members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 6896 4569 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4078283 31 Bacteria 4051456 31 0 4283 2 superkingdom 1 805 0 8 200930 phylum 805 Deferribacteres 1 class 68337 8 0 2 803 7 0 191393 order Deferribacteraceae 803 16 0 7 1 191394 family 158 Calditerrivibrio 1 545865 genus 0 2 1 0 1 species 477976 Calditerrivibrio nitroreducens 157 234 1 0 53572 genus 0 1 197162 species Deferribacter desulfuricans 234 0 1 2 genus 117999 1 Denitrovibrio 240 species 118000 1 0 239 Denitrovibrio acetiphilus 155 0 1 2351 genus Flexistipes sinusarabici 155 0 1 species 2352 1967 0 203 1 1224 phylum Proteobacteria 412546 345 0 149 1 28216 class Betaproteobacteria 86300 1 206389 order 0 98 22 4546 Rhodocyclales 30 0 6 75787 family 1 Rhodocyclaceae 1042 228 75788 no rank 0 1 1 0 1898103 species Rhodocyclaceae bacterium 228 genus 551759 1 11 0 2 235 Aromatoleum 0 1 species 551760 Aromatoleum aromaticum 224 Azospira 549 0 14 2 genus 146937 1 Azospira oryzae 535 0 1 146939 species Zoogloeaceae 3180 0 12 82 family 2008794 1 66 0 5 1 12960 genus Azoarcus 1363 720 2629479 no rank 2 0 340 Azoarcus sp. KH32C species 748247 1 0 380 Azoarcus sp. CIB 198107 species 1 0 Azoarcus sp. SY39 324 1 0 species 2067960 418699 species 0 1 253 Azoarcus olearius 0 6 64 1 33057 genus Thauera 1735 2 0 no rank 2609274 779 374 Thauera sp. MZ1T species 85643 0 1 0 1 species 2005884 Thauera sp. K11 405 Thauera chlorobenzoica 258 0 1 species 96773 Thauera aromatica 289 0 1 species 59405 0 1 1134435 species Thauera humireducens 345 1 2008795 family 1 0 3 226 Azonexaceae 1 genus 73029 4 0 2 225 Dechloromonas 221 Dechloromonas aromatica 259537 species 0 1 287 33809 no rank 0 2 244 Betaproteobacteria bacterium GR16-43 1904640 species 0 1 species 543913 0 1 43 beta proteobacterium CB 119066 no rank 11 0 741 3 189384 genus 1 0 3 Candidatus Tremblaya princeps 189385 species 0 1 23 1 0 genus 1301080 23 Candidatus Nasuia deltocephalinicola species 1160784 0 1 26 0 1 1381133 genus 26 Candidatus Profftella armatura species 669502 1 0 1 genus 327159 2 0 4 281 Candidatus Accumulibacter 277 Candidatus Accumulibacter phosphatis 327160 species 1 0 33055 genus 1 6 0 6 408 Kinetoplastibacterium 64 Kinetoplastibacterium blastocrithidii species 233181 1 0 Candidatus Kinetoplastibacterium oncopeltii 54 1 0 species 994696 0 1 994692 species Candidatus Kinetoplastibacterium desouzaii 111 0 1 species 994695 Candidatus Kinetoplastibacterium galatii 99 species 33056 0 1 74 Candidatus Kinetoplastibacterium crithidii 0 25 42 32003 order 1 Nitrosomonadales 3584 453 2772226 family 4 0 Sulfuricella 192 2 0 6 genus 935200 1 Sulfuricella denitrificans 186 0 1 species 649841 1 1778653 genus 0 2 2 261 Sulfuriferula 259 no rank 2637784 1 0 259 Sulfuriferula sp. AH1 1985873 species 1 0 Gallionellaceae 433 5 0 18 1 90627 family 2 0 5 1 314343 genus Sideroxydans 262 0 1 63745 species Sideroxydans lithotrophicus 257 0 2 2 1 genus 96 Gallionella 153 0 1 370405 species Gallionella capsiferriformans 151 864 Methylophilaceae 1 32011 family 0 8 13 1 genus 359407 0 3 2 118 Methylotenera Methylotenera versatilis 57 0 1 1055487 species 0 1 359408 species Methylotenera mobilis 59 2 0 2 404 genus 1 Methylobacillus 138 0 1 405 species Methylobacillus flagellatus 136 16 genus 0 1 97 0 1 2630143 no rank 97 97 Methylophilus sp. TWE2 1662285 species 0 1 81682 genus 1 3 0 2 342 Methylovorus 174 0 1 2634027 no rank 0 1 species 887061 Methylovorus sp. MP688 174 166 Methylovorus glucosotrophus 266009 species 0 1 3 0 1 1679002 genus 1 Candidatus Methylopumilus 161 species 1581557 0 1 105 Candidatus Methylopumilus planktonicus Candidatus Methylopumilus turicensis 55 1 0 1581680 species Thiobacillaceae 161 0 3 2 family 2008790 1 Thiobacillus 159 0 2 1 1 919 genus Thiobacillus denitrificans 158 0 1 36861 species 2008793 family 1 0 10 5 560 Sterolibacteriaceae 10 0 2 1 genus 1054211 Sulfuritalea 295 748811 species 0 1 285 Sulfuritalea hydrogenivorans 1 genus 378210 0 2 6 255 Methyloversatilis 0 1 no rank 2639971 249 0 1 1842540 species Methyloversatilis sp. RAC08 249 Nitrosomonadaceae 1088 0 5 11 1 206379 family 368 genus 35798 3 0 164 Nitrosospira briensis 35799 species 0 1 0 1 1231 species Nitrosospira multiformis 97 Nitrosospira lacus 107 0 1 1288494 species 0 7 9 1 914 genus Nitrosomonas 715 Nitrosomonas eutropha 94 0 1 species 916 240 2609265 no rank 0 2 Nitrosomonas sp. Is79A3 115 1 0 261292 species 153948 species 0 1 125 Nitrosomonas sp. AL212 44574 species 0 1 111 Nitrosomonas communis 1 0 915 species Nitrosomonas europaea 153 species 44577 0 1 108 Nitrosomonas ureae Burkholderiales 69565 232 0 857 order 80840 1 17085 Comamonadaceae 1 family 80864 0 58 251 219181 genus 1 0 3 6 709 Ottowia 1 0 2645081 no rank 322 0 1 1658672 species Ottowia sp. oral taxon 894 322 1 0 2109914 species Ottowia sp. KADR8-3 381 333 Verminephrobacter 1 364316 genus 0 2 1 332 Verminephrobacter eiseniae 364317 species 0 1 1 0 2 1 genus 238749 Diaphorobacter 395 Diaphorobacter polyhydroxybutyrativorans 394 0 1 1546149 species 2678886 genus 1 0 398 Melaminivora sp. SC2-7 398 1 0 2116657 species 166 0 1 1436289 genus 166 Candidatus Symbiobacter mobilis 1436290 species 0 1 1117 Hydrogenophaga 47420 genus 1 0 19 4 no rank 2610897 2 0 843 Hydrogenophaga sp. PBC 450 0 1 795665 species 393 Hydrogenophaga sp. RAC07 species 1842537 1 0 1763535 species 0 1 255 Hydrogenophaga crassostreae 0 3 1 1 genus 52972 Polaromonas 830 2638319 no rank 0 1 420 420 Polaromonas sp. JS666 296591 species 0 1 409 Polaromonas naphthalenivorans species 216465 1 0 0 5 42 34072 genus 1 Variovorax 2343 species 34073 1 0 1091 Variovorax paradoxus 436515 species 0 1 439 Variovorax boronicumulans 771 no rank 663243 2 0 1795631 species 0 1 214 Variovorax sp. PAMC 28711 557 Variovorax sp. PMC12 2126319 species 0 1 Comamonas 1466 0 4 14 1 genus 283 1 0 285 species Comamonas testosteroni 688 326 Comamonas kerstersii species 225992 0 1 1082851 species 1 0 438 Comamonas serinivorans 1 genus 28065 5 0 12 1165 Rhodoferax 1 0 species 192843 Rhodoferax ferrireducens 189 Rhodoferax saidenbachensis 281 0 1 species 1484693 278 Rhodoferax antarcticus species 81479 0 1 Rhodoferax koreense 405 0 1 species 1842727 Acidovorax 3080 9 0 141 1 12916 genus species 80869 0 1 393 Acidovorax citrulli 327 Acidovorax ebreus 721785 species 1 0 Acidovorax avenae 400 0 1 species 80867 species 553814 0 1 360 Acidovorax sp. NA3 no rank 2684926 4 0 1459 309 Acidovorax sp. RAC01 1842533 species 1 0 361 Acidovorax sp. JS42 species 232721 0 1 1858609 species 0 1 333 Acidovorax sp. T1 Acidovorax sp. KKS102 456 1 0 358220 species Alicycliphilus 505 6 0 2 1 genus 201096 species 179636 0 1 499 Alicycliphilus denitrificans 0 2 5 1 1649468 genus Melaminivora 425 2641902 no rank 1 0 420 420 Melaminivora sp. SC2-9 2109913 species 1 0 genus 352450 1 0 2 2 222 Simplicispira 220 Simplicispira sp. SC1-8 2109915 species 1 0 474 2490452 genus 2 0 0 1 species 1458426 Comamonadaceae bacterium B1 238 species 1458425 1 0 236 Comamonadaceae bacterium A1 1 genus 174951 0 2 9 851 Ramlibacter 842 Ramlibacter tataouinensis species 94132 0 1 Delftia 2113 0 5 81 1 genus 80865 0 1 180282 species Delftia tsuruhatensis 486 493 Delftia acidovorans 80866 species 0 1 no rank 2613839 0 2 1053 Delftia sp. HK171 503 0 1 species 1920191 Delftia sp. Cs1-4 550 0 1 742013 species 3 0 3 1 665874 genus Limnohabitans 242 2626134 no rank 0 2 239 species 1678128 0 1 140 Limnohabitans sp. 63ED37-2 Limnohabitans sp. 103DPR2 99 1 0 1678129 species 283 2 0 80841 no rank 148 Burkholderiales bacterium GJ-E10 1469502 species 0 1 0 1 species 1834205 Burkholderiales bacterium YL45 135 75682 family 1 28 0 83 8019 Oxalobacteraceae Massilia 2525 0 57 6 1 149698 genus 2609279 no rank 0 2 1035 481 Massilia sp. WG5 1707785 species 0 1 Massilia sp. NR 4-1 554 0 1 1678028 species Massilia putida 421 0 1 1141883 species 2045208 species 1 0 417 Massilia sp. B2 species 2072590 0 1 595 Massilia sp. ZMN-3 202907 genus 1 0 4 32 1240 Collimonas 362 Collimonas fungivorans species 158899 0 1 0 1 species 279113 Collimonas pratensis 423 species 279058 0 1 423 Collimonas arenae genus 963 1 6 0 70 1924 Herbaspirillum 490 Herbaspirillum frisingense species 92645 0 1 Herbaspirillum seropedicae 487 1 0 964 species 0 1 species 341045 Herbaspirillum hiltneri 295 235 no rank 2624150 1 0 2025949 species 0 1 235 Herbaspirillum sp. meg3 347 Herbaspirillum rubrisubalbicans 80842 species 0 1 1770 Janthinobacterium genus 29580 1 22 0 7 368607 species 0 1 375 Janthinobacterium svalbardensis 219 Janthinobacterium agaricidamnosum 55508 species 1 0 1154 0 4 no rank 2610881 170 Janthinobacterium sp. Marseille species 375286 0 1 Janthinobacterium sp. B9-8 142 0 1 1236179 species 0 1 1644131 species Janthinobacterium sp. 1_2014MBL_MicDiv 438 0 1 species 1938606 Janthinobacterium sp. LM6 404 Herminiimonas 239 0 3 1 1 genus 303379 Herminiimonas arsenitoxidans 104 1 0 species 1809410 204773 species 0 1 134 Herminiimonas arsenicoxydans 846 genus 0 1 238 238 Oxalobacter formigenes 847 species 1 0 3859 no rank 224471 0 17 genus 28067 1 0 21 2 446 Rubrivivax Rubrivivax gelatinosus 425 0 1 28068 species 2 0 7 1 genus 318147 Paucibacter 339 1 0 2642959 no rank 332 332 Paucibacter sp. KCTC 42545 species 1768242 0 1 [Polyangium] brachysporum 342 0 1 species 413882 518 Thiomonas 1 32012 genus 0 2 8 Thiomonas intermedia 510 0 1 species 926 Rhizobacter 430 0 2 6 212743 genus 1 424 Rhizobacter gummiphilus species 946333 0 1 Mitsuaria 476 7 0 2 1 genus 65047 469 no rank 2648776 0 1 469 Mitsuaria sp. 7 1658665 species 1 0 555 Roseateles 1 genus 93681 16 0 2 Roseateles depolymerans 539 0 1 species 76731 357 Methylibium 1 genus 316612 0 2 2 Methylibium petroleiphilum 355 0 1 species 105560 1 88 genus 2 0 11 396 Leptothrix Leptothrix cholodnii 385 1 0 species 34029 Burkholderiaceae 26028 181 0 83 1 119060 family 5 0 89 48736 genus 1 Ralstonia 3075 species 105219 0 1 421 Ralstonia mannitolilytica species 305 0 1 1432 Ralstonia solanacearum Ralstonia pickettii 696 1 0 species 329 437 Ralstonia insidiosa 190721 species 0 1 99 genus 2571159 0 1 Paraburkholderia rhizoxinica 99 0 1 species 412963 32008 genus 1 608 0 41 12835 Burkholderia 111527 species group 7 0 1762 57975 species 0 1 408 Burkholderia thailandensis 0 1 species 1637831 Burkholderia sp. MSMB617WGS 161 species 28450 1 0 467 Burkholderia pseudomallei species 1637837 0 1 169 Burkholderia sp. MSMB0266 266 Burkholderia oklahomensis 342113 species 0 1 Burkholderia sp. MSMB0852 156 0 1 1637841 species 13373 species 0 1 135 Burkholderia mallei no rank 2613784 0 11 2256 Burkholderia sp. 2002721687 174 0 1 1468409 species 186 Burkholderia sp. CCGE1003 640512 species 1 0 1 0 1740163 species Burkholderia sp. Bp7605 270 139 Burkholderia sp. PAMC 26561 species 1795043 0 1 246 Burkholderia sp. CCGE1001 640510 species 0 1 250 Burkholderia sp. RPE67 species 758796 1 0 198 Burkholderia sp. KJ006 416344 species 0 1 0 1 species 1678678 Burkholderia sp. HB1 266 0 1 species 1795874 Burkholderia sp. PAMC 28687 166 0 1 species 1740162 Burkholderia sp. Bp5365 128 0 1 species 1097668 Burkholderia sp. YI23 233 species 28095 0 1 559 Burkholderia gladioli 0 1 species 41899 Burkholderia plantarii 326 87882 species group 0 19 6769 145 Burkholderia pyrrocinia species 60550 1 0 325 Burkholderia ambifaria species 152480 1 0 Burkholderia stabilis 356 0 1 95485 species [Pseudomonas] mesoacidophila 215 0 1 265293 species 221 Burkholderia pseudomultivorans 1207504 species 0 1 482957 species 0 1 364 Burkholderia lata 1 0 488447 species Burkholderia contaminans 233 1 0 species 1503055 Burkholderia territorii 114 Burkholderia dolosa 212 1 0 species 152500 268 Burkholderia stagnalis species 1503054 1 0 184 Burkholderia latens 488446 species 0 1 species 488731 0 1 199 Burkholderia seminalis Burkholderia metallica 178 0 1 488729 species 0 1 species 87883 Burkholderia multivorans 501 0 1 species 95486 Burkholderia cenocepacia 984 149 Burkholderia diffusa species 488732 0 1 Burkholderia vietnamiensis 314 0 1 species 60552 species 101571 1 0 700 Burkholderia ubonensis species 292 1 0 1107 Burkholderia cepacia 0 1 337 species Burkholderia glumae 555 2124 Pandoraea 93217 genus 1 49 0 10 Pandoraea pnomenusa 254 1 0 species 93220 species 93219 1 0 201 Pandoraea norimbergensis 0 1 445709 species Pandoraea thiooxydans 197 249 Pandoraea oxalativorans species 573737 0 1 246 Pandoraea pulmonicola 93221 species 1 0 Pandoraea apista 250 0 1 species 93218 0 1 species 93222 Pandoraea sputorum 221 239 Pandoraea vervacti 656178 species 0 1 0 1 656179 species Pandoraea faecigallinarum 218 282 1827195 genus 1 0 0 1 758793 species Burkholderia sp. RPE64 282 0 157 9 genus 106589 1 Cupriavidus 3855 Cupriavidus pinatubonensis 437 0 1 248026 species 919 no rank 2640874 0 2 1 0 876364 species Cupriavidus sp. USMAA2-4 474 1389192 species 0 1 445 Cupriavidus sp. USMAHM13 68895 species 0 1 403 Cupriavidus basilensis 469 Cupriavidus sp. USMAA1020 species 367825 0 1 species 82541 0 1 358 Cupriavidus gilardii 765 Cupriavidus necator 106590 species 0 1 0 1 119219 species Cupriavidus metallidurans 347 Paraburkholderia 3397 12 0 83 1 1822464 genus 2615204 no rank 1 0 227 227 Paraburkholderia sp. SOS3 species 1926494 0 1 0 1 species 75105 Paraburkholderia caribensis 462 species 311230 0 1 277 Paraburkholderia terrae Paraburkholderia phenoliruptrix 222 1 0 252970 species 298 Paraburkholderia hospita species 169430 0 1 Paraburkholderia aromaticivorans 358 0 1 species 2026199 311 Paraburkholderia sprentiae 948107 species 1 0 309 Paraburkholderia fungorum 134537 species 0 1 0 1 261302 species Paraburkholderia phytofirmans 288 0 1 148447 species Paraburkholderia phymatum 260 36873 species 0 1 302 Paraburkholderia xenovorans 0 3 genus 44013 180 64 Polynucleobacter duraquae species 1835254 1 0 0 1 species 576610 Polynucleobacter necessarius 50 66 Polynucleobacter asymbioticus species 576611 0 1 Alcaligenaceae 13434 43 0 110 1 506 family 305976 genus 1 0 2 5 150 Pusillimonas 145 no rank 2640016 1 0 145 Pusillimonas sp. T7-7 1007105 species 0 1 4934 Achromobacter 222 genus 1 0 180 6 837 Achromobacter spanius 217203 species 0 1 1953 Achromobacter xylosoxidans 85698 species 0 1 217204 species 0 1 388 Achromobacter insolitus 2626865 no rank 1 0 516 Achromobacter sp. AONIH1 516 0 1 species 1758194 1060 Achromobacter denitrificans species 32002 0 1 371 290425 genus 2 0 163 Advenella mimigardefordensis species 302406 0 1 1 0 310575 species Advenella kashmirensis 208 1 genus 517 0 17 218 6095 Bordetella 691 Bordetella bronchiseptica species 518 0 1 1 0 103855 species Bordetella hinzii 402 species 35814 1 0 143 Bordetella holmesii 463040 species 0 1 449 Bordetella genomosp. 13 Bordetella pertussis 283 0 1 520 species Bordetella parapertussis 368 0 1 species 519 405 Bordetella pseudohinzii 1331258 species 0 1 0 1 species 123899 Bordetella trematum 356 Bordetella bronchialis 385 0 1 463025 species Bordetella genomosp. 9 345 0 1 1416803 species 0 1 species 463024 Bordetella genomosp. 6 354 1416806 species 1 0 394 Bordetella genomosp. 8 no rank 2630031 0 1 432 Bordetella sp. H567 432 0 1 1697043 species Bordetella avium 176 0 1 species 521 0 1 species 463014 Bordetella flabilis 359 335 Bordetella petrii 94624 species 0 1 1 1921582 genus 0 2 3 476 Orrella 0 1 1851544 species Orrella dioscoreae 473 Castellaniella 410 0 2 13 genus 359336 1 397 Castellaniella defragrans species 75697 0 1 0 4 2 1 90243 genus Oligella 81 77 Oligella urethralis species 90245 0 1 0 2 4 genus 507 1 Alcaligenes 465 Alcaligenes faecalis 461 1 0 511 species Basilea 78 0 2 2 1 genus 1472344 76 Basilea psittacipulmonis species 1472345 0 1 1 1100891 genus 1 0 2 101 Paenalcaligenes 643674 species 0 1 100 Paenalcaligenes hominis 163 Taylorella 29574 genus 1 0 3 1 0 1 29575 species Taylorella equigenitalis 78 0 1 species 84590 Taylorella asinigenitalis 84 1 order 206351 87 0 35 7428 Neisseriales 1 1499392 family 43 0 13 3502 Chromobacteriaceae 451 Pseudogulbenkiania genus 568394 1 2 0 9 no rank 2642558 1 0 442 0 1 species 748280 Pseudogulbenkiania sp. NH8B 442 507 Laribacter 1 168470 genus 2 0 6 Laribacter hongkongensis 501 1 0 168471 species 187 genus 1 0 2 2 340 Aquaspirillum 0 1 no rank 2620219 338 Aquaspirillum sp. LM1 338 0 1 species 1938604 1843 no rank 90153 4 0 genus 535 1 30 0 4 1843 Chromobacterium 730 Chromobacterium vaccinii species 1108595 0 1 0 1 536 species Chromobacterium violaceum 549 534 2641838 no rank 0 1 534 Chromobacterium sp. ATCC 53434 species 2059672 0 1 genus 885864 1 7 0 2 318 Jeongeupia 311 2619593 no rank 1 0 1 0 1906741 species Jeongeupia sp. USM3 311 46 0 21 1 481 family Neisseriaceae 3839 no rank 421605 0 1 108 108 Neisseriaceae bacterium DSM 100970 species 2052837 0 1 0 5 3 1 59 genus Vitreoscilla 297 89 1 0 2627922 no rank 1 0 species 96942 Vitreoscilla sp. C1 89 0 1 63 species Vitreoscilla filiformis 203 88 71 genus 0 1 Simonsiella muelleri 88 0 1 72 species genus 1193515 1 0 153 0 1 species 1196083 Snodgrassella alvi 153 2 0 4 538 genus 1 Eikenella 187 Eikenella corrodens 183 1 0 species 539 0 12 50 482 genus 1 Neisseria 2960 Neisseria gonorrhoeae 205 0 1 485 species Neisseria zoodegmatis 168 0 1 species 326523 172 Neisseria weaveri species 28091 1 0 2 0 no rank 2623750 565 412 Neisseria sp. KEM232 species 655307 1 0 Neisseria sp. 10022 153 0 1 1853276 species Neisseria elongata 226 0 1 495 species 287 Neisseria lactamica 486 species 0 1 237 Neisseria sp. 10023 species 1853278 0 1 0 1 490 species Neisseria sicca 224 1 0 species 487 Neisseria meningitidis 599 1 0 488 species Neisseria mucosa 227 580370 class 1 6 0 1 395 Zetaproteobacteria 5 0 4 1 order 580371 Mariprofundales 394 Mariprofundaceae 390 0 12 4 1 580372 family 0 3 6 genus 377315 1 Mariprofundus 378 0 1 1921086 species Mariprofundus aestuarium 190 Mariprofundus ferrinatatus 182 0 1 1921087 species Alphaproteobacteria 102870 0 543 381 1 28211 class 15668 Rhodospirillales 1 order 204441 148 0 65 41295 family 1 150 0 30 9546 Rhodospirillaceae 1 genus 1543705 0 8 2 856 Nitrospirillum 0 1 28077 species Nitrospirillum amazonense 848 19 0 3 1 genus 1081 Rhodospirillum 917 species 34018 0 1 590 Rhodospirillum centenum 0 1 1085 species Rhodospirillum rubrum 308 96 genus 1263978 0 1 Candidatus Endolissoclinum faulkneri 96 1 0 species 1263979 Azospirillum 3633 5 0 67 191 genus 1 species 528244 1 0 786 Azospirillum thiophilum 0 1 192 species Azospirillum brasilense 1081 391 Azospirillum humicireducens species 1226968 1 0 193 species 0 1 1308 Azospirillum lipoferum Thalassospira 478 3 0 3 genus 168934 1 species 220697 0 1 209 Thalassospira xiamenensis Thalassospira sp. CSC3H3 266 0 1 species 2048283 1952 Magnetospirillum 1 13134 genus 0 5 35 no rank 2617991 0 2 899 Magnetospirillum sp. ME-1 476 0 1 species 1639348 species 1663591 0 1 423 Magnetospirillum sp. XM-1 Magnetospirillum magneticum 503 0 1 species 84159 515 Magnetospirillum gryphiswaldense 55518 species 1 0 Haematospirillum 95 2 0 4 genus 1804663 1 species 1549855 0 1 91 Haematospirillum jordaniae 1 1543704 genus 0 2 1 385 Niveispirillum Niveispirillum cyanobacteriorum 384 0 1 species 1612173 232 Pararhodospirillum 1 1612157 genus 10 0 2 1084 species 0 1 222 Pararhodospirillum photometricum Tistrella 546 0 2 3 genus 171436 1 Tistrella mobilis 543 0 1 species 171437 genus 1182780 1 2 0 1 206 Magnetospira 205 0 1 2685734 no rank 205 Magnetospira sp. QH-2 1288970 species 0 1 family 433 1 0 85 34 5974 Acetobacteraceae 1 364409 genus 0 2 9 449 Granulibacter 440 Granulibacter bethesdensis 364410 species 0 1 0 33 3 1 125216 genus Roseomonas 957 431 Roseomonas gilardii 257708 species 1 0 2617492 no rank 1 0 493 493 Roseomonas sp. FDAARGOS_362 species 2018065 0 1 127 1 0 1602345 genus Parasaccharibacter apium 127 0 1 1510841 species Asaia 174 0 2 1 1 genus 91914 173 Asaia bogorensis species 91915 0 1 genus 153497 1 0 1 2 147 Kozakia 153496 species 0 1 146 Kozakia baliensis 3 0 12 1 522 genus Acidiphilium 437 0 1 62140 species Acidiphilium multivorum 207 0 1 524 species Acidiphilium cryptum 218 1 320496 genus 1 0 2 178 Neoasaia 177 Neoasaia chiangmaiensis species 320497 0 1 434 genus 1 0 14 8 1428 Acetobacter 1 0 438 species Acetobacter pasteurianus 418 1633874 species 0 1 103 Acetobacter oryzifermentans 0 1 subgenus 151157 211 1 0 species 435 Acetobacter aceti 211 104102 species 0 1 200 Acetobacter tropicalis 1 0 species 446692 Acetobacter senegalensis 215 0 1 65959 species Acetobacter pomorum 109 158 Acetobacter persici 1076596 species 1 0 1434011 genus 1 23 0 5 1118 Komagataeibacter 1 0 species 1177712 Komagataeibacter medellinensis 141 0 1 33995 species Komagataeibacter europaeus 163 1 0 265960 species Komagataeibacter nataicola 307 0 1 28448 species Komagataeibacter xylinus 484 Gluconacetobacter 334 11 0 2 1 89583 genus 0 1 species 33996 Gluconacetobacter diazotrophicus 323 1 441 genus 0 2 3 540 Gluconobacter 318683 species 0 1 165 Gluconobacter albidus 442 species 0 1 373 Gluconobacter oxydans 1083 no rank 82117 8 0 146 62654 clade 0 2 Candidatus Puniceispirillum 146 0 2 3 1 genus 767891 Candidatus Puniceispirillum marinum 143 0 1 767892 species 14 0 2 1632780 genus 1 Phreatobacter 361 347 Phreatobacter sp. S-12 1868589 species 0 1 1 213485 genus 0 2 4 289 Micavibrio 285 Micavibrio aeruginosavorus 349221 species 0 1 Polymorphum 287 2 0 3 1 991903 genus Polymorphum gilvum 284 0 1 species 991904 2 0 2800059 order 170 2 0 2800061 family 170 0 1 2 1 74317 genus Maricaulis 170 0 1 species 74318 Maricaulis maris 169 1 order 204455 84 0 132 17912 Rhodobacterales family 31989 1 83 0 314 17780 Rhodobacteraceae 1 0 genus 299261 188 188 Tateyamaria omphalii species 299262 0 1 208 1 0 genus 159345 159346 species 0 1 208 Roseibacterium elongatum 140 Marivivens 1759396 genus 1 0 1 2 139 1 0 2622455 no rank 0 1 1920883 species Marivivens sp. JLT3646 139 366 Octadecabacter 1 genus 53945 0 4 2 Octadecabacter temperatus 96 0 1 species 1458307 150 Octadecabacter antarcticus species 1217908 0 1 53946 species 0 1 118 Octadecabacter arcticus 2433 genus 1 3 0 1 311 Roseobacter 0 1 2434 species Roseobacter denitrificans 130 42443 species 1 0 180 Roseobacter litoralis 1 genus 1609958 1 0 2 297 Confluentimicrobium 0 1 no rank 2643318 296 1609966 species 0 1 296 Confluentimicrobium sp. EMB200-NS6 Dinoroseobacter 253 2 0 2 1 309512 genus species 215813 0 1 251 Dinoroseobacter shibae 0 3 1 1 92944 genus Ketogulonicigenium 491 Ketogulonicigenium vulgare 288 1 0 92945 species 0 1 92947 species Ketogulonicigenium robustum 202 genus 188905 1 2 0 6 246 Jannaschia 240 no rank 2645469 0 1 Jannaschia sp. CCS1 240 0 1 290400 species 1 genus 58842 0 4 2 483 Sagittula 479 2624628 no rank 0 1 Sagittula sp. P11 479 0 1 species 2009329 0 5 6 1 genus 875170 Celeribacter 912 231 Celeribacter ethanolicus 1758178 species 0 1 0 1 species 1411902 Celeribacter manganoxidans 245 Celeribacter indicus 322 1 0 species 1208324 Celeribacter marinus 108 0 1 1397108 species 0 1 genus 1579315 95 95 Halocynthiibacter arcticus 1579316 species 0 1 Thioclava 260 2 0 3 1 285107 genus 0 1 species 1915078 Thioclava nitratireducens 257 genus 265 1 9 0 57 2725 Paracoccus species 2065379 0 1 339 Paracoccus sp. CBA4604 147645 species 0 1 418 Paracoccus yeei species 34004 0 1 350 Paracoccus aminovorans 296 Paracoccus contaminans species 1945662 0 1 0 1 1077935 species Paracoccus zhejiangensis 342 0 1 species 34003 Paracoccus aminophilus 238 0 1 species 266 Paracoccus denitrificans 461 224 no rank 246570 0 1 Paracoccus sp. BM15 224 0 1 species 1529068 0 1 245186 genus Loktanella 1 genus 74032 1 0 252 252 Antarctobacter heliothermus 74033 species 1 0 Marinovum 368 0 2 1 1 genus 367771 367 Marinovum algicola species 42444 1 0 1 0 genus 1649279 193 1 0 379347 species Ruegeria mobilis 193 224 0 1 genus 2211641 0 1 245188 species Loktanella vestfoldensis 224 1 genus 34008 0 11 4 895 Rhodovulum Rhodovulum sulfidophilum 423 1 0 35806 species 461 0 2 2631432 no rank 0 1 species 308754 Rhodovulum sp. MB263 253 0 1 species 1564506 Rhodovulum sp. P5 208 263377 genus 2 0 803 species 1229727 0 1 431 Thiobacimonas profunda 372 no rank 2640570 0 1 Yangia sp. CCB-MM3 372 1 0 1792508 species genus 302485 1 0 25 5 1616 Phaeobacter Phaeobacter porticola 131 0 1 species 1844006 444 Phaeobacter piscinae species 1580596 0 1 464 Phaeobacter gallaeciensis 60890 species 0 1 species 221822 1 0 552 Phaeobacter inhibens 181 1 0 74030 genus Roseovarius mucosus 181 0 1 species 215743 1 genus 191028 2 0 2 343 Leisingera 133924 species 1 0 341 Leisingera methylohalidivorans 981 Labrenzia 1 478070 genus 4 0 17 187304 species 0 1 363 Labrenzia aggregata 601 no rank 2648686 2 0 0 1 species 1674922 Labrenzia sp. CP4 338 263 Labrenzia sp. VG12 2021862 species 0 1 Pannonibacter 631 7 0 2 1 227873 genus Pannonibacter phragmitetus 624 0 1 121719 species 383 2 0 58840 no rank Rhodobacteraceae bacterium QY30 252 0 1 2033435 species 1904441 species 1 0 131 Rhodobacteraceae bacterium 527 2 0 97050 genus 211 2625375 no rank 1 0 species 292414 0 1 211 Ruegeria sp. TM1040 species 89184 0 1 316 Ruegeria pomeroyi 95 1284657 genus 0 1 1284658 species 0 1 95 Planktomarina temperata 1536 Rhodobacter 1 genus 1060 25 0 5 Rhodobacter capsulatus 338 1 0 1061 species 0 2 no rank 196779 461 0 1 1850250 species Rhodobacter sp. LPB0142 181 0 1 species 2033869 Rhodobacter sp. CZR27 280 Rhodobacter sphaeroides 712 0 1 species 1063 Defluviimonas 321 2 0 2 1097466 genus 1 319 Defluviimonas alba species 1335048 0 1 161 1 0 119541 genus 0 1 441209 species Rhodobaca barguzinensis 161 3 0 3 1 60136 genus Sulfitobacter 553 249 196795 no rank 0 1 1917485 species 1 0 249 Sulfitobacter sp. AM1-D1 Sulfitobacter pseudonitzschiae 301 0 1 species 1402135 427 0 1 genus 360528 427 Pelagibaca abyssi species 1250539 0 1 4862 Caulobacterales 1 204458 order 20 0 34 Caulobacteraceae 4828 0 19 100 1 family 76892 135 no rank 81440 1 0 135 Caulobacteraceae bacterium OTSz_A_272 1759059 species 1 0 6 0 21 75 genus 1 Caulobacter 2327 0 1 69395 species Caulobacter henricii 243 0 1 69666 species Caulobacter mirabilis 390 783 Caulobacter vibrioides 155892 species 1 0 88688 species 0 1 376 Caulobacter segnis 514 0 1 2648921 no rank Caulobacter sp. K31 514 0 1 species 366602 1 genus 41275 0 7 48 1610 Brevundimonas species 41276 0 1 210 Brevundimonas vesicularis no rank 2622653 3 0 788 Brevundimonas sp. GW460-12-10-14-LB2 254 0 1 species 1827469 1938605 species 0 1 272 Brevundimonas sp. LM2 1532555 species 0 1 262 Brevundimonas sp. DS20 288 Brevundimonas naejangsanensis species 588932 0 1 0 1 74313 species Brevundimonas subvibrioides 276 Phenylobacterium 330 1 0 2 1 genus 20 284016 species 0 1 329 Phenylobacterium zucineum Asticcacaulis 326 7 0 2 1 genus 76890 Asticcacaulis excentricus 319 1 0 species 78587 186 Holosporales 1 order 1921002 2 0 6 Holosporaceae 74 0 1 2 1 family 44746 73 0 1 no rank 204454 86106 species 0 1 73 endosymbiont of Acanthamoeba sp. UWC8 family 2100208 1 0 54 1509243 genus 1 0 54 54 Candidatus Nucleicultrix amoebiphila 1509244 species 0 1 56 Candidatus Paracaedibacteraceae 1 1777752 family 0 1 2 55 genus 1521255 1 0 Candidatus Paracaedibacter acanthamoebae 55 1 0 91604 species 0 97 82 1 order 204457 Sphingomonadales 15282 11879 Sphingomonadaceae family 41297 1 0 170 59 2 0 3 1 541 genus Zymomonas 315 species 542 0 1 312 Zymomonas mobilis 165696 genus 1 5 0 18 1130 Novosphingobium no rank 2644732 1 0 284 species 702113 0 1 284 Novosphingobium sp. PP1Y Novosphingobium resinovorum 330 0 1 158500 species 48935 species 0 1 224 Novosphingobium aromaticivorans Novosphingobium pentaromativorans 274 0 1 species 205844 genus 2709685 0 1 163 Sphingorhabdus flavimaris 163 0 1 266812 species 0 50 10 genus 165697 1 Sphingopyxis 1968 species 117207 1 0 185 Sphingopyxis alaskensis 0 4 no rank 2614943 651 species 292913 0 1 146 Sphingopyxis sp. 113P3 Sphingopyxis sp. LPB0140 86 0 1 species 1913578 Sphingopyxis sp. QXT-31 241 0 1 species 1357916 species 1866325 1 0 178 Sphingopyxis sp. MG 0 1 species 33052 Sphingopyxis terrae 194 0 1 species 33050 Sphingopyxis macrogoltabida 423 0 1 267128 species Sphingopyxis granuli 273 1515612 species 0 1 192 Sphingopyxis fribergensis 2 0 2 genus 72173 1 Citromicrobium 248 no rank 2630544 0 1 246 0 1 species 1634516 Citromicrobium sp. JL477 246 1 genus 13687 0 15 70 3532 Sphingomonas 0 1 species 1609977 Sphingomonas hengshuiensis 215 Sphingomonas koreensis 245 0 1 species 93064 Sphingomonas panacis 214 0 1 species 1560345 397260 species 0 1 334 Sphingomonas sanxanigenens 160791 species 1 247 0 2 574 Sphingomonas wittichii strain 1283312 0 1 327 Sphingomonas sp. DC-6 0 1 species 1549858 Sphingomonas taxi 239 0 6 196159 no rank 1426 species 745310 1 0 299 Sphingomonas sp. MM-1 0 1 1030157 species Sphingomonas sp. KC8 210 1390395 species 0 1 246 Sphingomonas sp. LK11 1 0 species 1938607 Sphingomonas sp. LM7 206 Sphingomonas sp. NIC1 249 0 1 species 1961362 216 Sphingomonas sp. Cra20 1327635 species 0 1 215 Sphingomonas melonis 152682 species 0 1 348 Sphingorhabdus 1 genus 1434046 0 10 3 2614947 no rank 0 2 338 0 1 1806885 species Sphingorhabdus sp. M41 198 Sphingorhabdus sp. YGSMI21 140 0 1 species 2077182 248 Blastomonas genus 150203 1 8 0 2 0 1 no rank 2626550 240 species 1842535 0 1 240 Blastomonas sp. RAC04 184 0 1 2685927 genus 184 Sphingomonas sp. JJ-A5 species 1921510 0 1 Sphingobium 3331 0 15 91 1 165695 genus species 46429 0 1 258 Sphingobium chlorophenolicum 1326 2611147 no rank 6 0 Sphingobium sp. TKS 275 0 1 species 1315974 145 Sphingobium sp. EP60837 species 1855519 0 1 259 Sphingobium sp. YBL2 species 484429 0 1 species 1843368 0 1 220 Sphingobium sp. RAC03 Sphingobium sp. MI1205 157 0 1 407020 species 0 1 627192 species Sphingobium sp. SYK-6 270 Sphingobium yanoikuyae 277 1 0 13690 species 303 Sphingobium hydrophobicum 1673076 species 0 1 0 1 species 1332080 Sphingobium baderi 170 species 120107 1 0 228 Sphingobium cloacae Sphingobium indicum 283 0 1 species 332055 Sphingobium japonicum 192 1 0 332056 species species 76947 0 1 203 Sphingobium herbicidovorans 1649486 genus 1 6 0 2 242 Rhizorhabdus species 1850238 0 1 236 Rhizorhabdus dicambivorans 1 335929 family 0 22 76 3306 Erythrobacteraceae 213 2800682 genus 0 1 213 Altererythrobacter namhicola species 645517 0 1 2 0 2800681 genus 403 species 502682 0 1 215 Erythrobacter gangjinensis 1 0 species 1648404 Erythrobacter atlanticus 188 247 2800686 genus 0 2 0 1 692370 species Altererythrobacter dongtanensis 139 Altererythrobacter mangrovi 108 0 1 species 1982042 genus 1295327 1 50 0 3 479 Croceicoccus Croceicoccus marinus 255 0 1 450378 species 174 Croceicoccus naphthovorans species 1348774 0 1 0 2 1855416 genus 323 Erythrobacter flavus 169 0 1 species 192812 0 1 species 266951 Erythrobacter seohaensis 154 929 0 6 no rank 2800788 1 genus 1041 0 46 3 484 Erythrobacter 0 1 39960 species Erythrobacter litoralis 254 Porphyrobacter neustonensis 184 0 1 species 1112 3 0 45 1 genus 1111 Porphyrobacter 445 400 2 0 no rank 2683265 species 2023229 0 1 203 Porphyrobacter HT-58-2 197 Porphyrobacter sp. LM 6 1896196 species 0 1 136 genus 2800685 1 0 0 1 species 543877 Altererythrobacter marensis 136 1 genus 361177 4 0 56 500 Altererythrobacter species 476157 0 1 102 Altererythrobacter ishigakiensis 196 Altererythrobacter atlanticus 1267766 species 0 1 146 Altererythrobacter epoxidivorans species 361183 1 0 43291 Rhizobiales order 356 1 208 0 497 0 2 family 119043 150 150 Parvibaculum 1 genus 256616 0 6 2 144 Parvibaculum lavamentivorans species 256618 1 0 296 Beijerinckiaceae 1 45404 family 5 0 4 0 3 2 genus 532 1 Beijerinckia 162 Beijerinckia indica 159 0 1 species 533 130 Methylocella 1 genus 120652 0 2 2 199596 species 0 1 128 Methylocella silvestris Bartonellaceae 1325 0 18 6 family 772 1 1 773 genus 0 17 15 1319 Bartonella Bartonella grahamii 70 0 1 species 33045 Bartonella henselae 75 0 1 38323 species 1 0 85701 species Bartonella tribocorum 91 1 0 species 33047 Bartonella vinsonii 43 56426 species 0 1 90 Bartonella clarridgeiae 53 Bartonella ancashensis 1318743 species 0 1 Bartonella australis 41 0 1 species 388640 Bartonella apis 318 0 1 species 1686310 Bartonella quintana 77 0 1 species 803 6 0 no rank 2645622 324 46 Bartonella sp. Raccoon60 1933912 species 0 1 Bartonella sp. JB63 56 0 1 species 1933907 56 Bartonella sp. JB15 species 1933906 1 0 Bartonella sp. A1379B 39 0 1 species 1933910 species 1933904 0 1 69 Bartonella sp. WD16.2 species 515256 1 0 58 Bartonella sp. 1-1C 122 Bartonella bacilliformis species 774 0 1 14854 Rhizobiaceae 82115 family 1 0 52 151 1 genus 34019 6 0 2 270 Liberibacter 34021 species 0 1 29 Candidatus Liberibacter asiaticus 69 Candidatus Liberibacter solanacearum 556287 species 0 1 55 Candidatus Liberibacter africanus species 34020 0 1 1273132 species 0 1 69 Liberibacter crescens 46 Candidatus Liberibacter americanus species 309868 0 1 33 0 no rank 227290 10716 Rhizobium 7470 521 0 24 genus 379 1 species 29449 0 1 802 Rhizobium etli 307 Rhizobium tropici 398 species 0 1 3238 0 18 no rank 2613769 0 1 1703967 species Rhizobium sp. N741 1 161 Rhizobium sp. IE4771 species 1301032 1 0 Rhizobium sp. IRBG74 284 0 1 424182 species 282 Rhizobium sp. Y9 species 1914541 0 1 Rhizobium sp. NXC24 280 1 0 2048897 species species 2020312 0 1 232 Rhizobium sp. CIAT894 Rhizobium sp. N1314 34 0 1 species 1703961 38 Rhizobium sp. TAL182 2020313 species 0 1 0 1 species 1125847 Rhizobium sp. NT-26 216 Rhizobium sp. ACO-34A 371 0 1 1571470 species species 1703966 0 1 34 Rhizobium sp. N731 0 1 1869170 species Rhizobium sp. S41 286 4 Rhizobium sp. N621 species 1703964 0 1 Rhizobium sp. NXC14 165 1 0 species 1981173 261 Rhizobium sp. N324 1703969 species 0 1 2028343 species 1 0 342 Rhizobium sp. 10195 0 1 1703965 species Rhizobium sp. N6212 4 Rhizobium sp. Kim5 243 0 1 species 2020311 Rhizobium leguminosarum 1687 0 1 species 384 Rhizobium phaseoli 516 0 1 396 species 56730 species 0 1 399 Rhizobium gallicum Agrobacterium 2673 7 0 54 genus 357 1 no rank 2632611 2 0 467 268 Agrobacterium sp. H13-3 species 861208 0 1 species 1842536 0 1 199 Agrobacterium sp. RAC06 0 1 species 359 Agrobacterium rhizogenes 371 373 species 0 1 291 Agrobacterium vitis 0 2 1183400 species group 1490 0 1 species 1176649 Agrobacterium fabrum 344 1 0 358 species Agrobacterium tumefaciens 1146 573 Neorhizobium 1 1525371 genus 2 0 4 569 Neorhizobium galegae 399 species 1 0 502 Shinella genus 323620 1 2 0 2 500 0 1 2643062 no rank 0 1 879274 species Shinella sp. HZN7 500 3215 227292 no rank 10 0 537 Ensifer genus 106591 1 1 0 3 1 0 species 716925 Ensifer sojae 232 species 106592 0 1 304 Ensifer adhaerens Sinorhizobium 2678 0 7 66 1 genus 28105 353 Sinorhizobium americanum 194963 species 0 1 680 1 0 663276 species group 380 species 0 1 680 Sinorhizobium fredii Sinorhizobium medicae 259 0 1 110321 species no rank 2613772 2 0 648 Sinorhizobium sp. RAC02 377 0 1 species 1842534 Sinorhizobium sp. CCBAU 05631 271 0 1 794846 species 1 0 species 382 Sinorhizobium meliloti 672 6 0 3 family 31993 1 Methylocystaceae 564 1 133 genus 17 0 3 312 Methylocystis 1 0 2625913 no rank 154 species 187303 0 1 154 Methylocystis sp. SC2 0 1 species 655015 Methylocystis bryophila 141 249 Methylosinus 1 425 genus 0 2 6 426 species 0 1 243 Methylosinus trichosporium 31 0 19 1 family 45401 Hyphomicrobiaceae 2894 Devosia 951 0 4 20 1 genus 46913 196773 no rank 3 0 931 0 1 species 2083786 Devosia sp. I507 219 1 0 1643450 species Devosia sp. H5989 339 species 1736675 1 0 373 Devosia sp. A16 1 genus 1068 0 2 9 185 Rhodomicrobium 1 0 species 1069 Rhodomicrobium vannielii 176 1 genus 29407 2 0 9 339 Rhodoplanes 1 0 2619116 no rank 330 species 674703 0 1 330 Rhodoplanes sp. Z2-YC6860 186 Pelagibacterium 1 1082930 genus 4 0 2 Pelagibacterium halotolerans 182 1 0 531813 species Hyphomicrobium 820 0 8 4 1 genus 81 272 2619925 no rank 0 1 species 717785 0 1 272 Hyphomicrobium sp. MC1 1427356 species 0 1 311 Hyphomicrobium nitrativorans Hyphomicrobium denitrificans 229 0 1 53399 species Filomicrobium 77 0 1 2 genus 119044 1 0 1 1608628 species Candidatus Filomicrobium marinum 76 1 59282 genus 0 14 2 305 Blastochloris 291 Blastochloris viridis 1079 species 0 1 family 41294 1 0 26 122 7879 Bradyrhizobiaceae Bosea 1277 5 0 20 genus 85413 1 no rank 2653178 3 0 907 0 1 species 1842539 Bosea sp. RAC05 324 Bosea sp. AS-1 307 0 1 species 2015316 0 1 1792307 species Bosea sp. PAMC 26642 276 Bosea vaviloviae 350 1 0 species 1526658 Oligotropha 212 2 0 2 1 genus 40136 0 1 species 40137 Oligotropha carboxidovorans 210 1 1649510 genus 5 0 2 149 Variibacter 144 Variibacter gotjawalensis 1333996 species 0 1 1 genus 911 3 0 5 320 Nitrobacter Nitrobacter winogradskyi 147 0 1 species 913 0 1 912 species Nitrobacter hamburgensis 168 1 374 genus 0 11 96 3863 Bradyrhizobium Bradyrhizobium diazoefficiens 502 1 0 1355477 species 0 1 species 1274631 Bradyrhizobium icense 261 6 0 2631580 no rank 2144 1 0 115808 species Bradyrhizobium sp. ORS 285 328 0 1 2057741 species Bradyrhizobium sp. SK17 346 376 species 0 1 353 Bradyrhizobium sp. species 1223566 0 1 346 Bradyrhizobium sp. CCGE-LA001 354 Bradyrhizobium sp. BTAi1 species 288000 0 1 0 1 species 114615 Bradyrhizobium sp. ORS 278 417 Bradyrhizobium oligotrophicum 378 0 1 44255 species 0 1 375 species Bradyrhizobium japonicum 482 1936 Rhodopseudomonas 1073 genus 1 0 2 20 species 1076 1 0 1916 Rhodopseudomonas palustris 17 0 7 1 family 335928 Xanthobacteraceae 1303 Xanthobacter 439 12 0 2 1 genus 279 0 1 280 species Xanthobacter autotrophicus 427 Starkeya 391 2 0 5 1 152053 genus 0 1 921 species Starkeya novella 386 456 Azorhizobium 6 genus 1 0 11 2 1 0 species 7 Azorhizobium caulinodans 445 Aurantimonadaceae 1459 16 0 7 1 family 255475 Aureimonas 267 0 1 2 414371 genus 1 no rank 2615206 1 0 266 1349819 species 0 1 266 Aureimonas sp. AU20 4 0 26 1 293088 genus Martelella 1176 no rank 2629616 0 1 372 Martelella sp. AD-3 372 0 1 686597 species 293089 species 0 1 382 Martelella mediterranea 0 1 1486262 species Martelella endophytica 396 Chelatococcaceae 657 0 4 2 2036754 family 1 0 3 25 1 28209 genus Chelatococcus 655 258 Chelatococcus daeguensis 444444 species 0 1 372 0 1 no rank 2638111 372 Chelatococcus sp. CO-6 1702325 species 0 1 732 0 6 no rank 119042 Pseudorhodoplanes 201 0 3 2 1 1734920 genus Pseudorhodoplanes sinuspersici 198 0 1 species 1235591 321 Hartmannibacter 1 genus 1572860 5 0 2 316 Hartmannibacter diazotrophicus 1482074 species 0 1 Methyloceanibacter 210 2 0 4 genus 1484898 1 1384459 species 0 1 206 Methyloceanibacter caenitepidi 1796 Brucellaceae 118882 family 1 0 11 20 1 528 genus 5 0 10 904 Ochrobactrum Ochrobactrum pseudogrignonense 235 0 1 419475 species 233 Ochrobactrum pituitosum species 571256 1 0 species 271865 0 1 214 Ochrobactrum sp. A44 212 Ochrobactrum anthropi 529 species 0 1 881 Brucella 1 genus 234 0 351 14 14 Brucella microti 444163 species 1 0 30 Brucella canis species 36855 0 1 14 Brucella ovis 236 species 0 1 242 2632610 no rank 0 4 Brucella sp. 2002734562 16 1 0 1891098 species 0 1 1885919 species Brucella sp. 141012304 116 species 1149952 0 1 56 Brucella sp. 09RB8471 54 Brucella sp. 09RB8910 species 1844051 0 1 1 0 species 120577 Brucella ceti 48 0 1 235 species Brucella abortus 31 71 Brucella vulpis 981386 species 1 0 species 120576 0 1 42 Brucella pinnipedialis Brucella melitensis 19 1 0 29459 species 19 Brucella suis 29461 species 0 1 4172 Phyllobacteriaceae 69277 family 1 20 0 45 28100 genus 1 2 0 7 225 Phyllobacterium 0 1 species 1867719 Phyllobacterium zundukense 218 449972 genus 1 1 0 2 335 Chelativorans 1 0 no rank 2643807 334 0 1 species 266779 Chelativorans sp. BNC1 334 Aminobacter 332 1 0 2 genus 31988 1 species 83263 0 1 331 Aminobacter aminovorans 78 0 9 1 68287 genus Mesorhizobium 2806 381 species 0 1 355 Mesorhizobium loti Mesorhizobium japonicum 353 0 1 species 2066070 Mesorhizobium sp. B7 252 0 1 species 1670800 593909 species 1 0 294 Mesorhizobium opportunistum Mesorhizobium australicum 342 1 0 536018 species 495 Mesorhizobium ciceri species 39645 0 1 336 325217 no rank 1 0 Mesorhizobium sp. WSM1497 336 0 1 species 278153 71433 species 0 1 301 Mesorhizobium amorphae Hoeflea 241 0 1 2 1 274591 genus 240 1 0 2614931 no rank 240 Hoeflea sp. IMCC20628 species 1620421 1 0 Nitratireductor 188 7 0 2 245876 genus 1 0 1 species 472175 Nitratireductor basaltis 181 4713 Methylobacteriaceae 119045 family 1 0 25 15 Microvirga 377 2 0 7 genus 186650 1 0 1 1882682 species Microvirga ossetica 370 0 150 9 1 genus 407 Methylobacterium 2706 0 1 species 31998 Methylobacterium radiotolerans 321 0 3 no rank 2615210 942 925818 species 1 0 281 Methylobacterium sp. AMS5 species 426117 0 1 341 Methylobacterium sp. 4-46 320 Methylobacterium sp. C1 species 1479019 1 0 415 Methylobacterium aquaticum 270351 species 0 1 Methylobacterium phyllosphaerae 249 1 0 species 418223 Methylobacterium oryzae 271 1 0 334852 species species 114616 0 1 358 Methylobacterium nodulans 1605 2282523 genus 0 3 Methylobacterium populi 561 0 1 species 223967 0 1 species 408 Methylobacterium extorquens 828 0 1 species 29429 Methylobacterium zatmanii 216 97 0 1 order 255473 0 1 255474 family 97 97 0 1 genus 208215 Parvularcula bermudensis 97 0 1 species 208216 Magnetococcales 163 0 6 3 1191478 order 1 157 Magnetococcaceae 1191479 family 1 0 2 3 154 162171 genus 1 0 154 Magnetococcus marinus 1124597 species 0 1 453 0 5 order 2800060 69657 family 1 5 0 1 453 Hyphomonadaceae 2723 genus 0 1 138 Hirschia baltica 138 0 1 species 2724 genus 85 1 3 0 7 314 Hyphomonas 0 1 2630699 no rank 111 Hyphomonas sp. Mor2 111 0 1 1906738 species 0 1 species 81032 Hyphomonas neptunium 196 0 50 10 order 766 1 Rickettsiales 2681 1 0 family 1328881 48 411566 genus 1 0 48 Candidatus Midichloria mitochondrii 48 0 1 species 234827 0 3 21 942 family 1 Anaplasmataceae 1054 56 768 genus 3 0 0 1 770 species Anaplasma marginale 29 16 0 1 106179 species group 16 Anaplasma phagocytophilum species 948 0 1 11 Anaplasma centrale 769 species 0 1 478 Ehrlichia 1 943 genus 0 8 6 4 0 species group 106178 396 0 1 35795 species Ehrlichia muris 65 88 Ehrlichia chaffeensis species 945 0 1 species 779 0 1 137 Ehrlichia ruminantium 106 Ehrlichia canis species 944 0 1 0 1 106181 no rank 74 0 1 species 391036 Ehrlichia sp. HF 74 0 8 tribe 952 408 408 Wolbachia 1 953 genus 0 8 9 2640676 no rank 7 0 399 49 Wolbachia endosymbiont of Drosophila melanogaster 163164 species 1 0 35 Wolbachia endosymbiont of Onchocerca volvulus species 77551 1 0 54 Wolbachia sp. wRi 66084 species 0 1 1 0 species 100901 Wolbachia endosymbiont of Onchocerca ochengi 33 Wolbachia endosymbiont of Cimex lectularius 90 0 1 246273 species Wolbachia endosymbiont of Drosophila simulans 89 0 1 species 77038 49 Wolbachia endosymbiont of Brugia malayi species 80849 0 1 3 0 33993 genus 109 species 951 0 1 29 Neorickettsia sennetsu Neorickettsia helminthoeca 48 0 1 species 33994 1 0 species 950 Neorickettsia risticii 32 136 1699067 no rank 0 1 species 1528098 0 1 136 Rickettsiales bacterium Ac37b 1433 Rickettsiaceae family 775 1 0 6 26 73 0 1 genus 2115980 73 Candidatus Phycorickettsia trachydisci species 2115978 1 0 33988 tribe 0 24 1354 1 780 genus 0 23 112 1209 Rickettsia 0 2 species group 114292 230 Rickettsia typhi 114 0 1 785 species 0 1 species 782 Rickettsia prowazekii 116 193 species group 1129742 2 0 33990 species 0 1 107 Rickettsia bellii 86 Rickettsia canadensis species 788 0 1 no rank 114295 0 1 98 species 337479 0 1 98 Rickettsia endosymbiont of Bemisia tabaci 576 17 0 species group 114277 species 226665 0 1 13 Rickettsia heilongjiangensis 12 Rickettsia slovaca 35794 species 0 1 35792 species 0 1 16 Rickettsia parkeri 787 species 0 1 79 Rickettsia australis 781 species 1 0 9 Rickettsia conorii 59 Rickettsia monacensis 109232 species 0 1 28 Rickettsia massiliae 35791 species 0 1 0 1 783 species Rickettsia rickettsii 22 1 0 species 47589 Rickettsia peacockii 32 Rickettsia akari 44 1 0 786 species Rickettsia felis 93 0 1 42862 species 1 0 species 33991 Rickettsia montanensis 25 1 0 species 35790 Rickettsia japonica 12 0 1 33989 species Rickettsia amblyommatis 53 42 Rickettsia rhipicephali species 33992 1 0 19 Rickettsia africae species 35788 0 1 1105106 species 1 0 18 Rickettsia philipii 145 genus 69474 0 1 0 1 784 species Orientia tsutsugamushi 145 1 0 8 order 54526 1 Pelagibacterales 641 0 1 genus 2045213 144 1 0 1925548 species Candidatus Fonsibacter ubiquis 144 496 Pelagibacteraceae 1 1655514 family 6 0 3 0 3 1 1 198251 genus Candidatus Pelagibacter 210 2647897 no rank 0 1 79 0 1 species 1002672 Candidatus Pelagibacter sp. IMCC9063 79 130 Candidatus Pelagibacter ubique 198252 species 1 0 283 1655516 no rank 0 2 0 1 species 744985 alpha proteobacterium HIMB59 132 species 859653 0 1 151 alpha proteobacterium HIMB5 0 191 subphylum 68525 51835 Deltaproteobacteria 35265 123 0 69 28221 class 1 0 97 24 213115 order 1 Desulfovibrionales 11046 0 1 family 213117 174 174 1 0 genus 45662 45663 species 1 0 174 Desulfohalobium retbaense 0 52 18 family 194924 1 Desulfovibrionaceae 9808 1436 Pseudodesulfovibrio genus 2035811 1 0 4 7 1716143 species 0 1 639 Pseudodesulfovibrio indicus 0 1 species 182210 Pseudodesulfovibrio aespoeensis 525 265 Pseudodesulfovibrio profundus species 57320 0 1 2794998 genus 0 1 361 1 0 species 880 Desulfovibrio salexigens 361 Lawsonia 182 2 0 1 genus 41707 1 Lawsonia intracellularis 181 0 1 29546 species 7302 Desulfovibrio 1 genus 872 9 0 65 Desulfovibrio vulgaris 1544 0 1 881 species 1 0 184917 species Desulfovibrio magneticus 797 1267 Desulfovibrio piger 901 species 0 1 Desulfovibrio alaskensis 407 1 0 58180 species Desulfovibrio fairfieldensis 1388 0 1 44742 species 1 0 2593640 no rank 375 375 Desulfovibrio sp. G11 631220 species 0 1 0 1 species 1725232 Candidatus Desulfovibrio trichonymphae 210 Desulfovibrio desulfuricans 1249 0 1 species 876 475 1 0 genus 2582840 0 1 species 873 Desulfovibrio africanus 475 Desulfomicrobiaceae 967 0 25 4 family 213116 1 0 7 3 1 genus 898 Desulfomicrobium 942 479 Desulfomicrobium orale 132132 species 0 1 456 Desulfomicrobium baculatum species 899 0 1 Desulfuromonadales 7179 93 0 24 1 order 69541 Desulfuromonadaceae 2227 9 0 29 213421 family 1 genus 18 1 5 0 22 1302 Pelobacter 1 0 29542 species Pelobacter acetylenicus 327 Pelobacter carbinolicus 232 0 1 species 19 Pelobacter propionicus 484 1 0 species 29543 237 2620299 no rank 1 0 237 Pelobacter sp. SFB93 1842532 species 1 0 Desulfuromonas 896 0 3 3 1 890 genus no rank 2614637 0 1 465 0 1 1823759 species Desulfuromonas sp. DDH964 465 0 1 species 1603606 Desulfuromonas soudanensis 428 4859 Geobacteraceae family 213422 1 14 0 30 342 Geoalkalibacter 1 genus 392332 3 0 2 0 1 483547 species Geoalkalibacter subterraneus 339 4487 Geobacter 1 28231 genus 0 65 11 1 0 species 1340425 Geobacter anodireducens 493 225194 species 0 1 460 Geobacter bemidjiensis 1 0 28232 species Geobacter metallireducens 424 514 Geobacter lovleyi 313985 species 0 1 species 1203471 1 0 317 Geobacter daltonii 35554 species 0 1 444 Geobacter sulfurreducens 1046 2627627 no rank 2 0 0 1 443144 species Geobacter sp. M21 413 Geobacter sp. M18 633 1 0 species 443143 305 Geobacter uraniireducens 351604 species 0 1 0 1 species 345632 Geobacter pickeringii 419 1 213462 order 0 5 9 809 Syntrophobacterales 0 3 6 1 213465 family Syntrophobacteraceae 256 Syntrophobacter 250 0 1 2 1 29526 genus 249 Syntrophobacter fumaroxidans species 119484 0 1 548 Syntrophaceae family 213468 1 0 5 2 166 60892 genus 1 0 60893 species 1 0 166 Desulfobacca acetoxidans 120 genus 2357 1 0 0 1 species 2358 Desulfomonile tiedjei 120 43773 genus 1 2 0 4 260 Syntrophus Syntrophus aciditrophicus 256 0 1 species 316277 0 120 38 order 29 1 Myxococcales 12467 9842 26 0 80811 suborder 4672 Myxococcaceae 31 family 1 33 0 9 120 0 5 1 32 genus Myxococcus 3102 83455 species 0 1 547 Myxococcus stipitatus 0 1 1297742 species Myxococcus hansupus 594 0 1 34 species Myxococcus xanthus 560 33 species 0 1 1281 Myxococcus fulvus 1537 Corallococcus genus 83461 1 0 26 3 0 1 species 184914 Corallococcus coralloides 893 35 species 0 1 618 Myxococcus macrosporus 1524215 family 1 0 5 17 2044 Anaeromyxobacteraceae 2027 Anaeromyxobacter 161492 genus 1 30 0 4 species 161493 0 1 980 Anaeromyxobacter dehalogenans 1017 no rank 2620896 0 2 0 1 447217 species Anaeromyxobacter sp. K 568 449 Anaeromyxobacter sp. Fw109-5 species 404589 0 1 Archangiaceae 2811 67 0 9 family 39 1 Archangium 797 6 0 2 1 genus 47 Archangium gephyra 791 1 0 species 48 42 genus 1 0 2 8 687 Cystobacter 43 species 0 1 679 Cystobacter fuscus Melittangium 648 2 0 7 genus 44 1 83453 species 1 0 641 Melittangium boletus 612 Stigmatella 1 genus 40 0 2 7 species 41 0 1 605 Stigmatella aurantiaca family 1524213 1 5 0 3 315 Vulgatibacteraceae Vulgatibacter 310 0 2 4 genus 1524214 1 Vulgatibacter incomptus 306 0 1 1391653 species 588 suborder 224462 0 3 Kofleriaceae 588 3 0 3 224464 family 1 585 Haliangium 1 genus 162027 2 0 13 572 Haliangium ochraceum 80816 species 0 1 1917 8 0 suborder 80812 376 Sandaracinaceae 1 family 1055686 3 0 1 9 0 2 genus 1055688 1 Sandaracinus 375 366 Sandaracinus amylolyticus 927083 species 0 1 1541 Polyangiaceae 1 49 family 0 11 5 39643 genus 1 2 0 29 1177 Sorangium 1148 Sorangium cellulosum 56 species 0 1 2 0 2 genus 50 1 Chondromyces 353 Chondromyces crocatus 351 0 1 species 52 312 Desulfurellales 1 213113 order 0 13 5 117942 family 0 4 299 2 0 1 1 genus 33001 Desulfurella 153 0 1 33002 species Desulfurella acetivorans 152 1 genus 84404 0 2 1 146 Hippea Hippea maritima 145 0 1 species 84405 213118 order 1 19 0 18 2793 Desulfobacterales Desulfobulbaceae 1191 0 6 8 1 213121 family 222 0 1 genus 53318 Desulfocapsa sulfexigens 222 0 1 65555 species 2 0 2 genus 427922 1 Desulfurivibrio 382 380 Desulfurivibrio alkaliphilus species 427923 1 0 443 Desulfobulbus 893 genus 1 2 0 7 1986146 species 1 0 436 Desulfobulbus sp. ORNL Desulfotalea 138 2 0 2 1 109168 genus species 84980 0 1 136 Desulfotalea psychrophila 1583 Desulfobacteraceae 213119 family 1 0 12 9 0 2 2 1 28222 genus Desulfobacula 346 Desulfobacula toluolica 344 1 0 28223 species genus 896 1 0 3 3 649 Desulfococcus 312 Desulfococcus multivorans 897 species 0 1 334 Desulfococcus oleovorans 181663 species 0 1 237 1 0 2295 genus 2296 species 0 1 237 Desulfobacterium autotrophicum 218207 genus 1 0 1 2 339 Desulfatibacillum 0 1 259354 species Desulfatibacillum alkenivorans 338 0 4 9 order 453227 1 Desulfarculales 590 Desulfarculaceae 581 0 3 7 1 453228 family 574 Desulfarculus genus 453229 1 2 0 5 Desulfarculus baarsii 569 0 1 453230 species 1 29547 class 0 49 68 16570 Epsilonproteobacteria 333 Nautiliales 1 order 235899 0 1 4 1 0 family 2795691 131 genus 269258 1 0 131 131 no rank 2624044 1 0 387092 species 0 1 131 Nitratiruptor sp. SB155-2 224467 family 2 0 201 1 191291 genus 0 8 2 201 Nautilia 0 1 244787 species Nautilia profundicola 193 0 633 63 1 213849 order Campylobacterales 16188 0 1051 41 1 72294 family Campylobacteraceae 13289 1 genus 57665 0 9 14 953 Sulfurospirillum 103 Sulfurospirillum cavolei species 366522 1 0 65553 species 0 1 116 Sulfurospirillum deleyianum species 66821 0 1 75 Sulfurospirillum multivorans 449 2618290 no rank 3 0 species 1986224 0 1 134 Sulfurospirillum sp. SL2-1 1 0 species 220622 Sulfurospirillum sp. JPD-1 169 Sulfurospirillum sp. UCH001 146 0 1 species 1581011 Sulfurospirillum barnesii 113 0 1 44674 species species 194424 0 1 83 Sulfurospirillum halorespirans 2321108 no rank 0 5 1707 0 1 no rank 2321207 395 species 944547 0 1 395 Arcobacter sp. L Arcobacter 846 0 2 3 1 genus 28196 527 Arcobacter butzleri species 28197 0 1 317 Arcobacter nitrofigilis species 28199 0 1 466 genus 2321187 0 1 Arcobacter sp. LPB0137 466 0 1 species 1850254 26 0 135 194 genus 1 Campylobacter 9578 Campylobacter insulaenigrae 151 0 1 260714 species Campylobacter curvus 110 1 0 200 species Campylobacter avium 95 0 1 522485 species 308 Campylobacter lanienae species 75658 0 1 1 0 1244531 species Campylobacter iguaniorum 138 1965231 species 1 0 270 Campylobacter pinnipediorum 0 1 28898 species Campylobacter helveticus 75 Campylobacter hominis 138 1 0 species 76517 206 Campylobacter peloridis species 488546 0 1 Campylobacter subantarcticus 168 0 1 species 497724 0 4 2593542 no rank 452 Campylobacter sp. RM12175 70 0 1 species 1660076 1 0 1500960 species Campylobacter sp. RM16704 176 1660074 species 1 0 82 Campylobacter sp. RM8964 0 1 species 1660073 Campylobacter sp. RM6137 124 species 827 0 1 226 Campylobacter ureolyticus 149 Campylobacter volucris 1031542 species 0 1 374106 species 1 0 159 Campylobacter cuniculorum 0 1 species 199 Campylobacter concisus 201 0 1 species 196 Campylobacter fetus 262 species 195 0 1 4191 Campylobacter coli 0 1 species 197 Campylobacter jejuni 1006 Campylobacter sputorum 333 0 1 species 206 502 Campylobacter lari 201 species 0 1 824 species 1 0 120 Campylobacter gracilis 198 species 0 1 183 Campylobacter hyointestinalis 458 0 3 family 2771472 genus 269260 1 0 158 Nitratifractor salsuginis 158 0 1 species 269261 265570 genus 2 0 300 206403 species 0 1 134 Sulfurovum lithotrophicum 0 1 no rank 2646778 166 species 387093 0 1 166 Sulfurovum sp. NBC37-1 4 0 2771471 family 365 202746 genus 2 0 249 species 202747 1 0 117 Sulfurimonas autotrophica 132 Sulfurimonas denitrificans species 39766 0 1 1 genus 286130 0 2 2 116 Sulfuricurvum 148813 species 1 0 114 Sulfuricurvum kujiense 1443 Helicobacteraceae family 72293 1 2 0 14 68 843 genus 0 1 species 844 0 1 68 Wolinella succinogenes Helicobacter 1373 10 0 12 1 genus 209 Helicobacter acinonychis 30 0 1 212 species 32025 species 0 1 111 Helicobacter hepaticus 42 2593540 no rank 0 1 species 222136 0 1 42 Helicobacter sp. MIT 01-6242 0 1 species 138563 Helicobacter cetorum 120 Helicobacter mustelae 62 0 1 217 species Helicobacter bilis 113 0 1 species 37372 74 Helicobacter typhlonius species 76936 0 1 110 Helicobacter himalayensis species 1591088 0 1 0 1 species 214 Helicobacter felis 39 0 1 210 species Helicobacter pylori 495 213 species 0 1 167 Helicobacter cinaedi 169459 Gammaproteobacteria 1236 class 1 0 409 864 1 order 135622 0 102 45 9913 Alteromonadales 267889 family 0 8 766 676 Colwellia 28228 genus 1 0 12 6 Colwellia beringensis 135 0 1 species 1967665 28229 species 0 1 118 Colwellia psychrerythraea 411 3 0 no rank 196834 0 1 species 1816218 Colwellia sp. PAMC 20917 125 Colwellia sp. PAMC 21821 138 1 0 1816219 species 0 1 species 58049 Colwellia sp. MT41 148 Thalassotalea 90 0 2 1 1518149 genus 1 89 Thalassotalea crassostreae 1763536 species 0 1 Idiomarinaceae 255 6 0 2 267893 family 1 253 Idiomarina 1 135575 genus 5 0 1 156 0 2 2614829 no rank 1 0 2055892 species Idiomarina sp. X4 52 1 0 species 2100422 Idiomarina sp. OT37-5b 104 species 135577 0 1 48 Idiomarina loihiensis 0 1 species 1096243 Idiomarina piscisalsi 48 267894 family 3 0 258 1 0 3 1 genus 67572 Psychromonas 258 0 1 2614957 no rank 97 314282 species 0 1 97 Psychromonas sp. CNPT3 Psychromonas ingrahamii 160 1 0 species 357794 1 family 267890 0 14 25 2544 Shewanellaceae Shewanella 2530 0 24 75 22 genus 1 0 1 70864 species Shewanella pealeana 104 518 0 6 no rank 196818 Shewanella sp. ANA-3 98 0 1 94122 species 0 1 60481 species Shewanella sp. MR-7 45 Shewanella sp. WE21 107 0 1 2029986 species Shewanella sp. MR-4 79 1 0 60480 species Shewanella sp. Pdp11 93 0 1 2059264 species 0 1 species 351745 Shewanella sp. W3-18-1 96 Shewanella sediminis 123 1 0 species 271097 species 271098 0 1 138 Shewanella halifaxensis 70 Shewanella bicestrii species 2018305 0 1 170 Shewanella amazonensis 60478 species 1 0 101 Shewanella marisflavi 260364 species 0 1 56812 species 0 1 91 Shewanella frigidimarina 0 1 60961 species Shewanella woodyi 94 122 Shewanella piezotolerans 404011 species 0 1 62322 species 0 1 193 Shewanella baltica 150 Shewanella loihica species 359303 1 0 1 0 species 60217 Shewanella violacea 102 Shewanella japonica 117 0 1 93973 species 1 0 225848 species Shewanella psychrophila 86 0 1 192073 species Shewanella denitrificans 52 0 1 70863 species Shewanella oneidensis 120 104 Shewanella putrefaciens 24 species 0 1 Moritellaceae 88 0 2 3 1 family 267891 85 0 1 58050 genus 0 1 80854 species Moritella viscosa 85 Pseudoalteromonadaceae 2179 0 7 25 family 267888 1 2172 Pseudoalteromonas 1 53246 genus 24 0 37 0 1 176102 species Pseudoalteromonas agarivorans 60 0 1 species 288 Pseudoalteromonas atlantica 114 72 Pseudoalteromonas espejiana species 28107 0 1 Pseudoalteromonas haloplanktis 69 1 0 species 228 114 Pseudoalteromonas piscicida 43662 species 0 1 species 247523 0 1 66 Pseudoalteromonas aliena Pseudoalteromonas tetraodonis 54 1 0 species 43659 0 1 species 394751 Pseudoalteromonas arctica 119 Pseudoalteromonas marina 52 0 1 267375 species 161398 species 0 1 81 Pseudoalteromonas phenolica 125 Pseudoalteromonas tunicata species 314281 0 1 153 Pseudoalteromonas spongiae 298657 species 0 1 518 0 5 194690 no rank 62 Pseudoalteromonas sp. SM9913 species 234831 0 1 149 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 species 1 0 0 1 species 1761891 Pseudoalteromonas sp. 13-15 75 Pseudoalteromonas sp. NC201 109 0 1 species 1514074 Pseudoalteromonas sp. Bsw20308 123 0 1 species 283699 88 Pseudoalteromonas rubra 43658 species 1 0 1 0 species 43657 Pseudoalteromonas luteoviolacea 137 Pseudoalteromonas translucida 85 0 1 166935 species Pseudoalteromonas issachenkonii 49 0 1 species 152297 28109 species 0 1 84 Pseudoalteromonas nigrifaciens 95 Pseudoalteromonas piratica 1348114 species 0 1 Alteromonadaceae 3414 0 30 29 1 family 72275 235 89404 genus 2 0 1 0 no rank 2618684 74 0 1 983545 species Glaciecola sp. 4H-3-7+YE-5 74 300231 species 1 0 161 Glaciecola nitratireducens 1 261825 genus 0 2 2 118 Agarivorans 116 Agarivorans gilvus 680279 species 0 1 2742 genus 1 10 0 28 1740 Marinobacter 167 Marinobacter similis species 1420916 0 1 0 3 83889 no rank 585 0 1 490759 species Marinobacter sp. BSs20148 121 1749259 species 0 1 271 Marinobacter sp. LQ44 1671721 species 1 0 193 Marinobacter sp. CP1 Marinobacter salarius 199 0 1 species 1420917 1 0 2743 species Marinobacter hydrocarbonoclasticus 353 Marinobacter adhaerens 181 1 0 species 1033846 330734 species 0 1 106 Marinobacter psychrophilus Marinobacter salinus 121 0 1 species 1874317 1 0 2 1 genus 1621534 Paraglaciecola 75 74 Paraglaciecola psychrophila 326544 species 0 1 Alteromonas 1012 0 5 10 genus 226 1 117 Alteromonas australica species 589873 0 1 species 314275 0 1 161 Alteromonas mediterranea species 28108 0 1 219 Alteromonas macleodii 1 0 species 715451 Alteromonas naphthalenivorans 86 252 0 3 no rank 2614992 species 2058133 1 0 87 Alteromonas sp. MB-3u-76 Alteromonas sp. Mac1 79 0 1 1777491 species Alteromonas sp. RW2A1 86 1 0 1917158 species 96 Alteromonas stellipolaris 233316 species 0 1 Alteromonas addita 76 0 1 species 287094 204 Lacimicrobium genus 1751872 1 4 0 2 200 Lacimicrobium alkaliphilum species 1526571 1 0 0 3 13 1 family 267892 Ferrimonadaceae 364 351 Ferrimonas 1 44011 genus 0 2 5 species 44012 0 1 346 Ferrimonas balearica 1 135619 order 65 0 75 8087 Oceanospirillales family 224372 1 0 11 9 1190 Alcanivoracaceae 6 0 17 1 genus 59753 Alcanivorax 970 species 59754 0 1 76 Alcanivorax borkumensis species 1306787 0 1 329 Alcanivorax pacificus 0 1 285091 species Alcanivorax dieselolei 242 83 1 0 no rank 2638842 1113728 species 0 1 83 Alcanivorax sp. NBRC 101098 0 1 1094342 species Alcanivorax xenomutans 223 2 0 20 1 genus 2025617 Ketobacter 209 0 1 1917421 species Ketobacter alkanivorans 189 Kangiellaceae 396 0 6 4 family 1920240 1 Kangiella 392 25 0 5 1 261963 genus 914150 species 0 1 78 Kangiella geojedonensis 1 0 1144748 species Kangiella sediminilitoris 99 261964 species 0 1 104 Kangiella koreensis 1 0 species 1561924 Kangiella profundi 86 224379 family 1 0 249 249 158481 genus 0 1 0 1 158327 species Hahella chejuensis 249 Saccharospirillaceae 327 4 0 1 1 family 255527 125 0 1 230494 genus 125 Reinekea forsetii 1336806 species 0 1 Gynuella 201 4 0 2 1 genus 1445504 Gynuella sunshinyii 197 0 1 species 1445505 11 0 8 1 family 135620 Oceanospirillaceae 949 Thalassolituus 65 1 0 2 genus 187492 1 0 1 187493 species Thalassolituus oleivorans 64 1537406 genus 0 1 93 93 Bacterioplanes sanyensis 1249553 species 0 1 genus 188907 0 1 86 86 Oleispira antarctica 188908 species 0 1 1 28253 genus 1 0 4 376 Marinomonas 145 Marinomonas mediterranea 119864 species 0 1 Marinomonas posidonica 118 0 1 936476 species 112 no rank 196814 1 0 species 400668 0 1 112 Marinomonas sp. MWYL1 Marinobacterium 321 0 5 2 48075 genus 1 0 1 species 1821621 Marinobacterium aestuarii 316 130 191033 family 0 2 130 Oleiphilus 1 genus 141450 0 2 19 111 Oleiphilus messinensis 141451 species 0 1 Halomonadaceae 4771 93 0 31 1 28256 family genus 376488 1 2 0 4 245 Halotalea species 376489 0 1 241 Halotalea alkalilenta 166 genus 42054 1 0 158080 species 0 1 166 Chromohalobacter salexigens 0 2 2 1 204286 genus Cobetia 328 0 1 species 28258 Cobetia marina 326 3044 Halomonas 1 2745 genus 0 37 15 Halomonas beimenensis 388 1 0 species 475662 species 213554 0 1 122 Halomonas campaniensis 246 Halomonas huangheensis species 1178482 0 1 0 1 115561 species Halomonas hydrothermalis 254 Halomonas aestuarii 352 0 1 1897729 species 0 1 species 507626 Halomonas chromatireducens 305 1340 0 8 2609666 no rank species 1504981 0 1 128 Halomonas sp. KO116 0 1 species 1883416 Halomonas sp. 1513 389 species 2136172 0 1 254 Halomonas sp. SF2003 128 Halomonas sp. 'Soap Lake #6' 1949203 species 0 1 Halomonas sp. R57-5 132 0 1 species 1610576 Halomonas sp. 'Soap Lake #7' 129 0 1 1962264 species Halomonas sp. GFAJ-1 95 0 1 species 1118153 1 0 species 1971364 Halomonas sp. GT 85 Kushneria 487 1 0 3 1 genus 504090 240 Kushneria konosiri species 698828 0 1 species 157779 0 1 246 Kushneria marisflavi 303 Salinicola 1 404432 genus 0 2 11 292 Salinicola tamaricis 1771309 species 1 0 0 5 114403 no rank 105 69 Candidatus Evansia 1495768 genus 1 2 0 1 species 1495769 0 1 68 Candidatus Evansia muelleri Candidatus Carsonella 10 0 1 2 114185 genus 1 0 1 species 114186 Candidatus Carsonella ruddii 9 26 0 1 235572 genus 91844 species 0 1 26 Candidatus Portiera aleyrodidarum no rank 118884 11 0 1068 137 0 1 genus 1524249 Pseudohongiella spirulinae 137 0 1 1249552 species 189 genus 1608298 1 0 Thiolapillus brandeum 189 1 0 species 1076588 214 0 4 32036 clade 0 1 species 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 69 Candidatus Ruthia 59 0 1 2 1 1541743 genus species 386487 0 1 58 Candidatus Ruthia magnifica Calyptogena okutanii thioautotrophic gill symbiont 86 0 1 species 410330 1 0 clade 198346 139 species 186490 0 1 139 Candidatus Baumannia cicadellinicola 139 0 2 655184 genus 1 0 1427364 species Candidatus Thioglobus singularis 73 0 1 species 1705394 Candidatus Thioglobus autotrophicus 66 2 0 2 1 genus 349742 Sedimenticola 250 species 1543721 0 1 248 Sedimenticola thiotaurini Vibrionales 6032 2 0 43 1 135623 order 0 35 42 1 641 family Vibrionaceae 6030 212 genus 2042066 0 1 Paraphotobacterium marinum 212 1 0 species 1755811 662 genus 1 97 0 30 4675 Vibrio 229 Vibrio fluvialis species 676 1 0 Vibrio gazogenes 183 0 1 687 species Vibrio nigripulchritudo 158 0 1 species 28173 0 1 species group 1891919 93 0 1 29498 species Vibrio tubiashii 93 0 1 species 45658 Vibrio scophthalmi 142 species 666 0 1 231 Vibrio cholerae 194 Vibrio mimicus 674 species 0 1 0 2 2614977 no rank 206 117 Vibrio sp. 2521-89 2014742 species 1 0 Vibrio sp. EJY3 89 0 1 species 1116375 species 212663 0 1 103 Vibrio tasmaniensis 1534743 species 0 1 93 Vibrio hyugaensis 672 species 0 1 351 Vibrio vulnificus 1 0 29494 species Vibrio furnissii 154 717610 species group 10 0 1658 species 670 1 0 305 Vibrio parahaemolyticus 89 Vibrio rotiferianus 190895 species 0 1 691 species 0 1 185 Vibrio natriegens 73 Vibrio owensii species 696485 0 1 Vibrio campbellii 245 0 1 species 680 1 0 species 663 Vibrio alginolyticus 274 116 Vibrio jasicida species 766224 0 1 0 2 species subgroup 2315253 231 0 1 species 150340 Vibrio antiquarius 73 158 Vibrio diabolicus 50719 species 0 1 Vibrio harveyi 140 0 1 669 species 211 Vibrio coralliilyticus species 190893 0 1 species 52443 0 1 92 Vibrio tapetis 86 Vibrio breoganii species 553239 0 1 98 Vibrio qinghaiensis species 2025808 0 1 187 Vibrio anguillarum 55601 species 0 1 109 Vibrio tritonius 1435069 species 0 1 489 Photobacterium 1 657 genus 4 0 4 0 1 1295392 species Photobacterium gaetbulicola 208 Photobacterium damselae 166 0 1 species 38293 111 Photobacterium profundum species 74109 0 1 genus 246861 1 0 5 2 185 Grimontia 180 Grimontia hollisae species 673 0 1 8 0 4 1 genus 511678 Aliivibrio 434 1 0 species 668 Aliivibrio fischeri 157 0 1 80852 species Aliivibrio wodanis 135 134 Aliivibrio salmonicida species 40269 1 0 1 135613 order 49 0 107 6360 Chromatiales 2568 Ectothiorhodospiraceae family 72276 1 28 0 18 0 3 2 1051 genus 1 Ectothiorhodospira 305 302 1 0 no rank 2684909 0 1 species 1442136 Ectothiorhodospira sp. BSL-9 302 133193 genus 1 0 2 5 343 Alkalilimnicola Alkalilimnicola ehrlichii 338 0 1 351052 species 1 106633 genus 27 0 6 1198 Thioalkalivibrio Thioalkalivibrio nitratireducens 189 0 1 species 186931 Thioalkalivibrio paradoxus 189 0 1 108010 species species 106634 0 1 250 Thioalkalivibrio versutus Thioalkalivibrio sulfidiphilus 367 0 1 1033854 species 176 0 1 no rank 2621013 species 396595 0 1 176 Thioalkalivibrio sp. K90mix 1 genus 1335745 3 0 5 301 Spiribacter Spiribacter curvatus 178 0 1 species 1335757 Spiribacter salinus 118 1 0 species 1335746 252 Halorhodospira 1 85108 genus 0 1 2 Halorhodospira halophila 251 0 1 1053 species 1 1765964 genus 0 2 1 141 Acidihalobacter 0 1 160660 species Acidihalobacter prosperus 140 326 no rank 451214 2 0 Thiohalobacter 326 0 2 5 1273155 genus 1 321 Thiohalobacter thiocyanaticus species 585455 0 1 220 Wenzhouxiangellaceae 1 1676141 family 0 5 3 1 1676142 genus 0 12 2 215 Wenzhouxiangella 0 1 1579979 species Wenzhouxiangella marina 203 family 449719 0 1 228 437504 genus 0 1 228 228 Granulosicoccus antarcticus species 437505 0 1 Chromatiaceae 2442 0 18 25 family 1046 1 379 Allochromatium 1 85072 genus 2 0 8 1049 species 0 1 371 Allochromatium vinosum Thiodictyon 513 0 2 6 genus 53392 1 507 Candidatus Thiodictyon syntrophicum species 1166950 0 1 69 Candidatus Nitrosoglobus 1980513 genus 1 0 2 2 67 Candidatus Nitrosoglobus terrae 1630141 species 0 1 genus 13724 1 8 0 2 370 Thiocystis Thiocystis violascens 362 0 1 species 73141 0 9 2 genus 85076 1 Marichromatium 322 313 Marichromatium purpuratum species 37487 0 1 1 0 no rank 82569 300 Chromatiaceae bacterium 2141T.STBD.0c.01a 300 1 0 1978339 species 1 156885 genus 8 0 2 254 Thioflavicoccus species 80679 1 0 246 Thioflavicoccus mobilis 210 Nitrosococcus genus 1227 1 0 4 4 species 133539 0 1 80 Nitrosococcus halophilus 473531 species 0 1 55 Nitrosococcus watsonii 1 0 species 1229 Nitrosococcus oceani 71 1 255526 family 4 0 11 302 Halothiobacillaceae Halothiobacillus 291 0 6 3 109262 genus 1 174 1 0 2636392 no rank species 1860122 1 0 174 Halothiobacillus sp. LS2 0 1 species 927 Halothiobacillus neapolitanus 111 167 Woeseiaceae family 1738654 1 2 0 2 165 0 1 1738655 genus 165 Woeseia oceani species 1548547 0 1 1 0 order 135615 96 1 0 family 868 96 869 genus 1 0 96 96 Dichelobacter nodosus species 870 0 1 0 13 27 1 order 1706369 Cellvibrionales 2478 Spongiibacteraceae 376 2 0 7 family 1706375 1 Zhongshania 107 0 2 7 1434050 genus 1 100 Zhongshania aliphaticivorans species 1470434 0 1 Spongiibacter 87 0 2 6 genus 630749 1 1 0 no rank 2631504 81 81 Spongiibacter sp. IMCC21906 species 1620392 0 1 0 2 6 1 1084558 genus Oceanicoccus 180 174 Oceanicoccus sagamiensis species 716816 0 1 1 1706372 family 0 2 3 281 Halieaceae 279 1217416 genus 0 2 930805 species 0 1 116 Halioglobus japonicus species 930806 0 1 163 Halioglobus pacificus 1 1706371 family 0 12 11 1129 Cellvibrionaceae 502 Cellvibrio 1 genus 10 4 0 5 0 1 155077 species Cellvibrio japonicus 183 no rank 2624793 2 0 314 Cellvibrio sp. PSBB006 188 0 1 1987723 species 1 0 species 1945512 Cellvibrio sp. PSBB023 126 0 1 447467 genus 196 196 Simiduia agarivorans species 447471 0 1 1 2036021 genus 0 2 1 142 Agarilytica 1 0 1737490 species Agarilytica rhodophyticola 141 genus 2425 1 0 2 1 160 Teredinibacter 1 0 species 2426 Teredinibacter turnerae 159 117 1 0 genus 316625 117 Saccharophagus degradans species 86304 0 1 1 family 1706373 3 0 5 679 Microbulbiferaceae 676 Microbulbifer 1 48073 genus 0 3 4 Microbulbifer thermotolerans 207 0 1 species 252514 277 Microbulbifer agarilyticus species 260552 0 1 189 Microbulbifer aggregans 1769779 species 1 0 Pseudomonadales 40198 0 212 128 1 order 72274 Moraxellaceae 4933 0 17 42 1 family 468 0 46 25 1 genus 469 Acinetobacter 3423 0 7 no rank 196816 648 120 Acinetobacter sp. ACNIH1 species 1636603 0 1 1407071 species 0 1 104 Acinetobacter sp. TGL-Y2 Acinetobacter sp. TTH0-4 47 0 1 1646498 species Acinetobacter sp. LoGeW2-3 130 0 1 species 1808001 species 1758189 0 1 75 Acinetobacter sp. ACNIH2 0 1 species 2079596 Acinetobacter sp. SWBY1 66 106 Acinetobacter sp. NCu2D-2 species 1608473 0 1 202950 species 0 1 178 62977 strain 0 1 178 Acinetobacter sp. ADP1 species 487316 0 1 102 Acinetobacter soli 177 Acinetobacter bereziniae 106648 species 0 1 0 1 species 756892 Acinetobacter indicus 94 29430 species 0 1 121 Acinetobacter haemolyticus 123 Acinetobacter junii species 40215 1 0 126 Acinetobacter oleivorans 1148157 species 1 0 0 1 species 108981 Acinetobacter schindleri 113 155 Acinetobacter equi 1324350 species 0 1 1226 909768 species group 5 0 1785128 species 0 1 102 Acinetobacter lactucae Acinetobacter nosocomialis 121 0 1 106654 species Acinetobacter calcoaceticus 214 0 1 471 species 48296 species 0 1 340 Acinetobacter pittii Acinetobacter baumannii 449 0 1 species 470 40214 species 0 1 112 Acinetobacter johnsonii Acinetobacter larvae 59 1 0 1789224 species Acinetobacter radioresistens 143 1 0 species 40216 943 Psychrobacter 1 genus 497 0 13 11 129 Psychrobacter cryohalolentis species 330922 1 0 Psychrobacter alimentarius 74 0 1 species 261164 0 6 no rank 196806 533 0 1 1028416 species Psychrobacter sp. DAB_AL43B 110 76 Psychrobacter sp. P11G5 1699624 species 1 0 1 0 1699622 species Psychrobacter sp. P2G3 67 Psychrobacter sp. AntiMn-1 101 1 0 1720344 species Psychrobacter sp. PRwf-1 81 1 0 349106 species 98 Psychrobacter sp. G 571800 species 0 1 Psychrobacter urativorans 54 1 0 species 45610 1 0 334543 species Psychrobacter arcticus 140 550 Moraxella 475 genus 1 0 5 4 56 Moraxella ovis 29433 species 1 0 132 Moraxella bovoculi species 386891 0 1 0 1 species 34062 Moraxella osloensis 267 0 1 480 species Moraxella catarrhalis 91 0 212 85 135621 family 1 Pseudomonadaceae 35053 80 0 1226 genus 286 1 Pseudomonas 33629 Pseudomonas rhizosphaerae 186 0 1 216142 species species 104087 0 1 486 Pseudomonas frederiksbergensis Pseudomonas antarctica 206 0 1 219572 species 0 1 species 157782 Pseudomonas parafulva 444 8 0 136849 species group 2987 0 1 2775504 no rank 134 0 1 species 1206777 Pseudomonas sp. Lz4W 134 Pseudomonas cichorii 155 1 0 36746 species Pseudomonas avellanae 201 1 0 46257 species species 251701 0 1 376 Pseudomonas syringae group genomosp. 3 551 species subgroup 251698 0 2 1 0 29438 species Pseudomonas savastanoi 276 0 1 47877 species Pseudomonas amygdali 275 275 Pseudomonas viridiflava species 33069 0 1 1295 0 1 species subgroup 251695 species 317 0 1 1295 Pseudomonas syringae Pseudomonas knackmussii 384 1 0 species 65741 244566 species 1 0 138 Pseudomonas lurida Pseudomonas brassicacearum 431 0 1 930166 species 122 Pseudomonas versuta species 1788301 0 1 227 Pseudomonas entomophila species 312306 0 1 101564 species 1 0 295 Pseudomonas alcaliphila Pseudomonas koreensis 318 0 1 198620 species 6902 0 30 196821 no rank Pseudomonas sp. CCOS 191 243 0 1 species 1649877 0 1 species 2083053 Pseudomonas sp. SWI44 176 Pseudomonas sp. FDAARGOS_380 214 1 0 species 2018067 Pseudomonas sp. CC6-YY-74 241 0 1 1930532 species Pseudomonas sp. St29 285 0 1 1500687 species species 1415630 0 1 181 Pseudomonas sp. TKP species 1283291 0 1 359 Pseudomonas sp. URMO17WK12:I11 Pseudomonas sp. FGI182 238 0 1 species 1259844 172 Pseudomonas sp. GR 6-02 1659194 species 0 1 0 1 2049589 species Pseudomonas sp. HLS-6 154 species 1856685 0 1 361 Pseudomonas sp. TCU-HL1 1827300 species 0 1 152 Pseudomonas sp. MYb193 Pseudomonas sp. PONIH3 248 1 0 1636610 species 1294143 species 1 0 375 Pseudomonas sp. ATCC 13867 Pseudomonas sp. DR 5-09 182 0 1 species 1534110 228 Pseudomonas sp. JY-Q 1338689 species 0 1 1 0 species 1611770 Pseudomonas sp. MRSN12121 273 species 1898684 0 1 261 Pseudomonas sp. LPH1 234 Pseudomonas sp. NC02 species 2067572 1 0 0 1 species 2083052 Pseudomonas sp. SWI36 266 species 2083051 0 1 184 Pseudomonas sp. SWI6 Pseudomonas sp. S-6-2 162 1 0 species 1931241 Pseudomonas sp. M30-35 95 0 1 species 1981174 232 Pseudomonas sp. XWY-1 2069256 species 0 1 species 2083055 0 1 245 Pseudomonas sp. LH1G9 1028989 species 1 0 303 Pseudomonas sp. StFLB209 Pseudomonas sp. LG1D9 160 1 0 2083054 species 170 Pseudomonas sp. UW4 1207075 species 0 1 210 Pseudomonas sp. VLB120 69328 species 1 0 298 Pseudomonas sp. Os17 species 1500686 0 1 4828 136841 species group 6 0 0 1 43263 species Pseudomonas alcaligenes 419 species 53412 1 0 416 Pseudomonas resinovorans Pseudomonas citronellolis 883 1 0 species 53408 species subgroup 1232139 1 0 388 species 1149133 1 0 388 Pseudomonas furukawaii Pseudomonas mendocina 1160 0 1 species 300 1562 Pseudomonas aeruginosa species 287 1 0 4988 136845 species group 0 6 1 0 species 47880 Pseudomonas fulva 502 310 Pseudomonas oryzihabitans 47885 species 0 1 Pseudomonas putida 2836 0 1 species 303 0 1 species 78327 Pseudomonas mosselii 484 Pseudomonas monteilii 670 0 1 76759 species Pseudomonas plecoglossicida 186 0 1 70775 species species 237610 0 1 323 Pseudomonas psychrotolerans 239 Pseudomonas alkylphenolica 237609 species 0 1 Pseudomonas silesiensis 192 0 1 1853130 species 0 9 species group 136843 4547 389 Pseudomonas protegens 380021 species 0 1 0 1 76758 species Pseudomonas orientalis 167 Pseudomonas veronii 194 0 1 76761 species Pseudomonas poae 156 1 0 species 200451 2519 Pseudomonas fluorescens species 294 0 1 75612 species 0 1 233 Pseudomonas mandelii 47879 species 0 1 210 Pseudomonas corrugata 281 Pseudomonas trivialis species 200450 0 1 398 Pseudomonas azotoformans species 47878 0 1 196 Pseudomonas cerasi 1583341 species 0 1 157783 species 0 1 232 Pseudomonas cremoricolorata 1707 species group 136842 0 2 Pseudomonas fragi 376 1 0 species 296 0 1 587753 species Pseudomonas chlororaphis 1331 0 2 species group 136846 2025 species subgroup 578833 0 1 1732 316 species 0 1 1732 Pseudomonas stutzeri species 74829 0 1 293 Pseudomonas balearica 1101 0 3 351 subfamily Azotobacter 1101 3 0 16 1 genus 352 354 species 1 0 410 Azotobacter vinelandii 675 Azotobacter chroococcum species 353 0 1 111 1849530 genus 1 0 0 1 1697053 species Oblitimonas alkaliphila 111 Immundisolibacterales 417 3 0 4 1 order 1934945 1 1934946 family 0 3 7 414 Immundisolibacteraceae 0 5 2 1934947 genus 1 Immundisolibacter 407 1810504 species 0 1 402 Immundisolibacter cernigliae 30 0 135625 order 4268 0 61 30 712 family 1 Pasteurellaceae 4268 0 5 4 1 genus 75984 Mannheimia 469 Mannheimia haemolytica 118 1 0 75985 species no rank 2645054 1 0 132 species 1432056 0 1 132 Mannheimia sp. USDA-ARS-USMARC-1261 214 Mannheimia varigena 85404 species 0 1 158 697331 genus 1 0 158 [Mannheimia] succiniciproducens 157673 species 0 1 222 Glaesserella 1 2094023 genus 1 0 2 Glaesserella parasuis 221 0 1 species 738 590 Actinobacillus 1 713 genus 10 0 5 1 0 species 716 Actinobacillus suis 93 67854 species 1 0 127 Actinobacillus succinogenes 163 Actinobacillus equuli species 718 1 0 197 Actinobacillus pleuropneumoniae 715 species 0 1 1 155493 genus 0 3 2 161 Gallibacterium 158 Gallibacterium anatis 750 species 0 1 Haemophilus 1428 6 0 7 genus 724 1 375 Haemophilus influenzae species 727 0 1 642 Haemophilus parainfluenzae species 729 0 1 140 Haemophilus pittmaniae species 249188 0 1 0 1 species 730 [Haemophilus] ducreyi 158 1 0 no rank 2609962 106 Haemophilus sp. oral taxon 036 106 0 1 712310 species 1 0 2 1 476528 genus Bibersteinia 236 0 1 47735 species Bibersteinia trehalosi 235 0 1 3 1 416916 genus Aggregatibacter 412 species 714 1 0 173 Aggregatibacter actinomycetemcomitans 0 1 species 732 Aggregatibacter aphrophilus 238 0 1 214906 genus 157 157 Histophilus somni species 731 0 1 Pasteurella 374 1 0 3 1 745 genus 260 Pasteurella multocida species 747 0 1 754 species 1 0 113 Pasteurella dagmatis 1 order 135614 53 0 132 14938 Xanthomonadales 0 53 14 1775411 family 1 Rhodanobacteraceae 2572 0 2 6 genus 75309 1 Rhodanobacter 371 666685 species 1 0 365 Rhodanobacter denitrificans 323413 genus 1 3 0 2 344 Dokdonella 323415 species 0 1 341 Dokdonella koreensis 4 0 2 1 genus 242605 Luteibacter 217 Luteibacter rhizovicinus 213 0 1 242606 species 4 0 32 genus 231454 1 Dyella 1157 1 0 231455 species Dyella japonica 441 1 0 445710 species Dyella thiooxydans 406 1 0 1379159 species Dyella jiangningensis 278 143 2233801 genus 0 1 Xanthomonadales bacterium D13 143 0 1 2021234 species 1 70411 genus 0 3 2 287 Frateuria 1 0 81475 species Frateuria aurantia 284 Xanthomonadaceae 12234 149 0 38 1 32033 family 12 0 3 genus 83618 1 Pseudoxanthomonas 948 Pseudoxanthomonas suwonensis 628 1 0 species 314722 308 Pseudoxanthomonas spadix 415229 species 0 1 Lysobacter 1535 0 5 28 68 genus 1 69 species 1 0 334 Lysobacter enzymogenes 0 1 262324 species Lysobacter gummosus 403 372 Lysobacter antibioticus 84531 species 1 0 435897 species 0 1 398 Lysobacter capsici 1 0 2370 genus 118 Xylella fastidiosa 118 0 1 2371 species 0 17 236 338 genus 1 Xanthomonas 4751 776 0 2 643453 species group 581 Xanthomonas citri 346 species 0 1 366648 species 1 0 195 Xanthomonas fuscans 192 Xanthomonas perforans 442694 species 1 0 1 0 53413 species Xanthomonas axonopodis 207 Xanthomonas alfalfae 187 0 1 366650 species Xanthomonas albilineans 132 1 0 species 29447 206 Xanthomonas fragariae species 48664 1 0 1 0 343 species Xanthomonas translucens 459 species 56459 1 0 132 Xanthomonas vasicola 238 Xanthomonas vesicatoria species 56460 0 1 188 Xanthomonas euvesicatoria species 456327 0 1 Xanthomonas hortorum 209 0 1 56454 species species 339 0 1 632 Xanthomonas campestris species 1985254 1 0 205 Xanthomonas phaseoli species 56458 0 1 383 Xanthomonas sacchari 369 Xanthomonas oryzae 347 species 0 1 1 83614 genus 2 0 2 229 Luteimonas 1 0 2006110 species Luteimonas sp. 100111 227 4504 Stenotrophomonas 1 40323 genus 102 0 9 250 Stenotrophomonas nitritireducens species 83617 0 1 128780 species 0 1 584 Stenotrophomonas acidaminiphila 196198 no rank 4 0 1137 1 0 2005046 species Stenotrophomonas sp. WZN-1 326 0 1 species 1793721 Stenotrophomonas sp. KCTC 12332 231 1827305 species 0 1 255 Stenotrophomonas sp. MYb57 1 0 1904944 species Stenotrophomonas sp. LM091 325 0 1 species 216778 Stenotrophomonas rhizophila 322 1 0 995085 species group 2109 2109 Stenotrophomonas maltophilia species 40324 0 1 560 33811 no rank 0 2 endosymbiont of unidentified scaly snail isolate Monju 293 0 1 1248727 species 83406 species 1 0 267 gamma proteobacterium HdN1 1 1692040 order 0 6 14 589 Acidiferrobacterales 0 5 20 1 family 1692041 Acidiferrobacteraceae 575 0 1 2 1 1744881 genus Sulfuricaulis 321 320 Sulfuricaulis limicola 1620215 species 0 1 Sulfurifustis 234 2 0 2 1 1692042 genus 232 Sulfurifustis variabilis 1675686 species 0 1 1558 Methylococcales order 135618 1 0 16 13 0 16 12 1 family 403 Methylococcaceae 1542 1 genus 762296 1 0 2 131 Methylovulum 1704499 species 1 0 130 Methylovulum psychrotolerans 0 2 1 genus 39773 1 Methylomicrobium 208 0 1 species 271065 Methylomicrobium alcaliphilum 207 1 413 genus 2 0 4 275 Methylococcus 414 species 1 0 271 Methylococcus capsulatus 416 genus 1 0 5 8 912 Methylomonas no rank 2608980 0 1 350 species 1727196 0 1 350 Methylomonas sp. DH-1 1 0 421 species Methylomonas methanica 132 Methylomonas koyamae 291 0 1 species 702114 1 0 species 1538553 Methylomonas denitrificans 131 57337 Enterobacterales 91347 order 1 242 0 307 1903412 family 1 0 14 9 2644 Hafniaceae Edwardsiella 2106 8 0 117 genus 635 1 Edwardsiella ictaluri 179 0 1 67780 species Edwardsiella piscicida 295 0 1 species 1263550 0 1 species 93378 Edwardsiella hoshinae 184 1 0 636 species Edwardsiella tarda 506 Edwardsiella anguillarum 258 0 1 species 1821960 567 no rank 2676541 2 0 1650654 species 1 0 258 Edwardsiella sp. LADL05-105 1578828 species 0 1 309 Edwardsiella sp. EA181011 Obesumbacterium 122 0 2 4 1 82982 genus 0 1 82983 species Obesumbacterium proteus 118 1 568 genus 0 3 4 407 Hafnia 279 Hafnia alvei species 569 0 1 124 0 1 2621980 no rank Hafnia sp. CBA7124 124 1 0 1848580 species 116 0 308 family 543 1 Enterobacteriaceae 30831 378 Shigella 620 genus 1 0 13 4 2629414 no rank 1 0 101 Shigella sp. PAMC 28760 101 0 1 1813821 species 0 1 species 622 Shigella dysenteriae 172 0 1 623 species Shigella flexneri 92 0 30 8 1 genus 413496 Cronobacter 1981 Cronobacter sakazakii 466 0 1 species 28141 species 413501 0 1 287 Cronobacter muytjensii 413497 species 0 1 278 Cronobacter dublinensis Cronobacter turicensis 206 0 1 species 413502 Cronobacter universalis 244 0 1 535744 species Cronobacter malonaticus 197 1 0 species 413503 273 Cronobacter condimenti 1163710 species 1 0 49 Candidatus Riesia genus 401618 1 0 1 2 48 Candidatus Riesia pediculicola 401619 species 0 1 0 3 4 1 1330546 genus Pluralibacter 1063 397 [Enterobacter] lignolyticus 1334193 species 1 0 0 1 species 61647 Pluralibacter gergoviae 662 Enterobacter 6523 0 22 319 1 547 genus 1711 0 9 2608935 no rank Enterobacter sp. HK169 137 0 1 species 1868135 Enterobacter sp. 638 225 0 1 399742 species 247 Enterobacter sp. FY-07 species 1692238 0 1 0 1 1914861 species Enterobacter sp. SA187 195 Enterobacter sp. E20 133 1 0 1560339 species 185 Enterobacter sp. ODB01 species 1827481 0 1 Enterobacter sp. CRENT-193 233 0 1 2051905 species 0 1 1977566 species Enterobacter sp. Crenshaw 123 233 Enterobacter sp. R4-368 species 1166130 0 1 12 0 354276 species group 4493 Enterobacter cloacae 1723 0 1 species 550 299767 species 1 0 152 Enterobacter ludwigii 2757714 no rank 0 3 507 0 1 2027919 species Enterobacter cloacae complex bacterium 190 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 152 0 1 species 2077137 Enterobacter cloacae complex sp. ECNIH7 165 0 1 species 1915310 662 Enterobacter asburiae species 61645 0 1 174 Enterobacter kobei species 208224 0 1 Enterobacter hormaechei 814 0 488 3 158836 species 1 203 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1812934 0 1 Enterobacter xiangfangensis 123 0 1 1296536 subspecies 263 Enterobacter cancerogenus 69218 species 1 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 198 1 0 1812935 species 0 11 4 genus 1330545 1 Lelliottia 814 61646 species 0 1 354 Lelliottia amnigena species 1907578 1 0 261 Lelliottia jeotgali 188 Lelliottia nimipressuralis 69220 species 0 1 36866 no rank 0 5 1055 species 693444 0 1 177 Enterobacteriaceae bacterium strain FGI 57 Plautia stali symbiont 243 1 0 891974 species 1920128 species 0 1 190 Enterobacteriaceae bacterium ENNIH3 1920109 species 0 1 207 Enterobacteriaceae bacterium ENNIH2 238 Enterobacteriaceae bacterium ENNIH1 2066051 species 1 0 Kluyvera 243 1 0 2 579 genus 1 242 Kluyvera intermedia 61648 species 0 1 160674 genus 1 3 0 6 867 Raoultella 0 1 species 575 Raoultella planticola 251 0 1 54291 species Raoultella ornithinolytica 610 1396 Salmonella 1 genus 590 3 0 3 0 1 species 54736 Salmonella bongori 205 Salmonella enterica 1188 0 1 28901 species 15 0 5 561 genus 1 Escherichia 2250 species 562 1 0 1665 Escherichia coli 1 0 species 208962 Escherichia albertii 259 143 Escherichia fergusonii species 564 0 1 Escherichia marmotae 168 0 1 1499973 species 823 Leclercia 1 genus 83654 17 0 4 566 0 2 no rank 2627398 1920116 species 0 1 274 Leclercia sp. LSNIH3 species 1920114 1 0 292 Leclercia sp. LSNIH1 83655 species 0 1 240 Leclercia adecarboxylata 1 genus 1330547 0 7 5 1156 Kosakonia 0 1 species 1158459 Kosakonia sacchari 196 283686 species 1 0 275 Kosakonia radicincitans 0 1 497725 species Kosakonia oryzae 310 species 208223 1 0 368 Kosakonia cowanii 0 204 10 1 genus 570 Klebsiella 6155 1 0 species 571 Klebsiella oxytoca 1279 0 2 2608929 no rank 731 1905288 species 0 1 346 Klebsiella sp. LTGPAF-6F 385 Klebsiella sp. M5al species 1934254 0 1 639 Klebsiella michiganensis species 1134687 0 1 1463165 species 0 1 434 Klebsiella quasipneumoniae 254 Klebsiella quasivariicola species 2026240 1 0 440 Klebsiella aerogenes 548 species 1 0 species 244366 0 1 707 Klebsiella variicola species 573 0 1 1467 Klebsiella pneumoniae 767 no rank 191675 0 16 84563 clade 16 0 767 297 84564 clade 0 7 297 Candidatus Blochmannia genus 203804 1 7 0 2 Candidatus Blochmannia pennsylvanicus 30 1 0 101534 species species 203907 0 1 65 Candidatus Blochmannia floridanus 251542 species 0 1 46 Candidatus Blochmannia chromaiodes 711328 no rank 0 2 93 1505596 species 0 1 40 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505597 species 0 1 53 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1 species 251535 Candidatus Blochmannia vafer 61 64 genus 1906660 1 0 Candidatus Mikella endobia 64 0 1 species 1778264 clade 146507 0 3 174 genus 568987 0 1 71 71 Candidatus Hamiltonella defensa species 138072 1 0 1 0 species 1199245 secondary endosymbiont of Ctenarytaina eucalypti 45 58 secondary endosymbiont of Heteropsylla cubana species 134287 0 1 0 1 1906661 genus 38 species 1070130 0 1 38 Candidatus Gullanella endobia 29 1906657 genus 0 1 29 Candidatus Doolittlea endobia 1778262 species 0 1 32 1 0 199891 clade 0 1 1835721 species secondary endosymbiont of Trabutina mannipara 32 19 1906659 genus 1 0 19 Candidatus Hoaglandella endobia 1778263 species 0 1 114 1682492 genus 0 1 1410383 species 0 1 114 Candidatus Tachikawaea gelatinosa 1048757 genus 1 0 26 0 1 species 1048758 Candidatus Moranella endobia 26 1 genus 544 14 0 131 3781 Citrobacter Citrobacter rodentium 241 1 0 67825 species 35703 species 0 1 563 Citrobacter amalonaticus 323 no rank 2644389 0 2 1702170 species 0 1 157 Citrobacter sp. FDAARGOS_156 Citrobacter sp. CFNIH10 166 0 1 1920110 species 2022 1344959 species group 7 0 178 Citrobacter freundii complex sp. CFNIH4 species 2077148 0 1 0 1 species 546 Citrobacter freundii 729 Citrobacter freundii complex sp. CFNIH9 149 0 1 species 2077149 1 0 2066049 species Citrobacter freundii complex sp. CFNIH2 205 species 2077147 1 0 139 Citrobacter freundii complex sp. CFNIH3 57706 species 0 1 337 Citrobacter braakii 0 1 species 67827 Citrobacter werkmanii 285 203 Citrobacter farmeri species 67824 1 0 0 1 species 545 Citrobacter koseri 298 2 0 5 1 genus 158483 Cedecea 821 816 Cedecea neteri 158822 species 1 0 71 genus 409304 0 1 Candidatus Ishikawaella capsulata 71 0 1 species 168169 304 1 0 genus 1335483 0 1 species 563 Shimwellia blattae 304 307 2 0 451511 no rank 0 2 6 1 genus 702 Plesiomonas 307 1 0 703 species Plesiomonas shigelloides 301 10030 Yersiniaceae 1903411 family 1 0 33 38 genus 929812 1 0 305 305 Gibbsiella quercinecans species 929813 0 1 Rouxiella 15 0 1 1565532 genus Serratia 6706 0 16 358 1 genus 613 Serratia rubidaea 395 1 0 61652 species 82996 species 0 1 590 Serratia plymuthica 264 Serratia liquefaciens 614 species 0 1 183 Serratia proteamaculans species 28151 0 1 0 1 615 species Serratia marcescens 1610 0 1 47917 species Serratia fonticola 508 Serratia ficaria 382 0 1 61651 species 2416 0 8 2647522 no rank Serratia sp. MYb239 411 0 1 species 2033438 488142 species 0 1 344 Serratia sp. SCBI Serratia sp. SSNIH1 323 1 0 1758196 species Serratia sp. FGI94 385 1 0 671990 species 221 Serratia sp. ATCC 39006 species 104623 0 1 169 Serratia sp. AS13 768493 species 1 0 Serratia sp. AS12 169 0 1 species 768490 Serratia sp. FS14 394 1 0 1327989 species 34037 genus 1 31 0 4 682 Rahnella 466 no rank 2635087 0 2 Rahnella sp. Y9602 190 0 1 741091 species Rouxiella sp. ERMR1:05 276 1 0 1805933 species Rahnella aquatilis 185 0 1 species 34038 0 2 6 1 1745211 genus Chania 174 Chania multitudinisentens 168 0 1 1639108 species Yersinia 2115 0 13 46 1 genus 629 Yersinia enterocolitica 429 0 1 630 species Yersinia aleksiciae 139 0 1 263819 species 139 Yersinia intermedia species 631 1 0 112 Yersinia rohdei 29485 species 0 1 species 29486 0 1 115 Yersinia ruckeri 135 Yersinia kristensenii 28152 species 1 0 Yersinia aldovae 116 0 1 29483 species 0 1 2653513 no rank 124 Yersinia sp. FDAARGOS_228 124 0 1 1839800 species 407 3 0 1649845 species group 187 Yersinia pseudotuberculosis 633 species 1 0 144 Yersinia pestis species 632 0 1 species 367190 0 1 76 Yersinia similis 0 1 29484 species Yersinia frederiksenii 353 2 0 1903416 family 164 4 0 2 1 82984 genus Pragia 164 160 Pragia fontium 82985 species 1 0 Pectobacteriaceae 4743 0 24 20 1 family 1903410 Brenneria 264 0 8 2 71655 genus 1 256 Brenneria goodwinii species 1109412 0 1 Dickeya 2032 0 6 75 204037 genus 1 Dickeya dianthicola 323 0 1 species 204039 Dickeya dadantii 336 1 0 204038 species 288 Dickeya fangzhongdai species 1778540 0 1 0 1 204042 species Dickeya zeae 361 1089444 species 0 1 649 Dickeya solani 0 5 20 84565 genus 1 Sodalis 647 1 0 species 1239307 Sodalis praecaptivus 231 1929246 species 0 1 34 Sodalis endosymbiont of Henestaris halophilus 63612 species 0 1 170 Sodalis glossinidius 0 1 1486991 species Candidatus Sodalis pierantonius 192 Pectobacterium 1776 6 0 77 122277 genus 1 0 1 species 1905730 Pectobacterium parmentieri 200 2042057 species 1 0 386 Pectobacterium polaris Pectobacterium wasabiae 145 0 1 55208 species 554 species 0 1 773 Pectobacterium carotovorum Pectobacterium atrosepticum 195 1 0 29471 species 2464 Morganellaceae 1903414 family 1 9 0 21 Providencia 405 0 1 4 1 genus 586 587 species 0 1 90 Providencia rettgeri 91 Providencia alcalifaciens species 126385 0 1 1 0 species 588 Providencia stuartii 223 genus 583 1 0 3 2 350 Proteus 584 species 0 1 220 Proteus mirabilis Proteus vulgaris 128 0 1 species 585 7 0 4 genus 29487 1 Photorhabdus 378 0 1 species 574560 Photorhabdus temperata 122 0 1 291112 species Photorhabdus asymbiotica 124 species 29488 0 1 125 Photorhabdus luminescens 401 Morganella 1 581 genus 10 0 2 391 Morganella morganii species 582 1 0 1 0 genus 637 118 0 1 species 634113 Arsenophonus symbiont of Lipoptena fortisetosa 118 6 0 9 1 genus 626 Xenorhabdus 803 40577 species 0 1 133 Xenorhabdus poinarii 119 Xenorhabdus doucetiae 351671 species 0 1 156 Xenorhabdus nematophila 628 species 0 1 351679 species 0 1 129 Xenorhabdus hominickii 257 Xenorhabdus bovienii 40576 species 0 1 28 0 24 family 1903409 1 Erwiniaceae 5847 1 82986 genus 0 6 2 180 Tatumella 174 Tatumella citrea 53336 species 0 1 1 genus 51228 1 0 2 167 Wigglesworthia Wigglesworthia glossinidia 166 0 1 species 51229 670 genus 2100764 0 2 355 Pantoea calida species 665913 0 1 Pantoea gaviniae 315 0 1 species 665914 8 0 48 genus 551 1 Erwinia 1306 1 0 species 79967 Erwinia pyrifoliae 175 182337 species 0 1 254 Erwinia billingiae 217 Erwinia gerundensis 1619313 species 0 1 193 1 0 no rank 2622719 215689 species 1 0 193 Erwinia sp. Ejp617 338565 species 0 1 168 Erwinia tasmaniensis 191 Erwinia amylovora 552 species 0 1 1 0 species 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 60 Buchnera 973 0 2 2 genus 32199 1 9 species 0 1 971 Buchnera aphidicola 105 0 11 1 53335 genus Pantoea 2527 170 Pantoea rwandensis species 1076550 0 1 species group 1654067 1 0 421 549 species 0 1 421 Pantoea agglomerans 66269 species 1 0 185 Pantoea stewartii 72 Candidatus Pantoea carbekii 1235990 species 0 1 470934 species 0 1 421 Pantoea vagans Pantoea alhagi 237 1 0 1891675 species 0 3 2630326 no rank 663 Pantoea sp. PSNIH1 208 0 1 1484158 species 1484157 species 0 1 264 Pantoea sp. PSNIH2 0 1 species 592316 Pantoea sp. At-9b 191 Pantoea ananatis 253 0 1 species 553 Thiotrichales 3314 32 0 4 1 72273 order Francisellaceae 2276 14 0 2 34064 family 1 Francisella 2170 0 12 17 262 genus 1 549298 species 0 1 117 Francisella halioticida 197 Francisella sp. CA97-1460 1542390 species 1 0 339 Francisella philomiragia species 28110 0 1 212 Francisella noatunensis 657445 species 1 0 Francisella sp. TX077308 116 1 0 573569 species 0 1 573570 species Francisella sp. TX077310 180 Francisella hispaniensis 132 0 1 species 622488 Francisella persica 109 0 1 species 954 498 Francisella tularensis 263 species 1 0 no rank 2610885 0 2 253 0 1 1547445 species Francisella sp. FSC1006 144 109 Francisella sp. MA067296 species 475375 0 1 104 1869285 genus 0 1 Allofrancisella guangzhouensis 104 0 1 species 594679 0 3 14 135616 family 1 Piscirickettsiaceae 775 1 40222 genus 1 0 3 176 Methylophaga Methylophaga nitratireducenticrescens 119 1 0 754476 species Methylophaga frappieri 56 1 0 754477 species Hydrogenovibrio 79 2 0 19 1 genus 28884 60 Hydrogenovibrio crunogenus species 39765 0 1 933 genus 1 0 2 3 98 Thiomicrospira Thiomicrospira aerophila 51 0 1 92245 species Thiomicrospira cyclica 45 0 1 147268 species 227 3 0 34067 genus 141 2 0 2621467 no rank 59 Cycloclasticus sp. P1 385025 species 0 1 Cycloclasticus sp. PY97N 82 1 0 species 728003 species 1329899 1 0 86 Cycloclasticus zancles Piscirickettsia 192 0 4 2 genus 1237 1 Piscirickettsia salmonis 188 1 0 species 1238 259 3 0 135617 family 160 genus 1021 0 1 0 1 288004 species Beggiatoa leptomitoformis 160 0 3 2 40751 genus 1 Thioploca 99 Thioploca ingrica 96 0 1 species 40754 1763 Legionellales 1 118969 order 19 0 2 1 444 family 14 0 1 1557 Legionellaceae Legionella 1454 0 4 12 1 genus 445 Legionella longbeachae 127 0 1 450 species species 452 0 1 84 Legionella spiritensis 87 Legionella oakridgensis 29423 species 0 1 115 Legionella fallonii species 96230 0 1 0 1 1867846 species Legionella clemsonensis 126 0 1 species 2005262 Legionella endosymbiont of Polyplax serrata 60 0 1 449 species Legionella hackeliae 103 45067 species 0 1 75 Legionella lansingensis 453 Legionella pneumophila species 446 1 0 Legionella sainthelensi 110 0 1 species 28087 110 Legionella waltersii 66969 species 1 0 102 465 genus 1 0 0 1 species 451 Tatlockia micdadei 102 Coxiellaceae 204 4 0 13 family 118968 1 150 776 genus 0 2 species 777 0 1 110 Coxiella burnetii 0 1 no rank 2676648 40 0 1 325775 species Coxiella endosymbiont of Amblyomma americanum 40 0 1 no rank 134284 41 Coxiella-like endosymbiont 41 0 1 1592897 species 253 0 2 1775403 order 253 family 2689614 0 2 1 469322 genus 0 2 4 253 Steroidobacter Steroidobacter denitrificans 249 1 0 465721 species 1 1240482 order 0 5 1 302 Orbales Orbaceae 301 4 0 2 1 family 1240483 0 1 genus 1335631 129 species 1267021 0 1 129 Frischella perrara Gilliamella 170 0 3 2 1 1193503 genus species 1196095 1 0 167 Gilliamella apicola 1 order 135624 29 0 49 9519 Aeromonadales 9470 Aeromonadaceae 84642 family 1 0 28 82 547 Zobellella 1 genus 347533 2 0 9 538 Zobellella denitrificans species 347534 1 0 Aeromonas 7998 0 18 550 genus 642 1 2315 257493 no rank 0 8 species 1636606 0 1 263 Aeromonas sp. ASNIH1 Aeromonas sp. ASNIH5 340 0 1 1758179 species 254 Aeromonas sp. ASNIH7 species 1920107 0 1 Aeromonas sp. CA23 354 0 1 species 2033032 204 Aeromonas sp. ASNIH2 1636607 species 0 1 300 Aeromonas sp. CU5 2033033 species 0 1 Aeromonas sp. ASNIH4 342 1 0 species 1636609 0 1 species 1636608 Aeromonas sp. ASNIH3 258 Aeromonas media 254 1 0 651 species 1 0 species 644 Aeromonas hydrophila 1771 0 1 648 species Aeromonas caviae 238 280 Aeromonas schubertii 652 species 0 1 355 Aeromonas rivipollensis 948519 species 0 1 612 Aeromonas salmonicida 645 species 1 0 0 1 196024 species Aeromonas dhakensis 412 Aeromonas veronii 852 0 1 species 654 1 0 558964 species Aeromonas aquatica 359 Oceanisphaera 193 0 3 4 genus 225143 1 Oceanisphaera sp. AMac2203 47 1 0 1903694 species 142 Oceanisphaera profunda 1416627 species 1 0 471 Oceanimonas 129577 genus 1 8 0 2 no rank 2636315 0 1 463 1 0 species 511062 Oceanimonas sp. GK1 463 Tolumonas 179 2 0 1 genus 43947 1 Tolumonas auensis 178 0 1 43948 species 1807140 class 6 0 513 225057 order 1 7 0 6 513 Acidithiobacillales 1 family 225058 16 0 5 506 Acidithiobacillaceae 490 Acidithiobacillus 1 genus 119977 0 9 4 175 Acidithiobacillus ferrivorans 160808 species 0 1 33059 species 0 1 148 Acidithiobacillus caldus 0 1 920 species Acidithiobacillus ferrooxidans 158 class 1553900 1 0 11 1 971 Oligoflexia 1 2024979 order 1 0 5 341 Bacteriovoracales 177 family 263369 2 0 1 genus 146784 0 2 2 177 Bacteriovorax Bacteriovorax stolpii 175 0 1 species 960 163 family 1652132 2 0 163 Halobacteriovorax 1 genus 1652133 2 0 3 160 Halobacteriovorax marinus species 97084 0 1 Bdellovibrionales 629 0 5 1 order 213481 1 0 2 4 213483 family 1 Bdellovibrionaceae 628 Bdellovibrio 626 5 0 3 1 genus 958 95 Bdellovibrio exovorus species 453816 1 0 0 1 species 959 Bdellovibrio bacteriovorus 526 615879 clade 1783270 339 0 clade 68336 0 324 614261 1090 phylum 0 21 3040 3040 Chlorobia class 191410 1 9 0 21 Chlorobiales 3031 0 20 28 order 191411 1 1 191412 family 0 17 19 3003 Chlorobiaceae 986 Chlorobaculum 1 256319 genus 0 10 4 Chlorobaculum limnaeum 343 0 1 274537 species 0 1 species 1097 Chlorobaculum tepidum 235 398 Chlorobaculum parvum species 274539 1 0 8 0 274493 no rank 1165 Chlorobium 715 0 5 4 1 1091 genus species 1092 1 0 204 Chlorobium limicola Chlorobium phaeovibrioides 118 0 1 1094 species 277 Chlorobium phaeobacteroides 1096 species 0 1 Chlorobium chlorochromatii 112 1 0 species 337090 Pelodictyon 450 3 0 5 1 1099 genus 1 0 species 1100 Pelodictyon luteolum 297 148 Pelodictyon phaeoclathratiforme 34090 species 1 0 0 1 genus 100715 175 175 Chloroherpeton thalassium 100716 species 1 0 1 1101 genus 5 0 4 660 Prosthecochloris 168 Prosthecochloris aestuarii species 1102 0 1 488 3 0 2632826 no rank Prosthecochloris sp. HL-130-GSB 171 1 0 species 1974213 Prosthecochloris sp. CIB 2401 108 0 1 1868325 species 209 Prosthecochloris sp. GSB1 281093 species 0 1 976 phylum 1 0 299 13 610710 Bacteroidetes 0 6 23 order 1100069 1 Bacteroidetes Order II. Incertae sedis 1469 0 5 20 family 563843 1 Rhodothermaceae 1446 29548 genus 1 0 8 2 635 Rhodothermus 29549 species 1 0 627 Rhodothermus marinus no rank 1196022 1 0 533 533 Rhodothermaceae bacterium RA 1779382 species 0 1 258 genus 146918 0 1 Salinibacter ruber 258 0 1 species 146919 1 200643 class 21 0 66 566673 Bacteroidia order 1970189 1 0 3 11 1205 Marinilabiliales Marinifilaceae 321 2 0 1 1 family 1573805 2060722 genus 1 0 320 320 Marinifilaceae bacterium SPP2 1717717 species 0 1 Salinivirgaceae 237 0 3 5 family 1970190 1 232 Salinivirga 1970191 genus 1 0 2 3 Salinivirga cyanobacteriivorans 229 0 1 species 1307839 Marinilabiliaceae 231 4 0 2 family 558415 1 genus 1193324 0 1 227 889453 species 1 0 227 Alkalitalea saponilacus family 1471398 1 1 0 3 413 Prolixibacteraceae genus 1471399 1 2 0 3 412 Draconibacterium Draconibacterium orientale 409 0 1 species 1168034 565447 Bacteroidales 171549 order 1 0 136 54 14098 1853231 family 0 2 Odoribacter 14098 0 2 2 genus 283168 1 species 28118 0 1 14096 Odoribacter splanchnicus 333046 no rank 4 0 261747 0 1 genus 511434 260 species 511435 0 1 260 Candidatus Azobacteroides pseudotrichonymphae 261487 0 3 909656 genus species 376805 0 1 11118 Bacteroides salanitronis Bacteroides dorei 58205 0 1 species 357276 Bacteroides vulgatus 192164 1 0 species 821 15012 Barnesiellaceae 1 family 2005519 1 0 3 15011 Barnesiella 397864 genus 1 0 10 2 Barnesiella viscericola 15001 0 1 species 397865 1879 family 2005520 0 3 570 genus 294702 1 0 species 1642647 1 0 570 Proteiniphilum saccharofermentans genus 1784836 1 0 441 0 1 species 1562970 Fermentimonas caenicola 441 868 genus 307628 1 0 0 1 1642646 species Petrimonas mucosa 868 Porphyromonadaceae 1354 0 4 4 1 family 171551 0 3 4 1 836 genus Porphyromonas 1350 902 Porphyromonas gingivalis 837 species 1 0 444 Porphyromonas asaccharolytica 28123 species 0 1 223 185291 no rank 1 0 1400053 species 1 0 223 Bacteroidales bacterium CF 59644 Tannerellaceae 2005525 family 1 7 0 24 Parabacteroides 57272 0 15 3 genus 375288 1 2649774 no rank 0 1 35845 Parabacteroides sp. CT06 35845 0 1 species 2025876 21412 Parabacteroides distasonis 823 species 0 1 3 0 6 1 genus 195950 Tannerella 2348 1652 Tannerella forsythia species 28112 0 1 no rank 2620507 1 0 690 0 1 712710 species Tannerella sp. oral taxon HOT-286 690 Prevotellaceae 21529 0 5 11 1 family 171552 Prevotella 21524 10 0 47 genus 838 1 Prevotella denticola 728 0 1 28129 species 589436 species 0 1 739 Prevotella fusca 1046 Prevotella ruminicola species 839 0 1 52227 species 0 1 1360 Prevotella dentalis Prevotella melaninogenica 974 1 0 28132 species 503 1 0 no rank 2638335 species 652716 0 1 503 Prevotella sp. oral taxon 299 14988 Prevotella intermedia species 28131 0 1 76123 species 0 1 487 Prevotella enoeca 1177574 species 0 1 652 Prevotella jejuni 1 family 171550 5 0 6 16448 Rikenellaceae Alistipes 16172 9 0 2 genus 239759 1 Alistipes finegoldii 16163 0 1 214856 species 0 2 2 1611681 genus 1 Mucinivorans 270 0 1 1433126 species Mucinivorans hirudinis 268 523 Paludibacteraceae 1 2005523 family 3 0 2 520 0 1 346096 genus 1 0 species 185300 Paludibacter propionicigenes 520 6 0 11 1 815 family Bacteroidaceae 172854 816 genus 1 8780 0 10 172848 Bacteroides Bacteroides heparinolyticus 6691 0 1 species 28113 6715 Bacteroides zoogleoformans species 28119 0 1 1 0 818 species Bacteroides thetaiotaomicron 30794 0 1 species 47678 Bacteroides caccae 14635 1 0 species 246787 Bacteroides cellulosilyticus 31435 28116 species 0 1 15063 Bacteroides ovatus Bacteroides fragilis 32140 0 1 817 species Bacteroides caecimuris 18077 0 1 species 1796613 0 1 species 290053 Bacteroides helcogenes 8518 Flavobacteriia 26960 13 0 135 117743 class 1 0 36 134 order 200644 1 Flavobacteriales 26947 192 1853230 family 0 1 0 1 332102 genus 192 Fluviicola taffensis 192 1 0 191579 species family 49546 1 96 0 169 17769 Flavobacteriaceae 5 0 15 genus 76831 1 Myroides 984 Myroides profundi 238 0 1 species 480520 354 Myroides odoratimimus 76832 species 1 0 377 2 0 2642485 no rank Myroides sp. A21 179 0 1 1583100 species 198 Myroides sp. ZB35 1458492 species 0 1 173 225842 genus 0 2 173 0 2 2644710 no rank Formosa sp. Hel1_33_131 84 0 1 1336794 species species 1336795 0 1 89 Formosa sp. Hel3_A1_48 genus 389486 0 1 129 129 no rank 2648869 1 0 0 1 species 1453352 Sediminicola sp. YIK13 129 486 61432 no rank 2 0 1150389 species 0 1 278 Flavobacteriaceae bacterium UJ101 species 531844 0 1 208 Flavobacteriaceae bacterium 3519-10 207 112040 genus 1 0 Zobellia galactanivorans 207 1 0 species 63186 0 1 216431 genus 166 313588 species 1 0 166 Croceibacter atlanticus 349 2 0 286104 genus no rank 2615021 2 0 349 Winogradskyella sp. PG-2 184 0 1 species 754409 Winogradskyella sp. J14-2 165 0 1 1936080 species 237 genus 1 9 0 1 2492 Flavobacterium Flavobacterium crassostreae 161 1 0 1763534 species Flavobacterium columnare 558 0 1 996 species 0 1 312277 species Flavobacterium indicum 290 Flavobacterium gilvum 329 1 0 1492737 species species 986 0 1 584 Flavobacterium johnsoniae species 96345 0 1 181 Flavobacterium psychrophilum Flavobacterium commune 239 0 1 species 1306519 0 1 species 55197 Flavobacterium branchiophilum 149 260 genus 1649495 1 0 1 0 2622645 no rank 260 1 0 1936081 species Seonamhaeicola sp. S2-3 260 287 genus 358023 0 1 1622118 species 0 1 287 Lutibacter profundi 1 291183 genus 1 0 4 612 Lacinutrix 366 0 2 no rank 2647285 191 Lacinutrix sp. 5H-3-7-4 species 983544 1 0 0 1 species 2057808 Lacinutrix sp. Bg11-31 175 0 1 species 1486034 Lacinutrix venerupis 245 308 1 0 2700084 genus 1 0 species 1850246 Lutibacter sp. LPB0138 308 244 1209327 genus 0 1 Flavivirga eckloniae 244 0 1 1803846 species Zunongwangia 260 2 0 3 genus 417127 1 398743 species 0 1 257 Zunongwangia profunda 181 0 1 genus 153265 0 1 species 101385 Aequorivita sublithincola 181 52959 genus 0 5 1553 319 Polaribacter vadi species 1774273 0 1 0 3 no rank 196858 871 352 Polaribacter sp. ALD11 2058137 species 1 0 0 1 species 1529069 Polaribacter sp. BM10 303 216 Polaribacter sp. MED152 species 313598 1 0 Polaribacter reichenbachii 363 0 1 996801 species 0 4 genus 363408 563 species 319236 0 1 169 Nonlabens sediminis Nonlabens dokdonensis 128 1 0 species 328515 266 no rank 2615035 2 0 0 1 1476901 species Nonlabens sp. MIC269 109 157 Nonlabens sp. MB-3u-79 2058134 species 1 0 0 3 4 104264 genus 1 Cellulophaga 801 0 1 59600 species Cellulophaga algicola 246 species 979 1 0 217 Cellulophaga lytica 76594 species 0 1 335 Cellulophaga baltica 1 genus 1016 0 18 15 2385 Capnocytophaga 109 Capnocytophaga leadbetteri 327575 species 1 0 947 6 0 no rank 2640652 176 Capnocytophaga sp. ChDC OS43 species 209053 0 1 0 1 1945658 species Capnocytophaga sp. H4358 150 Capnocytophaga sp. oral taxon 878 154 1 0 1316596 species 0 1 1705617 species Capnocytophaga sp. oral taxon 323 153 155 Capnocytophaga sp. oral taxon 864 1316593 species 0 1 1945657 species 0 1 159 Capnocytophaga sp. H2931 species 28189 0 1 131 Capnocytophaga cynodegmi 142 Capnocytophaga ochracea 1018 species 0 1 Capnocytophaga haemolytica 131 0 1 species 45243 Capnocytophaga stomatis 217 0 1 species 1848904 Capnocytophaga sputigena 300 1 0 1019 species 165 Capnocytophaga gingivalis species 1017 0 1 Capnocytophaga canimorsus 225 1 0 28188 species 219 1 0 393005 genus 219 Tamlana sp. UJ94 species 2069432 0 1 257 genus 1518147 0 1 1790137 species 1 0 257 Wenyingzhuangia fucanilytica 1 genus 104267 0 1 5 1020 Tenacibaculum 0 1 species 107401 Tenacibaculum maritimum 205 219 Tenacibaculum todarodis 1850252 species 1 0 584609 species 0 1 323 Tenacibaculum jejuense 1 0 species 669041 Tenacibaculum dicentrarchi 272 1 0 261827 genus 254 Algibacter alginicilyticus 254 0 1 1736674 species Gramella 688 0 7 5 1 292691 genus Gramella sp. SH35 216 1 0 2126553 species 0 1 1486245 species Gramella flava 173 species 1913577 0 1 155 Gramella sp. LPB0144 Gramella forsetii 137 1 0 species 411153 177 336276 genus 0 1 177 0 1 no rank 2615019 177 Olleya sp. Bg11-27 2058135 species 1 0 405 Dokdonia 1 genus 326319 0 4 3 280 2 0 2615033 no rank 313590 species 1 0 116 Dokdonia sp. MED134 0 1 species 983548 Dokdonia sp. 4H-3-7-5 164 Dokdonia donghaensis 122 0 1 species 326320 Maribacter 769 0 5 2 252356 genus 1 2615042 no rank 3 0 587 species 1644130 0 1 171 Maribacter sp. 1_2014MBL_MicDiv 0 1 species 313603 Maribacter sp. HTCC2170 201 Maribacter sp. T28 215 0 1 1836467 species Maribacter cobaltidurans 180 1 0 1178778 species genus 83612 0 1 153 0 1 species 57029 Psychroflexus torquis 153 351 111500 genus 0 2 103 Muricauda lutaonensis species 516051 0 1 species 111501 0 1 248 Muricauda ruestringensis genus 1176327 1 0 124 0 1 2636237 no rank 124 124 Aureitalea sp. RR4-38 species 2094025 0 1 genus 1204360 0 1 199 Siansivirga zeaxanthinifaciens 199 0 1 762954 species 0 1 2 252306 genus 1 Robiginitalea 166 252307 species 0 1 165 Robiginitalea biformata 178469 genus 0 1 170 species 616991 0 1 170 Arenibacter algicola 1 143222 genus 0 1 2 208 Salegentibacter 207 1 0 2633436 no rank 207 Salegentibacter sp. T436 species 1729720 1 0 1 0 family 1333713 121 121 1 0 genus 267986 121 Owenweeksia hongkongensis 253245 species 1 0 2 0 no rank 313602 214 153 genus 336809 0 1 1 0 species 336810 Candidatus Sulcia muelleri 153 genus 1940138 1 0 61 0 1 1415657 species Candidatus Walczuchella monophlebidarum 61 812 Blattabacteriaceae family 39782 1 1 0 10 811 Blattabacterium genus 34098 1 0 9 8 110 Blattabacterium cuenoti 1653831 species 1 0 Blattabacterium punctulatus 111 0 1 164514 species 2647581 no rank 0 6 582 367488 species 0 1 46 Blattabacterium sp. (Periplaneta americana) 172 Blattabacterium sp. (Blattella germanica) species 624186 1 0 0 1 species 39768 Blattabacterium sp. (Mastotermes darwiniensis) 94 61 Blattabacterium sp. (Blatta orientalis) 367806 species 1 0 91 Blattabacterium sp. (Blaberus giganteus) 1186051 species 0 1 Blattabacterium sp. (Nauphoeta cinerea) 118 0 1 species 1316444 7688 22 0 2762318 family 404 Riemerella 1 34084 genus 2 0 2 402 Riemerella anatipestifer 34085 species 0 1 1013 genus 1 0 2 3 128 Weeksella Weeksella virosa 125 0 1 1014 species 2874 10 0 no rank 2782232 302 2782228 genus 0 1 species 536441 0 1 302 Chryseobacterium taklimakanense Chryseobacterium 2572 0 17 9 1 genus 59732 Chryseobacterium camelliae 265 0 1 species 1265445 species 1685010 0 1 286 Chryseobacterium glaciei 0 3 no rank 2593645 941 Chryseobacterium sp. StRB126 305 0 1 species 878220 274 Chryseobacterium sp. IHB B 17019 1721091 species 0 1 Chryseobacterium sp. T16E-39 362 0 1 2015076 species 560 Chryseobacterium indologenes species 253 0 1 species 1324352 0 1 259 Chryseobacterium gallinarum 244 Chryseobacterium piperi 558152 species 1 0 2371 Ornithobacterium 1 28250 genus 14 0 2 28251 species 0 1 2357 Ornithobacterium rhinotracheale 1 308865 genus 0 6 6 1911 Elizabethkingia 172045 species 0 1 382 Elizabethkingia miricola 1 0 species 1117645 Elizabethkingia anophelis 671 0 1 1756149 species Elizabethkingia genomosp. 3 268 species 238 0 1 312 Elizabethkingia meningoseptica species 1756150 0 1 272 Elizabethkingia genomosp. 4 115 family 1755828 0 1 0 1 1755829 genus 115 species 242600 0 1 115 Ichthyobacterium seriolicida Cytophagia 9378 51 0 21 768503 class 1 Cytophagales 9357 56 0 50 1 order 768507 331 Persicobacteraceae 1 family 1853234 3 0 2 328 0 1 59740 genus 1 0 no rank 2664020 328 0 1 species 1085624 Persicobacter sp. JZB09 328 1 89373 family 14 0 5 2298 Cytophagaceae 175 861914 genus 1 0 175 0 1 2620963 no rank 0 1 1834519 species Fibrella sp. ES10-3-2-2 175 1 genus 978 2 0 2 232 Cytophaga 0 1 985 species Cytophaga hutchinsonii 230 0 2 4 319458 genus 1 Leadbetterella 191 Leadbetterella byssophila 187 0 1 316068 species 6 0 8 1 genus 107 Spirosoma 1120 0 1 species 1211326 Spirosoma aerolatum 206 0 1 species 2057025 Spirosoma sp. HA7 235 Spirosoma montaniterrae 246 0 1 species 1178516 Spirosoma rigui 242 0 1 564064 species 0 1 1379870 species Spirosoma radiotolerans 183 1 0 genus 120831 378 Dyadobacter fermentans 378 0 1 94254 species 0 1 105 genus 197 197 Runella slithyformis 106 species 0 1 148 family 1501348 2 0 0 1 genus 273135 82 82 1 0 no rank 2641185 249402 species 0 1 82 Cardinium endosymbiont of Encarsia pergandiella 0 1 281119 genus 66 66 Candidatus Amoebophilus asiaticus species 281120 1 0 Hymenobacteraceae 4372 16 0 23 family 1853232 1 Hymenobacter 3085 35 0 8 89966 genus 1 491 Hymenobacter sedentarius 1411621 species 0 1 2161 2615202 no rank 5 0 species 1484118 0 1 539 Hymenobacter sp. PAMC 26628 0 1 species 1385663 Hymenobacter sp. DG25A 286 0 1 species 1385664 Hymenobacter sp. DG25B 370 1484116 species 1 0 418 Hymenobacter sp. PAMC 26554 548 Hymenobacter sp. APR13 species 1356852 1 0 1 0 species 1446467 Hymenobacter swuensis 398 0 2 3 1 genus 323449 Pontibacter 582 388950 species 0 1 339 Pontibacter akesuensis species 400092 0 1 241 Pontibacter korlensis 682 Rufibacter genus 1379908 1 5 0 4 no rank 2639626 0 2 459 236 Rufibacter sp. DG31D species 1379910 0 1 Rufibacter sp. DG15C 223 0 1 1379909 species 0 1 species 512763 Rufibacter tibetensis 218 1 family 563798 0 4 8 876 Cyclobacteriaceae 0 1 2 genus 390846 1 Echinicola 232 Echinicola vietnamensis 231 0 1 390884 species 148 genus 232244 1 0 148 Belliella baltica 232259 species 1 0 112 genus 246875 0 1 1 0 1727163 species Algoriphagus sp. M8-2 112 380 Cyclobacterium 1 68288 genus 0 4 3 species 104 0 1 202 Cyclobacterium marinum 174 Cyclobacterium amurskyense species 320787 0 1 230 0 2 2762301 family 230 Marivirga 869806 genus 1 2 0 2 species 1006 0 1 228 Marivirga tractuosa 200667 family 1 6 0 3 735 Flammeovirgaceae 380 1 0 59739 genus 380 2637820 no rank 0 1 380 Flammeovirga sp. MY04 1191459 species 1 0 349 340671 no rank 1 0 349 Flammeovirgaceae bacterium 311 1257021 species 0 1 1 1937968 family 0 2 1 311 Bernardetiaceae 1 0 1937972 genus 310 310 Bernardetia litoralis 999 species 0 1 0 2 23 1 117747 class Sphingobacteriia 3742 1 200666 order 0 22 12 3740 Sphingobacteriales 3728 Sphingobacteriaceae family 84566 1 0 21 9 4 0 4 1 423349 genus Mucilaginibacter 629 Mucilaginibacter sp. BJC16-A31 226 0 1 1234841 species 1 0 1550579 species Mucilaginibacter gotjawali 192 0 1 2617802 no rank 207 Mucilaginibacter sp. PAMC 26640 207 0 1 species 1300914 genus 84567 1 6 0 2 1245 Pedobacter 984 species 0 1 240 Pedobacter heparinus Pedobacter ginsengisoli 204 0 1 species 363852 species 188932 0 1 311 Pedobacter cryoconitis Pedobacter steynii 239 0 1 species 430522 2628915 no rank 1 0 249 0 1 1727164 species Pedobacter sp. PACM 27299 249 0 2 2 1 929509 genus Solitalea 259 257 Solitalea canadensis species 995 0 1 genus 1649482 0 1 274 species 151895 0 1 274 Pseudopedobacter saltans 1 28453 genus 0 6 6 1070 Sphingobacterium 866 2609468 no rank 0 4 Sphingobacterium sp. 21 201 1 0 743722 species 0 1 2003121 species Sphingobacterium sp. G1-14 221 255 Sphingobacterium sp. ML3W species 1538644 0 1 species 1933220 0 1 189 Sphingobacterium sp. B29 0 1 1010 species Sphingobacterium mizutaii 198 242 1 0 no rank 84568 species 1986952 0 1 242 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 Chitinophagia 2102 0 13 1 1 class 1853228 1 1853229 order 12 0 12 2101 Chitinophagales Chitinophagaceae 2089 18 0 11 563835 family 1 2 0 1 1 1769012 genus Arachidicoccus 246 no rank 2636138 1 0 245 0 1 species 1850526 Arachidicoccus sp. BS20 245 649460 genus 0 1 351 1 0 species 477680 Filimonas lacunae 351 1 genus 79328 2 0 3 525 Chitinophaga 0 1 79329 species Chitinophaga pinensis 312 2029983 species 0 1 211 Chitinophagaceae bacterium 13 180 398041 genus 1 0 0 1 species 1492898 Flavisolibacter tropicus 180 genus 354354 1 0 300 Niastella koreensis 300 0 1 354356 species genus 379899 0 2 469 Niabella ginsenosidivorans 207 0 1 1176587 species Niabella soli 262 1 0 446683 species 373 0 4 1937959 class Saprospirales 373 0 1 4 1 order 1936988 family 1937961 2 0 242 2349 genus 1 1 0 2 242 Haliscomenobacter 241 Haliscomenobacter hydrossis species 2350 0 1 130 0 1 family 89374 1007 genus 1 0 130 1008 species 0 1 130 Saprospira grandis 4 0 1134404 phylum 511 511 Ignavibacteria 1 class 795747 0 3 4 3 0 1 795748 order 1 Ignavibacteriales 508 family 1334117 0 1 232 232 1134403 genus 0 1 232 Melioribacter roseus species 1134405 0 1 275 family 795749 1 0 genus 795750 0 1 275 275 Ignavibacterium album species 591197 0 1 456828 phylum 2 0 109 109 Candidatus Cloacimonas 1 genus 456826 1 0 2 0 1 456827 species Candidatus Cloacimonas acidaminovorans 108 142182 phylum 8 0 1011 Gemmatimonadetes 1011 7 0 8 1 219685 class 0 25 7 1 219686 order Gemmatimonadales 1004 0 3 6 219687 family 1 Gemmatimonadaceae 979 1 173479 genus 0 20 3 475 Gemmatimonas 173480 species 0 1 232 Gemmatimonas aurantiaca 1379270 species 0 1 223 Gemmatimonas phototrophica 0 2 4 genus 1706036 1 Gemmatirosa 501 861299 species 1 0 497 Gemmatirosa kalamazoonesis phylum 65842 5 0 498 Fibrobacteria 498 1 0 5 204430 class 1 218872 order 1 0 4 1 497 Fibrobacterales Fibrobacteraceae 496 0 2 3 204431 family 1 Fibrobacter 494 1 0 2 1 genus 832 0 1 species 833 Fibrobacter succinogenes 493 0 1670 1783272 clade 2970211 phylum 544448 1 102 0 1 17465 Tenericutes 1 31969 class 0 97 21 15739 Mollicutes Mycoplasmatales 5658 0 44 3 order 2085 1 43 0 16 2092 family 1 Mycoplasmataceae 5655 253 Ureaplasma genus 2129 1 0 3 1 127 Ureaplasma urealyticum species 2130 1 0 0 1 species 134821 Ureaplasma parvum 125 1788 12 0 genus 2767358 151 Mycoplasma agalactiae species 2110 0 1 2109 species 0 1 113 Mycoplasma synoviae 0 1 2094 species Mycoplasma arginini 153 220 Mycoplasma fermentans 2115 species 0 1 0 1 2112 species Mycoplasma bovigenitalium 98 0 1 171284 species Mycoplasma cynos 186 species 29553 0 1 137 Mycoplasma bovirhinis 208 Mycoplasma bovis 28903 species 1 0 Mycoplasma californicum 76 0 1 2113 species species 29555 0 1 186 Mycoplasma canis Mycoplasma pullorum 111 0 1 48003 species 2107 species 0 1 149 Mycoplasma pulmonis 3598 Mycoplasma 1 genus 2093 0 27 58 35 Mycoplasma pneumoniae 2104 species 0 1 Mycoplasma haemocanis 21 0 1 species 136241 230 Mycoplasma penetrans species 28227 1 0 975 species group 656088 0 3 0 1 species 2105 Mycoplasma leachii 249 Mycoplasma capricolum 282 1 0 species 2095 0 1 species 2102 Mycoplasma mycoides 444 Mycoplasma putrefaciens 214 1 0 2123 species species 2098 1 0 303 Mycoplasma hominis 50052 species 0 1 174 Mycoplasma crocodyli Mycoplasma parvum 54 0 1 984991 species 0 1 species 29554 Mycoplasma canadense 123 species 2097 0 1 57 Mycoplasma genitalium Mycoplasma hyopneumoniae 83 1 0 species 2099 158 no rank 2683645 0 1 0 1 1749074 species Mycoplasma sp. (ex Biomphalaria glabrata) 158 0 1 57372 species Mycoplasma suis 71 1 0 species 2100 Mycoplasma hyorhinis 175 0 1 species 2096 Mycoplasma gallisepticum 83 2118 species 0 1 146 Mycoplasma mobile 32 Mycoplasma haemofelis 29501 species 0 1 41 Mycoplasma ovis species 171632 0 1 52 Mycoplasma dispar 86660 species 0 1 259 Mycoplasma yeatsii 51365 species 0 1 species 2128 1 0 57 Mycoplasma flocculare Mycoplasma arthritidis 76 0 1 2111 species 1 0 45362 species Mycoplasma bovoculi 79 65123 species 1 0 42 Mycoplasma wenyonii Entomoplasmatales 7345 0 3 39 186328 order 1 33925 family 1 4 0 14 2238 Entomoplasmataceae 763 Entomoplasma 1 46238 genus 0 16 5 1 0 81459 species Entomoplasma melaleucae 280 91 Entomoplasma freundtii species 74700 0 1 Entomoplasma somnilux 222 0 1 species 215578 Entomoplasma luminosum 154 1 0 species 214888 1471 Mesoplasma 46239 genus 1 0 8 42 Mesoplasma tabanidae 126 0 1 219745 species 225999 species 0 1 147 Mesoplasma syrphidae 0 1 species 138853 Mesoplasma lactucae 308 2151 species 1 0 304 Mesoplasma florum species 216427 0 1 191 Mesoplasma chauliocola Mesoplasma coleopterae 181 0 1 324078 species species 2149 0 1 172 Mesoplasma entomophilum 0 12 24 1 family 2131 Spiroplasmataceae 5104 1 2132 genus 0 23 128 5092 Spiroplasma 129 Spiroplasma apis 2137 species 1 0 258 Spiroplasma cantharicola species 362837 0 1 species 216936 0 1 340 Spiroplasma diminutum species 216938 0 1 186 Spiroplasma helicoides 0 1 216934 species Spiroplasma corruscae 205 Spiroplasma syrphidicola 145 0 1 species 216945 270 Spiroplasma taiwanense species 2145 1 0 216946 species 0 1 277 Spiroplasma turonicum Spiroplasma atrichopogonis 176 1 0 1114980 species species 2139 0 1 245 Spiroplasma clarkii 0 1 species 216935 Spiroplasma culicicola 310 0 1 2133 species Spiroplasma citri 326 Spiroplasma mirum 176 0 1 2144 species 47834 species 0 1 298 Spiroplasma kunkelii 193 Spiroplasma monobiae 2136 species 0 1 0 1 216942 species Spiroplasma litorale 246 216933 species 0 1 136 Spiroplasma chrysopicola species 315358 0 1 210 Spiroplasma eriocheiris 216937 species 0 1 270 Spiroplasma floricola 426 2637901 no rank 2 0 1914410 species 0 1 213 Spiroplasma sp. NBRC 100390 213 Spiroplasma sp. TU-14 species 1898044 0 1 0 1 species 216944 Spiroplasma sabaudiense 142 2715 Acholeplasmatales 186329 order 1 0 13 2 Acholeplasmataceae 2713 0 27 12 1 2146 family 33926 genus 1 15 0 6 662 Candidatus Phytoplasma 1 0 85632 species group 152 Candidatus Phytoplasma australiense 152 0 1 species 59748 species group 85620 0 3 355 Aster yellows witches'-broom phytoplasma 112 0 1 229545 species Maize bushy stunt phytoplasma 111 0 1 species 202462 1 0 100379 species Onion yellows phytoplasma 132 140 1 0 species group 85630 1 0 37692 species Candidatus Phytoplasma mali 140 1 genus 2147 0 5 31 2024 Acholeplasma 2148 species 0 1 598 Acholeplasma laidlawii Acholeplasma brassicae 289 0 1 61635 species 35623 species 1 0 446 Acholeplasma oculi 660 Acholeplasma palmae species 38986 0 1 599 2 0 no rank 2799557 genus 1912503 1 0 1 2 599 Candidatus Izimaplasma 2624196 no rank 0 1 598 1 0 species 1541959 Candidatus Izimaplasma sp. HR1 598 1126 713063 no rank 2 0 Tenericutes bacterium MO-XQ 562 1 0 1911684 species 564 Tenericutes bacterium MZ-XQ species 1911683 0 1 104 no rank 1859062 2 0 7 0 2 1 262406 genus Thermobaculum 104 97 Thermobaculum terrenum species 166501 0 1 4317 200795 phylum 0 40 397 Thermomicrobia class 189775 1 0 8 8 263 4 0 subclass 85000 Sphaerobacterales 263 0 2 4 1 order 85001 261 suborder 255728 3 0 1 85002 family 0 3 1 261 Sphaerobacteraceae Sphaerobacter 260 2 0 9 1 2056 genus 251 Sphaerobacter thermophilus species 2057 0 1 189776 order 1 0 1 3 126 Thermomicrobiales 189777 family 1 2 0 1 125 Thermomicrobiaceae 0 1 499 genus 124 Thermomicrobium roseum 124 1 0 500 species 739 Ardenticatenia 1 class 1382928 5 0 12 Ardenticatenales 727 0 8 4 order 1382929 1 0 3 4 1 family 1382930 Ardenticatenaceae 719 Candidatus Promineofilum 715 2 0 8 1988031 genus 1 707 Candidatus Promineofilum breve 1806508 species 0 1 Dehalococcoidia 876 4 0 7 1 class 301297 329 Dehalogenimonas 1 670486 genus 3 0 6 species 1839801 0 1 184 Dehalogenimonas formicexedens 0 1 552810 species Dehalogenimonas lykanthroporepellens 139 543 Dehalococcoidales order 1202465 1 0 3 1 2 0 family 1202464 542 0 2 genus 61434 542 Dehalococcoides mccartyi 423 0 1 61435 species 119 237581 no rank 1 0 1522671 species 0 1 119 Dehalococcoides sp. UCH007 969 Anaerolineae class 292625 1 5 0 6 Anaerolineales 964 0 5 3 1 order 292629 Anaerolineaceae 961 0 4 4 1 292628 family 178 0 1 2019482 genus 178 Brevefilum fermentans 1986204 species 1 0 no rank 1324991 1 0 506 1889813 species 0 1 506 Anaerolineaceae bacterium oral taxon 439 0 1 genus 233189 273 0 1 species 167964 Anaerolinea thermophila 273 5 0 2 1 475962 class Caldilineae 364 362 Caldilineales 475963 order 1 4 0 1 family 475964 1 0 3 3 361 Caldilineaceae Caldilinea 358 7 0 2 genus 233191 1 351 Caldilinea aerophila 133453 species 0 1 Chloroflexia 972 9 0 4 32061 class 1 0 3 8 1 32064 order Chloroflexales 968 528 3 0 suborder 1508595 528 Roseiflexaceae 1508635 family 1 0 6 3 120961 genus 0 2 522 0 1 no rank 2609473 282 357808 species 1 0 282 Roseiflexus sp. RS-1 Roseiflexus castenholzii 240 0 1 120962 species suborder 1508594 4 0 437 437 4 0 1106 family 437 Chloroflexus 1 1107 genus 0 4 4 0 1 species 152260 Chloroflexus aggregans 113 0 160 2 1 1108 species Chloroflexus aurantiacus 320 0 1 480224 strain Chloroflexus sp. Y-400-fl 160 354983 Actinobacteria phylum 201174 1 0 636 22 272 1752188 no rank 0 4 0 1 1848255 species Actinobacteria bacterium IMCC25003 77 species 1848754 1 0 56 Actinobacteria bacterium IMCC19121 63 Actinobacteria bacterium IMCC26077 species 1848755 0 1 76 Actinobacteria bacterium IMCC26103 species 1848756 0 1 456 0 4 1497346 class 1 order 588673 4 0 11 456 Solirubrobacterales 0 3 4 320583 family 1 Conexibacteraceae 445 Conexibacter 441 0 10 2 1 191494 genus 0 1 species 191495 Conexibacter woesei 431 316584 Actinobacteria 1 1760 class 0 1793 583 138 0 215 85006 order 1 Micrococcales 23019 0 11 9 85017 family 1 Promicromonosporaceae 1422 Isoptericola 545 0 3 8 1 genus 254250 0 1 species 139208 Isoptericola variabilis 221 316 Isoptericola dokdonensis 372663 species 0 1 0 6 2 186188 genus 1 Xylanimonas 367 0 1 species 186189 Xylanimonas cellulosilytica 361 157920 genus 1 3 0 3 499 Cellulosimicrobium 1 0 2624466 no rank 201 Cellulosimicrobium sp. TH-20 201 1 0 species 1980001 species 1710 0 1 295 Cellulosimicrobium cellulans 1 125316 family 0 3 4 322 Beutenbergiaceae 318 Beutenbergia 84756 genus 1 0 23 2 295 Beutenbergia cavernae 84757 species 1 0 Micrococcaceae 8181 0 227 39 family 1268 1 3 0 2 genus 1742989 1 Glutamicibacter 396 0 1 256701 species Glutamicibacter arilaitensis 393 258 Neomicrococcus 1868332 genus 1 0 2 5 0 1 556325 species Neomicrococcus aestuarii 253 786 Kocuria genus 57493 1 0 4 19 0 1 species 71999 Kocuria palustris 203 0 1 species 72000 Kocuria rhizophila 285 446860 species 0 1 279 Kocuria flava 0 1 1645 genus 126 Renibacterium salmoninarum 126 0 1 species 1646 3 0 2 genus 32207 1 Rothia 559 Rothia dentocariosa 166 0 1 species 2047 species 43675 0 1 391 Rothia mucilaginosa 165 1 0 genus 2078575 165 Arthrobacter sp. IHBB 11108 species 1618207 0 1 872 Pseudarthrobacter 1 genus 1742993 0 4 5 Pseudarthrobacter chlorophenolicus 335 0 1 species 85085 0 1 121292 species Pseudarthrobacter sulfonivorans 268 361575 species 0 1 264 Pseudarthrobacter phenanthrenivorans Micrococcus 247 4 0 2 genus 1269 1 1270 species 0 1 243 Micrococcus luteus 4091 Arthrobacter 1 1663 genus 0 15 105 3143 no rank 235627 0 12 0 1 species 1357915 Arthrobacter sp. QXT-31 269 228 Arthrobacter sp. ERGS1:01 1704044 species 1 0 183 Arthrobacter sp. Rue61a species 1118963 0 1 1 0 290399 species Arthrobacter sp. FB24 314 0 1 1806905 species Arthrobacter sp. ZXY-2 235 181 Arthrobacter sp. ATCC 21022 1771959 species 0 1 species 2020486 1 0 231 Arthrobacter sp. YN Arthrobacter sp. PGP41 223 1 0 2079227 species 1690248 species 1 0 383 Arthrobacter sp. LS16 315 Arthrobacter sp. U41 species 1849032 0 1 Arthrobacter sp. PAMC 25486 216 0 1 1494608 species Arthrobacter sp. YC-RL1 365 0 1 species 1652545 Arthrobacter alpinus 523 0 1 species 656366 species 37928 0 1 320 Arthrobacter crystallopoietes 251 Sinomonas 596707 genus 1 2 0 2 Sinomonas atrocyanea 249 0 1 species 37927 203 Paenarthrobacter genus 1742992 1 0 2 2 201 Paenarthrobacter aurescens 43663 species 0 1 85022 family 2 0 60 2 0 1 1 genus 43673 Jonesia 60 species 43674 0 1 59 Jonesia denitrificans 747 Dermacoccaceae family 145357 1 0 7 8 0 2 6 1 genus 745364 Luteipulveratus 241 235 Luteipulveratus mongoliensis species 571913 0 1 57495 genus 1 0 1 2 229 Dermacoccus 228 Dermacoccus nishinomiyaensis 1274 species 1 0 3 0 2 genus 57499 1 Kytococcus 269 0 1 species 1276 Kytococcus sedentarius 266 7226 Microbacteriaceae 1 85023 family 43 0 95 genus 33877 0 1 235 Agromyces aureus 235 0 1 453304 species 0 1 337004 genus 133 0 1 species 279828 Microcella alkaliphila 133 3 0 4 genus 33886 1 Rathayibacter 264 33888 species 0 1 189 Rathayibacter tritici Rathayibacter toxicus 71 1 0 species 145458 genus 33882 1 59 0 14 2686 Microbacterium Microbacterium chocolatum 127 0 1 84292 species 234 Microbacterium aurum 36805 species 0 1 Microbacterium paludicola 216 1 0 300019 species 290 Microbacterium hominis species 162426 0 1 0 1 2033 species Microbacterium testaceum 142 1618 8 0 2609290 no rank 0 1 1938334 species Microbacterium sp. TPU 3598 180 Microbacterium sp. 1.5R 179 1 0 1916917 species 151 Microbacterium sp. CGR1 species 1696072 0 1 Microbacterium sp. No. 7 198 0 1 species 1714373 Microbacterium sp. PAMC 28756 271 0 1 species 1795053 1 0 species 367477 Microbacterium sp. XT11 168 244 Microbacterium sp. BH-3-3-3 species 1906742 0 1 227 Microbacterium sp. str. 'China' 2103230 species 1 0 0 38 6 1 1573 genus Clavibacter 1056 Clavibacter michiganensis 1018 5 0 175 species 28447 1 181 Clavibacter insidiosus 33014 subspecies 0 1 Clavibacter nebraskensis 198 0 1 31963 subspecies 207 Clavibacter capsici subspecies 1874630 0 1 31964 subspecies 0 1 257 Clavibacter sepedonicus 592 Curtobacterium genus 2034 1 0 23 4 Curtobacterium pusillum 166 0 1 69373 species 257496 no rank 2 0 403 0 1 1561023 species Curtobacterium sp. MR_MD2014 216 species 1905847 0 1 187 Curtobacterium sp. BH-2-1-1 1 0 genus 1705353 81 Aurantimicrobium minutum 81 0 1 species 708131 267 447237 genus 1 0 267 0 1 no rank 2626248 267 Frondihabitans sp. PAMC 28766 species 1795630 1 0 518733 genus 1 0 2 5 282 Microterricola 277 Microterricola viridarii species 412690 0 1 219 1759331 genus 1 0 219 Cnuibacter physcomitrellae 1619308 species 0 1 48 0 1 1434032 genus 48 Pontimonas salivibrio 1159327 species 0 1 137 2 0 1655488 no rank 137 0 2 1655489 clade 137 0 2 genus 529883 0 1 species 529884 Rhodoluna lacicola 75 Candidatus Rhodoluna planktonica 62 1 0 535712 species 639 Cryobacterium 69578 genus 1 4 0 3 2649013 no rank 1 0 332 Cryobacterium sp. LW097 332 0 1 species 1978566 Cryobacterium arcticum 303 0 1 species 670052 492 Leifsonia genus 110932 1 0 5 2 Leifsonia xyli 487 0 1 species 1575 933 Cellulomonadaceae 85016 family 1 0 6 3 genus 1707 1 0 5 20 930 Cellulomonas Cellulomonas fimi 295 1 0 1708 species 179 0 1 2620175 no rank 2003551 species 0 1 179 Cellulomonas sp. PSBB021 280 Cellulomonas flavigena 1711 species 0 1 species 11 0 1 156 Cellulomonas gilvus Brevibacteriaceae 473 6 0 3 1 family 85019 2 0 8 1696 genus 1 Brevibacterium 467 1 0 1703 species Brevibacterium linens 459 577468 no rank 1 0 49 49 0 1 genus 2038 0 1 species 2039 Tropheryma whipplei 49 10 0 9 85021 family 1 Intrasporangiaceae 1052 Intrasporangium 150 3 0 2 53357 genus 1 147 Intrasporangium calvum 53358 species 0 1 1 265976 genus 0 2 4 299 Serinicoccus Serinicoccus sp. JLT9 295 1 0 1758689 species Janibacter 224 0 11 2 53457 genus 1 857417 species 1 0 213 Janibacter indicus 369 Arsenicicoccus 1 genus 267408 2 0 2 367 1 0 2663846 no rank 0 1 species 1658671 Arsenicicoccus sp. oral taxon 190 367 Dermabacteraceae 1989 9 0 22 1 85020 family 102 1 0 genus 472568 0 1 472569 species Devriesea agamarum 102 111 36739 genus 0 1 111 Dermabacter vaginalis 1630135 species 1 0 43668 genus 1 34 0 6 1754 Brachybacterium 2017485 species 1 0 344 Brachybacterium sp. VR2415 1 0 43669 species Brachybacterium faecium 353 321 0 1 2623841 no rank 321 Brachybacterium sp. P6-10-X1 1903186 species 1 0 354 Brachybacterium sp. VM2412 2017484 species 0 1 1331682 species 0 1 348 Brachybacterium ginsengisoli Sanguibacteraceae 239 0 3 3 1 145360 family Sanguibacter 236 0 8 2 genus 60919 1 species 60920 1 0 228 Sanguibacter keddieii 1 85018 family 3 0 2 111 Dermatophilaceae 0 2 2 1 1862 genus Dermatophilus 109 107 Dermatophilus congolensis 1863 species 1 0 1 85004 order 0 58 25 190817 Bifidobacteriales 190759 Bifidobacteriaceae family 31953 1 1625 0 24 0 296 19 1 1678 genus Bifidobacterium 188256 475 Bifidobacterium choerinum species 35760 0 1 Bifidobacterium scardovii 906 0 1 158787 species Bifidobacterium adolescentis 14578 0 1 1680 species 589 Bifidobacterium animalis 28025 species 1 0 1681 species 0 1 8984 Bifidobacterium bifidum 1 0 1685 species Bifidobacterium breve 7924 238 Bifidobacterium indicum 1691 species 1 0 0 1 638619 species Bifidobacterium actinocoloniiforme 356 0 1 species 1694 Bifidobacterium pseudolongum 733 997 Bifidobacterium thermophilum species 33905 0 1 Bifidobacterium pseudocatenulatum 81581 0 1 28026 species 1683 species 1 0 2013 Bifidobacterium angulatum 0 1 species 216816 Bifidobacterium longum 34314 32475 Bifidobacterium catenulatum 1 species 1686 2 0 11120 Bifidobacterium kashiwanohense 21355 0 1 subspecies 630129 Bifidobacterium coryneforme 240 0 1 species 1687 1689 species 1 0 1139 Bifidobacterium dentium species 1684 1 0 418 Bifidobacterium asteroides Parascardovia 329 0 2 1 1 196082 genus Parascardovia denticolens 328 0 1 species 78258 1 0 2701 genus 427 2702 species 0 1 427 Gardnerella vaginalis 122 0 1 196081 genus 122 Scardovia inopinata species 78259 0 1 0 3 order 1643684 446 Nakamurellaceae 446 0 3 13 1 family 85031 1 genus 53460 2 0 2 433 Nakamurella 431 Nakamurella multipartita 53461 species 0 1 1 order 622452 0 1 3 383 Kineosporiales 1 family 83778 2 0 3 382 Kineosporiaceae 0 1 genus 33981 379 131568 species 1 0 379 Kineococcus radiotolerans 3720 Streptosporangiales 1 order 85012 0 24 15 1611 Streptosporangiaceae family 2004 1 0 16 5 1 genus 2000 11 0 2 704 Streptosporangium Streptosporangium roseum 693 0 1 species 2001 Nonomuraea 891 11 0 2 1 83681 genus 880 1 0 no rank 2593643 Nonomuraea sp. ATCC 55076 880 0 1 1909395 species 25 0 6 1 family 83676 Nocardiopsaceae 1459 Nocardiopsis 1208 4 0 25 1 genus 2013 Nocardiopsis gilva 372 0 1 species 280236 0 1 species 2014 Nocardiopsis dassonvillei 512 53437 species 0 1 299 Nocardiopsis alba 226 genus 83677 0 1 226 Thermobifida fusca 2021 species 1 0 3 0 2 2012 family 1 Thermomonosporaceae 626 624 Thermomonospora 1 2019 genus 2 0 17 Thermomonospora curvata 607 0 1 2020 species 85008 order 1 0 8 19 5493 Micromonosporales 5485 Micromonosporaceae 1 family 28056 59 0 18 6 0 46 genus 1865 1 Actinoplanes 2392 1 0 species 1866 Actinoplanes missouriensis 419 2626549 no rank 3 0 1397 432 Actinoplanes sp. SE50/110 134676 species 0 1 2033844 species 0 1 432 Actinoplanes sp. SE50 Actinoplanes sp. N902-109 533 0 1 species 649831 0 1 196914 species Actinoplanes friuliensis 530 0 4 35 genus 673534 1 Plantactinospora 1269 1234 2631981 no rank 0 3 2108470 species 0 1 463 Plantactinospora sp. BC1 Plantactinospora sp. BB1 382 0 1 species 2071627 389 Plantactinospora sp. KBS50 species 2024580 0 1 168694 genus 1 0 3 9 488 Salinispora 0 1 168695 species Salinispora tropica 229 species 168697 0 1 250 Salinispora arenicola Micromonospora 1277 29 0 4 genus 1873 1 species 1003110 1 0 310 Verrucosispora maris Micromonospora aurantiaca 433 0 1 47850 species 0 1 no rank 2617518 505 Micromonospora sp. L5 505 1 0 648999 species 0 4 2 85014 order 1 Glycomycetales 443 family 85034 1 0 3 18 441 Glycomycetaceae 283810 genus 1 0 3 2 423 Stackebrandtia Stackebrandtia nassauensis 420 0 1 283811 species Actinopolysporales 228 1 0 4 order 622450 1 0 6 3 622451 family 1 Actinopolysporaceae 227 221 Actinopolyspora genus 1849 1 0 6 2 Actinopolyspora erythraea 215 1 0 species 414996 82 0 47 85011 order 1 Streptomycetales 31810 0 81 179 family 2062 1 Streptomycetaceae 31763 Streptomyces 29657 75 0 1118 1 genus 1883 species 1935 0 1 301 Streptomyces violaceoruber 207 Streptomyces pratensis 1169025 species 1 0 362257 species 0 1 418 Streptomyces vietnamensis 54571 species 0 1 651 Streptomyces venezuelae Streptomyces clavuligerus 326 1 0 species 1901 Streptomyces hygroscopicus 930 0 1 species 1912 1 0 2049881 species Streptomyces sp. XZHG99 297 393 Streptomyces gilvosporeus species 553510 0 1 693 0 2 1477431 species group species 1902 0 1 351 Streptomyces coelicolor 342 Streptomyces sampsonii 42239 species 0 1 441 Streptomyces violaceusniger species 68280 0 1 372 Streptomyces griseochromogenes species 68214 1 0 species 1969 0 1 379 Streptomyces chartreusis 0 1 species 1038928 Streptomyces xinghaiensis 288 1 0 species 1907 Streptomyces glaucescens 446 265 Streptomyces fulvissimus 68202 species 0 1 Streptomyces ambofaciens 315 0 1 1889 species 317 Streptomyces alboflavus 67267 species 0 1 Streptomyces puniciscabiei 388 1 0 164348 species 311 Streptomyces collinus species 42684 1 0 1 0 species 1783515 Streptomyces sp. S10(2016) 342 1 0 285473 species Streptomyces rubrolavendulae 312 Streptomyces leeuwenhoekii 377 1 0 species 1437453 371 Streptomyces alfalfae species 1642299 1 0 1950 species 1 0 299 Streptomyces peucetius 0 1 species 146923 Streptomyces parvulus 384 1 0 1926 species Streptomyces reticuli 350 species 1888 0 1 728 Streptomyces albus 0 1 408015 species Streptomyces xiamenensis 389 species 68249 0 1 671 Streptomyces pactum species 193462 0 1 298 Streptomyces niveus 380 Streptomyces cyaneogriseus 68192 species 0 1 335 Streptomyces pristinaespiralis 38300 species 0 1 963 Streptomyces lydicus species 47763 0 1 0 1 1355015 species Streptomyces pluripotens 273 species group 629295 2 0 575 1 0 1482558 species subgroup 238 1 0 species 1908 Streptomyces globisporus 238 337 0 1 1482596 species subgroup species 1911 0 1 337 Streptomyces griseus 8698 24 0 2593676 no rank 0 1 2059884 species Streptomyces sp. CMB-StM0423 505 301 Streptomyces sp. fd1-xmd 1812480 species 0 1 354 Streptomyces sp. Sge12 species 1972846 0 1 1 0 species 2094021 Streptomyces sp. WAC00288 292 206662 species 0 1 407 Streptomyces sp. FR-008 Streptomyces sp. CCM_MD2014 366 1 0 1561022 species species 1849967 0 1 354 Streptomyces sp. SAT1 0 1 species 862751 Streptomyces sp. SirexAA-E 274 species 1262452 0 1 493 Streptomyces sp. 769 0 1 species 234612 Streptomyces sp. TN58 320 species 1725411 1 0 426 Streptomyces sp. CdTB01 1837283 species 0 1 280 Streptomyces sp. S8 375 Streptomyces sp. Mg1 465541 species 0 1 Streptomyces sp. CFMR 7 299 0 1 species 1649184 0 1 2135430 species Streptomyces sp. P3 426 Streptomyces sp. MOE7 338 0 1 1961713 species Streptomyces sp. 4F 286 0 1 species 1751294 Streptomyces sp. CLI2509 306 1 0 species 1984801 274 Streptomyces sp. PAMC 26508 1265601 species 0 1 441 Streptomyces sp. RTd22 1841249 species 0 1 species 1661694 0 1 273 Streptomyces sp. Tue 6075 species 1964449 0 1 347 Streptomyces sp. 3211 Streptomyces sp. CNQ-509 456 0 1 species 444103 0 1 1495638 species Streptomyces sp. M56 505 0 1 29303 species Streptomyces cattleya 418 491 Streptomyces bingchenggensis 379067 species 0 1 Streptomyces formicae 340 1 0 species 1616117 0 1 1930 species Streptomyces scabiei 418 Streptomyces albireticuli 348 1 0 species 1940 372 Streptomyces noursei species 1971 0 1 Streptomyces autolyticus 381 1 0 species 75293 1915 species 0 1 411 Streptomyces lincolnensis Streptomyces lavendulae 337 0 1 species 1914 Streptomyces malaysiensis 388 0 1 92644 species 0 1 1916 species Streptomyces lividans 360 Streptomyces avermitilis 369 0 1 species 33903 0 1 species 68570 Streptomyces albulus 423 Kitasatospora 1927 33 0 5 genus 2063 1 Kitasatospora setae 573 0 1 2066 species no rank 2633591 0 1 524 Kitasatospora sp. MMS16-BH015 524 0 1 2018025 species 0 1 species 68173 Kitasatospora albolonga 379 1894 species 0 1 418 Kitasatospora aureofaciens 8 0 4 1 1643682 order Geodermatophilales 1089 85030 family 1 7 0 27 1085 Geodermatophilaceae Geodermatophilus 354 0 15 2 1 genus 1860 339 Geodermatophilus obscurus 1861 species 1 0 2 0 4 1 genus 38501 Blastococcus 238 species 138336 1 0 234 Blastococcus saxobsidens 466 Modestobacter 1 88138 genus 2 0 9 Modestobacter marinus 457 0 1 477641 species 134 order 1643683 0 3 Acidothermaceae 134 3 0 3 family 85032 1 Acidothermus 131 0 2 2 genus 28048 1 129 Acidothermus cellulolyticus 28049 species 1 0 Frankiales 1206 0 7 3 order 85013 1 0 30 6 1 family 74712 Frankiaceae 1203 1173 Frankia 1 genus 1854 23 0 5 0 1 1859 species Frankia alni 316 330 Frankia inefficax species 298654 1 0 106370 species 0 1 181 Frankia casuarinae 1 0 no rank 2632575 323 0 1 species 298653 Frankia sp. EAN1pec 323 0 38 32 85009 order 1 Propionibacteriales 6109 13 0 38 family 85015 1 Nocardioidaceae 2048 Aeromicrobium 239 11 0 2 genus 2040 1 2041 species 0 1 228 Aeromicrobium erythreum Kribbella 285 0 5 2 genus 182639 1 1 0 182640 species Kribbella flavida 280 Nocardioides 843 0 4 41 genus 1839 1 Nocardioides sp. 78 236 0 1 species 2045452 315 2615069 no rank 0 1 1 0 196162 species Nocardioides sp. JS614 315 251 Nocardioides dokdonensis 450734 species 1 0 Pimelobacter 368 0 10 2 1 genus 2044 358 Pimelobacter simplex 2045 species 0 1 0 2 3 1 116071 genus Micropruina 275 0 1 species 75385 Micropruina glycogenica 272 4023 Propionibacteriaceae family 31957 1 0 88 18 0 4 2 1 1912215 genus Acidipropionibacterium 443 Acidipropionibacterium acidipropionici 439 0 1 1748 species genus 2801844 1 0 198 species 1750 1 0 198 Pseudopropionibacterium propionicum 1 0 genus 203133 310 no rank 2633994 0 1 310 species 1871034 0 1 310 Propionimicrobium sp. Marseille-P3275 genus 29404 1 0 238 29405 species 0 1 238 Microlunatus phosphovorus Tessaracoccus 1322 0 7 5 1 genus 72763 no rank 2635419 1 0 364 1909732 species 0 1 364 Tessaracoccus sp. T2.5-30 1610493 species 0 1 282 Tessaracoccus flavus 399497 species 0 1 275 Tessaracoccus flavescens Tessaracoccus aquimaris 394 1 0 1332264 species 4 0 5 genus 1912216 1 Cutibacterium 766 Cutibacterium granulosum 171 0 1 species 33011 Cutibacterium avidum 373 0 1 species 33010 Cutibacterium acnes 217 0 1 1747 species 3 0 12 genus 1743 1 Propionibacterium 658 102 1 0 no rank 2608905 0 1 671223 species Propionibacterium sp. oral taxon 193 102 1744 species 1 0 544 Propionibacterium freudenreichii 267 no rank 1643818 0 1 267 1 0 147067 genus species 2006 0 1 267 Thermobispora bispora 61 1 0 52018 no rank Actinobacteria bacterium IMCC26256 61 0 1 1650658 species 1 85007 order 0 252 161 32249 Corynebacteriales 291 85029 family 0 3 0 9 3 genus 37914 1 Dietzia 291 155 0 1 no rank 2617939 species 712270 0 1 155 Dietzia sp. oral taxon 368 499555 species 0 1 127 Dietzia timorensis family 85028 1 4 0 3 482 Tsukamurellaceae 0 3 9 1 genus 2060 Tsukamurella 479 Tsukamurella tyrosinosolvens 294 0 1 57704 species Tsukamurella paurometabola 176 0 1 2061 species 1 family 1762 46 0 56 11167 Mycobacteriaceae 969 670516 genus 5 0 species 83262 0 1 227 Mycobacterium immunogenum 0 1 36809 species Mycobacterium abscessus 301 species 1520670 0 1 149 Mycobacterium stephanolepidis 139 Mycobacterium chelonae 1774 species 0 1 153 Mycobacterium saopaulense species 1578165 1 0 genus 697025 1 0 132 Hoyosella subflava 132 0 1 species 639313 6345 Mycobacterium genus 1763 1 0 506 34 0 1 species 482462 Mycobacterium dioxanotrophicus 248 203 Mycobacterium liflandii species 261524 1 0 206 Mycobacterium ulcerans 1809 species 0 1 Mycobacterium kansasii 206 0 1 species 1768 1769 species 0 1 60 Mycobacterium leprae 2593 13 0 no rank 2642494 164756 species 1 0 136 Mycobacterium sp. MCS 1 0 species 1561223 Mycobacterium sp. QIA-37 99 199 Mycobacterium sp. JS623 species 212767 0 1 species 1168287 0 1 73 Mycobacterium sp. MOTT36Y Mycobacterium sp. EPa45 191 1 0 species 1545728 0 1 1682113 species Mycobacterium sp. YC-RL4 268 164757 species 0 1 166 Mycobacterium sp. JLS 341 Mycobacterium sp. djl-10 species 1879023 1 0 0 1 species 2051552 Mycobacterium sp. PYR15 239 Mycobacterium sp. NRRL B-3805 213 1 0 1570328 species 0 1 189918 species Mycobacterium sp. KMS 139 1273687 species 0 1 226 Mycobacterium sp. VKM Ac-1817D 0 1 species 1920667 Mycobacterium sp. WY10 303 105 Mycobacterium haemophilum 29311 species 0 1 481 0 4 species group 77643 134 Mycobacterium canettii species 78331 0 1 347 Mycobacterium tuberculosis species 1773 1 3 0 130 110 Mycobacterium bovis biotype 1765 1 0 0 1 biotype 33894 Mycobacterium africanum 107 1781 species 1 0 235 Mycobacterium marinum 1313 species group 120793 8 0 Mycobacterium intracellulare 438 109 0 4 1 species 1767 81 Mycobacterium yongonense subspecies 1203599 1 0 Mycobacterium chimaera 177 0 1 subspecies 222805 Mycobacterium indicus pranii 71 0 1 subspecies 35617 species 701042 0 1 148 Mycobacterium marseillense Mycobacterium avium 441 1 0 species 1764 species 1138383 1 0 50 Mycobacterium paraintracellulare Mycobacterium colombiense 236 1 0 species 339268 189 2249310 species group 1 0 189 Mycobacterium shigaense species 722731 0 1 0 2 genus 1073531 440 235 Mycobacterium terrae species 1788 0 1 Mycobacterium sinense 205 0 1 species 875328 0 13 genus 1866885 3235 Mycobacterium vanbaalenii 245 1 0 species 110539 Mycobacterium rhodesiae 165 1 0 36814 species species 1766 0 1 246 Mycobacterium fortuitum Mycobacterium chubuense 220 1 0 1800 species 1 0 species 1791 Mycobacterium aurum 320 0 1 758802 species Mycobacterium litorale 237 0 1 1772 species Mycobacterium smegmatis 274 species 134601 0 1 234 Mycobacterium goodii 0 1 species 1797 Mycobacterium thermoresistibile 254 Mycobacterium gilvum 260 0 1 species 1804 Mycobacterium neoaurum 213 0 1 species 1795 270 Mycobacterium vaccae species 1810 0 1 0 1 1771 species Mycobacterium phlei 297 1 family 85026 0 16 9 1493 Gordoniaceae Gordonia 1477 41 0 8 2053 genus 1 Gordonia polyisoprenivorans 189 0 1 84595 species 188 Gordonia bronchialis 2054 species 0 1 363 2 0 2657482 no rank 158 Gordonia sp. YC-JH1 species 2059875 0 1 337191 species 1 0 205 Gordonia sp. KTR9 Gordonia terrae 285 1 0 2055 species 1136941 species 1 0 176 Gordonia phthalatica Gordonia iterans 235 1 0 1004901 species 182 Segniliparaceae 1 316606 family 1 0 3 Segniliparus 181 1 0 2 1 286801 genus 180 Segniliparus rotundus species 286802 1 0 10428 Corynebacteriaceae 1 family 1653 87 0 52 0 51 317 genus 1716 1 Corynebacterium 10341 505 Corynebacterium vitaeruminis 38305 species 0 1 473 Corynebacterium striatum species 43770 0 1 210 Corynebacterium aquilae species 203263 0 1 species 401472 0 1 179 Corynebacterium ureicelerivorans 0 1 35755 species Corynebacterium kutscheri 90 0 1 1121358 species Corynebacterium doosanense 205 [Brevibacterium] flavum 123 1 0 species 92706 Corynebacterium aurimucosum 202 0 1 species 169292 0 1 1231000 species Corynebacterium lactis 189 166 Corynebacterium casei 160386 species 0 1 species 225326 0 1 311 Corynebacterium halotolerans Corynebacterium crudilactis 115 1 0 1652495 species 2 0 no rank 2624378 299 Corynebacterium sp. ATCC 6931 152 0 1 species 1487956 0 1 species 702967 Corynebacterium sp. NML98-0116 147 Corynebacterium phocae 148 0 1 161895 species 323 Corynebacterium frankenforstense 1230998 species 0 1 Corynebacterium cystitidis 95 1 0 35757 species Corynebacterium simulans 302 0 1 species 146827 Corynebacterium argentoratense 126 0 1 species 42817 206 Corynebacterium uterequi species 1072256 1 0 210 Corynebacterium imitans 156978 species 0 1 1223514 species 1 0 236 Corynebacterium humireducens Corynebacterium camporealensis 180 0 1 161896 species 226 Corynebacterium glyciniphilum 1404244 species 0 1 1717 species 0 1 177 Corynebacterium diphtheriae 393 Corynebacterium jeikeium species 38289 0 1 0 1 species 1408191 Corynebacterium deserti 156 142 Corynebacterium atypicum species 191610 1 0 220 Corynebacterium variabile species 1727 0 1 302 Corynebacterium glutamicum species 1718 0 1 Corynebacterium falsenii 240 0 1 species 108486 0 1 43771 species Corynebacterium urealyticum 231 1 0 species 575200 Corynebacterium maris 227 Corynebacterium flavescens 151 0 1 species 28028 species 152794 0 1 285 Corynebacterium efficiens Corynebacterium resistens 124 0 1 258224 species 167 Corynebacterium testudinoris species 136857 0 1 0 1 1719 species Corynebacterium pseudotuberculosis 126 0 1 571915 species Corynebacterium mustelae 119 species 161879 0 1 104 Corynebacterium kroppenstedtii 1 0 species 349751 Corynebacterium marinum 225 154 Corynebacterium singulare species 161899 0 1 120 Corynebacterium epidermidicanis 1050174 species 1 0 0 1 species 187491 Corynebacterium glaucum 187 species 1721 0 1 168 Corynebacterium callunae 1697 species 0 1 118 Corynebacterium ammoniagenes 0 1 species 65058 Corynebacterium ulcerans 211 191493 species 0 1 323 Corynebacterium sphenisci Corynebacterium terpenotabidum 129 1 0 89154 species Corynebacterium stationis 106 1 0 1705 species 0 2 697024 no rank 114 Lawsonella 114 2 0 6 1 genus 1847725 Lawsonella clevelandensis 108 0 1 1528099 species 7840 Nocardiaceae family 85025 1 31 0 46 23 0 161 1 1827 genus Rhodococcus 4942 no rank 192944 0 12 2216 1 0 species 1653478 Rhodococcus sp. PBTS 1 224 Rhodococcus sp. p52 211 0 1 species 935199 1723645 species 1 0 130 Rhodococcus sp. 008 0 1 species 1570939 Rhodococcus sp. 2G 178 1 0 679318 species Rhodococcus sp. WMMA185 113 266 Rhodococcus sp. WB1 species 1033922 1 0 186 Rhodococcus sp. H-CA8f 1727214 species 0 1 1 0 1045808 species Rhodococcus sp. YL-1 138 211 Rhodococcus sp. MTM3W5.2 1805827 species 1 0 Rhodococcus sp. B7740 244 0 1 1564114 species 0 1 species 1807790 Rhodococcus sp. BH4 128 187 Rhodococcus sp. PBTS 2 species 1653479 0 1 1833 species 0 1 221 Rhodococcus erythropolis Rhodococcus rhodochrous 189 0 1 1829 species Rhodococcus pyridinivorans 199 0 1 103816 species 280 Rhodococcus ruber 1830 species 0 1 0 1 species 1828 Rhodococcus fascians 204 species 334542 1 0 156 Rhodococcus qingshengii species 37919 1 0 543 Rhodococcus opacus 1 0 132919 species Rhodococcus jostii 283 Rhodococcus hoagii 223 0 1 43767 species 191292 species 0 1 267 Rhodococcus aetherivorans Nocardia 2852 7 0 49 genus 1817 1 0 1 37330 species Nocardia nova 341 Nocardia farcinica 447 0 1 species 37329 407 Nocardia terpenica species 455432 0 1 0 1 species 135487 Nocardia cyriacigeorgica 608 0 1 37326 species Nocardia brasiliensis 590 410 Nocardia seriolae species 37332 1 0 5 0 12 2039638 order 1 Candidatus Nanopelagicales 781 2162846 family 11 0 776 560 Candidatus Planktophila 622681 genus 1 5 0 7 0 1 1884905 species Candidatus Planktophila versatilis 111 0 1 1884913 species Candidatus Planktophila lacus 88 Candidatus Planktophila vernalis 75 1 0 1884907 species 61 Candidatus Planktophila limnetica species 573600 1 0 84 Candidatus Planktophila sulfonica species 1884904 0 1 0 1 1884914 species Candidatus Planktophila dulcis 136 216 Candidatus Nanopelagicus 2039639 genus 1 0 4 2 60 Candidatus Nanopelagicus hibericus species 1884915 0 1 0 1 species 1884916 Candidatus Nanopelagicus abundans 110 0 1 1884634 species Candidatus Nanopelagicus limnes 44 Catenulisporales 657 2 0 4 1 414714 order 8 0 3 1 family 414877 Catenulisporaceae 655 0 7 2 genus 414878 1 Catenulispora 647 0 1 species 304895 Catenulispora acidiphila 640 Actinomycetales 5015 19 0 11 1 2037 order 5004 Actinomycetaceae 1 2049 family 1217 0 18 1 0 genus 2529408 209 0 1 52773 species Actinomyces meyeri 209 Actinotignum 180 2 0 2 1 1653174 genus 0 1 species 59505 Actinotignum schaalii 178 Mobiluncus 601 0 2 27 genus 2050 1 2051 species 0 1 574 Mobiluncus curtisii 401 Trueperella 1 1069494 genus 0 7 2 1 0 1661 species Trueperella pyogenes 394 121 28263 genus 1 0 0 1 species 28264 Arcanobacterium haemolyticum 121 Actinomyces 2275 9 0 49 genus 1654 1 Actinomyces pacaensis 258 0 1 1852377 species 0 1 species 1912795 Actinomyces sp. VUL4_3 84 1960083 species 1 0 206 Actinomyces gaoshouyii no rank 2609248 0 3 962 0 1 712122 species Actinomyces sp. oral taxon 414 365 Actinomyces sp. Chiba101 266 0 1 species 1851395 331 Actinomyces sp. oral taxon 897 2081702 species 0 1 394 Actinomyces radicidentis 111015 species 1 0 Actinomyces oris 322 1 0 species 544580 Pseudonocardiales 10864 41 0 23 1 85010 order 10841 Pseudonocardiaceae 1 2070 family 0 40 145 Lentzea 481 1 0 2 165301 genus 1 Lentzea guizhouensis 480 0 1 species 1586287 Prauserella 214 0 2 2 1 142577 genus Prauserella marina 212 0 1 species 530584 1483 Actinoalloteichus 65496 genus 1 0 42 6 321 Actinoalloteichus sp. ADI127-7 1612552 species 1 0 species 1470176 0 1 309 Actinoalloteichus hoggarensis 584 2644606 no rank 0 2 1 0 1612551 species Actinoalloteichus sp. GBA129-24 309 275 Actinoalloteichus sp. AHMU CJ021 2072503 species 0 1 Actinoalloteichus hymeniacidonis 227 0 1 340345 species 560 Saccharothrix 1 genus 2071 5 0 2 103731 species 0 1 555 Saccharothrix espanaensis 0 1 2 1 674734 genus Alloactinosynnema 343 342 1 0 2636053 no rank Alloactinosynnema sp. L-07 342 1 0 1653480 species 38 0 7 1813 genus 1 Amycolatopsis 2635 Amycolatopsis japonica 305 1 0 208439 species 2618356 no rank 2 0 728 0 1 species 1911175 Amycolatopsis sp. BJA-103 320 1 0 species 1896961 Amycolatopsis sp. AA4 408 545 Amycolatopsis mediterranei 33910 species 0 1 1814 species 0 1 375 Amycolatopsis methanolica Amycolatopsis orientalis 644 0 1 species 31958 592 genus 43356 0 1 Kutzneria albida 592 0 1 species 43357 1181 Actinosynnema genus 40566 1 3 0 22 Actinosynnema pretiosum 591 0 1 species 42197 Actinosynnema mirum 568 0 1 species 40567 440 Saccharopolyspora 1835 genus 1 0 2 3 species 1836 1 0 437 Saccharopolyspora erythraea 0 1 2 1 1851 genus Saccharomonospora 199 1852 species 1 0 198 Saccharomonospora viridis Kibdelosporangium 397 2 0 2 1 genus 2029 395 Kibdelosporangium phytohabitans species 860235 1 0 2171 Pseudonocardia 1 1847 genus 0 8 44 0 6 no rank 2619320 1784 319 Pseudonocardia sp. EC080619-01 species 1096856 1 0 0 1 1096868 species Pseudonocardia sp. EC080625-04 281 325 Pseudonocardia sp. EC080610-09 species 1688404 1 0 species 1690815 1 0 276 Pseudonocardia sp. HH130630-07 0 1 445576 species Pseudonocardia sp. AL041005-10 336 247 Pseudonocardia sp. HH130629-09 1641402 species 0 1 species 240495 1 0 343 Pseudonocardia dioxanivorans 247 0 33 1 84998 class Coriobacteriia 36915 1643822 order 1 295 0 18 14265 Eggerthellales 0 17 1716 1 family 1643826 Eggerthellaceae 13970 Phoenicibacter 444 0 2 4 1981050 genus 1 1 0 species 1944646 Phoenicibacter massiliensis 440 0 1 2 genus 447020 1 Adlercreutzia 1631 Adlercreutzia equolifaciens 1630 1 0 446660 species Eggerthella 3688 0 43 3 genus 84111 1 no rank 2648737 1 0 851 851 Eggerthella sp. YY7918 species 502558 0 1 Eggerthella lenta 2794 0 1 84112 species Gordonibacter 3955 0 3 27 genus 644652 1 1335613 species 0 1 2022 Gordonibacter urolithinfaciens 1841863 species 0 1 1906 Gordonibacter massiliensis 2 0 1 79603 genus 1 Denitrobacterium 854 853 Denitrobacterium detoxificans 79604 species 1 0 1482 Slackia genus 84108 1 0 2 5 1477 Slackia heliotrinireducens species 84110 1 0 84162 genus 1 0 2 1 200 Cryptobacterium 0 1 84163 species Cryptobacterium curtum 199 1 order 84999 0 14 140 22403 Coriobacteriales 7 0 79 1 family 1643824 Atopobiaceae 4476 0 55 4 1 133925 genus Olsenella 4027 803 2638792 no rank 1 0 1 0 species 712411 Olsenella sp. oral taxon 807 803 133926 species 1 0 1196 Olsenella uli species 1805478 0 1 1973 Olsenella sp. Marseille-P2300 1 0 2767353 genus 369 0 1 1382 species Atopobium parvulum 369 1 Atopobium 1380 genus 1 0 Coriobacteriaceae 17787 0 6 196 1 family 84107 84113 no rank 0 1 893 893 Coriobacteriaceae bacterium 68-1-3 1531429 species 0 1 16076 Collinsella 1 102106 genus 2 0 18 0 1 species 74426 Collinsella aerofaciens 16058 0 4 2 1 33870 genus Coriobacterium 622 Coriobacterium glomerans 618 1 0 species 33871 84992 class 5 0 267 Acidimicrobiales 267 7 0 5 1 order 84993 0 2 family 2448023 205 Ilumatobacter 205 0 4 2 genus 682522 1 0 1 species 467094 Ilumatobacter coccineus 201 Acidimicrobiaceae 55 2 0 3 1 84994 family 52 genus 53634 0 1 53635 species 0 1 52 Acidimicrobium ferrooxidans Rubrobacteria 467 2 0 6 1 84995 class 1 84996 order 13 0 5 465 Rubrobacterales 452 Rubrobacteraceae 1 family 84997 4 0 5 447 Rubrobacter 1 42255 genus 0 22 3 Rubrobacter xylanophilus 300 0 1 species 49319 125 Rubrobacter radiotolerans species 42256 0 1 2569432 Firmicutes 1 1239 phylum 713 0 92 24930 Negativicutes 909932 class 1 31 0 27 11 0 439 1 1843489 order Veillonellales 10224 9785 Veillonellaceae 31977 family 1 343 0 10 Negativicoccus 759 0 2 11 1 genus 909928 0 1 species 1702287 Negativicoccus massiliensis 748 3227 Megasphaera 1 906 genus 0 2 78 Megasphaera elsdenii 3149 0 1 species 907 0 2 6 1 39948 genus Dialister 2087 Dialister pneumosintes 2081 1 0 species 39950 3 0 11 genus 29465 1 Veillonella 3369 2615 Veillonella parvula 29466 species 0 1 species 248315 0 1 743 Veillonella rodentium Selenomonadales 8187 0 27 14 909929 order 1 1843490 family 1 0 4 9 983 Sporomusaceae 974 Pelosinus 365348 genus 1 0 3 5 454 0 1 2629460 no rank Pelosinus sp. UFO1 454 0 1 484770 species 0 1 365349 species Pelosinus fermentans 515 7177 Selenomonadaceae 1843491 family 1 9 0 50 6296 Selenomonas 970 genus 1 6 0 64 0 1 971 species Selenomonas ruminantium 1777 3099 2637378 no rank 3 0 713030 species 0 1 1143 Selenomonas sp. oral taxon 136 1884263 species 1 0 926 Selenomonas sp. oral taxon 920 1030 Selenomonas sp. oral taxon 478 712538 species 1 0 Selenomonas sputigena 1356 0 1 species 69823 1 genus 158846 2 0 1 831 Megamonas 1 0 158847 species Megamonas hypermegale 830 6492 Acidaminococcales 1843488 order 1 0 9 5 1 family 909930 0 13 4 6483 Acidaminococcaceae genus 904 1 0 18 3 6470 Acidaminococcus Acidaminococcus intestini 4865 0 1 species 187327 Acidaminococcus fermentans 1587 0 1 species 905 84086 no rank 1 0 386 endosymbiont 'TC1' of Trimyema compressum 386 1 0 species 243899 514 Limnochordia class 1676648 1 1 0 5 513 Limnochordales 1 order 1676649 0 4 6 507 Limnochordaceae 1676650 family 1 4 0 3 Limnochorda 503 15 0 2 1 1676651 genus 488 Limnochorda pilosa 1555112 species 0 1 186801 class 1 112 0 217 2338109 Clostridia Natranaerobiales 241 0 4 2 485256 order 1 1 family 485255 1 0 3 239 Natranaerobiaceae 0 4 2 1 genus 375928 Natranaerobius 238 234 Natranaerobius thermophilus 375929 species 0 1 609 0 3 2770089 order 210 family 2770093 0 2 Thermosediminibacter 210 0 2 3 1 291988 genus species 291990 0 1 207 Thermosediminibacter oceani 399 1 0 family 2770092 399 0 1 genus 499228 1 0 species 499229 Tepidanaerobacter acetatoxydans 399 1 order 53433 0 10 1 1789 Halanaerobiales 1038 Halanaerobiaceae 972 family 1 11 0 5 202 genus 32636 0 1 Halothermothrix orenii 202 1 0 31909 species 825 Halanaerobium 1 genus 2330 0 3 4 443 Halanaerobium praevalens 2331 species 0 1 Halanaerobium hydrogeniformans 378 1 0 species 656519 Halobacteroidaceae 750 4 0 2 1 53434 family 1 0 28186 genus 349 0 1 species 28187 Acetohalobium arabaticum 349 0 2 6 1 genus 42417 Halobacteroides 399 393 Halobacteroides halobius species 42422 0 1 0 4100 163 order 186802 1 Clostridiales 2325823 68298 family 1 6 0 3 402 Syntrophomonadaceae 0 1 129001 genus 180 1 0 86170 species Syntrophothermus lipocalidus 180 1 0 genus 862 216 Syntrophomonas wolfei 216 1 0 species 863 45 0 28 family 186807 1 Peptococcaceae 10625 3 0 2 1 278993 genus Thermincola 370 species 863643 0 1 367 Thermincola potens Desulfitobacterium 2219 44 0 5 genus 36853 1 36854 species 0 1 520 Desulfitobacterium dehalogenans 233055 species 1 0 451 Desulfitobacterium dichloroeliminans 0 1 49338 species Desulfitobacterium hafniense 797 407 Desulfitobacterium metallireducens 142877 species 0 1 695 0 1 51196 genus 695 Syntrophobotulus glycolicus species 51197 0 1 Dehalobacter 2065 18 0 4 genus 56112 1 Dehalobacter restrictus 632 1 0 55583 species 1415 no rank 2635733 2 0 0 1 1147129 species Dehalobacter sp. DCA 677 0 1 species 1131462 Dehalobacter sp. CF 738 2282742 genus 0 1 408 408 Desulfotomaculum acetoxidans species 58138 0 1 1 genus 51514 0 1 2 963 Dehalobacterium 962 Dehalobacterium formicoaceticum species 51515 1 0 genus 2282740 0 1 655 Desulfotomaculum gibsoniae 655 0 1 species 102134 371 Candidatus Desulforudis genus 471826 1 0 8 2 Candidatus Desulforudis audaxviator 363 1 0 species 471827 1290 Desulfosporosinus 79206 genus 1 4 0 11 species 79209 0 1 507 Desulfosporosinus meridiei Desulfosporosinus acidiphilus 330 0 1 885581 species species 1563 0 1 442 Desulfosporosinus orientis 31 0 5 1 1562 genus Desulfotomaculum 1544 0 1 species 1564 Desulfotomaculum ruminis 531 species 1833852 1 0 345 Desulfotomaculum ferrireducens 327 Desulfotomaculum reducens 59610 species 0 1 310 Desulfotomaculum nigrificans 1565 species 0 1 538999 no rank 0 10 45515 19409 genus 2717089 0 1 19409 Mordavella sp. Marseille-P3756 2086584 species 1 0 3 0 3 539000 family 1 Clostridiales Family XVII. Incertae Sedis 703 700 Thermaerobacter 73918 genus 1 2 0 18 682 Thermaerobacter marianensis 73919 species 0 1 1796 Clostridiales Family XIII. Incertae Sedis 1 family 543314 11 0 4 1 86331 genus 0 2 8 942 Mogibacterium 0 1 114527 species Mogibacterium diversum 934 species 143393 0 1 843 [Eubacterium] sulci 23607 Intestinimonas 1392389 genus 1 0 143 2 0 1 1297617 species Intestinimonas butyriciproducens 23464 32440 Peptostreptococcaceae 1 family 186804 11 0 102 1 genus 186831 9 0 2 696 Acetoanaerobium Acetoanaerobium sticklandii 687 0 1 1511 species no rank 1411023 1 0 881 2081703 species 0 1 881 Peptostreptococcaceae bacterium oral taxon 929 718 1 0 1481960 genus Peptoclostridium acidaminophilum 718 1 0 1731 species 712 Filifactor 44259 genus 1 0 2 3 Filifactor alocis 709 0 1 143361 species 1492 Paeniclostridium 1849828 genus 1 0 2 3 0 1 1505 species Paeniclostridium sordellii 1489 1870884 genus 1 0 2 63 27839 Clostridioides species 1496 0 1 27776 Clostridioides difficile 31984 family 1 2 0 3 839 Heliobacteriaceae Heliobacterium 837 20 0 2 1 2697 genus 0 1 species 35701 Heliobacterium modesticaldum 817 Symbiobacteriaceae 1241 1 0 3 family 543349 1 genus 2733 1 0 2 9 1240 Symbiobacterium Symbiobacterium thermophilum 1231 0 1 species 2734 55657 Clostridiaceae 1 31979 family 171 0 41 1981033 genus 0 1 105 Mordavella 0 3 8 1 genus 114627 Alkaliphilus 1331 772 Alkaliphilus metalliredigens species 208226 1 0 Alkaliphilus oremlandii 551 1 0 species 461876 1 genus 1485 30 0 392 51684 Clostridium Clostridium novyi 1043 0 1 species 1542 Clostridium scatologenes 1446 0 1 1548 species Clostridium saccharoperbutylacetonicum 2023 0 1 36745 species 1 0 species 1216932 Clostridium bornimense 1305 Clostridium perfringens 1987 0 1 species 1502 species 29341 0 1 1214 Clostridium argentinense 0 1 1493 species Clostridium cellulovorans 1367 0 1 species 1491 Clostridium botulinum 7048 0 1 1520 species Clostridium beijerinckii 2088 0 1 species 1538 Clostridium ljungdahlii 862 Clostridium carboxidivorans 1440 0 1 species 217159 238834 species 0 1 1100 Clostridium estertheticum species 1513 1 0 1596 Clostridium tetani 1727 Clostridium baratii species 1561 1 0 Clostridium saccharobutylicum 1337 0 1 169679 species 1958 Clostridium butyricum 1492 species 0 1 0 1 1501 species Clostridium pasteurianum 1818 2614128 no rank 0 2 9635 Clostridium sp. SY8519 8177 1 0 1042156 species Clostridium sp. BNL1100 1458 0 1 species 755731 Clostridium chauvoei 1203 0 1 species 46867 1130 Clostridium sporogenes species 1509 0 1 Clostridium tyrobutyricum 762 0 1 species 1519 1492 Clostridium kluyveri species 1534 0 1 Clostridium taeniosporum 1336 0 1 394958 species Clostridium autoethanogenum 834 0 1 84023 species 680 Clostridium aceticum 84022 species 0 1 0 1 species 1494 Clostridium cochlearium 1153 692 Clostridium formicaceticum 1497 species 0 1 1016 Clostridium acetobutylicum 1488 species 1 0 Candidatus Arthromitus 1342 0 4 26 genus 49082 1 0 3 no rank 2638829 1316 species 1041504 0 1 530 Candidatus Arthromitus sp. SFB-rat-Yit 0 1 species 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 385 49118 species 0 1 401 Candidatus Arthromitus sp. SFB-mouse 1 390805 genus 0 2 3 1024 Geosporobacter 1021 Geosporobacter ferrireducens species 1424294 0 1 Christensenellaceae 9438 4 0 3 990719 family 1 112 0 2 1 990721 genus Christensenella 9434 9322 Christensenella massiliensis 1805714 species 0 1 Ruminococcaceae 990929 13 0 181 1 541000 family 1625 0 1 no rank 552397 0 1 29343 species [Clostridium] cellulosi 1625 1 Herbivorax 1890281 genus 0 1 0 2 50 1 946234 genus Flavonifractor 13885 292800 species 0 1 13835 Flavonifractor plautii 76 0 3 1 1263 genus Ruminococcus 23228 Ruminococcus albus 5380 0 1 species 1264 Ruminococcus bicirculans 17772 1 0 1160721 species 0 1 2305133 no rank 3446 1572656 species 0 1 3446 Ruminococcaceae bacterium CPB6 944740 Faecalibacterium 1 genus 216851 0 2 268 0 1 853 species Faecalibacterium prausnitzii 944472 0 7 2 1 genus 253238 Ethanoligenens 3823 Ethanoligenens harbinense 3816 1 0 253239 species Oscillospiraceae 6562 0 3 2 1 family 216572 24 0 2 genus 459786 1 Oscillibacter 6560 0 1 species 351091 Oscillibacter valericigenes 6536 5718 Eubacteriaceae family 186806 1 0 5 11 Acetobacterium 603 0 5 2 1 genus 33951 0 1 species 33952 Acetobacterium woodii 598 0 2 343 1 1730 genus Eubacterium 5104 4761 Eubacterium limosum 1736 species 1 0 2304686 family 0 12 15879 2304692 genus 0 3 3084 0 1 1677857 species Herbivorax saccincola 854 [Clostridium] clariflavum 1143 0 1 288965 species Ruminiclostridium thermocellum 1087 1 0 1515 species 1 0 2304693 genus 1166 [Clostridium] thermosuccinogenes 1166 0 1 species 84032 0 1 no rank 2305130 7331 Ruminiclostridium sp. KB18 7331 0 1 1834198 species 1621 Ruminiclostridium 1508657 genus 1 0 2 158 1463 [Clostridium] cellulolyticum species 1521 0 1 genus 236752 1 1 0 2 630 Fastidiosipila Fastidiosipila sanguinis 629 1 0 236753 species 1 0 2304691 genus 1031 0 1 1510 species [Clostridium] stercorarium 1031 1016 Mageeibacillus 1 1637257 genus 1 0 2 species 884684 1 0 1015 Mageeibacillus indolicus 186803 family 1 0 534 27 1146478 Lachnospiraceae 0 2 32 1 698776 genus Cellulosilyticum 1703 species 29360 0 1 1671 Cellulosilyticum lentocellum 0 1 28050 genus 238748 species 39485 0 1 238748 [Eubacterium] eligens 517641 186928 no rank 0 2 509557 [Eubacterium] rectale species 39491 0 1 Lachnospiraceae bacterium oral taxon 500 8084 1 0 712991 species genus 2719231 0 1 9335 [Clostridium] saccharolyticum 9335 0 1 84030 species 4 0 2 genus 1663717 1 Herbinix 2781 Herbinix luporum 2777 0 1 1679721 species 39115 genus 2719313 0 1 39115 [Clostridium] bolteae 208479 species 1 0 1 genus 572511 40 0 3 48730 Blautia 1322 species 0 1 37465 Blautia hansenii no rank 2648079 0 1 11225 0 1 1796616 species Blautia sp. YL58 11225 58196 Anaerostipes 1 207244 genus 0 2 38 649756 species 1 0 58158 Anaerostipes hadrus 34633 Lachnoclostridium genus 1506553 1 0 170 4 0 1 66219 species Lachnoclostridium phytofermentans 3752 1 0 species 1871021 Lachnoclostridium phocaeense 18967 0 1 2608895 no rank 11744 species 1834196 0 1 11744 Lachnoclostridium sp. YL32 Butyrivibrio 10013 0 10 3 1 genus 830 0 1 185008 species Butyrivibrio hungatei 4864 Butyrivibrio proteoclasticus 5139 0 1 species 43305 Roseburia 142268 11 0 2 1 841 genus Roseburia hominis 142257 0 1 species 301301 1 0 2569097 genus 41032 [Eubacterium] hallii 41032 0 1 species 39488 2 0 2 genus 2039240 1 Anaerotignum 1749 0 1 species 28446 Anaerotignum propionicum 1747 0 36 13 1 order 68295 Thermoanaerobacterales 9535 Thermoanaerobacterales Family III. Incertae Sedis 4432 13 0 11 family 543371 1 Caldicellulosiruptor 3029 84 0 9 44000 genus 1 Caldicellulosiruptor kristjanssonii 358 1 0 species 52765 55205 species 0 1 412 Caldicellulosiruptor owensensis Caldicellulosiruptor lactoaceticus 355 1 0 species 52766 0 1 717609 species Caldicellulosiruptor obsidiansis 335 Caldicellulosiruptor bescii 349 0 1 31899 species Caldicellulosiruptor kronotskyensis 425 0 1 species 413889 Caldicellulosiruptor hydrothermalis 338 0 1 species 413888 44001 species 1 0 373 Caldicellulosiruptor saccharolyticus 0 4 3 genus 28895 1 Thermoanaerobacterium 1392 Thermoanaerobacterium xylanolyticum 562 1 0 species 29329 species 1517 0 1 826 Thermoanaerobacterium thermosaccharolyticum 227387 family 1 0 141 141 1 0 227388 genus Thermodesulfobium narugense 141 0 1 species 184064 Thermoanaerobacterales Family IV. Incertae Sedis 417 0 3 3 family 543372 1 12 0 2 1 252965 genus Mahella 414 402 Mahella australiensis species 252966 0 1 Thermoanaerobacteraceae 4532 0 18 22 1 family 186814 genus 1754 1 9 0 154 2912 Thermoanaerobacter Thermoanaerobacter italicus 379 1 0 108150 species 651 2636821 no rank 2 0 339 Thermoanaerobacter sp. X513 species 573062 0 1 312 Thermoanaerobacter sp. X514 species 399726 0 1 Thermoanaerobacter mathranii 319 0 1 583357 species 0 1 2325 species Thermoanaerobacter kivui 370 0 1 species 496866 Thermoanaerobacter pseudethanolicus 344 344 Thermoanaerobacter brockii species 29323 0 1 Thermoanaerobacter wiegelii 351 0 1 species 46354 129957 genus 1 0 2 2 267 Carboxydothermus 129958 species 0 1 265 Carboxydothermus hydrogenoformans 3 0 no rank 42857 749 genus 42837 0 1 290 species 42838 0 1 290 Ammonifex degensii 459 Moorella 1 44260 genus 2 0 2 457 Moorella thermoacetica 1525 species 0 1 1 0 249529 genus 375 species 911092 1 0 375 Caldanaerobacter subterraneus 207 Thermacetogenium 140458 genus 1 3 0 2 204 Thermacetogenium phaeum 85874 species 0 1 1 class 1737404 19 0 2 7342 Tissierellia 1 order 1737405 0 189 16 6982 Tissierellales family 1570339 1 0 893 12 5905 Peptoniphilaceae 0 3 2 1 genus 162289 Peptoniphilus 536 0 1 no rank 2637196 533 Peptoniphilus sp. ING2-D1G 533 0 1 1912856 species 0 3 1 165779 genus 1 Anaerococcus 934 517 Anaerococcus prevotii species 33034 0 1 0 1 1870984 species Anaerococcus mediterraneensis 416 543311 genus 1 0 6 2 816 Parvimonas 0 1 33033 species Parvimonas micra 810 Murdochiella 1879 8 0 2 1161127 genus 1 0 1 species 1852373 Murdochiella vaginalis 1871 Finegoldia 847 2 0 2 genus 150022 1 Finegoldia magna 845 1 0 species 1260 888 Gottschalkiaceae 2042895 family 1 0 1 3 Gottschalkia 887 2 0 2 1505664 genus 1 885 Gottschalkia acidurici species 1556 0 1 1737407 no rank 0 2 358 1 genus 1582879 0 11 2 358 Ezakiella Ezakiella massiliensis 347 1 0 species 1852374 11 0 2 1 class 526524 Erysipelotrichia 8586 8584 Erysipelotrichales 1 526525 order 0 4 10 Erysipelotrichaceae 8580 0 9 17 128827 family 1 0 1 no rank 544447 3148 0 1 1834207 species Erysipelotrichaceae bacterium I46 3148 2189 Turicibacter genus 191303 1 2 0 4 1 0 2638206 no rank 2185 0 1 1712675 species Turicibacter sp. H121 2185 0 2 21 1 genus 1729679 Faecalibaculum 2152 1 0 species 1702221 Faecalibaculum rodentium 2131 1647 genus 1 0 8 3 1074 Erysipelothrix species 1514105 0 1 465 Erysipelothrix larvae Erysipelothrix rhusiopathiae 601 0 1 1648 species Bacilli 188781 84 0 426 class 91061 1 Bacillales 95540 0 262 219 1 order 1385 Planococcaceae 6539 24 0 32 1 186818 family 1 genus 1569 0 15 5 1803 Sporosarcina 2 0 no rank 2647733 668 342 Sporosarcina sp. P33 species 1930764 1 0 1930546 species 0 1 326 Sporosarcina sp. P37 268 Sporosarcina psychrophila species 1476 0 1 852 Sporosarcina ureae species 1571 0 1 1372 genus 1 12 0 27 2836 Planococcus Planococcus kocurii 221 0 1 1374 species 0 1 species 1038856 Planococcus plakortidis 260 Planococcus rifietoensis 252 0 1 200991 species 0 1 161360 species Planococcus antarcticus 184 Planococcus donghaensis 176 1 0 414778 species 203 Planococcus halocryophilus 1215089 species 0 1 599 Planococcus maritimus 192421 species 0 1 Planococcus sp. L10.15 229 0 1 1302659 species 183 Planococcus faecalis 1598147 species 1 0 0 2 2662419 no rank 502 315 Planococcus sp. MB-3u-03 species 2058136 0 1 187 Planococcus sp. PAMC 21323 1526927 species 0 1 439 157226 genus 1 0 0 1 species 1508404 Jeotgalibacillus malaysiensis 439 933 Solibacillus 1 genus 648800 0 4 3 species 76853 1 0 567 Solibacillus silvestris 362 2637870 no rank 0 1 362 Solibacillus sp. R5-41 2048654 species 0 1 1 0 genus 1649 316 316 1 0 2644826 no rank Kurthia sp. 11kri321 316 0 1 species 1750719 180 genus 648802 0 1 180 Rummeliibacillus stabekisii 241244 species 0 1 1634 0 9 no rank 539002 1157 0 7 no rank 539742 Exiguobacterium 1157 60 0 7 1 33986 genus Exiguobacterium sibiricum 224 0 1 332410 species 713 2644629 no rank 4 0 0 1 species 1399115 Exiguobacterium sp. MH3 176 0 1 1849031 species Exiguobacterium sp. U13-1 165 360911 species 1 0 184 Exiguobacterium sp. AT1b Exiguobacterium sp. ZWU0009 188 0 1 species 1224749 Exiguobacterium antarcticum 160 0 1 species 132920 539738 no rank 2 0 477 Gemella 477 0 2 5 genus 1378 1 2624949 no rank 0 1 472 472 Gemella sp. oral taxon 928 1785995 species 0 1 0 2 1 1 186821 family Sporolactobacillaceae 342 1 0 no rank 663587 341 species 85683 1 0 341 [Bacillus] selenitireducens Staphylococcaceae 13237 0 282 42 90964 family 1 Macrococcus 993 0 5 4 1 69965 genus 322 1 0 2619255 no rank Macrococcus sp. IME1552 322 0 1 species 1898474 Macrococcus caseolyticus 406 0 1 species 69966 Macrococcus canis 260 0 1 1855823 species 291 Salinicoccus 1 genus 45669 0 2 14 277 Salinicoccus halodurans species 407035 1 0 11465 Staphylococcus genus 1279 1 261 0 33 250 Staphylococcus felis species 46127 1 0 0 1 species 29382 Staphylococcus cohnii 322 250 Staphylococcus argenteus species 985002 0 1 species 155085 0 1 154 Staphylococcus lutrae 0 1 species 214473 Staphylococcus nepalensis 348 Staphylococcus muscae 216 1 0 1294 species Staphylococcus xylosus 495 0 1 species 1288 no rank 91994 1 0 260 260 Staphylococcus sp. AntiMn-1 species 1715860 0 1 283734 species 0 1 320 Staphylococcus pseudintermedius 278 Staphylococcus succinus species 61015 1 0 Staphylococcus saprophyticus 295 0 1 29385 species 738 Staphylococcus pasteuri species 45972 0 1 0 1 species 1290 Staphylococcus hominis 406 208 Staphylococcus pettenkoferi species 170573 0 1 70255 species 0 1 328 Staphylococcus condimenti Staphylococcus stepanovicii 393 1 0 643214 species 0 1 985762 species Staphylococcus agnetis 208 382 Staphylococcus equorum species 246432 0 1 248 Staphylococcus simulans 1286 species 1 0 0 1 1295 species Staphylococcus schleiferi 297 0 1 1280 species Staphylococcus aureus 1083 387 Staphylococcus lugdunensis 28035 species 0 1 336 Staphylococcus simiae species 308354 0 1 147 Staphylococcus hyicus species 1284 0 1 species 29388 0 1 363 Staphylococcus capitis 1296 species 0 1 311 Staphylococcus sciuri 301 Staphylococcus kloosii species 29384 0 1 289 Staphylococcus carnosus species 1281 0 1 1 0 species 1292 Staphylococcus warneri 352 314 Staphylococcus haemolyticus 1283 species 0 1 0 1 70258 species Staphylococcus piscifermentans 254 671 Staphylococcus epidermidis 1282 species 0 1 206 Auricoccucs genus 2005363 1 0 15 2 Auricoccus indicus 191 1 0 1849491 species 46 0 82 186822 family 1 Paenibacillaceae 26738 genus 76632 1 0 3 2 926 Thermobacillus species 377615 0 1 923 Thermobacillus composti Paenibacillus 23654 36 0 208 genus 44249 1 1126833 species 1 0 637 Paenibacillus beijingensis Paenibacillus bovis 657 0 1 1616788 species species group 2044880 1 0 796 796 Paenibacillus riograndensis 483937 species 0 1 species 159743 1 0 386 Paenibacillus terrae 13 0 no rank 185978 8460 Paenibacillus sp. lzh-N1 490 1 0 2069255 species 578 Paenibacillus sp. Y412MC10 species 481743 1 0 530 Paenibacillus sp. BIHB4019 1870819 species 0 1 0 1 1536774 species Paenibacillus sp. FSL H7-0357 733 Paenibacillus sp. FSL R7-0331 897 0 1 species 1536773 Paenibacillus sp. FSL P4-0081 993 0 1 species 1536769 Paenibacillus sp. IHBB 10380 358 0 1 1566358 species Paenibacillus sp. FSL H7-0737 446 1 0 species 1536775 0 1 324057 species Paenibacillus sp. JDR-2 630 Paenibacillus sp. 32O-W 552 0 1 1695218 species 0 1 species 1536770 Paenibacillus sp. FSL R5-0345 408 1536772 species 0 1 892 Paenibacillus sp. FSL R7-0273 1 0 species 1536771 Paenibacillus sp. FSL R5-0912 953 Paenibacillus swuensis 371 0 1 species 1178515 Paenibacillus mucilaginosus 1114 1 0 61624 species 1 0 species 169760 Paenibacillus stellifer 980 Paenibacillus polymyxa 1363 0 1 1406 species Paenibacillus kribbensis 401 0 1 species 172713 Paenibacillus yonginensis 666 0 1 1462996 species 766 Paenibacillus graminis species 189425 0 1 Paenibacillus odorifer 459 0 1 189426 species species 365617 0 1 660 Paenibacillus sabinae 0 1 species 1763538 Paenibacillus crassostreae 345 Paenibacillus donghaensis 846 0 1 species 414771 162209 species 0 1 443 Paenibacillus naphthalenovorans 44251 species 1 0 1083 Paenibacillus durus 495 Paenibacillus xylanexedens species 528191 1 0 0 1 species 160799 Paenibacillus borealis 966 Paenibacillus larvae 543 1 0 species 1464 59893 species 0 1 355 Paenibacillus peoriae 654 Paenibacillus ihbetae 1870820 species 0 1 85151 no rank 0 3 648 1 55079 genus 0 3 3 648 Aneurinibacillus 0 1 1500254 species Aneurinibacillus soli 401 244 0 1 no rank 2642329 1450761 species 0 1 244 Aneurinibacillus sp. XH2 1428 Brevibacillus 1 genus 55080 4 0 12 0 1 1393 species Brevibacillus brevis 510 357 Brevibacillus formosus 54913 species 1 0 Brevibacillus laterosporus 549 0 1 1465 species 318 Thermoactinomycetaceae 1 186824 family 0 1 4 Laceyella 5 0 1 genus 292635 312 Novibacillus 1 1677050 genus 2 0 8 Novibacillus thermophilus 304 0 1 1471761 species 1 186823 family 9 0 7 2029 Alicyclobacillaceae 10 0 3 1 genus 432330 Tumebacillus 1021 619 Tumebacillus avium 1903704 species 1 0 1 0 species 1214604 Tumebacillus algifaecis 392 386 Kyrpidia genus 1129704 1 3 0 8 177 Kyrpidia sp. EA-1 2055160 species 0 1 species 33943 0 1 201 Kyrpidia tusciae Alicyclobacillus 615 0 14 2 genus 29330 1 Alicyclobacillus acidocaldarius 601 0 1 species 405212 186820 family 1 0 9 8 2594 Listeriaceae 303 Brochothrix 2755 genus 1 0 2 2 1 0 species 2756 Brochothrix thermosphacta 301 Listeria 2283 0 6 33 1 1637 genus Listeria innocua 240 0 1 species 1642 0 1 species 1639 Listeria monocytogenes 942 Listeria welshimeri 331 1 0 1643 species 0 1 1638 species Listeria ivanovii 466 0 1 1640 species Listeria seeligeri 271 1 family 186817 112 0 116 41890 Bacillaceae 0 2 1 genus 175304 1 Lentibacillus 245 species 1472767 0 1 244 Lentibacillus amyloliquefaciens 351195 genus 1 0 266 Salimicrobium jeotgali 266 0 1 1230341 species 1966 Virgibacillus 1 84406 genus 0 7 8 356 Virgibacillus pantothenticus species 1473 0 1 345 Virgibacillus halodenitrificans 1482 species 1 0 1 0 2017483 species Virgibacillus phasianinus 309 616 0 2 no rank 2620237 species 1911587 1 0 363 Virgibacillus sp. 6R 0 1 403957 species Virgibacillus sp. SK37 253 species 163877 1 0 332 Virgibacillus necropolis 0 4 3 genus 1329200 1 Fictibacillus 769 0 1 species 255247 Fictibacillus arsenicus 414 species 1221500 0 1 351 Fictibacillus phosphorivorans 319 Parageobacillus 1 genus 1906945 2 0 1 318 Parageobacillus thermoglucosidasius 1426 species 0 1 26214 Bacillus 1386 genus 1 0 1065 58 0 1 33932 species Bacillus cohnii 450 0 1 species 1408 Bacillus pumilus 1077 0 1 species 1413 Bacillus cellulosilyticus 463 Bacillus flexus 291 0 1 species 86664 358 Bacillus weihaiensis 1547283 species 0 1 412384 species 0 1 398 Bacillus aryabhattai 447 Bacillus infantis species 324767 1 0 79883 species 0 1 287 Bacillus horikoshii 0 1 632773 species Bacillus beveridgei 267 235 Bacillus smithii 1479 species 0 1 33 Bacillus gibsonii 79881 species 0 1 324 species group 1792192 1 0 324 Bacillus altitudinis 293387 species 0 1 Bacillus xiamenensis 238 0 1 1178537 species species 1471 1 0 420 Bacillus methanolicus 618 Bacillus endophyticus species 135735 1 0 Bacillus safensis 497 0 1 561879 species species group 86661 0 10 8441 species 1396 0 1 2641 Bacillus cereus 277 Bacillus toyonensis 155322 species 1 0 Bacillus thuringiensis 2548 0 1 species 1428 1 0 1405 species Bacillus mycoides 1058 0 1 species 1392 Bacillus anthracis 252 0 1 species 658666 Bacillus bombysepticus 226 3 0 no rank 2750818 1004 282 Bacillus sp. ABP14 species 1892404 0 1 1839798 species 1 0 426 Bacillus sp. FDAARGOS_235 2053832 species 0 1 296 Bacillus sp. HBCD-sjtu 580165 species 0 1 435 Bacillus cytotoxicus 472 Bacillus glycinifermentans 1664069 species 0 1 3485 19 0 no rank 185979 Bacillus sp. 275 129 0 1 species 1941347 1 0 1409 species Bacillus sp. (in: Bacteria) 71 species 1565991 0 1 340 Bacillus sp. X1(2014) 125 Bacillus sp. Pc3 species 1446792 1 0 1127744 species 0 1 115 Bacillus sp. JS 1 0 species 563169 Bacillus sp. SJ-10 132 1774743 species 0 1 192 Bacillus sp. SDLI1 Bacillus sp. Lzh-5 61 1 0 2049935 species 0 1 species 756828 Bacillus sp. WP8 206 species 666686 0 1 408 Bacillus sp. 1NLA3E 0 1 species 1856406 Bacillus sp. H15-1 259 species 2009331 1 0 94 Bacillus sp. MD-5 0 1 2026248 species Bacillus sp. 1s-1 257 0 1 1574141 species Bacillus sp. YP1 98 1 0 1628753 species Bacillus sp. LM 4-2 74 Bacillus sp. OxB-1 266 0 1 species 98228 399 Bacillus sp. IHB B 7164 1827146 species 1 0 Bacillus sp. FJAT-14266 181 1 0 1837130 species 0 1 species 1570330 Bacillus sp. BH072 78 898 Bacillus megaterium species 1404 0 1 653685 species group 9 0 4583 species 1402 0 1 444 Bacillus licheniformis 338 Bacillus paralicheniformis 1648923 species 0 1 1938374 species subgroup 0 3 1339 1 0 species 1390 Bacillus amyloliquefaciens 596 1 0 species 492670 Bacillus velezensis 555 species 659243 0 1 188 Bacillus siamensis 403 Bacillus atrophaeus species 1452 0 1 346 Bacillus sonorensis 119858 species 0 1 63 Bacillus vallismortis 72361 species 0 1 0 1 1423 species Bacillus subtilis 1650 species 1398 0 1 867 Bacillus coagulans 841 2675229 genus 2 0 species 264697 0 1 324 Bacillus muralis species 1478 0 1 517 Bacillus simplex 1774 genus 2675234 5 0 424 Bacillus clausii species 79880 0 1 1 0 species 199441 Bacillus krulwichiae 345 300825 species 1 0 307 Bacillus lehensis species 86665 0 1 278 Bacillus halodurans 420 Bacillus pseudofirmus species 79885 0 1 1 genus 400634 5 0 27 2100 Lysinibacillus 28031 species 0 1 350 Lysinibacillus fusiformis species 1421 0 1 997 Lysinibacillus sphaericus 361 no rank 2636778 0 1 361 Lysinibacillus sp. YS11 species 2072025 1 0 species 1145276 1 0 365 Lysinibacillus varians 2675230 genus 0 2 805 0 1 species 859143 Bacillus kochii 405 Bacillus oceanisediminis 400 1 0 665099 species genus 182709 1 0 533 1 0 species 182710 Oceanobacillus iheyensis 533 3 0 1 genus 45667 1 Halobacillus 570 1570 species 0 1 324 Halobacillus halophilus 245 Halobacillus mangrovi 402384 species 0 1 1396 150247 genus 0 5 591 2 0 no rank 2639704 species 1490052 1 0 269 Anoxybacillus sp. B2M1 1490057 species 0 1 322 Anoxybacillus sp. B7M1 206 Anoxybacillus gonensis 198467 species 0 1 364 Anoxybacillus flavithermus 33934 species 0 1 0 1 species 294699 Anoxybacillus amylolyticus 235 399 Terribacillus genus 459532 1 0 1 2 1 0 586416 species Terribacillus aidingensis 398 0 192 15 1 genus 129337 Geobacillus 2797 0 1 species 129338 Geobacillus subterraneus 215 817 1505648 species group 0 4 171 Geobacillus thermocatenulatus species 33938 0 1 species 1462 0 1 91 Geobacillus kaustophilus 0 1 169283 species Geobacillus lituanicus 205 Geobacillus thermoleovorans 350 0 1 species 33941 282 Geobacillus stearothermophilus 1422 species 1 0 890 0 6 no rank 2642459 species 544556 0 1 87 Geobacillus sp. Y412MC61 Geobacillus sp. GHH01 92 0 1 1233873 species Geobacillus sp. Y412MC52 96 0 1 550542 species Geobacillus sp. WCH70 235 1 0 species 471223 species 691437 1 0 130 Geobacillus sp. C56-T3 Geobacillus sp. Y4.1MC1 250 1 0 species 581103 33940 species 1 0 231 Geobacillus thermodenitrificans 170 Geobacillus genomosp. 3 1921421 species 0 1 411 1 0 genus 29331 Amphibacillus xylanus 411 1 0 species 1449 373 genus 1055323 0 1 373 Aeribacillus pallidus species 33936 1 0 0 163 1353 1 order 186826 Lactobacillales 93157 1 family 186827 0 8 2 1598 Aerococcaceae 1 genus 1375 0 34 7 1596 Aerococcus Aerococcus urinae 232 0 1 species 1376 375 Aerococcus christensenii species 87541 0 1 Aerococcus sanguinicola 416 1 0 species 119206 1 0 1377 species Aerococcus viridans 173 1 0 51665 species Aerococcus urinaeequi 209 Aerococcus urinaehominis 157 0 1 species 128944 Leuconostocaceae 2435 17 0 6 1 family 81850 genus 46254 1 0 223 0 1 species 1247 Oenococcus oeni 223 0 17 9 1243 genus 1 Leuconostoc 1408 0 1 species 33964 Leuconostoc citreum 87 174 Leuconostoc kimchii 136609 species 0 1 290 Leuconostoc mesenteroides 1245 species 1 0 157 Leuconostoc carnosum 1252 species 0 1 0 1 species 1244 Leuconostoc gelidum 263 0 1 255248 species Leuconostoc garlicum 86 Leuconostoc lactis 136 0 1 species 1246 0 1 no rank 2685106 198 Leuconostoc sp. C2 198 1 0 species 979982 1 genus 46255 6 0 25 798 Weissella 759620 species 0 1 127 Weissella ceti Weissella koreensis 214 0 1 165096 species 1249 species 0 1 193 Weissella paramesenteroides 0 1 1631871 species Weissella jogaejeotgali 104 0 1 species 137591 Weissella cibaria 135 55208 Streptococcaceae 1 family 1300 0 1181 49 2333 Lactococcus 1357 genus 1 0 5 7 1363 species 0 1 359 Lactococcus garvieae Lactococcus piscium 322 0 1 species 1364 0 1 species 1358 Lactococcus lactis 1368 277 Lactococcus raffinolactis 1366 species 0 1 1301 genus 1 0 43 783 51694 Streptococcus Streptococcus lutetiensis 1462 0 1 species 150055 271 Streptococcus pantholopis species 1811193 1 0 14734 Streptococcus suis species 1307 0 1 12311 species group 671232 0 3 0 1 species 1328 Streptococcus anginosus 7604 Streptococcus constellatus 4265 0 1 76860 species Streptococcus intermedius 442 0 1 species 1338 species 102684 0 1 1548 Streptococcus infantarius species 197614 0 1 789 Streptococcus pasteurianus Streptococcus uberis 223 1 0 species 1349 0 1 species 82348 Streptococcus pluranimalium 158 400065 species 0 1 130 Streptococcus merionis 679 Streptococcus equinus species 1335 0 1 1309 species 0 1 378 Streptococcus mutans Streptococcus parauberis 295 0 1 species 1348 472 Streptococcus iniae 1346 species 1 0 1326 species 0 1 1169 Streptococcus acidominimus 0 1 species 1314 Streptococcus pyogenes 671 Streptococcus thermophilus 802 1 0 species 1308 289 Streptococcus sanguinis 1305 species 0 1 Streptococcus pneumoniae 438 0 1 species 1313 1318 species 0 1 481 Streptococcus parasanguinis 0 1 1814128 species Streptococcus halotolerans 163 Streptococcus pseudopneumoniae 149 0 1 species 257758 species 1825069 0 1 166 Streptococcus marmotae 7 0 no rank 2608887 2143 Streptococcus sp. I-G2 198 0 1 1156431 species 1759399 species 0 1 166 Streptococcus sp. A12 Streptococcus sp. I-P16 219 0 1 species 1156433 1 0 712633 species Streptococcus sp. oral taxon 431 159 1902136 species 0 1 178 Streptococcus sp. NPS 308 1035 Streptococcus sp. FDAARGOS_192 1839799 species 0 1 Streptococcus sp. 'group B' 188 0 1 1319 species 0 1 species 1303 Streptococcus oralis 721 250 Streptococcus cristatus 45634 species 0 1 583 Streptococcus gordonii 1302 species 0 1 199 Streptococcus macedonicus 59310 species 0 1 0 1 species 315405 Streptococcus gallolyticus 477 1311 species 0 1 3292 Streptococcus agalactiae 0 1 species 1888195 Streptococcus himalayensis 137 0 1 28037 species Streptococcus mitis 598 1304 species 1 0 3920 Streptococcus salivarius 813 119603 species group 0 2 0 1 1336 species Streptococcus equi 595 0 1 1334 species Streptococcus dysgalactiae 218 263855 no rank 0 1 279 1 0 species 1993866 Lactobacillales bacterium 279 11697 Enterococcaceae family 81852 1 19 0 34 1350 genus 1 0 561 12 9857 Enterococcus 0 1 53346 species Enterococcus mundtii 401 Enterococcus faecalis 1543 0 1 1351 species 182 Enterococcus casseliflavus 37734 species 1 0 2005703 species 0 1 392 Enterococcus wangshanyuanii 478 Enterococcus durans species 53345 0 1 708 3 0 2608891 no rank Enterococcus sp. CR-Ec1 227 1 0 2057791 species 0 1 species 2060307 Enterococcus sp. FDAARGOS_375 237 0 1 2060306 species Enterococcus sp. FDAARGOS_163 244 1 0 species 1354 Enterococcus hirae 352 4996 Enterococcus faecium species 1352 1 0 0 1 species 417368 Enterococcus thailandicus 244 415 Melissococcus genus 33969 1 0 1 2 Melissococcus plutonius 414 0 1 species 33970 1 0 51668 genus 426 Tetragenococcus halophilus 426 0 1 51669 species 33 0 3 2737 genus 1 Vagococcus 965 0 1 species 633807 Vagococcus penaei 415 species 519472 0 1 517 Vagococcus teuberi 10 0 7 1 186828 family Carnobacteriaceae 2180 4 0 3 1470540 genus 1 Jeotgalibaca 464 708126 species 0 1 202 Jeotgalibaca dankookensis 258 2621505 no rank 1 0 0 1 species 1903686 Jeotgalibaca sp. PTS2502 258 genus 191769 0 1 365 365 no rank 2632303 1 0 species 1911586 0 1 365 Marinilactibacillus sp. 15R 0 17 5 1 genus 2747 Carnobacterium 1344 387 Carnobacterium maltaromaticum species 2751 1 0 Carnobacterium inhibens 330 0 1 species 147709 no rank 257487 0 2 610 327 Carnobacterium sp. 17-4 species 208596 0 1 283 Carnobacterium sp. CP1 species 1564681 0 1 Lactobacillaceae 18407 58 0 89 33958 family 1 678 2767842 genus 3 0 species 1590 0 1 426 Lactobacillus plantarum Lactobacillus pentosus 169 0 1 species 1589 0 1 species 60520 Lactobacillus paraplantarum 83 Lactobacillus 6144 16 0 460 genus 1578 1 176 Lactobacillus amylolyticus 83683 species 1 0 0 4 2620435 no rank 594 0 1 species 1545702 Lactobacillus sp. wkB8 159 1 0 species 2099788 Lactobacillus sp. CBA3605 129 Lactobacillus sp. CBA3606 151 0 1 2099789 species Lactobacillus sp. D1501 155 0 1 species 2108362 1 0 33959 species Lactobacillus johnsonii 518 341 Lactobacillus helveticus 1587 species 0 1 1584 species 0 1 740 Lactobacillus delbrueckii 0 1 species 1579 Lactobacillus acidophilus 214 109790 species 1 0 257 Lactobacillus jensenii species 1596 0 1 466 Lactobacillus gasseri Lactobacillus gallinarum 313 1 0 52242 species 176 Lactobacillus acetotolerans 1600 species 0 1 Lactobacillus amylovorus 1717 0 1 species 1604 172 Lactobacillus kefiranofaciens species 267818 1 0 977 0 3 genus 2742598 299 Lactobacillus mucosae 97478 species 0 1 0 1 species 1613 Lactobacillus fermentum 237 Lactobacillus reuteri 441 0 1 1598 species 1 genus 1253 0 3 6 1104 Pediococcus 142 Pediococcus inopinatus 114090 species 0 1 Pediococcus pentosaceus 310 1 0 species 1255 51663 species 0 1 189 Pediococcus damnosus Pediococcus claussenii 243 0 1 species 187452 1670797 species group 0 1 217 species 1254 0 1 217 Pediococcus acidilactici 525 3 0 2767886 genus 174 Lactobacillus koreensis 637971 species 0 1 Lactobacillus brevis 218 0 1 1580 species 133 Lactobacillus zymae 267363 species 0 1 1 0 2767892 genus 278 Lactobacillus paracollinoides 278 0 1 species 240427 0 4 2767887 genus 3048 species 89059 0 1 190 Lactobacillus acidipiscis 0 1 1601 species Lactobacillus agilis 249 0 1 1623 species Lactobacillus ruminis 1594 species 1624 0 1 1015 Lactobacillus salivarius 148 1 0 2767890 genus 0 1 species 1193095 Lactobacillus hokkaidonensis 148 404 2767889 genus 2 0 Lactobacillus coryniformis 296 0 1 1610 species 108 Lactobacillus backii 375175 species 1 0 6 0 genus 2767879 1704 264 Lactobacillus heilongjiangensis species 1074467 0 1 316 Lactobacillus alimentarius species 1602 0 1 species 1007676 0 1 252 Lactobacillus ginsenosidimutans 1 0 species 392416 Lactobacillus crustorum 251 317 Lactobacillus farciminis 1612 species 1 0 1 0 1847728 species Lactobacillus allii 304 425 0 2 genus 2767885 276 Lactobacillus sakei 1599 species 1 0 Lactobacillus curvatus 149 0 1 28038 species 494 0 3 genus 2767893 1138822 species 0 1 166 Lactobacillus curieae species 1581 0 1 184 Lactobacillus buchneri Lactobacillus parabuchneri 144 0 1 152331 species 1101 0 3 2759736 genus 476 Lactobacillus casei species 1582 0 1 259 Lactobacillus rhamnosus species 47715 1 0 Lactobacillus paracasei 366 0 1 species 1597 534 genus 2767881 0 2 Lactobacillus sanfranciscensis 257 0 1 1625 species 277 Lactobacillus lindneri species 53444 0 1 1 0 genus 2767876 530 1603 species 0 1 530 Lactobacillus amylophilus genus 2767877 1 0 224 1 0 148814 species Lactobacillus kunkeei 224 2 0 33974 no rank 692 Ndongobacter 692 10 0 2 genus 1930845 1 Ndongobacter massiliensis 682 0 1 1871025 species 67819 phylum 0 4 232 class 1663419 0 4 232 Fimbriimonadales 232 0 2 4 1 order 1663425 1 0 3 1663426 family 1 Fimbriimonadaceae 230 2 0 2 1005038 genus 1 Fimbriimonas 229 1 0 1005039 species Fimbriimonas ginsengisoli 227 138 0 1798711 clade 15132 15132 Cyanobacteria 1117 phylum 1 0 138 4 426 Pleurocapsales 52604 order 1 0 5 6 3 0 3 1 1890498 family Dermocarpellaceae 318 102115 genus 2 0 315 species 102116 0 1 168 Stanieria cyanosphaera no rank 2642663 0 1 147 Stanieria sp. NIES-3757 147 0 1 1807358 species 0 1 family 1890500 102 0 1 44474 genus 102 species 54308 0 1 102 Pleurocapsa minor 3606 Nostocales 1 1161 order 0 32 12 0 1 1219117 no rank 145 145 Nostocales cyanobacterium HT-58-2 1940762 species 0 1 2 0 1892263 family 131 Fischerella 131 2 0 2 1 genus 1190 494603 no rank 1 0 129 0 1 species 1752063 Fischerella sp. NIES-3754 129 0 3 2 1 1185 family Rivulariaceae 291 373984 genus 1 3 0 2 289 Rivularia 286 2676603 no rank 1 0 species 373994 0 1 286 Rivularia sp. PCC 7116 1022 2661849 family 8 0 Calothrix 1022 9 0 8 1 1186 genus 870 6 0 2619626 no rank 176 Calothrix sp. NIES-4101 species 2005461 0 1 species 2005469 0 1 272 Calothrix sp. NIES-4071 Calothrix sp. PCC 7507 74 0 1 99598 species 0 1 species 1954171 Calothrix sp. NIES-2098 151 84 Calothrix sp. NIES-3974 2005462 species 0 1 113 Calothrix sp. 336/3 1337936 species 0 1 143 Calothrix parietina 32054 species 0 1 13 0 17 1 1162 family Nostocaceae 2005 0 2 264688 genus 262 129 Trichormus azollae species 1164 0 1 1 0 species 264691 Trichormus variabilis 133 1163 genus 1 0 1 4 516 Anabaena 152 Anabaena cylindrica 1165 species 0 1 363 0 2 no rank 2619674 Anabaena sp. 90 190 0 1 46234 species Anabaena sp. WA102 173 0 1 1647413 species 10 0 11 1 1177 genus Nostoc 1214 161 Nostoc punctiforme 272131 species 0 1 species 1306274 0 1 122 Nostoc flagelliforme 920 7 0 no rank 2593658 142 Nostoc sp. CENA543 species 1869241 0 1 species 1618022 0 1 107 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' Nostoc sp. NIES-3756 158 0 1 1751286 species 113 Nostoc sp. PCC 7120 species 103690 0 1 118 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 species 1 0 28072 species 0 1 146 Nostoc sp. PCC 7524 Nostoc sp. PCC 7107 136 0 1 species 317936 76 0 53 1 order 1890424 Synechococcales 6848 141 family 2303730 0 2 genus 170610 1 0 2 6 141 Halomicronema 135 Halomicronema hongdechloris 1209493 species 0 1 Leptolyngbyaceae 665 0 2 6 1890438 family 1 663 Leptolyngbya genus 47251 1 0 5 3 1184 species 0 1 129 Leptolyngbya boryana 3 0 no rank 2650499 531 0 1 1080068 species Leptolyngbya sp. O-77 305 93 Leptolyngbya sp. PCC 7376 111781 species 0 1 133 Leptolyngbya sp. NIES-3755 species 1752064 0 1 33 0 33 1 1890426 family Synechococcaceae 4374 genus 1129 1 26 0 55 3213 Synechococcus Synechococcus elongatus 123 0 1 species 32046 species 33070 0 1 113 Synechococcus lividus 2922 no rank 2626047 23 0 Synechococcus sp. CC9605 119 0 1 species 110662 0 1 1173263 species Synechococcus sp. PCC 7502 98 0 1 1916956 species Synechococcus sp. SynAce01 195 Synechococcus sp. WH 8103 195 1 0 29410 species 68 Synechococcus sp. PCC 6312 species 195253 1 0 species 64471 0 1 64 Synechococcus sp. CC9311 1 0 321327 species Synechococcus sp. JA-3-3Ab 333 189 Synechococcus sp. WH 8102 species 84588 1 0 Synechococcus sp. PCC 7003 67 0 1 species 374981 Synechococcus sp. CC9902 55 0 1 316279 species 71 Synechococcus sp. PCC 73109 species 374982 1 0 0 1 species 585423 Synechococcus sp. KORDI-49 117 species 585425 0 1 121 Synechococcus sp. KORDI-52 91 Synechococcus sp. NIES-970 species 1827144 0 1 109 Synechococcus sp. UTEX 2973 1350461 species 0 1 321332 species 1 0 149 Synechococcus sp. JA-2-3B'a(2-13) 219 Synechococcus sp. RCC307 316278 species 0 1 Synechococcus sp. WH 8109 117 0 1 species 166314 0 1 1280380 species Synechococcus sp. KORDI-100 178 86 Synechococcus sp. PCC 7002 32049 species 0 1 Synechococcus sp. PCC 7117 59 1 0 species 195498 Synechococcus sp. PCC 8807 91 1 0 195248 species 0 1 species 32051 Synechococcus sp. WH 7803 131 Dactylococcopsis 123 0 3 2 genus 13034 1 120 Dactylococcopsis salina species 292566 0 1 93 1 0 146785 genus Thermosynechococcus elongatus 93 1 0 species 146786 0 9 3 1 genus 167375 Cyanobium 912 2627006 no rank 1 0 505 species 1851505 1 0 505 Cyanobium sp. NIES-981 Cyanobium gracile 398 0 1 59930 species 1890436 family 1 0 100 100 genus 1152 1 0 no rank 2593292 1 0 100 100 Pseudanabaena sp. PCC 7367 species 82654 0 1 1213 family 0 3 1077 genus 1218 3 0 1077 0 1 species 1219 Prochlorococcus marinus 840 237 2 0 2627481 no rank 1501268 species 1 0 163 Prochlorococcus sp. MIT 0604 74 Prochlorococcus sp. MIT 0801 species 1501269 1 0 1 family 1890428 0 3 5 296 Merismopediaceae 293 Synechocystis 1 genus 1142 4 0 4 289 0 3 2640012 no rank Synechocystis sp. PCC 6803 84 0 1 species 1148 Synechocystis sp. IPPAS B-1465 84 0 1 2116702 species Synechocystis sp. PCC 6714 121 0 1 1147 species 119 1890429 family 0 2 1 155977 genus 1 0 2 119 Acaryochloris Acaryochloris marina 118 0 1 155978 species 106 1 0 order 1890505 family 1890528 1 0 106 0 1 54298 genus 106 Chroococcidiopsis thermalis 106 0 1 species 54299 103 1 0 1983111 no rank species 718217 0 1 103 cyanobacterium endosymbiont of Epithemia turgida subclass 1301283 39 0 3403 2052 Chroococcales 1 order 1118 0 21 6 1 1890449 family 0 6 4 340 Microcystaceae Microcystis 334 0 8 3 1125 genus 1 Microcystis aeruginosa 219 0 1 1126 species 1 0 2643300 no rank 107 Microcystis sp. MC19 107 0 1 1967666 species 1 family 1890452 3 0 2 177 Cyanobacteriaceae 175 Cyanobacterium 102234 genus 1 0 2 1 Cyanobacterium aponinum 174 0 1 species 379064 1890464 family 4 0 667 426 0 2 genus 669357 426 0 2 no rank 2625037 species 1617448 0 1 171 Geminocystis sp. NIES-3709 1 0 species 1615909 Geminocystis sp. NIES-3708 255 84 genus 102231 0 1 0 1 no rank 2623012 84 Gloeocapsa sp. PCC 7428 84 1 0 species 1173026 157 1 0 genus 268175 no rank 2648896 1 0 157 1 0 2005460 species Chondrocystis sp. NIES-4102 157 862 0 9 1890450 family 92682 no rank 0 2 87 0 1 2 1 genus 76023 Halothece 87 0 1 no rank 2632878 86 65093 species 1 0 86 Halothece sp. PCC 7418 188 263510 genus 1 0 0 1 2546360 species 188 188 Cyanothece sp. ATCC 51142 strain 43989 0 1 0 2 genus 2546365 189 189 species 2546366 0 2 1 0 41431 strain Cyanothece sp. PCC 8801 93 0 1 strain 395962 Cyanothece sp. PCC 8802 96 105 Candidatus Atelocyanobacterium 1 1453359 genus 0 1 2 Candidatus Atelocyanobacterium thalassa 104 1 0 species 713887 28070 genus 2 0 293 2546356 species 1 0 145 Cyanothece sp. PCC 7424 145 0 1 strain 65393 2546359 species 0 1 148 148 Cyanothece sp. PCC 7822 strain 497965 0 1 1351 Oscillatoriales 1 order 1150 10 0 18 Cyanothecaceae 158 7 0 3 family 1892249 1 10 0 2 genus 43988 1 Cyanothece 151 no rank 2649277 0 1 141 141 Cyanothece sp. PCC 7425 species 395961 0 1 family 1892255 1 2 0 4 151 Gomontiellaceae 1 0 genus 241421 147 species 241425 0 1 147 Crinalium epipsammum 507 Oscillatoriaceae 1 1892254 family 0 6 4 1155738 genus 1 0 2 1 138 Moorea 137 Moorea producens 1155739 species 1 0 365 Oscillatoria 1158 genus 1 0 4 3 species 118323 0 1 152 Oscillatoria acuminata species 482564 0 1 209 Oscillatoria nigro-viridis family 1892252 1 0 1 4 270 Microcoleaceae Microcoleus 100 1 0 2 44471 genus 1 2642155 no rank 0 1 99 species 1173027 0 1 99 Microcoleus sp. PCC 7113 169 1 0 1205 genus Trichodesmium erythraeum 169 0 1 species 1206 Coleofasciculaceae 255 0 1 2 1 1892251 family 254 0 1 genus 63132 no rank 2648775 0 1 254 0 1 1173025 species Geitlerinema sp. PCC 7407 254 Gloeobacteria 636 6 0 5 1 class 307596 631 Gloeobacterales 1 307595 order 11 0 5 1890422 family 1 0 4 6 620 Gloeobacteraceae 614 Gloeobacter 33071 genus 1 3 0 2 0 1 1416614 species Gloeobacter kilaueensis 224 0 1 33072 species Gloeobacter violaceus 388 35 0 phylum 1297 8546 Deinococci 8546 35 0 60 1 188787 class Deinococcales 5349 77 0 15 1 118964 order 20 0 14 183710 family 1 Deinococcaceae 5272 1298 genus 1 13 0 86 5252 Deinococcus Deinococcus peraridilitoris 265 0 1 species 432329 339 no rank 2623546 0 1 339 Deinococcus sp. NW-56 species 2080419 0 1 1182568 species 0 1 346 Deinococcus puniceus 1309411 species 1 0 463 Deinococcus soli Cha et al. 2016 Deinococcus gobiensis 580 1 0 502394 species species 309887 0 1 423 Deinococcus maricopensis 310783 species 0 1 270 Deinococcus deserti Deinococcus actinosclerus 492 1 0 1768108 species 55148 species 0 1 521 Deinococcus proteolyticus 0 1 species 1182571 Deinococcus swuensis 577 Deinococcus radiodurans 487 1 0 species 1299 Deinococcus geothermalis 403 0 1 species 68909 2834 Thermales order 68933 1 38 0 16 Thermaceae 2796 0 18 15 1 family 188786 0 1 186191 genus 163 1 0 species 186192 Marinithermus hydrothermalis 163 25 0 8 270 genus 1 Thermus 1533 56957 species 0 1 223 Thermus oshimai 0 1 species 37636 Thermus scotoductus 176 species 274 0 1 414 Thermus thermophilus 56956 species 0 1 126 Thermus brockianus Thermus parvatiensis 153 0 1 species 456163 0 1 2619321 no rank 180 180 Thermus sp. CCB_US3_UF1 species 1111069 0 1 236 Thermus aquaticus 271 species 1 0 433 Oceanithermus 1 208447 genus 14 0 2 species 187137 1 0 419 Oceanithermus profundus 65551 genus 1 8 0 3 649 Meiothermus 0 1 species 277 Meiothermus ruber 367 0 1 species 52022 Meiothermus silvanus 274 3 0 order 2762275 303 1 family 332247 3 0 3 303 Trueperaceae 300 Truepera genus 332248 1 0 2 11 0 1 species 332249 Truepera radiovictrix 289 386 phylum 200938 0 4 386 4 0 class 118001 order 189769 1 11 0 4 386 Chrysiogenales 0 1 3 1 189770 family Chrysiogenaceae 375 0 1 2 genus 393029 1 Desulfurispirillum 374 373 Desulfurispirillum indicum 936456 species 0 1 4306 phylum 200918 0 38 Thermotogae 4306 38 0 8 188708 class 1 4 0 7 1643947 order 1 Petrotogales 1228 0 6 family 1643949 1224 188 Petrotoga 1 28236 genus 2 0 2 0 1 69499 species Petrotoga mobilis 186 genus 1511648 0 1 172 172 Defluviitoga tunisiensis 1006576 species 0 1 Marinitoga 864 3 0 3 1 genus 160798 446 Marinitoga piezophila 149715 species 0 1 415 1 0 2640159 no rank species 1545835 1 0 415 Marinitoga sp. 1137 Thermotogales 2783 0 1 26 1 2419 order Fervidobacteriaceae 1210 0 8 2 1 1643950 family 367 3 0 genus 2422 138 Fervidobacterium pennivorans species 93466 0 1 Fervidobacterium nodosum 134 1 0 species 2424 95 Fervidobacterium islandicum species 2423 1 0 841 4 0 2420 genus 377 0 2 no rank 2676525 0 1 species 1437364 Thermosipho sp. 1070 193 Thermosipho sp. 1063 184 0 1 species 1462747 0 1 46541 species Thermosipho melanesiensis 187 2421 species 0 1 277 Thermosipho africanus 0 17 1 1 family 188709 Thermotogaceae 1572 genus 1643951 1 5 0 6 515 Pseudothermotoga 91 Pseudothermotoga thermarum 119394 species 1 0 114 Pseudothermotoga hypogea 57487 species 0 1 177758 species 0 1 144 Pseudothermotoga lettingae 160 Pseudothermotoga elfii 38322 species 0 1 Thermotoga 1056 13 0 11 1 genus 2335 88 Thermotoga caldifontis species 1508419 1 0 93930 species 0 1 92 Thermotoga naphthophila 0 1 species 2337 Thermotoga neapolitana 133 127 Thermotoga profunda species 1508420 0 1 0 1 93929 species Thermotoga petrophila 86 418 4 0 no rank 2631113 0 1 126740 species Thermotoga sp. RQ2 90 Thermotoga sp. RQ7 124 0 1 species 126738 0 1 1157948 species Thermotoga sp. 2812B 103 101 Thermotoga sp. Cell2 1157947 species 0 1 species 2336 0 1 99 Thermotoga maritima order 1643946 0 4 287 287 4 0 family 1643948 177 0 2 genus 651456 89 Kosmotoga pacifica 1330330 species 0 1 651457 species 1 0 88 Kosmotoga olearia 110 Mesotoga 1 genus 1184396 0 2 1 109 Mesotoga prima species 1184387 0 1 0 2 no rank 2323 202 202 0 2 1783234 clade 0 1 95901 clade 153 153 class 2497643 1 0 1 0 2497644 order 153 2497645 family 0 1 153 153 0 1 1551504 genus Candidatus Babela massiliensis 153 1 0 673862 species 49 95818 phylum 1 0 1 0 1895827 no rank 49 49 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 species 0 1 22 0 32066 phylum 11907 11907 Fusobacteriia class 203490 1 0 22 9 11898 Fusobacteriales 1 203491 order 19 0 21 1 family 203492 11 0 10 8525 Fusobacteriaceae 1 0 167639 genus 333 Ilyobacter polytropus 333 0 1 167642 species 32 0 9 1 genus 848 Fusobacterium 8182 Fusobacterium gonidiaformans 408 0 1 species 849 species 850 0 1 656 Fusobacterium mortiferum Fusobacterium varium 1174 0 1 species 856 579 Fusobacterium ulcerans species 861 0 1 1459 Fusobacterium periodonticum 860 species 0 1 2768 Fusobacterium nucleatum species 851 0 1 1583098 species 0 1 821 Fusobacterium hwasookii Fusobacterium necrophorum 285 0 1 859 species 1 family 1129771 9 0 13 3354 Leptotrichiaceae 34104 genus 1 0 503 Streptobacillus moniliformis 503 1 0 species 34105 1 0 168808 genus 474 187101 species 1 0 474 Sneathia amnii 32067 genus 1 0 5 5 1777 Leptotrichia Leptotrichia buccalis 452 0 1 species 40542 1320 2633022 no rank 0 3 0 1 1785996 species Leptotrichia sp. oral taxon 847 426 species 712357 1 0 438 Leptotrichia sp. oral taxon 212 0 1 712368 species Leptotrichia sp. oral taxon 498 456 587 genus 32068 1 0 587 Sebaldella termitidis 826 species 0 1 7 0 200940 phylum 541 class 67799 1 0 7 3 541 Thermodesulfobacteria order 188710 6 0 538 0 1 6 1 188711 family Thermodesulfobacteriaceae 538 241192 genus 1 0 112 171695 species 0 1 112 Thermodesulfatator indicus 303 Thermodesulfobacterium genus 1740 1 3 0 2 species 1295609 1 0 203 Thermodesulfobacterium geofontis Thermodesulfobacterium commune 98 0 1 1741 species 444090 genus 1 0 122 1653476 species 1 0 122 Caldimicrobium thiodismutans phylum 2138240 0 2 54 54 2138243 class 0 2 2138246 order 0 2 54 54 Coprothermobacteraceae 1 2138247 family 1 0 2 53 68335 genus 0 1 Coprothermobacter proteolyticus 53 0 1 35786 species 0 19 57723 phylum 2463 18 0 17 1 204432 class Acidobacteriia 2169 32 0 12 order 204433 1 Acidobacteriales 1753 Acidobacteriaceae 1721 0 11 35 family 204434 1 371 Acidobacterium 1 33973 genus 0 2 2 0 1 33075 species Acidobacterium capsulatum 369 494 Terriglobus genus 392733 1 0 1 3 0 1 species 870903 Terriglobus saanensis 254 392734 species 1 0 239 Terriglobus roseus Granulicella 538 0 3 4 940557 genus 1 268 Granulicella tundricola species 940615 1 0 0 1 940614 species Granulicella mallensis 266 Candidatus Koribacter 283 0 2 2 1 genus 658061 Candidatus Koribacter versatilis 281 1 0 658062 species 1 332160 order 0 4 12 398 Solibacterales 386 Solibacteraceae 332161 family 1 13 0 3 373 Candidatus Solibacter 1 genus 332162 0 2 3 1 0 species 332163 Candidatus Solibacter usitatus 370 2 0 2 class 1562566 1 Blastocatellia 294 458032 genus 1 0 292 292 Chloracidobacterium thermophilum 458033 species 0 1 291 4 0 1930617 phylum 0 4 1 1 class 1962850 Calditrichae 291 order 1962852 1 0 3 2 290 Calditrichales 288 Calditrichaceae family 1962854 1 0 1 2 187144 genus 1 0 287 287 Caldithrix abyssi species 187145 1 0 10874 87 0 clade 1783257 0 4 134625 phylum 198 4 0 2 class 1921781 1 Kiritimatiellae 198 3 0 order 1921782 196 196 Kiritimatiellaceae 1921783 family 1 1 0 3 1 1921784 genus 2 0 10 195 Kiritimatiella 0 1 species 1307763 Kiritimatiella glycovorans 185 74201 phylum 1 0 26 5 3349 Verrucomicrobia 116 0 3 1955630 class 116 order 717963 0 3 3 0 family 717964 116 1 0 3 genus 511745 1 Methylacidiphilum 116 0 1 species 511746 Methylacidiphilum infernorum 67 Methylacidiphilum fumariolicum 48 0 1 species 591154 Verrucomicrobiae 1239 0 6 5 1 class 203494 0 4 5 1 48461 order Verrucomicrobiales 1234 1230 Akkermansiaceae 1647988 family 1 0 4 9 Akkermansia 1221 3 0 3 239934 genus 1 Akkermansia glycaniphila 418 1 0 species 1679444 1 0 239935 species Akkermansia muciniphila 800 19 2 0 134549 class Candidatus Xiphinematobacter 19 2 0 5 134550 genus 1 14 no rank 2648876 1 0 Candidatus Xiphinematobacter sp. Idaho Grape 14 0 1 1704307 species 1 414999 class 12 0 12 1395 Opitutae Opitutales 1274 0 30 7 1 415000 order 1 134623 family 0 6 11 1244 Opitutaceae 0 1 278955 no rank 481 0 1 species 794903 Opitutaceae bacterium TAV5 481 1961799 genus 1 2 0 4 401 Lacunisphaera 397 Lacunisphaera limnophila species 1838286 0 1 7 0 2 1 genus 178440 Opitutus 351 Opitutus terrae 344 0 1 species 107709 Puniceicoccales 109 0 1 4 415001 order 1 1 0 3 415002 family 1 Puniceicoccaceae 108 0 2 1 1 genus 442430 Coraliomargarita 107 106 Coraliomargarita akajimensis 395922 species 1 0 575 no rank 417295 0 2 0 1 species 2026799 Verrucomicrobia bacterium 249 0 1 1637999 species Verrucomicrobia bacterium IMCC26134 326 3112 phylum 256845 0 3 1 class 1313211 18 0 3 3112 Lentisphaeria 0 432 2 1 278082 order Victivallales 3094 2662 1 0 no rank 1674876 2662 Victivallales bacterium CCUG 44730 species 2094242 0 1 204428 phylum 21 0 815 1 204429 class 3 0 21 815 Chlamydiia 247 1963360 order 6 0 92713 family 2 0 155 genus 282132 1 0 77 Candidatus Protochlamydia naegleriophila 77 0 1 389348 species 0 1 genus 83551 78 Parachlamydia acanthamoebae 78 0 1 species 83552 31 family 92712 2 0 Simkania 31 2 0 4 1 genus 34093 species 83561 0 1 27 Simkania negevensis 1 92714 family 2 0 3 61 Waddliaceae 71666 genus 1 0 58 species 71667 0 1 58 Waddlia chondrophila Chlamydiales 565 14 0 1 51291 order 1 564 Chlamydiaceae family 809 1 13 0 1 563 12 0 1113537 no rank 1 genus 810 0 12 48 563 Chlamydia Chlamydia suis 51 0 1 83559 species 40 Chlamydia felis 83556 species 1 0 species 1457153 0 1 89 Chlamydia gallinacea species 83554 1 0 29 Chlamydia psittaci 1 0 species 83560 Chlamydia muridarum 54 species 83555 0 1 28 Chlamydia abortus 40 Chlamydia avium 1457141 species 0 1 species 85991 0 1 37 Chlamydia pecorum 813 species 0 1 62 Chlamydia trachomatis 83558 species 0 1 57 Chlamydia pneumoniae 0 1 83557 species Chlamydia caviae 28 3400 Planctomycetes 1 phylum 203682 0 33 2 2597 Planctomycetia 1 class 203683 14 0 24 6 0 2691356 order 704 704 Isosphaeraceae 1763524 family 1 8 0 6 Singulisphaera 158 2 0 1 466152 genus 1 0 1 species 466153 Singulisphaera acidiphila 157 175 127 genus 0 1 Isosphaera pallida 175 0 1 128 species Paludisphaera 363 4 0 2 genus 1763521 1 species 1387353 0 1 359 Paludisphaera borealis 369 2691354 order 0 5 2691357 family 0 3 270 127 genus 265488 1 0 1 0 265606 species Rhodopirellula baltica 127 3 0 2 1 123 genus Pirellula 143 species 125 1 0 140 Pirellula staleyi family 2691358 2 0 99 1 1676125 genus 2 0 2 99 Thermogutta 0 1 1331910 species Thermogutta terrifontis 97 10 0 40 1 112 order Planctomycetales 1276 family 126 1 0 5 9 1236 Planctomycetaceae 1 1649480 genus 2 0 2 141 Planctopirus Planctopirus limnophila 139 0 1 120 species Planctomyces 764 3 0 12 1 genus 118 2 0 no rank 2648843 752 Planctomyces sp. SH-PL62 444 1 0 species 1636152 308 Planctomyces sp. SH-PL14 1632864 species 1 0 0 1 1649490 genus 181 species 119 0 1 181 Rubinisphaera brasiliensis 1 0 2 1 genus 1936111 Fuerstia 145 0 1 species 1891926 Fuerstia marisgermanicae 144 234 2691355 order 2 0 234 Gemmataceae 1 family 1914233 2 0 2 113 genus 0 1 232 232 no rank 2622970 0 1 Gemmata sp. SH-PL17 232 1 0 1630693 species 2517206 class 2 0 147 3 0 2 1 1127829 order Candidatus Brocadiales 147 144 0 1 1127830 family 0 1 380738 genus 144 species 174633 0 1 144 Candidatus Kuenenia stuttgartiensis Phycisphaerae 654 0 6 6 1 class 666505 Phycisphaerales 322 0 7 3 order 666506 1 family 666507 0 2 315 666508 genus 1 0 2 2 315 Phycisphaera 313 Phycisphaera mikurensis species 547188 0 1 0 2 order 2483366 326 326 0 2 2483367 family 326 2483368 genus 2 0 Phycisphaerae bacterium ST-PulAB-D4 147 0 1 1941349 species Phycisphaerae bacterium L21-RPul-D3 179 0 1 1940790 species phylum 68297 0 4 421 1 0 4 class 203486 1 Dictyoglomia 421 420 Dictyoglomales 203487 order 1 3 0 1 419 0 2 203488 family 419 0 2 13 genus species 14 1 0 209 Dictyoglomus thermophilum Dictyoglomus turgidum 210 0 1 513050 species 121 0 3 2498710 clade 121 phylum 67814 3 0 121 693071 class 0 3 121 3 0 order 693072 121 Caldisericaceae 693073 family 1 3 0 2 693074 genus 1 2 0 1 119 Caldisericum Caldisericum exile 118 0 1 species 693075 2168 phylum 508458 0 10 2168 Synergistia class 649775 1 0 10 7 0 9 9 order 649776 1 Synergistales 2161 0 15 8 1 649777 family Synergistaceae 2152 81466 genus 1 0 119 species 81468 0 1 119 Aminobacterium colombiense 1610 Cloacibacillus genus 508459 1 0 2 5 Cloacibacillus porcorum 1605 0 1 1197717 species 336260 genus 1 0 134 Thermovirga lienii 134 0 1 species 336261 80 49894 genus 1 0 species 97477 0 1 80 Acetomicrobium mobile 194 Thermanaerovibrio 1 81461 genus 2 0 5 189 Thermanaerovibrio acidaminovorans 81462 species 0 1 0 13 40117 phylum 1284 Nitrospira 1284 3 0 13 class 203693 1 1281 Nitrospirales 1 189778 order 0 12 15 11 0 1 189779 family 1 Nitrospiraceae 1266 763 Nitrospira 1234 genus 1 10 0 5 Nitrospira japonica 133 0 1 species 1325564 197 Candidatus Nitrospira inopinata 1715989 species 0 1 0 1 species 42253 Nitrospira moscoviensis 216 Nitrospira defluvii 207 1 0 330214 species 2 0 4 genus 179 1 Leptospirillum 317 118 261386 species group 1 0 species 178606 0 1 118 Leptospirillum ferriphilum species group 655606 1 0 64 64 Leptospirillum ferrooxidans 180 species 1 0 133 261385 species group 0 1 Leptospirillum sp. Group II 'CF-1' 133 0 1 species 1660083 185 genus 28261 0 1 0 1 species 28262 Thermodesulfovibrio yellowstonii 185 563 6 0 phylum 74152 129 1 0 641853 class 1 0 order 641854 129 0 1 family 641876 129 1 0 genus 423604 129 129 Elusimicrobium minutum species 423605 0 1 447830 class 4 0 336 4 0 1 order 1783344 1 Endomicrobiales 336 335 1783343 family 0 3 Endomicrobium 335 0 1 3 1 genus 1408194 1408281 species 0 1 232 Endomicrobium proavitum 1408204 species 0 1 102 Candidatus Endomicrobium trichonymphae 0 1 no rank 99260 98 98 uncultured Termite group 1 bacterium 167965 species 1 0 1522 0 21 200783 phylum 0 21 4 1 class 187857 Aquificae 1522 275 0 4 order 1485951 0 1 4 family 558314 1 Desulfurobacteriaceae 275 181 64159 genus 1 0 Desulfurobacterium thermolithotrophum 181 0 1 64160 species 93 Thermovibrio 171868 genus 1 0 1 2 0 1 228745 species Thermovibrio ammonificans 92 1243 order 32069 0 16 1 64898 family 0 11 7 717 Aquificaceae 487 Hydrogenobaculum 168657 genus 1 6 0 7 480 2622382 no rank 0 5 species 547144 0 1 99 Hydrogenobaculum sp. HO Hydrogenobaculum sp. Y04AAS1 84 0 1 380749 species 1 0 547143 species Hydrogenobaculum sp. 3684 99 species 547145 0 1 99 Hydrogenobaculum sp. SHO 0 1 species 547146 Hydrogenobaculum sp. SN 99 75 genus 75905 0 2 Thermocrinis ruber 45 0 1 species 75906 136094 species 1 0 30 Thermocrinis albus 0 1 genus 939 42 940 species 0 1 42 Hydrogenobacter thermophilus 106 2713 genus 0 1 106 Aquifex aeolicus 63363 species 1 0 66 0 1 90150 no rank 66 412592 genus 1 0 412593 species 0 1 66 Thermosulfidibacter takaii 1 224027 family 0 4 3 460 Hydrogenothermaceae 2 0 212790 genus 350 no rank 2619248 1 0 201 201 Sulfurihydrogenibium sp. YO3AOP1 species 436114 0 1 309806 species 0 1 149 Sulfurihydrogenibium azorense 107 182899 genus 1 0 107 Persephonella marina 309805 species 0 1 56 0 phylum 203691 14881 Spirochaetia 14881 56 0 42 class 203692 1 0 8 1643688 order 954 0 2 8 1 family 170 Leptospiraceae 954 188 genus 338321 0 1 species 29510 1 0 188 Turneriella parva 5 0 6 1 171 genus Leptospira 764 species 172 0 1 119 Leptospira biflexa 173 species 0 1 253 Leptospira interrogans 0 1 species 28183 Leptospira santarosai 111 species 28452 0 1 128 Leptospira alstonii 0 1 174 species Leptospira borgpetersenii 148 Brachyspirales 2510 1 0 7 1 order 1643686 Brachyspiraceae 2509 6 0 13 143786 family 1 2496 Brachyspira 1 29521 genus 0 5 30 84377 species 0 1 452 Brachyspira intermedia 502 Brachyspira hyodysenteriae species 159 0 1 425 Brachyspira murdochii 84378 species 1 0 Brachyspira pilosicoli 1087 0 1 species 52584 0 266 40 order 136 1 Spirochaetales 11375 Spirochaetaceae 9461 116 0 23 1 137 family genus 146 1 3 0 2 799 Spirochaeta 301 Spirochaeta africana 46355 species 1 0 0 1 154 species Spirochaeta thermophila 496 334 1911556 genus 1 0 0 1 species 55206 Sediminispirochaeta smaragdinae 334 0 2 4 1 genus 399320 Sphaerochaeta 922 0 1 species 1131703 Sphaerochaeta globosa 393 species 1131707 1 0 292 Sphaerochaeta pleomorpha species 273376 0 1 235 Sphaerochaeta coccoides 231 Salinispira 1 genus 1616789 0 2 1 1307761 species 0 1 230 Salinispira pacifica 157 genus 1 80 0 12 7059 Treponema Treponema primitia 418 0 1 88058 species 1 0 160 species Treponema pallidum 42 167 species 0 1 2587 Treponema succinifaciens 0 1 158 species Treponema denticola 594 247 Treponema caldarium 215591 species 0 1 0 1 species 221027 Treponema putidum 1018 349 Treponema azotonutricium 150829 species 1 0 1 0 2638727 no rank 1004 Treponema sp. OMZ 838 1004 1 0 1539298 species 524 Treponema brennaborense 81028 species 0 1 Treponema pedis 156 0 1 species 409322 Treponema paraluiscuniculi 40 0 1 species 53435 16 0 family 1643685 1648 Borreliella 846 0 27 8 genus 64895 1 0 1 species 1674146 Borrelia mayonii 123 1 0 species 64897 Borreliella bissettii 67 Borreliella burgdorferi 96 1 0 species 139 Borreliella garinii 164 0 1 species 29519 62088 species 1 0 114 Borreliella valaisiana 0 1 species 664662 Borreliella bavariensis 133 species 29518 0 1 122 Borreliella afzelii Borrelia 802 8 0 23 1 genus 138 47466 species 1 0 187 Borrelia miyamotoi 141 species 0 1 108 Borrelia parkeri 143 species 0 1 74 Borrelia anserina Borrelia duttonii 116 1 0 species 40834 118 Borrelia hermsii 140 species 0 1 Borrelia recurrentis 87 0 1 44449 species Borrelia turicatae 89 0 1 species 142 name 0 1 0 2157 superkingdom 0 254 19931 1783275 clade 0 48 1515 phylum 51967 0 1 6 6 498845 genus 0 1 6 Candidatus Korarchaeum cryptofilum 498846 species 1 0 0 38 phylum 28889 967 967 38 0 class 183924 3 0 871006 order 122 0 1 255472 family 95 0 1 200414 genus 95 Caldisphaera lagunensis 95 0 1 200415 species 27 871007 family 2 0 27 Acidilobus 1 genus 105850 0 2 1 Acidilobus saccharovorans 26 0 1 242703 species 249 Thermoproteales 1 order 2266 13 0 1 2267 family 6 0 165 genus 76886 1 0 31 0 1 76887 species Caldivirga maquilingensis 31 2 0 2270 genus 43 Thermoproteus uzoniensis 25 0 1 184117 species 18 Thermoproteus tenax species 2271 0 1 genus 164450 2 0 60 33 Vulcanisaeta distributa species 164451 0 1 27 Vulcanisaeta moutnovskia species 985052 0 1 1 0 genus 2276 31 species 2277 0 1 31 Pyrobaculum islandicum 83 Thermofilaceae family 114378 1 0 5 6 Thermofilum 78 1 0 5 genus 2268 1 0 1 1483572 species Thermofilum carboxyditrophus 22 Thermofilum uzonense 10 0 1 1550241 species species 1365176 1 0 28 Thermofilum adornatus 17 Thermofilum pendens 2269 species 0 1 1 114380 order 1 0 14 232 Desulfurococcales 1 2307 family 0 4 1 77 Pyrodictiaceae 1 0 2308 genus 18 Pyrodictium delaneyi 18 1 0 1273541 species 25 54251 genus 1 0 Pyrolobus fumarii 25 1 0 54252 species 54247 genus 0 1 33 33 Hyperthermus butylicus species 54248 0 1 154 Desulfurococcaceae 2272 family 1 1 0 9 75 0 2 genus 2279 84599 species 0 1 56 Staphylothermus hellenicus 19 Staphylothermus marinus 2280 species 0 1 29 0 2 genus 54258 Ignicoccus islandicus 10 0 1 species 54259 19 Ignicoccus hospitalis 160233 species 0 1 15 0 1 54253 genus Thermosphaera aggregans 15 0 1 54254 species 477695 genus 1 0 9 Thermogladius calderae 9 1 0 1200300 species 0 2 genus 2273 25 0 1 species 94694 Desulfurococcus amylolyticus 21 4 Desulfurococcus mucosus species 2275 1 0 8 0 order 2281 364 364 8 0 family 118883 1 0 12914 genus 64 Acidianus hospitalis 64 0 1 species 563177 0 1 2100760 genus 48 0 1 species 2287 Sulfolobus solfataricus 48 161 3 0 genus 2284 35 Sulfolobus acidocaldarius 2285 species 0 1 Sulfolobus islandicus 76 0 1 species 43080 0 1 2641160 no rank 50 species 1891280 0 1 50 Sulfolobus sp. A20 1 0 69655 genus 72 72 Sulfolobus tokodaii species 111955 1 0 2 0 genus 41980 19 17 Metallosphaera cuprina 1006005 species 0 1 2 Metallosphaera sedula species 43687 0 1 651137 phylum 9 0 542 161 3 0 no rank 651142 2 0 1825023 genus 84 Candidatus Nitrosotenuis cloacae 42 1 0 1603555 species 0 1 species 1846278 Candidatus Nitrosotenuis sp. AQ6f 42 77 genus 1593364 0 1 1410606 species 0 1 77 Candidatus Nitrosopelagicus brevis 3 0 class 1643678 153 1033996 order 0 1 102 102 family 1033997 0 1 genus 497726 0 1 102 species 1034015 0 1 102 Nitrososphaera viennensis 51 order 1968909 2 0 51 0 2 family 1968910 Candidatus Nitrosocaldus 51 0 2 1 1 genus 498374 50 Candidatus Nitrosocaldus islandicus 2045011 species 0 1 228 order 31932 3 0 338190 family 3 0 228 156 0 2 338191 genus Candidatus Nitrosopumilus adriaticus 79 1 0 1580092 species Candidatus Nitrosopumilus sediminis 77 0 1 1229909 species genus 1993653 1 0 72 72 Candidatus Nitrosomarinus catalina species 1898749 0 1 205 0 28890 phylum 18405 676 2283796 clade 18 0 1 class 183967 0 16 1 612 Thermoplasmata Methanomassiliicoccales 188 0 1 5 1 1235850 order 88 family 2517203 2 0 2 0 2 1 1291539 genus Candidatus Methanomethylophilus 88 Candidatus Methanomethylophilus alvus 86 0 1 species 1291540 2 0 1577788 family 99 1607807 genus 0 1 27 Candidatus Methanoplasma termitum 27 1 0 species 1577791 72 1 0 1080709 genus 1406512 species 0 1 72 Candidatus Methanomassiliicoccus intestinalis 1234666 no rank 1 0 83 0 1 species 1495144 methanogenic archaeon ISO4-H5 83 2301 order 0 9 340 0 2 90142 family 47 47 2 0 74968 genus 0 1 97393 species Ferroplasma acidarmanus 26 21 Ferroplasma acidiphilum species 74969 0 1 40 0 1 1747776 family 40 0 1 genus 1747777 Cuniculiplasma divulgatum 40 0 1 species 1673428 no rank 1919231 0 1 139 0 1 species 1054217 Thermoplasmatales archaeon BRNA1 139 Thermoplasmataceae 63 0 7 3 family 46659 1 0 2 2302 genus 56 Thermoplasma volcanium 20 1 0 species 50339 species 2303 1 0 36 Thermoplasma acidophilum 51 Picrophilaceae 1 46630 family 2 0 1 1 0 genus 46631 50 0 1 species 82076 Picrophilus torridus 50 2 0 1803510 clade 64 genus 379546 2 0 64 22 0 1 no rank 2633939 22 Aciduliprofundum sp. MAR08-339 species 673860 0 1 Aciduliprofundum boonei 42 1 0 species 379547 8441 34 0 clade 2283794 1370 14 0 183939 class 2 0 14 1 order 2182 Methanococcales 1370 family 196117 0 7 500 95 genus 196119 1 0 Methanotorris igneus 95 0 1 species 2189 405 6 0 196118 genus 0 1 species 83171 Methanocaldococcus fervens 68 73913 species 0 1 60 Methanocaldococcus vulcanius 42 Methanocaldococcus infernus 67760 species 0 1 Methanocaldococcus jannaschii 81 0 1 2190 species 1301915 species 0 1 69 Methanocaldococcus bathoardescens 0 1 2641196 no rank 85 644281 species 1 0 85 Methanocaldococcus sp. FS406-22 868 0 6 family 2183 0 1 155862 genus 103 0 1 species 155863 Methanothermococcus okinawensis 103 genus 2184 1 5 0 1 765 Methanococcus 0 1 2187 species Methanococcus vannielii 93 115 Methanococcus aeolicus 42879 species 0 1 Methanococcus maripaludis 497 0 1 species 39152 Methanococcus voltae 59 1 0 species 2188 7071 Methanobacteria class 183925 1 0 3 20 order 2158 19 0 7068 6976 18 0 2159 family 6162 2172 genus 6 0 1 0 294671 species Methanobrevibacter olleyae 179 Methanobrevibacter millerae 148 0 1 species 230361 species 83816 0 1 188 Methanobrevibacter ruminantium 1 0 2173 species Methanobrevibacter smithii 5401 0 2 no rank 2638681 246 0 1 1609968 species Methanobrevibacter sp. YE315 131 Methanobrevibacter sp. AbM4 115 0 1 species 224719 145260 genus 0 4 81 species 145262 0 1 14 Methanothermobacter thermautotrophicus Methanothermobacter marburgensis 19 0 1 145263 species 15 2631116 no rank 1 0 866790 species 1 0 15 Methanothermobacter sp. CaT2 33 Methanothermobacter wolfeii 145261 species 1 0 1 0 2316 genus 190 2317 species 0 1 190 Methanosphaera stadtmanae 2160 genus 0 7 543 Methanobacterium paludis 118 0 1 868131 species 1 0 species 2162 Methanobacterium formicicum 108 59 Methanobacterium subterraneum 59277 species 1 0 Methanobacterium lacus 125 0 1 species 877455 92 no rank 2627676 2 0 48 Methanobacterium sp. MB1 1379702 species 1 0 0 1 1911685 species Methanobacterium sp. MZ-A1 44 Methanobacterium congolense 41 1 0 species 118062 92 1 0 family 2178 1 0 2179 genus 92 species 2180 0 1 92 Methanothermus fervidus Thermococci 1567 1 0 40 1 183968 class Thermococcales 1566 0 3 39 order 2258 1 3 0 38 family 2259 1 Thermococcaceae 1563 0 7 2260 genus 244 Pyrococcus horikoshii 26 0 1 species 53953 1008460 species 1 0 27 Pyrococcus yayanosii 109 0 2 no rank 2629106 Pyrococcus sp. ST04 68 0 1 species 1183377 Pyrococcus sp. NA2 41 0 1 species 342949 0 1 29292 species Pyrococcus abyssi 40 0 1 2261 species Pyrococcus furiosus 27 species 1609559 0 1 15 Pyrococcus kukulkanii 1272 Thermococcus genus 2263 1 6 0 29 55802 species 0 1 79 Thermococcus barophilus 172049 species 1 0 55 Thermococcus sibiricus 35 Thermococcus gammatolerans species 187878 1 0 72803 species 0 1 43 Thermococcus siculi 45 Thermococcus radiotolerans 187880 species 1 0 0 1 species 110164 Thermococcus guaymasensis 42 0 1 54262 species Thermococcus chitonophagus 25 1 0 163003 species Thermococcus cleftensis 64 Thermococcus eurythermalis 31 0 1 species 1505907 2264 species 0 1 56 Thermococcus celer 0 1 species 277988 Thermococcus thioreducens 40 species 53952 1 0 20 Thermococcus peptonophilus 1 0 species 54077 Thermococcus barossii 36 311 2627626 no rank 0 6 56 Thermococcus sp. EXT12c species 2016361 0 1 0 1 species 2008440 Thermococcus sp. 5-4 40 0 1 species 122420 Thermococcus sp. P6 19 24 Thermococcus sp. 2319x1 species 1674923 1 0 1 0 246969 species Thermococcus sp. AM4 96 1042877 species 0 1 76 Thermococcus sp. 4557 Thermococcus pacificus 33 0 1 71998 species 21 Thermococcus kodakarensis species 311400 0 1 2265 species 0 1 41 Thermococcus litoralis 0 1 species 195522 Thermococcus nautili 54 species 71997 1 0 32 Thermococcus gorgonarius 0 1 species 49899 Thermococcus profundus 56 342948 species 1 0 48 Thermococcus onnurineus species 582419 0 1 75 Thermococcus paralvinellae 1712654 species 0 1 24 Thermococcus piezophilus 44 83867 genus 0 1 Palaeococcus pacificus 44 0 1 species 971279 276 0 7 class 183980 276 2231 order 7 0 276 7 0 family 2232 4 0 genus 2233 159 species 58290 0 1 52 Archaeoglobus veneficus 1 0 species 2234 Archaeoglobus fulgidus 26 84156 species 1 0 31 Archaeoglobus profundus 50 Archaeoglobus sulfaticallidus species 1316941 0 1 genus 54260 0 1 14 Ferroglobus placidus 14 0 1 54261 species 103 0 2 190818 genus Geoglobus acetivorans 31 1 0 species 565033 Geoglobus ahangari 72 0 1 113653 species 7445 clade 2290931 106 0 Methanomicrobia 3406 0 46 4 1 224756 class 1 order 94695 26 0 2 2376 Methanosarcinales 22 0 family 2206 2208 genus 2225 0 2 134 2226 species 0 1 81 Methanococcoides methylutens 29291 species 1 0 53 Methanococcoides burtonii Methanosarcina 1604 13 0 3 genus 2207 1 96 Methanosarcina vacuolata species 2215 0 1 species 418008 0 1 149 Methanosarcina horonobensis 169 Methanosarcina mazei species 2209 0 1 67 Methanosarcina thermophila 2210 species 0 1 421 no rank 2644672 4 0 Methanosarcina sp. Kolksee 109 0 1 1434099 species Methanosarcina sp. MTP4 107 0 1 species 1434100 Methanosarcina sp. WH1 98 0 1 1434102 species 0 1 species 1434103 Methanosarcina sp. WWM596 107 0 1 170861 species Methanosarcina lacustris 72 2214 species 0 1 115 Methanosarcina acetivorans 1 0 2208 species Methanosarcina barkeri 349 1 0 species 38027 Methanosarcina siciliae 163 92 1 0 genus 101191 Methanomethylovorans hollandica 92 0 1 101192 species 0 1 3 1 2175 genus Methanohalophilus 121 species 2176 0 1 62 Methanohalophilus mahii species 2177 0 1 58 Methanohalophilus halophilus 76 genus 196136 0 1 39669 species 0 1 76 Methanosalsum zhilinae 1 0 2321 genus 83 Methanohalobium evestigatum 83 0 1 species 2322 98 2220 genus 1 0 0 1 species 420950 Methanolobus psychrophilus 98 family 143067 1 0 3 3 166 Methanosaetaceae 163 genus 2222 0 2 species 301375 0 1 77 Methanosaeta harundinacea Methanothrix soehngenii 86 0 1 species 2223 Methanocellales 217 2 0 5 1 570264 order 1 family 570265 0 4 2 215 Methanocellaceae 213 Methanocella genus 570266 1 1 0 3 species 1175444 0 1 67 Methanocella conradii 145 Methanocella arvoryzae 1175445 species 0 1 14 0 1 order 2191 1 Methanomicrobiales 809 1 0 88404 family 153 0 1 2192 genus 153 0 1 83984 species Methanocorpusculum labreanum 153 268 0 4 1198451 family 168 Methanoregula 1 395331 genus 3 0 1 Methanoregula formicica 93 0 1 882104 species species 358766 1 0 74 Methanoregula boonei 0 1 475087 genus 100 species 475088 0 1 100 Methanosphaerula palustris 313 Methanomicrobiaceae 1 family 2194 0 2 7 Methanolacinia 60 0 2 1 genus 230355 1 Methanolacinia petrolearia 59 0 1 54120 species Methanoculleus 251 4 0 2 genus 45989 1 Methanoculleus marisnigri 75 0 1 2198 species 66 no rank 2619537 1 0 86622 species 1 0 66 Methanoculleus sp. MAB1 0 1 83986 species Methanoculleus bourgensis 108 family 196137 1 0 74 genus 2202 1 0 74 0 1 species 2203 Methanospirillum hungatei 74 60 0 37 183963 class 1 Halobacteria 4039 Haloferacales 1169 0 14 17 order 1644055 1 82 no rank 2678336 0 1 82 halophilic archaeon DL31 species 756883 0 1 544 Haloferacaceae 1 family 1644056 3 0 7 63 genus 60846 1 0 0 1 60847 species Halogeometricum borinquense 63 0 4 7 2251 genus 1 Haloferax 405 Haloferax volcanii 164 0 1 species 2246 0 1 2252 species Haloferax mediterranei 83 0 1 species 35746 Haloferax gibbonsii 151 genus 293431 0 1 73 1 0 species 293091 Haloquadratum walsbyi 73 0 8 4 1963271 family 1 Halorubraceae 529 1 genus 56688 2 0 3 309 Halorubrum 1 0 2247 species Halorubrum lacusprofundi 119 Halorubrum trapanicum 188 0 1 29284 species 0 2 6 1 genus 1209988 Halopenitus 88 species 1048396 1 0 82 Halopenitus persicus Salinigranum 128 0 3 2 genus 1644057 1 755307 species 0 1 125 Salinigranum rubrum 1220 Natrialbales 1 1644060 order 16 0 15 1205 Natrialbaceae 1644061 family 1 13 0 15 2256 genus 0 1 98 98 Natronobacterium gregoryi species 44930 1 0 183 1 0 203193 genus species 229731 1 0 183 Halobiforma lacisalsi genus 353799 1 0 83 353800 species 0 1 83 Halostagnicola larsenii 113 1269201 genus 0 1 113 2621923 no rank 1 0 species 1333523 0 1 113 Salinarchaeum sp. Harcht-Bsk1 3 0 10 1 genus 121871 Haloterrigena 198 62320 species 0 1 135 Haloterrigena turkmenica species 588898 0 1 53 Haloterrigena daqingensis genus 63742 1 0 63 Natrialba magadii 63 1 0 13769 species Natrinema 166 3 0 2 88723 genus 1 1 0 69525 species Natrinema pellirubrum 91 2622230 no rank 1 0 73 1 0 species 406552 Natrinema sp. J7-2 73 1 0 genus 387342 175 0 1 species 387343 Halopiger xanaduensis 175 113 Natronococcus 29287 genus 1 1 0 2 0 1 species 29288 Natronococcus occultus 112 order 2235 1 0 26 19 1613 Halobacteriales 11 0 15 1963268 family 1 Haloarculaceae 1069 110 Halorientalis 1 genus 1073987 0 2 2 2648975 no rank 0 1 108 1932360 species 0 1 108 Halorientalis sp. IM1011 14 0 5 1 genus 2237 Haloarcula 433 117 0 1 no rank 2624677 117 Haloarcula sp. CBA1115 1592728 species 1 0 116 Haloarcula hispanica species 51589 0 1 species 1932004 0 1 68 Haloarcula taiwanensis Haloarcula marismortui 118 0 1 2238 species 1 genus 146825 0 3 1 219 Halorhabdus Halorhabdus tiamatea 95 0 1 species 430914 species 146826 0 1 123 Halorhabdus utahensis genus 63743 2 0 151 species 416273 1 0 65 Natronomonas moolapensis Natronomonas pharaonis 86 1 0 2257 species 203135 genus 1 0 2 2 145 Halomicrobium Halomicrobium mukohataei 143 0 1 57705 species 2236 family 1 0 4 10 525 Halobacteriaceae Halanaeroarchaeum 40 0 2 2 1 genus 1656823 0 1 species 1604004 Halanaeroarchaeum sulfurireducens 38 2239 genus 1 0 4 4 310 Halobacterium Halobacterium hubeiense 121 0 1 1407499 species 84 Halobacterium salinarum 2242 species 0 1 1 0 2668073 no rank 101 0 1 species 751944 Halobacterium sp. DL1 101 71 1980514 genus 1 0 71 Halodesulfurarchaeum formicicum 1873524 species 0 1 0 6 2 1 332246 genus Halalkalicoccus 100 Halalkalicoccus jeotgali 94 0 1 413810 species 11 clade 1783276 1 0 11 1 0 phylum 1801631 11 genus 2490204 0 1 species 1920749 0 1 11 Candidatus Micrarchaeota archaeon Mia14