genus 0 27 1 Methanocaldococcus 196118 7 1 1301915 Methanocaldococcus bathoardescens 0 256 species 208 species 0 Methanocaldococcus vulcanius 1 73913 67760 1 Methanocaldococcus infernus 0 178 species 245 species 0 Methanocaldococcus jannaschii 1 2190 2641196 1 0 229 no rank 0 species 229 1 644281 Methanocaldococcus sp. FS406-22 83171 1 Methanocaldococcus fervens 0 species 244 2 196119 Methanotorris 1 0 1 262 genus 0 261 species 1 2189 Methanotorris igneus 9 183980 class 531 0 0 order 531 9 2231 0 3 531 family 9 2232 Archaeoglobaceae 1 0 genus 71 54260 1 71 species 0 Ferroglobus placidus 1 54261 Archaeoglobus 1 5 2233 genus 339 0 6 Archaeoglobus profundus 1 84156 species 97 0 Archaeoglobus fulgidus 1 2234 59 species 0 58290 1 Archaeoglobus veneficus 0 species 67 110 species 0 Archaeoglobus sulfaticallidus 1316941 1 2 190818 0 118 genus Geoglobus acetivorans 565033 1 species 47 0 Geoglobus ahangari 1 113653 71 species 0 clade 10963 0 2290931 111 1 Halobacteria 183963 60 5472 class 0 21 1 Haloferacales 1644055 18 order 2248 25 0 103 no rank 0 2678336 1 0 103 species 1 756883 halophilic archaeon DL31 0 13 family 1658 1644056 9 1 Haloferacaceae 4 0 genus 112 60846 2 1 Halogeometricum 0 108 species 1 60847 Halogeometricum borinquense Haloferax 1 4 2251 genus 487 0 7 0 173 species 2246 1 Haloferax volcanii 192 species 0 Haloferax gibbonsii 1 35746 0 species 115 2252 1 Haloferax mediterranei genus 1046 1 0 Haloquadratum 1 2 293431 293091 1 Haloquadratum walsbyi 0 species 1045 0 6 family 462 1963271 7 1 Halorubraceae 56688 3 1 Halorubrum 0 3 236 genus 2247 1 Halorubrum lacusprofundi 0 species 87 29284 1 Halorubrum trapanicum 0 species 146 0 1 genus 88 1209988 2 1 Halopenitus Halopenitus persicus 1 1048396 87 species 0 132 genus 0 1644057 1 1 755307 Salinigranum rubrum 0 132 species 1179 order 10 0 1 Halobacteriales 2235 25 0 1 458 family 10 2236 Halobacteriaceae 1 33 genus 0 1656823 1 species 33 0 Halanaeroarchaeum sulfurireducens 1 1604004 2239 4 1 Halobacterium 0 8 genus 298 76 species 0 Halobacterium salinarum 2242 1 1 1407499 Halobacterium hubeiense 0 112 species 102 no rank 0 2668073 1 0 102 species 751944 1 Halobacterium sp. DL1 0 9 43 genus 1980514 2 1 Halodesulfurarchaeum 1 1873524 Halodesulfurarchaeum formicicum 0 34 species genus 83 1 0 Halalkalicoccus 1 2 332246 82 species 0 Halalkalicoccus jeotgali 413810 1 6 0 711 family 1963268 14 1 Haloarculaceae 1073987 1 88 genus 0 2648975 1 88 no rank 0 0 88 species 1932360 1 Halorientalis sp. IM1011 genus 300 2 0 Haloarcula 1 5 2237 Haloarcula marismortui 1 2238 70 species 0 no rank 73 0 1 2624677 1 1592728 Haloarcula sp. CBA1115 0 species 73 1 1932004 Haloarcula taiwanensis 0 90 species Haloarcula hispanica 51589 1 species 65 0 genus 85 0 1 1 Halomicrobium 203135 2 84 species 0 Halomicrobium mukohataei 57705 1 1 Halorhabdus 146825 3 111 genus 0 3 1 146826 Halorhabdus utahensis 0 species 68 species 40 0 Halorhabdus tiamatea 1 430914 2 63743 0 genus 121 Natronomonas pharaonis 2257 1 species 56 0 416273 1 Natronomonas moolapensis 0 65 species 1644060 16 1 Natrialbales 19 0 2024 order Natrialbaceae 1 15 1644061 family 2005 15 0 genus 180 0 1 Natrinema 1 3 88723 2622230 1 no rank 80 0 Natrinema sp. J7-2 406552 1 80 species 0 99 species 0 Natrinema pellirubrum 69525 1 196 genus 0 203193 1 Halobiforma lacisalsi 229731 1 196 species 0 0 genus 105 29287 1 Natronococcus occultus 29288 1 species 105 0 387342 2 1 Halopiger 0 2 genus 137 387343 1 Halopiger xanaduensis 0 species 135 103 genus 0 1 2256 species 103 0 Natronobacterium gregoryi 44930 1 genus 848 0 1 63742 species 848 0 Natrialba magadii 1 13769 0 2 genus 302 121871 3 1 Haloterrigena 193 species 0 Haloterrigena daqingensis 588898 1 62320 1 Haloterrigena turkmenica 0 species 107 53 genus 0 353799 1 1 353800 Halostagnicola larsenii 0 53 species 66 genus 0 1269201 1 0 66 no rank 1 2621923 1333523 1 Salinarchaeum sp. Harcht-Bsk1 0 species 66 class 5491 2 0 1 Methanomicrobia 224756 51 0 1 281 order 570264 5 1 Methanocellales family 280 0 3 Methanocellaceae 1 4 570265 3 570266 Methanocella 1 0 19 genus 277 0 162 species 1 1175445 Methanocella arvoryzae Methanocella conradii 1 1175444 species 96 0 927 order 5 0 Methanomicrobiales 1 18 2191 6 1198451 Methanoregulaceae 1 9 0 family 310 genus 126 0 5 1 Methanosphaerula 475087 2 0 121 species 475088 1 Methanosphaerula palustris 175 genus 0 10 Methanoregula 1 3 395331 Methanoregula formicica 1 882104 86 species 0 species 79 0 Methanoregula boonei 358766 1 2 88404 0 53 family 4 0 genus 53 2192 2 1 Methanocorpusculum species 49 0 Methanocorpusculum labreanum 1 83984 family 166 0 196137 2 2202 2 1 Methanospirillum 12 0 166 genus 154 species 0 Methanospirillum hungatei 1 2203 4 0 family 393 7 2194 Methanomicrobiaceae 1 0 10 genus 285 4 45989 Methanoculleus 1 no rank 90 0 1 2619537 0 90 species 86622 1 Methanoculleus sp. MAB1 0 89 species 83986 1 Methanoculleus bourgensis Methanoculleus marisnigri 2198 1 96 species 0 0 7 104 genus 230355 2 1 Methanolacinia 0 species 97 1 54120 Methanolacinia petrolearia order 4281 4 0 1 Methanosarcinales 94695 27 3 143067 312 family 0 0 13 312 genus 2222 3 1 Methanothrix 0 species 160 2223 1 Methanothrix soehngenii species 139 0 Methanosaeta harundinacea 1 301375 23 2206 Methanosarcinaceae 1 12 0 family 3965 304 genus 0 2 2225 165 species 0 Methanococcoides methylutens 1 2226 0 139 species 1 29291 Methanococcoides burtonii genus 249 0 1 2321 species 249 0 Methanohalobium evestigatum 1 2322 13 2207 Methanosarcina 1 0 8 2791 genus 1 2209 Methanosarcina mazei 0 319 species Methanosarcina lacustris 1 170861 174 species 0 1 2208 Methanosarcina barkeri 0 species 697 1 2210 Methanosarcina thermophila 0 140 species 151 species 0 Methanosarcina acetivorans 1 2214 4 2644672 613 no rank 0 0 species 146 1 1434103 Methanosarcina sp. WWM596 Methanosarcina sp. WH1 1434102 1 species 140 0 140 species 0 Methanosarcina sp. MTP4 1 1434100 Methanosarcina sp. Kolksee 1434099 1 187 species 0 Methanosarcina vacuolata 2215 1 species 193 0 1 418008 Methanosarcina horonobensis 0 species 160 38027 1 Methanosarcina siciliae 0 336 species 1 2220 78 genus 0 species 78 0 Methanolobus psychrophilus 1 420950 1 196136 168 genus 0 Methanosalsum zhilinae 39669 1 168 species 0 101191 2 1 Methanomethylovorans 3 0 136 genus 0 species 133 101192 1 Methanomethylovorans hollandica 2 2175 genus 227 0 2176 1 Methanohalophilus mahii 0 122 species 1 2177 Methanohalophilus halophilus 0 species 105 2132 clade 0 2283796 23 3 1803510 0 273 clade 0 6 genus 273 379546 3 1 Aciduliprofundum 1 2633939 0 no rank 115 Aciduliprofundum sp. MAR08-339 673860 1 115 species 0 152 species 0 Aciduliprofundum boonei 1 379547 1859 class 1 0 1 Thermoplasmata 183967 20 5 1235850 0 704 order 2517203 1 family 134 0 0 134 genus 1 1291539 1291540 1 Candidatus Methanomethylophilus alvus 0 134 species 1577788 4 1 Methanomassiliicoccaceae 0 12 family 570 0 2 382 genus 2 1080709 Methanomassiliicoccus 1 Candidatus Methanomassiliicoccus intestinalis 1406512 1 380 species 0 1 1607807 0 genus 176 1577791 1 Candidatus Methanoplasma termitum 0 176 species 0 4 979 order 13 2301 Thermoplasmatales 1 0 1 227 family 4 46659 Thermoplasmataceae 1 1 Thermoplasma 2302 3 genus 226 6 0 Thermoplasma acidophilum 2303 1 species 91 0 species 129 0 Thermoplasma volcanium 1 50339 1747776 2 1 Cuniculiplasmataceae 3 0 176 family 1 1747777 173 genus 0 Cuniculiplasma divulgatum 1 1673428 173 species 0 1919231 1 169 no rank 0 1 1054217 Thermoplasmatales archaeon BRNA1 0 169 species 118 family 0 2 46630 118 genus 0 3 Picrophilus 1 2 46631 115 species 0 Picrophilus torridus 1 82076 0 285 family 3 90142 genus 285 0 6 1 Ferroplasma 74968 3 1 74969 Ferroplasma acidiphilum 0 species 131 1 97393 Ferroplasma acidarmanus 0 148 species 0 no rank 175 1 1234666 methanogenic archaeon ISO4-H5 1 1495144 species 175 0 34 clade 0 1 1783276 1801631 1 0 34 phylum 2490204 1 0 genus 34 Candidatus Micrarchaeota archaeon Mia14 1920749 1 34 species 0 1783275 49 0 clade 4343 51967 1 0 28 phylum 28 genus 0 498845 1 28 species 0 Candidatus Korarchaeum cryptofilum 1 498846 35 28889 0 2164 phylum 3 0 2164 class 183924 35 1 Thermoprotei 0 208 order 2 871006 871007 1 0 13 family 0 13 genus 105850 1 species 13 0 Acidilobus saccharovorans 242703 1 255472 1 family 195 0 195 genus 0 1 200414 Caldisphaera lagunensis 200415 1 195 species 0 0 409 order 11 2266 2267 6 family 262 0 0 70 genus 2270 2 Thermoproteus uzoniensis 1 184117 species 37 0 0 33 species 1 2271 Thermoproteus tenax 164450 2 0 genus 113 0 62 species 985052 1 Vulcanisaeta moutnovskia 0 51 species 1 164451 Vulcanisaeta distributa 46 genus 0 1 76886 46 species 0 Caldivirga maquilingensis 76887 1 genus 33 0 2276 1 Pyrobaculum islandicum 2277 1 species 33 0 0 family 147 5 114378 Thermofilum 1 5 2268 genus 147 5 0 1 1483572 Thermofilum carboxyditrophus 0 species 30 0 39 species 1 2269 Thermofilum pendens species 42 0 Thermofilum adornatus 1365176 1 Thermofilum uzonense 1 1550241 31 species 0 11 114380 0 order 368 family 71 0 2307 3 0 22 genus 1 54251 54252 1 Pyrolobus fumarii 0 22 species 0 18 genus 1 2308 1273541 1 Pyrodictium delaneyi 0 18 species 54247 1 0 genus 31 Hyperthermus butylicus 54248 1 31 species 0 297 family 0 2272 8 43 genus 0 54258 2 1 54259 Ignicoccus islandicus 0 species 21 22 species 0 Ignicoccus hospitalis 160233 1 2 2273 genus 48 0 11 species 0 Desulfurococcus mucosus 2275 1 Desulfurococcus amylolyticus 94694 1 species 37 0 477695 1 0 19 genus species 19 0 Thermogladius calderae 1 1200300 2279 2 0 175 genus 84599 1 Staphylothermus hellenicus 0 65 species species 110 0 Staphylothermus marinus 1 2280 12 genus 0 1 54253 1 54254 Thermosphaera aggregans 0 12 species order 1176 0 2281 10 10 118883 1176 family 0 Sulfolobus 1 4 2284 genus 511 0 4 0 no rank 180 1 2641160 species 180 0 Sulfolobus sp. A20 1 1891280 species 222 0 Sulfolobus islandicus 1 43080 2285 1 Sulfolobus acidocaldarius 0 species 105 2100760 1 0 170 genus species 170 0 Sulfolobus solfataricus 2287 1 2 41980 90 genus 0 1 43687 Metallosphaera sedula 0 35 species species 55 0 Metallosphaera cuprina 1006005 1 0 1 genus 146 2 12914 Acidianus 1 1 563177 Acidianus hospitalis 0 145 species 69655 1 genus 259 0 Sulfolobus tokodaii 111955 1 259 species 0 0 2151 phylum 651137 13 no rank 464 0 4 651142 0 190 genus 1825023 2 Candidatus Nitrosotenuis sp. AQ6f 1 1846278 91 species 0 99 species 0 Candidatus Nitrosotenuis cloacae 1 1603555 Candidatus Nitrosopelagicus 1 2 1593364 genus 274 5 0 1410606 1 Candidatus Nitrosopelagicus brevis 0 species 269 order 934 0 4 31932 934 family 0 4 338190 6 0 genus 547 338191 3 1 Nitrosopumilus 0 282 species 1 1229909 Candidatus Nitrosopumilus sediminis 0 259 species 1580092 1 Candidatus Nitrosopumilus adriaticus 1 1993653 genus 387 0 Candidatus Nitrosomarinus catalina 1 1898749 species 387 0 2 0 class 753 1643678 5 1 Nitrososphaeria 1 0 528 order 2 1968909 Candidatus Nitrosocaldales 1 0 family 527 1 1968910 0 527 genus 1 498374 0 527 species 1 2045011 Candidatus Nitrosocaldus islandicus 1 0 223 order 1033996 2 1 Nitrososphaerales 1 1033997 0 222 family 1 497726 222 genus 0 Nitrososphaera viennensis 1 1034015 species 222 0 4705020 superkingdom 15 0 1 Bacteria 2 4316 26 200783 0 4132 phylum 26 187857 Aquificae 1 9 0 class 4132 0 1 596 order 6 1485951 Desulfurobacteriales 1 10 0 595 family 5 558314 Desulfurobacteriaceae 1 1 Desulfurobacterium 64159 2 529 genus 4 0 Desulfurobacterium thermolithotrophum 64160 1 525 species 0 2 171868 Thermovibrio 1 1 0 genus 56 55 species 0 Thermovibrio ammonificans 1 228745 0 14 3527 order 19 32069 Aquificales 1 0 no rank 146 1 90150 0 genus 146 412592 1 146 species 0 Thermosulfidibacter takaii 1 412593 0 3 1617 family 6 224027 Hydrogenothermaceae 1 genus 1208 13 0 Sulfurihydrogenibium 1 3 212790 1 2619248 0 637 no rank Sulfurihydrogenibium sp. YO3AOP1 1 436114 species 637 0 Sulfurihydrogenibium azorense 1 309806 558 species 0 2 182899 Persephonella 1 0 3 406 genus Persephonella marina 1 309805 species 403 0 0 4 1750 family 11 64898 Aquificaceae 1 1 2713 82 genus 0 Aquifex aeolicus 1 63363 species 82 0 75905 2 0 138 genus 0 species 78 1 136094 Thermocrinis albus 1 75906 Thermocrinis ruber 0 60 species 1 939 0 genus 93 0 species 93 940 1 Hydrogenobacter thermophilus 1 Hydrogenobaculum 168657 6 genus 1433 0 35 no rank 1398 0 5 2622382 0 285 species 547143 1 Hydrogenobaculum sp. 3684 Hydrogenobaculum sp. SN 1 547146 species 285 0 0 species 285 547144 1 Hydrogenobaculum sp. HO Hydrogenobaculum sp. Y04AAS1 1 380749 species 258 0 547145 1 Hydrogenobaculum sp. SHO 0 285 species 0 phylum 12813 203691 56 Spirochaetia 1 56 203692 12813 class 0 24 order 2053 0 1643688 8 1 Leptospiraceae 170 8 family 2053 0 7 1 338321 0 genus 137 species 137 0 Turneriella parva 29510 1 Leptospira 1 6 171 1909 genus 0 8 28183 1 Leptospira santarosai 0 species 170 Leptospira borgpetersenii 174 1 species 292 0 Leptospira biflexa 1 172 species 338 0 Leptospira interrogans 173 1 901 species 0 28452 1 Leptospira alstonii 0 200 species 1 Brachyspirales 1643686 7 order 3258 2 0 Brachyspiraceae 1 6 143786 family 3256 0 1 3255 genus 0 20 1 Brachyspira 29521 5 826 species 0 Brachyspira intermedia 1 84377 159 1 Brachyspira hyodysenteriae 0 820 species 937 species 0 Brachyspira pilosicoli 52584 1 0 species 652 84378 1 Brachyspira murdochii 1 Spirochaetales 136 40 7478 order 20 0 0 4 family 2367 137 22 1 Spirochaetaceae 0 1 genus 223 4 399320 Sphaerochaeta 1 species 58 0 Sphaerochaeta globosa 1 1131703 1131707 1 Sphaerochaeta pleomorpha 0 103 species species 61 0 Sphaerochaeta coccoides 1 273376 Salinispira 1 2 1616789 244 genus 0 1 Salinispira pacifica 1 1307761 243 species 0 0 142 genus 1911556 1 Sediminispirochaeta smaragdinae 55206 1 142 species 0 0 1 genus 1489 157 12 1 Treponema 0 78 species 1 53435 Treponema paraluiscuniculi Treponema pedis 409322 1 229 species 0 150829 1 Treponema azotonutricium 0 88 species 0 species 167 215591 1 Treponema caldarium 1 81028 Treponema brennaborense 0 74 species Treponema primitia 88058 1 155 species 0 0 200 species 1 221027 Treponema putidum 2638727 1 85 no rank 0 Treponema sp. OMZ 838 1 1539298 species 85 0 0 species 159 158 1 Treponema denticola species 68 0 Treponema pallidum 160 1 0 185 species 1 167 Treponema succinifaciens 0 265 genus 146 2 species 151 0 Spirochaeta africana 1 46355 Spirochaeta thermophila 154 1 species 114 0 17 1643685 Borreliaceae 1 12 0 5091 family 8 64895 Borreliella 1 0 146 genus 2316 64897 1 Borreliella bissettii 0 293 species species 218 0 Borreliella valaisiana 1 62088 1 29518 Borreliella afzelii 0 species 301 Borrelia mayonii 1 1674146 329 species 0 325 species 0 Borreliella burgdorferi 1 139 Borreliella bavariensis 664662 1 206 species 0 29519 1 Borreliella garinii 0 498 species 8 138 Borrelia 1 0 62 genus 2763 0 279 species 1 140 Borrelia hermsii species 265 0 Borrelia turicatae 1 142 47466 1 Borrelia miyamotoi 0 631 species 407 species 0 Borrelia recurrentis 44449 1 Borrelia parkeri 1 141 253 species 0 species 621 0 Borrelia duttonii 1 40834 Borrelia anserina 1 143 245 species 0 clade 8727 0 84 1783257 203682 32 3916 phylum 0 203683 22 1 Planctomycetia 11 0 class 2341 3 2691354 0 520 order 2691357 2 0 family 408 1 265488 0 207 genus 0 species 207 265606 1 Rhodopirellula baltica 0 genus 201 123 1 0 species 201 1 125 Pirellula staleyi 0 family 112 2691358 1 1676125 1 112 genus 0 species 112 0 Thermogutta terrifontis 1 1331910 5 2691356 0 order 606 0 6 family 606 1763524 5 1 Isosphaeraceae 1 466152 genus 206 0 206 species 0 Singulisphaera acidiphila 466153 1 Paludisphaera 1 2 1763521 genus 258 1 0 257 species 0 Paludisphaera borealis 1387353 1 1 127 0 136 genus species 136 0 Isosphaera pallida 1 128 0 29 order 1012 112 10 1 Planctomycetales Planctomycetaceae 1 9 126 family 983 0 10 2 1649490 Rubinisphaera 1 0 1 genus 211 0 210 species 119 1 Rubinisphaera brasiliensis genus 223 0 1 Fuerstia 1 2 1936111 0 species 222 1891926 1 Fuerstia marisgermanicae 0 105 genus 1649480 1 105 species 0 Planctopirus limnophila 120 1 7 0 genus 434 3 118 Planctomyces 1 2648843 2 427 no rank 0 species 235 0 Planctomyces sp. SH-PL62 1 1636152 Planctomyces sp. SH-PL14 1632864 1 species 192 0 2691355 3 0 192 order Gemmataceae 1 3 1914233 192 family 1 0 Gemmata 1 2 113 191 genus 2 0 2622970 1 189 no rank 0 Gemmata sp. SH-PL17 1 1630693 189 species 0 0 5 486 class 6 666505 Phycisphaerae 1 0 order 216 2 2483366 2483367 2 family 216 0 2483368 2 0 216 genus 0 101 species 1940790 1 Phycisphaerae bacterium L21-RPul-D3 1941349 1 Phycisphaerae bacterium ST-PulAB-D4 0 115 species 0 6 265 order 3 666506 Phycisphaerales 1 1 Phycisphaeraceae 666507 2 family 259 1 0 1 666508 0 258 genus 1 547188 Phycisphaera mikurensis 0 258 species 0 class 1089 2517206 4 1127829 4 1 Candidatus Brocadiales 0 2 1089 order 1127830 3 1 Candidatus Brocadiaceae 1 0 1087 family 0 3 1086 genus 2 380738 Candidatus Kuenenia 1 Candidatus Kuenenia stuttgartiensis 174633 1 species 1083 0 phylum 2192 1 0 1 Verrucomicrobia 74201 24 1116 class 0 3 Opitutae 1 9 414999 3 415001 0 441 order 0 2 441 family 415002 3 1 Puniceicoccaceae 2 0 439 genus 442430 2 1 Coraliomargarita 0 species 437 1 395922 Coraliomargarita akajimensis order 672 4 0 Opitutales 1 5 415000 5 0 family 668 134623 4 1 Opitutaceae 0 164 genus 1 1961799 1 1838286 Lacunisphaera limnophila 0 164 species 1 178440 genus 220 0 Opitutus terrae 1 107709 220 species 0 278955 1 0 no rank 279 794903 1 Opitutaceae bacterium TAV5 0 species 279 0 307 no rank 2 417295 species 153 0 Verrucomicrobia bacterium 2026799 1 1 1637999 Verrucomicrobia bacterium IMCC26134 0 species 154 5 203494 Verrucomicrobiae 1 3 0 class 287 7 0 order 284 4 48461 Verrucomicrobiales 1 3 1647988 0 family 277 5 0 genus 277 239934 3 1 Akkermansia Akkermansia glycaniphila 1679444 1 141 species 0 1 239935 Akkermansia muciniphila 0 species 131 class 411 0 1 Methylacidiphilae 1 4 1955630 3 717963 0 order 410 3 717964 410 family 0 1 Methylacidiphilum 511745 3 genus 410 0 3 species 149 0 Methylacidiphilum infernorum 511746 1 species 258 0 Methylacidiphilum fumariolicum 1 591154 class 70 0 1 1 Spartobacteria 134549 3 genus 69 0 1 1 Candidatus Xiphinematobacter 134550 2 68 no rank 0 2648876 1 species 68 0 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 1 0 phylum 149 2 256845 149 class 4 0 Lentisphaeria 1 2 1313211 0 order 145 278082 1 no rank 145 0 1 1674876 Victivallales bacterium CCUG 44730 2094242 1 145 species 0 phylum 2298 0 204428 22 6 0 class 2298 22 204429 Chlamydiia 1 order 674 0 2 Parachlamydiales 1 7 1963360 152 family 0 1 92712 1 34093 152 genus 0 Simkania negevensis 1 83561 species 152 0 0 399 family 92713 4 282132 2 1 Candidatus Protochlamydia 0 2 genus 170 Candidatus Protochlamydia naegleriophila 389348 1 168 species 0 229 genus 0 2 Parachlamydia 1 2 83551 1 83552 Parachlamydia acanthamoebae 0 species 227 1 92714 family 121 0 genus 121 0 1 71666 121 species 0 Waddlia chondrophila 71667 1 Chlamydiales 1 14 51291 1618 order 0 5 family 1613 0 3 Chlamydiaceae 1 13 809 0 no rank 1610 1113537 12 genus 1610 16 0 Chlamydia 1 12 810 Chlamydia felis 83556 1 169 species 0 0 species 93 83559 1 Chlamydia suis Chlamydia trachomatis 813 1 species 103 0 Chlamydia pecorum 1 85991 149 species 0 83558 1 Chlamydia pneumoniae 0 141 species 0 species 112 83560 1 Chlamydia muridarum Chlamydia abortus 83555 1 151 species 0 153 species 0 Chlamydia gallinacea 1 1457153 0 species 161 1457141 1 Chlamydia avium species 186 0 Chlamydia psittaci 1 83554 0 species 176 1 83557 Chlamydia caviae 4 134625 0 172 phylum 1921781 4 0 class 172 0 1 172 order 4 1921782 Kiritimatiellales 1 3 1921783 Kiritimatiellaceae 1 2 0 family 171 genus 169 1 0 1 Kiritimatiella 1921784 2 0 168 species 1 1307763 Kiritimatiella glycovorans 0 phylum 18012 32066 24 24 203490 Fusobacteriia 1 0 23 class 18012 203491 23 1 Fusobacteriales 26 0 order 17989 203492 11 1 Fusobacteriaceae 13 0 family 13739 0 512 genus 1 167639 Ilyobacter polytropus 167642 1 512 species 0 13214 genus 0 51 1 Fusobacterium 848 9 4916 species 0 Fusobacterium nucleatum 851 1 Fusobacterium varium 1 856 1714 species 0 Fusobacterium ulcerans 861 1 856 species 0 species 819 0 Fusobacterium mortiferum 1 850 Fusobacterium hwasookii 1583098 1 species 1512 0 0 species 500 1 849 Fusobacterium gonidiaformans 1 859 Fusobacterium necrophorum 0 species 301 0 species 2545 860 1 Fusobacterium periodonticum 11 1129771 Leptotrichiaceae 1 0 10 4224 family 2452 genus 0 14 Leptotrichia 1 5 32067 1763 no rank 0 2633022 3 Leptotrichia sp. oral taxon 498 1 712368 624 species 0 633 species 0 Leptotrichia sp. oral taxon 847 1 1785996 Leptotrichia sp. oral taxon 212 712357 1 species 506 0 Leptotrichia buccalis 1 40542 675 species 0 genus 521 0 2 1 Sneathia 168808 2 0 519 species 1 187101 Sneathia amnii 0 genus 707 1 34104 1 34105 Streptobacillus moniliformis 0 707 species 534 genus 0 2 Sebaldella 1 2 32068 532 species 0 Sebaldella termitidis 1 826 phylum 1432 0 13 40117 203693 13 1 Nitrospira 11 0 1432 class order 1421 9 0 1 Nitrospirales 189778 12 189779 11 1 Nitrospiraceae 0 9 1412 family 1 Nitrospira 1234 5 genus 375 7 0 95 species 0 Nitrospira japonica 1 1325564 Nitrospira moscoviensis 1 42253 species 110 0 species 75 0 Candidatus Nitrospira inopinata 1715989 1 1 330214 Nitrospira defluvii 0 88 species 283 genus 2 0 Leptospirillum 1 4 179 261385 1 0 species group 81 1 1660083 Leptospirillum sp. Group II 'CF-1' 0 species 81 261386 1 0 69 species group Leptospirillum ferriphilum 1 178606 species 69 0 0 131 species group 1 655606 Leptospirillum ferrooxidans 180 1 131 species 0 1 28261 0 745 genus species 745 0 Thermodesulfovibrio yellowstonii 28262 1 42 200918 6622 phylum 0 1 Thermotogae 188708 42 class 6622 14 0 Thermotogales 1 28 2419 order 3937 0 9 1346 family 4 0 1 Thermotogaceae 188709 17 11 2335 Thermotoga 1 24 0 670 genus 2631113 4 181 no rank 0 126740 1 Thermotoga sp. RQ2 0 species 39 0 species 38 1 1157947 Thermotoga sp. Cell2 species 67 0 Thermotoga sp. RQ7 126738 1 37 species 0 Thermotoga sp. 2812B 1157948 1 0 species 34 93929 1 Thermotoga petrophila 50 species 0 Thermotoga caldifontis 1 1508419 93930 1 Thermotoga naphthophila 0 33 species 61 species 0 Thermotoga maritima 1 2336 1 2337 Thermotoga neapolitana 0 75 species 1508420 1 Thermotoga profunda 0 species 212 672 genus 0 5 1 Pseudothermotoga 1643951 5 38322 1 Pseudothermotoga elfii 0 218 species 0 181 species 119394 1 Pseudothermotoga thermarum 52 species 0 Pseudothermotoga hypogea 1 57487 Pseudothermotoga lettingae 177758 1 species 216 0 1 Fervidobacteriaceae 1643950 10 family 2582 8 0 genus 664 12 0 Fervidobacterium 1 4 2422 Fervidobacterium pennivorans 1 93466 272 species 0 Fervidobacterium nodosum 1 2424 265 species 0 species 115 0 Fervidobacterium islandicum 2423 1 1910 genus 18 0 1 Thermosipho 2420 5 2676525 2 0 866 no rank 1437364 1 Thermosipho sp. 1070 0 species 437 1 1462747 Thermosipho sp. 1063 0 species 429 species 556 0 Thermosipho africanus 1 2421 0 species 470 1 46541 Thermosipho melanesiensis 0 4 order 2168 1643947 8 1 Petrotogales 2164 family 0 1643949 7 160798 3 1 Marinitoga 0 12 1302 genus Marinitoga piezophila 149715 1 665 species 0 no rank 625 0 1 2640159 Marinitoga sp. 1137 1545835 1 species 625 0 508 genus 0 1 Defluviitoga 1 2 1511648 Defluviitoga tunisiensis 1 1006576 507 species 0 1 Petrotoga 28236 2 genus 354 0 1 0 species 353 1 69499 Petrotoga mobilis 1 Kosmotogales 1643946 5 order 503 0 3 family 500 0 1643948 4 1184396 1 0 genus 147 1 1184387 Mesotoga prima 0 147 species 1 Kosmotoga 651456 3 genus 353 1 0 1 1330330 Kosmotoga pacifica 0 212 species Kosmotoga olearia 1 651457 species 140 0 6 68297 phylum 876 0 203486 6 1 Dictyoglomia 5 0 class 876 1 Dictyoglomales 203487 5 871 order 2 0 203488 4 1 Dictyoglomaceae 3 0 869 family 866 genus 0 3 1 Dictyoglomus 13 3 species 415 0 Dictyoglomus thermophilum 14 1 species 448 0 Dictyoglomus turgidum 1 513050 1642 1783272 0 3896871 clade phylum 130 0 67819 5 5 1663419 Fimbriimonadia 1 0 2 130 class 1 Fimbriimonadales 1663425 4 order 128 0 2 126 family 3 0 1 Fimbriimonadaceae 1663426 3 0 3 genus 123 1005038 2 1 Fimbriimonas 0 120 species 1005039 1 Fimbriimonas ginsengisoli 1 1859062 0 100 no rank 100 genus 0 1 262406 1 166501 Thermobaculum terrenum 0 100 species 1 Tenericutes 544448 102 phylum 25451 2 0 0 431 no rank 2 2799557 genus 431 3 0 1 Candidatus Izimaplasma 1912503 2 2624196 1 no rank 428 0 0 species 428 1541959 1 Candidatus Izimaplasma sp. HR1 713063 2 869 no rank 0 0 species 401 1 1911683 Tenericutes bacterium MZ-XQ 0 species 468 1 1911684 Tenericutes bacterium MO-XQ 0 55 24149 class 97 31969 Mollicutes 1 0 32 11120 order 44 2085 Mycoplasmatales 1 17 0 family 11088 43 2092 Mycoplasmataceae 1 12 2767358 3362 genus 0 Mycoplasma arginini 1 2094 species 263 0 1 29553 Mycoplasma bovirhinis 0 185 species Mycoplasma agalactiae 2110 1 species 339 0 1 28903 Mycoplasma bovis 0 species 554 1 171284 Mycoplasma cynos 0 307 species 304 species 0 Mycoplasma fermentans 2115 1 0 284 species 2107 1 Mycoplasma pulmonis 218 species 0 Mycoplasma synoviae 1 2109 Mycoplasma canis 29555 1 308 species 0 species 201 0 Mycoplasma bovigenitalium 2112 1 0 173 species 2113 1 Mycoplasma californicum 0 species 226 48003 1 Mycoplasma pullorum 1 0 514 genus 2129 3 1 Ureaplasma 2130 1 Ureaplasma urealyticum 0 244 species 0 species 269 1 134821 Ureaplasma parvum 91 0 genus 7195 2093 27 1 Mycoplasma 1 2099 Mycoplasma hyopneumoniae 0 406 species 181 species 0 Mycoplasma genitalium 1 2097 2100 1 Mycoplasma hyorhinis 0 species 289 species 253 0 Mycoplasma haemofelis 29501 1 0 350 species 2118 1 Mycoplasma mobile Mycoplasma canadense 29554 1 247 species 0 Mycoplasma putrefaciens 2123 1 322 species 0 0 species 133 1 57372 Mycoplasma suis 160 species 0 Mycoplasma parvum 1 984991 1 2104 Mycoplasma pneumoniae 0 species 47 Mycoplasma gallisepticum 2096 1 species 216 0 2111 1 Mycoplasma arthritidis 0 128 species 173 species 0 Mycoplasma dispar 86660 1 0 species 66 1 65123 Mycoplasma wenyonii 0 species 365 28227 1 Mycoplasma penetrans 0 405 species 1 2098 Mycoplasma hominis 0 1807 species group 656088 3 2102 1 Mycoplasma mycoides 0 818 species 0 456 species 1 2105 Mycoplasma leachii 0 533 species 2095 1 Mycoplasma capricolum 1 50052 Mycoplasma crocodyli 0 species 290 species 162 0 Mycoplasma flocculare 2128 1 0 species 252 45362 1 Mycoplasma bovoculi Mycoplasma yeatsii 51365 1 330 species 0 171632 1 Mycoplasma ovis 0 species 98 no rank 257 0 2683645 1 0 species 257 1749074 1 Mycoplasma sp. (ex Biomphalaria glabrata) 136241 1 Mycoplasma haemocanis 0 167 species order 2400 0 9 1 Acholeplasmatales 186329 13 5 0 2391 family 2146 12 1 Acholeplasmataceae Candidatus Phytoplasma 1 6 33926 1140 genus 0 10 1 85632 246 species group 0 1 59748 Candidatus Phytoplasma australiense 0 246 species 3 85620 0 622 species group Onion yellows phytoplasma 100379 1 species 222 0 0 214 species 229545 1 Aster yellows witches'-broom phytoplasma Maize bushy stunt phytoplasma 202462 1 species 186 0 0 262 species group 85630 1 Candidatus Phytoplasma mali 1 37692 species 262 0 12 0 genus 1246 2147 5 1 Acholeplasma Acholeplasma laidlawii 1 2148 species 297 0 0 species 438 1 38986 Acholeplasma palmae 1 35623 Acholeplasma oculi 0 303 species species 196 0 Acholeplasma brassicae 1 61635 1 Entomoplasmatales 186328 39 10574 order 0 13 family 3193 4 0 Entomoplasmataceae 1 14 33925 genus 2181 0 46 1 Mesoplasma 46239 8 Mesoplasma coleopterae 1 324078 species 285 0 219745 1 Mesoplasma tabanidae 0 260 species 2149 1 Mesoplasma entomophilum 0 species 267 species 182 0 Mesoplasma lactucae 138853 1 species 244 0 Mesoplasma syrphidae 225999 1 species 312 0 Mesoplasma chauliocola 1 216427 species 585 0 Mesoplasma florum 2151 1 1008 genus 0 6 Entomoplasma 1 5 46238 0 species 230 1 214888 Entomoplasma luminosum Entomoplasma somnilux 215578 1 species 286 0 Entomoplasma melaleucae 81459 1 371 species 0 1 74700 Entomoplasma freundtii 0 species 115 14 0 7368 family 2131 24 1 Spiroplasmataceae 0 78 genus 7354 2132 23 1 Spiroplasma 216936 1 Spiroplasma diminutum 0 406 species 1 2139 Spiroplasma clarkii 0 289 species 2136 1 Spiroplasma monobiae 0 species 318 216934 1 Spiroplasma corruscae 0 species 357 216946 1 Spiroplasma turonicum 0 species 409 0 233 species 1 216933 Spiroplasma chrysopicola 1 216944 Spiroplasma sabaudiense 0 species 227 Spiroplasma taiwanense 1 2145 species 493 0 0 447 species 362837 1 Spiroplasma cantharicola Spiroplasma syrphidicola 1 216945 246 species 0 Spiroplasma citri 2133 1 species 322 0 0 species 458 1 216937 Spiroplasma floricola 1 2144 Spiroplasma mirum 0 species 197 0 species 368 1 216938 Spiroplasma helicoides 1 47834 Spiroplasma kunkelii 0 species 344 Spiroplasma litorale 216942 1 species 448 0 244 species 0 Spiroplasma eriocheiris 1 315358 0 251 species 2137 1 Spiroplasma apis 1 216935 Spiroplasma culicicola 0 species 434 2 2637901 no rank 580 0 290 species 0 Spiroplasma sp. NBRC 100390 1 1914410 1898044 1 Spiroplasma sp. TU-14 0 species 290 0 species 205 1114980 1 Spiroplasma atrichopogonis phylum 80810 7 0 1 Actinobacteria 201174 628 0 592 no rank 1752188 4 Actinobacteria bacterium IMCC19121 1848754 1 258 species 0 1848755 1 Actinobacteria bacterium IMCC26077 0 species 102 140 species 0 Actinobacteria bacterium IMCC26103 1848756 1 Actinobacteria bacterium IMCC25003 1848255 1 species 92 0 1 Acidimicrobiia 84992 7 757 class 0 1 5 0 756 order 84993 6 1 Acidimicrobiales 171 family 4 0 1 Acidimicrobiaceae 84994 3 167 genus 0 8 Acidimicrobium 1 2 53634 1 53635 Acidimicrobium ferrooxidans 0 species 159 2448023 2 580 family 0 2 682522 Ilumatobacter 1 8 0 genus 580 0 572 species 1 467094 Ilumatobacter coccineus 0 2 class 803 1497346 5 1 Thermoleophilia 1 Solirubrobacterales 588673 4 order 801 6 0 4 0 family 795 320583 3 1 Conexibacteraceae 2 191494 Conexibacter 1 2 0 genus 791 0 789 species 191495 1 Conexibacter woesei 30 84998 Coriobacteriia 1 0 12 1592 class order 600 2 0 1 Coriobacteriales 84999 14 84107 6 1 Coriobacteriaceae 2 0 family 177 84113 1 no rank 71 0 Coriobacteriaceae bacterium 68-1-3 1 1531429 species 71 0 0 1 genus 59 2 102106 Collinsella 1 0 species 58 74426 1 Collinsella aerofaciens 0 2 genus 45 33870 2 1 Coriobacterium 0 43 species 33871 1 Coriobacterium glomerans 7 1643824 Atopobiaceae 1 0 5 421 family 0 genus 3 1 1380 Atopobium 2767353 1 genus 127 0 1382 1 Atopobium parvulum 0 species 127 286 genus 5 0 1 Olsenella 133925 4 83 species 0 Olsenella uli 133926 1 1 2638792 0 no rank 101 0 101 species 1 712411 Olsenella sp. oral taxon 807 species 97 0 Olsenella sp. Marseille-P2300 1 1805478 980 order 7 0 1 Eggerthellales 1643822 15 Eggerthellaceae 1 14 1643826 973 family 13 0 genus 263 7 0 1 Gordonibacter 644652 3 125 species 0 Gordonibacter massiliensis 1841863 1 1335613 1 Gordonibacter urolithinfaciens 0 species 131 0 genus 50 84108 1 50 species 0 Slackia heliotrinireducens 84110 1 69 genus 0 1 84162 Cryptobacterium curtum 1 84163 species 69 0 2 1981050 Phoenicibacter 1 0 1 genus 192 1944646 1 Phoenicibacter massiliensis 0 191 species 90 genus 0 1 447020 0 90 species 1 446660 Adlercreutzia equolifaciens 79603 2 1 Denitrobacterium 0 1 71 genus 1 79604 Denitrobacterium detoxificans 0 species 70 84111 3 1 Eggerthella 7 0 225 genus 2648737 1 no rank 71 0 species 71 0 Eggerthella sp. YY7918 1 502558 species 147 0 Eggerthella lenta 1 84112 1760 575 1 Actinobacteria 318 0 76833 class order 6466 12 0 1 Pseudonocardiales 85010 39 6454 family 72 0 1 Pseudonocardiaceae 2070 38 39 0 genus 1636 8 1847 Pseudonocardia 1 0 1350 no rank 2619320 6 1 1096856 Pseudonocardia sp. EC080619-01 0 229 species 0 species 261 445576 1 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. EC080625-04 1 1096868 202 species 0 243 species 0 Pseudonocardia sp. HH130630-07 1 1690815 Pseudonocardia sp. HH130629-09 1 1641402 species 178 0 1 1688404 Pseudonocardia sp. EC080610-09 0 species 237 0 247 species 1 240495 Pseudonocardia dioxanivorans 0 genus 287 1 2029 860235 1 Kibdelosporangium phytohabitans 0 287 species 0 genus 125 1851 1 1 1852 Saccharomonospora viridis 0 125 species 1 Saccharopolyspora 1835 2 234 genus 0 2 232 species 0 Saccharopolyspora erythraea 1 1836 1 Amycolatopsis 1813 7 genus 1639 20 0 Amycolatopsis mediterranei 33910 1 species 282 0 0 199 species 1 1814 Amycolatopsis methanolica Amycolatopsis japonica 208439 1 species 261 0 species 401 0 Amycolatopsis orientalis 1 31958 2 2618356 no rank 476 0 0 261 species 1 1911175 Amycolatopsis sp. BJA-103 1896961 1 Amycolatopsis sp. AA4 0 215 species Alloactinosynnema 1 2 674734 genus 191 0 1 no rank 190 0 1 2636053 1653480 1 Alloactinosynnema sp. L-07 0 190 species 503 genus 0 3 1 Actinosynnema 40566 3 0 species 248 42197 1 Actinosynnema pretiosum Actinosynnema mirum 1 40567 252 species 0 2 43356 Kutzneria 1 4 0 225 genus species 221 0 Kutzneria albida 43357 1 Actinoalloteichus 1 6 65496 916 genus 0 22 0 326 no rank 2644606 2 species 140 0 Actinoalloteichus sp. AHMU CJ021 2072503 1 species 186 0 Actinoalloteichus sp. GBA129-24 1612551 1 0 species 237 1612552 1 Actinoalloteichus sp. ADI127-7 1 340345 Actinoalloteichus hymeniacidonis 0 128 species Actinoalloteichus hoggarensis 1 1470176 203 species 0 1 2071 0 225 genus 0 species 225 103731 1 Saccharothrix espanaensis 123 genus 0 2 1 Prauserella 142577 2 1 530584 Prauserella marina 0 species 121 278 genus 4 0 Lentzea 1 2 165301 Lentzea guizhouensis 1586287 1 species 274 0 0 23 1685 order 15 85012 Streptosporangiales 1 3 0 family 694 83676 6 1 Nocardiopsaceae 1 83677 89 genus 0 Thermobifida fusca 1 2021 89 species 0 4 2013 Nocardiopsis 1 11 0 genus 602 0 species 168 1 53437 Nocardiopsis alba 2014 1 Nocardiopsis dassonvillei 0 232 species species 191 0 Nocardiopsis gilva 280236 1 family 216 0 1 1 Thermomonosporaceae 2012 3 genus 215 0 8 Thermomonospora 1 2 2019 1 2020 Thermomonospora curvata 0 species 207 Streptosporangiaceae 1 5 2004 family 752 0 7 331 genus 0 10 Streptosporangium 1 2 2000 0 species 321 1 2001 Streptosporangium roseum 2 83681 Nonomuraea 1 7 0 414 genus 2593643 1 407 no rank 0 1909395 1 Nonomuraea sp. ATCC 55076 0 species 407 0 36 23423 order 85011 82 1 Streptomycetales family 23387 79 0 1 Streptomycetaceae 2062 81 9 0 genus 1482 5 2063 Kitasatospora 1 Kitasatospora aureofaciens 1 1894 species 194 0 1 2633591 288 no rank 0 Kitasatospora sp. MMS16-BH015 1 2018025 288 species 0 species 566 0 Kitasatospora albolonga 1 68173 Kitasatospora setae 1 2066 species 425 0 Streptomyces 1 75 1883 21826 genus 0 386 1 285473 Streptomyces rubrolavendulae 0 183 species 38300 1 Streptomyces pristinaespiralis 0 223 species 1930 1 Streptomyces scabiei 0 species 311 Streptomyces avermitilis 1 33903 species 304 0 0 species 253 1 1889 Streptomyces ambofaciens Streptomyces pratensis 1169025 1 species 169 0 5835 no rank 0 24 2593676 Streptomyces sp. 4F 1 1751294 169 species 0 1961713 1 Streptomyces sp. MOE7 0 species 207 Streptomyces sp. Sge12 1972846 1 269 species 0 444103 1 Streptomyces sp. CNQ-509 0 263 species 1849967 1 Streptomyces sp. SAT1 0 species 332 272 species 0 Streptomyces sp. CMB-StM0423 1 2059884 1 234612 Streptomyces sp. TN58 0 species 193 species 274 0 Streptomyces sp. Mg1 1 465541 248 species 0 Streptomyces sp. fd1-xmd 1812480 1 162 species 0 Streptomyces sp. S8 1837283 1 1964449 1 Streptomyces sp. 3211 0 296 species Streptomyces sp. PAMC 26508 1 1265601 species 172 0 0 195 species 1661694 1 Streptomyces sp. Tue 6075 Streptomyces sp. CCM_MD2014 1561022 1 species 189 0 1 2135430 Streptomyces sp. P3 0 316 species 0 species 252 1 1262452 Streptomyces sp. 769 239 species 0 Streptomyces sp. RTd22 1841249 1 1 1984801 Streptomyces sp. CLI2509 0 species 241 Streptomyces sp. CdTB01 1725411 1 species 259 0 Streptomyces sp. CFMR 7 1 1649184 208 species 0 Streptomyces sp. WAC00288 2094021 1 species 258 0 369 species 0 Streptomyces sp. M56 1495638 1 862751 1 Streptomyces sp. SirexAA-E 0 135 species 317 species 0 Streptomyces sp. FR-008 1 206662 species 203 0 Streptomyces puniciscabiei 1 164348 Streptomyces formicae 1616117 1 species 392 0 Streptomyces sp. XZHG99 1 2049881 217 species 0 1 1916 Streptomyces lividans 0 species 240 Streptomyces reticuli 1926 1 species 230 0 species 695 0 Streptomyces albus 1888 1 54571 1 Streptomyces venezuelae 0 503 species Streptomyces malaysiensis 1 92644 species 304 0 155 species 0 Streptomyces pluripotens 1 1355015 0 159 species 408015 1 Streptomyces xiamenensis 2 629295 0 species group 431 231 species subgroup 0 1482558 1 1 1908 Streptomyces globisporus 0 231 species species subgroup 200 0 1 1482596 Streptomyces griseus 1911 1 species 200 0 Streptomyces violaceusniger 68280 1 245 species 0 Streptomyces niveus 193462 1 216 species 0 1950 1 Streptomyces peucetius 0 186 species Streptomyces clavuligerus 1 1901 218 species 0 0 211 species 29303 1 Streptomyces cattleya 197 species 0 Streptomyces griseochromogenes 1 68214 68192 1 Streptomyces cyaneogriseus 0 174 species 1642299 1 Streptomyces alfalfae 0 285 species 259 species 0 Streptomyces noursei 1971 1 Streptomyces leeuwenhoekii 1437453 1 193 species 0 species 499 0 Streptomyces pactum 1 68249 0 1165 species 1 68570 Streptomyces albulus 1969 1 Streptomyces chartreusis 0 species 184 1 1914 Streptomyces lavendulae 0 species 287 2 1477431 991 species group 0 791 species 0 Streptomyces coelicolor 1902 1 1 42239 Streptomyces sampsonii 0 200 species 0 177 species 146923 1 Streptomyces parvulus 241 species 0 Streptomyces alboflavus 1 67267 1907 1 Streptomyces glaucescens 0 species 219 species 203 0 Streptomyces albireticuli 1940 1 0 630 species 47763 1 Streptomyces lydicus species 196 0 Streptomyces xinghaiensis 1 1038928 68202 1 Streptomyces fulvissimus 0 species 201 75293 1 Streptomyces autolyticus 0 species 1138 1 1912 Streptomyces hygroscopicus 0 species 605 Streptomyces vietnamensis 362257 1 291 species 0 Streptomyces sp. S10(2016) 1 1783515 species 227 0 species 219 0 Streptomyces gilvosporeus 553510 1 1 1935 Streptomyces violaceoruber 0 146 species Streptomyces collinus 42684 1 species 221 0 Streptomyces bingchenggensis 1 379067 342 species 0 267 species 0 Streptomyces lincolnensis 1915 1 0 2 order 753 414714 4 1 Catenulisporales 1 Catenulisporaceae 414877 3 family 751 7 0 0 6 genus 744 2 414878 Catenulispora 1 1 304895 Catenulispora acidiphila 0 species 738 201 order 1 0 1 Kineosporiales 622452 3 family 200 0 83778 2 1 Kineococcus 33981 2 genus 200 0 4 species 196 0 Kineococcus radiotolerans 1 131568 85008 20 1 Micromonosporales 0 6 order 2890 family 2884 54 0 1 Micromonosporaceae 28056 19 4 1873 Micromonospora 1 8 0 554 genus Verrucosispora maris 1 1003110 159 species 0 0 206 no rank 2617518 1 Micromonospora sp. L5 648999 1 206 species 0 181 species 0 Micromonospora aurantiaca 1 47850 673534 4 1 Plantactinospora 0 10 740 genus 730 no rank 0 2631981 3 Plantactinospora sp. BC1 1 2108470 217 species 0 0 250 species 1 2024580 Plantactinospora sp. KBS50 0 species 263 2071627 1 Plantactinospora sp. BB1 17 0 1292 genus 1865 6 1 Actinoplanes species 220 0 Actinoplanes friuliensis 1 196914 Actinoplanes missouriensis 1866 1 264 species 0 791 no rank 0 3 2626549 Actinoplanes sp. N902-109 649831 1 223 species 0 Actinoplanes sp. SE50 1 2033844 284 species 0 Actinoplanes sp. SE50/110 1 134676 284 species 0 6 0 243 genus 3 168694 Salinispora 1 Salinispora tropica 168695 1 130 species 0 0 species 107 1 168697 Salinispora arenicola 0 1 genus 1 84593 Verrucosispora 1643818 2 0 163 no rank 1 Thermobispora 147067 2 163 genus 0 2 0 species 161 1 2006 Thermobispora bispora 226 order 0 3 85014 1 Glycomycetaceae 85034 3 226 family 0 16 3 0 210 genus 2 283810 Stackebrandtia 1 0 207 species 1 283811 Stackebrandtia nassauensis 52018 1 0 no rank 248 0 248 species 1 1650658 Actinobacteria bacterium IMCC26256 2 622450 113 order 0 0 family 113 622451 2 1 Actinopolyspora 1849 2 113 genus 0 4 Actinopolyspora erythraea 414996 1 species 109 0 1 Geodermatophilales 1643682 8 608 order 1 0 family 607 0 27 1 Geodermatophilaceae 85030 7 genus 173 0 1 Blastococcus 1 2 38501 138336 1 Blastococcus saxobsidens 0 species 172 Modestobacter 1 2 88138 genus 168 0 3 Modestobacter marinus 477641 1 species 165 0 genus 239 1 0 Geodermatophilus 1 2 1860 Geodermatophilus obscurus 1861 1 238 species 0 1 Micrococcales 85006 133 order 11866 66 0 family 1014 2 0 Dermabacteraceae 1 11 85020 genus 42 2 0 1 Dermabacter 36739 2 0 40 species 1 1630135 Dermabacter vaginalis 43668 6 1 Brachybacterium 0 14 890 genus 2623841 1 no rank 126 0 1 1903186 Brachybacterium sp. P6-10-X1 0 species 126 140 species 0 Brachybacterium faecium 43669 1 0 118 species 1 1331682 Brachybacterium ginsengisoli 2017484 1 Brachybacterium sp. VM2412 0 358 species 2017485 1 Brachybacterium sp. VR2415 0 134 species 6 0 80 genus 472568 2 1 Devriesea 472569 1 Devriesea agamarum 0 species 74 3095 family 29 0 Micrococcaceae 1 39 1268 0 38 genus 1649 1663 15 1 Arthrobacter 0 1299 no rank 12 235627 Arthrobacter sp. YN 2020486 1 species 72 0 1806905 1 Arthrobacter sp. ZXY-2 0 78 species 0 281 species 2079227 1 Arthrobacter sp. PGP41 0 98 species 1 1690248 Arthrobacter sp. LS16 0 species 79 1 1494608 Arthrobacter sp. PAMC 25486 species 88 0 Arthrobacter sp. FB24 290399 1 1 1704044 Arthrobacter sp. ERGS1:01 0 139 species 104 species 0 Arthrobacter sp. U41 1 1849032 77 species 0 Arthrobacter sp. ATCC 21022 1 1771959 species 100 0 Arthrobacter sp. YC-RL1 1652545 1 1357915 1 Arthrobacter sp. QXT-31 0 species 93 Arthrobacter sp. Rue61a 1 1118963 90 species 0 Arthrobacter alpinus 656366 1 species 178 0 Arthrobacter crystallopoietes 1 37928 species 134 0 1742992 1 121 genus 0 species 121 0 Paenarthrobacter aurescens 43663 1 0 1 141 genus 3 32207 Rothia 1 2047 1 Rothia dentocariosa 0 51 species 0 89 species 43675 1 Rothia mucilaginosa genus 348 0 4 1 Pseudarthrobacter 1742993 4 0 species 91 1 121292 Pseudarthrobacter sulfonivorans Pseudarthrobacter chlorophenolicus 85085 1 species 110 0 Pseudarthrobacter phenanthrenivorans 361575 1 143 species 0 120 genus 0 3 Glutamicibacter 1 2 1742989 0 117 species 1 256701 Glutamicibacter arilaitensis 63 genus 0 2078575 1 1 1618207 Arthrobacter sp. IHBB 11108 0 63 species 1868332 2 1 Neomicrococcus 2 0 genus 82 1 556325 Neomicrococcus aestuarii 0 80 species 1269 2 1 Micrococcus 0 4 107 genus 1270 1 Micrococcus luteus 0 103 species 5 0 265 genus 4 57493 Kocuria 1 species 71 0 Kocuria palustris 71999 1 0 137 species 1 446860 Kocuria flava Kocuria rhizophila 72000 1 52 species 0 2 596707 Sinomonas 1 2 0 137 genus Sinomonas atrocyanea 37927 1 species 135 0 Renibacterium 1 2 1645 33 genus 1 0 32 species 0 Renibacterium salmoninarum 1 1646 Beutenbergiaceae 1 3 125316 family 183 3 0 84756 2 1 Beutenbergia 3 0 180 genus 177 species 0 Beutenbergia cavernae 84757 1 1 Cellulomonadaceae 85016 6 660 family 2 0 5 1707 Cellulomonas 1 0 8 658 genus 0 169 no rank 2620175 1 0 species 169 1 2003551 Cellulomonas sp. PSBB021 species 133 0 Cellulomonas gilvus 1 11 1708 1 Cellulomonas fimi 0 192 species species 156 0 Cellulomonas flavigena 1711 1 Dermacoccaceae 1 7 145357 family 392 0 4 0 2 133 genus 57495 2 1 Dermacoccus Dermacoccus nishinomiyaensis 1274 1 131 species 0 57499 2 1 Kytococcus 0 3 genus 90 Kytococcus sedentarius 1 1276 species 87 0 Luteipulveratus 1 2 745364 165 genus 4 0 161 species 0 Luteipulveratus mongoliensis 1 571913 0 57 family 85022 1 genus 57 0 43673 1 43674 1 Jonesia denitrificans 0 species 57 no rank 75 0 577468 1 0 genus 75 2038 1 1 2039 Tropheryma whipplei 0 species 75 family 4446 39 0 Microbacteriaceae 1 41 85023 240 genus 0 110932 1 1575 1 Leifsonia xyli 0 species 240 6 1573 Clavibacter 1 11 0 genus 634 species 623 0 113 Clavibacter michiganensis 1 5 28447 Clavibacter sepedonicus 31964 1 subspecies 153 0 1 31963 Clavibacter nebraskensis 0 subspecies 118 124 subspecies 0 Clavibacter capsici 1874630 1 1 33014 Clavibacter insidiosus 0 115 subspecies 33882 14 1 Microbacterium 32 0 1499 genus Microbacterium hominis 162426 1 134 species 0 0 102 species 1 2033 Microbacterium testaceum 36805 1 Microbacterium aurum 0 species 111 species 113 0 Microbacterium paludicola 1 300019 84292 1 Microbacterium chocolatum 0 88 species no rank 919 0 8 2609290 0 species 101 2103230 1 Microbacterium sp. str. 'China' 1906742 1 Microbacterium sp. BH-3-3-3 0 139 species 0 species 72 1938334 1 Microbacterium sp. TPU 3598 1 1795053 Microbacterium sp. PAMC 28756 0 species 93 1696072 1 Microbacterium sp. CGR1 0 112 species Microbacterium sp. No. 7 1 1714373 species 182 0 1 367477 Microbacterium sp. XT11 0 species 106 species 114 0 Microbacterium sp. 1.5R 1916917 1 1 518733 0 127 genus species 127 0 Microterricola viridarii 412690 1 1705353 1 0 84 genus species 84 0 Aurantimicrobium minutum 1 708131 genus 109 0 1 337004 species 109 0 Microcella alkaliphila 279828 1 149 genus 0 1 33877 Agromyces aureus 1 453304 species 149 0 0 genus 209 33886 2 0 species 100 145458 1 Rathayibacter toxicus 109 species 0 Rathayibacter tritici 1 33888 1 1759331 genus 115 0 Cnuibacter physcomitrellae 1 1619308 species 115 0 371 genus 0 8 Curtobacterium 1 4 2034 257496 2 0 no rank 223 0 species 95 1 1905847 Curtobacterium sp. BH-2-1-1 Curtobacterium sp. MR_MD2014 1561023 1 128 species 0 0 species 140 69373 1 Curtobacterium pusillum 69578 3 1 Cryobacterium 4 0 genus 227 1 670052 Cryobacterium arcticum 0 111 species 0 112 no rank 2649013 1 112 species 0 Cryobacterium sp. LW097 1978566 1 447237 1 genus 386 0 0 386 no rank 1 2626248 0 species 386 1 1795630 Frondihabitans sp. PAMC 28766 0 84 genus 1434032 1 species 84 0 Pontimonas salivibrio 1 1159327 0 no rank 173 1655488 3 1655489 3 clade 173 0 173 genus 0 4 1 Rhodoluna 529883 3 0 91 species 529884 1 Rhodoluna lacicola 0 78 species 535712 1 Candidatus Rhodoluna planktonica 8 85021 Intrasporangiaceae 1 6 0 family 597 140 genus 2 0 Intrasporangium 1 2 53357 0 138 species 1 53358 Intrasporangium calvum genus 162 0 1 265976 1 1758689 Serinicoccus sp. JLT9 0 162 species 1 0 genus 136 267408 2 1 Arsenicicoccus 135 no rank 0 1 2663846 1658671 1 Arsenicicoccus sp. oral taxon 190 0 135 species 53457 2 1 Janibacter 6 0 153 genus Janibacter indicus 857417 1 species 147 0 1 Brevibacteriaceae 85019 2 family 206 3 0 0 genus 203 1696 1 0 species 203 1703 1 Brevibacterium linens Promicromonosporaceae 1 9 85017 821 family 2 0 Isoptericola 1 3 254250 genus 294 0 2 139 species 0 Isoptericola variabilis 139208 1 0 153 species 372663 1 Isoptericola dokdonensis genus 145 0 3 1 Xylanimonas 186188 2 186189 1 Xylanimonas cellulosilytica 0 species 142 3 157920 Cellulosimicrobium 1 4 0 380 genus 205 no rank 0 1 2624466 0 205 species 1980001 1 Cellulosimicrobium sp. TH-20 171 species 0 Cellulosimicrobium cellulans 1710 1 90 family 2 0 Dermatophilaceae 1 2 85018 1862 1 88 genus 0 Dermatophilus congolensis 1863 1 species 88 0 145360 2 164 family 0 1 0 genus 164 60919 2 1 Sanguibacter Sanguibacter keddieii 1 60920 species 163 0 32 85009 Propionibacteriales 1 14 0 2696 order family 1358 0 13 1 Nocardioidaceae 85015 13 182639 2 1 Kribbella 0 11 genus 208 1 182640 Kribbella flavida 0 species 197 0 1 251 genus 2044 2 1 Pimelobacter species 250 0 Pimelobacter simplex 2045 1 0 3 genus 179 2040 2 1 Aeromicrobium Aeromicrobium erythreum 1 2041 species 176 0 1 Micropruina 116071 2 133 genus 1 0 0 132 species 1 75385 Micropruina glycogenica 0 13 574 genus 4 1839 Nocardioides 1 0 232 species 450734 1 Nocardioides dokdonensis species 146 0 Nocardioides sp. 78 2045452 1 1 2615069 183 no rank 0 species 183 0 Nocardioides sp. JS614 1 196162 Propionibacteriaceae 1 18 31957 1324 family 19 0 1912216 4 1 Cutibacterium 0 7 genus 270 0 87 species 1 33010 Cutibacterium avidum 74 species 0 Cutibacterium granulosum 1 33011 1747 1 Cutibacterium acnes 0 102 species 0 genus 82 2801844 1 Pseudopropionibacterium propionicum 1750 1 82 species 0 0 genus 48 1 203133 no rank 48 0 2633994 1 1 1871034 Propionimicrobium sp. Marseille-P3275 0 species 48 Tessaracoccus 1 5 72763 470 genus 0 3 species 119 0 Tessaracoccus flavescens 1 399497 129 species 0 Tessaracoccus aquimaris 1332264 1 Tessaracoccus flavus 1 1610493 107 species 0 1 2635419 0 no rank 112 Tessaracoccus sp. T2.5-30 1 1909732 species 112 0 genus 119 0 29404 1 Microlunatus phosphovorus 29405 1 species 119 0 0 2 genus 146 2 1912215 Acidipropionibacterium 1 Acidipropionibacterium acidipropionici 1 1748 144 species 0 1 0 genus 170 1743 3 1 Propionibacterium 1 2608905 0 51 no rank species 51 0 Propionibacterium sp. oral taxon 193 1 671223 Propionibacterium freudenreichii 1744 1 118 species 0 0 5 1336 order 85013 7 1 Frankiales family 1331 8 0 1 Frankiaceae 74712 6 1854 5 1 Frankia 0 16 genus 1323 1859 1 Frankia alni 0 564 species 0 species 215 106370 1 Frankia casuarinae Frankia inefficax 298654 1 249 species 0 1 2632575 279 no rank 0 species 279 0 Frankia sp. EAN1pec 298653 1 Nakamurellales 1 4 1643684 145 order 0 1 2 0 144 family 85031 3 1 Nakamurellaceae genus 142 2 0 Nakamurella 1 2 53460 species 140 0 Nakamurella multipartita 53461 1 0 order 111 1643683 2 family 111 0 2 1 Acidothermaceae 85032 2 28048 1 genus 109 0 Acidothermus cellulolyticus 1 28049 109 species 0 18322 order 77 0 Corynebacteriales 1 161 85007 family 62 0 316606 1 1 286801 62 genus 0 Segniliparus rotundus 286802 1 62 species 0 3961 family 15 0 Corynebacteriaceae 1 52 1653 0 58 3946 genus 51 1716 Corynebacterium 1 0 90 species 1 1652495 Corynebacterium crudilactis 55 species 0 Corynebacterium stationis 1705 1 species 86 0 Corynebacterium terpenotabidum 1 89154 1 1697 Corynebacterium ammoniagenes 0 species 48 Corynebacterium mustelae 1 571915 species 54 0 1 160386 Corynebacterium casei 0 species 55 152794 1 Corynebacterium efficiens 0 64 species 0 99 species 1230998 1 Corynebacterium frankenforstense 71 species 0 Corynebacterium marinum 1 349751 401472 1 Corynebacterium ureicelerivorans 0 species 47 species 123 0 Corynebacterium diphtheriae 1 1717 1408191 1 Corynebacterium deserti 0 67 species 0 57 species 146827 1 Corynebacterium simulans Corynebacterium phocae 1 161895 species 47 0 1231000 1 Corynebacterium lactis 0 60 species Corynebacterium kutscheri 35755 1 81 species 0 0 79 species 1 225326 Corynebacterium halotolerans 0 species 62 1 1721 Corynebacterium callunae species 69 0 Corynebacterium maris 575200 1 Corynebacterium argentoratense 1 42817 species 68 0 0 56 species 65058 1 Corynebacterium ulcerans Corynebacterium epidermidicanis 1050174 1 species 35 0 species 191 0 Corynebacterium glutamicum 1718 1 0 98 species 1 1404244 Corynebacterium glyciniphilum 1 161896 Corynebacterium camporealensis 0 59 species 101 species 0 Corynebacterium striatum 1 43770 191493 1 Corynebacterium sphenisci 0 99 species 0 species 51 1 28028 Corynebacterium flavescens 0 species 118 1223514 1 Corynebacterium humireducens Corynebacterium imitans 1 156978 44 species 0 species 108 0 Corynebacterium variabile 1727 1 Corynebacterium aurimucosum 169292 1 species 51 0 0 species 74 1 35757 Corynebacterium cystitidis 92706 1 [Brevibacterium] flavum 0 species 70 0 58 species 1 203263 Corynebacterium aquilae Corynebacterium singulare 161899 1 54 species 0 2624378 2 no rank 99 0 Corynebacterium sp. ATCC 6931 1 1487956 species 49 0 0 50 species 1 702967 Corynebacterium sp. NML98-0116 191610 1 Corynebacterium atypicum 0 50 species 1 1072256 Corynebacterium uterequi 0 species 357 0 species 74 1 1719 Corynebacterium pseudotuberculosis 62 species 0 Corynebacterium glaucum 187491 1 161879 1 Corynebacterium kroppenstedtii 0 species 34 Corynebacterium vitaeruminis 1 38305 species 116 0 Corynebacterium resistens 1 258224 species 60 0 0 species 58 136857 1 Corynebacterium testudinoris 1 108486 Corynebacterium falsenii 0 species 59 Corynebacterium urealyticum 1 43771 93 species 0 38289 1 Corynebacterium jeikeium 0 species 103 1121358 1 Corynebacterium doosanense 0 74 species 1 Gordoniaceae 85026 9 family 891 0 4 1 Gordonia 2053 8 genus 887 20 0 2054 1 Gordonia bronchialis 0 162 species Gordonia iterans 1004901 1 132 species 0 Gordonia phthalatica 1136941 1 species 102 0 112 species 0 Gordonia terrae 2055 1 Gordonia polyisoprenivorans 1 84595 species 114 0 245 no rank 0 2 2657482 0 141 species 337191 1 Gordonia sp. KTR9 Gordonia sp. YC-JH1 1 2059875 104 species 0 56 no rank 0 697024 2 Lawsonella 1 2 1847725 genus 56 0 1 Lawsonella clevelandensis 1528099 1 species 55 0 7632 family 16 0 1 Mycobacteriaceae 1762 57 genus 86 3 0 1 Hoyosella 697025 2 Hoyosella subflava 1 639313 species 83 0 670516 5 genus 907 0 1 83262 Mycobacterium immunogenum 0 species 123 0 73 species 1 1520670 Mycobacterium stephanolepidis 0 species 91 1 1774 Mycobacterium chelonae 548 species 0 Mycobacterium abscessus 36809 1 species 72 0 Mycobacterium saopaulense 1578165 1 2016 genus 0 1866885 13 species 202 0 Mycobacterium phlei 1771 1 0 species 95 1766 1 Mycobacterium fortuitum 134 species 0 Mycobacterium litorale 1 758802 134601 1 Mycobacterium goodii 0 171 species species 188 0 Mycobacterium smegmatis 1 1772 1800 1 Mycobacterium chubuense 0 171 species 1804 1 Mycobacterium gilvum 0 species 202 1 1795 Mycobacterium neoaurum 0 130 species Mycobacterium vaccae 1810 1 167 species 0 0 species 130 36814 1 Mycobacterium rhodesiae Mycobacterium aurum 1791 1 182 species 0 110539 1 Mycobacterium vanbaalenii 0 119 species Mycobacterium thermoresistibile 1797 1 125 species 0 2 1073531 0 genus 253 Mycobacterium terrae 1788 1 species 124 0 875328 1 Mycobacterium sinense 0 species 129 1 Mycobacterium 1763 34 genus 4354 0 246 0 species 183 1 482462 Mycobacterium dioxanotrophicus 1062 species group 0 120793 8 Mycobacterium colombiense 1 339268 125 species 0 Mycobacterium paraintracellulare 1138383 1 species 36 0 Mycobacterium marseillense 701042 1 91 species 0 276 species 70 0 1 Mycobacterium intracellulare 1767 4 0 123 subspecies 222805 1 Mycobacterium chimaera 0 51 subspecies 1203599 1 Mycobacterium yongonense 0 subspecies 32 1 35617 Mycobacterium indicus pranii 1 1764 Mycobacterium avium 0 534 species Mycobacterium liflandii 261524 1 species 120 0 2642494 13 0 no rank 1751 species 155 0 Mycobacterium sp. JLS 164757 1 155 species 0 Mycobacterium sp. MCS 164756 1 97 species 0 Mycobacterium sp. VKM Ac-1817D 1273687 1 0 species 152 1920667 1 Mycobacterium sp. WY10 0 species 71 1561223 1 Mycobacterium sp. QIA-37 2051552 1 Mycobacterium sp. PYR15 0 species 140 130 species 0 Mycobacterium sp. NRRL B-3805 1 1570328 1 189918 Mycobacterium sp. KMS 0 166 species 0 140 species 1 1682113 Mycobacterium sp. YC-RL4 1 1168287 Mycobacterium sp. MOTT36Y 0 43 species 137 species 0 Mycobacterium sp. EPa45 1545728 1 species 186 0 Mycobacterium sp. JS623 212767 1 Mycobacterium sp. djl-10 1 1879023 179 species 0 Mycobacterium ulcerans 1 1809 124 species 0 2249310 1 0 species group 117 Mycobacterium shigaense 1 722731 species 117 0 0 344 species group 77643 4 99 0 279 species 1773 3 1 Mycobacterium tuberculosis 33894 1 Mycobacterium africanum 0 88 biotype 1765 1 Mycobacterium bovis 0 92 biotype Mycobacterium canettii 78331 1 65 species 0 32 species 0 Mycobacterium leprae 1 1769 Mycobacterium haemophilum 29311 1 58 species 0 1781 1 Mycobacterium marinum 0 species 193 124 species 0 Mycobacterium kansasii 1768 1 4 85028 Tsukamurellaceae 1 0 1 family 402 genus 401 4 0 Tsukamurella 1 3 2060 0 species 239 57704 1 Tsukamurella tyrosinosolvens Tsukamurella paurometabola 2061 1 158 species 0 31 85025 Nocardiaceae 1 0 32 4983 family 3430 genus 0 100 Rhodococcus 1 23 1827 43767 1 Rhodococcus hoagii 0 152 species 0 species 85 334542 1 Rhodococcus qingshengii 1833 1 Rhodococcus erythropolis 0 species 165 226 species 0 Rhodococcus jostii 132919 1 Rhodococcus fascians 1 1828 104 species 0 0 174 species 191292 1 Rhodococcus aetherivorans 143 species 0 Rhodococcus rhodochrous 1 1829 no rank 1305 0 12 192944 Rhodococcus sp. MTM3W5.2 1805827 1 162 species 0 0 61 species 1045808 1 Rhodococcus sp. YL-1 0 species 146 935199 1 Rhodococcus sp. p52 Rhodococcus sp. 2G 1570939 1 130 species 0 species 60 0 Rhodococcus sp. WMMA185 1 679318 1723645 1 Rhodococcus sp. 008 0 species 75 1 1807790 Rhodococcus sp. BH4 0 species 68 0 species 93 1 1653479 Rhodococcus sp. PBTS 2 1 1653478 Rhodococcus sp. PBTS 1 0 species 136 Rhodococcus sp. WB1 1 1033922 199 species 0 Rhodococcus sp. H-CA8f 1 1727214 species 71 0 species 104 0 Rhodococcus sp. B7740 1564114 1 0 183 species 1 103816 Rhodococcus pyridinivorans Rhodococcus ruber 1 1830 190 species 0 37919 1 Rhodococcus opacus 0 species 603 genus 1521 0 26 1 Nocardia 1817 7 0 species 195 37329 1 Nocardia farcinica Nocardia terpenica 455432 1 201 species 0 1 37332 Nocardia seriolae 0 153 species 304 species 0 Nocardia cyriacigeorgica 135487 1 Nocardia nova 37330 1 species 192 0 1 37326 Nocardia brasiliensis 0 450 species 1 Dietziaceae 85029 4 258 family 0 4 3 37914 Dietzia 1 0 1 254 genus 0 144 no rank 2617939 1 712270 1 Dietzia sp. oral taxon 368 0 144 species 109 species 0 Dietzia timorensis 499555 1 1 Candidatus Nanopelagicales 2039638 12 order 2477 0 6 family 2471 0 2162846 11 Candidatus Nanopelagicus 1 4 2039639 1253 genus 12 0 1 1884634 Candidatus Nanopelagicus limnes 0 424 species 1884915 1 Candidatus Nanopelagicus hibericus 0 335 species Candidatus Nanopelagicus abundans 1 1884916 species 482 0 622681 7 1 Candidatus Planktophila 0 8 1218 genus 0 205 species 1884907 1 Candidatus Planktophila vernalis Candidatus Planktophila sulfonica 1884904 1 species 113 0 Candidatus Planktophila lacus 1884913 1 species 198 0 Candidatus Planktophila dulcis 1 1884914 species 237 0 256 species 0 Candidatus Planktophila limnetica 573600 1 0 201 species 1 1884905 Candidatus Planktophila versatilis order 1728 0 14 1 Bifidobacteriales 85004 26 family 1714 6 0 Bifidobacteriaceae 1 25 31953 genus 1289 0 19 1 Bifidobacterium 1678 19 Bifidobacterium coryneforme 1687 1 species 43 0 92 species 0 Bifidobacterium pseudolongum 1694 1 0 102 species 1 638619 Bifidobacterium actinocoloniiforme 1 1684 Bifidobacterium asteroides 0 species 55 0 species 97 1 35760 Bifidobacterium choerinum 83 species 0 Bifidobacterium animalis 28025 1 0 species 43 33905 1 Bifidobacterium thermophilum Bifidobacterium bifidum 1681 1 87 species 0 1691 1 Bifidobacterium indicum 0 37 species 28026 1 Bifidobacterium pseudocatenulatum 0 species 55 0 47 species 1 1683 Bifidobacterium angulatum 1 Bifidobacterium catenulatum 1686 2 84 species 28 0 subspecies 56 0 Bifidobacterium kashiwanohense 630129 1 0 69 species 158787 1 Bifidobacterium scardovii 1 216816 Bifidobacterium longum 0 167 species 1689 1 Bifidobacterium dentium 0 51 species species 37 0 Bifidobacterium adolescentis 1680 1 Bifidobacterium breve 1 1685 species 121 0 Gardnerella 1 2 2701 genus 303 2 0 0 species 301 1 2702 Gardnerella vaginalis 1 196082 genus 38 0 0 38 species 1 78258 Parascardovia denticolens genus 78 0 3 1 Scardovia 196081 2 0 species 75 78259 1 Scardovia inopinata 1058 order 5 0 Actinomycetales 1 18 2037 Actinomycetaceae 1 17 2049 family 1053 0 14 0 genus 61 1 2050 61 species 0 Mobiluncus curtisii 2051 1 0 59 genus 2529408 1 52773 1 Actinomyces meyeri 0 59 species 1654 9 1 Actinomyces 0 21 704 genus 0 50 species 1912795 1 Actinomyces sp. VUL4_3 Actinomyces gaoshouyii 1960083 1 59 species 0 91 species 0 Actinomyces oris 1 544580 0 64 species 1852377 1 Actinomyces pacaensis 174 species 0 Actinomyces radicidentis 111015 1 0 no rank 245 3 2609248 species 81 0 Actinomyces sp. Chiba101 1 1851395 2081702 1 Actinomyces sp. oral taxon 897 0 species 63 712122 1 Actinomyces sp. oral taxon 414 0 101 species genus 81 0 1 28263 species 81 0 Arcanobacterium haemolyticum 1 28264 2 1653174 Actinotignum 1 0 1 53 genus 0 species 52 59505 1 Actinotignum schaalii genus 81 1 0 1 Trueperella 1069494 2 0 species 80 1661 1 Trueperella pyogenes 6 84995 Rubrobacteria 1 1 0 class 226 5 84996 Rubrobacterales 1 3 0 225 order family 222 0 1 1 Rubrobacteraceae 84997 4 6 0 221 genus 3 42255 Rubrobacter 1 0 119 species 1 49319 Rubrobacter xylanophilus 1 42256 Rubrobacter radiotolerans 0 species 96 58 0 phylum 192949 682 1239 Firmicutes 1 1 84086 0 no rank 507 1 243899 endosymbiont 'TC1' of Trimyema compressum 0 507 species Tissierellia 1 17 1737404 class 3006 0 7 1737405 14 1 Tissierellales 0 16 order 2693 0 751 family 2042895 2 1505664 2 1 Gottschalkia 0 8 751 genus Gottschalkia acidurici 1 1556 species 743 0 1570339 11 1 Peptoniphilaceae 6 0 family 1926 1 Finegoldia 150022 2 421 genus 0 1 1 1260 Finegoldia magna 0 420 species 0 genus 70 1 1161127 Murdochiella vaginalis 1 1852373 70 species 0 162289 2 1 Peptoniphilus 0 5 genus 254 0 249 no rank 2637196 1 249 species 0 Peptoniphilus sp. ING2-D1G 1 1912856 616 genus 0 2 Parvimonas 1 2 543311 33033 1 Parvimonas micra 0 614 species genus 559 0 2 1 Anaerococcus 165779 3 257 species 0 Anaerococcus mediterraneensis 1870984 1 33034 1 Anaerococcus prevotii 0 300 species 0 306 no rank 1737407 2 Ezakiella 1 2 1582879 306 genus 0 1 305 species 0 Ezakiella massiliensis 1852374 1 54 no rank 0 1 33974 genus 54 0 1 1930845 Ndongobacter massiliensis 1871025 1 54 species 0 76 0 72019 class 197 186801 Clostridia 1 order 3045 8 0 Halanaerobiales 1 11 53433 6 0 family 999 53434 4 1 Halobacteroidaceae 630 genus 4 0 1 Halobacteroides 42417 2 42422 1 Halobacteroides halobius 0 626 species 1 28186 genus 363 0 species 363 0 Acetohalobium arabaticum 28187 1 6 972 Halanaerobiaceae 1 3 0 2038 family 32636 2 1 Halothermothrix 7 0 genus 286 Halothermothrix orenii 1 31909 species 279 0 1 Halanaerobium 2330 3 genus 1749 6 0 species 773 0 Halanaerobium hydrogeniformans 656519 1 0 species 970 1 2331 Halanaerobium praevalens 0 10 8832 order 35 68295 Thermoanaerobacterales 1 1 Thermodesulfobiaceae 227387 3 464 family 1 0 genus 463 1 0 Thermodesulfobium 1 2 227388 0 462 species 1 184064 Thermodesulfobium narugense 543372 2 1 Thermoanaerobacterales Family IV. Incertae Sedis 1 0 family 103 102 genus 0 1 252965 Mahella australiensis 252966 1 102 species 0 4032 family 0 6 Thermoanaerobacterales Family III. Incertae Sedis 1 13 543371 0 52 2931 genus 44000 9 1 Caldicellulosiruptor 375 species 0 Caldicellulosiruptor bescii 31899 1 0 407 species 44001 1 Caldicellulosiruptor saccharolyticus Caldicellulosiruptor obsidiansis 1 717609 species 369 0 species 417 0 Caldicellulosiruptor kronotskyensis 413889 1 315 species 0 Caldicellulosiruptor lactoaceticus 1 52766 0 species 323 55205 1 Caldicellulosiruptor owensensis 0 319 species 1 52765 Caldicellulosiruptor kristjanssonii 0 354 species 413888 1 Caldicellulosiruptor hydrothermalis Thermoanaerobacterium 1 3 28895 1095 genus 0 2 0 360 species 29329 1 Thermoanaerobacterium xylanolyticum 0 species 733 1517 1 Thermoanaerobacterium thermosaccharolyticum family 4223 6 0 1 Thermoanaerobacteraceae 186814 16 Thermoanaerobacter 1 9 1754 3464 genus 153 0 Thermoanaerobacter italicus 1 108150 411 species 0 Thermoanaerobacter pseudethanolicus 496866 1 429 species 0 species 386 0 Thermoanaerobacter kivui 1 2325 0 429 species 29323 1 Thermoanaerobacter brockii 0 834 no rank 2636821 2 0 species 397 399726 1 Thermoanaerobacter sp. X514 Thermoanaerobacter sp. X513 1 573062 437 species 0 0 species 433 1 46354 Thermoanaerobacter wiegelii 1 583357 Thermoanaerobacter mathranii 0 389 species 1 249529 0 334 genus 0 334 species 1 911092 Caldanaerobacter subterraneus 1 129957 0 179 genus Carboxydothermus hydrogenoformans 1 129958 species 179 0 1 140458 0 90 genus 90 species 0 Thermacetogenium phaeum 85874 1 42857 3 no rank 150 0 1 42837 0 genus 47 Ammonifex degensii 1 42838 47 species 0 3 0 103 genus 2 44260 Moorella 1 100 species 0 Moorella thermoacetica 1525 1 0 126 order 59320 143 186802 Clostridiales 1 11 2304686 2114 family 0 0 no rank 57 2305130 1 1 1834198 Ruminiclostridium sp. KB18 0 species 57 1 2304691 0 134 genus species 134 0 [Clostridium] stercorarium 1 1510 0 genus 96 1637257 1 0 species 96 1 884684 Mageeibacillus indolicus 2304692 3 genus 1029 0 Herbivorax saccincola 1 1677857 species 403 0 [Clostridium] clariflavum 1 288965 species 387 0 0 species 239 1 1515 Ruminiclostridium thermocellum genus 199 0 1 2304693 84032 1 [Clostridium] thermosuccinogenes 0 species 199 0 7 genus 325 2 1508657 Ruminiclostridium 1 species 318 0 [Clostridium] cellulolyticum 1521 1 Fastidiosipila 1 2 236752 274 genus 3 0 236753 1 Fastidiosipila sanguinis 0 species 271 0 14 3544 family 27 186807 Peptococcaceae 1 genus 761 4 0 Desulfitobacterium 1 5 36853 Desulfitobacterium metallireducens 142877 1 203 species 0 179 species 0 Desulfitobacterium dichloroeliminans 1 233055 Desulfitobacterium hafniense 1 49338 210 species 0 1 36854 Desulfitobacterium dehalogenans 0 species 165 1 278993 0 135 genus Thermincola potens 1 863643 species 135 0 1 51514 0 genus 272 species 272 0 Dehalobacterium formicoaceticum 1 51515 2282742 1 220 genus 0 0 220 species 1 58138 Desulfotomaculum acetoxidans 0 4 genus 322 56112 4 1 Dehalobacter 2 2635733 224 no rank 0 1 1131462 Dehalobacter sp. CF 0 species 119 Dehalobacter sp. DCA 1 1147129 species 105 0 1 55583 Dehalobacter restrictus 0 94 species 67 genus 2 0 1 Candidatus Desulforudis 471826 2 0 species 65 1 471827 Candidatus Desulforudis audaxviator 760 genus 4 0 1 Desulfosporosinus 79206 4 1 79209 Desulfosporosinus meridiei 0 species 247 species 259 0 Desulfosporosinus acidiphilus 1 885581 species 250 0 Desulfosporosinus orientis 1 1563 123 genus 2 0 1 Syntrophobotulus 51196 2 1 51197 Syntrophobotulus glycolicus 0 121 species 3 0 genus 660 1562 5 1 Desulfotomaculum 0 236 species 1 59610 Desulfotomaculum reducens 0 species 155 1564 1 Desulfotomaculum ruminis 141 species 0 Desulfotomaculum ferrireducens 1833852 1 Desulfotomaculum nigrificans 1 1565 species 125 0 2282740 1 210 genus 0 Desulfotomaculum gibsoniae 102134 1 species 210 0 1 990719 69 family 0 genus 69 0 990721 1 0 69 species 1 1805714 Christensenella massiliensis 3 31984 Heliobacteriaceae 1 1 0 84 family 2697 2 1 Heliobacterium 0 2 genus 83 Heliobacterium modesticaldum 1 35701 81 species 0 78 family 0 216572 2 Oscillibacter 1 2 459786 78 genus 0 1 species 77 0 Oscillibacter valericigenes 351091 1 9 186804 Peptostreptococcaceae 1 11 0 4331 family 1 1411023 no rank 319 0 0 species 319 2081703 1 Peptostreptococcaceae bacterium oral taxon 929 genus 140 0 1 1481960 0 140 species 1731 1 Peptoclostridium acidaminophilum 218 genus 0 44259 1 species 218 0 Filifactor alocis 143361 1 Clostridioides 1 2 1870884 genus 2123 0 1 Clostridioides difficile 1 1496 2122 species 0 1 1849828 1003 genus 0 0 species 1003 1 1505 Paeniclostridium sordellii 186831 2 1 Acetoanaerobium 0 3 genus 517 514 species 0 Acetoanaerobium sticklandii 1 1511 2 543349 143 family 0 1 Symbiobacterium 2733 2 genus 143 2 0 0 141 species 2734 1 Symbiobacterium thermophilum 721 family 0 8 Ruminococcaceae 1 11 541000 102 genus 1 0 Flavonifractor 1 2 946234 101 species 0 Flavonifractor plautii 1 292800 0 genus 1 1890281 1 Herbivorax 3 1263 Ruminococcus 1 0 1 genus 284 138 species 0 Ruminococcus albus 1264 1 Ruminococcus bicirculans 1 1160721 species 145 0 83 genus 0 1 216851 0 species 83 1 853 Faecalibacterium prausnitzii no rank 98 0 552397 1 1 29343 [Clostridium] cellulosi 0 species 98 1 253238 genus 88 0 0 species 88 253239 1 Ethanoligenens harbinense 0 57 no rank 1 2305133 1 1572656 Ruminococcaceae bacterium CPB6 0 species 57 1 Clostridiaceae 31979 39 family 41807 23 0 0 genus 1 1 1981033 Mordavella 229 0 38745 genus 1485 30 1 Clostridium 0 species 1094 1534 1 Clostridium kluyveri species 926 0 Clostridium sporogenes 1509 1 1 36745 Clostridium saccharoperbutylacetonicum 0 1669 species 0 1548 species 169679 1 Clostridium saccharobutylicum Clostridium scatologenes 1548 1 1284 species 0 1 46867 Clostridium chauvoei 0 species 904 1 1488 Clostridium acetobutylicum 0 species 967 0 1089 species 1 1216932 Clostridium bornimense Clostridium novyi 1542 1 826 species 0 743 species 0 Clostridium autoethanogenum 84023 1 0 species 1899 1502 1 Clostridium perfringens Clostridium botulinum 1491 1 8138 species 0 Clostridium cellulovorans 1493 1 species 894 0 1082 species 0 Clostridium argentinense 1 29341 394958 1 Clostridium taeniosporum 0 species 1005 0 1262 species 217159 1 Clostridium carboxidivorans 0 1774 species 1561 1 Clostridium baratii 1 1519 Clostridium tyrobutyricum 0 species 679 Clostridium pasteurianum 1 1501 species 1955 0 1130 species 0 Clostridium tetani 1513 1 species 740 0 Clostridium cochlearium 1494 1 0 species 772 1538 1 Clostridium ljungdahlii 895 species 0 Clostridium estertheticum 238834 1 1454 species 0 Clostridium butyricum 1 1492 2 2614128 no rank 405 0 Clostridium sp. BNL1100 755731 1 350 species 0 species 55 0 Clostridium sp. SY8519 1 1042156 1497 1 Clostridium formicaceticum 0 534 species 1520 1 Clostridium beijerinckii 0 species 2264 species 584 0 Clostridium aceticum 1 84022 114627 2 904 genus 0 species 582 0 Alkaliphilus metalliredigens 208226 1 461876 1 Alkaliphilus oremlandii 0 species 322 4 49082 Candidatus Arthromitus 1 24 0 genus 1736 0 no rank 1712 3 2638829 Candidatus Arthromitus sp. SFB-mouse-NL 1 1508644 species 561 0 0 587 species 1 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 0 species 564 1 49118 Candidatus Arthromitus sp. SFB-mouse 390805 1 0 genus 398 0 398 species 1 1424294 Geosporobacter ferrireducens 22 186803 Lachnospiraceae 1 11 0 4898 family 1663717 1 genus 306 0 species 306 0 Herbinix luporum 1 1679721 0 378 genus 572511 2 2648079 1 0 126 no rank Blautia sp. YL58 1 1796616 species 126 0 0 252 species 1 1322 Blautia hansenii 2569097 1 499 genus 0 0 499 species 1 39488 [Eubacterium] hallii no rank 291 0 186928 2 39491 1 [Eubacterium] rectale 0 species 187 Lachnospiraceae bacterium oral taxon 500 712991 1 species 104 0 1 207244 280 genus 0 0 280 species 1 649756 Anaerostipes hadrus 2039240 1 210 genus 0 0 210 species 1 28446 Anaerotignum propionicum 3 830 Butyrivibrio 1 1 0 genus 641 308 species 0 Butyrivibrio hungatei 1 185008 species 332 0 Butyrivibrio proteoclasticus 1 43305 0 genus 106 841 1 species 106 0 Roseburia hominis 301301 1 882 genus 1 0 1 Cellulosilyticum 698776 2 1 29360 Cellulosilyticum lentocellum 0 species 881 325 genus 0 28050 1 0 species 325 1 39485 [Eubacterium] eligens 694 genus 0 6 Lachnoclostridium 1 4 1506553 0 no rank 120 2608895 1 Lachnoclostridium sp. YL32 1 1834196 120 species 0 Lachnoclostridium phocaeense 1 1871021 species 84 0 1 66219 Lachnoclostridium phytofermentans 0 484 species 1 2719231 genus 142 0 1 84030 [Clostridium] saccharolyticum 0 species 142 genus 133 0 2719313 1 208479 1 [Clostridium] bolteae 0 species 133 578 no rank 0 538999 8 Clostridiales Family XIII. Incertae Sedis 1 4 543314 313 family 2 0 [Eubacterium] sulci 1 143393 species 158 0 2 86331 Mogibacterium 1 0 2 153 genus Mogibacterium diversum 1 114527 species 151 0 0 85 genus 1392389 1 1297617 1 Intestinimonas butyriciproducens 0 species 85 2717089 1 genus 88 0 species 88 0 Mordavella sp. Marseille-P3756 2086584 1 0 1 family 92 2 539000 Clostridiales Family XVII. Incertae Sedis 1 91 genus 0 1 73918 species 91 0 Thermaerobacter marianensis 1 73919 6 0 family 196 3 68298 Syntrophomonadaceae 1 54 genus 0 129001 1 0 species 54 1 86170 Syntrophothermus lipocalidus 0 genus 136 862 1 136 species 0 Syntrophomonas wolfei 1 863 186806 4 1 Eubacteriaceae 4 0 631 family 1 33951 0 genus 265 Acetobacterium woodii 1 33952 species 265 0 1 Eubacterium 1730 2 genus 362 4 0 0 358 species 1 1736 Eubacterium limosum 1 Natranaerobiales 485256 4 404 order 2 0 1 0 family 402 3 485255 Natranaerobiaceae 1 Natranaerobius 1 2 375928 genus 401 0 1 375929 1 Natranaerobius thermophilus 0 400 species 3 2770089 342 order 0 family 255 0 2770092 2 1 0 255 genus 2 499228 Tepidanaerobacter 1 0 species 254 499229 1 Tepidanaerobacter acetatoxydans 1 2770093 family 87 0 0 genus 87 291988 1 0 87 species 1 291990 Thermosediminibacter oceani class 113446 0 95 Bacilli 1 424 91061 1 Bacillales 1385 260 order 78417 0 158 family 57 0 2 1 Thermoactinomycetaceae 186824 2 1677050 1 genus 55 0 55 species 0 Novibacillus thermophilus 1 1471761 1 Listeriaceae 186820 9 2732 family 0 3 1 Brochothrix 2755 2 361 genus 0 2 0 species 359 1 2756 Brochothrix thermosphacta 1 Listeria 1637 6 2368 genus 0 27 Listeria ivanovii 1 1638 species 510 0 1643 1 Listeria welshimeri 0 363 species Listeria monocytogenes 1639 1 867 species 0 1 1642 Listeria innocua 0 species 325 species 276 0 Listeria seeligeri 1 1640 family 42368 0 62 Bacillaceae 1 116 186817 150247 6 1 Anoxybacillus 22 0 genus 1427 33934 1 Anoxybacillus flavithermus 0 419 species 0 239 species 198467 1 Anoxybacillus gonensis Anoxybacillus amylolyticus 294699 1 species 272 0 0 475 no rank 2 2639704 245 species 0 Anoxybacillus sp. B7M1 1 1490057 Anoxybacillus sp. B2M1 1 1490052 230 species 0 Lysinibacillus 1 5 400634 genus 2542 0 16 1145276 1 Lysinibacillus varians 0 species 410 1 2636778 0 no rank 459 2072025 1 Lysinibacillus sp. YS11 0 459 species 0 species 1242 1 1421 Lysinibacillus sphaericus 1 28031 Lysinibacillus fusiformis 0 species 415 Fictibacillus 1 3 1329200 552 genus 1 0 species 267 0 Fictibacillus arsenicus 1 255247 1 1221500 Fictibacillus phosphorivorans 0 284 species 2 459532 Terribacillus 1 1 0 genus 171 170 species 0 Terribacillus aidingensis 1 586416 1 Bacillus 1386 58 genus 27296 474 0 0 species 242 1664069 1 Bacillus glycinifermentans species 487 0 Bacillus flexus 1 86664 79881 1 Bacillus gibsonii 0 species 86 Bacillus weihaiensis 1 1547283 species 493 0 0 227 species 1 79883 Bacillus horikoshii 0 12746 species group 86661 10 1396 1 Bacillus cereus 0 4310 species 0 402 species 658666 1 Bacillus bombysepticus species 363 0 Bacillus toyonensis 1 155322 3 2750818 1099 no rank 0 0 329 species 1 1892404 Bacillus sp. ABP14 449 species 0 Bacillus sp. FDAARGOS_235 1 1839798 Bacillus sp. HBCD-sjtu 2053832 1 321 species 0 Bacillus mycoides 1405 1 species 1542 0 0 389 species 580165 1 Bacillus cytotoxicus 4169 species 0 Bacillus thuringiensis 1428 1 0 species 472 1392 1 Bacillus anthracis 561879 1 Bacillus safensis 0 species 519 244 species group 0 1 1792192 Bacillus altitudinis 293387 1 species 244 0 Bacillus methanolicus 1 1471 355 species 0 Bacillus pumilus 1408 1 species 1015 0 653685 9 species group 2827 0 Bacillus licheniformis 1 1402 species 217 0 30 species 0 Bacillus vallismortis 1 72361 0 species subgroup 861 3 1938374 659243 1 Bacillus siamensis 0 species 53 species 440 0 Bacillus velezensis 1 492670 1 1390 Bacillus amyloliquefaciens 0 species 368 1423 1 Bacillus subtilis 0 1100 species Bacillus sonorensis 1 119858 species 178 0 1 1648923 Bacillus paralicheniformis 0 species 150 Bacillus atrophaeus 1 1452 291 species 0 no rank 2557 0 185979 19 species 125 0 Bacillus sp. FJAT-14266 1 1837130 1570330 1 Bacillus sp. BH072 0 23 species Bacillus sp. OxB-1 98228 1 111 species 0 0 42 species 1 1628753 Bacillus sp. LM 4-2 1 2049935 Bacillus sp. Lzh-5 0 28 species 1 1574141 Bacillus sp. YP1 0 52 species 0 509 species 666686 1 Bacillus sp. 1NLA3E Bacillus sp. SJ-10 1 563169 species 61 0 1 1127744 Bacillus sp. JS 0 70 species 77 species 0 Bacillus sp. MD-5 2009331 1 1565991 1 Bacillus sp. X1(2014) 0 species 386 1 1827146 Bacillus sp. IHB B 7164 0 404 species 0 239 species 756828 1 Bacillus sp. WP8 0 106 species 1856406 1 Bacillus sp. H15-1 Bacillus sp. (in: Bacteria) 1409 1 species 30 0 species 62 0 Bacillus sp. SDLI1 1 1774743 species 63 0 Bacillus sp. Pc3 1446792 1 Bacillus sp. 275 1941347 1 63 species 0 Bacillus sp. 1s-1 2026248 1 106 species 0 species 187 0 Bacillus smithii 1 1479 0 198 species 1 1178537 Bacillus xiamenensis species 1978 0 Bacillus megaterium 1 1404 0 643 species 135735 1 Bacillus endophyticus Bacillus cellulosilyticus 1413 1 464 species 0 632773 1 Bacillus beveridgei 0 116 species 1398 1 Bacillus coagulans 0 278 species species 431 0 Bacillus aryabhattai 412384 1 species 591 0 Bacillus cohnii 1 33932 324767 1 Bacillus infantis 0 species 138 Geobacillus 1 15 129337 genus 1771 0 87 519 species group 0 1505648 4 0 species 250 33941 1 Geobacillus thermoleovorans 80 species 0 Geobacillus lituanicus 1 169283 Geobacillus thermocatenulatus 33938 1 93 species 0 0 96 species 1462 1 Geobacillus kaustophilus 707 no rank 0 2642459 6 0 42 species 550542 1 Geobacillus sp. Y412MC52 0 189 species 1 581103 Geobacillus sp. Y4.1MC1 1 691437 Geobacillus sp. C56-T3 0 species 128 471223 1 Geobacillus sp. WCH70 0 268 species 544556 1 Geobacillus sp. Y412MC61 0 species 36 0 species 44 1233873 1 Geobacillus sp. GHH01 Geobacillus genomosp. 3 1 1921421 species 68 0 0 138 species 1 1422 Geobacillus stearothermophilus 0 species 159 1 33940 Geobacillus thermodenitrificans 1 129338 Geobacillus subterraneus 0 species 93 0 genus 279 1906945 1 Parageobacillus thermoglucosidasius 1 1426 species 279 0 182709 1 genus 891 0 Oceanobacillus iheyensis 1 182710 891 species 0 0 genus 416 1 29331 0 416 species 1449 1 Amphibacillus xylanus 2675229 2 0 847 genus 0 species 647 1478 1 Bacillus simplex Bacillus muralis 264697 1 200 species 0 351195 2 1 Salimicrobium 0 1 117 genus 1 1230341 Salimicrobium jeotgali 0 species 116 genus 198 0 1 175304 1472767 1 Lentibacillus amyloliquefaciens 0 198 species 2675230 2 0 genus 864 317 species 0 Bacillus oceanisediminis 665099 1 0 547 species 859143 1 Bacillus kochii genus 1777 0 5 2675234 0 385 species 1 300825 Bacillus lehensis 0 species 392 79885 1 Bacillus pseudofirmus 1 79880 Bacillus clausii 0 301 species 0 species 510 1 199441 Bacillus krulwichiae 1 86665 Bacillus halodurans 0 189 species Virgibacillus 1 7 84406 genus 2420 12 0 Virgibacillus halodenitrificans 1482 1 species 354 0 1 2017483 Virgibacillus phasianinus 0 390 species species 454 0 Virgibacillus pantothenticus 1473 1 species 413 0 Virgibacillus necropolis 163877 1 797 no rank 0 2 2620237 0 426 species 1 1911587 Virgibacillus sp. 6R 0 species 371 403957 1 Virgibacillus sp. SK37 45667 3 1 Halobacillus 0 2 410 genus species 201 0 Halobacillus mangrovi 402384 1 species 207 0 Halobacillus halophilus 1 1570 genus 328 0 1 1055323 0 species 328 33936 1 Aeribacillus pallidus 1 Planococcaceae 186818 27 5372 family 0 8 0 1 245 genus 2 157226 Jeotgalibacillus 1 1 1508404 Jeotgalibacillus malaysiensis 0 244 species genus 328 6 0 Kurthia 1 2 1649 2644826 1 no rank 322 0 Kurthia sp. 11kri321 1 1750719 species 322 0 genus 2505 19 0 Planococcus 1 12 1372 0 392 no rank 2662419 2 Planococcus sp. MB-3u-03 1 2058136 species 121 0 1526927 1 Planococcus sp. PAMC 21323 0 271 species 200991 1 Planococcus rifietoensis 0 103 species 109 species 0 Planococcus plakortidis 1038856 1 0 231 species 192421 1 Planococcus maritimus Planococcus antarcticus 1 161360 species 207 0 species 247 0 Planococcus donghaensis 1 414778 1598147 1 Planococcus faecalis 0 species 272 1302659 1 Planococcus sp. L10.15 0 species 324 Planococcus kocurii 1 1374 273 species 0 Planococcus halocryophilus 1 1215089 species 328 0 1 Sporosarcina 1569 5 genus 1212 0 7 species 310 0 Sporosarcina psychrophila 1476 1 2 2647733 0 252 no rank 0 species 133 1930764 1 Sporosarcina sp. P33 species 119 0 Sporosarcina sp. P37 1 1930546 1571 1 Sporosarcina ureae 0 643 species 0 5 802 genus 648800 3 1 Solibacillus Solibacillus silvestris 1 76853 species 418 0 2637870 1 no rank 379 0 379 species 0 Solibacillus sp. R5-41 1 2048654 1 0 genus 272 648802 2 1 Rummeliibacillus 0 271 species 1 241244 Rummeliibacillus stabekisii 1 Alicyclobacillaceae 186823 9 family 628 0 1 genus 129 2 0 1 Alicyclobacillus 29330 2 Alicyclobacillus acidocaldarius 1 405212 species 127 0 0 1 genus 284 432330 3 1 Tumebacillus species 183 0 Tumebacillus avium 1 1903704 0 100 species 1 1214604 Tumebacillus algifaecis 1129704 3 1 Kyrpidia 0 2 214 genus 0 species 112 1 33943 Kyrpidia tusciae species 100 0 Kyrpidia sp. EA-1 1 2055160 186821 1 family 117 0 no rank 117 0 1 663587 85683 1 [Bacillus] selenitireducens 0 species 117 Staphylococcaceae 1 40 90964 family 16174 24 0 0 142 14929 genus 33 1279 Staphylococcus 1 Staphylococcus carnosus 1 1281 359 species 0 0 412 species 1 29385 Staphylococcus saprophyticus 446 species 0 Staphylococcus lugdunensis 1 28035 0 species 470 1 985002 Staphylococcus argenteus 0 359 species 29384 1 Staphylococcus kloosii 1 170573 Staphylococcus pettenkoferi 0 177 species 283734 1 Staphylococcus pseudintermedius 0 257 species 1 1288 Staphylococcus xylosus 0 799 species species 1032 0 Staphylococcus pasteuri 1 45972 Staphylococcus warneri 1 1292 419 species 0 Staphylococcus hominis 1290 1 484 species 0 0 480 species 1 643214 Staphylococcus stepanovicii Staphylococcus equorum 1 246432 species 585 0 Staphylococcus capitis 1 29388 species 499 0 0 species 217 1 1284 Staphylococcus hyicus 420 no rank 0 91994 1 420 species 0 Staphylococcus sp. AntiMn-1 1715860 1 species 307 0 Staphylococcus schleiferi 1295 1 0 species 242 155085 1 Staphylococcus lutrae 1 308354 Staphylococcus simiae 0 472 species 244 species 0 Staphylococcus simulans 1286 1 species 448 0 Staphylococcus nepalensis 214473 1 Staphylococcus cohnii 1 29382 440 species 0 0 species 367 1 70255 Staphylococcus condimenti 1 46127 Staphylococcus felis 0 species 304 985762 1 Staphylococcus agnetis 0 284 species 0 577 species 1296 1 Staphylococcus sciuri Staphylococcus epidermidis 1 1282 species 837 0 Staphylococcus haemolyticus 1 1283 502 species 0 Staphylococcus piscifermentans 1 70258 species 223 0 0 199 species 1 1294 Staphylococcus muscae Staphylococcus succinus 1 61015 402 species 0 1 1280 Staphylococcus aureus 0 species 1524 821 genus 4 0 Macrococcus 1 4 69965 1 2619255 0 no rank 321 Macrococcus sp. IME1552 1898474 1 321 species 0 0 species 219 1855823 1 Macrococcus canis species 277 0 Macrococcus caseolyticus 1 69966 45669 1 93 genus 0 Salinicoccus halodurans 1 407035 species 93 0 genus 307 0 1 2005363 307 species 0 Auricoccus indicus 1849491 1 0 927 no rank 539002 9 7 539742 no rank 581 0 33986 7 1 Exiguobacterium 15 0 581 genus species 81 0 Exiguobacterium antarcticum 1 132920 species 95 0 Exiguobacterium sibiricum 332410 1 0 no rank 390 2644629 4 species 126 0 Exiguobacterium sp. ZWU0009 1 1224749 0 118 species 1849031 1 Exiguobacterium sp. U13-1 0 88 species 1399115 1 Exiguobacterium sp. MH3 0 58 species 1 360911 Exiguobacterium sp. AT1b 539738 2 0 346 no rank 2 1378 Gemella 1 1 0 genus 346 1 2624949 no rank 345 0 345 species 0 Gemella sp. oral taxon 928 1 1785995 Paenibacillaceae 1 46 186822 9884 family 23 0 0 1 genus 85 2 76632 Thermobacillus 1 0 84 species 377615 1 Thermobacillus composti 1079 genus 0 10 1 Brevibacillus 55080 4 577 species 0 Brevibacillus laterosporus 1 1465 species 198 0 Brevibacillus formosus 1 54913 1393 1 Brevibacillus brevis 0 species 294 44249 36 1 Paenibacillus 0 65 8394 genus 0 166 species 159743 1 Paenibacillus terrae 185978 13 2892 no rank 0 1 1695218 Paenibacillus sp. 32O-W 0 77 species 2069255 1 Paenibacillus sp. lzh-N1 0 169 species 1 1536771 Paenibacillus sp. FSL R5-0912 0 130 species species 118 0 Paenibacillus sp. JDR-2 1 324057 1 1536773 Paenibacillus sp. FSL R7-0331 0 141 species 0 species 806 1566358 1 Paenibacillus sp. IHBB 10380 species 106 0 Paenibacillus sp. Y412MC10 481743 1 0 232 species 1870819 1 Paenibacillus sp. BIHB4019 Paenibacillus sp. FSL H7-0737 1536775 1 208 species 0 Paenibacillus sp. FSL P4-0081 1536769 1 species 277 0 124 species 0 Paenibacillus sp. FSL R7-0273 1536772 1 Paenibacillus sp. FSL H7-0357 1 1536774 172 species 0 Paenibacillus sp. FSL R5-0345 1536770 1 332 species 0 160799 1 Paenibacillus borealis 0 species 153 0 189 species 1178515 1 Paenibacillus swuensis 0 species 1198 1 1406 Paenibacillus polymyxa 1 1126833 Paenibacillus beijingensis 0 species 132 1 2044880 0 138 species group 1 483937 Paenibacillus riograndensis 0 species 138 Paenibacillus crassostreae 1763538 1 256 species 0 0 267 species 1 189426 Paenibacillus odorifer 0 225 species 1 1616788 Paenibacillus bovis species 517 0 Paenibacillus donghaensis 1 414771 Paenibacillus stellifer 1 169760 species 104 0 1 365617 Paenibacillus sabinae 0 species 73 Paenibacillus graminis 189425 1 species 193 0 Paenibacillus mucilaginosus 61624 1 273 species 0 0 131 species 1 1870820 Paenibacillus ihbetae 1 162209 Paenibacillus naphthalenovorans 0 species 92 1 172713 Paenibacillus kribbensis 0 156 species 1464 1 Paenibacillus larvae 0 286 species 1 528191 Paenibacillus xylanexedens 0 174 species 0 365 species 44251 1 Paenibacillus durus 59893 1 Paenibacillus peoriae 0 species 213 0 136 species 1462996 1 Paenibacillus yonginensis 85151 3 no rank 303 0 55079 3 1 Aneurinibacillus 0 5 genus 303 0 species 143 1500254 1 Aneurinibacillus soli 0 no rank 155 1 2642329 Aneurinibacillus sp. XH2 1 1450761 155 species 0 34934 order 82 0 1 Lactobacillales 186826 163 0 12 11362 family 1300 49 1 Streptococcaceae 1 Streptococcus 1301 43 9330 genus 98 0 0 140 species 1 1888195 Streptococcus himalayensis 0 141 species 1 1814128 Streptococcus halotolerans 1308 1 Streptococcus thermophilus 0 276 species 271 species 0 Streptococcus infantarius 102684 1 0 482 species 1311 1 Streptococcus agalactiae 0 812 species group 671232 3 0 species 356 1328 1 Streptococcus anginosus 1338 1 Streptococcus intermedius 0 species 309 1 76860 Streptococcus constellatus 0 species 147 197614 1 Streptococcus pasteurianus 0 175 species 1 45634 Streptococcus cristatus 0 species 104 188 species 0 Streptococcus iniae 1 1346 1 1305 Streptococcus sanguinis 0 species 117 7 2608887 no rank 835 0 Streptococcus sp. 'group B' 1 1319 species 245 0 1 1839799 Streptococcus sp. FDAARGOS_192 0 species 119 species 99 0 Streptococcus sp. oral taxon 431 712633 1 Streptococcus sp. A12 1 1759399 species 118 0 1 1156431 Streptococcus sp. I-G2 0 77 species 0 73 species 1 1156433 Streptococcus sp. I-P16 Streptococcus sp. NPS 308 1902136 1 species 104 0 species 187 0 Streptococcus macedonicus 59310 1 0 125 species 400065 1 Streptococcus merionis Streptococcus salivarius 1 1304 401 species 0 0 222 species 1 1348 Streptococcus parauberis Streptococcus mitis 28037 1 274 species 0 species 107 0 Streptococcus acidominimus 1326 1 Streptococcus pneumoniae 1 1313 species 352 0 387 species 0 Streptococcus gallolyticus 1 315405 1 257758 Streptococcus pseudopneumoniae 0 88 species 0 126 species 1 1811193 Streptococcus pantholopis species 416 0 Streptococcus pyogenes 1 1314 1 1307 Streptococcus suis 0 species 546 species 141 0 Streptococcus marmotae 1825069 1 1 150055 Streptococcus lutetiensis 0 179 species Streptococcus uberis 1349 1 species 242 0 367 species 0 Streptococcus gordonii 1 1302 1303 1 Streptococcus oralis 0 species 272 0 species group 507 2 119603 0 319 species 1 1336 Streptococcus equi 188 species 0 Streptococcus dysgalactiae 1 1334 Streptococcus pluranimalium 1 82348 172 species 0 Streptococcus parasanguinis 1 1318 154 species 0 1335 1 Streptococcus equinus 0 species 118 Streptococcus mutans 1309 1 308 species 0 genus 2020 0 4 Lactococcus 1 5 1357 1363 1 Lactococcus garvieae 0 333 species 251 species 0 Lactococcus piscium 1364 1 1358 1 Lactococcus lactis 0 species 1305 Lactococcus raffinolactis 1 1366 species 127 0 279 no rank 0 263855 1 Lactobacillales bacterium 1 1993866 279 species 0 family 2692 0 3 1 Leuconostocaceae 81850 17 46255 6 1 Weissella 0 8 genus 812 1 165096 Weissella koreensis 0 181 species Weissella jogaejeotgali 1 1631871 species 186 0 177 species 0 Weissella paramesenteroides 1 1249 759620 1 Weissella ceti 0 138 species Weissella cibaria 1 137591 species 122 0 1 Leuconostoc 1243 9 genus 1656 14 0 2685106 1 177 no rank 0 0 177 species 1 979982 Leuconostoc sp. C2 Leuconostoc lactis 1 1246 species 82 0 Leuconostoc garlicum 1 255248 66 species 0 0 species 135 33964 1 Leuconostoc citreum species 355 0 Leuconostoc gelidum 1 1244 Leuconostoc carnosum 1252 1 species 226 0 136609 1 Leuconostoc kimchii 0 species 184 0 417 species 1245 1 Leuconostoc mesenteroides 46254 1 genus 221 0 221 species 0 Oenococcus oeni 1247 1 0 1 991 family 8 186827 Aerococcaceae 1 genus 990 11 0 1 Aerococcus 1375 7 1377 1 Aerococcus viridans 0 species 169 112 species 0 Aerococcus urinaehominis 128944 1 1 1376 Aerococcus urinae 0 species 221 119206 1 Aerococcus sanguinicola 0 77 species species 234 0 Aerococcus urinaeequi 51665 1 166 species 0 Aerococcus christensenii 87541 1 1 Enterococcaceae 81852 19 4564 family 11 0 genus 3046 27 0 Enterococcus 1 12 1350 Enterococcus hirae 1 1354 318 species 0 0 475 species 1352 1 Enterococcus faecium Enterococcus casseliflavus 37734 1 140 species 0 417368 1 Enterococcus thailandicus 0 306 species Enterococcus durans 1 53345 species 234 0 0 species 223 1 2005703 Enterococcus wangshanyuanii 1351 1 Enterococcus faecalis 0 species 552 1 53346 Enterococcus mundtii 0 species 280 no rank 491 0 2608891 3 0 152 species 1 2057791 Enterococcus sp. CR-Ec1 2060306 1 Enterococcus sp. FDAARGOS_163 0 species 157 species 182 0 Enterococcus sp. FDAARGOS_375 1 2060307 8 0 722 genus 3 2737 Vagococcus 1 519472 1 Vagococcus teuberi 0 382 species 0 332 species 633807 1 Vagococcus penaei 1 33969 0 genus 406 species 406 0 Melissococcus plutonius 1 33970 1 0 379 genus 2 51668 Tetragenococcus 1 Tetragenococcus halophilus 51669 1 species 378 0 6 0 2449 family 10 186828 Carnobacteriaceae 1 0 genus 498 1 191769 1 2632303 0 498 no rank 1911586 1 Marinilactibacillus sp. 15R 0 498 species 0 4 genus 450 3 1470540 Jeotgalibaca 1 no rank 238 0 1 2621505 species 238 0 Jeotgalibaca sp. PTS2502 1 1903686 1 708126 Jeotgalibaca dankookensis 0 208 species 1 Carnobacterium 2747 5 1495 genus 0 7 0 species 537 1 2751 Carnobacterium maltaromaticum Carnobacterium inhibens 147709 1 322 species 0 2 257487 no rank 629 0 0 384 species 208596 1 Carnobacterium sp. 17-4 245 species 0 Carnobacterium sp. CP1 1564681 1 1 Lactobacillaceae 33958 58 12515 family 0 26 0 10 genus 1215 6 1253 Pediococcus 1 Pediococcus pentosaceus 1255 1 species 345 0 0 190 species 1 114090 Pediococcus inopinatus Pediococcus damnosus 1 51663 206 species 0 315 species 0 Pediococcus claussenii 187452 1 149 species group 0 1 1670797 0 species 149 1254 1 Pediococcus acidilactici 2767893 3 0 genus 372 Lactobacillus buchneri 1 1581 species 121 0 108 species 0 Lactobacillus parabuchneri 1 152331 1 1138822 Lactobacillus curieae 0 143 species 0 genus 170 1 2767877 0 species 170 1 148814 Lactobacillus kunkeei 0 419 genus 2767885 2 0 281 species 1 1599 Lactobacillus sakei 0 138 species 28038 1 Lactobacillus curvatus 595 genus 0 3 2759736 0 species 207 1 1582 Lactobacillus casei 0 187 species 1597 1 Lactobacillus paracasei 0 species 201 1 47715 Lactobacillus rhamnosus 3 2767886 genus 254 0 637971 1 Lactobacillus koreensis 0 species 66 Lactobacillus brevis 1580 1 154 species 0 Lactobacillus zymae 267363 1 34 species 0 genus 80 0 1 2767876 Lactobacillus amylophilus 1 1603 80 species 0 genus 673 0 2742598 3 1 1598 Lactobacillus reuteri 0 species 505 1613 1 Lactobacillus fermentum 0 species 83 0 85 species 1 97478 Lactobacillus mucosae genus 146 0 1 2767892 0 146 species 240427 1 Lactobacillus paracollinoides 2767889 2 genus 419 0 0 species 256 1 375175 Lactobacillus backii Lactobacillus coryniformis 1 1610 163 species 0 2767890 1 189 genus 0 1193095 1 Lactobacillus hokkaidonensis 0 189 species 2767887 4 0 1180 genus Lactobacillus agilis 1 1601 species 93 0 species 802 0 Lactobacillus salivarius 1 1624 203 species 0 Lactobacillus acidipiscis 89059 1 species 82 0 Lactobacillus ruminis 1623 1 6 2767879 0 genus 1508 0 277 species 392416 1 Lactobacillus crustorum 273 species 0 Lactobacillus ginsenosidimutans 1 1007676 1 1602 Lactobacillus alimentarius 0 255 species 1 1847728 Lactobacillus allii 0 315 species 0 species 159 1 1074467 Lactobacillus heilongjiangensis species 229 0 Lactobacillus farciminis 1612 1 3 2767842 genus 813 0 Lactobacillus paraplantarum 60520 1 100 species 0 Lactobacillus pentosus 1589 1 107 species 0 species 606 0 Lactobacillus plantarum 1 1590 genus 3976 100 0 1 Lactobacillus 1578 16 Lactobacillus delbrueckii 1584 1 270 species 0 0 species 210 1600 1 Lactobacillus acetotolerans 1 1587 Lactobacillus helveticus 0 406 species 0 species 193 1 267818 Lactobacillus kefiranofaciens 1 83683 Lactobacillus amylolyticus 0 140 species species 270 0 Lactobacillus jensenii 1 109790 Lactobacillus johnsonii 1 33959 529 species 0 1579 1 Lactobacillus acidophilus 0 239 species 1 52242 Lactobacillus gallinarum 0 196 species 4 2620435 0 632 no rank 281 species 0 Lactobacillus sp. wkB8 1 1545702 species 107 0 Lactobacillus sp. CBA3606 1 2099789 2108362 1 Lactobacillus sp. D1501 0 91 species 0 species 153 1 2099788 Lactobacillus sp. CBA3605 species 521 0 Lactobacillus gasseri 1 1596 1 1604 Lactobacillus amylovorus 0 species 270 0 480 genus 2 2767881 0 species 276 1 53444 Lactobacillus lindneri 1625 1 Lactobacillus sanfranciscensis 0 204 species class 2811 5 0 1 Negativicutes 909932 27 1 Acidaminococcales 1843488 4 order 176 1 0 909930 3 0 family 175 genus 175 2 0 1 Acidaminococcus 904 3 1 905 Acidaminococcus fermentans 0 species 96 1 187327 Acidaminococcus intestini 0 77 species 13 909929 Selenomonadales 1 0 6 order 1801 960 family 0 1 Sporomusaceae 1 4 1843490 1 Pelosinus 365348 3 genus 959 0 2 species 476 0 Pelosinus fermentans 365349 1 2629460 1 0 481 no rank 481 species 0 Pelosinus sp. UFO1 484770 1 8 1843491 Selenomonadaceae 1 1 0 family 835 0 381 genus 158846 1 381 species 0 Megamonas hypermegale 1 158847 genus 453 8 0 Selenomonas 1 6 970 Selenomonas ruminantium 971 1 species 131 0 3 2637378 no rank 225 0 Selenomonas sp. oral taxon 920 1884263 1 species 71 0 80 species 0 Selenomonas sp. oral taxon 136 713030 1 74 species 0 Selenomonas sp. oral taxon 478 1 712538 1 69823 Selenomonas sputigena 0 89 species order 829 0 3 Veillonellales 1 9 1843489 family 826 5 0 Veillonellaceae 1 8 31977 0 genus 59 1 909928 species 59 0 Negativicoccus massiliensis 1702287 1 2 0 95 genus 906 2 1 Megasphaera Megasphaera elsdenii 1 907 species 93 0 genus 298 0 1 39948 298 species 0 Dialister pneumosintes 39950 1 Veillonella 1 3 29465 genus 369 0 2 Veillonella parvula 1 29466 species 283 0 Veillonella rodentium 248315 1 species 84 0 1676648 4 class 113 0 1 Limnochordales 1676649 4 113 order 1 0 0 2 112 family 3 1676650 Limnochordaceae 1 1 Limnochorda 1676651 2 110 genus 0 6 1 1555112 Limnochorda pilosa 0 species 104 0 2 935 class 10 526524 Erysipelotrichia 1 7 0 order 933 9 526525 Erysipelotrichales 1 926 family 5 0 1 Erysipelotrichaceae 128827 8 310 genus 2 0 1 Turicibacter 191303 2 2638206 1 0 308 no rank 1712675 1 Turicibacter sp. H121 0 species 308 544447 1 0 134 no rank species 134 0 Erysipelotrichaceae bacterium I46 1 1834207 3 0 genus 426 1647 3 1 Erysipelothrix species 219 0 Erysipelothrix larvae 1 1514105 1 1648 Erysipelothrix rhusiopathiae 0 204 species 0 51 genus 1 1729679 1 1702221 Faecalibaculum rodentium 0 species 51 phylum 1856 0 200795 35 class 585 0 1 1 Chloroflexia 32061 11 order 584 3 0 Chloroflexales 1 10 32064 1508594 5 0 suborder 323 1106 5 1 Chloroflexaceae 1 0 family 323 7 0 322 genus 4 1107 Chloroflexus 1 0 species 149 1 152260 Chloroflexus aggregans 1 Chloroflexus aurantiacus 1108 2 species 166 0 83 Chloroflexus sp. Y-400-fl 480224 1 strain 83 0 1508595 4 suborder 258 0 Roseiflexaceae 1 4 1508635 family 258 1 0 Roseiflexus 1 3 120961 genus 257 0 1 120962 1 Roseiflexus castenholzii 0 species 134 0 no rank 122 1 2609473 Roseiflexus sp. RS-1 1 357808 species 122 0 475962 3 1 Caldilineae 0 1 class 141 order 140 0 2 475963 0 2 family 140 475964 2 1 Caldilineaceae 1 233191 0 genus 138 138 species 0 Caldilinea aerophila 133453 1 1 Thermomicrobia 189775 3 193 class 0 1 1 85000 127 subclass 0 85001 1 127 order 0 suborder 127 0 1 255728 1 85002 0 family 127 2056 1 genus 127 0 127 species 0 Sphaerobacter thermophilus 1 2057 189776 1 65 order 0 0 65 family 189777 1 499 1 genus 65 0 0 65 species 1 500 Thermomicrobium roseum class 236 2 0 Ardenticatenia 1 4 1382928 order 234 3 0 1 Ardenticatenales 1382929 3 2 0 231 family 2 1382930 Ardenticatenaceae 1 229 genus 0 1 1988031 1806508 1 Candidatus Promineofilum breve 0 species 229 1 Anaerolineae 292625 7 class 274 0 1 0 1 273 order 292629 6 1 Anaerolineales 272 family 0 2 Anaerolineaceae 1 5 292628 233189 1 0 97 genus Anaerolinea thermophila 1 167964 97 species 0 1324991 1 0 no rank 64 1 1889813 Anaerolineaceae bacterium oral taxon 439 0 species 64 1 Brevefilum 2019482 2 109 genus 0 1 108 species 0 Brevefilum fermentans 1986204 1 7 301297 Dehalococcoidia 1 0 2 class 427 670486 3 1 Dehalogenimonas 0 4 138 genus species 54 0 Dehalogenimonas lykanthroporepellens 552810 1 1839801 1 Dehalogenimonas formicexedens 0 80 species 0 order 287 1202465 3 3 1202464 0 287 family genus 287 4 0 Dehalococcoides 1 3 61434 1 237581 0 64 no rank 0 species 64 1 1522671 Dehalococcoides sp. UCH007 0 219 species 1 61435 Dehalococcoides mccartyi 1798711 155 0 clade 3592986 Cyanobacteria 1 155 1117 phylum 3592986 0 9 307596 6 1 Gloeobacteria 0 5 class 267 Gloeobacterales 1 5 307595 262 order 5 0 257 family 2 0 1 Gloeobacteraceae 1890422 4 33071 3 1 Gloeobacter 4 0 genus 255 0 132 species 1 1416614 Gloeobacter kilaueensis Gloeobacter violaceus 1 33072 species 119 0 1301283 45 subclass 108487 0 1 Chroococcales 1118 24 order 12554 18 0 1890450 10 1 Aphanothecaceae 0 5 family 4898 0 no rank 398 2 92682 1 Halothece 76023 2 genus 398 1 0 1 2632878 no rank 397 0 Halothece sp. PCC 7418 65093 1 species 397 0 263510 1 0 845 genus 1 2546360 species 845 0 Cyanothece sp. ATCC 51142 1 43989 strain 845 0 1046 genus 0 1 Candidatus Atelocyanobacterium 1 2 1453359 0 1045 species 713887 1 Candidatus Atelocyanobacterium thalassa 28070 2 1569 genus 0 801 species 0 2546356 1 strain 801 0 Cyanothece sp. PCC 7424 1 65393 0 768 species 1 2546359 0 strain 768 497965 1 Cyanothece sp. PCC 7822 genus 1035 0 2546365 2 2 2546366 1035 species 0 495 strain 0 Cyanothece sp. PCC 8801 41431 1 1 395962 Cyanothece sp. PCC 8802 0 540 strain family 2128 0 14 Microcystaceae 1 4 1890449 Microcystis 1 3 1125 2114 genus 0 11 no rank 632 0 2643300 1 species 632 0 Microcystis sp. MC19 1967666 1 0 species 1471 1 1126 Microcystis aeruginosa family 4315 0 20 1 Chroococcaceae 1890464 7 1 Geminocystis 669357 3 2236 genus 19 0 2625037 2 2217 no rank 0 1 1615909 Geminocystis sp. NIES-3708 0 1158 species 0 1059 species 1 1617448 Geminocystis sp. NIES-3709 515 genus 0 102231 1 515 no rank 0 2623012 1 Gloeocapsa sp. PCC 7428 1173026 1 515 species 0 268175 2 1 Chondrocystis 5 0 genus 1544 0 1539 no rank 1 2648896 species 1539 0 Chondrocystis sp. NIES-4102 1 2005460 Cyanobacteriaceae 1 2 1890452 1195 family 0 3 102234 1 genus 1192 0 0 1192 species 379064 1 Cyanobacterium aponinum 95933 order 32 0 1 Oscillatoriales 1150 21 Coleofasciculaceae 1 3 1892251 family 181 0 7 4 0 genus 174 63132 2 1 Geitlerinema no rank 170 0 1 2648775 Geitlerinema sp. PCC 7407 1 1173025 170 species 0 1892249 3 1 Cyanothecaceae 0 15 230 family 43 0 genus 215 2 43988 Cyanothece 1 1 2649277 no rank 172 0 172 species 0 Cyanothece sp. PCC 7425 1 395961 19 0 family 90450 1892252 5 1 Microcoleaceae 9 0 genus 367 44471 2 1 Microcoleus 358 no rank 0 1 2642155 1173027 1 Microcoleus sp. PCC 7113 0 species 358 1205 2 1 Trichodesmium 0 1 genus 90064 1 1206 Trichodesmium erythraeum 0 species 90063 34 0 family 4318 1892254 6 1 Oscillatoriaceae 1045 genus 0 6 Oscillatoria 1 3 1158 0 501 species 482564 1 Oscillatoria nigro-viridis 118323 1 Oscillatoria acuminata 0 538 species 3239 genus 8 0 Moorea 1 2 1155738 0 species 3231 1155739 1 Moorea producens Gomontiellaceae 1 3 1892255 722 family 0 3 genus 719 0 4 1 Crinalium 241421 2 1 241425 Crinalium epipsammum 0 species 715 1983111 1 461 no rank 0 718217 1 cyanobacterium endosymbiont of Epithemia turgida 0 species 461 order 697 0 4 1 Chroococcidiopsidales 1890505 3 family 693 0 9 1 Chroococcidiopsidaceae 1890528 2 1 54298 0 genus 684 Chroococcidiopsis thermalis 1 54299 684 species 0 Pleurocapsales 1 7 52604 order 2952 8 0 0 9 414 family 1890500 2 1 Hyellaceae 44474 1 0 405 genus 0 405 species 1 54308 Pleurocapsa minor family 2530 4 0 Dermocarpellaceae 1 4 1890498 1 Stanieria 102115 3 genus 2526 13 0 1 2642663 no rank 1234 0 0 1234 species 1807358 1 Stanieria sp. NIES-3757 0 1279 species 102116 1 Stanieria cyanosphaera 34 1161 Nostocales 1 0 44 order 19606 42 0 family 10785 18 1162 Nostocaceae 1 genus 2979 0 40 1 Anabaena 1163 4 0 1022 species 1165 1 Anabaena cylindrica 2619674 2 no rank 1917 0 978 species 0 Anabaena sp. WA102 1 1647413 species 939 0 Anabaena sp. 90 46234 1 264688 3 1 Trichormus 8 0 1379 genus 646 species 0 Trichormus variabilis 1 264691 Trichormus azollae 1 1164 species 725 0 1 Nostoc 1177 10 genus 6385 0 102 1 1306274 Nostoc flagelliforme 0 801 species 2593658 7 no rank 4796 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 1 species 617 0 species 913 0 Nostoc sp. NIES-3756 1751286 1 629 species 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 1 735 species 0 Nostoc sp. PCC 7524 1 28072 0 species 599 103690 1 Nostoc sp. PCC 7120 1 317936 Nostoc sp. PCC 7107 0 709 species 1869241 1 Nostoc sp. CENA543 0 594 species Nostoc punctiforme 1 272131 686 species 0 family 1062 3 0 Hapalosiphonaceae 1 3 1892263 5 0 1059 genus 1190 2 1 Fischerella 1 494603 0 1054 no rank 1054 species 0 Fischerella sp. NIES-3754 1 1752063 1 1219117 0 688 no rank 688 species 0 Nostocales cyanobacterium HT-58-2 1 1940762 1 Rivulariaceae 1185 3 family 1511 16 0 2 373984 Rivularia 1 3 0 1495 genus 0 1492 no rank 1 2676603 1 373994 Rivularia sp. PCC 7116 0 1492 species 2661849 8 family 5516 0 8 1186 Calothrix 1 77 0 5516 genus no rank 4751 0 2619626 6 706 species 0 Calothrix sp. 336/3 1337936 1 2005469 1 Calothrix sp. NIES-4071 0 species 1241 Calothrix sp. PCC 7507 1 99598 608 species 0 Calothrix sp. NIES-4101 2005461 1 species 860 0 Calothrix sp. NIES-3974 2005462 1 species 617 0 719 species 0 Calothrix sp. NIES-2098 1954171 1 688 species 0 Calothrix parietina 32054 1 Synechococcales 1 58 1890424 order 3460507 0 79 family 450 1 0 1 Acaryochloridaceae 1890429 3 1 Acaryochloris 155977 2 449 genus 3 0 species 446 0 Acaryochloris marina 155978 1 family 3378560 0 16 1 Prochloraceae 1213 5 Prochlorococcus 1 4 1218 3378544 genus 157 0 797503 no rank 0 2 2627481 species 5531 0 Prochlorococcus sp. MIT 0801 1 1501269 0 species 791972 1501268 1 Prochlorococcus sp. MIT 0604 species 2580884 0 Prochlorococcus marinus 1 1219 3 1890436 Pseudanabaenaceae 1 0 1 487 family 3 0 genus 486 1152 2 1 Pseudanabaena 2593292 1 no rank 483 0 1 82654 Pseudanabaena sp. PCC 7367 0 483 species 0 751 family 4 1890428 Synechocystis 1 4 1142 genus 751 29 0 2640012 3 0 722 no rank 0 199 species 2116702 1 Synechocystis sp. IPPAS B-1465 1148 1 Synechocystis sp. PCC 6803 0 199 species Synechocystis sp. PCC 6714 1 1147 species 324 0 78705 family 0 18 1 Synechococcaceae 1890426 34 2 0 genus 132 146785 2 1 Thermosynechococcus 0 130 species 1 146786 Thermosynechococcus elongatus 0 2 438 genus 13034 2 1 Dactylococcopsis 436 species 0 Dactylococcopsis salina 1 292566 1 Cyanobium 167375 3 1657 genus 0 30 1 2627006 0 no rank 742 Cyanobium sp. NIES-981 1851505 1 742 species 0 0 species 885 1 59930 Cyanobium gracile genus 76460 491 0 1 Synechococcus 1129 26 2626047 23 75586 no rank 0 Synechococcus sp. PCC 7502 1 1173263 501 species 0 1 316278 Synechococcus sp. RCC307 0 2049 species Synechococcus sp. KORDI-100 1 1280380 species 6035 0 1350461 1 Synechococcus sp. UTEX 2973 0 species 244 1916956 1 Synechococcus sp. SynAce01 0 species 501 Synechococcus sp. PCC 8807 1 195248 species 120 0 0 species 136 321332 1 Synechococcus sp. JA-2-3B'a(2-13) Synechococcus sp. PCC 7117 195498 1 140 species 0 166314 1 Synechococcus sp. WH 8109 0 17921 species Synechococcus sp. CC9605 1 110662 28927 species 0 758 species 0 Synechococcus sp. WH 7803 1 32051 Synechococcus sp. KORDI-49 585423 1 species 1876 0 0 146 species 1 374982 Synechococcus sp. PCC 73109 species 139 0 Synechococcus sp. PCC 6312 1 195253 Synechococcus sp. NIES-970 1 1827144 188 species 0 Synechococcus sp. JA-3-3Ab 1 321327 species 101 0 1 32049 Synechococcus sp. PCC 7002 0 118 species species 3967 0 Synechococcus sp. WH 8102 84588 1 0 species 3968 1 29410 Synechococcus sp. WH 8103 64471 1 Synechococcus sp. CC9311 0 389 species Synechococcus sp. KORDI-52 585425 1 6660 species 0 Synechococcus sp. CC9902 1 316279 species 525 0 177 species 0 Synechococcus sp. PCC 7003 1 374981 0 126 species 1 33070 Synechococcus lividus Synechococcus elongatus 1 32046 species 257 0 2303730 2 275 family 0 275 genus 2 0 Halomicronema 1 2 170610 Halomicronema hongdechloris 1209493 1 273 species 0 10 0 family 1200 6 1890438 Leptolyngbyaceae 1 genus 1190 0 13 Leptolyngbya 1 5 47251 Leptolyngbya boryana 1 1184 249 species 0 0 928 no rank 2650499 3 0 481 species 1 111781 Leptolyngbya sp. PCC 7376 1080068 1 Leptolyngbya sp. O-77 0 244 species 1752064 1 Leptolyngbya sp. NIES-3755 0 203 species 0 2589 phylum 34 1297 34 188787 Deinococci 1 0 13 2589 class 1 Thermales 68933 16 1226 order 6 0 188786 15 1 Thermaceae 0 12 1220 family 208447 1 0 genus 118 Oceanithermus profundus 1 187137 118 species 0 3 65551 Meiothermus 1 0 4 250 genus 0 species 152 1 277 Meiothermus ruber 0 species 94 1 52022 Meiothermus silvanus 186191 2 1 Marinithermus 2 0 genus 105 103 species 0 Marinithermus hydrothermalis 1 186192 8 270 Thermus 1 15 0 genus 735 0 225 species 274 1 Thermus thermophilus 1 271 Thermus aquaticus 0 94 species 1 37636 Thermus scotoductus 0 species 67 Thermus parvatiensis 456163 1 93 species 0 Thermus oshimai 1 56957 89 species 0 0 98 species 56956 1 Thermus brockianus 0 54 no rank 1 2619321 species 54 0 Thermus sp. CCB_US3_UF1 1 1111069 2762275 2 0 order 139 332247 2 0 family 139 1 Truepera 332248 2 genus 139 5 0 1 332249 Truepera radiovictrix 0 134 species 1211 order 0 13 1 Deinococcales 118964 15 2 0 1198 family 14 183710 Deinococcaceae 1 Deinococcus 1 13 1298 genus 1196 25 0 0 species 106 502394 1 Deinococcus gobiensis 0 species 77 1299 1 Deinococcus radiodurans 0 species 120 1 55148 Deinococcus proteolyticus Deinococcus swuensis 1 1182571 species 97 0 Deinococcus actinosclerus 1768108 1 species 90 0 Deinococcus geothermalis 68909 1 83 species 0 0 113 no rank 2623546 1 0 species 113 1 2080419 Deinococcus sp. NW-56 species 90 0 Deinococcus maricopensis 1 309887 Deinococcus deserti 310783 1 79 species 0 0 species 128 1309411 1 Deinococcus soli Cha et al. 2016 1 432329 Deinococcus peraridilitoris 0 species 107 1182568 1 Deinococcus puniceus 0 81 species 17 57723 0 1125 phylum 15 204432 Acidobacteriia 1 7 0 class 976 8 0 order 770 11 204433 Acidobacteriales 1 family 762 0 9 Acidobacteriaceae 1 10 204434 33973 1 150 genus 0 33075 1 Acidobacterium capsulatum 0 species 150 Terriglobus 1 3 392733 genus 232 6 0 species 84 0 Terriglobus roseus 1 392734 1 870903 Terriglobus saanensis 0 species 142 Granulicella 1 3 940557 genus 237 5 0 species 140 0 Granulicella tundricola 940615 1 92 species 0 Granulicella mallensis 1 940614 Candidatus Koribacter 1 2 658061 genus 134 2 0 132 species 0 Candidatus Koribacter versatilis 658062 1 1 Solibacterales 332160 3 199 order 12 0 2 332161 family 187 0 332162 2 1 Candidatus Solibacter 5 0 genus 187 332163 1 Candidatus Solibacter usitatus 0 182 species class 149 0 2 1562566 1 Chloracidobacterium 458032 2 genus 149 0 2 0 species 147 1 458033 Chloracidobacterium thermophilum 3 2323 486 no rank 0 0 clade 486 3 1783234 95818 1 30 phylum 0 0 30 no rank 1 1895827 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 1 species 30 0 2 95901 0 456 clade 0 class 456 2 2497643 456 order 0 2497644 2 2 2497645 456 family 0 2 1551504 Candidatus Babela 1 6 0 genus 456 1 673862 Candidatus Babela massiliensis 0 species 450 0 phylum 323 4 1930617 Calditrichae 1 4 1962850 class 323 0 3 order 320 0 1 Calditrichales 1 3 1962852 319 family 0 2 1962854 Caldithrix 1 2 187144 genus 319 0 1 318 species 0 Caldithrix abyssi 187145 1 0 135027 clade 364 1783270 phylum 222 0 65842 4 Fibrobacteria 1 4 204430 class 222 0 2 0 220 order 218872 3 2 0 family 220 3 204431 Fibrobacteraceae 1 1 Fibrobacter 832 2 genus 218 2 0 0 216 species 1 833 Fibrobacter succinogenes 456828 1 0 294 phylum 0 genus 294 456826 1 0 species 294 456827 1 Candidatus Cloacimonas acidaminovorans 142182 7 547 phylum 0 7 219685 Gemmatimonadetes 1 0 9 class 547 0 10 order 538 219686 6 1 Gemmatimonadales family 528 2 0 1 Gemmatimonadaceae 219687 5 289 genus 0 1 Gemmatirosa 1 2 1706036 861299 1 Gemmatirosa kalamazoonesis 0 species 288 173479 2 0 genus 237 1 173480 Gemmatimonas aurantiaca 0 107 species 0 species 130 1 1379270 Gemmatimonas phototrophica clade 133964 0 352 68336 7 1134404 1266 phylum 0 Ignavibacteria 1 7 795747 1266 class 0 5 1 Ignavibacteriales 795748 6 1261 order 8 0 2 1334117 249 family 0 0 2 genus 249 2 1134403 Melioribacter 1 247 species 0 Melioribacter roseus 1134405 1 Ignavibacteriaceae 1 3 795749 family 1004 2 0 795750 2 1 Ignavibacterium 1 0 1002 genus 0 species 1001 591197 1 Ignavibacterium album phylum 130639 23 0 Bacteroidetes 1 324 976 67 200643 Bacteroidia 1 11 0 9446 class 1970189 12 1 Marinilabiliales 5 0 order 2027 2 0 709 family 1573805 2 1 Marinifilaceae 1 2060722 genus 707 0 Marinifilaceae bacterium SPP2 1 1717717 species 707 0 6 0 399 family 558415 3 1 Marinilabiliaceae Alkalitalea 1 2 1193324 393 genus 0 6 1 889453 Alkalitalea saponilacus 0 387 species 3 1970190 Salinivirgaceae 1 0 1 family 466 1 Salinivirga 1970191 2 genus 465 1 0 464 species 0 Salinivirga cyanobacteriivorans 1307839 1 0 1 family 448 1471398 3 1 Prolixibacteraceae genus 447 0 9 Draconibacterium 1 2 1471399 species 438 0 Draconibacterium orientale 1 1168034 Bacteroidales 1 54 171549 7408 order 0 18 5 333046 0 no rank 1409 718 genus 3 0 Candidatus Azobacteroides 1 2 511434 Candidatus Azobacteroides pseudotrichonymphae 1 511435 species 715 0 genus 691 0 3 909656 1 357276 Bacteroides dorei 0 245 species Bacteroides salanitronis 1 376805 species 208 0 1 821 Bacteroides vulgatus 0 238 species Rikenellaceae 1 5 171550 family 245 0 4 1 Alistipes 239759 2 genus 93 0 1 92 species 0 Alistipes finegoldii 214856 1 1 Mucinivorans 1611681 2 148 genus 0 7 1 1433126 Mucinivorans hirudinis 0 species 141 family 1893 0 2 Bacteroidaceae 1 11 815 18 0 1891 genus 10 816 Bacteroides 1 246 species 0 Bacteroides cellulosilyticus 246787 1 Bacteroides fragilis 1 817 424 species 0 species 123 0 Bacteroides helcogenes 290053 1 species 175 0 Bacteroides caecimuris 1 1796613 0 species 248 818 1 Bacteroides thetaiotaomicron 0 105 species 1 28119 Bacteroides zoogleoformans species 131 0 Bacteroides heparinolyticus 1 28113 Bacteroides caccae 47678 1 174 species 0 Bacteroides ovatus 1 28116 species 247 0 0 3 280 family 171551 4 1 Porphyromonadaceae 277 genus 0 5 Porphyromonas 1 3 836 167 species 0 Porphyromonas gingivalis 837 1 0 105 species 28123 1 Porphyromonas asaccharolytica Prevotellaceae 1 11 171552 family 1499 0 2 Prevotella 1 10 838 1497 genus 0 28 28129 1 Prevotella denticola 0 66 species 1 839 Prevotella ruminicola 0 species 111 species 97 0 Prevotella dentalis 1 52227 Prevotella jejuni 1177574 1 species 143 0 Prevotella enoeca 76123 1 111 species 0 0 species 137 1 589436 Prevotella fusca Prevotella melaninogenica 28132 1 species 144 0 1 2638335 0 228 no rank Prevotella sp. oral taxon 299 1 652716 228 species 0 species 432 0 Prevotella intermedia 1 28131 family 181 0 1853231 2 genus 181 0 4 Odoribacter 1 2 283168 0 species 177 28118 1 Odoribacter splanchnicus 76 family 0 2005519 1 genus 76 0 397864 1 species 76 0 Barnesiella viscericola 397865 1 1 185291 0 no rank 177 177 species 0 Bacteroidales bacterium CF 1 1400053 0 356 family 2005523 1 356 genus 0 346096 1 0 356 species 1 185300 Paludibacter propionicigenes 5 2005520 0 686 family Proteiniphilum 1 2 294702 175 genus 0 1 Proteiniphilum saccharofermentans 1642647 1 species 174 0 genus 116 0 1 307628 Petrimonas mucosa 1642646 1 116 species 0 2 0 genus 395 2 1784836 Fermentimonas 1 1562970 1 Fermentimonas caenicola 0 species 393 1 Tannerellaceae 2005525 7 588 family 3 0 genus 228 0 2 Tannerella 1 3 195950 0 132 species 1 28112 Tannerella forsythia 2620507 1 94 no rank 0 species 94 0 Tannerella sp. oral taxon HOT-286 712710 1 1 Parabacteroides 375288 3 357 genus 0 2 2649774 1 0 no rank 171 2025876 1 Parabacteroides sp. CT06 0 species 171 0 184 species 1 823 Parabacteroides distasonis Chitinophagia 1 16 1853228 class 2591 4 0 Chitinophagales 1 15 1853229 order 2587 8 0 14 563835 Chitinophagaceae 1 0 16 2579 family genus 303 3 0 Arachidicoccus 1 2 1769012 2636138 1 0 no rank 300 Arachidicoccus sp. BS20 1 1850526 species 300 0 genus 423 6 0 1 Niabella 379899 3 0 206 species 1 446683 Niabella soli Niabella ginsenosidivorans 1 1176587 species 211 0 1 Filimonas 649460 2 genus 329 1 0 1 477680 Filimonas lacunae 0 species 328 0 407 genus 1 398041 1 1492898 Flavisolibacter tropicus 0 407 species 1 Chitinophaga 79328 3 565 genus 0 1 307 species 0 Chitinophaga pinensis 79329 1 0 species 257 1 2029983 Chitinophagaceae bacterium 13 0 4 536 genus 354354 2 1 Niastella 0 532 species 1 354356 Niastella koreensis 24 117747 Sphingobacteriia 1 10 0 class 8089 12 0 order 8079 200666 23 1 Sphingobacteriales Sphingobacteriaceae 1 22 84566 family 8067 27 0 6 28453 Sphingobacterium 1 0 20 genus 2256 2609468 4 0 no rank 1812 338 species 0 Sphingobacterium sp. 21 743722 1 Sphingobacterium sp. G1-14 1 2003121 species 448 0 species 424 0 Sphingobacterium sp. B29 1 1933220 species 602 0 Sphingobacterium sp. ML3W 1 1538644 species 424 0 Sphingobacterium mizutaii 1010 1 no rank 838 0 84568 1 species 838 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 1 2 929509 Solitalea 1 0 10 genus 579 995 1 Solitalea canadensis 0 species 569 646 genus 6 0 1 Pseudopedobacter 1649482 2 1 151895 Pseudopedobacter saltans 0 species 640 84567 6 1 Pedobacter 20 0 2697 genus species 428 0 Pedobacter heparinus 1 984 no rank 541 0 2628915 1 1727164 1 Pedobacter sp. PACM 27299 0 541 species 1 430522 Pedobacter steynii 0 470 species 665 species 0 Pedobacter ginsengisoli 363852 1 573 species 0 Pedobacter cryoconitis 188932 1 1 Mucilaginibacter 423349 4 1024 genus 7 0 1 2617802 0 no rank 278 1 1300914 Mucilaginibacter sp. PAMC 26640 0 species 278 0 341 species 1234841 1 Mucilaginibacter sp. BJC16-A31 species 398 0 Mucilaginibacter gotjawali 1 1550579 Flavobacteriia 1 145 117743 class 94920 0 57 1 Flavobacteriales 200644 144 order 94863 0 81 0 10948 family 21 2762318 1 0 genus 420 2 28250 Ornithobacterium 1 419 species 0 Ornithobacterium rhinotracheale 28251 1 0 480 genus 1013 1 species 480 0 Weeksella virosa 1014 1 0 2 944 genus 34084 2 1 Riemerella Riemerella anatipestifer 1 34085 species 942 0 6 308865 Elizabethkingia 1 0 36 genus 3652 544 species 0 Elizabethkingia meningoseptica 238 1 Elizabethkingia genomosp. 4 1 1756150 502 species 0 Elizabethkingia anophelis 1 1117645 species 1292 0 Elizabethkingia miricola 172045 1 species 784 0 0 494 species 1756149 1 Elizabethkingia genomosp. 3 2782232 10 0 5452 no rank 27 0 genus 5228 59732 9 1 Chryseobacterium 903 species 0 Chryseobacterium glaciei 1685010 1 0 196 species 1 1265445 Chryseobacterium camelliae Chryseobacterium gallinarum 1324352 1 432 species 0 0 677 species 558152 1 Chryseobacterium piperi 1 253 Chryseobacterium indologenes 0 1071 species 3 2593645 0 1922 no rank species 634 0 Chryseobacterium sp. StRB126 878220 1 0 483 species 1721091 1 Chryseobacterium sp. IHB B 17019 Chryseobacterium sp. T16E-39 1 2015076 species 805 0 genus 224 0 2782228 1 536441 1 Chryseobacterium taklimakanense 0 species 224 no rank 1138 0 4 313602 2 1940138 Candidatus Walczuchella 1 0 1 genus 203 Candidatus Walczuchella monophlebidarum 1415657 1 species 202 0 7 0 genus 935 336809 2 1 Candidatus Sulcia 336810 1 Candidatus Sulcia muelleri 0 species 928 1 Ichthyobacteriaceae 1755828 3 560 family 2 0 genus 558 0 10 Ichthyobacterium 1 2 1755829 0 548 species 242600 1 Ichthyobacterium seriolicida Flavobacteriaceae 1 101 49546 family 77093 319 0 216431 1 genus 1026 0 Croceibacter atlanticus 313588 1 species 1026 0 0 41 genus 5036 1016 15 1 Capnocytophaga species 517 0 Capnocytophaga cynodegmi 1 28189 237 species 0 Capnocytophaga leadbetteri 1 327575 1848904 1 Capnocytophaga stomatis 0 species 437 Capnocytophaga canimorsus 1 28188 species 592 0 0 626 species 1 1019 Capnocytophaga sputigena species 240 0 Capnocytophaga ochracea 1 1018 species 224 0 Capnocytophaga gingivalis 1 1017 1957 no rank 0 6 2640652 0 421 species 1945658 1 Capnocytophaga sp. H4358 1 1316593 Capnocytophaga sp. oral taxon 864 0 species 262 Capnocytophaga sp. oral taxon 878 1 1316596 327 species 0 Capnocytophaga sp. oral taxon 323 1705617 1 189 species 0 423 species 0 Capnocytophaga sp. H2931 1 1945657 1 209053 Capnocytophaga sp. ChDC OS43 0 species 335 Capnocytophaga haemolytica 1 45243 165 species 0 3 286104 Winogradskyella 1 9 0 genus 2814 no rank 2805 0 2 2615021 Winogradskyella sp. J14-2 1 1936080 species 1191 0 754409 1 Winogradskyella sp. PG-2 0 1614 species 1 Nonlabens 363408 5 genus 3238 0 73 328515 1 Nonlabens dokdonensis 0 751 species no rank 1545 0 2 2615035 0 899 species 1 1476901 Nonlabens sp. MIC269 0 species 646 2058134 1 Nonlabens sp. MB-3u-79 319236 1 Nonlabens sediminis 0 species 869 1 417127 genus 1115 0 398743 1 Zunongwangia profunda 0 species 1115 0 genus 949 1 83612 Psychroflexus torquis 57029 1 species 949 0 1209327 1 1136 genus 0 0 species 1136 1 1803846 Flavivirga eckloniae 1 Gramella 292691 5 2371 genus 15 0 0 570 species 2126553 1 Gramella sp. SH35 719 species 0 Gramella forsetii 411153 1 Gramella flava 1 1486245 376 species 0 Gramella sp. LPB0144 1913577 1 691 species 0 genus 710 0 1 Aequorivita 1 2 153265 Aequorivita sublithincola 1 101385 species 709 0 0 genus 500 389486 1 2648869 1 0 no rank 500 0 500 species 1453352 1 Sediminicola sp. YIK13 11 0 5745 genus 5 104267 Tenacibaculum 1 0 1903 species 584609 1 Tenacibaculum jejuense species 1152 0 Tenacibaculum dicentrarchi 1 669041 Tenacibaculum todarodis 1850252 1 species 1544 0 Tenacibaculum maritimum 1 107401 1135 species 0 61432 2 0 1493 no rank 1242 species 0 Flavobacteriaceae bacterium UJ101 1150389 1 0 species 251 531844 1 Flavobacteriaceae bacterium 3519-10 3 111500 Muricauda 1 0 3 800 genus 1 516051 Muricauda lutaonensis 0 species 273 0 524 species 1 111501 Muricauda ruestringensis 0 175 genus 252306 1 Robiginitalea biformata 252307 1 175 species 0 1 393005 0 849 genus 2069432 1 Tamlana sp. UJ94 0 species 849 genus 4262 0 8 Cellulophaga 1 4 104264 Cellulophaga algicola 59600 1 species 1393 0 0 1531 species 1 979 Cellulophaga lytica 0 species 1330 76594 1 Cellulophaga baltica Polaribacter 1 6 52959 genus 8590 53 0 196858 3 0 4650 no rank 1 313598 Polaribacter sp. MED152 0 species 1818 1568 species 0 Polaribacter sp. BM10 1529069 1 1264 species 0 Polaribacter sp. ALD11 2058137 1 1 1774273 Polaribacter vadi 0 species 1945 Polaribacter reichenbachii 996801 1 1942 species 0 112040 1 genus 395 0 395 species 0 Zobellia galactanivorans 63186 1 0 766 genus 1 143222 0 766 no rank 2633436 1 Salegentibacter sp. T436 1729720 1 766 species 0 178469 1 609 genus 0 0 species 609 1 616991 Arenibacter algicola 0 26 8966 genus 9 237 Flavobacterium 1 772 species 0 Flavobacterium commune 1 1306519 986 1 Flavobacterium johnsoniae 0 2108 species species 879 0 Flavobacterium psychrophilum 1 96345 996 1 Flavobacterium columnare 0 1720 species Flavobacterium branchiophilum 1 55197 species 867 0 1 1763534 Flavobacterium crassostreae 0 species 548 312277 1 Flavobacterium indicum 0 species 1172 species 874 0 Flavobacterium gilvum 1 1492737 1 Dokdonia 326319 4 2133 genus 12 0 no rank 1408 0 2 2615033 Dokdonia sp. MED134 1 313590 640 species 0 0 768 species 1 983548 Dokdonia sp. 4H-3-7-5 species 713 0 Dokdonia donghaensis 326320 1 Lutibacter 1 2 358023 1731 genus 5 0 species 1726 0 Lutibacter profundi 1 1622118 genus 2445 0 50 1 Myroides 76831 5 2642485 2 0 1182 no rank 0 598 species 1583100 1 Myroides sp. A21 0 584 species 1 1458492 Myroides sp. ZB35 0 species 612 480520 1 Myroides profundi 601 species 0 Myroides odoratimimus 76832 1 4399 genus 0 35 1 Lacinutrix 291183 4 2647285 2 2950 no rank 0 1453 species 0 Lacinutrix sp. Bg11-31 2057808 1 0 species 1497 1 983544 Lacinutrix sp. 5H-3-7-4 0 1414 species 1 1486034 Lacinutrix venerupis Siansivirga 1 2 1204360 genus 1139 1 0 species 1138 0 Siansivirga zeaxanthinifaciens 762954 1 0 genus 498 1176327 1 0 no rank 498 2636237 1 1 2094025 Aureitalea sp. RR4-38 0 species 498 1 Maribacter 252356 5 genus 3714 33 0 2615042 3 0 no rank 3149 Maribacter sp. T28 1836467 1 species 1139 0 0 species 851 313603 1 Maribacter sp. HTCC2170 1 1644130 Maribacter sp. 1_2014MBL_MicDiv 0 1159 species 1 1178778 Maribacter cobaltidurans 0 532 species 1 1649495 1472 genus 0 1472 no rank 0 1 2622645 species 1472 0 Seonamhaeicola sp. S2-3 1936081 1 1116 genus 0 1518147 1 1790137 1 Wenyingzhuangia fucanilytica 0 1116 species 3 225842 Formosa 1 8 0 genus 1952 2 2644710 no rank 1944 0 0 841 species 1 1336794 Formosa sp. Hel1_33_131 0 species 1103 1336795 1 Formosa sp. Hel3_A1_48 0 1920 genus 1 2700084 1 1850246 Lutibacter sp. LPB0138 0 species 1920 1499 genus 0 261827 1 Algibacter alginicilyticus 1 1736674 1499 species 0 1211 genus 0 1 336276 0 no rank 1211 2615019 1 0 species 1211 2058135 1 Olleya sp. Bg11-27 2 1853230 family 659 0 332102 2 1 Fluviicola 0 5 659 genus 1 191579 Fluviicola taffensis 0 species 654 2 1333713 0 547 family 267986 2 1 Owenweeksia 16 0 genus 547 0 species 531 1 253245 Owenweeksia hongkongensis 3837 family 5 0 1 Blattabacteriaceae 39782 10 genus 3832 38 0 1 Blattabacterium 34098 9 species 495 0 Blattabacterium punctulatus 164514 1 6 2647581 2785 no rank 0 367806 1 Blattabacterium sp. (Blatta orientalis) 0 439 species 486 species 0 Blattabacterium sp. (Blaberus giganteus) 1 1186051 0 525 species 1316444 1 Blattabacterium sp. (Nauphoeta cinerea) 0 385 species 39768 1 Blattabacterium sp. (Mastotermes darwiniensis) 1 367488 Blattabacterium sp. (Periplaneta americana) 0 species 452 0 species 498 1 624186 Blattabacterium sp. (Blattella germanica) 0 species 514 1653831 1 Blattabacterium cuenoti Saprospiria 1 4 1937959 751 class 3 0 order 748 0 3 1936988 1937961 1 452 family 0 0 452 genus 1 2349 0 452 species 2350 1 Haliscomenobacter hydrossis 89374 2 296 family 0 4 0 genus 296 1007 2 1 Saprospira species 292 0 Saprospira grandis 1 1008 674 order 4 0 1 Bacteroidetes Order II. Incertae sedis 1100069 7 670 family 1 0 Rhodothermaceae 1 6 563843 146918 2 1 Salinibacter 1 0 genus 215 Salinibacter ruber 146919 1 214 species 0 0 3 197 genus 29548 2 1 Rhodothermus 0 194 species 1 29549 Rhodothermus marinus 0 no rank 257 1196022 1 Rhodothermaceae bacterium RA 1779382 1 257 species 0 60 768503 Cytophagia 1 0 14 class 14145 768507 59 1 Cytophagales 0 43 order 14131 0 family 542 2 1853234 genus 542 4 0 1 Persicobacter 59740 2 2664020 1 0 538 no rank 538 species 0 Persicobacter sp. JZB09 1085624 1 4 0 1316 family 3 1937968 Bernardetiaceae 1 1312 genus 0 14 Bernardetia 1 2 1937972 0 1298 species 1 999 Bernardetia litoralis family 2956 0 8 1 Cyclobacteriaceae 563798 10 Algoriphagus 1 2 246875 492 genus 0 5 1727163 1 Algoriphagus sp. M8-2 0 species 487 1389 genus 15 0 Cyclobacterium 1 3 68288 664 species 0 Cyclobacterium marinum 104 1 320787 1 Cyclobacterium amurskyense 0 species 710 10 0 genus 779 232244 2 1 Belliella 769 species 0 Belliella baltica 232259 1 genus 288 0 7 1 Echinicola 390846 2 species 281 0 Echinicola vietnamensis 390884 1 family 966 0 2 2762301 Marivirga 1 2 869806 genus 966 3 0 0 963 species 1006 1 Marivirga tractuosa family 452 0 2 1 Amoebophilaceae 1501348 5 1 Candidatus Cardinium 273135 2 162 genus 1 0 0 161 no rank 2641185 1 species 161 0 Cardinium endosymbiont of Encarsia pergandiella 249402 1 0 6 genus 288 2 281119 Candidatus Amoebophilus 1 species 282 0 Candidatus Amoebophilus asiaticus 1 281120 Cytophagaceae 1 17 89373 2942 family 10 0 1 Runella 105 2 571 genus 0 1 1 106 Runella slithyformis 0 570 species 160 genus 1 0 1 Fibrella 861914 2 0 159 no rank 2620963 1 Fibrella sp. ES10-3-2-2 1834519 1 species 159 0 0 5 genus 220 120831 2 1 Dyadobacter Dyadobacter fermentans 94254 1 215 species 0 6 107 Spirosoma 1 0 4 1089 genus species 245 0 Spirosoma aerolatum 1211326 1 1 2057025 Spirosoma sp. HA7 0 species 276 0 species 152 564064 1 Spirosoma rigui species 211 0 Spirosoma radiotolerans 1 1379870 0 201 species 1 1178516 Spirosoma montaniterrae 537 genus 14 0 Cytophaga 1 2 978 523 species 0 Cytophaga hutchinsonii 1 985 Leadbetterella 1 2 319458 genus 355 4 0 1 316068 Leadbetterella byssophila 0 species 351 1853232 15 1 Hymenobacteraceae 8 0 family 2534 genus 772 9 0 Rufibacter 1 4 1379908 no rank 436 0 2639626 2 0 species 208 1 1379909 Rufibacter sp. DG15C species 228 0 Rufibacter sp. DG31D 1 1379910 327 species 0 Rufibacter tibetensis 1 512763 8 89966 Hymenobacter 1 0 25 1362 genus 0 968 no rank 5 2615202 Hymenobacter sp. PAMC 26554 1484116 1 257 species 0 114 species 0 Hymenobacter sp. DG25A 1385663 1 1 1356852 Hymenobacter sp. APR13 0 182 species 0 272 species 1 1484118 Hymenobacter sp. PAMC 26628 0 species 143 1 1385664 Hymenobacter sp. DG25B 1411621 1 Hymenobacter sedentarius 0 species 186 183 species 0 Hymenobacter swuensis 1446467 1 0 genus 392 2 323449 1 400092 Pontibacter korlensis 0 species 213 0 species 179 388950 1 Pontibacter akesuensis family 2380 4 0 Flammeovirgaceae 1 4 200667 1 340671 no rank 1292 0 species 1292 0 Flammeovirgaceae bacterium 311 1 1257021 2 59739 Flammeovirga 1 0 2 1084 genus 0 no rank 1082 2637820 1 0 1082 species 1 1191459 Flammeovirga sp. MY04 1090 21 phylum 2059 0 class 2059 0 10 Chlorobia 1 21 191410 14 0 order 2049 191411 20 1 Chlorobiales 19 191412 Chlorobiaceae 1 17 0 family 2035 100715 1 0 genus 215 species 215 0 Chloroherpeton thalassium 1 100716 313 genus 0 24 Chlorobaculum 1 4 256319 Chlorobaculum tepidum 1097 1 76 species 0 Chlorobaculum parvum 274539 1 111 species 0 Chlorobaculum limnaeum 1 274537 102 species 0 no rank 1059 0 8 274493 genus 792 0 17 Chlorobium 1 5 1091 Chlorobium phaeovibrioides 1094 1 72 species 0 Chlorobium chlorochromatii 1 337090 213 species 0 species 360 0 Chlorobium phaeobacteroides 1096 1 130 species 0 Chlorobium limicola 1 1092 3 1099 Pelodictyon 1 0 4 genus 267 1100 1 Pelodictyon luteolum 0 82 species 0 species 181 1 34090 Pelodictyon phaeoclathratiforme 0 24 genus 431 1101 5 1 Prosthecochloris 1 1102 Prosthecochloris aestuarii 0 103 species 3 2632826 304 no rank 0 Prosthecochloris sp. GSB1 281093 1 species 104 0 0 species 88 1 1868325 Prosthecochloris sp. CIB 2401 1 1974213 Prosthecochloris sp. HL-130-GSB 0 112 species 1 Proteobacteria 1224 1989 613239 phylum 0 136 5 580370 0 271 class 1 0 order 271 580371 5 1 Mariprofundales 580372 4 1 Mariprofundaceae 2 0 family 270 Mariprofundus 1 3 377315 genus 268 0 5 Mariprofundus ferrinatatus 1 1921087 116 species 0 1921086 1 Mariprofundus aestuarium 0 147 species 553 28211 Alphaproteobacteria 1 0 175 class 244058 2 2800059 0 order 322 0 322 family 2800061 2 1 Maricaulis 74317 2 322 genus 5 0 Maricaulis maris 1 74318 species 317 0 766 54 1 Rickettsiales 0 20 18405 order 13 0 family 7434 775 27 1 Rickettsiaceae 2 2115980 Candidatus Phycorickettsia 1 0 2 genus 561 0 559 species 1 2115978 Candidatus Phycorickettsia trachydisci 0 tribe 6860 33988 24 5781 genus 522 0 Rickettsia 1 23 780 0 2025 species group 114277 17 species 40 0 Rickettsia conorii 1 781 400 species 0 Rickettsia australis 1 787 35794 1 Rickettsia slovaca 0 22 species 1 47589 Rickettsia peacockii 0 species 167 species 325 0 Rickettsia felis 1 42862 0 species 54 1 226665 Rickettsia heilongjiangensis 1 1105106 Rickettsia philipii 0 45 species 783 1 Rickettsia rickettsii 0 species 64 Rickettsia rhipicephali 33992 1 species 88 0 33991 1 Rickettsia montanensis 0 50 species 0 species 14 35792 1 Rickettsia parkeri 33989 1 Rickettsia amblyommatis 0 92 species 0 species 244 1 786 Rickettsia akari 35790 1 Rickettsia japonica 0 56 species Rickettsia africae 1 35788 35 species 0 Rickettsia massiliae 35791 1 species 63 0 1 109232 Rickettsia monacensis 0 266 species 114295 1 0 634 no rank 0 634 species 1 337479 Rickettsia endosymbiont of Bemisia tabaci species group 1429 0 114292 2 Rickettsia typhi 785 1 species 690 0 0 739 species 1 782 Rickettsia prowazekii 2 1129742 0 1171 species group Rickettsia canadensis 1 788 452 species 0 species 719 0 Rickettsia bellii 1 33990 1 69474 1079 genus 0 Orientia tsutsugamushi 784 1 1079 species 0 0 558 family 1328881 2 1 Candidatus Midichloria 411566 2 genus 558 2 0 0 species 556 1 234827 Candidatus Midichloria mitochondrii 1 1699067 1246 no rank 0 Rickettsiales bacterium Ac37b 1528098 1 species 1246 0 0 26 family 9147 942 23 1 Anaplasmataceae 1 Neorickettsia 33993 4 638 genus 9 0 Neorickettsia risticii 1 950 242 species 0 1 33994 Neorickettsia helminthoeca 0 199 species Neorickettsia sennetsu 951 1 188 species 0 8 952 0 4007 tribe 52 0 genus 4007 8 953 Wolbachia 1 7 2640676 0 3955 no rank 0 species 473 1 80849 Wolbachia endosymbiont of Brugia malayi 0 species 508 1 66084 Wolbachia sp. wRi 494 species 0 Wolbachia endosymbiont of Onchocerca ochengi 100901 1 0 370 species 1 246273 Wolbachia endosymbiont of Cimex lectularius species 490 0 Wolbachia endosymbiont of Onchocerca volvulus 1 77551 0 500 species 163164 1 Wolbachia endosymbiont of Drosophila melanogaster 0 species 1120 1 77038 Wolbachia endosymbiont of Drosophila simulans 1 Anaplasma 768 4 genus 397 0 3 Anaplasma centrale 1 769 species 97 0 1 106179 0 195 species group species 195 0 Anaplasma phagocytophilum 948 1 1 770 Anaplasma marginale 0 102 species 1 Ehrlichia 943 6 genus 4079 20 0 746 no rank 0 1 106181 0 species 746 1 391036 Ehrlichia sp. HF 106178 4 3313 species group 0 Ehrlichia canis 1 944 930 species 0 Ehrlichia muris 1 35795 species 709 0 Ehrlichia chaffeensis 1 945 species 772 0 0 902 species 779 1 Ehrlichia ruminantium order 205 0 2 1191478 2 1191479 0 family 205 Magnetococcus 1 2 162171 genus 205 0 1 Magnetococcus marinus 1124597 1 204 species 0 21953 order 62 0 1 Rhodobacterales 204455 87 1 Rhodobacteraceae 31989 86 21891 family 0 358 3 97050 Ruegeria 1 6 0 813 genus species 551 0 Ruegeria pomeroyi 89184 1 256 no rank 0 2625375 1 0 species 256 292414 1 Ruegeria sp. TM1040 463 no rank 0 58840 2 1 1904441 Rhodobacteraceae bacterium 0 225 species 1 2033435 Rhodobacteraceae bacterium QY30 0 238 species Labrenzia 1 4 478070 genus 978 51 0 0 species 295 187304 1 Labrenzia aggregata no rank 632 0 2 2648686 Labrenzia sp. CP4 1674922 1 species 267 0 0 species 365 1 2021862 Labrenzia sp. VG12 298 genus 0 1 1649279 298 species 0 Ruegeria mobilis 379347 1 genus 337 2 0 Rhodobaca 1 2 119541 Rhodobaca barguzinensis 1 441209 335 species 0 0 3 775 genus 3 60136 Sulfitobacter 1 196795 1 0 no rank 400 species 400 0 Sulfitobacter sp. AM1-D1 1917485 1 Sulfitobacter pseudonitzschiae 1 1402135 372 species 0 1 309512 0 356 genus 0 356 species 215813 1 Dinoroseobacter shibae 1579315 2 1 Halocynthiibacter 1 0 genus 361 species 360 0 Halocynthiibacter arcticus 1 1579316 Ketogulonicigenium 1 3 92944 392 genus 9 0 0 170 species 1 92947 Ketogulonicigenium robustum 0 213 species 1 92945 Ketogulonicigenium vulgare 1 2211641 0 genus 352 245188 1 Loktanella vestfoldensis 0 species 352 1 1097466 0 genus 344 1 1335048 Defluviimonas alba 0 species 344 388 genus 0 1 1 Sagittula 58842 2 no rank 387 0 1 2624628 387 species 0 Sagittula sp. P11 2009329 1 1 191028 0 genus 376 0 species 376 1 133924 Leisingera methylohalidivorans 0 genus 328 159345 1 159346 1 Roseibacterium elongatum 0 species 328 3 genus 0 Loktanella 1 245186 5 1060 Rhodobacter 1 20 0 1466 genus 0 species 615 1063 1 Rhodobacter sphaeroides 0 species 264 1061 1 Rhodobacter capsulatus 567 no rank 0 196779 2 0 272 species 1 1850250 Rhodobacter sp. LPB0142 Rhodobacter sp. CZR27 2033869 1 295 species 0 Celeribacter 1 5 875170 1263 genus 0 12 1397108 1 Celeribacter marinus 0 275 species 0 367 species 1 1411902 Celeribacter manganoxidans 0 species 342 1208324 1 Celeribacter indicus Celeribacter ethanolicus 1758178 1 267 species 0 genus 717 0 263377 2 363 species 0 Thiobacimonas profunda 1229727 1 no rank 354 0 2640570 1 1 1792508 Yangia sp. CCB-MM3 0 354 species 265 9 1 Paracoccus 0 44 2271 genus 34004 1 Paracoccus aminovorans 0 284 species 305 species 0 Paracoccus zhejiangensis 1 1077935 0 354 species 147645 1 Paracoccus yeei 257 species 0 Paracoccus aminophilus 1 34003 294 no rank 0 1 246570 species 294 0 Paracoccus sp. BM15 1 1529068 species 260 0 Paracoccus sp. CBA4604 1 2065379 0 202 species 1 1945662 Paracoccus contaminans Paracoccus denitrificans 266 1 271 species 0 Antarctobacter 1 2 74032 391 genus 2 0 1 74033 Antarctobacter heliothermus 0 species 389 1 0 genus 244 1759396 2 1 Marivivens 0 no rank 243 1 2622455 1 1920883 Marivivens sp. JLT3646 0 243 species Roseobacter 1 3 2433 genus 721 7 0 2434 1 Roseobacter denitrificans 0 species 365 0 species 349 1 42443 Roseobacter litoralis 0 27 genus 2502 5 302485 Phaeobacter 1 species 247 0 Phaeobacter porticola 1 1844006 1 1580596 Phaeobacter piscinae 0 574 species 221822 1 Phaeobacter inhibens 0 983 species 0 671 species 1 60890 Phaeobacter gallaeciensis 0 genus 266 1 285107 species 266 0 Thioclava nitratireducens 1 1915078 299261 2 1 Tateyamaria 0 3 310 genus Tateyamaria omphalii 299262 1 307 species 0 genus 941 0 11 Octadecabacter 1 4 53945 Octadecabacter temperatus 1458307 1 species 260 0 species 340 0 Octadecabacter antarcticus 1 1217908 0 330 species 1 53946 Octadecabacter arcticus 3 0 genus 337 74030 2 1 Roseovarius 334 species 0 Roseovarius mucosus 215743 1 1 Pannonibacter 227873 2 292 genus 0 2 0 species 290 1 121719 Pannonibacter phragmitetus 1 Confluentimicrobium 1609958 2 genus 385 4 0 1 2643318 0 no rank 381 species 381 0 Confluentimicrobium sp. EMB200-NS6 1609966 1 0 3 422 genus 360528 2 1 Pelagibaca 0 419 species 1 1250539 Pelagibaca abyssi 1284657 1 505 genus 0 505 species 0 Planktomarina temperata 1 1284658 0 13 1113 genus 4 34008 Rhodovulum 1 0 498 species 1 35806 Rhodovulum sulfidophilum 2 2631432 602 no rank 0 1 1564506 Rhodovulum sp. P5 0 293 species species 309 0 Rhodovulum sp. MB263 308754 1 0 2 507 genus 367771 2 1 Marinovum 505 species 0 Marinovum algicola 1 42444 3 0 316 genus 2 188905 Jannaschia 1 1 2645469 0 313 no rank Jannaschia sp. CCS1 1 290400 species 313 0 2551 no rank 0 8 82117 2 991903 Polymorphum 1 0 23 genus 314 291 species 0 Polymorphum gilvum 1 991904 0 7 genus 283 1632780 2 1 Phreatobacter 1868589 1 Phreatobacter sp. S-12 0 276 species 0 clade 1660 62654 2 0 7 1660 genus 2 767891 Candidatus Puniceispirillum 1 0 1653 species 1 767892 Candidatus Puniceispirillum marinum 1 Micavibrio 213485 2 genus 294 6 0 Micavibrio aeruginosavorus 349221 1 288 species 0 8 1921002 Holosporales 1 0 5 1614 order family 601 0 2 Caedimonadaceae 1 3 2100208 genus 599 0 8 1 Candidatus Nucleicultrix 1509243 2 species 591 0 Candidatus Nucleicultrix amoebiphila 1 1509244 567 family 0 1 44746 204454 1 no rank 567 0 567 species 0 endosymbiont of Acanthamoeba sp. UWC8 1 86106 1777752 3 1 Candidatus Paracaedibacteraceae 2 0 family 441 2 1521255 Candidatus Paracaedibacter 1 5 0 439 genus Candidatus Paracaedibacter acanthamoebae 1 91604 species 434 0 0 19 121469 order 54526 9 1 Pelagibacterales 1 Pelagibacteraceae 1655514 6 113393 family 0 54 2 1655516 62355 no rank 0 0 species 5348 744985 1 alpha proteobacterium HIMB59 species 57007 0 alpha proteobacterium HIMB5 859653 1 50984 genus 0 18 1 Candidatus Pelagibacter 198251 3 0 43520 species 1 198252 Candidatus Pelagibacter ubique 1 2647897 0 7446 no rank Candidatus Pelagibacter sp. IMCC9063 1 1002672 species 7446 0 2045213 2 1 Candidatus Fonsibacter 0 19 8057 genus 0 8038 species 1 1925548 Candidatus Fonsibacter ubiquis 1 Rhodospirillales 204441 62 12778 order 0 63 41295 30 1 Rhodospirillaceae 0 118 family 8156 genus 215 0 9 Pararhodospirillum 1 2 1612157 species 206 0 Pararhodospirillum photometricum 1084 1 0 75 genus 1391 5 13134 Magnetospirillum 1 Magnetospirillum gryphiswaldense 1 55518 species 372 0 2617991 2 0 no rank 632 Magnetospirillum sp. ME-1 1 1639348 344 species 0 288 species 0 Magnetospirillum sp. XM-1 1 1663591 Magnetospirillum magneticum 84159 1 312 species 0 1543704 2 1 Niveispirillum 9 0 genus 290 Niveispirillum cyanobacteriorum 1612173 1 281 species 0 Rhodospirillum 1 3 1081 635 genus 10 0 1 1085 Rhodospirillum rubrum 0 species 276 34018 1 Rhodospirillum centenum 0 species 349 1 Azospirillum 191 5 2024 genus 65 0 1226968 1 Azospirillum humicireducens 0 species 230 1 193 Azospirillum lipoferum 0 717 species Azospirillum thiophilum 528244 1 species 391 0 0 621 species 192 1 Azospirillum brasilense 1 0 genus 1380 1263978 2 1 Candidatus Endolissoclinum 1379 species 0 Candidatus Endolissoclinum faulkneri 1263979 1 0 1 216 genus 1804663 2 1 Haematospirillum 1549855 1 Haematospirillum jordaniae 0 215 species Tistrella 1 2 171436 416 genus 9 0 171437 1 Tistrella mobilis 0 407 species genus 309 5 0 Magnetospira 1 2 1182780 2685734 1 0 304 no rank 1 1288970 Magnetospira sp. QH-2 0 species 304 Thalassospira 1 3 168934 genus 823 13 0 0 399 species 220697 1 Thalassospira xiamenensis Thalassospira sp. CSC3H3 2048283 1 411 species 0 339 genus 0 1543705 1 28077 1 Nitrospirillum amazonense 0 339 species family 4559 38 0 Acetobacteraceae 1 31 433 85 genus 0 1 1602345 1510841 1 Parasaccharibacter apium 0 species 85 14 0 573 genus 3 125216 Roseomonas 1 0 species 255 1 257708 Roseomonas gilardii 2617492 1 0 304 no rank 0 304 species 2018065 1 Roseomonas sp. FDAARGOS_362 1434011 5 1 Komagataeibacter 14 0 720 genus Komagataeibacter medellinensis 1177712 1 117 species 0 266 species 0 Komagataeibacter xylinus 28448 1 0 116 species 1 33995 Komagataeibacter europaeus Komagataeibacter nataicola 265960 1 207 species 0 1 Asaia 91914 2 genus 98 0 1 Asaia bogorensis 91915 1 97 species 0 153497 1 0 143 genus Kozakia baliensis 153496 1 143 species 0 0 1 100 genus 320496 2 1 Neoasaia 0 99 species 320497 1 Neoasaia chiangmaiensis 0 21 genus 1608 434 8 1 Acetobacter 1 104102 Acetobacter tropicalis 0 species 191 144 species 0 Acetobacter senegalensis 446692 1 0 species 138 1 65959 Acetobacter pomorum 1 438 Acetobacter pasteurianus 0 682 species 0 species 173 1633874 1 Acetobacter oryzifermentans 151157 1 0 subgenus 123 Acetobacter aceti 1 435 123 species 0 Acetobacter persici 1 1076596 136 species 0 genus 169 0 89583 1 169 species 0 Gluconacetobacter diazotrophicus 33996 1 441 3 1 Gluconobacter 0 8 318 genus 0 species 217 442 1 Gluconobacter oxydans Gluconobacter albidus 318683 1 93 species 0 genus 450 0 18 1 Acidiphilium 522 3 0 222 species 62140 1 Acidiphilium multivorum 0 species 210 1 524 Acidiphilium cryptum 1 364409 0 257 genus 257 species 0 Granulibacter bethesdensis 364410 1 1 Rhizobiales 356 209 order 47024 296 0 1 Beijerinckiaceae 45404 5 417 family 3 0 532 2 1 Beijerinckia 0 4 genus 253 1 533 Beijerinckia indica 0 249 species 2 120652 Methylocella 1 0 4 genus 161 1 199596 Methylocella silvestris 0 species 157 52 82115 Rhizobiaceae 1 79 0 12688 family 227290 33 0 no rank 7003 379 24 1 Rhizobium 0 265 4914 genus Rhizobium leguminosarum 384 1 species 1136 0 0 430 species 396 1 Rhizobium phaseoli 18 2613769 no rank 2040 0 species 149 0 Rhizobium sp. Kim5 1 2020311 species 162 0 Rhizobium sp. S41 1869170 1 Rhizobium sp. N871 1703968 1 1 species 0 1 1703966 Rhizobium sp. N731 0 34 species 0 130 species 1 1914541 Rhizobium sp. Y9 Rhizobium sp. NXC14 1 1981173 species 123 0 species 190 0 Rhizobium sp. NXC24 2048897 1 0 species 224 2028343 1 Rhizobium sp. 10195 0 species 133 1 2020312 Rhizobium sp. CIAT894 155 species 0 Rhizobium sp. NT-26 1125847 1 0 34 species 1 1703961 Rhizobium sp. N1314 40 species 0 Rhizobium sp. TAL182 1 2020313 424182 1 Rhizobium sp. IRBG74 0 species 133 150 species 0 Rhizobium sp. N324 1703969 1 1301032 1 Rhizobium sp. IE4771 0 158 species Rhizobium sp. N1341 1703962 1 species 2 0 species 219 0 Rhizobium sp. ACO-34A 1 1571470 1703960 1 Rhizobium sp. N113 0 3 species 589 species 0 Rhizobium etli 1 29449 Rhizobium tropici 398 1 173 species 0 1 56730 Rhizobium gallicum 0 281 species genus 1783 0 31 1 Agrobacterium 357 7 Agrobacterium rhizogenes 359 1 194 species 0 Agrobacterium vitis 1 373 196 species 0 1183400 2 977 species group 0 1 1176649 Agrobacterium fabrum 0 177 species 358 1 Agrobacterium tumefaciens 0 species 800 2632611 2 0 no rank 385 0 159 species 861208 1 Agrobacterium sp. H13-3 0 species 226 1842536 1 Agrobacterium sp. RAC06 Neorhizobium 1 2 1525371 306 genus 4 0 399 1 Neorhizobium galegae 0 species 302 4 0 332 genus 323620 2 1 Shinella 1 2643062 328 no rank 0 0 328 species 1 879274 Shinella sp. HZN7 genus 2850 0 62 1 Liberibacter 34019 6 0 528 species 556287 1 Candidatus Liberibacter solanacearum 1 34020 Candidatus Liberibacter africanus 0 491 species 1 1273132 Liberibacter crescens 0 699 species Candidatus Liberibacter asiaticus 34021 1 451 species 0 309868 1 Candidatus Liberibacter americanus 0 619 species 0 no rank 2424 227292 10 1 Ensifer 106591 3 449 genus 2 0 0 266 species 1 106592 Ensifer adhaerens 181 species 0 Ensifer sojae 716925 1 Sinorhizobium 1 7 28105 genus 1975 47 0 Sinorhizobium meliloti 1 382 species 476 0 453 no rank 0 2 2613772 Sinorhizobium sp. CCBAU 05631 794846 1 231 species 0 0 species 222 1842534 1 Sinorhizobium sp. RAC02 species 227 0 Sinorhizobium americanum 194963 1 546 species group 0 663276 1 Sinorhizobium fredii 380 1 546 species 0 0 226 species 110321 1 Sinorhizobium medicae 1 Methylocystaceae 31993 6 family 536 0 3 425 2 1 Methylosinus 0 1 genus 196 1 426 Methylosinus trichosporium 0 species 195 11 0 337 genus 133 3 1 Methylocystis 0 176 no rank 1 2625913 species 176 0 Methylocystis sp. SC2 187303 1 0 150 species 655015 1 Methylocystis bryophila 119043 3 1 Rhodobiaceae 0 2 family 323 2 256616 Parvibaculum 1 6 0 321 genus 315 species 0 Parvibaculum lavamentivorans 256618 1 2536 family 28 0 1 Hyphomicrobiaceae 45401 19 228 genus 0 5 Filomicrobium 1 2 119044 223 species 0 Candidatus Filomicrobium marinum 1608628 1 Pelagibacterium 1 2 1082930 179 genus 0 2 531813 1 Pelagibacterium halotolerans 0 177 species Rhodomicrobium 1 2 1068 205 genus 1 0 204 species 0 Rhodomicrobium vannielii 1 1069 0 25 genus 769 46913 4 1 Devosia 0 no rank 744 3 196773 1 2083786 Devosia sp. I507 0 species 203 1 1736675 Devosia sp. A16 0 species 283 258 species 0 Devosia sp. H5989 1643450 1 647 genus 22 0 Hyphomicrobium 1 4 81 no rank 240 0 1 2619925 Hyphomicrobium sp. MC1 1 717785 species 240 0 0 species 155 1 1427356 Hyphomicrobium nitrativorans 0 species 230 53399 1 Hyphomicrobium denitrificans 2 29407 Rhodoplanes 1 0 9 245 genus 2619116 1 0 236 no rank species 236 0 Rhodoplanes sp. Z2-YC6860 1 674703 3 0 235 genus 59282 2 1 Blastochloris Blastochloris viridis 1079 1 232 species 0 20 118882 Brucellaceae 1 11 0 1736 family Ochrobactrum 1 5 528 1042 genus 29 0 Ochrobactrum sp. A44 271865 1 species 233 0 1 419475 Ochrobactrum pseudogrignonense 0 species 278 Ochrobactrum pituitosum 1 571256 304 species 0 species 198 0 Ochrobactrum anthropi 1 529 1 Brucella 234 14 683 genus 0 223 0 species 47 1 981386 Brucella vulpis Brucella suis 1 29461 species 50 0 235 1 Brucella abortus 0 35 species Brucella canis 36855 1 species 34 0 120577 1 Brucella ceti 0 species 34 11 species 0 Brucella ovis 1 236 Brucella microti 1 444163 13 species 0 23 species 0 Brucella melitensis 29459 1 0 no rank 174 4 2632610 Brucella sp. 2002734562 1 1891098 species 18 0 Brucella sp. 09RB8471 1 1149952 species 55 0 Brucella sp. 09RB8910 1844051 1 species 60 0 0 species 41 1885919 1 Brucella sp. 141012304 species 39 0 Brucella pinnipedialis 120576 1 Bradyrhizobiaceae 1 26 41294 family 6346 0 53 0 126 3085 genus 11 374 Bradyrhizobium 1 1274631 1 Bradyrhizobium icense 0 species 261 375 1 Bradyrhizobium japonicum 0 species 425 species 307 0 Bradyrhizobium oligotrophicum 44255 1 no rank 1537 0 6 2631580 0 233 species 1223566 1 Bradyrhizobium sp. CCGE-LA001 286 species 0 Bradyrhizobium sp. ORS 278 114615 1 267 species 0 Bradyrhizobium sp. BTAi1 288000 1 Bradyrhizobium sp. 376 1 species 260 0 0 species 246 1 115808 Bradyrhizobium sp. ORS 285 2057741 1 Bradyrhizobium sp. SK17 0 species 245 429 species 0 Bradyrhizobium diazoefficiens 1355477 1 85413 5 1 Bosea 0 50 genus 1153 1526658 1 Bosea vaviloviae 0 species 323 780 no rank 0 3 2653178 Bosea sp. AS-1 2015316 1 species 233 0 0 species 323 1842539 1 Bosea sp. RAC05 0 species 224 1792307 1 Bosea sp. PAMC 26642 genus 1339 27 0 Rhodopseudomonas 1 2 1073 1312 species 0 Rhodopseudomonas palustris 1076 1 1 Nitrobacter 911 3 genus 340 0 4 Nitrobacter winogradskyi 1 913 166 species 0 0 species 170 1 912 Nitrobacter hamburgensis 2 1649510 Variibacter 1 0 3 genus 186 183 species 0 Variibacter gotjawalensis 1333996 1 0 4 genus 190 2 40136 Oligotropha 1 Oligotropha carboxidovorans 1 40137 186 species 0 27 0 3830 family 69277 20 1 Phyllobacteriaceae Phyllobacterium 1 2 28100 genus 217 1 0 1867719 1 Phyllobacterium zundukense 0 216 species Hoeflea 1 2 274591 genus 323 0 3 no rank 320 0 2614931 1 Hoeflea sp. IMCC20628 1 1620421 320 species 0 9 68287 Mesorhizobium 1 0 83 2529 genus 325217 1 0 no rank 314 1 278153 Mesorhizobium sp. WSM1497 0 314 species 0 278 species 1 71433 Mesorhizobium amorphae 0 species 286 2066070 1 Mesorhizobium japonicum species 255 0 Mesorhizobium australicum 1 536018 Mesorhizobium ciceri 39645 1 species 423 0 Mesorhizobium sp. B7 1 1670800 273 species 0 1 381 Mesorhizobium loti 0 330 species species 287 0 Mesorhizobium opportunistum 593909 1 genus 295 0 4 Aminobacter 1 2 31988 83263 1 Aminobacter aminovorans 0 species 291 0 7 genus 187 2 449972 Chelativorans 1 1 2643807 0 180 no rank 0 180 species 266779 1 Chelativorans sp. BNC1 0 6 genus 252 2 245876 Nitratireductor 1 472175 1 Nitratireductor basaltis 0 246 species 4 2036754 Chelatococcaceae 1 0 3 family 569 28209 3 1 Chelatococcus 0 24 genus 566 284 no rank 0 1 2638111 1702325 1 Chelatococcus sp. CO-6 0 284 species Chelatococcus daeguensis 1 444444 258 species 0 family 828 0 22 1 Xanthobacteraceae 335928 7 genus 233 9 0 Azorhizobium 1 2 6 species 224 0 Azorhizobium caulinodans 7 1 0 6 genus 301 2 279 Xanthobacter 1 Xanthobacter autotrophicus 1 280 species 295 0 2 152053 Starkeya 1 17 0 genus 272 0 255 species 921 1 Starkeya novella 255475 7 1 Aurantimonadaceae 0 6 family 1042 1 Martelella 293088 4 genus 784 0 19 Martelella mediterranea 293089 1 species 289 0 2629616 1 0 no rank 246 1 686597 Martelella sp. AD-3 0 246 species 1486262 1 Martelella endophytica 0 230 species genus 252 10 0 1 Aureimonas 414371 2 2615206 1 0 242 no rank species 242 0 Aureimonas sp. AU20 1349819 1 119042 6 no rank 721 0 Hartmannibacter 1 2 1572860 genus 295 6 0 species 289 0 Hartmannibacter diazotrophicus 1 1482074 2 1734920 Pseudorhodoplanes 1 0 6 235 genus Pseudorhodoplanes sinuspersici 1 1235591 species 229 0 genus 191 9 0 1 Methyloceanibacter 1484898 2 1384459 1 Methyloceanibacter caenitepidi 0 species 182 0 15 family 3551 119045 15 1 Methylobacteriaceae 2282523 3 0 1314 genus Methylobacterium zatmanii 1 29429 species 191 0 Methylobacterium extorquens 1 408 779 species 0 344 species 0 Methylobacterium populi 1 223967 186650 2 1 Microvirga 0 6 genus 229 Microvirga ossetica 1882682 1 223 species 0 Methylobacterium 1 9 407 genus 1993 0 115 754 no rank 0 3 2615210 0 species 186 1 925818 Methylobacterium sp. AMS5 Methylobacterium sp. 4-46 1 426117 352 species 0 0 216 species 1479019 1 Methylobacterium sp. C1 172 species 0 Methylobacterium phyllosphaerae 1 418223 270351 1 Methylobacterium aquaticum 0 249 species Methylobacterium nodulans 1 114616 297 species 0 31998 1 Methylobacterium radiotolerans 0 species 224 species 182 0 Methylobacterium oryzae 334852 1 12 0 family 11605 18 772 Bartonellaceae 1 17 773 Bartonella 1 0 248 11593 genus 0 species 768 1 774 Bartonella bacilliformis 1686310 1 Bartonella apis 0 526 species 2645622 6 0 no rank 5066 1 1933912 Bartonella sp. Raccoon60 0 species 833 1 1933904 Bartonella sp. WD16.2 0 species 868 0 848 species 1933906 1 Bartonella sp. JB15 0 species 848 1 1933907 Bartonella sp. JB63 835 species 0 Bartonella sp. A1379B 1933910 1 Bartonella sp. 1-1C 1 515256 834 species 0 85701 1 Bartonella tribocorum 0 639 species 0 653 species 1 33047 Bartonella vinsonii 1 56426 Bartonella clarridgeiae 0 780 species 388640 1 Bartonella australis 0 436 species 0 556 species 1 803 Bartonella quintana species 627 0 Bartonella henselae 38323 1 33045 1 Bartonella grahamii 0 630 species 1318743 1 Bartonella ancashensis 0 664 species 1 Caulobacterales 204458 20 order 3115 0 20 family 3095 72 0 Caulobacteraceae 1 19 76892 4 0 173 genus 76890 2 1 Asticcacaulis 78587 1 Asticcacaulis excentricus 0 169 species Caulobacter 1 6 75 1351 genus 0 31 0 221 species 1 88688 Caulobacter segnis 0 species 360 155892 1 Caulobacter vibrioides 0 species 228 69395 1 Caulobacter henricii 1 2648921 no rank 264 0 Caulobacter sp. K31 366602 1 264 species 0 1 69666 Caulobacter mirabilis 0 species 247 258 genus 3 0 Phenylobacterium 1 2 20 1 284016 Phenylobacterium zucineum 0 species 255 Brevundimonas 1 7 41275 1058 genus 44 0 Brevundimonas subvibrioides 74313 1 species 183 0 species 166 0 Brevundimonas naejangsanensis 1 588932 41276 1 Brevundimonas vesicularis 0 species 135 530 no rank 0 2622653 3 species 240 0 Brevundimonas sp. LM2 1938605 1 1 1532555 Brevundimonas sp. DS20 0 145 species Brevundimonas sp. GW460-12-10-14-LB2 1 1827469 species 145 0 no rank 183 0 81440 1 Caulobacteraceae bacterium OTSz_A_272 1759059 1 183 species 0 1 Parvularculales 255473 4 286 order 0 1 Parvularculaceae 1 3 255474 family 285 4 0 16 0 genus 281 208215 2 1 Parvularcula 265 species 0 Parvularcula bermudensis 1 208216 6 2800060 0 order 1429 Hyphomonadaceae 1 6 69657 1429 family 0 15 3 85 Hyphomonas 1 0 21 760 genus no rank 536 0 1 2630699 0 536 species 1 1906738 Hyphomonas sp. Mor2 Hyphomonas neptunium 81032 1 203 species 0 Hirschia 1 2 2723 654 genus 0 16 2724 1 Hirschia baltica 0 species 638 62 0 12732 order 81 204457 Sphingomonadales 1 9722 family 0 122 1 Sphingomonadaceae 41297 58 1 Rhizorhabdus 1649486 2 174 genus 0 3 171 species 0 Rhizorhabdus dicambivorans 1 1850238 0 19 680 genus 5 165696 Novosphingobium 1 2644732 1 0 no rank 140 Novosphingobium sp. PP1Y 702113 1 140 species 0 species 197 0 Novosphingobium resinovorum 1 158500 1 205844 Novosphingobium pentaromativorans 0 species 168 1 48935 Novosphingobium aromaticivorans 0 species 156 46 0 1854 genus 10 165697 Sphingopyxis 1 0 943 no rank 4 2614943 Sphingopyxis sp. MG 1 1866325 184 species 0 0 419 species 1913578 1 Sphingopyxis sp. LPB0140 0 species 185 1 1357916 Sphingopyxis sp. QXT-31 1 292913 Sphingopyxis sp. 113P3 0 species 155 33050 1 Sphingopyxis macrogoltabida 0 species 302 species 145 0 Sphingopyxis granuli 267128 1 115 species 0 Sphingopyxis alaskensis 117207 1 species 142 0 Sphingopyxis fribergensis 1515612 1 0 161 species 33052 1 Sphingopyxis terrae 165695 15 1 Sphingobium 0 99 genus 2005 0 species 117 1 46429 Sphingobium chlorophenolicum Sphingobium baderi 1332080 1 114 species 0 0 119 species 332055 1 Sphingobium indicum 204 species 0 Sphingobium yanoikuyae 13690 1 815 no rank 0 2611147 6 Sphingobium sp. YBL2 1 484429 species 144 0 0 species 119 1855519 1 Sphingobium sp. EP60837 species 146 0 Sphingobium sp. MI1205 1 407020 1 1315974 Sphingobium sp. TKS 0 species 144 species 138 0 Sphingobium sp. SYK-6 627192 1 1 1843368 Sphingobium sp. RAC03 0 124 species 0 species 151 1673076 1 Sphingobium hydrophobicum 116 species 0 Sphingobium cloacae 1 120107 76947 1 Sphingobium herbicidovorans 0 129 species 1 332056 Sphingobium japonicum 0 141 species 2709685 1 0 175 genus Sphingorhabdus flavimaris 266812 1 species 175 0 2 72173 Citromicrobium 1 5 0 139 genus 134 no rank 0 2630544 1 1 1634516 Citromicrobium sp. JL477 0 species 134 0 76 genus 3296 15 13687 Sphingomonas 1 species 171 0 Sphingomonas taxi 1 1549858 Sphingomonas panacis 1560345 1 species 190 0 species 553 274 0 1 Sphingomonas wittichii 160791 2 1 1283312 Sphingomonas sp. DC-6 0 279 strain 252 species 0 Sphingomonas sanxanigenens 397260 1 0 no rank 1528 196159 6 Sphingomonas sp. Cra20 1 1327635 164 species 0 0 species 199 745310 1 Sphingomonas sp. MM-1 species 144 0 Sphingomonas sp. NIC1 1961362 1 704 species 0 Sphingomonas sp. LK11 1390395 1 Sphingomonas sp. KC8 1030157 1 177 species 0 0 species 140 1938607 1 Sphingomonas sp. LM7 Sphingomonas hengshuiensis 1 1609977 198 species 0 species 177 0 Sphingomonas koreensis 1 93064 0 151 species 152682 1 Sphingomonas melonis 1 Sphingorhabdus 1434046 3 genus 425 0 14 0 411 no rank 2 2614947 1 1806885 Sphingorhabdus sp. M41 0 194 species Sphingorhabdus sp. YGSMI21 1 2077182 217 species 0 0 182 genus 150203 1 no rank 182 0 1 2626550 182 species 0 Blastomonas sp. RAC04 1842535 1 2 541 Zymomonas 1 3 0 genus 480 542 1 Zymomonas mobilis 0 species 477 genus 190 0 2685927 1 1921510 1 Sphingomonas sp. JJ-A5 0 species 190 50 0 2948 family 22 335929 Erythrobacteraceae 1 2 2800681 genus 539 0 Erythrobacter gangjinensis 502682 1 species 242 0 0 species 297 1648404 1 Erythrobacter atlanticus Croceicoccus 1 3 1295327 259 genus 0 9 0 142 species 1 450378 Croceicoccus marinus Croceicoccus naphthovorans 1348774 1 108 species 0 39 0 421 genus 361177 4 1 Altererythrobacter Altererythrobacter ishigakiensis 1 476157 species 133 0 species 133 0 Altererythrobacter epoxidivorans 1 361183 1 1267766 Altererythrobacter atlanticus 0 116 species 1 2800685 genus 105 0 Altererythrobacter marensis 1 543877 105 species 0 2800686 2 0 genus 278 0 137 species 1 692370 Altererythrobacter dongtanensis Altererythrobacter mangrovi 1982042 1 species 141 0 1855416 2 260 genus 0 0 species 148 192812 1 Erythrobacter flavus 0 112 species 266951 1 Erythrobacter seohaensis 0 no rank 845 6 2800788 Erythrobacter 1 3 1041 genus 487 0 46 129 species 0 Porphyrobacter neustonensis 1 1112 39960 1 Erythrobacter litoralis 0 312 species Porphyrobacter 1 3 1111 genus 358 0 18 2 2683265 0 no rank 340 Porphyrobacter sp. LM 6 1 1896196 161 species 0 0 179 species 2023229 1 Porphyrobacter HT-58-2 genus 191 0 1 2800682 1 645517 Altererythrobacter namhicola 0 species 191 class 255493 402 0 Gammaproteobacteria 1 886 1236 17 0 33394 order 43 135623 Vibrionales 1 Vibrionaceae 1 42 641 family 33377 56 0 511678 4 1 Aliivibrio 0 7 genus 1542 615 species 0 Aliivibrio wodanis 1 80852 0 species 377 40269 1 Aliivibrio salmonicida 1 668 Aliivibrio fischeri 0 species 543 222 0 25002 genus 662 30 1 Vibrio 0 species 1408 1 672 Vibrio vulnificus 355 species 0 Vibrio mimicus 674 1 553239 1 Vibrio breoganii 0 225 species Vibrio coralliilyticus 190893 1 786 species 0 29494 1 Vibrio furnissii 0 species 301 0 species 518 45658 1 Vibrio scophthalmi 0 571 species 55601 1 Vibrio anguillarum Vibrio qinghaiensis 2025808 1 species 229 0 1534743 1 Vibrio hyugaensis 0 species 467 0 376 no rank 2 2614977 Vibrio sp. EJY3 1 1116375 species 224 0 152 species 0 Vibrio sp. 2521-89 2014742 1 566 species 0 Vibrio nigripulchritudo 28173 1 Vibrio tasmaniensis 1 212663 586 species 0 species 314 0 Vibrio gazogenes 1 687 1 676 Vibrio fluvialis 0 284 species 0 species 338 1 1435069 Vibrio tritonius Vibrio tapetis 52443 1 species 459 0 472 species 0 Vibrio cholerae 1 666 16069 species group 0 717610 10 2315253 2 0 species subgroup 761 258 species 0 Vibrio antiquarius 1 150340 0 503 species 1 50719 Vibrio diabolicus 1031 species 0 Vibrio parahaemolyticus 1 670 species 1379 0 Vibrio alginolyticus 663 1 0 1207 species 696485 1 Vibrio owensii species 3305 0 Vibrio rotiferianus 190895 1 0 2238 species 1 669 Vibrio harveyi 680 1 Vibrio campbellii 0 5159 species 0 522 species 691 1 Vibrio natriegens Vibrio jasicida 1 766224 species 467 0 0 456 species group 1891919 1 1 29498 Vibrio tubiashii 0 456 species Photobacterium 1 4 657 4279 genus 3 0 Photobacterium damselae 1 38293 3619 species 0 Photobacterium gaetbulicola 1295392 1 species 193 0 1 74109 Photobacterium profundum 0 species 464 2290 genus 5 0 Paraphotobacterium 1 2 2042066 0 2285 species 1755811 1 Paraphotobacterium marinum 0 genus 208 1 246861 Grimontia hollisae 673 1 208 species 0 Oceanospirillales 1 70 135619 order 20010 40 0 1 Saccharospirillaceae 255527 4 family 586 3 0 1445504 1 333 genus 0 333 species 0 Gynuella sunshinyii 1 1445505 genus 250 2 0 1 Reinekea 230494 2 1 1336806 Reinekea forsetii 0 248 species 9 224372 Alcanivoracaceae 1 0 18 9806 family 2025617 2 1 Ketobacter 17 0 317 genus Ketobacter alkanivorans 1917421 1 species 300 0 0 44 9471 genus 59753 6 1 Alcanivorax 3776 no rank 0 1 2638842 0 species 3776 1113728 1 Alcanivorax sp. NBRC 101098 Alcanivorax xenomutans 1 1094342 640 species 0 3927 species 0 Alcanivorax borkumensis 1 59754 Alcanivorax dieselolei 285091 1 584 species 0 1306787 1 Alcanivorax pacificus 0 species 500 16 0 family 2684 135620 13 1 Oceanospirillaceae 8 0 genus 1228 28253 4 1 Marinomonas Marinomonas posidonica 936476 1 species 322 0 1 196814 0 527 no rank 0 species 527 400668 1 Marinomonas sp. MWYL1 Marinomonas mediterranea 1 119864 species 371 0 1 0 407 genus 188907 2 1 Oleispira 406 species 0 Oleispira antarctica 1 188908 1537406 2 1 Bacterioplanes 9 0 genus 300 0 291 species 1249553 1 Bacterioplanes sanyensis 389 genus 0 2 1 Marinobacterium 48075 2 species 387 0 Marinobacterium aestuarii 1821621 1 Thalassolituus 1 2 187492 344 genus 0 8 0 species 336 1 187493 Thalassolituus oleivorans 3 191033 Oleiphilaceae 1 8 0 family 325 1 Oleiphilus 141450 2 genus 317 5 0 0 312 species 141451 1 Oleiphilus messinensis 249 family 0 224379 2 2 158481 Hahella 1 9 0 249 genus 158327 1 Hahella chejuensis 0 species 240 32 28256 Halomonadaceae 1 40 0 family 5166 0 5 genus 180 376488 2 1 Halotalea Halotalea alkalilenta 376489 1 species 175 0 no rank 1022 0 6 114403 0 2 genus 440 235572 2 1 Candidatus Portiera Candidatus Portiera aleyrodidarum 1 91844 438 species 0 394 genus 0 1 Candidatus Evansia 1 2 1495768 1495769 1 Candidatus Evansia muelleri 0 species 393 0 1 genus 188 2 114185 Candidatus Carsonella 1 187 species 0 Candidatus Carsonella ruddii 1 114186 1 Chromohalobacter 42054 2 199 genus 5 0 1 158080 Chromohalobacter salexigens 0 194 species genus 238 0 1 204286 Cobetia marina 1 28258 species 238 0 1 Salinicola 404432 2 217 genus 2 0 0 species 215 1771309 1 Salinicola tamaricis 2899 genus 61 0 Halomonas 1 15 2745 213554 1 Halomonas campaniensis 0 173 species 185 species 0 Halomonas hydrothermalis 1 115561 species 258 0 Halomonas huangheensis 1178482 1 Halomonas aestuarii 1 1897729 species 197 0 species 258 0 Halomonas beimenensis 1 475662 1622 no rank 0 8 2609666 0 207 species 1 1883416 Halomonas sp. 1513 Halomonas sp. GFAJ-1 1 1118153 186 species 0 2136172 1 Halomonas sp. SF2003 0 260 species Halomonas sp. 'Soap Lake #6' 1 1949203 197 species 0 1610576 1 Halomonas sp. R57-5 0 species 176 Halomonas sp. 'Soap Lake #7' 1962264 1 197 species 0 Halomonas sp. KO116 1504981 1 species 201 0 198 species 0 Halomonas sp. GT 1 1971364 507626 1 Halomonas chromatireducens 0 145 species 10 0 371 genus 3 504090 Kushneria 1 0 species 205 1 698828 Kushneria konosiri Kushneria marisflavi 157779 1 species 156 0 1154 family 0 8 1 Kangiellaceae 1920240 6 1146 genus 0 33 1 Kangiella 261963 5 272 species 0 Kangiella sediminilitoris 1144748 1 0 species 256 261964 1 Kangiella koreensis Kangiella profundi 1 1561924 275 species 0 0 310 species 914150 1 Kangiella geojedonensis 104 135622 Alteromonadales 1 63 0 34929 order 267893 6 1 Idiomarinaceae 5 0 760 family 1 Idiomarina 135575 5 755 genus 0 16 Idiomarina loihiensis 135577 1 197 species 0 0 species 192 1096243 1 Idiomarina piscisalsi 2614829 2 350 no rank 0 Idiomarina sp. X4 2055892 1 187 species 0 Idiomarina sp. OT37-5b 1 2100422 species 163 0 8 0 11062 family 25 267888 Pseudoalteromonadaceae 1 11054 genus 184 0 Pseudoalteromonas 1 24 53246 Pseudoalteromonas issachenkonii 152297 1 species 357 0 1 247523 Pseudoalteromonas aliena 0 species 501 228 1 Pseudoalteromonas haloplanktis 0 species 338 0 species 423 1 43657 Pseudoalteromonas luteoviolacea species 363 0 Pseudoalteromonas nigrifaciens 1 28109 Pseudoalteromonas espejiana 1 28107 387 species 0 0 2670 no rank 5 194690 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 1720343 species 462 0 234831 1 Pseudoalteromonas sp. SM9913 0 391 species 1761891 1 Pseudoalteromonas sp. 13-15 0 species 415 species 974 0 Pseudoalteromonas sp. NC201 1514074 1 1 283699 Pseudoalteromonas sp. Bsw20308 0 428 species 1071 species 0 Pseudoalteromonas piratica 1348114 1 Pseudoalteromonas atlantica 1 288 species 628 0 328 species 0 Pseudoalteromonas translucida 166935 1 0 species 268 1 43658 Pseudoalteromonas rubra species 491 0 Pseudoalteromonas phenolica 1 161398 354 species 0 Pseudoalteromonas tetraodonis 1 43659 686 species 0 Pseudoalteromonas spongiae 298657 1 Pseudoalteromonas agarivorans 176102 1 387 species 0 1 267375 Pseudoalteromonas marina 0 species 337 0 species 463 394751 1 Pseudoalteromonas arctica species 506 0 Pseudoalteromonas tunicata 314281 1 Pseudoalteromonas piscicida 1 43662 312 species 0 Moritellaceae 1 3 267891 family 573 0 5 0 1 genus 568 2 58050 Moritella 1 Moritella viscosa 1 80854 567 species 0 1 Psychromonadaceae 267894 4 family 1035 2 0 genus 1033 0 4 1 Psychromonas 67572 3 1 357794 Psychromonas ingrahamii 0 species 579 450 no rank 0 2614957 1 0 450 species 1 314282 Psychromonas sp. CNPT3 Colwelliaceae 1 9 267889 3851 family 0 8 1 0 499 genus 1518149 2 1 Thalassotalea 1 1763536 Thalassotalea crassostreae 0 498 species 28228 6 1 Colwellia 20 0 3344 genus 0 1935 no rank 3 196834 species 693 0 Colwellia sp. PAMC 21821 1816219 1 0 602 species 1 58049 Colwellia sp. MT41 1816218 1 Colwellia sp. PAMC 20917 0 640 species 1967665 1 Colwellia beringensis 0 species 706 species 683 0 Colwellia psychrerythraea 28229 1 Shewanellaceae 1 25 267890 7135 family 9 0 7126 genus 74 0 Shewanella 1 24 22 1 2018305 Shewanella bicestrii 0 157 species 1 70863 Shewanella oneidensis 0 174 species 196818 6 1184 no rank 0 species 182 0 Shewanella sp. ANA-3 1 94122 species 217 0 Shewanella sp. WE21 2029986 1 species 159 0 Shewanella sp. MR-7 60481 1 0 236 species 1 351745 Shewanella sp. W3-18-1 1 60480 Shewanella sp. MR-4 0 species 155 235 species 0 Shewanella sp. Pdp11 1 2059264 1 24 Shewanella putrefaciens 0 species 344 135 species 0 Shewanella loihica 1 359303 0 348 species 271097 1 Shewanella sediminis 0 698 species 1 271098 Shewanella halifaxensis Shewanella marisflavi 260364 1 152 species 0 0 species 324 1 404011 Shewanella piezotolerans 0 406 species 1 56812 Shewanella frigidimarina Shewanella amazonensis 60478 1 162 species 0 species 502 0 Shewanella japonica 1 93973 1 70864 Shewanella pealeana 0 species 226 388 species 0 Shewanella woodyi 60961 1 0 species 730 1 62322 Shewanella baltica 0 436 species 225848 1 Shewanella psychrophila species 405 0 Shewanella violacea 1 60217 Shewanella denitrificans 1 192073 species 281 0 10278 family 0 22 Alteromonadaceae 1 29 72275 266 genus 2 0 Agarivorans 1 2 261825 0 species 264 1 680279 Agarivorans gilvus 1 Lacimicrobium 1751872 2 275 genus 0 2 273 species 0 Lacimicrobium alkaliphilum 1 1526571 1 1621534 0 753 genus 326544 1 Paraglaciecola psychrophila 0 species 753 8 0 genus 757 89404 3 1 Glaciecola Glaciecola nitratireducens 300231 1 397 species 0 352 no rank 0 2618684 1 352 species 0 Glaciecola sp. 4H-3-7+YE-5 1 983545 2299 genus 62 0 Marinobacter 1 10 2742 species 178 0 Marinobacter salinus 1 1874317 658 no rank 0 83889 3 0 224 species 490759 1 Marinobacter sp. BSs20148 Marinobacter sp. LQ44 1 1749259 species 204 0 1671721 1 Marinobacter sp. CP1 0 species 230 0 215 species 330734 1 Marinobacter psychrophilus Marinobacter salarius 1 1420917 species 433 0 0 species 224 1420916 1 Marinobacter similis species 250 0 Marinobacter adhaerens 1 1033846 1 2743 Marinobacter hydrocarbonoclasticus 0 279 species 226 10 1 Alteromonas 45 0 5906 genus 0 2475 species 28108 1 Alteromonas macleodii 0 363 species 287094 1 Alteromonas addita species 376 0 Alteromonas naphthalenivorans 1 715451 0 no rank 1228 2614992 3 Alteromonas sp. RW2A1 1 1917158 species 463 0 2058133 1 Alteromonas sp. MB-3u-76 0 species 481 species 284 0 Alteromonas sp. Mac1 1777491 1 Alteromonas stellipolaris 1 233316 393 species 0 Alteromonas mediterranea 1 314275 species 696 0 Alteromonas australica 589873 1 species 330 0 172 family 0 2 267892 2 0 172 genus 44011 2 1 Ferrimonas 170 species 0 Ferrimonas balearica 44012 1 0 65 12268 order 135614 53 1 Xanthomonadales family 1293 19 0 Rhodanobacteraceae 1 13 1775411 0 genus 240 323413 1 240 species 0 Dokdonella koreensis 1 323415 genus 128 0 1 2233801 128 species 0 Xanthomonadales bacterium D13 1 2021234 430 genus 10 0 1 Dyella 231454 4 Dyella japonica 231455 1 species 157 0 0 species 118 1 1379159 Dyella jiangningensis Dyella thiooxydans 445710 1 species 145 0 0 3 genus 123 70411 2 1 Frateuria 1 81475 Frateuria aurantia 0 species 120 0 1 205 genus 2 75309 Rhodanobacter 1 1 666685 Rhodanobacter denitrificans 0 species 204 Luteibacter 1 2 242605 genus 148 0 1 147 species 0 Luteibacter rhizovicinus 1 242606 39 32033 Xanthomonadaceae 1 93 0 10910 family genus 2479 0 53 Stenotrophomonas 1 9 40323 species 283 0 Stenotrophomonas acidaminiphila 128780 1 138 species 0 Stenotrophomonas rhizophila 1 216778 0 species 189 83617 1 Stenotrophomonas nitritireducens 196198 4 0 no rank 668 0 species 184 1827305 1 Stenotrophomonas sp. MYb57 Stenotrophomonas sp. KCTC 12332 1 1793721 species 178 0 Stenotrophomonas sp. WZN-1 2005046 1 161 species 0 Stenotrophomonas sp. LM091 1 1904944 145 species 0 1148 species group 0 1 995085 1 40324 Stenotrophomonas maltophilia 0 species 1148 genus 5351 0 137 1 Xanthomonas 338 17 Xanthomonas translucens 1 343 species 378 0 0 species 1035 1 347 Xanthomonas oryzae 260 species 0 Xanthomonas vesicatoria 1 56460 195 species 0 Xanthomonas sacchari 1 56458 0 species 135 53413 1 Xanthomonas axonopodis Xanthomonas hortorum 1 56454 166 species 0 888 species 0 Xanthomonas campestris 339 1 48664 1 Xanthomonas fragariae 0 species 243 0 100 species 1985254 1 Xanthomonas phaseoli Xanthomonas vasicola 56459 1 species 133 0 species 170 0 Xanthomonas euvesicatoria 456327 1 124 species 0 Xanthomonas albilineans 1 29447 1 442694 Xanthomonas perforans 0 species 123 0 106 species 1 366650 Xanthomonas alfalfae 1158 species group 0 2 643453 0 species 222 366648 1 Xanthomonas fuscans 1 346 Xanthomonas citri 0 936 species 2370 2 1 Xylella 1 0 genus 864 863 species 0 Xylella fastidiosa 2371 1 1 Pseudoxanthomonas 83618 3 453 genus 3 0 Pseudoxanthomonas suwonensis 314722 1 313 species 0 Pseudoxanthomonas spadix 1 415229 species 137 0 2 83614 Luteimonas 1 4 0 genus 140 0 136 species 2006110 1 Luteimonas sp. 100111 0 15 1530 genus 5 68 Lysobacter 1 0 220 species 69 1 Lysobacter enzymogenes 0 467 species 1 435897 Lysobacter capsici 0 586 species 84531 1 Lysobacter antibioticus 0 species 242 1 262324 Lysobacter gummosus 127 0 56661 order 91347 245 1 Enterobacterales 22 1903414 Morganellaceae 1 0 13 5172 family 1 Xenorhabdus 626 6 genus 1165 10 0 0 189 species 1 628 Xenorhabdus nematophila 0 354 species 1 40576 Xenorhabdus bovienii species 242 0 Xenorhabdus hominickii 351679 1 0 species 184 351671 1 Xenorhabdus doucetiae Xenorhabdus poinarii 40577 1 species 186 0 6 0 genus 844 29487 4 1 Photorhabdus 1 574560 Photorhabdus temperata 0 223 species Photorhabdus asymbiotica 1 291112 354 species 0 Photorhabdus luminescens 1 29488 261 species 0 1276 genus 0 5 Proteus 1 3 583 1 585 Proteus vulgaris 0 503 species species 768 0 Proteus mirabilis 584 1 586 4 1 Providencia 4 0 1070 genus 0 440 species 1 588 Providencia stuartii 0 247 species 126385 1 Providencia alcalifaciens 1 587 Providencia rettgeri 0 species 379 1 Morganella 581 2 genus 204 2 0 Morganella morganii 582 1 202 species 0 637 2 1 Arsenophonus 1 0 600 genus 599 species 0 Arsenophonus symbiont of Lipoptena fortisetosa 634113 1 3044 family 0 9 Pectobacteriaceae 1 20 1903410 Pectobacterium 1 6 122277 1154 genus 31 0 1 2042057 Pectobacterium polaris 0 species 136 0 species 285 1 1905730 Pectobacterium parmentieri 29471 1 Pectobacterium atrosepticum 0 150 species 1 554 Pectobacterium carotovorum 0 species 425 Pectobacterium wasabiae 55208 1 species 127 0 84565 5 1 Sodalis 29 0 genus 702 0 species 160 63612 1 Sodalis glossinidius 0 123 species 1239307 1 Sodalis praecaptivus Candidatus Sodalis pierantonius 1 1486991 species 144 0 246 species 0 Sodalis endosymbiont of Henestaris halophilus 1 1929246 165 genus 7 0 1 Brenneria 71655 2 0 158 species 1109412 1 Brenneria goodwinii 35 0 1014 genus 6 204037 Dickeya 1 Dickeya dianthicola 1 204039 111 species 0 Dickeya zeae 204042 1 399 species 0 species 128 0 Dickeya fangzhongdai 1778540 1 1089444 1 Dickeya solani 0 species 223 species 118 0 Dickeya dadantii 204038 1 8316 family 23 0 1 Yersiniaceae 1903411 38 0 88 3068 genus 16 613 Serratia 1 species 114 0 Serratia rubidaea 1 61652 0 115 species 28151 1 Serratia proteamaculans 0 species 108 61651 1 Serratia ficaria 1 614 Serratia liquefaciens 0 173 species 1 82996 Serratia plymuthica 0 257 species 1009 no rank 0 8 2647522 0 species 181 1 104623 Serratia sp. ATCC 39006 0 92 species 1 768493 Serratia sp. AS13 0 species 102 1758196 1 Serratia sp. SSNIH1 Serratia sp. SCBI 1 488142 species 193 0 768490 1 Serratia sp. AS12 0 92 species 0 species 93 2033438 1 Serratia sp. MYb239 0 116 species 671990 1 Serratia sp. FGI94 1 1327989 Serratia sp. FS14 0 species 140 Serratia fonticola 1 47917 species 379 0 1 615 Serratia marcescens 0 825 species Rahnella 1 4 34037 472 genus 0 8 no rank 339 0 2635087 2 Rouxiella sp. ERMR1:05 1805933 1 species 202 0 137 species 0 Rahnella sp. Y9602 1 741091 1 34038 Rahnella aquatilis 0 species 125 genus 151 2 0 Chania 1 2 1745211 Chania multitudinisentens 1 1639108 species 149 0 2 929812 Gibbsiella 1 0 1 133 genus Gibbsiella quercinecans 929813 1 species 132 0 0 45 4469 genus 13 629 Yersinia 1 29484 1 Yersinia frederiksenii 0 477 species Yersinia aleksiciae 1 263819 species 130 0 2653513 1 no rank 188 0 0 species 188 1 1839800 Yersinia sp. FDAARGOS_228 Yersinia aldovae 29483 1 230 species 0 Yersinia kristensenii 28152 1 species 170 0 Yersinia ruckeri 1 29486 201 species 0 0 species 203 1 29485 Yersinia rohdei Yersinia intermedia 631 1 206 species 0 699 species 0 Yersinia enterocolitica 1 630 1649845 3 0 1920 species group 367190 1 Yersinia similis 0 species 833 592 species 0 Yersinia pestis 632 1 0 species 495 633 1 Yersinia pseudotuberculosis 10728 family 23 0 Erwiniaceae 1 27 1903409 2 51228 Wigglesworthia 1 0 17 genus 1220 0 species 1203 51229 1 Wigglesworthia glossinidia 21 0 977 genus 8 551 Erwinia 1 Erwinia gerundensis 1 1619313 species 143 0 0 species 169 1 182337 Erwinia billingiae 0 91 species 79967 1 Erwinia pyrifoliae 2622719 1 92 no rank 0 0 species 92 215689 1 Erwinia sp. Ejp617 1 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 species 259 99 species 0 Erwinia tasmaniensis 1 338565 103 species 0 Erwinia amylovora 552 1 2100764 2 257 genus 0 665914 1 Pantoea gaviniae 0 species 107 665913 1 Pantoea calida 0 species 150 0 genus 147 1 82986 species 147 0 Tatumella citrea 1 53336 genus 6211 18 0 Buchnera 1 2 32199 1 9 Buchnera aphidicola 0 6193 species Pantoea 1 11 53335 genus 1893 0 43 0 130 species 1 66269 Pantoea stewartii species 415 0 Candidatus Pantoea carbekii 1 1235990 0 species 257 1 470934 Pantoea vagans no rank 405 0 2630326 3 Pantoea sp. PSNIH1 1484158 1 137 species 0 1484157 1 Pantoea sp. PSNIH2 0 species 126 0 142 species 1 592316 Pantoea sp. At-9b species 216 0 Pantoea ananatis 553 1 0 species 94 1 1076550 Pantoea rwandensis 1654067 1 0 221 species group Pantoea agglomerans 1 549 221 species 0 species 112 0 Pantoea alhagi 1 1891675 2 451511 0 230 no rank 0 3 230 genus 2 702 Plesiomonas 1 703 1 Plesiomonas shigelloides 0 species 227 1903416 2 1 Budviciaceae 0 1 family 181 genus 180 0 1 82984 0 180 species 82985 1 Pragia fontium Enterobacteriaceae 1 119 543 23766 family 0 157 3857 genus 0 59 Klebsiella 1 10 570 571 1 Klebsiella oxytoca 0 species 521 234 species 0 Klebsiella variicola 1 244366 1463165 1 Klebsiella quasipneumoniae 0 149 species 1 1134687 Klebsiella michiganensis 0 species 306 0 221 no rank 2608929 2 Klebsiella sp. M5al 1 1934254 111 species 0 0 species 110 1 1905288 Klebsiella sp. LTGPAF-6F 1560 species 0 Klebsiella pneumoniae 1 573 Klebsiella aerogenes 548 1 667 species 0 Klebsiella quasivariicola 2026240 1 species 140 0 1 401618 334 genus 0 334 species 0 Candidatus Riesia pediculicola 401619 1 Cedecea 1 2 158483 341 genus 1 0 Cedecea neteri 1 158822 340 species 0 2833 genus 0 105 Enterobacter 1 22 547 354276 12 species group 2034 0 1 61645 Enterobacter asburiae 0 species 216 232 no rank 0 2757714 3 species 95 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 1 0 species 68 1915310 1 Enterobacter cloacae complex sp. ECNIH7 species 69 0 Enterobacter cloacae complex bacterium 1 2027919 Enterobacter kobei 1 208224 species 67 0 0 354 species 498 158836 3 1 Enterobacter hormaechei 0 subspecies 99 1812934 1 Enterobacter cloacae complex 'Hoffmann cluster III' Enterobacter xiangfangensis 1296536 1 subspecies 45 0 0 species 835 1 550 Enterobacter cloacae 1 69218 Enterobacter cancerogenus 0 species 68 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 1 species 50 0 1 299767 Enterobacter ludwigii 0 species 68 9 2608935 0 694 no rank 1560339 1 Enterobacter sp. E20 0 species 50 Enterobacter sp. 638 399742 1 species 91 0 Enterobacter sp. Crenshaw 1 1977566 51 species 0 1 1692238 Enterobacter sp. FY-07 0 109 species 1166130 1 Enterobacter sp. R4-368 0 102 species 0 82 species 1 2051905 Enterobacter sp. CRENT-193 Enterobacter sp. ODB01 1 1827481 species 71 0 0 species 39 1868135 1 Enterobacter sp. HK169 1914861 1 Enterobacter sp. SA187 0 99 species 1 Citrobacter 544 14 genus 2096 42 0 0 species 96 67825 1 Citrobacter rodentium species 250 0 Citrobacter amalonaticus 1 35703 0 1259 species group 7 1344959 Citrobacter freundii 546 1 513 species 0 1 2077147 Citrobacter freundii complex sp. CFNIH3 0 87 species 1 2077149 Citrobacter freundii complex sp. CFNIH9 0 species 96 1 57706 Citrobacter braakii 0 species 173 1 2077148 Citrobacter freundii complex sp. CFNIH4 0 species 92 Citrobacter freundii complex sp. CFNIH2 1 2066049 species 109 0 0 189 species 67827 1 Citrobacter werkmanii 2644389 2 no rank 171 0 species 80 0 Citrobacter sp. FDAARGOS_156 1702170 1 Citrobacter sp. CFNIH10 1920110 1 species 91 0 species 115 0 Citrobacter koseri 1 545 Citrobacter farmeri 67824 1 species 163 0 1 Lelliottia 1330545 4 genus 372 0 4 0 87 species 1907578 1 Lelliottia jeotgali 0 172 species 61646 1 Lelliottia amnigena 109 species 0 Lelliottia nimipressuralis 1 69220 3283 genus 0 4 1 Escherichia 561 5 1 564 Escherichia fergusonii 0 species 90 Escherichia coli 562 1 species 2887 0 Escherichia albertii 208962 1 199 species 0 species 103 0 Escherichia marmotae 1499973 1 1 Candidatus Ishikawaella 409304 2 538 genus 2 0 Candidatus Ishikawaella capsulata 168169 1 536 species 0 genus 108 0 1 579 0 species 108 1 61648 Kluyvera intermedia no rank 820 0 5 36866 1920128 1 Enterobacteriaceae bacterium ENNIH3 0 117 species 0 121 species 2066051 1 Enterobacteriaceae bacterium ENNIH1 species 96 0 Enterobacteriaceae bacterium strain FGI 57 693444 1 Enterobacteriaceae bacterium ENNIH2 1 1920109 species 90 0 1 891974 Plautia stali symbiont 0 species 396 1 1048757 73 genus 0 Candidatus Moranella endobia 1 1048758 73 species 0 2 0 genus 2174 590 3 1 Salmonella 54736 1 Salmonella bongori 0 species 170 2002 species 0 Salmonella enterica 1 28901 369 genus 0 3 Raoultella 1 3 160674 95 species 0 Raoultella planticola 575 1 0 271 species 54291 1 Raoultella ornithinolytica 1335483 1 genus 79 0 0 species 79 1 563 Shimwellia blattae 0 5 genus 215 4 620 Shigella 1 46 no rank 0 2629414 1 0 46 species 1813821 1 Shigella sp. PAMC 28760 species 110 0 Shigella dysenteriae 622 1 623 1 Shigella flexneri 0 species 54 12 0 279 genus 83654 4 1 Leclercia 2 2627398 173 no rank 0 1920114 1 Leclercia sp. LSNIH1 0 91 species 82 species 0 Leclercia sp. LSNIH3 1 1920116 Leclercia adecarboxylata 1 83655 94 species 0 20 191675 4290 no rank 0 84563 20 0 4290 clade 255 genus 1 0 Candidatus Mikella 1 2 1906660 1 1778264 Candidatus Mikella endobia 0 254 species 1906661 1 0 genus 211 0 211 species 1 1070130 Candidatus Gullanella endobia 637 clade 0 146507 3 0 285 species 1 134287 secondary endosymbiont of Heteropsylla cubana secondary endosymbiont of Ctenarytaina eucalypti 1199245 1 119 species 0 568987 1 0 genus 233 0 species 233 138072 1 Candidatus Hamiltonella defensa Candidatus Tachikawaea 1 2 1682492 582 genus 0 3 0 579 species 1 1410383 Candidatus Tachikawaea gelatinosa 1 199891 0 clade 233 species 233 0 secondary endosymbiont of Trabutina mannipara 1 1835721 0 clade 2176 84564 7 203804 7 1 Candidatus Blochmannia 0 15 genus 2176 314 species 0 Candidatus Blochmannia chromaiodes 251542 1 101534 1 Candidatus Blochmannia pennsylvanicus 0 277 species 0 387 species 203907 1 Candidatus Blochmannia floridanus 750 no rank 0 711328 2 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 1 431 species 0 319 species 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 1505596 251535 1 Candidatus Blochmannia vafer 0 433 species 4 0 120 genus 2 1906659 Candidatus Hoaglandella 1 0 116 species 1 1778263 Candidatus Hoaglandella endobia Candidatus Doolittlea 1 2 1906657 76 genus 0 1 1 1778262 Candidatus Doolittlea endobia 0 species 75 491 genus 0 9 Kosakonia 1 5 1330547 283686 1 Kosakonia radicincitans 0 153 species 0 species 93 208223 1 Kosakonia cowanii species 118 0 Kosakonia sacchari 1158459 1 Kosakonia oryzae 497725 1 118 species 0 3 1330546 Pluralibacter 1 2 0 genus 308 0 species 119 1334193 1 [Enterobacter] lignolyticus 61647 1 Pluralibacter gergoviae 0 187 species 413496 8 1 Cronobacter 20 0 genus 749 species 109 0 Cronobacter muytjensii 413501 1 Cronobacter dublinensis 413497 1 species 97 0 Cronobacter malonaticus 413503 1 species 64 0 28141 1 Cronobacter sakazakii 0 166 species 1163710 1 Cronobacter condimenti 0 species 105 Cronobacter universalis 535744 1 86 species 0 1 413502 Cronobacter turicensis 0 species 102 1 Hafniaceae 1903412 14 family 5097 10 0 31 0 genus 4397 8 635 Edwardsiella 1 0 species 175 1 1821960 Edwardsiella anguillarum 2676541 2 287 no rank 0 Edwardsiella sp. LADL05-105 1650654 1 species 150 0 Edwardsiella sp. EA181011 1 1578828 species 137 0 Edwardsiella tarda 1 636 3587 species 0 67780 1 Edwardsiella ictaluri 0 species 127 1 1263550 Edwardsiella piscicida 0 130 species species 60 0 Edwardsiella hoshinae 93378 1 genus 142 0 2 Obesumbacterium 1 2 82982 Obesumbacterium proteus 1 82983 species 140 0 genus 548 2 0 1 Hafnia 568 3 Hafnia alvei 1 569 species 411 0 1 2621980 0 no rank 135 Hafnia sp. CBA7124 1 1848580 species 135 0 1775403 4 1 Nevskiales 0 9 178 order Sinobacteraceae 1 568386 family 2 0 0 167 family 2689614 2 genus 167 0 10 Steroidobacter 1 2 469322 Steroidobacter denitrificans 465721 1 157 species 0 51 0 order 6460 135613 50 1 Chromatiales 1 0 401 family 449719 3 1 Granulosicoccaceae 400 genus 6 0 Granulosicoccus 1 2 437504 1 437505 Granulosicoccus antarcticus 0 species 394 72276 17 1 Ectothiorhodospiraceae 44 0 family 2159 0 34 genus 1004 6 106633 Thioalkalivibrio 1 1 2621013 0 no rank 186 species 186 0 Thioalkalivibrio sp. K90mix 396595 1 Thioalkalivibrio versutus 1 106634 154 species 0 1 186931 Thioalkalivibrio nitratireducens 0 168 species 0 species 282 1 1033854 Thioalkalivibrio sulfidiphilus Thioalkalivibrio paradoxus 1 108010 180 species 0 Alkalilimnicola 1 2 133193 186 genus 0 2 Alkalilimnicola ehrlichii 1 351052 species 184 0 9 0 315 genus 1335745 3 1 Spiribacter 0 species 181 1 1335757 Spiribacter curvatus 125 species 0 Spiribacter salinus 1335746 1 226 genus 0 1765964 1 226 species 0 Acidihalobacter prosperus 1 160660 2 0 170 genus 2 85108 Halorhodospira 1 1 1053 Halorhodospira halophila 0 168 species 214 genus 0 3 Ectothiorhodospira 1 2 1051 0 211 no rank 2684909 1 0 211 species 1 1442136 Ectothiorhodospira sp. BSL-9 2 451214 212 no rank 0 genus 212 0 11 Thiohalobacter 1 2 1273155 species 201 0 Thiohalobacter thiocyanaticus 585455 1 1046 17 1 Chromatiaceae 0 23 2869 family 2 85072 Allochromatium 1 1 0 168 genus 1 1049 Allochromatium vinosum 0 species 167 156885 2 1 Thioflavicoccus 4 0 252 genus 248 species 0 Thioflavicoccus mobilis 1 80679 348 genus 0 1 1980513 1 1630141 Candidatus Nitrosoglobus terrae 0 348 species 225 no rank 0 1 82569 225 species 0 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 1 genus 721 8 0 1 Nitrosococcus 1227 4 species 176 0 Nitrosococcus oceani 1229 1 species 364 0 Nitrosococcus watsonii 1 473531 Nitrosococcus halophilus 133539 1 173 species 0 0 3 197 genus 2 13724 Thiocystis 1 194 species 0 Thiocystis violascens 73141 1 genus 688 0 6 1 Thiodictyon 53392 2 species 682 0 Candidatus Thiodictyon syntrophicum 1 1166950 2 85076 Marichromatium 1 0 4 247 genus 37487 1 Marichromatium purpuratum 0 species 243 270 family 0 2 Halothiobacillaceae 1 4 255526 0 12 genus 268 3 109262 Halothiobacillus 1 no rank 123 0 2636392 1 species 123 0 Halothiobacillus sp. LS2 1860122 1 Halothiobacillus neapolitanus 927 1 species 133 0 1 Woeseiaceae 1738654 3 248 family 0 1 14 0 genus 247 2 1738655 Woeseia 1 1548547 1 Woeseia oceani 0 233 species 3 1676141 Wenzhouxiangellaceae 1 0 5 family 250 1676142 2 1 Wenzhouxiangella 3 0 245 genus species 242 0 Wenzhouxiangella marina 1 1579979 0 4829 no rank 118884 13 2 349742 Sedimenticola 1 0 6 243 genus 1 1543721 Sedimenticola thiotaurini 0 237 species 17 0 1506 genus 655184 3 1 Candidatus Thioglobus Candidatus Thioglobus autotrophicus 1 1705394 species 470 0 0 1019 species 1 1427364 Candidatus Thioglobus singularis 0 1699 clade 4 32036 113267 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 0 440 species 693 species 0 Calyptogena okutanii thioautotrophic gill symbiont 1 410330 1541743 2 1 Candidatus Ruthia 0 5 genus 566 Candidatus Ruthia magnifica 1 386487 561 species 0 1 Thiolapillus 1608298 2 genus 196 3 0 1 1076588 Thiolapillus brandeum 0 species 193 1 1524249 genus 255 0 255 species 0 Pseudohongiella spirulinae 1249552 1 1 198346 0 clade 930 930 species 0 Candidatus Baumannia cicadellinicola 186490 1 0 7 order 16576 72273 34 1 Thiotrichales 14 135616 Piscirickettsiaceae 1 0 16 family 3507 3 40222 Methylophaga 1 0 14 621 genus 0 248 species 1 754477 Methylophaga frappieri 0 359 species 1 754476 Methylophaga nitratireducenticrescens 28884 1 genus 245 0 0 species 245 39765 1 Hydrogenovibrio crunogenus 0 22 genus 1489 34067 4 1 Cycloclasticus 2 2621467 0 no rank 942 0 454 species 385025 1 Cycloclasticus sp. P1 Cycloclasticus sp. PY97N 1 728003 species 488 0 1 1329899 Cycloclasticus zancles 0 525 species genus 691 0 2 1 Piscirickettsia 1237 2 1 1238 Piscirickettsia salmonis 0 689 species 3 0 genus 445 3 933 Thiomicrospira 1 1 147268 Thiomicrospira cyclica 0 species 197 0 species 245 1 92245 Thiomicrospira aerophila 0 19 11893 family 15 34064 Francisellaceae 1 11180 genus 0 132 1 Francisella 262 12 930 species 0 Francisella noatunensis 657445 1 0 2094 species 1 549298 Francisella halioticida 0 629 species 622488 1 Francisella hispaniensis 0 species 544 1 573569 Francisella sp. TX077308 0 no rank 1195 2 2610885 1547445 1 Francisella sp. FSC1006 0 species 634 475375 1 Francisella sp. MA067296 0 561 species 263 1 Francisella tularensis 0 1848 species species 594 0 Francisella persica 954 1 1 28110 Francisella philomiragia 0 species 1485 0 species 898 1 573570 Francisella sp. TX077310 0 831 species 1 1542390 Francisella sp. CA97-1460 genus 694 1 0 1 Allofrancisella 1869285 2 species 693 0 Allofrancisella guangzhouensis 1 594679 9 0 family 1169 135617 4 1 Thiotrichaceae 8 0 618 genus 40751 2 1 Thioploca 0 610 species 1 40754 Thioploca ingrica 1021 1 genus 542 0 Beggiatoa leptomitoformis 288004 1 species 542 0 0 7 order 206 1934945 4 1 Immundisolibacterales 7 0 family 199 3 1934946 Immundisolibacteraceae 1 1934947 2 1 Immundisolibacter 0 3 genus 192 1810504 1 Immundisolibacter cernigliae 0 189 species 1613 order 2 0 Methylococcales 1 13 135618 1 Methylococcaceae 403 12 family 1611 15 0 762296 2 1 Methylovulum 1 0 154 genus 153 species 0 Methylovulum psychrotolerans 1704499 1 949 genus 38 0 1 Methylomonas 416 5 1538553 1 Methylomonas denitrificans 0 species 300 1 702114 Methylomonas koyamae 0 210 species 0 192 species 421 1 Methylomonas methanica 0 209 no rank 2608980 1 Methylomonas sp. DH-1 1 1727196 species 209 0 132 genus 0 5 Methylococcus 1 2 413 414 1 Methylococcus capsulatus 0 127 species genus 361 0 4 Methylomicrobium 1 2 39773 271065 1 Methylomicrobium alcaliphilum 0 357 species 103 0 order 39301 72274 128 1 Pseudomonadales 85 135621 Pseudomonadaceae 1 0 122 family 22938 1 Pseudomonas 286 80 genus 21951 617 0 136 species 0 Pseudomonas cremoricolorata 157783 1 Pseudomonas silesiensis 1 1853130 243 species 0 Pseudomonas lurida 1 244566 95 species 0 0 species 161 1 1583341 Pseudomonas cerasi Pseudomonas rhizosphaerae 1 216142 118 species 0 3592 species group 0 136843 9 species 103 0 Pseudomonas mandelii 1 75612 0 species 105 76758 1 Pseudomonas orientalis 0 species 178 1 380021 Pseudomonas protegens 76761 1 Pseudomonas veronii 0 species 90 0 565 species 1 200450 Pseudomonas trivialis 47878 1 Pseudomonas azotoformans 0 species 332 200451 1 Pseudomonas poae 0 117 species 0 2010 species 1 294 Pseudomonas fluorescens 92 species 0 Pseudomonas corrugata 47879 1 0 species 178 65741 1 Pseudomonas knackmussii species 292 0 Pseudomonas koreensis 198620 1 6 136845 0 species group 3090 species 401 0 Pseudomonas monteilii 76759 1 70775 1 Pseudomonas plecoglossicida 0 116 species 1 78327 Pseudomonas mosselii 0 360 species 0 species 153 47885 1 Pseudomonas oryzihabitans 0 species 265 47880 1 Pseudomonas fulva Pseudomonas putida 303 1 1795 species 0 0 species 263 930166 1 Pseudomonas brassicacearum 136849 8 0 2216 species group 46257 1 Pseudomonas avellanae 0 117 species Pseudomonas viridiflava 33069 1 108 species 0 0 1039 species subgroup 251695 1 1039 species 0 Pseudomonas syringae 1 317 1 251701 Pseudomonas syringae group genomosp. 3 0 species 300 36746 1 Pseudomonas cichorii 0 species 117 251698 2 417 species subgroup 0 47877 1 Pseudomonas amygdali 0 species 198 1 29438 Pseudomonas savastanoi 0 219 species 0 no rank 118 1 2775504 1 1206777 Pseudomonas sp. Lz4W 0 species 118 196821 30 0 4340 no rank Pseudomonas sp. S-6-2 1931241 1 species 178 0 0 species 125 1500687 1 Pseudomonas sp. St29 Pseudomonas sp. LPH1 1898684 1 173 species 0 0 106 species 2049589 1 Pseudomonas sp. HLS-6 Pseudomonas sp. NC02 2067572 1 species 171 0 128 species 0 Pseudomonas sp. PONIH3 1 1636610 Pseudomonas sp. CC6-YY-74 1930532 1 species 197 0 2083051 1 Pseudomonas sp. SWI6 0 131 species 2083054 1 Pseudomonas sp. LG1D9 0 species 111 Pseudomonas sp. M30-35 1 1981174 species 200 0 1 1259844 Pseudomonas sp. FGI182 0 species 143 Pseudomonas sp. Os17 1500686 1 species 136 0 species 253 0 Pseudomonas sp. URMO17WK12:I11 1283291 1 0 144 species 1 1294143 Pseudomonas sp. ATCC 13867 163 species 0 Pseudomonas sp. StFLB209 1028989 1 1659194 1 Pseudomonas sp. GR 6-02 0 species 108 Pseudomonas sp. SWI36 1 2083052 species 139 0 128 species 0 Pseudomonas sp. MRSN12121 1611770 1 0 species 132 2083053 1 Pseudomonas sp. SWI44 Pseudomonas sp. FDAARGOS_380 2018067 1 118 species 0 1 1827300 Pseudomonas sp. MYb193 0 species 103 species 114 0 Pseudomonas sp. VLB120 69328 1 1 1207075 Pseudomonas sp. UW4 0 species 114 120 species 0 Pseudomonas sp. LH1G9 2083055 1 species 122 0 Pseudomonas sp. JY-Q 1338689 1 species 140 0 Pseudomonas sp. XWY-1 1 2069256 0 211 species 1 1415630 Pseudomonas sp. TKP species 144 0 Pseudomonas sp. CCOS 191 1 1649877 Pseudomonas sp. DR 5-09 1 1534110 111 species 0 0 species 177 1856685 1 Pseudomonas sp. TCU-HL1 1 104087 Pseudomonas frederiksbergensis 0 species 375 Pseudomonas antarctica 1 219572 93 species 0 6 136841 0 species group 2716 1 300 Pseudomonas mendocina 0 632 species 43263 1 Pseudomonas alcaligenes 0 177 species 1 1232139 species subgroup 276 0 species 276 0 Pseudomonas furukawaii 1 1149133 0 species 235 1 53412 Pseudomonas resinovorans 1049 species 0 Pseudomonas aeruginosa 1 287 species 347 0 Pseudomonas citronellolis 53408 1 0 180 species 1 237610 Pseudomonas psychrotolerans Pseudomonas versuta 1 1788301 species 118 0 157782 1 Pseudomonas parafulva 0 277 species 2 136846 species group 1463 0 0 species 192 74829 1 Pseudomonas balearica 0 species subgroup 1271 1 578833 0 1271 species 1 316 Pseudomonas stutzeri species 120 0 Pseudomonas entomophila 1 312306 145 species 0 Pseudomonas alkylphenolica 1 237609 1 101564 Pseudomonas alcaliphila 0 156 species 0 species group 967 136842 2 250 species 0 Pseudomonas fragi 296 1 Pseudomonas chlororaphis 1 587753 species 717 0 3 351 0 611 subfamily 0 5 genus 611 352 3 1 Azotobacter species 216 0 Azotobacter vinelandii 1 354 0 species 390 353 1 Azotobacter chroococcum 1849530 1 254 genus 0 254 species 0 Oblitimonas alkaliphila 1697053 1 468 42 1 Moraxellaceae 46 0 16260 family 48 0 genus 2716 11 497 Psychrobacter 1 0 268 species 45610 1 Psychrobacter urativorans 196806 6 no rank 1557 0 Psychrobacter sp. AntiMn-1 1720344 1 234 species 0 1699622 1 Psychrobacter sp. P2G3 0 278 species Psychrobacter sp. DAB_AL43B 1 1028416 241 species 0 256 species 0 Psychrobacter sp. G 1 571800 0 species 307 1 349106 Psychrobacter sp. PRwf-1 241 species 0 Psychrobacter sp. P11G5 1 1699624 1 261164 Psychrobacter alimentarius 0 species 327 Psychrobacter cryohalolentis 1 330922 277 species 0 239 species 0 Psychrobacter arcticus 1 334543 25 469 Acinetobacter 1 145 0 12180 genus 7 196816 2198 no rank 0 0 335 species 1636603 1 Acinetobacter sp. ACNIH1 0 species 360 1758189 1 Acinetobacter sp. ACNIH2 Acinetobacter sp. SWBY1 2079596 1 317 species 0 0 217 species 1 1808001 Acinetobacter sp. LoGeW2-3 0 species 332 1 1407071 Acinetobacter sp. TGL-Y2 296 species 0 Acinetobacter sp. NCu2D-2 1 1608473 Acinetobacter sp. TTH0-4 1646498 1 species 341 0 429 species 0 Acinetobacter oleivorans 1 1148157 0 660 species 1 1324350 Acinetobacter equi Acinetobacter johnsonii 40214 1 276 species 0 29430 1 Acinetobacter haemolyticus 0 species 456 species 296 0 Acinetobacter radioresistens 40216 1 106648 1 Acinetobacter bereziniae 0 431 species 108981 1 Acinetobacter schindleri 0 266 species Acinetobacter junii 1 40215 species 556 0 Acinetobacter indicus 756892 1 species 171 0 species 357 0 1 202950 Acinetobacter sp. ADP1 62977 1 357 strain 0 909768 5 0 5339 species group Acinetobacter baumannii 1 470 1831 species 0 Acinetobacter calcoaceticus 1 471 849 species 0 106654 1 Acinetobacter nosocomialis 0 species 629 0 species 421 1785128 1 Acinetobacter lactucae 1 48296 Acinetobacter pittii 0 species 1609 1 487316 Acinetobacter soli 0 288 species 312 species 0 Acinetobacter larvae 1789224 1 1318 genus 9 0 1 Moraxella 475 5 158 species 0 Moraxella ovis 1 29433 Moraxella bovoculi 386891 1 species 305 0 543 species 0 Moraxella osloensis 1 34062 0 303 species 1 480 Moraxella catarrhalis 5565 order 0 24 1 Cellvibrionales 1706369 29 1 Spongiibacteraceae 1706375 6 1147 family 26 0 1 Zhongshania 1434050 2 genus 302 4 0 298 species 0 Zhongshania aliphaticivorans 1470434 1 Spongiibacter 1 2 630749 genus 350 0 2 348 no rank 0 1 2631504 Spongiibacter sp. IMCC21906 1620392 1 species 348 0 1084558 1 0 469 genus 716816 1 Oceanicoccus sagamiensis 0 469 species Halieaceae 1 4 1706372 1144 family 5 0 genus 1139 0 31 Halioglobus 1 3 1217416 0 467 species 930806 1 Halioglobus pacificus Halioglobus japonicus 1 930805 641 species 0 Cellvibrionaceae 1 13 1706371 2383 family 0 14 genus 571 0 1 Agarilytica 1 2 2036021 1737490 1 Agarilytica rhodophyticola 0 species 570 genus 364 0 2 1 Saccharophagus 316625 2 Saccharophagus degradans 86304 1 species 362 0 1 0 genus 270 2 447467 Simiduia 1 447471 1 Simiduia agarivorans 0 species 269 0 14 832 genus 4 10 Cellvibrio 1 no rank 559 0 2624793 2 0 297 species 1987723 1 Cellvibrio sp. PSBB006 species 262 0 Cellvibrio sp. PSBB023 1945512 1 Cellvibrio japonicus 155077 1 species 259 0 1 0 332 genus 2 2425 Teredinibacter 1 0 species 331 2426 1 Teredinibacter turnerae 867 family 6 0 Microbulbiferaceae 1 5 1706373 30 0 genus 861 48073 4 1 Microbulbifer 0 species 294 1 1769779 Microbulbifer aggregans Microbulbifer thermotolerans 1 252514 275 species 0 species 262 0 Microbulbifer agarilyticus 1 260552 33811 2 0 no rank 384 species 165 0 endosymbiont of unidentified scaly snail isolate Monju 1248727 1 219 species 0 gamma proteobacterium HdN1 1 83406 5 1240482 0 1217 order 1217 family 0 5 Orbaceae 1 5 1240483 0 1 genus 564 1335631 2 1 Frischella Frischella perrara 1267021 1 species 563 0 2 1193503 Gilliamella 1 0 5 genus 648 0 species 643 1 1196095 Gilliamella apicola 135615 2 order 162 0 162 family 0 7 Cardiobacteriaceae 1 2 868 869 1 genus 155 0 0 155 species 870 1 Dichelobacter nodosus Legionellales 1 21 118969 order 8823 0 7 5 118968 Coxiellaceae 1 0 10 family 1103 0 no rank 343 134284 1 1 1592897 Coxiella-like endosymbiont 0 343 species 750 genus 16 0 1 Coxiella 776 3 1 2676648 no rank 375 0 1 325775 Coxiella endosymbiont of Amblyomma americanum 0 species 375 777 1 Coxiella burnetii 0 species 359 444 15 1 Legionellaceae 0 15 7713 family Legionella 1 12 445 7296 genus 0 74 0 2080 species 446 1 Legionella pneumophila Legionella endosymbiont of Polyplax serrata 1 2005262 708 species 0 species 572 0 Legionella fallonii 1 96230 Legionella clemsonensis 1867846 1 491 species 0 1 449 Legionella hackeliae 0 481 species Legionella oakridgensis 29423 1 392 species 0 45067 1 Legionella lansingensis 0 species 460 Legionella sainthelensi 1 28087 702 species 0 221 species 0 Legionella spiritensis 1 452 661 species 0 Legionella longbeachae 450 1 Legionella waltersii 66969 1 species 454 0 1 Tatlockia 465 2 genus 402 2 0 Tatlockia micdadei 1 451 400 species 0 1 Pasteurellales 135625 30 order 7562 3 0 0 51 7559 family 29 712 Pasteurellaceae 1 0 9 706 genus 713 5 1 Actinobacillus 119 species 0 Actinobacillus succinogenes 67854 1 species 223 0 Actinobacillus pleuropneumoniae 715 1 175 species 0 Actinobacillus suis 716 1 1 718 Actinobacillus equuli 0 180 species 794 genus 8 0 1 Mannheimia 75984 4 75985 1 Mannheimia haemolytica 0 species 252 species 339 0 Mannheimia varigena 85404 1 1 2645054 no rank 195 0 Mannheimia sp. USDA-ARS-USMARC-1261 1432056 1 species 195 0 6 724 Haemophilus 1 17 0 2588 genus Haemophilus influenzae 1 727 1338 species 0 1 730 [Haemophilus] ducreyi 0 553 species Haemophilus parainfluenzae 729 1 266 species 0 no rank 209 0 1 2609962 712310 1 Haemophilus sp. oral taxon 036 0 209 species 1 249188 Haemophilus pittmaniae 0 species 205 3 745 Pasteurella 1 8 0 genus 1349 species 386 0 Pasteurella dagmatis 754 1 0 955 species 1 747 Pasteurella multocida 0 429 genus 1 2094023 Glaesserella parasuis 738 1 species 429 0 1 214906 0 genus 433 0 species 433 731 1 Histophilus somni 3 416916 Aggregatibacter 1 2 0 genus 449 714 1 Aggregatibacter actinomycetemcomitans 0 species 212 1 732 Aggregatibacter aphrophilus 0 species 235 1 Basfia 697331 2 166 genus 1 0 species 165 0 [Mannheimia] succiniciproducens 1 157673 476528 2 1 Bibersteinia 2 0 genus 332 0 species 330 47735 1 Bibersteinia trehalosi genus 262 0 1 155493 Gallibacterium anatis 1 750 species 262 0 0 25 order 4530 29 135624 Aeromonadales 1 42 0 family 4505 28 84642 Aeromonadaceae 1 247 genus 0 4 Zobellella 1 2 347533 species 243 0 Zobellella denitrificans 347534 1 genus 457 0 5 Oceanisphaera 1 3 225143 0 species 228 1903694 1 Oceanisphaera sp. AMac2203 0 224 species 1416627 1 Oceanisphaera profunda 163 0 genus 3363 18 642 Aeromonas 1 1 651 Aeromonas media 0 114 species species 664 0 Aeromonas hydrophila 1 644 128 species 0 Aeromonas aquatica 558964 1 0 336 species 654 1 Aeromonas veronii 0 species 431 1 645 Aeromonas salmonicida no rank 1049 0 8 257493 Aeromonas sp. CA23 1 2033032 species 155 0 species 131 0 Aeromonas sp. CU5 2033033 1 Aeromonas sp. ASNIH2 1 1636607 species 120 0 1 1636608 Aeromonas sp. ASNIH3 0 species 80 Aeromonas sp. ASNIH5 1758179 1 species 113 0 Aeromonas sp. ASNIH4 1636609 1 164 species 0 0 species 80 1 1920107 Aeromonas sp. ASNIH7 1 1636606 Aeromonas sp. ASNIH1 0 species 206 species 80 0 Aeromonas caviae 1 648 127 species 0 Aeromonas rivipollensis 1 948519 1 196024 Aeromonas dhakensis 0 species 150 Aeromonas schubertii 652 1 121 species 0 1 0 172 genus 43947 2 1 Tolumonas Tolumonas auensis 43948 1 171 species 0 Oceanimonas 1 2 129577 genus 224 0 3 1 2636315 0 no rank 221 Oceanimonas sp. GK1 1 511062 221 species 0 6 1692040 Acidiferrobacterales 1 3 0 423 order 0 3 family 420 5 1692041 Acidiferrobacteraceae 1 1 Sulfurifustis 1692042 2 genus 256 6 0 species 250 0 Sulfurifustis variabilis 1 1675686 161 genus 6 0 1 Sulfuricaulis 1744881 2 1620215 1 Sulfuricaulis limicola 0 155 species 62 0 63325 class 338 28216 Betaproteobacteria 1 Neisseriales 1 35 206351 4356 order 0 31 13 1499392 Chromobacteriaceae 1 36 0 1329 family 170 genus 0 2 1 Pseudogulbenkiania 568394 2 1 2642558 0 no rank 168 1 748280 Pseudogulbenkiania sp. NH8B 0 species 168 662 no rank 0 90153 4 535 4 1 Chromobacterium 0 10 genus 662 172 species 0 Chromobacterium violaceum 1 536 2641838 1 0 no rank 191 Chromobacterium sp. ATCC 53434 2059672 1 species 191 0 species 289 0 Chromobacterium vaccinii 1108595 1 3 0 150 genus 2 168470 Laribacter 1 0 species 147 168471 1 Laribacter hongkongensis 160 genus 6 0 1 Aquaspirillum 187 2 154 no rank 0 2620219 1 1938604 1 Aquaspirillum sp. LM1 0 154 species 3 0 151 genus 2 885864 Jeongeupia 1 no rank 148 0 2619593 1 species 148 0 Jeongeupia sp. USM3 1 1906741 family 2996 0 19 Neisseriaceae 1 21 481 5 0 404 genus 3 59 Vitreoscilla 1 0 species 121 63 1 Vitreoscilla filiformis 0 no rank 278 2627922 1 278 species 0 Vitreoscilla sp. C1 1 96942 421605 1 0 no rank 472 species 472 0 Neisseriaceae bacterium DSM 100970 1 2052837 1 1193515 0 genus 281 1 1196083 Snodgrassella alvi 0 species 281 482 12 1 Neisseria 36 0 1499 genus 0 species 91 490 1 Neisseria sicca 0 species 127 1 485 Neisseria gonorrhoeae 488 1 Neisseria mucosa 0 99 species species 408 0 Neisseria meningitidis 1 487 0 species 78 1 1853278 Neisseria sp. 10023 Neisseria elongata 1 495 106 species 0 125 species 0 Neisseria zoodegmatis 1 326523 0 species 110 1 28091 Neisseria weaveri 0 120 species 486 1 Neisseria lactamica 199 no rank 0 2623750 2 0 species 93 1 1853276 Neisseria sp. 10022 species 106 0 Neisseria sp. KEM232 655307 1 genus 225 0 1 1 Simonsiella 71 2 224 species 0 Simonsiella muelleri 1 72 538 1 0 genus 96 species 96 0 Eikenella corrodens 1 539 2 33809 478 no rank 0 Betaproteobacteria bacterium GR16-43 1 1904640 208 species 0 species 270 0 beta proteobacterium CB 543913 1 32 0 4560 order 41 32003 Nitrosomonadales 1 0 120 family 2 2008790 Thiobacillus 1 2 919 120 genus 0 4 Thiobacillus denitrificans 36861 1 species 116 0 5 90627 Gallionellaceae 1 3 0 243 family 96 2 1 Gallionella 3 0 genus 122 0 119 species 370405 1 Gallionella capsiferriformans 314343 2 1 Sideroxydans 1 0 genus 118 Sideroxydans lithotrophicus 1 63745 species 117 0 Nitrosomonadaceae 1 12 206379 1939 family 0 7 1 0 genus 304 4 35798 Nitrosospira 1 1 35799 Nitrosospira briensis 0 species 103 species 109 0 Nitrosospira lacus 1288494 1 Nitrosospira multiformis 1 1231 91 species 0 1628 genus 10 0 Nitrosomonas 1 7 914 Nitrosomonas eutropha 1 916 212 species 0 353 species 0 Nitrosomonas communis 44574 1 Nitrosomonas ureae 1 44577 species 300 0 0 species 121 915 1 Nitrosomonas europaea 2609265 2 0 632 no rank 0 384 species 1 153948 Nitrosomonas sp. AL212 1 261292 Nitrosomonas sp. Is79A3 0 248 species family 237 0 4 2772226 genus 118 0 1 1 Sulfuricella 935200 2 0 species 117 649841 1 Sulfuricella denitrificans genus 119 2 0 1 Sulfuriferula 1778653 2 0 117 no rank 1 2637784 117 species 0 Sulfuriferula sp. AH1 1 1985873 4 0 326 family 5 2008793 Sterolibacteriaceae 1 175 genus 0 4 Sulfuritalea 1 2 1054211 Sulfuritalea hydrogenivorans 748811 1 species 171 0 Methyloversatilis 1 2 378210 147 genus 0 3 0 no rank 144 1 2639971 144 species 0 Methyloversatilis sp. RAC08 1 1842540 1 Methylophilaceae 32011 12 1663 family 0 16 2 16 Methylophilus 1 1 0 122 genus 2630143 1 0 no rank 121 1 1662285 Methylophilus sp. TWE2 0 121 species 451 genus 0 359407 2 Methylotenera mobilis 1 359408 167 species 0 284 species 0 Methylotenera versatilis 1 1055487 genus 87 0 1 404 Methylobacillus flagellatus 405 1 87 species 0 227 genus 6 0 1 Methylovorus 81682 3 266009 1 Methylovorus glucosotrophus 0 108 species 113 no rank 0 2634027 1 Methylovorus sp. MP688 887061 1 113 species 0 0 6 genus 760 3 1679002 Candidatus Methylopumilus 1 species 554 0 Candidatus Methylopumilus planktonicus 1 1581557 species 200 0 Candidatus Methylopumilus turicensis 1 1581680 Burkholderiales 1 228 80840 47977 order 0 438 117 0 family 23712 119060 84 1 Burkholderiaceae Polynucleobacter 1 4 44013 805 genus 0 7 Polynucleobacter necessarius 1 576610 189 species 0 0 species 237 1 1835254 Polynucleobacter duraquae Polynucleobacter asymbioticus 1 576611 species 372 0 0 121 genus 1 2571159 species 121 0 Paraburkholderia rhizoxinica 412963 1 43 0 2708 genus 12 1822464 Paraburkholderia 1 0 species 231 1 2026199 Paraburkholderia aromaticivorans Paraburkholderia fungorum 134537 1 species 201 0 0 species 352 75105 1 Paraburkholderia caribensis 0 species 223 169430 1 Paraburkholderia hospita 36873 1 Paraburkholderia xenovorans 0 species 243 0 species 192 948107 1 Paraburkholderia sprentiae 1 2615204 0 215 no rank Paraburkholderia sp. SOS3 1 1926494 species 215 0 Paraburkholderia terrae 311230 1 171 species 0 1 148447 Paraburkholderia phymatum 0 species 248 186 species 0 Paraburkholderia phenoliruptrix 1 252970 261302 1 Paraburkholderia phytofirmans 0 species 403 1 Cupriavidus 106589 9 2955 genus 0 63 0 594 species 1 119219 Cupriavidus metallidurans 475 species 0 Cupriavidus basilensis 1 68895 Cupriavidus gilardii 82541 1 species 180 0 Cupriavidus necator 106590 1 species 337 0 Cupriavidus sp. USMAA1020 1 367825 species 329 0 0 769 no rank 2640874 2 413 species 0 Cupriavidus sp. USMAA2-4 876364 1 Cupriavidus sp. USMAHM13 1389192 1 species 356 0 Cupriavidus pinatubonensis 248026 1 species 208 0 1 Pandoraea 93217 10 genus 2205 35 0 1 93220 Pandoraea pnomenusa 0 282 species 0 species 148 445709 1 Pandoraea thiooxydans 93221 1 Pandoraea pulmonicola 0 species 587 Pandoraea oxalativorans 1 573737 species 264 0 0 species 153 1 656179 Pandoraea faecigallinarum species 177 0 Pandoraea vervacti 1 656178 93222 1 Pandoraea sputorum 0 136 species Pandoraea apista 93218 1 species 147 0 0 276 species 93219 1 Pandoraea norimbergensis Burkholderia 1 41 32008 genus 13008 0 385 Burkholderia gladioli 1 28095 405 species 0 0 5635 species group 19 87882 1 1503054 Burkholderia stagnalis 0 166 species 246 species 0 Burkholderia stabilis 95485 1 Burkholderia diffusa 1 488732 112 species 0 Burkholderia ubonensis 101571 1 494 species 0 0 361 species 60552 1 Burkholderia vietnamiensis 0 211 species 488447 1 Burkholderia contaminans 488446 1 Burkholderia latens 0 238 species 0 species 146 1 488729 Burkholderia metallica 217 species 0 Burkholderia ambifaria 152480 1 species 154 0 Burkholderia pseudomultivorans 1207504 1 0 species 751 1 95486 Burkholderia cenocepacia species 87 0 Burkholderia territorii 1503055 1 species 956 0 Burkholderia cepacia 292 1 60550 1 Burkholderia pyrrocinia 0 122 species 152500 1 Burkholderia dolosa 0 species 161 0 species 168 1 488731 Burkholderia seminalis 0 171 species 265293 1 [Pseudomonas] mesoacidophila 1 482957 Burkholderia lata 0 518 species species 356 0 Burkholderia multivorans 87883 1 species 228 0 Burkholderia plantarii 1 41899 11 2613784 no rank 1884 0 0 species 234 1097668 1 Burkholderia sp. YI23 0 186 species 640512 1 Burkholderia sp. CCGE1003 0 201 species 1 1678678 Burkholderia sp. HB1 0 244 species 1 758796 Burkholderia sp. RPE67 Burkholderia sp. CCGE1001 1 640510 species 180 0 118 species 0 Burkholderia sp. PAMC 28687 1 1795874 0 species 147 1740163 1 Burkholderia sp. Bp7605 1 1740162 Burkholderia sp. Bp5365 0 137 species species 136 0 Burkholderia sp. PAMC 26561 1 1795043 0 species 146 1 1468409 Burkholderia sp. 2002721687 155 species 0 Burkholderia sp. KJ006 416344 1 450 species 0 Burkholderia glumae 1 337 111527 7 0 4021 species group Burkholderia oklahomensis 1 342113 283 species 0 438 species 0 Burkholderia thailandensis 1 57975 species 277 0 Burkholderia sp. MSMB0852 1 1637841 0 species 2155 28450 1 Burkholderia pseudomallei 0 247 species 1 1637831 Burkholderia sp. MSMB617WGS species 232 0 Burkholderia sp. MSMB0266 1637837 1 389 species 0 Burkholderia mallei 1 13373 Ralstonia 1 5 48736 genus 1603 20 0 Ralstonia insidiosa 1 190721 180 species 0 0 species 809 1 305 Ralstonia solanacearum 352 species 0 Ralstonia pickettii 329 1 1 105219 Ralstonia mannitolilytica 0 species 242 genus 190 0 1 1827195 species 190 0 Burkholderia sp. RPE64 1 758793 38 0 family 4571 75682 27 1 Oxalobacteraceae Herbaspirillum 1 6 963 1225 genus 0 20 2624150 1 0 no rank 178 178 species 0 Herbaspirillum sp. meg3 1 2025949 Herbaspirillum hiltneri 1 341045 347 species 0 80842 1 Herbaspirillum rubrisubalbicans 0 species 162 92645 1 Herbaspirillum frisingense 0 species 200 Herbaspirillum seropedicae 1 964 species 318 0 0 genus 261 2 303379 0 125 species 1809410 1 Herminiimonas arsenitoxidans 204773 1 Herminiimonas arsenicoxydans 0 species 136 1 Collimonas 202907 4 genus 788 0 13 0 188 species 1 279113 Collimonas pratensis 0 333 species 1 279058 Collimonas arenae 1 158899 Collimonas fungivorans 0 254 species 1 Janthinobacterium 29580 7 1110 genus 22 0 0 species 221 1 368607 Janthinobacterium svalbardensis no rank 692 0 2610881 4 Janthinobacterium sp. B9-8 1 1236179 species 199 0 1 1938606 Janthinobacterium sp. LM6 0 155 species 375286 1 Janthinobacterium sp. Marseille 0 species 122 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 216 species 0 Janthinobacterium agaricidamnosum 55508 1 species 175 0 0 97 genus 1 846 0 97 species 1 847 Oxalobacter formigenes genus 1052 17 0 Massilia 1 6 149698 212 species 0 Massilia putida 1 1141883 Massilia sp. ZMN-3 2072590 1 species 228 0 no rank 405 0 2609279 2 1707785 1 Massilia sp. WG5 0 species 204 species 201 0 Massilia sp. NR 4-1 1678028 1 Massilia sp. B2 1 2045208 190 species 0 0 51 family 7341 506 41 1 Alcaligenaceae 0 22 1916 genus 6 222 Achromobacter 1 0 355 species 1 217203 Achromobacter spanius 0 no rank 168 2626865 1 0 168 species 1 1758194 Achromobacter sp. AONIH1 Achromobacter xylosoxidans 1 85698 species 776 0 Achromobacter denitrificans 32002 1 402 species 0 Achromobacter insolitus 217204 1 193 species 0 517 17 1 Bordetella 0 70 2669 genus 1 463025 Bordetella bronchialis 0 species 187 112 species 0 Bordetella avium 1 521 103855 1 Bordetella hinzii 0 species 155 Bordetella genomosp. 8 1 1416806 species 189 0 0 species 136 1416803 1 Bordetella genomosp. 9 463024 1 Bordetella genomosp. 6 0 species 191 519 1 Bordetella parapertussis 0 213 species Bordetella petrii 94624 1 149 species 0 0 343 species 1 518 Bordetella bronchiseptica 0 151 species 1 463040 Bordetella genomosp. 13 species 123 0 Bordetella pseudohinzii 1 1331258 1 463014 Bordetella flabilis 0 species 151 1 520 Bordetella pertussis 0 species 184 113 species 0 Bordetella trematum 123899 1 35814 1 Bordetella holmesii 0 97 species 1 2630031 no rank 105 0 Bordetella sp. H567 1 1697043 species 105 0 0 5 283 genus 3 290425 Advenella 1 species 121 0 Advenella kashmirensis 1 310575 0 157 species 302406 1 Advenella mimigardefordensis 253 genus 0 1 1 Basilea 1472344 2 252 species 0 Basilea psittacipulmonis 1472345 1 1 305976 0 169 genus 0 169 no rank 1 2640016 species 169 0 Pusillimonas sp. T7-7 1007105 1 1 Alcaligenes 507 2 genus 476 1 0 species 475 0 Alcaligenes faecalis 511 1 359336 2 1 Castellaniella 0 6 genus 143 Castellaniella defragrans 1 75697 137 species 0 1 90243 genus 148 0 1 90245 Oligella urethralis 0 species 148 1 Orrella 1921582 2 genus 170 3 0 167 species 0 Orrella dioscoreae 1 1851544 29574 3 1 Taylorella 4 0 844 genus species 443 0 Taylorella asinigenitalis 1 84590 species 397 0 Taylorella equigenitalis 1 29575 1100891 1 0 219 genus Paenalcaligenes hominis 643674 1 species 219 0 0 274 no rank 2 80841 Burkholderiales bacterium YL45 1834205 1 168 species 0 species 106 0 Burkholderiales bacterium GJ-E10 1 1469502 Comamonadaceae 1 56 80864 family 9106 0 104 genus 332 0 1 1 Ramlibacter 174951 2 species 331 0 Ramlibacter tataouinensis 1 94132 107 genus 0 1 352450 Simplicispira sp. SC1-8 1 2109915 species 107 0 1 2678886 0 129 genus Melaminivora sp. SC2-7 2116657 1 129 species 0 1 Diaphorobacter 238749 2 genus 114 0 2 1 1546149 Diaphorobacter polyhydroxybutyrativorans 0 112 species 9 12916 Acidovorax 1 41 0 genus 1162 0 154 species 80869 1 Acidovorax citrulli 0 species 113 1 721785 Acidovorax ebreus species 210 0 Acidovorax avenae 1 80867 4 2684926 544 no rank 0 101 species 0 Acidovorax sp. JS42 1 232721 1842533 1 Acidovorax sp. RAC01 0 145 species Acidovorax sp. T1 1858609 1 species 182 0 Acidovorax sp. KKS102 358220 1 116 species 0 553814 1 Acidovorax sp. NA3 0 species 100 0 1 129 genus 1436289 2 1 Candidatus Symbiobacter Candidatus Symbiobacter mobilis 1 1436290 species 128 0 47420 4 1 Hydrogenophaga 0 4 genus 504 2610897 2 no rank 335 0 184 species 0 Hydrogenophaga sp. RAC07 1 1842537 795665 1 Hydrogenophaga sp. PBC 0 species 151 165 species 0 Hydrogenophaga crassostreae 1763535 1 28065 4 0 584 genus Rhodoferax antarcticus 81479 1 species 148 0 1842727 1 Rhodoferax koreense 0 species 199 0 120 species 192843 1 Rhodoferax ferrireducens Rhodoferax saidenbachensis 1 1484693 species 117 0 3 0 genus 334 2 364316 Verminephrobacter 1 1 364317 Verminephrobacter eiseniae 0 331 species 3 219181 Ottowia 1 1 0 genus 229 108 no rank 0 1 2645081 1658672 1 Ottowia sp. oral taxon 894 0 species 108 species 120 0 Ottowia sp. KADR8-3 2109914 1 2 1649468 Melaminivora 1 5 0 genus 185 0 no rank 180 1 2641902 0 species 180 2109913 1 Melaminivora sp. SC2-9 3 665874 Limnohabitans 1 0 1 genus 256 no rank 255 0 2 2626134 Limnohabitans sp. 63ED37-2 1 1678128 species 143 0 112 species 0 Limnohabitans sp. 103DPR2 1 1678129 0 277 genus 2490452 2 Comamonadaceae bacterium B1 1 1458426 species 138 0 139 species 0 Comamonadaceae bacterium A1 1 1458425 genus 804 0 10 Comamonas 1 4 283 0 species 287 1 1082851 Comamonas serinivorans Comamonas testosteroni 1 285 species 304 0 0 species 203 1 225992 Comamonas kerstersii genus 1748 0 31 1 Variovorax 34072 5 0 no rank 522 2 663243 Variovorax sp. PAMC 28711 1795631 1 246 species 0 0 276 species 1 2126319 Variovorax sp. PMC12 1 34073 Variovorax paradoxus 0 species 948 Variovorax boronicumulans 436515 1 species 247 0 1 201096 0 166 genus Alicycliphilus denitrificans 1 179636 166 species 0 3 52972 Polaromonas 1 7 0 992 genus 2638319 1 no rank 745 0 0 745 species 1 296591 Polaromonas sp. JS666 216465 1 Polaromonas naphthalenivorans 0 240 species 950 genus 30 0 1 Delftia 80865 5 80866 1 Delftia acidovorans 0 species 217 no rank 481 0 2613839 2 0 species 264 742013 1 Delftia sp. Cs1-4 0 217 species 1920191 1 Delftia sp. HK171 species 222 0 Delftia tsuruhatensis 1 180282 224471 17 2535 no rank 0 316612 2 1 Methylibium 11 0 genus 181 species 170 0 Methylibium petroleiphilum 105560 1 2 32012 Thiomonas 1 0 7 genus 215 0 208 species 926 1 Thiomonas intermedia 28067 2 1 Rubrivivax 12 0 genus 249 species 237 0 Rubrivivax gelatinosus 28068 1 65047 2 1 Mitsuaria 0 8 genus 227 1 2648776 0 219 no rank 1 1658665 Mitsuaria sp. 7 0 species 219 5 0 genus 216 212743 2 1 Rhizobacter 0 species 211 946333 1 Rhizobacter gummiphilus 1 413882 [Polyangium] brachysporum 0 species 329 Leptothrix 1 2 88 genus 224 14 0 1 34029 Leptothrix cholodnii 0 species 210 318147 2 1 Paucibacter 2 0 genus 227 2642959 1 0 225 no rank 0 225 species 1768242 1 Paucibacter sp. KCTC 42545 93681 2 1 Roseateles 0 3 667 genus 76731 1 Roseateles depolymerans 0 species 664 0 3594 no rank 11 119066 1 1381133 489 genus 0 species 489 0 Candidatus Profftella armatura 1 669502 2 0 genus 169 2 327159 Candidatus Accumulibacter 1 327160 1 Candidatus Accumulibacter phosphatis 0 167 species 33055 6 1 Kinetoplastibacterium 0 20 2785 genus Candidatus Kinetoplastibacterium desouzaii 1 994692 species 714 0 Kinetoplastibacterium blastocrithidii 233181 1 species 424 0 0 448 species 994695 1 Candidatus Kinetoplastibacterium galatii species 517 0 Candidatus Kinetoplastibacterium oncopeltii 1 994696 Candidatus Kinetoplastibacterium crithidii 1 33056 species 662 0 0 genus 29 189384 1 1 189385 Candidatus Tremblaya princeps 0 species 29 1 1301080 0 122 genus species 122 0 Candidatus Nasuia deltocephalinicola 1 1160784 order 2298 0 32 1 Rhodocyclales 206389 20 0 137 family 2008795 1 137 genus 0 1 73029 0 137 species 259537 1 Dechloromonas aromatica 0 12 family 429 75787 6 1 Rhodocyclaceae 0 124 no rank 75788 1 124 species 0 Rhodocyclaceae bacterium 1898103 1 Aromatoleum 1 2 551759 genus 170 6 0 551760 1 Aromatoleum aromaticum 0 species 164 146937 2 1 Azospira 3 0 123 genus Azospira oryzae 146939 1 120 species 0 Zoogloeaceae 1 12 2008794 1700 family 34 0 Azoarcus 1 5 12960 genus 788 0 22 species 157 0 Azoarcus olearius 418699 1 Azoarcus sp. SY39 1 2067960 207 species 0 no rank 402 0 2629479 2 species 173 0 Azoarcus sp. KH32C 748247 1 229 species 0 Azoarcus sp. CIB 1 198107 32 0 genus 878 6 33057 Thauera 1 Thauera chlorobenzoica 96773 1 173 species 0 0 372 no rank 2609274 2 197 species 0 Thauera sp. MZ1T 1 85643 Thauera sp. K11 2005884 1 species 175 0 0 species 137 59405 1 Thauera aromatica species 164 0 Thauera humireducens 1134435 1 0 subphylum 47535 68525 188 30410 class 0 33 1 Epsilonproteobacteria 29547 72 235899 5 order 911 0 2 2795691 0 family 210 genus 210 4 0 1 Nitratiruptor 269258 2 2624044 1 no rank 206 0 species 206 0 Nitratiruptor sp. SB155-2 387092 1 3 224467 Nautiliaceae 1 0 4 family 701 2 191291 Nautilia 1 1 0 697 genus Nautilia profundicola 1 244787 species 696 0 29466 order 51 0 1 Campylobacterales 213849 66 1 0 family 3777 14 72293 Helicobacteraceae 1 843 1 0 genus 82 844 1 Wolinella succinogenes 0 82 species 209 12 1 Helicobacter 11 0 3694 genus 32025 1 Helicobacter hepaticus 0 285 species Helicobacter pylori 210 1 1665 species 0 0 species 124 1 212 Helicobacter acinonychis 0 species 83 1 214 Helicobacter felis 1 37372 Helicobacter bilis 0 274 species 1 213 Helicobacter cinaedi 0 species 208 species 185 0 Helicobacter typhlonius 1 76936 Helicobacter mustelae 1 217 species 149 0 species 141 0 Helicobacter himalayensis 1 1591088 no rank 160 0 2593540 1 0 160 species 222136 1 Helicobacter sp. MIT 01-6242 409 species 0 Helicobacter cetorum 138563 1 24213 family 50 0 1 Campylobacteraceae 72294 41 2321108 5 6684 no rank 0 0 40 3409 genus 3 28196 Arcobacter 1 species 1318 0 Arcobacter nitrofigilis 1 28199 1 28197 Arcobacter butzleri 0 2051 species 0 genus 1675 1 2321187 1850254 1 Arcobacter sp. LPB0137 0 1675 species 2321207 1 0 no rank 1600 0 1600 species 944547 1 Arcobacter sp. L genus 15558 0 120 1 Campylobacter 194 26 0 1991 no rank 2593542 4 476 species 0 Campylobacter sp. RM12175 1 1660076 Campylobacter sp. RM16704 1 1500960 species 745 0 Campylobacter sp. RM8964 1660074 1 462 species 0 Campylobacter sp. RM6137 1 1660073 species 308 0 species 619 0 Campylobacter fetus 1 196 0 species 1733 201 1 Campylobacter lari 198 1 Campylobacter hyointestinalis 0 species 524 1 488546 Campylobacter peloridis 0 573 species species 345 0 Campylobacter avium 1 522485 species 410 0 Campylobacter iguaniorum 1 1244531 0 1330 species 197 1 Campylobacter jejuni Campylobacter ureolyticus 1 827 745 species 0 Campylobacter hominis 1 76517 406 species 0 1 75658 Campylobacter lanienae 0 species 288 Campylobacter concisus 199 1 species 363 0 1 28898 Campylobacter helveticus 0 280 species Campylobacter insulaenigrae 260714 1 731 species 0 1 1965231 Campylobacter pinnipediorum 0 species 937 Campylobacter sputorum 206 1 species 1062 0 1 1031542 Campylobacter volucris 0 680 species species 1106 0 Campylobacter coli 195 1 1 374106 Campylobacter cuniculorum 0 species 501 Campylobacter subantarcticus 497724 1 671 species 0 0 species 71 1 200 Campylobacter curvus 0 72 species 824 1 Campylobacter gracilis Sulfurospirillum 1 9 57665 genus 1921 31 0 3 2618290 0 902 no rank 0 304 species 1986224 1 Sulfurospirillum sp. SL2-1 1 220622 Sulfurospirillum sp. JPD-1 0 247 species 1 1581011 Sulfurospirillum sp. UCH001 0 351 species Sulfurospirillum barnesii 44674 1 243 species 0 65553 1 Sulfurospirillum deleyianum 0 247 species 133 species 0 Sulfurospirillum cavolei 366522 1 0 194 species 66821 1 Sulfurospirillum multivorans Sulfurospirillum halorespirans 1 194424 species 171 0 family 526 0 2771472 5 351 genus 12 0 Sulfurovum 1 3 265570 0 species 165 206403 1 Sulfurovum lithotrophicum no rank 174 0 1 2646778 0 species 174 387093 1 Sulfurovum sp. NBC37-1 269260 2 1 Nitratifractor 0 1 175 genus species 174 0 Nitratifractor salsuginis 269261 1 2771471 5 family 899 0 286130 2 1 Sulfuricurvum 1 0 102 genus 0 101 species 1 148813 Sulfuricurvum kujiense genus 797 0 2 Sulfurimonas 1 3 202746 362 species 0 Sulfurimonas autotrophica 202747 1 species 433 0 Sulfurimonas denitrificans 39766 1 class 17125 29 0 1 Deltaproteobacteria 28221 116 940 order 1 0 1 Desulfurellales 213113 4 Desulfurellaceae 1 3 117942 939 family 0 2 33001 1 genus 655 0 655 species 0 Desulfurella acetivorans 33002 1 282 genus 0 1 84404 species 282 0 Hippea maritima 84405 1 order 2394 19 0 Desulfobacterales 1 18 213118 0 5 family 744 213121 7 1 Desulfobulbaceae 1 53318 genus 276 0 species 276 0 Desulfocapsa sulfexigens 65555 1 427922 1 0 genus 113 Desulfurivibrio alkaliphilus 427923 1 113 species 0 genus 107 3 0 Desulfobulbus 1 2 893 104 species 0 Desulfobulbus sp. ORNL 1986146 1 2 109168 Desulfotalea 1 0 5 243 genus Desulfotalea psychrophila 84980 1 238 species 0 0 5 family 1631 213119 10 1 Desulfobacteraceae genus 557 5 0 1 Desulfatibacillum 218207 2 Desulfatibacillum alkenivorans 1 259354 552 species 0 Desulfococcus 1 3 896 371 genus 6 0 0 species 151 897 1 Desulfococcus multivorans 214 species 0 Desulfococcus oleovorans 1 181663 508 genus 7 0 1 Desulfobacula 28222 2 Desulfobacula toluolica 1 28223 species 501 0 2 2295 Desulfobacterium 1 3 0 genus 190 0 species 187 1 2296 Desulfobacterium autotrophicum 2 0 132 order 453227 3 1 Desulfarculales 2 453228 0 130 family 1 Desulfarculus 453229 2 genus 130 0 1 0 species 129 1 453230 Desulfarculus baarsii Syntrophobacterales 1 8 213462 540 order 5 0 136 family 0 1 1 Syntrophobacteraceae 213465 3 1 Syntrophobacter 29526 2 135 genus 0 4 131 species 0 Syntrophobacter fumaroxidans 119484 1 213468 4 1 Syntrophaceae 4 0 399 family 43773 1 0 genus 143 316277 1 Syntrophus aciditrophicus 0 species 143 1 2357 0 genus 144 144 species 0 Desulfomonile tiedjei 2358 1 1 60892 0 108 genus 0 species 108 1 60893 Desulfobacca acetoxidans 23 213115 Desulfovibrionales 1 38 0 2741 order Desulfovibrionaceae 1 17 194924 2369 family 0 13 Pseudodesulfovibrio 1 4 2035811 355 genus 0 3 Pseudodesulfovibrio profundus 1 57320 92 species 0 species 151 0 Pseudodesulfovibrio indicus 1716143 1 species 109 0 Pseudodesulfovibrio aespoeensis 182210 1 1 41707 0 576 genus 576 species 0 Lawsonia intracellularis 29546 1 0 106 genus 2582840 1 106 species 0 Desulfovibrio africanus 1 873 239 genus 0 2794998 1 species 239 0 Desulfovibrio salexigens 880 1 genus 1080 17 0 1 Desulfovibrio 872 9 0 73 species 1 901 Desulfovibrio piger 113 species 0 Desulfovibrio alaskensis 1 58180 0 species 176 1 876 Desulfovibrio desulfuricans 0 species 335 1 881 Desulfovibrio vulgaris 2593640 1 78 no rank 0 0 species 78 1 631220 Desulfovibrio sp. G11 1 1725232 Candidatus Desulfovibrio trichonymphae 0 43 species Desulfovibrio magneticus 1 184917 species 176 0 1 44742 Desulfovibrio fairfieldensis 0 69 species family 114 0 213117 1 45662 1 genus 114 0 species 114 0 Desulfohalobium retbaense 1 45663 213116 4 1 Desulfomicrobiaceae 1 0 family 220 1 Desulfomicrobium 898 3 219 genus 2 0 0 86 species 132132 1 Desulfomicrobium orale 0 species 131 1 899 Desulfomicrobium baculatum 23 69541 Desulfuromonadales 1 39 0 order 2801 family 1855 12 0 1 Geobacteraceae 213422 14 392332 2 1 Geoalkalibacter 0 4 155 genus species 151 0 Geoalkalibacter subterraneus 1 483547 28231 11 1 Geobacter 24 0 1688 genus 1 1340425 Geobacter anodireducens 0 species 121 146 species 0 Geobacter daltonii 1203471 1 116 species 0 Geobacter bemidjiensis 225194 1 Geobacter lovleyi 313985 1 119 species 0 Geobacter sulfurreducens 35554 1 107 species 0 Geobacter metallireducens 1 28232 199 species 0 179 species 0 Geobacter pickeringii 1 345632 324 species 0 Geobacter uraniireducens 351604 1 0 no rank 353 2 2627627 0 231 species 443143 1 Geobacter sp. M18 443144 1 Geobacter sp. M21 0 species 122 family 907 13 0 Desulfuromonadaceae 1 8 213421 9 0 genus 476 5 18 Pelobacter 1 Pelobacter carbinolicus 19 1 species 126 0 no rank 104 0 1 2620299 Pelobacter sp. SFB93 1842532 1 species 104 0 124 species 0 Pelobacter propionicus 1 29543 0 113 species 29542 1 Pelobacter acetylenicus 418 genus 0 890 2 1 2614637 no rank 180 0 Desulfuromonas sp. DDH964 1823759 1 species 180 0 Desulfuromonas soudanensis 1603606 1 species 238 0 Myxococcales 1 36 29 7548 order 0 82 0 suborder 4445 25 80811 0 2 212 family 1524213 3 1 Vulgatibacteraceae 210 genus 4 0 1 Vulgatibacter 1524214 2 206 species 0 Vulgatibacter incomptus 1 1391653 1 Anaeromyxobacteraceae 1524215 5 894 family 0 2 0 24 892 genus 161492 4 1 Anaeromyxobacter 0 467 no rank 2620896 2 Anaeromyxobacter sp. K 1 447217 232 species 0 0 species 235 404589 1 Anaeromyxobacter sp. Fw109-5 1 161493 Anaeromyxobacter dehalogenans 0 401 species family 1880 0 8 1 Myxococcaceae 31 9 558 genus 16 0 Corallococcus 1 3 83461 species 238 0 Myxococcus macrosporus 1 35 1 184914 Corallococcus coralloides 0 species 304 1 Myxococcus 32 5 genus 1314 0 41 263 species 0 Myxococcus hansupus 1 1297742 33 1 Myxococcus fulvus 0 526 species 0 224 species 34 1 Myxococcus xanthus 0 260 species 83455 1 Myxococcus stipitatus 0 19 1459 family 8 39 Archangiaceae 1 1 40 0 216 genus Stigmatella aurantiaca 41 1 216 species 0 3 0 616 genus 2 47 Archangium 1 1 48 Archangium gephyra 0 613 species genus 272 7 0 Melittangium 1 2 44 83453 1 Melittangium boletus 0 265 species Cystobacter 1 2 42 genus 336 0 7 1 43 Cystobacter fuscus 0 species 329 suborder 555 0 3 224462 555 family 0 4 1 Kofleriaceae 224464 3 genus 551 0 5 Haliangium 1 2 162027 0 546 species 1 80816 Haliangium ochraceum 7 80812 0 suborder 2466 family 1972 0 2 1 Polyangiaceae 49 4 2 39643 Sorangium 1 0 7 genus 1550 1 56 Sorangium cellulosum 0 species 1543 420 genus 0 50 1 52 1 Chondromyces crocatus 0 species 420 494 family 0 3 Sandaracinaceae 1 3 1055686 491 genus 1 0 Sandaracinus 1 2 1055688 0 490 species 927083 1 Sandaracinus amylolyticus 1807140 6 448 class 0 225057 6 1 Acidithiobacillales 0 8 448 order 1 Acidithiobacillaceae 225058 5 440 family 6 0 10 0 genus 434 4 119977 Acidithiobacillus 1 119 species 0 Acidithiobacillus ferrooxidans 920 1 1 160808 Acidithiobacillus ferrivorans 0 species 157 33059 1 Acidithiobacillus caldus 0 148 species 0 7 1973 class 1553900 12 1 Oligoflexia 5 213481 Bdellovibrionales 1 0 11 856 order family 845 1 0 1 Bdellovibrionaceae 213483 4 3 0 844 genus 3 958 Bdellovibrio 1 species 279 0 Bdellovibrio exovorus 1 453816 0 562 species 1 959 Bdellovibrio bacteriovorus 9 0 1110 order 6 2024979 Bacteriovoracales 1 0 family 298 2 263369 1 Bacteriovorax 146784 2 298 genus 0 9 960 1 Bacteriovorax stolpii 0 289 species Halobacteriovoraceae 1 3 1652132 family 803 3 0 1652133 2 1 Halobacteriovorax 2 0 genus 800 1 97084 Halobacteriovorax marinus 0 798 species 0 7 phylum 840 10 74152 Elusimicrobia 1 0 1 class 185 2 641853 Elusimicrobia 1 0 order 184 1 641854 184 family 0 641876 1 1 423604 0 genus 184 184 species 0 Elusimicrobium minutum 423605 1 0 no rank 221 1 99260 0 221 species 1 167965 uncultured Termite group 1 bacterium class 427 0 1 1 Endomicrobia 447830 6 1 0 order 426 5 1783344 Endomicrobiales 1 1 Endomicrobiaceae 1783343 4 family 425 3 0 0 2 422 genus 1408194 3 1 Endomicrobium 211 species 0 Candidatus Endomicrobium trichonymphae 1408204 1 species 209 0 Endomicrobium proavitum 1408281 1 0 phylum 440 8 508458 649775 8 1 Synergistia 2 0 class 440 7 649776 Synergistales 1 2 0 order 438 649777 6 1 Synergistaceae 1 0 family 436 49894 1 0 101 genus Acetomicrobium mobile 97477 1 101 species 0 81461 1 0 genus 55 0 species 55 81462 1 Thermanaerovibrio acidaminovorans 508459 1 88 genus 0 88 species 0 Cloacibacillus porcorum 1 1197717 0 92 genus 1 336260 1 336261 Thermovirga lienii 0 92 species 81466 1 genus 99 0 0 99 species 81468 1 Aminobacterium colombiense 150 phylum 0 2 200938 118001 2 0 class 150 2 189769 order 150 0 150 family 4 0 Chrysiogenaceae 1 2 189770 1 393029 0 genus 146 Desulfurispirillum indicum 936456 1 species 146 0 0 245 clade 2498710 3 67814 3 phylum 245 0 0 4 245 class 3 693071 Caldisericia 1 2 693072 0 order 241 0 241 family 693073 2 693074 2 1 Caldisericum 0 1 241 genus 1 693075 Caldisericum exile 0 species 240 200930 11 phylum 2107 0 class 2107 5 0 Deferribacteres 1 11 68337 Deferribacterales 1 10 191393 order 2102 0 4 191394 9 1 Deferribacteraceae 0 4 family 2098 genus 401 0 1 1 Calditerrivibrio 545865 2 1 477976 Calditerrivibrio nitroreducens 0 400 species 1 Flexistipes 2351 2 genus 441 1 0 Flexistipes sinusarabici 1 2352 440 species 0 53572 2 1 Deferribacter 0 2 1024 genus 197162 1 Deferribacter desulfuricans 0 1022 species 117999 2 1 Denitrovibrio 0 3 genus 228 1 118000 Denitrovibrio acetiphilus 0 species 225 0 phylum 1406 200940 8 8 67799 Thermodesulfobacteria 1 0 1 1406 class 1405 order 1 0 1 Thermodesulfobacteriales 188710 7 188711 6 1 Thermodesulfobacteriaceae 9 0 1404 family 1 241192 177 genus 0 177 species 0 Thermodesulfatator indicus 171695 1 3 1740 Thermodesulfobacterium 1 0 1 genus 976 1741 1 Thermodesulfobacterium commune 0 species 264 1 1295609 Thermodesulfobacterium geofontis 0 711 species 444090 1 0 genus 242 1 1653476 Caldimicrobium thiodismutans 0 242 species 0 132 phylum 2138240 3 3 2138243 Coprothermobacteria 1 1 0 class 132 2 2138246 order 131 0 2138247 2 0 131 family 2 68335 Coprothermobacter 1 0 1 131 genus species 130 0 Coprothermobacter proteolyticus 1 35786 0 1 0 name