members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4865 17406 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 9701885 31 0 0 name 1 0 303 superkingdom 73908 2157 0 clade 64 21323 1783275 16871 Thaumarchaeota 651137 0 1 1 phylum 17 0 1 2 class 5 2011 Nitrososphaeria 1643678 0 1 order 1283 1968909 1283 1968910 0 1 family 1283 498374 0 genus 1 1 species 0 2045011 Candidatus Nitrosocaldus islandicus 1283 3 order 1 1 0 1033996 Nitrososphaerales 726 1033997 725 family 2 0 genus 1 2 1 0 497726 725 Nitrososphaera 724 Nitrososphaera viennensis 1034015 0 species 1 Nitrosopumilales 13176 31932 0 1 7 10 order family 5 6 1 0 338190 13166 Nitrosopumilaceae 338191 10247 Nitrosopumilus genus 4 3 1 0 0 species 1 6012 Candidatus Nitrosopumilus adriaticus 1580092 4231 Candidatus Nitrosopumilus sediminis 1229909 0 species 1 1 genus 2 0 1 1993653 2914 Candidatus Nitrosomarinus Candidatus Nitrosomarinus catalina 2913 1898749 0 1 species 0 no rank 4 1683 651142 3 genus 1 1 0 1825023 Candidatus Nitrosotenuis 660 305 Candidatus Nitrosotenuis sp. AQ6f 1846278 0 species 1 1603555 354 Candidatus Nitrosotenuis cloacae species 1 0 1593364 1023 1 genus 0 species 1 0 1410606 1023 Candidatus Nitrosopelagicus brevis 1 phylum 0 51967 76 0 genus 1 76 498845 species 1 0 498846 76 Candidatus Korarchaeum cryptofilum 4376 28889 0 phylum 46 183924 4376 Thermoprotei class 15 46 1 0 3 order 0 871006 409 48 871007 0 family 1 1 genus 0 105850 48 species 1 0 242703 48 Acidilobus saccharovorans 0 1 2 4 family Caldisphaeraceae 361 255472 200414 357 genus 1 0 0 1 species Caldisphaera lagunensis 357 200415 2208 2281 0 12 order 12 6 family 0 1 118883 Sulfolobaceae 2208 0 genus 1 385 69655 385 Sulfolobus tokodaii 111955 0 species 1 0 1 3 1 genus Metallosphaera 239 41980 1 species 0 43687 Metallosphaera sedula 93 145 Metallosphaera cuprina 1006005 0 species 1 1 0 genus 3 2 283 Acidianus 12914 0 1 species Acidianus hospitalis 280 563177 330 2100760 0 genus 1 2287 Sulfolobus solfataricus 330 1 species 0 4 genus 12 1 0 2284 Sulfolobus 965 1 species 0 2285 Sulfolobus acidocaldarius 161 2641160 315 1 no rank 0 1891280 315 Sulfolobus sp. A20 species 1 0 43080 Sulfolobus islandicus 477 1 species 0 1 0 order 3 14 810 Thermoproteales 2266 Thermofilaceae 279 114378 1 0 6 family 4 1 0 genus 5 5 275 Thermofilum 2268 76 Thermofilum adornatus 1365176 0 species 1 0 1 species Thermofilum pendens 64 2269 1 species 0 1483572 Thermofilum carboxyditrophus 74 0 species 1 56 Thermofilum uzonense 1550241 7 family 0 2267 528 76886 99 genus 1 0 Caldivirga maquilingensis 99 76887 0 1 species 191 164450 0 2 genus 0 species 1 88 Vulcanisaeta moutnovskia 985052 Vulcanisaeta distributa 103 164451 0 1 species 0 1 3 genus 3 165 Thermoproteus 2270 102 Thermoproteus uzoniensis 184117 0 species 1 2271 60 Thermoproteus tenax species 1 0 2276 73 1 genus 0 2277 73 Pyrobaculum islandicum species 1 0 Desulfurococcales 934 114380 1 0 16 order 2 700 2272 0 family 10 54253 34 genus 1 0 54254 Thermosphaera aggregans 34 1 species 0 477695 68 Thermogladius genus 4 2 1 0 1200300 64 Thermogladius calderae species 1 0 3 4 genus 0 1 2279 Staphylothermus 387 1 species 0 84599 Staphylothermus hellenicus 148 2280 235 Staphylothermus marinus species 1 0 113 2273 0 genus 2 0 species 1 82 Desulfurococcus amylolyticus 94694 2275 31 Desulfurococcus mucosus species 1 0 genus 2 0 54258 98 Ignicoccus islandicus 49 54259 0 1 species species 1 0 160233 49 Ignicoccus hospitalis 2307 Pyrodictiaceae 232 5 family 7 1 0 0 1 genus 64 54251 54252 Pyrolobus fumarii 64 1 species 0 0 1 1 genus 2 100 Hyperthermus 54247 Hyperthermus butylicus 99 54248 0 1 species 2308 61 1 genus 0 Pyrodictium delaneyi 61 1273541 0 1 species 0 1 clade 85 1783276 phylum 1 0 1801631 85 1 genus 0 2490204 85 Candidatus Micrarchaeota archaeon Mia14 85 1920749 0 1 species 52500 Euryarchaeota 28890 0 1 2 phylum 238 clade 24 0 2283796 3079 0 1 21 3 class Thermoplasmata 2701 183967 Methanomassiliicoccales 922 1235850 1 0 5 order 2 0 1 3 6 family Methanomassiliicoccaceae 729 1577788 0 1 genus 172 1607807 1577791 172 Candidatus Methanoplasma termitum species 1 0 genus 1 0 1080709 551 0 species 1 551 Candidatus Methanomassiliicoccus intestinalis 1406512 191 2517203 0 family 1 genus 1 0 1291539 191 0 species 1 191 Candidatus Methanomethylophilus alvus 1291540 1 0 order 3 14 1606 Thermoplasmatales 2301 4 1 family 0 1 46659 Thermoplasmataceae 269 2302 Thermoplasma 268 3 2 genus 0 1 1 species 0 2303 Thermoplasma acidophilum 105 0 species 1 161 Thermoplasma volcanium 50339 1919231 190 no rank 1 0 1054217 190 Thermoplasmatales archaeon BRNA1 species 1 0 246 46630 0 family 2 0 1 2 genus 2 246 Picrophilus 46631 Picrophilus torridus 244 82076 0 1 species 0 1 5 family 3 385 Cuniculiplasmataceae 1747776 1747777 Cuniculiplasma 380 2 12 genus 0 1 1673428 Cuniculiplasma divulgatum 368 1 species 0 90142 513 3 family 0 Ferroplasma 513 74968 0 1 3 6 genus 74969 241 Ferroplasma acidiphilum species 1 0 97393 Ferroplasma acidarmanus 266 1 species 0 0 1 no rank 170 1234666 1495144 170 methanogenic archaeon ISO4-H5 species 1 0 clade 3 0 1803510 378 Aciduliprofundum 378 379546 1 0 3 genus 3 2633939 164 no rank 1 0 0 1 species Aciduliprofundum sp. MAR08-339 164 673860 1 species 0 379547 Aciduliprofundum boonei 211 0 clade 118 30758 2290931 0 1 52 18 class Methanomicrobia 11457 224756 1943 Methanomicrobiales 2191 0 1 16 order 18 88404 148 2 family 0 148 Methanocorpusculum 2192 0 1 6 genus 2 species 1 0 83984 142 Methanocorpusculum labreanum 221 196137 0 2 family 2202 221 Methanospirillum genus 9 2 1 0 212 Methanospirillum hungatei 2203 0 species 1 2194 936 Methanomicrobiaceae family 7 7 1 0 1 0 genus 8 4 741 Methanoculleus 45989 0 species 1 250 Methanoculleus marisnigri 2198 83986 278 Methanoculleus bourgensis species 1 0 0 no rank 1 205 2619537 205 Methanoculleus sp. MAB1 86622 0 species 1 Methanolacinia 188 230355 1 0 2 genus 2 1 species 0 54120 Methanolacinia petrolearia 186 1198451 622 Methanoregulaceae 10 family 6 0 1 350 Methanoregula 395331 1 0 genus 6 3 1 species 0 882104 Methanoregula formicica 135 0 1 species Methanoregula boonei 209 358766 1 0 2 genus 1 Methanosphaerula 262 475087 species 1 0 475088 261 Methanosphaerula palustris 9014 Methanosarcinales 94695 1 0 order 15 28 1 0 family 2 4 535 Methanosaetaceae 143067 533 Methanothrix 2222 0 1 10 genus 3 species 1 0 2223 254 Methanothrix soehngenii 0 1 species Methanosaeta harundinacea 269 301375 13 family 23 0 1 2206 8464 Methanosarcinaceae genus 2 0 2175 474 species 1 0 2176 246 Methanohalophilus mahii 2177 Methanohalophilus halophilus 228 1 species 0 0 1 11 genus 13 6047 Methanosarcina 2207 2215 Methanosarcina vacuolata 377 1 species 0 0 1 species Methanosarcina mazei 822 2209 334 Methanosarcina lacustris 170861 0 species 1 0 1 species Methanosarcina acetivorans 354 2214 0 species 1 305 Methanosarcina horonobensis 418008 0 1 species Methanosarcina thermophila 261 2210 0 4 no rank 1320 2644672 0 1 species Methanosarcina sp. WWM596 286 1434103 1434102 261 Methanosarcina sp. WH1 species 1 0 0 1 species Methanosarcina sp. MTP4 422 1434100 Methanosarcina sp. Kolksee 351 1434099 0 1 species 0 species 1 1421 Methanosarcina barkeri 2208 38027 Methanosarcina siciliae 842 1 species 0 0 1 genus 196 2220 Methanolobus psychrophilus 196 420950 0 1 species 196136 324 1 genus 0 Methanosalsum zhilinae 324 39669 0 1 species 632 2225 0 2 genus 29291 Methanococcoides burtonii 289 1 species 0 2226 Methanococcoides methylutens 343 1 species 0 2321 546 genus 1 0 0 1 species Methanohalobium evestigatum 546 2322 Methanomethylovorans 232 101191 1 0 2 genus 4 species 1 0 101192 228 Methanomethylovorans hollandica 0 1 5 1 order Methanocellales 482 570264 Methanocellaceae 481 570265 1 0 4 family 3 3 genus 10 1 0 570266 Methanocella 478 1 species 0 1175445 Methanocella arvoryzae 323 0 species 1 145 Methanocella conradii 1175444 1 0 66 class 55 Halobacteria 19301 183963 26 order 30 1 0 2235 Halobacteriales 4836 1814 Halobacteriaceae 2236 1 0 family 16 9 1980514 142 1 genus 0 Halodesulfurarchaeum formicicum 142 1873524 0 1 species 179 1656823 0 genus 1 species 1 0 1604004 179 Halanaeroarchaeum sulfurireducens 2239 1179 Halobacterium genus 15 4 1 0 species 1 0 1407499 477 Halobacterium hubeiense 1 no rank 0 2668073 404 species 1 0 751944 404 Halobacterium sp. DL1 2242 283 Halobacterium salinarum species 1 0 0 1 2 1 genus Halalkalicoccus 298 332246 species 1 0 413810 297 Halalkalicoccus jeotgali 16 13 family 0 1 1963268 Haloarculaceae 2992 3 genus 1 1 0 63743 Natronomonas 550 1 species 0 416273 Natronomonas moolapensis 296 Natronomonas pharaonis 253 2257 0 1 species 7 genus 2 0 1 203135 402 Halomicrobium species 1 0 57705 395 Halomicrobium mukohataei 1 0 3 genus 11 Halorhabdus 502 146825 0 1 species Halorhabdus tiamatea 243 430914 1 species 0 146826 Halorhabdus utahensis 248 20 genus 5 0 1 2237 1132 Haloarcula species 1 0 51589 296 Haloarcula hispanica 0 1 species Haloarcula taiwanensis 253 1932004 0 1 no rank 278 2624677 species 1 0 1592728 278 Haloarcula sp. CBA1115 species 1 0 2238 285 Haloarcula marismortui 0 1 2 genus 2 393 Halorientalis 1073987 1 no rank 0 2648975 391 0 1 species Halorientalis sp. IM1011 391 1932360 62 order 19 0 1 1644055 6970 Haloferacales 1963271 1843 Halorubraceae family 4 8 1 0 850 Halorubrum 56688 1 0 genus 7 3 29284 460 Halorubrum trapanicum species 1 0 0 species 1 383 Halorubrum lacusprofundi 2247 Salinigranum 598 1644057 0 1 2 1 genus 1 species 0 755307 Salinigranum rubrum 597 391 Halopenitus 1209988 1 0 genus 3 2 0 species 1 388 Halopenitus persicus 1048396 2678336 316 1 no rank 0 1 species 0 756883 halophilic archaeon DL31 316 20 family 9 0 1 1644056 4749 Haloferacaceae 2251 1657 Haloferax genus 17 4 1 0 35746 675 Haloferax gibbonsii species 1 0 0 1 species Haloferax mediterranei 339 2252 Haloferax volcanii 626 2246 0 1 species 0 1 5 genus 2 2794 Haloquadratum 293431 293091 Haloquadratum walsbyi 2789 1 species 0 60846 Halogeometricum 278 2 genus 2 1 0 1 species 0 60847 Halogeometricum borinquense 276 1 0 order 37 20 7440 Natrialbales 1644060 0 1 50 family 19 7403 Natrialbaceae 1644061 203193 691 genus 1 0 0 species 1 691 Halobiforma lacisalsi 229731 3 6 genus 0 1 88723 Natrinema 836 no rank 1 0 2622230 334 species 1 0 406552 334 Natrinema sp. J7-2 69525 Natrinema pellirubrum 496 1 species 0 genus 4 2 1 0 63742 2448 Natrialba Natrialba magadii 2444 13769 0 1 species 1218 Haloterrigena 121871 1 0 genus 8 3 617 Haloterrigena daqingensis 588898 0 species 1 0 1 species Haloterrigena turkmenica 593 62320 1 genus 0 29287 531 29288 Natronococcus occultus 531 1 species 0 0 1 2 genus 2 556 Halopiger 387342 387343 Halopiger xanaduensis 554 1 species 0 1269201 435 Salinarchaeum 1 genus 2 0 1 434 2621923 0 1 no rank Salinarchaeum sp. Harcht-Bsk1 434 1333523 0 1 species 2 genus 2 0 1 353799 289 Halostagnicola 0 species 1 287 Halostagnicola larsenii 353800 Natronobacterium 349 2256 1 0 2 genus 5 species 1 0 44930 344 Natronobacterium gregoryi 1 0 41 class 1 Thermococci 4759 183968 2258 4758 Thermococcales 11 order 40 0 1 39 1 family 0 1 2259 Thermococcaceae 4747 Pyrococcus 691 2260 1 0 8 genus 9 2261 146 Pyrococcus furiosus species 1 0 Pyrococcus abyssi 85 29292 0 1 species species 1 0 53953 86 Pyrococcus horikoshii 0 species 1 48 Pyrococcus yayanosii 1008460 241 2629106 0 no rank 2 species 1 0 342949 113 Pyrococcus sp. NA2 species 1 0 1183377 128 Pyrococcus sp. ST04 76 Pyrococcus kukulkanii 1609559 0 species 1 123 83867 0 genus 1 Palaeococcus pacificus 123 971279 0 1 species 29 28 genus 0 1 2263 Thermococcus 3932 Thermococcus nautili 75 195522 0 1 species species 1 0 163003 64 Thermococcus cleftensis 1 species 0 54262 Thermococcus chitonophagus 100 117 Thermococcus litoralis 2265 0 species 1 0 species 1 62 Thermococcus pacificus 71998 Thermococcus piezophilus 65 1712654 0 1 species 0 species 1 1551 Thermococcus siculi 72803 1505907 Thermococcus eurythermalis 65 1 species 0 species 1 0 49899 77 Thermococcus profundus 1 species 0 582419 Thermococcus paralvinellae 164 187880 80 Thermococcus radiotolerans species 1 0 Thermococcus celer 77 2264 0 1 species Thermococcus gammatolerans 91 187878 0 1 species 76 Thermococcus onnurineus 342948 0 species 1 0 species 1 77 Thermococcus barossii 54077 species 1 0 172049 194 Thermococcus sibiricus Thermococcus thioreducens 71 277988 0 1 species 0 1 species Thermococcus peptonophilus 44 53952 0 species 1 46 Thermococcus gorgonarius 71997 191 Thermococcus barophilus 55802 0 species 1 2627626 464 6 no rank 0 species 1 0 1674923 93 Thermococcus sp. 2319x1 Thermococcus sp. AM4 85 246969 0 1 species 53 Thermococcus sp. P6 122420 0 species 1 88 Thermococcus sp. 4557 1042877 0 species 1 2016361 81 Thermococcus sp. EXT12c species 1 0 species 1 0 2008440 64 Thermococcus sp. 5-4 0 1 species Thermococcus guaymasensis 69 110164 0 species 1 84 Thermococcus kodakarensis 311400 0 44 clade 12994 2283794 6351 Methanobacteria 183925 1 0 class 5 26 0 1 25 3 order Methanobacteriales 6346 2158 0 1 6 family 23 5936 Methanobacteriaceae 2159 2160 1864 Methanobacterium 20 genus 8 0 1 Methanobacterium congolense 235 118062 0 1 species 868131 351 Methanobacterium paludis species 1 0 0 species 1 407 Methanobacterium lacus 877455 395 2627676 0 no rank 2 1379702 Methanobacterium sp. MB1 200 1 species 0 1911685 195 Methanobacterium sp. MZ-A1 species 1 0 59277 Methanobacterium subterraneum 199 1 species 0 species 1 0 2162 257 Methanobacterium formicicum 145260 409 Methanothermobacter 8 genus 5 0 1 80 Methanothermobacter thermautotrophicus 145262 0 species 1 0 species 1 88 Methanothermobacter wolfeii 145261 no rank 1 0 2631116 102 1 species 0 866790 Methanothermobacter sp. CaT2 102 131 Methanothermobacter marburgensis 145263 0 species 1 2172 Methanobrevibacter 3065 7 genus 6 1 0 Methanobrevibacter olleyae 708 294671 0 1 species 230361 521 Methanobrevibacter millerae species 1 0 2638681 774 no rank 2 0 1 species 0 224719 Methanobrevibacter sp. AbM4 409 Methanobrevibacter sp. YE315 365 1609968 0 1 species 0 species 1 402 Methanobrevibacter ruminantium 83816 654 Methanobrevibacter smithii 2173 0 species 1 1 0 genus 3 2 592 Methanosphaera 2316 2317 589 Methanosphaera stadtmanae species 1 0 family 1 0 2178 407 0 1 genus 407 2179 0 species 1 407 Methanothermus fervidus 2180 1 0 class 2 18 6643 Methanococci 183939 2182 6641 Methanococcales order 9 17 1 0 196117 Methanocaldococcaceae 2849 9 family 2 1 0 196118 Methanocaldococcus 2466 7 23 genus 0 1 67760 298 Methanocaldococcus infernus species 1 0 1 species 0 73913 Methanocaldococcus vulcanius 433 83171 439 Methanocaldococcus fervens species 1 0 Methanocaldococcus jannaschii 430 2190 0 1 species 445 Methanocaldococcus bathoardescens 1301915 0 species 1 0 1 no rank 398 2641196 0 species 1 398 Methanocaldococcus sp. FS406-22 644281 0 genus 1 381 196119 2189 Methanotorris igneus 381 1 species 0 2 family 7 0 1 2183 3783 Methanococcaceae 155862 395 1 genus 0 species 1 0 155863 395 Methanothermococcus okinawensis 0 1 4 genus 5 3386 Methanococcus 2184 2188 733 Methanococcus voltae species 1 0 1 species 0 2187 Methanococcus vannielii 408 1 species 0 42879 Methanococcus aeolicus 433 Methanococcus maripaludis 1808 39152 0 1 species 183980 908 class 10 0 908 Archaeoglobales 2231 1 0 order 2 10 1 family 9 0 1 2232 906 Archaeoglobaceae genus 8 5 1 0 2233 581 Archaeoglobus 58290 117 Archaeoglobus veneficus species 1 0 Archaeoglobus fulgidus 146 2234 0 1 species 0 1 species Archaeoglobus profundus 153 84156 0 1 species Archaeoglobus sulfaticallidus 157 1316941 0 1 genus 151 54260 54261 Ferroglobus placidus 151 1 species 0 genus 2 0 190818 173 77 Geoglobus acetivorans 565033 0 species 1 species 1 0 113653 96 Geoglobus ahangari Bacteria 9610571 2 0 1 4530 57 superkingdom 200940 3250 phylum 10 0 class 2 10 1 0 67799 3250 Thermodesulfobacteria 188710 3248 Thermodesulfobacteriales order 8 9 1 0 188711 Thermodesulfobacteriaceae 3240 8 family 18 1 0 Caldimicrobium 916 444090 1 0 2 genus 1 1653476 915 Caldimicrobium thiodismutans species 1 0 Thermodesulfobacterium 1807 1740 1 0 3 genus 5 Thermodesulfobacterium geofontis 1265 1295609 0 1 species species 1 0 1741 537 Thermodesulfobacterium commune 499 Thermodesulfatator 241192 0 1 5 genus 2 171695 Thermodesulfatator indicus 494 1 species 0 269 2138240 0 3 phylum 1 0 3 class 1 Coprothermobacteria 269 2138243 268 Coprothermobacterales 2138246 1 0 order 2 2 2138247 266 1 family 0 0 genus 1 266 68335 0 species 1 266 Coprothermobacter proteolyticus 35786 1930617 1860 5 phylum 0 2 class 5 0 1 1962850 1860 Calditrichae 1962852 Calditrichales 1858 4 6 order 0 1 1852 Calditrichaceae 1962854 1 0 family 9 3 2 6 genus 0 1 187144 Caldithrix 1843 1 species 0 187145 Caldithrix abyssi 1837 5574 57723 0 20 phylum Acidobacteriia 4984 204432 1 0 17 class 23 332160 1367 Solibacterales order 15 4 1 0 1352 Solibacteraceae 332161 0 1 10 family 3 332162 1342 Candidatus Solibacter genus 17 2 1 0 1 species 0 332163 Candidatus Solibacter usitatus 1325 Acidobacteriales 3594 204433 0 1 12 43 order 204434 Acidobacteriaceae 3551 11 family 37 1 0 0 1 9 genus 3 1169 Granulicella 940557 Granulicella mallensis 558 940614 0 1 species 940615 602 Granulicella tundricola species 1 0 genus 6 3 1 0 392733 1005 Terriglobus 1 species 0 870903 Terriglobus saanensis 530 species 1 0 392734 469 Terriglobus roseus 5 genus 2 0 1 658061 666 Candidatus Koribacter 1 species 0 658062 Candidatus Koribacter versatilis 661 674 Acidobacterium 33973 1 0 genus 2 2 33075 672 Acidobacterium capsulatum species 1 0 Blastocatellia 590 1562566 1 0 3 class 6 0 1 2 7 genus Chloracidobacterium 584 458032 Chloracidobacterium thermophilum 577 458033 0 1 species 0 24 phylum 31318 32066 Fusobacteriia 31318 203490 0 1 24 29 class 31289 Fusobacteriales 203491 1 0 order 43 23 24093 Fusobacteriaceae 203492 1 0 family 21 11 909 167639 0 genus 1 0 1 species Ilyobacter polytropus 909 167642 848 23163 Fusobacterium genus 79 9 1 0 851 9168 Fusobacterium nucleatum species 1 0 0 1 species Fusobacterium periodonticum 4415 860 856 Fusobacterium varium 2874 1 species 0 Fusobacterium ulcerans 1444 861 0 1 species 0 species 1 2501 Fusobacterium hwasookii 1583098 Fusobacterium gonidiaformans 812 849 0 1 species 1 species 0 850 Fusobacterium mortiferum 1290 0 species 1 580 Fusobacterium necrophorum 859 1 0 11 family 13 Leptotrichiaceae 7153 1129771 32067 4028 Leptotrichia 15 genus 5 0 1 40542 Leptotrichia buccalis 1071 1 species 0 2633022 2942 3 no rank 0 712357 942 Leptotrichia sp. oral taxon 212 species 1 0 1 species 0 712368 Leptotrichia sp. oral taxon 498 981 species 1 0 1785996 1019 Leptotrichia sp. oral taxon 847 2 genus 2 1 0 32068 Sebaldella 925 0 1 species Sebaldella termitidis 923 826 genus 1 0 168808 902 0 species 1 902 Sneathia amnii 187101 genus 1 2 1 0 34104 1285 Streptobacillus 0 1 species Streptobacillus moniliformis 1284 34105 2323 937 no rank 3 0 937 1783234 0 3 clade 95818 157 1 phylum 0 0 1 no rank 157 1895827 1 species 0 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 157 95901 780 clade 2 0 0 2 class 780 2497643 order 2 0 2497644 780 2 family 0 2497645 780 genus 6 2 1 0 1551504 780 Candidatus Babela 673862 774 Candidatus Babela massiliensis species 1 0 200930 4013 10 phylum 0 10 class 9 1 0 68337 Deferribacteres 4013 14 order 9 0 1 191393 4004 Deferribacterales 1 0 8 family 33 Deferribacteraceae 3990 191394 2351 Flexistipes 876 2 genus 6 1 0 2352 Flexistipes sinusarabici 870 1 species 0 1 0 2 genus 4 Deferribacter 1727 53572 197162 Deferribacter desulfuricans 1723 1 species 0 2 genus 8 1 0 117999 Denitrovibrio 578 118000 Denitrovibrio acetiphilus 570 1 species 0 776 545865 0 1 genus 0 species 1 776 Calditerrivibrio nitroreducens 477976 1783257 36538 101 clade 0 0 1 10 phylum 30 7835 Verrucomicrobia 74201 3 class 2 1 0 134549 Spartobacteria 176 Candidatus Xiphinematobacter 174 134550 0 1 2 9 genus 165 2648876 0 1 no rank 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 165 1 species 0 417295 1408 no rank 2 0 0 species 1 835 Verrucomicrobia bacterium 2026799 0 1 species Verrucomicrobia bacterium IMCC26134 573 1637999 6 4 class 0 1 203494 Verrucomicrobiae 914 Verrucomicrobiales 910 48461 0 1 5 9 order 4 10 family 0 1 1647988 Akkermansiaceae 901 3 genus 16 1 0 239934 Akkermansia 891 0 species 1 446 Akkermansia glycaniphila 1679444 239935 429 Akkermansia muciniphila species 1 0 0 1 12 22 class Opitutae 4528 414999 3443 Opitutales 415000 0 1 37 order 7 3406 Opitutaceae 134623 1 0 family 27 6 278955 1206 1 no rank 0 1 species 0 794903 Opitutaceae bacterium TAV5 1206 1153 Opitutus 178440 1 0 genus 8 2 0 1 species Opitutus terrae 1145 107709 10 genus 2 0 1 1961799 1020 Lacunisphaera 0 1 species Lacunisphaera limnophila 1010 1838286 4 3 order 0 1 415001 Puniceicoccales 1063 0 1 2 family 3 1060 Puniceicoccaceae 415002 0 1 2 6 genus Coraliomargarita 1058 442430 0 1 species Coraliomargarita akajimensis 1052 395922 1 0 6 class 2 Methylacidiphilae 799 1955630 717963 797 Methylacidiphilales order 4 5 1 0 793 Methylacidiphilaceae 717964 0 1 2 family 4 511745 Methylacidiphilum 791 3 7 genus 0 1 0 species 1 506 Methylacidiphilum fumariolicum 591154 1 species 0 511746 Methylacidiphilum infernorum 278 778 256845 0 3 phylum 0 1 8 class 3 778 Lentisphaeria 1313211 278082 Victivallales 770 2 order 13 1 0 1 no rank 0 1674876 757 2094242 757 Victivallales bacterium CCUG 44730 species 1 0 0 phylum 24 4922 204428 204429 4922 Chlamydiia 15 class 24 0 1 14 13 order 0 1 51291 Chlamydiales 3212 1 0 family 11 13 3199 Chlamydiaceae 809 1113537 3188 12 no rank 0 810 Chlamydia 3188 12 67 genus 0 1 0 1 species Chlamydia caviae 307 83557 1 species 0 83556 Chlamydia felis 305 0 species 1 260 Chlamydia abortus 83555 244 Chlamydia trachomatis 813 0 species 1 1 species 0 83554 Chlamydia psittaci 325 1 species 0 83558 Chlamydia pneumoniae 353 species 1 0 85991 369 Chlamydia pecorum 83560 Chlamydia muridarum 243 1 species 0 0 1 species Chlamydia gallinacea 224 1457153 Chlamydia suis 182 83559 0 1 species 1457141 309 Chlamydia avium species 1 0 0 1 9 8 order Parachlamydiales 1695 1963360 0 1 6 family 5 941 Parachlamydiaceae 92713 400 Candidatus Protochlamydia 282132 1 0 genus 2 2 Candidatus Protochlamydia naegleriophila 398 389348 0 1 species 83551 Parachlamydia 535 2 3 genus 0 1 Parachlamydia acanthamoebae 532 83552 0 1 species family 1 0 92712 388 388 34093 0 genus 1 83561 388 Simkania negevensis species 1 0 358 92714 0 2 family 71666 358 Waddlia 5 genus 2 0 1 Waddlia chondrophila 353 71667 0 1 species 22213 203682 0 phylum 39 Planctomycetia 17649 203683 0 1 28 46 class 1 0 order 135 11 8114 Planctomycetales 112 10 46 family 0 1 126 Planctomycetaceae 7979 671 Planctopirus 1649480 1 0 genus 4 2 Planctopirus limnophila 667 120 0 1 species 1936111 1735 Fuerstia 3 genus 2 0 1 Fuerstia marisgermanicae 1732 1891926 0 1 species Rubinisphaera 1431 1649490 0 1 2 9 genus 0 species 1 1422 Rubinisphaera brasiliensis 119 Planctomyces 4096 118 1 0 3 genus 34 0 no rank 2 4062 2648843 1632864 2114 Planctomyces sp. SH-PL14 species 1 0 species 1 0 1636152 1948 Planctomyces sp. SH-PL62 1630 2691355 0 order 3 5 family 3 0 1 1914233 1630 Gemmataceae 1625 Gemmata 113 0 1 29 genus 2 no rank 1 0 2622970 1596 1 species 0 1630693 Gemmata sp. SH-PL17 1596 4423 2691356 0 order 7 1763524 4423 Isosphaeraceae 29 family 7 0 1 127 909 Isosphaera 22 genus 2 0 1 128 Isosphaera pallida 887 1 species 0 1437 Singulisphaera 466152 0 1 15 genus 2 466153 1422 Singulisphaera acidiphila species 1 0 0 1 2 6 genus Paludisphaera 2048 1763521 1387353 2042 Paludisphaera borealis species 1 0 3436 2691354 0 order 6 0 2 family 566 2691358 2 1 genus 0 1 1676125 Thermogutta 566 565 Thermogutta terrifontis 1331910 0 species 1 0 4 family 2870 2691357 1305 Pirellula 123 1 0 genus 3 2 125 1302 Pirellula staleyi species 1 0 265488 1565 Rhodopirellula 7 genus 2 0 1 1 species 0 265606 Rhodopirellula baltica 1558 4 class 0 2517206 1973 1 0 4 order 3 Candidatus Brocadiales 1973 1127829 1127830 1970 Candidatus Brocadiaceae 1 family 3 0 1 1969 Candidatus Kuenenia 380738 1 0 genus 3 2 0 species 1 1966 Candidatus Kuenenia stuttgartiensis 174633 4 class 7 0 1 666505 2591 Phycisphaerae 912 2483366 0 2 order 0 family 2 912 2483367 912 2483368 0 2 genus 1 species 0 1941349 Phycisphaerae bacterium ST-PulAB-D4 448 464 Phycisphaerae bacterium L21-RPul-D3 1940790 0 species 1 Phycisphaerales 1675 666506 1 0 4 order 19 Phycisphaeraceae 1656 666507 0 1 3 10 family 10 genus 2 0 1 666508 1646 Phycisphaera 547188 1636 Phycisphaera mikurensis species 1 0 0 phylum 5 790 134625 5 class 6 1 0 1921781 Kiritimatiellae 790 784 Kiritimatiellales 1921782 1 0 order 2 4 3 family 3 1 0 1921783 Kiritimatiellaceae 782 1921784 779 Kiritimatiella genus 8 2 1 0 Kiritimatiella glycovorans 771 1307763 0 1 species 0 phylum 5 484 200938 484 Chrysiogenetes 118001 0 1 4 class 5 480 Chrysiogenales 189769 1 0 order 11 4 189770 469 Chrysiogenaceae family 1 3 1 0 0 1 6 genus 2 468 Desulfurispirillum 393029 936456 462 Desulfurispirillum indicum species 1 0 0 phylum 58 25766 203691 0 1 68 class 58 25766 Spirochaetia 203692 Brachyspirales 5693 1643686 0 1 7 11 order 0 1 6 6 family Brachyspiraceae 5682 143786 Brachyspira 5676 29521 1 0 5 genus 38 84377 Brachyspira intermedia 1309 1 species 0 159 Brachyspira hyodysenteriae 1412 1 species 0 species 1 0 84378 1176 Brachyspira murdochii 0 1 species Brachyspira pilosicoli 1741 52584 Spirochaetales 15790 136 1 0 41 order 48 0 1 23 33 family Spirochaetaceae 6389 137 Treponema 3503 157 1 0 12 genus 25 150829 Treponema azotonutricium 282 1 species 0 0 species 1 424 Treponema succinifaciens 167 160 100 Treponema pallidum species 1 0 1 no rank 0 2638727 258 1 species 0 1539298 Treponema sp. OMZ 838 258 0 1 species Treponema pedis 393 409322 446 Treponema putidum 221027 0 species 1 372 Treponema caldarium 215591 0 species 1 Treponema brennaborense 264 81028 0 1 species 1 species 0 88058 Treponema primitia 473 Treponema denticola 339 158 0 1 species 53435 127 Treponema paraluiscuniculi species 1 0 1616789 820 genus 1 0 1307761 Salinispira pacifica 820 1 species 0 Sediminispirochaeta 447 1911556 0 1 2 2 genus 445 Sediminispirochaeta smaragdinae 55206 0 species 1 0 1 6 genus 3 963 Spirochaeta 146 46355 408 Spirochaeta africana species 1 0 0 1 species Spirochaeta thermophila 549 154 Sphaerochaeta 623 399320 0 1 4 2 genus Sphaerochaeta globosa 195 1131703 0 1 species 0 species 1 213 Sphaerochaeta pleomorpha 1131707 species 1 0 273376 213 Sphaerochaeta coccoides 1 0 family 19 17 9353 Borreliaceae 1643685 138 5335 Borrelia genus 103 8 1 0 Borrelia recurrentis 702 44449 0 1 species Borrelia parkeri 520 141 0 1 species 0 species 1 1035 Borrelia miyamotoi 47466 140 597 Borrelia hermsii species 1 0 0 1 species Borrelia turicatae 545 142 0 1 species Borrelia anserina 507 143 40834 Borrelia duttonii 1326 1 species 0 Borreliella 3999 64895 0 1 8 197 genus Borrelia mayonii 488 1674146 0 1 species 1 species 0 664662 Borreliella bavariensis 400 1 species 0 29518 Borreliella afzelii 538 0 1 species Borreliella burgdorferi 575 139 0 species 1 885 Borreliella garinii 29519 species 1 0 64897 499 Borreliella bissettii 0 species 1 417 Borreliella valaisiana 62088 9 order 0 1643688 4215 0 1 26 family 9 4215 Leptospiraceae 170 1 0 6 genus 27 Leptospira 3777 171 species 1 0 28183 401 Leptospira santarosai 1431 Leptospira interrogans 173 0 species 1 1 species 0 172 Leptospira biflexa 678 174 757 Leptospira borgpetersenii species 1 0 483 Leptospira alstonii 28452 0 species 1 Turneriella 412 338321 1 0 2 genus 1 411 Turneriella parva 29510 0 species 1 0 clade 387 280369 1783270 647 456828 0 2 phylum 0 1 2 9 genus Candidatus Cloacimonas 647 456826 456827 Candidatus Cloacimonas acidaminovorans 638 1 species 0 142182 3642 phylum 8 0 3642 Gemmatimonadetes 219685 1 0 class 18 8 7 51 order 0 1 219686 Gemmatimonadales 3624 1 0 family 27 6 3573 Gemmatimonadaceae 219687 1481 Gemmatimonas 173479 1 0 genus 10 3 0 1 species Gemmatimonas aurantiaca 770 173480 Gemmatimonas phototrophica 701 1379270 0 1 species 6 genus 2 0 1 1706036 2065 Gemmatirosa species 1 0 861299 2059 Gemmatirosa kalamazoonesis 68336 275516 373 clade 0 phylum 8 0 1134404 2932 8 class 12 1 0 795747 Ignavibacteria 2932 795748 2920 Ignavibacteriales 16 order 7 0 1 795749 Ignavibacteriaceae 2094 3 1 family 0 1 2093 Ignavibacterium 795750 0 1 6 genus 2 0 species 1 2087 Ignavibacterium album 591197 3 family 1 1 0 1334117 Melioribacteraceae 810 1134403 809 Melioribacter 2 genus 2 0 1 species 1 0 1134405 807 Melioribacter roseus 6624 1090 0 phylum 22 191410 6624 Chlorobia 30 class 22 0 1 21 58 order 0 1 191411 Chlorobiales 6594 family 63 20 1 0 191412 6536 Chlorobiaceae 274493 2926 no rank 8 0 Chlorobium 2194 1091 0 1 5 42 genus 337090 452 Chlorobium chlorochromatii species 1 0 1092 457 Chlorobium limicola species 1 0 Chlorobium phaeovibrioides 266 1094 0 1 species 1 species 0 1096 Chlorobium phaeobacteroides 977 9 genus 3 0 1 1099 732 Pelodictyon 0 1 species Pelodictyon phaeoclathratiforme 407 34090 species 1 0 1100 316 Pelodictyon luteolum 256319 Chlorobaculum 1422 4 genus 63 1 0 434 Chlorobaculum parvum 274539 0 species 1 0 species 1 537 Chlorobaculum limnaeum 274537 1097 Chlorobaculum tepidum 388 1 species 0 100715 Chloroherpeton 741 2 2 genus 0 1 739 Chloroherpeton thalassium 100716 0 species 1 Prosthecochloris 1384 1101 0 1 5 49 genus 1102 301 Prosthecochloris aestuarii species 1 0 2632826 1034 3 no rank 0 281093 Prosthecochloris sp. GSB1 365 1 species 0 0 species 1 331 Prosthecochloris sp. CIB 2401 1868325 1 species 0 1974213 Prosthecochloris sp. HL-130-GSB 338 976 Bacteroidetes 265960 343 25 phylum 0 1 class 92 152 1 0 117743 180602 Flavobacteriia 1 0 order 171 151 180510 Flavobacteriales 200644 961 Ichthyobacteriaceae 1755828 0 1 4 family 3 1755829 957 Ichthyobacterium genus 28 2 1 0 242600 Ichthyobacterium seriolicida 929 1 species 0 21 family 0 2762318 20938 1013 844 genus 1 0 1 species 0 1014 Weeksella virosa 844 no rank 10 0 2782232 10663 Chryseobacterium 10106 59732 1 0 9 genus 70 0 1 species Chryseobacterium indologenes 1911 253 0 1 species Chryseobacterium glaciei 2025 1685010 1324352 Chryseobacterium gallinarum 894 1 species 0 species 1 0 558152 1217 Chryseobacterium piperi 3503 2593645 0 no rank 3 878220 Chryseobacterium sp. StRB126 1212 1 species 0 species 1 0 2015076 1276 Chryseobacterium sp. T16E-39 0 1 species Chryseobacterium sp. IHB B 17019 1015 1721091 Chryseobacterium camelliae 486 1265445 0 1 species 557 2782228 0 1 genus 0 species 1 557 Chryseobacterium taklimakanense 536441 genus 1 2 1 0 28250 751 Ornithobacterium 750 Ornithobacterium rhinotracheale 28251 0 species 1 1 0 genus 3 2 1781 Riemerella 34084 Riemerella anatipestifer 1778 34085 0 1 species 0 1 6 59 genus Elizabethkingia 6899 308865 0 species 1 966 Elizabethkingia genomosp. 3 1756149 1117645 Elizabethkingia anophelis 2405 1 species 0 0 1 species Elizabethkingia genomosp. 4 865 1756150 238 1165 Elizabethkingia meningoseptica species 1 0 1439 Elizabethkingia miricola 172045 0 species 1 1 0 family 2 3 1289 Crocinitomicaceae 1853230 0 1 2 15 genus Fluviicola 1287 332102 species 1 0 191579 1272 Fluviicola taffensis 1 0 10 family 5 Blattabacteriaceae 6411 39782 34098 Blattabacterium 6406 9 genus 58 1 0 1 species 0 1653831 Blattabacterium cuenoti 825 2647581 4787 6 no rank 0 Blattabacterium sp. (Mastotermes darwiniensis) 694 39768 0 1 species 0 1 species Blattabacterium sp. (Periplaneta americana) 814 367488 species 1 0 624186 818 Blattabacterium sp. (Blattella germanica) 0 species 1 893 Blattabacterium sp. (Blaberus giganteus) 1186051 species 1 0 367806 708 Blattabacterium sp. (Blatta orientalis) 0 species 1 860 Blattabacterium sp. (Nauphoeta cinerea) 1316444 0 species 1 736 Blattabacterium punctulatus 164514 0 3 no rank 1929 313602 0 1 7 genus 2 1468 Candidatus Sulcia 336809 336810 Candidatus Sulcia muelleri 1461 1 species 0 0 genus 1 461 1940138 1415657 461 Candidatus Walczuchella monophlebidarum species 1 0 0 1 family Cryomorphaceae 7 246874 646 family 107 0 1 49546 147651 Flavobacteriaceae 0 1 4 34 genus Dokdonia 4190 326319 2615033 2736 no rank 2 0 313590 Dokdonia sp. MED134 1245 1 species 0 1491 Dokdonia sp. 4H-3-7-5 983548 0 species 1 326320 1420 Dokdonia donghaensis species 1 0 2 genus 2 1 0 252306 Robiginitalea 542 1 species 0 252307 Robiginitalea biformata 540 83612 2006 1 genus 0 0 species 1 2006 Psychroflexus torquis 57029 3 genus 20 1 0 286104 Winogradskyella 5642 5622 2615021 0 2 no rank 1 species 0 754409 Winogradskyella sp. PG-2 3187 1936080 Winogradskyella sp. J14-2 2435 1 species 0 0 1 91 genus 5 6065 Nonlabens 363408 328515 1533 Nonlabens dokdonensis species 1 0 no rank 2 0 2615035 2891 1 species 0 2058134 Nonlabens sp. MB-3u-79 1350 1476901 Nonlabens sp. MIC269 1541 1 species 0 Nonlabens sediminis 1550 319236 0 1 species 2265 Flavivirga 1209327 0 1 3 genus 2 1803846 Flavivirga eckloniae 2262 1 species 0 111500 1712 Muricauda 15 genus 3 0 1 species 1 0 111501 1030 Muricauda ruestringensis 516051 667 Muricauda lutaonensis species 1 0 1 0 genus 25 4 7899 Cellulophaga 104264 59600 2489 Cellulophaga algicola species 1 0 species 1 0 979 2910 Cellulophaga lytica 1 species 0 76594 Cellulophaga baltica 2475 8142 Lacinutrix 291183 0 1 73 genus 4 5426 2647285 0 no rank 2 0 species 1 2689 Lacinutrix sp. 5H-3-7-4 983544 2737 Lacinutrix sp. Bg11-31 2057808 0 species 1 species 1 0 1486034 2643 Lacinutrix venerupis 1016 Capnocytophaga 9849 15 genus 66 1 0 547 Capnocytophaga gingivalis 1017 0 species 1 0 1 species Capnocytophaga canimorsus 1216 28188 1 species 0 1019 Capnocytophaga sputigena 1166 1 species 0 1848904 Capnocytophaga stomatis 803 0 1 species Capnocytophaga ochracea 434 1018 1025 Capnocytophaga cynodegmi 28189 0 species 1 2640652 3697 6 no rank 0 0 1 species Capnocytophaga sp. oral taxon 864 595 1316593 species 1 0 1705617 419 Capnocytophaga sp. oral taxon 323 1945658 Capnocytophaga sp. H4358 756 1 species 0 0 species 1 727 Capnocytophaga sp. H2931 1945657 0 species 1 531 Capnocytophaga sp. ChDC OS43 209053 669 Capnocytophaga sp. oral taxon 878 1316596 0 species 1 45243 390 Capnocytophaga haemolytica species 1 0 species 1 0 327575 505 Capnocytophaga leadbetteri 2192 216431 0 1 genus 2192 Croceibacter atlanticus 313588 0 species 1 2785 61432 0 2 no rank 0 species 1 540 Flavobacteriaceae bacterium 3519-10 531844 1150389 2245 Flavobacteriaceae bacterium UJ101 species 1 0 1 genus 0 2700084 3588 1 species 0 1850246 Lutibacter sp. LPB0138 3588 237 17296 Flavobacterium 37 genus 9 0 1 2306 Flavobacterium indicum 312277 0 species 1 0 1 species Flavobacterium psychrophilum 1615 96345 4166 Flavobacterium johnsoniae 986 0 species 1 species 1 0 996 3370 Flavobacterium columnare 55197 1528 Flavobacterium branchiophilum species 1 0 Flavobacterium commune 1551 1306519 0 1 species 1763534 1111 Flavobacterium crassostreae species 1 0 1612 Flavobacterium gilvum 1492737 0 species 1 5 30 genus 0 1 104267 Tenacibaculum 11041 1 species 0 584609 Tenacibaculum jejuense 3515 0 species 1 2965 Tenacibaculum todarodis 1850252 107401 Tenacibaculum maritimum 2199 1 species 0 669041 Tenacibaculum dicentrarchi 2332 1 species 0 1 genus 2 0 1 153265 1382 Aequorivita species 1 0 101385 1381 Aequorivita sublithincola 2366 Wenyingzhuangia 1518147 1 0 genus 2 2 0 species 1 2364 Wenyingzhuangia fucanilytica 1790137 76831 Myroides 4368 5 104 genus 0 1 2081 2642485 0 2 no rank 1 species 0 1583100 Myroides sp. A21 1027 1458492 Myroides sp. ZB35 1054 1 species 0 1072 Myroides profundi 480520 0 species 1 species 1 0 76832 1111 Myroides odoratimimus 1 genus 0 261827 2914 0 1 species Algibacter alginicilyticus 2914 1736674 0 genus 1 1740 393005 species 1 0 2069432 1740 Tamlana sp. UJ94 5 genus 61 1 0 252356 Maribacter 7088 1178778 1071 Maribacter cobaltidurans species 1 0 5956 2615042 0 no rank 3 species 1 0 313603 1642 Maribacter sp. HTCC2170 2183 Maribacter sp. 1_2014MBL_MicDiv 1644130 0 species 1 Maribacter sp. T28 2131 1836467 0 1 species Sediminicola 958 389486 1 0 2 genus 1 2648869 957 1 no rank 0 1 species 0 1453352 Sediminicola sp. YIK13 957 genus 1 0 112040 804 Zobellia galactanivorans 804 63186 0 1 species 119 genus 6 0 1 52959 15691 Polaribacter 0 1 species Polaribacter vadi 3282 1774273 0 no rank 3 8613 196858 3007 Polaribacter sp. BM10 1529069 0 species 1 313598 3070 Polaribacter sp. MED152 species 1 0 1 species 0 2058137 Polaribacter sp. ALD11 2536 0 species 1 3677 Polaribacter reichenbachii 996801 0 genus 1 1587 143222 0 no rank 1 1587 2633436 1 species 0 1729720 Salegentibacter sp. T436 1587 1301 178469 0 genus 1 0 1 species Arenibacter algicola 1301 616991 Zunongwangia 2041 417127 1 0 2 genus 1 398743 2040 Zunongwangia profunda species 1 0 292691 Gramella 4724 5 genus 26 1 0 0 species 1 817 Gramella flava 1486245 0 1 species Gramella forsetii 1571 411153 2126553 1156 Gramella sp. SH35 species 1 0 1913577 1154 Gramella sp. LPB0144 species 1 0 8 genus 2 0 1 358023 3187 Lutibacter 1622118 Lutibacter profundi 3179 1 species 0 0 1 3 6 genus Formosa 3333 225842 0 no rank 2 3327 2644710 0 1 species Formosa sp. Hel3_A1_48 1850 1336795 Formosa sp. Hel1_33_131 1477 1336794 0 1 species 2226 1204360 0 genus 1 Siansivirga zeaxanthinifaciens 2226 762954 0 1 species 1649495 Seonamhaeicola 2622 2 genus 2 1 0 2622645 2620 1 no rank 0 1 species 0 1936081 Seonamhaeicola sp. S2-3 2620 1176327 1035 genus 1 0 1035 2636237 0 no rank 1 0 species 1 1035 Aureitalea sp. RR4-38 2094025 1 genus 2 0 1 336276 2424 Olleya 2615019 2423 1 no rank 0 species 1 0 2058135 2423 Olleya sp. Bg11-27 1153 1333713 0 family 2 Owenweeksia 1153 267986 1 0 2 genus 21 253245 1132 Owenweeksia hongkongensis species 1 0 117747 17365 Sphingobacteriia 13 class 24 0 1 24 order 23 0 1 200666 17352 Sphingobacteriales 1 0 22 family 61 Sphingobacteriaceae 17328 84566 84567 Pedobacter 5306 6 45 genus 0 1 1 species 0 430522 Pedobacter steynii 1006 1002 2628915 0 1 no rank 0 1 species Pedobacter sp. PACM 27299 1002 1727164 0 1 species Pedobacter heparinus 901 984 363852 Pedobacter ginsengisoli 1160 1 species 0 188932 Pedobacter cryoconitis 1192 1 species 0 9 genus 2 0 1 1649482 1293 Pseudopedobacter 151895 Pseudopedobacter saltans 1284 1 species 0 28453 Sphingobacterium 4502 6 genus 30 1 0 1010 Sphingobacterium mizutaii 848 1 species 0 2609468 3624 4 no rank 0 1086 Sphingobacterium sp. ML3W 1538644 0 species 1 886 Sphingobacterium sp. B29 1933220 0 species 1 2003121 Sphingobacterium sp. G1-14 883 1 species 0 1 species 0 743722 Sphingobacterium sp. 21 769 423349 Mucilaginibacter 2887 4 24 genus 0 1 1234841 768 Mucilaginibacter sp. BJC16-A31 species 1 0 1550579 Mucilaginibacter gotjawali 1485 1 species 0 0 1 no rank 610 2617802 1 species 0 1300914 Mucilaginibacter sp. PAMC 26640 610 84568 2094 no rank 1 0 2094 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 0 species 1 0 1 5 genus 2 1185 Solitalea 929509 995 1180 Solitalea canadensis species 1 0 1 0 class 11 17 5831 Chitinophagia 1853228 1853229 Chitinophagales 5820 16 order 11 1 0 15 45 family 0 1 563835 Chitinophagaceae 5809 Chitinophaga 1208 79328 0 1 3 2 genus 0 1 species Chitinophaga pinensis 649 79329 2029983 Chitinophagaceae bacterium 13 557 1 species 0 398041 Flavisolibacter 853 2 genus 1 1 0 species 1 0 1492898 852 Flavisolibacter tropicus 379899 Niabella 1193 3 genus 12 1 0 1176587 Niabella ginsenosidivorans 609 1 species 0 446683 Niabella soli 572 1 species 0 Filimonas 671 649460 1 0 2 genus 7 0 1 species Filimonas lacunae 664 477680 1 0 2 genus 2 Arachidicoccus 766 1769012 0 1 no rank 764 2636138 764 Arachidicoccus sp. BS20 1850526 0 species 1 1073 Niastella 354354 1 0 genus 5 2 1 species 0 354356 Niastella koreensis 1068 0 1 58 order 7 3862 Bacteroidetes Order II. Incertae sedis 1100069 6 family 37 1 0 563843 Rhodothermaceae 3804 Rhodothermus 1358 29548 1 0 2 genus 8 29549 Rhodothermus marinus 1350 1 species 0 1196022 1638 1 no rank 0 species 1 0 1779382 1638 Rhodothermaceae bacterium RA 2 4 genus 0 1 146918 Salinibacter 771 1 species 0 146919 Salinibacter ruber 767 200643 21837 Bacteroidia 48 class 72 0 1 1 0 order 71 59 17086 Bacteroidales 171549 Bacteroidaceae 4317 815 0 1 11 14 family 816 4303 Bacteroides 47 genus 10 0 1 0 1 species Bacteroides heparinolyticus 343 28113 28119 Bacteroides zoogleoformans 275 1 species 0 species 1 0 1796613 356 Bacteroides caecimuris species 1 0 290053 338 Bacteroides helcogenes Bacteroides cellulosilyticus 495 246787 0 1 species 0 1 species Bacteroides fragilis 899 817 1 species 0 28116 Bacteroides ovatus 562 0 1 species Bacteroides thetaiotaomicron 593 818 1 species 0 47678 Bacteroides caccae 395 Dysgonamonadaceae 1578 2005520 0 1 6 1 family 1784836 743 Fermentimonas 8 genus 2 0 1 735 Fermentimonas caenicola 1562970 0 species 1 307628 Petrimonas 371 2 genus 2 1 0 species 1 0 1642646 369 Petrimonas mucosa 0 genus 1 463 294702 0 1 species Proteiniphilum saccharofermentans 463 1642647 0 no rank 1 375 185291 0 species 1 375 Bacteroidales bacterium CF 1400053 1853231 Odoribacteraceae 481 3 family 1 1 0 1 0 genus 5 2 480 Odoribacter 283168 Odoribacter splanchnicus 475 28118 0 1 species 0 1 3 1 family Barnesiellaceae 294 2005519 Barnesiella 293 397864 0 1 2 3 genus 397865 290 Barnesiella viscericola species 1 0 0 family 2 704 2005523 346096 704 Paludibacter 8 genus 2 0 1 1 species 0 185300 Paludibacter propionicigenes 696 1 0 5 family 3 Rikenellaceae 798 171550 Mucinivorans 322 1611681 1 0 2 genus 6 species 1 0 1433126 316 Mucinivorans hirudinis genus 4 2 1 0 239759 473 Alistipes 1 species 0 214856 Alistipes finegoldii 469 171552 3411 Prevotellaceae 6 family 11 0 1 838 Prevotella 3405 10 genus 31 1 0 589436 273 Prevotella fusca species 1 0 Prevotella enoeca 230 76123 0 1 species 339 Prevotella melaninogenica 28132 0 species 1 2638335 439 1 no rank 0 652716 439 Prevotella sp. oral taxon 299 species 1 0 species 1 0 839 392 Prevotella ruminicola 916 Prevotella intermedia 28131 0 species 1 0 1 species Prevotella denticola 200 28129 294 Prevotella dentalis 52227 0 species 1 species 1 0 1177574 291 Prevotella jejuni 2005525 1528 Tannerellaceae family 1 7 1 0 3 genus 4 1 0 375288 Parabacteroides 782 0 no rank 1 396 2649774 396 Parabacteroides sp. CT06 2025876 0 species 1 1 species 0 823 Parabacteroides distasonis 382 195950 Tannerella 745 3 genus 1 1 0 326 2620507 0 no rank 1 326 Tannerella sp. oral taxon HOT-286 712710 0 species 1 28112 418 Tannerella forsythia species 1 0 0 1 4 family 4 620 Porphyromonadaceae 171551 0 1 3 9 genus Porphyromonas 616 836 species 1 0 28123 222 Porphyromonas asaccharolytica 1 species 0 837 Porphyromonas gingivalis 385 0 no rank 5 2909 333046 3 genus 0 909656 1529 508 Bacteroides vulgatus 821 0 species 1 1 species 0 376805 Bacteroides salanitronis 529 492 Bacteroides dorei 357276 0 species 1 2 genus 6 1 0 511434 Candidatus Azobacteroides 1380 1374 Candidatus Azobacteroides pseudotrichonymphae 511435 0 species 1 12 11 order 0 1 1970189 Marinilabiliales 4703 0 1 4 family 3 1202 Prolixibacteraceae 1471398 1198 Draconibacterium 1471399 1 0 genus 3 2 species 1 0 1168034 1195 Draconibacterium orientale 3 4 family 0 1 558415 Marinilabiliaceae 890 0 1 6 genus 2 886 Alkalitalea 1193324 889453 880 Alkalitalea saponilacus species 1 0 3 family 7 1 0 1970190 Salinivirgaceae 954 1 0 genus 6 2 947 Salinivirga 1970191 941 Salinivirga cyanobacteriivorans 1307839 0 species 1 Marinifilaceae 1646 1573805 1 0 2 family 4 1642 2060722 0 genus 1 species 1 0 1717717 1642 Marinifilaceae bacterium SPP2 34527 Cytophagia 768503 0 1 55 class 62 1 0 order 144 61 34472 Cytophagales 768507 10 family 14 1 0 563798 Cyclobacteriaceae 5846 0 1 2 18 genus Belliella 1483 232244 0 species 1 1465 Belliella baltica 232259 2671 Cyclobacterium 68288 1 0 genus 11 3 Cyclobacterium marinum 1323 104 0 1 species 320787 1337 Cyclobacterium amurskyense species 1 0 genus 14 2 1 0 390846 773 Echinicola 390884 Echinicola vietnamensis 759 1 species 0 2 9 genus 0 1 246875 Algoriphagus 905 1 species 0 1727163 Algoriphagus sp. M8-2 896 2083 2762301 0 2 family 2083 Marivirga 869806 0 1 7 genus 2 1006 Marivirga tractuosa 2076 1 species 0 1 0 family 10 3 1116 Persicobacteraceae 1853234 59740 Persicobacter 1106 2 17 genus 0 1 1 no rank 0 2664020 1089 1085624 Persicobacter sp. JZB09 1089 1 species 0 1937968 Bernardetiaceae 2379 3 6 family 0 1 0 1 2 14 genus Bernardetia 2373 1937972 999 2359 Bernardetia litoralis species 1 0 0 1 45 family 16 8225 Hymenobacteraceae 1853232 4989 Hymenobacter 89966 0 1 68 genus 8 1 species 0 1446467 Hymenobacter swuensis 757 5 no rank 0 2615202 3387 0 1 species Hymenobacter sp. PAMC 26554 812 1484116 0 species 1 528 Hymenobacter sp. DG25B 1385664 Hymenobacter sp. APR13 756 1356852 0 1 species 1385663 514 Hymenobacter sp. DG25A species 1 0 1484118 Hymenobacter sp. PAMC 26628 777 1 species 0 0 1 species Hymenobacter sedentarius 777 1411621 1292 Pontibacter 323449 1 0 genus 16 3 0 1 species Pontibacter akesuensis 571 388950 0 species 1 705 Pontibacter korlensis 400092 4 17 genus 0 1 1379908 Rufibacter 1899 512763 725 Rufibacter tibetensis species 1 0 no rank 2 0 2639626 1157 species 1 0 1379910 663 Rufibacter sp. DG31D 0 species 1 494 Rufibacter sp. DG15C 1379909 11 family 4 0 1 200667 5476 Flammeovirgaceae Flammeovirga 2092 59739 1 0 2 genus 14 2078 2637820 0 1 no rank 1191459 Flammeovirga sp. MY04 2078 1 species 0 340671 3373 1 no rank 0 0 species 1 3373 Flammeovirgaceae bacterium 311 1257021 Cytophagaceae 8356 89373 1 0 17 family 24 978 1089 Cytophaga genus 23 2 1 0 985 Cytophaga hutchinsonii 1066 1 species 0 5 genus 2 0 1 319458 667 Leadbetterella Leadbetterella byssophila 662 316068 0 1 species 6 genus 18 1 0 107 Spirosoma 3594 Spirosoma sp. HA7 765 2057025 0 1 species 1211326 Spirosoma aerolatum 744 1 species 0 564064 Spirosoma rigui 564 1 species 0 1178516 676 Spirosoma montaniterrae species 1 0 species 1 0 1379870 827 Spirosoma radiotolerans 105 Runella 1520 2 2 genus 0 1 1 species 0 106 Runella slithyformis 1518 6 genus 2 0 1 861914 538 Fibrella 0 1 no rank 532 2620963 1 species 0 1834519 Fibrella sp. ES10-3-2-2 532 2 genus 10 1 0 120831 Dyadobacter 924 0 1 species Dyadobacter fermentans 914 94254 1501348 847 Amoebophilaceae family 2 5 1 0 274 Candidatus Cardinium 273135 0 1 1 genus 2 0 no rank 1 273 2641185 1 species 0 249402 Cardinium endosymbiont of Encarsia pergandiella 273 1 0 genus 4 2 571 Candidatus Amoebophilus 281119 281120 Candidatus Amoebophilus asiaticus 567 1 species 0 0 1 4 class 8 1911 Saprospiria 1937959 1 0 7 order 3 Saprospirales 1907 1936988 1 family 3 0 1 1937961 1286 Haliscomenobacteraceae 1 0 2 genus 6 Haliscomenobacter 1285 2349 species 1 0 2350 1279 Haliscomenobacter hydrossis 1 0 family 1 3 618 Saprospiraceae 89374 617 Saprospira 1007 0 1 2 genus 2 0 species 1 615 Saprospira grandis 1008 4 phylum 0 65842 564 4 class 1 1 0 204430 Fibrobacteria 564 563 Fibrobacterales 218872 1 0 order 3 3 2 family 0 204431 560 560 Fibrobacter 832 0 1 1 genus 2 833 559 Fibrobacter succinogenes species 1 0 0 clade 1717 7573543 1783272 phylum 6 102 1 0 544448 45833 Tenericutes no rank 2 0 2799557 707 2 genus 2 1 0 1912503 Candidatus Izimaplasma 707 705 2624196 0 no rank 1 1 species 0 1541959 Candidatus Izimaplasma sp. HR1 705 0 2 no rank 1498 713063 Tenericutes bacterium MZ-XQ 709 1911683 0 1 species 789 Tenericutes bacterium MO-XQ 1911684 0 species 1 97 class 113 1 0 31969 Mollicutes 43622 0 1 13 15 order Acholeplasmatales 4169 186329 4154 Acholeplasmataceae 2146 1 0 family 15 12 5 7 genus 0 1 2147 Acholeplasma 2299 61635 354 Acholeplasma brassicae species 1 0 0 1 species Acholeplasma laidlawii 554 2148 0 1 species Acholeplasma oculi 600 35623 species 1 0 38986 784 Acholeplasma palmae Candidatus Phytoplasma 1840 33926 1 0 6 genus 20 425 85630 0 species group 1 Candidatus Phytoplasma mali 425 37692 0 1 species 85632 389 1 species group 0 Candidatus Phytoplasma australiense 389 59748 0 1 species 0 3 species group 1006 85620 319 Maize bushy stunt phytoplasma 202462 0 species 1 0 1 species Aster yellows witches'-broom phytoplasma 309 229545 Onion yellows phytoplasma 378 100379 0 1 species 2085 Mycoplasmatales 20816 44 67 order 0 1 2092 Mycoplasmataceae 20749 43 family 50 1 0 13789 Mycoplasma 2093 1 0 genus 165 27 species 1 0 28227 686 Mycoplasma penetrans 0 1 species Mycoplasma bovoculi 390 45362 0 species 1 318 Mycoplasma dispar 86660 0 1 species Mycoplasma wenyonii 125 65123 114 Mycoplasma pneumoniae 2104 0 species 1 Mycoplasma genitalium 246 2097 0 1 species 984991 314 Mycoplasma parvum species 1 0 Mycoplasma flocculare 304 2128 0 1 species Mycoplasma ovis 175 171632 0 1 species Mycoplasma suis 242 57372 0 1 species 0 species 1 572 Mycoplasma putrefaciens 2123 Mycoplasma canadense 476 29554 0 1 species species group 3 0 656088 3294 1558 Mycoplasma mycoides 2102 0 species 1 2105 778 Mycoplasma leachii species 1 0 2095 Mycoplasma capricolum 958 1 species 0 0 species 1 428 Mycoplasma crocodyli 50052 species 1 0 2118 602 Mycoplasma mobile 689 Mycoplasma yeatsii 51365 0 species 1 136241 Mycoplasma haemocanis 274 1 species 0 1 species 0 2100 Mycoplasma hyorhinis 506 1 no rank 0 2683645 391 391 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 0 species 1 29501 840 Mycoplasma haemofelis species 1 0 2096 356 Mycoplasma gallisepticum species 1 0 Mycoplasma hyopneumoniae 1253 2099 0 1 species 1 species 0 2098 Mycoplasma hominis 770 Mycoplasma arthritidis 259 2111 0 1 species 2129 992 Ureaplasma genus 4 3 1 0 0 1 species Ureaplasma urealyticum 468 2130 0 1 species Ureaplasma parvum 520 134821 2767358 5918 12 genus 0 0 species 1 385 Mycoplasma bovirhinis 29553 species 1 0 2110 554 Mycoplasma agalactiae 2107 Mycoplasma pulmonis 494 1 species 0 1 species 0 2112 Mycoplasma bovigenitalium 369 1 species 0 29555 Mycoplasma canis 565 Mycoplasma fermentans 485 2115 0 1 species 1 species 0 2094 Mycoplasma arginini 492 0 species 1 317 Mycoplasma californicum 2113 359 Mycoplasma synoviae 2109 0 species 1 species 1 0 171284 529 Mycoplasma cynos Mycoplasma bovis 1000 28903 0 1 species 0 1 species Mycoplasma pullorum 369 48003 186328 Entomoplasmatales 18524 39 30 order 0 1 33925 Entomoplasmataceae 5507 14 family 8 1 0 1 0 5 genus 20 Entomoplasma 1677 46238 211 Entomoplasma freundtii 74700 0 species 1 species 1 0 215578 508 Entomoplasma somnilux Entomoplasma melaleucae 529 81459 0 1 species 214888 409 Entomoplasma luminosum species 1 0 46239 Mesoplasma 3822 8 genus 82 1 0 0 species 1 428 Mesoplasma syrphidae 225999 Mesoplasma coleopterae 466 324078 0 1 species 1055 Mesoplasma florum 2151 0 species 1 0 1 species Mesoplasma lactucae 358 138853 216427 537 Mesoplasma chauliocola species 1 0 Mesoplasma entomophilum 444 2149 0 1 species 1 species 0 219745 Mesoplasma tabanidae 452 12987 Spiroplasmataceae 2131 1 0 family 24 24 2132 Spiroplasma 12963 23 genus 158 1 0 1 species 0 216946 Spiroplasma turonicum 743 2139 Spiroplasma clarkii 534 1 species 0 Spiroplasma chrysopicola 404 216933 0 1 species 1 species 0 216937 Spiroplasma floricola 849 0 1 species Spiroplasma syrphidicola 391 216945 0 1 species Spiroplasma corruscae 662 216934 2137 459 Spiroplasma apis species 1 0 216938 528 Spiroplasma helicoides species 1 0 Spiroplasma cantharicola 827 362837 0 1 species 356 Spiroplasma atrichopogonis 1114980 0 species 1 0 species 1 790 Spiroplasma litorale 216942 0 species 1 416 Spiroplasma sabaudiense 216944 2133 556 Spiroplasma citri species 1 0 794 Spiroplasma culicicola 216935 0 species 1 Spiroplasma mirum 352 2144 0 1 species 0 2 no rank 1030 2637901 species 1 0 1914410 517 Spiroplasma sp. NBRC 100390 1 species 0 1898044 Spiroplasma sp. TU-14 513 species 1 0 216936 693 Spiroplasma diminutum 315358 Spiroplasma eriocheiris 484 1 species 0 2145 Spiroplasma taiwanense 782 1 species 0 0 species 1 500 Spiroplasma monobiae 2136 0 1 species Spiroplasma kunkelii 655 47834 0 1 45 2 phylum Chloroflexi 8776 200795 32061 Chloroflexia 2849 11 17 class 0 1 order 19 10 1 0 32064 2832 Chloroflexales 1508594 1612 suborder 5 0 1612 Chloroflexaceae 1106 0 1 4 family 5 1 0 4 genus 18 Chloroflexus 1608 1107 Chloroflexus aurantiacus 966 1108 0 1 2 483 species 0 1 strain Chloroflexus sp. Y-400-fl 483 480224 0 species 1 624 Chloroflexus aggregans 152260 0 4 suborder 1201 1508595 4 family 1 1 0 1508635 Roseiflexaceae 1201 1 0 3 genus 5 Roseiflexus 1200 120961 Roseiflexus castenholzii 624 120962 0 1 species 571 2609473 0 1 no rank species 1 0 357808 571 Roseiflexus sp. RS-1 1 0 class 2 4 817 Caldilineae 475962 order 5 3 1 0 475963 815 Caldilineales 475964 810 2 family 0 233191 Caldilinea 810 2 1 genus 0 1 0 species 1 809 Caldilinea aerophila 133453 1567 Ardenticatenia 1382928 1 0 class 10 5 order 11 4 1 0 1382929 1557 Ardenticatenales 7 family 3 0 1 1382930 1546 Ardenticatenaceae 13 genus 2 0 1 1988031 1539 Candidatus Promineofilum 1806508 1526 Candidatus Promineofilum breve species 1 0 1 0 class 3 7 995 Anaerolineae 292625 292629 992 Anaerolineales order 9 6 1 0 6 family 5 0 1 292628 983 Anaerolineaceae 1 no rank 0 1324991 247 1889813 247 Anaerolineaceae bacterium oral taxon 439 species 1 0 353 2019482 0 1 genus 1986204 Brevefilum fermentans 353 1 species 0 genus 3 2 1 0 233189 377 Anaerolinea 0 species 1 374 Anaerolinea thermophila 167964 189775 Thermomicrobia 1274 9 10 class 0 1 392 Thermomicrobiales 189776 1 0 order 13 4 189777 379 Thermomicrobiaceae family 1 3 1 0 499 Thermomicrobium 378 2 3 genus 0 1 0 species 1 375 Thermomicrobium roseum 500 4 subclass 0 85000 872 872 Sphaerobacterales 85001 0 1 12 order 4 860 255728 0 suborder 3 85002 860 Sphaerobacteraceae 6 family 3 0 1 Sphaerobacter 854 2056 1 0 2 genus 7 2057 Sphaerobacter thermophilus 847 1 species 0 301297 Dehalococcoidia 1272 8 class 4 1 0 1 0 4 order 1 Dehalococcoidales 716 1202465 1202464 715 3 family 0 715 Dehalococcoides 61434 1 0 genus 10 3 183 237581 0 1 no rank 0 species 1 183 Dehalococcoides sp. UCH007 1522671 0 1 species Dehalococcoides mccartyi 522 61435 17 genus 3 0 1 670486 552 Dehalogenimonas species 1 0 1839801 277 Dehalogenimonas formicexedens 258 Dehalogenimonas lykanthroporepellens 552810 0 species 1 phylum 31 659 1 0 201174 332907 Actinobacteria class 31 33 1 0 84998 5612 Coriobacteriia Coriobacteriales 2075 84999 0 1 14 23 order 763 Coriobacteriaceae 84107 0 1 3 family 6 2 genus 15 1 0 102106 Collinsella 239 0 species 1 224 Collinsella aerofaciens 74426 0 1 no rank 261 84113 1531429 261 Coriobacteriaceae bacterium 68-1-3 species 1 0 2 22 genus 0 1 33870 Coriobacterium 260 Coriobacterium glomerans 238 33871 0 1 species 7 family 20 1 0 1643824 Atopobiaceae 1289 0 1 genus 262 2767353 species 1 0 1382 262 Atopobium parvulum 133925 1003 Olsenella genus 28 4 1 0 0 no rank 1 296 2638792 712411 296 Olsenella sp. oral taxon 807 species 1 0 133926 270 Olsenella uli species 1 0 Olsenella sp. Marseille-P2300 409 1805478 0 1 species 0 genus 1 4 Atopobium 1380 Eggerthellales 3506 1643822 0 1 18 27 order family 71 17 1 0 1643826 3479 Eggerthellaceae 1 0 2 genus 2 Adlercreutzia 413 447020 1 species 0 446660 Adlercreutzia equolifaciens 411 Phoenicibacter 325 1981050 1 0 2 genus 2 0 species 1 323 Phoenicibacter massiliensis 1944646 8 genus 3 0 1 84111 800 Eggerthella 247 2648737 0 1 no rank 0 1 species Eggerthella sp. YY7918 247 502558 545 Eggerthella lenta 84112 0 species 1 20 genus 3 0 1 644652 1100 Gordonibacter species 1 0 1335613 509 Gordonibacter urolithinfaciens 0 1 species Gordonibacter massiliensis 571 1841863 0 1 1 genus 2 207 Cryptobacterium 84162 0 species 1 206 Cryptobacterium curtum 84163 79603 256 Denitrobacterium 2 genus 2 0 1 0 1 species Denitrobacterium detoxificans 254 79604 307 Slackia 84108 1 0 genus 1 2 species 1 0 84110 306 Slackia heliotrinireducens 1 0 class 5 5 3059 Thermoleophilia 1497346 0 1 4 32 order Solirubrobacterales 3054 588673 1 0 3 family 11 Conexibacteraceae 3022 320583 3011 Conexibacter 191494 1 0 genus 9 2 species 1 0 191495 3002 Conexibacter woesei 1 0 class 4 7 2458 Acidimicrobiia 84992 84993 2454 Acidimicrobiales order 29 6 1 0 Acidimicrobiaceae 550 84994 0 1 3 11 family genus 16 2 1 0 53634 539 Acidimicrobium 53635 523 Acidimicrobium ferrooxidans species 1 0 2448023 1875 family 2 0 15 genus 2 0 1 682522 1875 Ilumatobacter Ilumatobacter coccineus 1860 467094 0 1 species 1146 Rubrobacteria 84995 0 1 4 class 6 5 31 order 0 1 84996 Rubrobacterales 1142 0 1 4 6 family Rubrobacteraceae 1111 84997 genus 13 3 1 0 42255 1105 Rubrobacter 49319 Rubrobacter xylanophilus 601 1 species 0 42256 Rubrobacter radiotolerans 491 1 species 0 0 4 no rank 1095 1752188 1 species 0 1848255 Actinobacteria bacterium IMCC25003 191 1848754 Actinobacteria bacterium IMCC19121 381 1 species 0 Actinobacteria bacterium IMCC26077 207 1848755 0 1 species 1848756 Actinobacteria bacterium IMCC26103 316 1 species 0 1 0 class 1128 603 319506 Actinobacteria 1760 1643683 339 Acidothermales 1 order 4 0 1 1 0 3 family 1 Acidothermaceae 338 85032 28048 337 Acidothermus genus 3 2 1 0 0 species 1 334 Acidothermus cellulolyticus 28049 Bifidobacteriales 6029 85004 1 0 26 order 21 Bifidobacteriaceae 6008 31953 0 1 25 52 family 102 genus 19 0 1 1678 5089 Bifidobacterium 35760 345 Bifidobacterium choerinum species 1 0 1683 197 Bifidobacterium angulatum species 1 0 1689 Bifidobacterium dentium 181 1 species 0 367 Bifidobacterium catenulatum 1686 1 0 species 142 2 0 1 subspecies Bifidobacterium kashiwanohense 225 630129 species 1 0 1687 106 Bifidobacterium coryneforme 225 Bifidobacterium asteroides 1684 0 species 1 28025 283 Bifidobacterium animalis species 1 0 0 species 1 642 Bifidobacterium longum 216816 0 1 species Bifidobacterium scardovii 340 158787 197 Bifidobacterium adolescentis 1680 0 species 1 1 species 0 28026 Bifidobacterium pseudocatenulatum 204 Bifidobacterium thermophilum 186 33905 0 1 species 0 1 species Bifidobacterium breve 510 1685 1 species 0 1694 Bifidobacterium pseudolongum 469 1691 110 Bifidobacterium indicum species 1 0 638619 332 Bifidobacterium actinocoloniiforme species 1 0 1681 Bifidobacterium bifidum 293 1 species 0 0 genus 1 139 196082 Parascardovia denticolens 139 78258 0 1 species 1 genus 2 0 1 196081 145 Scardovia 0 species 1 144 Scardovia inopinata 78259 Gardnerella 583 2701 0 1 2 1 genus 1 species 0 2702 Gardnerella vaginalis 582 4 order 5 1 0 622452 Kineosporiales 912 Kineosporiaceae 907 83778 1 0 3 family 12 33981 895 Kineococcus 2 genus 2 0 1 0 1 species Kineococcus radiotolerans 893 131568 82 126 order 0 1 85011 Streptomycetales 95544 95418 Streptomycetaceae 2062 1 0 family 368 81 1883 Streptomyces 89260 75 1999 genus 0 1 2343 Streptomyces albus 1888 0 species 1 379067 Streptomyces bingchenggensis 1531 1 species 0 24623 2593676 0 no rank 24 species 1 0 862751 794 Streptomyces sp. SirexAA-E 1 species 0 1262452 Streptomyces sp. 769 1134 0 species 1 952 Streptomyces sp. CLI2509 1984801 0 1 species Streptomyces sp. P3 1283 2135430 0 species 1 1163 Streptomyces sp. CMB-StM0423 2059884 species 1 0 1961713 928 Streptomyces sp. MOE7 1725411 Streptomyces sp. CdTB01 1229 1 species 0 1 species 0 1964449 Streptomyces sp. 3211 1109 1187 Streptomyces sp. Sge12 1972846 0 species 1 Streptomyces sp. S8 767 1837283 0 1 species species 1 0 465541 1026 Streptomyces sp. Mg1 1495638 1421 Streptomyces sp. M56 species 1 0 1751294 834 Streptomyces sp. 4F species 1 0 Streptomyces sp. CCM_MD2014 877 1561022 0 1 species 1812480 1066 Streptomyces sp. fd1-xmd species 1 0 1200 Streptomyces sp. CNQ-509 444103 0 species 1 species 1 0 1661694 883 Streptomyces sp. Tue 6075 1 species 0 1649184 Streptomyces sp. CFMR 7 811 1 species 0 234612 Streptomyces sp. TN58 824 1849967 1085 Streptomyces sp. SAT1 species 1 0 1 species 0 1841249 Streptomyces sp. RTd22 1221 1 species 0 206662 Streptomyces sp. FR-008 1153 Streptomyces sp. WAC00288 894 2094021 0 1 species 782 Streptomyces sp. PAMC 26508 1265601 0 species 1 1140 Streptomyces malaysiensis 92644 0 species 1 0 species 1 1124 Streptomyces scabiei 1930 1170 Streptomyces alfalfae 1642299 0 species 1 1 species 0 68214 Streptomyces griseochromogenes 1039 Streptomyces violaceusniger 1129 68280 0 1 species 0 2 species group 1797 629295 species subgroup 1 0 1482596 945 1 species 0 1911 Streptomyces griseus 945 0 species subgroup 1 852 1482558 0 species 1 852 Streptomyces globisporus 1908 408015 735 Streptomyces xiamenensis species 1 0 0 species 1 789 Streptomyces rubrolavendulae 285473 species 1 0 38300 941 Streptomyces pristinaespiralis species 1 0 54571 2190 Streptomyces venezuelae 1043 Streptomyces lividans 1916 0 species 1 1950 806 Streptomyces peucetius species 1 0 1 species 0 1355015 Streptomyces pluripotens 759 0 species 1 1231 Streptomyces lincolnensis 1915 0 1 species Streptomyces cattleya 1015 29303 0 1 species Streptomyces cyaneogriseus 836 68192 1 species 0 68570 Streptomyces albulus 4222 0 1 species Streptomyces albireticuli 1064 1940 1 species 0 1616117 Streptomyces formicae 1358 1 species 0 67267 Streptomyces alboflavus 1239 0 species group 2 3623 1477431 species 1 0 1902 2718 Streptomyces coelicolor 42239 Streptomyces sampsonii 905 1 species 0 0 1 species Streptomyces vietnamensis 1196 362257 0 species 1 896 Streptomyces fulvissimus 68202 0 species 1 1003 Streptomyces noursei 1971 146923 885 Streptomyces parvulus species 1 0 0 species 1 2493 Streptomyces hygroscopicus 1912 0 1 species Streptomyces niveus 972 193462 1 species 0 1889 Streptomyces ambofaciens 1011 895 Streptomyces sp. XZHG99 2049881 0 species 1 1783515 968 Streptomyces sp. S10(2016) species 1 0 0 1 species Streptomyces pactum 1893 68249 1 species 0 1437453 Streptomyces leeuwenhoekii 906 0 1 species Streptomyces reticuli 1021 1926 species 1 0 33903 1132 Streptomyces avermitilis 1935 Streptomyces violaceoruber 788 1 species 0 1 species 0 1169025 Streptomyces pratensis 764 0 species 1 946 Streptomyces clavuligerus 1901 0 species 1 1038 Streptomyces gilvosporeus 553510 0 species 1 946 Streptomyces glaucescens 1907 0 1 species Streptomyces lydicus 2729 47763 0 species 1 892 Streptomyces xinghaiensis 1038928 species 1 0 1914 1082 Streptomyces lavendulae 1 species 0 164348 Streptomyces puniciscabiei 1034 42684 Streptomyces collinus 945 1 species 0 0 1 species Streptomyces chartreusis 928 1969 75293 Streptomyces autolyticus 2151 1 species 0 0 1 44 genus 5 5790 Kitasatospora 2063 species 1 0 1894 1034 Kitasatospora aureofaciens 1 species 0 2066 Kitasatospora setae 1578 1 no rank 0 2633591 1275 0 species 1 1275 Kitasatospora sp. MMS16-BH015 2018025 1859 Kitasatospora albolonga 68173 0 species 1 2730 Catenulisporales 414714 0 1 8 order 4 1 0 family 27 3 2722 Catenulisporaceae 414877 Catenulispora 2695 414878 0 1 2 10 genus 0 1 species Catenulispora acidiphila 2685 304895 302 order 147 0 1 85006 50675 Micrococcales 32 family 9 0 1 85017 4206 Promicromonosporaceae 186188 Xylanimonas 778 2 7 genus 0 1 186189 Xylanimonas cellulosilytica 771 1 species 0 254250 1573 Isoptericola 13 genus 3 0 1 139208 Isoptericola variabilis 774 1 species 0 786 Isoptericola dokdonensis 372663 0 species 1 16 genus 3 0 1 157920 1823 Cellulosimicrobium 2624466 938 1 no rank 0 1 species 0 1980001 Cellulosimicrobium sp. TH-20 938 1710 Cellulosimicrobium cellulans 869 1 species 0 0 1 3 5 family Sanguibacteraceae 795 145360 1 0 2 genus 7 Sanguibacter 790 60919 1 species 0 60920 Sanguibacter keddieii 783 85018 268 Dermatophilaceae family 1 3 1 0 Dermatophilus 267 1862 1 0 2 genus 2 Dermatophilus congolensis 265 1863 0 1 species Brevibacteriaceae 849 85019 0 1 3 19 family Brevibacterium 830 1696 1 0 2 genus 5 Brevibacterium linens 825 1703 0 1 species 11980 Micrococcaceae 1268 0 1 101 family 39 Glutamicibacter 448 1742989 0 1 2 4 genus 444 Glutamicibacter arilaitensis 256701 0 species 1 1 0 2 genus 5 Micrococcus 407 1269 0 species 1 402 Micrococcus luteus 1270 0 1 11 genus 4 1470 Kocuria 57493 71999 Kocuria palustris 449 1 species 0 72000 376 Kocuria rhizophila species 1 0 1 species 0 446860 Kocuria flava 634 2 genus 1 1 0 1868332 Neomicrococcus 196 556325 Neomicrococcus aestuarii 195 1 species 0 3 genus 2 0 1 596707 659 Sinomonas 37927 Sinomonas atrocyanea 656 1 species 0 0 1 genus 253 2078575 253 Arthrobacter sp. IHBB 11108 1618207 0 species 1 1 0 2 genus 2 Paenarthrobacter 340 1742992 Paenarthrobacter aurescens 338 43663 0 1 species 1663 Arthrobacter 6283 15 93 genus 0 1 0 1 species Arthrobacter alpinus 627 656366 235627 5135 12 no rank 0 Arthrobacter sp. FB24 322 290399 0 1 species 2079227 1109 Arthrobacter sp. PGP41 species 1 0 1652545 Arthrobacter sp. YC-RL1 359 1 species 0 Arthrobacter sp. Rue61a 285 1118963 0 1 species 0 1 species Arthrobacter sp. LS16 361 1690248 1357915 441 Arthrobacter sp. QXT-31 species 1 0 0 1 species Arthrobacter sp. ZXY-2 350 1806905 Arthrobacter sp. ERGS1:01 529 1704044 0 1 species 1 species 0 1494608 Arthrobacter sp. PAMC 25486 372 Arthrobacter sp. YN 283 2020486 0 1 species 460 Arthrobacter sp. U41 1849032 0 species 1 264 Arthrobacter sp. ATCC 21022 1771959 0 species 1 37928 428 Arthrobacter crystallopoietes species 1 0 0 1 14 genus 4 1220 Pseudarthrobacter 1742993 species 1 0 121292 427 Pseudarthrobacter sulfonivorans 1 species 0 85085 Pseudarthrobacter chlorophenolicus 370 Pseudarthrobacter phenanthrenivorans 409 361575 0 1 species 3 4 genus 0 1 32207 Rothia 405 Rothia dentocariosa 135 2047 0 1 species 0 species 1 266 Rothia mucilaginosa 43675 1645 198 genus 1 0 species 1 0 1646 198 Renibacterium salmoninarum 85021 2856 Intrasporangiaceae 27 family 9 0 1 0 1 8 genus 2 690 Serinicoccus 265976 1758689 Serinicoccus sp. JLT9 682 1 species 0 1 0 genus 31 2 774 Janibacter 53457 857417 Janibacter indicus 743 1 species 0 53357 720 Intrasporangium genus 11 2 1 0 709 Intrasporangium calvum 53358 0 species 1 267408 Arsenicicoccus 645 2 genus 7 1 0 1 no rank 0 2663846 638 0 species 1 638 Arsenicicoccus sp. oral taxon 190 1658671 0 1 11 family 11 4308 Dermabacteraceae 85020 Dermabacter 216 36739 0 1 2 3 genus species 1 0 1630135 213 Dermabacter vaginalis 264 Devriesea 472568 0 1 12 genus 2 472569 252 Devriesea agamarum species 1 0 Brachybacterium 3817 43668 1 0 6 genus 51 43669 Brachybacterium faecium 602 1 species 0 2017485 500 Brachybacterium sp. VR2415 species 1 0 1399 Brachybacterium sp. VM2412 2017484 0 species 1 0 1 species Brachybacterium ginsengisoli 611 1331682 654 2623841 0 no rank 1 Brachybacterium sp. P6-10-X1 654 1903186 0 1 species 19358 Microbacteriaceae 85023 1 0 family 169 49 447237 Frondihabitans 1375 2 genus 5 1 0 no rank 1 0 2626248 1370 1 species 0 1795630 Frondihabitans sp. PAMC 28766 1370 7261 Microbacterium 33882 0 1 125 genus 14 2033 599 Microbacterium testaceum species 1 0 162426 Microbacterium hominis 582 1 species 0 8 no rank 0 2609290 4414 1696072 502 Microbacterium sp. CGR1 species 1 0 1 species 0 2103230 Microbacterium sp. str. 'China' 475 species 1 0 1938334 548 Microbacterium sp. TPU 3598 1795053 Microbacterium sp. PAMC 28756 482 1 species 0 1916917 499 Microbacterium sp. 1.5R species 1 0 species 1 0 1906742 570 Microbacterium sp. BH-3-3-3 species 1 0 1714373 842 Microbacterium sp. No. 7 species 1 0 367477 496 Microbacterium sp. XT11 491 Microbacterium paludicola 300019 0 species 1 36805 Microbacterium aurum 533 1 species 0 1 species 0 84292 Microbacterium chocolatum 517 1434032 Pontimonas 165 2 7 genus 0 1 species 1 0 1159327 158 Pontimonas salivibrio 1 0 genus 32 4 1796 Curtobacterium 2034 0 1 species Curtobacterium pusillum 581 69373 257496 1183 2 no rank 0 1 species 0 1905847 Curtobacterium sp. BH-2-1-1 561 0 species 1 622 Curtobacterium sp. MR_MD2014 1561023 3 genus 13 1 0 69578 Cryobacterium 1006 670052 Cryobacterium arcticum 535 1 species 0 458 2649013 0 1 no rank 0 species 1 458 Cryobacterium sp. LW097 1978566 0 1 2 genus 3 793 Rathayibacter 33886 0 1 species Rathayibacter tritici 499 33888 0 1 species Rathayibacter toxicus 292 145458 1 0 2 genus 4 Microterricola 498 518733 412690 494 Microterricola viridarii species 1 0 343 1655488 0 no rank 3 3 clade 0 1655489 343 3 genus 8 1 0 529883 Rhodoluna 343 species 1 0 529884 155 Rhodoluna lacicola 1 species 0 535712 Candidatus Rhodoluna planktonica 180 6 65 genus 0 1 1573 Clavibacter 2656 28447 2591 Clavibacter michiganensis species 545 5 1 0 Clavibacter sepedonicus 514 31964 0 1 subspecies 0 1 subspecies Clavibacter nebraskensis 503 31963 538 Clavibacter capsici 1874630 0 subspecies 1 0 1 subspecies Clavibacter insidiosus 491 33014 0 genus 1 193 1705353 708131 Aurantimicrobium minutum 193 1 species 0 Cnuibacter 684 1759331 0 1 2 3 genus Cnuibacter physcomitrellae 681 1619308 0 1 species 0 1 4 genus 2 1242 Leifsonia 110932 1238 Leifsonia xyli 1575 0 species 1 genus 3 2 1 0 33877 787 Agromyces 1 species 0 453304 Agromyces aureus 784 337004 390 Microcella 2 genus 2 0 1 279828 Microcella alkaliphila 388 1 species 0 1 0 family 19 6 2816 Cellulomonadaceae 85016 2797 Cellulomonas 1707 0 1 37 genus 5 800 Cellulomonas fimi 1708 0 species 1 1 species 0 11 Cellulomonas gilvus 607 1 species 0 1711 Cellulomonas flavigena 730 no rank 1 0 2620175 623 0 1 species Cellulomonas sp. PSBB021 623 2003551 577468 188 2 no rank 0 1 0 2 genus 2 Tropheryma 188 2038 2039 Tropheryma whipplei 186 1 species 0 family 2 0 85022 167 1 0 genus 1 2 167 Jonesia 43673 0 1 species Jonesia denitrificans 166 43674 125316 Beutenbergiaceae 927 3 1 family 0 1 84756 926 Beutenbergia genus 13 2 1 0 species 1 0 84757 913 Beutenbergia cavernae 0 1 7 18 family Dermacoccaceae 1655 145357 1 0 2 genus 15 Luteipulveratus 681 745364 571913 666 Luteipulveratus mongoliensis species 1 0 580 Dermacoccus 57495 0 1 3 genus 2 1274 577 Dermacoccus nishinomiyaensis species 1 0 57499 376 Kytococcus genus 7 2 1 0 species 1 0 1276 369 Kytococcus sedentarius 1643684 819 Nakamurellales 2 order 4 0 1 85031 817 Nakamurellaceae 13 family 3 0 1 1 0 genus 12 2 804 Nakamurella 53460 0 1 species Nakamurella multipartita 792 53461 4 order 5 1 0 622450 Actinopolysporales 527 10 family 3 0 1 622451 522 Actinopolysporaceae 1 0 genus 6 2 512 Actinopolyspora 1849 Actinopolyspora erythraea 506 414996 0 1 species 2869 Geodermatophilales 1643682 1 0 order 5 8 85030 Geodermatophilaceae 2864 7 family 81 1 0 1 0 genus 8 2 887 Geodermatophilus 1860 0 1 species Geodermatophilus obscurus 879 1861 1 0 genus 10 2 1041 Modestobacter 88138 0 species 1 1031 Modestobacter marinus 477641 38501 855 Blastococcus genus 6 2 1 0 138336 849 Blastococcus saxobsidens species 1 0 12 order 26 1 0 2039638 Candidatus Nanopelagicales 4187 11 family 0 2162846 4161 622681 Candidatus Planktophila 2256 7 29 genus 0 1 species 1 0 1884914 402 Candidatus Planktophila dulcis 1884905 Candidatus Planktophila versatilis 414 1 species 0 326 Candidatus Planktophila vernalis 1884907 0 species 1 Candidatus Planktophila lacus 436 1884913 0 1 species 1 species 0 1884904 Candidatus Planktophila sulfonica 243 0 species 1 406 Candidatus Planktophila limnetica 573600 1 0 genus 16 4 1905 Candidatus Nanopelagicus 2039639 0 1 species Candidatus Nanopelagicus abundans 719 1884916 Candidatus Nanopelagicus limnes 629 1884634 0 1 species 1884915 Candidatus Nanopelagicus hibericus 541 1 species 0 20 order 25 1 0 85008 Micromonosporales 13789 19 family 141 1 0 28056 Micromonosporaceae 13764 6 genus 83 1 0 1865 Actinoplanes 6111 1 species 0 1866 Actinoplanes missouriensis 1216 2626549 3640 3 no rank 0 0 species 1 1264 Actinoplanes sp. N902-109 649831 1 species 0 2033844 Actinoplanes sp. SE50 1188 0 species 1 1188 Actinoplanes sp. SE50/110 134676 0 1 species Actinoplanes friuliensis 1172 196914 3055 Micromonospora 1873 1 0 genus 36 4 1 no rank 0 2617518 1078 species 1 0 648999 1078 Micromonospora sp. L5 0 species 1 902 Verrucosispora maris 1003110 1 species 0 47850 Micromonospora aurantiaca 1039 1 genus 0 84593 Verrucosispora 7 genus 73 4 1 0 673534 3331 Plantactinospora no rank 3 0 2631981 3258 2024580 Plantactinospora sp. KBS50 991 1 species 0 2071627 Plantactinospora sp. BB1 1153 1 species 0 1114 Plantactinospora sp. BC1 2108470 0 species 1 Salinispora 1119 168694 0 1 3 22 genus Salinispora tropica 529 168695 0 1 species 568 Salinispora arenicola 168697 0 species 1 85013 5537 Frankiales order 39 7 1 0 Frankiaceae 5498 74712 1 0 6 family 55 1 0 genus 49 5 5443 Frankia 1854 1269 2632575 0 1 no rank 0 1 species Frankia sp. EAN1pec 1269 298653 0 species 1 841 Frankia casuarinae 106370 0 species 1 1882 Frankia alni 1859 298654 Frankia inefficax 1402 1 species 0 Pseudonocardiales 30186 85010 0 1 42 54 order 2070 30132 Pseudonocardiaceae 310 family 41 0 1 142577 817 Prauserella 9 genus 2 0 1 1 species 0 530584 Prauserella marina 808 1813 Amycolatopsis 7717 7 genus 102 1 0 31958 1975 Amycolatopsis orientalis species 1 0 0 1 species Amycolatopsis methanolica 1015 1814 1 species 0 33910 Amycolatopsis mediterranei 1422 2117 2618356 0 2 no rank species 1 0 1911175 1032 Amycolatopsis sp. BJA-103 1896961 1085 Amycolatopsis sp. AA4 species 1 0 0 species 1 1086 Amycolatopsis japonica 208439 2 18 genus 0 1 43356 Kutzneria 1110 species 1 0 43357 1092 Kutzneria albida 6 genus 64 1 0 65496 Actinoalloteichus 3892 2 no rank 0 2644606 1582 775 Actinoalloteichus sp. AHMU CJ021 2072503 0 species 1 1612551 807 Actinoalloteichus sp. GBA129-24 species 1 0 0 1 species Actinoalloteichus sp. ADI127-7 887 1612552 0 1 species Actinoalloteichus hoggarensis 791 1470176 0 species 1 568 Actinoalloteichus hymeniacidonis 340345 1304 Kibdelosporangium 2029 1 0 genus 6 2 species 1 0 860235 1298 Kibdelosporangium phytohabitans 2071 Saccharothrix 1181 2 7 genus 0 1 0 species 1 1174 Saccharothrix espanaensis 103731 1106 Saccharopolyspora 1835 1 0 genus 4 2 0 1 species Saccharopolyspora erythraea 1102 1836 1851 477 Saccharomonospora genus 2 2 1 0 species 1 0 1852 475 Saccharomonospora viridis Actinosynnema 2301 40566 0 1 3 30 genus Actinosynnema mirum 1142 40567 0 1 species 0 species 1 1129 Actinosynnema pretiosum 42197 7553 Pseudonocardia 1847 0 1 119 genus 8 6 no rank 0 2619320 6032 1074 Pseudonocardia sp. HH130630-07 1690815 0 species 1 1096868 Pseudonocardia sp. EC080625-04 947 1 species 0 0 1 species Pseudonocardia sp. HH130629-09 890 1641402 0 species 1 1048 Pseudonocardia sp. AL041005-10 445576 1096856 Pseudonocardia sp. EC080619-01 1018 1 species 0 0 species 1 1055 Pseudonocardia sp. EC080610-09 1688404 0 1 species Pseudonocardia dioxanivorans 1402 240495 5 genus 2 0 1 674734 930 Alloactinosynnema no rank 1 0 2636053 925 0 1 species Alloactinosynnema sp. L-07 925 1653480 1434 Lentzea 165301 1 0 genus 5 2 1586287 1429 Lentzea guizhouensis species 1 0 1643818 647 no rank 2 0 0 1 2 9 genus Thermobispora 647 147067 species 1 0 2006 638 Thermobispora bispora 0 1 54 order 33 11820 Propionibacteriales 85009 1 0 family 54 19 5495 Propionibacteriaceae 31957 1 0 genus 6 2 584 Microlunatus 29404 Microlunatus phosphovorus 578 29405 0 1 species 1 0 2 genus 5 Acidipropionibacterium 686 1912215 681 Acidipropionibacterium acidipropionici 1748 0 species 1 0 1 genus 294 2801844 1 species 0 1750 Pseudopropionibacterium propionicum 294 genus 1 0 203133 156 no rank 1 0 2633994 156 1871034 Propionimicrobium sp. Marseille-P3275 156 1 species 0 72763 Tessaracoccus 2068 5 genus 20 1 0 Tessaracoccus flavescens 430 399497 0 1 species 1332264 Tessaracoccus aquimaris 588 1 species 0 Tessaracoccus flavus 445 1610493 0 1 species 2635419 585 no rank 1 0 0 species 1 585 Tessaracoccus sp. T2.5-30 1909732 1743 Propionibacterium 779 3 5 genus 0 1 no rank 1 0 2608905 145 1 species 0 671223 Propionibacterium sp. oral taxon 193 145 Propionibacterium freudenreichii 629 1744 0 1 species 874 Cutibacterium 1912216 1 0 genus 7 4 0 species 1 345 Cutibacterium avidum 33010 1747 Cutibacterium acnes 275 1 species 0 species 1 0 33011 247 Cutibacterium granulosum 6271 Nocardioidaceae 85015 0 1 96 family 13 genus 6 2 1 0 116071 532 Micropruina 526 Micropruina glycogenica 75385 0 species 1 genus 8 2 1 0 2040 721 Aeromicrobium 713 Aeromicrobium erythreum 2041 0 species 1 genus 44 2 1 0 182639 1059 Kribbella 182640 Kribbella flavida 1015 1 species 0 1262 Pimelobacter 2044 0 1 5 genus 2 2045 Pimelobacter simplex 1257 1 species 0 2601 Nocardioides 1839 1 0 genus 69 4 1 species 0 450734 Nocardioides dokdonensis 910 581 Nocardioides sp. 78 2045452 0 species 1 1 no rank 0 2615069 1041 196162 Nocardioides sp. JS614 1041 1 species 0 0 1 35 order 16 7630 Streptosporangiales 85012 0 1 7 28 family Nocardiopsaceae 3117 83676 Nocardiopsis 2641 2013 1 0 4 genus 36 1017 Nocardiopsis dassonvillei 2014 0 species 1 53437 Nocardiopsis alba 771 1 species 0 1 species 0 280236 Nocardiopsis gilva 817 448 Thermobifida 83677 1 0 genus 5 2 2021 Thermobifida fusca 443 1 species 0 Streptosporangiaceae 3635 2004 1 0 5 family 35 1 0 genus 29 2 2152 Nonomuraea 83681 no rank 1 0 2593643 2123 0 species 1 2123 Nonomuraea sp. ATCC 55076 1909395 1448 Streptosporangium 2000 1 0 genus 10 2 1 species 0 2001 Streptosporangium roseum 1438 Thermomonosporaceae 843 2012 1 0 3 family 7 0 1 2 9 genus Thermomonospora 836 2019 0 1 species Thermomonospora curvata 827 2020 398 52018 0 1 no rank 0 1 species Actinobacteria bacterium IMCC26256 398 1650658 2037 3867 Actinomycetales order 8 19 1 0 3859 Actinomycetaceae 2049 1 0 family 31 18 1653174 177 1 genus 0 0 species 1 177 Actinotignum schaalii 59505 Mobiluncus 203 2050 0 1 2 1 genus 2051 Mobiluncus curtisii 202 1 species 0 0 1 2 6 genus Trueperella 273 1069494 species 1 0 1661 267 Trueperella pyogenes 9 51 genus 0 1 1654 Actinomyces 2781 1 species 0 1912795 Actinomyces sp. VUL4_3 111 316 Actinomyces gaoshouyii 1960083 0 species 1 2609248 1230 no rank 3 0 species 1 0 712122 492 Actinomyces sp. oral taxon 414 1851395 392 Actinomyces sp. Chiba101 species 1 0 2081702 Actinomyces sp. oral taxon 897 346 1 species 0 species 1 0 1852377 156 Actinomyces pacaensis 1 species 0 111015 Actinomyces radicidentis 580 544580 337 Actinomyces oris species 1 0 genus 2 2 1 0 28263 185 Arcanobacterium Arcanobacterium haemolyticum 183 28264 0 1 species 2529408 209 1 genus 0 209 Actinomyces meyeri 52773 0 species 1 935 Glycomycetales 85014 0 1 1 order 4 1 0 3 family 20 Glycomycetaceae 934 85034 283810 Stackebrandtia 914 2 genus 8 1 0 283811 906 Stackebrandtia nassauensis species 1 0 1 0 163 order 411 Corynebacteriales 78938 85007 1 0 family 46 52 13698 Corynebacteriaceae 1653 1 0 genus 202 51 13652 Corynebacterium 1716 0 1 species Corynebacterium diphtheriae 276 1717 1 species 0 1231000 Corynebacterium lactis 184 1 species 0 401472 Corynebacterium ureicelerivorans 207 1 species 0 1121358 Corynebacterium doosanense 327 species 1 0 38289 333 Corynebacterium jeikeium 0 species 1 190 Corynebacterium simulans 146827 0 species 1 148 Corynebacterium epidermidicanis 1050174 0 1 species Corynebacterium kroppenstedtii 122 161879 0 species 1 387 Corynebacterium variabile 1727 Corynebacterium aquilae 269 203263 0 1 species species 1 0 92706 189 [Brevibacterium] flavum 0 species 1 379 Corynebacterium vitaeruminis 38305 0 1 species Corynebacterium humireducens 408 1223514 Corynebacterium resistens 153 258224 0 1 species 341 Corynebacterium terpenotabidum 89154 0 species 1 0 1 species Corynebacterium pseudotuberculosis 234 1719 191493 Corynebacterium sphenisci 389 1 species 0 0 species 1 333 Corynebacterium striatum 43770 Corynebacterium cystitidis 243 35757 0 1 species species 1 0 43771 270 Corynebacterium urealyticum 1 species 0 160386 Corynebacterium casei 188 108486 266 Corynebacterium falsenii species 1 0 0 1 species Corynebacterium ammoniagenes 166 1697 species 1 0 1718 528 Corynebacterium glutamicum 35755 Corynebacterium kutscheri 214 1 species 0 0 1 species Corynebacterium glaucum 253 187491 0 species 1 171 Corynebacterium singulare 161899 404 Corynebacterium maris 575200 0 species 1 28028 188 Corynebacterium flavescens species 1 0 Corynebacterium argentoratense 196 42817 0 1 species 0 species 1 137 Corynebacterium camporealensis 161896 1 species 0 1404244 Corynebacterium glyciniphilum 299 0 1 species Corynebacterium efficiens 225 152794 1230998 489 Corynebacterium frankenforstense species 1 0 0 1 species Corynebacterium stationis 204 1705 0 1 species Corynebacterium marinum 355 349751 65058 Corynebacterium ulcerans 225 1 species 0 1093 Corynebacterium uterequi 1072256 0 species 1 1 species 0 136857 Corynebacterium testudinoris 240 0 species 1 216 Corynebacterium imitans 156978 species 1 0 1408191 196 Corynebacterium deserti 1 species 0 225326 Corynebacterium halotolerans 340 0 species 1 159 Corynebacterium phocae 161895 169292 172 Corynebacterium aurimucosum species 1 0 species 1 0 571915 196 Corynebacterium mustelae 188 Corynebacterium crudilactis 1652495 0 species 1 0 2 no rank 386 2624378 1487956 Corynebacterium sp. ATCC 6931 153 1 species 0 702967 Corynebacterium sp. NML98-0116 233 1 species 0 species 1 0 191610 213 Corynebacterium atypicum 1721 161 Corynebacterium callunae species 1 0 1 0 4 family 10 Dietziaceae 999 85029 genus 7 3 1 0 37914 989 Dietzia 499555 388 Dietzia timorensis species 1 0 1 no rank 0 2617939 594 species 1 0 712270 594 Dietzia sp. oral taxon 368 192 697024 0 2 no rank 1847725 192 Lawsonella genus 2 2 1 0 1 species 0 1528099 Lawsonella clevelandensis 190 57 family 90 1 0 1762 Mycobacteriaceae 34160 0 genus 2 1103 1073531 0 1 species Mycobacterium terrae 561 1788 species 1 0 875328 542 Mycobacterium sinense Hoyosella 319 697025 1 0 2 genus 1 Hoyosella subflava 318 639313 0 1 species 10021 1866885 0 13 genus 1795 583 Mycobacterium neoaurum species 1 0 758802 697 Mycobacterium litorale species 1 0 0 species 1 659 Mycobacterium thermoresistibile 1797 0 species 1 862 Mycobacterium smegmatis 1772 808 Mycobacterium goodii 134601 0 species 1 0 1 species Mycobacterium fortuitum 581 1766 Mycobacterium phlei 868 1771 0 1 species 1 species 0 36814 Mycobacterium rhodesiae 646 0 1 species Mycobacterium aurum 832 1791 1 species 0 1804 Mycobacterium gilvum 1001 1 species 0 1810 Mycobacterium vaccae 876 110539 Mycobacterium vanbaalenii 823 1 species 0 species 1 0 1800 785 Mycobacterium chubuense 1763 19131 Mycobacterium genus 1064 34 1 0 0 4 species group 1464 77643 0 1 391 species 3 1137 Mycobacterium tuberculosis 1773 368 Mycobacterium africanum 33894 0 biotype 1 0 biotype 1 378 Mycobacterium bovis 1765 78331 327 Mycobacterium canettii species 1 0 29311 351 Mycobacterium haemophilum species 1 0 13 no rank 0 2642494 7773 0 1 species Mycobacterium sp. NRRL B-3805 583 1570328 Mycobacterium sp. YC-RL4 629 1682113 0 1 species Mycobacterium sp. JS623 859 212767 0 1 species 1 species 0 1879023 Mycobacterium sp. djl-10 679 Mycobacterium sp. KMS 658 189918 0 1 species 0 species 1 664 Mycobacterium sp. PYR15 2051552 species 1 0 1545728 619 Mycobacterium sp. EPa45 688 Mycobacterium sp. JLS 164757 0 species 1 species 1 0 1920667 621 Mycobacterium sp. WY10 0 species 1 337 Mycobacterium sp. QIA-37 1561223 1 species 0 1168287 Mycobacterium sp. MOTT36Y 218 164756 Mycobacterium sp. MCS 639 1 species 0 0 species 1 579 Mycobacterium sp. VKM Ac-1817D 1273687 0 1 species Mycobacterium ulcerans 532 1809 1781 792 Mycobacterium marinum species 1 0 0 8 species group 4503 120793 species 1 0 701042 428 Mycobacterium marseillense 339268 Mycobacterium colombiense 622 1 species 0 1138383 212 Mycobacterium paraintracellulare species 1 0 0 1 species Mycobacterium avium 1773 1764 1767 1468 Mycobacterium intracellulare 375 species 4 0 1 561 Mycobacterium chimaera 222805 0 subspecies 1 Mycobacterium yongonense 278 1203599 0 1 subspecies 0 1 subspecies Mycobacterium indicus pranii 254 35617 561 2249310 0 species group 1 722731 561 Mycobacterium shigaense species 1 0 0 1 species Mycobacterium dioxanotrophicus 790 482462 0 1 species Mycobacterium leprae 144 1769 0 species 1 624 Mycobacterium kansasii 1768 261524 533 Mycobacterium liflandii species 1 0 5 genus 0 670516 3496 1774 400 Mycobacterium chelonae species 1 0 0 species 1 338 Mycobacterium stephanolepidis 1520670 1578165 335 Mycobacterium saopaulense species 1 0 0 species 1 410 Mycobacterium immunogenum 83262 36809 2013 Mycobacterium abscessus species 1 0 4 9 family 0 1 85028 Tsukamurellaceae 1433 3 genus 17 1 0 2060 Tsukamurella 1424 0 species 1 554 Tsukamurella paurometabola 2061 1 species 0 57704 Tsukamurella tyrosinosolvens 853 1 0 family 19 9 4562 Gordoniaceae 85026 2053 4543 Gordonia genus 41 8 1 0 Gordonia iterans 634 1004901 0 1 species 0 1 species Gordonia bronchialis 615 2054 723 Gordonia terrae 2055 0 species 1 2657482 1196 2 no rank 0 2059875 Gordonia sp. YC-JH1 515 1 species 0 0 species 1 681 Gordonia sp. KTR9 337191 species 1 0 84595 710 Gordonia polyisoprenivorans 1136941 Gordonia phthalatica 624 1 species 0 1 0 family 130 31 23140 Nocardiaceae 85025 16093 Rhodococcus 1827 1 0 genus 390 23 1 species 0 103816 Rhodococcus pyridinivorans 800 132919 Rhodococcus jostii 1040 1 species 0 0 1 species Rhodococcus aetherivorans 987 191292 species 1 0 1829 629 Rhodococcus rhodochrous 0 1 species Rhodococcus qingshengii 447 334542 Rhodococcus ruber 977 1830 0 1 species 37919 Rhodococcus opacus 2400 1 species 0 0 1 species Rhodococcus hoagii 751 43767 543 Rhodococcus fascians 1828 0 species 1 0 12 no rank 6361 192944 1 species 0 1564114 Rhodococcus sp. B7740 454 1653478 598 Rhodococcus sp. PBTS 1 species 1 0 Rhodococcus sp. 2G 569 1570939 0 1 species 408 Rhodococcus sp. PBTS 2 1653479 0 species 1 1 species 0 935199 Rhodococcus sp. p52 610 0 species 1 343 Rhodococcus sp. WMMA185 679318 1807790 370 Rhodococcus sp. BH4 species 1 0 0 1 species Rhodococcus sp. 008 392 1723645 species 1 0 1045808 420 Rhodococcus sp. YL-1 species 1 0 1033922 1020 Rhodococcus sp. WB1 Rhodococcus sp. H-CA8f 420 1727214 0 1 species species 1 0 1805827 757 Rhodococcus sp. MTM3W5.2 0 species 1 768 Rhodococcus erythropolis 1833 6917 Nocardia 1817 1 0 genus 95 7 0 species 1 826 Nocardia seriolae 37332 135487 1323 Nocardia cyriacigeorgica species 1 0 37329 1089 Nocardia farcinica species 1 0 0 1 species Nocardia brasiliensis 1829 37326 455432 Nocardia terpenica 913 1 species 0 0 1 species Nocardia nova 842 37330 1 0 family 1 3 343 Segniliparaceae 316606 2 genus 7 1 0 286801 Segniliparus 342 286802 335 Segniliparus rotundus species 1 0 1297 11099 phylum 36 0 188787 11099 Deinococci class 70 36 1 0 0 order 3 593 2762275 1 0 3 family 1 Trueperaceae 593 332247 0 1 2 7 genus Truepera 592 332248 332249 Truepera radiovictrix 585 1 species 0 44 order 17 0 1 68933 4601 Thermales 188786 4557 Thermaceae family 40 16 1 0 665 Oceanithermus 208447 1 0 genus 10 2 0 species 1 655 Oceanithermus profundus 187137 65551 Meiothermus 778 3 7 genus 0 1 0 1 species Meiothermus ruber 419 277 0 1 species Meiothermus silvanus 352 52022 2 6 genus 0 1 186191 Marinithermus 407 0 1 species Marinithermus hydrothermalis 401 186192 0 1 8 58 genus Thermus 2667 270 37636 Thermus scotoductus 225 1 species 0 56956 309 Thermus brockianus species 1 0 species 1 0 274 766 Thermus thermophilus 1 species 0 456163 Thermus parvatiensis 281 0 1 species Thermus aquaticus 347 271 381 Thermus oshimai 56957 0 species 1 300 2619321 0 no rank 1 300 Thermus sp. CCB_US3_UF1 1111069 0 species 1 Deinococcales 5835 118964 1 0 15 order 76 5759 Deinococcaceae 183710 1 0 family 31 14 90 genus 13 0 1 1298 5728 Deinococcus 1768108 520 Deinococcus actinosclerus species 1 0 1299 462 Deinococcus radiodurans species 1 0 1 species 0 55148 Deinococcus proteolyticus 437 species 1 0 309887 495 Deinococcus maricopensis 1 species 0 310783 Deinococcus deserti 285 1309411 532 Deinococcus soli Cha et al. 2016 species 1 0 406 Deinococcus geothermalis 68909 0 species 1 1 species 0 1182571 Deinococcus swuensis 519 0 species 1 699 Deinococcus gobiensis 502394 432329 476 Deinococcus peraridilitoris species 1 0 1 species 0 1182568 Deinococcus puniceus 337 2623546 470 1 no rank 0 species 1 0 2080419 470 Deinococcus sp. NW-56 1 0 phylum 109 709 385087 Firmicutes 1239 195 33974 0 no rank 1 genus 1 0 1930845 195 0 1 species Ndongobacter massiliensis 195 1871025 Bacilli 229580 91061 0 1 431 189 class order 357 264 1 0 1385 161950 Bacillales 0 no rank 8 2143 539002 539742 1513 7 no rank 0 33986 1513 Exiguobacterium genus 22 7 1 0 Exiguobacterium antarcticum 215 132920 0 1 species 1023 2644629 0 no rank 4 Exiguobacterium sp. AT1b 206 360911 0 1 species 1 species 0 1399115 Exiguobacterium sp. MH3 191 0 species 1 310 Exiguobacterium sp. ZWU0009 1224749 species 1 0 1849031 316 Exiguobacterium sp. U13-1 species 1 0 332410 253 Exiguobacterium sibiricum 539738 630 no rank 1 0 1 genus 0 1378 630 1 no rank 0 2624949 630 0 species 1 630 Gemella sp. oral taxon 928 1785995 0 1 9 6 family Listeriaceae 4951 186820 2755 Brochothrix 573 2 genus 6 1 0 1 species 0 2756 Brochothrix thermosphacta 567 6 genus 44 1 0 1637 Listeria 4372 536 Listeria seeligeri 1640 0 species 1 1 species 0 1639 Listeria monocytogenes 1733 1642 521 Listeria innocua species 1 0 0 1 species Listeria welshimeri 551 1643 0 1 species Listeria ivanovii 987 1638 186822 25988 Paenibacillaceae 51 family 46 0 1 2 7 genus 0 1 76632 Thermobacillus 558 species 1 0 377615 551 Thermobacillus composti 4 genus 13 1 0 55080 Brevibacillus 2276 0 1 species Brevibacillus laterosporus 1083 1465 1393 Brevibacillus brevis 718 1 species 0 54913 462 Brevibacillus formosus species 1 0 0 no rank 3 853 85151 0 1 10 genus 3 853 Aneurinibacillus 55079 436 2642329 0 no rank 1 1450761 436 Aneurinibacillus sp. XH2 species 1 0 0 species 1 407 Aneurinibacillus soli 1500254 Paenibacillus 22250 44249 1 0 36 genus 125 373 Paenibacillus kribbensis 172713 0 species 1 436 Paenibacillus borealis 160799 0 species 1 528191 350 Paenibacillus xylanexedens species 1 0 0 1 species Paenibacillus stellifer 312 169760 1406 2785 Paenibacillus polymyxa species 1 0 503 Paenibacillus crassostreae 1763538 0 species 1 0 13 no rank 8155 185978 species 1 0 1870819 604 Paenibacillus sp. BIHB4019 0 1 species Paenibacillus sp. lzh-N1 374 2069255 384 Paenibacillus sp. JDR-2 324057 0 species 1 1536773 402 Paenibacillus sp. FSL R7-0331 species 1 0 0 species 1 475 Paenibacillus sp. 32O-W 1695218 0 1 species Paenibacillus sp. IHBB 10380 2040 1566358 species 1 0 1536769 720 Paenibacillus sp. FSL P4-0081 0 1 species Paenibacillus sp. FSL H7-0737 511 1536775 1 species 0 1536774 Paenibacillus sp. FSL H7-0357 523 1 species 0 1536771 Paenibacillus sp. FSL R5-0912 464 Paenibacillus sp. Y412MC10 388 481743 0 1 species 0 1 species Paenibacillus sp. FSL R7-0273 427 1536772 1536770 Paenibacillus sp. FSL R5-0345 843 1 species 0 1616788 674 Paenibacillus bovis species 1 0 1126833 438 Paenibacillus beijingensis species 1 0 189425 Paenibacillus graminis 580 1 species 0 189426 Paenibacillus odorifer 618 1 species 0 2044880 424 1 species group 0 483937 424 Paenibacillus riograndensis species 1 0 0 1 species Paenibacillus swuensis 330 1178515 394 Paenibacillus naphthalenovorans 162209 0 species 1 1 species 0 61624 Paenibacillus mucilaginosus 889 0 1 species Paenibacillus sabinae 347 365617 414771 1269 Paenibacillus donghaensis species 1 0 858 Paenibacillus durus 44251 0 species 1 species 1 0 1462996 317 Paenibacillus yonginensis 1 species 0 1464 Paenibacillus larvae 651 0 species 1 377 Paenibacillus terrae 159743 1 species 0 1870820 Paenibacillus ihbetae 456 0 1 species Paenibacillus peoriae 589 59893 0 1 2 1 family Sporolactobacillaceae 353 186821 352 663587 0 1 no rank [Bacillus] selenitireducens 352 85683 0 1 species 11122 Planococcaceae 186818 0 1 32 family 27 532 Jeotgalibacillus 157226 1 0 genus 4 2 1508404 528 Jeotgalibacillus malaysiensis species 1 0 Sporosarcina 2607 1569 1 0 5 genus 19 0 no rank 2 569 2647733 Sporosarcina sp. P33 287 1930764 0 1 species 282 Sporosarcina sp. P37 1930546 0 species 1 0 species 1 644 Sporosarcina psychrophila 1476 Sporosarcina ureae 1375 1571 0 1 species 0 1 2 2 genus Kurthia 582 1649 580 2644826 0 1 no rank Kurthia sp. 11kri321 580 1750719 0 1 species 2 1 genus 0 1 648802 Rummeliibacillus 522 521 Rummeliibacillus stabekisii 241244 0 species 1 Solibacillus 1533 648800 0 1 3 6 genus no rank 1 0 2637870 764 764 Solibacillus sp. R5-41 2048654 0 species 1 0 1 species Solibacillus silvestris 763 76853 5314 Planococcus 1372 0 1 63 genus 12 species 1 0 1302659 594 Planococcus sp. L10.15 1215089 636 Planococcus halocryophilus species 1 0 0 species 1 368 Planococcus antarcticus 161360 Planococcus plakortidis 238 1038856 0 1 species species 1 0 192421 597 Planococcus maritimus 200991 Planococcus rifietoensis 350 1 species 0 1598147 Planococcus faecalis 596 1 species 0 0 no rank 2 810 2662419 1 species 0 2058136 Planococcus sp. MB-3u-03 336 species 1 0 1526927 474 Planococcus sp. PAMC 21323 538 Planococcus kocurii 1374 0 species 1 0 1 species Planococcus donghaensis 524 414778 4 family 3 1 0 186824 Thermoactinomycetaceae 299 1 genus 0 292635 Laceyella 3 1677050 Novibacillus 293 2 genus 1 1 0 0 species 1 292 Novibacillus thermophilus 1471761 42 56 family 0 1 90964 Staphylococcaceae 29647 2 2 genus 0 1 2005363 Auricoccucs 537 1849491 535 Auricoccus indicus species 1 0 69965 Macrococcus 1536 4 18 genus 0 1 species 1 0 69966 515 Macrococcus caseolyticus 586 2619255 0 no rank 1 586 Macrococcus sp. IME1552 1898474 0 species 1 1 species 0 1855823 Macrococcus canis 417 1 0 2 genus 1 Salinicoccus 258 45669 407035 257 Salinicoccus halodurans species 1 0 1279 27260 Staphylococcus genus 208 33 1 0 45972 Staphylococcus pasteuri 1846 1 species 0 0 species 1 702 Staphylococcus succinus 61015 70258 Staphylococcus piscifermentans 437 1 species 0 1282 Staphylococcus epidermidis 1472 1 species 0 0 species 1 563 Staphylococcus simulans 1286 492 Staphylococcus agnetis 985762 0 species 1 0 1 species Staphylococcus muscae 375 1294 155085 Staphylococcus lutrae 505 1 species 0 0 species 1 826 Staphylococcus argenteus 985002 1296 981 Staphylococcus sciuri species 1 0 1292 Staphylococcus warneri 689 1 species 0 1 species 0 170573 Staphylococcus pettenkoferi 293 Staphylococcus schleiferi 674 1295 0 1 species 1 species 0 1281 Staphylococcus carnosus 686 0 1 species Staphylococcus nepalensis 778 214473 1 species 0 1284 Staphylococcus hyicus 510 1290 870 Staphylococcus hominis species 1 0 Staphylococcus saprophyticus 794 29385 0 1 species 29382 781 Staphylococcus cohnii species 1 0 0 1 species Staphylococcus condimenti 674 70255 648 Staphylococcus pseudintermedius 283734 0 species 1 29388 822 Staphylococcus capitis species 1 0 772 91994 0 no rank 1 0 1 species Staphylococcus sp. AntiMn-1 772 1715860 643214 Staphylococcus stepanovicii 810 1 species 0 1288 1391 Staphylococcus xylosus species 1 0 1 species 0 1280 Staphylococcus aureus 2797 species 1 0 1283 929 Staphylococcus haemolyticus 715 Staphylococcus lugdunensis 28035 0 species 1 662 Staphylococcus kloosii 29384 0 species 1 Staphylococcus felis 486 46127 0 1 species species 1 0 308354 857 Staphylococcus simiae species 1 0 246432 1215 Staphylococcus equorum 0 1 9 14 family Alicyclobacillaceae 2242 186823 2 genus 4 1 0 29330 Alicyclobacillus 561 557 Alicyclobacillus acidocaldarius 405212 0 species 1 703 Kyrpidia 1129704 0 1 5 genus 3 0 species 1 326 Kyrpidia sp. EA-1 2055160 Kyrpidia tusciae 372 33943 0 1 species Tumebacillus 964 432330 1 0 3 genus 22 1214604 Tumebacillus algifaecis 351 1 species 0 0 1 species Tumebacillus avium 591 1903704 Bacillaceae 84848 186817 0 1 116 166 family 304 Salimicrobium 351195 1 0 genus 4 2 1230341 300 Salimicrobium jeotgali species 1 0 15 254 genus 0 1 129337 Geobacillus 5118 1 species 0 129338 Geobacillus subterraneus 332 33940 457 Geobacillus thermodenitrificans species 1 0 0 4 species group 1429 1505648 169283 Geobacillus lituanicus 261 1 species 0 0 species 1 236 Geobacillus kaustophilus 1462 33938 Geobacillus thermocatenulatus 293 1 species 0 0 species 1 639 Geobacillus thermoleovorans 33941 6 no rank 0 2642459 1839 558 Geobacillus sp. WCH70 471223 0 species 1 species 1 0 1233873 138 Geobacillus sp. GHH01 544556 Geobacillus sp. Y412MC61 168 1 species 0 0 species 1 489 Geobacillus sp. Y4.1MC1 581103 Geobacillus sp. C56-T3 336 691437 0 1 species 550542 150 Geobacillus sp. Y412MC52 species 1 0 1921421 305 Geobacillus genomosp. 3 species 1 0 0 1 species Geobacillus stearothermophilus 502 1422 3 genus 7 1 0 1329200 Fictibacillus 1061 1 species 0 255247 Fictibacillus arsenicus 512 Fictibacillus phosphorivorans 542 1221500 0 1 species genus 1 0 459532 369 0 1 species Terribacillus aidingensis 369 586416 915 Halobacillus 45667 0 1 8 genus 3 488 Halobacillus mangrovi 402384 0 species 1 Halobacillus halophilus 419 1570 0 1 species 0 1 15 genus 5 4660 Lysinibacillus 400634 834 2636778 0 1 no rank 0 1 species Lysinibacillus sp. YS11 834 2072025 1 species 0 1421 Lysinibacillus sphaericus 2257 763 Lysinibacillus fusiformis 28031 0 species 1 Lysinibacillus varians 791 1145276 0 1 species 150247 3268 Anoxybacillus 27 genus 6 0 1 294699 658 Anoxybacillus amylolyticus species 1 0 Anoxybacillus flavithermus 887 33934 0 1 species 0 1 species Anoxybacillus gonensis 538 198467 0 2 no rank 1158 2639704 1490057 590 Anoxybacillus sp. B7M1 species 1 0 1490052 568 Anoxybacillus sp. B2M1 species 1 0 590 1055323 0 genus 1 0 species 1 590 Aeribacillus pallidus 33936 0 1 genus 1624 182709 182710 Oceanobacillus iheyensis 1624 1 species 0 84406 Virgibacillus 4605 7 genus 17 1 0 species 1 0 1473 866 Virgibacillus pantothenticus 0 no rank 2 1525 2620237 1 species 0 403957 Virgibacillus sp. SK37 732 Virgibacillus sp. 6R 793 1911587 0 1 species 163877 Virgibacillus necropolis 822 1 species 0 Virgibacillus halodenitrificans 732 1482 0 1 species species 1 0 2017483 643 Virgibacillus phasianinus 386 Lentibacillus 175304 1 0 genus 1 2 Lentibacillus amyloliquefaciens 385 1472767 0 1 species 1868 2675229 0 genus 2 1 species 0 264697 Bacillus muralis 444 1 species 0 1478 Bacillus simplex 1424 58 1072 genus 0 1 1386 Bacillus 53408 Bacillus weihaiensis 848 1547283 0 1 species 1 species 0 412384 Bacillus aryabhattai 763 86661 24440 10 species group 0 0 species 1 8299 Bacillus cereus 1396 1428 Bacillus thuringiensis 8379 1 species 0 735 Bacillus cytotoxicus 580165 0 species 1 Bacillus toyonensis 635 155322 0 1 species 0 1 species Bacillus anthracis 917 1392 0 species 1 2798 Bacillus mycoides 1405 3 no rank 0 2750818 1881 1839798 823 Bacillus sp. FDAARGOS_235 species 1 0 2053832 Bacillus sp. HBCD-sjtu 521 1 species 0 Bacillus sp. ABP14 537 1892404 0 1 species Bacillus bombysepticus 796 658666 0 1 species 1408 1938 Bacillus pumilus species 1 0 0 9 species group 6694 653685 0 1 species Bacillus paralicheniformis 409 1648923 species 1 0 1452 691 Bacillus atrophaeus 1 species 0 72361 Bacillus vallismortis 95 1423 2598 Bacillus subtilis species 1 0 3 species subgroup 0 1938374 1917 species 1 0 492670 888 Bacillus velezensis 198 Bacillus siamensis 659243 0 species 1 1390 831 Bacillus amyloliquefaciens species 1 0 1402 541 Bacillus licheniformis species 1 0 0 1 species Bacillus sonorensis 443 119858 561879 Bacillus safensis 943 1 species 0 0 species 1 99 Bacillus gibsonii 79881 1203 Bacillus cohnii 33932 0 species 1 0 1 species Bacillus smithii 444 1479 1 species 0 1664069 Bacillus glycinifermentans 617 0 species 1 413 Bacillus horikoshii 79883 1 species 0 632773 Bacillus beveridgei 295 0 species 1 396 Bacillus infantis 324767 86664 Bacillus flexus 815 1 species 0 0 1 species Bacillus methanolicus 898 1471 Bacillus endophyticus 1091 135735 0 1 species 1413 962 Bacillus cellulosilyticus species 1 0 397 Bacillus xiamenensis 1178537 0 species 1 no rank 19 0 185979 5146 0 species 1 65 Bacillus sp. Lzh-5 2049935 1774743 208 Bacillus sp. SDLI1 species 1 0 0 species 1 720 Bacillus sp. IHB B 7164 1827146 0 1 species Bacillus sp. 1s-1 250 2026248 1 species 0 1628753 Bacillus sp. LM 4-2 92 1 species 0 756828 Bacillus sp. WP8 457 140 Bacillus sp. Pc3 1446792 0 species 1 313 Bacillus sp. OxB-1 98228 0 species 1 93 Bacillus sp. (in: Bacteria) 1409 0 species 1 158 Bacillus sp. JS 1127744 0 species 1 0 species 1 108 Bacillus sp. YP1 1574141 0 1 species Bacillus sp. FJAT-14266 255 1837130 Bacillus sp. H15-1 249 1856406 0 1 species Bacillus sp. SJ-10 142 563169 0 1 species species 1 0 666686 841 Bacillus sp. 1NLA3E 0 1 species Bacillus sp. MD-5 181 2009331 Bacillus sp. X1(2014) 677 1565991 0 1 species 0 1 species Bacillus sp. 275 144 1941347 species 1 0 1570330 53 Bacillus sp. BH072 2705 Bacillus megaterium 1404 0 species 1 0 1 species group 483 1792192 293387 483 Bacillus altitudinis species 1 0 1 species 0 1398 Bacillus coagulans 746 3508 2675234 0 5 genus 0 1 species Bacillus clausii 783 79880 1 species 0 79885 Bacillus pseudofirmus 656 86665 395 Bacillus halodurans species 1 0 species 1 0 300825 722 Bacillus lehensis 952 Bacillus krulwichiae 199441 0 species 1 0 genus 2 1759 2675230 665099 Bacillus oceanisediminis 683 1 species 0 859143 Bacillus kochii 1076 1 species 0 645 29331 0 1 genus 1449 Amphibacillus xylanus 645 1 species 0 1906945 594 genus 1 0 594 Parageobacillus thermoglucosidasius 1426 0 species 1 1 0 166 order 169 Lactobacillales 67441 186826 0 no rank 1 545 263855 1993866 Lactobacillales bacterium 545 1 species 0 0 1 7 family 18 5125 Leuconostocaceae 81850 46255 Weissella 1413 6 12 genus 0 1 398 Weissella koreensis 165096 0 species 1 0 species 1 190 Weissella ceti 759620 1249 291 Weissella paramesenteroides species 1 0 282 Weissella jogaejeotgali 1631871 0 species 1 240 Weissella cibaria 137591 0 species 1 46254 Oenococcus 373 2 genus 1 1 0 1 species 0 1247 Oenococcus oeni 372 1243 3332 Leuconostoc genus 29 9 1 0 no rank 1 0 2685106 305 979982 305 Leuconostoc sp. C2 species 1 0 287 Leuconostoc citreum 33964 0 species 1 0 species 1 840 Leuconostoc mesenteroides 1245 Leuconostoc kimchii 279 136609 0 1 species 1252 Leuconostoc carnosum 429 1 species 0 1 species 0 1244 Leuconostoc gelidum 773 1 species 0 255248 Leuconostoc garlicum 193 species 1 0 1246 197 Leuconostoc lactis 1 0 family 12 11 4483 Carnobacteriaceae 186828 1 genus 3 0 1 1470540 866 Jeotgalibaca 708126 Jeotgalibaca dankookensis 374 1 species 0 0 no rank 1 491 2621505 1903686 Jeotgalibaca sp. PTS2502 491 1 species 0 2804 Carnobacterium 2747 1 0 genus 18 5 257487 1075 2 no rank 0 0 1 species Carnobacterium sp. 17-4 666 208596 409 Carnobacterium sp. CP1 1564681 0 species 1 0 species 1 1073 Carnobacterium maltaromaticum 2751 0 species 1 638 Carnobacterium inhibens 147709 2 genus 3 1 0 191769 Marinilactibacillus 801 0 no rank 1 798 2632303 0 1 species Marinilactibacillus sp. 15R 798 1911586 186827 Aerococcaceae 1945 8 family 9 1 0 1375 1936 Aerococcus genus 22 7 1 0 1 species 0 1377 Aerococcus viridans 342 0 species 1 204 Aerococcus sanguinicola 119206 1 species 0 87541 Aerococcus christensenii 323 0 species 1 377 Aerococcus urinae 1376 species 1 0 128944 228 Aerococcus urinaehominis 1 species 0 51665 Aerococcus urinaeequi 440 0 1 58 59 family Lactobacillaceae 24556 33958 2767887 2039 genus 4 0 1601 197 Lactobacillus agilis species 1 0 species 1 0 1624 1315 Lactobacillus salivarius species 1 0 89059 319 Lactobacillus acidipiscis species 1 0 1623 208 Lactobacillus ruminis 300 2767892 0 genus 1 Lactobacillus paracollinoides 300 240427 0 1 species 0 2 genus 940 2767885 0 1 species Lactobacillus sakei 553 1599 1 species 0 28038 Lactobacillus curvatus 387 2751 2767879 0 genus 6 1847728 Lactobacillus allii 519 1 species 0 405 Lactobacillus farciminis 1612 0 species 1 1 species 0 1602 Lactobacillus alimentarius 463 1 species 0 1007676 Lactobacillus ginsenosidimutans 457 1 species 0 392416 Lactobacillus crustorum 515 1 species 0 1074467 Lactobacillus heilongjiangensis 392 0 genus 3 1762 2767842 60520 237 Lactobacillus paraplantarum species 1 0 1589 Lactobacillus pentosus 285 1 species 0 0 species 1 1240 Lactobacillus plantarum 1590 161 2767876 0 1 genus 1603 161 Lactobacillus amylophilus species 1 0 genus 3 0 2742598 1511 97478 267 Lactobacillus mucosae species 1 0 0 species 1 969 Lactobacillus reuteri 1598 Lactobacillus fermentum 275 1613 0 1 species 3 genus 0 2767893 801 Lactobacillus parabuchneri 224 152331 0 1 species 0 species 1 276 Lactobacillus buchneri 1581 Lactobacillus curieae 301 1138822 0 1 species 812 2767889 0 2 genus 1610 Lactobacillus coryniformis 352 1 species 0 460 Lactobacillus backii 375175 0 species 1 genus 2 0 2767881 932 0 1 species Lactobacillus lindneri 494 53444 Lactobacillus sanfranciscensis 438 1625 0 1 species Pediococcus 2159 1253 0 1 6 15 genus 361 Pediococcus inopinatus 114090 0 species 1 1 species 0 1255 Pediococcus pentosaceus 661 Pediococcus claussenii 459 187452 0 1 species 1670797 283 species group 1 0 1254 283 Pediococcus acidilactici species 1 0 1 species 0 51663 Pediococcus damnosus 380 2767886 564 genus 3 0 1 species 0 267363 Lactobacillus zymae 114 1 species 0 637971 Lactobacillus koreensis 119 331 Lactobacillus brevis 1580 0 species 1 2767877 253 genus 1 0 0 species 1 253 Lactobacillus kunkeei 148814 2759736 1701 3 genus 0 532 Lactobacillus rhamnosus 47715 0 species 1 671 Lactobacillus casei 1582 0 species 1 1597 Lactobacillus paracasei 498 1 species 0 0 1 208 genus 16 7434 Lactobacillus 1578 species 1 0 33959 994 Lactobacillus johnsonii species 1 0 1600 317 Lactobacillus acetotolerans 876 Lactobacillus gasseri 1596 0 species 1 0 1 species Lactobacillus jensenii 456 109790 Lactobacillus delbrueckii 777 1584 0 1 species 4 no rank 0 2620435 1172 1 species 0 2099788 Lactobacillus sp. CBA3605 298 0 species 1 206 Lactobacillus sp. D1501 2108362 0 1 species Lactobacillus sp. wkB8 448 1545702 0 1 species Lactobacillus sp. CBA3606 220 2099789 0 species 1 405 Lactobacillus acidophilus 1579 Lactobacillus gallinarum 332 52242 0 1 species Lactobacillus helveticus 822 1587 0 1 species Lactobacillus kefiranofaciens 352 267818 0 1 species 1604 456 Lactobacillus amylovorus species 1 0 0 1 species Lactobacillus amylolyticus 267 83683 377 2767890 0 genus 1 1 species 0 1193095 Lactobacillus hokkaidonensis 377 81852 Enterococcaceae 8781 20 16 family 0 1 1 0 3 genus 8 Vagococcus 1183 2737 Vagococcus teuberi 582 519472 0 1 species species 1 0 633807 593 Vagococcus penaei genus 52 12 1 0 1350 6005 Enterococcus 37734 Enterococcus casseliflavus 341 1 species 0 1021 Enterococcus faecium 1352 0 species 1 2608891 1036 no rank 3 0 Enterococcus sp. CR-Ec1 346 2057791 0 1 species 0 species 1 335 Enterococcus sp. FDAARGOS_375 2060307 0 1 species Enterococcus sp. FDAARGOS_163 355 2060306 Enterococcus thailandicus 544 417368 0 1 species 0 1 species Enterococcus hirae 593 1354 1 species 0 2005703 Enterococcus wangshanyuanii 502 1 species 0 53346 Enterococcus mundtii 513 1351 Enterococcus faecalis 943 1 species 0 460 Enterococcus durans 53345 0 species 1 2 genus 5 1 0 51668 Tetragenococcus 748 species 1 0 51669 743 Tetragenococcus halophilus 33969 829 Melissococcus 3 genus 2 0 1 0 species 1 826 Melissococcus plutonius 33970 1300 Streptococcaceae 21837 49 40 family 0 1 0 1 5 5 genus Lactococcus 4349 1357 0 1 species Lactococcus garvieae 629 1363 0 species 1 2853 Lactococcus lactis 1358 1 species 0 1366 Lactococcus raffinolactis 308 0 1 species Lactococcus piscium 554 1364 1301 17448 Streptococcus genus 184 43 1 0 1 species 0 1304 Streptococcus salivarius 768 1 species 0 1811193 Streptococcus pantholopis 272 0 species 1 699 Streptococcus gallolyticus 315405 species 1 0 28037 594 Streptococcus mitis 1888195 Streptococcus himalayensis 193 1 species 0 species 1 0 1305 196 Streptococcus sanguinis Streptococcus pneumoniae 630 1313 0 1 species species 1 0 1814128 242 Streptococcus halotolerans 1308 Streptococcus thermophilus 525 1 species 0 1 species 0 59310 Streptococcus macedonicus 310 1 species 0 1302 Streptococcus gordonii 687 0 1 species Streptococcus pluranimalium 255 82348 Streptococcus infantarius 431 102684 0 1 species 0 1 species Streptococcus lutetiensis 271 150055 1349 420 Streptococcus uberis species 1 0 0 species 1 313 Streptococcus pasteurianus 197614 0 1 species Streptococcus mutans 614 1309 257758 Streptococcus pseudopneumoniae 200 1 species 0 0 1 species Streptococcus agalactiae 892 1311 species 1 0 1346 310 Streptococcus iniae 1509 671232 0 species group 3 676 Streptococcus anginosus 1328 0 species 1 277 Streptococcus constellatus 76860 0 species 1 1338 556 Streptococcus intermedius species 1 0 1 species 0 1335 Streptococcus equinus 224 species 1 0 1318 279 Streptococcus parasanguinis 0 1 species Streptococcus suis 1090 1307 species 1 0 45634 201 Streptococcus cristatus 1 species 0 1303 Streptococcus oralis 559 0 1 species Streptococcus acidominimus 238 1326 no rank 7 0 2608887 1518 1839799 Streptococcus sp. FDAARGOS_192 233 1 species 0 1 species 0 1759399 Streptococcus sp. A12 174 0 1 species Streptococcus sp. 'group B' 427 1319 0 species 1 161 Streptococcus sp. NPS 308 1902136 0 1 species Streptococcus sp. oral taxon 431 209 712633 1156431 144 Streptococcus sp. I-G2 species 1 0 170 Streptococcus sp. I-P16 1156433 0 species 1 1314 900 Streptococcus pyogenes species 1 0 400065 254 Streptococcus merionis species 1 0 0 species 1 262 Streptococcus marmotae 1825069 Streptococcus parauberis 442 1348 0 1 species 119603 966 species group 2 0 0 species 1 354 Streptococcus dysgalactiae 1334 Streptococcus equi 612 1336 0 1 species 909932 6631 Negativicutes class 12 28 1 0 909929 Selenomonadales 4152 13 order 24 1 0 4 family 11 1 0 1843490 Sporomusaceae 1903 3 8 genus 0 1 365348 Pelosinus 1892 942 2629460 0 1 no rank Pelosinus sp. UFO1 942 484770 0 1 species 0 species 1 942 Pelosinus fermentans 365349 2225 Selenomonadaceae 1843491 1 0 family 11 8 158846 722 genus 1 0 158847 Megamonas hypermegale 722 1 species 0 970 1492 Selenomonas 33 genus 6 0 1 335 Selenomonas ruminantium 971 0 species 1 Selenomonas sputigena 345 69823 0 1 species 3 no rank 0 2637378 779 1 species 0 1884263 Selenomonas sp. oral taxon 920 192 species 1 0 712538 291 Selenomonas sp. oral taxon 478 0 species 1 296 Selenomonas sp. oral taxon 136 713030 0 1 5 3 order Acidaminococcales 494 1843488 0 1 4 family 4 491 Acidaminococcaceae 909930 904 487 Acidaminococcus 5 genus 3 0 1 species 1 0 905 286 Acidaminococcus fermentans species 1 0 187327 196 Acidaminococcus intestini 1843489 1973 Veillonellales order 7 9 1 0 31977 1966 Veillonellaceae 8 family 8 0 1 381 906 0 genus 1 0 1 species Megasphaera elsdenii 381 907 1 0 3 genus 10 Veillonella 885 29465 650 Veillonella parvula 29466 0 species 1 248315 Veillonella rodentium 225 1 species 0 2 2 genus 0 1 909928 Negativicoccus 259 Negativicoccus massiliensis 257 1702287 0 1 species 0 genus 1 433 39948 species 1 0 39950 433 Dialister pneumosintes 1676648 603 Limnochordia 4 class 5 0 1 Limnochordales 599 1676649 0 1 4 11 order 0 1 3 6 family Limnochordaceae 588 1676650 1 0 2 genus 18 Limnochorda 582 1676651 Limnochorda pilosa 564 1555112 0 1 species class 4 9 1 0 526524 1905 Erysipelotrichia 526525 1901 Erysipelotrichales 10 order 8 0 1 128827 1891 Erysipelotrichaceae 8 family 7 0 1 genus 1 0 1729679 176 Faecalibaculum rodentium 176 1702221 0 1 species 305 544447 0 no rank 1 species 1 0 1834207 305 Erysipelotrichaceae bacterium I46 0 1 3 11 genus Erysipelothrix 844 1647 Erysipelothrix larvae 435 1514105 0 1 species 1648 Erysipelothrix rhusiopathiae 398 1 species 0 191303 558 1 genus 0 2638206 558 no rank 1 0 558 Turicibacter sp. H121 1712675 0 species 1 84086 907 1 no rank 0 1 species 0 243899 endosymbiont 'TC1' of Trimyema compressum 907 215 188 class 0 1 186801 Clostridia 139820 0 1 12 12 order Halanaerobiales 5459 53433 1 0 6 family 3 Halanaerobiaceae 3619 972 2 genus 23 1 0 32636 Halothermothrix 616 1 species 0 31909 Halothermothrix orenii 593 3 17 genus 0 1 2330 Halanaerobium 3000 1 species 0 656519 Halanaerobium hydrogeniformans 1378 Halanaerobium praevalens 1605 2331 0 1 species 0 1 1 family 5 1828 Halobacteroidaceae 53434 2 genus 1 1 0 28186 Acetohalobium 677 676 Acetohalobium arabaticum 28187 0 species 1 1 0 genus 3 2 1150 Halobacteroides 42417 0 species 1 1147 Halobacteroides halobius 42422 order 320 157 1 0 186802 116656 Clostridiales 10510 Lachnospiraceae 186803 0 1 16 family 26 382 2719313 0 1 genus 208479 382 [Clostridium] bolteae species 1 0 4 12 genus 0 1 1506553 Lachnoclostridium 1469 2608895 387 1 no rank 0 387 Lachnoclostridium sp. YL32 1834196 0 species 1 0 species 1 253 Lachnoclostridium phocaeense 1871021 66219 Lachnoclostridium phytofermentans 817 1 species 0 1 genus 2 0 1 2039240 475 Anaerotignum species 1 0 28446 474 Anaerotignum propionicum 1 0 genus 4 2 1726 Cellulosilyticum 698776 29360 1722 Cellulosilyticum lentocellum species 1 0 2719231 434 1 genus 0 0 species 1 434 [Clostridium] saccharolyticum 84030 572511 826 Blautia 1 genus 3 0 1 0 no rank 1 353 2648079 Blautia sp. YL58 353 1796616 0 1 species 0 1 species Blautia hansenii 472 1322 518 1663717 0 1 genus 518 Herbinix luporum 1679721 0 species 1 186928 631 no rank 2 0 39491 [Eubacterium] rectale 356 1 species 0 1 species 0 712991 Lachnospiraceae bacterium oral taxon 500 275 550 Anaerostipes 207244 1 0 genus 1 2 549 Anaerostipes hadrus 649756 0 species 1 2569097 1052 genus 1 0 39488 1052 [Eubacterium] hallii species 1 0 0 1 genus 747 28050 747 [Eubacterium] eligens 39485 0 species 1 3 3 genus 0 1 830 Butyrivibrio 1362 1 species 0 185008 Butyrivibrio hungatei 634 Butyrivibrio proteoclasticus 725 43305 0 1 species 0 1 1 genus 2 322 Roseburia 841 321 Roseburia hominis 301301 0 species 1 0 1 40 85 family Clostridiaceae 76753 31979 3 genus 4 1 0 114627 Alkaliphilus 1672 208226 1067 Alkaliphilus metalliredigens species 1 0 461876 Alkaliphilus oremlandii 601 1 species 0 390805 843 1 genus 0 1 species 0 1424294 Geosporobacter ferrireducens 843 1 genus 0 1981033 Mordavella 1 1485 71377 Clostridium 346 genus 30 0 1 Clostridium sporogenes 1678 1509 0 1 species 1 species 0 36745 Clostridium saccharoperbutylacetonicum 3226 species 1 0 29341 1869 Clostridium argentinense species 1 0 1519 1168 Clostridium tyrobutyricum 1492 Clostridium butyricum 2826 1 species 0 169679 Clostridium saccharobutylicum 2944 1 species 0 0 1 species Clostridium carboxidivorans 2061 217159 1069 Clostridium aceticum 84022 0 species 1 0 species 1 1422 Clostridium autoethanogenum 84023 856 2614128 0 no rank 2 755731 Clostridium sp. BNL1100 672 1 species 0 1042156 184 Clostridium sp. SY8519 species 1 0 1493 Clostridium cellulovorans 1684 1 species 0 1538 1474 Clostridium ljungdahlii species 1 0 species 1 0 1497 1125 Clostridium formicaceticum 0 1 species Clostridium novyi 1321 1542 0 1 species Clostridium pasteurianum 3446 1501 1513 Clostridium tetani 1886 1 species 0 Clostridium taeniosporum 1921 394958 0 1 species species 1 0 46867 1580 Clostridium chauvoei 1548 Clostridium scatologenes 2123 1 species 0 1 species 0 1502 Clostridium perfringens 3560 3940 Clostridium beijerinckii 1520 0 species 1 species 1 0 1534 1975 Clostridium kluyveri 1491 Clostridium botulinum 16532 1 species 0 1397 Clostridium cochlearium 1494 0 species 1 0 1 species Clostridium baratii 2960 1561 0 1 species Clostridium bornimense 1878 1216932 species 1 0 238834 1617 Clostridium estertheticum 0 1 species Clostridium acetobutylicum 1493 1488 2775 Candidatus Arthromitus 49082 1 0 genus 32 4 0 3 no rank 2743 2638829 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 904 1 species 0 0 1 species Candidatus Arthromitus sp. SFB-mouse-NL 924 1508644 49118 915 Candidatus Arthromitus sp. SFB-mouse species 1 0 Syntrophomonadaceae 573 68298 0 1 5 9 family 1 0 2 genus 1 Syntrophothermus 199 129001 species 1 0 86170 198 Syntrophothermus lipocalidus 862 365 Syntrophomonas genus 4 2 1 0 Syntrophomonas wolfei 361 863 0 1 species 266 990719 0 2 family 990721 Christensenella 266 2 4 genus 0 1 1 species 0 1805714 Christensenella massiliensis 262 9 family 3 0 1 31984 399 Heliobacteriaceae Heliobacterium 390 2697 1 0 2 genus 7 species 1 0 35701 383 Heliobacterium modesticaldum 28 family 48 1 0 186807 Peptococcaceae 9017 523 Dehalobacterium 51514 0 1 1 genus 2 0 species 1 522 Dehalobacterium formicoaceticum 51515 Desulfitobacterium 1656 36853 1 0 5 genus 17 1 species 0 49338 Desulfitobacterium hafniense 485 1 species 0 142877 Desulfitobacterium metallireducens 381 36854 357 Desulfitobacterium dehalogenans species 1 0 Desulfitobacterium dichloroeliminans 416 233055 0 1 species 278993 403 genus 1 0 863643 403 Thermincola potens species 1 0 0 1 2 1 genus Syntrophobotulus 279 51196 0 species 1 278 Syntrophobotulus glycolicus 51197 0 1 12 genus 5 1760 Desulfotomaculum 1562 species 1 0 1565 359 Desulfotomaculum nigrificans 476 Desulfotomaculum ferrireducens 1833852 0 species 1 422 Desulfotomaculum ruminis 1564 0 species 1 0 species 1 491 Desulfotomaculum reducens 59610 715 2282740 0 1 genus 0 1 species Desulfotomaculum gibsoniae 715 102134 genus 10 4 1 0 79206 1927 Desulfosporosinus 687 Desulfosporosinus acidiphilus 885581 0 species 1 1563 Desulfosporosinus orientis 626 1 species 0 Desulfosporosinus meridiei 604 79209 0 1 species genus 3 2 1 0 471826 341 Candidatus Desulforudis 1 species 0 471827 Candidatus Desulforudis audaxviator 338 1 0 genus 16 4 884 Dehalobacter 56112 2635733 579 2 no rank 0 0 species 1 290 Dehalobacter sp. DCA 1147129 1 species 0 1131462 Dehalobacter sp. CF 289 0 1 species Dehalobacter restrictus 289 55583 0 1 genus 481 2282742 58138 481 Desulfotomaculum acetoxidans species 1 0 186804 Peptostreptococcaceae 7771 9 17 family 0 1 541 1411023 0 1 no rank 0 species 1 541 Peptostreptococcaceae bacterium oral taxon 929 2081703 186831 1109 1 genus 0 0 species 1 1109 Acetoanaerobium sticklandii 1511 1 genus 0 44259 414 1 species 0 143361 Filifactor alocis 414 genus 4 2 1 0 1870884 3606 Clostridioides 1496 Clostridioides difficile 3602 1 species 0 genus 1 0 1481960 315 1731 Peptoclostridium acidaminophilum 315 1 species 0 1 0 genus 1 2 1769 Paeniclostridium 1849828 1505 1768 Paeniclostridium sordellii species 1 0 0 9 no rank 1847 538999 543314 608 family 3 0 0 species 1 272 [Eubacterium] sulci 143393 86331 336 Mogibacterium 2 genus 2 0 1 114527 334 Mogibacterium diversum species 1 0 2 genus 2 1 0 1392389 Intestinimonas 371 Intestinimonas butyriciproducens 369 1297617 0 1 species 539000 Clostridiales Family XVII. Incertae Sedis 516 3 10 family 0 1 73918 Thermaerobacter 506 2 11 genus 0 1 73919 495 Thermaerobacter marianensis species 1 0 2717089 352 1 genus 0 1 species 0 2086584 Mordavella sp. Marseille-P3756 352 2144 Ruminococcaceae 541000 1 0 family 27 11 2305133 162 1 no rank 0 1 species 0 1572656 Ruminococcaceae bacterium CPB6 162 0 1 7 genus 2 435 Flavonifractor 946234 Flavonifractor plautii 428 292800 0 1 species genus 1 0 253238 303 303 Ethanoligenens harbinense 253239 0 species 1 211 552397 0 1 no rank 1 species 0 29343 [Clostridium] cellulosi 211 genus 2 0 1263 617 Ruminococcus albus 314 1264 0 1 species 0 species 1 303 Ruminococcus bicirculans 1160721 0 genus 1 1 Herbivorax 1890281 0 1 5 genus 2 388 Faecalibacterium 216851 853 383 Faecalibacterium prausnitzii species 1 0 0 1 3 family 3 593 Symbiobacteriaceae 543349 2733 Symbiobacterium 590 2 6 genus 0 1 2734 Symbiobacterium thermophilum 584 1 species 0 0 family 12 4506 2304686 320 2304691 0 genus 1 0 1 species [Clostridium] stercorarium 320 1510 2 1 genus 0 1 1637257 Mageeibacillus 226 species 1 0 884684 225 Mageeibacillus indolicus 488 2304693 0 1 genus 84032 [Clostridium] thermosuccinogenes 488 1 species 0 2304692 2125 genus 3 0 species 1 0 1515 500 Ruminiclostridium thermocellum [Clostridium] clariflavum 824 288965 0 1 species 1 species 0 1677857 Herbivorax saccincola 801 genus 16 2 1 0 1508657 605 Ruminiclostridium 1 species 0 1521 [Clostridium] cellulolyticum 589 236752 Fastidiosipila 531 2 genus 2 1 0 236753 Fastidiosipila sanguinis 529 1 species 0 2305130 211 no rank 1 0 1834198 211 Ruminiclostridium sp. KB18 species 1 0 1 0 3 family 1 Oscillospiraceae 306 216572 459786 Oscillibacter 305 2 genus 4 1 0 1 species 0 351091 Oscillibacter valericigenes 301 family 9 5 1 0 186806 1651 Eubacteriaceae 0 1 2 8 genus Eubacterium 1010 1730 1002 Eubacterium limosum 1736 0 species 1 Acetobacterium 632 33951 0 1 2 1 genus 631 Acetobacterium woodii 33952 0 species 1 485256 Natranaerobiales 707 4 9 order 0 1 Natranaerobiaceae 698 485255 1 0 3 family 5 375928 Natranaerobius 693 2 5 genus 0 1 688 Natranaerobius thermophilus 375929 0 species 1 2770089 732 order 3 0 2770092 448 1 family 0 1 genus 0 499228 448 499229 Tepidanaerobacter acetatoxydans 448 1 species 0 0 2 family 284 2770093 284 Thermosediminibacter 291988 0 1 1 genus 2 1 species 0 291990 Thermosediminibacter oceani 283 1 0 38 order 38 Thermoanaerobacterales 16078 68295 0 1 3 1 family Thermoanaerobacterales Family IV. Incertae Sedis 290 543372 252965 Mahella 289 2 3 genus 0 1 Mahella australiensis 286 252966 0 1 species 186814 7679 Thermoanaerobacteraceae 20 family 18 0 1 4 no rank 0 42857 615 1 genus 2 0 1 42837 247 Ammonifex 42838 246 Ammonifex degensii species 1 0 44260 368 Moorella genus 1 2 1 0 Moorella thermoacetica 367 1525 0 1 species 1 genus 0 249529 579 species 1 0 911092 579 Caldanaerobacter subterraneus 268 Thermacetogenium 140458 0 1 1 genus 2 1 species 0 85874 Thermacetogenium phaeum 267 1 genus 0 129957 402 Carboxydothermus hydrogenoformans 402 129958 0 1 species 1 0 genus 253 9 5795 Thermoanaerobacter 1754 496866 Thermoanaerobacter pseudethanolicus 659 1 species 0 659 Thermoanaerobacter brockii 29323 0 species 1 species 1 0 46354 741 Thermoanaerobacter wiegelii 2325 673 Thermoanaerobacter kivui species 1 0 108150 699 Thermoanaerobacter italicus species 1 0 583357 Thermoanaerobacter mathranii 682 1 species 0 1429 2636821 0 2 no rank Thermoanaerobacter sp. X513 722 573062 0 1 species species 1 0 399726 707 Thermoanaerobacter sp. X514 0 1 3 2 family Thermodesulfobiaceae 916 227387 2 1 genus 0 1 227388 Thermodesulfobium 914 0 species 1 913 Thermodesulfobium narugense 184064 Thermoanaerobacterales Family III. Incertae Sedis 7155 543371 0 1 13 8 family Caldicellulosiruptor 5224 44000 1 0 9 genus 73 Caldicellulosiruptor saccharolyticus 742 44001 0 1 species Caldicellulosiruptor kronotskyensis 736 413889 0 1 species 52766 Caldicellulosiruptor lactoaceticus 562 1 species 0 1 species 0 717609 Caldicellulosiruptor obsidiansis 653 413888 610 Caldicellulosiruptor hydrothermalis species 1 0 0 1 species Caldicellulosiruptor owensensis 629 55205 52765 Caldicellulosiruptor kristjanssonii 575 1 species 0 31899 Caldicellulosiruptor bescii 644 1 species 0 1923 Thermoanaerobacterium 28895 1 0 genus 8 3 0 1 species Thermoanaerobacterium xylanolyticum 691 29329 1517 Thermoanaerobacterium thermosaccharolyticum 1224 1 species 0 5337 Tissierellia 1737404 1 0 class 16 18 15 order 29 1 0 1737405 Tissierellales 4826 Gottschalkiaceae 1278 2042895 0 1 3 3 family 6 genus 2 0 1 1505664 1275 Gottschalkia 1556 Gottschalkia acidurici 1269 1 species 0 11 family 19 1 0 1570339 Peptoniphilaceae 3519 255 1161127 0 genus 1 255 Murdochiella vaginalis 1852373 0 species 1 3 genus 7 1 0 165779 Anaerococcus 1019 33034 513 Anaerococcus prevotii species 1 0 1870984 499 Anaerococcus mediterraneensis species 1 0 1 0 genus 2 2 467 Peptoniphilus 162289 no rank 1 0 2637196 465 0 1 species Peptoniphilus sp. ING2-D1G 465 1912856 1 genus 2 0 1 150022 744 Finegoldia Finegoldia magna 743 1260 0 1 species Parvimonas 1015 543311 1 0 2 genus 1 0 1 species Parvimonas micra 1014 33033 1737407 495 2 no rank 0 1582879 Ezakiella 495 2 2 genus 0 1 species 1 0 1852374 493 Ezakiella massiliensis 6788927 1798711 0 159 clade phylum 22 159 1 0 1117 6788927 Cyanobacteria 0 1 1 order 4 1350 Chroococcidiopsidales 1890505 1349 Chroococcidiopsidaceae 1890528 1 0 family 20 3 0 1 8 genus 2 1329 Chroococcidiopsis 54298 54299 1321 Chroococcidiopsis thermalis species 1 0 58 212 order 0 1 1890424 Synechococcales 6719772 family 4 3 1 0 1890436 1248 Pseudanabaenaceae 1244 Pseudanabaena 1152 0 1 10 genus 2 1234 2593292 0 no rank 1 82654 Pseudanabaena sp. PCC 7367 1234 1 species 0 0 2 family 733 2303730 2 5 genus 0 1 170610 Halomicronema 733 Halomicronema hongdechloris 728 1209493 0 1 species 5 family 19 1 0 1213 Prochloraceae 6561707 1218 Prochlorococcus 6561688 4 172 genus 0 1 1219 5056966 Prochlorococcus marinus species 1 0 no rank 2 0 2627481 1504550 1501268 1496457 Prochlorococcus sp. MIT 0604 species 1 0 1501269 8093 Prochlorococcus sp. MIT 0801 species 1 0 Merismopediaceae 1546 1890428 1 0 5 family 6 genus 27 4 1 0 1142 1540 Synechocystis no rank 3 0 2640012 1513 0 species 1 427 Synechocystis sp. IPPAS B-1465 2116702 1148 427 Synechocystis sp. PCC 6803 species 1 0 1 species 0 1147 Synechocystis sp. PCC 6714 659 3 1 family 0 1 1890429 Acaryochloridaceae 1019 0 1 2 7 genus Acaryochloris 1018 155977 1 species 0 155978 Acaryochloris marina 1011 1890438 Leptolyngbyaceae 2544 6 17 family 0 1 5 26 genus 0 1 47251 Leptolyngbya 2527 2650499 1921 3 no rank 0 0 species 1 838 Leptolyngbya sp. PCC 7376 111781 1080068 Leptolyngbya sp. O-77 606 1 species 0 0 species 1 477 Leptolyngbya sp. NIES-3755 1752064 0 1 species Leptolyngbya boryana 580 1184 1 0 family 54 33 150763 Synechococcaceae 1890426 146661 Synechococcus 1129 0 1 821 genus 26 23 no rank 0 2626047 145267 110662 Synechococcus sp. CC9605 45134 1 species 0 1 species 0 84588 Synechococcus sp. WH 8102 4775 1 species 0 166314 Synechococcus sp. WH 8109 58919 0 1 species Synechococcus sp. SynAce01 963 1916956 1350461 398 Synechococcus sp. UTEX 2973 species 1 0 Synechococcus sp. RCC307 1229 316278 0 1 species 0 1 species Synechococcus sp. CC9902 898 316279 1 species 0 585425 Synechococcus sp. KORDI-52 15834 0 species 1 787 Synechococcus sp. CC9311 64471 0 species 1 337 Synechococcus sp. JA-3-3Ab 321327 32049 Synechococcus sp. PCC 7002 290 1 species 0 0 1 species Synechococcus sp. PCC 7117 316 195498 species 1 0 374981 331 Synechococcus sp. PCC 7003 195248 Synechococcus sp. PCC 8807 294 1 species 0 species 1 0 374982 331 Synechococcus sp. PCC 73109 1 species 0 1173263 Synechococcus sp. PCC 7502 826 195253 376 Synechococcus sp. PCC 6312 species 1 0 0 1 species Synechococcus sp. WH 8103 4678 29410 1280380 3159 Synechococcus sp. KORDI-100 species 1 0 species 1 0 321332 364 Synechococcus sp. JA-2-3B'a(2-13) species 1 0 585423 3209 Synechococcus sp. KORDI-49 1 species 0 32051 Synechococcus sp. WH 7803 1500 0 1 species Synechococcus sp. NIES-970 319 1827144 0 species 1 335 Synechococcus elongatus 32046 0 1 species Synechococcus lividus 238 33070 Cyanobium 2988 167375 0 1 3 61 genus 1555 Cyanobium gracile 59930 0 species 1 0 1 no rank 1372 2627006 1 species 0 1851505 Cyanobium sp. NIES-981 1372 2 4 genus 0 1 13034 Dactylococcopsis 761 757 Dactylococcopsis salina 292566 0 species 1 299 146785 0 1 genus 146786 Thermosynechococcus elongatus 299 1 species 0 1 no rank 0 1983111 753 0 species 1 753 cyanobacterium endosymbiont of Epithemia turgida 718217 0 47 subclass 29000 1301283 1 0 order 50 26 19367 Chroococcales 1118 0 1 10 10 family Aphanothecaceae 7143 1890450 0 1 2 1 genus Candidatus Atelocyanobacterium 1290 1453359 species 1 0 713887 1289 Candidatus Atelocyanobacterium thalassa 0 genus 2 2694 28070 1 species 0 2546359 1256 497965 1256 Cyanothece sp. PCC 7822 strain 1 0 1438 2546356 0 1 species 65393 1438 Cyanothece sp. PCC 7424 strain 1 0 no rank 2 0 92682 668 2 3 genus 0 1 76023 Halothece 668 2632878 665 1 no rank 0 Halothece sp. PCC 7418 665 65093 0 1 species genus 2 0 2546365 1421 0 species 2 1421 2546366 0 1 strain Cyanothece sp. PCC 8802 719 395962 0 strain 1 702 Cyanothece sp. PCC 8801 41431 263510 1060 genus 1 0 1060 2546360 0 1 species 0 strain 1 1060 Cyanothece sp. ATCC 51142 43989 1890452 1527 Cyanobacteriaceae family 7 3 1 0 102234 1520 Cyanobacterium genus 2 2 1 0 0 1 species Cyanobacterium aponinum 1518 379064 3174 Microcystaceae 1890449 0 1 20 family 4 0 1 19 genus 3 3154 Microcystis 1125 0 no rank 1 856 2643300 1 species 0 1967666 Microcystis sp. MC19 856 1126 2279 Microcystis aeruginosa species 1 0 Chroococcaceae 7473 1890464 0 1 8 51 family 268175 Chondrocystis 3055 2 4 genus 0 1 3051 2648896 0 no rank 1 species 1 0 2005460 3051 Chondrocystis sp. NIES-4102 102231 915 Gloeocapsa genus 6 2 1 0 0 1 no rank 909 2623012 species 1 0 1173026 909 Gloeocapsa sp. PCC 7428 genus 11 3 1 0 669357 3452 Geminocystis 0 no rank 2 3441 2625037 0 1 species Geminocystis sp. NIES-3709 1682 1617448 Geminocystis sp. NIES-3708 1759 1615909 0 1 species 9633 Oscillatoriales 1150 0 1 56 order 21 0 1 22 family 3 498 Coleofasciculaceae 1892251 0 1 9 genus 2 476 Geitlerinema 63132 0 1 no rank 467 2648775 0 species 1 467 Geitlerinema sp. PCC 7407 1173025 1892252 3574 Microcoleaceae family 15 5 1 0 1 0 2 genus 4 Trichodesmium 2926 1205 1206 Trichodesmium erythraeum 2922 1 species 0 2 genus 5 1 0 44471 Microcoleus 633 628 2642155 0 no rank 1 Microcoleus sp. PCC 7113 628 1173027 0 1 species 1 0 family 4 3 1095 Gomontiellaceae 1892255 3 genus 2 0 1 241421 1091 Crinalium Crinalium epipsammum 1088 241425 0 1 species 3892 Oscillatoriaceae 1892254 0 1 33 family 6 genus 7 2 1 0 1155738 1688 Moorea 1155739 Moorea producens 1681 1 species 0 3 genus 11 1 0 1158 Oscillatoria 2171 118323 Oscillatoria acuminata 1040 1 species 0 0 species 1 1120 Oscillatoria nigro-viridis 482564 0 1 33 family 3 518 Cyanothecaceae 1892249 43988 Cyanothece 485 2 41 genus 0 1 1 no rank 0 2649277 444 Cyanothece sp. PCC 7425 444 395961 0 1 species 307596 1252 Gloeobacteria 7 class 6 0 1 307595 1245 Gloeobacterales 16 order 5 0 1 4 family 14 1 0 1890422 Gloeobacteraceae 1229 33071 1215 Gloeobacter 3 genus 3 0 1 1416614 615 Gloeobacter kilaueensis species 1 0 species 1 0 33072 597 Gloeobacter violaceus 0 1 34 105 order Nostocales 31983 1161 1892263 2432 Hapalosiphonaceae family 3 3 1 0 1190 Fischerella 2429 2 5 genus 0 1 2424 494603 0 no rank 1 1 species 0 1752063 Fischerella sp. NIES-3754 2424 0 no rank 1 987 1219117 1 species 0 1940762 Nostocales cyanobacterium HT-58-2 987 9683 2661849 0 8 family 1186 9683 Calothrix genus 59 8 1 0 no rank 6 0 2619626 8469 99598 Calothrix sp. PCC 7507 1037 1 species 0 2005469 1811 Calothrix sp. NIES-4071 species 1 0 species 1 0 2005461 1484 Calothrix sp. NIES-4101 1386 Calothrix sp. NIES-2098 1954171 0 species 1 species 1 0 2005462 1819 Calothrix sp. NIES-3974 932 Calothrix sp. 336/3 1337936 0 species 1 1 species 0 32054 Calothrix parietina 1155 1185 Rivulariaceae 2436 3 family 34 1 0 2 7 genus 0 1 373984 Rivularia 2402 2395 2676603 0 no rank 1 Rivularia sp. PCC 7116 2395 373994 0 1 species 0 1 50 family 18 16340 Nostocaceae 1162 2030 Trichormus 264688 0 1 2 genus 3 0 species 1 1015 Trichormus azollae 1164 264691 1013 Trichormus variabilis species 1 0 Nostoc 10577 1177 0 1 10 75 genus 0 species 1 1084 Nostoc punctiforme 272131 species 1 0 1306274 1569 Nostoc flagelliforme 7849 2593658 0 no rank 7 species 1 0 103690 986 Nostoc sp. PCC 7120 1869241 Nostoc sp. CENA543 1091 1 species 0 species 1 0 28072 1288 Nostoc sp. PCC 7524 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 927 1 species 0 species 1 0 317936 1249 Nostoc sp. PCC 7107 0 species 1 1222 Nostoc sp. NIES-3756 1751286 species 1 0 1261031 1086 Nostoc sp. 'Peltigera membranacea cyanobiont N6' Anabaena 3683 1163 1 0 4 genus 26 Anabaena cylindrica 1313 1165 0 1 species 2344 2619674 0 no rank 2 0 1 species Anabaena sp. 90 1146 46234 1198 Anabaena sp. WA102 1647413 0 species 1 13 order 8 0 1 52604 4795 Pleurocapsales 4048 Dermocarpellaceae 1890498 0 1 24 family 4 Stanieria 4024 102115 0 1 3 17 genus 0 species 1 1806 Stanieria cyanosphaera 102116 2201 2642663 0 no rank 1 1 species 0 1807358 Stanieria sp. NIES-3757 2201 1890500 Hyellaceae 734 3 family 16 1 0 2 2 genus 0 1 44474 Pleurocapsa 718 716 Pleurocapsa minor 54308 0 species 1 0 5 phylum 612 67819 Fimbriimonadia 612 1663419 1 0 5 class 8 Fimbriimonadales 604 1663425 0 1 4 4 order 0 1 3 family 3 600 Fimbriimonadaceae 1663426 1 0 genus 5 2 597 Fimbriimonas 1005038 1 species 0 1005039 Fimbriimonas ginsengisoli 592 2 no rank 0 1859062 302 Thermobaculum 302 262406 1 0 2 genus 1 301 Thermobaculum terrenum 166501 0 species 1 7268 200783 0 29 phylum 0 1 24 class 29 7268 Aquificae 187857 1138 Desulfurobacteriales 1485951 0 1 6 order 6 5 family 14 1 0 558314 Desulfurobacteriaceae 1132 Desulfurobacterium 956 64159 1 0 2 genus 6 species 1 0 64160 950 Desulfurobacterium thermolithotrophum 171868 Thermovibrio 162 2 3 genus 0 1 species 1 0 228745 159 Thermovibrio ammonificans Aquificales 6106 32069 1 0 22 order 18 339 90150 0 no rank 2 2 1 genus 0 1 412592 Thermosulfidibacter 339 412593 Thermosulfidibacter takaii 338 1 species 0 6 family 5 1 0 224027 Hydrogenothermaceae 2634 182899 Persephonella 639 2 1 genus 0 1 0 1 species Persephonella marina 638 309805 212790 Sulfurihydrogenibium 1990 3 15 genus 0 1 1 no rank 0 2619248 1068 436114 1068 Sulfurihydrogenibium sp. YO3AOP1 species 1 0 Sulfurihydrogenibium azorense 907 309806 0 1 species 13 family 11 1 0 64898 Aquificaceae 3115 2404 Hydrogenobaculum 168657 0 1 87 genus 6 no rank 5 0 2622382 2317 459 Hydrogenobaculum sp. HO 547144 0 species 1 species 1 0 547143 459 Hydrogenobaculum sp. 3684 0 1 species Hydrogenobaculum sp. SHO 459 547145 380749 481 Hydrogenobaculum sp. Y04AAS1 species 1 0 Hydrogenobaculum sp. SN 459 547146 0 1 species 1 0 2 genus 2 Hydrogenobacter 212 939 Hydrogenobacter thermophilus 210 940 0 1 species 294 Thermocrinis 75905 0 1 3 genus 3 1 species 0 75906 Thermocrinis ruber 156 1 species 0 136094 Thermocrinis albus 135 0 genus 1 194 2713 0 1 species Aquifex aeolicus 194 63363 1276 508458 0 phylum 11 0 1 11 7 class Synergistia 1276 649775 Synergistales 1269 649776 1 0 10 order 10 0 1 14 family 9 1259 Synergistaceae 649777 2 2 genus 0 1 81461 Thermanaerovibrio 175 173 Thermanaerovibrio acidaminovorans 81462 0 species 1 81466 279 Aminobacterium genus 3 2 1 0 species 1 0 81468 276 Aminobacterium colombiense Acetomicrobium 220 49894 1 0 2 genus 1 97477 219 Acetomicrobium mobile species 1 0 372 508459 0 1 genus 1197717 372 Cloacibacillus porcorum species 1 0 1 genus 0 336260 199 336261 Thermovirga lienii 199 1 species 0 68297 1563 phylum 6 0 1563 Dictyoglomia 203486 0 1 3 class 6 5 order 2 1 0 203487 Dictyoglomales 1560 203488 Dictyoglomaceae 1558 4 family 2 1 0 1556 Dictyoglomus 13 0 1 7 genus 3 14 745 Dictyoglomus thermophilum species 1 0 Dictyoglomus turgidum 804 513050 0 1 species Elusimicrobia 1626 74152 0 1 10 4 phylum 0 no rank 1 416 99260 uncultured Termite group 1 bacterium 416 167965 0 1 species 447830 880 Endomicrobia 1 class 5 0 1 1 order 4 0 1 1783344 879 Endomicrobiales 1783343 878 family 3 0 1 0 3 genus 2 Endomicrobium 878 1408194 389 Candidatus Endomicrobium trichonymphae 1408204 0 species 1 0 1 species Endomicrobium proavitum 487 1408281 class 2 3 1 0 641853 326 Elusimicrobia 641854 Elusimicrobiales 324 2 order 4 1 0 0 family 1 320 641876 423604 320 genus 1 0 1 species 0 423605 Elusimicrobium minutum 320 0 14 phylum 4332 40117 4332 Nitrospira 203693 0 1 27 class 14 189778 Nitrospirales 4305 13 order 37 1 0 12 family 23 1 0 189779 Nitrospiraceae 4268 1234 Nitrospira 2002 5 genus 23 1 0 0 1 species Candidatus Nitrospira inopinata 470 1715989 330214 Nitrospira defluvii 439 1 species 0 42253 629 Nitrospira moscoviensis species 1 0 0 1 species Nitrospira japonica 441 1325564 Thermodesulfovibrio 1373 28261 0 1 2 6 genus Thermodesulfovibrio yellowstonii 1367 28262 0 1 species 1 0 4 genus 8 Leptospirillum 870 179 261386 317 1 species group 0 317 Leptospirillum ferriphilum 178606 0 species 1 261385 264 1 species group 0 Leptospirillum sp. Group II 'CF-1' 264 1660083 0 1 species 0 species group 1 281 655606 0 1 species Leptospirillum ferrooxidans 281 180 396 phylum 2067 0 1 1224 1617433 Proteobacteria 1553900 Oligoflexia 4432 12 7 class 0 1 2024979 Bacteriovoracales 2231 6 7 order 0 1 1652132 1512 family 2 0 Halobacteriovorax 1512 1652133 1 0 2 genus 4 1508 Halobacteriovorax marinus 97084 0 species 1 Bacteriovoracaceae 712 263369 0 1 3 3 family 1 0 genus 1 2 709 Bacteriovorax 146784 0 1 species Bacteriovorax stolpii 708 960 18 order 5 0 1 213481 2194 Bdellovibrionales 213483 2176 Bdellovibrionaceae 5 family 4 0 1 958 Bdellovibrio 2171 3 15 genus 0 1 1570 Bdellovibrio bacteriovorus 959 0 species 1 1 species 0 453816 Bdellovibrio exovorus 586 class 673 574 1 0 28211 582395 Alphaproteobacteria order 291 67 1 0 204441 45913 Rhodospirillales 35 178 family 0 1 433 Acetobacteraceae 15808 genus 5 2 1 0 320496 443 Neoasaia 1 species 0 320497 Neoasaia chiangmaiensis 438 Parasaccharibacter 338 1602345 1 0 2 genus 3 1510841 335 Parasaccharibacter apium species 1 0 2369 Komagataeibacter 1434011 1 0 genus 57 5 0 species 1 477 Komagataeibacter medellinensis 1177712 1 species 0 265960 Komagataeibacter nataicola 590 1 species 0 28448 Komagataeibacter xylinus 843 33995 402 Komagataeibacter europaeus species 1 0 1 0 genus 74 3 2126 Acidiphilium 522 0 species 1 1024 Acidiphilium multivorum 62140 0 species 1 1028 Acidiphilium cryptum 524 8 genus 56 1 0 434 Acetobacter 4195 1635 Acetobacter pasteurianus 438 0 species 1 0 1 species Acetobacter tropicalis 531 104102 subgenus 1 0 151157 437 435 437 Acetobacter aceti species 1 0 Acetobacter oryzifermentans 377 1633874 0 1 species 65959 Acetobacter pomorum 346 1 species 0 1 species 0 446692 Acetobacter senegalensis 423 species 1 0 1076596 390 Acetobacter persici Asaia 395 91914 0 1 2 3 genus 91915 Asaia bogorensis 392 1 species 0 Granulibacter 989 364409 1 0 2 genus 8 species 1 0 364410 981 Granulibacter bethesdensis 0 1 26 genus 3 1189 Gluconobacter 441 Gluconobacter albidus 390 318683 0 1 species 442 Gluconobacter oxydans 773 1 species 0 Gluconacetobacter 786 89583 0 1 2 12 genus 33996 Gluconacetobacter diazotrophicus 774 1 species 0 Roseomonas 2291 125216 0 1 3 58 genus 257708 1091 Roseomonas gilardii species 1 0 1 no rank 0 2617492 1142 1142 Roseomonas sp. FDAARGOS_362 2018065 0 species 1 2 genus 2 1 0 153497 Kozakia 509 species 1 0 153496 507 Kozakia baliensis 41295 29814 Rhodospirillaceae family 430 31 1 0 0 1 12 genus 2 858 Pararhodospirillum 1612157 0 1 species Pararhodospirillum photometricum 846 1084 1 0 3 genus 35 Thalassospira 2354 168934 2048283 1129 Thalassospira sp. CSC3H3 species 1 0 220697 Thalassospira xiamenensis 1190 1 species 0 3 genus 31 1 0 1081 Rhodospirillum 2534 1381 Rhodospirillum centenum 34018 0 species 1 1122 Rhodospirillum rubrum 1085 0 species 1 2 genus 12 1 0 1263978 Candidatus Endolissoclinum 2509 species 1 0 1263979 2497 Candidatus Endolissoclinum faulkneri 5 genus 178 1 0 191 Azospirillum 8971 192 Azospirillum brasilense 2973 1 species 0 3077 Azospirillum lipoferum 193 0 species 1 0 species 1 1790 Azospirillum thiophilum 528244 1226968 Azospirillum humicireducens 953 1 species 0 2 17 genus 0 1 1543705 Nitrospirillum 1586 Nitrospirillum amazonense 1569 28077 0 1 species 2 11 genus 0 1 1543704 Niveispirillum 973 0 1 species Niveispirillum cyanobacteriorum 962 1612173 5 173 genus 0 1 13134 Magnetospirillum 6265 2931 2617991 0 2 no rank 0 1 species Magnetospirillum sp. XM-1 1395 1663591 species 1 0 1639348 1536 Magnetospirillum sp. ME-1 species 1 0 55518 1769 Magnetospirillum gryphiswaldense 84159 1392 Magnetospirillum magneticum species 1 0 1804663 487 Haematospirillum 12 genus 2 0 1 475 Haematospirillum jordaniae 1549855 0 species 1 1126 Magnetospira 1182780 1 0 genus 13 2 no rank 1 0 2685734 1113 species 1 0 1288970 1113 Magnetospira sp. QH-2 171436 1721 Tistrella genus 20 2 1 0 species 1 0 171437 1701 Tistrella mobilis 9 order 22 1 0 54526 Pelagibacterales 185956 Pelagibacteraceae 174430 1655514 0 1 6 77 family 3 37 genus 0 1 198251 Candidatus Pelagibacter 72846 no rank 1 0 2647897 10457 0 species 1 10457 Candidatus Pelagibacter sp. IMCC9063 1002672 1 species 0 198252 Candidatus Pelagibacter ubique 62352 1655516 101507 2 no rank 0 859653 82499 alpha proteobacterium HIMB5 species 1 0 744985 alpha proteobacterium HIMB59 19008 1 species 0 11504 Candidatus Fonsibacter 2045213 0 1 28 genus 2 Candidatus Fonsibacter ubiquis 11476 1925548 0 1 species 0 1 82 267 order Sphingomonadales 51651 204457 41297 40578 Sphingomonadaceae family 522 59 1 0 1 0 2 genus 8 Zymomonas 1202 541 1194 Zymomonas mobilis 542 0 species 1 1 0 genus 37 3 1498 Sphingorhabdus 1434046 no rank 2 0 2614947 1461 1806885 Sphingorhabdus sp. M41 703 1 species 0 2077182 Sphingorhabdus sp. YGSMI21 758 1 species 0 639 2709685 0 genus 1 Sphingorhabdus flavimaris 639 266812 0 1 species Rhizorhabdus 1006 1649486 0 1 2 10 genus 0 species 1 996 Rhizorhabdus dicambivorans 1850238 7805 Sphingopyxis 165697 1 0 genus 224 10 33052 Sphingopyxis terrae 688 1 species 0 species 1 0 1515612 701 Sphingopyxis fribergensis species 1 0 117207 696 Sphingopyxis alaskensis 1 species 0 33050 Sphingopyxis macrogoltabida 1491 species 1 0 267128 858 Sphingopyxis granuli 0 no rank 4 3147 2614943 1913578 Sphingopyxis sp. LPB0140 853 1 species 0 Sphingopyxis sp. 113P3 605 292913 0 1 species 1 species 0 1357916 Sphingopyxis sp. QXT-31 852 1866325 837 Sphingopyxis sp. MG species 1 0 2 genus 11 1 0 150203 Blastomonas 811 800 2626550 0 no rank 1 0 species 1 800 Blastomonas sp. RAC04 1842535 0 1 15 328 genus Sphingomonas 13405 13687 0 species 1 852 Sphingomonas melonis 152682 1 species 0 397260 Sphingomonas sanxanigenens 1115 0 no rank 6 5255 196159 745310 Sphingomonas sp. MM-1 843 1 species 0 species 1 0 1030157 651 Sphingomonas sp. KC8 727 Sphingomonas sp. Cra20 1327635 0 species 1 0 1 species Sphingomonas sp. LM7 684 1938607 species 1 0 1390395 1622 Sphingomonas sp. LK11 Sphingomonas sp. NIC1 728 1961362 0 1 species 0 species 1 763 Sphingomonas panacis 1560345 1 species 0 1609977 Sphingomonas hengshuiensis 804 1549858 Sphingomonas taxi 806 1 species 0 93064 Sphingomonas koreensis 780 1 species 0 1345 species 2 0 1 160791 2702 Sphingomonas wittichii Sphingomonas sp. DC-6 1357 1283312 0 1 strain 0 1 genus 687 2685927 1921510 687 Sphingomonas sp. JJ-A5 species 1 0 72173 Citromicrobium 689 2 genus 14 1 0 2630544 675 1 no rank 0 0 species 1 675 Citromicrobium sp. JL477 1634516 165696 3333 Novosphingobium genus 98 5 1 0 1 species 0 205844 Novosphingobium pentaromativorans 764 species 1 0 48935 633 Novosphingobium aromaticivorans 158500 1041 Novosphingobium resinovorum species 1 0 1 no rank 0 2644732 797 702113 797 Novosphingobium sp. PP1Y species 1 0 15 genus 290 1 0 165695 Sphingobium 8981 46429 645 Sphingobium chlorophenolicum species 1 0 1332080 Sphingobium baderi 561 1 species 0 no rank 6 0 2611147 3780 774 Sphingobium sp. YBL2 484429 0 species 1 1315974 671 Sphingobium sp. TKS species 1 0 0 species 1 552 Sphingobium sp. MI1205 407020 1843368 609 Sphingobium sp. RAC03 species 1 0 467 Sphingobium sp. EP60837 1855519 0 species 1 Sphingobium sp. SYK-6 707 627192 0 1 species Sphingobium hydrophobicum 519 1673076 0 1 species species 1 0 76947 523 Sphingobium herbicidovorans 0 species 1 634 Sphingobium cloacae 120107 544 Sphingobium japonicum 332056 0 species 1 Sphingobium yanoikuyae 890 13690 0 1 species species 1 0 332055 595 Sphingobium indicum 1 0 family 172 22 10806 Erythrobacteraceae 335929 genus 2 0 2800681 1379 0 1 species Erythrobacter atlanticus 662 1648404 Erythrobacter gangjinensis 717 502682 0 1 species 637 2800682 0 genus 1 species 1 0 645517 637 Altererythrobacter namhicola 0 2 genus 1019 2800686 497 Altererythrobacter mangrovi 1982042 0 species 1 692370 522 Altererythrobacter dongtanensis species 1 0 2 genus 0 1855416 1011 0 species 1 545 Erythrobacter flavus 192812 Erythrobacter seohaensis 466 266951 0 1 species 0 genus 1 466 2800685 1 species 0 543877 Altererythrobacter marensis 466 0 1 136 genus 4 1574 Altererythrobacter 361177 0 species 1 544 Altererythrobacter atlanticus 1267766 1 species 0 476157 Altererythrobacter ishigakiensis 435 459 Altererythrobacter epoxidivorans 361183 0 species 1 0 6 no rank 3240 2800788 1041 Erythrobacter 1990 3 genus 129 1 0 1320 Erythrobacter litoralis 39960 0 species 1 Porphyrobacter neustonensis 541 1112 0 1 species 1111 1250 Porphyrobacter genus 69 3 1 0 1181 2683265 0 no rank 2 Porphyrobacter sp. LM 6 667 1896196 0 1 species species 1 0 2023229 514 Porphyrobacter HT-58-2 genus 45 3 1 0 1295327 1308 Croceicoccus 1 species 0 450378 Croceicoccus marinus 740 1348774 523 Croceicoccus naphthovorans species 1 0 1 0 order 67 20 12358 Caulobacterales 204458 76892 Caulobacteraceae 12291 19 family 201 1 0 no rank 1 0 81440 659 species 1 0 1759059 659 Caulobacteraceae bacterium OTSz_A_272 41275 3995 Brevundimonas 164 genus 7 0 1 2622653 1913 no rank 3 0 0 species 1 751 Brevundimonas sp. LM2 1938605 species 1 0 1827469 518 Brevundimonas sp. GW460-12-10-14-LB2 Brevundimonas sp. DS20 644 1532555 0 1 species Brevundimonas naejangsanensis 577 588932 0 1 species 41276 604 Brevundimonas vesicularis species 1 0 Brevundimonas subvibrioides 737 74313 0 1 species 0 1 135 genus 6 5527 Caulobacter 75 1 species 0 88688 Caulobacter segnis 880 761 Caulobacter henricii 69395 0 species 1 69666 Caulobacter mirabilis 1082 1 species 0 1670 Caulobacter vibrioides 155892 0 species 1 0 no rank 1 999 2648921 species 1 0 366602 999 Caulobacter sp. K31 20 Phenylobacterium 1333 2 genus 21 1 0 0 species 1 1312 Phenylobacterium zucineum 284016 Asticcacaulis 576 76890 1 0 2 genus 14 1 species 0 78587 Asticcacaulis excentricus 562 Holosporales 3180 1921002 0 1 9 11 order 0 1 3 14 family Candidatus Paracaedibacteraceae 957 1777752 1 0 genus 9 2 943 Candidatus Paracaedibacter 1521255 Candidatus Paracaedibacter acanthamoebae 934 91604 0 1 species 1032 Holosporaceae 44746 1 0 family 3 2 1 no rank 0 204454 1029 1029 endosymbiont of Acanthamoeba sp. UWC8 86106 0 species 1 family 7 3 1 0 2100208 1180 Caedimonadaceae 1509243 Candidatus Nucleicultrix 1173 2 15 genus 0 1 0 species 1 1158 Candidatus Nucleicultrix amoebiphila 1509244 Rhodobacterales 71112 204455 1 0 94 order 187 93 1129 family 0 1 31989 Rhodobacteraceae 70925 263377 2862 genus 2 0 0 no rank 1 1333 2640570 1792508 Yangia sp. CCB-MM3 1333 1 species 0 species 1 0 1229727 1529 Thiobacimonas profunda 4168 Rhodovulum 34008 0 1 54 genus 4 2631432 2309 no rank 2 0 species 1 0 1564506 1174 Rhodovulum sp. P5 1 species 0 308754 Rhodovulum sp. MB263 1135 1805 Rhodovulum sulfidophilum 35806 0 species 1 0 1 2 2 genus Planktomarina 1097 1284657 1095 Planktomarina temperata 1284658 0 species 1 1 0 genus 10 2 1350 Confluentimicrobium 1609958 no rank 1 0 2643318 1340 Confluentimicrobium sp. EMB200-NS6 1340 1609966 0 1 species Halocynthiibacter 782 1579315 0 1 2 3 genus 1579316 Halocynthiibacter arcticus 779 1 species 0 975 2211641 0 1 genus species 1 0 245188 975 Loktanella vestfoldensis 1 0 genus 2 2 1045 Tateyamaria 299261 0 1 species Tateyamaria omphalii 1043 299262 227873 Pannonibacter 1152 2 14 genus 0 1 0 species 1 1138 Pannonibacter phragmitetus 121719 Ruegeria 2470 97050 0 1 3 23 genus 89184 1647 Ruegeria pomeroyi species 1 0 2625375 800 no rank 1 0 292414 Ruegeria sp. TM1040 800 1 species 0 0 1 genus Thalassococcus 5 436357 0 1 2 5 genus Jannaschia 865 188905 860 2645469 0 no rank 1 Jannaschia sp. CCS1 860 290400 0 1 species genus 141 9 1 0 265 8214 Paracoccus Paracoccus contaminans 729 1945662 0 1 species 0 species 1 1111 Paracoccus zhejiangensis 1077935 1 no rank 0 246570 955 1 species 0 1529068 Paracoccus sp. BM15 955 34004 Paracoccus aminovorans 1031 1 species 0 0 species 1 1273 Paracoccus yeei 147645 Paracoccus sp. CBA4604 947 2065379 0 1 species Paracoccus denitrificans 1216 266 0 1 species Paracoccus aminophilus 811 34003 0 1 species 74032 Antarctobacter 1019 2 7 genus 0 1 species 1 0 74033 1012 Antarctobacter heliothermus 838 1649279 0 1 genus species 1 0 379347 838 Ruegeria mobilis no rank 2 0 58840 1424 1904441 Rhodobacteraceae bacterium 579 1 species 0 0 species 1 845 Rhodobacteraceae bacterium QY30 2033435 0 1 4 30 genus Octadecabacter 2262 53945 0 species 1 791 Octadecabacter antarcticus 1217908 1 species 0 53946 Octadecabacter arcticus 800 Octadecabacter temperatus 641 1458307 0 1 species Defluviimonas 1210 1097466 1 0 2 genus 3 0 1 species Defluviimonas alba 1207 1335048 0 1 2 6 genus Sagittula 1455 58842 1449 2624628 0 no rank 1 Sagittula sp. P11 1449 2009329 0 1 species 7 Loktanella 245186 0 genus 1 0 1 10 genus 3 1208 Ketogulonicigenium 92944 Ketogulonicigenium vulgare 640 92945 0 1 species 558 Ketogulonicigenium robustum 92947 0 species 1 7486 Phaeobacter 302485 1 0 genus 106 5 species 1 0 1844006 689 Phaeobacter porticola 0 1 species Phaeobacter piscinae 1786 1580596 0 species 1 2226 Phaeobacter gallaeciensis 60890 221822 2679 Phaeobacter inhibens species 1 0 0 1 8 genus 2 926 Thioclava 285107 1 species 0 1915078 Thioclava nitratireducens 918 1 0 genus 6 2 798 Rhodobaca 119541 1 species 0 441209 Rhodobaca barguzinensis 792 309512 1182 Dinoroseobacter 12 genus 2 0 1 1170 Dinoroseobacter shibae 215813 0 species 1 159345 1219 Roseibacterium 5 genus 2 0 1 0 species 1 1214 Roseibacterium elongatum 159346 94 genus 4 0 1 478070 3468 Labrenzia 187304 1148 Labrenzia aggregata species 1 0 no rank 2 0 2648686 2226 1674922 Labrenzia sp. CP4 1049 1 species 0 2021862 1177 Labrenzia sp. VG12 species 1 0 Roseobacter 1803 2433 1 0 3 genus 17 0 1 species Roseobacter litoralis 890 42443 species 1 0 2434 896 Roseobacter denitrificans Sulfitobacter 2385 60136 0 1 3 14 genus 1402135 1042 Sulfitobacter pseudonitzschiae species 1 0 no rank 1 0 196795 1329 1917485 Sulfitobacter sp. AM1-D1 1329 1 species 0 2 13 genus 0 1 191028 Leisingera 1409 133924 1396 Leisingera methylohalidivorans species 1 0 2 genus 4 1 0 74030 Roseovarius 944 1 species 0 215743 Roseovarius mucosus 940 Pelagibaca 1584 360528 0 1 2 6 genus 0 species 1 1578 Pelagibaca abyssi 1250539 Marivivens 563 1759396 1 0 2 genus 2 1 no rank 0 2622455 561 Marivivens sp. JLT3646 561 1920883 0 1 species Marinovum 1834 367771 0 1 2 10 genus species 1 0 42444 1824 Marinovum algicola 0 1 22 genus 5 4070 Celeribacter 875170 1758178 Celeribacter ethanolicus 877 1 species 0 species 1 0 1397108 675 Celeribacter marinus 1 species 0 1411902 Celeribacter manganoxidans 1172 1324 Celeribacter indicus 1208324 0 species 1 Rhodobacter 5717 1060 1 0 5 genus 73 196779 2050 no rank 2 0 0 species 1 1112 Rhodobacter sp. CZR27 2033869 1850250 Rhodobacter sp. LPB0142 938 1 species 0 species 1 0 1061 970 Rhodobacter capsulatus species 1 0 1063 2624 Rhodobacter sphaeroides no rank 8 0 82117 7029 1632780 1358 Phreatobacter 32 genus 2 0 1 1326 Phreatobacter sp. S-12 1868589 0 species 1 1 0 genus 68 2 1517 Polymorphum 991903 species 1 0 991904 1449 Polymorphum gilvum 1 0 2 genus 10 Micavibrio 1066 213485 species 1 0 349221 1056 Micavibrio aeruginosavorus 0 clade 2 3088 62654 767891 Candidatus Puniceispirillum 3088 2 genus 32 1 0 0 species 1 3056 Candidatus Puniceispirillum marinum 767892 2833 2800060 0 6 order 1 0 family 55 6 2833 Hyphomonadaceae 69657 1239 Hirschia 2723 1 0 genus 19 2 0 species 1 1220 Hirschia baltica 2724 85 Hyphomonas 1539 3 genus 53 1 0 no rank 1 0 2630699 799 799 Hyphomonas sp. Mor2 1906738 0 species 1 0 1 species Hyphomonas neptunium 687 81032 638 Magnetococcales 1191478 1 0 order 7 4 family 10 3 1 0 1191479 631 Magnetococcaceae Magnetococcus 621 162171 1 0 2 genus 2 Magnetococcus marinus 619 1124597 0 1 species 2800059 1136 2 order 0 1136 2800061 0 2 family 1136 Maricaulis 74317 0 1 28 genus 2 74318 Maricaulis maris 1108 1 species 0 4 6 order 0 1 255473 Parvularculales 829 0 1 3 21 family Parvularculaceae 823 255474 0 1 2 44 genus Parvularcula 802 208215 208216 Parvularcula bermudensis 758 1 species 0 Rhizobiales 166648 356 1 0 212 order 1097 0 no rank 6 3322 119042 1734920 Pseudorhodoplanes 1047 2 32 genus 0 1 1235591 1015 Pseudorhodoplanes sinuspersici species 1 0 2 32 genus 0 1 1484898 Methyloceanibacter 1013 1 species 0 1384459 Methyloceanibacter caenitepidi 981 22 genus 2 0 1 1572860 1262 Hartmannibacter 1482074 Hartmannibacter diazotrophicus 1240 1 species 0 18 family 29 1 0 772 Bartonellaceae 19741 773 Bartonella 19712 17 445 genus 0 1 1054 Bartonella henselae 38323 0 species 1 388640 800 Bartonella australis species 1 0 species 1 0 1318743 1077 Bartonella ancashensis 33045 1155 Bartonella grahamii species 1 0 1087 Bartonella vinsonii 33047 0 species 1 1686310 Bartonella apis 1249 1 species 0 85701 Bartonella tribocorum 1166 1 species 0 no rank 6 0 2645622 8025 1 species 0 1933907 Bartonella sp. JB63 1343 species 1 0 1933910 1334 Bartonella sp. A1379B 515256 1341 Bartonella sp. 1-1C species 1 0 1933906 Bartonella sp. JB15 1346 1 species 0 0 1 species Bartonella sp. WD16.2 1342 1933904 Bartonella sp. Raccoon60 1319 1933912 0 1 species 1 species 0 56426 Bartonella clarridgeiae 1265 species 1 0 774 1394 Bartonella bacilliformis 0 1 species Bartonella quintana 995 803 2572 Methylocystaceae 31993 1 0 family 18 6 Methylosinus 1014 425 1 0 2 genus 19 995 Methylosinus trichosporium 426 0 species 1 3 genus 35 1 0 133 Methylocystis 1540 719 2625913 0 no rank 1 1 species 0 187303 Methylocystis sp. SC2 719 species 1 0 655015 786 Methylocystis bryophila 0 1 259 family 26 31737 Bradyrhizobiaceae 41294 0 1 11 507 genus Bradyrhizobium 16109 374 6 no rank 0 2631580 8341 0 1 species Bradyrhizobium sp. SK17 1507 2057741 0 species 1 1251 Bradyrhizobium sp. 376 1 species 0 115808 Bradyrhizobium sp. ORS 285 1304 0 1 species Bradyrhizobium sp. ORS 278 1498 114615 1 species 0 288000 Bradyrhizobium sp. BTAi1 1408 1223566 1373 Bradyrhizobium sp. CCGE-LA001 species 1 0 1449 Bradyrhizobium oligotrophicum 44255 0 species 1 1 species 0 1355477 Bradyrhizobium diazoefficiens 2353 375 2185 Bradyrhizobium japonicum species 1 0 species 1 0 1274631 1274 Bradyrhizobium icense 890 Variibacter 1649510 0 1 15 genus 2 875 Variibacter gotjawalensis 1333996 0 species 1 2 85 genus 0 1 1073 Rhodopseudomonas 7301 0 species 1 7216 Rhodopseudomonas palustris 1076 85413 4847 Bosea 137 genus 5 0 1 0 species 1 1250 Bosea vaviloviae 1526658 0 no rank 3 3460 2653178 1842539 Bosea sp. RAC05 1268 1 species 0 997 Bosea sp. PAMC 26642 1792307 0 species 1 species 1 0 2015316 1195 Bosea sp. AS-1 Oligotropha 744 40136 0 1 2 6 genus species 1 0 40137 738 Oligotropha carboxidovorans Nitrobacter 1587 911 0 1 3 36 genus 0 species 1 647 Nitrobacter winogradskyi 913 0 species 1 904 Nitrobacter hamburgensis 912 3621 Xanthobacteraceae 335928 1 0 family 42 7 1211 Xanthobacter 279 0 1 19 genus 2 1192 Xanthobacter autotrophicus 280 0 species 1 1288 Starkeya 152053 0 1 45 genus 2 Starkeya novella 1243 921 0 1 species 6 1080 Azorhizobium 25 genus 2 0 1 0 1 species Azorhizobium caulinodans 1055 7 family 118 19 1 0 45401 10685 Hyphomicrobiaceae 0 1 41 genus 2 1463 Rhodoplanes 29407 1 no rank 0 2619116 1422 Rhodoplanes sp. Z2-YC6860 1422 674703 0 1 species 2882 Hyphomicrobium 81 1 0 genus 70 4 1427356 Hyphomicrobium nitrativorans 712 1 species 0 0 species 1 1191 Hyphomicrobium denitrificans 53399 909 2619925 0 no rank 1 909 Hyphomicrobium sp. MC1 717785 0 species 1 0 1 2 19 genus Pelagibacterium 778 1082930 1 species 0 531813 Pelagibacterium halotolerans 759 1106 Blastochloris 59282 0 1 29 genus 2 species 1 0 1079 1077 Blastochloris viridis genus 22 2 1 0 1068 772 Rhodomicrobium 1069 Rhodomicrobium vannielii 750 1 species 0 4 77 genus 0 1 46913 Devosia 2881 196773 2804 no rank 3 0 1 species 0 2083786 Devosia sp. I507 741 1643450 906 Devosia sp. H5989 species 1 0 0 species 1 1157 Devosia sp. A16 1736675 Filomicrobium 685 119044 0 1 2 18 genus 0 species 1 667 Candidatus Filomicrobium marinum 1608628 45404 1510 Beijerinckiaceae 10 family 5 0 1 0 1 2 6 genus Beijerinckia 726 532 533 Beijerinckia indica 720 1 species 0 774 Methylocella 120652 0 1 17 genus 2 757 Methylocella silvestris 199596 0 species 1 0 1 61 family 15 17897 Methylobacteriaceae 119045 Methylobacterium 10438 407 0 1 9 517 genus 0 species 1 1386 Methylobacterium nodulans 114616 species 1 0 31998 1206 Methylobacterium radiotolerans Methylobacterium oryzae 1047 334852 0 1 species 1554 Methylobacterium aquaticum 270351 0 species 1 Methylobacterium phyllosphaerae 1007 418223 0 1 species 2615210 3721 3 no rank 0 1 species 0 1479019 Methylobacterium sp. C1 1132 species 1 0 426117 1641 Methylobacterium sp. 4-46 0 1 species Methylobacterium sp. AMS5 948 925818 Microvirga 1264 186650 1 0 2 genus 21 1882682 1243 Microvirga ossetica species 1 0 3 genus 0 2282523 6134 0 species 1 1757 Methylobacterium populi 223967 0 1 species Methylobacterium zatmanii 856 29429 0 species 1 3521 Methylobacterium extorquens 408 15718 Phyllobacteriaceae 69277 0 1 93 family 20 Phyllobacterium 817 28100 0 1 2 23 genus species 1 0 1867719 794 Phyllobacterium zundukense 1 0 genus 19 2 1203 Aminobacter 31988 1 species 0 83263 Aminobacter aminovorans 1184 Mesorhizobium 10780 68287 1 0 9 genus 391 1 species 0 2066070 Mesorhizobium japonicum 1243 1 no rank 0 325217 1294 0 species 1 1294 Mesorhizobium sp. WSM1497 278153 Mesorhizobium loti 1222 381 0 1 species 536018 1159 Mesorhizobium australicum species 1 0 593909 1296 Mesorhizobium opportunistum species 1 0 71433 Mesorhizobium amorphae 1307 1 species 0 1589 Mesorhizobium ciceri 39645 0 species 1 1 species 0 1670800 Mesorhizobium sp. B7 1279 23 genus 2 0 1 449972 734 Chelativorans 2643807 711 no rank 1 0 711 Chelativorans sp. BNC1 266779 0 species 1 1193 Hoeflea 274591 1 0 genus 30 2 2614931 1163 no rank 1 0 1163 Hoeflea sp. IMCC20628 1620421 0 species 1 Nitratireductor 898 245876 1 0 2 genus 20 species 1 0 472175 878 Nitratireductor basaltis 4 14 family 0 1 2036754 Chelatococcaceae 2548 1 0 genus 82 3 2534 Chelatococcus 28209 1087 Chelatococcus daeguensis 444444 0 species 1 1365 2638111 0 1 no rank 1702325 Chelatococcus sp. CO-6 1365 1 species 0 Rhizobiaceae 45586 82115 0 1 55 300 family 323620 Shinella 1381 2 12 genus 0 1 1369 2643062 0 1 no rank species 1 0 879274 1369 Shinella sp. HZN7 no rank 36 0 227290 27808 Agrobacterium 6648 357 0 1 7 139 genus 1485 2632611 0 no rank 2 0 species 1 630 Agrobacterium sp. H13-3 861208 0 species 1 855 Agrobacterium sp. RAC06 1842536 3615 1183400 0 species group 2 0 species 1 2988 Agrobacterium tumefaciens 358 species 1 0 1176649 627 Agrobacterium fabrum 373 Agrobacterium vitis 716 1 species 0 0 1 species Agrobacterium rhizogenes 693 359 genus 12 2 1 0 1525371 1458 Neorhizobium 0 1 species Neorhizobium galegae 1446 399 379 Rhizobium 19702 27 1334 genus 0 1 0 species 1 4603 Rhizobium leguminosarum 384 species 1 0 396 1464 Rhizobium phaseoli 0 no rank 21 8138 2613769 0 species 1 132 Rhizobium sp. N1314 1703961 748 Rhizobium sp. 10195 2028343 0 species 1 1301032 604 Rhizobium sp. IE4771 species 1 0 Rhizobium sp. N621 1 1703964 0 1 species 565 Rhizobium sp. NXC14 1981173 0 species 1 Rhizobium sp. N6212 1 1703965 0 1 species 680 Rhizobium sp. NT-26 1125847 0 species 1 2020311 Rhizobium sp. Kim5 601 1 species 0 1 species 0 1703967 Rhizobium sp. N741 3 0 1 species Rhizobium sp. NXC24 795 2048897 1 species 0 1703962 Rhizobium sp. N1341 5 1 species 0 424182 Rhizobium sp. IRBG74 528 Rhizobium sp. N731 132 1703966 0 1 species 2020312 Rhizobium sp. CIAT894 641 1 species 0 479 Rhizobium sp. S41 1869170 0 species 1 species 1 0 1703968 7 Rhizobium sp. N871 2020313 Rhizobium sp. TAL182 203 1 species 0 853 Rhizobium sp. ACO-34A 1571470 0 species 1 0 species 1 8 Rhizobium sp. N113 1703960 species 1 0 1703969 640 Rhizobium sp. N324 0 1 species Rhizobium sp. Y9 512 1914541 0 species 1 2349 Rhizobium etli 29449 species 1 0 398 727 Rhizobium tropici 0 species 1 1087 Rhizobium gallicum 56730 227292 10758 10 no rank 0 genus 212 7 1 0 28105 8782 Sinorhizobium 110321 Sinorhizobium medicae 834 1 species 0 0 no rank 2 1956 2613772 0 species 1 1058 Sinorhizobium sp. RAC02 1842534 0 1 species Sinorhizobium sp. CCBAU 05631 898 794846 194963 1103 Sinorhizobium americanum species 1 0 382 Sinorhizobium meliloti 2149 1 species 0 1 species group 0 663276 2528 380 2528 Sinorhizobium fredii species 1 0 3 27 genus 0 1 106591 Ensifer 1976 species 1 0 106592 1130 Ensifer adhaerens species 1 0 716925 819 Ensifer sojae 5339 Liberibacter 34019 0 1 72 genus 6 1201 Candidatus Liberibacter americanus 309868 0 species 1 1 species 0 1273132 Liberibacter crescens 1256 species 1 0 34020 1013 Candidatus Liberibacter africanus 1 species 0 34021 Candidatus Liberibacter asiaticus 870 0 1 species Candidatus Liberibacter solanacearum 927 556287 0 1 21 family 7 4052 Aurantimonadaceae 255475 genus 24 2 1 0 414371 1020 Aureimonas 996 2615206 0 no rank 1 species 1 0 1349819 996 Aureimonas sp. AU20 1 0 genus 94 4 3011 Martelella 293088 1 no rank 0 2629616 992 0 species 1 992 Martelella sp. AD-3 686597 Martelella endophytica 774 1486262 0 1 species species 1 0 293089 1151 Martelella mediterranea 1 0 3 family 5 Rhodobiaceae 1200 119043 genus 25 2 1 0 256616 1195 Parvibaculum 256618 Parvibaculum lavamentivorans 1170 1 species 0 118882 Brucellaceae 5362 20 21 family 0 1 5 genus 50 1 0 528 Ochrobactrum 2997 0 1 species Ochrobactrum pseudogrignonense 768 419475 682 Ochrobactrum anthropi 529 0 species 1 species 1 0 571256 900 Ochrobactrum pituitosum 271865 597 Ochrobactrum sp. A44 species 1 0 2344 Brucella 234 0 1 777 genus 14 1 species 0 29459 Brucella melitensis 56 235 80 Brucella abortus species 1 0 Brucella canis 126 36855 0 1 species 1 species 0 120576 Brucella pinnipedialis 127 Brucella vulpis 160 981386 0 1 species Brucella ovis 37 236 0 1 species 29461 Brucella suis 164 1 species 0 Brucella microti 40 444163 0 1 species 654 2632610 0 4 no rank 199 Brucella sp. 141012304 1885919 0 species 1 0 1 species Brucella sp. 2002734562 36 1891098 species 1 0 1844051 222 Brucella sp. 09RB8910 1149952 197 Brucella sp. 09RB8471 species 1 0 species 1 0 120577 123 Brucella ceti Rickettsiales 32439 766 1 0 56 order 49 0 no rank 1 2237 1699067 species 1 0 1528098 2237 Rickettsiales bacterium Ac37b 3 family 2 1 0 1328881 Candidatus Midichloriaceae 885 883 Candidatus Midichloria 411566 0 1 16 genus 2 234827 867 Candidatus Midichloria mitochondrii species 1 0 family 21 28 1 0 775 13763 Rickettsiaceae tribe 25 0 33988 12806 2 genus 1 1 0 69474 Orientia 1893 0 1 species Orientia tsutsugamushi 1892 784 0 1 23 1066 genus Rickettsia 10913 780 114292 2214 2 species group 0 Rickettsia prowazekii 1114 782 0 1 species 1100 Rickettsia typhi 785 0 species 1 0 species group 2 2114 1129742 0 species 1 1250 Rickettsia bellii 33990 1 species 0 788 Rickettsia canadensis 864 4386 114277 0 species group 17 0 1 species Rickettsia heilongjiangensis 141 226665 781 Rickettsia conorii 76 1 species 0 35790 134 Rickettsia japonica species 1 0 species 1 0 1105106 110 Rickettsia philipii 284 Rickettsia rhipicephali 33992 0 species 1 783 Rickettsia rickettsii 154 1 species 0 42862 670 Rickettsia felis species 1 0 702 Rickettsia australis 787 0 species 1 0 1 species Rickettsia akari 454 786 0 species 1 83 Rickettsia parkeri 35792 1 species 0 33991 Rickettsia montanensis 151 0 1 species Rickettsia monacensis 509 109232 47589 Rickettsia peacockii 388 1 species 0 0 1 species Rickettsia slovaca 53 35794 0 1 species Rickettsia amblyommatis 234 33989 35791 166 Rickettsia massiliae species 1 0 0 species 1 77 Rickettsia africae 35788 no rank 1 0 114295 1133 1133 Rickettsia endosymbiont of Bemisia tabaci 337479 0 species 1 2115980 936 Candidatus Phycorickettsia genus 8 2 1 0 0 species 1 928 Candidatus Phycorickettsia trachydisci 2115978 942 Anaplasmataceae 15505 23 37 family 0 1 763 Anaplasma 768 0 1 17 genus 4 180 Anaplasma centrale 769 0 species 1 770 Anaplasma marginale 238 1 species 0 328 106179 0 1 species group 0 1 species Anaplasma phagocytophilum 328 948 0 8 tribe 6899 952 1 0 8 genus 184 Wolbachia 6899 953 no rank 7 0 2640676 6715 species 1 0 77551 798 Wolbachia endosymbiont of Onchocerca volvulus Wolbachia endosymbiont of Cimex lectularius 668 246273 0 1 species 797 Wolbachia endosymbiont of Onchocerca ochengi 100901 0 species 1 species 1 0 66084 896 Wolbachia sp. wRi species 1 0 163164 852 Wolbachia endosymbiont of Drosophila melanogaster 893 Wolbachia endosymbiont of Brugia malayi 80849 0 species 1 species 1 0 77038 1811 Wolbachia endosymbiont of Drosophila simulans genus 15 4 1 0 33993 1125 Neorickettsia 0 species 1 402 Neorickettsia risticii 950 Neorickettsia helminthoeca 336 33994 0 1 species 951 372 Neorickettsia sennetsu species 1 0 0 1 6 64 genus Ehrlichia 6681 943 1095 106181 0 1 no rank 1 species 0 391036 Ehrlichia sp. HF 1095 0 4 species group 5522 106178 Ehrlichia ruminantium 1670 779 0 1 species 1163 Ehrlichia muris 35795 0 species 1 1 species 0 944 Ehrlichia canis 1464 1225 Ehrlichia chaffeensis 945 0 species 1 355 333 class 0 1 28216 Betaproteobacteria 244314 33809 1577 2 no rank 0 species 1 0 543913 493 beta proteobacterium CB species 1 0 1904640 1084 Betaproteobacteria bacterium GR16-43 206351 Neisseriales 15465 37 131 order 0 1 481 9012 Neisseriaceae family 45 23 1 0 Eikenella 385 538 1 0 2 genus 5 380 Eikenella corrodens 539 0 species 1 genus 19 3 1 0 59 995 Vitreoscilla 2627922 558 no rank 1 0 1 species 0 96942 Vitreoscilla sp. C1 558 0 species 1 418 Vitreoscilla filiformis 63 71 427 Simonsiella genus 1 2 1 0 Simonsiella muelleri 426 72 0 1 species 699 Snodgrassella 1193515 1 0 genus 8 2 0 1 species Snodgrassella alvi 691 1196083 482 5539 Neisseria 90 genus 12 0 1 0 species 1 1601 Neisseria meningitidis 487 0 species 1 290 Neisseria zoodegmatis 326523 1 species 0 486 Neisseria lactamica 508 1 species 0 1853278 Neisseria sp. 10023 468 species 1 0 495 303 Neisseria elongata 0 1 species Neisseria sicca 381 490 485 471 Neisseria gonorrhoeae species 1 0 0 species 1 381 Neisseria mucosa 488 0 2 no rank 726 2623750 0 species 1 307 Neisseria sp. 10022 1853276 Neisseria sp. KEM232 419 655307 0 1 species 1 species 0 28091 Neisseria weaveri 320 421605 922 no rank 1 0 0 species 1 922 Neisseriaceae bacterium DSM 100970 2052837 0 1 105 family 13 6322 Chromobacteriaceae 1499392 568394 Pseudogulbenkiania 822 2 genus 16 1 0 1 no rank 0 2642558 806 species 1 0 748280 806 Pseudogulbenkiania sp. NH8B 2 18 genus 0 1 885864 Jeongeupia 777 2619593 759 no rank 1 0 1906741 759 Jeongeupia sp. USM3 species 1 0 13 genus 2 0 1 168470 671 Laribacter Laribacter hongkongensis 658 168471 0 1 species 90153 3070 no rank 4 0 535 Chromobacterium 3070 4 79 genus 0 1 0 1 species Chromobacterium vaccinii 1234 1108595 536 937 Chromobacterium violaceum species 1 0 820 2641838 0 1 no rank 820 Chromobacterium sp. ATCC 53434 2059672 0 species 1 Aquaspirillum 877 187 0 1 2 11 genus 866 2620219 0 1 no rank 1938604 Aquaspirillum sp. LM1 866 1 species 0 Burkholderiales 195123 80840 0 1 236 1497 order 947 80841 0 no rank 2 1469502 Burkholderiales bacterium GJ-E10 581 1 species 0 366 Burkholderiales bacterium YL45 1834205 0 species 1 1 0 29 family 111 Oxalobacteraceae 18208 75682 Collimonas 2906 202907 1 0 4 genus 65 Collimonas fungivorans 917 158899 0 1 species Collimonas pratensis 843 279113 0 1 species 1 species 0 279058 Collimonas arenae 1081 1 0 6 genus 74 Herbaspirillum 4382 963 Herbaspirillum rubrisubalbicans 584 80842 0 1 species 1141 Herbaspirillum hiltneri 341045 0 species 1 2624150 689 no rank 1 0 0 1 species Herbaspirillum sp. meg3 689 2025949 1 species 0 964 Herbaspirillum seropedicae 1011 species 1 0 92645 883 Herbaspirillum frisingense 29580 Janthinobacterium 4420 7 81 genus 0 1 2610881 2685 4 no rank 0 0 species 1 447 Janthinobacterium sp. Marseille 375286 species 1 0 1938606 826 Janthinobacterium sp. LM6 species 1 0 1644131 899 Janthinobacterium sp. 1_2014MBL_MicDiv 1236179 513 Janthinobacterium sp. B9-8 species 1 0 Janthinobacterium agaricidamnosum 807 55508 0 1 species Janthinobacterium svalbardensis 847 368607 0 1 species 149698 Massilia 5175 6 98 genus 0 1 1 species 0 2072590 Massilia sp. ZMN-3 984 1974 2609279 0 no rank 2 1707785 1123 Massilia sp. WG5 species 1 0 0 species 1 851 Massilia sp. NR 4-1 1678028 species 1 0 1141883 1124 Massilia putida 2045208 995 Massilia sp. B2 species 1 0 0 1 3 11 genus Herminiimonas 879 303379 Herminiimonas arsenitoxidans 402 1809410 0 1 species 0 species 1 466 Herminiimonas arsenicoxydans 204773 genus 3 2 1 0 846 335 Oxalobacter 847 332 Oxalobacter formigenes species 1 0 Alcaligenaceae 29009 506 1 0 44 family 191 genus 10 2 1 0 507 1608 Alcaligenes 1598 Alcaligenes faecalis 511 0 species 1 10 genus 3 0 1 290425 964 Advenella 310575 400 Advenella kashmirensis species 1 0 0 1 species Advenella mimigardefordensis 554 302406 1 0 genus 9 2 454 Paenalcaligenes 1100891 643674 445 Paenalcaligenes hominis species 1 0 8945 Achromobacter 222 0 1 227 genus 6 0 1 no rank 884 2626865 0 species 1 884 Achromobacter sp. AONIH1 1758194 217203 Achromobacter spanius 1440 1 species 0 species 1 0 217204 865 Achromobacter insolitus 85698 3674 Achromobacter xylosoxidans species 1 0 1 species 0 32002 Achromobacter denitrificans 1855 1472344 Basilea 460 2 genus 2 1 0 458 Basilea psittacipulmonis 1472345 0 species 1 Taylorella 1536 29574 1 0 3 genus 2 Taylorella asinigenitalis 765 84590 0 1 species 1 species 0 29575 Taylorella equigenitalis 769 1 0 2 genus 12 Orrella 708 1921582 0 species 1 696 Orrella dioscoreae 1851544 2 4 genus 0 1 90243 Oligella 423 1 species 0 90245 Oligella urethralis 419 17 342 genus 0 1 517 Bordetella 12448 598 Bordetella genomosp. 9 1416803 0 species 1 Bordetella genomosp. 8 828 1416806 0 1 species 519 Bordetella parapertussis 867 1 species 0 667 2630031 0 no rank 1 Bordetella sp. H567 667 1697043 0 1 species 123899 590 Bordetella trematum species 1 0 0 1 species Bordetella avium 394 521 Bordetella bronchialis 814 463025 0 1 species 0 species 1 910 Bordetella genomosp. 6 463024 35814 407 Bordetella holmesii species 1 0 Bordetella hinzii 735 103855 0 1 species species 1 0 94624 743 Bordetella petrii 1 species 0 520 Bordetella pertussis 798 1331258 637 Bordetella pseudohinzii species 1 0 0 species 1 1639 Bordetella bronchiseptica 518 1 species 0 463014 Bordetella flabilis 663 species 1 0 463040 816 Bordetella genomosp. 13 0 1 5 genus 2 544 Pusillimonas 305976 no rank 1 0 2640016 539 1007105 539 Pusillimonas sp. T7-7 species 1 0 14 genus 2 0 1 359336 728 Castellaniella 0 1 species Castellaniella defragrans 714 75697 Comamonadaceae 35742 80864 1 0 59 family 433 238749 584 Diaphorobacter genus 1 2 1 0 1 species 0 1546149 Diaphorobacter polyhydroxybutyrativorans 583 662 Melaminivora 1649468 1 0 genus 20 2 0 no rank 1 642 2641902 species 1 0 2109913 642 Melaminivora sp. SC2-9 352450 Simplicispira 549 2 5 genus 0 1 Simplicispira sp. SC1-8 544 2109915 0 1 species 52972 Polaromonas 2396 3 10 genus 0 1 1 no rank 0 2638319 1471 0 species 1 1471 Polaromonas sp. JS666 296591 216465 915 Polaromonas naphthalenivorans species 1 0 1 0 5 genus 125 Variovorax 7059 34072 2239 663243 0 2 no rank 0 1 species Variovorax sp. PMC12 1229 2126319 Variovorax sp. PAMC 28711 1010 1795631 0 1 species species 1 0 34073 3464 Variovorax paradoxus 0 1 species Variovorax boronicumulans 1231 436515 665874 749 Limnohabitans 10 genus 3 0 1 739 2626134 0 no rank 2 0 species 1 287 Limnohabitans sp. 103DPR2 1678129 species 1 0 1678128 452 Limnohabitans sp. 63ED37-2 genus 22 4 1 0 47420 2306 Hydrogenophaga 1707 2610897 0 2 no rank Hydrogenophaga sp. PBC 879 795665 0 1 species 0 1 species Hydrogenophaga sp. RAC07 828 1842537 Hydrogenophaga crassostreae 577 1763535 0 1 species 0 genus 1 586 2678886 1 species 0 2116657 Melaminivora sp. SC2-7 586 283 Comamonas 2881 4 genus 32 1 0 0 1 species Comamonas testosteroni 1190 285 0 1 species Comamonas serinivorans 1081 1082851 Comamonas kerstersii 578 225992 0 1 species 0 2 genus 1000 2490452 1458425 Comamonadaceae bacterium A1 504 1 species 0 species 1 0 1458426 496 Comamonadaceae bacterium B1 1136 Ottowia 219181 1 0 genus 5 3 no rank 1 0 2645081 459 species 1 0 1658672 459 Ottowia sp. oral taxon 894 Ottowia sp. KADR8-3 672 2109914 0 1 species 1 0 genus 12 2 919 Alicycliphilus 201096 0 1 species Alicycliphilus denitrificans 907 179636 1 0 5 genus 26 Rhodoferax 2467 28065 Rhodoferax antarcticus 555 81479 0 1 species 1484693 436 Rhodoferax saidenbachensis species 1 0 species 1 0 192843 548 Rhodoferax ferrireducens 1 species 0 1842727 Rhodoferax koreense 902 80865 Delftia 3843 5 genus 109 1 0 180282 909 Delftia tsuruhatensis species 1 0 0 1 species Delftia acidovorans 868 80866 2 no rank 0 2613839 1957 742013 Delftia sp. Cs1-4 1026 1 species 0 1920191 Delftia sp. HK171 931 1 species 0 174951 Ramlibacter 1767 2 20 genus 0 1 1747 Ramlibacter tataouinensis 94132 0 species 1 444 Candidatus Symbiobacter 1436289 0 1 1 genus 2 1 species 0 1436290 Candidatus Symbiobacter mobilis 443 12916 4878 Acidovorax genus 184 9 1 0 1 species 0 721785 Acidovorax ebreus 570 2194 2684926 0 4 no rank 0 species 1 539 Acidovorax sp. KKS102 358220 550 Acidovorax sp. RAC01 1842533 0 species 1 232721 522 Acidovorax sp. JS42 species 1 0 species 1 0 1858609 583 Acidovorax sp. T1 80869 735 Acidovorax citrulli species 1 0 0 1 species Acidovorax avenae 762 80867 Acidovorax sp. NA3 433 553814 0 1 species Verminephrobacter 1083 364316 0 1 2 8 genus species 1 0 364317 1075 Verminephrobacter eiseniae no rank 17 0 224471 9899 1118 Mitsuaria 65047 1 0 genus 25 2 1 no rank 0 2648776 1093 0 1 species Mitsuaria sp. 7 1093 1658665 genus 29 2 1 0 88 1114 Leptothrix 0 1 species Leptothrix cholodnii 1085 34029 1 0 2 genus 28 Methylibium 927 316612 1 species 0 105560 Methylibium petroleiphilum 899 genus 15 2 1 0 318147 843 Paucibacter 2642959 828 no rank 1 0 1 species 0 1768242 Paucibacter sp. KCTC 42545 828 0 1 species [Polyangium] brachysporum 1239 413882 212743 1278 Rhizobacter genus 31 2 1 0 946333 Rhizobacter gummiphilus 1247 1 species 0 2 29 genus 0 1 28067 Rubrivivax 1299 species 1 0 28068 1270 Rubrivivax gelatinosus 93681 Roseateles 1023 2 30 genus 0 1 76731 993 Roseateles depolymerans species 1 0 0 1 23 genus 2 1058 Thiomonas 32012 1035 Thiomonas intermedia 926 0 species 1 119060 Burkholderiaceae 99821 84 461 family 0 1 12213 Paraburkholderia 1822464 0 1 200 genus 12 36873 1093 Paraburkholderia xenovorans species 1 0 Paraburkholderia caribensis 1831 75105 0 1 species 894 Paraburkholderia sprentiae 948107 0 species 1 959 2615204 0 1 no rank 0 1 species Paraburkholderia sp. SOS3 959 1926494 0 1 species Paraburkholderia phytofirmans 1516 261302 1 species 0 134537 Paraburkholderia fungorum 838 169430 Paraburkholderia hospita 1170 1 species 0 2026199 970 Paraburkholderia aromaticivorans species 1 0 Paraburkholderia terrae 992 311230 0 1 species 148447 932 Paraburkholderia phymatum species 1 0 252970 818 Paraburkholderia phenoliruptrix species 1 0 1 0 41 genus 2244 Burkholderia 57689 32008 27286 87882 0 19 species group 1 species 0 488729 Burkholderia metallica 659 1 species 0 482957 Burkholderia lata 1854 488447 Burkholderia contaminans 1078 1 species 0 1207504 Burkholderia pseudomultivorans 763 1 species 0 0 1 species Burkholderia cenocepacia 3896 95486 152500 Burkholderia dolosa 744 1 species 0 1503054 Burkholderia stagnalis 819 1 species 0 1 species 0 60552 Burkholderia vietnamiensis 1395 488732 578 Burkholderia diffusa species 1 0 0 species 1 4704 Burkholderia cepacia 292 1 species 0 101571 Burkholderia ubonensis 2873 species 1 0 87883 1824 Burkholderia multivorans 152480 Burkholderia ambifaria 1124 1 species 0 0 species 1 750 [Pseudomonas] mesoacidophila 265293 60550 630 Burkholderia pyrrocinia species 1 0 1 species 0 488446 Burkholderia latens 928 Burkholderia territorii 566 1503055 0 1 species Burkholderia stabilis 1385 95485 0 1 species 0 species 1 716 Burkholderia seminalis 488731 41899 1181 Burkholderia plantarii species 1 0 111527 14405 7 species group 0 57975 Burkholderia thailandensis 2235 1 species 0 1153 Burkholderia oklahomensis 342113 0 species 1 1 species 0 1637837 Burkholderia sp. MSMB0266 961 0 1 species Burkholderia mallei 1484 13373 1002 Burkholderia sp. MSMB0852 1637841 0 species 1 0 species 1 6573 Burkholderia pseudomallei 28450 1637831 997 Burkholderia sp. MSMB617WGS species 1 0 Burkholderia gladioli 1981 28095 0 1 species 8569 2613784 0 11 no rank Burkholderia sp. RPE67 1094 758796 0 1 species 589 Burkholderia sp. PAMC 26561 1795043 0 species 1 669 Burkholderia sp. Bp7605 1740163 0 species 1 1097668 Burkholderia sp. YI23 1041 1 species 0 0 species 1 782 Burkholderia sp. CCGE1001 640510 species 1 0 1740162 684 Burkholderia sp. Bp5365 701 Burkholderia sp. 2002721687 1468409 0 species 1 566 Burkholderia sp. PAMC 28687 1795874 0 species 1 416344 692 Burkholderia sp. KJ006 species 1 0 species 1 0 640512 780 Burkholderia sp. CCGE1003 971 Burkholderia sp. HB1 1678678 0 species 1 337 Burkholderia glumae 2023 1 species 0 genus 120 5 1 0 48736 6967 Ralstonia species 1 0 305 3455 Ralstonia solanacearum 329 1459 Ralstonia pickettii species 1 0 1 species 0 190721 Ralstonia insidiosa 904 1029 Ralstonia mannitolilytica 105219 0 species 1 106589 11701 Cupriavidus 308 genus 9 0 1 0 no rank 2 3057 2640874 1450 Cupriavidus sp. USMAHM13 1389192 0 species 1 species 1 0 876364 1607 Cupriavidus sp. USMAA2-4 1 species 0 119219 Cupriavidus metallidurans 1711 0 species 1 1753 Cupriavidus necator 106590 0 1 species Cupriavidus basilensis 1656 68895 species 1 0 82541 1008 Cupriavidus gilardii 0 1 species Cupriavidus sp. USMAA1020 1315 367825 0 species 1 893 Cupriavidus pinatubonensis 248026 2571159 421 1 genus 0 0 species 1 421 Paraburkholderia rhizoxinica 412963 7817 Pandoraea 93217 1 0 genus 109 10 1 species 0 93222 Pandoraea sputorum 576 1772 Pandoraea pulmonicola 93221 0 species 1 0 1 species Pandoraea vervacti 659 656178 0 1 species Pandoraea norimbergensis 927 93219 0 species 1 668 Pandoraea apista 93218 0 1 species Pandoraea pnomenusa 1001 93220 1 species 0 573737 Pandoraea oxalativorans 902 656179 563 Pandoraea faecigallinarum species 1 0 640 Pandoraea thiooxydans 445709 0 species 1 0 genus 1 971 1827195 758793 Burkholderia sp. RPE64 971 1 species 0 Polynucleobacter 1581 44013 0 1 4 19 genus 576610 Polynucleobacter necessarius 388 1 species 0 696 Polynucleobacter asymbioticus 576611 0 species 1 0 species 1 478 Polynucleobacter duraquae 1835254 0 1 22 116 order Rhodocyclales 11758 206389 663 Azonexaceae 2008795 0 1 9 family 3 654 Dechloromonas 73029 0 1 11 genus 2 259537 Dechloromonas aromatica 643 1 species 0 2145 Rhodocyclaceae 75787 1 0 family 36 6 0 1 2 12 genus Aromatoleum 793 551759 1 species 0 551760 Aromatoleum aromaticum 781 genus 14 2 1 0 146937 733 Azospira 1 species 0 146939 Azospira oryzae 719 75788 583 no rank 1 0 0 species 1 583 Rhodocyclaceae bacterium 1898103 8834 Zoogloeaceae 2008794 0 1 143 family 12 110 genus 5 0 1 12960 3916 Azoarcus 418699 881 Azoarcus olearius species 1 0 2184 2629479 0 no rank 2 1 species 0 198107 Azoarcus sp. CIB 1093 Azoarcus sp. KH32C 1091 748247 0 1 species 1 species 0 2067960 Azoarcus sp. SY39 741 0 1 125 genus 6 4775 Thauera 33057 96773 853 Thauera chlorobenzoica species 1 0 2609274 2178 no rank 2 0 species 1 0 85643 1188 Thauera sp. MZ1T 990 Thauera sp. K11 2005884 0 species 1 species 1 0 1134435 836 Thauera humireducens 0 species 1 783 Thauera aromatica 59405 32003 Nitrosomonadales 13409 44 111 order 0 1 Thiobacillaceae 718 2008790 1 0 3 family 14 genus 12 2 1 0 919 704 Thiobacillus Thiobacillus denitrificans 692 36861 0 1 species 1009 Gallionellaceae 90627 1 0 family 29 5 0 1 3 genus 2 396 Gallionella 96 1 species 0 370405 Gallionella capsiferriformans 393 314343 Sideroxydans 584 2 5 genus 0 1 579 Sideroxydans lithotrophicus 63745 0 species 1 0 family 4 1006 2772226 Sulfuriferula 480 1778653 1 0 2 genus 4 0 no rank 1 476 2637784 1985873 Sulfuriferula sp. AH1 476 1 species 0 1 0 genus 10 2 526 Sulfuricella 935200 species 1 0 649841 516 Sulfuricella denitrificans 1 0 5 family 24 Sterolibacteriaceae 1550 2008793 378210 705 Methyloversatilis genus 11 2 1 0 0 1 no rank 694 2639971 0 species 1 694 Methyloversatilis sp. RAC08 1842540 Sulfuritalea 821 1054211 0 1 2 19 genus 0 species 1 802 Sulfuritalea hydrogenivorans 748811 4207 Methylophilaceae 32011 1 0 family 24 14 2 genus 2 0 1 16 424 Methylophilus 0 1 no rank 422 2630143 species 1 0 1662285 422 Methylophilus sp. TWE2 359407 Methylotenera 1174 3 5 genus 0 1 0 species 1 743 Methylotenera versatilis 1055487 0 1 species Methylotenera mobilis 426 359408 722 Methylovorus 81682 0 1 19 genus 3 2634027 359 no rank 1 0 887061 359 Methylovorus sp. MP688 species 1 0 1 species 0 266009 Methylovorus glucosotrophus 344 2 genus 10 1 0 404 Methylobacillus 361 Methylobacillus flagellatus 351 405 0 1 species 1679002 1502 Candidatus Methylopumilus 6 genus 3 0 1 1014 Candidatus Methylopumilus planktonicus 1581557 0 species 1 1 species 0 1581680 Candidatus Methylopumilus turicensis 482 Nitrosomonadaceae 4808 206379 1 0 12 family 12 914 3711 Nitrosomonas 50 genus 7 0 1 species 1 0 916 548 Nitrosomonas eutropha 0 1 species Nitrosomonas communis 716 44574 44577 679 Nitrosomonas ureae species 1 0 species 1 0 915 413 Nitrosomonas europaea 0 2 no rank 1305 2609265 species 1 0 261292 612 Nitrosomonas sp. Is79A3 153948 Nitrosomonas sp. AL212 693 1 species 0 35798 Nitrosospira 1085 4 11 genus 0 1 0 1 species Nitrosospira multiformis 341 1231 403 Nitrosospira lacus 1288494 0 species 1 330 Nitrosospira briensis 35799 0 species 1 13 no rank 0 119066 6649 1301080 Candidatus Nasuia 243 2 genus 1 1 0 0 1 species Candidatus Nasuia deltocephalinicola 242 1160784 Candidatus Profftella 816 1381133 0 1 2 2 genus Candidatus Profftella armatura 814 669502 0 1 species 82 189384 0 1 genus 0 species 1 82 Candidatus Tremblaya princeps 189385 884 Candidatus Accumulibacter 327159 0 1 11 genus 2 1 species 0 327160 Candidatus Accumulibacter phosphatis 873 33055 4624 Kinetoplastibacterium genus 22 6 1 0 Kinetoplastibacterium blastocrithidii 750 233181 0 1 species 0 1 species Candidatus Kinetoplastibacterium crithidii 1075 33056 species 1 0 994695 716 Candidatus Kinetoplastibacterium galatii 994692 Candidatus Kinetoplastibacterium desouzaii 1204 1 species 0 857 Candidatus Kinetoplastibacterium oncopeltii 994696 0 species 1 1 0 6 class 1 Zetaproteobacteria 943 580370 Mariprofundales 942 580371 0 1 5 27 order 915 Mariprofundaceae 580372 1 0 family 6 4 Mariprofundus 909 377315 1 0 3 genus 11 1921086 Mariprofundus aestuarium 452 1 species 0 1 species 0 1921087 Mariprofundus ferrinatatus 446 0 subphylum 202 142419 68525 Epsilonproteobacteria 57384 29547 1 0 72 class 41 0 1 4 order 6 2704 Nautiliales 235899 224467 Nautiliaceae 2242 3 family 11 1 0 2231 Nautilia 191291 0 1 5 genus 2 0 species 1 2226 Nautilia profundicola 244787 2 family 0 2795691 458 269258 458 Nitratiruptor genus 1 2 1 0 no rank 1 0 2624044 457 0 1 species Nitratiruptor sp. SB155-2 457 387092 order 123 65 1 0 213849 54639 Campylobacterales 72293 Helicobacteraceae 8014 14 6 family 0 1 12 32 genus 0 1 209 Helicobacter 7733 748 Helicobacter cetorum 138563 0 species 1 0 species 1 386 Helicobacter cinaedi 213 210 3848 Helicobacter pylori species 1 0 522 Helicobacter hepaticus 32025 0 species 1 1 species 0 212 Helicobacter acinonychis 270 1591088 Helicobacter himalayensis 292 1 species 0 214 186 Helicobacter felis species 1 0 0 species 1 491 Helicobacter bilis 37372 1 no rank 0 2593540 311 222136 311 Helicobacter sp. MIT 01-6242 species 1 0 1 species 0 76936 Helicobacter typhlonius 377 species 1 0 217 270 Helicobacter mustelae 843 275 1 genus 0 species 1 0 844 275 Wolinella succinogenes 2771472 1651 family 5 0 1144 Sulfurovum 265570 0 1 15 genus 3 1 no rank 0 2646778 543 species 1 0 387093 543 Sulfurovum sp. NBC37-1 1 species 0 206403 Sulfurovum lithotrophicum 586 Nitratifractor 507 269260 1 0 2 genus 13 269261 494 Nitratifractor salsuginis species 1 0 42693 Campylobacteraceae 72294 1 0 family 69 41 9 68 genus 0 1 57665 Sulfurospirillum 3845 0 1 species Sulfurospirillum barnesii 451 44674 Sulfurospirillum deleyianum 459 65553 0 1 species 3 no rank 0 2618290 1730 0 species 1 549 Sulfurospirillum sp. SL2-1 1986224 0 species 1 553 Sulfurospirillum sp. JPD-1 220622 0 species 1 628 Sulfurospirillum sp. UCH001 1581011 287 Sulfurospirillum cavolei 366522 0 species 1 species 1 0 66821 412 Sulfurospirillum multivorans 0 species 1 438 Sulfurospirillum halorespirans 194424 194 27637 Campylobacter 228 genus 26 0 1 0 species 1 249 Campylobacter gracilis 824 1115 Campylobacter volucris 1031542 0 species 1 no rank 4 0 2593542 3373 0 species 1 1229 Campylobacter sp. RM16704 1500960 1 species 0 1660076 Campylobacter sp. RM12175 770 1 species 0 1660074 Campylobacter sp. RM8964 813 1660073 Campylobacter sp. RM6137 561 1 species 0 3117 Campylobacter lari 201 0 species 1 species 1 0 522485 611 Campylobacter avium 1 species 0 827 Campylobacter ureolyticus 1356 198 856 Campylobacter hyointestinalis species 1 0 1 species 0 488546 Campylobacter peloridis 1064 Campylobacter concisus 734 199 0 1 species Campylobacter coli 1882 195 0 1 species 1290 Campylobacter insulaenigrae 260714 0 species 1 1 species 0 374106 Campylobacter cuniculorum 878 1965231 1711 Campylobacter pinnipediorum species 1 0 1 species 0 28898 Campylobacter helveticus 542 Campylobacter hominis 652 76517 0 1 species 1 species 0 75658 Campylobacter lanienae 519 1 species 0 497724 Campylobacter subantarcticus 1112 206 1898 Campylobacter sputorum species 1 0 197 2411 Campylobacter jejuni species 1 0 0 1 species Campylobacter curvus 184 200 1 species 0 196 Campylobacter fetus 1146 species 1 0 1244531 709 Campylobacter iguaniorum 2321108 11142 5 no rank 0 2666 2321207 0 1 no rank 2666 Arcobacter sp. L 944547 0 species 1 0 genus 1 2607 2321187 Arcobacter sp. LPB0137 2607 1850254 0 1 species 5869 Arcobacter 28196 0 1 70 genus 3 species 1 0 28197 3532 Arcobacter butzleri Arcobacter nitrofigilis 2267 28199 0 1 species 0 4 family 2158 2771471 Sulfurimonas 1812 202746 0 1 3 7 genus 1 species 0 202747 Sulfurimonas autotrophica 892 1 species 0 39766 Sulfurimonas denitrificans 913 286130 346 genus 1 0 0 1 species Sulfuricurvum kujiense 346 148813 Deltaproteobacteria 85035 28221 0 1 130 120 class 0 1 58 order 20 11060 Desulfobacterales 213118 0 1 10 27 family Desulfobacteraceae 8051 213119 1060 Desulfobacterium 2295 0 1 6 genus 2 Desulfobacterium autotrophicum 1054 2296 0 1 species Desulfococcus 2670 896 0 1 3 27 genus 1350 Desulfococcus oleovorans 181663 0 species 1 Desulfococcus multivorans 1293 897 0 1 species 2117 Desulfatibacillum 218207 1 0 genus 11 2 0 species 1 2106 Desulfatibacillum alkenivorans 259354 28222 Desulfobacula 2177 2 2 genus 0 1 Desulfobacula toluolica 2175 28223 0 1 species 0 1 21 family 9 2951 Desulfobulbaceae 213121 0 1 2 5 genus Desulfotalea 822 109168 84980 817 Desulfotalea psychrophila species 1 0 893 Desulfobulbus 534 2 9 genus 0 1 0 species 1 525 Desulfobulbus sp. ORNL 1986146 genus 11 2 1 0 427922 692 Desulfurivibrio 681 Desulfurivibrio alkaliphilus 427923 0 species 1 0 1 2 12 genus Desulfocapsa 882 53318 species 1 0 65555 870 Desulfocapsa sulfexigens 1 0 6 order 3 Desulfurellales 1773 213113 0 1 5 7 family Desulfurellaceae 1770 117942 0 1 5 genus 2 560 Hippea 84404 0 1 species Hippea maritima 555 84405 1203 Desulfurella 33001 0 1 3 genus 2 Desulfurella acetivorans 1200 33002 0 1 species 2303 Syntrophobacterales 213462 0 1 17 order 11 213468 1477 Syntrophaceae 9 family 7 0 1 1 0 2 genus 7 Syntrophus 447 43773 440 Syntrophus aciditrophicus 316277 0 species 1 2357 554 Desulfomonile 5 genus 2 0 1 0 species 1 549 Desulfomonile tiedjei 2358 467 Desulfobacca 60892 0 1 4 genus 2 0 species 1 463 Desulfobacca acetoxidans 60893 5 family 3 0 1 213465 809 Syntrophobacteraceae 1 0 genus 13 2 804 Syntrophobacter 29526 791 Syntrophobacter fumaroxidans 119484 0 species 1 0 1 172 order 24 14029 Desulfuromonadales 69541 0 1 38 family 14 9205 Geobacteraceae 213422 1 0 genus 161 11 8425 Geobacter 28231 1 species 0 313985 Geobacter lovleyi 505 1340425 Geobacter anodireducens 637 1 species 0 1 species 0 28232 Geobacter metallireducens 894 Geobacter daltonii 596 1203471 0 1 species Geobacter uraniireducens 1301 351604 0 1 species 2001 2627627 0 no rank 2 Geobacter sp. M18 1197 443143 0 1 species 0 species 1 804 Geobacter sp. M21 443144 0 1 species Geobacter bemidjiensis 853 225194 35554 Geobacter sulfurreducens 696 1 species 0 Geobacter pickeringii 781 345632 0 1 species 2 10 genus 0 1 392332 Geoalkalibacter 742 0 species 1 732 Geoalkalibacter subterraneus 483547 213421 4652 Desulfuromonadaceae family 36 9 1 0 24 genus 3 0 1 890 2118 Desulfuromonas 1603606 Desulfuromonas soudanensis 1096 1 species 0 1 no rank 0 2614637 998 998 Desulfuromonas sp. DDH964 1823759 0 species 1 Pelobacter 2498 18 0 1 5 36 genus 0 1 species Pelobacter propionicus 683 29543 0 no rank 1 564 2620299 species 1 0 1842532 564 Pelobacter sp. SFB93 19 604 Pelobacter carbinolicus species 1 0 Pelobacter acetylenicus 611 29542 0 1 species Myxococcales 43436 29 0 1 38 365 order 0 suborder 26 25236 80811 39 Archangiaceae 7399 9 124 family 0 1 1324 Stigmatella 40 0 1 13 genus 2 species 1 0 41 1311 Stigmatella aurantiaca 42 Cystobacter 1834 2 10 genus 0 1 43 Cystobacter fuscus 1824 1 species 0 genus 5 2 1 0 44 1503 Melittangium 83453 1498 Melittangium boletus species 1 0 0 1 9 genus 2 2614 Archangium 47 species 1 0 48 2605 Archangium gephyra 1524213 Vulgatibacteraceae 1235 3 3 family 0 1 2 genus 14 1 0 1524214 Vulgatibacter 1232 Vulgatibacter incomptus 1218 1391653 0 1 species 1 0 family 20 5 5701 Anaeromyxobacteraceae 1524215 0 1 79 genus 4 5681 Anaeromyxobacter 161492 2620896 3062 2 no rank 0 species 1 0 447217 1506 Anaeromyxobacter sp. K 404589 Anaeromyxobacter sp. Fw109-5 1556 1 species 0 2540 Anaeromyxobacter dehalogenans 161493 0 species 1 9 family 51 1 0 31 Myxococcaceae 10901 5 259 genus 0 1 32 Myxococcus 7679 Myxococcus xanthus 1225 34 0 1 species 1486 Myxococcus stipitatus 83455 0 species 1 1297742 1553 Myxococcus hansupus species 1 0 0 species 1 3156 Myxococcus fulvus 33 83461 3171 Corallococcus genus 51 3 1 0 1 species 0 184914 Corallococcus coralloides 1672 0 species 1 1448 Myxococcus macrosporus 35 0 suborder 8 14300 80812 1 0 family 8 3 3468 Sandaracinaceae 1055686 genus 28 2 1 0 1055688 3460 Sandaracinus 1 species 0 927083 Sandaracinus amylolyticus 3432 0 1 40 family 5 10832 Polyangiaceae 49 50 2146 Chondromyces 6 genus 2 0 1 52 2140 Chondromyces crocatus species 1 0 8646 Sorangium 39643 1 0 genus 31 2 8615 Sorangium cellulosum 56 0 species 1 224462 3535 suborder 3 0 0 1 26 family 3 3535 Kofleriaceae 224464 3509 Haliangium 162027 0 1 18 genus 2 0 species 1 3491 Haliangium ochraceum 80816 Desulfarculales 1045 453227 1 0 4 order 9 3 family 6 1 0 453228 Desulfarculaceae 1036 Desulfarculus 1030 453229 0 1 2 9 genus 0 1 species Desulfarculus baarsii 1021 453230 Desulfovibrionales 11269 213115 0 1 26 129 order family 2 3 1 0 213117 455 Desulfohalobiaceae 45662 453 Desulfohalobium 5 genus 2 0 1 Desulfohalobium retbaense 448 45663 0 1 species 0 1 4 5 family Desulfomicrobiaceae 1123 213116 Desulfomicrobium 1118 898 0 1 3 12 genus 636 Desulfomicrobium baculatum 899 0 species 1 0 species 1 470 Desulfomicrobium orale 132132 9562 Desulfovibrionaceae 194924 0 1 64 family 18 2794998 559 genus 1 0 880 Desulfovibrio salexigens 559 1 species 0 2035811 Pseudodesulfovibrio 1936 4 genus 13 1 0 0 1 species Pseudodesulfovibrio indicus 802 1716143 57320 416 Pseudodesulfovibrio profundus species 1 0 0 species 1 705 Pseudodesulfovibrio aespoeensis 182210 0 1 2 3 genus Lawsonia 969 41707 0 species 1 966 Lawsonia intracellularis 29546 1 genus 0 2582840 620 1 species 0 873 Desulfovibrio africanus 620 Desulfovibrio 5414 872 1 0 9 genus 83 1141 Desulfovibrio desulfuricans 876 0 species 1 no rank 1 0 2593640 275 0 species 1 275 Desulfovibrio sp. G11 631220 species 1 0 1725232 122 Candidatus Desulfovibrio trichonymphae 58180 Desulfovibrio alaskensis 475 1 species 0 44742 Desulfovibrio fairfieldensis 438 1 species 0 0 species 1 1024 Desulfovibrio magneticus 184917 881 1430 Desulfovibrio vulgaris species 1 0 901 Desulfovibrio piger 426 1 species 0 640969 Gammaproteobacteria 1236 1 0 class 1127 911 order 460 252 1 0 91347 144539 Enterobacterales 25075 Yersiniaceae 1903411 1 0 family 62 39 1745211 384 Chania genus 5 2 1 0 379 Chania multitudinisentens 1639108 0 species 1 11838 Yersinia 629 0 1 147 genus 13 0 species 1 664 Yersinia ruckeri 29486 0 1 no rank 387 2653513 Yersinia sp. FDAARGOS_228 387 1839800 0 1 species 631 Yersinia intermedia 421 1 species 0 1 species 0 29483 Yersinia aldovae 464 0 species 1 413 Yersinia rohdei 29485 species 1 0 29484 1164 Yersinia frederiksenii 1 species 0 263819 Yersinia aleksiciae 320 1 species 0 630 Yersinia enterocolitica 1925 species 1 0 28152 422 Yersinia kristensenii species group 3 0 1649845 5511 0 1 species Yersinia pseudotuberculosis 1074 633 0 1 species Yersinia pestis 2592 632 0 species 1 1845 Yersinia similis 367190 genus 375 16 1 0 613 10942 Serratia Serratia fonticola 1045 47917 0 1 species 1 species 0 615 Serratia marcescens 2934 61651 521 Serratia ficaria species 1 0 3810 2647522 0 no rank 8 0 species 1 481 Serratia sp. MYb239 2033438 1 species 0 1327989 Serratia sp. FS14 516 1 species 0 488142 Serratia sp. SCBI 657 0 1 species Serratia sp. FGI94 550 671990 species 1 0 768490 350 Serratia sp. AS12 0 1 species Serratia sp. AS13 349 768493 104623 Serratia sp. ATCC 39006 461 1 species 0 Serratia sp. SSNIH1 446 1758196 0 1 species Serratia proteamaculans 338 28151 0 1 species 0 species 1 506 Serratia rubidaea 61652 0 species 1 897 Serratia plymuthica 82996 Serratia liquefaciens 516 614 0 1 species 929812 Gibbsiella 478 2 genus 5 1 0 473 Gibbsiella quercinecans 929813 0 species 1 Rahnella 1364 34037 1 0 4 genus 24 898 2635087 0 no rank 2 0 species 1 466 Rouxiella sp. ERMR1:05 1805933 0 species 1 432 Rahnella sp. Y9602 741091 1 species 0 34038 Rahnella aquatilis 442 1 genus 0 1565532 Rouxiella 7 no rank 2 0 451511 670 0 1 17 genus 2 670 Plesiomonas 702 703 Plesiomonas shigelloides 653 1 species 0 0 1 3 6 family Budviciaceae 402 1903416 genus 6 2 1 0 82984 396 Pragia 0 species 1 390 Pragia fontium 82985 20 35 family 0 1 1903410 Pectobacteriaceae 8752 71655 569 Brenneria 6 genus 2 0 1 563 Brenneria goodwinii 1109412 0 species 1 6 69 genus 0 1 204037 Dickeya 3034 1778540 Dickeya fangzhongdai 393 1 species 0 1 species 0 204038 Dickeya dadantii 422 Dickeya dianthicola 380 204039 0 1 species species 1 0 1089444 744 Dickeya solani 204042 Dickeya zeae 1026 1 species 0 5 genus 37 1 0 84565 Sodalis 1857 Sodalis praecaptivus 479 1239307 0 1 species 0 1 species Sodalis glossinidius 377 63612 1486991 455 Candidatus Sodalis pierantonius species 1 0 0 species 1 509 Sodalis endosymbiont of Henestaris halophilus 1929246 84 genus 6 0 1 122277 3257 Pectobacterium species 1 0 55208 389 Pectobacterium wasabiae 1905730 Pectobacterium parmentieri 765 1 species 0 29471 396 Pectobacterium atrosepticum species 1 0 1195 Pectobacterium carotovorum 554 0 species 1 Pectobacterium polaris 428 2042057 0 1 species family 463 123 1 0 543 64441 Enterobacteriaceae 561 Escherichia 8241 5 genus 37 1 0 208962 Escherichia albertii 630 1 species 0 0 1 species Escherichia fergusonii 231 564 562 Escherichia coli 7114 1 species 0 Escherichia marmotae 229 1499973 0 1 species 160674 Raoultella 1480 3 5 genus 0 1 54291 1045 Raoultella ornithinolytica species 1 0 430 Raoultella planticola 575 0 species 1 Salmonella 5696 590 0 1 3 6 genus 0 1 species Salmonella enterica 5159 28901 54736 Salmonella bongori 531 1 species 0 1048757 Candidatus Moranella 164 2 genus 1 1 0 1 species 0 1048758 Candidatus Moranella endobia 163 1113 Cedecea 158483 1 0 genus 4 2 158822 Cedecea neteri 1109 1 species 0 579 376 1 genus 0 61648 Kluyvera intermedia 376 1 species 0 1 genus 0 401618 641 1 species 0 401619 Candidatus Riesia pediculicola 641 570 Klebsiella 11252 10 genus 246 1 0 1134687 Klebsiella michiganensis 1022 1 species 0 2026240 395 Klebsiella quasivariicola species 1 0 0 1 species Klebsiella oxytoca 1607 571 2608929 737 2 no rank 0 species 1 0 1934254 338 Klebsiella sp. M5al 399 Klebsiella sp. LTGPAF-6F 1905288 0 species 1 species 1 0 1463165 476 Klebsiella quasipneumoniae 1734 Klebsiella aerogenes 548 0 species 1 244366 Klebsiella variicola 836 1 species 0 1 species 0 573 Klebsiella pneumoniae 4199 620 Shigella 527 4 genus 11 1 0 623 Shigella flexneri 132 1 species 0 622 257 Shigella dysenteriae species 1 0 no rank 1 0 2629414 127 species 1 0 1813821 127 Shigella sp. PAMC 28760 1 0 4 genus 10 Lelliottia 1199 1330545 species 1 0 1907578 316 Lelliottia jeotgali 0 1 species Lelliottia nimipressuralis 279 69220 0 1 species Lelliottia amnigena 594 61646 0 1 2 1 genus Shimwellia 352 1335483 1 species 0 563 Shimwellia blattae 351 1 0 3 genus 11 Pluralibacter 1148 1330546 species 1 0 61647 729 Pluralibacter gergoviae 1334193 408 [Enterobacter] lignolyticus species 1 0 2390 36866 0 5 no rank 1920109 Enterobacteriaceae bacterium ENNIH2 317 1 species 0 Enterobacteriaceae bacterium ENNIH1 287 2066051 0 1 species 1920128 Enterobacteriaceae bacterium ENNIH3 293 1 species 0 0 species 1 334 Enterobacteriaceae bacterium strain FGI 57 693444 0 species 1 1159 Plautia stali symbiont 891974 0 1 3 genus 2 865 Candidatus Ishikawaella 409304 0 1 species Candidatus Ishikawaella capsulata 862 168169 genus 23 4 1 0 83654 1075 Leclercia 353 Leclercia adecarboxylata 83655 0 species 1 2627398 699 no rank 2 0 0 1 species Leclercia sp. LSNIH1 322 1920114 1920116 Leclercia sp. LSNIH3 377 1 species 0 1330547 1668 Kosakonia genus 25 5 1 0 0 1 species Kosakonia radicincitans 488 283686 0 species 1 349 Kosakonia cowanii 208223 1 species 0 1158459 Kosakonia sacchari 378 0 1 species Kosakonia oryzae 428 497725 186 genus 14 0 1 544 6138 Citrobacter 67824 Citrobacter farmeri 516 1 species 0 0 species group 7 3372 1344959 2077148 212 Citrobacter freundii complex sp. CFNIH4 species 1 0 2066049 266 Citrobacter freundii complex sp. CFNIH2 species 1 0 Citrobacter werkmanii 574 67827 0 1 species 0 species 1 506 Citrobacter braakii 57706 Citrobacter freundii complex sp. CFNIH3 270 2077147 0 1 species 0 1 species Citrobacter freundii 1297 546 Citrobacter freundii complex sp. CFNIH9 247 2077149 0 1 species 67825 Citrobacter rodentium 354 1 species 0 1 species 0 545 Citrobacter koseri 371 0 1 species Citrobacter amalonaticus 771 35703 2 no rank 0 2644389 568 1920110 Citrobacter sp. CFNIH10 287 1 species 0 Citrobacter sp. FDAARGOS_156 281 1702170 0 1 species 22 no rank 0 191675 7897 7897 84563 0 clade 22 367 199891 0 1 clade 367 secondary endosymbiont of Trabutina mannipara 1835721 0 species 1 4030 84564 0 7 clade 4030 Candidatus Blochmannia 203804 0 1 40 genus 7 251542 547 Candidatus Blochmannia chromaiodes species 1 0 1 species 0 203907 Candidatus Blochmannia floridanus 689 0 species 1 528 Candidatus Blochmannia pennsylvanicus 101534 0 1 species Candidatus Blochmannia vafer 799 251535 711328 1427 no rank 2 0 738 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 0 species 1 1 species 0 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 689 1 0 2 genus 1 Candidatus Hoaglandella 217 1906659 0 1 species Candidatus Hoaglandella endobia 216 1778263 1906657 Candidatus Doolittlea 180 2 4 genus 0 1 176 Candidatus Doolittlea endobia 1778262 0 species 1 clade 4 0 146507 1222 1199245 218 secondary endosymbiont of Ctenarytaina eucalypti species 1 0 0 1 species secondary endosymbiont of Heteropsylla cubana 456 134287 568987 Candidatus Hamiltonella 548 2 6 genus 0 1 species 1 0 138072 542 Candidatus Hamiltonella defensa genus 2 2 1 0 1906661 412 Candidatus Gullanella 1 species 0 1070130 Candidatus Gullanella endobia 410 1906660 474 Candidatus Mikella 3 genus 2 0 1 1778264 Candidatus Mikella endobia 471 1 species 0 0 1 2 1 genus Candidatus Tachikawaea 995 1682492 0 1 species Candidatus Tachikawaea gelatinosa 994 1410383 Enterobacter 9055 547 0 1 22 391 genus species group 12 0 354276 6444 271 Enterobacter cancerogenus 69218 0 species 1 species 1 0 1812935 202 Enterobacter cloacae complex 'Hoffmann cluster IV' Enterobacter kobei 200 208224 0 1 species 2700 Enterobacter cloacae 550 0 species 1 Enterobacter ludwigii 228 299767 0 1 species 2757714 616 no rank 3 0 0 1 species Enterobacter cloacae complex sp. ECNIH7 221 1915310 species 1 0 2077137 218 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2027919 177 Enterobacter cloacae complex bacterium species 1 0 711 Enterobacter asburiae 61645 0 species 1 1 0 3 species 1058 Enterobacter hormaechei 1516 158836 1812934 259 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1 0 1296536 Enterobacter xiangfangensis 199 1 subspecies 0 9 no rank 0 2608935 2220 0 species 1 155 Enterobacter sp. Crenshaw 1977566 1 species 0 1827481 Enterobacter sp. ODB01 183 species 1 0 1166130 358 Enterobacter sp. R4-368 399742 Enterobacter sp. 638 266 1 species 0 species 1 0 1868135 154 Enterobacter sp. HK169 2051905 Enterobacter sp. CRENT-193 279 1 species 0 160 Enterobacter sp. E20 1560339 0 species 1 1 species 0 1914861 Enterobacter sp. SA187 343 1 species 0 1692238 Enterobacter sp. FY-07 322 1 0 genus 71 8 2701 Cronobacter 413496 1 species 0 413497 Cronobacter dublinensis 363 Cronobacter universalis 378 535744 0 1 species 334 Cronobacter muytjensii 413501 0 species 1 28141 576 Cronobacter sakazakii species 1 0 413502 333 Cronobacter turicensis species 1 0 1163710 Cronobacter condimenti 328 1 species 0 1 species 0 413503 Cronobacter malonaticus 318 family 44 22 1 0 1903414 11600 Morganellaceae 1 0 genus 11 2 675 Morganella 581 0 species 1 664 Morganella morganii 582 6 25 genus 0 1 626 Xenorhabdus 2742 species 1 0 628 514 Xenorhabdus nematophila species 1 0 40577 460 Xenorhabdus poinarii species 1 0 351679 492 Xenorhabdus hominickii 0 1 species Xenorhabdus bovienii 839 40576 species 1 0 351671 412 Xenorhabdus doucetiae 583 Proteus 2802 3 genus 13 1 0 1861 Proteus mirabilis 584 0 species 1 928 Proteus vulgaris 585 0 species 1 0 1 4 17 genus Providencia 2313 586 588 1086 Providencia stuartii species 1 0 Providencia rettgeri 752 587 0 1 species 458 Providencia alcalifaciens 126385 0 species 1 0 1 11 genus 2 1010 Arsenophonus 637 species 1 0 634113 999 Arsenophonus symbiont of Lipoptena fortisetosa 29487 Photorhabdus 2014 4 genus 18 1 0 29488 638 Photorhabdus luminescens species 1 0 species 1 0 574560 523 Photorhabdus temperata 1 species 0 291112 Photorhabdus asymbiotica 835 1903409 22147 Erwiniaceae family 38 28 1 0 0 1 2 26 genus Buchnera 10720 32199 0 species 1 10694 Buchnera aphidicola 9 Pantoea 5338 53335 0 1 11 162 genus 1278 2630326 0 no rank 3 0 1 species Pantoea sp. PSNIH1 343 1484158 592316 506 Pantoea sp. At-9b species 1 0 1 species 0 1484157 Pantoea sp. PSNIH2 429 1235990 745 Candidatus Pantoea carbekii species 1 0 1 species group 0 1654067 676 0 1 species Pantoea agglomerans 676 549 Pantoea ananatis 533 553 0 1 species 361 Pantoea alhagi 1891675 0 species 1 470934 Pantoea vagans 871 1 species 0 0 species 1 379 Pantoea stewartii 66269 0 species 1 333 Pantoea rwandensis 1076550 2100764 979 genus 2 0 0 1 species Pantoea calida 563 665913 1 species 0 665914 Pantoea gaviniae 416 0 1 2 5 genus Tatumella 350 82986 1 species 0 53336 Tatumella citrea 345 genus 17 2 1 0 51228 2022 Wigglesworthia 1 species 0 51229 Wigglesworthia glossinidia 2005 0 1 8 62 genus Erwinia 2700 551 Erwinia tasmaniensis 335 338565 0 1 species 552 Erwinia amylovora 344 1 species 0 0 1 species Candidatus Erwinia sp. ErCipseudotaxifoliae 422 1922217 0 species 1 436 Erwinia gerundensis 1619313 79967 Erwinia pyrifoliae 318 1 species 0 1 no rank 0 2622719 271 215689 271 Erwinia sp. Ejp617 species 1 0 0 species 1 512 Erwinia billingiae 182337 1903412 Hafniaceae 10992 14 32 family 0 1 1 0 8 genus 124 Edwardsiella 9294 635 1821960 572 Edwardsiella anguillarum species 1 0 6403 Edwardsiella tarda 636 0 species 1 347 Edwardsiella hoshinae 93378 0 species 1 438 Edwardsiella piscicida 1263550 0 species 1 1027 2676541 0 no rank 2 1 species 0 1650654 Edwardsiella sp. LADL05-105 539 1578828 Edwardsiella sp. EA181011 488 1 species 0 0 1 species Edwardsiella ictaluri 383 67780 Obesumbacterium 354 82982 1 0 2 genus 2 352 Obesumbacterium proteus 82983 0 species 1 0 1 3 25 genus Hafnia 1312 568 2621980 302 no rank 1 0 1848580 302 Hafnia sp. CBA7124 species 1 0 569 985 Hafnia alvei species 1 0 1775403 700 Nevskiales order 12 4 1 0 family 2 0 2689614 685 469322 685 Steroidobacter 23 genus 2 0 1 0 1 species Steroidobacter denitrificans 662 465721 568386 3 Sinobacteraceae family 1 0 1 0 30 order 32 Cellvibrionales 12570 1706369 1706375 2598 Spongiibacteraceae 39 family 7 0 1 630749 Spongiibacter 688 2 4 genus 0 1 2631504 684 no rank 1 0 Spongiibacter sp. IMCC21906 684 1620392 0 1 species 2 genus 5 1 0 1084558 Oceanicoccus 1127 0 1 species Oceanicoccus sagamiensis 1122 716816 744 Zhongshania 1434050 0 1 5 genus 2 0 species 1 739 Zhongshania aliphaticivorans 1470434 13 44 family 0 1 1706371 Cellvibrionaceae 5423 genus 5 2 1 0 2036021 1248 Agarilytica 1737490 1243 Agarilytica rhodophyticola species 1 0 1 0 genus 4 2 742 Teredinibacter 2425 species 1 0 2426 738 Teredinibacter turnerae 10 1878 Cellvibrio 16 genus 4 0 1 0 species 1 562 Cellvibrio japonicus 155077 no rank 2 0 2624793 1300 Cellvibrio sp. PSBB023 619 1945512 0 1 species Cellvibrio sp. PSBB006 681 1987723 0 1 species 698 Simiduia 447467 0 1 3 genus 2 447471 695 Simiduia agarivorans species 1 0 0 1 2 8 genus Saccharophagus 813 316625 86304 805 Saccharophagus degradans species 1 0 1 0 family 10 5 2391 Microbulbiferaceae 1706373 4 genus 50 1 0 48073 Microbulbifer 2381 1 species 0 260552 Microbulbifer agarilyticus 755 252514 770 Microbulbifer thermotolerans species 1 0 1769779 806 Microbulbifer aggregans species 1 0 1706372 2126 Halieaceae 15 family 4 0 1 3 36 genus 0 1 1217416 Halioglobus 2111 Halioglobus japonicus 1111 930805 0 1 species 930806 Halioglobus pacificus 964 1 species 0 129 order 407 1 0 72274 Pseudomonadales 122489 Pseudomonadaceae 87664 135621 0 1 86 459 family 1849530 709 Oblitimonas genus 2 2 1 0 1697053 707 Oblitimonas alkaliphila species 1 0 Pseudomonas 83971 286 0 1 80 2624 genus 930166 Pseudomonas brassicacearum 1040 1 species 0 198620 Pseudomonas koreensis 1001 1 species 0 312306 549 Pseudomonas entomophila species 1 0 0 1 species Pseudomonas lurida 434 244566 498 Pseudomonas cremoricolorata 157783 0 species 1 65741 900 Pseudomonas knackmussii species 1 0 16511 196821 0 no rank 30 species 1 0 1294143 780 Pseudomonas sp. ATCC 13867 2083054 Pseudomonas sp. LG1D9 455 1 species 0 species 1 0 1207075 447 Pseudomonas sp. UW4 species 1 0 1636610 538 Pseudomonas sp. PONIH3 0 species 1 609 Pseudomonas sp. NC02 2067572 0 1 species Pseudomonas sp. VLB120 405 69328 species 1 0 2069256 434 Pseudomonas sp. XWY-1 0 species 1 456 Pseudomonas sp. HLS-6 2049589 1611770 Pseudomonas sp. MRSN12121 632 1 species 0 1 species 0 1930532 Pseudomonas sp. CC6-YY-74 948 424 Pseudomonas sp. FGI182 1259844 0 species 1 0 1 species Pseudomonas sp. SWI36 468 2083052 0 1 species Pseudomonas sp. LPH1 687 1898684 Pseudomonas sp. TKP 744 1415630 0 1 species 0 1 species Pseudomonas sp. StFLB209 540 1028989 0 species 1 498 Pseudomonas sp. DR 5-09 1534110 0 species 1 425 Pseudomonas sp. SWI44 2083053 517 Pseudomonas sp. GR 6-02 1659194 0 species 1 species 1 0 1931241 598 Pseudomonas sp. S-6-2 1 species 0 1283291 Pseudomonas sp. URMO17WK12:I11 884 1649877 595 Pseudomonas sp. CCOS 191 species 1 0 1500686 555 Pseudomonas sp. Os17 species 1 0 0 species 1 487 Pseudomonas sp. M30-35 1981174 2083055 512 Pseudomonas sp. LH1G9 species 1 0 428 Pseudomonas sp. JY-Q 1338689 0 species 1 2018067 413 Pseudomonas sp. FDAARGOS_380 species 1 0 1 species 0 1827300 Pseudomonas sp. MYb193 346 species 1 0 1856685 706 Pseudomonas sp. TCU-HL1 1 species 0 2083051 Pseudomonas sp. SWI6 419 species 1 0 1500687 561 Pseudomonas sp. St29 species group 9 0 136843 13166 6865 Pseudomonas fluorescens 294 0 species 1 47878 Pseudomonas azotoformans 1143 1 species 0 76758 Pseudomonas orientalis 417 1 species 0 0 1 species Pseudomonas corrugata 521 47879 0 1 species Pseudomonas mandelii 528 75612 380021 Pseudomonas protegens 886 1 species 0 0 1 species Pseudomonas trivialis 1907 200450 Pseudomonas poae 408 200451 0 1 species 1 species 0 76761 Pseudomonas veronii 491 216142 Pseudomonas rhizosphaerae 550 1 species 0 136842 3991 2 species group 0 1 species 0 296 Pseudomonas fragi 820 1 species 0 587753 Pseudomonas chlororaphis 3171 237609 499 Pseudomonas alkylphenolica species 1 0 219572 367 Pseudomonas antarctica species 1 0 237610 Pseudomonas psychrotolerans 738 1 species 0 11446 136841 0 species group 6 53412 863 Pseudomonas resinovorans species 1 0 1232139 1074 species subgroup 1 0 0 1 species Pseudomonas furukawaii 1074 1149133 0 1 species Pseudomonas aeruginosa 4527 287 Pseudomonas alcaligenes 823 43263 0 1 species 1 species 0 53408 Pseudomonas citronellolis 1456 300 Pseudomonas mendocina 2703 1 species 0 species 1 0 1853130 775 Pseudomonas silesiensis 5688 136846 0 species group 2 4954 578833 0 1 species subgroup 316 Pseudomonas stutzeri 4954 1 species 0 1 species 0 74829 Pseudomonas balearica 734 136845 11639 6 species group 0 species 1 0 47880 1007 Pseudomonas fulva 0 1 species Pseudomonas monteilii 1503 76759 1 species 0 47885 Pseudomonas oryzihabitans 689 0 species 1 1393 Pseudomonas mosselii 78327 1 species 0 303 Pseudomonas putida 6538 0 1 species Pseudomonas plecoglossicida 509 70775 104087 Pseudomonas frederiksbergensis 1354 1 species 0 652 Pseudomonas alcaliphila 101564 0 species 1 157782 Pseudomonas parafulva 951 1 species 0 8 species group 0 136849 7565 species 1 0 36746 482 Pseudomonas cichorii 251701 1074 Pseudomonas syringae group genomosp. 3 species 1 0 species subgroup 1 0 251695 3424 3424 Pseudomonas syringae 317 0 species 1 Pseudomonas avellanae 506 46257 0 1 species 1 species 0 33069 Pseudomonas viridiflava 463 0 species subgroup 2 1224 251698 0 species 1 648 Pseudomonas savastanoi 29438 576 Pseudomonas amygdali 47877 0 species 1 no rank 1 0 2775504 392 species 1 0 1206777 392 Pseudomonas sp. Lz4W Pseudomonas versuta 408 1788301 0 1 species 1 species 0 1583341 Pseudomonas cerasi 625 2525 351 0 3 subfamily 1 0 genus 26 3 2525 Azotobacter 352 353 1551 Azotobacter chroococcum species 1 0 Azotobacter vinelandii 948 354 0 1 species Moraxellaceae 34418 468 1 0 42 family 89 475 3081 Moraxella genus 34 5 1 0 34062 Moraxella osloensis 1215 1 species 0 0 1 species Moraxella catarrhalis 817 480 species 1 0 29433 362 Moraxella ovis Moraxella bovoculi 653 386891 0 1 species genus 131 11 1 0 497 5850 Psychrobacter 3357 196806 0 no rank 6 1720344 501 Psychrobacter sp. AntiMn-1 species 1 0 1 species 0 349106 Psychrobacter sp. PRwf-1 722 612 Psychrobacter sp. DAB_AL43B 1028416 0 species 1 0 species 1 568 Psychrobacter sp. P2G3 1699622 Psychrobacter sp. P11G5 506 1699624 0 1 species Psychrobacter sp. G 448 571800 0 1 species 508 Psychrobacter cryohalolentis 330922 0 species 1 507 Psychrobacter arcticus 334543 0 species 1 0 species 1 586 Psychrobacter urativorans 45610 1 species 0 261164 Psychrobacter alimentarius 761 25398 Acinetobacter 469 1 0 genus 278 25 0 species 1 818 Acinetobacter oleivorans 1148157 413 Acinetobacter indicus 756892 0 species 1 1 species 0 202950 707 707 Acinetobacter sp. ADP1 62977 0 strain 1 0 species 1 1148 Acinetobacter junii 40215 0 species 1 631 Acinetobacter larvae 1789224 4595 196816 0 no rank 7 Acinetobacter sp. SWBY1 624 2079596 0 1 species Acinetobacter sp. NCu2D-2 518 1608473 0 1 species 0 1 species Acinetobacter sp. TGL-Y2 664 1407071 0 species 1 724 Acinetobacter sp. ACNIH2 1758189 species 1 0 1636603 833 Acinetobacter sp. ACNIH1 species 1 0 1808001 490 Acinetobacter sp. LoGeW2-3 1646498 742 Acinetobacter sp. TTH0-4 species 1 0 909768 11184 5 species group 0 1 species 0 1785128 Acinetobacter lactucae 885 0 1 species Acinetobacter baumannii 3837 470 48296 Acinetobacter pittii 3636 1 species 0 471 1628 Acinetobacter calcoaceticus species 1 0 106654 Acinetobacter nosocomialis 1198 1 species 0 species 1 0 108981 654 Acinetobacter schindleri 0 species 1 528 Acinetobacter johnsonii 40214 0 1 species Acinetobacter radioresistens 663 40216 0 1 species Acinetobacter equi 1334 1324350 1 species 0 487316 Acinetobacter soli 580 0 species 1 940 Acinetobacter bereziniae 106648 1 species 0 29430 Acinetobacter haemolyticus 925 72273 31070 Thiotrichales 35 order 36 0 1 1 0 15 family 50 Piscirickettsiaceae 7840 135616 1 0 genus 2 2 629 Hydrogenovibrio 28884 39765 627 Hydrogenovibrio crunogenus species 1 0 40222 Methylophaga 1409 3 21 genus 0 1 0 species 1 753 Methylophaga nitratireducenticrescens 754476 1 species 0 754477 Methylophaga frappieri 635 2 genus 7 1 0 1237 Piscirickettsia 1437 1238 1430 Piscirickettsia salmonis species 1 0 1035 Thiomicrospira 933 0 1 5 genus 3 536 Thiomicrospira aerophila 92245 0 species 1 species 1 0 147268 494 Thiomicrospira cyclica 1 0 4 genus 49 Cycloclasticus 3280 34067 2091 2621467 0 no rank 2 species 1 0 385025 1062 Cycloclasticus sp. P1 728003 Cycloclasticus sp. PY97N 1029 1 species 0 1140 Cycloclasticus zancles 1329899 0 species 1 15 family 31 1 0 34064 Francisellaceae 20820 1 0 12 genus 240 Francisella 19617 262 0 species 1 1865 Francisella noatunensis 657445 species 1 0 954 978 Francisella persica 0 species 1 1542 Francisella sp. TX077310 573570 0 species 1 1204 Francisella hispaniensis 622488 Francisella philomiragia 2794 28110 0 1 species no rank 2 0 2610885 2343 1270 Francisella sp. FSC1006 1547445 0 species 1 1073 Francisella sp. MA067296 475375 0 species 1 1 species 0 263 Francisella tularensis 3700 1020 Francisella sp. TX077308 573569 0 species 1 Francisella sp. CA97-1460 1409 1542390 0 1 species 0 1 species Francisella halioticida 2522 549298 Allofrancisella 1172 1869285 1 0 2 genus 2 0 species 1 1170 Allofrancisella guangzhouensis 594679 135617 Thiotrichaceae 2375 5 family 35 1 0 2 genus 6 1 0 1021 Beggiatoa 1139 288004 1133 Beggiatoa leptomitoformis species 1 0 1 0 genus 7 2 1201 Thioploca 40751 1194 Thioploca ingrica 40754 0 species 1 2 order 4 0 1 135615 410 Cardiobacteriales 868 Cardiobacteriaceae 408 3 15 family 0 1 1 0 2 genus 7 Dichelobacter 393 869 species 1 0 870 386 Dichelobacter nodosus 135613 Chromatiales 26535 52 248 order 0 1 72276 Ectothiorhodospiraceae 9165 18 115 family 0 1 801 Acidihalobacter 1765964 1 0 genus 5 2 0 1 species Acidihalobacter prosperus 796 160660 133193 Alkalilimnicola 853 2 genus 17 1 0 1 species 0 351052 Alkalilimnicola ehrlichii 836 genus 110 6 1 0 106633 4729 Thioalkalivibrio 770 Thioalkalivibrio versutus 106634 0 species 1 0 species 1 924 Thioalkalivibrio paradoxus 108010 1 species 0 186931 Thioalkalivibrio nitratireducens 851 1 species 0 1033854 Thioalkalivibrio sulfidiphilus 1313 2621013 761 1 no rank 0 0 species 1 761 Thioalkalivibrio sp. K90mix 396595 3 genus 17 1 0 1335745 Spiribacter 1076 0 species 1 593 Spiribacter curvatus 1335757 0 1 species Spiribacter salinus 466 1335746 0 1 18 genus 2 825 Ectothiorhodospira 1051 807 2684909 0 no rank 1 1442136 807 Ectothiorhodospira sp. BSL-9 species 1 0 85108 766 Halorhodospira 14 genus 2 0 1 0 species 1 752 Halorhodospira halophila 1053 1353 451214 0 no rank 2 Thiohalobacter 1353 1273155 0 1 2 22 genus 0 1 species Thiohalobacter thiocyanaticus 1331 585455 1738654 1571 Woeseiaceae 3 family 3 0 1 1568 Woeseia 1738655 1 0 genus 11 2 1 species 0 1548547 Woeseia oceani 1557 1 0 family 12 3 1047 Granulosicoccaceae 449719 1035 Granulosicoccus 437504 0 1 14 genus 2 Granulosicoccus antarcticus 1021 437505 0 1 species 255526 Halothiobacillaceae 1015 4 family 8 1 0 24 genus 3 0 1 109262 1007 Halothiobacillus 1 species 0 927 Halothiobacillus neapolitanus 482 501 2636392 0 no rank 1 1 species 0 1860122 Halothiobacillus sp. LS2 501 18 108 family 0 1 1046 Chromatiaceae 10976 genus 15 2 1 0 156885 1195 Thioflavicoccus 1180 Thioflavicoccus mobilis 80679 0 species 1 1075 82569 0 no rank 1 1978339 1075 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1 0 1005 Allochromatium 85072 1 0 genus 9 2 1 species 0 1049 Allochromatium vinosum 996 1227 2013 Nitrosococcus genus 26 4 1 0 133539 479 Nitrosococcus halophilus species 1 0 0 species 1 564 Nitrosococcus oceani 1229 0 species 1 944 Nitrosococcus watsonii 473531 Thiodictyon 2488 53392 0 1 2 20 genus 0 species 1 2468 Candidatus Thiodictyon syntrophicum 1166950 1980513 Candidatus Nitrosoglobus 698 2 6 genus 0 1 1630141 Candidatus Nitrosoglobus terrae 692 1 species 0 959 Thiocystis 13724 1 0 genus 6 2 species 1 0 73141 953 Thiocystis violascens 2 15 genus 0 1 85076 Marichromatium 1435 37487 1420 Marichromatium purpuratum species 1 0 1160 Wenzhouxiangellaceae 1676141 0 1 7 family 3 1676142 Wenzhouxiangella 1153 2 24 genus 0 1 1579979 1129 Wenzhouxiangella marina species 1 0 0 no rank 2 1617 33811 0 species 1 652 gamma proteobacterium HdN1 83406 1248727 endosymbiont of unidentified scaly snail isolate Monju 965 1 species 0 0 1 13 22 order Methylococcales 5452 135618 12 51 family 0 1 403 Methylococcaceae 5430 0 1 5 genus 2 566 Methylovulum 762296 1704499 561 Methylovulum psychrotolerans species 1 0 2 11 genus 0 1 413 Methylococcus 644 1 species 0 414 Methylococcus capsulatus 633 416 Methylomonas 3163 5 64 genus 0 1 2608980 758 no rank 1 0 1727196 758 Methylomonas sp. DH-1 species 1 0 species 1 0 702114 727 Methylomonas koyamae Methylomonas denitrificans 966 1538553 0 1 species 421 648 Methylomonas methanica species 1 0 39773 Methylomicrobium 1006 2 7 genus 0 1 999 Methylomicrobium alcaliphilum 271065 0 species 1 0 1 6 15 order Acidiferrobacterales 2193 1692040 0 1 28 family 5 2178 Acidiferrobacteraceae 1692041 genus 20 2 1 0 1692042 1328 Sulfurifustis Sulfurifustis variabilis 1308 1675686 0 1 species 1744881 822 Sulfuricaulis genus 14 2 1 0 1 species 0 1620215 Sulfuricaulis limicola 808 15920 Pasteurellales 135625 0 1 5 order 33 Pasteurellaceae 15915 712 0 1 32 92 family 576 Gallibacterium 155493 1 0 genus 6 2 species 1 0 750 570 Gallibacterium anatis 697331 298 Basfia genus 2 2 1 0 157673 [Mannheimia] succiniciproducens 296 1 species 0 476528 738 Bibersteinia 1 genus 2 0 1 species 1 0 47735 737 Bibersteinia trehalosi 724 Haemophilus 5331 6 genus 27 1 0 471 2609962 0 1 no rank species 1 0 712310 471 Haemophilus sp. oral taxon 036 0 species 1 399 Haemophilus pittmaniae 249188 2889 Haemophilus influenzae 727 0 species 1 729 499 Haemophilus parainfluenzae species 1 0 730 [Haemophilus] ducreyi 1046 1 species 0 1618 Actinobacillus 713 1 0 genus 19 5 0 species 1 449 Actinobacillus equuli 718 715 501 Actinobacillus pleuropneumoniae species 1 0 67854 284 Actinobacillus succinogenes species 1 0 1 species 0 716 Actinobacillus suis 365 4 genus 20 1 0 75984 Mannheimia 1720 596 Mannheimia haemolytica 75985 0 species 1 85404 633 Mannheimia varigena species 1 0 0 no rank 1 471 2645054 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 471 1 species 0 6 genus 3 0 1 416916 1115 Aggregatibacter 732 507 Aggregatibacter aphrophilus species 1 0 714 602 Aggregatibacter actinomycetemcomitans species 1 0 Pasteurella 2766 745 1 0 3 genus 21 species 1 0 747 2085 Pasteurella multocida Pasteurella dagmatis 660 754 0 1 species 0 1 2 5 genus Histophilus 798 214906 793 Histophilus somni 731 0 species 1 2094023 Glaesserella 863 2 genus 3 1 0 860 Glaesserella parasuis 738 0 species 1 1240482 Orbales 2399 6 2 order 0 1 1240483 2397 Orbaceae family 14 5 1 0 1335631 Frischella 1052 2 genus 12 1 0 1 species 0 1267021 Frischella perrara 1040 1193503 1331 Gilliamella 10 genus 2 0 1 1196095 Gilliamella apicola 1321 1 species 0 0 1 72 139 order Oceanospirillales 32939 135619 125 family 32 0 1 28256 15900 Halomonadaceae 204286 Cobetia 806 2 genus 16 1 0 1 species 0 28258 Cobetia marina 790 0 1 7 genus 2 771 Halotalea 376488 0 species 1 764 Halotalea alkalilenta 376489 15 205 genus 0 1 2745 Halomonas 9485 0 1 species Halomonas aestuarii 1003 1897729 1178482 666 Halomonas huangheensis species 1 0 1 species 0 507626 Halomonas chromatireducens 682 508 Halomonas campaniensis 213554 0 species 1 0 1 species Halomonas beimenensis 1238 475662 2609666 4706 8 no rank 0 Halomonas sp. GFAJ-1 411 1118153 0 1 species 1610576 525 Halomonas sp. R57-5 species 1 0 0 1 species Halomonas sp. SF2003 788 2136172 1949203 Halomonas sp. 'Soap Lake #6' 496 1 species 0 0 1 species Halomonas sp. 1513 912 1883416 0 species 1 544 Halomonas sp. KO116 1504981 1971364 533 Halomonas sp. GT species 1 0 1962264 497 Halomonas sp. 'Soap Lake #7' species 1 0 0 1 species Halomonas hydrothermalis 477 115561 881 Salinicola 404432 1 0 genus 7 2 1771309 Salinicola tamaricis 874 1 species 0 11 genus 2 0 1 42054 772 Chromohalobacter 158080 Chromohalobacter salexigens 761 1 species 0 5 no rank 0 114403 1901 2 1 genus 0 1 1495768 Candidatus Evansia 668 species 1 0 1495769 667 Candidatus Evansia muelleri 355 114185 0 1 genus Candidatus Carsonella ruddii 355 114186 0 1 species Candidatus Portiera 878 235572 1 0 2 genus 6 0 1 species Candidatus Portiera aleyrodidarum 872 91844 1159 Kushneria 504090 0 1 27 genus 3 species 1 0 698828 613 Kushneria konosiri species 1 0 157779 519 Kushneria marisflavi family 39 13 1 0 135620 6144 Oceanospirillaceae 900 Bacterioplanes 1537406 1 0 genus 6 2 0 species 1 894 Bacterioplanes sanyensis 1249553 genus 21 4 1 0 28253 2452 Marinomonas 1 species 0 119864 Marinomonas mediterranea 776 936476 Marinomonas posidonica 644 1 species 0 0 no rank 1 1011 196814 1 species 0 400668 Marinomonas sp. MWYL1 1011 1 0 2 genus 4 Thalassolituus 880 187492 Thalassolituus oleivorans 876 187493 0 1 species genus 11 2 1 0 48075 1037 Marinobacterium Marinobacterium aestuarii 1026 1821621 0 1 species 2 genus 7 1 0 188907 Oleispira 836 188908 829 Oleispira antarctica species 1 0 38 family 9 0 1 224372 4676 Alcanivoracaceae 10 genus 2 0 1 2025617 783 Ketobacter 1 species 0 1917421 Ketobacter alkanivorans 773 59753 3855 Alcanivorax genus 113 6 1 0 2638842 499 1 no rank 0 1 species 0 1113728 Alcanivorax sp. NBRC 101098 499 0 1 species Alcanivorax pacificus 892 1306787 0 species 1 908 Alcanivorax xenomutans 1094342 915 Alcanivorax dieselolei 285091 0 species 1 0 1 species Alcanivorax borkumensis 528 59754 Oleiphilaceae 978 191033 1 0 3 family 23 141450 Oleiphilus 955 2 6 genus 0 1 Oleiphilus messinensis 949 141451 0 1 species 1 0 family 3 5 1580 Saccharospirillaceae 255527 230494 684 Reinekea genus 8 2 1 0 species 1 0 1336806 676 Reinekea forsetii 1 0 genus 10 2 893 Gynuella 1445504 0 1 species Gynuella sunshinyii 883 1445505 0 1 11 family 6 2644 Kangiellaceae 1920240 2633 Kangiella 261963 1 0 genus 38 5 0 1 species Kangiella profundi 676 1561924 639 Kangiella sediminilitoris 1144748 0 species 1 1 species 0 261964 Kangiella koreensis 667 0 1 species Kangiella geojedonensis 613 914150 878 Hahellaceae 224379 1 0 family 1 3 0 1 4 genus 2 877 Hahella 158481 Hahella chejuensis 873 158327 0 1 species 0 1 21 15 order Legionellales 17312 118969 5 family 33 1 0 118968 Coxiellaceae 2302 Coxiella 1592 776 1 0 3 genus 27 661 2676648 0 1 no rank Coxiella endosymbiont of Amblyomma americanum 661 325775 0 1 species 0 species 1 904 Coxiella burnetii 777 677 134284 0 1 no rank 1592897 677 Coxiella-like endosymbiont species 1 0 family 45 15 1 0 444 14995 Legionellaceae 2 genus 14 1 0 465 Tatlockia 858 Tatlockia micdadei 844 451 0 1 species 445 14092 Legionella 100 genus 12 0 1 28087 Legionella sainthelensi 1264 1 species 0 775 Legionella oakridgensis 29423 0 species 1 species 1 0 450 1266 Legionella longbeachae 0 species 1 4060 Legionella pneumophila 446 452 Legionella spiritensis 580 1 species 0 0 1 species Legionella endosymbiont of Polyplax serrata 1265 2005262 945 Legionella waltersii 66969 0 species 1 1 species 0 1867846 Legionella clemsonensis 956 0 1 species Legionella lansingensis 807 45067 1168 Legionella fallonii 96230 0 species 1 species 1 0 449 906 Legionella hackeliae order 81 28 1 0 135624 15007 Aeromonadales 0 1 27 134 family Aeromonadaceae 14926 84642 18 593 genus 0 1 642 Aeromonas 11870 648 295 Aeromonas caviae species 1 0 0 1 species Aeromonas schubertii 486 652 species 1 0 644 2496 Aeromonas hydrophila Aeromonas dhakensis 414 196024 0 1 species 1423 Aeromonas salmonicida 645 0 species 1 1 species 0 651 Aeromonas media 492 0 species 1 474 Aeromonas rivipollensis 948519 654 1247 Aeromonas veronii species 1 0 8 no rank 0 257493 3409 0 species 1 526 Aeromonas sp. CA23 2033032 2033033 Aeromonas sp. CU5 409 1 species 0 Aeromonas sp. ASNIH3 328 1636608 0 1 species 0 1 species Aeromonas sp. ASNIH5 455 1758179 1 species 0 1636609 Aeromonas sp. ASNIH4 540 529 Aeromonas sp. ASNIH1 1636606 0 species 1 1 species 0 1636607 Aeromonas sp. ASNIH2 312 Aeromonas sp. ASNIH7 310 1920107 0 1 species 541 Aeromonas aquatica 558964 0 species 1 0 1 genus 392 43947 1 species 0 43948 Tolumonas auensis 392 Zobellella 838 347533 0 1 2 13 genus Zobellella denitrificans 825 347534 0 1 species 1 0 genus 9 3 1015 Oceanisphaera 225143 1416627 Oceanisphaera profunda 537 1 species 0 469 Oceanisphaera sp. AMac2203 1903694 0 species 1 677 Oceanimonas 129577 0 1 7 genus 2 2636315 670 1 no rank 0 1 species 0 511062 Oceanimonas sp. GK1 670 Vibrionales 52269 135623 1 0 44 order 46 Vibrionaceae 52223 641 0 1 43 173 family Photobacterium 9997 657 0 1 4 10 genus 0 1 species Photobacterium damselae 8447 38293 74109 Photobacterium profundum 1019 1 species 0 0 species 1 521 Photobacterium gaetbulicola 1295392 246861 509 Grimontia 2 genus 2 0 1 Grimontia hollisae 507 673 0 1 species 2042066 Paraphotobacterium 4269 2 6 genus 0 1 4263 Paraphotobacterium marinum 1755811 0 species 1 413 genus 30 0 1 662 33997 Vibrio 672 Vibrio vulnificus 2409 1 species 0 1534743 Vibrio hyugaensis 628 1 species 0 0 species 1 697 Vibrio fluvialis 676 Vibrio breoganii 564 553239 0 1 species 0 1 species Vibrio cholerae 1012 666 species 1 0 190893 1980 Vibrio coralliilyticus 0 1 species Vibrio scophthalmi 1845 45658 0 species group 10 15236 717610 0 species 1 4269 Vibrio campbellii 680 1 species 0 696485 Vibrio owensii 1005 Vibrio natriegens 1060 691 0 1 species 0 1 species Vibrio alginolyticus 2102 663 0 species subgroup 2 1395 2315253 0 1 species Vibrio antiquarius 483 150340 species 1 0 50719 912 Vibrio diabolicus 1754 Vibrio harveyi 669 0 species 1 190895 1066 Vibrio rotiferianus species 1 0 0 1 species Vibrio jasicida 534 766224 0 1 species Vibrio parahaemolyticus 2051 670 740 Vibrio mimicus 674 0 species 1 2025808 449 Vibrio qinghaiensis species 1 0 1192 Vibrio anguillarum 55601 0 species 1 0 species 1 611 Vibrio tritonius 1435069 Vibrio tapetis 1421 52443 0 1 species 633 Vibrio nigripulchritudo 28173 0 species 1 0 species 1 911 Vibrio tasmaniensis 212663 0 no rank 2 931 2614977 2014742 Vibrio sp. 2521-89 350 1 species 0 1 species 0 1116375 Vibrio sp. EJY3 581 839 1891919 0 1 species group species 1 0 29498 839 Vibrio tubiashii 0 species 1 731 Vibrio gazogenes 687 0 species 1 755 Vibrio furnissii 29494 Aliivibrio 3278 511678 1 0 4 genus 23 1 species 0 668 Aliivibrio fischeri 1129 1 species 0 40269 Aliivibrio salmonicida 805 1 species 0 80852 Aliivibrio wodanis 1321 135622 Alteromonadales 98076 106 order 157 1 0 20304 Pseudoalteromonadaceae 267888 1 0 family 19 25 0 1 395 genus 24 20285 Pseudoalteromonas 53246 species 1 0 43659 675 Pseudoalteromonas tetraodonis Pseudoalteromonas piscicida 594 43662 0 1 species 0 species 1 1116 Pseudoalteromonas tunicata 314281 0 1 species Pseudoalteromonas agarivorans 806 176102 0 species 1 613 Pseudoalteromonas rubra 43658 Pseudoalteromonas nigrifaciens 740 28109 0 1 species species 1 0 43657 987 Pseudoalteromonas luteoviolacea 0 5 no rank 4862 194690 1514074 1713 Pseudoalteromonas sp. NC201 species 1 0 234831 761 Pseudoalteromonas sp. SM9913 species 1 0 species 1 0 1720343 889 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 species 1 699 Pseudoalteromonas sp. 13-15 1761891 800 Pseudoalteromonas sp. Bsw20308 283699 0 species 1 152297 Pseudoalteromonas issachenkonii 684 1 species 0 species 1 0 28107 779 Pseudoalteromonas espejiana 0 1 species Pseudoalteromonas aliena 872 247523 species 1 0 161398 921 Pseudoalteromonas phenolica Pseudoalteromonas haloplanktis 648 228 0 1 species 672 Pseudoalteromonas translucida 166935 0 species 1 0 species 1 1354 Pseudoalteromonas atlantica 288 species 1 0 394751 786 Pseudoalteromonas arctica 1 species 0 298657 Pseudoalteromonas spongiae 1120 267375 645 Pseudoalteromonas marina species 1 0 1348114 1016 Pseudoalteromonas piratica species 1 0 1 0 family 37 25 17139 Shewanellaceae 267890 0 1 214 genus 24 17102 Shewanella 22 Shewanella baltica 1730 62322 0 1 species 2018305 Shewanella bicestrii 408 1 species 0 271097 734 Shewanella sediminis species 1 0 species 1 0 225848 1213 Shewanella psychrophila 0 1 species Shewanella violacea 1188 60217 0 species 1 417 Shewanella marisflavi 260364 271098 1787 Shewanella halifaxensis species 1 0 93973 Shewanella japonica 1184 1 species 0 0 1 species Shewanella loihica 450 359303 56812 Shewanella frigidimarina 928 1 species 0 0 species 1 556 Shewanella piezotolerans 404011 Shewanella oneidensis 442 70863 0 1 species 478 Shewanella pealeana 70864 0 species 1 no rank 6 0 196818 2776 0 1 species Shewanella sp. WE21 438 2029986 572 Shewanella sp. W3-18-1 351745 0 species 1 1 species 0 2059264 Shewanella sp. Pdp11 533 0 1 species Shewanella sp. ANA-3 433 94122 Shewanella sp. MR-4 372 60480 0 1 species Shewanella sp. MR-7 428 60481 0 1 species species 1 0 192073 610 Shewanella denitrificans 60478 Shewanella amazonensis 424 1 species 0 60961 Shewanella woodyi 920 1 species 0 24 Shewanella putrefaciens 643 1 species 0 5 family 3 0 1 267892 609 Ferrimonadaceae 0 1 11 genus 2 604 Ferrimonas 44011 species 1 0 44012 593 Ferrimonas balearica 75 family 30 0 1 72275 46121 Alteromonadaceae 2 2 genus 0 1 261825 Agarivorans 574 0 1 species Agarivorans gilvus 572 680279 Glaciecola 1661 89404 0 1 3 15 genus 300231 784 Glaciecola nitratireducens species 1 0 0 no rank 1 862 2618684 0 species 1 862 Glaciecola sp. 4H-3-7+YE-5 983545 226 34891 Alteromonas genus 107 10 1 0 species 1 0 589873 992 Alteromonas australica 0 species 1 614 Alteromonas naphthalenivorans 715451 0 species 1 783 Alteromonas stellipolaris 233316 287094 Alteromonas addita 632 1 species 0 species 1 0 314275 2933 Alteromonas mediterranea Alteromonas macleodii 26831 28108 0 1 species 0 no rank 3 1999 2614992 715 Alteromonas sp. MB-3u-76 2058133 0 species 1 1917158 721 Alteromonas sp. RW2A1 species 1 0 1777491 563 Alteromonas sp. Mac1 species 1 0 830 Lacimicrobium 1751872 0 1 3 genus 2 1526571 Lacimicrobium alkaliphilum 827 1 species 0 2 2 genus 0 1 1621534 Paraglaciecola 1670 1 species 0 326544 Paraglaciecola psychrophila 1668 Marinobacter 6420 2742 1 0 10 genus 149 species 1 0 1874317 597 Marinobacter salinus 1 species 0 1033846 Marinobacter adhaerens 642 0 1 species Marinobacter psychrophilus 569 330734 917 Marinobacter hydrocarbonoclasticus 2743 0 species 1 3 no rank 0 83889 1874 1749259 644 Marinobacter sp. LQ44 species 1 0 0 1 species Marinobacter sp. BSs20148 557 490759 1 species 0 1671721 Marinobacter sp. CP1 673 1140 Marinobacter salarius 1420917 0 species 1 532 Marinobacter similis 1420916 0 species 1 267889 8309 Colwelliaceae family 11 9 1 0 1 0 2 genus 5 Thalassotalea 1045 1518149 0 1 species Thalassotalea crassostreae 1040 1763536 Colwellia 7253 28228 0 1 6 53 genus 0 1 species Colwellia psychrerythraea 1396 28229 196834 4202 no rank 3 0 58049 Colwellia sp. MT41 1337 1 species 0 1816218 Colwellia sp. PAMC 20917 1318 1 species 0 0 species 1 1547 Colwellia sp. PAMC 21821 1816219 1 species 0 1967665 Colwellia beringensis 1602 family 5 6 1 0 267893 1743 Idiomarinaceae 1738 Idiomarina 135575 1 0 genus 45 5 1 species 0 1096243 Idiomarina piscisalsi 401 484 Idiomarina loihiensis 135577 0 species 1 2614829 808 no rank 2 0 species 1 0 2055892 377 Idiomarina sp. X4 Idiomarina sp. OT37-5b 431 2100422 0 1 species Psychromonadaceae 2407 267894 0 1 4 4 family 67572 2403 Psychromonas genus 12 3 1 0 357794 Psychromonas ingrahamii 1225 1 species 0 1166 2614957 0 no rank 1 0 1 species Psychromonas sp. CNPT3 1166 314282 Moritellaceae 1287 267891 0 1 3 10 family 0 1 7 genus 2 1277 Moritella 58050 1 species 0 80854 Moritella viscosa 1270 54 order 316 1 0 135614 Xanthomonadales 47181 39 384 family 0 1 32033 Xanthomonadaceae 40085 0 1 9 238 genus Stenotrophomonas 10295 40323 0 species 1 617 Stenotrophomonas rhizophila 216778 688 Stenotrophomonas nitritireducens 83617 0 species 1 0 1 species group 4682 995085 40324 4682 Stenotrophomonas maltophilia species 1 0 2814 196198 0 no rank 4 species 1 0 2005046 691 Stenotrophomonas sp. WZN-1 1 species 0 1793721 Stenotrophomonas sp. KCTC 12332 684 1904944 Stenotrophomonas sp. LM091 599 1 species 0 species 1 0 1827305 840 Stenotrophomonas sp. MYb57 species 1 0 128780 1256 Stenotrophomonas acidaminiphila 338 Xanthomonas 17667 17 518 genus 0 1 0 species 1 539 Xanthomonas euvesicatoria 456327 Xanthomonas fragariae 728 48664 0 1 species species 1 0 442694 518 Xanthomonas perforans Xanthomonas campestris 2923 339 0 1 species Xanthomonas translucens 1502 343 0 1 species 581 Xanthomonas hortorum 56454 0 species 1 0 1 species Xanthomonas vesicatoria 804 56460 Xanthomonas sacchari 834 56458 0 1 species 1 species 0 1985254 Xanthomonas phaseoli 476 56459 Xanthomonas vasicola 427 1 species 0 0 species 1 2664 Xanthomonas oryzae 347 0 1 species Xanthomonas axonopodis 429 53413 0 1 species Xanthomonas alfalfae 475 366650 643453 3715 species group 2 0 1 species 0 366648 Xanthomonas fuscans 817 0 species 1 2898 Xanthomonas citri 346 0 species 1 534 Xanthomonas albilineans 29447 Lysobacter 6397 68 0 1 5 78 genus 0 1 species Lysobacter enzymogenes 1175 69 1 species 0 262324 Lysobacter gummosus 1122 0 1 species Lysobacter antibioticus 2132 84531 1 species 0 435897 Lysobacter capsici 1890 2370 Xylella 2204 2 genus 3 1 0 0 species 1 2201 Xylella fastidiosa 2371 83614 Luteimonas 810 2 genus 5 1 0 0 species 1 805 Luteimonas sp. 100111 2006110 0 1 38 genus 3 2328 Pseudoxanthomonas 83618 0 1 species Pseudoxanthomonas suwonensis 1660 314722 415229 Pseudoxanthomonas spadix 630 1 species 0 88 family 14 0 1 1775411 6780 Rhodanobacteraceae Dyella 2578 231454 0 1 4 58 genus 1379159 755 Dyella jiangningensis species 1 0 0 species 1 902 Dyella thiooxydans 445710 231455 863 Dyella japonica species 1 0 17 genus 2 0 1 75309 1038 Rhodanobacter 0 species 1 1021 Rhodanobacter denitrificans 666685 323413 Dokdonella 1220 2 15 genus 0 1 1205 Dokdonella koreensis 323415 0 species 1 485 Frateuria 70411 1 0 genus 10 2 Frateuria aurantia 475 81475 0 1 species 683 Luteibacter 242605 1 0 genus 4 2 Luteibacter rhizovicinus 679 242606 0 1 species 2233801 688 genus 1 0 2021234 688 Xanthomonadales bacterium D13 species 1 0 1 0 4 order 17 Immundisolibacterales 1029 1934945 1934946 1012 Immundisolibacteraceae family 15 3 1 0 1934947 Immundisolibacter 997 2 13 genus 0 1 1 species 0 1810504 Immundisolibacter cernigliae 984 10135 118884 0 14 no rank 1 0 genus 19 2 1097 Sedimenticola 349742 0 1 species Sedimenticola thiotaurini 1078 1543721 0 1 2 1 genus Pseudohongiella 777 1524249 0 species 1 776 Pseudohongiella spirulinae 1249552 Candidatus Thioglobus 2784 655184 1 0 3 genus 37 1427364 Candidatus Thioglobus singularis 1867 1 species 0 0 1 species Candidatus Thioglobus autotrophicus 880 1705394 1 0 2 genus 8 Thiolapillus 670 1608298 0 species 1 662 Thiolapillus brandeum 1076588 clade 1 0 198346 1647 Candidatus Baumannia cicadellinicola 1647 186490 0 1 species 4 clade 0 32036 3160 species 1 0 113267 851 Bathymodiolus septemdierum thioautotrophic gill symbiont species 1 0 410330 1230 Calyptogena okutanii thioautotrophic gill symbiont Candidatus Ruthia 1079 1541743 1 0 2 genus 14 0 1 species Candidatus Ruthia magnifica 1065 386487 0 class 6 1565 1807140 225057 Acidithiobacillales 1565 6 35 order 0 1 5 13 family 0 1 225058 Acidithiobacillaceae 1530 1517 Acidithiobacillus 119977 0 1 28 genus 4 33059 506 Acidithiobacillus caldus species 1 0 0 species 1 466 Acidithiobacillus ferrooxidans 920 0 species 1 517 Acidithiobacillus ferrivorans 160808 clade 5 0 2498710 436 436 67814 0 5 phylum 436 Caldisericia 693071 1 0 class 3 5 693072 433 Caldisericales 3 order 4 0 1 430 Caldisericaceae 693073 0 1 2 family 3 428 Caldisericum 693074 0 1 1 genus 2 1 species 0 693075 Caldisericum exile 427 phylum 44 0 200918 12659 class 26 44 1 0 188708 12659 Thermotogae order 14 8 1 0 1643947 4165 Petrotogales family 7 0 1643949 4151 Marinitoga 2544 160798 1 0 3 genus 26 no rank 1 0 2640159 1214 species 1 0 1545835 1214 Marinitoga sp. 1137 species 1 0 149715 1304 Marinitoga piezophila 1 genus 2 0 1 1511648 927 Defluviitoga 1006576 Defluviitoga tunisiensis 926 1 species 0 Petrotoga 680 28236 0 1 2 2 genus 0 species 1 678 Petrotoga mobilis 69499 2419 Thermotogales 7566 28 order 26 1 0 family 14 17 1 0 188709 2982 Thermotogaceae Thermotoga 1539 2335 1 0 11 genus 52 0 species 1 131 Thermotoga naphthophila 93930 450 2631113 0 4 no rank 126738 Thermotoga sp. RQ7 131 1 species 0 0 species 1 114 Thermotoga sp. 2812B 1157948 1 species 0 126740 Thermotoga sp. RQ2 103 species 1 0 1157947 102 Thermotoga sp. Cell2 0 1 species Thermotoga maritima 150 2336 2337 Thermotoga neapolitana 143 1 species 0 0 species 1 376 Thermotoga profunda 1508420 1508419 120 Thermotoga caldifontis species 1 0 0 species 1 117 Thermotoga petrophila 93929 1429 Pseudothermotoga 1643951 1 0 genus 28 5 species 1 0 57487 121 Pseudothermotoga hypogea 177758 Pseudothermotoga lettingae 457 1 species 0 119394 Pseudothermotoga thermarum 366 1 species 0 38322 Pseudothermotoga elfii 457 1 species 0 16 family 10 0 1 1643950 4558 Fervidobacteriaceae 1 0 genus 15 4 1328 Fervidobacterium 2422 Fervidobacterium pennivorans 530 93466 0 1 species species 1 0 2424 552 Fervidobacterium nodosum 0 species 1 231 Fervidobacterium islandicum 2423 5 genus 20 1 0 2420 Thermosipho 3214 0 species 1 763 Thermosipho melanesiensis 46541 0 2 no rank 1485 2676525 728 Thermosipho sp. 1063 1462747 0 species 1 species 1 0 1437364 757 Thermosipho sp. 1070 946 Thermosipho africanus 2421 0 species 1 7 6 order 0 1 1643946 Kosmotogales 902 1 0 6 family 1 Kosmotogaceae 896 1643948 0 1 3 4 genus Kosmotoga 662 651456 651457 Kosmotoga olearia 339 1 species 0 0 1 species Kosmotoga pacifica 319 1330330 0 1 1 genus 2 233 Mesotoga 1184396 1 species 0 1184387 Mesotoga prima 232