members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 2943409 30 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4256 4513 250 superkingdom 0 17077 2157 1783276 0 19 clade 1 1 phylum 0 19 1801631 19 0 2490204 genus 1 Candidatus Micrarchaeota archaeon Mia14 1 species 1920749 0 19 14228 0 28890 phylum 203 2290931 7159 0 clade 98 53 class Halobacteria 4142 0 183963 7 1 0 1726 1644060 6 1 order 16 Natrialbales Natrialbaceae family 15 1644061 1720 0 1 8 73 0 353799 1 genus Halostagnicola larsenii 1 species 353800 73 0 85 0 1269201 1 genus 1 no rank 2621923 85 0 0 85 1333523 species 1 Salinarchaeum sp. Harcht-Bsk1 387342 121 0 genus 1 387343 0 121 Halopiger xanaduensis 1 species genus 1 0 89 29287 Natronococcus occultus species 1 29288 0 89 63742 0 720 1 1 Natrialba 2 genus 13769 719 0 Natrialba magadii 1 species 4 1 0 157 203193 genus 2 Halobiforma 229731 153 0 Halobiforma lacisalsi species 1 Natronobacterium genus 2 1 1 2256 0 70 44930 69 0 Natronobacterium gregoryi 1 species genus 2 238 0 121871 Haloterrigena turkmenica species 1 62320 93 0 1 species Haloterrigena daqingensis 0 145 588898 2 genus 0 159 88723 Natrinema pellirubrum species 1 69525 0 99 1 no rank 2622230 0 60 0 60 406552 1 species Natrinema sp. J7-2 2235 0 899 1 12 Halobacteriales 23 order 14 family Haloarculaceae 0 513 1963268 2 1 1 2 146825 0 72 Halorhabdus 3 genus 146826 0 33 Halorhabdus utahensis 1 species 37 0 430914 1 species Halorhabdus tiamatea 1 1 222 0 2237 genus 5 Haloarcula 2624677 60 0 no rank 1 species 1 Haloarcula sp. CBA1115 0 60 1592728 species 1 Haloarcula taiwanensis 0 53 1932004 Haloarcula marismortui species 1 2238 47 0 species 1 Haloarcula hispanica 0 61 51589 64 0 1073987 genus 1 2648975 0 64 no rank 1 Halorientalis sp. IM1011 1 species 1932360 64 0 1 genus 0 59 203135 Halomicrobium mukohataei 1 species 57705 0 59 63743 0 94 1 2 Natronomonas 3 genus 1 species Natronomonas moolapensis 46 0 416273 2257 0 46 Natronomonas pharaonis species 1 0 374 2236 1 1 8 family Halobacteriaceae Halobacterium genus 4 1 10 2239 0 258 2668073 0 80 1 no rank 0 80 751944 species 1 Halobacterium sp. DL1 1 species Halobacterium salinarum 0 63 2242 0 105 1407499 species 1 Halobacterium hubeiense 59 0 332246 genus 1 59 0 413810 1 species Halalkalicoccus jeotgali 1656823 34 0 1 genus Halanaeroarchaeum sulfurireducens 1 species 1604004 34 0 1 genus 0 22 1980514 22 0 1873524 1 species Halodesulfurarchaeum formicicum 1 7 1644055 1510 0 Haloferacales order 13 no rank 1 63 0 2678336 species 1 halophilic archaeon DL31 63 0 756883 0 370 1963271 family 4 2 genus 56688 173 0 2247 0 82 Halorubrum lacusprofundi 1 species 29284 91 0 Halorubrum trapanicum species 1 genus 1 1644057 0 128 1 species Salinigranum rubrum 0 128 755307 0 69 1209988 genus 1 1048396 69 0 Halopenitus persicus 1 species Haloferacaceae 7 family 1644056 1070 0 1 9 genus 1 60846 0 48 1 species Halogeometricum borinquense 0 48 60847 genus 1 0 666 293431 293091 666 0 Haloquadratum walsbyi species 1 2251 0 347 1 7 Haloferax 4 genus Haloferax mediterranei species 1 2252 76 0 0 134 35746 species 1 Haloferax gibbonsii 2246 130 0 Haloferax volcanii species 1 45 class 224756 3017 0 2191 442 0 order 17 0 142 1198451 3 1 6 family Methanoregulaceae 1 1 475087 50 0 Methanosphaerula genus 2 49 0 475088 1 species Methanosphaerula palustris genus 3 Methanoregula 89 0 395331 1 1 Methanoregula formicica 1 species 882104 0 24 Methanoregula boonei species 1 358766 0 64 196137 58 0 family 2 Methanospirillum 2 genus 2202 0 58 1 3 Methanospirillum hungatei species 1 2203 0 55 2 family 88404 0 42 Methanocorpusculum 2 genus 1 1 2192 42 0 Methanocorpusculum labreanum 1 species 83984 0 41 family 7 Methanomicrobiaceae 0 200 2194 2 1 Methanolacinia genus 2 230355 47 0 1 2 1 species Methanolacinia petrolearia 0 45 54120 Methanoculleus 4 genus 1 5 45989 151 0 species 1 Methanoculleus marisnigri 0 67 2198 2619537 0 38 1 no rank 0 38 86622 1 species Methanoculleus sp. MAB1 83986 41 0 Methanoculleus bourgensis 1 species 94695 0 2463 25 order 2206 2312 0 1 2 Methanosarcinaceae 22 family 2220 0 60 genus 1 420950 0 60 Methanolobus psychrophilus 1 species genus 1 101191 0 54 0 54 101192 1 species Methanomethylovorans hollandica 2 genus 199 0 2225 species 1 Methanococcoides burtonii 96 0 29291 1 species Methanococcoides methylutens 0 103 2226 1 genus 0 169 2321 Methanohalobium evestigatum species 1 2322 0 169 158 0 2175 genus 2 1 species Methanohalophilus mahii 0 82 2176 Methanohalophilus halophilus species 1 2177 0 76 196136 0 106 1 genus 106 0 39669 species 1 Methanosalsum zhilinae Methanosarcina genus 13 2207 1564 0 1 3 2210 97 0 Methanosarcina thermophila species 1 0 384 2644672 4 no rank species 1 Methanosarcina sp. MTP4 59 0 1434100 1434099 144 0 Methanosarcina sp. Kolksee 1 species 1434102 0 87 Methanosarcina sp. WH1 1 species 1434103 94 0 Methanosarcina sp. WWM596 1 species 2215 0 144 Methanosarcina vacuolata species 1 species 1 Methanosarcina horonobensis 0 104 418008 170861 0 81 Methanosarcina lacustris 1 species species 1 Methanosarcina siciliae 150 0 38027 2208 361 0 Methanosarcina barkeri species 1 Methanosarcina acetivorans species 1 2214 90 0 2209 150 0 Methanosarcina mazei species 1 family 3 0 151 143067 3 genus Methanothrix 2 1 151 0 2222 66 0 301375 1 species Methanosaeta harundinacea 2223 83 0 Methanothrix soehngenii 1 species 3 order 0 112 570264 3 family 0 112 570265 1 5 570266 0 112 Methanocella 3 genus species 1 Methanocella conradii 0 28 1175444 1175445 79 0 Methanocella arvoryzae 1 species 0 4735 2283794 40 clade class 24 2322 0 183925 2158 2322 0 1 2 Methanobacteriales order 24 188 0 2178 1 family genus 1 2179 188 0 188 0 2180 1 species Methanothermus fervidus 2159 0 2132 1 1 Methanobacteriaceae family 22 0 616 2160 3 1 genus 8 Methanobacterium species 1 Methanobacterium congolense 95 0 118062 2162 98 0 Methanobacterium formicicum 1 species 877455 0 131 Methanobacterium lacus 1 species species 1 Methanobacterium subterraneum 67 0 59277 103 0 2627676 2 no rank 1379702 0 55 Methanobacterium sp. MB1 species 1 48 0 1911685 species 1 Methanobacterium sp. MZ-A1 species 1 Methanobacterium paludis 0 119 868131 genus 5 Methanothermobacter 116 0 145260 3 1 no rank 1 0 26 2631116 Methanothermobacter sp. CaT2 species 1 866790 26 0 Methanothermobacter marburgensis 1 species 145263 0 40 23 0 145262 species 1 Methanothermobacter thermautotrophicus Methanothermobacter wolfeii 1 species 145261 24 0 6 genus 2172 0 1144 244 0 2173 1 species Methanobrevibacter smithii 230361 185 0 Methanobrevibacter millerae species 1 83816 132 0 Methanobrevibacter ruminantium species 1 Methanobrevibacter olleyae 1 species 294671 0 272 0 311 2638681 2 no rank species 1 Methanobrevibacter sp. YE315 0 148 1609968 224719 0 163 Methanobrevibacter sp. AbM4 species 1 Methanosphaera 2 genus 1 1 2316 0 255 2317 254 0 Methanosphaera stadtmanae species 1 183939 0 2413 class 16 0 2413 2182 3 1 16 order Methanococcales Methanocaldococcaceae family 9 196117 1018 0 1 3 genus 1 196119 133 0 133 0 2189 species 1 Methanotorris igneus Methanocaldococcus 7 genus 1 8 196118 0 882 0 133 2190 1 species Methanocaldococcus jannaschii species 1 Methanocaldococcus fervens 146 0 83171 species 1 Methanocaldococcus infernus 104 0 67760 73913 140 0 Methanocaldococcus vulcanius species 1 1 no rank 2641196 162 0 1 species Methanocaldococcus sp. FS406-22 0 162 644281 species 1 Methanocaldococcus bathoardescens 189 0 1301915 6 family 1392 0 2183 Methanococcus 5 genus 2184 0 1257 1 3 Methanococcus aeolicus species 1 42879 0 168 2188 274 0 Methanococcus voltae 1 species 0 634 39152 1 species Methanococcus maripaludis 2187 178 0 Methanococcus vannielii 1 species 135 0 155862 genus 1 Methanothermococcus okinawensis 1 species 155863 135 0 8 class 183980 0 259 8 order 0 259 2231 8 family Archaeoglobaceae 4 1 0 259 2232 genus 2 50 0 190818 Geoglobus acetivorans species 1 565033 0 30 1 species Geoglobus ahangari 0 20 113653 44 0 54260 1 genus 54261 0 44 Ferroglobus placidus 1 species 0 161 2233 4 genus Archaeoglobus sulfaticallidus 1 species 1316941 34 0 species 1 Archaeoglobus profundus 0 60 84156 species 1 Archaeoglobus fulgidus 33 0 2234 1 species Archaeoglobus veneficus 34 0 58290 19 clade 0 985 2283796 clade 3 1803510 130 0 Aciduliprofundum genus 3 379546 130 0 1 3 73 0 379547 species 1 Aciduliprofundum boonei 0 54 2633939 1 no rank 0 54 673860 species 1 Aciduliprofundum sp. MAR08-339 0 855 183967 16 class 2301 494 0 10 order 1747776 74 0 family 2 Cuniculiplasma genus 2 1 1 1747777 74 0 Cuniculiplasma divulgatum species 1 1673428 73 0 46630 91 0 family 2 1 4 46631 0 91 Picrophilus genus 2 82076 0 87 Picrophilus torridus 1 species family 2 146 0 90142 2 genus 74968 146 0 72 0 97393 species 1 Ferroplasma acidarmanus 1 species Ferroplasma acidiphilum 0 74 74969 family 3 46659 99 0 genus 3 Thermoplasma 4 1 99 0 2302 Thermoplasma volcanium 1 species 50339 47 0 0 48 2303 species 1 Thermoplasma acidophilum 1 no rank 1919231 0 84 Thermoplasmatales archaeon BRNA1 1 species 1054217 0 84 1 no rank 0 72 1234666 1495144 0 72 methanogenic archaeon ISO4-H5 1 species 5 order 289 0 1235850 0 207 1577788 9 1 4 family Methanomassiliicoccaceae 1080709 123 0 1 1 Methanomassiliicoccus 2 genus Candidatus Methanomassiliicoccus intestinalis species 1 1406512 122 0 1 genus 1607807 0 75 1577791 75 0 Candidatus Methanoplasma termitum 1 species family 1 82 0 2517203 0 82 1291539 genus 1 82 0 1291540 species 1 Candidatus Methanomethylophilus alvus 183968 1090 0 38 class 1090 0 2258 38 order 1 2 2259 1090 0 Thermococcaceae 38 family genus 1 0 55 83867 1 species Palaeococcus pacificus 55 0 971279 251 0 2260 genus 7 species 1 Pyrococcus yayanosii 19 0 1008460 species 1 Pyrococcus kukulkanii 24 0 1609559 Pyrococcus horikoshii species 1 53953 45 0 Pyrococcus abyssi 1 species 29292 0 30 54 0 2261 species 1 Pyrococcus furiosus 2629106 0 79 no rank 2 species 1 Pyrococcus sp. ST04 0 59 1183377 0 20 342949 species 1 Pyrococcus sp. NA2 29 genus Thermococcus 782 0 2263 21 1 Thermococcus litoralis 1 species 2265 0 55 species 1 Thermococcus gorgonarius 5 0 71997 110164 12 0 Thermococcus guaymasensis species 1 277988 15 0 Thermococcus thioreducens species 1 163003 0 21 Thermococcus cleftensis species 1 1 species Thermococcus siculi 151 0 72803 0 21 71998 1 species Thermococcus pacificus 34 0 54262 species 1 Thermococcus chitonophagus 12 0 311400 1 species Thermococcus kodakarensis 28 0 2264 1 species Thermococcus celer 0 5 53952 species 1 Thermococcus peptonophilus Thermococcus sibiricus 1 species 172049 0 64 1 species Thermococcus paralvinellae 64 0 582419 0 12 187880 1 species Thermococcus radiotolerans Thermococcus eurythermalis species 1 1505907 0 9 342948 0 7 Thermococcus onnurineus 1 species no rank 6 0 107 2627626 species 1 Thermococcus sp. 4557 0 11 1042877 2016361 16 0 Thermococcus sp. EXT12c 1 species 1674923 0 35 Thermococcus sp. 2319x1 species 1 2008440 0 13 Thermococcus sp. 5-4 species 1 0 14 122420 species 1 Thermococcus sp. P6 246969 18 0 Thermococcus sp. AM4 1 species 1712654 0 18 Thermococcus piezophilus 1 species 54077 0 13 Thermococcus barossii species 1 1 species Thermococcus profundus 0 17 49899 55802 0 61 Thermococcus barophilus species 1 195522 16 0 Thermococcus nautili species 1 14 0 187878 species 1 Thermococcus gammatolerans clade 46 1783275 2830 0 651137 1409 0 phylum 11 651142 0 317 no rank 3 1593364 0 191 1 genus Candidatus Nitrosopelagicus brevis 1 species 1410606 0 191 2 genus 126 0 1825023 species 1 Candidatus Nitrosotenuis cloacae 65 0 1603555 61 0 1846278 species 1 Candidatus Nitrosotenuis sp. AQ6f 5 order 0 673 31932 338190 673 0 5 family Nitrosopumilus 3 genus 1 1 338191 384 0 Candidatus Nitrosopumilus adriaticus species 1 1580092 0 222 1229909 0 161 Candidatus Nitrosopumilus sediminis 1 species Candidatus Nitrosomarinus 2 genus 1 2 1993653 0 289 287 0 1898749 1 species Candidatus Nitrosomarinus catalina Nitrososphaeria class 3 1643678 419 0 1 2 1968909 258 0 order 1 1968910 258 0 family 1 498374 258 0 1 genus Candidatus Nitrosocaldus islandicus 1 species 2045011 258 0 159 0 1033996 1 order 1033997 159 0 family 1 159 0 497726 1 genus 1034015 0 159 Nitrososphaera viennensis species 1 0 25 51967 phylum 1 25 0 498845 1 genus 1 species Candidatus Korarchaeum cryptofilum 0 25 498846 1396 0 28889 phylum 34 3 1 1396 0 183924 34 class Thermoprotei 0 149 871006 order 2 0 10 871007 family 1 1 genus 105850 10 0 Acidilobus saccharovorans 1 species 242703 0 10 1 family 139 0 255472 1 genus 139 0 200414 1 species Caldisphaera lagunensis 0 139 200415 10 order 203 0 2266 family 6 126 0 2267 34 0 76886 1 genus Caldivirga maquilingensis 1 species 76887 0 34 2 genus 0 19 2270 0 9 184117 1 species Thermoproteus uzoniensis 2271 0 10 Thermoproteus tenax species 1 genus 2 52 0 164450 species 1 Vulcanisaeta distributa 0 32 164451 0 20 985052 1 species Vulcanisaeta moutnovskia 1 genus 2276 0 21 1 species Pyrobaculum islandicum 0 21 2277 77 0 114378 family 4 genus 4 77 0 2268 0 15 1365176 species 1 Thermofilum adornatus Thermofilum uzonense 1 species 1550241 0 23 19 0 2269 species 1 Thermofilum pendens 0 20 1483572 species 1 Thermofilum carboxyditrophus 114380 0 263 order 11 0 63 2307 3 family 54251 22 0 genus 1 22 0 54252 1 species Pyrolobus fumarii 0 15 2308 genus 1 1 species Pyrodictium delaneyi 0 15 1273541 1 genus 54247 26 0 54248 0 26 Hyperthermus butylicus 1 species 2272 0 200 8 family 1 genus 0 10 477695 1200300 10 0 Thermogladius calderae species 1 genus 2 2279 116 0 Staphylothermus hellenicus 1 species 84599 0 37 species 1 Staphylothermus marinus 0 79 2280 54253 0 19 1 genus 0 19 54254 1 species Thermosphaera aggregans 2 genus 17 0 54258 Ignicoccus islandicus 1 species 54259 0 12 160233 5 0 Ignicoccus hospitalis species 1 38 0 2273 2 genus 0 33 94694 species 1 Desulfurococcus amylolyticus 1 species Desulfurococcus mucosus 0 5 2275 2281 0 778 order 10 10 family 0 778 118883 12914 0 92 1 genus species 1 Acidianus hospitalis 0 92 563177 69655 0 147 genus 1 111955 147 0 Sulfolobus tokodaii species 1 0 100 2100760 1 genus 2287 100 0 Sulfolobus solfataricus species 1 41980 78 0 1 1 Metallosphaera genus 3 Metallosphaera sedula species 1 43687 33 0 1006005 44 0 Metallosphaera cuprina 1 species Sulfolobus genus 4 1 4 2284 0 361 121 0 2641160 1 no rank 0 121 1891280 species 1 Sulfolobus sp. A20 species 1 Sulfolobus islandicus 163 0 43080 Sulfolobus acidocaldarius species 1 2285 73 0 2 2922076 0 1 27 Bacteria superkingdom 4232 1550 0 200930 10 phylum class 10 Deferribacteres 9 1 0 1550 68337 Deferribacterales 9 order 191393 0 1541 1 1 1 4 191394 0 1540 Deferribacteraceae 8 family 1 1 545865 0 288 Calditerrivibrio 2 genus Calditerrivibrio nitroreducens species 1 477976 287 0 1 1 53572 0 753 Deferribacter genus 2 Deferribacter desulfuricans species 1 197162 0 752 2 genus Denitrovibrio 228 0 117999 3 1 118000 0 225 Denitrovibrio acetiphilus 1 species 0 267 2351 1 genus 267 0 2352 species 1 Flexistipes sinusarabici 1930617 0 187 3 phylum 187 0 1962850 class 3 3 order Calditrichales 2 1 0 187 1962852 Calditrichaceae family 2 1962854 185 0 1 2 1 genus 0 183 187144 187145 0 183 Caldithrix abyssi 1 species 7 phylum Elusimicrobia 642 0 74152 1 1 119 0 641853 1 class 1 order 119 0 641854 641876 119 0 1 family 1 genus 423604 0 119 Elusimicrobium minutum species 1 423605 119 0 no rank 1 178 0 99260 167965 178 0 uncultured Termite group 1 bacterium 1 species 4 class 344 0 447830 Endomicrobiales 4 order 1 1 1783344 0 344 1783343 343 0 3 family 1 1 1408194 343 0 Endomicrobium 3 genus species 1 Candidatus Endomicrobium trichonymphae 162 0 1408204 1408281 180 0 Endomicrobium proavitum species 1 5200 0 200918 39 phylum class 39 Thermotogae 0 5200 188708 17 1 0 1811 1643947 6 1 7 order Petrotogales 1643949 1805 0 6 family 3 genus Marinitoga 13 1 0 1161 160798 0 552 2640159 1 no rank 0 552 1545835 1 species Marinitoga sp. 1137 149715 596 0 Marinitoga piezophila 1 species 241 0 28236 1 genus Petrotoga mobilis species 1 69499 241 0 Defluviitoga 2 genus 1511648 403 0 1 4 1006576 0 399 Defluviitoga tunisiensis species 1 1 4 2419 3003 0 Thermotogales 27 order 985 0 188709 family 16 11 1 0 481 2335 11 genus Thermotoga 1 species Thermotoga profunda 0 137 1508420 93929 0 34 Thermotoga petrophila species 1 Thermotoga maritima species 1 2336 0 42 no rank 4 2631113 158 0 species 1 Thermotoga sp. Cell2 0 25 1157947 126740 0 38 Thermotoga sp. RQ2 species 1 0 41 1157948 1 species Thermotoga sp. 2812B 126738 54 0 Thermotoga sp. RQ7 species 1 2337 0 49 Thermotoga neapolitana 1 species Thermotoga naphthophila 1 species 93930 27 0 0 23 1508419 1 species Thermotoga caldifontis 1 12 1643951 0 504 Pseudothermotoga 5 genus Pseudothermotoga hypogea 1 species 57487 0 27 species 1 Pseudothermotoga elfii 0 172 38322 169 0 177758 1 species Pseudothermotoga lettingae Pseudothermotoga thermarum 1 species 119394 0 124 4 1 0 2014 1643950 family 10 Fervidobacteriaceae 0 513 2422 7 1 4 genus Fervidobacterium 1 species Fervidobacterium nodosum 0 193 2424 Fervidobacterium pennivorans species 1 93466 0 201 2423 112 0 Fervidobacterium islandicum species 1 Thermosipho genus 5 1 17 2420 0 1497 0 653 2676525 2 no rank Thermosipho sp. 1070 1 species 1437364 333 0 Thermosipho sp. 1063 1 species 1462747 0 320 Thermosipho africanus 1 species 2421 424 0 46541 0 403 Thermosipho melanesiensis species 1 Kosmotogales 4 order 1643946 0 369 1 2 family 3 0 367 1643948 110 0 1184396 1 genus 1 species Mesotoga prima 0 110 1184387 651456 0 257 genus 2 0 118 651457 1 species Kosmotoga olearia 0 139 1330330 species 1 Kosmotoga pacifica phylum 2 110 0 2138240 2 class Coprothermobacteria 1 1 0 110 2138243 order 1 109 0 2138246 109 0 2138247 family 1 1 genus 68335 109 0 Coprothermobacter proteolyticus species 1 35786 109 0 1586 clade 1783272 0 2263926 Tenericutes 102 phylum 544448 18918 0 1 5 no rank 2 0 322 2799557 0 322 1912503 2 1 genus 2 Candidatus Izimaplasma no rank 1 0 320 2624196 0 320 1541959 species 1 Candidatus Izimaplasma sp. HR1 47 1 17896 0 31969 class 97 Mollicutes order 39 Entomoplasmatales 7781 0 186328 13 1 family 14 Entomoplasmataceae 9 1 0 2425 33925 678 0 46238 16 1 genus 5 Entomoplasma 1 species Entomoplasma freundtii 65 0 74700 Entomoplasma luminosum species 1 214888 165 0 215578 216 0 Entomoplasma somnilux species 1 0 216 81459 1 species Entomoplasma melaleucae 8 genus Mesoplasma 1738 0 46239 29 1 Mesoplasma chauliocola 1 species 216427 0 248 Mesoplasma lactucae 1 species 138853 154 0 2151 455 0 Mesoplasma florum species 1 0 239 324078 1 species Mesoplasma coleopterae 2149 216 0 Mesoplasma entomophilum species 1 0 213 219745 species 1 Mesoplasma tabanidae Mesoplasma syrphidae 1 species 225999 0 184 2131 0 5343 1 6 Spiroplasmataceae family 24 1 67 2132 5337 0 Spiroplasma genus 23 1114980 129 0 Spiroplasma atrichopogonis 1 species 182 0 216944 species 1 Spiroplasma sabaudiense no rank 2 328 0 2637901 164 0 1914410 1 species Spiroplasma sp. NBRC 100390 1898044 0 164 Spiroplasma sp. TU-14 1 species 197 0 216933 1 species Spiroplasma chrysopicola 255 0 216938 species 1 Spiroplasma helicoides 1 species Spiroplasma culicicola 345 0 216935 1 species Spiroplasma litorale 0 349 216942 Spiroplasma clarkii 1 species 2139 0 266 2133 0 219 Spiroplasma citri 1 species 315358 159 0 Spiroplasma eriocheiris 1 species species 1 Spiroplasma cantharicola 0 334 362837 216937 0 326 Spiroplasma floricola species 1 248 0 216934 1 species Spiroplasma corruscae 1 species Spiroplasma diminutum 310 0 216936 Spiroplasma taiwanense species 1 2145 352 0 0 186 216945 1 species Spiroplasma syrphidicola 1 species Spiroplasma kunkelii 233 0 47834 228 0 2136 species 1 Spiroplasma monobiae 0 317 216946 1 species Spiroplasma turonicum Spiroplasma mirum 1 species 2144 127 0 Spiroplasma apis 1 species 2137 180 0 186329 1904 0 1 1 Acholeplasmatales 13 order 3 1 0 1903 2146 12 family Acholeplasmataceae genus 6 Candidatus Phytoplasma 809 0 33926 9 1 85632 0 161 species group 1 161 0 59748 species 1 Candidatus Phytoplasma australiense species group 3 85620 0 512 species 1 Maize bushy stunt phytoplasma 0 161 202462 1 species Aster yellows witches'-broom phytoplasma 170 0 229545 100379 0 181 Onion yellows phytoplasma 1 species 85630 127 0 species group 1 37692 0 127 Candidatus Phytoplasma mali 1 species 1 12 2147 0 1091 Acholeplasma genus 5 2148 0 282 Acholeplasma laidlawii 1 species 274 0 35623 1 species Acholeplasma oculi 61635 196 0 Acholeplasma brassicae species 1 Acholeplasma palmae species 1 38986 0 327 0 8164 2085 17 1 order 44 Mycoplasmatales 1 17 2092 0 8147 Mycoplasmataceae 43 family 347 0 2129 3 1 3 genus Ureaplasma 177 0 134821 species 1 Ureaplasma parvum 1 species Ureaplasma urealyticum 167 0 2130 12 genus 2767358 0 2448 1 species Mycoplasma pullorum 149 0 48003 2094 208 0 Mycoplasma arginini 1 species 1 species Mycoplasma bovigenitalium 142 0 2112 29555 265 0 Mycoplasma canis 1 species 2107 0 228 Mycoplasma pulmonis 1 species 171284 228 0 Mycoplasma cynos 1 species 2109 147 0 Mycoplasma synoviae species 1 Mycoplasma fermentans species 1 2115 0 233 species 1 Mycoplasma agalactiae 185 0 2110 species 1 Mycoplasma californicum 115 0 2113 28903 0 364 Mycoplasma bovis species 1 1 species Mycoplasma bovirhinis 0 184 29553 0 5335 2093 88 1 genus 27 Mycoplasma species group 3 0 1375 656088 0 370 2095 species 1 Mycoplasma capricolum species 1 Mycoplasma leachii 0 342 2105 663 0 2102 species 1 Mycoplasma mycoides 1 species Mycoplasma bovoculi 0 166 45362 57372 103 0 Mycoplasma suis 1 species 2123 268 0 Mycoplasma putrefaciens 1 species species 1 Mycoplasma pneumoniae 0 29 2104 Mycoplasma hyorhinis species 1 2100 0 215 984991 105 0 Mycoplasma parvum species 1 species 1 Mycoplasma hyopneumoniae 0 233 2099 species 1 Mycoplasma wenyonii 69 0 65123 287 0 51365 species 1 Mycoplasma yeatsii 2098 0 327 Mycoplasma hominis species 1 Mycoplasma mobile 1 species 2118 278 0 2096 138 0 Mycoplasma gallisepticum 1 species 29501 172 0 Mycoplasma haemofelis species 1 2111 0 112 Mycoplasma arthritidis 1 species 0 126 86660 species 1 Mycoplasma dispar species 1 Mycoplasma genitalium 0 115 2097 29554 0 193 Mycoplasma canadense species 1 28227 0 266 Mycoplasma penetrans 1 species 2128 0 112 Mycoplasma flocculare 1 species no rank 1 0 180 2683645 1 species Mycoplasma sp. (ex Biomphalaria glabrata) 0 180 1749074 171632 0 67 Mycoplasma ovis species 1 123 0 136241 1 species Mycoplasma haemocanis Mycoplasma crocodyli 1 species 50052 188 0 no rank 2 0 695 713063 406 0 1911684 species 1 Tenericutes bacterium MO-XQ 289 0 1911683 1 species Tenericutes bacterium MZ-XQ 0 2086 1297 phylum 34 class 34 Deinococci 2086 0 188787 11 1 15 order Deinococcales 13 1 1033 0 118964 1 1 183710 0 1020 Deinococcaceae 14 family 13 genus Deinococcus 25 1 0 1019 1298 Deinococcus gobiensis 1 species 502394 0 108 1299 53 0 Deinococcus radiodurans species 1 2623546 107 0 no rank 1 2080419 107 0 Deinococcus sp. NW-56 species 1 1 species Deinococcus puniceus 0 73 1182568 1182571 69 0 Deinococcus swuensis species 1 species 1 Deinococcus actinosclerus 0 80 1768108 1309411 0 76 Deinococcus soli Cha et al. 2016 1 species 122 0 55148 species 1 Deinococcus proteolyticus species 1 Deinococcus peraridilitoris 0 84 432329 0 49 310783 1 species Deinococcus deserti Deinococcus maricopensis 1 species 309887 111 0 1 species Deinococcus geothermalis 0 62 68909 2762275 130 0 3 order Trueperaceae 3 family 1 2 332247 0 130 genus 2 Truepera 128 0 332248 4 1 332249 0 124 Truepera radiovictrix species 1 0 912 68933 6 1 15 order Thermales 1 12 188786 0 906 Thermaceae 14 family genus 1 186191 0 78 78 0 186192 1 species Marinithermus hydrothermalis 541 0 270 5 1 genus 8 Thermus 456163 0 53 Thermus parvatiensis species 1 1 no rank 2619321 0 64 0 64 1111069 1 species Thermus sp. CCB_US3_UF1 172 0 274 species 1 Thermus thermophilus 1 species Thermus brockianus 0 64 56956 Thermus scotoductus 1 species 37636 0 37 61 0 271 1 species Thermus aquaticus species 1 Thermus oshimai 0 85 56957 genus 2 Oceanithermus 3 1 97 0 208447 0 94 187137 1 species Oceanithermus profundus 0 178 65551 2 genus 0 82 52022 1 species Meiothermus silvanus 0 96 277 species 1 Meiothermus ruber 150 clade 1798711 2034695 0 1 10 1117 2034695 0 Cyanobacteria 150 phylum 7 order 52604 1624 0 1890500 229 0 1 1 Hyellaceae 3 family 44474 228 0 1 5 Pleurocapsa genus 2 54308 0 223 Pleurocapsa minor species 1 3 1 1395 0 1890498 4 family Dermocarpellaceae 1392 0 102115 10 1 3 genus Stanieria 1 no rank 708 0 2642663 1807358 0 708 Stanieria sp. NIES-3757 species 1 1 species Stanieria cyanosphaera 0 674 102116 Synechococcales 54 order 1890424 0 2012517 1 53 1 3 1213 1911291 0 Prochloraceae family 5 4 genus Prochlorococcus 82 1 1911288 0 1218 0 1458151 1219 1 species Prochlorococcus marinus 2627481 0 453055 no rank 2 1 species Prochlorococcus sp. MIT 0801 2948 0 1501269 Prochlorococcus sp. MIT 0604 species 1 1501268 0 450107 32 family Synechococcaceae 15 1 99419 0 1890426 13034 192 0 1 genus Dactylococcopsis salina 1 species 292566 0 192 26 genus Synechococcus 354 1 0 97996 1129 32046 101 0 Synechococcus elongatus species 1 Synechococcus lividus species 1 33070 0 53 0 97488 2626047 23 no rank species 1 Synechococcus sp. WH 7803 624 0 32051 species 1 Synechococcus sp. PCC 73109 0 113 374982 72 0 321327 species 1 Synechococcus sp. JA-3-3Ab 29410 0 3198 Synechococcus sp. WH 8103 species 1 1916956 400 0 Synechococcus sp. SynAce01 species 1 1827144 76 0 Synechococcus sp. NIES-970 species 1 Synechococcus sp. CC9902 1 species 316279 356 0 195253 0 85 Synechococcus sp. PCC 6312 1 species Synechococcus sp. PCC 8807 1 species 195248 0 76 166314 0 33001 Synechococcus sp. WH 8109 species 1 Synechococcus sp. JA-2-3B'a(2-13) 1 species 321332 65 0 9582 0 585425 1 species Synechococcus sp. KORDI-52 110662 41887 0 Synechococcus sp. CC9605 1 species species 1 Synechococcus sp. RCC307 395 0 316278 0 87 32049 species 1 Synechococcus sp. PCC 7002 0 100 1350461 1 species Synechococcus sp. UTEX 2973 0 297 1173263 species 1 Synechococcus sp. PCC 7502 Synechococcus sp. KORDI-100 1 species 1280380 0 1862 3217 0 84588 species 1 Synechococcus sp. WH 8102 species 1 Synechococcus sp. CC9311 280 0 64471 species 1 Synechococcus sp. PCC 7003 66 0 374981 0 1574 585423 species 1 Synechococcus sp. KORDI-49 1 species Synechococcus sp. PCC 7117 75 0 195498 Cyanobium genus 3 1 21 167375 1124 0 59930 576 0 Cyanobium gracile species 1 527 0 2627006 no rank 1 0 527 1851505 species 1 Cyanobium sp. NIES-981 genus 1 146785 0 92 1 species Thermosynechococcus elongatus 92 0 146786 Pseudanabaenaceae 2 family 1 4 1890436 0 223 1 genus 219 0 1152 2593292 219 0 1 no rank species 1 Pseudanabaena sp. PCC 7367 219 0 82654 2 family 0 164 2303730 1 2 170610 0 164 Halomicronema genus 2 species 1 Halomicronema hongdechloris 0 162 1209493 6 family Leptolyngbyaceae 667 0 1890438 3 1 5 genus Leptolyngbya 0 664 47251 2 1 no rank 3 511 0 2650499 1 species Leptolyngbya sp. NIES-3755 133 0 1752064 Leptolyngbya sp. O-77 species 1 1080068 0 112 Leptolyngbya sp. PCC 7376 species 1 111781 0 266 0 151 1184 1 species Leptolyngbya boryana 1 family 0 308 1890429 155977 308 0 genus 1 1 species Acaryochloris marina 0 308 155978 family 5 Merismopediaceae 392 0 1890428 2 1 0 390 1142 7 1 4 genus Synechocystis no rank 3 2640012 0 383 0 145 1147 1 species Synechocystis sp. PCC 6714 species 1 Synechocystis sp. IPPAS B-1465 119 0 2116702 1148 119 0 Synechocystis sp. PCC 6803 species 1 1301283 10164 0 47 subclass 21 order Oscillatoriales 4064 0 1150 17 1 Oscillatoriaceae family 6 1 6 1892254 0 934 2 genus Moorea 5 1 469 0 1155738 1155739 464 0 Moorea producens species 1 genus 3 Oscillatoria 6 1 0 459 1158 1 species Oscillatoria nigro-viridis 228 0 482564 Oscillatoria acuminata species 1 118323 225 0 3 family Cyanothecaceae 123 0 1892249 8 1 genus 2 Cyanothece 115 0 43988 15 1 2649277 100 0 1 no rank 395961 100 0 Cyanothece sp. PCC 7425 species 1 family 3 Coleofasciculaceae 91 0 1892251 1 1 Geitlerinema genus 2 63132 0 90 1 1 2648775 0 89 no rank 1 0 89 1173025 species 1 Geitlerinema sp. PCC 7407 2557 0 1892252 2 1 5 family Microcoleaceae 1 4 1205 0 2411 Trichodesmium genus 2 1206 0 2407 Trichodesmium erythraeum 1 species genus 2 Microcoleus 144 0 44471 2 1 no rank 1 142 0 2642155 1173027 0 142 Microcoleus sp. PCC 7113 1 species Gomontiellaceae family 3 1892255 342 0 1 2 genus 2 Crinalium 1 1 340 0 241421 Crinalium epipsammum species 1 241425 339 0 Chroococcales order 26 1 15 1118 6100 0 family 4 Microcystaceae 3 1 0 769 1890449 1 3 1125 766 0 Microcystis 3 genus 1126 550 0 Microcystis aeruginosa species 1 213 0 2643300 no rank 1 Microcystis sp. MC19 1 species 1967666 0 213 Cyanobacteriaceae 3 family 1 2 1890452 0 476 1 1 474 0 102234 genus 2 Cyanobacterium Cyanobacterium aponinum 1 species 379064 473 0 10 family Aphanothecaceae 6 1 2406 0 1890450 2 genus 776 0 28070 2546359 0 400 1 species Cyanothece sp. PCC 7822 strain 1 497965 400 0 376 0 2546356 species 1 strain 1 Cyanothece sp. PCC 7424 376 0 65393 1453359 0 463 1 4 Candidatus Atelocyanobacterium 2 genus 713887 0 459 Candidatus Atelocyanobacterium thalassa 1 species 1 genus 477 0 263510 1 species 0 477 2546360 477 0 43989 strain 1 Cyanothece sp. ATCC 51142 200 0 92682 no rank 2 1 2 76023 200 0 Halothece 2 genus 198 0 2632878 1 no rank 1 species Halothece sp. PCC 7418 198 0 65093 484 0 2546365 2 genus 2546366 0 484 2 species 1 strain Cyanothece sp. PCC 8802 256 0 395962 41431 0 228 Cyanothece sp. PCC 8801 strain 1 family 8 Chroococcaceae 2434 0 1890464 13 1 669357 0 1131 1 7 Geminocystis genus 3 0 1124 2625037 no rank 2 1 species Geminocystis sp. NIES-3708 588 0 1615909 1617448 536 0 Geminocystis sp. NIES-3709 1 species Gloeocapsa 2 genus 102231 246 0 1 3 0 243 2623012 no rank 1 243 0 1173026 1 species Gloeocapsa sp. PCC 7428 2 genus Chondrocystis 2 1 0 1044 268175 1 no rank 0 1042 2648896 1 species Chondrocystis sp. NIES-4102 1042 0 2005460 287 0 1983111 1 no rank 718217 287 0 cyanobacterium endosymbiont of Epithemia turgida 1 species order 33 Nostocales 21 1 9466 0 1161 family 18 Nostocaceae 20 1 5194 0 1162 1 15 1163 1351 0 Anabaena genus 4 2 no rank 0 856 2619674 species 1 Anabaena sp. 90 0 415 46234 1647413 0 441 Anabaena sp. WA102 species 1 480 0 1165 species 1 Anabaena cylindrica 24 1 0 3131 1177 10 genus Nostoc species 1 Nostoc flagelliforme 338 0 1306274 272131 340 0 Nostoc punctiforme species 1 no rank 7 2593658 2429 0 1 species Nostoc sp. NIES-3756 371 0 1751286 Nostoc sp. CENA543 species 1 1869241 0 309 1261031 0 353 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 species Nostoc sp. PCC 7120 species 1 103690 0 303 species 1 Nostoc sp. PCC 7524 400 0 28072 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 296 1618022 Nostoc sp. PCC 7107 1 species 317936 0 397 264688 692 0 1 1 Trichormus genus 3 1164 0 362 Trichormus azollae species 1 Trichormus variabilis 1 species 264691 0 329 8 family 2661849 2625 0 Calothrix genus 8 1186 2625 0 1 22 0 386 32054 1 species Calothrix parietina 6 no rank 2619626 0 2217 1337936 327 0 Calothrix sp. 336/3 1 species 1 species Calothrix sp. NIES-3974 296 0 2005462 species 1 Calothrix sp. NIES-4071 0 535 2005469 99598 277 0 Calothrix sp. PCC 7507 species 1 2005461 0 427 Calothrix sp. NIES-4101 1 species 1954171 355 0 Calothrix sp. NIES-2098 species 1 family 3 Rivulariaceae 594 0 1185 9 1 373984 585 0 1 3 Rivularia genus 2 582 0 2676603 1 no rank Rivularia sp. PCC 7116 species 1 373994 582 0 2 family Hapalosiphonaceae 1 1 0 638 1892263 genus 1 637 0 1190 no rank 1 494603 637 0 Fischerella sp. NIES-3754 1 species 1752063 0 637 1 no rank 1219117 394 0 0 394 1940762 1 species Nostocales cyanobacterium HT-58-2 Chroococcidiopsidales 3 order 1 4 1890505 397 0 2 1 393 0 1890528 2 family Chroococcidiopsidaceae 54298 391 0 genus 1 Chroococcidiopsis thermalis 1 species 54299 0 391 307596 230 0 4 class 1 1 307595 230 0 Gloeobacterales order 4 1890422 0 229 1 1 Gloeobacteraceae 3 family 228 0 33071 2 genus 1 species Gloeobacter kilaueensis 0 97 1416614 Gloeobacter violaceus species 1 33072 131 0 1859062 0 72 2 no rank 262406 72 0 1 1 Thermobaculum genus 2 166501 0 71 Thermobaculum terrenum 1 species 120 0 67819 4 phylum 1 1 1663419 0 120 Fimbriimonadia 4 class 1 1 1663425 0 119 Fimbriimonadales order 3 Fimbriimonadaceae family 2 1663426 0 118 1 2 genus 1 116 0 1005038 1005039 0 116 Fimbriimonas ginsengisoli 1 species phylum 657 Firmicutes 53 1 0 133572 1239 91061 0 75955 1 66 Bacilli 419 class 95 1 52424 0 1385 255 order Bacillales Paenibacillaceae 44 family 1 22 186822 0 6049 36 genus Paenibacillus 41 1 5036 0 44249 Paenibacillus stellifer 1 species 169760 73 0 1 species Paenibacillus ihbetae 95 0 1870820 Paenibacillus peoriae species 1 59893 151 0 1178515 0 79 Paenibacillus swuensis species 1 414771 0 272 Paenibacillus donghaensis species 1 no rank 13 0 1705 185978 1 species Paenibacillus sp. FSL R5-0912 86 0 1536771 1536772 0 88 Paenibacillus sp. FSL R7-0273 species 1 0 115 1536774 1 species Paenibacillus sp. FSL H7-0357 species 1 Paenibacillus sp. FSL R7-0331 75 0 1536773 1536769 0 139 Paenibacillus sp. FSL P4-0081 1 species Paenibacillus sp. IHBB 10380 species 1 1566358 351 0 Paenibacillus sp. FSL R5-0345 species 1 1536770 0 218 324057 0 92 Paenibacillus sp. JDR-2 1 species 63 0 1695218 1 species Paenibacillus sp. 32O-W 1536775 0 146 Paenibacillus sp. FSL H7-0737 species 1 0 87 2069255 1 species Paenibacillus sp. lzh-N1 1870819 162 0 Paenibacillus sp. BIHB4019 species 1 Paenibacillus sp. Y412MC10 species 1 481743 0 83 159743 113 0 Paenibacillus terrae 1 species 172713 102 0 Paenibacillus kribbensis 1 species 58 0 365617 species 1 Paenibacillus sabinae Paenibacillus mucilaginosus species 1 61624 201 0 1616788 0 137 Paenibacillus bovis 1 species species 1 Paenibacillus naphthalenovorans 0 93 162209 157 0 189426 1 species Paenibacillus odorifer Paenibacillus borealis species 1 160799 92 0 0 111 189425 species 1 Paenibacillus graminis 178 0 1763538 1 species Paenibacillus crassostreae 0 90 1126833 species 1 Paenibacillus beijingensis Paenibacillus larvae species 1 1464 192 0 0 130 528191 species 1 Paenibacillus xylanexedens 158 0 44251 species 1 Paenibacillus durus 1 species group 93 0 2044880 93 0 483937 1 species Paenibacillus riograndensis 0 68 1462996 species 1 Paenibacillus yonginensis 0 647 1406 species 1 Paenibacillus polymyxa 3 no rank 0 251 85151 55079 0 251 1 1 Aneurinibacillus 3 genus Aneurinibacillus soli 1 species 1500254 121 0 2642329 0 129 1 no rank 0 129 1450761 1 species Aneurinibacillus sp. XH2 0 85 76632 genus 1 377615 0 85 Thermobacillus composti 1 species 3 genus 55080 0 655 54913 0 123 Brevibacillus formosus 1 species 0 185 1393 1 species Brevibacillus brevis 0 347 1465 1 species Brevibacillus laterosporus 116 family Bacillaceae 27801 0 186817 55 1 399 1 0 17256 1386 genus 58 Bacillus 1413 0 345 Bacillus cellulosilyticus 1 species 914 0 1404 1 species Bacillus megaterium 653685 1823 0 9 species group 119858 81 0 Bacillus sonorensis species 1 1423 724 0 Bacillus subtilis 1 species 3 species subgroup 1938374 534 0 240 0 1390 1 species Bacillus amyloliquefaciens species 1 Bacillus siamensis 0 39 659243 1 species Bacillus velezensis 0 255 492670 154 0 1402 1 species Bacillus licheniformis 0 111 1648923 species 1 Bacillus paralicheniformis 19 0 72361 species 1 Bacillus vallismortis 200 0 1452 1 species Bacillus atrophaeus 79881 0 34 Bacillus gibsonii 1 species 356 0 135735 species 1 Bacillus endophyticus species 1 Bacillus beveridgei 69 0 632773 0 204 1398 species 1 Bacillus coagulans 1471 0 296 Bacillus methanolicus 1 species species 1 Bacillus weihaiensis 0 347 1547283 1 species Bacillus safensis 0 347 561879 0 409 33932 1 species Bacillus cohnii 412384 0 322 Bacillus aryabhattai species 1 Bacillus pumilus 1 species 1408 649 0 species group 1 1792192 0 147 293387 0 147 Bacillus altitudinis species 1 0 169 1479 species 1 Bacillus smithii Bacillus infantis 1 species 324767 0 88 1554 0 185979 19 no rank 1127744 0 50 Bacillus sp. JS 1 species Bacillus sp. 1s-1 species 1 2026248 0 67 2009331 0 47 Bacillus sp. MD-5 species 1 Bacillus sp. YP1 1 species 1574141 31 0 species 1 Bacillus sp. IHB B 7164 0 264 1827146 1 species Bacillus sp. 275 32 0 1941347 0 38 563169 species 1 Bacillus sp. SJ-10 95 0 1837130 1 species Bacillus sp. FJAT-14266 Bacillus sp. (in: Bacteria) 1 species 1409 41 0 0 67 1856406 1 species Bacillus sp. H15-1 Bacillus sp. 1NLA3E species 1 666686 255 0 1774743 47 0 Bacillus sp. SDLI1 1 species 29 0 1446792 species 1 Bacillus sp. Pc3 1570330 0 12 Bacillus sp. BH072 1 species 1565991 228 0 Bacillus sp. X1(2014) 1 species 0 17 2049935 species 1 Bacillus sp. Lzh-5 species 1 Bacillus sp. WP8 0 138 756828 1628753 34 0 Bacillus sp. LM 4-2 1 species 98228 0 62 Bacillus sp. OxB-1 species 1 1664069 114 0 Bacillus glycinifermentans 1 species 1 species Bacillus flexus 0 267 86664 10 species group 8076 0 86661 Bacillus toyonensis 1 species 155322 235 0 0 2634 1428 1 species Bacillus thuringiensis species 1 Bacillus bombysepticus 261 0 658666 1405 952 0 Bacillus mycoides 1 species Bacillus cytotoxicus species 1 580165 0 278 1 species Bacillus cereus 2780 0 1396 3 no rank 662 0 2750818 2053832 0 210 Bacillus sp. HBCD-sjtu species 1 0 177 1892404 species 1 Bacillus sp. ABP14 0 275 1839798 species 1 Bacillus sp. FDAARGOS_235 1392 274 0 Bacillus anthracis species 1 species 1 Bacillus xiamenensis 125 0 1178537 1 species Bacillus horikoshii 0 202 79883 genus 2 Salimicrobium 70 0 351195 1 1 1 species Salimicrobium jeotgali 69 0 1230341 55 1 1138 0 129337 genus 15 Geobacillus 56 0 129338 species 1 Geobacillus subterraneus 339 0 1505648 species group 4 Geobacillus thermocatenulatus 1 species 33938 0 83 62 0 169283 species 1 Geobacillus lituanicus Geobacillus thermoleovorans 1 species 33941 0 144 Geobacillus kaustophilus species 1 1462 50 0 1422 0 73 Geobacillus stearothermophilus 1 species 33940 0 110 Geobacillus thermodenitrificans 1 species 0 54 1921421 1 species Geobacillus genomosp. 3 6 no rank 2642459 451 0 species 1 Geobacillus sp. Y4.1MC1 0 110 581103 Geobacillus sp. Y412MC61 species 1 544556 0 42 Geobacillus sp. WCH70 1 species 471223 151 0 550542 0 40 Geobacillus sp. Y412MC52 species 1 691437 83 0 Geobacillus sp. C56-T3 species 1 1233873 0 25 Geobacillus sp. GHH01 1 species Halobacillus 3 genus 1 1 45667 0 323 1 species Halobacillus halophilus 0 140 1570 402384 182 0 Halobacillus mangrovi 1 species 84406 0 1840 1 5 Virgibacillus 7 genus 281 0 2017483 1 species Virgibacillus phasianinus 0 287 1482 species 1 Virgibacillus halodenitrificans species 1 Virgibacillus necropolis 0 274 163877 0 635 2620237 2 no rank Virgibacillus sp. 6R species 1 1911587 331 0 1 species Virgibacillus sp. SK37 304 0 403957 species 1 Virgibacillus pantothenticus 358 0 1473 genus 1 29331 254 0 254 0 1449 1 species Amphibacillus xylanus 0 139 175304 1 1 2 genus Lentibacillus Lentibacillus amyloliquefaciens 1 species 1472767 138 0 459532 136 0 genus 1 586416 136 0 Terribacillus aidingensis species 1 1 genus 1906945 0 191 species 1 Parageobacillus thermoglucosidasius 191 0 1426 2675234 0 1217 genus 5 1 species Bacillus pseudofirmus 253 0 79885 0 107 86665 1 species Bacillus halodurans species 1 Bacillus lehensis 309 0 300825 256 0 79880 species 1 Bacillus clausii Bacillus krulwichiae species 1 199441 0 292 1741 0 400634 12 1 genus 5 Lysinibacillus 291 0 28031 species 1 Lysinibacillus fusiformis 285 0 2636778 no rank 1 0 285 2072025 species 1 Lysinibacillus sp. YS11 1421 0 846 Lysinibacillus sphaericus species 1 307 0 1145276 1 species Lysinibacillus varians 0 613 2675230 2 genus 0 207 665099 1 species Bacillus oceanisediminis 0 406 859143 species 1 Bacillus kochii 0 232 1055323 1 genus Aeribacillus pallidus species 1 33936 0 232 Oceanobacillus 2 genus 1 2 182709 584 0 182710 0 582 Oceanobacillus iheyensis 1 species 2 genus 2675229 616 0 479 0 1478 1 species Bacillus simplex Bacillus muralis species 1 264697 137 0 genus 6 Anoxybacillus 1089 0 150247 15 1 294699 0 181 Anoxybacillus amylolyticus 1 species 33934 0 314 Anoxybacillus flavithermus species 1 2639704 0 397 2 no rank Anoxybacillus sp. B7M1 species 1 1490057 186 0 211 0 1490052 1 species Anoxybacillus sp. B2M1 198467 182 0 Anoxybacillus gonensis species 1 2 genus 0 307 1329200 Fictibacillus phosphorivorans 1 species 1221500 0 140 species 1 Fictibacillus arsenicus 167 0 255247 1 family 186821 0 99 no rank 1 99 0 663587 99 0 85683 species 1 [Bacillus] selenitireducens 186824 0 50 family 2 1 genus Laceyella 2 0 292635 1677050 0 48 1 genus Novibacillus thermophilus species 1 1471761 0 48 family 41 Staphylococcaceae 11 1 11617 0 90964 Auricoccucs 2 genus 2005363 203 0 1 1 species 1 Auricoccus indicus 0 202 1849491 45669 71 0 genus 1 species 1 Salinicoccus halodurans 0 71 407035 10696 0 1279 102 1 genus 33 Staphylococcus Staphylococcus succinus 1 species 61015 273 0 1281 217 0 Staphylococcus carnosus species 1 0 197 985762 species 1 Staphylococcus agnetis species 1 Staphylococcus simulans 0 196 1286 214473 319 0 Staphylococcus nepalensis species 1 0 303 29385 species 1 Staphylococcus saprophyticus 1 species Staphylococcus simiae 0 362 308354 365 0 29388 1 species Staphylococcus capitis 375 0 643214 1 species Staphylococcus stepanovicii 505 0 246432 1 species Staphylococcus equorum 1282 0 595 Staphylococcus epidermidis species 1 Staphylococcus kloosii species 1 29384 278 0 Staphylococcus pasteuri 1 species 45972 700 0 species 1 Staphylococcus pseudintermedius 0 212 283734 46127 225 0 Staphylococcus felis species 1 1280 1044 0 Staphylococcus aureus 1 species 0 107 170573 species 1 Staphylococcus pettenkoferi 1294 150 0 Staphylococcus muscae species 1 species 1 Staphylococcus argenteus 351 0 985002 Staphylococcus piscifermentans 1 species 70258 126 0 species 1 Staphylococcus condimenti 267 0 70255 Staphylococcus hyicus 1 species 1284 159 0 species 1 Staphylococcus cohnii 0 309 29382 Staphylococcus schleiferi 1 species 1295 0 241 1 species Staphylococcus sciuri 0 447 1296 Staphylococcus warneri 1 species 1292 352 0 1288 477 0 Staphylococcus xylosus 1 species 1290 0 349 Staphylococcus hominis 1 species Staphylococcus haemolyticus species 1 1283 345 0 no rank 1 91994 315 0 1715860 315 0 Staphylococcus sp. AntiMn-1 species 1 155085 170 0 Staphylococcus lutrae species 1 Staphylococcus lugdunensis species 1 28035 263 0 Macrococcus 4 genus 69965 0 636 1 8 Macrococcus caseolyticus species 1 69966 192 0 species 1 Macrococcus canis 0 172 1855823 2619255 0 264 1 no rank 1898474 0 264 Macrococcus sp. IME1552 1 species 26 family Planococcaceae 9 1 3765 0 186818 Jeotgalibacillus genus 2 1 5 157226 0 172 species 1 Jeotgalibacillus malaysiensis 0 167 1508404 0 208 648802 genus 1 241244 208 0 Rummeliibacillus stabekisii 1 species 12 genus Planococcus 0 1749 1372 15 1 species 1 Planococcus faecalis 0 226 1598147 144 0 161360 species 1 Planococcus antarcticus Planococcus halocryophilus 1 species 1215089 0 211 1302659 214 0 Planococcus sp. L10.15 1 species 194 0 1374 species 1 Planococcus kocurii 0 67 200991 species 1 Planococcus rifietoensis Planococcus donghaensis species 1 414778 209 0 192421 0 148 Planococcus maritimus species 1 0 277 2662419 no rank 2 Planococcus sp. PAMC 21323 1 species 1526927 0 180 1 species Planococcus sp. MB-3u-03 0 97 2058136 0 44 1038856 1 species Planococcus plakortidis 5 genus Sporosarcina 0 873 1569 5 1 237 0 1476 species 1 Sporosarcina psychrophila 419 0 1571 species 1 Sporosarcina ureae 2647733 0 212 2 no rank 1930546 0 105 Sporosarcina sp. P37 species 1 1 species Sporosarcina sp. P33 0 107 1930764 648800 0 540 1 10 Solibacillus genus 3 1 species Solibacillus silvestris 0 233 76853 2637870 0 297 no rank 1 species 1 Solibacillus sp. R5-41 0 297 2048654 2 genus Kurthia 214 0 1649 1 1 2644826 0 213 no rank 1 213 0 1750719 1 species Kurthia sp. 11kri321 1 4 186820 0 1839 Listeriaceae 9 family 6 genus Listeria 22 1 0 1582 1637 1640 185 0 Listeria seeligeri 1 species Listeria welshimeri 1 species 1643 234 0 1639 591 0 Listeria monocytogenes species 1 216 0 1642 species 1 Listeria innocua Listeria ivanovii species 1 1638 0 334 Brochothrix genus 2 1 1 2755 0 253 2756 0 252 Brochothrix thermosphacta 1 species no rank 8 0 635 539002 1 no rank 539738 0 279 1 genus 1378 0 279 no rank 1 2624949 279 0 0 279 1785995 1 species Gemella sp. oral taxon 928 539742 0 356 7 no rank genus 7 Exiguobacterium 356 0 33986 5 1 2644629 0 222 4 no rank 1849031 55 0 Exiguobacterium sp. U13-1 1 species 50 0 360911 1 species Exiguobacterium sp. AT1b species 1 Exiguobacterium sp. ZWU0009 0 65 1224749 1 species Exiguobacterium sp. MH3 52 0 1399115 1 species Exiguobacterium antarcticum 72 0 132920 1 species Exiguobacterium sibiricum 57 0 332410 family 7 Alicyclobacillaceae 3 1 0 474 186823 3 genus Tumebacillus 1 1 0 151 432330 Tumebacillus avium species 1 1903704 92 0 species 1 Tumebacillus algifaecis 58 0 1214604 29330 107 0 genus 1 405212 0 107 Alicyclobacillus acidocaldarius 1 species 213 0 1129704 genus 2 119 0 2055160 species 1 Kyrpidia sp. EA-1 species 1 Kyrpidia tusciae 0 94 33943 0 23465 186826 63 1 163 order Lactobacillales family 7 606 0 186827 Aerococcus genus 7 1375 606 0 1 11 51665 0 163 Aerococcus urinaeequi 1 species 1 species Aerococcus christensenii 0 94 87541 0 65 119206 species 1 Aerococcus sanguinicola Aerococcus urinae species 1 1376 101 0 103 0 1377 species 1 Aerococcus viridans Aerococcus urinaehominis 1 species 128944 0 69 1 2 81852 3115 0 Enterococcaceae family 19 1 1 33969 326 0 Melissococcus 2 genus 1 species Melissococcus plutonius 0 325 33970 1 1 2737 450 0 Vagococcus 3 genus 633807 0 199 Vagococcus penaei 1 species 0 250 519472 1 species Vagococcus teuberi Enterococcus 12 genus 1 23 1350 0 2060 0 345 1352 1 species Enterococcus faecium 3 no rank 0 329 2608891 2057791 0 109 Enterococcus sp. CR-Ec1 1 species Enterococcus sp. FDAARGOS_163 1 species 2060306 109 0 Enterococcus sp. FDAARGOS_375 species 1 2060307 111 0 Enterococcus faecalis species 1 1351 337 0 Enterococcus mundtii species 1 53346 164 0 species 1 Enterococcus casseliflavus 102 0 37734 1 species Enterococcus thailandicus 165 0 417368 1354 208 0 Enterococcus hirae species 1 Enterococcus wangshanyuanii species 1 2005703 192 0 Enterococcus durans 1 species 53345 0 195 genus 1 277 0 51668 0 277 51669 species 1 Tetragenococcus halophilus 2 1 1851 0 81850 17 family Leuconostocaceae 1 genus 0 147 46254 0 147 1247 species 1 Oenococcus oeni 8 1 1145 0 1243 9 genus Leuconostoc 1245 306 0 Leuconostoc mesenteroides 1 species Leuconostoc lactis species 1 1246 0 46 0 109 2685106 1 no rank 1 species Leuconostoc sp. C2 109 0 979982 114 0 136609 species 1 Leuconostoc kimchii 1 species Leuconostoc garlicum 39 0 255248 0 104 33964 1 species Leuconostoc citreum Leuconostoc carnosum 1 species 1252 173 0 1244 0 246 Leuconostoc gelidum species 1 557 0 46255 4 1 genus 6 Weissella 1 species Weissella cibaria 0 68 137591 126 0 759620 species 1 Weissella ceti 139 0 165096 1 species Weissella koreensis 1 species Weissella jogaejeotgali 0 114 1631871 0 106 1249 species 1 Weissella paramesenteroides Carnobacteriaceae family 11 186828 0 1719 1 2 Carnobacterium 5 genus 2747 1053 0 1 2 1 species Carnobacterium maltaromaticum 0 458 2751 147709 228 0 Carnobacterium inhibens species 1 0 365 257487 no rank 2 141 0 1564681 1 species Carnobacterium sp. CP1 224 0 208596 species 1 Carnobacterium sp. 17-4 genus 2 Marinilactibacillus 0 308 191769 2 1 306 0 2632303 no rank 1 Marinilactibacillus sp. 15R 1 species 1911586 306 0 1 1 356 0 1470540 genus 3 Jeotgalibaca 0 154 708126 species 1 Jeotgalibaca dankookensis 1 no rank 0 201 2621505 1903686 0 201 Jeotgalibaca sp. PTS2502 species 1 1 15 33958 0 8564 Lactobacillaceae 58 family genus 2 344 0 2767881 Lactobacillus sanfranciscensis 1 species 1625 142 0 Lactobacillus lindneri species 1 53444 202 0 3 genus 2742598 518 0 0 65 1613 1 species Lactobacillus fermentum 54 0 97478 species 1 Lactobacillus mucosae Lactobacillus reuteri 1 species 1598 399 0 2767892 75 0 1 genus species 1 Lactobacillus paracollinoides 0 75 240427 6 genus Pediococcus 10 1 0 707 1253 Pediococcus inopinatus 1 species 114090 0 126 1 species group 0 76 1670797 species 1 Pediococcus acidilactici 76 0 1254 species 1 Pediococcus damnosus 127 0 51663 1 species Pediococcus claussenii 0 157 187452 0 211 1255 1 species Pediococcus pentosaceus 2759736 0 410 genus 3 47715 125 0 Lactobacillus rhamnosus 1 species 1 species Lactobacillus paracasei 111 0 1597 1 species Lactobacillus casei 174 0 1582 0 279 2767885 2 genus Lactobacillus curvatus 1 species 28038 106 0 0 173 1599 species 1 Lactobacillus sakei 4 genus 2767887 802 0 Lactobacillus ruminis species 1 1623 54 0 Lactobacillus acidipiscis species 1 89059 0 108 1 species Lactobacillus agilis 75 0 1601 Lactobacillus salivarius species 1 1624 0 565 2767886 144 0 genus 3 Lactobacillus brevis species 1 1580 94 0 17 0 267363 species 1 Lactobacillus zymae 1 species Lactobacillus koreensis 33 0 637971 490 0 2767842 3 genus Lactobacillus paraplantarum 1 species 60520 66 0 Lactobacillus pentosus species 1 1589 0 66 Lactobacillus plantarum species 1 1590 0 358 2767879 1198 0 6 genus 183 0 1612 species 1 Lactobacillus farciminis Lactobacillus alimentarius 1 species 1602 186 0 0 236 392416 species 1 Lactobacillus crustorum 1 species Lactobacillus heilongjiangensis 138 0 1074467 204 0 1847728 species 1 Lactobacillus allii 1007676 0 251 Lactobacillus ginsenosidimutans species 1 genus 1 0 131 2767890 1193095 131 0 Lactobacillus hokkaidonensis species 1 2767889 245 0 2 genus Lactobacillus coryniformis species 1 1610 99 0 1 species Lactobacillus backii 0 146 375175 2786 0 1578 83 1 16 genus Lactobacillus Lactobacillus amylolyticus species 1 83683 116 0 Lactobacillus gasseri species 1 1596 0 357 290 0 1587 species 1 Lactobacillus helveticus species 1 Lactobacillus gallinarum 122 0 52242 Lactobacillus amylovorus species 1 1604 0 180 4 no rank 504 0 2620435 species 1 Lactobacillus sp. CBA3605 142 0 2099788 2099789 0 105 Lactobacillus sp. CBA3606 1 species species 1 Lactobacillus sp. wkB8 193 0 1545702 species 1 Lactobacillus sp. D1501 0 64 2108362 267818 0 115 Lactobacillus kefiranofaciens 1 species species 1 Lactobacillus johnsonii 376 0 33959 0 189 1579 1 species Lactobacillus acidophilus 1 species Lactobacillus jensenii 155 0 109790 Lactobacillus acetotolerans species 1 1600 134 0 1584 0 165 Lactobacillus delbrueckii species 1 2767876 0 64 1 genus 64 0 1603 1 species Lactobacillus amylophilus 0 227 2767893 genus 3 1 species Lactobacillus parabuchneri 0 69 152331 1 species Lactobacillus curieae 99 0 1138822 1581 59 0 Lactobacillus buchneri species 1 2767877 0 129 genus 1 0 129 148814 species 1 Lactobacillus kunkeei Streptococcaceae family 49 1300 0 7313 1 8 Streptococcus 43 genus 1301 5894 0 1 90 Streptococcus parasanguinis 1 species 1318 88 0 543 0 671232 species group 3 105 0 76860 species 1 Streptococcus constellatus Streptococcus anginosus species 1 1328 229 0 1 species Streptococcus intermedius 0 209 1338 Streptococcus gordonii 1 species 1302 246 0 45634 77 0 Streptococcus cristatus species 1 Streptococcus lutetiensis 1 species 150055 98 0 119603 307 0 species group 2 Streptococcus dysgalactiae 1 species 1334 96 0 1336 211 0 Streptococcus equi species 1 0 55 1305 1 species Streptococcus sanguinis species 1 Streptococcus pantholopis 0 85 1811193 species 1 Streptococcus merionis 0 68 400065 1 species Streptococcus mitis 186 0 28037 1348 0 173 Streptococcus parauberis species 1 species 1 Streptococcus iniae 0 119 1346 340 0 1307 species 1 Streptococcus suis 102684 169 0 Streptococcus infantarius 1 species 1 species Streptococcus pluranimalium 0 75 82348 species 1 Streptococcus halotolerans 0 63 1814128 1 species Streptococcus thermophilus 171 0 1308 species 1 Streptococcus agalactiae 0 325 1311 0 87 1326 species 1 Streptococcus acidominimus Streptococcus pyogenes species 1 1314 327 0 no rank 7 2608887 0 473 1 species Streptococcus sp. oral taxon 431 77 0 712633 56 0 1759399 1 species Streptococcus sp. A12 0 159 1319 species 1 Streptococcus sp. 'group B' species 1 Streptococcus sp. NPS 308 47 0 1902136 Streptococcus sp. I-P16 1 species 1156433 0 31 Streptococcus sp. I-G2 1 species 1156431 0 36 0 67 1839799 1 species Streptococcus sp. FDAARGOS_192 0 109 197614 1 species Streptococcus pasteurianus 1888195 0 58 Streptococcus himalayensis species 1 1 species Streptococcus pneumoniae 217 0 1313 226 0 1304 species 1 Streptococcus salivarius Streptococcus pseudopneumoniae 1 species 257758 63 0 species 1 Streptococcus mutans 224 0 1309 315405 220 0 Streptococcus gallolyticus species 1 159 0 1303 species 1 Streptococcus oralis 0 87 1825069 species 1 Streptococcus marmotae Streptococcus uberis 1 species 1349 174 0 1 species Streptococcus equinus 72 0 1335 59310 120 0 Streptococcus macedonicus species 1 1411 0 1357 3 1 5 genus Lactococcus Lactococcus lactis species 1 1358 922 0 Lactococcus raffinolactis 1 species 1366 105 0 Lactococcus piscium 1 species 1364 0 178 Lactococcus garvieae 1 species 1363 203 0 1 no rank 263855 234 0 Lactobacillales bacterium 1 species 1993866 0 234 no rank 1 56 0 33974 1930845 56 0 1 genus Ndongobacter massiliensis 1 species 1871025 56 0 8 1 2052 0 909932 26 class Negativicutes 909929 0 1360 1 7 Selenomonadales order 12 8 family Selenomonadaceae 705 0 1843491 1 1 0 345 158846 genus 1 species 1 Megamonas hypermegale 345 0 158847 6 genus Selenomonas 9 1 359 0 970 1 species Selenomonas sputigena 84 0 69823 0 169 2637378 no rank 3 species 1 Selenomonas sp. oral taxon 136 0 58 713030 1884263 55 0 Selenomonas sp. oral taxon 920 species 1 56 0 712538 species 1 Selenomonas sp. oral taxon 478 971 97 0 Selenomonas ruminantium 1 species 0 648 1843490 3 family genus 3 Pelosinus 0 648 365348 5 1 333 0 2629460 1 no rank Pelosinus sp. UFO1 species 1 484770 333 0 Pelosinus fermentans species 1 365349 310 0 1843488 0 124 1 2 Acidaminococcales order 4 1 1 0 122 909930 3 family Acidaminococcaceae genus 2 904 0 121 0 66 905 species 1 Acidaminococcus fermentans 187327 55 0 Acidaminococcus intestini 1 species 1 2 1843489 0 560 Veillonellales 9 order 558 0 31977 7 1 family 8 Veillonellaceae 0 61 909928 genus 1 0 61 1702287 1 species Negativicoccus massiliensis 29465 252 0 1 1 Veillonella genus 3 Veillonella rodentium species 1 248315 0 60 29466 191 0 Veillonella parvula 1 species Megasphaera 2 genus 1 1 906 72 0 Megasphaera elsdenii species 1 907 0 71 genus 1 39948 0 166 species 1 Dialister pneumosintes 166 0 39950 class 9 526524 0 633 9 order Erysipelotrichales 5 1 0 633 526525 8 family Erysipelotrichaceae 4 1 628 0 128827 1 1 191303 205 0 Turicibacter 2 genus no rank 1 2638206 204 0 0 204 1712675 species 1 Turicibacter sp. H121 1 genus 1729679 38 0 Faecalibaculum rodentium species 1 1702221 0 38 Erysipelothrix genus 3 1647 0 307 1 4 Erysipelothrix rhusiopathiae species 1 1648 0 166 species 1 Erysipelothrix larvae 0 137 1514105 1 no rank 0 74 544447 1834207 74 0 Erysipelotrichaceae bacterium I46 species 1 1676648 0 125 3 class 1676649 125 0 1 4 Limnochordales 3 order 121 0 1676650 2 family 2 genus Limnochorda 16 1 0 121 1676651 Limnochorda pilosa species 1 1555112 105 0 1 no rank 84086 348 0 endosymbiont 'TC1' of Trimyema compressum species 1 243899 0 348 0 2207 1737404 14 1 15 class Tissierellia no rank 1 1737407 0 193 genus 1 1582879 193 0 1852374 0 193 Ezakiella massiliensis 1 species 2 1 0 2000 1737405 13 order Tissierellales 2 family 2042895 510 0 1 2 1505664 0 510 Gottschalkia 2 genus 1 species Gottschalkia acidurici 508 0 1556 family 10 Peptoniphilaceae 8 1 1488 0 1570339 1 genus 162289 0 205 0 205 2637196 1 no rank Peptoniphilus sp. ING2-D1G species 1 1912856 0 205 Parvimonas genus 2 543311 0 451 1 2 1 species Parvimonas micra 449 0 33033 3 1 423 0 165779 3 genus Anaerococcus 0 212 33034 1 species Anaerococcus prevotii 1870984 0 208 Anaerococcus mediterraneensis 1 species 1161127 0 56 genus 1 species 1 Murdochiella vaginalis 0 56 1852373 1 5 150022 345 0 Finegoldia genus 2 0 340 1260 species 1 Finegoldia magna 1 50 186801 52143 0 Clostridia class 182 271 0 485256 1 1 order 3 Natranaerobiales 2 family 485255 0 270 2 genus Natranaerobius 0 270 375928 1 1 species 1 Natranaerobius thermophilus 269 0 375929 Clostridiales order 133 186802 0 42825 1 112 family 1 216572 61 0 459786 0 61 genus 1 Oscillibacter valericigenes species 1 351091 0 61 24 family Peptococcaceae 12 1 2504 0 186807 0 167 51514 1 genus 51515 167 0 Dehalobacterium formicoaceticum 1 species genus 1 2282740 0 129 102134 0 129 Desulfotomaculum gibsoniae species 1 1562 449 0 1 8 Desulfotomaculum 5 genus 1833852 103 0 Desulfotomaculum ferrireducens 1 species Desulfotomaculum nigrificans species 1 1565 94 0 131 0 59610 1 species Desulfotomaculum reducens 113 0 1564 1 species Desulfotomaculum ruminis 588 0 79206 3 1 genus 4 Desulfosporosinus species 1 Desulfosporosinus orientis 178 0 1563 1 species Desulfosporosinus meridiei 0 215 79209 0 192 885581 1 species Desulfosporosinus acidiphilus 278993 86 0 genus 1 1 species Thermincola potens 86 0 863643 471826 80 0 1 genus 471827 80 0 Candidatus Desulforudis audaxviator 1 species genus 5 Desulfitobacterium 476 0 36853 1 1 Desulfitobacterium dehalogenans species 1 36854 0 110 1 species Desulfitobacterium metallireducens 128 0 142877 Desulfitobacterium hafniense 1 species 49338 121 0 233055 116 0 Desulfitobacterium dichloroeliminans species 1 3 genus 218 0 56112 species 1 Dehalobacter restrictus 0 74 55583 0 144 2635733 no rank 2 1 species Dehalobacter sp. DCA 0 70 1147129 1 species Dehalobacter sp. CF 74 0 1131462 121 0 51196 1 genus 0 121 51197 species 1 Syntrophobotulus glycolicus 178 0 2282742 genus 1 Desulfotomaculum acetoxidans 1 species 58138 178 0 0 3178 186804 9 1 family 10 Peptostreptococcaceae 0 762 1849828 1 1 2 genus Paeniclostridium 761 0 1505 species 1 Paeniclostridium sordellii 1870884 0 1424 1 2 Clostridioides genus 2 1496 0 1422 Clostridioides difficile species 1 186831 429 0 1 genus Acetoanaerobium sticklandii species 1 1511 429 0 no rank 1 0 245 1411023 2081703 0 245 Peptostreptococcaceae bacterium oral taxon 929 species 1 1 genus 44259 186 0 143361 186 0 Filifactor alocis species 1 1481960 123 0 1 2 Peptoclostridium 2 genus 1 species Peptoclostridium acidaminophilum 121 0 1731 541000 0 600 8 family 67 0 253238 genus 1 253239 0 67 Ethanoligenens harbinense 1 species 3 1 0 86 946234 2 genus Flavonifractor species 1 Flavonifractor plautii 83 0 292800 2305133 53 0 no rank 1 1572656 0 53 Ruminococcaceae bacterium CPB6 1 species 216851 0 72 genus 1 Faecalibacterium prausnitzii species 1 853 72 0 no rank 1 0 87 552397 species 1 [Clostridium] cellulosi 0 87 29343 1263 235 0 2 genus 0 136 1160721 species 1 Ruminococcus bicirculans 1 species Ruminococcus albus 99 0 1264 family 4 Eubacteriaceae 1 1 0 489 186806 1 genus 33951 216 0 216 0 33952 1 species Acetobacterium woodii 272 0 1730 4 1 2 genus Eubacterium 1736 0 268 Eubacterium limosum 1 species 990719 57 0 family 1 1 genus 990721 57 0 0 57 1805714 species 1 Christensenella massiliensis 1 6 186803 3471 0 Lachnospiraceae 21 family 2 genus 0 422 830 Butyrivibrio hungatei 1 species 185008 209 0 Butyrivibrio proteoclasticus species 1 43305 213 0 1 genus 2719231 86 0 species 1 [Clostridium] saccharolyticum 0 86 84030 1506553 0 449 1 1 Lachnoclostridium 4 genus 0 297 66219 species 1 Lachnoclostridium phytofermentans 0 51 1871021 species 1 Lachnoclostridium phocaeense 2608895 0 100 no rank 1 1834196 0 100 Lachnoclostridium sp. YL32 1 species 841 92 0 genus 1 1 species Roseburia hominis 0 92 301301 1 1 0 672 698776 2 genus Cellulosilyticum Cellulosilyticum lentocellum species 1 29360 0 671 268 0 28050 genus 1 [Eubacterium] eligens species 1 39485 0 268 1 genus 207244 0 232 Anaerostipes hadrus species 1 649756 0 232 2039240 152 0 1 genus 152 0 28446 species 1 Anaerotignum propionicum genus 1 2719313 0 88 [Clostridium] bolteae 1 species 208479 0 88 no rank 2 186928 233 0 712991 77 0 Lachnospiraceae bacterium oral taxon 500 species 1 0 156 39491 1 species [Eubacterium] rectale genus 1 1663717 0 234 1 species Herbinix luporum 234 0 1679721 2569097 282 0 genus 1 0 282 39488 species 1 [Eubacterium] hallii 572511 255 0 2 genus 0 146 1322 species 1 Blautia hansenii 1 no rank 109 0 2648079 1796616 0 109 Blautia sp. YL58 species 1 1 21 31979 29923 0 Clostridiaceae family 39 Clostridium genus 30 1 190 1485 27631 0 species 1 Clostridium saccharobutylicum 1144 0 169679 0 755 1513 species 1 Clostridium tetani 1494 0 566 Clostridium cochlearium 1 species species 1 Clostridium bornimense 830 0 1216932 Clostridium cellulovorans 1 species 1493 673 0 765 0 1509 species 1 Clostridium sporogenes 1 species Clostridium perfringens 0 1538 1502 Clostridium estertheticum species 1 238834 583 0 species 1 Clostridium ljungdahlii 0 566 1538 84023 0 525 Clostridium autoethanogenum 1 species 1 species Clostridium chauvoei 663 0 46867 29341 781 0 Clostridium argentinense 1 species species 1 Clostridium saccharoperbutylacetonicum 1249 0 36745 0 654 394958 species 1 Clostridium taeniosporum 648 0 1542 1 species Clostridium novyi 1 species Clostridium butyricum 0 1097 1492 species 1 Clostridium carboxidivorans 914 0 217159 no rank 2 2614128 295 0 1042156 0 41 Clostridium sp. SY8519 species 1 Clostridium sp. BNL1100 species 1 755731 254 0 Clostridium scatologenes species 1 1548 888 0 Clostridium baratii species 1 1561 0 1183 species 1 Clostridium formicaceticum 460 0 1497 5436 0 1491 species 1 Clostridium botulinum 0 660 1488 1 species Clostridium acetobutylicum Clostridium kluyveri species 1 1534 811 0 0 1415 1520 species 1 Clostridium beijerinckii 1 species Clostridium aceticum 0 416 84022 Clostridium pasteurianum 1 species 1501 0 1430 496 0 1519 1 species Clostridium tyrobutyricum genus 1 390805 0 312 1 species Geosporobacter ferrireducens 312 0 1424294 49082 1347 0 1 13 Candidatus Arthromitus genus 4 no rank 3 2638829 0 1334 Candidatus Arthromitus sp. SFB-rat-Yit species 1 1041504 398 0 Candidatus Arthromitus sp. SFB-mouse 1 species 49118 0 458 1508644 0 478 Candidatus Arthromitus sp. SFB-mouse-NL 1 species 0 612 114627 1 1 3 genus Alkaliphilus 461876 265 0 Alkaliphilus oremlandii species 1 346 0 208226 1 species Alkaliphilus metalliredigens 545 0 538999 no rank 7 Clostridiales Family XVII. Incertae Sedis family 2 1 3 539000 0 103 100 0 73918 1 genus 0 100 73919 1 species Thermaerobacter marianensis 1392389 0 59 genus 1 0 59 1297617 species 1 Intestinimonas butyriciproducens 0 300 543314 1 1 3 family Clostridiales Family XIII. Incertae Sedis [Eubacterium] sulci species 1 143393 167 0 0 132 86331 1 genus 114527 0 132 Mogibacterium diversum species 1 2717089 83 0 genus 1 2086584 83 0 Mordavella sp. Marseille-P3756 1 species 0 90 31984 1 family genus 1 90 0 2697 90 0 35701 1 species Heliobacterium modesticaldum family 10 0 1521 2304686 1637257 0 61 genus 1 61 0 884684 1 species Mageeibacillus indolicus 1 genus 2304693 0 140 84032 0 140 [Clostridium] thermosuccinogenes 1 species 1 genus 2304691 104 0 1510 104 0 [Clostridium] stercorarium 1 species no rank 1 2305130 0 33 Ruminiclostridium sp. KB18 1 species 1834198 33 0 1 genus 0 227 236752 236753 227 0 Fastidiosipila sanguinis 1 species Ruminiclostridium genus 2 1 6 1508657 259 0 253 0 1521 1 species [Clostridium] cellulolyticum genus 3 2304692 0 697 138 0 1515 1 species Ruminiclostridium thermocellum 270 0 288965 1 species [Clostridium] clariflavum species 1 Herbivorax saccincola 289 0 1677857 68298 0 168 family 3 129001 0 66 1 2 Syntrophothermus 2 genus 1 species Syntrophothermus lipocalidus 64 0 86170 0 102 862 genus 1 863 102 0 Syntrophomonas wolfei species 1 Symbiobacteriaceae 3 family 1 1 543349 106 0 Symbiobacterium 2 genus 1 1 2733 0 105 2734 104 0 Symbiobacterium thermophilum 1 species order 11 Halanaerobiales 0 2298 53433 6 1 Halobacteroidaceae 4 family 53434 0 769 1 3 244 0 28186 genus 1 244 0 28187 species 1 Acetohalobium arabaticum Halobacteroides genus 2 1 2 42417 0 522 520 0 42422 1 species Halobacteroides halobius 972 1523 0 1 4 Halanaerobiaceae 6 family 2330 1271 0 1 7 Halanaerobium genus 3 Halanaerobium hydrogeniformans species 1 656519 0 622 2331 642 0 Halanaerobium praevalens 1 species Halothermothrix genus 2 32636 0 248 1 9 0 239 31909 species 1 Halothermothrix orenii 6436 0 68295 3 1 order 31 Thermoanaerobacterales 186814 0 3113 1 9 Thermoanaerobacteraceae family 15 9 genus Thermoanaerobacter 121 1 0 2563 1754 1 species Thermoanaerobacter brockii 289 0 29323 46354 0 342 Thermoanaerobacter wiegelii species 1 Thermoanaerobacter pseudethanolicus species 1 496866 0 289 Thermoanaerobacter italicus 1 species 108150 0 285 583357 290 0 Thermoanaerobacter mathranii species 1 1 species Thermoanaerobacter kivui 283 0 2325 no rank 2 2636821 664 0 species 1 Thermoanaerobacter sp. X513 373 0 573062 399726 291 0 Thermoanaerobacter sp. X514 1 species 121 0 129957 genus 1 0 121 129958 1 species Carboxydothermus hydrogenoformans no rank 2 42857 0 135 44260 0 93 genus 1 93 0 1525 1 species Moorella thermoacetica 1 genus 42 0 42837 42838 0 42 Ammonifex degensii 1 species genus 1 213 0 249529 Caldanaerobacter subterraneus species 1 911092 213 0 genus 1 140458 72 0 1 species Thermacetogenium phaeum 72 0 85874 369 0 227387 family 1 369 0 227388 genus 1 369 0 184064 species 1 Thermodesulfobium narugense 6 1 2872 0 543371 13 family Thermoanaerobacterales Family III. Incertae Sedis 3 genus Thermoanaerobacterium 2 1 771 0 28895 1517 0 451 Thermoanaerobacterium thermosaccharolyticum 1 species 318 0 29329 1 species Thermoanaerobacterium xylanolyticum 9 genus Caldicellulosiruptor 2095 0 44000 36 1 1 species Caldicellulosiruptor bescii 221 0 31899 1 species Caldicellulosiruptor lactoaceticus 250 0 52766 0 240 52765 1 species Caldicellulosiruptor kristjanssonii 285 0 44001 1 species Caldicellulosiruptor saccharolyticus 262 0 413888 species 1 Caldicellulosiruptor hydrothermalis 0 276 413889 1 species Caldicellulosiruptor kronotskyensis 1 species Caldicellulosiruptor obsidiansis 252 0 717609 273 0 55205 1 species Caldicellulosiruptor owensensis family 1 0 79 543372 genus 1 79 0 252965 1 species Mahella australiensis 79 0 252966 order 3 2770089 0 263 2 family 0 187 2770092 499228 0 187 1 1 Tepidanaerobacter 2 genus 186 0 499229 1 species Tepidanaerobacter acetatoxydans 2770093 76 0 1 family 291988 76 0 1 genus 291990 76 0 Thermosediminibacter oceani species 1 201174 73010 0 1 11 Actinobacteria phylum 609 Actinobacteria 565 class 1760 69380 0 1 256 29 order Propionibacteriales 13 1 2619 0 85009 1 23 31957 0 1264 Propionibacteriaceae 16 family 1 genus 203133 43 0 43 0 2633994 no rank 1 1871034 43 0 Propionimicrobium sp. Marseille-P3275 species 1 Tessaracoccus 5 genus 72763 416 0 1 9 2635419 0 121 no rank 1 species 1 Tessaracoccus sp. T2.5-30 121 0 1909732 1610493 0 95 Tessaracoccus flavus species 1 1 species Tessaracoccus aquimaris 104 0 1332264 399497 0 87 Tessaracoccus flavescens 1 species 113 0 29404 1 genus 29405 0 113 Microlunatus phosphovorus 1 species 1912215 140 0 genus 1 1 species Acidipropionibacterium acidipropionici 0 140 1748 2801844 0 118 genus 1 0 118 1750 1 species Pseudopropionibacterium propionicum genus 2 0 222 1743 1744 0 174 Propionibacterium freudenreichii species 1 1 no rank 2608905 48 0 48 0 671223 species 1 Propionibacterium sp. oral taxon 193 2 1 0 189 1912216 genus 4 Cutibacterium Cutibacterium acnes species 1 1747 70 0 Cutibacterium granulosum species 1 33011 37 0 80 0 33010 species 1 Cutibacterium avidum 16 1 0 1342 85015 12 family Nocardioidaceae 0 81 116071 1 1 2 genus Micropruina 75385 0 80 Micropruina glycogenica species 1 genus 4 Nocardioides 19 1 525 0 1839 2045452 112 0 Nocardioides sp. 78 species 1 450734 0 189 Nocardioides dokdonensis species 1 1 no rank 2615069 0 205 0 205 196162 1 species Nocardioides sp. JS614 genus 1 187 0 2040 Aeromicrobium erythreum species 1 2041 187 0 182639 249 0 1 11 Kribbella genus 2 Kribbella flavida species 1 182640 238 0 0 284 2044 6 1 2 genus Pimelobacter 2045 278 0 Pimelobacter simplex species 1 716 0 414714 2 1 order 4 Catenulisporales 714 0 414877 8 1 3 family Catenulisporaceae 414878 706 0 1 3 Catenulispora genus 2 Catenulispora acidiphila 1 species 304895 0 703 3 order 1643684 159 0 Nakamurellaceae 3 family 1 2 85031 0 159 2 1 157 0 53460 2 genus Nakamurella 53461 0 155 Nakamurella multipartita 1 species 1 35 85011 0 20863 Streptomycetales order 82 81 family Streptomycetaceae 20828 0 2062 95 1 2063 0 1432 1 7 Kitasatospora genus 5 no rank 1 0 282 2633591 2018025 282 0 Kitasatospora sp. MMS16-BH015 1 species species 1 Kitasatospora albolonga 0 557 68173 Kitasatospora setae 1 species 2066 0 364 1894 222 0 Kitasatospora aureofaciens species 1 75 genus Streptomyces 422 1 0 19301 1883 68280 246 0 Streptomyces violaceusniger 1 species 1 species Streptomyces fulvissimus 0 201 68202 285473 0 195 Streptomyces rubrolavendulae 1 species 1 species Streptomyces albus 495 0 1888 1901 0 152 Streptomyces clavuligerus species 1 Streptomyces parvulus 1 species 146923 189 0 1477431 844 0 2 species group 42239 234 0 Streptomyces sampsonii 1 species Streptomyces coelicolor 1 species 1902 610 0 1 species Streptomyces pratensis 0 125 1169025 1616117 0 277 Streptomyces formicae species 1 1 species Streptomyces lydicus 601 0 47763 Streptomyces lividans 1 species 1916 0 225 191 0 42684 1 species Streptomyces collinus 155 0 1907 1 species Streptomyces glaucescens Streptomyces alfalfae 1 species 1642299 253 0 Streptomyces pluripotens 1 species 1355015 0 138 1940 0 220 Streptomyces albireticuli species 1 species 1 Streptomyces albulus 1154 0 68570 species 1 Streptomyces xinghaiensis 0 191 1038928 1 species Streptomyces pactum 0 381 68249 species 1 Streptomyces bingchenggensis 319 0 379067 Streptomyces pristinaespiralis 1 species 38300 0 210 0 380 629295 2 species group 1 species subgroup 195 0 1482558 195 0 1908 1 species Streptomyces globisporus 1482596 0 185 species subgroup 1 Streptomyces griseus species 1 1911 0 185 68192 0 141 Streptomyces cyaneogriseus species 1 0 173 68214 species 1 Streptomyces griseochromogenes 29303 198 0 Streptomyces cattleya 1 species Streptomyces sp. XZHG99 species 1 2049881 0 222 193462 195 0 Streptomyces niveus species 1 496 0 54571 1 species Streptomyces venezuelae Streptomyces reticuli 1 species 1926 246 0 0 5360 2593676 24 no rank 261 0 1262452 1 species Streptomyces sp. 769 158 0 1837283 1 species Streptomyces sp. S8 Streptomyces sp. CFMR 7 species 1 1649184 0 189 269 0 206662 1 species Streptomyces sp. FR-008 444103 0 234 Streptomyces sp. CNQ-509 species 1 species 1 Streptomyces sp. WAC00288 231 0 2094021 0 194 1561022 1 species Streptomyces sp. CCM_MD2014 0 219 1841249 1 species Streptomyces sp. RTd22 354 0 1495638 1 species Streptomyces sp. M56 Streptomyces sp. P3 species 1 2135430 255 0 173 0 862751 1 species Streptomyces sp. SirexAA-E Streptomyces sp. Tue 6075 1 species 1661694 179 0 1 species Streptomyces sp. PAMC 26508 154 0 1265601 species 1 Streptomyces sp. CdTB01 0 257 1725411 0 232 1972846 1 species Streptomyces sp. Sge12 species 1 Streptomyces sp. SAT1 264 0 1849967 1812480 207 0 Streptomyces sp. fd1-xmd 1 species 0 194 1984801 species 1 Streptomyces sp. CLI2509 234612 193 0 Streptomyces sp. TN58 species 1 2059884 240 0 Streptomyces sp. CMB-StM0423 1 species 1 species Streptomyces sp. MOE7 216 0 1961713 Streptomyces sp. 3211 1 species 1964449 308 0 1 species Streptomyces sp. 4F 0 172 1751294 species 1 Streptomyces sp. Mg1 0 207 465541 1969 0 152 Streptomyces chartreusis species 1 Streptomyces leeuwenhoekii species 1 1437453 0 167 362257 0 251 Streptomyces vietnamensis 1 species 1 species Streptomyces lincolnensis 233 0 1915 Streptomyces malaysiensis species 1 92644 260 0 275 0 553510 1 species Streptomyces gilvosporeus 0 489 1912 1 species Streptomyces hygroscopicus Streptomyces puniciscabiei species 1 164348 216 0 species 1 Streptomyces violaceoruber 200 0 1935 0 166 1950 1 species Streptomyces peucetius 1 species Streptomyces scabiei 238 0 1930 1971 210 0 Streptomyces noursei species 1 0 208 1914 1 species Streptomyces lavendulae 236 0 67267 species 1 Streptomyces alboflavus 0 659 75293 species 1 Streptomyces autolyticus species 1 Streptomyces sp. S10(2016) 199 0 1783515 33903 258 0 Streptomyces avermitilis 1 species Streptomyces ambofaciens species 1 1889 0 160 species 1 Streptomyces xiamenensis 0 129 408015 Actinomycetales order 16 2037 0 1041 1 1 2049 1040 0 1 18 Actinomycetaceae family 15 2050 0 60 1 genus 2051 0 60 Mobiluncus curtisii species 1 1069494 74 0 genus 1 1 species Trueperella pyogenes 74 0 1661 0 63 2529408 genus 1 Actinomyces meyeri species 1 52773 63 0 1 genus 28263 0 70 28264 70 0 Arcanobacterium haemolyticum 1 species 0 59 1653174 1 genus 59 0 59505 species 1 Actinotignum schaalii Actinomyces genus 9 1 32 1654 0 696 84 0 1960083 1 species Actinomyces gaoshouyii 164 0 111015 1 species Actinomyces radicidentis Actinomyces oris species 1 544580 0 85 1852377 43 0 Actinomyces pacaensis species 1 no rank 3 2609248 0 232 Actinomyces sp. oral taxon 414 1 species 712122 0 74 1 species Actinomyces sp. oral taxon 897 0 52 2081702 1851395 106 0 Actinomyces sp. Chiba101 1 species 1912795 0 56 Actinomyces sp. VUL4_3 species 1 52018 310 0 no rank 1 1650658 310 0 Actinobacteria bacterium IMCC26256 species 1 1643818 0 146 1 no rank 1 genus 146 0 147067 species 1 Thermobispora bispora 146 0 2006 1 11 2039638 1965 0 Candidatus Nanopelagicales order 12 0 1954 2162846 family 11 1 7 622681 0 945 Candidatus Planktophila genus 7 1 species Candidatus Planktophila vernalis 145 0 1884907 0 164 573600 species 1 Candidatus Planktophila limnetica 192 0 1884905 1 species Candidatus Planktophila versatilis 1 species Candidatus Planktophila dulcis 185 0 1884914 Candidatus Planktophila lacus species 1 1884913 162 0 Candidatus Planktophila sulfonica 1 species 1884904 90 0 Candidatus Nanopelagicus 4 genus 1 3 2039639 0 1009 1884634 308 0 Candidatus Nanopelagicus limnes 1 species 1884915 316 0 Candidatus Nanopelagicus hibericus 1 species Candidatus Nanopelagicus abundans 1 species 1884916 382 0 1110 0 85013 6 1 order 7 Frankiales 2 1 0 1104 74712 6 family Frankiaceae 20 1 0 1102 1854 genus 5 Frankia 298654 0 255 Frankia inefficax species 1 399 0 1859 1 species Frankia alni 1 no rank 2632575 266 0 Frankia sp. EAN1pec 1 species 298653 0 266 162 0 106370 species 1 Frankia casuarinae 622452 0 184 1 1 Kineosporiales order 4 family 3 Kineosporiaceae 3 1 183 0 83778 2 1 180 0 33981 2 genus Kineococcus 0 178 131568 1 species Kineococcus radiotolerans 0 98 622450 3 order 1 1 98 0 622451 3 family Actinopolysporaceae Actinopolyspora genus 2 1 3 1849 97 0 1 species Actinopolyspora erythraea 94 0 414996 3 order 85014 153 0 1 11 85034 153 0 Glycomycetaceae 3 family 2 genus Stackebrandtia 2 1 142 0 283810 283811 0 140 Stackebrandtia nassauensis 1 species order 161 Corynebacteriales 16284 0 85007 86 1 7 1 344 0 85028 family 4 Tsukamurellaceae 3 genus Tsukamurella 0 337 2060 3 1 0 205 57704 1 species Tsukamurella tyrosinosolvens 0 129 2061 species 1 Tsukamurella paurometabola 31 family Nocardiaceae 0 4654 85025 28 1 Nocardia 7 genus 1817 1450 0 1 25 1 species Nocardia nova 0 179 37330 37326 407 0 Nocardia brasiliensis 1 species 37329 205 0 Nocardia farcinica species 1 0 199 455432 species 1 Nocardia terpenica 135487 0 253 Nocardia cyriacigeorgica 1 species 182 0 37332 1 species Nocardia seriolae 1827 3176 0 1 86 Rhodococcus genus 23 0 80 334542 1 species Rhodococcus qingshengii Rhodococcus ruber species 1 1830 0 209 species 1 Rhodococcus fascians 0 90 1828 species 1 Rhodococcus opacus 0 453 37919 192944 1264 0 no rank 12 species 1 Rhodococcus sp. H-CA8f 0 90 1727214 1033922 0 167 Rhodococcus sp. WB1 species 1 0 88 1653479 species 1 Rhodococcus sp. PBTS 2 species 1 Rhodococcus sp. YL-1 0 74 1045808 1 species Rhodococcus sp. 008 0 78 1723645 0 136 935199 species 1 Rhodococcus sp. p52 1805827 0 151 Rhodococcus sp. MTM3W5.2 1 species 1 species Rhodococcus sp. 2G 115 0 1570939 1564114 0 113 Rhodococcus sp. B7740 1 species 679318 0 50 Rhodococcus sp. WMMA185 1 species Rhodococcus sp. BH4 species 1 1807790 75 0 1653478 0 127 Rhodococcus sp. PBTS 1 1 species 1 species Rhodococcus rhodochrous 165 0 1829 Rhodococcus jostii species 1 132919 173 0 1 species Rhodococcus hoagii 141 0 43767 1 species Rhodococcus aetherivorans 0 176 191292 1833 165 0 Rhodococcus erythropolis species 1 174 0 103816 1 species Rhodococcus pyridinivorans 0 61 316606 family 2 0 61 286801 5 1 2 genus Segniliparus 286802 56 0 Segniliparus rotundus species 1 1762 6885 0 1 24 Mycobacteriaceae family 57 13 genus 0 1989 1866885 1 species Mycobacterium smegmatis 185 0 1772 758802 0 127 Mycobacterium litorale species 1 Mycobacterium vanbaalenii species 1 110539 0 127 1804 200 0 Mycobacterium gilvum 1 species Mycobacterium vaccae 1 species 1810 167 0 1 species Mycobacterium phlei 0 216 1771 0 176 1800 1 species Mycobacterium chubuense 146 0 1791 1 species Mycobacterium aurum Mycobacterium rhodesiae species 1 36814 0 131 species 1 Mycobacterium neoaurum 0 107 1795 species 1 Mycobacterium fortuitum 126 0 1766 0 158 134601 species 1 Mycobacterium goodii 1797 123 0 Mycobacterium thermoresistibile 1 species 1 262 1763 3868 0 Mycobacterium genus 34 1781 167 0 Mycobacterium marinum 1 species species group 4 77643 292 0 0 70 78331 species 1 Mycobacterium canettii 1 75 1773 0 222 Mycobacterium tuberculosis species 3 Mycobacterium bovis 1 biotype 1765 75 0 biotype 1 Mycobacterium africanum 0 72 33894 no rank 13 2642494 0 1457 0 169 212767 species 1 Mycobacterium sp. JS623 1 species Mycobacterium sp. MOTT36Y 34 0 1168287 164756 0 117 Mycobacterium sp. MCS 1 species 0 76 1561223 1 species Mycobacterium sp. QIA-37 0 123 1273687 1 species Mycobacterium sp. VKM Ac-1817D 130 0 1682113 species 1 Mycobacterium sp. YC-RL4 1920667 92 0 Mycobacterium sp. WY10 species 1 107 0 2051552 1 species Mycobacterium sp. PYR15 1545728 0 117 Mycobacterium sp. EPa45 1 species 1879023 144 0 Mycobacterium sp. djl-10 species 1 Mycobacterium sp. JLS species 1 164757 0 122 Mycobacterium sp. NRRL B-3805 1 species 1570328 107 0 189918 0 119 Mycobacterium sp. KMS 1 species 22 0 1769 species 1 Mycobacterium leprae species 1 Mycobacterium dioxanotrophicus 0 177 482462 species group 8 0 989 120793 1 species Mycobacterium marseillense 0 81 701042 0 136 339268 species 1 Mycobacterium colombiense Mycobacterium paraintracellulare species 1 1138383 42 0 1767 0 330 1 79 Mycobacterium intracellulare species 4 1 subspecies Mycobacterium indicus pranii 65 0 35617 Mycobacterium yongonense subspecies 1 1203599 63 0 1 subspecies Mycobacterium chimaera 123 0 222805 Mycobacterium avium species 1 1764 400 0 Mycobacterium kansasii 1 species 1768 125 0 species 1 Mycobacterium haemophilum 0 78 29311 Mycobacterium ulcerans species 1 1809 0 107 0 100 2249310 species group 1 1 species Mycobacterium shigaense 0 100 722731 Mycobacterium liflandii 1 species 261524 92 0 0 90 697025 1 1 genus 2 Hoyosella 0 89 639313 species 1 Hoyosella subflava 1073531 222 0 2 genus species 1 Mycobacterium sinense 112 0 875328 Mycobacterium terrae 1 species 1788 0 110 670516 0 692 5 genus 1578165 0 75 Mycobacterium saopaulense species 1 species 1 Mycobacterium immunogenum 78 0 83262 405 0 36809 species 1 Mycobacterium abscessus species 1 Mycobacterium stephanolepidis 0 68 1520670 1774 0 66 Mycobacterium chelonae species 1 Corynebacteriaceae family 52 1 14 1653 3135 0 genus 51 Corynebacterium 42 1 3121 0 1716 Corynebacterium maris species 1 575200 0 90 50 0 203263 1 species Corynebacterium aquilae 1231000 0 32 Corynebacterium lactis 1 species 0 39 161896 1 species Corynebacterium camporealensis Corynebacterium variabile 1 species 1727 0 81 43 0 1721 species 1 Corynebacterium callunae 0 38 401472 species 1 Corynebacterium ureicelerivorans 0 64 43770 species 1 Corynebacterium striatum Corynebacterium jeikeium species 1 38289 0 69 191493 75 0 Corynebacterium sphenisci species 1 Corynebacterium marinum species 1 349751 67 0 species 1 Corynebacterium atypicum 0 52 191610 0 29 42817 species 1 Corynebacterium argentoratense 0 52 43771 species 1 Corynebacterium urealyticum 156978 43 0 Corynebacterium imitans 1 species 1 species Corynebacterium epidermidicanis 0 23 1050174 Corynebacterium uterequi 1 species 1072256 329 0 Corynebacterium glutamicum species 1 1718 0 140 1404244 53 0 Corynebacterium glyciniphilum species 1 0 70 2624378 no rank 2 species 1 Corynebacterium sp. ATCC 6931 35 0 1487956 Corynebacterium sp. NML98-0116 1 species 702967 35 0 1223514 0 92 Corynebacterium humireducens species 1 Corynebacterium stationis species 1 1705 45 0 0 53 1719 1 species Corynebacterium pseudotuberculosis 225326 0 80 Corynebacterium halotolerans species 1 76 0 35755 1 species Corynebacterium kutscheri 152794 54 0 Corynebacterium efficiens species 1 Corynebacterium simulans 1 species 146827 0 40 34 0 160386 species 1 Corynebacterium casei 64 0 187491 1 species Corynebacterium glaucum 136857 49 0 Corynebacterium testudinoris 1 species 89154 0 58 Corynebacterium terpenotabidum 1 species 571915 0 43 Corynebacterium mustelae 1 species Corynebacterium singulare species 1 161899 48 0 64 0 1121358 species 1 Corynebacterium doosanense 0 62 1652495 1 species Corynebacterium crudilactis 0 27 161879 species 1 Corynebacterium kroppenstedtii 55 0 169292 1 species Corynebacterium aurimucosum Corynebacterium phocae 1 species 161895 0 56 Corynebacterium frankenforstense species 1 1230998 94 0 1 species Corynebacterium ammoniagenes 0 40 1697 258224 43 0 Corynebacterium resistens species 1 35757 0 51 Corynebacterium cystitidis species 1 38305 0 85 Corynebacterium vitaeruminis 1 species 0 64 65058 1 species Corynebacterium ulcerans 0 61 108486 species 1 Corynebacterium falsenii 92706 69 0 [Brevibacterium] flavum species 1 1408191 32 0 Corynebacterium deserti species 1 0 31 28028 1 species Corynebacterium flavescens species 1 Corynebacterium diphtheriae 0 70 1717 85029 0 227 family 3 Dietzia genus 3 1 1 37914 0 227 1 no rank 0 137 2617939 1 species Dietzia sp. oral taxon 368 0 137 712270 Dietzia timorensis species 1 499555 89 0 54 0 697024 2 no rank Lawsonella 2 genus 1 1 1847725 54 0 Lawsonella clevelandensis species 1 1528099 0 53 9 family Gordoniaceae 4 1 838 0 85026 Gordonia 8 genus 2053 834 0 1 17 1004901 103 0 Gordonia iterans 1 species 129 0 1136941 1 species Gordonia phthalatica 2055 127 0 Gordonia terrae 1 species Gordonia polyisoprenivorans 1 species 84595 129 0 0 118 2054 species 1 Gordonia bronchialis 211 0 2657482 no rank 2 337191 0 144 Gordonia sp. KTR9 species 1 Gordonia sp. YC-JH1 species 1 2059875 67 0 1 59 85006 0 10978 Micrococcales order 127 0 422 145357 5 1 family 6 Dermacoccaceae Kytococcus genus 2 57499 94 0 1 3 Kytococcus sedentarius 1 species 1276 0 91 genus 1 140 0 57495 140 0 1274 species 1 Dermacoccus nishinomiyaensis Luteipulveratus 2 genus 1 2 745364 183 0 species 1 Luteipulveratus mongoliensis 0 181 571913 0 179 125316 1 family 1 genus 84756 0 179 Beutenbergia cavernae 1 species 84757 179 0 family 2 Brevibacteriaceae 0 197 85019 4 1 193 0 1696 genus 1 1703 193 0 Brevibacterium linens 1 species 2 1 615 0 85021 9 family Intrasporangiaceae genus 2 Serinicoccus 0 129 265976 2 1 Serinicoccus sp. JLT9 species 1 1758689 127 0 53457 0 180 1 9 Janibacter 2 genus Janibacter indicus 1 species 857417 171 0 Intrasporangium 2 genus 53357 151 0 1 1 0 150 53358 1 species Intrasporangium calvum genus 2 Arsenicicoccus 153 0 267408 1 1 2663846 0 152 1 no rank Arsenicicoccus sp. oral taxon 190 species 1 1658671 0 152 Microbacteriaceae family 43 85023 0 4142 1 33 337004 0 85 genus 1 1 species Microcella alkaliphila 0 85 279828 Microbacterium genus 14 33882 1474 0 1 18 75 0 300019 species 1 Microbacterium paludicola 162426 0 110 Microbacterium hominis 1 species 0 120 2033 1 species Microbacterium testaceum 84292 110 0 Microbacterium chocolatum 1 species species 1 Microbacterium aurum 110 0 36805 no rank 8 0 931 2609290 92 0 1696072 1 species Microbacterium sp. CGR1 1938334 0 103 Microbacterium sp. TPU 3598 species 1 0 144 1906742 1 species Microbacterium sp. BH-3-3-3 Microbacterium sp. PAMC 28756 1 species 1795053 0 86 225 0 1714373 1 species Microbacterium sp. No. 7 106 0 2103230 1 species Microbacterium sp. str. 'China' 1 species Microbacterium sp. XT11 90 0 367477 85 0 1916917 species 1 Microbacterium sp. 1.5R 33877 0 162 1 genus 453304 0 162 Agromyces aureus 1 species no rank 3 145 0 1655488 1655489 0 145 3 clade 1 1 529883 0 145 Rhodoluna 3 genus 1 species Rhodoluna lacicola 76 0 529884 species 1 Candidatus Rhodoluna planktonica 0 68 535712 genus 1 127 0 518733 Microterricola viridarii species 1 412690 0 127 Rathayibacter 3 genus 1 1 33886 0 192 0 87 145458 species 1 Rathayibacter toxicus Rathayibacter tritici species 1 33888 104 0 1759331 0 128 genus 1 species 1 Cnuibacter physcomitrellae 128 0 1619308 5 1 0 327 2034 genus 4 Curtobacterium 69373 136 0 Curtobacterium pusillum species 1 186 0 257496 no rank 2 1 species Curtobacterium sp. BH-2-1-1 0 92 1905847 species 1 Curtobacterium sp. MR_MD2014 0 94 1561023 1 genus 110932 0 203 species 1 Leifsonia xyli 0 203 1575 3 1 0 215 69578 3 genus Cryobacterium Cryobacterium arcticum species 1 670052 0 123 2649013 0 89 1 no rank 1978566 0 89 Cryobacterium sp. LW097 1 species 0 339 447237 1 1 genus 2 Frondihabitans 2626248 0 338 1 no rank 1795630 338 0 Frondihabitans sp. PAMC 28766 species 1 Clavibacter genus 6 1 11 1573 0 616 28447 605 0 1 139 Clavibacter michiganensis species 5 subspecies 1 Clavibacter capsici 0 109 1874630 33014 108 0 Clavibacter insidiosus 1 subspecies Clavibacter nebraskensis subspecies 1 31963 0 107 1 subspecies Clavibacter sepedonicus 142 0 31964 genus 1 1705353 48 0 Aurantimicrobium minutum 1 species 708131 48 0 1 genus 0 48 1434032 Pontimonas salivibrio species 1 1159327 0 48 family 2 0 162 145360 0 162 60919 1 1 genus 2 Sanguibacter 1 species Sanguibacter keddieii 161 0 60920 family 1 85022 35 0 1 genus 43673 0 35 0 35 43674 species 1 Jonesia denitrificans 0 65 85018 1 family 1862 0 65 1 genus Dermatophilus congolensis species 1 1863 65 0 Promicromonosporaceae 8 family 1 21 85017 0 909 Isoptericola 3 genus 1 2 254250 0 324 0 158 372663 species 1 Isoptericola dokdonensis Isoptericola variabilis species 1 139208 164 0 3 1 0 185 186188 genus 2 Xylanimonas Xylanimonas cellulosilytica 1 species 186189 0 182 0 379 157920 2 genus 1710 179 0 Cellulosimicrobium cellulans 1 species no rank 1 0 200 2624466 200 0 1980001 1 species Cellulosimicrobium sp. TH-20 Cellulomonadaceae 6 family 1 3 85016 604 0 1707 0 601 1 10 Cellulomonas 5 genus 1 species Cellulomonas gilvus 133 0 11 1711 0 167 Cellulomonas flavigena 1 species 2620175 134 0 no rank 1 2003551 0 134 Cellulomonas sp. PSBB021 species 1 0 157 1708 species 1 Cellulomonas fimi 1268 2542 0 1 33 Micrococcaceae family 36 57 0 2078575 genus 1 0 57 1618207 species 1 Arthrobacter sp. IHBB 11108 57493 283 0 1 1 Kocuria genus 4 72000 0 80 Kocuria rhizophila species 1 112 0 446860 1 species Kocuria flava 71999 90 0 Kocuria palustris 1 species 1868332 53 0 genus 1 Neomicrococcus aestuarii species 1 556325 0 53 genus 2 Glutamicibacter 85 0 1742989 3 1 1 species Glutamicibacter arilaitensis 0 82 256701 0 25 1645 1 genus Renibacterium salmoninarum 1 species 1646 0 25 2 genus Sinomonas 0 147 596707 1 1 1 species Sinomonas atrocyanea 146 0 37927 15 genus Arthrobacter 1293 0 1663 41 1 1 species Arthrobacter crystallopoietes 105 0 37928 656366 0 146 Arthrobacter alpinus 1 species 12 no rank 1001 0 235627 Arthrobacter sp. U41 species 1 1849032 84 0 Arthrobacter sp. Rue61a species 1 1118963 0 55 0 170 2079227 1 species Arthrobacter sp. PGP41 1690248 77 0 Arthrobacter sp. LS16 species 1 species 1 Arthrobacter sp. YN 0 61 2020486 Arthrobacter sp. QXT-31 species 1 1357915 0 84 290399 83 0 Arthrobacter sp. FB24 species 1 0 69 1652545 1 species Arthrobacter sp. YC-RL1 Arthrobacter sp. ZXY-2 species 1 1806905 71 0 Arthrobacter sp. ATCC 21022 1 species 1771959 68 0 species 1 Arthrobacter sp. ERGS1:01 0 103 1704044 1 species Arthrobacter sp. PAMC 25486 0 76 1494608 1 genus 1742992 0 93 Paenarthrobacter aurescens species 1 43663 93 0 32207 0 108 genus 2 1 species Rothia mucilaginosa 61 0 43675 0 47 2047 species 1 Rothia dentocariosa Pseudarthrobacter genus 4 1742993 281 0 1 3 361575 111 0 Pseudarthrobacter phenanthrenivorans species 1 Pseudarthrobacter sulfonivorans species 1 121292 0 72 1 species Pseudarthrobacter chlorophenolicus 0 95 85085 1 1 1269 84 0 Micrococcus genus 2 Micrococcus luteus 1 species 1270 83 0 577468 69 0 no rank 1 2038 69 0 1 genus 0 69 2039 1 species Tropheryma whipplei Dermabacteraceae 10 family 85020 0 978 1 8 7 1 843 0 43668 genus 6 Brachybacterium 2623841 117 0 no rank 1 Brachybacterium sp. P6-10-X1 1 species 1903186 0 117 2017485 122 0 Brachybacterium sp. VR2415 species 1 43669 0 110 Brachybacterium faecium species 1 Brachybacterium ginsengisoli species 1 1331682 0 146 2017484 341 0 Brachybacterium sp. VM2412 1 species 36739 0 58 genus 1 1 species Dermabacter vaginalis 58 0 1630135 14 1 0 69 472568 2 genus Devriesea Devriesea agamarum species 1 472569 0 55 Micromonosporales 19 order 85008 0 2721 1 2 28056 0 2719 1 61 Micromonosporaceae 18 family 1865 0 1197 1 10 Actinoplanes genus 6 0 680 2626549 3 no rank 649831 250 0 Actinoplanes sp. N902-109 1 species species 1 Actinoplanes sp. SE50/110 0 215 134676 2033844 215 0 Actinoplanes sp. SE50 1 species 1 species Actinoplanes missouriensis 267 0 1866 1 species Actinoplanes friuliensis 0 240 196914 Salinispora 3 genus 168694 213 0 1 7 Salinispora tropica species 1 168695 78 0 Salinispora arenicola species 1 168697 128 0 4 genus Micromonospora 595 0 1873 3 1 no rank 1 2617518 0 210 Micromonospora sp. L5 species 1 648999 210 0 Verrucosispora maris species 1 1003110 0 189 Micromonospora aurantiaca 1 species 47850 0 193 genus 4 Plantactinospora 9 1 653 0 673534 0 644 2631981 no rank 3 Plantactinospora sp. KBS50 1 species 2024580 205 0 Plantactinospora sp. BB1 1 species 2071627 218 0 Plantactinospora sp. BC1 species 1 2108470 0 221 order 3 96 0 1643683 0 96 85032 1 1 family 3 Acidothermaceae genus 2 Acidothermus 1 1 0 95 28048 Acidothermus cellulolyticus species 1 28049 0 94 8 order Geodermatophilales 5 1 529 0 1643682 1 30 85030 524 0 Geodermatophilaceae family 7 Geodermatophilus 2 genus 1860 172 0 1 6 1861 166 0 Geodermatophilus obscurus species 1 1 4 38501 0 146 Blastococcus genus 2 Blastococcus saxobsidens species 1 138336 142 0 Modestobacter genus 2 1 3 88138 0 176 173 0 477641 species 1 Modestobacter marinus Bifidobacteriales 24 order 1 6 85004 1313 0 family 23 Bifidobacteriaceae 8 1 1307 0 31953 1 genus 0 40 196081 40 0 78259 1 species Scardovia inopinata 2701 207 0 genus 1 Gardnerella vaginalis 1 species 2702 207 0 genus 1 196082 0 23 78258 23 0 Parascardovia denticolens 1 species Bifidobacterium 19 genus 1678 0 1029 1 21 species 1 Bifidobacterium pseudolongum 104 0 1694 638619 72 0 Bifidobacterium actinocoloniiforme species 1 Bifidobacterium choerinum 1 species 35760 87 0 1 species Bifidobacterium scardovii 0 75 158787 37 0 1684 species 1 Bifidobacterium asteroides 0 64 28025 1 species Bifidobacterium animalis Bifidobacterium indicum species 1 1691 29 0 species 1 Bifidobacterium angulatum 0 47 1683 33905 45 0 Bifidobacterium thermophilum species 1 0 67 1685 species 1 Bifidobacterium breve 1 species Bifidobacterium dentium 0 27 1689 1681 0 62 Bifidobacterium bifidum 1 species Bifidobacterium longum species 1 216816 129 0 28026 0 35 Bifidobacterium pseudocatenulatum 1 species species 1 Bifidobacterium adolescentis 0 48 1680 species 2 Bifidobacterium catenulatum 21 1 0 62 1686 Bifidobacterium kashiwanohense subspecies 1 630129 0 41 1 species Bifidobacterium coryneforme 18 0 1687 1 17 85010 0 6267 Pseudonocardiales 41 order 2070 0 6250 1 67 Pseudonocardiaceae family 40 1 1 249 0 1835 2 genus Saccharopolyspora 248 0 1836 species 1 Saccharopolyspora erythraea Alloactinosynnema genus 2 674734 0 175 1 5 2636053 0 170 no rank 1 1653480 170 0 Alloactinosynnema sp. L-07 1 species 1524 0 1847 32 1 genus 8 Pseudonocardia 2619320 0 1227 no rank 6 species 1 Pseudonocardia sp. HH130630-07 0 238 1690815 0 251 445576 species 1 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. EC080625-04 1 species 1096868 175 0 1 species Pseudonocardia sp. HH130629-09 184 0 1641402 0 181 1096856 species 1 Pseudonocardia sp. EC080619-01 1688404 198 0 Pseudonocardia sp. EC080610-09 species 1 Pseudonocardia dioxanivorans species 1 240495 0 265 1 1 2071 0 272 Saccharothrix genus 2 103731 271 0 Saccharothrix espanaensis 1 species 1 14 65496 0 766 Actinoalloteichus genus 6 0 309 2644606 no rank 2 2072503 146 0 Actinoalloteichus sp. AHMU CJ021 1 species 163 0 1612551 species 1 Actinoalloteichus sp. GBA129-24 1 species Actinoalloteichus sp. ADI127-7 0 182 1612552 species 1 Actinoalloteichus hoggarensis 152 0 1470176 340345 109 0 Actinoalloteichus hymeniacidonis species 1 10 1 528 0 40566 3 genus Actinosynnema 0 273 40567 1 species Actinosynnema mirum 0 245 42197 1 species Actinosynnema pretiosum 2 genus Lentzea 267 0 165301 6 1 261 0 1586287 species 1 Lentzea guizhouensis 1 30 1813 0 1682 Amycolatopsis 7 genus species 1 Amycolatopsis methanolica 0 209 1814 0 472 31958 species 1 Amycolatopsis orientalis no rank 2 436 0 2618356 1 species Amycolatopsis sp. AA4 0 193 1896961 species 1 Amycolatopsis sp. BJA-103 0 243 1911175 Amycolatopsis japonica species 1 208439 0 250 33910 0 285 Amycolatopsis mediterranei species 1 1 4 43356 219 0 Kutzneria genus 2 215 0 43357 1 species Kutzneria albida Prauserella genus 2 142577 166 0 1 1 1 species Prauserella marina 0 165 530584 genus 1 1851 75 0 1852 0 75 Saccharomonospora viridis species 1 genus 2 Kibdelosporangium 4 1 260 0 2029 860235 256 0 Kibdelosporangium phytohabitans 1 species 85012 0 1572 1 15 Streptosporangiales order 16 1 1 2012 151 0 Thermomonosporaceae 3 family Thermomonospora 2 genus 1 2 2019 150 0 2020 0 148 Thermomonospora curvata species 1 family 7 Nocardiopsaceae 660 0 83676 6 1 Nocardiopsis genus 4 1 3 2013 580 0 169 0 280236 1 species Nocardiopsis gilva 1 species Nocardiopsis alba 152 0 53437 2014 256 0 Nocardiopsis dassonvillei species 1 1 1 83677 0 74 Thermobifida genus 2 73 0 2021 species 1 Thermobifida fusca Streptosporangiaceae family 5 2004 0 746 1 3 0 342 2000 3 1 genus 2 Streptosporangium 339 0 2001 1 species Streptosporangium roseum genus 2 Nonomuraea 2 1 401 0 83681 2593643 399 0 1 no rank 1 species Nonomuraea sp. ATCC 55076 399 0 1909395 84995 196 0 1 1 Rubrobacteria 6 class Rubrobacterales 5 order 84996 0 195 1 10 84997 185 0 1 3 Rubrobacteraceae family 4 1 4 42255 182 0 Rubrobacter 3 genus 42256 0 79 Rubrobacter radiotolerans 1 species species 1 Rubrobacter xylanophilus 0 99 49319 1752188 0 470 4 no rank Actinobacteria bacterium IMCC19121 1 species 1848754 0 148 0 148 1848756 1 species Actinobacteria bacterium IMCC26103 1848255 0 76 Actinobacteria bacterium IMCC25003 1 species Actinobacteria bacterium IMCC26077 species 1 1848755 0 98 84992 845 0 6 class Acidimicrobiales order 6 84993 0 845 1 10 Acidimicrobiaceae 3 family 84994 0 164 1 2 Acidimicrobium 2 genus 1 14 53634 162 0 1 species Acidimicrobium ferrooxidans 0 148 53635 2 family 0 671 2448023 Ilumatobacter 2 genus 682522 0 671 1 4 Ilumatobacter coccineus species 1 467094 667 0 3 class 1497346 0 659 order 3 Solirubrobacterales 659 0 588673 13 1 family 2 0 646 320583 0 646 191494 2 1 2 genus Conexibacter 644 0 191495 1 species Conexibacter woesei 24 class Coriobacteriia 1449 0 84998 10 1 84999 0 521 1 6 Coriobacteriales order 9 165 0 84107 family 3 1 genus 36 0 33870 36 0 33871 1 species Coriobacterium glomerans 1 genus 102106 0 57 74426 0 57 Collinsella aerofaciens 1 species no rank 1 0 72 84113 1531429 72 0 Coriobacteriaceae bacterium 68-1-3 1 species 5 family Atopobiaceae 2 1 350 0 1643824 133925 232 0 3 genus Olsenella sp. Marseille-P2300 species 1 1805478 0 100 133926 0 64 Olsenella uli 1 species no rank 1 2638792 0 68 species 1 Olsenella sp. oral taxon 807 0 68 712411 1 genus 2767353 116 0 species 1 Atopobium parvulum 0 116 1382 2 1 0 918 1643822 order 14 Eggerthellales Eggerthellaceae family 13 1643826 0 916 1 12 1 genus 0 40 79603 79604 0 40 Denitrobacterium detoxificans 1 species 1 13 644652 235 0 Gordonibacter 3 genus 1 species Gordonibacter massiliensis 0 115 1841863 1 species Gordonibacter urolithinfaciens 0 107 1335613 0 62 84162 1 genus Cryptobacterium curtum species 1 84163 0 62 Eggerthella 3 genus 84111 0 213 1 1 136 0 84112 species 1 Eggerthella lenta no rank 1 0 76 2648737 502558 76 0 Eggerthella sp. YY7918 1 species genus 2 Slackia 1 1 70 0 84108 69 0 84110 1 species Slackia heliotrinireducens 447020 91 0 genus 1 0 91 446660 species 1 Adlercreutzia equolifaciens 1981050 0 193 1 genus Phoenicibacter massiliensis 1 species 1944646 193 0 1453 0 200795 28 phylum 189775 0 191 1 2 Thermomicrobia class 5 2 subclass 85000 0 130 85001 0 130 2 order 255728 0 130 2 suborder family 2 Sphaerobacteraceae 4 1 0 130 85002 genus 1 0 126 2056 Sphaerobacter thermophilus species 1 2057 0 126 2 1 59 0 189776 order 2 Thermomicrobiales family 1 57 0 189777 1 genus 499 57 0 57 0 500 1 species Thermomicrobium roseum 289 0 301297 6 class 670486 0 105 1 1 Dehalogenimonas genus 3 552810 0 56 Dehalogenimonas lykanthroporepellens 1 species Dehalogenimonas formicexedens 1 species 1839801 0 48 order 3 Dehalococcoidales 0 184 1202465 1 1 family 2 0 183 1202464 genus 2 61434 0 183 1 no rank 0 47 237581 1522671 0 47 Dehalococcoides sp. UCH007 species 1 136 0 61435 species 1 Dehalococcoides mccartyi 292625 0 171 class 3 order 3 171 0 292629 family 3 292628 0 171 no rank 1 1324991 0 49 Anaerolineaceae bacterium oral taxon 439 species 1 1889813 49 0 0 54 233189 1 genus 1 species Anaerolinea thermophila 0 54 167964 genus 1 0 68 2019482 0 68 1986204 1 species Brevefilum fermentans class 2 0 119 475962 2 order Caldilineales 1 1 0 119 475963 0 118 475964 1 family 118 0 233191 1 genus Caldilinea aerophila species 1 133453 0 118 0 184 1382928 class 3 1382929 184 0 order 3 1382930 0 184 1 1 Ardenticatenaceae 3 family 1988031 0 183 1 2 Candidatus Promineofilum genus 2 Candidatus Promineofilum breve 1 species 1806508 0 181 Chloroflexia class 9 32061 0 499 1 1 Chloroflexales order 8 1 3 32064 0 498 suborder 3 0 182 1508595 1508635 0 182 3 family genus 3 Roseiflexus 182 0 120961 2 1 120962 0 115 Roseiflexus castenholzii 1 species 2609473 0 65 1 no rank Roseiflexus sp. RS-1 1 species 357808 0 65 4 suborder 0 313 1508594 1106 313 0 4 family Chloroflexus 4 genus 1107 313 0 1 8 200 0 1108 100 1 2 species Chloroflexus aurantiacus 480224 100 0 Chloroflexus sp. Y-400-fl strain 1 0 105 152260 1 species Chloroflexus aggregans phylum 19 57723 0 999 876 0 204432 2 1 class 17 Acidobacteriia order 12 Acidobacteriales 6 1 678 0 204433 family 11 Acidobacteriaceae 672 0 204434 8 1 Granulicella genus 3 940557 202 0 1 3 Granulicella mallensis species 1 940614 0 98 1 species Granulicella tundricola 0 101 940615 Acidobacterium genus 2 1 2 33973 0 155 1 species Acidobacterium capsulatum 153 0 33075 Candidatus Koribacter genus 2 1 3 658061 101 0 species 1 Candidatus Koribacter versatilis 0 98 658062 392733 0 206 1 2 Terriglobus genus 3 Terriglobus saanensis 1 species 870903 103 0 Terriglobus roseus 1 species 392734 0 101 332160 0 196 1 5 Solibacterales 4 order Solibacteraceae family 3 332161 0 191 1 2 Candidatus Solibacter genus 2 1 5 332162 189 0 0 184 332163 species 1 Candidatus Solibacter usitatus 2 class 1562566 123 0 Chloracidobacterium 2 genus 1 3 458032 0 123 Chloracidobacterium thermophilum species 1 458033 0 120 14 phylum 0 1152 40117 14 class Nitrospira 5 1 0 1152 203693 Nitrospirales order 13 189778 0 1147 1 7 Nitrospiraceae family 12 189779 1140 0 1 9 260 0 179 3 1 genus 4 Leptospirillum species group 1 261385 81 0 species 1 Leptospirillum sp. Group II 'CF-1' 81 0 1660083 1 species group 655606 103 0 180 103 0 Leptospirillum ferrooxidans 1 species species group 1 73 0 261386 178606 73 0 Leptospirillum ferriphilum species 1 1234 278 0 1 3 Nitrospira 5 genus 1715989 56 0 Candidatus Nitrospira inopinata species 1 Nitrospira moscoviensis species 1 42253 0 78 1 species Nitrospira japonica 67 0 1325564 74 0 330214 1 species Nitrospira defluvii 593 0 28261 2 1 2 genus Thermodesulfovibrio 591 0 28262 species 1 Thermodesulfovibrio yellowstonii 191 0 2498710 clade 1 67814 0 191 1 phylum 1 class 693071 191 0 1 order 693072 0 191 1 family 693073 191 0 genus 1 693074 0 191 Caldisericum exile 1 species 693075 0 191 3 no rank 0 352 2323 1783234 352 0 3 clade 1 phylum 39 0 95818 39 0 1895827 no rank 1 1 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 39 2056494 clade 2 95901 313 0 0 313 2497643 class 2 2 order 2497644 313 0 family 2 313 0 2497645 genus 2 Candidatus Babela 313 0 1551504 7 1 1 species Candidatus Babela massiliensis 0 306 673862 phylum 6 677 0 68297 203486 0 677 1 1 Dictyoglomia class 6 0 676 203487 3 1 5 order Dictyoglomales 1 7 203488 673 0 Dictyoglomaceae family 4 Dictyoglomus genus 3 1 2 13 0 666 1 species Dictyoglomus turgidum 363 0 513050 Dictyoglomus thermophilum species 1 14 301 0 25 phylum 32066 13027 0 17 1 0 13027 203490 class 25 Fusobacteriia 24 order Fusobacteriales 13010 0 203491 16 1 2 1 0 3182 1129771 11 family Leptotrichiaceae 1 genus 34104 565 0 1 species Streptobacillus moniliformis 0 565 34105 168808 0 380 1 1 Sneathia 2 genus Sneathia amnii 1 species 187101 379 0 2 genus Sebaldella 0 370 32068 1 1 species 1 Sebaldella termitidis 369 0 826 Leptotrichia genus 5 1 17 32067 0 1865 species 1 Leptotrichia buccalis 0 507 40542 2633022 0 1341 3 no rank Leptotrichia sp. oral taxon 498 species 1 712368 416 0 Leptotrichia sp. oral taxon 212 species 1 712357 0 427 1785996 498 0 Leptotrichia sp. oral taxon 847 species 1 12 family Fusobacteriaceae 1 1 9812 0 203492 genus 9 Fusobacterium 0 9470 848 60 1 850 588 0 Fusobacterium mortiferum 1 species 1 species Fusobacterium nucleatum 0 3461 851 species 1 Fusobacterium ulcerans 0 626 861 860 1855 0 Fusobacterium periodonticum 1 species 0 1068 1583098 species 1 Fusobacterium hwasookii 856 1184 0 Fusobacterium varium species 1 Fusobacterium gonidiaformans species 1 849 0 379 1 species Fusobacterium necrophorum 0 249 859 genus 2 Ilyobacter 2 1 341 0 167639 1 species Ilyobacter polytropus 0 339 167642 508458 336 0 phylum 8 336 0 649775 8 class 336 0 649776 1 1 8 order Synergistales Synergistaceae 7 family 649777 335 0 1 2 genus 1 0 61 336260 336261 61 0 Thermovirga lienii species 1 1 genus 49894 65 0 Acetomicrobium mobile species 1 97477 65 0 2 genus Aminobacterium 0 89 81466 7 1 82 0 81468 1 species Aminobacterium colombiense genus 1 67 0 508459 Cloacibacillus porcorum species 1 1197717 0 67 81461 51 0 genus 1 1 species Thermanaerovibrio acidaminovorans 0 51 81462 1783257 0 8048 82 clade phylum 3 0 169 256845 Lentisphaeria 3 class 1313211 169 0 1 3 1 9 278082 0 166 Victivallales order 2 1 no rank 0 157 1674876 species 1 Victivallales bacterium CCUG 44730 0 157 2094242 134625 159 0 3 phylum class 3 0 159 1921781 159 0 1921782 3 order Kiritimatiellaceae family 3 1 1 1921783 0 159 Kiritimatiella genus 2 1 2 1921784 0 158 0 156 1307763 1 species Kiritimatiella glycovorans 19 phylum 0 1657 204428 Chlamydiia 19 class 1 13 204429 1657 0 Chlamydiales 13 order 1 8 51291 0 1168 family 12 809 0 1160 no rank 12 0 1160 1113537 Chlamydia genus 12 810 0 1160 1 15 Chlamydia pecorum species 1 85991 0 122 1 species Chlamydia abortus 0 90 83555 108 0 813 1 species Chlamydia trachomatis Chlamydia muridarum 1 species 83560 0 68 1 species Chlamydia caviae 0 121 83557 Chlamydia suis 1 species 83559 0 61 Chlamydia psittaci 1 species 83554 135 0 1 species Chlamydia felis 108 0 83556 95 0 1457141 species 1 Chlamydia avium 0 108 1457153 1 species Chlamydia gallinacea 83558 0 129 Chlamydia pneumoniae 1 species order 5 1963360 476 0 family 1 91 0 92712 genus 1 34093 0 91 83561 91 0 Simkania negevensis species 1 family 1 92714 0 95 95 0 71666 1 genus species 1 Waddlia chondrophila 0 95 71667 92713 0 290 1 1 Parachlamydiaceae family 3 genus 1 282132 0 125 species 1 Candidatus Protochlamydia naegleriophila 125 0 389348 1 genus 164 0 83551 83552 0 164 Parachlamydia acanthamoebae 1 species phylum 35 Planctomycetes 1 1 0 4241 203682 24 class Planctomycetia 4 1 0 3158 203683 2691356 766 0 order 6 5 1 766 0 1763524 family 6 Isosphaeraceae 1 genus 0 326 1763521 1387353 0 326 Paludisphaera borealis 1 species Isosphaera genus 2 127 0 161 1 5 156 0 128 species 1 Isosphaera pallida 0 274 466152 1 1 genus 2 Singulisphaera species 1 Singulisphaera acidiphila 273 0 466153 1 27 112 0 1549 Planctomycetales 10 order Planctomycetaceae 9 family 126 0 1522 1 9 genus 1 0 111 1649480 1 species Planctopirus limnophila 111 0 120 Planctomyces 3 genus 1 2 118 0 800 0 798 2648843 2 no rank Planctomyces sp. SH-PL14 species 1 1632864 483 0 1636152 315 0 Planctomyces sp. SH-PL62 1 species 1 3 1936111 311 0 Fuerstia 2 genus 1891926 308 0 Fuerstia marisgermanicae species 1 Rubinisphaera 2 genus 1649490 0 291 1 1 Rubinisphaera brasiliensis 1 species 119 0 290 2691354 525 0 order 4 family 2 2691357 0 431 0 185 123 genus 1 0 185 125 species 1 Pirellula staleyi genus 1 246 0 265488 246 0 265606 1 species Rhodopirellula baltica 2691358 0 94 2 family Thermogutta genus 2 1 1 1676125 0 94 1331910 93 0 Thermogutta terrifontis species 1 314 0 2691355 order 3 1914233 0 314 1 2 Gemmataceae 3 family Gemmata genus 2 1 1 113 0 312 0 311 2622970 no rank 1 species 1 Gemmata sp. SH-PL17 0 311 1630693 2517206 0 573 3 class Candidatus Brocadiales 3 order 1 4 1127829 0 573 family 2 Candidatus Brocadiaceae 569 0 1127830 1 1 1 genus 380738 0 568 0 568 174633 1 species Candidatus Kuenenia stuttgartiensis Phycisphaerae 7 class 1 1 666505 509 0 2 order 0 186 2483366 2483367 186 0 family 2 genus 2 2483368 186 0 88 0 1941349 1 species Phycisphaerae bacterium ST-PulAB-D4 1 species Phycisphaerae bacterium L21-RPul-D3 0 98 1940790 1 3 666506 322 0 Phycisphaerales order 4 Phycisphaeraceae 3 family 666507 0 319 1 2 0 317 666508 2 1 2 genus Phycisphaera Phycisphaera mikurensis 1 species 547188 315 0 74201 1822 0 1 1 Verrucomicrobia phylum 22 no rank 2 417295 289 0 176 0 2026799 1 species Verrucomicrobia bacterium Verrucomicrobia bacterium IMCC26134 species 1 1637999 0 113 0 50 134549 1 class 0 50 134550 genus 1 no rank 1 0 50 2648876 species 1 Candidatus Xiphinematobacter sp. Idaho Grape 50 0 1704307 5 class 203494 0 234 Verrucomicrobiales 5 order 48461 0 234 1 6 0 228 1647988 2 1 4 family Akkermansiaceae 239934 0 226 1 9 Akkermansia genus 3 1679444 0 119 Akkermansia glycaniphila 1 species species 1 Akkermansia muciniphila 0 98 239935 1 1 414999 945 0 Opitutae class 10 order 2 354 0 415001 2 family Puniceicoccaceae 0 354 415002 1 1 1 genus 353 0 442430 Coraliomargarita akajimensis 1 species 395922 353 0 order 7 Opitutales 3 1 590 0 415000 134623 0 587 1 8 Opitutaceae 6 family 2 genus Opitutus 0 171 178440 1 1 107709 0 170 Opitutus terrae 1 species 1961799 0 184 1 1 Lacunisphaera 2 genus 1 species Lacunisphaera limnophila 183 0 1838286 1 no rank 224 0 278955 Opitutaceae bacterium TAV5 1 species 794903 224 0 1955630 303 0 3 class 717963 303 0 order 3 303 0 717964 family 3 511745 0 303 1 2 Methylacidiphilum genus 3 0 94 511746 1 species Methylacidiphilum infernorum 591154 0 207 Methylacidiphilum fumariolicum 1 species 200783 0 2755 phylum 24 Aquificae 24 class 187857 0 2755 1 6 1 1 32069 0 2298 Aquificales 19 order 11 family Aquificaceae 3 1 1060 0 64898 6 genus Hydrogenobaculum 0 888 168657 18 1 no rank 5 2622382 870 0 Hydrogenobaculum sp. SHO species 1 547145 174 0 0 174 380749 1 species Hydrogenobaculum sp. Y04AAS1 Hydrogenobaculum sp. 3684 1 species 547143 174 0 0 174 547146 1 species Hydrogenobaculum sp. SN Hydrogenobaculum sp. HO 1 species 547144 0 174 939 0 70 genus 1 species 1 Hydrogenobacter thermophilus 0 70 940 1 genus 0 38 2713 Aquifex aeolicus 1 species 63363 38 0 2 genus 75905 0 61 75906 0 34 Thermocrinis ruber species 1 136094 27 0 Thermocrinis albus 1 species Hydrogenothermaceae 5 family 1 1 224027 0 1115 0 871 212790 11 1 3 genus Sulfurihydrogenibium 0 403 309806 species 1 Sulfurihydrogenibium azorense no rank 1 0 457 2619248 1 species Sulfurihydrogenibium sp. YO3AOP1 0 457 436114 243 0 182899 genus 1 species 1 Persephonella marina 0 243 309805 2 no rank 90150 0 122 2 genus Thermosulfidibacter 122 0 412592 1 1 412593 121 0 Thermosulfidibacter takaii species 1 1 2 1485951 0 451 Desulfurobacteriales 4 order family 3 Desulfurobacteriaceae 449 0 558314 10 1 33 0 171868 genus 1 species 1 Thermovibrio ammonificans 0 33 228745 genus 1 64159 406 0 64160 406 0 Desulfurobacterium thermolithotrophum 1 species 1224 0 520992 1 102 Proteobacteria 1981 phylum subphylum 185 38080 0 68525 22 1 0 22630 29547 class 70 Epsilonproteobacteria Campylobacterales order 65 1 43 213849 22158 0 Campylobacteraceae family 41 72294 0 18249 1 32 2321108 0 5040 no rank 5 genus 3 Arcobacter 2662 0 28196 31 1 28199 1031 0 Arcobacter nitrofigilis species 1 Arcobacter butzleri species 1 28197 1600 0 1 genus 2321187 0 1184 1184 0 1850254 1 species Arcobacter sp. LPB0137 2321207 0 1194 1 no rank 1194 0 944547 species 1 Arcobacter sp. L genus 9 Sulfurospirillum 1412 0 57665 17 1 3 no rank 2618290 0 711 220622 0 203 Sulfurospirillum sp. JPD-1 1 species species 1 Sulfurospirillum sp. SL2-1 0 222 1986224 1581011 286 0 Sulfurospirillum sp. UCH001 1 species 0 125 66821 species 1 Sulfurospirillum multivorans species 1 Sulfurospirillum halorespirans 132 0 194424 65553 0 157 Sulfurospirillum deleyianum species 1 366522 90 0 Sulfurospirillum cavolei 1 species 44674 0 180 Sulfurospirillum barnesii species 1 genus 26 Campylobacter 87 1 11765 0 194 1965231 717 0 Campylobacter pinnipediorum 1 species Campylobacter volucris species 1 1031542 0 593 71 0 824 species 1 Campylobacter gracilis 558 0 497724 1 species Campylobacter subantarcticus 0 1078 197 1 species Campylobacter jejuni Campylobacter coli species 1 195 0 790 Campylobacter lanienae 1 species 75658 211 0 species 1 Campylobacter lari 1310 0 201 0 274 76517 1 species Campylobacter hominis 198 0 336 Campylobacter hyointestinalis 1 species 28898 185 0 Campylobacter helveticus 1 species 1 species Campylobacter fetus 0 485 196 1 species Campylobacter avium 0 232 522485 245 0 1244531 species 1 Campylobacter iguaniorum 199 0 299 Campylobacter concisus species 1 0 365 374106 species 1 Campylobacter cuniculorum 1 species Campylobacter sputorum 0 821 206 no rank 4 2593542 0 1469 1 species Campylobacter sp. RM12175 0 316 1660076 1660073 236 0 Campylobacter sp. RM6137 1 species Campylobacter sp. RM16704 species 1 1500960 0 563 1660074 354 0 Campylobacter sp. RM8964 1 species 413 0 488546 1 species Campylobacter peloridis species 1 Campylobacter insulaenigrae 564 0 260714 Campylobacter curvus 1 species 200 60 0 827 602 0 Campylobacter ureolyticus species 1 Helicobacteraceae family 14 1 2 72293 2828 0 1 genus 0 62 843 844 62 0 Wolinella succinogenes species 1 209 2764 0 1 15 Helicobacter genus 12 species 1 Helicobacter mustelae 0 96 217 0 106 2593540 1 no rank 222136 106 0 Helicobacter sp. MIT 01-6242 species 1 species 1 Helicobacter acinonychis 94 0 212 species 1 Helicobacter himalayensis 0 95 1591088 37372 0 214 Helicobacter bilis 1 species 1250 0 210 species 1 Helicobacter pylori 213 172 0 Helicobacter cinaedi species 1 species 1 Helicobacter cetorum 0 315 138563 76936 133 0 Helicobacter typhlonius 1 species 214 0 61 Helicobacter felis species 1 213 0 32025 1 species Helicobacter hepaticus family 4 0 672 2771471 202746 0 602 1 8 Sulfurimonas 3 genus species 1 Sulfurimonas denitrificans 0 320 39766 species 1 Sulfurimonas autotrophica 274 0 202747 1 genus 0 70 286130 1 species Sulfuricurvum kujiense 0 70 148813 5 family 366 0 2771472 1 1 269260 73 0 Nitratifractor 2 genus 1 species Nitratifractor salsuginis 0 72 269261 genus 3 Sulfurovum 0 293 265570 16 1 206403 156 0 Sulfurovum lithotrophicum species 1 2646778 0 121 1 no rank 387093 121 0 Sulfurovum sp. NBC37-1 species 1 order 4 0 450 235899 2795691 0 137 family 2 269258 137 0 1 1 Nitratiruptor 2 genus 136 0 2624044 1 no rank Nitratiruptor sp. SB155-2 species 1 387092 136 0 family 2 313 0 224467 genus 2 Nautilia 0 313 191291 2 1 244787 311 0 Nautilia profundicola species 1 1 24 28221 0 15450 Deltaproteobacteria class 115 order 24 Desulfuromonadales 2216 0 69541 26 1 22 1 1498 0 213422 family 14 Geobacteraceae 33 1 1372 0 28231 11 genus Geobacter 0 97 1340425 species 1 Geobacter anodireducens 2 no rank 2627627 309 0 199 0 443143 species 1 Geobacter sp. M18 0 110 443144 1 species Geobacter sp. M21 Geobacter metallireducens species 1 28232 0 119 Geobacter lovleyi 1 species 313985 100 0 species 1 Geobacter uraniireducens 271 0 351604 Geobacter bemidjiensis 1 species 225194 133 0 1203471 0 77 Geobacter daltonii species 1 species 1 Geobacter pickeringii 0 147 345632 Geobacter sulfurreducens species 1 35554 0 86 392332 0 104 1 5 Geoalkalibacter genus 2 species 1 Geoalkalibacter subterraneus 0 99 483547 Desulfuromonadaceae family 9 213421 0 692 1 8 3 genus Desulfuromonas 1 1 0 302 890 0 164 1603606 1 species Desulfuromonas soudanensis 137 0 2614637 1 no rank Desulfuromonas sp. DDH964 1 species 1823759 0 137 Pelobacter 5 genus 18 0 382 1 17 1 no rank 84 0 2620299 species 1 Pelobacter sp. SFB93 84 0 1842532 19 85 0 Pelobacter carbinolicus 1 species species 1 Pelobacter propionicus 0 108 29543 1 species Pelobacter acetylenicus 88 0 29542 17 order Desulfobacterales 1800 0 213118 17 1 1 14 213121 0 643 Desulfobulbaceae 7 family 1 genus 893 0 114 1986146 114 0 Desulfobulbus sp. ORNL 1 species 1 3 109168 203 0 Desulfotalea genus 2 0 200 84980 species 1 Desulfotalea psychrophila Desulfurivibrio 2 genus 427922 94 0 1 1 1 species Desulfurivibrio alkaliphilus 93 0 427923 genus 1 53318 0 218 0 218 65555 species 1 Desulfocapsa sulfexigens 9 family Desulfobacteraceae 1140 0 213119 7 1 1 3 2295 0 161 Desulfobacterium 2 genus species 1 Desulfobacterium autotrophicum 158 0 2296 1 genus 0 391 28222 Desulfobacula toluolica species 1 28223 391 0 218207 0 359 1 4 Desulfatibacillum genus 2 259354 355 0 Desulfatibacillum alkenivorans species 1 1 5 896 222 0 Desulfococcus 3 genus 1 species Desulfococcus oleovorans 116 0 181663 101 0 897 1 species Desulfococcus multivorans order 35 Myxococcales 75 1 0 7897 29 7 suborder 80812 2633 0 4 family Polyangiaceae 2051 0 49 9 1 0 422 50 1 genus 422 0 52 species 1 Chondromyces crocatus Sorangium 2 genus 1 10 39643 0 1620 Sorangium cellulosum species 1 56 1610 0 family 3 Sandaracinaceae 4 1 0 582 1055686 genus 2 Sandaracinus 2 1 0 578 1055688 species 1 Sandaracinus amylolyticus 0 576 927083 4551 0 80811 suborder 24 Anaeromyxobacteraceae family 5 1524215 0 1116 1 2 Anaeromyxobacter genus 4 1 16 161492 1114 0 464 0 161493 1 species Anaeromyxobacter dehalogenans 2 no rank 634 0 2620896 species 1 Anaeromyxobacter sp. K 305 0 447217 Anaeromyxobacter sp. Fw109-5 1 species 404589 329 0 29 1 0 1331 39 8 family Archangiaceae genus 2 Melittangium 0 266 44 3 1 0 263 83453 1 species Melittangium boletus genus 2 Archangium 494 0 47 1 1 1 species Archangium gephyra 0 493 48 1 1 208 0 40 2 genus Stigmatella 207 0 41 1 species Stigmatella aurantiaca 42 0 334 1 genus species 1 Cystobacter fuscus 334 0 43 1 12 31 0 1892 Myxococcaceae family 9 3 genus Corallococcus 586 0 83461 13 1 Corallococcus coralloides 1 species 184914 0 278 0 295 35 1 species Myxococcus macrosporus 1294 0 32 45 1 genus 5 Myxococcus 1 species Myxococcus stipitatus 0 263 83455 Myxococcus xanthus 1 species 34 0 185 0 254 1297742 1 species Myxococcus hansupus 33 547 0 Myxococcus fulvus 1 species family 2 1524213 212 0 212 0 1524214 3 1 genus 2 Vulgatibacter 0 209 1391653 species 1 Vulgatibacter incomptus suborder 3 224462 638 0 1 3 224464 638 0 Kofleriaceae 3 family 1 4 162027 635 0 Haliangium genus 2 Haliangium ochraceum 1 species 80816 631 0 1 8 213462 0 382 Syntrophobacterales 8 order family 2 Syntrophobacteraceae 2 1 109 0 213465 1 genus 29526 107 0 107 0 119484 1 species Syntrophobacter fumaroxidans family 5 Syntrophaceae 265 0 213468 5 1 1 genus 0 77 2357 2358 77 0 Desulfomonile tiedjei species 1 1 genus 60892 0 85 85 0 60893 species 1 Desulfobacca acetoxidans 43773 98 0 1 2 Syntrophus genus 2 316277 96 0 Syntrophus aciditrophicus species 1 4 order 213113 0 748 117942 748 0 1 2 Desulfurellaceae 4 family genus 2 Desulfurella 516 0 33001 1 1 33002 515 0 Desulfurella acetivorans 1 species 1 genus 0 230 84404 Hippea maritima 1 species 84405 230 0 Desulfovibrionales 23 order 213115 2204 0 1 17 213116 206 0 3 family 3 genus Desulfomicrobium 0 206 898 4 1 132132 99 0 Desulfomicrobium orale species 1 1 species Desulfomicrobium baculatum 103 0 899 Desulfohalobiaceae family 2 1 1 213117 0 65 genus 1 0 64 45662 0 64 45663 1 species Desulfohalobium retbaense family 17 Desulfovibrionaceae 12 1 1916 0 194924 2582840 0 107 1 genus species 1 Desulfovibrio africanus 107 0 873 16 1 0 888 872 9 genus Desulfovibrio 0 20 1725232 species 1 Candidatus Desulfovibrio trichonymphae 901 68 0 Desulfovibrio piger 1 species 881 257 0 Desulfovibrio vulgaris 1 species 44742 63 0 Desulfovibrio fairfieldensis species 1 1 species Desulfovibrio magneticus 0 153 184917 1 no rank 2593640 51 0 51 0 631220 1 species Desulfovibrio sp. G11 0 105 58180 species 1 Desulfovibrio alaskensis Desulfovibrio desulfuricans species 1 876 0 155 0 278 2035811 3 genus 85 0 1716143 1 species Pseudodesulfovibrio indicus Pseudodesulfovibrio profundus species 1 57320 57 0 0 136 182210 species 1 Pseudodesulfovibrio aespoeensis 1 1 41707 458 0 Lawsonia 2 genus Lawsonia intracellularis species 1 29546 0 457 1 genus 2794998 173 0 1 species Desulfovibrio salexigens 173 0 880 453227 179 0 3 order 1 7 453228 0 179 Desulfarculaceae family 3 Desulfarculus genus 2 1 3 453229 172 0 Desulfarculus baarsii species 1 453230 0 169 877 class Gammaproteobacteria 0 207697 1236 295 1 135613 0 5649 1 61 Chromatiales 50 order 72276 0 1886 1 22 Ectothiorhodospiraceae 18 family Spiribacter 3 genus 1335745 0 299 1 11 112 0 1335746 1 species Spiribacter salinus 1335757 176 0 Spiribacter curvatus species 1 2 genus Halorhodospira 173 0 85108 1 1 0 172 1053 species 1 Halorhodospira halophila 133193 160 0 1 5 Alkalilimnicola 2 genus Alkalilimnicola ehrlichii 1 species 351052 0 155 Acidihalobacter genus 2 1 2 1765964 0 172 Acidihalobacter prosperus 1 species 160660 170 0 2 genus Ectothiorhodospira 0 174 1051 2 1 2684909 172 0 no rank 1 species 1 Ectothiorhodospira sp. BSL-9 0 172 1442136 1 28 106633 0 886 Thioalkalivibrio genus 6 2621013 0 151 1 no rank 1 species Thioalkalivibrio sp. K90mix 0 151 396595 Thioalkalivibrio paradoxus 1 species 108010 136 0 157 0 186931 1 species Thioalkalivibrio nitratireducens Thioalkalivibrio sulfidiphilus 1 species 1033854 234 0 0 180 106634 species 1 Thioalkalivibrio versutus 263 0 1676141 2 1 3 family Wenzhouxiangellaceae 0 261 1676142 9 1 2 genus Wenzhouxiangella species 1 Wenzhouxiangella marina 252 0 1579979 255526 262 0 1 3 Halothiobacillaceae 4 family 1 12 109262 0 259 Halothiobacillus genus 3 0 111 2636392 no rank 1 0 111 1860122 1 species Halothiobacillus sp. LS2 927 136 0 Halothiobacillus neapolitanus 1 species family 18 Chromatiaceae 0 2441 1046 14 1 genus 2 Allochromatium 189 0 85072 2 1 0 187 1049 1 species Allochromatium vinosum 4 1 316 0 1980513 genus 2 Candidatus Nitrosoglobus 0 312 1630141 species 1 Candidatus Nitrosoglobus terrae no rank 1 162 0 82569 0 162 1978339 1 species Chromatiaceae bacterium 2141T.STBD.0c.01a 2 genus Thiocystis 1 1 0 170 13724 0 169 73141 1 species Thiocystis violascens 514 0 53392 5 1 genus 2 Thiodictyon 1166950 0 509 Candidatus Thiodictyon syntrophicum 1 species 616 0 1227 8 1 4 genus Nitrosococcus 0 155 133539 1 species Nitrosococcus halophilus 0 177 1229 species 1 Nitrosococcus oceani 473531 276 0 Nitrosococcus watsonii 1 species 2 genus Thioflavicoccus 230 0 156885 3 1 80679 0 227 Thioflavicoccus mobilis species 1 2 genus Marichromatium 3 1 0 230 85076 1 species Marichromatium purpuratum 227 0 37487 1738654 201 0 1 family genus 1 1738655 0 201 1548547 0 201 Woeseia oceani species 1 5 1 0 345 449719 family 3 Granulosicoccaceae 437504 340 0 1 4 Granulosicoccus 2 genus 336 0 437505 species 1 Granulosicoccus antarcticus 190 0 451214 2 no rank 1 4 1273155 0 190 Thiohalobacter genus 2 186 0 585455 1 species Thiohalobacter thiocyanaticus 118969 0 7093 1 8 Legionellales 21 order 5 family Coxiellaceae 981 0 118968 16 1 1 13 776 585 0 Coxiella 3 genus 0 270 777 species 1 Coxiella burnetii 1 no rank 2676648 0 302 325775 302 0 Coxiella endosymbiont of Amblyomma americanum species 1 no rank 1 134284 380 0 Coxiella-like endosymbiont species 1 1592897 380 0 0 6104 444 11 1 15 family Legionellaceae 465 0 364 1 1 Tatlockia genus 2 species 1 Tatlockia micdadei 363 0 451 47 1 0 5729 445 12 genus Legionella Legionella spiritensis 1 species 452 151 0 0 301 45067 species 1 Legionella lansingensis 1867846 365 0 Legionella clemsonensis species 1 Legionella longbeachae species 1 450 0 501 421 0 66969 species 1 Legionella waltersii 449 388 0 Legionella hackeliae 1 species species 1 Legionella oakridgensis 0 276 29423 Legionella fallonii 1 species 96230 0 511 0 1619 446 species 1 Legionella pneumophila Legionella sainthelensi 1 species 28087 522 0 Legionella endosymbiont of Polyplax serrata 1 species 2005262 627 0 91347 40388 0 1 108 Enterobacterales 247 order family 28 Erwiniaceae 25 1 0 8574 1903409 2 genus Tatumella 2 1 0 107 82986 Tatumella citrea 1 species 53336 105 0 Buchnera 2 genus 32199 0 5017 1 7 Buchnera aphidicola 1 species 9 0 5010 2100764 0 185 genus 2 104 0 665913 1 species Pantoea calida species 1 Pantoea gaviniae 81 0 665914 551 687 0 1 14 Erwinia 8 genus 182337 0 128 Erwinia billingiae species 1 no rank 1 2622719 64 0 1 species Erwinia sp. Ejp617 0 64 215689 Erwinia amylovora species 1 552 0 92 1922217 174 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 species 1 species Erwinia pyrifoliae 0 75 79967 68 0 338565 1 species Erwinia tasmaniensis 1619313 0 72 Erwinia gerundensis 1 species 11 genus Pantoea 42 1 1504 0 53335 553 159 0 Pantoea ananatis 1 species 66269 92 0 Pantoea stewartii 1 species species group 1 157 0 1654067 species 1 Pantoea agglomerans 0 157 549 Candidatus Pantoea carbekii species 1 1235990 0 348 species 1 Pantoea rwandensis 93 0 1076550 1 species Pantoea vagans 204 0 470934 0 309 2630326 no rank 3 Pantoea sp. At-9b species 1 592316 107 0 0 100 1484158 species 1 Pantoea sp. PSNIH1 species 1 Pantoea sp. PSNIH2 102 0 1484157 0 100 1891675 1 species Pantoea alhagi genus 2 Wigglesworthia 1049 0 51228 16 1 species 1 Wigglesworthia glossinidia 0 1033 51229 no rank 2 451511 0 164 2 genus Plesiomonas 164 0 702 1 1 1 species Plesiomonas shigelloides 0 163 703 38 family Yersiniaceae 0 5536 1903411 16 1 genus 1 1745211 73 0 Chania multitudinisentens 1 species 1639108 73 0 genus 2 Gibbsiella 95 0 929812 2 1 93 0 929813 species 1 Gibbsiella quercinecans genus 16 Serratia 0 2382 613 60 1 614 0 119 Serratia liquefaciens species 1 8 no rank 0 817 2647522 104623 0 103 Serratia sp. ATCC 39006 1 species 2033438 0 82 Serratia sp. MYb239 species 1 Serratia sp. SCBI 1 species 488142 0 137 Serratia sp. FS14 species 1 1327989 0 136 Serratia sp. AS13 1 species 768493 0 72 species 1 Serratia sp. SSNIH1 114 0 1758196 Serratia sp. AS12 1 species 768490 0 72 0 101 671990 species 1 Serratia sp. FGI94 Serratia rubidaea 1 species 61652 0 92 615 0 703 Serratia marcescens 1 species Serratia proteamaculans species 1 28151 70 0 229 0 47917 species 1 Serratia fonticola Serratia ficaria species 1 61651 0 119 0 173 82996 species 1 Serratia plymuthica 4 genus Rahnella 0 260 34037 10 1 Rahnella aquatilis 1 species 34038 76 0 174 0 2635087 2 no rank 0 78 741091 1 species Rahnella sp. Y9602 species 1 Rouxiella sp. ERMR1:05 0 96 1805933 Yersinia 13 genus 1 40 629 2708 0 1 species Yersinia ruckeri 0 144 29486 2653513 0 82 no rank 1 1839800 0 82 Yersinia sp. FDAARGOS_228 1 species species 1 Yersinia rohdei 150 0 29485 263819 126 0 Yersinia aleksiciae species 1 125 0 29483 1 species Yersinia aldovae 28152 0 118 Yersinia kristensenii species 1 29484 355 0 Yersinia frederiksenii species 1 0 456 630 species 1 Yersinia enterocolitica 3 species group 0 1020 1649845 367190 0 350 Yersinia similis species 1 633 0 274 Yersinia pseudotuberculosis 1 species Yersinia pestis species 1 632 396 0 631 0 92 Yersinia intermedia species 1 Rouxiella 1 genus 1565532 2 0 family 14 Hafniaceae 0 2915 1903412 8 1 2 genus Obesumbacterium 2 1 0 94 82982 82983 0 92 Obesumbacterium proteus 1 species 1 25 635 0 2482 Edwardsiella 8 genus Edwardsiella piscicida species 1 1263550 0 94 Edwardsiella ictaluri species 1 67780 0 88 2 no rank 0 194 2676541 Edwardsiella sp. LADL05-105 1 species 1650654 99 0 1 species Edwardsiella sp. EA181011 95 0 1578828 1 species Edwardsiella tarda 1908 0 636 61 0 93378 1 species Edwardsiella hoshinae 1 species Edwardsiella anguillarum 0 112 1821960 Hafnia genus 3 568 331 0 1 7 Hafnia alvei species 1 569 0 234 1 no rank 0 90 2621980 species 1 Hafnia sp. CBA7124 90 0 1848580 Pectobacteriaceae 20 family 1903410 0 1960 1 6 Sodalis genus 5 84565 0 498 1 20 species 1 Sodalis praecaptivus 94 0 1239307 1486991 0 146 Candidatus Sodalis pierantonius species 1 94 0 63612 1 species Sodalis glossinidius Sodalis endosymbiont of Henestaris halophilus 1 species 1929246 144 0 3 1 0 95 71655 genus 2 Brenneria 0 92 1109412 1 species Brenneria goodwinii Dickeya 6 genus 1 13 204037 607 0 Dickeya fangzhongdai 1 species 1778540 93 0 1 species Dickeya zeae 180 0 204042 1089444 170 0 Dickeya solani species 1 0 66 204038 1 species Dickeya dadantii 204039 85 0 Dickeya dianthicola 1 species genus 6 Pectobacterium 0 754 122277 14 1 species 1 Pectobacterium parmentieri 165 0 1905730 Pectobacterium atrosepticum species 1 29471 80 0 Pectobacterium carotovorum 1 species 554 294 0 0 96 2042057 1 species Pectobacterium polaris Pectobacterium wasabiae 1 species 55208 0 105 2 family 1903416 0 143 0 143 82984 2 1 genus 2 Pragia 82985 141 0 Pragia fontium species 1 22 family Morganellaceae 3858 0 1903414 16 1 8 1 867 0 626 genus 6 Xenorhabdus 0 132 351671 1 species Xenorhabdus doucetiae 142 0 40577 species 1 Xenorhabdus poinarii Xenorhabdus bovienii species 1 40576 0 255 351679 0 174 Xenorhabdus hominickii species 1 628 0 156 Xenorhabdus nematophila 1 species Photorhabdus 4 genus 29487 687 0 1 3 1 species Photorhabdus asymbiotica 0 291 291112 29488 0 227 Photorhabdus luminescens 1 species 574560 0 166 Photorhabdus temperata 1 species 2 1 0 485 637 genus 2 Arsenophonus 1 species Arsenophonus symbiont of Lipoptena fortisetosa 483 0 634113 586 0 721 1 3 Providencia genus 4 126385 129 0 Providencia alcalifaciens species 1 268 0 587 1 species Providencia rettgeri 588 321 0 Providencia stuartii 1 species 3 genus Proteus 3 1 935 0 583 species 1 Proteus vulgaris 0 342 585 584 590 0 Proteus mirabilis 1 species 0 147 581 4 1 genus 2 Morganella Morganella morganii 1 species 582 0 143 17130 0 543 144 1 family 120 Enterobacteriaceae genus 1 401618 273 0 273 0 401619 species 1 Candidatus Riesia pediculicola Candidatus Ishikawaella genus 2 409304 0 392 1 1 1 species Candidatus Ishikawaella capsulata 391 0 168169 1 51 544 1409 0 Citrobacter 14 genus 67824 119 0 Citrobacter farmeri 1 species 171 0 35703 species 1 Citrobacter amalonaticus 0 72 67825 1 species Citrobacter rodentium 1 species Citrobacter koseri 0 90 545 no rank 2 2644389 132 0 species 1 Citrobacter sp. CFNIH10 83 0 1920110 1702170 49 0 Citrobacter sp. FDAARGOS_156 1 species 7 species group 1344959 774 0 Citrobacter freundii species 1 546 0 305 1 species Citrobacter freundii complex sp. CFNIH9 68 0 2077149 1 species Citrobacter freundii complex sp. CFNIH2 0 59 2066049 species 1 Citrobacter braakii 0 122 57706 0 55 2077148 species 1 Citrobacter freundii complex sp. CFNIH4 0 54 2077147 1 species Citrobacter freundii complex sp. CFNIH3 67827 0 111 Citrobacter werkmanii species 1 4 genus Shigella 6 1 140 0 620 622 0 70 Shigella dysenteriae species 1 1 species Shigella flexneri 33 0 623 1 no rank 2629414 0 31 0 31 1813821 1 species Shigella sp. PAMC 28760 genus 2 Cedecea 0 256 158483 2 1 Cedecea neteri 1 species 158822 254 0 1 1 590 1433 0 Salmonella 3 genus 0 123 54736 species 1 Salmonella bongori 0 1309 28901 1 species Salmonella enterica Cronobacter 8 genus 1 18 413496 658 0 Cronobacter sakazakii species 1 28141 0 153 1 species Cronobacter universalis 67 0 535744 413502 65 0 Cronobacter turicensis species 1 1 species Cronobacter dublinensis 103 0 413497 0 83 413503 1 species Cronobacter malonaticus 68 0 1163710 1 species Cronobacter condimenti 101 0 413501 1 species Cronobacter muytjensii no rank 20 3686 0 191675 20 clade 3686 0 84563 501 0 1682492 genus 1 1410383 501 0 Candidatus Tachikawaea gelatinosa 1 species genus 1 1906660 238 0 Candidatus Mikella endobia species 1 1778264 238 0 146507 0 509 4 clade 1 species secondary endosymbiont of Ctenarytaina eucalypti 0 86 1199245 3 1 0 229 568987 2 genus Candidatus Hamiltonella Candidatus Hamiltonella defensa 1 species 138072 0 226 species 1 secondary endosymbiont of Heteropsylla cubana 0 194 134287 1 1 1906661 180 0 Candidatus Gullanella 2 genus Candidatus Gullanella endobia species 1 1070130 0 179 Candidatus Doolittlea 2 genus 1 2 1906657 81 0 1778262 79 0 Candidatus Doolittlea endobia species 1 genus 2 Candidatus Hoaglandella 94 0 1906659 3 1 Candidatus Hoaglandella endobia 1 species 1778263 91 0 1 clade 211 0 199891 0 211 1835721 species 1 secondary endosymbiont of Trabutina mannipara 84564 1872 0 clade 7 Candidatus Blochmannia genus 7 203804 0 1872 1 16 711328 0 596 no rank 2 1 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 268 1505596 species 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 328 1505597 Candidatus Blochmannia pennsylvanicus 1 species 101534 0 237 Candidatus Blochmannia chromaiodes species 1 251542 259 0 203907 357 0 Candidatus Blochmannia floridanus species 1 251535 407 0 Candidatus Blochmannia vafer species 1 1330547 343 0 1 1 Kosakonia genus 5 81 0 1158459 species 1 Kosakonia sacchari 0 66 208223 1 species Kosakonia cowanii 115 0 283686 species 1 Kosakonia radicincitans species 1 Kosakonia oryzae 0 80 497725 58 0 1335483 1 genus 0 58 563 1 species Shimwellia blattae 1 44 570 2537 0 Klebsiella 10 genus 2608929 153 0 2 no rank 68 0 1934254 1 species Klebsiella sp. M5al 1905288 85 0 Klebsiella sp. LTGPAF-6F species 1 Klebsiella quasivariicola species 1 2026240 0 73 1 species Klebsiella michiganensis 0 191 1134687 481 0 548 1 species Klebsiella aerogenes 1463165 0 68 Klebsiella quasipneumoniae 1 species Klebsiella pneumoniae species 1 573 1019 0 571 363 0 Klebsiella oxytoca species 1 1 species Klebsiella variicola 145 0 244366 0 535 36866 5 no rank species 1 Enterobacteriaceae bacterium strain FGI 57 0 59 693444 1 species Enterobacteriaceae bacterium ENNIH3 0 74 1920128 Plautia stali symbiont 1 species 891974 0 270 0 67 2066051 1 species Enterobacteriaceae bacterium ENNIH1 0 65 1920109 species 1 Enterobacteriaceae bacterium ENNIH2 3 genus Raoultella 4 1 292 0 160674 0 224 54291 1 species Raoultella ornithinolytica 575 64 0 Raoultella planticola 1 species Leclercia genus 4 1 3 83654 237 0 83655 95 0 Leclercia adecarboxylata species 1 2627398 0 139 2 no rank Leclercia sp. LSNIH1 1 species 1920114 0 69 Leclercia sp. LSNIH3 species 1 1920116 0 70 1 1 1330545 268 0 Lelliottia genus 4 1 species Lelliottia jeotgali 62 0 1907578 Lelliottia nimipressuralis 1 species 69220 60 0 61646 145 0 Lelliottia amnigena 1 species Pluralibacter genus 3 1 1 1330546 0 214 0 86 1334193 species 1 [Enterobacter] lignolyticus 1 species Pluralibacter gergoviae 127 0 61647 genus 2 Candidatus Moranella 1 1 0 82 1048757 1048758 81 0 Candidatus Moranella endobia 1 species 90 1 0 2017 547 22 genus Enterobacter 0 1429 354276 12 species group 3 no rank 2757714 134 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 species 2077137 60 0 Enterobacter cloacae complex sp. ECNIH7 1 species 1915310 46 0 0 28 2027919 1 species Enterobacter cloacae complex bacterium species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 52 1812935 species 3 Enterobacter hormaechei 247 1 343 0 158836 subspecies 1 Enterobacter xiangfangensis 41 0 1296536 1812934 55 0 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1 550 0 578 Enterobacter cloacae species 1 208224 49 0 Enterobacter kobei 1 species 61 0 69218 species 1 Enterobacter cancerogenus Enterobacter ludwigii 1 species 299767 51 0 61645 161 0 Enterobacter asburiae 1 species 0 498 2608935 9 no rank 1977566 0 49 Enterobacter sp. Crenshaw species 1 0 32 1560339 1 species Enterobacter sp. E20 species 1 Enterobacter sp. FY-07 70 0 1692238 Enterobacter sp. CRENT-193 species 1 2051905 0 50 Enterobacter sp. R4-368 1 species 1166130 60 0 85 0 1914861 1 species Enterobacter sp. SA187 1 species Enterobacter sp. ODB01 47 0 1827481 Enterobacter sp. HK169 species 1 1868135 0 38 0 67 399742 species 1 Enterobacter sp. 638 0 68 579 1 genus Kluyvera intermedia 1 species 61648 0 68 5 genus Escherichia 0 2088 561 10 1 Escherichia albertii 1 species 208962 129 0 0 1844 562 1 species Escherichia coli Escherichia marmotae 1 species 1499973 0 62 1 species Escherichia fergusonii 43 0 564 135615 0 175 3 order 1 2 868 0 175 Cardiobacteriaceae 3 family genus 2 Dichelobacter 3 1 0 173 869 870 170 0 Dichelobacter nodosus species 1 1 8 135625 0 5877 Pasteurellales order 31 Pasteurellaceae 30 family 712 0 5869 1 25 genus 1 243 0 476528 species 1 Bibersteinia trehalosi 0 243 47735 2 genus Basfia 0 143 697331 2 1 [Mannheimia] succiniciproducens 1 species 157673 0 141 0 371 2094023 genus 1 738 0 371 Glaesserella parasuis 1 species genus 6 Haemophilus 11 1 0 1819 724 0 186 729 1 species Haemophilus parainfluenzae 0 380 730 1 species [Haemophilus] ducreyi 2609962 143 0 no rank 1 1 species Haemophilus sp. oral taxon 036 0 143 712310 727 0 941 Haemophilus influenzae species 1 Haemophilus pittmaniae species 1 249188 0 158 genus 2 Histophilus 0 333 214906 2 1 Histophilus somni species 1 731 0 331 1106 0 745 17 1 3 genus Pasteurella Pasteurella dagmatis 1 species 754 294 0 0 795 747 1 species Pasteurella multocida genus 4 Mannheimia 4 1 0 630 75984 2645054 160 0 no rank 1 0 160 1432056 1 species Mannheimia sp. USDA-ARS-USMARC-1261 species 1 Mannheimia varigena 280 0 85404 species 1 Mannheimia haemolytica 0 186 75985 1 7 713 628 0 Actinobacillus 5 genus 716 0 158 Actinobacillus suis 1 species 0 175 715 1 species Actinobacillus pleuropneumoniae 0 111 67854 species 1 Actinobacillus succinogenes species 1 Actinobacillus equuli 0 177 718 1 5 416916 371 0 Aggregatibacter 3 genus 714 0 192 Aggregatibacter actinomycetemcomitans species 1 174 0 732 species 1 Aggregatibacter aphrophilus Gallibacterium genus 2 1 1 155493 0 200 199 0 750 species 1 Gallibacterium anatis 2 1 214 0 1934945 order 3 Immundisolibacterales family 2 212 0 1934946 0 212 1934947 1 1 genus 2 Immundisolibacter 0 211 1810504 species 1 Immundisolibacter cernigliae no rank 2 329 0 33811 1 species gamma proteobacterium HdN1 0 191 83406 endosymbiont of unidentified scaly snail isolate Monju 1 species 1248727 0 138 72273 0 14020 1 6 Thiotrichales 34 order 1 3 135617 0 859 Thiotrichaceae 5 family 1021 0 466 1 2 Beggiatoa genus 2 464 0 288004 species 1 Beggiatoa leptomitoformis 2 1 390 0 40751 genus 2 Thioploca 388 0 40754 1 species Thioploca ingrica Piscirickettsiaceae 14 family 1 18 135616 3687 0 226 0 28884 1 genus Hydrogenovibrio crunogenus species 1 39765 0 226 Cycloclasticus genus 4 34067 0 2013 1 28 0 1433 2621467 no rank 2 385025 676 0 Cycloclasticus sp. P1 species 1 757 0 728003 species 1 Cycloclasticus sp. PY97N 552 0 1329899 species 1 Cycloclasticus zancles 1237 513 0 1 3 Piscirickettsia genus 2 Piscirickettsia salmonis 1 species 1238 510 0 genus 3 Thiomicrospira 0 366 933 3 1 147268 0 174 Thiomicrospira cyclica species 1 189 0 92245 species 1 Thiomicrospira aerophila Methylophaga genus 3 40222 551 0 1 7 754476 306 0 Methylophaga nitratireducenticrescens species 1 754477 238 0 Methylophaga frappieri species 1 Francisellaceae 14 family 34064 0 9468 1 17 1869285 0 519 1 genus 594679 519 0 Allofrancisella guangzhouensis species 1 98 1 0 8932 262 12 genus Francisella Francisella halioticida species 1 549298 0 1364 640 0 1542390 1 species Francisella sp. CA97-1460 263 1536 0 Francisella tularensis species 1 848 0 657445 species 1 Francisella noatunensis 573570 0 728 Francisella sp. TX077310 species 1 1 species Francisella persica 456 0 954 species 1 Francisella sp. TX077308 0 440 573569 28110 0 1243 Francisella philomiragia species 1 622488 527 0 Francisella hispaniensis 1 species 2 no rank 2610885 1052 0 1547445 0 619 Francisella sp. FSC1006 1 species Francisella sp. MA067296 species 1 475375 433 0 no rank 13 118884 4040 0 Candidatus Thioglobus 3 genus 1 15 655184 0 1329 Candidatus Thioglobus singularis species 1 1427364 903 0 1705394 411 0 Candidatus Thioglobus autotrophicus 1 species 4 clade 32036 0 1459 410330 0 572 Calyptogena okutanii thioautotrophic gill symbiont 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont species 1 113267 0 396 Candidatus Ruthia 2 genus 1541743 0 491 1 4 386487 487 0 Candidatus Ruthia magnifica species 1 genus 1 230 0 1524249 0 230 1249552 species 1 Pseudohongiella spirulinae 198346 613 0 1 clade 613 0 186490 species 1 Candidatus Baumannia cicadellinicola Sedimenticola 2 genus 1 10 349742 260 0 species 1 Sedimenticola thiotaurini 250 0 1543721 1608298 149 0 1 2 Thiolapillus genus 2 1 species Thiolapillus brandeum 147 0 1076588 1 72 72274 0 30568 Pseudomonadales order 128 family 42 Moraxellaceae 23 1 12342 0 468 54 1 2160 0 497 11 genus Psychrobacter Psychrobacter urativorans 1 species 45610 206 0 264 0 261164 1 species Psychrobacter alimentarius Psychrobacter arcticus 1 species 334543 170 0 1263 0 196806 no rank 6 0 218 1699622 species 1 Psychrobacter sp. P2G3 225 0 1699624 species 1 Psychrobacter sp. P11G5 1 species Psychrobacter sp. DAB_AL43B 0 181 1028416 1720344 193 0 Psychrobacter sp. AntiMn-1 1 species Psychrobacter sp. PRwf-1 1 species 349106 234 0 1 species Psychrobacter sp. G 0 212 571800 330922 203 0 Psychrobacter cryohalolentis 1 species genus 25 Acinetobacter 0 9111 469 115 1 201 0 108981 1 species Acinetobacter schindleri Acinetobacter indicus species 1 756892 0 129 species 1 202950 266 0 strain 1 Acinetobacter sp. ADP1 0 266 62977 0 395 106648 1 species Acinetobacter bereziniae 227 0 487316 species 1 Acinetobacter soli 271 0 1789224 species 1 Acinetobacter larvae 1 species Acinetobacter haemolyticus 0 339 29430 40216 0 212 Acinetobacter radioresistens 1 species species group 5 909768 0 3762 1785128 0 335 Acinetobacter lactucae species 1 species 1 Acinetobacter baumannii 0 1269 470 Acinetobacter calcoaceticus species 1 471 567 0 106654 0 397 Acinetobacter nosocomialis 1 species 1194 0 48296 1 species Acinetobacter pittii 233 0 40214 1 species Acinetobacter johnsonii 1148157 0 304 Acinetobacter oleivorans 1 species 196816 0 1717 no rank 7 1758189 310 0 Acinetobacter sp. ACNIH2 1 species Acinetobacter sp. TGL-Y2 species 1 1407071 0 251 Acinetobacter sp. SWBY1 1 species 2079596 0 233 Acinetobacter sp. NCu2D-2 species 1 1608473 215 0 1 species Acinetobacter sp. ACNIH1 0 238 1636603 0 290 1646498 species 1 Acinetobacter sp. TTH0-4 Acinetobacter sp. LoGeW2-3 1 species 1808001 180 0 1324350 546 0 Acinetobacter equi species 1 394 0 40215 1 species Acinetobacter junii Moraxella genus 5 1 6 475 0 1048 0 221 386891 species 1 Moraxella bovoculi 1 species Moraxella ovis 0 126 29433 Moraxella osloensis 1 species 34062 0 409 Moraxella catarrhalis species 1 480 0 286 85 family Pseudomonadaceae 124 1 0 18154 135621 351 526 0 subfamily 3 1 10 352 0 526 Azotobacter 3 genus species 1 Azotobacter vinelandii 229 0 354 Azotobacter chroococcum species 1 353 0 287 1 genus 1849530 210 0 1697053 0 210 Oblitimonas alkaliphila species 1 80 genus Pseudomonas 17294 0 286 588 1 219572 101 0 Pseudomonas antarctica 1 species Pseudomonas parafulva species 1 157782 0 250 112 0 312306 1 species Pseudomonas entomophila 157783 0 120 Pseudomonas cremoricolorata species 1 98 0 216142 1 species Pseudomonas rhizosphaerae 0 102 1788301 species 1 Pseudomonas versuta 6 species group 136841 0 2297 1 species Pseudomonas alcaligenes 158 0 43263 0 175 53412 1 species Pseudomonas resinovorans 0 204 1232139 1 species subgroup 1149133 204 0 Pseudomonas furukawaii species 1 Pseudomonas citronellolis species 1 53408 309 0 602 0 300 1 species Pseudomonas mendocina 0 849 287 1 species Pseudomonas aeruginosa species group 6 136845 2515 0 1 species Pseudomonas mosselii 274 0 78327 species 1 Pseudomonas putida 0 1366 303 1 species Pseudomonas plecoglossicida 0 137 70775 species 1 Pseudomonas monteilii 376 0 76759 0 219 47880 1 species Pseudomonas fulva Pseudomonas oryzihabitans species 1 47885 143 0 species 1 Pseudomonas koreensis 0 201 198620 136846 1192 0 2 species group 1 species Pseudomonas balearica 176 0 74829 1 species subgroup 1016 0 578833 0 1016 316 1 species Pseudomonas stutzeri Pseudomonas lurida 1 species 244566 96 0 2 species group 746 0 136842 Pseudomonas fragi 1 species 296 194 0 552 0 587753 species 1 Pseudomonas chlororaphis 101564 154 0 Pseudomonas alcaliphila species 1 0 114 1583341 1 species Pseudomonas cerasi 1 species Pseudomonas psychrotolerans 147 0 237610 0 91 237609 species 1 Pseudomonas alkylphenolica species group 8 136849 1633 0 2 species subgroup 251698 295 0 species 1 Pseudomonas savastanoi 137 0 29438 158 0 47877 1 species Pseudomonas amygdali 46257 0 82 Pseudomonas avellanae species 1 33069 95 0 Pseudomonas viridiflava species 1 251695 741 0 1 species subgroup Pseudomonas syringae 1 species 317 741 0 Pseudomonas syringae group genomosp. 3 1 species 251701 202 0 no rank 1 2775504 0 105 Pseudomonas sp. Lz4W species 1 1206777 0 105 Pseudomonas cichorii 1 species 36746 0 113 1 species Pseudomonas silesiensis 174 0 1853130 30 no rank 196821 0 3436 Pseudomonas sp. JY-Q 1 species 1338689 0 91 2083051 0 92 Pseudomonas sp. SWI6 species 1 Pseudomonas sp. MYb193 species 1 1827300 0 71 species 1 Pseudomonas sp. HLS-6 0 97 2049589 0 105 2083053 species 1 Pseudomonas sp. SWI44 140 0 1856685 1 species Pseudomonas sp. TCU-HL1 Pseudomonas sp. PONIH3 1 species 1636610 0 112 1 species Pseudomonas sp. TKP 156 0 1415630 species 1 Pseudomonas sp. St29 84 0 1500687 Pseudomonas sp. LPH1 1 species 1898684 158 0 0 97 1500686 species 1 Pseudomonas sp. Os17 1259844 0 97 Pseudomonas sp. FGI182 species 1 Pseudomonas sp. MRSN12121 species 1 1611770 0 134 1 species Pseudomonas sp. StFLB209 0 124 1028989 2018067 71 0 Pseudomonas sp. FDAARGOS_380 species 1 1 species Pseudomonas sp. URMO17WK12:I11 0 197 1283291 Pseudomonas sp. CC6-YY-74 1 species 1930532 0 205 Pseudomonas sp. M30-35 species 1 1981174 0 122 species 1 Pseudomonas sp. XWY-1 99 0 2069256 0 142 1931241 1 species Pseudomonas sp. S-6-2 2083052 100 0 Pseudomonas sp. SWI36 species 1 Pseudomonas sp. LH1G9 species 1 2083055 132 0 2083054 0 87 Pseudomonas sp. LG1D9 1 species 1 species Pseudomonas sp. NC02 0 97 2067572 Pseudomonas sp. DR 5-09 1 species 1534110 90 0 Pseudomonas sp. VLB120 species 1 69328 0 85 1 species Pseudomonas sp. GR 6-02 0 81 1659194 1 species Pseudomonas sp. UW4 0 109 1207075 1 species Pseudomonas sp. ATCC 13867 138 0 1294143 Pseudomonas sp. CCOS 191 1 species 1649877 0 123 Pseudomonas frederiksbergensis species 1 104087 245 0 species group 9 136843 2520 0 47878 251 0 Pseudomonas azotoformans 1 species 0 152 380021 species 1 Pseudomonas protegens 97 0 75612 1 species Pseudomonas mandelii 294 0 1510 Pseudomonas fluorescens species 1 1 species Pseudomonas corrugata 0 77 47879 species 1 Pseudomonas orientalis 103 0 76758 0 87 200451 1 species Pseudomonas poae Pseudomonas veronii species 1 76761 0 81 1 species Pseudomonas trivialis 162 0 200450 1 species Pseudomonas brassicacearum 204 0 930166 65741 0 158 Pseudomonas knackmussii 1 species 1240482 989 0 5 order 1240483 0 989 1 3 Orbaceae 5 family 1 1 530 0 1193503 2 genus Gilliamella 0 529 1196095 1 species Gilliamella apicola 1 3 1335631 456 0 Frischella 2 genus species 1 Frischella perrara 453 0 1267021 27 order Aeromonadales 3071 0 135624 15 1 1 31 84642 3056 0 Aeromonadaceae 26 family 2 genus Zobellella 0 180 347533 5 1 Zobellella denitrificans 1 species 347534 175 0 Oceanisphaera genus 3 225143 0 325 1 4 159 0 1903694 1 species Oceanisphaera sp. AMac2203 1 species Oceanisphaera profunda 0 162 1416627 0 138 129577 1 genus 2636315 0 138 no rank 1 0 138 511062 species 1 Oceanimonas sp. GK1 genus 1 0 107 43947 Tolumonas auensis 1 species 43948 0 107 0 2275 642 127 1 18 genus Aeromonas 651 68 0 Aeromonas media species 1 648 51 0 Aeromonas caviae 1 species 0 204 654 species 1 Aeromonas veronii 948519 91 0 Aeromonas rivipollensis 1 species species 1 Aeromonas dhakensis 94 0 196024 118 0 652 1 species Aeromonas schubertii 1 species Aeromonas hydrophila 500 0 644 645 0 272 Aeromonas salmonicida species 1 no rank 8 257493 0 671 species 1 Aeromonas sp. ASNIH4 108 0 1636609 Aeromonas sp. ASNIH3 1 species 1636608 0 53 108 0 2033032 1 species Aeromonas sp. CA23 species 1 Aeromonas sp. ASNIH1 122 0 1636606 1 species Aeromonas sp. ASNIH5 0 81 1758179 54 0 1920107 species 1 Aeromonas sp. ASNIH7 93 0 2033033 1 species Aeromonas sp. CU5 Aeromonas sp. ASNIH2 species 1 1636607 52 0 558964 0 79 Aeromonas aquatica 1 species Xanthomonadales 54 order 135614 0 9741 1 49 39 family Xanthomonadaceae 8439 0 32033 88 1 Stenotrophomonas genus 9 40323 0 2115 1 50 157 0 83617 1 species Stenotrophomonas nitritireducens 4 no rank 591 0 196198 species 1 Stenotrophomonas sp. MYb57 216 0 1827305 0 140 1793721 1 species Stenotrophomonas sp. KCTC 12332 138 0 2005046 species 1 Stenotrophomonas sp. WZN-1 0 97 1904944 1 species Stenotrophomonas sp. LM091 933 0 995085 1 species group 40324 0 933 Stenotrophomonas maltophilia species 1 128780 0 277 Stenotrophomonas acidaminiphila 1 species 216778 0 107 Stenotrophomonas rhizophila species 1 9 1 0 409 83618 3 genus Pseudoxanthomonas Pseudoxanthomonas spadix 1 species 415229 0 105 314722 0 295 Pseudoxanthomonas suwonensis 1 species 0 490 2370 2 1 genus 2 Xylella 2371 0 488 Xylella fastidiosa 1 species 133 0 83614 2 1 genus 2 Luteimonas 2006110 131 0 Luteimonas sp. 100111 1 species Lysobacter 5 genus 1 12 68 0 1295 262324 0 257 Lysobacter gummosus 1 species 0 421 84531 1 species Lysobacter antibioticus Lysobacter capsici 1 species 435897 0 374 231 0 69 species 1 Lysobacter enzymogenes 1 140 338 0 3909 Xanthomonas 17 genus Xanthomonas vasicola species 1 56459 0 85 species 1 Xanthomonas vesicatoria 0 170 56460 Xanthomonas hortorum 1 species 56454 0 140 836 0 643453 species group 2 Xanthomonas citri 1 species 346 0 658 Xanthomonas fuscans species 1 366648 178 0 0 83 456327 species 1 Xanthomonas euvesicatoria Xanthomonas alfalfae 1 species 366650 0 63 0 93 442694 1 species Xanthomonas perforans Xanthomonas phaseoli 1 species 1985254 91 0 Xanthomonas axonopodis species 1 53413 0 99 339 0 621 Xanthomonas campestris species 1 0 675 347 1 species Xanthomonas oryzae 226 0 48664 species 1 Xanthomonas fragariae Xanthomonas sacchari 1 species 56458 0 160 0 118 29447 species 1 Xanthomonas albilineans 1 species Xanthomonas translucens 309 0 343 1253 0 1775411 20 1 family 14 Rhodanobacteraceae 231454 447 0 1 13 Dyella genus 4 231455 126 0 Dyella japonica 1 species 1379159 165 0 Dyella jiangningensis species 1 445710 0 143 Dyella thiooxydans 1 species 323413 199 0 1 9 Dokdonella genus 2 species 1 Dokdonella koreensis 190 0 323415 242605 149 0 1 1 Luteibacter 2 genus 148 0 242606 1 species Luteibacter rhizovicinus 2 1 0 116 70411 2 genus Frateuria 114 0 81475 species 1 Frateuria aurantia 1 genus 128 0 2233801 1 species Xanthomonadales bacterium D13 0 128 2021234 1 3 75309 194 0 Rhodanobacter 2 genus 666685 0 191 Rhodanobacter denitrificans 1 species 4 1 0 1308 135618 order 11 Methylococcales 1 10 403 1304 0 Methylococcaceae family 10 1 genus 0 95 413 414 95 0 Methylococcus capsulatus species 1 0 148 762296 2 1 2 genus Methylovulum 1704499 0 146 Methylovulum psychrotolerans species 1 genus 1 39773 252 0 species 1 Methylomicrobium alcaliphilum 252 0 271065 genus 5 Methylomonas 799 0 416 20 1 421 0 186 Methylomonas methanica species 1 Methylomonas koyamae 1 species 702114 169 0 1 no rank 0 179 2608980 0 179 1727196 species 1 Methylomonas sp. DH-1 245 0 1538553 1 species Methylomonas denitrificans Vibrionales order 43 135623 41852 0 1 8 Vibrionaceae 42 family 1 60 641 41844 0 0 2688 657 4 1 4 genus Photobacterium 1295392 0 129 Photobacterium gaetbulicola species 1 1 species Photobacterium damselae 2212 0 38293 74109 343 0 Photobacterium profundum species 1 1 genus 168 0 246861 Grimontia hollisae species 1 673 0 168 1 1 1106 0 2042066 genus 2 Paraphotobacterium 1 species Paraphotobacterium marinum 0 1105 1755811 Aliivibrio 4 genus 511678 1194 0 1 8 40269 0 281 Aliivibrio salmonicida species 1 0 442 80852 1 species Aliivibrio wodanis 668 463 0 Aliivibrio fischeri species 1 Vibrio 30 genus 662 36628 0 1 220 1 species Vibrio scophthalmi 231 0 45658 Vibrio hyugaensis 1 species 1534743 0 379 2 no rank 2614977 296 0 species 1 Vibrio sp. 2521-89 113 0 2014742 0 183 1116375 species 1 Vibrio sp. EJY3 52443 0 276 Vibrio tapetis 1 species species 1 Vibrio furnissii 169 0 29494 1 species Vibrio tritonius 0 191 1435069 Vibrio cholerae 1 species 666 346 0 10 species group 15471 0 717610 691 355 0 Vibrio natriegens species 1 0 559 2315253 2 species subgroup 50719 381 0 Vibrio diabolicus species 1 Vibrio antiquarius species 1 150340 178 0 Vibrio owensii species 1 696485 0 802 Vibrio rotiferianus species 1 190895 372 0 1 species Vibrio harveyi 854 0 669 0 10670 680 1 species Vibrio campbellii 0 360 766224 species 1 Vibrio jasicida 725 0 670 1 species Vibrio parahaemolyticus Vibrio alginolyticus species 1 663 0 774 0 227 674 species 1 Vibrio mimicus 163 0 2025808 species 1 Vibrio qinghaiensis 0 254 212663 species 1 Vibrio tasmaniensis Vibrio vulnificus species 1 672 752 0 1 species Vibrio coralliilyticus 0 15855 190893 28173 0 533 Vibrio nigripulchritudo species 1 188 0 553239 1 species Vibrio breoganii 0 186 676 species 1 Vibrio fluvialis species group 1 1891919 0 349 Vibrio tubiashii species 1 29498 0 349 687 220 0 Vibrio gazogenes 1 species 55601 0 322 Vibrio anguillarum 1 species 51 1 0 10211 135619 67 order Oceanospirillales 9 family Alcanivoracaceae 7 1 1817 0 224372 genus 6 Alcanivorax 30 1 0 1590 59753 1306787 223 0 Alcanivorax pacificus 1 species 0 208 1094342 1 species Alcanivorax xenomutans 439 0 2638842 no rank 1 species 1 Alcanivorax sp. NBRC 101098 439 0 1113728 Alcanivorax dieselolei 1 species 285091 224 0 Alcanivorax borkumensis 1 species 59754 466 0 genus 2 Ketobacter 1 1 0 220 2025617 1 species Ketobacter alkanivorans 219 0 1917421 family 12 Oceanospirillaceae 2155 0 135620 11 1 genus 2 Marinobacterium 0 279 48075 5 1 1 species Marinobacterium aestuarii 0 274 1821621 Bacterioplanes genus 2 1537406 0 234 1 7 Bacterioplanes sanyensis species 1 1249553 227 0 1 genus 188907 305 0 Oleispira antarctica species 1 188908 305 0 4 genus Marinomonas 947 0 28253 6 1 Marinomonas mediterranea species 1 119864 0 267 0 453 196814 no rank 1 400668 453 0 Marinomonas sp. MWYL1 1 species 0 221 936476 species 1 Marinomonas posidonica 187492 0 379 1 4 Thalassolituus 2 genus Thalassolituus oleivorans species 1 187493 0 375 4 family Saccharospirillaceae 9 1 567 0 255527 227 0 230494 genus 1 1336806 227 0 Reinekea forsetii 1 species 331 0 1445504 2 1 2 genus Gynuella Gynuella sunshinyii 1 species 1445505 329 0 5 1 0 933 1920240 family 6 Kangiellaceae Kangiella genus 5 261963 0 928 1 18 Kangiella koreensis 1 species 261964 236 0 Kangiella geojedonensis 1 species 914150 189 0 0 235 1561924 1 species Kangiella profundi 1144748 250 0 Kangiella sediminilitoris 1 species family 30 Halomonadaceae 36 1 4154 0 28256 no rank 4 114403 801 0 4 1 0 321 235572 2 genus Candidatus Portiera 0 317 91844 species 1 Candidatus Portiera aleyrodidarum 114185 154 0 genus 1 Candidatus Carsonella ruddii 1 species 114186 154 0 genus 1 1495768 0 326 1495769 0 326 Candidatus Evansia muelleri 1 species genus 1 0 192 204286 28258 192 0 Cobetia marina species 1 2 genus Salinicola 0 174 404432 3 1 1771309 171 0 Salinicola tamaricis species 1 genus 3 Kushneria 1 1 0 289 504090 1 species Kushneria konosiri 0 144 698828 Kushneria marisflavi species 1 157779 144 0 59 1 0 2274 2745 genus 15 Halomonas 159 0 1178482 species 1 Halomonas huangheensis 8 no rank 2609666 0 1165 0 182 2136172 1 species Halomonas sp. SF2003 0 108 1949203 species 1 Halomonas sp. 'Soap Lake #6' species 1 Halomonas sp. 'Soap Lake #7' 0 108 1962264 Halomonas sp. GT species 1 1971364 0 177 1883416 172 0 Halomonas sp. 1513 species 1 126 0 1118153 species 1 Halomonas sp. GFAJ-1 Halomonas sp. KO116 species 1 1504981 0 145 1610576 0 147 Halomonas sp. R57-5 1 species 213554 0 143 Halomonas campaniensis species 1 475662 0 249 Halomonas beimenensis species 1 Halomonas aestuarii species 1 1897729 226 0 species 1 Halomonas chromatireducens 0 150 507626 Halomonas hydrothermalis 1 species 115561 123 0 2 genus Halotalea 0 190 376488 1 1 376489 189 0 Halotalea alkalilenta 1 species 42054 0 198 1 3 Chromohalobacter genus 2 1 species Chromohalobacter salexigens 0 195 158080 191033 246 0 1 7 Oleiphilaceae family 2 1 genus 141450 0 239 Oleiphilus messinensis 1 species 141451 239 0 Hahellaceae family 3 1 3 224379 288 0 4 1 0 285 158481 2 genus Hahella 1 species Hahella chejuensis 0 281 158327 order 27 Cellvibrionales 6 1 0 4701 1706369 4 family Halieaceae 3 1 0 842 1706372 3 genus Halioglobus 0 839 1217416 9 1 Halioglobus japonicus 1 species 930805 0 402 species 1 Halioglobus pacificus 428 0 930806 1706373 884 0 1 2 Microbulbiferaceae 5 family Microbulbifer 4 genus 48073 0 882 1 11 252514 292 0 Microbulbifer thermotolerans species 1 Microbulbifer aggregans 1 species 1769779 0 278 1 species Microbulbifer agarilyticus 301 0 260552 6 family Spongiibacteraceae 0 1013 1706375 14 1 genus 1 1084558 412 0 0 412 716816 species 1 Oceanicoccus sagamiensis genus 2 Spongiibacter 2 1 281 0 630749 1 no rank 2631504 279 0 Spongiibacter sp. IMCC21906 1 species 1620392 0 279 306 0 1434050 4 1 2 genus Zhongshania 302 0 1470434 1 species Zhongshania aliphaticivorans 12 1 1956 0 1706371 11 family Cellvibrionaceae 10 1 0 681 10 4 genus Cellvibrio Cellvibrio japonicus species 1 155077 0 197 2 no rank 2624793 0 474 217 0 1945512 species 1 Cellvibrio sp. PSBB023 Cellvibrio sp. PSBB006 species 1 1987723 257 0 1 genus 472 0 2036021 Agarilytica rhodophyticola species 1 1737490 0 472 4 1 246 0 2425 genus 2 Teredinibacter 2426 0 242 Teredinibacter turnerae species 1 genus 2 Saccharophagus 337 0 316625 5 1 Saccharophagus degradans species 1 86304 0 332 1 genus 447467 0 208 1 species Simiduia agarivorans 208 0 447471 6 1 151 0 1775403 order 4 Nevskiales 2689614 144 0 family 2 genus 2 Steroidobacter 14 1 144 0 469322 465721 130 0 Steroidobacter denitrificans 1 species family 1 Sinobacteraceae 1 0 568386 Alteromonadales order 100 1 63 135622 0 26555 267893 503 0 5 family Idiomarina 5 genus 135575 503 0 1 6 species 1 Idiomarina loihiensis 155 0 135577 0 223 2614829 2 no rank 96 0 2100422 1 species Idiomarina sp. OT37-5b Idiomarina sp. X4 1 species 2055892 0 127 1 species Idiomarina piscisalsi 0 119 1096243 72275 0 8104 1 17 Alteromonadaceae 28 family 10 genus Alteromonas 27 1 0 5148 226 no rank 3 776 0 2614992 species 1 Alteromonas sp. Mac1 0 296 1777491 Alteromonas sp. MB-3u-76 species 1 2058133 239 0 1917158 241 0 Alteromonas sp. RW2A1 species 1 0 555 589873 species 1 Alteromonas australica species 1 Alteromonas naphthalenivorans 0 849 715451 0 605 314275 1 species Alteromonas mediterranea species 1 Alteromonas addita 0 304 287094 Alteromonas stellipolaris 1 species 233316 397 0 1635 0 28108 1 species Alteromonas macleodii 261825 226 0 1 genus 1 species Agarivorans gilvus 226 0 680279 61 1 1516 0 2742 genus 10 Marinobacter species 1 Marinobacter psychrophilus 143 0 330734 1 species Marinobacter salarius 0 180 1420917 1420916 0 175 Marinobacter similis species 1 0 148 1033846 1 species Marinobacter adhaerens 1874317 0 118 Marinobacter salinus species 1 0 482 83889 no rank 3 species 1 Marinobacter sp. CP1 0 192 1671721 490759 0 148 Marinobacter sp. BSs20148 1 species 1 species Marinobacter sp. LQ44 0 142 1749259 1 species Marinobacter hydrocarbonoclasticus 209 0 2743 genus 1 1751872 195 0 Lacimicrobium alkaliphilum 1 species 1526571 0 195 552 0 89404 3 1 3 genus Glaciecola no rank 1 0 244 2618684 0 244 983545 1 species Glaciecola sp. 4H-3-7+YE-5 305 0 300231 1 species Glaciecola nitratireducens 1 1 1621534 450 0 Paraglaciecola 2 genus 0 449 326544 species 1 Paraglaciecola psychrophila 474 0 267891 3 1 2 family Moritellaceae 1 genus 0 471 58050 471 0 80854 1 species Moritella viscosa 267894 0 781 1 6 Psychromonadaceae 4 family genus 3 Psychromonas 775 0 67572 4 1 2614957 336 0 no rank 1 314282 0 336 Psychromonas sp. CNPT3 1 species 0 435 357794 species 1 Psychromonas ingrahamii 4 1 0 3061 267889 family 9 Colwelliaceae 1 20 28228 2622 0 Colwellia genus 6 Colwellia psychrerythraea species 1 28229 542 0 1 species Colwellia beringensis 0 539 1967665 196834 1521 0 3 no rank species 1 Colwellia sp. MT41 424 0 58049 Colwellia sp. PAMC 21821 species 1 1816219 567 0 530 0 1816218 species 1 Colwellia sp. PAMC 20917 Thalassotalea 2 genus 1518149 0 435 1 2 1763536 0 433 Thalassotalea crassostreae species 1 267892 0 133 1 family 1 genus 44011 0 133 44012 0 133 Ferrimonas balearica 1 species Shewanellaceae 25 family 1 17 267890 0 5072 58 1 0 5055 22 genus 24 Shewanella 0 97 2018305 species 1 Shewanella bicestrii 197 0 70864 1 species Shewanella pealeana 70863 141 0 Shewanella oneidensis 1 species 271097 0 223 Shewanella sediminis 1 species Shewanella frigidimarina species 1 56812 304 0 Shewanella denitrificans 1 species 192073 224 0 species 1 Shewanella psychrophila 0 347 225848 species 1 Shewanella amazonensis 0 109 60478 200 0 24 species 1 Shewanella putrefaciens 281 0 60217 1 species Shewanella violacea 0 461 62322 species 1 Shewanella baltica species 1 Shewanella halifaxensis 465 0 271098 0 104 359303 species 1 Shewanella loihica no rank 6 0 916 196818 94122 145 0 Shewanella sp. ANA-3 1 species 351745 200 0 Shewanella sp. W3-18-1 species 1 2029986 154 0 Shewanella sp. WE21 1 species Shewanella sp. MR-7 species 1 60481 0 125 1 species Shewanella sp. Pdp11 175 0 2059264 species 1 Shewanella sp. MR-4 0 117 60480 Shewanella japonica 1 species 93973 332 0 214 0 404011 1 species Shewanella piezotolerans 260364 0 99 Shewanella marisflavi 1 species 60961 0 283 Shewanella woodyi 1 species 25 family Pseudoalteromonadaceae 8364 0 267888 16 1 genus 24 Pseudoalteromonas 8348 0 53246 172 1 0 201 43662 species 1 Pseudoalteromonas piscicida 163 0 43658 1 species Pseudoalteromonas rubra Pseudoalteromonas nigrifaciens species 1 28109 0 285 1 species Pseudoalteromonas translucida 0 262 166935 species 1 Pseudoalteromonas espejiana 271 0 28107 152297 0 291 Pseudoalteromonas issachenkonii species 1 0 391 314281 1 species Pseudoalteromonas tunicata 161398 0 397 Pseudoalteromonas phenolica 1 species 43659 0 278 Pseudoalteromonas tetraodonis 1 species 0 273 228 1 species Pseudoalteromonas haloplanktis Pseudoalteromonas aliena species 1 247523 0 359 Pseudoalteromonas piratica 1 species 1348114 0 348 1 species Pseudoalteromonas luteoviolacea 325 0 43657 272 0 176102 species 1 Pseudoalteromonas agarivorans species 1 Pseudoalteromonas atlantica 0 496 288 5 no rank 194690 0 1821 1761891 296 0 Pseudoalteromonas sp. 13-15 1 species 283699 366 0 Pseudoalteromonas sp. Bsw20308 1 species 234831 288 0 Pseudoalteromonas sp. SM9913 species 1 Pseudoalteromonas sp. NC201 1 species 1514074 494 0 1720343 0 377 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 species 233 0 267375 species 1 Pseudoalteromonas marina 394751 0 356 Pseudoalteromonas arctica species 1 1154 0 298657 1 species Pseudoalteromonas spongiae Acidiferrobacterales order 6 1 5 1692040 0 470 Acidiferrobacteraceae 5 family 1692041 0 465 1 5 4 1 0 183 1744881 genus 2 Sulfuricaulis 1 species Sulfuricaulis limicola 179 0 1620215 1692042 277 0 1 2 Sulfurifustis genus 2 Sulfurifustis variabilis species 1 1675686 275 0 5 class 580370 0 258 Mariprofundales order 5 580371 258 0 1 4 0 254 580372 1 1 family 4 Mariprofundaceae 253 0 377315 5 1 genus 3 Mariprofundus 1921086 112 0 Mariprofundus aestuarium 1 species species 1 Mariprofundus ferrinatatus 136 0 1921087 5 1 0 1546 1553900 class 11 Oligoflexia Bacteriovoracales order 5 1 2 2024979 0 822 family 3 Bacteriovoracaceae 0 263 263369 1 1 0 262 146784 2 1 genus 2 Bacteriovorax species 1 Bacteriovorax stolpii 260 0 960 1 family 0 557 1652132 1 genus 1652133 557 0 species 1 Halobacteriovorax marinus 0 557 97084 order 5 Bdellovibrionales 7 1 0 719 213481 712 0 213483 2 1 4 family Bdellovibrionaceae 1 3 958 710 0 Bdellovibrio 3 genus 0 220 453816 species 1 Bdellovibrio exovorus Bdellovibrio bacteriovorus 1 species 959 0 487 28216 52946 0 1 66 Betaproteobacteria class 336 32003 0 3672 1 20 Nitrosomonadales 39 order 1 15 2008793 272 0 Sterolibacteriaceae 5 family 2 genus Sulfuritalea 0 149 1054211 4 1 Sulfuritalea hydrogenivorans species 1 748811 145 0 0 108 378210 2 1 genus 2 Methyloversatilis 1 no rank 2639971 106 0 1842540 106 0 Methyloversatilis sp. RAC08 1 species 1 17 32011 0 1384 Methylophilaceae 11 family 3 1 0 155 81682 3 genus Methylovorus 80 0 266009 species 1 Methylovorus glucosotrophus 1 no rank 2634027 0 72 1 species Methylovorus sp. MP688 72 0 887061 0 104 404 genus 1 Methylobacillus flagellatus 1 species 405 0 104 1 genus 16 97 0 no rank 1 2630143 0 97 0 97 1662285 1 species Methylophilus sp. TWE2 0 399 359407 2 genus 1055487 0 253 Methylotenera versatilis species 1 Methylotenera mobilis species 1 359408 0 146 1 1 0 612 1679002 3 genus Candidatus Methylopumilus 157 0 1581680 species 1 Candidatus Methylopumilus turicensis species 1 Candidatus Methylopumilus planktonicus 0 454 1581557 4 family 2772226 0 169 Sulfuricella 2 genus 935200 96 0 1 3 93 0 649841 1 species Sulfuricella denitrificans Sulfuriferula genus 2 1778653 0 73 1 3 no rank 1 70 0 2637784 species 1 Sulfuriferula sp. AH1 0 70 1985873 3 family Gallionellaceae 171 0 90627 2 1 314343 0 97 genus 1 species 1 Sideroxydans lithotrophicus 0 97 63745 96 72 0 1 genus Gallionella capsiferriformans 1 species 370405 0 72 family 3 Thiobacillaceae 7 1 149 0 2008790 2 genus Thiobacillus 0 142 919 6 1 Thiobacillus denitrificans 1 species 36861 136 0 1 10 206379 1507 0 Nitrosomonadaceae family 12 12 1 1289 0 914 7 genus Nitrosomonas no rank 2 480 0 2609265 Nitrosomonas sp. AL212 species 1 153948 0 228 0 252 261292 species 1 Nitrosomonas sp. Is79A3 915 0 108 Nitrosomonas europaea species 1 species 1 Nitrosomonas communis 0 256 44574 species 1 Nitrosomonas eutropha 215 0 916 0 218 44577 species 1 Nitrosomonas ureae Nitrosospira genus 4 35798 0 208 1 3 1231 48 0 Nitrosospira multiformis species 1 Nitrosospira lacus species 1 1288494 87 0 35799 70 0 Nitrosospira briensis species 1 no rank 12 0 3190 119066 Kinetoplastibacterium 6 genus 1 20 33055 0 2389 0 434 233181 species 1 Kinetoplastibacterium blastocrithidii 994696 413 0 Candidatus Kinetoplastibacterium oncopeltii 1 species species 1 Candidatus Kinetoplastibacterium desouzaii 610 0 994692 345 0 994695 1 species Candidatus Kinetoplastibacterium galatii species 1 Candidatus Kinetoplastibacterium crithidii 0 567 33056 0 48 189384 1 genus 189385 48 0 Candidatus Tremblaya princeps species 1 1 1 481 0 1381133 2 genus Candidatus Profftella 1 species Candidatus Profftella armatura 480 0 669502 1301080 86 0 1 genus 0 86 1160784 1 species Candidatus Nasuia deltocephalinicola 327159 186 0 1 3 Candidatus Accumulibacter 2 genus 327160 0 183 Candidatus Accumulibacter phosphatis species 1 Burkholderiales order 228 80840 0 40116 1 352 Oxalobacteraceae family 29 1 23 75682 3685 0 1 12 202907 0 600 Collimonas 4 genus Collimonas fungivorans species 1 158899 0 196 0 141 279113 1 species Collimonas pratensis 279058 251 0 Collimonas arenae species 1 Massilia genus 6 149698 0 1002 1 33 2609279 382 0 no rank 2 1678028 173 0 Massilia sp. NR 4-1 species 1 species 1 Massilia sp. WG5 0 209 1707785 197 0 2072590 1 species Massilia sp. ZMN-3 175 0 2045208 species 1 Massilia sp. B2 215 0 1141883 1 species Massilia putida 76 0 846 2 1 2 genus Oxalobacter 847 0 74 Oxalobacter formigenes species 1 6 genus Herbaspirillum 17 1 925 0 963 341045 0 239 Herbaspirillum hiltneri species 1 130 0 80842 species 1 Herbaspirillum rubrisubalbicans no rank 1 2624150 151 0 Herbaspirillum sp. meg3 species 1 2025949 151 0 1 species Herbaspirillum seropedicae 0 216 964 92645 172 0 Herbaspirillum frisingense species 1 1 12 29580 0 866 Janthinobacterium 7 genus Janthinobacterium svalbardensis species 1 368607 172 0 55508 137 0 Janthinobacterium agaricidamnosum species 1 545 0 2610881 4 no rank 1644131 0 178 Janthinobacterium sp. 1_2014MBL_MicDiv species 1 Janthinobacterium sp. Marseille 1 species 375286 87 0 0 138 1236179 species 1 Janthinobacterium sp. B9-8 1938606 142 0 Janthinobacterium sp. LM6 species 1 genus 3 Herminiimonas 2 1 193 0 303379 Herminiimonas arsenitoxidans 1 species 1809410 0 90 204773 101 0 Herminiimonas arsenicoxydans 1 species 16 no rank 224471 1942 0 1 8 88 223 0 Leptothrix genus 2 34029 0 215 Leptothrix cholodnii 1 species 2 genus Rubrivivax 0 269 28067 11 1 28068 0 258 Rubrivivax gelatinosus species 1 2 1 223 0 93681 2 genus Roseateles 76731 221 0 Roseateles depolymerans species 1 138 0 318147 1 genus 138 0 2642959 no rank 1 1768242 0 138 Paucibacter sp. KCTC 42545 1 species 2 genus Rhizobacter 200 0 212743 2 1 946333 198 0 Rhizobacter gummiphilus 1 species 1 6 32012 0 194 Thiomonas genus 2 926 0 188 Thiomonas intermedia 1 species 316612 205 0 1 10 Methylibium genus 2 195 0 105560 species 1 Methylibium petroleiphilum 1 12 65047 247 0 Mitsuaria 2 genus 1 no rank 0 235 2648776 0 235 1658665 1 species Mitsuaria sp. 7 413882 243 0 [Polyangium] brachysporum 1 species 506 0 6467 1 34 Alcaligenaceae family 41 77 1 2647 0 517 17 genus Bordetella species 1 Bordetella genomosp. 6 0 232 463024 Bordetella genomosp. 8 species 1 1416806 170 0 1 species Bordetella petrii 133 0 94624 178 0 103855 1 species Bordetella hinzii 0 83 35814 species 1 Bordetella holmesii 0 119 1416803 1 species Bordetella genomosp. 9 1 species Bordetella trematum 0 130 123899 1 species Bordetella avium 77 0 521 463025 0 169 Bordetella bronchialis 1 species 0 139 2630031 no rank 1 Bordetella sp. H567 1 species 1697043 139 0 0 136 1331258 species 1 Bordetella pseudohinzii 0 134 463014 species 1 Bordetella flabilis 1 species Bordetella bronchiseptica 0 349 518 1 species Bordetella pertussis 180 0 520 0 167 463040 1 species Bordetella genomosp. 13 Bordetella parapertussis species 1 519 174 0 1921582 0 116 genus 1 1851544 0 116 Orrella dioscoreae 1 species 90243 0 143 genus 1 0 143 90245 1 species Oligella urethralis Pusillimonas genus 2 305976 0 115 1 4 no rank 1 0 111 2640016 1 species Pusillimonas sp. T7-7 0 111 1007105 Alcaligenes genus 2 507 0 369 1 1 Alcaligenes faecalis species 1 511 368 0 2 1 178 0 1100891 2 genus Paenalcaligenes 643674 0 176 Paenalcaligenes hominis 1 species genus 2 Castellaniella 1 1 0 137 359336 Castellaniella defragrans 1 species 75697 136 0 29574 693 0 genus 2 1 species Taylorella equigenitalis 0 379 29575 0 314 84590 1 species Taylorella asinigenitalis 2 genus Basilea 2 1 0 184 1472344 Basilea psittacipulmonis species 1 1472345 182 0 1 33 222 0 1625 Achromobacter 6 genus 32002 322 0 Achromobacter denitrificans 1 species 1 no rank 2626865 195 0 1758194 0 195 Achromobacter sp. AONIH1 species 1 1 species Achromobacter spanius 272 0 217203 0 181 217204 1 species Achromobacter insolitus 0 622 85698 species 1 Achromobacter xylosoxidans 1 2 290425 226 0 Advenella 3 genus Advenella mimigardefordensis species 1 302406 0 118 310575 0 106 Advenella kashmirensis species 1 2 no rank 80841 0 236 Burkholderiales bacterium GJ-E10 species 1 1469502 0 104 1834205 0 132 Burkholderiales bacterium YL45 species 1 80864 7584 0 1 103 Comamonadaceae family 55 2 genus 566 0 52972 Polaromonas naphthalenivorans species 1 216465 0 166 400 0 2638319 no rank 1 species 1 Polaromonas sp. JS666 0 400 296591 Rhodoferax genus 5 1 5 28065 511 0 113 0 192843 species 1 Rhodoferax ferrireducens Rhodoferax antarcticus 1 species 81479 118 0 Rhodoferax koreense species 1 1842727 182 0 1484693 93 0 Rhodoferax saidenbachensis species 1 2 genus Candidatus Symbiobacter 1 1 81 0 1436289 1 species Candidatus Symbiobacter mobilis 80 0 1436290 1 1 352450 114 0 Simplicispira genus 2 2109915 113 0 Simplicispira sp. SC1-8 1 species 47420 0 429 1 2 Hydrogenophaga genus 4 1763535 105 0 Hydrogenophaga crassostreae species 1 no rank 2 0 322 2610897 0 138 1842537 species 1 Hydrogenophaga sp. RAC07 Hydrogenophaga sp. PBC 1 species 795665 0 184 614 0 283 6 1 genus 4 Comamonas 267 0 285 1 species Comamonas testosteroni 1082851 194 0 Comamonas serinivorans 1 species species 1 Comamonas kerstersii 0 147 225992 1649468 0 111 1 3 Melaminivora 2 genus 1 no rank 0 108 2641902 2109913 108 0 Melaminivora sp. SC2-9 species 1 2 1 0 131 238749 genus 2 Diaphorobacter 1 species Diaphorobacter polyhydroxybutyrativorans 129 0 1546149 1 genus 224 0 201096 Alicycliphilus denitrificans 1 species 179636 0 224 2 genus 0 227 2490452 109 0 1458425 species 1 Comamonadaceae bacterium A1 118 0 1458426 species 1 Comamonadaceae bacterium B1 genus 5 Delftia 805 0 80865 26 1 Delftia acidovorans 1 species 80866 0 195 1 species Delftia tsuruhatensis 191 0 180282 2 no rank 2613839 393 0 Delftia sp. HK171 1 species 1920191 187 0 Delftia sp. Cs1-4 species 1 742013 0 206 genus 2 0 170 665874 2626134 0 170 2 no rank species 1 Limnohabitans sp. 103DPR2 94 0 1678129 1678128 76 0 Limnohabitans sp. 63ED37-2 species 1 116 0 2678886 1 genus 1 species Melaminivora sp. SC2-7 0 116 2116657 3 genus Ottowia 6 1 0 199 219181 106 0 2109914 species 1 Ottowia sp. KADR8-3 0 87 2645081 1 no rank 1658672 0 87 Ottowia sp. oral taxon 894 1 species 1 genus 364316 0 250 250 0 364317 species 1 Verminephrobacter eiseniae 300 0 174951 5 1 2 genus Ramlibacter Ramlibacter tataouinensis 1 species 94132 295 0 1600 0 34072 15 1 5 genus Variovorax 866 0 34073 1 species Variovorax paradoxus 2 no rank 663243 448 0 species 1 Variovorax sp. PAMC 28711 0 209 1795631 239 0 2126319 species 1 Variovorax sp. PMC12 Variovorax boronicumulans 1 species 436515 271 0 1 33 12916 0 1033 Acidovorax 9 genus 721785 109 0 Acidovorax ebreus species 1 species 1 Acidovorax citrulli 0 162 80869 80867 0 167 Acidovorax avenae species 1 1 species Acidovorax sp. NA3 0 93 553814 2684926 469 0 4 no rank Acidovorax sp. KKS102 species 1 358220 118 0 1 species Acidovorax sp. T1 129 0 1858609 species 1 Acidovorax sp. RAC01 0 111 1842533 232721 111 0 Acidovorax sp. JS42 1 species 68 1 0 19850 119060 family 84 Burkholderiaceae genus 5 Ralstonia 23 1 0 1421 48736 Ralstonia pickettii 1 species 329 284 0 305 752 0 Ralstonia solanacearum species 1 105219 209 0 Ralstonia mannitolilytica species 1 Ralstonia insidiosa species 1 190721 153 0 genus 4 Polynucleobacter 10 1 0 601 44013 286 0 576611 species 1 Polynucleobacter asymbioticus 1835254 0 160 Polynucleobacter duraquae species 1 species 1 Polynucleobacter necessarius 145 0 576610 93217 1607 0 1 31 Pandoraea 10 genus species 1 Pandoraea apista 0 133 93218 573737 0 148 Pandoraea oxalativorans 1 species Pandoraea pnomenusa 1 species 93220 205 0 93221 0 475 Pandoraea pulmonicola species 1 110 0 656178 1 species Pandoraea vervacti 105 0 656179 1 species Pandoraea faecigallinarum 445709 0 131 Pandoraea thiooxydans species 1 93219 177 0 Pandoraea norimbergensis species 1 Pandoraea sputorum species 1 93222 0 92 Paraburkholderia 12 genus 1822464 2280 0 1 33 311230 0 174 Paraburkholderia terrae 1 species Paraburkholderia sprentiae 1 species 948107 0 202 Paraburkholderia phenoliruptrix species 1 252970 0 172 Paraburkholderia xenovorans species 1 36873 0 159 1 no rank 2615204 178 0 1 species Paraburkholderia sp. SOS3 178 0 1926494 186 0 169430 1 species Paraburkholderia hospita Paraburkholderia caribensis 1 species 75105 0 372 278 0 261302 species 1 Paraburkholderia phytofirmans 1 species Paraburkholderia phymatum 0 193 148447 species 1 Paraburkholderia fungorum 132 0 134537 Paraburkholderia aromaticivorans 1 species 2026199 201 0 0 2305 106589 54 1 9 genus Cupriavidus 0 297 367825 1 species Cupriavidus sp. USMAA1020 species 1 Cupriavidus pinatubonensis 0 166 248026 82541 193 0 Cupriavidus gilardii species 1 119219 342 0 Cupriavidus metallidurans species 1 2 no rank 0 660 2640874 Cupriavidus sp. USMAA2-4 1 species 876364 353 0 species 1 Cupriavidus sp. USMAHM13 307 0 1389192 68895 304 0 Cupriavidus basilensis species 1 species 1 Cupriavidus necator 289 0 106590 Burkholderia genus 41 1 385 32008 11237 0 28095 402 0 Burkholderia gladioli 1 species 0 5234 87882 19 species group Burkholderia pseudomultivorans species 1 1207504 137 0 1 species Burkholderia latens 178 0 488446 1 species Burkholderia lata 385 0 482957 101571 0 436 Burkholderia ubonensis species 1 152480 240 0 Burkholderia ambifaria species 1 species 1 [Pseudomonas] mesoacidophila 0 129 265293 762 0 95486 species 1 Burkholderia cenocepacia 1503055 108 0 Burkholderia territorii 1 species 95485 282 0 Burkholderia stabilis 1 species 134 0 152500 species 1 Burkholderia dolosa 1 species Burkholderia pyrrocinia 121 0 60550 Burkholderia diffusa 1 species 488732 114 0 Burkholderia metallica 1 species 488729 0 125 292 854 0 Burkholderia cepacia 1 species 87883 416 0 Burkholderia multivorans 1 species 1 species Burkholderia seminalis 0 152 488731 Burkholderia stagnalis species 1 1503054 163 0 Burkholderia vietnamiensis species 1 60552 312 0 0 186 488447 species 1 Burkholderia contaminans species group 7 3127 0 111527 1637841 262 0 Burkholderia sp. MSMB0852 1 species 1 species Burkholderia sp. MSMB0266 205 0 1637837 0 412 57975 1 species Burkholderia thailandensis 1517 0 28450 species 1 Burkholderia pseudomallei 1637831 0 218 Burkholderia sp. MSMB617WGS species 1 Burkholderia mallei 1 species 13373 0 299 species 1 Burkholderia oklahomensis 0 214 342113 no rank 11 0 1485 2613784 species 1 Burkholderia sp. PAMC 26561 0 104 1795043 species 1 Burkholderia sp. RPE67 0 165 758796 134 0 1678678 species 1 Burkholderia sp. HB1 1097668 149 0 Burkholderia sp. YI23 1 species 640512 148 0 Burkholderia sp. CCGE1003 species 1 1 species Burkholderia sp. 2002721687 148 0 1468409 Burkholderia sp. Bp5365 1 species 1740162 148 0 640510 0 160 Burkholderia sp. CCGE1001 1 species 1795874 0 111 Burkholderia sp. PAMC 28687 1 species Burkholderia sp. KJ006 1 species 416344 0 124 Burkholderia sp. Bp7605 1 species 1740163 94 0 41899 240 0 Burkholderia plantarii 1 species 0 364 337 species 1 Burkholderia glumae 1827195 217 0 1 genus 217 0 758793 species 1 Burkholderia sp. RPE64 2571159 114 0 genus 1 Paraburkholderia rhizoxinica species 1 412963 114 0 2 no rank 33809 407 0 beta proteobacterium CB 1 species 543913 197 0 1904640 0 210 Betaproteobacteria bacterium GR16-43 1 species 33 order Neisseriales 24 1 3281 0 206351 family 12 Chromobacteriaceae 25 1 1234 0 1499392 genus 2 Laribacter 1 1 143 0 168470 Laribacter hongkongensis 1 species 168471 142 0 0 163 885864 3 1 genus 2 Jeongeupia 160 0 2619593 1 no rank 1 species Jeongeupia sp. USM3 160 0 1906741 140 0 568394 4 1 2 genus Pseudogulbenkiania 136 0 2642558 no rank 1 136 0 748280 1 species Pseudogulbenkiania sp. NH8B 1 genus 0 119 187 no rank 1 119 0 2620219 1938604 0 119 Aquaspirillum sp. LM1 species 1 4 no rank 644 0 90153 Chromobacterium genus 4 1 15 535 644 0 species 1 Chromobacterium violaceum 188 0 536 species 1 Chromobacterium vaccinii 0 257 1108595 1 no rank 184 0 2641838 1 species Chromobacterium sp. ATCC 53434 0 184 2059672 1 11 481 2023 0 Neisseriaceae 20 family 1193515 0 170 genus 1 1 species Snodgrassella alvi 170 0 1196083 12 genus Neisseria 1034 0 482 29 1 487 264 0 Neisseria meningitidis species 1 0 70 490 1 species Neisseria sicca Neisseria gonorrhoeae species 1 485 68 0 70 0 1853278 species 1 Neisseria sp. 10023 0 78 326523 1 species Neisseria zoodegmatis 28091 82 0 Neisseria weaveri 1 species no rank 2 2623750 0 166 78 0 1853276 1 species Neisseria sp. 10022 655307 88 0 Neisseria sp. KEM232 1 species species 1 Neisseria lactamica 0 79 486 species 1 Neisseria elongata 0 72 495 56 0 488 1 species Neisseria mucosa 1 no rank 421605 0 353 0 353 2052837 species 1 Neisseriaceae bacterium DSM 100970 1 genus 74 0 538 539 0 74 Eikenella corrodens species 1 genus 3 Vitreoscilla 3 1 0 215 59 63 71 0 Vitreoscilla filiformis species 1 no rank 1 2627922 141 0 96942 141 0 Vitreoscilla sp. C1 1 species 71 0 166 1 genus species 1 Simonsiella muelleri 166 0 72 Rhodocyclales order 21 206389 2214 0 1 18 2 family Azonexaceae 5 1 152 0 2008795 1 genus 73029 0 147 species 1 Dechloromonas aromatica 147 0 259537 1 33 2008794 1684 0 Zoogloeaceae family 12 Azoarcus genus 5 1 24 12960 781 0 2 no rank 2629479 412 0 1 species Azoarcus sp. CIB 0 224 198107 748247 188 0 Azoarcus sp. KH32C 1 species Azoarcus sp. SY39 species 1 2067960 0 188 Azoarcus olearius species 1 418699 157 0 Thauera 6 genus 33057 870 0 1 28 96773 192 0 Thauera chlorobenzoica 1 species Thauera humireducens 1 species 1134435 0 151 59405 0 134 Thauera aromatica 1 species 2 no rank 365 0 2609274 Thauera sp. MZ1T species 1 85643 0 203 species 1 Thauera sp. K11 162 0 2005884 75787 0 360 1 9 Rhodocyclaceae family 6 no rank 1 110 0 75788 Rhodocyclaceae bacterium species 1 1898103 0 110 152 0 551759 1 1 2 genus Aromatoleum Aromatoleum aromaticum species 1 551760 0 151 1 1 89 0 146937 2 genus Azospira Azospira oryzae 1 species 146939 88 0 Alphaproteobacteria class 559 28211 0 219976 1 192 6 order 1093 0 2800060 6 family Hyphomonadaceae 1093 0 69657 19 1 16 1 524 0 85 genus 3 Hyphomonas 0 193 81032 species 1 Hyphomonas neptunium 315 0 2630699 1 no rank 1906738 0 315 Hyphomonas sp. Mor2 1 species 2723 0 550 1 6 Hirschia genus 2 Hirschia baltica species 1 2724 544 0 204441 0 12804 1 74 Rhodospirillales 65 order 71 1 0 4434 433 34 family Acetobacteraceae 2 genus Kozakia 1 1 0 127 153497 Kozakia baliensis species 1 153496 126 0 Acidiphilium genus 3 522 0 582 1 26 0 268 524 1 species Acidiphilium cryptum 62140 0 288 Acidiphilium multivorum species 1 441 353 0 1 4 Gluconobacter 3 genus 0 90 318683 species 1 Gluconobacter albidus 442 0 259 Gluconobacter oxydans 1 species Komagataeibacter genus 5 1434011 680 0 1 13 121 0 33995 1 species Komagataeibacter europaeus 265960 0 179 Komagataeibacter nataicola species 1 1 species Komagataeibacter xylinus 0 267 28448 Komagataeibacter medellinensis 1 species 1177712 0 100 2 genus Granulibacter 285 0 364409 3 1 species 1 Granulibacter bethesdensis 282 0 364410 0 73 1602345 1 1 genus 2 Parasaccharibacter 0 72 1510841 species 1 Parasaccharibacter apium Roseomonas genus 3 125216 526 0 1 17 no rank 1 2617492 0 271 271 0 2018065 1 species Roseomonas sp. FDAARGOS_362 species 1 Roseomonas gilardii 0 238 257708 121 0 91914 1 genus Asaia bogorensis species 1 91915 121 0 8 genus Acetobacter 24 1 0 1277 434 0 94 151157 subgenus 1 Acetobacter aceti 1 species 435 0 94 65959 96 0 Acetobacter pomorum species 1 117 0 446692 species 1 Acetobacter senegalensis 1 species Acetobacter oryzifermentans 0 142 1633874 1076596 125 0 Acetobacter persici species 1 104102 0 182 Acetobacter tropicalis species 1 0 497 438 species 1 Acetobacter pasteurianus Neoasaia genus 2 1 2 320496 98 0 Neoasaia chiangmaiensis 1 species 320497 96 0 2 1 241 0 89583 2 genus Gluconacetobacter 33996 239 0 Gluconacetobacter diazotrophicus 1 species family 30 Rhodospirillaceae 8296 0 41295 125 1 Azospirillum genus 5 1 83 191 2302 0 447 0 528244 species 1 Azospirillum thiophilum Azospirillum brasilense species 1 192 0 705 0 286 1226968 species 1 Azospirillum humicireducens Azospirillum lipoferum species 1 193 781 0 Magnetospira 2 genus 1182780 0 315 1 5 2685734 310 0 no rank 1 0 310 1288970 1 species Magnetospira sp. QH-2 Nitrospirillum 2 genus 1543705 0 410 1 2 Nitrospirillum amazonense 1 species 28077 408 0 1804663 208 0 1 genus 208 0 1549855 species 1 Haematospirillum jordaniae Thalassospira genus 3 1 19 168934 0 789 384 0 2048283 species 1 Thalassospira sp. CSC3H3 1 species Thalassospira xiamenensis 0 386 220697 1 7 1543704 0 269 Niveispirillum 2 genus Niveispirillum cyanobacteriorum species 1 1612173 262 0 9 1 0 392 171436 2 genus Tistrella 1 species Tistrella mobilis 0 383 171437 1 10 1081 733 0 Rhodospirillum genus 3 species 1 Rhodospirillum centenum 0 396 34018 Rhodospirillum rubrum 1 species 1085 0 327 1 2 1612157 0 249 Pararhodospirillum 2 genus 1 species Pararhodospirillum photometricum 0 247 1084 1 65 13134 1477 0 Magnetospirillum 5 genus 0 423 55518 species 1 Magnetospirillum gryphiswaldense Magnetospirillum magneticum 1 species 84159 314 0 0 675 2617991 no rank 2 1663591 336 0 Magnetospirillum sp. XM-1 species 1 1 species Magnetospirillum sp. ME-1 339 0 1639348 1 2 1263978 1027 0 Candidatus Endolissoclinum 2 genus 1263979 1025 0 Candidatus Endolissoclinum faulkneri species 1 9 order Pelagibacterales 102440 0 54526 21 1 Pelagibacteraceae 6 family 1 48 1655514 0 95804 Candidatus Pelagibacter 3 genus 1 12 198251 0 40763 no rank 1 2647897 5907 0 1002672 0 5907 Candidatus Pelagibacter sp. IMCC9063 1 species Candidatus Pelagibacter ubique species 1 198252 34844 0 1655516 54993 0 no rank 2 744985 7927 0 alpha proteobacterium HIMB59 1 species alpha proteobacterium HIMB5 species 1 859653 47066 0 2045213 0 6615 1 16 Candidatus Fonsibacter 2 genus Candidatus Fonsibacter ubiquis species 1 1925548 0 6599 204457 0 15835 1 57 Sphingomonadales order 82 family 59 Sphingomonadaceae 0 10886 41297 128 1 10 genus Sphingopyxis 0 2125 165697 56 1 Sphingopyxis granuli species 1 267128 0 243 Sphingopyxis macrogoltabida 1 species 33050 0 400 883 0 2614943 4 no rank Sphingopyxis sp. 113P3 species 1 292913 166 0 species 1 Sphingopyxis sp. LPB0140 0 299 1913578 1866325 0 203 Sphingopyxis sp. MG 1 species Sphingopyxis sp. QXT-31 species 1 1357916 215 0 Sphingopyxis alaskensis species 1 117207 190 0 Sphingopyxis fribergensis 1 species 1515612 183 0 Sphingopyxis terrae species 1 33052 0 170 2 genus Zymomonas 2 1 408 0 541 species 1 Zymomonas mobilis 406 0 542 genus 2 Citromicrobium 4 1 0 316 72173 no rank 1 0 312 2630544 Citromicrobium sp. JL477 species 1 1634516 0 312 genus 3 Sphingorhabdus 442 0 1434046 12 1 2 no rank 430 0 2614947 225 0 1806885 1 species Sphingorhabdus sp. M41 species 1 Sphingorhabdus sp. YGSMI21 0 205 2077182 1 1 254 0 150203 2 genus Blastomonas 1 no rank 253 0 2626550 0 253 1842535 1 species Blastomonas sp. RAC04 1 genus 0 232 2709685 0 232 266812 species 1 Sphingorhabdus flavimaris 27 1 904 0 165696 5 genus Novosphingobium species 1 Novosphingobium resinovorum 270 0 158500 179 0 48935 species 1 Novosphingobium aromaticivorans 205844 0 223 Novosphingobium pentaromativorans species 1 2644732 0 205 no rank 1 0 205 702113 1 species Novosphingobium sp. PP1Y genus 15 Sphingomonas 3492 0 13687 106 1 0 213 93064 1 species Sphingomonas koreensis 0 240 1549858 1 species Sphingomonas taxi 190 0 1560345 species 1 Sphingomonas panacis Sphingomonas melonis species 1 152682 158 0 1437 0 196159 no rank 6 Sphingomonas sp. LM7 species 1 1938607 0 186 1 species Sphingomonas sp. Cra20 210 0 1327635 1390395 0 537 Sphingomonas sp. LK11 1 species 745310 222 0 Sphingomonas sp. MM-1 1 species species 1 Sphingomonas sp. NIC1 125 0 1961362 1 species Sphingomonas sp. KC8 0 157 1030157 2 species Sphingomonas wittichii 325 1 668 0 160791 Sphingomonas sp. DC-6 strain 1 1283312 0 343 1609977 0 207 Sphingomonas hengshuiensis species 1 Sphingomonas sanxanigenens 1 species 397260 273 0 1 106 165695 2200 0 Sphingobium 15 genus Sphingobium chlorophenolicum species 1 46429 142 0 120107 0 111 Sphingobium cloacae 1 species Sphingobium indicum 1 species 332055 0 143 species 1 Sphingobium hydrophobicum 141 0 1673076 0 122 1332080 1 species Sphingobium baderi 1 species Sphingobium japonicum 0 178 332056 Sphingobium yanoikuyae species 1 13690 0 224 0 924 2611147 6 no rank Sphingobium sp. RAC03 species 1 1843368 0 159 169 0 1315974 species 1 Sphingobium sp. TKS 0 130 407020 1 species Sphingobium sp. MI1205 1855519 127 0 Sphingobium sp. EP60837 species 1 Sphingobium sp. YBL2 1 species 484429 0 191 Sphingobium sp. SYK-6 1 species 627192 0 148 109 0 76947 species 1 Sphingobium herbicidovorans 1 3 1649486 0 229 Rhizorhabdus genus 2 Rhizorhabdus dicambivorans 1 species 1850238 226 0 156 0 2685927 1 genus 0 156 1921510 species 1 Sphingomonas sp. JJ-A5 Erythrobacteraceae 22 family 1 62 335929 4892 0 no rank 6 1258 0 2800788 46 1 0 829 1041 genus 3 Erythrobacter Erythrobacter litoralis species 1 39960 578 0 205 0 1112 species 1 Porphyrobacter neustonensis genus 3 Porphyrobacter 35 1 429 0 1111 2 no rank 2683265 0 394 182 0 2023229 species 1 Porphyrobacter HT-58-2 212 0 1896196 1 species Porphyrobacter sp. LM 6 1 genus 2800682 0 231 Altererythrobacter namhicola 1 species 645517 231 0 2800686 0 360 2 genus 0 174 692370 species 1 Altererythrobacter dongtanensis 0 186 1982042 1 species Altererythrobacter mangrovi genus 2 1143 0 1855416 232 0 266951 species 1 Erythrobacter seohaensis Erythrobacter flavus species 1 192812 911 0 1 genus 2800685 0 156 543877 156 0 Altererythrobacter marensis 1 species Altererythrobacter genus 4 1 46 361177 0 631 1 species Altererythrobacter atlanticus 0 237 1267766 1 species Altererythrobacter ishigakiensis 137 0 476157 Altererythrobacter epoxidivorans species 1 361183 211 0 2800681 0 545 genus 2 0 313 1648404 1 species Erythrobacter atlanticus Erythrobacter gangjinensis 1 species 502682 0 232 1 17 1295327 0 506 Croceicoccus genus 3 species 1 Croceicoccus naphthovorans 0 198 1348774 0 291 450378 1 species Croceicoccus marinus 82117 0 2775 8 no rank Polymorphum genus 2 991903 0 428 1 16 412 0 991904 1 species Polymorphum gilvum 359 0 213485 2 1 2 genus Micavibrio 357 0 349221 1 species Micavibrio aeruginosavorus 0 1636 62654 2 clade Candidatus Puniceispirillum 2 genus 767891 0 1636 1 10 Candidatus Puniceispirillum marinum 1 species 767892 0 1626 2 genus Phreatobacter 0 352 1632780 15 1 species 1 Phreatobacter sp. S-12 0 337 1868589 1191478 0 188 order 1 188 0 1191479 1 family genus 1 162171 188 0 1124597 188 0 Magnetococcus marinus species 1 204455 19054 0 1 51 Rhodobacterales 85 order 1 355 31989 19003 0 Rhodobacteraceae family 84 2 genus 263377 782 0 no rank 1 2640570 0 339 1 species Yangia sp. CCB-MM3 339 0 1792508 1 species Thiobacimonas profunda 443 0 1229727 3 1 0 301 299261 2 genus Tateyamaria species 1 Tateyamaria omphalii 0 298 299262 Roseibacterium 2 genus 159345 0 311 1 4 species 1 Roseibacterium elongatum 307 0 159346 32 1 2058 0 265 genus 9 Paracoccus Paracoccus denitrificans species 1 266 0 279 0 223 2065379 species 1 Paracoccus sp. CBA4604 Paracoccus yeei 1 species 147645 0 336 1077935 296 0 Paracoccus zhejiangensis species 1 1 no rank 246570 267 0 1 species Paracoccus sp. BM15 267 0 1529068 0 234 34004 species 1 Paracoccus aminovorans species 1 Paracoccus aminophilus 234 0 34003 157 0 1945662 species 1 Paracoccus contaminans 319 0 191028 1 genus 133924 0 319 Leisingera methylohalidivorans 1 species 1649279 214 0 genus 1 Ruegeria mobilis species 1 379347 0 214 genus 2 Thioclava 0 261 285107 2 1 1915078 0 259 Thioclava nitratireducens species 1 2 genus Confluentimicrobium 343 0 1609958 1 1 342 0 2643318 1 no rank 342 0 1609966 1 species Confluentimicrobium sp. EMB200-NS6 92944 272 0 2 genus Ketogulonicigenium vulgare species 1 92945 0 155 Ketogulonicigenium robustum species 1 92947 117 0 Pelagibaca 2 genus 360528 0 435 1 1 Pelagibaca abyssi 1 species 1250539 434 0 305 0 74030 1 1 2 genus Roseovarius 215743 0 304 Roseovarius mucosus species 1 188905 267 0 1 4 Jannaschia 2 genus 0 263 2645469 1 no rank 0 263 290400 species 1 Jannaschia sp. CCS1 Marinovum 2 genus 1 1 367771 0 398 397 0 42444 1 species Marinovum algicola genus 3 Roseobacter 592 0 2433 3 1 2434 317 0 Roseobacter denitrificans species 1 0 272 42443 species 1 Roseobacter litoralis genus 1 289 0 74032 Antarctobacter heliothermus species 1 74033 0 289 1 3 60136 0 690 Sulfitobacter 3 genus no rank 1 196795 0 392 0 392 1917485 species 1 Sulfitobacter sp. AM1-D1 1 species Sulfitobacter pseudonitzschiae 295 0 1402135 11 1 0 721 97050 genus 3 Ruegeria 1 no rank 225 0 2625375 0 225 292414 1 species Ruegeria sp. TM1040 1 species Ruegeria pomeroyi 485 0 89184 genus 4 Labrenzia 39 1 973 0 478070 no rank 2 2648686 627 0 0 283 1674922 1 species Labrenzia sp. CP4 344 0 2021862 1 species Labrenzia sp. VG12 187304 0 307 Labrenzia aggregata 1 species 219 0 119541 1 genus Rhodobaca barguzinensis 1 species 441209 219 0 Pannonibacter genus 2 227873 347 0 1 10 Pannonibacter phragmitetus species 1 121719 0 337 1 17 1060 0 1328 Rhodobacter genus 5 1061 234 0 Rhodobacter capsulatus species 1 no rank 2 196779 0 511 0 254 1850250 1 species Rhodobacter sp. LPB0142 Rhodobacter sp. CZR27 1 species 2033869 0 257 Rhodobacter sphaeroides species 1 1063 0 566 309512 0 277 1 3 Dinoroseobacter 2 genus Dinoroseobacter shibae 1 species 215813 274 0 1 4 53945 761 0 Octadecabacter genus 4 0 266 53946 1 species Octadecabacter arcticus 1 species Octadecabacter antarcticus 276 0 1217908 Octadecabacter temperatus 1 species 1458307 215 0 1 genus 2211641 0 289 1 species Loktanella vestfoldensis 289 0 245188 2 no rank 341 0 58840 2033435 186 0 Rhodobacteraceae bacterium QY30 species 1 0 155 1904441 1 species Rhodobacteraceae bacterium genus 1 1579315 0 216 1579316 0 216 Halocynthiibacter arcticus species 1 0 316 1284657 1 genus 316 0 1284658 species 1 Planktomarina temperata 1 genus 58842 428 0 1 no rank 0 428 2624628 Sagittula sp. P11 species 1 2009329 428 0 36 1 1993 0 302485 genus 5 Phaeobacter 568 0 60890 1 species Phaeobacter gallaeciensis Phaeobacter piscinae 1 species 1580596 470 0 193 0 1844006 1 species Phaeobacter porticola 726 0 221822 1 species Phaeobacter inhibens 1 13 34008 0 1011 Rhodovulum 4 genus 0 526 2631432 2 no rank 0 276 308754 1 species Rhodovulum sp. MB263 1564506 250 0 Rhodovulum sp. P5 species 1 Rhodovulum sulfidophilum 1 species 35806 472 0 5 1 1144 0 875170 genus 5 Celeribacter 1 species Celeribacter manganoxidans 0 340 1411902 1 species Celeribacter marinus 179 0 1397108 Celeribacter indicus 1 species 1208324 352 0 species 1 Celeribacter ethanolicus 0 268 1758178 Marivivens 2 genus 1759396 0 150 1 1 2622455 149 0 1 no rank Marivivens sp. JLT3646 species 1 1920883 149 0 1 5 1097466 297 0 Defluviimonas genus 2 species 1 Defluviimonas alba 0 292 1335048 20 order Caulobacterales 0 3078 204458 9 1 1 52 76892 0 3069 Caulobacteraceae family 19 Caulobacter genus 6 75 1386 0 1 43 species 1 Caulobacter vibrioides 0 374 155892 Caulobacter segnis 1 species 88688 0 222 Caulobacter henricii species 1 69395 0 212 species 1 Caulobacter mirabilis 0 254 69666 0 281 2648921 1 no rank 0 281 366602 1 species Caulobacter sp. K31 1 4 76890 0 148 Asticcacaulis genus 2 Asticcacaulis excentricus species 1 78587 144 0 Brevundimonas 7 genus 1 48 41275 1065 0 Brevundimonas subvibrioides species 1 74313 0 203 Brevundimonas naejangsanensis 1 species 588932 0 159 Brevundimonas vesicularis 1 species 41276 112 0 543 0 2622653 no rank 3 0 131 1827469 species 1 Brevundimonas sp. GW460-12-10-14-LB2 192 0 1532555 species 1 Brevundimonas sp. DS20 species 1 Brevundimonas sp. LM2 220 0 1938605 0 257 20 1 1 2 genus Phenylobacterium 284016 0 256 Phenylobacterium zucineum species 1 1 no rank 81440 0 161 Caulobacteraceae bacterium OTSz_A_272 1 species 1759059 161 0 766 0 14807 1 10 Rickettsiales order 56 5761 0 775 9 1 28 family Rickettsiaceae 25 tribe 33988 0 5307 Rickettsia genus 23 780 0 4487 1 371 species group 2 925 0 1129742 Rickettsia bellii 1 species 33990 598 0 species 1 Rickettsia canadensis 0 327 788 114292 1059 0 species group 2 1 species Rickettsia prowazekii 0 537 782 0 522 785 species 1 Rickettsia typhi 0 1609 114277 species group 17 Rickettsia philipii 1 species 1105106 0 43 1 species Rickettsia rickettsii 0 57 783 786 176 0 Rickettsia akari 1 species Rickettsia heilongjiangensis species 1 226665 46 0 species 1 Rickettsia parkeri 27 0 35792 35791 0 45 Rickettsia massiliae 1 species Rickettsia amblyommatis species 1 33989 0 78 781 0 45 Rickettsia conorii species 1 species 1 Rickettsia slovaca 7 0 35794 Rickettsia monacensis species 1 109232 0 195 35788 28 0 Rickettsia africae 1 species 33991 50 0 Rickettsia montanensis 1 species 47589 0 178 Rickettsia peacockii 1 species 221 0 42862 species 1 Rickettsia felis 38 0 35790 species 1 Rickettsia japonica 33992 73 0 Rickettsia rhipicephali 1 species species 1 Rickettsia australis 0 302 787 no rank 1 523 0 114295 523 0 337479 1 species Rickettsia endosymbiont of Bemisia tabaci 1 6 69474 820 0 Orientia 2 genus 0 814 784 species 1 Orientia tsutsugamushi genus 2 Candidatus Phycorickettsia 3 1 0 445 2115980 0 442 2115978 species 1 Candidatus Phycorickettsia trachydisci 0 1058 1699067 1 no rank Rickettsiales bacterium Ac37b 1 species 1528098 1058 0 Anaplasmataceae 23 family 1 16 942 7528 0 1 5 33993 0 518 Neorickettsia genus 4 species 1 Neorickettsia sennetsu 0 146 951 184 0 33994 species 1 Neorickettsia helminthoeca 0 183 950 1 species Neorickettsia risticii 21 1 3408 0 943 genus 6 Ehrlichia species group 4 2815 0 106178 688 0 945 species 1 Ehrlichia chaffeensis Ehrlichia canis 1 species 944 710 0 816 0 779 1 species Ehrlichia ruminantium species 1 Ehrlichia muris 0 601 35795 0 572 106181 1 no rank 572 0 391036 1 species Ehrlichia sp. HF 1 3 768 315 0 Anaplasma 4 genus 81 0 769 species 1 Anaplasma centrale 0 149 106179 species group 1 948 149 0 Anaplasma phagocytophilum species 1 Anaplasma marginale 1 species 770 82 0 0 3271 952 8 tribe 86 1 3271 0 953 genus 8 Wolbachia no rank 7 3185 0 2640676 species 1 Wolbachia endosymbiont of Drosophila melanogaster 0 420 163164 0 446 66084 1 species Wolbachia sp. wRi 80849 359 0 Wolbachia endosymbiont of Brugia malayi species 1 77038 0 846 Wolbachia endosymbiont of Drosophila simulans species 1 0 386 77551 species 1 Wolbachia endosymbiont of Onchocerca volvulus 246273 335 0 Wolbachia endosymbiont of Cimex lectularius species 1 100901 0 393 Wolbachia endosymbiont of Onchocerca ochengi species 1 1 3 1328881 450 0 Candidatus Midichloriaceae 3 family 1 3 411566 447 0 Candidatus Midichloria 2 genus Candidatus Midichloria mitochondrii 1 species 234827 444 0 9 order Holosporales 4 1 0 1342 1921002 1 1 44746 428 0 Holosporaceae 2 family 0 427 204454 no rank 1 endosymbiont of Acanthamoeba sp. UWC8 1 species 86106 427 0 3 family Candidatus Paracaedibacteraceae 0 401 1777752 10 1 1521255 0 391 1 8 Candidatus Paracaedibacter genus 2 91604 383 0 Candidatus Paracaedibacter acanthamoebae 1 species Caedimonadaceae family 3 2100208 509 0 1 6 1 1 1509243 0 503 Candidatus Nucleicultrix genus 2 Candidatus Nucleicultrix amoebiphila 1 species 1509244 502 0 2800059 282 0 2 order family 2 282 0 2800061 Maricaulis 2 genus 74317 0 282 1 1 Maricaulis maris species 1 74318 281 0 Parvularculales order 4 255473 310 0 1 2 0 308 255474 5 1 family 3 Parvularculaceae 303 0 208215 4 1 2 genus Parvularcula 299 0 208216 1 species Parvularcula bermudensis 1 262 356 0 45776 Rhizobiales order 211 2756 0 45401 45 1 family 19 Hyphomicrobiaceae Pelagibacterium genus 2 1082930 0 182 1 4 Pelagibacterium halotolerans species 1 531813 178 0 Rhodoplanes genus 2 1 9 29407 0 327 0 318 2619116 no rank 1 0 318 674703 species 1 Rhodoplanes sp. Z2-YC6860 genus 2 Blastochloris 5 1 274 0 59282 1079 0 269 Blastochloris viridis species 1 33 1 0 863 46913 4 genus Devosia 196773 830 0 no rank 3 1643450 0 254 Devosia sp. H5989 species 1 Devosia sp. A16 species 1 1736675 348 0 species 1 Devosia sp. I507 0 228 2083786 81 687 0 1 42 Hyphomicrobium genus 4 2619925 0 231 1 no rank 0 231 717785 species 1 Hyphomicrobium sp. MC1 161 0 1427356 1 species Hyphomicrobium nitrativorans Hyphomicrobium denitrificans 1 species 53399 0 253 2 genus Rhodomicrobium 4 1 193 0 1068 1 species Rhodomicrobium vannielii 0 189 1069 185 0 119044 4 1 2 genus Filomicrobium 0 181 1608628 1 species Candidatus Filomicrobium marinum 1 6 31993 0 619 Methylocystaceae family 6 10 1 262 0 425 2 genus Methylosinus Methylosinus trichosporium species 1 426 0 252 1 7 133 351 0 Methylocystis 3 genus 1 species Methylocystis bryophila 164 0 655015 1 no rank 0 180 2625913 187303 0 180 Methylocystis sp. SC2 species 1 Aurantimonadaceae family 7 1 7 255475 0 1100 2 genus Aureimonas 12 1 242 0 414371 2615206 230 0 1 no rank 1 species Aureimonas sp. AU20 230 0 1349819 Martelella genus 4 1 30 293088 851 0 2629616 270 0 no rank 1 270 0 686597 species 1 Martelella sp. AD-3 species 1 Martelella endophytica 0 214 1486262 1 species Martelella mediterranea 0 337 293089 2036754 641 0 1 3 Chelatococcaceae family 4 28209 638 0 1 22 Chelatococcus 3 genus 1 no rank 2638111 308 0 0 308 1702325 species 1 Chelatococcus sp. CO-6 0 308 444444 species 1 Chelatococcus daeguensis 1 21 119045 3746 0 Methylobacteriaceae family 15 123 1 0 2306 407 9 genus Methylobacterium 0 251 418223 1 species Methylobacterium phyllosphaerae 1 species Methylobacterium radiotolerans 0 244 31998 3 no rank 749 0 2615210 1479019 230 0 Methylobacterium sp. C1 species 1 Methylobacterium sp. 4-46 species 1 426117 0 345 925818 0 174 Methylobacterium sp. AMS5 species 1 1 species Methylobacterium nodulans 351 0 114616 Methylobacterium aquaticum 1 species 270351 338 0 Methylobacterium oryzae species 1 334852 0 250 2282523 0 1186 genus 3 1 species Methylobacterium zatmanii 0 146 29429 1 species Methylobacterium extorquens 0 675 408 223967 365 0 Methylobacterium populi species 1 Microvirga genus 2 186650 0 233 1 6 227 0 1882682 species 1 Microvirga ossetica 41294 0 7282 1 65 Bradyrhizobiaceae family 26 genus 2 Rhodopseudomonas 20 1 0 1568 1073 0 1548 1076 1 species Rhodopseudomonas palustris 1 10 911 337 0 Nitrobacter genus 3 0 160 913 1 species Nitrobacter winogradskyi 1 species Nitrobacter hamburgensis 0 167 912 1 1 40136 210 0 Oligotropha genus 2 209 0 40137 species 1 Oligotropha carboxidovorans 374 3625 0 1 124 Bradyrhizobium 11 genus 0 269 1274631 species 1 Bradyrhizobium icense species 1 Bradyrhizobium oligotrophicum 0 336 44255 6 no rank 2631580 0 1852 Bradyrhizobium sp. SK17 species 1 2057741 0 341 species 1 Bradyrhizobium sp. ORS 285 303 0 115808 species 1 Bradyrhizobium sp. BTAi1 323 0 288000 Bradyrhizobium sp. species 1 376 275 0 species 1 Bradyrhizobium sp. ORS 278 0 324 114615 0 286 1223566 1 species Bradyrhizobium sp. CCGE-LA001 Bradyrhizobium japonicum 1 species 375 505 0 1355477 539 0 Bradyrhizobium diazoefficiens 1 species genus 2 Variibacter 6 1 0 241 1649510 species 1 Variibacter gotjawalensis 235 0 1333996 0 1236 85413 56 1 5 genus Bosea no rank 3 2653178 864 0 species 1 Bosea sp. PAMC 26642 0 251 1792307 Bosea sp. RAC05 1 species 1842539 299 0 Bosea sp. AS-1 species 1 2015316 0 314 0 316 1526658 1 species Bosea vaviloviae 9 1 9283 0 772 18 family Bartonellaceae 200 1 0 9274 773 17 genus Bartonella 0 635 56426 species 1 Bartonella clarridgeiae species 1 Bartonella henselae 0 485 38323 1 species Bartonella quintana 0 426 803 307 0 388640 1 species Bartonella australis Bartonella ancashensis species 1 1318743 538 0 6 no rank 2645622 4082 0 Bartonella sp. Raccoon60 species 1 1933912 667 0 515256 0 639 Bartonella sp. 1-1C species 1 Bartonella sp. JB63 1 species 1933907 0 697 1933910 708 0 Bartonella sp. A1379B 1 species 698 0 1933906 species 1 Bartonella sp. JB15 1 species Bartonella sp. WD16.2 673 0 1933904 Bartonella grahamii species 1 33045 487 0 Bartonella bacilliformis species 1 774 0 599 1 species Bartonella vinsonii 570 0 33047 species 1 Bartonella apis 0 456 1686310 Bartonella tribocorum species 1 85701 0 489 Rhizobiaceae family 55 1 108 82115 0 12009 68 1 0 2396 34019 6 genus Liberibacter 513 0 309868 species 1 Candidatus Liberibacter americanus 385 0 34020 1 species Candidatus Liberibacter africanus 34021 380 0 Candidatus Liberibacter asiaticus species 1 556287 0 439 Candidatus Liberibacter solanacearum species 1 1 species Liberibacter crescens 611 0 1273132 342 0 323620 7 1 2 genus Shinella no rank 1 335 0 2643062 879274 335 0 Shinella sp. HZN7 1 species 10 no rank 0 2544 227292 1 63 28105 0 2064 Sinorhizobium 7 genus 663276 585 0 species group 1 380 0 585 Sinorhizobium fredii species 1 460 0 2613772 no rank 2 0 259 1842534 1 species Sinorhizobium sp. RAC02 Sinorhizobium sp. CCBAU 05631 species 1 794846 201 0 242 0 194963 1 species Sinorhizobium americanum 0 476 382 species 1 Sinorhizobium meliloti 110321 238 0 Sinorhizobium medicae species 1 1 1 106591 0 480 Ensifer genus 3 716925 0 210 Ensifer sojae 1 species Ensifer adhaerens 1 species 106592 269 0 6619 0 227290 36 no rank Neorhizobium 2 genus 1525371 0 369 1 1 Neorhizobium galegae 1 species 399 368 0 7 genus Agrobacterium 1642 0 357 38 1 373 165 0 Agrobacterium vitis species 1 0 886 1183400 species group 2 Agrobacterium tumefaciens 1 species 358 729 0 Agrobacterium fabrum species 1 1176649 157 0 no rank 2 2632611 0 400 Agrobacterium sp. H13-3 species 1 861208 0 129 1 species Agrobacterium sp. RAC06 271 0 1842536 359 153 0 Agrobacterium rhizogenes 1 species 347 1 4608 0 379 27 genus Rhizobium 2613769 1935 0 21 no rank 1571470 0 183 Rhizobium sp. ACO-34A species 1 0 114 1981173 species 1 Rhizobium sp. NXC14 0 176 1703969 1 species Rhizobium sp. N324 Rhizobium sp. N871 1 species 1703968 0 2 1703966 0 20 Rhizobium sp. N731 1 species 424182 0 156 Rhizobium sp. IRBG74 1 species 2020311 113 0 Rhizobium sp. Kim5 1 species Rhizobium sp. N1341 1 species 1703962 0 4 1 species Rhizobium sp. IE4771 117 0 1301032 1703965 1 0 Rhizobium sp. N6212 species 1 1 species Rhizobium sp. CIAT894 156 0 2020312 species 1 Rhizobium sp. N741 0 5 1703967 species 1 Rhizobium sp. 10195 0 194 2028343 1 species Rhizobium sp. N113 4 0 1703960 Rhizobium sp. N1314 1 species 1703961 0 20 species 1 Rhizobium sp. NXC24 0 205 2048897 species 1 Rhizobium sp. TAL182 0 46 2020313 1703964 1 0 Rhizobium sp. N621 species 1 1869170 128 0 Rhizobium sp. S41 1 species 0 130 1914541 1 species Rhizobium sp. Y9 1125847 0 160 Rhizobium sp. NT-26 species 1 200 0 398 1 species Rhizobium tropici 519 0 29449 species 1 Rhizobium etli species 1 Rhizobium gallicum 259 0 56730 Rhizobium leguminosarum 1 species 384 0 993 396 0 355 Rhizobium phaseoli 1 species 9 1 1585 0 118882 20 family Brucellaceae 1 23 528 951 0 Ochrobactrum genus 5 Ochrobactrum pituitosum 1 species 571256 284 0 529 185 0 Ochrobactrum anthropi 1 species 419475 0 225 Ochrobactrum pseudogrignonense species 1 271865 0 234 Ochrobactrum sp. A44 1 species 14 genus Brucella 228 1 625 0 234 Brucella pinnipedialis 1 species 120576 37 0 15 0 235 species 1 Brucella abortus 0 55 981386 species 1 Brucella vulpis 4 no rank 2632610 164 0 1885919 55 0 Brucella sp. 141012304 species 1 species 1 Brucella sp. 09RB8471 51 0 1149952 1 species Brucella sp. 09RB8910 0 46 1844051 Brucella sp. 2002734562 1 species 1891098 0 12 Brucella ovis species 1 236 8 0 30 0 36855 species 1 Brucella canis 444163 0 13 Brucella microti 1 species 1 species Brucella suis 33 0 29461 species 1 Brucella ceti 0 33 120577 0 9 29459 species 1 Brucella melitensis 20 family Phyllobacteriaceae 4106 0 69277 34 1 2 genus Hoeflea 10 1 303 0 274591 2614931 293 0 no rank 1 1620421 0 293 Hoeflea sp. IMCC20628 1 species Phyllobacterium 2 genus 1 3 28100 202 0 Phyllobacterium zundukense species 1 1867719 199 0 1 9 31988 0 308 Aminobacter genus 2 1 species Aminobacter aminovorans 0 299 83263 2 genus Nitratireductor 319 0 245876 7 1 0 312 472175 species 1 Nitratireductor basaltis 9 genus Mesorhizobium 0 2783 68287 116 1 Mesorhizobium australicum species 1 536018 0 246 313 0 381 1 species Mesorhizobium loti 321 0 2066070 1 species Mesorhizobium japonicum Mesorhizobium amorphae 1 species 71433 0 344 315 0 593909 1 species Mesorhizobium opportunistum 325217 0 378 no rank 1 0 378 278153 1 species Mesorhizobium sp. WSM1497 1670800 323 0 Mesorhizobium sp. B7 1 species 0 427 39645 species 1 Mesorhizobium ciceri Chelativorans genus 2 1 15 449972 0 157 142 0 2643807 no rank 1 266779 142 0 Chelativorans sp. BNC1 1 species 4 family 45404 0 385 genus 2 Beijerinckia 0 192 532 8 1 Beijerinckia indica 1 species 533 184 0 7 1 0 193 120652 2 genus Methylocella Methylocella silvestris species 1 199596 0 186 119042 0 772 no rank 6 20 1 0 226 1484898 genus 2 Methyloceanibacter 206 0 1384459 1 species Methyloceanibacter caenitepidi 0 208 1734920 4 1 genus 2 Pseudorhodoplanes species 1 Pseudorhodoplanes sinuspersici 0 204 1235591 Hartmannibacter genus 2 1 11 1572860 0 338 0 327 1482074 1 species Hartmannibacter diazotrophicus 0 802 335928 15 1 family 7 Xanthobacteraceae 6 239 0 1 13 Azorhizobium genus 2 7 226 0 Azorhizobium caulinodans 1 species 2 genus Xanthobacter 0 254 279 8 1 Xanthobacter autotrophicus 1 species 280 0 246 2 genus Starkeya 5 1 0 294 152053 0 289 921 species 1 Starkeya novella family 3 Rhodobiaceae 3 1 428 0 119043 1 18 256616 425 0 Parvibaculum genus 2 1 species Parvibaculum lavamentivorans 407 0 256618 7 class Acidithiobacillia 1 1 0 387 1807140 1 9 225057 386 0 Acidithiobacillales 6 order Acidithiobacillaceae 5 family 1 9 225058 0 377 0 368 119977 10 1 4 genus Acidithiobacillus 0 139 33059 1 species Acidithiobacillus caldus 920 0 84 Acidithiobacillus ferrooxidans 1 species 1 species Acidithiobacillus ferrivorans 0 135 160808 clade 352 1783270 91234 0 0 123 65842 phylum 3 Fibrobacteria 3 class 1 2 204430 0 123 order 2 218872 121 0 121 0 204431 2 1 2 family Fibrobacteraceae 832 0 119 genus 1 Fibrobacter succinogenes 1 species 833 0 119 phylum 1 456828 215 0 456826 0 215 1 genus 456827 0 215 Candidatus Cloacimonas acidaminovorans 1 species 68336 90264 0 340 clade 1134404 813 0 6 phylum 6 class Ignavibacteria 4 1 0 813 795747 3 1 0 809 795748 order 5 Ignavibacteriales 1 family 117 0 1334117 0 117 1134403 1 genus species 1 Melioribacter roseus 117 0 1134405 795749 689 0 1 3 Ignavibacteriaceae family 3 1 1 795750 0 686 Ignavibacterium genus 2 591197 685 0 Ignavibacterium album species 1 21 phylum 1090 1590 0 21 class Chlorobia 1590 0 191410 6 1 Chlorobiales order 20 1 14 191411 1584 0 1570 0 191412 11 1 19 family Chlorobiaceae 0 766 274493 no rank 8 176 0 1099 1 1 genus 3 Pelodictyon 0 47 1100 species 1 Pelodictyon luteolum Pelodictyon phaeoclathratiforme species 1 34090 0 128 0 590 1091 30 1 genus 5 Chlorobium 125 0 337090 1 species Chlorobium chlorochromatii 1096 269 0 Chlorobium phaeobacteroides species 1 Chlorobium phaeovibrioides 1 species 1094 0 50 Chlorobium limicola 1 species 1092 116 0 genus 1 100715 0 191 Chloroherpeton thalassium species 1 100716 191 0 Chlorobaculum 4 genus 1 36 256319 295 0 1097 63 0 Chlorobaculum tepidum species 1 274537 134 0 Chlorobaculum limnaeum 1 species 274539 62 0 Chlorobaculum parvum species 1 1 21 1101 307 0 Prosthecochloris 5 genus no rank 3 187 0 2632826 1868325 58 0 Prosthecochloris sp. CIB 2401 1 species 1974213 0 40 Prosthecochloris sp. HL-130-GSB 1 species 1 species Prosthecochloris sp. GSB1 89 0 281093 Prosthecochloris aestuarii species 1 1102 99 0 21 1 87861 0 976 313 phylum Bacteroidetes class 142 Flavobacteriia 47 1 0 64920 117743 55 1 0 64873 200644 order 141 Flavobacteriales Blattabacteriaceae family 10 1 4 39782 0 2834 1 26 34098 2830 0 Blattabacterium genus 9 1 species Blattabacterium punctulatus 384 0 164514 6 no rank 0 2028 2647581 367488 0 307 Blattabacterium sp. (Periplaneta americana) 1 species 0 281 39768 1 species Blattabacterium sp. (Mastotermes darwiniensis) species 1 Blattabacterium sp. (Blattella germanica) 0 382 624186 0 377 1316444 species 1 Blattabacterium sp. (Nauphoeta cinerea) 1186051 390 0 Blattabacterium sp. (Blaberus giganteus) 1 species 367806 0 291 Blattabacterium sp. (Blatta orientalis) species 1 1653831 392 0 Blattabacterium cuenoti species 1 780 0 313602 no rank 3 1940138 0 119 genus 1 Candidatus Walczuchella monophlebidarum 1 species 1415657 0 119 genus 2 Candidatus Sulcia 1 1 661 0 336809 0 660 336810 1 species Candidatus Sulcia muelleri family 1 Cryomorphaceae 6 0 246874 1853230 435 0 family 2 2 genus Fluviicola 1 1 435 0 332102 1 species Fluviicola taffensis 0 434 191579 2 family 364 0 1333713 364 0 267986 8 1 2 genus Owenweeksia 0 356 253245 species 1 Owenweeksia hongkongensis 100 family Flavobacteriaceae 53112 0 49546 240 1 1 genus 0 1005 261827 1736674 1005 0 Algibacter alginicilyticus species 1 Croceibacter 2 genus 216431 0 726 1 2 Croceibacter atlanticus species 1 313588 0 724 51 1 1595 0 76831 genus 5 Myroides 480520 368 0 Myroides profundi species 1 2642485 763 0 2 no rank Myroides sp. A21 1 species 1583100 374 0 1458492 0 389 Myroides sp. ZB35 species 1 Myroides odoratimimus 1 species 76832 0 413 1 genus 0 706 1209327 species 1 Flavivirga eckloniae 706 0 1803846 3 1 0 783 111500 genus 3 Muricauda Muricauda lutaonensis 1 species 516051 0 349 Muricauda ruestringensis 1 species 111501 431 0 326319 0 2280 1 6 Dokdonia 4 genus species 1 Dokdonia donghaensis 776 0 326320 2615033 1498 0 no rank 2 0 509 983548 1 species Dokdonia sp. 4H-3-7-5 0 989 313590 1 species Dokdonia sp. MED134 1 genus 393005 0 631 0 631 2069432 species 1 Tamlana sp. UJ94 358023 0 1244 1 genus 1622118 1244 0 Lutibacter profundi 1 species 0 875 336276 1 genus no rank 1 2615019 875 0 875 0 2058135 species 1 Olleya sp. Bg11-27 Flavobacterium genus 9 1 30 237 6191 0 Flavobacterium commune species 1 1306519 505 0 606 0 1492737 species 1 Flavobacterium gilvum Flavobacterium johnsoniae 1 species 986 1329 0 1270 0 996 1 species Flavobacterium columnare 441 0 1763534 1 species Flavobacterium crassostreae Flavobacterium branchiophilum 1 species 55197 538 0 889 0 312277 species 1 Flavobacterium indicum 0 583 96345 1 species Flavobacterium psychrophilum Lacinutrix genus 4 1 37 291183 0 3012 1986 0 2647285 no rank 2 2057808 959 0 Lacinutrix sp. Bg11-31 species 1 983544 1027 0 Lacinutrix sp. 5H-3-7-4 1 species Lacinutrix venerupis 1 species 1486034 0 989 genus 1 700 0 417127 species 1 Zunongwangia profunda 0 700 398743 1626 0 292691 6 1 genus 5 Gramella 1486245 0 234 Gramella flava species 1 0 568 411153 1 species Gramella forsetii Gramella sp. LPB0144 species 1 1913577 432 0 2126553 0 386 Gramella sp. SH35 1 species genus 2 Wenyingzhuangia 1 1 825 0 1518147 Wenyingzhuangia fucanilytica species 1 1790137 0 824 1 genus 0 148 252306 Robiginitalea biformata species 1 252307 0 148 5 genus Nonlabens 0 2309 363408 55 1 no rank 2 2615035 1100 0 496 0 2058134 species 1 Nonlabens sp. MB-3u-79 Nonlabens sp. MIC269 1 species 1476901 604 0 319236 635 0 Nonlabens sediminis 1 species Nonlabens dokdonensis species 1 328515 0 519 516 0 143222 1 genus 516 0 2633436 1 no rank 1729720 516 0 Salegentibacter sp. T436 species 1 153265 0 430 1 genus 0 430 101385 species 1 Aequorivita sublithincola 1 8 104267 0 3836 Tenacibaculum genus 5 species 1 Tenacibaculum todarodis 1104 0 1850252 1 species Tenacibaculum jejuense 1227 0 584609 species 1 Tenacibaculum maritimum 790 0 107401 669041 0 707 Tenacibaculum dicentrarchi 1 species 83612 0 610 genus 1 0 610 57029 species 1 Psychroflexus torquis Formosa genus 3 225842 0 1219 1 6 2 no rank 2644710 0 1213 Formosa sp. Hel1_33_131 species 1 1336794 0 531 Formosa sp. Hel3_A1_48 species 1 1336795 682 0 genus 1 0 296 112040 63186 0 296 Zobellia galactanivorans 1 species 452 0 178469 genus 1 1 species Arenibacter algicola 452 0 616991 13 1 0 2751 104264 genus 4 Cellulophaga 59600 863 0 Cellulophaga algicola species 1 species 1 Cellulophaga baltica 945 0 76594 species 1 Cellulophaga lytica 0 930 979 13 1 0 1915 286104 3 genus Winogradskyella no rank 2 2615021 1902 0 1064 0 754409 species 1 Winogradskyella sp. PG-2 Winogradskyella sp. J14-2 species 1 1936080 838 0 1029 0 1649495 genus 1 2622645 0 1029 1 no rank Seonamhaeicola sp. S2-3 1 species 1936081 0 1029 1 51 52959 0 5877 Polaribacter 6 genus 196858 0 3135 no rank 3 1152 0 313598 1 species Polaribacter sp. MED152 0 1071 1529069 species 1 Polaribacter sp. BM10 Polaribacter sp. ALD11 species 1 2058137 912 0 1300 0 1774273 1 species Polaribacter vadi 0 1391 996801 1 species Polaribacter reichenbachii 2 no rank 61432 0 986 531844 0 175 Flavobacteriaceae bacterium 3519-10 species 1 Flavobacteriaceae bacterium UJ101 1 species 1150389 811 0 0 276 1176327 genus 1 0 276 2636237 no rank 1 2094025 0 276 Aureitalea sp. RR4-38 species 1 genus 1 1249 0 2700084 Lutibacter sp. LPB0138 species 1 1850246 1249 0 genus 1 850 0 1204360 762954 0 850 Siansivirga zeaxanthinifaciens species 1 genus 1 373 0 389486 1 no rank 2648869 0 373 1453352 0 373 Sediminicola sp. YIK13 1 species 1 29 252356 2347 0 Maribacter genus 5 1178778 324 0 Maribacter cobaltidurans species 1 2615042 1994 0 no rank 3 1644130 700 0 Maribacter sp. 1_2014MBL_MicDiv 1 species Maribacter sp. T28 species 1 1836467 0 727 0 567 313603 species 1 Maribacter sp. HTCC2170 Capnocytophaga 15 genus 1016 3204 0 1 31 Capnocytophaga gingivalis 1 species 1017 0 147 0 154 327575 1 species Capnocytophaga leadbetteri 1 species Capnocytophaga haemolytica 0 132 45243 1018 0 141 Capnocytophaga ochracea species 1 1 species Capnocytophaga cynodegmi 0 318 28189 391 0 28188 1 species Capnocytophaga canimorsus 1 species Capnocytophaga sputigena 0 402 1019 283 0 1848904 species 1 Capnocytophaga stomatis 6 no rank 0 1205 2640652 0 243 1945658 species 1 Capnocytophaga sp. H4358 species 1 Capnocytophaga sp. H2931 263 0 1945657 1 species Capnocytophaga sp. oral taxon 864 0 168 1316593 1705617 0 140 Capnocytophaga sp. oral taxon 323 species 1 1 species Capnocytophaga sp. ChDC OS43 0 196 209053 0 195 1316596 1 species Capnocytophaga sp. oral taxon 878 family 21 0 6908 2762318 34084 551 0 1 genus Riemerella anatipestifer species 1 34085 0 551 Elizabethkingia genus 6 1 31 308865 2293 0 503 0 172045 species 1 Elizabethkingia miricola 1756150 0 283 Elizabethkingia genomosp. 4 1 species 1 species Elizabethkingia meningoseptica 0 330 238 species 1 Elizabethkingia anophelis 824 0 1117645 1756149 322 0 Elizabethkingia genomosp. 3 species 1 1013 0 313 1 1 Weeksella genus 2 1 species Weeksella virosa 0 312 1014 10 no rank 2782232 0 3504 1 genus 2782228 174 0 0 174 536441 species 1 Chryseobacterium taklimakanense 22 1 0 3330 59732 9 genus Chryseobacterium 0 1174 2593645 no rank 3 436 0 2015076 1 species Chryseobacterium sp. T16E-39 Chryseobacterium sp. StRB126 1 species 878220 0 374 364 0 1721091 species 1 Chryseobacterium sp. IHB B 17019 318 0 1324352 1 species Chryseobacterium gallinarum 1685010 583 0 Chryseobacterium glaciei 1 species 1 species Chryseobacterium camelliae 0 153 1265445 253 665 0 Chryseobacterium indologenes species 1 558152 0 415 Chryseobacterium piperi species 1 28250 0 247 1 3 Ornithobacterium 2 genus 28251 244 0 Ornithobacterium rhinotracheale 1 species 1 family 1755828 0 379 genus 1 0 379 1755829 0 379 242600 species 1 Ichthyobacterium seriolicida 0 9233 768503 4 1 class 58 Cytophagia order 57 Cytophagales 34 1 0 9229 768507 family 4 299 0 1501348 1 4 273135 136 0 Candidatus Cardinium 2 genus 2641185 0 132 1 no rank species 1 Cardinium endosymbiont of Encarsia pergandiella 0 132 249402 genus 2 Candidatus Amoebophilus 2 1 163 0 281119 Candidatus Amoebophilus asiaticus 1 species 281120 161 0 Cytophagaceae 15 family 89373 0 1717 1 3 107 622 0 1 1 Spirosoma genus 6 2057025 0 153 Spirosoma sp. HA7 species 1 Spirosoma montaniterrae 1 species 1178516 0 108 1 species Spirosoma radiotolerans 120 0 1379870 Spirosoma rigui 1 species 564064 104 0 136 0 1211326 1 species Spirosoma aerolatum 1 genus 120831 0 147 Dyadobacter fermentans 1 species 94254 0 147 274 0 105 2 1 genus 2 Runella 0 272 106 species 1 Runella slithyformis 1 9 978 390 0 Cytophaga genus 2 0 381 985 species 1 Cytophaga hutchinsonii genus 1 861914 60 0 0 60 2620963 1 no rank 1834519 0 60 Fibrella sp. ES10-3-2-2 1 species Leadbetterella genus 2 1 3 319458 221 0 species 1 Leadbetterella byssophila 218 0 316068 Bernardetiaceae 3 family 1937968 805 0 1 2 1937972 0 803 1 6 Bernardetia 2 genus species 1 Bernardetia litoralis 797 0 999 2762301 605 0 2 family 869806 605 0 1 3 Marivirga 2 genus Marivirga tractuosa species 1 1006 0 602 563798 1833 0 1 8 Cyclobacteriaceae family 10 246875 0 295 1 6 Algoriphagus 2 genus species 1 Algoriphagus sp. M8-2 0 289 1727163 1 3 68288 847 0 Cyclobacterium 3 genus Cyclobacterium marinum species 1 104 414 0 430 0 320787 1 species Cyclobacterium amurskyense 2 genus Echinicola 0 151 390846 3 1 390884 148 0 Echinicola vietnamensis species 1 genus 2 Belliella 8 1 532 0 232244 species 1 Belliella baltica 524 0 232259 1 7 1853232 1749 0 Hymenobacteraceae family 16 1 7 323449 348 0 Pontibacter genus 3 Pontibacter akesuensis 1 species 388950 128 0 400092 213 0 Pontibacter korlensis species 1 1 14 89966 948 0 Hymenobacter 8 genus 0 147 1411621 species 1 Hymenobacter sedentarius 1446467 0 124 Hymenobacter swuensis 1 species 0 663 2615202 no rank 5 0 102 1385664 1 species Hymenobacter sp. DG25B Hymenobacter sp. PAMC 26554 species 1 1484116 183 0 species 1 Hymenobacter sp. APR13 137 0 1356852 Hymenobacter sp. DG25A species 1 1385663 0 78 0 163 1484118 species 1 Hymenobacter sp. PAMC 26628 13 1 446 0 1379908 genus 4 Rufibacter 512763 0 184 Rufibacter tibetensis species 1 no rank 2 2639626 0 249 1 species Rufibacter sp. DG15C 111 0 1379909 Rufibacter sp. DG31D species 1 1379910 0 138 3 family 200667 0 1838 2 genus Flammeovirga 807 0 59739 3 1 1 no rank 0 804 2637820 species 1 Flammeovirga sp. MY04 0 804 1191459 340671 1031 0 no rank 1 Flammeovirgaceae bacterium 311 species 1 1257021 0 1031 0 349 1853234 4 1 3 family Persicobacteraceae 59740 0 345 1 3 Persicobacter genus 2 1 no rank 2664020 342 0 species 1 Persicobacter sp. JZB09 342 0 1085624 7 1 0 691 1100069 order 6 Bacteroidetes Order II. Incertae sedis 5 family Rhodothermaceae 684 0 563843 3 1 1196022 293 0 no rank 1 293 0 1779382 species 1 Rhodothermaceae bacterium RA 1 3 29548 216 0 Rhodothermus genus 2 0 213 29549 1 species Rhodothermus marinus 1 genus 146918 0 172 Salinibacter ruber 1 species 146919 172 0 0 5901 200643 17 1 class 62 Bacteroidia order 51 Bacteroidales 4624 0 171549 20 1 2 family 0 164 171550 1611681 0 67 genus 1 67 0 1433126 species 1 Mucinivorans hirudinis 1 genus 239759 97 0 0 97 214856 species 1 Alistipes finegoldii no rank 1 185291 0 128 1400053 128 0 Bacteroidales bacterium CF species 1 5 family 2005520 397 0 0 243 1784836 1 1 2 genus Fermentimonas 1562970 0 242 Fermentimonas caenicola 1 species 1 genus 307628 0 57 1 species Petrimonas mucosa 57 0 1642646 2 1 0 97 294702 2 genus Proteiniphilum Proteiniphilum saccharofermentans 1 species 1642647 95 0 family 1 2005523 243 0 genus 1 346096 243 0 185300 243 0 Paludibacter propionicigenes 1 species 0 159 1853231 family 1 genus 1 283168 159 0 159 0 28118 species 1 Odoribacter splanchnicus 815 0 1082 1 3 Bacteroidaceae 11 family 1 16 816 0 1079 Bacteroides 10 genus Bacteroides heparinolyticus 1 species 28113 0 83 817 0 239 Bacteroides fragilis 1 species 72 0 28119 species 1 Bacteroides zoogleoformans 0 139 818 1 species Bacteroides thetaiotaomicron Bacteroides helcogenes 1 species 290053 68 0 Bacteroides caecimuris species 1 1796613 101 0 47678 0 103 Bacteroides caccae species 1 246787 0 122 Bacteroides cellulosilyticus species 1 Bacteroides ovatus species 1 28116 0 136 2005525 366 0 family 6 3 genus Tannerella 168 0 195950 3 1 28112 85 0 Tannerella forsythia 1 species 80 0 2620507 no rank 1 80 0 712710 species 1 Tannerella sp. oral taxon HOT-286 genus 3 Parabacteroides 198 0 375288 2 1 823 97 0 Parabacteroides distasonis species 1 0 99 2649774 1 no rank 2025876 99 0 Parabacteroides sp. CT06 1 species 1 1 2005519 0 54 Barnesiellaceae 3 family 1 1 397864 53 0 Barnesiella genus 2 Barnesiella viscericola species 1 397865 0 52 Porphyromonadaceae family 4 171551 196 0 1 2 3 1 194 0 836 3 genus Porphyromonas 837 0 121 Porphyromonas gingivalis species 1 70 0 28123 1 species Porphyromonas asaccharolytica Prevotellaceae family 11 1 2 171552 0 899 0 897 838 13 1 10 genus Prevotella 589436 0 65 Prevotella fusca species 1 0 84 28132 1 species Prevotella melaninogenica Prevotella jejuni species 1 1177574 91 0 1 species Prevotella ruminicola 0 67 839 76123 0 69 Prevotella enoeca 1 species no rank 1 0 161 2638335 species 1 Prevotella sp. oral taxon 299 161 0 652716 64 0 52227 1 species Prevotella dentalis species 1 Prevotella denticola 36 0 28129 Prevotella intermedia 1 species 28131 0 247 no rank 5 333046 916 0 909656 0 458 genus 3 357276 0 153 Bacteroides dorei species 1 376805 154 0 Bacteroides salanitronis species 1 821 0 151 Bacteroides vulgatus species 1 genus 2 Candidatus Azobacteroides 1 1 458 0 511434 511435 0 457 Candidatus Azobacteroides pseudotrichonymphae species 1 1970189 0 1260 1 1 Marinilabiliales 10 order 2 family Salinivirgaceae 1 1 281 0 1970190 genus 1 1970191 0 280 0 280 1307839 1 species Salinivirga cyanobacteriivorans 1471398 241 0 1 2 Prolixibacteraceae 3 family 2 genus Draconibacterium 239 0 1471399 2 1 1168034 237 0 Draconibacterium orientale 1 species 1573805 0 468 family 1 2060722 468 0 genus 1 Marinifilaceae bacterium SPP2 1 species 1717717 468 0 Marinilabiliaceae family 3 558415 0 269 1 1 1193324 0 268 1 5 Alkalitalea 2 genus 889453 0 263 Alkalitalea saponilacus species 1 117747 5170 0 1 6 Sphingobacteriia 24 class 6 1 0 5164 200666 23 order Sphingobacteriales 84566 0 5158 1 20 Sphingobacteriaceae 22 family 84568 0 485 no rank 1 species 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 485 1986952 Solitalea genus 2 1 3 929509 0 479 476 0 995 1 species Solitalea canadensis 423349 627 0 1 3 Mucilaginibacter 4 genus 1234841 204 0 Mucilaginibacter sp. BJC16-A31 species 1 141 0 2617802 1 no rank Mucilaginibacter sp. PAMC 26640 species 1 1300914 141 0 1 species Mucilaginibacter gotjawali 0 279 1550579 Pedobacter genus 6 84567 1692 0 1 35 1 no rank 2628915 299 0 0 299 1727164 1 species Pedobacter sp. PACM 27299 430522 293 0 Pedobacter steynii 1 species 431 0 363852 species 1 Pedobacter ginsengisoli 0 354 188932 species 1 Pedobacter cryoconitis Pedobacter heparinus species 1 984 280 0 23 1 1376 0 28453 genus 6 Sphingobacterium no rank 4 2609468 0 1097 332 0 2003121 species 1 Sphingobacterium sp. G1-14 species 1 Sphingobacterium sp. 21 0 199 743722 1538644 276 0 Sphingobacterium sp. ML3W species 1 1933220 0 290 Sphingobacterium sp. B29 1 species 1 species Sphingobacterium mizutaii 256 0 1010 1 4 1649482 479 0 Pseudopedobacter genus 2 0 475 151895 species 1 Pseudopedobacter saltans 1 2 1853228 1494 0 Chitinophagia 17 class 5 1 1492 0 1853229 order 16 Chitinophagales 563835 1487 0 1 20 Chitinophagaceae 15 family 2 genus Flavisolibacter 1 1 256 0 398041 Flavisolibacter tropicus species 1 1492898 255 0 genus 2 Arachidicoccus 1 1 218 0 1769012 2636138 217 0 no rank 1 1850526 217 0 Arachidicoccus sp. BS20 1 species 174 0 649460 3 1 genus 2 Filimonas 1 species Filimonas lacunae 0 171 477680 genus 3 Chitinophaga 307 0 79328 1 1 154 0 79329 species 1 Chitinophaga pinensis 2029983 0 152 Chitinophagaceae bacterium 13 species 1 3 genus Niabella 5 1 282 0 379899 species 1 Niabella soli 0 139 446683 1 species Niabella ginsenosidivorans 138 0 1176587 1 1 0 230 354354 genus 2 Niastella 1 species Niastella koreensis 0 229 354356 3 class 1937959 431 0 order 3 1936988 431 0 1937961 273 0 1 family 0 273 2349 genus 1 Haliscomenobacter hydrossis 1 species 2350 0 273 family 2 0 158 89374 1 2 1007 0 158 Saprospira genus 2 1 species Saprospira grandis 0 156 1008 phylum 8 142182 0 632 7 1 632 0 219685 8 class Gemmatimonadetes 1 5 219686 625 0 Gemmatimonadales 7 order 219687 620 0 1 12 Gemmatimonadaceae family 6 Gemmatirosa 2 genus 1706036 0 357 1 2 861299 0 355 Gemmatirosa kalamazoonesis 1 species 1 5 173479 0 251 Gemmatimonas genus 3 173480 0 119 Gemmatimonas aurantiaca species 1 1 species Gemmatimonas phototrophica 127 0 1379270 108 0 200938 phylum 3 118001 0 108 class 3 3 order 189769 0 108 0 108 189770 3 1 family 3 Chrysiogenaceae 1 2 393029 105 0 Desulfurispirillum genus 2 936456 0 103 Desulfurispirillum indicum 1 species phylum 9 0 1087 200940 1087 0 67799 2 1 class 9 Thermodesulfobacteria 8 order Thermodesulfobacteriales 0 1085 188710 4 1 Thermodesulfobacteriaceae family 7 188711 0 1081 1 4 768 0 1740 1 1 genus 3 Thermodesulfobacterium 1295609 557 0 Thermodesulfobacterium geofontis 1 species Thermodesulfobacterium commune 1 species 1741 210 0 2 genus Caldimicrobium 1 1 0 147 444090 Caldimicrobium thiodismutans species 1 1653476 0 146 162 0 241192 1 genus 171695 0 162 Thermodesulfatator indicus species 1 phylum 57 203691 0 9476 class 57 Spirochaetia 30 1 9476 0 203692 Brachyspirales order 7 1643686 0 2441 1 4 Brachyspiraceae 6 family 143786 2437 0 1 1 2436 0 29521 16 1 5 genus Brachyspira 1 species Brachyspira intermedia 569 0 84377 Brachyspira hyodysenteriae 1 species 159 0 631 484 0 84378 1 species Brachyspira murdochii 52584 736 0 Brachyspira pilosicoli 1 species order 9 1643688 0 1351 1 12 170 1351 0 Leptospiraceae family 9 6 genus Leptospira 5 1 0 1253 171 252 0 172 species 1 Leptospira biflexa 173 0 572 Leptospira interrogans species 1 0 99 28183 1 species Leptospira santarosai Leptospira alstonii species 1 28452 134 0 174 191 0 Leptospira borgpetersenii 1 species 338321 86 0 1 1 Turneriella 2 genus 1 species Turneriella parva 85 0 29510 5654 0 136 11 1 40 order Spirochaetales 137 0 1699 1 7 Spirochaetaceae 22 family 1911556 0 113 1 genus Sediminispirochaeta smaragdinae 1 species 55206 113 0 genus 2 146 0 232 154 0 126 Spirochaeta thermophila 1 species 106 0 46355 species 1 Spirochaeta africana Treponema genus 12 157 946 0 1 7 1 species Treponema succinifaciens 151 0 167 150829 50 0 Treponema azotonutricium 1 species Treponema denticola species 1 158 92 0 82 0 88058 1 species Treponema primitia 2638727 0 48 1 no rank 48 0 1539298 1 species Treponema sp. OMZ 838 44 0 160 species 1 Treponema pallidum 1 species Treponema brennaborense 0 67 81028 0 134 409322 species 1 Treponema pedis 215591 0 128 Treponema caldarium 1 species 0 98 221027 species 1 Treponema putidum Treponema paraluiscuniculi 1 species 53435 45 0 2 genus Salinispira 198 0 1616789 1 1 1307761 197 0 Salinispira pacifica 1 species 203 0 399320 1 1 4 genus Sphaerochaeta 68 0 273376 1 species Sphaerochaeta coccoides 0 56 1131703 species 1 Sphaerochaeta globosa Sphaerochaeta pleomorpha 1 species 1131707 0 78 1643685 0 3944 1 13 Borreliaceae 17 family Borrelia genus 8 138 0 2276 1 71 Borrelia recurrentis species 1 44449 366 0 40834 0 506 Borrelia duttonii species 1 Borrelia parkeri 1 species 141 0 212 1 species Borrelia turicatae 0 221 142 species 1 Borrelia hermsii 0 182 140 Borrelia anserina 1 species 143 227 0 1 species Borrelia miyamotoi 491 0 47466 genus 8 Borreliella 1655 0 64895 114 1 1 species Borrelia mayonii 0 222 1674146 363 0 29519 species 1 Borreliella garinii species 1 Borreliella bissettii 202 0 64897 Borreliella valaisiana 1 species 62088 0 130 1 species Borreliella afzelii 265 0 29518 1 species Borreliella burgdorferi 0 205 139 Borreliella bavariensis species 1 664662 0 154 1 name 0 0