members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4721 7554589 30 27514 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 1 name 0 0 0 270 superkingdom 2157 44059 Euryarchaeota 1 28890 38731 220 phylum 0 2 183968 1 Thermococci 4505 10 0 class 41 26 0 order 40 4495 1 2258 Thermococcales 0 2 39 family 4469 Thermococcaceae 2259 1 29 genus 0 32 3600 Thermococcus 1 2263 Thermococcus celer 2264 100 0 1 species 365 172049 Thermococcus sibiricus species 1 0 species 1 0 127 110164 Thermococcus guaymasensis 342948 Thermococcus onnurineus 87 0 species 1 0 species 1 93 71998 Thermococcus pacificus 0 species 1 135 2265 Thermococcus litoralis 79 53952 Thermococcus peptonophilus species 1 0 6 no rank 0 445 2627626 1 species 0 56 Thermococcus sp. 5-4 2008440 Thermococcus sp. 4557 1042877 86 1 species 0 species 1 0 1674923 Thermococcus sp. 2319x1 65 0 1 species 82 Thermococcus sp. EXT12c 2016361 88 246969 Thermococcus sp. AM4 species 1 0 1 species 0 Thermococcus sp. P6 122420 68 species 1 0 54262 Thermococcus chitonophagus 150 94 54077 Thermococcus barossii 0 species 1 Thermococcus thioreducens 277988 132 0 1 species 1712654 Thermococcus piezophilus 86 species 1 0 115 195522 Thermococcus nautili species 1 0 222 49899 Thermococcus profundus species 1 0 206 187878 Thermococcus gammatolerans 0 species 1 Thermococcus cleftensis 163003 139 0 1 species 1 species 0 Thermococcus gorgonarius 71997 84 Thermococcus radiotolerans 187880 46 0 1 species 342 Thermococcus barophilus 55802 1 species 0 species 1 0 111 582419 Thermococcus paralvinellae 75 311400 Thermococcus kodakarensis 0 species 1 species 1 0 183 72803 Thermococcus siculi 0 1 species Thermococcus eurythermalis 1505907 152 Pyrococcus 1 2260 806 0 3 8 genus 1 species 0 93 Pyrococcus horikoshii 53953 1 species 0 Pyrococcus kukulkanii 1609559 163 100 2261 Pyrococcus furiosus species 1 0 156 29292 Pyrococcus abyssi 0 species 1 2629106 199 0 no rank 2 species 1 0 80 342949 Pyrococcus sp. NA2 1183377 Pyrococcus sp. ST04 119 0 species 1 92 1008460 Pyrococcus yayanosii 0 species 1 83867 61 genus 1 0 971279 Palaeococcus pacificus 61 0 species 1 clade 111 0 19973 2290931 class 62 22 0 1 183963 Halobacteria 7965 2324 1644060 1 Natrialbales order 17 8 0 Natrialbaceae 1 1644061 2316 16 family 0 29 203193 292 0 1 genus Halobiforma lacisalsi 229731 292 0 1 species Haloterrigena 1 121871 441 3 genus 0 1 289 Haloterrigena turkmenica 62320 0 1 species 588898 Haloterrigena daqingensis 151 species 1 0 2256 149 0 genus 1 Natronobacterium gregoryi 44930 149 0 1 species 2 genus 0 3 Salinarchaeum 1 1269201 183 0 no rank 1 2621923 180 180 1333523 Salinarchaeum sp. Harcht-Bsk1 0 species 1 1 genus 0 246 63742 0 species 1 13769 Natrialba magadii 246 genus 2 3 0 225 387342 1 Halopiger Halopiger xanaduensis 387343 222 1 species 0 genus 1 0 353799 144 species 1 0 144 353800 Halostagnicola larsenii 29287 211 1 genus 0 1 species 0 211 Natronococcus occultus 29288 396 1 88723 Natrinema 6 0 genus 3 0 1 no rank 2622230 231 Natrinema sp. J7-2 406552 231 1 species 0 69525 Natrinema pellirubrum 159 species 1 0 3080 Halobacteriales 1 2235 0 31 26 order 8 0 family 10 916 2236 1 Halobacteriaceae 2239 1 Halobacterium 625 14 0 genus 4 0 1 species Halobacterium salinarum 2242 118 246 2668073 1 no rank 0 0 1 species 246 Halobacterium sp. DL1 751944 0 species 1 1407499 Halobacterium hubeiense 247 124 332246 1 Halalkalicoccus genus 2 1 0 123 413810 Halalkalicoccus jeotgali species 1 0 0 1 2 genus 75 Halodesulfurarchaeum 1980514 1 1 species 0 74 Halodesulfurarchaeum formicicum 1873524 84 1656823 genus 1 0 0 1 species 84 Halanaeroarchaeum sulfurireducens 1604004 0 20 15 family 2133 Haloarculaceae 1963268 1 2 genus 0 3 Halorientalis 1073987 1 406 0 1 no rank 2648975 403 403 1932360 Halorientalis sp. IM1011 species 1 0 genus 5 15 0 988 2237 1 Haloarcula 1932004 Haloarcula taiwanensis 255 0 species 1 1 no rank 0 2624677 258 0 species 1 258 1592728 Haloarcula sp. CBA1115 species 1 0 51589 Haloarcula hispanica 250 0 1 species Haloarcula marismortui 2238 210 220 1 203135 Halomicrobium genus 2 3 0 217 57705 Halomicrobium mukohataei species 1 0 291 Halorhabdus 146825 1 0 1 3 genus 139 Halorhabdus tiamatea 430914 0 1 species 0 species 1 146826 Halorhabdus utahensis 151 0 2 genus 63743 208 0 species 1 2257 Natronomonas pharaonis 110 species 1 0 98 416273 Natronomonas moolapensis 2539 Haloferacales 1 1644055 18 order 0 19 2678336 178 0 1 no rank 178 756883 halophilic archaeon DL31 species 1 0 826 Halorubraceae 1 1963271 0 8 8 family genus 3 4 0 1 56688 Halorubrum 395 species 1 0 202 29284 Halorubrum trapanicum Halorubrum lacusprofundi 2247 189 1 species 0 genus 2 1 0 1 1209988 Halopenitus 163 162 Halopenitus persicus 1048396 0 1 species genus 2 5 0 260 1 1644057 Salinigranum 255 755307 Salinigranum rubrum species 1 0 1644056 1 Haloferacaceae 1516 family 8 7 0 1098 2251 1 Haloferax genus 4 11 0 227 2252 Haloferax mediterranei species 1 0 1 species 0 Haloferax gibbonsii 35746 340 2246 Haloferax volcanii 520 0 species 1 147 293431 genus 1 0 Haloquadratum walsbyi 293091 147 0 1 species 264 Halogeometricum 60846 1 2 genus 0 4 0 1 species Halogeometricum borinquense 60847 260 class 49 48 0 12008 224756 1 Methanomicrobia 7 0 order 14 2635 1 2191 Methanomicrobiales 1 family 0 88404 240 0 genus 1 2192 240 0 species 1 83984 Methanocorpusculum labreanum 240 4 0 family 5 835 1198451 1 Methanoregulaceae 0 1 genus 475087 477 species 1 0 475088 Methanosphaerula palustris 477 354 Methanoregula 1 395331 0 8 3 genus 212 882104 Methanoregula formicica species 1 0 1 species 0 134 Methanoregula boonei 358766 196137 460 0 family 1 460 2202 genus 1 0 1 species 0 460 Methanospirillum hungatei 2203 1093 2194 6 family 0 448 1 230355 Methanolacinia genus 2 2 0 0 1 species Methanolacinia petrolearia 54120 446 45989 1 Methanoculleus 645 genus 4 11 0 0 1 species 206 Methanoculleus marisnigri 2198 Methanoculleus bourgensis 83986 257 0 1 species 1 no rank 0 2619537 171 0 species 1 171 86622 Methanoculleus sp. MAB1 529 570264 1 Methanocellales order 5 11 0 518 570265 1 Methanocellaceae 2 0 family 4 0 1 3 genus 516 Methanocella 1 570266 123 Methanocella conradii 1175444 0 1 species Methanocella arvoryzae 1175445 392 1 species 0 0 14 29 order 8796 Methanosarcinales 1 94695 Methanosarcinaceae 1 2206 8356 24 family 0 53 101191 392 0 1 genus 392 Methanomethylovorans hollandica 101192 0 1 species 0 4 3 genus Methanococcoides 1 2225 409 2226 Methanococcoides methylutens 220 species 1 0 1 species 0 Methanococcoides burtonii 29291 185 307 196136 0 1 genus 0 species 1 307 39669 Methanosalsum zhilinae genus 13 14 0 2207 1 Methanosarcina 5839 Methanosarcina lacustris 170861 469 0 1 species 0 no rank 4 2644672 1422 1 species 0 Methanosarcina sp. WH1 1434102 293 0 1 species Methanosarcina sp. MTP4 1434100 340 1434099 Methanosarcina sp. Kolksee 529 0 species 1 Methanosarcina sp. WWM596 1434103 260 1 species 0 421 2214 Methanosarcina acetivorans 0 species 1 Methanosarcina horonobensis 418008 412 0 1 species 0 species 1 335 38027 Methanosarcina siciliae 0 1 species 549 Methanosarcina vacuolata 2215 184 Methanosarcina thermophila 2210 1 species 0 1 species 0 700 Methanosarcina mazei 2209 1333 2208 Methanosarcina barkeri species 1 0 0 genus 1 2220 190 1 species 0 Methanolobus psychrophilus 420950 190 0 1 3 genus 644 Methanohalophilus 1 2175 Methanohalophilus halophilus 2177 263 0 1 species Methanohalophilus mahii 2176 380 0 1 species genus 1 0 2321 522 522 2322 Methanohalobium evestigatum 0 species 1 426 143067 1 Methanosaetaceae family 4 2 0 2222 1 Methanothrix 424 genus 3 1 0 226 301375 Methanosaeta harundinacea 0 species 1 1 species 0 197 Methanothrix soehngenii 2223 10933 2283794 clade 38 0 class 15 4 0 4983 183939 1 Methanococci 0 10 14 order 4979 Methanococcales 1 2182 2183 3221 0 family 5 genus 1 0 155862 362 0 1 species Methanothermococcus okinawensis 155863 362 2184 2859 0 4 genus Methanococcus aeolicus 42879 189 1 species 0 species 1 0 2188 Methanococcus voltae 485 1 species 0 Methanococcus vannielii 2187 322 0 species 1 39152 Methanococcus maripaludis 1863 1748 196117 0 family 8 0 1 2 genus Methanotorris 196119 1 142 Methanotorris igneus 2189 141 1 species 0 6 genus 0 196118 1606 364 2190 Methanocaldococcus jannaschii species 1 0 1 no rank 0 218 2641196 species 1 0 644281 Methanocaldococcus sp. FS406-22 218 172 73913 Methanocaldococcus vulcanius species 1 0 0 1 species 176 Methanocaldococcus infernus 67760 0 1 species 312 Methanocaldococcus bathoardescens 1301915 364 83171 Methanocaldococcus fervens 0 species 1 Methanobacteria 1 183925 5950 23 class 0 2 22 order 0 5948 2158 1 2159 Methanobacteriaceae 5781 family 21 1 0 8 genus 0 1 Methanobacterium 2160 1 1753 Methanobacterium formicicum 2162 178 0 1 species species 1 0 268 118062 Methanobacterium congolense 0 species 1 255 868131 Methanobacterium paludis 1 species 0 Methanobacterium lacus 877455 496 2 no rank 0 378 2627676 species 1 0 1379702 Methanobacterium sp. MB1 157 221 1911685 Methanobacterium sp. MZ-A1 0 species 1 0 species 1 59277 Methanobacterium subterraneum 177 0 5 7 genus 3158 Methanobrevibacter 1 2172 2638681 706 no rank 2 0 0 species 1 440 1609968 Methanobrevibacter sp. YE315 0 1 species 266 Methanobrevibacter sp. AbM4 224719 0 1 species 933 Methanobrevibacter smithii 2173 0 1 species 399 Methanobrevibacter ruminantium 83816 0 1 species Methanobrevibacter millerae 230361 616 1 species 0 Methanobrevibacter olleyae 294671 499 2316 525 genus 1 0 0 species 1 2317 Methanosphaera stadtmanae 525 145260 344 0 4 genus 99 145261 Methanothermobacter wolfeii species 1 0 145262 Methanothermobacter thermautotrophicus 74 species 1 0 0 1 species 59 Methanothermobacter marburgensis 145263 2631116 112 1 no rank 0 species 1 0 112 866790 Methanothermobacter sp. CaT2 0 1 family 167 2178 2179 167 0 genus 1 167 Methanothermus fervidus 2180 1 species 0 class 9 0 183980 921 0 9 order 921 2231 921 2232 0 9 family 0 1 5 genus Archaeoglobus 2233 1 446 76 Archaeoglobus profundus 84156 1 species 0 species 1 0 216 1316941 Archaeoglobus sulfaticallidus 55 58290 Archaeoglobus veneficus species 1 0 1 species 0 98 Archaeoglobus fulgidus 2234 2 genus 0 1 245 Ferroglobus 54260 1 0 species 1 54261 Ferroglobus placidus 244 0 2 genus 190818 230 0 1 species 121 Geoglobus ahangari 113653 species 1 0 109 565033 Geoglobus acetivorans 0 clade 20 2283796 2397 1960 Thermoplasmata 1 183967 17 class 0 12 order 10 2 0 1049 1 2301 Thermoplasmatales 46630 145 0 1 family 1 genus 0 46631 145 82076 Picrophilus torridus 145 species 1 0 248 1919231 no rank 1 0 Thermoplasmatales archaeon BRNA1 1054217 248 0 1 species 90142 289 0 3 family Ferroplasma 74968 1 289 0 1 3 genus 158 Ferroplasma acidarmanus 97393 0 1 species 130 Ferroplasma acidiphilum 74969 0 1 species 248 1747776 0 family 2 248 Cuniculiplasma 1 1747777 0 3 2 genus 0 species 1 245 1673428 Cuniculiplasma divulgatum 0 2 family 46659 117 genus 2 0 117 2302 50339 Thermoplasma volcanium 45 0 species 1 0 1 species Thermoplasma acidophilum 2303 72 519 Methanomassiliicoccales 1 1235850 5 order 0 2 family 2 0 1577788 268 0 genus 1 138 1607807 species 1 0 1577791 Candidatus Methanoplasma termitum 138 1 genus 0 130 1080709 Candidatus Methanomassiliicoccus intestinalis 1406512 130 0 1 species family 2 0 2517203 249 0 3 2 genus 249 Candidatus Methanomethylophilus 1291539 1 1 species 0 Candidatus Methanomethylophilus alvus 1291540 246 0 1 no rank 1234666 380 1495144 methanogenic archaeon ISO4-H5 380 0 species 1 0 3 clade 1803510 437 437 379546 1 Aciduliprofundum 1 0 genus 3 no rank 1 0 2633939 277 species 1 0 277 673860 Aciduliprofundum sp. MAR08-339 379547 Aciduliprofundum boonei 159 species 1 0 1783276 189 clade 1 0 1801631 189 0 phylum 1 189 2490204 0 1 genus 0 1 species Candidatus Micrarchaeota archaeon Mia14 1920749 189 1783275 5139 clade 49 0 8 phylum 0 1238 651137 order 3 0 702 31932 702 338190 0 family 3 genus 2 0 338191 527 Candidatus Nitrosopumilus sediminis 1229909 212 1 species 0 315 1580092 Candidatus Nitrosopumilus adriaticus 0 species 1 175 1993653 1 genus 0 175 1898749 Candidatus Nitrosomarinus catalina 0 species 1 2 class 0 146 1643678 81 1033996 0 1 order 1033997 81 0 family 1 genus 1 0 497726 81 0 1 species 81 Nitrososphaera viennensis 1034015 0 order 1 65 1968909 0 family 1 1968910 65 0 1 genus 498374 65 1 species 0 65 Candidatus Nitrosocaldus islandicus 2045011 0 no rank 3 390 651142 1593364 189 0 1 genus 1 species 0 189 Candidatus Nitrosopelagicus brevis 1410606 0 genus 2 201 1825023 0 species 1 1846278 Candidatus Nitrosotenuis sp. AQ6f 71 1603555 Candidatus Nitrosotenuis cloacae 130 species 1 0 1 phylum 0 51967 34 1 genus 0 498845 34 Candidatus Korarchaeum cryptofilum 498846 34 1 species 0 3867 28889 40 phylum 0 Thermoprotei 1 183924 3867 40 class 0 11 379 871006 0 order 2 330 255472 0 1 family 200414 330 0 1 genus 1 species 0 Caldisphaera lagunensis 200415 330 0 1 family 871007 49 1 genus 0 49 105850 Acidilobus saccharovorans 242703 49 1 species 0 907 2266 0 order 15 5 family 0 457 114378 Thermofilum 1 2268 457 5 genus 0 34 Thermofilum adornatus 1365176 120 1 species 0 1550241 Thermofilum uzonense 44 0 species 1 0 1 species 103 Thermofilum pendens 2269 1483572 Thermofilum carboxyditrophus 156 0 species 1 450 Thermoproteaceae 1 2267 10 family 0 2 1 2276 Pyrobaculum 121 genus 2 1 0 Pyrobaculum islandicum 2277 120 0 1 species 145 2270 1 Thermoproteus genus 3 1 0 Thermoproteus tenax 2271 85 1 species 0 0 1 species Thermoproteus uzoniensis 184117 59 74 76886 genus 1 0 species 1 0 76887 Caldivirga maquilingensis 74 Vulcanisaeta 1 164450 108 0 1 3 genus species 1 0 164451 Vulcanisaeta distributa 42 0 species 1 65 985052 Vulcanisaeta moutnovskia 2281 1976 10 order 0 1976 118883 1 Sulfolobaceae 3 0 family 10 325 12914 0 genus 1 0 species 1 563177 Acidianus hospitalis 325 84 2100760 1 genus 0 1 species 0 84 Sulfolobus solfataricus 2287 61 41980 2 genus 0 species 1 0 1006005 Metallosphaera cuprina 35 0 species 1 43687 Metallosphaera sedula 26 genus 4 4 0 920 2284 1 Sulfolobus 0 no rank 1 311 2641160 1 species 0 Sulfolobus sp. A20 1891280 311 2285 Sulfolobus acidocaldarius 261 species 1 0 0 1 species Sulfolobus islandicus 43080 344 583 69655 0 1 genus 0 1 species Sulfolobus tokodaii 111955 583 1 0 order 12 114380 1 Desulfurococcales 594 2272 460 8 family 0 44 54253 1 genus 0 0 1 species 44 Thermosphaera aggregans 54254 90 2273 2 genus 0 species 1 0 94694 Desulfurococcus amylolyticus 77 species 1 0 13 2275 Desulfurococcus mucosus genus 2 0 170 2279 0 species 1 2280 Staphylothermus marinus 99 71 84599 Staphylothermus hellenicus species 1 0 1 genus 0 33 477695 1 species 0 33 Thermogladius calderae 1200300 0 genus 2 123 54258 100 Ignicoccus islandicus 54259 1 species 0 160233 Ignicoccus hospitalis 23 species 1 0 133 2307 family 3 0 1 genus 0 85 2308 1 species 0 Pyrodictium delaneyi 1273541 85 54251 32 0 1 genus 0 species 1 54252 Pyrolobus fumarii 32 54247 16 1 genus 0 54248 Hyperthermus butylicus 16 0 species 1 7483016 Bacteria 2 1 4420 superkingdom 0 61 4 phylum 0 1509 68297 203486 1509 0 4 class 0 4 order 203487 1509 1 0 family 4 1 203488 Dictyoglomaceae 1509 0 1 3 genus Dictyoglomus 13 1 1508 species 1 0 794 513050 Dictyoglomus turgidum 713 14 Dictyoglomus thermophilum 0 species 1 0 phylum 23 200783 4496 3 0 class 23 4496 187857 1 Aquificae 745 Desulfurobacteriales 1485951 1 5 order 0 5 1 558314 Desulfurobacteriaceae 740 2 0 family 4 235 171868 0 genus 1 species 1 0 228745 Thermovibrio ammonificans 235 2 genus 0 1 503 Desulfurobacterium 64159 1 502 64160 Desulfurobacterium thermolithotrophum 0 species 1 Aquificales 1 32069 3748 0 4 17 order family 11 6 0 1631 1 64898 Aquificaceae genus 1 0 237 2713 0 species 1 237 63363 Aquifex aeolicus 1016 Hydrogenobaculum 1 168657 6 genus 0 23 2622382 993 0 no rank 5 547146 Hydrogenobaculum sp. SN 187 species 1 0 0 1 species Hydrogenobaculum sp. HO 547144 187 380749 Hydrogenobaculum sp. Y04AAS1 245 0 species 1 Hydrogenobaculum sp. 3684 547143 187 1 species 0 0 1 species 187 Hydrogenobaculum sp. SHO 547145 211 75905 genus 2 0 75906 Thermocrinis ruber 102 species 1 0 109 136094 Thermocrinis albus species 1 0 161 939 0 1 genus 161 940 Hydrogenobacter thermophilus 0 species 1 0 1 no rank 334 90150 412592 334 genus 1 0 species 1 0 334 412593 Thermosulfidibacter takaii 4 family 0 224027 1779 0 genus 2 212790 1085 601 2619248 0 1 no rank Sulfurihydrogenibium sp. YO3AOP1 436114 601 1 species 0 1 species 0 484 Sulfurihydrogenibium azorense 309806 genus 2 1 0 182899 1 Persephonella 694 1 species 0 Persephonella marina 309805 693 0 phylum 25 36082 32066 203490 1 Fusobacteriia 36082 34 0 class 25 36048 Fusobacteriales 203491 1 24 order 0 32 0 52 12 family Fusobacteriaceae 203492 1 28729 1 167639 Ilyobacter 1214 genus 2 1 0 species 1 0 1213 167642 Ilyobacter polytropus 27463 848 1 Fusobacterium genus 9 54 0 1757 861 Fusobacterium ulcerans 0 species 1 Fusobacterium varium 856 3297 0 1 species species 1 0 3348 850 Fusobacterium mortiferum 5188 Fusobacterium periodonticum 860 1 species 0 0 1 species 1728 Fusobacterium gonidiaformans 849 0 species 1 8277 851 Fusobacterium nucleatum 1583098 Fusobacterium hwasookii 2521 0 species 1 0 species 1 859 Fusobacterium necrophorum 1293 family 11 5 0 1129771 1 Leptotrichiaceae 7287 Sneathia 168808 1 1228 0 2 2 genus 1 species 0 1226 Sneathia amnii 187101 0 1 genus 1272 32068 0 species 1 1272 826 Sebaldella termitidis Streptobacillus 34104 1 1119 0 1 2 genus 0 1 species 1118 Streptobacillus moniliformis 34105 32067 1 Leptotrichia 3663 genus 5 5 0 no rank 3 0 2633022 2827 897 712368 Leptotrichia sp. oral taxon 498 0 species 1 902 Leptotrichia sp. oral taxon 847 1785996 1 species 0 Leptotrichia sp. oral taxon 212 712357 1028 1 species 0 0 species 1 40542 Leptotrichia buccalis 831 37118 203691 0 phylum 57 37118 203692 1 Spirochaetia class 57 59 0 order 8 0 3017 1643688 0 8 family 170 3017 346 338321 1 Turneriella 1 0 genus 2 Turneriella parva 29510 345 1 species 0 6 genus 0 10 2671 Leptospira 171 1 Leptospira interrogans 173 1198 1 species 0 species 1 0 336 174 Leptospira borgpetersenii 0 1 species Leptospira biflexa 172 455 303 Leptospira santarosai 28183 0 1 species 28452 Leptospira alstonii 369 species 1 0 1 1643686 Brachyspirales 11983 order 7 2 0 11981 1 143786 Brachyspiraceae family 6 1049 0 922 0 genus 5 29521 1 Brachyspira 10932 Brachyspira intermedia 84377 1996 1 species 0 52584 Brachyspira pilosicoli 3608 species 1 0 1362 Brachyspira murdochii 84378 0 1 species 3044 Brachyspira hyodysenteriae 159 1 species 0 order 41 325 0 136 1 Spirochaetales 22059 6048 Borreliaceae 1643685 1 0 2 17 family genus 8 5 0 1 138 Borrelia 2656 1 species 0 245 Borrelia parkeri 141 143 Borrelia anserina 219 species 1 0 760 Borrelia miyamotoi 47466 0 1 species 334 Borrelia hermsii 140 1 species 0 266 44449 Borrelia recurrentis 0 species 1 142 Borrelia turicatae 444 0 species 1 383 40834 Borrelia duttonii 0 species 1 Borreliella 1 64895 3390 8 genus 0 163 0 species 1 664662 Borreliella bavariensis 234 0 species 1 62088 Borreliella valaisiana 288 1 species 0 333 Borrelia mayonii 1674146 species 1 0 29519 Borreliella garinii 710 1 species 0 430 Borreliella bissettii 64897 1 species 0 Borreliella afzelii 29518 391 species 1 0 139 Borreliella burgdorferi 841 15686 1 137 Spirochaetaceae family 23 58 0 51 0 genus 12 1 157 Treponema 9956 0 species 1 1746 167 Treponema succinifaciens 1 species 0 657 Treponema primitia 88058 798 Treponema denticola 158 0 1 species 0 species 1 1283 81028 Treponema brennaborense 0 species 1 409322 Treponema pedis 1120 species 1 0 221027 Treponema putidum 1273 1 species 0 Treponema pallidum 160 98 99 Treponema paraluiscuniculi 53435 0 1 species 2638727 1193 0 1 no rank 1539298 Treponema sp. OMZ 838 1193 0 species 1 1 species 0 641 Treponema azotonutricium 150829 997 Treponema caldarium 215591 0 1 species Spirochaeta 146 1 1464 3 genus 0 12 0 species 1 154 Spirochaeta thermophila 771 46355 Spirochaeta africana 681 species 1 0 1 399320 Sphaerochaeta 2532 6 0 genus 4 species 1 0 273376 Sphaerochaeta coccoides 689 species 1 0 1131703 Sphaerochaeta globosa 1150 1131707 Sphaerochaeta pleomorpha 687 0 species 1 0 1 genus 657 1616789 1 species 0 657 Salinispira pacifica 1307761 1019 1911556 1 Sediminispirochaeta genus 2 2 0 1017 55206 Sediminispirochaeta smaragdinae 0 species 1 3043934 1783270 376 clade 0 65842 2386 0 phylum 5 0 1 5 class Fibrobacteria 1 204430 2386 2385 1 218872 Fibrobacterales order 4 7 0 2 0 family 3 1 204431 Fibrobacteraceae 2378 0 1 2 genus 2376 Fibrobacter 1 832 species 1 0 833 Fibrobacter succinogenes 2375 phylum 8 0 2218 142182 class 8 10 0 219685 1 Gemmatimonadetes 2218 1 219686 Gemmatimonadales 2208 73 0 order 7 0 20 6 family Gemmatimonadaceae 219687 1 2135 1 173479 Gemmatimonas 1042 9 0 genus 3 173480 Gemmatimonas aurantiaca 492 species 1 0 Gemmatimonas phototrophica 1379270 541 1 species 0 genus 2 1 0 1073 1706036 1 Gemmatirosa 0 1 species 1072 Gemmatirosa kalamazoonesis 861299 362 clade 0 68336 3038020 976 1 Bacteroidetes 3024587 83 0 phylum 334 16 class 0 8 Chitinophagia 1853228 1 16069 16061 1 1853229 Chitinophagales order 15 19 0 14 family 0 120 16042 Chitinophagaceae 1 563835 0 1 genus 1282 1769012 2636138 1282 no rank 1 0 1850526 Arachidicoccus sp. BS20 1282 0 species 1 8 0 genus 2 1439 398041 1 Flavisolibacter Flavisolibacter tropicus 1492898 1431 0 1 species 3 genus 0 14 2253 Niabella 379899 1 1 species 0 1213 Niabella soli 446683 1 species 0 Niabella ginsenosidivorans 1176587 1026 1 354354 Niastella 3808 genus 2 7 0 3801 354356 Niastella koreensis species 1 0 5007 Chitinophaga 1 79328 0 9 3 genus 2874 Chitinophaga pinensis 79329 0 1 species 2124 2029983 Chitinophagaceae bacterium 13 0 species 1 0 2 2 genus Filimonas 1 649460 2133 477680 Filimonas lacunae 2131 species 1 0 class 24 12 0 32929 117747 1 Sphingobacteriia 32917 Sphingobacteriales 200666 1 0 33 23 order 32884 1 84566 Sphingobacteriaceae family 22 29 0 5012 423349 1 Mucilaginibacter 48 0 genus 4 0 no rank 1 1544 2617802 1300914 Mucilaginibacter sp. PAMC 26640 1544 0 species 1 1 species 0 1726 Mucilaginibacter sp. BJC16-A31 1234841 1694 Mucilaginibacter gotjawali 1550579 1 species 0 2498 84568 0 1 no rank 0 species 1 2498 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 9617 1 84567 Pedobacter genus 6 62 0 1769 2628915 0 1 no rank 1727164 Pedobacter sp. PACM 27299 1769 0 species 1 species 1 0 430522 Pedobacter steynii 2305 species 1 0 1932 984 Pedobacter heparinus 363852 Pedobacter ginsengisoli 1790 0 species 1 0 species 1 1759 188932 Pedobacter cryoconitis 6 genus 0 31 Sphingobacterium 1 28453 11066 Sphingobacterium mizutaii 1010 1580 1 species 0 9455 2609468 4 no rank 0 1583 Sphingobacterium sp. ML3W 1538644 1 species 0 0 1 species Sphingobacterium sp. G1-14 2003121 2368 Sphingobacterium sp. B29 1933220 2976 1 species 0 0 1 species 2528 Sphingobacterium sp. 21 743722 genus 2 5 0 2120 1649482 1 Pseudopedobacter species 1 0 151895 Pseudopedobacter saltans 2115 Solitalea 1 929509 2542 2 genus 0 2 995 Solitalea canadensis 2540 species 1 0 6 class 0 5 Saprospiria 1 1937959 2333 0 1 5 order 2328 Saprospirales 1 1936988 family 2 0 605 89374 605 1007 1 Saprospira genus 2 1 0 Saprospira grandis 1008 604 1 species 0 1937961 1722 2 family 0 0 5 2 genus Haliscomenobacter 2349 1 1722 2350 Haliscomenobacter hydrossis 1717 0 species 1 class 72 155 0 200643 1 Bacteroidia 2732588 171549 1 Bacteroidales 2722426 348 0 order 60 171550 1 Rikenellaceae 39648 5 0 family 5 Mucinivorans 1611681 1 2705 0 4 2 genus Mucinivorans hirudinis 1433126 2701 1 species 0 187 0 genus 2 36938 1 239759 Alistipes species 1 0 36751 214856 Alistipes finegoldii 185291 2868 0 no rank 1 species 1 0 1400053 Bacteroidales bacterium CF 2868 0 12 3 family 5978 Paludibacteraceae 1 2005523 0 5 2 genus Paludibacter 346096 1 5966 185300 Paludibacter propionicigenes 5961 0 species 1 7 family 0 165 724688 Tannerellaceae 2005525 1 46 0 genus 3 1 195950 Tannerella 19927 0 species 1 28112 Tannerella forsythia 11926 2620507 7955 0 1 no rank species 1 0 7955 712710 Tannerella sp. oral taxon HOT-286 360 0 genus 3 375288 1 Parabacteroides 704596 no rank 1 0 2649774 372236 372236 Parabacteroides sp. CT06 2025876 1 species 0 332000 823 Parabacteroides distasonis 0 species 1 family 11 56 0 570179 1 815 Bacteroidaceae Bacteroides 1 816 570123 10 genus 0 13460 species 1 0 44119 246787 Bacteroides cellulosilyticus 0 1 species 36726 Bacteroides caccae 47678 Bacteroides ovatus 28116 48833 1 species 0 202294 818 Bacteroides thetaiotaomicron species 1 0 0 1 species Bacteroides caecimuris 1796613 55934 0 1 species 29568 Bacteroides helcogenes 290053 28113 Bacteroides heparinolyticus 22261 0 species 1 1 species 0 92252 Bacteroides fragilis 817 0 1 species 24676 Bacteroides zoogleoformans 28119 2005520 1 Dysgonamonadaceae 16306 family 7 2 0 5457 307628 1 Petrimonas 10 0 genus 2 0 species 1 1642646 Petrimonas mucosa 5447 4 0 genus 2 1 1784836 Fermentimonas 3628 1562970 Fermentimonas caenicola 3624 species 1 0 7219 Proteiniphilum 294702 1 2 genus 0 68 7151 1642647 Proteiniphilum saccharofermentans species 1 0 929053 Prevotellaceae 171552 1 11 family 0 115 genus 10 1274 0 1 838 Prevotella 928938 1 species 0 Prevotella jejuni 1177574 128859 1 species 0 141374 Prevotella ruminicola 839 species 1 0 52227 Prevotella dentalis 81121 28132 Prevotella melaninogenica 136698 species 1 0 1 species 0 Prevotella denticola 28129 83441 species 1 0 76123 Prevotella enoeca 45589 0 species 1 117512 589436 Prevotella fusca 166113 28131 Prevotella intermedia species 1 0 26957 2638335 no rank 1 0 0 species 1 26957 652716 Prevotella sp. oral taxon 299 67 0 family 4 171551 1 Porphyromonadaceae 23780 24 0 genus 3 836 1 Porphyromonas 23713 0 species 1 5564 28123 Porphyromonas asaccharolytica 1 species 0 Porphyromonas gingivalis 837 18125 0 2 family 1853231 57628 283168 1 Odoribacter 57628 58 0 genus 2 Odoribacter splanchnicus 28118 57570 0 1 species 5 no rank 0 313970 333046 1 511434 Candidatus Azobacteroides 1337 3 0 genus 2 1334 511435 Candidatus Azobacteroides pseudotrichonymphae 0 species 1 0 3 genus 312633 909656 43727 376805 Bacteroides salanitronis 0 species 1 0 1 species 219241 Bacteroides vulgatus 821 357276 Bacteroides dorei 49665 species 1 0 3 family 0 19 37980 Barnesiellaceae 1 2005519 21 0 genus 2 37961 1 397864 Barnesiella 397865 Barnesiella viscericola 37940 species 1 0 10007 Marinilabiliales 1 1970189 11 order 0 6 2661 1 1573805 Marinifilaceae 5 0 family 2 genus 1 0 2060722 2656 2656 1717717 Marinifilaceae bacterium SPP2 0 species 1 23 0 family 3 1 1471398 Prolixibacteraceae 3432 3409 1 1471399 Draconibacterium genus 2 10 0 Draconibacterium orientale 1168034 3399 1 species 0 3 family 0 33 2633 Marinilabiliaceae 558415 1 2600 1193324 1 Alkalitalea genus 2 1 0 2599 889453 Alkalitalea saponilacus species 1 0 1970190 1 Salinivirgaceae 1275 12 0 family 2 1970191 1263 0 1 genus 1263 Salinivirga cyanobacteriivorans 1307839 1 species 0 22 0 order 6 3093 1100069 1 Bacteroidetes Order II. Incertae sedis 3071 563843 1 Rhodothermaceae family 5 47 0 no rank 1 0 1118 1196022 species 1 0 1118 1779382 Rhodothermaceae bacterium RA genus 2 23 0 1153 29548 1 Rhodothermus 0 1 species Rhodothermus marinus 29549 1130 753 146918 genus 1 0 0 1 species 753 Salinibacter ruber 146919 173705 Flavobacteriia 1 117743 149 class 0 53 order 148 134 0 200644 1 Flavobacteriales 173652 1840 1 1853230 Crocinitomicaceae family 3 2 0 0 177 2 genus 1838 Fluviicola 1 332102 0 species 1 191579 Fluviicola taffensis 1661 117980 Flavobacteriaceae 1 49546 106 family 0 721 0 6 4 genus Cellulophaga 1 104264 3733 76594 Cellulophaga baltica 1291 0 species 1 0 1 species 912 Cellulophaga algicola 59600 0 species 1 1524 979 Cellulophaga lytica 1 292691 Gramella 5803 genus 5 8 0 1486245 Gramella flava 1575 species 1 0 1913577 Gramella sp. LPB0144 898 0 species 1 1375 2126553 Gramella sp. SH35 0 species 1 species 1 0 1947 411153 Gramella forsetii 1 genus 0 1078 83612 species 1 0 1078 57029 Psychroflexus torquis 1795 1 112040 Zobellia 2 0 genus 2 species 1 0 63186 Zobellia galactanivorans 1793 genus 5 12 0 252356 1 Maribacter 5102 0 3 no rank 4049 2615042 species 1 0 1899 1644130 Maribacter sp. 1_2014MBL_MicDiv species 1 0 1836467 Maribacter sp. T28 1209 Maribacter sp. HTCC2170 313603 941 1 species 0 1041 1178778 Maribacter cobaltidurans 0 species 1 1209327 934 genus 1 0 934 Flavivirga eckloniae 1803846 1 species 0 2 genus 0 1 Wenyingzhuangia 1518147 1 1566 1 species 0 1565 Wenyingzhuangia fucanilytica 1790137 153265 1225 genus 1 0 1225 101385 Aequorivita sublithincola 0 species 1 2 genus 0 2 Olleya 336276 1 775 1 no rank 0 773 2615019 Olleya sp. Bg11-27 2058135 773 1 species 0 genus 4 81 0 2968 1 326319 Dokdonia 1 species 0 Dokdonia donghaensis 326320 1413 0 no rank 2 2615033 1474 0 1 species Dokdonia sp. 4H-3-7-5 983548 665 species 1 0 809 313590 Dokdonia sp. MED134 1006 1 358023 Lutibacter 2 0 genus 2 Lutibacter profundi 1622118 1004 0 1 species Algibacter 1 261827 929 0 1 2 genus Algibacter alginicilyticus 1736674 928 0 1 species 0 1 2 genus Seonamhaeicola 1 1649495 1710 2622645 1709 0 1 no rank 1709 1936081 Seonamhaeicola sp. S2-3 0 species 1 0 1 genus 932 389486 0 1 no rank 932 2648869 0 1 species Sediminicola sp. YIK13 1453352 932 no rank 2 0 61432 1948 0 1 species Flavobacteriaceae bacterium 3519-10 531844 722 1 species 0 Flavobacteriaceae bacterium UJ101 1150389 1226 216431 968 genus 1 0 1 species 0 968 Croceibacter atlanticus 313588 1 286104 Winogradskyella 2123 10 0 genus 3 0 2 no rank 2615021 2113 species 1 0 978 1936080 Winogradskyella sp. J14-2 Winogradskyella sp. PG-2 754409 1135 0 1 species 0 184 9 genus 13139 Flavobacterium 237 1 1 species 0 Flavobacterium indicum 312277 1123 1583 Flavobacterium commune 1306519 1 species 0 96345 Flavobacterium psychrophilum 1196 species 1 0 986 Flavobacterium johnsoniae 3761 species 1 0 1 species 0 1062 Flavobacterium crassostreae 1763534 1492737 Flavobacterium gilvum 1313 species 1 0 0 species 1 55197 Flavobacterium branchiophilum 826 Flavobacterium columnare 996 2091 0 1 species 15 genus 0 251 Capnocytophaga 1 1016 30593 species 1 0 1019 Capnocytophaga sputigena 3439 1 species 0 Capnocytophaga stomatis 1848904 1537 3698 Capnocytophaga leadbetteri 327575 1 species 0 0 1 species Capnocytophaga ochracea 1018 2015 Capnocytophaga cynodegmi 28189 789 0 1 species 6 no rank 0 2640652 10896 0 1 species 1803 Capnocytophaga sp. ChDC OS43 209053 Capnocytophaga sp. oral taxon 864 1316593 1821 1 species 0 0 species 1 1632 1705617 Capnocytophaga sp. oral taxon 323 species 1 0 985 1945658 Capnocytophaga sp. H4358 species 1 0 1316596 Capnocytophaga sp. oral taxon 878 3602 1053 Capnocytophaga sp. H2931 1945657 1 species 0 1017 Capnocytophaga gingivalis 4331 species 1 0 45243 Capnocytophaga haemolytica 2181 0 species 1 0 species 1 1456 28188 Capnocytophaga canimorsus 1362 Salegentibacter 143222 1 2 genus 0 1 no rank 1 0 2633436 1361 0 species 1 1361 1729720 Salegentibacter sp. T436 1 genus 0 912 2700084 1 species 0 912 Lutibacter sp. LPB0138 1850246 genus 5 12 0 1 363408 Nonlabens 4891 319236 Nonlabens sediminis 1187 0 species 1 1182 Nonlabens dokdonensis 328515 0 1 species 2510 2615035 0 2 no rank Nonlabens sp. MIC269 1476901 1274 0 1 species 0 1 species Nonlabens sp. MB-3u-79 2058134 1236 0 1 genus 965 1204360 1 species 0 Siansivirga zeaxanthinifaciens 762954 965 1 225842 Formosa 1478 genus 3 16 0 2644710 1462 0 no rank 2 Formosa sp. Hel1_33_131 1336794 771 1 species 0 1 species 0 691 Formosa sp. Hel3_A1_48 1336795 0 genus 1 417127 1610 Zunongwangia profunda 398743 1610 1 species 0 1176327 659 0 1 genus 0 no rank 1 659 2636237 0 species 1 659 2094025 Aureitalea sp. RR4-38 genus 3 33 0 2363 111500 1 Muricauda 1643 111501 Muricauda ruestringensis 0 species 1 687 516051 Muricauda lutaonensis 0 species 1 1597 393005 1 Tamlana 1 0 genus 2 1596 2069432 Tamlana sp. UJ94 species 1 0 Myroides 76831 1 6454 0 126 5 genus 1700 480520 Myroides profundi 0 species 1 1 species 0 2201 Myroides odoratimimus 76832 2642485 2427 2 no rank 0 1068 1458492 Myroides sp. ZB35 species 1 0 species 1 0 1583100 Myroides sp. A21 1359 genus 1 0 955 178469 0 1 species Arenibacter algicola 616991 955 0 1 genus 252306 1312 Robiginitalea biformata 252307 1312 1 species 0 5 genus 0 13 5164 Tenacibaculum 1 104267 0 1 species 1719 Tenacibaculum jejuense 584609 Tenacibaculum maritimum 107401 1305 0 1 species 1 species 0 Tenacibaculum dicentrarchi 669041 1208 1850252 Tenacibaculum todarodis 919 0 species 1 Polaribacter 52959 1 6478 0 10 6 genus 0 1 species Polaribacter vadi 1774273 1663 0 3 no rank 196858 3397 species 1 0 313598 Polaribacter sp. MED152 1036 1148 Polaribacter sp. BM10 1529069 0 1 species 1213 Polaribacter sp. ALD11 2058137 0 1 species 1408 996801 Polaribacter reichenbachii 0 species 1 291183 1 Lacinutrix 2732 1 0 genus 4 2647285 1842 0 2 no rank 0 species 1 983544 Lacinutrix sp. 5H-3-7-4 938 904 Lacinutrix sp. Bg11-31 2057808 0 1 species species 1 0 889 1486034 Lacinutrix venerupis 2762318 48881 0 22 family genus 2 1 0 1013 1 Weeksella 1144 1143 1014 Weeksella virosa 0 species 1 2612 Riemerella 34084 1 2 genus 0 1 species 1 0 2611 34085 Riemerella anatipestifer 10775 Elizabethkingia 1 308865 0 136 6 genus Elizabethkingia genomosp. 3 1756149 1098 1 species 0 1756150 Elizabethkingia genomosp. 4 1165 0 species 1 0 species 1 1876 172045 Elizabethkingia miricola 1117645 Elizabethkingia anophelis 4911 species 1 0 1 species 0 1589 Elizabethkingia meningoseptica 238 2782232 29425 10 no rank 0 1 59732 Chryseobacterium 27750 31 0 genus 9 4918 2593645 0 3 no rank 1 species 0 Chryseobacterium sp. StRB126 878220 2048 Chryseobacterium sp. IHB B 17019 1721091 1347 1 species 0 1523 Chryseobacterium sp. T16E-39 2015076 0 1 species Chryseobacterium piperi 558152 1335 0 1 species species 1 0 1685010 Chryseobacterium glaciei 1492 1 species 0 Chryseobacterium indologenes 253 3277 1324352 Chryseobacterium gallinarum 14929 0 species 1 Chryseobacterium camelliae 1265445 1768 1 species 0 2782228 1675 genus 1 0 536441 Chryseobacterium taklimakanense 1675 0 species 1 4925 Ornithobacterium 28250 1 0 113 2 genus 4812 28251 Ornithobacterium rhinotracheale species 1 0 2 family 0 1333713 1304 1304 267986 1 Owenweeksia 2 0 genus 2 253245 Owenweeksia hongkongensis 1302 0 species 1 1755828 825 family 1 0 genus 1 0 1755829 825 0 species 1 825 242600 Ichthyobacterium seriolicida Blattabacteriaceae 39782 1 2458 0 2 10 family 2456 Blattabacterium 1 34098 9 genus 0 19 196 164514 Blattabacterium punctulatus species 1 0 Blattabacterium cuenoti 1653831 331 1 species 0 1910 2647581 no rank 6 0 356 1186051 Blattabacterium sp. (Blaberus giganteus) species 1 0 0 1 species Blattabacterium sp. (Mastotermes darwiniensis) 39768 231 1316444 Blattabacterium sp. (Nauphoeta cinerea) 356 species 1 0 Blattabacterium sp. (Blattella germanica) 624186 404 1 species 0 218 367488 Blattabacterium sp. (Periplaneta americana) 0 species 1 0 species 1 367806 Blattabacterium sp. (Blatta orientalis) 345 0 no rank 2 225 313602 genus 1 0 1940138 76 76 Candidatus Walczuchella monophlebidarum 1415657 0 1 species genus 1 0 149 336809 species 1 0 336810 Candidatus Sulcia muelleri 149 5 Cryomorphaceae 246874 1 family 0 768503 1 Cytophagia 63787 116 0 class 60 order 59 166 0 768507 1 Cytophagales 63671 2762301 1337 0 family 2 2 genus 0 18 1337 Marivirga 869806 1 1006 Marivirga tractuosa 1319 0 species 1 110 0 family 16 1853232 1 Hymenobacteraceae 28914 15 0 genus 3 6393 1 323449 Pontibacter 400092 Pontibacter korlensis 3965 species 1 0 0 1 species Pontibacter akesuensis 388950 2413 1 89966 Hymenobacter 16066 genus 8 239 0 1 species 0 2297 Hymenobacter swuensis 1446467 1411621 Hymenobacter sedentarius 3258 0 species 1 2615202 10272 no rank 5 0 0 species 1 2322 1484118 Hymenobacter sp. PAMC 26628 0 species 1 1377 1385663 Hymenobacter sp. DG25A 1484116 Hymenobacter sp. PAMC 26554 2289 0 species 1 0 1 species 2260 Hymenobacter sp. APR13 1356852 2024 1385664 Hymenobacter sp. DG25B species 1 0 6345 Rufibacter 1 1379908 0 67 4 genus 512763 Rufibacter tibetensis 2361 species 1 0 0 2 no rank 2639626 3917 2288 1379909 Rufibacter sp. DG15C 0 species 1 0 1 species 1629 Rufibacter sp. DG31D 1379910 563798 1 Cyclobacteriaceae 6078 8 0 family 10 Belliella 1 232244 1244 0 11 2 genus 0 species 1 1233 232259 Belliella baltica 0 2 2 genus 1484 Echinicola 390846 1 1482 390884 Echinicola vietnamensis species 1 0 Algoriphagus 246875 1 1002 0 16 2 genus 1 species 0 986 Algoriphagus sp. M8-2 1727163 2340 68288 1 Cyclobacterium 28 0 genus 3 1222 320787 Cyclobacterium amurskyense 0 species 1 Cyclobacterium marinum 104 1090 0 1 species 1501348 635 0 3 family 1 0 genus 2 286 281119 1 Candidatus Amoebophilus species 1 0 285 281120 Candidatus Amoebophilus asiaticus 0 genus 1 349 273135 2641185 349 1 no rank 0 Cardinium endosymbiont of Encarsia pergandiella 249402 349 1 species 0 3475 1 1853234 Persicobacteraceae family 3 8 0 genus 2 3 0 3467 59740 1 Persicobacter 3464 2664020 no rank 1 0 3464 1085624 Persicobacter sp. JZB09 species 1 0 4 family 0 8 Flammeovirgaceae 1 200667 4148 genus 2 3 0 2333 1 59739 Flammeovirga 0 no rank 1 2637820 2330 species 1 0 1191459 Flammeovirga sp. MY04 2330 0 1 no rank 340671 1807 1 species 0 1807 Flammeovirgaceae bacterium 311 1257021 5 0 family 3 1 1937968 Bernardetiaceae 1009 15 0 genus 2 1937972 1 Bernardetia 1004 1 species 0 989 Bernardetia litoralis 999 1 89373 Cytophagaceae 17909 92 0 family 17 1267 105 1 Runella 6 0 genus 2 0 species 1 1261 106 Runella slithyformis 0 11 2 genus Cytophaga 978 1 1639 1628 Cytophaga hutchinsonii 985 1 species 0 genus 2 1 0 1983 319458 1 Leadbetterella 1982 Leadbetterella byssophila 316068 1 species 0 genus 2 2 0 120831 1 Dyadobacter 3131 Dyadobacter fermentans 94254 3129 1 species 0 genus 6 204 0 1 107 Spirosoma 7762 species 1 0 1318 1379870 Spirosoma radiotolerans 1461 1178516 Spirosoma montaniterrae species 1 0 Spirosoma aerolatum 1211326 1847 1 species 0 species 1 0 564064 Spirosoma rigui 1157 1775 Spirosoma sp. HA7 2057025 0 1 species 2035 Fibrella 861914 1 2 genus 0 3 no rank 1 0 2620963 2032 0 1 species 2032 Fibrella sp. ES10-3-2-2 1834519 11650 1090 22 phylum 0 class 22 85 0 1 191410 Chlorobia 11650 11565 Chlorobiales 191411 1 21 order 0 106 0 266 20 family Chlorobiaceae 191412 1 11459 5 0 genus 2 519 1 100715 Chloroherpeton 1 species 0 Chloroherpeton thalassium 100716 514 2371 Prosthecochloris 1 1101 5 genus 0 13 0 3 no rank 1910 2632826 435 1868325 Prosthecochloris sp. CIB 2401 species 1 0 684 281093 Prosthecochloris sp. GSB1 species 1 0 1 species 0 Prosthecochloris sp. HL-130-GSB 1974213 791 0 1 species Prosthecochloris aestuarii 1102 448 0 8 no rank 274493 4853 2251 1099 1 Pelodictyon 10 0 genus 3 1178 Pelodictyon luteolum 1100 0 1 species species 1 0 1063 34090 Pelodictyon phaeoclathratiforme 5 genus 0 9 Chlorobium 1 1091 2602 624 1092 Chlorobium limicola 0 species 1 0 1 species 793 Chlorobium phaeobacteroides 1096 1094 Chlorobium phaeovibrioides 525 species 1 0 species 1 0 651 337090 Chlorobium chlorochromatii Chlorobaculum 1 256319 3450 4 genus 0 29 Chlorobaculum tepidum 1097 1058 1 species 0 0 species 1 1064 274537 Chlorobaculum limnaeum species 1 0 1299 274539 Chlorobaculum parvum 6 phylum 0 1783 1134404 6 class 0 6 1783 Ignavibacteria 1 795747 Ignavibacteriales 1 795748 1777 5 order 0 14 0 family 2 800 1334117 800 1134403 1 Melioribacter 6 0 genus 2 1 species 0 794 Melioribacter roseus 1134405 963 1 795749 Ignavibacteriaceae 10 0 family 2 1 genus 0 953 795750 953 Ignavibacterium album 591197 0 1 species 0 1 phylum 456828 1310 1310 456826 0 genus 1 1 species 0 1310 Candidatus Cloacimonas acidaminovorans 456827 508458 6049 0 phylum 11 6049 649775 1 Synergistia class 11 2 0 order 10 60 0 6047 1 649776 Synergistales 5987 Synergistaceae 649777 1 9 family 0 1046 167 Acetomicrobium 1 49894 2 genus 0 1 species 1 0 97477 Acetomicrobium mobile 166 0 1 genus 336260 322 322 Thermovirga lienii 336261 0 1 species 81466 319 genus 1 0 319 81468 Aminobacterium colombiense species 1 0 374 1 81461 Thermanaerovibrio genus 2 1 0 0 species 1 81462 Thermanaerovibrio acidaminovorans 373 0 1 2 genus 3759 Cloacibacillus 1 508459 1197717 Cloacibacillus porcorum 3758 species 1 0 1930617 595 0 phylum 4 4 class 0 2 Calditrichae 1 1962850 595 593 Calditrichales 1962852 1 3 order 0 2 2 family 0 591 1962854 1 187144 Caldithrix 591 genus 2 3 0 588 187145 Caldithrix abyssi 0 species 1 200930 5289 phylum 10 0 Deferribacteres 68337 1 5289 0 8 10 class 5281 191393 1 Deferribacterales order 9 2 0 0 22 8 family 5279 Deferribacteraceae 1 191394 782 Denitrovibrio 117999 1 0 1 2 genus Denitrovibrio acetiphilus 118000 781 1 species 0 0 1 genus 545865 1792 0 1 species 1792 Calditerrivibrio nitroreducens 477976 2 genus 0 3 Flexistipes 2351 1 789 0 species 1 2352 Flexistipes sinusarabici 786 0 1 2 genus 1894 Deferribacter 53572 1 1 species 0 Deferribacter desulfuricans 197162 1893 0 phylum 9 1779 200940 class 9 1 0 1779 1 67799 Thermodesulfobacteria Thermodesulfobacteriales 1 188710 1778 8 order 0 1 7 family 0 2 1777 Thermodesulfobacteriaceae 1 188711 genus 2 1 0 1 444090 Caldimicrobium 429 species 1 0 1653476 Caldimicrobium thiodismutans 428 0 genus 2 833 1740 0 species 1 568 1295609 Thermodesulfobacterium geofontis 0 species 1 265 1741 Thermodesulfobacterium commune 2 genus 0 4 Thermodesulfatator 1 241192 513 species 1 0 509 171695 Thermodesulfatator indicus 20 phylum 0 57723 7330 17 class 0 19 6676 Acidobacteriia 1 204432 Acidobacteriales 204433 1 5363 12 order 0 85 5278 1 204434 Acidobacteriaceae family 11 35 0 Candidatus Koribacter 1 658061 718 2 genus 0 38 1 species 0 680 Candidatus Koribacter versatilis 658062 genus 3 6 0 940557 1 Granulicella 1912 940614 Granulicella mallensis 1089 species 1 0 0 species 1 817 940615 Granulicella tundricola 392733 1 Terriglobus 1800 genus 3 3 0 466 870903 Terriglobus saanensis 0 species 1 Terriglobus roseus 392734 1331 0 1 species 813 1 33973 Acidobacterium 4 0 genus 2 0 species 1 809 33075 Acidobacterium capsulatum 1 332160 Solibacterales 1294 order 4 19 0 0 5 3 family 1275 Solibacteraceae 1 332161 1270 Candidatus Solibacter 332162 1 2 genus 0 13 Candidatus Solibacter usitatus 332163 1257 0 1 species Blastocatellia 1562566 1 654 3 class 0 2 genus 2 3 0 1 458032 Chloracidobacterium 652 Chloracidobacterium thermophilum 458033 649 1 species 0 341 2138240 phylum 3 0 Coprothermobacteria 1 2138243 341 3 class 0 2 2 order 0 339 2138246 2 0 family 2 339 1 2138247 Coprothermobacteraceae 0 genus 1 337 68335 337 Coprothermobacter proteolyticus 35786 0 1 species 2 no rank 0 2323 644 644 1783234 0 clade 2 phylum 1 0 95818 152 152 1895827 no rank 1 0 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 152 species 1 0 0 clade 1 492 95901 492 2497643 class 1 0 492 2497644 1 order 0 0 family 1 2497645 492 492 1551504 1 genus 0 Candidatus Babela massiliensis 673862 492 1 species 0 488 2498710 0 1 clade 0 phylum 1 488 67814 693071 488 class 1 0 1 order 0 693072 488 488 693073 family 1 0 488 693074 genus 1 0 488 Caldisericum exile 693075 0 1 species 94 clade 0 1783257 39412 4 0 phylum 28 9600 74201 1 Verrucomicrobia class 6 4 0 1955630 1 Methylacidiphilae 320 0 5 5 order Methylacidiphilales 1 717963 316 4 family 0 1 Methylacidiphilaceae 1 717964 311 genus 3 19 0 511745 1 Methylacidiphilum 310 591154 Methylacidiphilum fumariolicum 181 0 species 1 511746 Methylacidiphilum infernorum 110 species 1 0 Verrucomicrobiae 203494 1 2725 0 7 6 class 10 0 order 5 2718 48461 1 Verrucomicrobiales Akkermansiaceae 1647988 1 2708 4 family 0 7 0 16 3 genus Akkermansia 1 239934 2701 Akkermansia muciniphila 239935 1637 1 species 0 species 1 0 1679444 Akkermansia glycaniphila 1048 class 12 32 0 4515 414999 1 Opitutae 415000 1 Opitutales 4057 order 7 62 0 0 24 6 family 3995 Opitutaceae 134623 1 no rank 1 0 278955 1408 1408 Opitutaceae bacterium TAV5 794903 0 1 species 897 Opitutus 178440 1 0 4 2 genus species 1 0 893 107709 Opitutus terrae 0 7 2 genus Lacunisphaera 1 1961799 1666 Lacunisphaera limnophila 1838286 1659 1 species 0 426 415001 1 Puniceicoccales order 4 2 0 3 0 family 3 415002 1 Puniceicoccaceae 424 9 0 genus 2 421 442430 1 Coraliomargarita 1 species 0 412 Coraliomargarita akajimensis 395922 417295 1896 0 2 no rank Verrucomicrobia bacterium IMCC26134 1637999 738 1 species 0 0 1 species 1158 Verrucomicrobia bacterium 2026799 class 1 0 134549 140 0 1 genus 140 134550 no rank 1 0 140 2648876 140 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 0 species 1 740 134625 5 phylum 0 1 1921781 Kiritimatiellae 740 class 5 3 0 order 4 3 0 1 1921782 Kiritimatiellales 737 734 Kiritimatiellaceae 1 1921783 0 1 3 family 1921784 1 Kiritimatiella 733 9 0 genus 2 0 species 1 724 1307763 Kiritimatiella glycovorans 256845 16289 3 phylum 0 1 1313211 Lentisphaeria 16289 class 3 4 0 1 278082 Victivallales 16285 392 0 order 2 no rank 1 0 15893 1674876 1 species 0 15893 Victivallales bacterium CCUG 44730 2094242 204428 2729 phylum 23 0 Chlamydiia 204429 1 2729 23 class 0 3 Chlamydiales 1 51291 1820 14 order 0 3 1817 Chlamydiaceae 1 809 0 1 13 family 1113537 1816 12 no rank 0 1816 810 1 Chlamydia genus 12 32 0 89 Chlamydia psittaci 83554 1 species 0 66 Chlamydia abortus 83555 0 1 species species 1 0 83556 Chlamydia felis 354 0 species 1 212 83558 Chlamydia pneumoniae 0 1 species 99 Chlamydia suis 83559 Chlamydia avium 1457141 121 1 species 0 0 species 1 123 85991 Chlamydia pecorum 1 species 0 295 Chlamydia trachomatis 813 0 1 species Chlamydia gallinacea 1457153 143 species 1 0 83557 Chlamydia caviae 76 Chlamydia muridarum 83560 206 0 1 species order 8 1 0 1963360 1 Parachlamydiales 906 122 Waddliaceae 92714 1 0 1 2 family 121 71666 genus 1 0 1 species 0 Waddlia chondrophila 71667 121 family 2 2 0 1 92712 Simkaniaceae 159 0 1 genus 157 34093 0 1 species 157 Simkania negevensis 83561 92713 624 family 3 0 2 genus 0 5 Parachlamydia 1 83551 306 species 1 0 301 83552 Parachlamydia acanthamoebae 318 282132 1 genus 0 species 1 0 389348 Candidatus Protochlamydia naegleriophila 318 10054 Planctomycetes 203682 1 35 phylum 0 4 6 0 class 7 666505 1 Phycisphaerae 1363 4 order 0 30 638 Phycisphaerales 1 666506 3 family 0 8 608 Phycisphaeraceae 1 666507 2 0 genus 2 666508 1 Phycisphaera 600 0 species 1 547188 Phycisphaera mikurensis 598 719 2483366 2 order 0 2483367 719 family 2 0 719 2483368 0 genus 2 0 1 species 399 Phycisphaerae bacterium L21-RPul-D3 1940790 320 Phycisphaerae bacterium ST-PulAB-D4 1941349 1 species 0 802 2517206 0 3 class 3 order 0 5 Candidatus Brocadiales 1127829 1 802 Candidatus Brocadiaceae 1 1127830 797 2 family 0 5 380738 792 0 genus 1 Candidatus Kuenenia stuttgartiensis 174633 792 0 1 species class 24 59 0 7885 1 203683 Planctomycetia 1 112 Planctomycetales 4514 order 10 114 0 4400 Planctomycetaceae 126 1 9 family 0 30 1649490 376 genus 1 0 1 species 0 Rubinisphaera brasiliensis 119 376 542 Planctopirus 1649480 1 2 genus 0 14 120 Planctopirus limnophila 528 0 species 1 1 1936111 Fuerstia 1668 genus 2 2 0 1891926 Fuerstia marisgermanicae 1666 species 1 0 genus 3 19 0 1784 1 118 Planctomyces 2648843 1765 0 no rank 2 1632864 Planctomyces sp. SH-PL14 744 0 species 1 0 1 species Planctomyces sp. SH-PL62 1636152 1021 0 order 4 2691354 1225 0 3 family 2691357 650 0 4 2 genus Pirellula 1 123 392 species 1 0 125 Pirellula staleyi 388 258 265488 0 genus 1 species 1 0 258 265606 Rhodopirellula baltica 0 family 1 575 2691358 genus 1 0 575 1676125 1331910 Thermogutta terrifontis 575 0 species 1 2691355 403 order 2 0 0 2 family 403 1914233 0 7 2 genus 403 Gemmata 1 113 396 2622970 no rank 1 0 396 1630693 Gemmata sp. SH-PL17 0 species 1 0 7 order 1684 2691356 1 1763524 Isosphaeraceae 1684 18 0 family 7 622 1763521 1 Paludisphaera genus 2 2 0 0 1 species Paludisphaera borealis 1387353 620 genus 2 2 0 535 1 466152 Singulisphaera species 1 0 466153 Singulisphaera acidiphila 533 509 Isosphaera 127 1 0 12 2 genus 0 1 species Isosphaera pallida 128 497 200918 13721 0 phylum 43 13721 188708 1 Thermotogae 6 0 class 43 833 Kosmotogales 1 1643946 7 order 0 1 Kosmotogaceae 1 1643948 832 0 2 6 family 599 Kosmotoga 1 651456 0 2 3 genus 0 1 species Kosmotoga olearia 651457 355 Kosmotoga pacifica 1330330 242 1 species 0 0 4 2 genus Mesotoga 1 1184396 231 227 Mesotoga prima 1184387 1 species 0 28 order 0 11 8593 Thermotogales 1 2419 4231 Fervidobacteriaceae 1 1643950 10 family 0 6 Thermosipho 1 2420 2590 0 45 5 genus 694 46541 Thermosipho melanesiensis species 1 0 Thermosipho africanus 2421 783 1 species 0 2676525 1068 2 no rank 0 1 species 0 538 Thermosipho sp. 1070 1437364 530 Thermosipho sp. 1063 1462747 1 species 0 4 0 genus 4 1 2422 Fervidobacterium 1635 0 species 1 93466 Fervidobacterium pennivorans 648 481 Fervidobacterium nodosum 2424 1 species 0 0 1 species Fervidobacterium islandicum 2423 502 0 5 17 family 4351 Thermotogaceae 1 188709 11 genus 0 29 Thermotoga 2335 1 3223 230 Thermotoga caldifontis 1508419 0 1 species 0 no rank 4 2631113 1294 1 species 0 Thermotoga sp. Cell2 1157947 295 126740 Thermotoga sp. RQ2 245 0 species 1 358 1157948 Thermotoga sp. 2812B 0 species 1 1 species 0 396 Thermotoga sp. RQ7 126738 Thermotoga petrophila 93929 415 0 1 species species 1 0 303 1508420 Thermotoga profunda 262 Thermotoga maritima 2336 1 species 0 Thermotoga neapolitana 2337 394 0 1 species 0 1 species Thermotoga naphthophila 93930 296 1123 Pseudothermotoga 1 1643951 0 9 5 genus 177758 Pseudothermotoga lettingae 280 species 1 0 0 1 species Pseudothermotoga thermarum 119394 291 species 1 0 57487 Pseudothermotoga hypogea 183 38322 Pseudothermotoga elfii 360 species 1 0 7 order 0 36 Petrotogales 1643947 1 4289 4253 1643949 family 6 0 0 1 genus 1511648 1041 1041 Defluviitoga tunisiensis 1006576 1 species 0 0 16 3 genus Marinitoga 1 160798 2558 0 1 no rank 2640159 1318 1 species 0 Marinitoga sp. 1137 1545835 1318 1224 Marinitoga piezophila 149715 1 species 0 28236 1 Petrotoga 654 1 0 genus 2 1 species 0 Petrotoga mobilis 69499 653 phylum 13 0 4059 40117 17 0 class 13 4059 1 203693 Nitrospira 189778 1 Nitrospirales 4042 order 12 6 0 family 11 9 0 4036 189779 1 Nitrospiraceae 716 Leptospirillum 1 179 4 genus 0 11 261385 275 0 1 species group 0 species 1 275 1660083 Leptospirillum sp. Group II 'CF-1' 0 species group 1 261386 286 178606 Leptospirillum ferriphilum 286 species 1 0 0 1 species group 144 655606 0 species 1 144 180 Leptospirillum ferrooxidans genus 5 8 0 2585 1234 1 Nitrospira species 1 0 330214 Nitrospira defluvii 501 1 species 0 Candidatus Nitrospira inopinata 1715989 512 0 1 species 790 Nitrospira moscoviensis 42253 0 species 1 774 1325564 Nitrospira japonica 28261 726 genus 1 0 species 1 0 726 28262 Thermodesulfovibrio yellowstonii 5 0 phylum 8 74152 1 Elusimicrobia 1589 1 no rank 0 375 99260 uncultured Termite group 1 bacterium 167965 375 1 species 0 0 3 class 511 641853 1 0 order 3 1 641854 Elusimicrobiales 511 5 0 family 2 510 641876 1 Elusimicrobiaceae 0 1 genus 423604 505 1 species 0 505 Elusimicrobium minutum 423605 698 447830 3 class 0 3 order 0 698 1783344 1783343 1 Endomicrobiaceae 698 family 3 2 0 696 1408194 2 genus 0 381 Candidatus Endomicrobium trichonymphae 1408204 1 species 0 species 1 0 315 1408281 Endomicrobium proavitum 1381185 Proteobacteria 1224 1 2018 phylum 0 466 4479 1553900 1 Oligoflexia 25 0 class 11 3326 213481 1 Bdellovibrionales 24 0 order 5 Bdellovibrionaceae 213483 1 3302 4 family 0 10 3292 958 1 Bdellovibrio 12 0 genus 3 1 species 0 678 Bdellovibrio exovorus 453816 2602 959 Bdellovibrio bacteriovorus 0 species 1 1128 2024979 1 Bacteriovoracales 3 0 order 5 667 Halobacteriovoraceae 1652132 1 2 family 0 3 664 1652133 0 1 genus 97084 Halobacteriovorax marinus 664 species 1 0 458 263369 family 2 0 1 146784 Bacteriovorax 458 9 0 genus 2 449 Bacteriovorax stolpii 960 1 species 0 0 410 351 class Betaproteobacteria 1 28216 229370 206389 1 Rhodocyclales 12288 263 0 order 22 3089 Rhodocyclaceae 75787 1 6 family 0 48 1 no rank 0 588 75788 species 1 0 1898103 Rhodocyclaceae bacterium 588 genus 2 33 0 1091 551759 1 Aromatoleum 0 species 1 1058 551760 Aromatoleum aromaticum genus 2 98 0 1362 146937 1 Azospira Azospira oryzae 146939 1264 1 species 0 family 3 4 0 746 2008795 1 Azonexaceae 742 Dechloromonas 1 73029 0 20 2 genus 0 1 species 722 Dechloromonas aromatica 259537 8190 1 2008794 Zoogloeaceae family 12 146 0 12960 1 Azoarcus 3345 genus 5 136 0 0 species 1 732 418699 Azoarcus olearius 2629479 1901 0 no rank 2 198107 Azoarcus sp. CIB 950 0 species 1 748247 Azoarcus sp. KH32C 951 species 1 0 0 1 species 576 Azoarcus sp. SY39 2067960 6 genus 0 145 Thauera 33057 1 4699 0 no rank 2 2024 2609274 1029 2005884 Thauera sp. K11 species 1 0 0 species 1 85643 Thauera sp. MZ1T 995 1134435 Thauera humireducens 950 species 1 0 1 species 0 Thauera chlorobenzoica 96773 735 species 1 0 845 59405 Thauera aromatica 1 80840 Burkholderiales 177584 1532 0 order 235 no rank 17 0 224471 9491 0 12 2 genus Thiomonas 1 32012 1316 926 Thiomonas intermedia 1304 0 species 1 1453 28067 1 Rubrivivax 47 0 genus 2 28068 Rubrivivax gelatinosus 1406 species 1 0 1300 Roseateles 93681 1 0 35 2 genus 0 1 species Roseateles depolymerans 76731 1265 65047 1 Mitsuaria 920 genus 2 30 0 1 no rank 0 2648776 890 890 1658665 Mitsuaria sp. 7 0 species 1 Leptothrix 88 1 904 2 genus 0 45 859 34029 Leptothrix cholodnii 0 species 1 788 Methylibium 316612 1 0 27 2 genus 761 105560 Methylibium petroleiphilum species 1 0 1181 1 212743 Rhizobacter 43 0 genus 2 1138 946333 Rhizobacter gummiphilus species 1 0 0 1 species [Polyangium] brachysporum 413882 859 770 318147 1 Paucibacter genus 2 15 0 no rank 1 0 2642959 755 species 1 0 1768242 Paucibacter sp. KCTC 42545 755 84 family 0 441 Burkholderiaceae 1 119060 71196 1904 0 genus 41 34235 1 32008 Burkholderia 111527 5120 7 species group 0 1 species 0 Burkholderia thailandensis 57975 1051 0 1 species Burkholderia sp. MSMB617WGS 1637831 514 460 Burkholderia mallei 13373 0 1 species 513 1637837 Burkholderia sp. MSMB0266 0 species 1 1253 28450 Burkholderia pseudomallei 0 species 1 1 species 0 519 Burkholderia sp. MSMB0852 1637841 810 Burkholderia oklahomensis 342113 0 1 species 1 species 0 1637 Burkholderia gladioli 28095 41899 Burkholderia plantarii 946 species 1 0 0 11 no rank 7019 2613784 1 species 0 Burkholderia sp. 2002721687 1468409 444 446 Burkholderia sp. PAMC 26561 1795043 1 species 0 1 species 0 Burkholderia sp. PAMC 28687 1795874 419 0 species 1 963 640510 Burkholderia sp. CCGE1001 1 species 0 Burkholderia sp. Bp5365 1740162 379 Burkholderia sp. CCGE1003 640512 904 1 species 0 876 Burkholderia sp. HB1 1678678 1 species 0 740 1097668 Burkholderia sp. YI23 species 1 0 1 species 0 Burkholderia sp. RPE67 758796 801 species 1 0 1740163 Burkholderia sp. Bp7605 467 0 species 1 416344 Burkholderia sp. KJ006 580 1386 Burkholderia glumae 337 0 1 species 87882 16223 0 species group 19 species 1 0 488729 Burkholderia metallica 281 0 species 1 2480 95486 Burkholderia cenocepacia species 1 0 152500 Burkholderia dolosa 449 488447 Burkholderia contaminans 400 0 species 1 1207504 Burkholderia pseudomultivorans 519 0 species 1 species 1 0 488446 Burkholderia latens 467 375 1503055 Burkholderia territorii 0 species 1 265293 [Pseudomonas] mesoacidophila 481 0 species 1 0 1 species Burkholderia pyrrocinia 60550 356 1482 Burkholderia multivorans 87883 0 1 species 625 482957 Burkholderia lata 0 species 1 0 1 species 2714 Burkholderia cepacia 292 species 1 0 870 95485 Burkholderia stabilis 0 1 species Burkholderia diffusa 488732 434 492 1503054 Burkholderia stagnalis 0 species 1 1 species 0 1735 Burkholderia ubonensis 101571 488731 Burkholderia seminalis 536 species 1 0 650 Burkholderia ambifaria 152480 1 species 0 60552 Burkholderia vietnamiensis 877 species 1 0 292 0 genus 10 1 93217 Pandoraea 6927 0 1 species Pandoraea faecigallinarum 656179 894 1 species 0 Pandoraea sputorum 93222 562 0 1 species 728 Pandoraea vervacti 656178 93218 Pandoraea apista 639 species 1 0 93220 Pandoraea pnomenusa 853 0 species 1 1 species 0 Pandoraea oxalativorans 573737 778 0 1 species Pandoraea pulmonicola 93221 759 0 1 species 417 Pandoraea thiooxydans 445709 species 1 0 1005 93219 Pandoraea norimbergensis 3 0 genus 4 1597 1 44013 Polynucleobacter species 1 0 576611 Polynucleobacter asymbioticus 831 Polynucleobacter duraquae 1835254 305 1 species 0 0 1 species 458 Polynucleobacter necessarius 576610 1148 1827195 genus 1 0 Burkholderia sp. RPE64 758793 1148 1 species 0 Ralstonia 48736 1 7453 0 174 5 genus 0 species 1 932 105219 Ralstonia mannitolilytica Ralstonia pickettii 329 1852 1 species 0 3380 305 Ralstonia solanacearum species 1 0 0 species 1 190721 Ralstonia insidiosa 1115 9764 1 1822464 Paraburkholderia genus 12 275 0 872 311230 Paraburkholderia terrae species 1 0 712 134537 Paraburkholderia fungorum 0 species 1 0 1 species Paraburkholderia phytofirmans 261302 939 species 1 0 1383 75105 Paraburkholderia caribensis 0 1 species Paraburkholderia aromaticivorans 2026199 1033 1 no rank 0 2615204 624 0 species 1 1926494 Paraburkholderia sp. SOS3 624 780 252970 Paraburkholderia phenoliruptrix species 1 0 905 148447 Paraburkholderia phymatum species 1 0 756 Paraburkholderia xenovorans 36873 1 species 0 852 Paraburkholderia hospita 169430 0 1 species 1 species 0 Paraburkholderia sprentiae 948107 633 Cupriavidus 1 106589 9253 0 489 9 genus 970 Cupriavidus metallidurans 119219 0 1 species 772 82541 Cupriavidus gilardii 0 species 1 1 species 0 1444 Cupriavidus necator 106590 367825 Cupriavidus sp. USMAA1020 1045 0 species 1 1 species 0 1221 Cupriavidus basilensis 68895 0 2 no rank 2640874 2415 0 species 1 1389192 Cupriavidus sp. USMAHM13 1175 1240 Cupriavidus sp. USMAA2-4 876364 1 species 0 species 1 0 248026 Cupriavidus pinatubonensis 897 0 1 genus 378 2571159 0 species 1 412963 Paraburkholderia rhizoxinica 378 3833 80841 no rank 2 0 0 species 1 1834205 Burkholderiales bacterium YL45 2448 1469502 Burkholderiales bacterium GJ-E10 1385 0 species 1 33002 Alcaligenaceae 506 1 43 family 0 207 13888 517 1 Bordetella genus 17 526 0 823 463014 Bordetella flabilis 0 species 1 0 no rank 1 701 2630031 1 species 0 Bordetella sp. H567 1697043 701 0 species 1 463025 Bordetella bronchialis 915 0 1 species 991 Bordetella pseudohinzii 1331258 1 species 0 Bordetella hinzii 103855 1374 species 1 0 521 521 Bordetella avium 879 Bordetella genomosp. 13 463040 0 1 species 1 species 0 Bordetella petrii 94624 709 680 Bordetella genomosp. 9 1416803 1 species 0 species 1 0 371 35814 Bordetella holmesii 879 Bordetella genomosp. 8 1416806 1 species 0 0 1 species 1399 Bordetella bronchiseptica 518 865 519 Bordetella parapertussis species 1 0 species 1 0 520 Bordetella pertussis 658 0 species 1 123899 Bordetella trematum 927 670 463024 Bordetella genomosp. 6 species 1 0 0 1 genus 1100891 416 0 1 species Paenalcaligenes hominis 643674 416 genus 2 5 0 1 305976 Pusillimonas 477 2640016 472 no rank 1 0 1007105 Pusillimonas sp. T7-7 472 species 1 0 3 genus 0 1 Taylorella 29574 1 1209 624 84590 Taylorella asinigenitalis 0 species 1 29575 Taylorella equigenitalis 584 species 1 0 769 1472344 1 Basilea 3 0 genus 2 0 species 1 766 1472345 Basilea psittacipulmonis 12 0 genus 2 805 1 1921582 Orrella 1 species 0 Orrella dioscoreae 1851544 793 968 1 359336 Castellaniella genus 2 21 0 0 species 1 947 75697 Castellaniella defragrans Advenella 290425 1 1231 3 genus 0 7 0 1 species 531 Advenella kashmirensis 310575 693 302406 Advenella mimigardefordensis species 1 0 909 Oligella 1 90243 0 2 2 genus species 1 0 90245 Oligella urethralis 907 0 317 6 genus Achromobacter 222 1 10271 1 species 0 Achromobacter denitrificans 32002 2174 species 1 0 4093 85698 Achromobacter xylosoxidans 1 species 0 1739 Achromobacter spanius 217203 0 no rank 1 1015 2626865 1015 1758194 Achromobacter sp. AONIH1 0 species 1 species 1 0 217204 Achromobacter insolitus 933 1852 507 1 Alcaligenes genus 2 7 0 0 1 species Alcaligenes faecalis 511 1845 21176 Oxalobacteraceae 1 75682 0 209 29 family 3369 Collimonas 202907 1 4 genus 0 67 Collimonas fungivorans 158899 1030 1 species 0 species 1 0 993 279113 Collimonas pratensis 0 1 species Collimonas arenae 279058 1279 1 29580 Janthinobacterium 4665 genus 7 68 0 1 species 0 877 Janthinobacterium svalbardensis 368607 2610881 3068 0 no rank 4 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1180 1 species 0 0 species 1 1938606 Janthinobacterium sp. LM6 752 1236179 Janthinobacterium sp. B9-8 429 0 species 1 0 1 species Janthinobacterium sp. Marseille 375286 707 1 species 0 Janthinobacterium agaricidamnosum 55508 652 Oxalobacter 1 846 580 0 4 2 genus Oxalobacter formigenes 847 576 1 species 0 113 0 genus 6 149698 1 Massilia 5384 Massilia sp. B2 2045208 842 1 species 0 0 no rank 2 2609279 2237 0 species 1 1707785 Massilia sp. WG5 1258 1 species 0 979 Massilia sp. NR 4-1 1678028 0 1 species 1170 Massilia putida 1141883 0 1 species 1022 Massilia sp. ZMN-3 2072590 5986 Herbaspirillum 1 963 0 121 6 genus 80842 Herbaspirillum rubrisubalbicans 1056 0 species 1 Herbaspirillum frisingense 92645 1205 0 1 species 2624150 914 no rank 1 0 914 Herbaspirillum sp. meg3 2025949 1 species 0 Herbaspirillum seropedicae 964 1474 1 species 0 341045 Herbaspirillum hiltneri 1216 0 species 1 3 genus 0 8 983 Herminiimonas 303379 1 Herminiimonas arsenicoxydans 204773 407 0 1 species 1 species 0 568 Herminiimonas arsenitoxidans 1809410 Comamonadaceae 1 80864 37354 0 409 59 family 3 genus 0 14 Polaromonas 52972 1 1344 713 Polaromonas naphthalenivorans 216465 0 1 species 2638319 617 1 no rank 0 0 species 1 617 296591 Polaromonas sp. JS666 genus 2 6 0 1 174951 Ramlibacter 1463 Ramlibacter tataouinensis 94132 1457 0 1 species 0 42 4 genus Comamonas 1 283 3419 0 1 species 750 Comamonas serinivorans 1082851 225992 Comamonas kerstersii 964 0 species 1 Comamonas testosteroni 285 1663 1 species 0 0 35 4 genus Hydrogenophaga 47420 1 2235 0 2 no rank 1634 2610897 975 795665 Hydrogenophaga sp. PBC 0 species 1 659 1842537 Hydrogenophaga sp. RAC07 species 1 0 0 species 1 566 1763535 Hydrogenophaga crassostreae Acidovorax 1 12916 6611 9 genus 0 269 0 species 1 721785 Acidovorax ebreus 702 1 species 0 806 Acidovorax citrulli 80869 2684926 3541 0 no rank 4 species 1 0 1858609 Acidovorax sp. T1 565 892 1842533 Acidovorax sp. RAC01 0 species 1 0 species 1 232721 Acidovorax sp. JS42 921 0 species 1 358220 Acidovorax sp. KKS102 1163 0 1 species 507 Acidovorax sp. NA3 553814 80867 Acidovorax avenae 786 0 species 1 genus 2 9 0 1 201096 Alicycliphilus 1131 1122 179636 Alicycliphilus denitrificans species 1 0 1055 Limnohabitans 1 665874 3 genus 0 7 1048 2626134 0 2 no rank 710 1678129 Limnohabitans sp. 103DPR2 species 1 0 338 Limnohabitans sp. 63ED37-2 1678128 0 1 species Delftia 80865 1 4780 5 genus 0 130 species 1 0 80866 Delftia acidovorans 1314 2 no rank 0 2114 2613839 1137 Delftia sp. HK171 1920191 0 1 species 742013 Delftia sp. Cs1-4 977 0 species 1 0 species 1 180282 Delftia tsuruhatensis 1222 2 0 genus 2 474 1 1436289 Candidatus Symbiobacter 472 1436290 Candidatus Symbiobacter mobilis species 1 0 Simplicispira 352450 1 667 0 1 2 genus Simplicispira sp. SC1-8 2109915 666 1 species 0 Melaminivora 1649468 1 707 0 44 2 genus 0 no rank 1 2641902 663 Melaminivora sp. SC2-9 2109913 663 1 species 0 991 2490452 0 genus 2 species 1 0 437 1458425 Comamonadaceae bacterium A1 0 species 1 554 1458426 Comamonadaceae bacterium B1 Verminephrobacter 1 364316 673 0 6 2 genus 667 364317 Verminephrobacter eiseniae 0 species 1 786 1 238749 Diaphorobacter genus 2 7 0 Diaphorobacter polyhydroxybutyrativorans 1546149 779 1 species 0 Rhodoferax 28065 1 3001 0 23 5 genus 946 1842727 Rhodoferax koreense species 1 0 0 species 1 415 1484693 Rhodoferax saidenbachensis Rhodoferax antarcticus 81479 842 0 1 species 192843 Rhodoferax ferrireducens 775 species 1 0 0 1 genus 2678886 593 Melaminivora sp. SC2-7 2116657 593 1 species 0 10 0 genus 3 1320 1 219181 Ottowia 0 1 no rank 726 2645081 1658672 Ottowia sp. oral taxon 894 726 species 1 0 0 species 1 584 2109914 Ottowia sp. KADR8-3 5695 1 34072 Variovorax 131 0 genus 5 2709 34073 Variovorax paradoxus 0 species 1 0 1 species Variovorax boronicumulans 436515 1164 663243 1691 no rank 2 0 666 Variovorax sp. PAMC 28711 1795631 1 species 0 1025 Variovorax sp. PMC12 2126319 0 1 species 119066 2779 11 no rank 0 247 189384 0 1 genus species 1 0 247 189385 Candidatus Tremblaya princeps 1 genus 0 199 1381133 0 species 1 199 669502 Candidatus Profftella armatura 2 genus 0 8 Candidatus Accumulibacter 1 327159 592 species 1 0 584 327160 Candidatus Accumulibacter phosphatis 1301080 93 1 genus 0 1160784 Candidatus Nasuia deltocephalinicola 93 species 1 0 Kinetoplastibacterium 1 33055 1648 6 genus 0 4 1 species 0 Candidatus Kinetoplastibacterium crithidii 33056 447 1 species 0 244 Candidatus Kinetoplastibacterium galatii 994695 0 1 species Candidatus Kinetoplastibacterium desouzaii 994692 242 233181 Kinetoplastibacterium blastocrithidii 424 species 1 0 287 994696 Candidatus Kinetoplastibacterium oncopeltii species 1 0 33809 1438 no rank 2 0 0 1 species 488 beta proteobacterium CB 543913 1 species 0 Betaproteobacteria bacterium GR16-43 1904640 950 0 126 43 order Nitrosomonadales 32003 1 14299 13 family 0 11 Methylophilaceae 32011 1 4610 359407 1 Methylotenera 1436 2 0 genus 3 0 species 1 439 359408 Methylotenera mobilis 0 species 1 995 1055487 Methylotenera versatilis 81682 1 Methylovorus 1118 8 0 genus 3 498 Methylovorus glucosotrophus 266009 1 species 0 612 2634027 no rank 1 0 612 Methylovorus sp. MP688 887061 0 1 species 1 16 Methylophilus 599 1 0 genus 2 1 no rank 0 598 2630143 Methylophilus sp. TWE2 1662285 598 1 species 0 9 0 genus 2 1 404 Methylobacillus 387 0 species 1 405 Methylobacillus flagellatus 378 genus 2 0 1059 1679002 1581680 Candidatus Methylopumilus turicensis 528 0 species 1 531 1581557 Candidatus Methylopumilus planktonicus species 1 0 0 family 4 2772226 1474 558 1 1778653 Sulfuriferula genus 2 7 0 551 2637784 0 1 no rank Sulfuriferula sp. AH1 1985873 551 1 species 0 14 0 genus 2 1 935200 Sulfuricella 916 0 1 species 902 Sulfuricella denitrificans 649841 90627 1 Gallionellaceae 1121 family 5 26 0 genus 2 13 0 606 1 314343 Sideroxydans 1 species 0 Sideroxydans lithotrophicus 63745 593 489 Gallionella 96 1 2 genus 0 2 1 species 0 487 Gallionella capsiferriformans 370405 1741 Sterolibacteriaceae 2008793 1 0 39 5 family Methyloversatilis 378210 1 609 0 10 2 genus 2639971 599 no rank 1 0 1 species 0 599 Methyloversatilis sp. RAC08 1842540 1093 Sulfuritalea 1 1054211 0 24 2 genus 1069 Sulfuritalea hydrogenivorans 748811 1 species 0 10 0 family 3 1 2008790 Thiobacillaceae 761 751 Thiobacillus 1 919 2 genus 0 40 0 species 1 36861 Thiobacillus denitrificans 711 4466 206379 1 Nitrosomonadaceae family 12 72 0 0 148 7 genus Nitrosomonas 1 914 2731 species 1 0 915 Nitrosomonas europaea 435 487 916 Nitrosomonas eutropha 0 species 1 44577 Nitrosomonas ureae 515 species 1 0 species 1 0 382 44574 Nitrosomonas communis 0 no rank 2 2609265 764 0 1 species 475 Nitrosomonas sp. AL212 153948 0 species 1 289 261292 Nitrosomonas sp. Is79A3 genus 4 7 0 1 35798 Nitrosospira 1663 Nitrosospira briensis 35799 457 0 1 species 1 species 0 Nitrosospira multiformis 1231 569 0 1 species 630 Nitrosospira lacus 1288494 206351 1 Neisseriales 20572 147 0 order 37 8387 1499392 1 Chromobacteriaceae family 13 122 0 1072 Jeongeupia 1 885864 0 18 2 genus 1054 2619593 no rank 1 0 1054 Jeongeupia sp. USM3 1906741 1 species 0 738 Aquaspirillum 187 1 0 15 2 genus 723 2620219 0 no rank 1 0 species 1 723 1938604 Aquaspirillum sp. LM1 Laribacter 1 168470 1052 0 27 2 genus Laribacter hongkongensis 168471 1025 1 species 0 90153 4097 0 4 no rank 4 genus 0 189 4097 Chromobacterium 1 535 1156 536 Chromobacterium violaceum species 1 0 1 species 0 Chromobacterium vaccinii 1108595 1773 2641838 979 1 no rank 0 2059672 Chromobacterium sp. ATCC 53434 979 0 species 1 1306 Pseudogulbenkiania 1 568394 0 22 2 genus 0 1 no rank 2642558 1284 0 1 species 1284 Pseudogulbenkiania sp. NH8B 748280 1 481 Neisseriaceae 12038 family 23 100 0 Neisseria 482 1 7688 0 196 12 genus Neisseria sp. 10023 1853278 498 1 species 0 1374 2623750 no rank 2 0 1853276 Neisseria sp. 10022 770 species 1 0 0 species 1 655307 Neisseria sp. KEM232 604 Neisseria mucosa 488 530 1 species 0 species 1 0 1509 487 Neisseria meningitidis 0 species 1 326523 Neisseria zoodegmatis 473 0 1 species 563 Neisseria elongata 495 species 1 0 486 Neisseria lactamica 795 597 Neisseria weaveri 28091 1 species 0 515 Neisseria gonorrhoeae 485 0 1 species 638 490 Neisseria sicca species 1 0 Eikenella 1 538 737 0 1 2 genus 0 species 1 539 Eikenella corrodens 736 513 421605 0 1 no rank 513 Neisseriaceae bacterium DSM 100970 2052837 1 species 0 1 1193515 Snodgrassella 822 49 0 genus 2 1 species 0 Snodgrassella alvi 1196083 773 1 0 genus 2 71 1 Simonsiella 594 0 1 species Simonsiella muelleri 72 593 59 1 Vitreoscilla 1584 14 0 genus 3 725 63 Vitreoscilla filiformis species 1 0 1 no rank 0 845 2627922 845 96942 Vitreoscilla sp. C1 0 species 1 68525 167753 0 subphylum 197 236 0 class 125 116634 28221 1 Deltaproteobacteria 1 213462 Syntrophobacterales 2265 17 0 order 10 1409 Syntrophaceae 1 213468 6 family 0 1 genus 2 1 0 1 60892 Desulfobacca 387 386 Desulfobacca acetoxidans 60893 1 species 0 4 0 genus 2 379 1 43773 Syntrophus 316277 Syntrophus aciditrophicus 375 species 1 0 642 2357 1 genus 0 Desulfomonile tiedjei 2358 642 0 1 species 839 213465 1 Syntrophobacteraceae family 3 21 0 818 Syntrophobacter 1 29526 2 genus 0 4 Syntrophobacter fumaroxidans 119484 814 0 1 species Desulfovibrionales 213115 1 61957 25 order 0 173 129 0 family 17 59362 1 194924 Desulfovibrionaceae 1 genus 0 507 41707 29546 Lawsonia intracellularis 507 0 species 1 2582840 763 1 genus 0 species 1 0 873 Desulfovibrio africanus 763 genus 4 10 0 2035811 1 Pseudodesulfovibrio 4600 1716143 Pseudodesulfovibrio indicus 1355 species 1 0 species 1 0 57320 Pseudodesulfovibrio profundus 1225 2010 182210 Pseudodesulfovibrio aespoeensis 0 species 1 0 130 9 genus 52121 Desulfovibrio 1 872 184917 Desulfovibrio magneticus 996 0 species 1 1156 Desulfovibrio fairfieldensis 44742 1 species 0 881 Desulfovibrio vulgaris 1975 0 species 1 0 no rank 1 671 2593640 Desulfovibrio sp. G11 631220 671 0 1 species 1725232 Candidatus Desulfovibrio trichonymphae 1308 species 1 0 0 1 species 41954 Desulfovibrio piger 901 0 species 1 3073 876 Desulfovibrio desulfuricans species 1 0 858 58180 Desulfovibrio alaskensis 2794998 1242 genus 1 0 0 species 1 1242 880 Desulfovibrio salexigens 213117 1 Desulfohalobiaceae 526 1 0 family 3 genus 2 1 0 45662 1 Desulfohalobium 525 Desulfohalobium retbaense 45663 524 0 1 species 1896 Desulfomicrobiaceae 1 213116 4 family 0 85 1811 898 1 Desulfomicrobium genus 3 23 0 819 Desulfomicrobium orale 132132 1 species 0 969 Desulfomicrobium baculatum 899 1 species 0 Desulfobacterales 1 213118 9069 0 34 17 order family 8 7 0 213119 1 Desulfobacteraceae 4133 974 2295 1 genus 0 species 1 0 2296 Desulfobacterium autotrophicum 974 3 genus 0 4 Desulfococcus 1 896 1892 species 1 0 181663 Desulfococcus oleovorans 923 0 species 1 965 897 Desulfococcus multivorans genus 1 0 28222 687 0 species 1 687 28223 Desulfobacula toluolica 573 Desulfatibacillum 218207 1 2 genus 0 1 259354 Desulfatibacillum alkenivorans 572 0 species 1 Desulfobulbaceae 1 213121 4902 0 17 8 family Desulfurivibrio 427922 1 648 0 6 2 genus 1 species 0 Desulfurivibrio alkaliphilus 427923 642 2 genus 0 2 Desulfobulbus 1 893 2394 Desulfobulbus sp. ORNL 1986146 2392 1 species 0 0 2 2 genus 819 Desulfocapsa 53318 1 Desulfocapsa sulfexigens 65555 817 1 species 0 1024 109168 1 genus 0 species 1 0 84980 Desulfotalea psychrophila 1024 732 Desulfarculales 453227 1 4 order 0 10 722 Desulfarculaceae 1 453228 0 4 3 family 8 0 genus 2 1 453229 Desulfarculus 718 710 Desulfarculus baarsii 453230 1 species 0 2 0 order 6 1335 1 213113 Desulfurellales Desulfurellaceae 117942 1 1333 5 family 0 15 genus 2 10 0 84404 1 Hippea 607 84405 Hippea maritima 597 species 1 0 2 genus 0 7 Desulfurella 33001 1 711 33002 Desulfurella acetivorans 704 0 species 1 15996 Desulfuromonadales 69541 1 0 166 24 order 4678 Desulfuromonadaceae 1 213421 9 family 0 61 15 0 genus 3 1 890 Desulfuromonas 1611 2614637 951 0 no rank 1 0 1 species Desulfuromonas sp. DDH964 1823759 951 0 1 species Desulfuromonas soudanensis 1603606 645 5 genus 0 32 Pelobacter 18 1 3006 1 no rank 0 377 2620299 1842532 Pelobacter sp. SFB93 377 0 species 1 0 species 1 447 29542 Pelobacter acetylenicus 1 species 0 1501 Pelobacter propionicus 29543 19 Pelobacter carbinolicus 649 species 1 0 11152 Geobacteraceae 213422 1 14 family 0 160 10106 Geobacter 1 28231 11 genus 0 321 0 1 species Geobacter uraniireducens 351604 1202 2627627 2277 0 no rank 2 443143 Geobacter sp. M18 1128 0 species 1 1149 443144 Geobacter sp. M21 0 species 1 0 1 species 819 Geobacter pickeringii 345632 825 Geobacter lovleyi 313985 1 species 0 1072 Geobacter anodireducens 1340425 0 1 species 0 species 1 1184 35554 Geobacter sulfurreducens 1 species 0 Geobacter bemidjiensis 225194 807 747 Geobacter daltonii 1203471 1 species 0 0 1 species Geobacter metallireducens 28232 852 3 0 genus 2 392332 1 Geoalkalibacter 886 883 Geoalkalibacter subterraneus 483547 0 1 species Myxococcales 1 29 25044 0 397 38 order 0 suborder 3 1300 224462 3 family 0 13 Kofleriaceae 224464 1 1300 1287 1 162027 Haliangium genus 2 19 0 1268 80816 Haliangium ochraceum 0 species 1 0 suborder 8 80812 4817 49 1 Polyangiaceae 3683 20 0 family 5 Sorangium 39643 1 2825 0 18 2 genus 1 species 0 2807 Sorangium cellulosum 56 3 0 genus 2 838 50 1 Chondromyces 0 1 species 835 Chondromyces crocatus 52 1134 Sandaracinaceae 1055686 1 0 3 3 family 1131 Sandaracinus 1055688 1 2 genus 0 11 1 species 0 1120 Sandaracinus amylolyticus 927083 18530 80811 suborder 26 0 1 39 Archangiaceae 5382 family 9 100 0 1 44 Melittangium 1387 genus 2 8 0 1379 83453 Melittangium boletus 0 species 1 genus 2 3 0 1 42 Cystobacter 1203 0 species 1 1200 43 Cystobacter fuscus 0 12 2 genus 1142 Stigmatella 1 40 species 1 0 41 Stigmatella aurantiaca 1130 16 0 genus 2 1550 1 47 Archangium 0 1 species 1534 Archangium gephyra 48 0 42 5 family Anaeromyxobacteraceae 1 1524215 3626 Anaeromyxobacter 1 161492 3584 4 genus 0 61 0 no rank 2 1888 2620896 0 species 1 878 447217 Anaeromyxobacter sp. K 1 species 0 Anaeromyxobacter sp. Fw109-5 404589 1010 0 species 1 161493 Anaeromyxobacter dehalogenans 1635 5 0 family 3 1 1524213 Vulgatibacteraceae 801 Vulgatibacter 1 1524214 796 2 genus 0 14 782 1391653 Vulgatibacter incomptus species 1 0 1 31 Myxococcaceae 8721 66 0 family 9 Myxococcus 1 32 6289 0 243 5 genus Myxococcus hansupus 1297742 1081 0 1 species 1182 Myxococcus stipitatus 83455 1 species 0 2804 Myxococcus fulvus 33 1 species 0 0 1 species 979 Myxococcus xanthus 34 44 0 genus 3 1 83461 Corallococcus 2366 1 species 0 Corallococcus coralloides 184914 1175 0 species 1 35 Myxococcus macrosporus 1147 51119 Epsilonproteobacteria 29547 1 72 class 0 57 1 213849 Campylobacterales 49968 order 66 495 0 5640 1 72293 Helicobacteraceae 7 0 family 15 1 843 Wolinella 603 genus 2 1 0 602 844 Wolinella succinogenes 0 species 1 9 0 genus 12 5030 209 1 Helicobacter 0 1 species Helicobacter cetorum 138563 355 0 1 species Helicobacter bilis 37372 471 1 species 0 79 Helicobacter acinonychis 212 314 213 Helicobacter cinaedi 0 species 1 0 1 no rank 2593540 420 0 1 species Helicobacter sp. MIT 01-6242 222136 420 1 species 0 144 Helicobacter mustelae 217 0 1 species 224 Helicobacter typhlonius 76936 0 species 1 265 32025 Helicobacter hepaticus 0 1 species Helicobacter pylori 210 2325 178 214 Helicobacter felis 0 species 1 0 1 species Helicobacter himalayensis 1591088 246 2771472 1625 0 family 5 0 3 3 genus 1101 Sulfurovum 1 265570 569 2646778 no rank 1 0 387093 Sulfurovum sp. NBC37-1 569 0 species 1 529 Sulfurovum lithotrophicum 206403 1 species 0 Nitratifractor 269260 1 524 2 genus 0 2 species 1 0 522 269261 Nitratifractor salsuginis 1823 2771471 4 family 0 316 1 286130 Sulfuricurvum 2 0 genus 2 148813 Sulfuricurvum kujiense 314 species 1 0 genus 2 0 202746 1507 1 species 0 720 Sulfurimonas denitrificans 39766 1 species 0 Sulfurimonas autotrophica 202747 787 41 family 0 870 Campylobacteraceae 72294 1 40385 40 0 genus 9 4900 57665 1 Sulfurospirillum species 1 0 65553 Sulfurospirillum deleyianum 1206 species 1 0 331 366522 Sulfurospirillum cavolei 0 1 species Sulfurospirillum halorespirans 194424 270 639 66821 Sulfurospirillum multivorans 0 species 1 no rank 3 0 2618290 1759 447 1986224 Sulfurospirillum sp. SL2-1 species 1 0 species 1 0 220622 Sulfurospirillum sp. JPD-1 692 1581011 Sulfurospirillum sp. UCH001 620 species 1 0 0 1 species Sulfurospirillum barnesii 44674 655 5682 2321108 0 no rank 5 2321207 1487 no rank 1 0 species 1 0 1487 944547 Arcobacter sp. L genus 3 3 0 2975 28196 1 Arcobacter 0 species 1 28199 Arcobacter nitrofigilis 1289 1 species 0 1683 Arcobacter butzleri 28197 2321187 1220 genus 1 0 0 species 1 1220 1850254 Arcobacter sp. LPB0137 26 genus 0 245 Campylobacter 1 194 28933 0 species 1 497724 Campylobacter subantarcticus 857 1 species 0 2334 Campylobacter lari 201 5952 195 Campylobacter coli 0 species 1 716 Campylobacter hyointestinalis 198 0 1 species 1 species 0 Campylobacter insulaenigrae 260714 802 1 species 0 550 Campylobacter ureolyticus 827 0 1 species 723 Campylobacter concisus 199 species 1 0 200 Campylobacter curvus 626 1 species 0 Campylobacter peloridis 488546 674 1995 2593542 no rank 4 0 species 1 0 1500960 Campylobacter sp. RM16704 677 410 Campylobacter sp. RM6137 1660073 1 species 0 526 1660074 Campylobacter sp. RM8964 0 species 1 382 Campylobacter sp. RM12175 1660076 0 1 species species 1 0 716 1031542 Campylobacter volucris 0 species 1 429 824 Campylobacter gracilis species 1 0 464 76517 Campylobacter hominis species 1 0 522485 Campylobacter avium 398 374106 Campylobacter cuniculorum 473 species 1 0 241 28898 Campylobacter helveticus 0 species 1 0 species 1 75658 Campylobacter lanienae 613 0 species 1 1283 1965231 Campylobacter pinnipediorum 0 species 1 1453 206 Campylobacter sputorum 0 1 species 750 Campylobacter iguaniorum 1244531 0 species 1 197 Campylobacter jejuni 5505 0 1 species 1134 Campylobacter fetus 196 order 5 11 0 1094 235899 1 Nautiliales family 3 1 0 650 1 224467 Nautiliaceae 649 1 191291 Nautilia 5 0 genus 2 0 species 1 244787 Nautilia profundicola 644 2795691 433 0 family 1 0 genus 1 433 269258 0 1 no rank 433 2624044 1 species 0 Nitratiruptor sp. SB155-2 387092 433 987 580370 0 class 5 order 5 78 0 987 1 580371 Mariprofundales 4 family 0 3 Mariprofundaceae 580372 1 909 906 Mariprofundus 377315 1 0 3 3 genus 475 1921087 Mariprofundus ferrinatatus species 1 0 0 species 1 1921086 Mariprofundus aestuarium 428 556 class 0 755 Alphaproteobacteria 1 28211 230859 order 7 1 0 1706 54526 1 Pelagibacterales family 5 0 1292 1655514 1655516 753 0 2 no rank species 1 0 859653 alpha proteobacterium HIMB5 509 alpha proteobacterium HIMB59 744985 244 0 1 species Candidatus Pelagibacter 198251 1 539 3 genus 0 1 1 species 0 Candidatus Pelagibacter ubique 198252 266 272 2647897 1 no rank 0 0 1 species Candidatus Pelagibacter sp. IMCC9063 1002672 272 2045213 413 0 1 genus 1925548 Candidatus Fonsibacter ubiquis 413 0 species 1 order 64 208 0 204441 1 Rhodospirillales 30078 34 family 0 228 Acetobacteraceae 433 1 13660 genus 2 7 0 347 1 153497 Kozakia 340 Kozakia baliensis 153496 0 1 species 125216 1 Roseomonas 1761 31 0 genus 3 257708 Roseomonas gilardii 836 0 species 1 0 1 no rank 2617492 894 0 1 species Roseomonas sp. FDAARGOS_362 2018065 894 2 genus 0 7 346 Asaia 1 91914 0 1 species 339 Asaia bogorensis 91915 0 55 3 genus Gluconobacter 1 441 1545 0 species 1 442 Gluconobacter oxydans 1114 0 1 species Gluconobacter albidus 318683 376 0 2 2 genus 597 Neoasaia 1 320496 595 Neoasaia chiangmaiensis 320497 0 1 species 1602345 471 0 genus 1 1510841 Parasaccharibacter apium 471 0 species 1 genus 2 8 0 556 1 89583 Gluconacetobacter 1 species 0 Gluconacetobacter diazotrophicus 33996 548 Acidiphilium 522 1 1146 3 genus 0 40 559 Acidiphilium multivorum 62140 0 1 species species 1 0 524 Acidiphilium cryptum 547 45 0 genus 8 1 434 Acetobacter 3747 262 Acetobacter pomorum 65959 1 species 0 404 446692 Acetobacter senegalensis 0 species 1 0 species 1 438 Acetobacter pasteurianus 1543 0 subgenus 1 434 151157 species 1 0 435 Acetobacter aceti 434 1 species 0 Acetobacter oryzifermentans 1633874 268 104102 Acetobacter tropicalis 394 species 1 0 0 1 species 397 Acetobacter persici 1076596 1 1434011 Komagataeibacter 1993 37 0 genus 5 0 species 1 33995 Komagataeibacter europaeus 339 1 species 0 394 Komagataeibacter nataicola 265960 species 1 0 28448 Komagataeibacter xylinus 872 351 Komagataeibacter medellinensis 1177712 1 species 0 923 Granulibacter 1 364409 0 4 2 genus 0 1 species Granulibacter bethesdensis 364410 919 16210 Rhodospirillaceae 1 41295 29 family 0 222 5647 1 191 Azospirillum 107 0 genus 5 1175 528244 Azospirillum thiophilum 0 species 1 Azospirillum brasilense 192 1680 1 species 0 species 1 0 1226968 Azospirillum humicireducens 730 Azospirillum lipoferum 193 1955 0 1 species 2 genus 0 11 Niveispirillum 1543704 1 1121 1110 Niveispirillum cyanobacteriorum 1612173 0 1 species Magnetospirillum 1 13134 3116 5 genus 0 60 55518 Magnetospirillum gryphiswaldense 873 0 species 1 0 no rank 2 1383 2617991 0 species 1 1663591 Magnetospirillum sp. XM-1 679 0 1 species 704 Magnetospirillum sp. ME-1 1639348 species 1 0 84159 Magnetospirillum magneticum 800 genus 1 0 1612157 439 1 species 0 439 Pararhodospirillum photometricum 1084 0 genus 1 1263978 421 1 species 0 421 Candidatus Endolissoclinum faulkneri 1263979 genus 2 38 0 1543705 1 Nitrospirillum 982 0 species 1 944 28077 Nitrospirillum amazonense 0 13 3 genus 1202 Rhodospirillum 1081 1 511 Rhodospirillum rubrum 1085 0 1 species 678 Rhodospirillum centenum 34018 0 1 species 2 genus 0 11 Haematospirillum 1 1804663 236 Haematospirillum jordaniae 1549855 225 1 species 0 20 0 genus 2 485 1182780 1 Magnetospira 2685734 465 no rank 1 0 0 species 1 465 1288970 Magnetospira sp. QH-2 171436 1 Tistrella 1289 genus 2 27 0 Tistrella mobilis 171437 1262 0 1 species 168934 1 Thalassospira 1050 genus 3 3 0 0 species 1 574 2048283 Thalassospira sp. CSC3H3 473 Thalassospira xiamenensis 220697 1 species 0 order 6 13 0 1088 1921002 1 Holosporales 1 2100208 Caedimonadaceae 399 2 0 family 2 0 1 genus 1509243 397 1 species 0 397 Candidatus Nucleicultrix amoebiphila 1509244 0 1 family 411 44746 0 1 no rank 204454 411 86106 endosymbiont of Acanthamoeba sp. UWC8 411 species 1 0 Candidatus Paracaedibacteraceae 1 1777752 265 2 family 0 2 0 1 genus 1521255 263 1 species 0 263 Candidatus Paracaedibacter acanthamoebae 91604 11277 Rickettsiales 766 1 55 order 0 21 Anaplasmataceae 1 942 5290 23 family 0 3 5 0 genus 6 1654 1 943 Ehrlichia species group 4 0 106178 1348 944 Ehrlichia canis 308 0 species 1 Ehrlichia ruminantium 779 381 1 species 0 0 species 1 35795 Ehrlichia muris 331 1 species 0 328 Ehrlichia chaffeensis 945 106181 301 0 no rank 1 301 Ehrlichia sp. HF 391036 0 1 species genus 4 4 0 580 33993 1 Neorickettsia 116 950 Neorickettsia risticii 0 species 1 species 1 0 951 Neorickettsia sennetsu 354 Neorickettsia helminthoeca 33994 106 1 species 0 Anaplasma 1 768 395 4 genus 0 2 769 Anaplasma centrale 60 species 1 0 106179 238 0 species group 1 948 Anaplasma phagocytophilum 238 species 1 0 0 species 1 770 Anaplasma marginale 95 tribe 8 0 952 2658 genus 8 36 0 2658 953 1 Wolbachia 2622 2640676 no rank 7 0 species 1 0 77551 Wolbachia endosymbiont of Onchocerca volvulus 376 1 species 0 Wolbachia endosymbiont of Onchocerca ochengi 100901 539 409 Wolbachia sp. wRi 66084 0 1 species 155 Wolbachia endosymbiont of Cimex lectularius 246273 1 species 0 1 species 0 459 Wolbachia endosymbiont of Drosophila melanogaster 163164 species 1 0 80849 Wolbachia endosymbiont of Brugia malayi 154 Wolbachia endosymbiont of Drosophila simulans 77038 530 0 1 species family 28 6 0 1 775 Rickettsiaceae 4933 0 tribe 25 4675 33988 4033 Rickettsia 780 1 23 genus 0 263 114292 438 2 species group 0 0 1 species Rickettsia prowazekii 782 188 250 785 Rickettsia typhi 0 species 1 763 1129742 0 species group 2 33990 Rickettsia bellii 560 0 species 1 203 788 Rickettsia canadensis species 1 0 0 species group 17 114277 2311 species 1 0 33 35794 Rickettsia slovaca 33989 Rickettsia amblyommatis 66 0 species 1 0 1 species Rickettsia australis 787 474 81 Rickettsia peacockii 47589 0 1 species Rickettsia heilongjiangensis 226665 109 0 1 species 109232 Rickettsia monacensis 205 species 1 0 Rickettsia montanensis 33991 157 0 1 species species 1 0 35788 Rickettsia africae 53 48 35790 Rickettsia japonica species 1 0 species 1 0 42862 Rickettsia felis 371 0 1 species 303 Rickettsia akari 786 108 35791 Rickettsia massiliae 0 species 1 species 1 0 781 Rickettsia conorii 120 0 1 species 31 Rickettsia parkeri 35792 1 species 0 21 Rickettsia philipii 1105106 33992 Rickettsia rhipicephali 93 0 species 1 38 783 Rickettsia rickettsii species 1 0 no rank 1 0 114295 258 1 species 0 258 Rickettsia endosymbiont of Bemisia tabaci 337479 Orientia 1 69474 642 0 1 2 genus 641 Orientia tsutsugamushi 784 1 species 0 0 3 2 genus Candidatus Phycorickettsia 2115980 1 252 0 1 species 249 Candidatus Phycorickettsia trachydisci 2115978 2 family 0 2 237 Candidatus Midichloriaceae 1328881 1 411566 235 genus 1 0 235 234827 Candidatus Midichloria mitochondrii 0 species 1 1 no rank 0 1699067 796 796 1528098 Rickettsiales bacterium Ac37b species 1 0 0 7 no rank 2796 82117 1 clade 0 62654 455 455 767891 0 1 genus 767892 Candidatus Puniceispirillum marinum 455 species 1 0 0 2 2 genus 529 Micavibrio 213485 1 349221 Micavibrio aeruginosavorus 527 species 1 0 1632780 1 Phreatobacter 1240 genus 2 15 0 0 species 1 1868589 Phreatobacter sp. S-12 1225 Polymorphum 1 991903 572 0 7 2 genus 1 species 0 Polymorphum gilvum 991904 565 0 104 20 order Caulobacterales 204458 1 9440 family 19 206 0 76892 1 Caulobacteraceae 9336 664 1 76890 Asticcacaulis 2 0 genus 2 0 1 species Asticcacaulis excentricus 78587 662 1 no rank 0 378 81440 0 1 species Caulobacteraceae bacterium OTSz_A_272 1759059 378 3271 41275 1 Brevundimonas genus 7 115 0 0 species 1 562 41276 Brevundimonas vesicularis 3 no rank 0 1468 2622653 0 1 species 555 Brevundimonas sp. LM2 1938605 0 1 species Brevundimonas sp. GW460-12-10-14-LB2 1827469 569 1532555 Brevundimonas sp. DS20 344 0 species 1 447 Brevundimonas subvibrioides 74313 0 1 species 0 species 1 588932 Brevundimonas naejangsanensis 679 1 20 Phenylobacterium 562 genus 2 5 0 1 species 0 Phenylobacterium zucineum 284016 557 Caulobacter 1 75 4255 6 genus 0 146 species 1 0 566 69666 Caulobacter mirabilis 1229 Caulobacter vibrioides 155892 0 1 species 608 88688 Caulobacter segnis species 1 0 778 69395 Caulobacter henricii 0 species 1 928 2648921 no rank 1 0 366602 Caulobacter sp. K31 928 species 1 0 204457 1 Sphingomonadales 33730 order 82 163 0 Erythrobacteraceae 1 335929 8127 0 107 22 family genus 1 0 2800685 360 species 1 0 360 543877 Altererythrobacter marensis 1855416 1138 genus 2 0 0 species 1 192812 Erythrobacter flavus 501 1 species 0 Erythrobacter seohaensis 266951 637 0 6 no rank 2800788 2695 87 0 genus 3 1566 1 1041 Erythrobacter 1112 Porphyrobacter neustonensis 368 0 species 1 1111 39960 Erythrobacter litoralis species 1 0 Porphyrobacter 1 1111 1129 0 44 3 genus 0 no rank 2 1085 2683265 Porphyrobacter HT-58-2 2023229 473 1 species 0 0 species 1 1896196 Porphyrobacter sp. LM 6 612 genus 2 0 2800686 494 species 1 0 1982042 Altererythrobacter mangrovi 219 0 species 1 692370 Altererythrobacter dongtanensis 275 18 0 genus 3 1265 1 1295327 Croceicoccus Croceicoccus naphthovorans 1348774 528 0 1 species 0 1 species 719 Croceicoccus marinus 450378 Altererythrobacter 1 361177 818 0 41 4 genus Altererythrobacter epoxidivorans 361183 213 0 1 species 386 1267766 Altererythrobacter atlanticus species 1 0 0 1 species 178 Altererythrobacter ishigakiensis 476157 genus 1 0 2800682 355 355 Altererythrobacter namhicola 645517 1 species 0 0 2 genus 895 2800681 708 502682 Erythrobacter gangjinensis 0 species 1 0 species 1 187 1648404 Erythrobacter atlanticus Sphingomonadaceae 41297 1 25440 0 268 59 family 2 genus 0 12 852 Zymomonas 1 541 species 1 0 542 Zymomonas mobilis 840 1 genus 0 2685927 471 471 Sphingomonas sp. JJ-A5 1921510 0 1 species Rhizorhabdus 1649486 1 587 0 11 2 genus 0 species 1 576 1850238 Rhizorhabdus dicambivorans Sphingopyxis 165697 1 5333 10 genus 0 83 0 4 no rank 2344 2614943 0 1 species 604 Sphingopyxis sp. QXT-31 1357916 Sphingopyxis sp. MG 1866325 463 0 1 species 0 1 species Sphingopyxis sp. LPB0140 1913578 329 Sphingopyxis sp. 113P3 292913 948 0 1 species 33052 Sphingopyxis terrae 296 species 1 0 0 1 species Sphingopyxis macrogoltabida 33050 1101 species 1 0 526 1515612 Sphingopyxis fribergensis 484 Sphingopyxis granuli 267128 1 species 0 0 species 1 499 117207 Sphingopyxis alaskensis 360 1 72173 Citromicrobium 4 0 genus 2 0 1 no rank 2630544 356 356 Citromicrobium sp. JL477 1634516 1 species 0 150203 1 Blastomonas 574 8 0 genus 2 566 2626550 0 1 no rank Blastomonas sp. RAC04 1842535 566 0 1 species genus 1 0 2709685 258 species 1 0 258 266812 Sphingorhabdus flavimaris 0 7 3 genus 923 Sphingorhabdus 1 1434046 0 no rank 2 916 2614947 Sphingorhabdus sp. YGSMI21 2077182 295 0 1 species 621 Sphingorhabdus sp. M41 1806885 1 species 0 Sphingobium 1 165695 6062 0 149 15 genus 2611147 2448 0 6 no rank 0 1 species Sphingobium sp. YBL2 484429 387 species 1 0 627192 Sphingobium sp. SYK-6 479 0 species 1 541 1843368 Sphingobium sp. RAC03 352 1315974 Sphingobium sp. TKS 0 species 1 1 species 0 360 Sphingobium sp. MI1205 407020 0 1 species 329 Sphingobium sp. EP60837 1855519 0 species 1 459 120107 Sphingobium cloacae 0 1 species 454 Sphingobium baderi 1332080 0 species 1 269 76947 Sphingobium herbicidovorans Sphingobium chlorophenolicum 46429 449 0 1 species 0 1 species Sphingobium japonicum 332056 419 0 species 1 13690 Sphingobium yanoikuyae 603 1 species 0 325 Sphingobium hydrophobicum 1673076 487 Sphingobium indicum 332055 1 species 0 36 0 genus 5 2320 165696 1 Novosphingobium Novosphingobium pentaromativorans 205844 541 1 species 0 158500 Novosphingobium resinovorum 669 species 1 0 species 1 0 48935 Novosphingobium aromaticivorans 439 no rank 1 0 635 2644732 0 species 1 635 702113 Novosphingobium sp. PP1Y genus 15 131 0 13687 1 Sphingomonas 7432 Sphingomonas hengshuiensis 1609977 425 1 species 0 0 610 2 species Sphingomonas wittichii 160791 1 1234 Sphingomonas sp. DC-6 1283312 624 1 strain 0 species 1 0 93064 Sphingomonas koreensis 533 397260 Sphingomonas sanxanigenens 465 0 species 1 480 152682 Sphingomonas melonis 0 species 1 0 species 1 1549858 Sphingomonas taxi 479 3285 196159 0 6 no rank 1 species 0 475 Sphingomonas sp. NIC1 1961362 1327635 Sphingomonas sp. Cra20 797 species 1 0 0 1 species 448 Sphingomonas sp. LM7 1938607 Sphingomonas sp. KC8 1030157 389 1 species 0 0 species 1 745310 Sphingomonas sp. MM-1 550 626 Sphingomonas sp. LK11 1390395 0 1 species 0 species 1 400 1560345 Sphingomonas panacis 5 order 0 1693 2800060 69657 1 Hyphomonadaceae 1693 family 5 23 0 0 15 3 genus Hyphomonas 85 1 983 1 species 0 Hyphomonas neptunium 81032 636 332 2630699 no rank 1 0 332 Hyphomonas sp. Mor2 1906738 1 species 0 2723 687 0 1 genus 2724 Hirschia baltica 687 0 species 1 order 211 838 0 356 1 Rhizobiales 104161 1042 Beijerinckiaceae 1 45404 5 family 0 1 0 18 2 genus 422 Methylocella 120652 1 Methylocella silvestris 199596 404 1 species 0 Beijerinckia 1 532 619 0 16 2 genus 533 Beijerinckia indica 603 species 1 0 Rhodobiaceae 119043 1 595 0 4 3 family Parvibaculum 256616 1 591 0 24 2 genus 567 Parvibaculum lavamentivorans 256618 1 species 0 Rhizobiaceae 82115 1 33972 54 family 0 338 0 35 no rank 24504 227290 1 1525371 Neorhizobium 1023 1 0 genus 2 Neorhizobium galegae 399 1022 0 1 species 26 genus 0 935 17529 Rhizobium 379 1 2263 Rhizobium etli 29449 1 species 0 396 Rhizobium phaseoli 1214 species 1 0 0 1 species Rhizobium gallicum 56730 1126 Rhizobium leguminosarum 384 3935 0 1 species 1 species 0 Rhizobium tropici 398 581 0 no rank 20 7475 2613769 0 1 species 147 Rhizobium sp. N731 1703966 1703962 Rhizobium sp. N1341 1 0 species 1 0 species 1 2020311 Rhizobium sp. Kim5 346 1703961 Rhizobium sp. N1314 147 species 1 0 Rhizobium sp. S41 1869170 633 1 species 0 1 species 0 774 Rhizobium sp. Y9 1914541 1 species 0 Rhizobium sp. N113 1703960 1 Rhizobium sp. IE4771 1301032 489 1 species 0 1 species 0 2 Rhizobium sp. N741 1703967 2020313 Rhizobium sp. TAL182 194 0 species 1 1703965 Rhizobium sp. N6212 44 species 1 0 486 Rhizobium sp. NXC24 2048897 1 species 0 0 1 species Rhizobium sp. 10195 2028343 793 547 1703969 Rhizobium sp. N324 0 species 1 352 Rhizobium sp. NXC14 1981173 1 species 0 0 species 1 911 1571470 Rhizobium sp. ACO-34A 0 species 1 1125847 Rhizobium sp. NT-26 537 Rhizobium sp. CIAT894 2020312 399 1 species 0 0 1 species Rhizobium sp. IRBG74 424182 628 1 species 0 44 Rhizobium sp. N621 1703964 5952 1 357 Agrobacterium genus 7 70 0 1 species 0 Agrobacterium vitis 373 858 1 species 0 Agrobacterium rhizogenes 359 630 2632611 1160 0 2 no rank 861208 Agrobacterium sp. H13-3 525 species 1 0 Agrobacterium sp. RAC06 1842536 635 0 1 species 2 species group 0 1183400 3234 1 species 0 Agrobacterium tumefaciens 358 2593 0 species 1 641 1176649 Agrobacterium fabrum 7 0 genus 2 882 1 323620 Shinella 875 2643062 no rank 1 0 875 Shinella sp. HZN7 879274 0 1 species 34019 1 Liberibacter 1486 genus 6 26 0 34020 Candidatus Liberibacter africanus 249 0 species 1 0 species 1 309868 Candidatus Liberibacter americanus 325 233 556287 Candidatus Liberibacter solanacearum species 1 0 419 1273132 Liberibacter crescens 0 species 1 0 species 1 234 34021 Candidatus Liberibacter asiaticus 0 no rank 10 6762 227292 genus 7 117 0 28105 1 Sinorhizobium 5419 0 species 1 110321 Sinorhizobium medicae 639 species 1 0 382 Sinorhizobium meliloti 1348 Sinorhizobium americanum 194963 719 0 1 species 2613772 1241 no rank 2 0 1842534 Sinorhizobium sp. RAC02 808 0 species 1 433 Sinorhizobium sp. CCBAU 05631 794846 1 species 0 species group 1 0 1355 663276 1355 Sinorhizobium fredii 380 1 species 0 3 genus 0 9 Ensifer 1 106591 1343 579 Ensifer sojae 716925 0 1 species 106592 Ensifer adhaerens 755 species 1 0 1 118882 Brucellaceae 4800 14 0 family 20 0 656 14 genus 1932 Brucella 1 234 36855 Brucella canis 102 0 species 1 444163 Brucella microti 54 0 species 1 0 1 species 41 Brucella ovis 236 172 Brucella vulpis 981386 0 1 species 120576 Brucella pinnipedialis 104 species 1 0 0 species 1 235 Brucella abortus 115 483 2632610 no rank 4 0 0 1 species 138 Brucella sp. 09RB8910 1844051 1 species 0 154 Brucella sp. 09RB8471 1149952 1885919 Brucella sp. 141012304 162 0 species 1 0 1 species Brucella sp. 2002734562 1891098 29 120577 Brucella ceti 108 0 species 1 Brucella suis 29461 56 1 species 0 Brucella melitensis 29459 41 1 species 0 2854 Ochrobactrum 1 528 0 20 5 genus 0 1 species 936 Ochrobactrum pseudogrignonense 419475 771 Ochrobactrum pituitosum 571256 0 1 species 551 271865 Ochrobactrum sp. A44 0 species 1 Ochrobactrum anthropi 529 576 0 1 species 2839 1 255475 Aurantimonadaceae family 7 24 0 2231 Martelella 293088 1 4 genus 0 88 726 2629616 no rank 1 0 1 species 0 726 Martelella sp. AD-3 686597 0 1 species Martelella mediterranea 293089 685 732 Martelella endophytica 1486262 0 1 species genus 2 7 0 414371 1 Aureimonas 584 0 1 no rank 2615206 577 1 species 0 Aureimonas sp. AU20 1349819 577 0 6 no rank 119042 1793 genus 2 3 0 1484898 1 Methyloceanibacter 523 0 species 1 520 1384459 Methyloceanibacter caenitepidi 763 Hartmannibacter 1 1572860 0 6 2 genus 1 species 0 Hartmannibacter diazotrophicus 1482074 757 507 Pseudorhodoplanes 1 1734920 0 4 2 genus 503 Pseudorhodoplanes sinuspersici 1235591 0 1 species 6 family 0 9 1604 Methylocystaceae 31993 1 977 Methylocystis 1 133 3 genus 0 6 species 1 0 655015 Methylocystis bryophila 459 0 1 no rank 512 2625913 0 1 species Methylocystis sp. SC2 187303 512 2 genus 0 5 Methylosinus 1 425 618 426 Methylosinus trichosporium 613 species 1 0 4 family 0 2 Chelatococcaceae 2036754 1 1425 Chelatococcus 1 28209 1423 0 36 3 genus 1 species 0 639 Chelatococcus daeguensis 444444 0 no rank 1 2638111 748 Chelatococcus sp. CO-6 1702325 748 1 species 0 16 0 family 7 2306 335928 1 Xanthobacteraceae 765 Starkeya 1 152053 2 genus 0 35 1 species 0 Starkeya novella 921 730 Azorhizobium 1 6 914 0 12 2 genus species 1 0 902 7 Azorhizobium caulinodans genus 2 6 0 611 1 279 Xanthobacter species 1 0 605 280 Xanthobacter autotrophicus 11839 Methylobacteriaceae 119045 1 15 family 0 34 0 234 9 genus Methylobacterium 1 407 7245 866 Methylobacterium phyllosphaerae 418223 0 1 species species 1 0 31998 Methylobacterium radiotolerans 1145 2660 2615210 0 no rank 3 925818 Methylobacterium sp. AMS5 677 0 species 1 0 1 species Methylobacterium sp. C1 1479019 1064 0 species 1 919 426117 Methylobacterium sp. 4-46 Methylobacterium oryzae 334852 910 0 1 species 714 114616 Methylobacterium nodulans species 1 0 species 1 0 270351 Methylobacterium aquaticum 716 1047 1 186650 Microvirga genus 2 4 0 0 1 species Microvirga ossetica 1882682 1043 genus 3 0 2282523 3513 0 species 1 223967 Methylobacterium populi 1009 1 species 0 1995 Methylobacterium extorquens 408 0 species 1 29429 Methylobacterium zatmanii 509 6037 Bartonellaceae 1 772 0 8 18 family genus 17 63 0 1 773 Bartonella 6029 species 1 0 1052 1686310 Bartonella apis Bartonella quintana 803 117 1 species 0 276 56426 Bartonella clarridgeiae 0 species 1 1 species 0 383 Bartonella vinsonii 33047 2645622 1981 no rank 6 0 1933910 Bartonella sp. A1379B 280 species 1 0 1933906 Bartonella sp. JB15 323 species 1 0 0 1 species Bartonella sp. JB63 1933907 323 598 1933904 Bartonella sp. WD16.2 0 species 1 1 species 0 229 Bartonella sp. Raccoon60 1933912 0 species 1 515256 Bartonella sp. 1-1C 228 species 1 0 244 774 Bartonella bacilliformis species 1 0 388640 Bartonella australis 193 1 species 0 308 Bartonella ancashensis 1318743 1 species 0 599 Bartonella tribocorum 85701 Bartonella grahamii 33045 373 0 1 species 440 Bartonella henselae 38323 1 species 0 41 0 family 19 1 45401 Hyphomicrobiaceae 6726 394 1 1068 Rhodomicrobium 1 0 genus 2 0 1 species Rhodomicrobium vannielii 1069 393 692 Blastochloris 1 59282 2 genus 0 75 1 species 0 617 Blastochloris viridis 1079 39 0 genus 4 1853 46913 1 Devosia no rank 3 0 196773 1814 1 species 0 Devosia sp. I507 2083786 453 0 1 species Devosia sp. A16 1736675 558 1 species 0 803 Devosia sp. H5989 1643450 Hyphomicrobium 1 81 1927 0 25 4 genus 0 1 no rank 2619925 512 Hyphomicrobium sp. MC1 717785 512 1 species 0 1 species 0 535 Hyphomicrobium nitrativorans 1427356 0 1 species 855 Hyphomicrobium denitrificans 53399 1 29407 Rhodoplanes 777 28 0 genus 2 2619116 749 1 no rank 0 Rhodoplanes sp. Z2-YC6860 674703 749 1 species 0 genus 2 1 0 523 1 119044 Filomicrobium species 1 0 522 1608628 Candidatus Filomicrobium marinum 18 0 genus 2 519 1082930 1 Pelagibacterium 531813 Pelagibacterium halotolerans 501 species 1 0 family 26 226 0 1 41294 Bradyrhizobiaceae 17714 0 36 5 genus 2995 Bosea 85413 1 0 3 no rank 1955 2653178 1 species 0 590 Bosea sp. AS-1 2015316 576 1792307 Bosea sp. PAMC 26642 0 species 1 1 species 0 Bosea sp. RAC05 1842539 789 1 species 0 1004 Bosea vaviloviae 1526658 483 Oligotropha 40136 1 0 6 2 genus 477 Oligotropha carboxidovorans 40137 0 1 species genus 2 3 0 465 1 1649510 Variibacter species 1 0 1333996 Variibacter gotjawalensis 462 1073 1 Rhodopseudomonas 4021 genus 2 48 0 0 species 1 3973 1076 Rhodopseudomonas palustris 0 7 3 genus 632 Nitrobacter 1 911 0 1 species Nitrobacter hamburgensis 912 364 913 Nitrobacter winogradskyi 261 0 species 1 8892 Bradyrhizobium 1 374 0 192 11 genus 1239 375 Bradyrhizobium japonicum 0 species 1 species 1 0 44255 Bradyrhizobium oligotrophicum 674 1 species 0 640 Bradyrhizobium icense 1274631 1 species 0 Bradyrhizobium diazoefficiens 1355477 1480 0 no rank 6 2631580 4667 115808 Bradyrhizobium sp. ORS 285 806 species 1 0 0 1 species Bradyrhizobium sp. ORS 278 114615 794 835 Bradyrhizobium sp. CCGE-LA001 1223566 0 1 species 0 1 species Bradyrhizobium sp. 376 576 1 species 0 875 Bradyrhizobium sp. SK17 2057741 1 species 0 781 Bradyrhizobium sp. BTAi1 288000 62 0 family 20 1 69277 Phyllobacteriaceae 10631 975 1 31988 Aminobacter 8 0 genus 2 967 Aminobacter aminovorans 83263 0 1 species 0 4 2 genus 533 Chelativorans 1 449972 2643807 529 no rank 1 0 1 species 0 529 Chelativorans sp. BNC1 266779 2 genus 0 19 569 Hoeflea 274591 1 2614931 550 no rank 1 0 species 1 0 1620421 Hoeflea sp. IMCC20628 550 1 245876 Nitratireductor 745 genus 2 5 0 0 1 species Nitratireductor basaltis 472175 740 Phyllobacterium 28100 1 531 0 3 2 genus 528 1867719 Phyllobacterium zundukense species 1 0 68287 1 Mesorhizobium 7216 110 0 genus 9 1016 325217 no rank 1 0 Mesorhizobium sp. WSM1497 278153 1016 1 species 0 0 1 species Mesorhizobium sp. B7 1670800 676 Mesorhizobium loti 381 902 1 species 0 1 species 0 730 Mesorhizobium opportunistum 593909 2066070 Mesorhizobium japonicum 821 species 1 0 688 Mesorhizobium australicum 536018 1 species 0 0 1 species 882 Mesorhizobium amorphae 71433 species 1 0 39645 Mesorhizobium ciceri 1391 3 order 0 448 255473 448 Parvularculaceae 1 255474 0 1 3 family 1 0 genus 2 447 1 208215 Parvularcula 1 species 0 446 Parvularcula bermudensis 208216 0 232 90 order 32811 Rhodobacterales 1 204455 family 89 492 0 1 31989 Rhodobacteraceae 32579 2211641 378 1 genus 0 1 species 0 Loktanella vestfoldensis 245188 378 415 191028 genus 1 0 133924 Leisingera methylohalidivorans 415 species 1 0 0 8 4 genus Octadecabacter 1 53945 957 1458307 Octadecabacter temperatus 273 species 1 0 1217908 Octadecabacter antarcticus 427 species 1 0 249 53946 Octadecabacter arcticus 0 species 1 302485 1 Phaeobacter 3237 26 0 genus 5 60890 Phaeobacter gallaeciensis 971 0 species 1 1 species 0 398 Phaeobacter porticola 1844006 0 1 species 1136 Phaeobacter inhibens 221822 1 species 0 706 Phaeobacter piscinae 1580596 394 Jannaschia 1 188905 0 1 2 genus 0 no rank 1 393 2645469 species 1 0 290400 Jannaschia sp. CCS1 393 42 0 genus 4 34008 1 Rhodovulum 1763 2631432 995 0 no rank 2 634 308754 Rhodovulum sp. MB263 species 1 0 361 1564506 Rhodovulum sp. P5 0 species 1 726 35806 Rhodovulum sulfidophilum species 1 0 genus 2 0 263377 1521 Thiobacimonas profunda 1229727 681 1 species 0 0 1 no rank 2640570 840 840 1792508 Yangia sp. CCB-MM3 species 1 0 227873 1 Pannonibacter 981 genus 2 13 0 968 Pannonibacter phragmitetus 121719 0 1 species 0 1 genus 2 Thalassococcus 436357 5 0 genus 3 1161 60136 1 Sulfitobacter no rank 1 0 196795 713 1 species 0 Sulfitobacter sp. AM1-D1 1917485 713 1 species 0 Sulfitobacter pseudonitzschiae 1402135 443 2 genus 0 5 648 Sagittula 58842 1 0 no rank 1 2624628 643 643 Sagittula sp. P11 2009329 1 species 0 5 genus 0 32 2679 Rhodobacter 1 1060 412 Rhodobacter capsulatus 1061 0 1 species 1358 Rhodobacter sphaeroides 1063 1 species 0 0 2 no rank 877 196779 450 2033869 Rhodobacter sp. CZR27 species 1 0 Rhodobacter sp. LPB0142 1850250 427 0 1 species genus 1 0 204 1284657 204 Planktomarina temperata 1284658 0 1 species 349 Marivivens 1759396 1 2 genus 0 14 335 2622455 1 no rank 0 335 1920883 Marivivens sp. JLT3646 species 1 0 genus 2 2 0 1609958 1 Confluentimicrobium 485 483 2643318 no rank 1 0 1 species 0 483 Confluentimicrobium sp. EMB200-NS6 1609966 0 49 9 genus 4306 Paracoccus 265 1 1 species 0 495 Paracoccus aminovorans 34004 1077935 Paracoccus zhejiangensis 539 species 1 0 381 1945662 Paracoccus contaminans species 1 0 147645 Paracoccus yeei 776 species 1 0 species 1 0 481 2065379 Paracoccus sp. CBA4604 0 species 1 266 Paracoccus denitrificans 911 1 no rank 0 246570 319 Paracoccus sp. BM15 1529068 319 0 1 species 355 34003 Paracoccus aminophilus 0 species 1 537 Dinoroseobacter 1 309512 0 1 2 genus 0 species 1 215813 Dinoroseobacter shibae 536 287 299261 1 Tateyamaria 1 0 genus 2 species 1 0 286 299262 Tateyamaria omphalii 539 Thioclava 1 285107 2 genus 0 4 species 1 0 1915078 Thioclava nitratireducens 535 0 genus 1 1649279 383 0 1 species Ruegeria mobilis 379347 383 genus 2 1 0 446 74032 1 Antarctobacter 0 1 species Antarctobacter heliothermus 74033 445 283 119541 0 genus 1 283 Rhodobaca barguzinensis 441209 0 1 species 942 Pelagibaca 360528 1 2 genus 0 5 0 species 1 1250539 Pelagibaca abyssi 937 1097466 594 0 genus 1 594 1335048 Defluviimonas alba 0 species 1 0 1 genus Loktanella 245186 2 Ruegeria 97050 1 1039 3 genus 0 5 0 1 no rank 427 2625375 0 species 1 292414 Ruegeria sp. TM1040 427 0 1 species Ruegeria pomeroyi 89184 607 genus 4 30 0 1 478070 Labrenzia 1963 1 species 0 721 Labrenzia aggregata 187304 0 2 no rank 2648686 1212 0 1 species 582 Labrenzia sp. CP4 1674922 1 species 0 630 Labrenzia sp. VG12 2021862 635 Roseobacter 2433 1 3 genus 0 4 2434 Roseobacter denitrificans 245 0 species 1 0 1 species Roseobacter litoralis 42443 386 genus 2 3 0 349 159345 1 Roseibacterium 346 159346 Roseibacterium elongatum species 1 0 1 367771 Marinovum 602 4 0 genus 2 1 species 0 598 Marinovum algicola 42444 genus 3 6 0 719 92944 1 Ketogulonicigenium Ketogulonicigenium robustum 92947 355 1 species 0 358 Ketogulonicigenium vulgare 92945 1 species 0 0 no rank 2 929 58840 462 2033435 Rhodobacteraceae bacterium QY30 species 1 0 467 1904441 Rhodobacteraceae bacterium 0 species 1 1771 Celeribacter 1 875170 5 genus 0 15 0 species 1 1411902 Celeribacter manganoxidans 466 531 Celeribacter indicus 1208324 1 species 0 338 1397108 Celeribacter marinus species 1 0 0 species 1 1758178 Celeribacter ethanolicus 421 295 Halocynthiibacter 1579315 1 2 genus 0 5 0 species 1 1579316 Halocynthiibacter arcticus 290 292 Roseovarius 74030 1 2 genus 0 3 0 species 1 289 215743 Roseovarius mucosus 4 order 0 10 Magnetococcales 1 1191478 421 0 8 3 family Magnetococcaceae 1 1191479 411 403 Magnetococcus 162171 1 0 6 2 genus 0 1 species Magnetococcus marinus 1124597 397 455 2800059 0 1 order 455 2800061 1 family 0 455 74317 1 genus 0 74318 Maricaulis maris 455 species 1 0 1450 1807140 0 6 class order 6 17 0 225057 1 Acidithiobacillales 1450 1 225058 Acidithiobacillaceae 1433 family 5 4 0 1429 Acidithiobacillus 119977 1 0 3 4 genus 0 1 species Acidithiobacillus ferrooxidans 920 410 species 1 0 345 160808 Acidithiobacillus ferrivorans 0 species 1 33059 Acidithiobacillus caldus 671 1 1236 Gammaproteobacteria 745821 class 891 1157 0 order 105 192 0 1 135622 Alteromonadales 97271 Psychromonadaceae 1 267894 1852 4 family 0 7 1 67572 Psychromonas 1845 genus 3 1 0 2614957 821 no rank 1 0 Psychromonas sp. CNPT3 314282 821 0 1 species species 1 0 357794 Psychromonas ingrahamii 1023 family 9 11 0 6735 1 267889 Colwelliaceae genus 2 2 0 1360 1518149 1 Thalassotalea 0 1 species Thalassotalea crassostreae 1763536 1358 Colwellia 28228 1 5364 6 genus 0 137 no rank 3 0 196834 3428 1 species 0 1168 Colwellia sp. PAMC 20917 1816218 1206 Colwellia sp. MT41 58049 0 1 species 1054 1816219 Colwellia sp. PAMC 21821 species 1 0 0 species 1 750 1967665 Colwellia beringensis 0 species 1 1049 28229 Colwellia psychrerythraea 25121 Alteromonadaceae 72275 1 0 68 30 family 2 genus 0 6 2157 Paraglaciecola 1 1621534 2151 Paraglaciecola psychrophila 326544 0 1 species 1 89404 Glaciecola 1753 genus 3 17 0 684 2618684 no rank 1 0 0 species 1 983545 Glaciecola sp. 4H-3-7+YE-5 684 300231 Glaciecola nitratireducens 1052 0 species 1 1085 Agarivorans 1 261825 0 6 2 genus 1079 Agarivorans gilvus 680279 1 species 0 10 genus 0 172 Alteromonas 1 226 9674 860 589873 Alteromonas australica 0 species 1 0 1 species Alteromonas stellipolaris 233316 1201 1585 Alteromonas mediterranea 314275 0 1 species 799 Alteromonas addita 287094 1 species 0 0 species 1 28108 Alteromonas macleodii 2310 1895 2614992 no rank 3 0 Alteromonas sp. Mac1 1777491 725 0 1 species species 1 0 723 1917158 Alteromonas sp. RW2A1 447 Alteromonas sp. MB-3u-76 2058133 1 species 0 852 715451 Alteromonas naphthalenivorans species 1 0 1 1751872 Lacimicrobium 1863 genus 2 30 0 species 1 0 1526571 Lacimicrobium alkaliphilum 1833 1 2742 Marinobacter 8521 372 0 genus 10 0 species 1 514 330734 Marinobacter psychrophilus 2743 Marinobacter hydrocarbonoclasticus 1358 species 1 0 0 1 species Marinobacter salinus 1874317 1292 species 1 0 1033846 Marinobacter adhaerens 805 Marinobacter salarius 1420917 1150 0 1 species no rank 3 0 2325 83889 Marinobacter sp. BSs20148 490759 466 1 species 0 776 1671721 Marinobacter sp. CP1 0 species 1 species 1 0 1083 1749259 Marinobacter sp. LQ44 705 1420916 Marinobacter similis species 1 0 2426 267893 1 Idiomarinaceae 6 0 family 6 5 genus 0 103 Idiomarina 1 135575 2420 0 no rank 2 2614829 981 609 2055892 Idiomarina sp. X4 0 species 1 372 Idiomarina sp. OT37-5b 2100422 0 1 species 1 species 0 560 Idiomarina piscisalsi 1096243 0 species 1 135577 Idiomarina loihiensis 776 0 2 family 267891 1314 genus 2 5 0 1 58050 Moritella 1314 1 species 0 Moritella viscosa 80854 1309 1020 1 267892 Ferrimonadaceae 17 0 family 3 genus 2 4 0 44011 1 Ferrimonas 1003 44012 Ferrimonas balearica 999 0 species 1 29450 267890 1 Shewanellaceae family 25 171 0 0 539 24 genus 29279 Shewanella 22 1 0 species 1 404011 Shewanella piezotolerans 1391 0 1 species Shewanella japonica 93973 1306 24 Shewanella putrefaciens 745 species 1 0 Shewanella violacea 60217 809 0 1 species 1180 Shewanella oneidensis 70863 1 species 0 species 1 0 891 192073 Shewanella denitrificans 1982 Shewanella pealeana 70864 1 species 0 1 species 0 Shewanella loihica 359303 1563 271097 Shewanella sediminis 1074 0 species 1 196818 6110 6 no rank 0 Shewanella sp. MR-4 60480 1314 0 1 species 1023 351745 Shewanella sp. W3-18-1 0 species 1 Shewanella sp. MR-7 60481 765 0 1 species 2029986 Shewanella sp. WE21 899 species 1 0 0 1 species 1176 Shewanella sp. ANA-3 94122 0 species 1 2059264 Shewanella sp. Pdp11 933 1377 60961 Shewanella woodyi species 1 0 1576 225848 Shewanella psychrophila 0 species 1 0 1 species 1270 Shewanella frigidimarina 56812 1 species 0 Shewanella bicestrii 2018305 1239 Shewanella marisflavi 260364 1163 1 species 0 0 species 1 2159 62322 Shewanella baltica 1 species 0 Shewanella halifaxensis 271098 1711 1194 60478 Shewanella amazonensis 0 species 1 Pseudoalteromonadaceae 1 267888 29161 0 38 25 family 1 53246 Pseudoalteromonas 29123 605 0 genus 24 1 species 0 Pseudoalteromonas phenolica 161398 1041 1155 176102 Pseudoalteromonas agarivorans species 1 0 Pseudoalteromonas rubra 43658 1191 0 1 species 1 species 0 745 Pseudoalteromonas arctica 394751 1 species 0 1420 Pseudoalteromonas nigrifaciens 28109 1 species 0 Pseudoalteromonas piscicida 43662 1113 Pseudoalteromonas issachenkonii 152297 1594 1 species 0 Pseudoalteromonas translucida 166935 1097 0 1 species 0 1 species Pseudoalteromonas piratica 1348114 1349 1 species 0 Pseudoalteromonas atlantica 288 2344 228 Pseudoalteromonas haloplanktis 1413 species 1 0 Pseudoalteromonas aliena 247523 499 1 species 0 0 species 1 1665 314281 Pseudoalteromonas tunicata 0 1 species Pseudoalteromonas luteoviolacea 43657 1675 species 1 0 717 28107 Pseudoalteromonas espejiana 1 species 0 Pseudoalteromonas marina 267375 809 6178 194690 0 5 no rank 1255 Pseudoalteromonas sp. NC201 1514074 1 species 0 0 species 1 1297 283699 Pseudoalteromonas sp. Bsw20308 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1223 0 species 1 Pseudoalteromonas sp. SM9913 234831 1404 0 1 species species 1 0 999 1761891 Pseudoalteromonas sp. 13-15 species 1 0 1213 43659 Pseudoalteromonas tetraodonis 0 1 species Pseudoalteromonas spongiae 298657 1300 1 135623 Vibrionales 69490 order 43 33 0 69457 641 1 Vibrionaceae 240 0 family 42 4 genus 0 85 Aliivibrio 1 511678 5385 1844 80852 Aliivibrio wodanis species 1 0 0 species 1 40269 Aliivibrio salmonicida 1340 2116 Aliivibrio fischeri 668 0 1 species 0 genus 1 2042066 1374 1 species 0 Paraphotobacterium marinum 1755811 1374 7292 1 657 Photobacterium genus 4 25 0 2039 Photobacterium profundum 74109 0 1 species 1295392 Photobacterium gaetbulicola 1790 species 1 0 38293 Photobacterium damselae 3438 0 species 1 Vibrio 1 662 54028 30 genus 0 1428 1266 676 Vibrio fluvialis species 1 0 0 1 species Vibrio scophthalmi 45658 1611 Vibrio vulnificus 672 3443 0 1 species 0 1 species Vibrio tasmaniensis 212663 1068 0 1 species Vibrio mimicus 674 2197 52443 Vibrio tapetis 1720 species 1 0 666 Vibrio cholerae 3021 species 1 0 0 1 species Vibrio furnissii 29494 1522 717610 20318 0 10 species group 669 Vibrio harveyi 1664 species 1 0 0 1 species Vibrio parahaemolyticus 670 2745 0 species 1 663 Vibrio alginolyticus 3642 3163 680 Vibrio campbellii 0 species 1 0 species 1 696485 Vibrio owensii 1594 1 species 0 1563 Vibrio rotiferianus 190895 1 species 0 Vibrio natriegens 691 2509 1246 766224 Vibrio jasicida species 1 0 0 species subgroup 2 2315253 2192 species 1 0 906 150340 Vibrio antiquarius 1286 50719 Vibrio diabolicus 0 species 1 28173 Vibrio nigripulchritudo 1165 0 species 1 1989 1435069 Vibrio tritonius 0 species 1 species 1 0 687 Vibrio gazogenes 1501 1 species 0 Vibrio breoganii 553239 1481 0 1 species 731 Vibrio qinghaiensis 2025808 0 1 species group 1891919 1204 1204 Vibrio tubiashii 29498 0 1 species 2 no rank 0 2614977 2394 1178 Vibrio sp. EJY3 1116375 1 species 0 1216 Vibrio sp. 2521-89 2014742 0 1 species 982 1534743 Vibrio hyugaensis 0 species 1 0 1 species Vibrio coralliilyticus 190893 3668 1319 55601 Vibrio anguillarum species 1 0 1138 Grimontia 1 246861 0 2 2 genus 673 Grimontia hollisae 1136 0 species 1 order 51 172 0 19921 1 135613 Chromatiales 449719 1 Granulosicoccaceae 1965 family 3 9 0 1956 Granulosicoccus 1 437504 0 18 2 genus 1 species 0 1938 Granulosicoccus antarcticus 437505 5758 1 72276 Ectothiorhodospiraceae 61 0 family 17 Halorhodospira 1 85108 552 0 11 2 genus 1 species 0 Halorhodospira halophila 1053 541 2 genus 0 1 375 Acidihalobacter 1765964 1 374 160660 Acidihalobacter prosperus 0 species 1 2 genus 0 5 715 Alkalilimnicola 1 133193 species 1 0 710 351052 Alkalilimnicola ehrlichii 1051 488 0 genus 1 0 1 no rank 2684909 488 0 1 species 488 Ectothiorhodospira sp. BSL-9 1442136 0 2 3 genus Spiribacter 1335745 1 587 species 1 0 147 1335746 Spiribacter salinus 438 1335757 Spiribacter curvatus 0 species 1 20 0 genus 6 2980 1 106633 Thioalkalivibrio Thioalkalivibrio paradoxus 108010 382 0 1 species 1033854 Thioalkalivibrio sulfidiphilus 919 0 species 1 558 2621013 no rank 1 0 1 species 0 558 Thioalkalivibrio sp. K90mix 396595 0 1 species Thioalkalivibrio nitratireducens 186931 650 1 species 0 Thioalkalivibrio versutus 106634 451 family 3 2 0 1020 1 1676141 Wenzhouxiangellaceae 0 13 2 genus 1018 Wenzhouxiangella 1676142 1 1005 1579979 Wenzhouxiangella marina 0 species 1 18 family 0 53 8373 Chromatiaceae 1 1046 82569 1476 1 no rank 0 0 species 1 1476 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 17 2 genus Thiodictyon 1 53392 2126 0 1 species Candidatus Thiodictyon syntrophicum 1166950 2109 1 85072 Allochromatium 864 1 0 genus 2 Allochromatium vinosum 1049 863 0 1 species genus 2 4 0 815 1 85076 Marichromatium 0 1 species Marichromatium purpuratum 37487 811 1217 1 1227 Nitrosococcus genus 4 13 0 species 1 0 133539 Nitrosococcus halophilus 569 species 1 0 473531 Nitrosococcus watsonii 387 0 1 species Nitrosococcus oceani 1229 248 646 156885 1 Thioflavicoccus genus 2 10 0 0 1 species Thioflavicoccus mobilis 80679 636 1 1980513 Candidatus Nitrosoglobus 242 genus 2 4 0 0 species 1 238 1630141 Candidatus Nitrosoglobus terrae genus 2 7 0 13724 1 Thiocystis 934 species 1 0 73141 Thiocystis violascens 927 451214 740 0 no rank 2 740 Thiohalobacter 1273155 1 2 genus 0 17 585455 Thiohalobacter thiocyanaticus 723 species 1 0 1456 Halothiobacillaceae 255526 1 4 family 0 9 0 1 3 genus Halothiobacillus 109262 1 1447 927 Halothiobacillus neapolitanus 794 0 species 1 1 no rank 0 2636392 652 species 1 0 1860122 Halothiobacillus sp. LS2 652 0 1 3 family Woeseiaceae 1738654 1 437 1 1738655 Woeseia 436 3 0 genus 2 1548547 Woeseia oceani 433 species 1 0 34918 Xanthomonadales 135614 1 53 order 0 264 family 14 135 0 5530 1775411 1 Rhodanobacteraceae 1 70411 Frateuria 536 5 0 genus 2 531 Frateuria aurantia 81475 1 species 0 0 genus 1 2233801 397 1 species 0 Xanthomonadales bacterium D13 2021234 397 1 231454 Dyella 1905 41 0 genus 4 683 445710 Dyella thiooxydans species 1 0 1 species 0 Dyella jiangningensis 1379159 476 705 231455 Dyella japonica 0 species 1 1 323413 Dokdonella 854 genus 2 9 0 species 1 0 323415 Dokdonella koreensis 845 5 0 genus 2 1 242605 Luteibacter 593 588 242606 Luteibacter rhizovicinus 0 species 1 Rhodanobacter 1 75309 1110 0 9 2 genus 666685 Rhodanobacter denitrificans 1101 0 species 1 29124 Xanthomonadaceae 32033 1 0 281 38 family 3 genus 0 21 2323 Pseudoxanthomonas 83618 1 1 species 0 1697 Pseudoxanthomonas suwonensis 314722 0 1 species Pseudoxanthomonas spadix 415229 605 897 Xylella 1 2370 2 genus 0 2 0 species 1 2371 Xylella fastidiosa 895 Lysobacter 1 68 3586 5 genus 0 81 1 species 0 Lysobacter antibioticus 84531 1114 Lysobacter enzymogenes 69 904 1 species 0 603 Lysobacter gummosus 262324 0 1 species 1 species 0 Lysobacter capsici 435897 884 0 genus 1 592 83614 592 Luteimonas sp. 100111 2006110 1 species 0 12870 1 338 Xanthomonas 861 0 genus 17 Xanthomonas sacchari 56458 798 1 species 0 1 species 0 Xanthomonas euvesicatoria 456327 337 Xanthomonas translucens 343 1465 1 species 0 0 species 1 653 442694 Xanthomonas perforans 48664 Xanthomonas fragariae 459 species 1 0 359 56459 Xanthomonas vasicola species 1 0 1984 643453 species group 2 0 346 Xanthomonas citri 1435 species 1 0 366648 Xanthomonas fuscans 549 0 species 1 Xanthomonas alfalfae 366650 287 1 species 0 56454 Xanthomonas hortorum 651 0 species 1 Xanthomonas campestris 339 2123 1 species 0 0 species 1 347 Xanthomonas oryzae 828 Xanthomonas vesicatoria 56460 461 1 species 0 species 1 0 385 53413 Xanthomonas axonopodis 579 1985254 Xanthomonas phaseoli species 1 0 species 1 0 29447 Xanthomonas albilineans 640 343 0 genus 9 40323 1 Stenotrophomonas 8575 Stenotrophomonas nitritireducens 83617 534 1 species 0 196198 1968 0 4 no rank 1827305 Stenotrophomonas sp. MYb57 487 species 1 0 species 1 0 475 1904944 Stenotrophomonas sp. LM091 1 species 0 Stenotrophomonas sp. WZN-1 2005046 523 483 Stenotrophomonas sp. KCTC 12332 1793721 0 1 species 3708 995085 species group 1 0 0 species 1 3708 40324 Stenotrophomonas maltophilia 767 216778 Stenotrophomonas rhizophila 0 species 1 1 species 0 Stenotrophomonas acidaminiphila 128780 1255 1 118969 Legionellales 9738 3 0 order 20 0 24 14 family 8990 Legionellaceae 444 1 Legionella 445 1 8536 0 16 12 genus 0 species 1 535 450 Legionella longbeachae 1 species 0 465 Legionella lansingensis 45067 3575 446 Legionella pneumophila species 1 0 Legionella sainthelensi 28087 767 0 1 species 0 species 1 1867846 Legionella clemsonensis 556 species 1 0 96230 Legionella fallonii 535 1 species 0 251 Legionella oakridgensis 29423 species 1 0 2005262 Legionella endosymbiont of Polyplax serrata 170 species 1 0 544 452 Legionella spiritensis 563 449 Legionella hackeliae species 1 0 1 species 0 Legionella waltersii 66969 559 430 465 1 genus 0 430 Tatlockia micdadei 451 1 species 0 0 14 5 family 745 Coxiellaceae 118968 1 Coxiella 776 1 531 3 genus 0 1 Coxiella burnetii 777 343 1 species 0 2676648 187 0 no rank 1 187 Coxiella endosymbiont of Amblyomma americanum 325775 0 1 species 134284 200 0 1 no rank 1592897 Coxiella-like endosymbiont 200 species 1 0 118884 5240 13 no rank 0 1 1608298 Thiolapillus 1005 3 0 genus 2 species 1 0 1076588 Thiolapillus brandeum 1002 0 clade 4 1560 32036 841 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 1 species 0 6 0 genus 2 312 1 1541743 Candidatus Ruthia 306 386487 Candidatus Ruthia magnifica species 1 0 0 1 species 407 Calyptogena okutanii thioautotrophic gill symbiont 410330 948 198346 clade 1 0 948 186490 Candidatus Baumannia cicadellinicola species 1 0 655184 1 Candidatus Thioglobus 743 1 0 genus 3 0 species 1 1705394 Candidatus Thioglobus autotrophicus 365 377 1427364 Candidatus Thioglobus singularis 0 species 1 0 1 genus 477 1524249 Pseudohongiella spirulinae 1249552 477 0 1 species 507 1 349742 Sedimenticola genus 2 2 0 Sedimenticola thiotaurini 1543721 505 0 1 species 4 order 0 7 690 Immundisolibacterales 1 1934945 12 0 family 3 1 1934946 Immundisolibacteraceae 683 2 genus 0 3 671 Immundisolibacter 1 1934947 668 1810504 Immundisolibacter cernigliae 0 species 1 0 77 29 order Aeromonadales 135624 1 33213 28 family 0 315 Aeromonadaceae 84642 1 33136 3473 Oceanisphaera 1 225143 0 1 3 genus 1903694 Oceanisphaera sp. AMac2203 845 0 species 1 2627 Oceanisphaera profunda 1416627 0 1 species 2 genus 0 15 Oceanimonas 1 129577 2269 no rank 1 0 2254 2636315 511062 Oceanimonas sp. GK1 2254 species 1 0 Aeromonas 1 642 20478 0 1287 18 genus Aeromonas salmonicida 645 1716 1 species 0 759 948519 Aeromonas rivipollensis 0 species 1 Aeromonas dhakensis 196024 714 1 species 0 1 species 0 631 Aeromonas aquatica 558964 0 1 species Aeromonas caviae 648 449 no rank 8 0 6096 257493 1 species 0 503 Aeromonas sp. ASNIH7 1920107 1636606 Aeromonas sp. ASNIH1 595 species 1 0 0 species 1 1636608 Aeromonas sp. ASNIH3 806 Aeromonas sp. CU5 2033033 1232 1 species 0 867 Aeromonas sp. ASNIH4 1636609 1 species 0 799 1758179 Aeromonas sp. ASNIH5 species 1 0 1636607 Aeromonas sp. ASNIH2 500 species 1 0 species 1 0 2033032 Aeromonas sp. CA23 794 2274 Aeromonas schubertii 652 1 species 0 0 1 species 759 Aeromonas media 651 0 species 1 3491 644 Aeromonas hydrophila Aeromonas veronii 654 2302 1 species 0 4243 1 43947 Tolumonas 34 0 genus 2 1 species 0 Tolumonas auensis 43948 4209 genus 2 9 0 1 347533 Zobellella 2358 2349 347534 Zobellella denitrificans species 1 0 order 246 827 0 231854 1 91347 Enterobacterales 14454 Pectobacteriaceae 1903410 1 20 family 0 33 Dickeya 1 204037 5356 0 121 6 genus 1057 Dickeya solani 1089444 0 1 species Dickeya dianthicola 204039 773 1 species 0 762 Dickeya fangzhongdai 1778540 0 1 species 204042 Dickeya zeae 1831 species 1 0 812 Dickeya dadantii 204038 0 1 species 6332 1 122277 Pectobacterium genus 6 104 0 species 1 0 865 1905730 Pectobacterium parmentieri 1 species 0 Pectobacterium carotovorum 554 2357 29471 Pectobacterium atrosepticum 711 0 species 1 1026 55208 Pectobacterium wasabiae 0 species 1 species 1 0 1269 2042057 Pectobacterium polaris 1983 84565 1 Sodalis genus 5 41 0 0 species 1 692 1239307 Sodalis praecaptivus species 1 0 63612 Sodalis glossinidius 397 1 species 0 Sodalis endosymbiont of Henestaris halophilus 1929246 474 379 1486991 Candidatus Sodalis pierantonius species 1 0 71655 1 Brenneria 750 genus 2 19 0 1 species 0 Brenneria goodwinii 1109412 731 1788 451511 2 no rank 0 0 53 2 genus 1788 Plesiomonas 702 1 1 species 0 Plesiomonas shigelloides 703 1735 7 0 family 13 1 1903412 Hafniaceae 9763 82982 595 1 genus 0 595 Obesumbacterium proteus 82983 0 1 species genus 3 102 0 3127 568 1 Hafnia species 1 0 2038 569 Hafnia alvei 1 no rank 0 2621980 987 987 1848580 Hafnia sp. CBA7124 species 1 0 Edwardsiella 635 1 6034 0 409 8 genus 0 species 1 1263550 Edwardsiella piscicida 645 0 species 1 1325 636 Edwardsiella tarda Edwardsiella ictaluri 67780 442 1 species 0 0 no rank 2 2676541 1383 Edwardsiella sp. LADL05-105 1650654 675 1 species 0 0 1 species 708 Edwardsiella sp. EA181011 1578828 0 1 species 669 Edwardsiella anguillarum 1821960 0 1 species Edwardsiella hoshinae 93378 1161 3 family 0 2 Budviciaceae 1903416 1 916 0 3 2 genus 914 Pragia 82984 1 Pragia fontium 82985 911 1 species 0 118 family 0 1166 Enterobacteriaceae 1 543 125141 7251 191675 no rank 17 0 7251 84563 0 clade 17 genus 1 0 300 1906660 0 species 1 300 1778264 Candidatus Mikella endobia 335 1906659 genus 1 0 0 1 species 335 Candidatus Hoaglandella endobia 1778263 442 199891 0 clade 1 1 species 0 secondary endosymbiont of Trabutina mannipara 1835721 442 0 1 genus 471 1906657 471 1778262 Candidatus Doolittlea endobia 0 species 1 1906661 605 genus 1 0 1 species 0 605 Candidatus Gullanella endobia 1070130 genus 2 7 0 1682492 1 Candidatus Tachikawaea 619 0 species 1 612 1410383 Candidatus Tachikawaea gelatinosa 84564 3228 7 clade 0 7 genus 0 34 Candidatus Blochmannia 203804 1 3228 219 251535 Candidatus Blochmannia vafer species 1 0 426 Candidatus Blochmannia floridanus 203907 1 species 0 221 251542 Candidatus Blochmannia chromaiodes 0 species 1 2143 711328 0 2 no rank 957 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 1 0 0 1 species 1186 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 0 species 1 101534 Candidatus Blochmannia pennsylvanicus 185 0 3 clade 146507 1251 secondary endosymbiont of Ctenarytaina eucalypti 1199245 334 1 species 0 secondary endosymbiont of Heteropsylla cubana 134287 392 1 species 0 genus 1 0 525 568987 1 species 0 525 Candidatus Hamiltonella defensa 138072 67 0 genus 4 2701 83654 1 Leclercia species 1 0 83655 Leclercia adecarboxylata 707 1927 2627398 no rank 2 0 species 1 0 1171 1920114 Leclercia sp. LSNIH1 1920116 Leclercia sp. LSNIH3 756 0 species 1 158483 1 Cedecea 2379 genus 2 3 0 158822 Cedecea neteri 2376 0 species 1 425 0 genus 14 1 544 Citrobacter 20204 1546 35703 Citrobacter amalonaticus 0 species 1 2644389 1047 no rank 2 0 species 1 0 1702170 Citrobacter sp. FDAARGOS_156 543 species 1 0 504 1920110 Citrobacter sp. CFNIH10 764 67825 Citrobacter rodentium species 1 0 0 1 species 700 Citrobacter farmeri 67824 545 Citrobacter koseri 728 species 1 0 1344959 14994 7 species group 0 0 1 species 1019 Citrobacter freundii complex sp. CFNIH4 2077148 1508 67827 Citrobacter werkmanii species 1 0 Citrobacter freundii complex sp. CFNIH3 2077147 773 0 1 species species 1 0 2066049 Citrobacter freundii complex sp. CFNIH2 534 2832 Citrobacter freundii complex sp. CFNIH9 2077149 1 species 0 546 Citrobacter freundii 6998 species 1 0 1330 Citrobacter braakii 57706 1 species 0 0 1108 22 genus Enterobacter 547 1 24166 no rank 9 0 2608935 5746 366 Enterobacter sp. HK169 1868135 1 species 0 1977566 Enterobacter sp. Crenshaw 429 0 species 1 Enterobacter sp. SA187 1914861 537 0 1 species 1497 1827481 Enterobacter sp. ODB01 species 1 0 Enterobacter sp. CRENT-193 2051905 633 1 species 0 321 Enterobacter sp. E20 1560339 1 species 0 Enterobacter sp. 638 399742 690 1 species 0 Enterobacter sp. FY-07 1692238 538 0 1 species 735 1166130 Enterobacter sp. R4-368 species 1 0 354276 17312 species group 12 0 1176 299767 Enterobacter ludwigii species 1 0 3 no rank 0 1972 2757714 1915310 Enterobacter cloacae complex sp. ECNIH7 482 0 species 1 species 1 0 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1120 Enterobacter cloacae complex bacterium 2027919 370 1 species 0 0 species 1 1770 61645 Enterobacter asburiae 0 species 1 550 Enterobacter cloacae 7057 158836 1 Enterobacter hormaechei 3370 species 3 1937 0 1296536 Enterobacter xiangfangensis 568 subspecies 1 0 Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 865 1 subspecies 0 Enterobacter kobei 208224 1270 1 species 0 0 species 1 382 69218 Enterobacter cancerogenus 315 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 0 4260 Cronobacter 413496 1 0 75 8 genus 468 Cronobacter universalis 535744 1 species 0 413501 Cronobacter muytjensii 791 0 species 1 562 Cronobacter turicensis 413502 1 species 0 1163710 Cronobacter condimenti 547 species 1 0 384 Cronobacter malonaticus 413503 0 1 species 808 Cronobacter sakazakii 28141 1 species 0 species 1 0 413497 Cronobacter dublinensis 625 561 1 Escherichia 14349 genus 5 212 0 0 species 1 208962 Escherichia albertii 1075 0 1 species Escherichia fergusonii 564 884 Escherichia marmotae 1499973 613 1 species 0 0 1 species Escherichia coli 562 11565 1048757 245 1 genus 0 245 1048758 Candidatus Moranella endobia species 1 0 0 genus 1 401618 164 Candidatus Riesia pediculicola 401619 164 1 species 0 6513 Salmonella 590 1 0 10 3 genus 0 species 1 592 54736 Salmonella bongori 5911 28901 Salmonella enterica 0 species 1 0 19 3 genus Raoultella 160674 1 7004 54291 Raoultella ornithinolytica 4184 0 species 1 0 1 species Raoultella planticola 575 2801 272 Candidatus Ishikawaella 1 409304 0 4 2 genus 0 species 1 168169 Candidatus Ishikawaella capsulata 268 20 0 genus 4 1330545 1 Lelliottia 2871 Lelliottia amnigena 61646 1663 0 1 species 1907578 Lelliottia jeotgali 566 species 1 0 0 1 species 622 Lelliottia nimipressuralis 69220 3960 36866 no rank 5 0 1 species 0 926 Enterobacteriaceae bacterium ENNIH3 1920128 1 species 0 Plautia stali symbiont 891974 667 816 Enterobacteriaceae bacterium strain FGI 57 693444 1 species 0 1 species 0 Enterobacteriaceae bacterium ENNIH2 1920109 690 Enterobacteriaceae bacterium ENNIH1 2066051 861 1 species 0 Kosakonia 1 1330547 2802 0 14 5 genus 698 Kosakonia sacchari 1158459 1 species 0 species 1 0 634 497725 Kosakonia oryzae 0 species 1 667 208223 Kosakonia cowanii 789 283686 Kosakonia radicincitans 0 species 1 2 genus 0 1 806 Kluyvera 1 579 61648 Kluyvera intermedia 805 species 1 0 2 0 genus 3 1330546 1 Pluralibacter 2087 901 1334193 [Enterobacter] lignolyticus species 1 0 species 1 0 1184 61647 Pluralibacter gergoviae 0 12 2 genus Shimwellia 1335483 1 538 Shimwellia blattae 563 526 0 1 species 19377 Klebsiella 570 1 0 455 10 genus 2026240 Klebsiella quasivariicola 1039 0 species 1 2719 Klebsiella michiganensis 1134687 0 1 species 1463165 Klebsiella quasipneumoniae 956 species 1 0 Klebsiella variicola 244366 1533 1 species 0 species 1 0 1174 548 Klebsiella aerogenes 573 Klebsiella pneumoniae 6067 species 1 0 2608929 1599 0 no rank 2 species 1 0 812 1905288 Klebsiella sp. LTGPAF-6F 787 Klebsiella sp. M5al 1934254 1 species 0 1 species 0 Klebsiella oxytoca 571 3835 1 620 Shigella 2026 189 0 genus 4 0 1 species 556 Shigella flexneri 623 2629414 555 0 no rank 1 1 species 0 Shigella sp. PAMC 28760 1813821 555 0 species 1 726 622 Shigella dysenteriae 39 family 0 81 Yersiniaceae 1903411 1 33539 genus 13 472 0 13536 629 1 Yersinia 0 no rank 1 685 2653513 685 Yersinia sp. FDAARGOS_228 1839800 0 1 species species 1 0 29485 Yersinia rohdei 586 2081 29484 Yersinia frederiksenii species 1 0 Yersinia aldovae 29483 560 0 1 species 3 species group 0 1649845 2685 977 632 Yersinia pestis 0 species 1 1 species 0 588 Yersinia similis 367190 1120 633 Yersinia pseudotuberculosis species 1 0 0 1 species 1031 Yersinia ruckeri 29486 693 631 Yersinia intermedia species 1 0 0 species 1 263819 Yersinia aleksiciae 568 0 1 species Yersinia enterocolitica 630 3515 28152 Yersinia kristensenii 660 species 1 0 1 929812 Gibbsiella 736 genus 2 3 0 1 species 0 Gibbsiella quercinecans 929813 733 genus 16 828 0 1 613 Serratia 15426 3638 Serratia marcescens 615 1 species 0 0 1 species Serratia plymuthica 82996 1244 8 no rank 0 4668 2647522 791 2033438 Serratia sp. MYb239 0 species 1 Serratia sp. AS12 768490 549 0 1 species 0 species 1 535 671990 Serratia sp. FGI94 0 1 species 653 Serratia sp. FS14 1327989 536 Serratia sp. SCBI 488142 0 1 species 0 1 species Serratia sp. SSNIH1 1758196 480 104623 Serratia sp. ATCC 39006 575 0 species 1 species 1 0 768493 Serratia sp. AS13 549 0 1 species 681 Serratia ficaria 61651 47917 Serratia fonticola 2196 0 species 1 species 1 0 61652 Serratia rubidaea 785 1 species 0 Serratia liquefaciens 614 746 1 species 0 640 Serratia proteamaculans 28151 genus 2 19 0 609 1745211 1 Chania species 1 0 1639108 Chania multitudinisentens 590 0 38 4 genus 3136 Rahnella 1 34037 2131 2635087 0 2 no rank 910 741091 Rahnella sp. Y9602 0 species 1 0 1 species Rouxiella sp. ERMR1:05 1805933 1221 34038 Rahnella aquatilis 967 0 species 1 1 genus 0 15 Rouxiella 1565532 97 0 family 28 25268 1 1903409 Erwiniaceae 0 2 genus 2100764 1261 703 Pantoea gaviniae 665914 1 species 0 1 species 0 558 Pantoea calida 665913 Erwinia 1 551 5676 8 genus 0 241 0 species 1 182337 Erwinia billingiae 993 0 1 species Erwinia tasmaniensis 338565 474 1129 552 Erwinia amylovora 0 species 1 1 no rank 0 2622719 796 796 Erwinia sp. Ejp617 215689 0 1 species Erwinia gerundensis 1619313 832 0 1 species 720 Erwinia pyrifoliae 79967 1 species 0 491 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 species 1 12357 Pantoea 53335 1 11 genus 0 391 0 3 no rank 2561 2630326 0 species 1 592316 Pantoea sp. At-9b 617 1004 Pantoea sp. PSNIH2 1484157 0 1 species species 1 0 940 1484158 Pantoea sp. PSNIH1 0 species 1 1345 553 Pantoea ananatis 694 1891675 Pantoea alhagi species 1 0 species 1 0 1076550 Pantoea rwandensis 1327 1 species group 0 1439 1654067 Pantoea agglomerans 549 1439 1 species 0 1912 Candidatus Pantoea carbekii 1235990 0 1 species 66269 Pantoea stewartii 811 0 species 1 species 1 0 470934 Pantoea vagans 1877 2 genus 0 1 3411 Buchnera 32199 1 Buchnera aphidicola 9 3410 1 species 0 1323 82986 1 Tatumella genus 2 45 0 Tatumella citrea 53336 1278 0 1 species 0 29 2 genus 1143 Wigglesworthia 1 51228 51229 Wigglesworthia glossinidia 1114 species 1 0 20158 1903414 1 Morganellaceae 40 0 family 22 32 0 genus 3 4099 1 583 Proteus 2418 Proteus mirabilis 584 1 species 0 0 1 species 1649 Proteus vulgaris 585 4839 626 1 Xenorhabdus 26 0 genus 6 0 species 1 351679 Xenorhabdus hominickii 1098 Xenorhabdus doucetiae 351671 401 0 1 species 1 species 0 Xenorhabdus bovienii 40576 1417 628 Xenorhabdus nematophila 967 0 species 1 930 40577 Xenorhabdus poinarii species 1 0 Providencia 586 1 3701 4 genus 0 33 species 1 0 587 Providencia rettgeri 1120 588 Providencia stuartii 1118 0 species 1 0 1 species Providencia alcalifaciens 126385 1430 1595 Morganella 581 1 2 genus 0 17 0 1 species 1578 Morganella morganii 582 genus 2 28 0 1 637 Arsenophonus 462 634113 Arsenophonus symbiont of Lipoptena fortisetosa 434 species 1 0 4 genus 0 54 5422 Photorhabdus 29487 1 1 species 0 1043 Photorhabdus luminescens 29488 Photorhabdus temperata 574560 2561 1 species 0 1764 Photorhabdus asymbiotica 291112 0 1 species 0 80 36 order Thiotrichales 72273 1 27877 1777 1 135617 Thiotrichaceae family 5 4 0 Thioploca 1 40751 235 0 2 2 genus 0 1 species Thioploca ingrica 40754 233 0 18 2 genus Beggiatoa 1021 1 1538 1 species 0 1520 Beggiatoa leptomitoformis 288004 0 11 15 family Piscirickettsiaceae 135616 1 10396 2 genus 0 26 1051 Piscirickettsia 1237 1 Piscirickettsia salmonis 1238 1025 1 species 0 genus 4 21 0 1 34067 Cycloclasticus 2198 443 Cycloclasticus zancles 1329899 1 species 0 0 2 no rank 2621467 1734 1343 385025 Cycloclasticus sp. P1 species 1 0 1 species 0 Cycloclasticus sp. PY97N 728003 391 0 3 3 genus 1247 Thiomicrospira 933 1 586 147268 Thiomicrospira cyclica 0 species 1 0 1 species Thiomicrospira aerophila 92245 658 616 Hydrogenovibrio 1 28884 2 genus 0 7 Hydrogenovibrio crunogenus 39765 609 1 species 0 3 genus 0 44 Methylophaga 40222 1 5273 Methylophaga frappieri 754477 3703 0 1 species 754476 Methylophaga nitratireducenticrescens 1526 species 1 0 Francisellaceae 1 34064 15624 15 family 0 18 Allofrancisella 1 1869285 903 0 1 2 genus 902 594679 Allofrancisella guangzhouensis species 1 0 228 0 genus 12 14703 262 1 Francisella species 1 0 2653 263 Francisella tularensis 28110 Francisella philomiragia 2470 0 species 1 954 Francisella persica 820 species 1 0 0 1 species 1661 Francisella sp. CA97-1460 1542390 783 573569 Francisella sp. TX077308 species 1 0 549298 Francisella halioticida 1166 0 species 1 1 species 0 Francisella noatunensis 657445 1508 1634 2610885 2 no rank 0 Francisella sp. MA067296 475375 756 0 1 species 1547445 Francisella sp. FSC1006 878 species 1 0 0 1 species Francisella hispaniensis 622488 766 0 1 species 1014 Francisella sp. TX077310 573570 519 1 1775403 Nevskiales 10 0 order 4 Sinobacteraceae 568386 3 0 1 family 2689614 506 2 family 0 Steroidobacter 469322 1 506 0 4 2 genus species 1 0 465721 Steroidobacter denitrificans 502 1240482 2271 order 5 0 2271 Orbaceae 1 1240483 0 13 5 family 2 genus 0 1 1332 Gilliamella 1193503 1 1331 1196095 Gilliamella apicola 0 species 1 0 3 2 genus Frischella 1335631 1 926 Frischella perrara 1267021 923 0 1 species 135619 1 Oceanospirillales 33983 order 69 153 0 1920240 1 Kangiellaceae 2847 14 0 family 6 1 261963 Kangiella 2833 genus 5 30 0 581 Kangiella profundi 1561924 0 1 species 831 914150 Kangiella geojedonensis 0 species 1 1 species 0 1004 Kangiella sediminilitoris 1144748 0 1 species Kangiella koreensis 261964 387 Hahellaceae 1 224379 1389 0 1 3 family 1388 Hahella 1 158481 2 genus 0 6 1382 158327 Hahella chejuensis 0 species 1 15239 1 28256 Halomonadaceae family 31 161 0 518 404432 1 Salinicola 2 0 genus 2 0 1 species Salinicola tamaricis 1771309 516 Chromohalobacter 1 42054 496 2 genus 0 7 489 Chromohalobacter salexigens 158080 0 1 species 397 114403 0 no rank 4 1 genus 0 114185 13 Candidatus Carsonella ruddii 114186 13 0 1 species 115 1495768 1 genus 0 Candidatus Evansia muelleri 1495769 115 0 1 species 269 Candidatus Portiera 235572 1 0 7 2 genus species 1 0 91844 Candidatus Portiera aleyrodidarum 262 9 0 genus 2 591 376488 1 Halotalea species 1 0 376489 Halotalea alkalilenta 582 Kushneria 1 504090 2397 3 genus 0 6 1075 698828 Kushneria konosiri species 1 0 Kushneria marisflavi 157779 1316 0 1 species 336 0 genus 15 9245 1 2745 Halomonas 0 species 1 861 475662 Halomonas beimenensis 0 1 species Halomonas hydrothermalis 115561 585 0 1 species Halomonas chromatireducens 507626 531 0 1 species 507 Halomonas huangheensis 1178482 391 213554 Halomonas campaniensis 0 species 1 Halomonas aestuarii 1897729 620 1 species 0 no rank 8 0 5414 2609666 2136172 Halomonas sp. SF2003 1723 0 species 1 1 species 0 866 Halomonas sp. KO116 1504981 458 Halomonas sp. R57-5 1610576 0 1 species 674 Halomonas sp. 1513 1883416 0 1 species species 1 0 1962264 Halomonas sp. 'Soap Lake #7' 516 1 species 0 Halomonas sp. GFAJ-1 1118153 433 1949203 Halomonas sp. 'Soap Lake #6' 516 species 1 0 228 Halomonas sp. GT 1971364 0 1 species 0 1 2 genus Cobetia 204286 1 1434 28258 Cobetia marina 1433 species 1 0 family 2 0 191033 665 2 genus 0 9 665 Oleiphilus 141450 1 656 141451 Oleiphilus messinensis species 1 0 6 0 family 5 1203 255527 1 Saccharospirillaceae genus 2 3 0 257 1 230494 Reinekea 254 Reinekea forsetii 1336806 0 1 species 1 1445504 Gynuella 940 genus 2 2 0 938 1445505 Gynuella sunshinyii 0 species 1 20 0 family 9 224372 1 Alcanivoracaceae 3540 2 genus 0 8 756 Ketobacter 1 2025617 1 species 0 748 Ketobacter alkanivorans 1917421 0 50 6 genus Alcanivorax 1 59753 2764 692 1306787 Alcanivorax pacificus species 1 0 821 1094342 Alcanivorax xenomutans species 1 0 2638842 366 1 no rank 0 366 Alcanivorax sp. NBRC 101098 1113728 0 1 species 0 1 species Alcanivorax borkumensis 59754 272 285091 Alcanivorax dieselolei 563 species 1 0 0 32 12 family Oceanospirillaceae 1 135620 8947 2610 187492 1 Thalassolituus genus 2 1 0 0 1 species 2609 Thalassolituus oleivorans 187493 2 genus 0 1 Bacterioplanes 1 1537406 1804 1803 Bacterioplanes sanyensis 1249553 0 1 species 2948 1 28253 Marinomonas 13 0 genus 4 1037 936476 Marinomonas posidonica species 1 0 924 Marinomonas mediterranea 119864 1 species 0 no rank 1 0 974 196814 1 species 0 974 Marinomonas sp. MWYL1 400668 1004 Marinobacterium 48075 1 0 22 2 genus 1821621 Marinobacterium aestuarii 982 0 species 1 0 1 genus 549 188907 549 Oleispira antarctica 188908 1 species 0 4015 Methylococcales 1 135618 0 17 13 order 3998 1 403 Methylococcaceae family 12 128 0 genus 2 30 0 1 413 Methylococcus 655 414 Methylococcus capsulatus 625 0 species 1 981 762296 1 Methylovulum genus 2 3 0 978 1704499 Methylovulum psychrotolerans species 1 0 336 Methylomicrobium 1 39773 0 1 2 genus 0 1 species Methylomicrobium alcaliphilum 271065 335 1 416 Methylomonas 1898 129 0 genus 5 1 species 0 Methylomonas methanica 421 350 0 1 species Methylomonas koyamae 702114 519 0 1 no rank 438 2608980 1 species 0 438 Methylomonas sp. DH-1 1727196 462 1538553 Methylomonas denitrificans 0 species 1 191 1 135615 Cardiobacteriales 2 0 order 3 0 1 2 family Cardiobacteriaceae 1 868 189 1 genus 0 188 869 Dichelobacter nodosus 870 188 1 species 0 39629 Pasteurellales 1 135625 32 order 0 51 family 31 364 0 39578 1 712 Pasteurellaceae 31 0 genus 4 4120 75984 1 Mannheimia Mannheimia varigena 85404 1801 0 1 species 2645054 836 no rank 1 0 0 species 1 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 836 75985 Mannheimia haemolytica 1452 species 1 0 0 1 2 genus Basfia 1 697331 930 929 [Mannheimia] succiniciproducens 157673 1 species 0 2278 Glaesserella 2094023 1 0 3 2 genus 0 1 species Glaesserella parasuis 738 2275 13191 Haemophilus 1 724 6 genus 0 189 species 1 0 4773 729 Haemophilus parainfluenzae 0 1 species 993 [Haemophilus] ducreyi 730 4275 Haemophilus influenzae 727 0 1 species species 1 0 249188 Haemophilus pittmaniae 1395 1566 2609962 0 no rank 1 0 species 1 1566 712310 Haemophilus sp. oral taxon 036 38 0 genus 3 3618 416916 1 Aggregatibacter 714 Aggregatibacter actinomycetemcomitans 2006 0 species 1 732 Aggregatibacter aphrophilus 1574 species 1 0 214906 1031 1 genus 0 species 1 0 731 Histophilus somni 1031 2 genus 0 3 2263 Gallibacterium 155493 1 0 species 1 2260 750 Gallibacterium anatis Bibersteinia 1 476528 2421 0 13 2 genus 2408 47735 Bibersteinia trehalosi species 1 0 genus 5 74 0 4701 713 1 Actinobacillus 1 species 0 Actinobacillus equuli 718 1302 1104 715 Actinobacillus pleuropneumoniae 0 species 1 species 1 0 781 67854 Actinobacillus succinogenes 1440 Actinobacillus suis 716 1 species 0 4661 Pasteurella 1 745 0 305 3 genus 0 species 1 1156 754 Pasteurella dagmatis 3200 747 Pasteurella multocida species 1 0 129 order 0 349 119601 Pseudomonadales 1 72274 49 0 family 42 1 468 Moraxellaceae 35907 0 245 11 genus Psychrobacter 1 497 6600 1 species 0 644 Psychrobacter alimentarius 261164 196806 3620 6 no rank 0 571800 Psychrobacter sp. G 922 species 1 0 1699622 Psychrobacter sp. P2G3 413 0 species 1 0 species 1 245 1028416 Psychrobacter sp. DAB_AL43B 1 species 0 Psychrobacter sp. AntiMn-1 1720344 743 species 1 0 792 349106 Psychrobacter sp. PRwf-1 Psychrobacter sp. P11G5 1699624 505 1 species 0 0 species 1 901 45610 Psychrobacter urativorans 587 Psychrobacter arcticus 334543 1 species 0 1 species 0 Psychrobacter cryohalolentis 330922 603 genus 5 37 0 1 475 Moraxella 3954 0 1 species 760 Moraxella catarrhalis 480 Moraxella ovis 29433 354 0 1 species 0 1 species Moraxella bovoculi 386891 967 1836 34062 Moraxella osloensis species 1 0 25 genus 0 508 25304 Acinetobacter 469 1 species 1 0 1004 108981 Acinetobacter schindleri 0 1 species Acinetobacter haemolyticus 29430 606 0 1 species Acinetobacter soli 487316 526 762 40214 Acinetobacter johnsonii species 1 0 0 1 species Acinetobacter radioresistens 40216 546 1324350 Acinetobacter equi 1012 species 1 0 907 1148157 Acinetobacter oleivorans 0 species 1 species 1 0 1321 40215 Acinetobacter junii 196816 5495 no rank 7 0 species 1 0 2079596 Acinetobacter sp. SWBY1 468 Acinetobacter sp. TTH0-4 1646498 1034 1 species 0 1040 Acinetobacter sp. LoGeW2-3 1808001 1 species 0 species 1 0 1407071 Acinetobacter sp. TGL-Y2 873 1 species 0 791 Acinetobacter sp. NCu2D-2 1608473 1 species 0 Acinetobacter sp. ACNIH1 1636603 949 0 species 1 1758189 Acinetobacter sp. ACNIH2 340 585 Acinetobacter larvae 1789224 1 species 0 623 202950 0 species 1 1 strain 0 623 Acinetobacter sp. ADP1 62977 species 1 0 996 106648 Acinetobacter bereziniae 572 756892 Acinetobacter indicus 0 species 1 5 species group 0 909768 9841 0 1 species 3337 Acinetobacter baumannii 470 676 Acinetobacter lactucae 1785128 0 1 species 0 1 species 2045 Acinetobacter calcoaceticus 471 1037 106654 Acinetobacter nosocomialis 0 species 1 2746 Acinetobacter pittii 48296 0 1 species 83345 Pseudomonadaceae 135621 1 0 472 86 family 3 subfamily 0 351 1941 0 19 3 genus 1941 Azotobacter 352 1 0 species 1 697 354 Azotobacter vinelandii 0 1 species Azotobacter chroococcum 353 1225 1 286 Pseudomonas 80014 2869 0 genus 80 0 2 species group 136842 4436 1059 296 Pseudomonas fragi 0 species 1 3377 587753 Pseudomonas chlororaphis species 1 0 136841 9146 0 6 species group species subgroup 1 0 1081 1232139 Pseudomonas furukawaii 1149133 1081 1 species 0 53412 Pseudomonas resinovorans 659 0 species 1 43263 Pseudomonas alcaligenes 622 species 1 0 1 species 0 3147 Pseudomonas aeruginosa 287 Pseudomonas citronellolis 53408 1216 0 1 species 2421 300 Pseudomonas mendocina species 1 0 1 species 0 454 Pseudomonas entomophila 312306 0 species 1 836 237610 Pseudomonas psychrotolerans 0 species 1 1788301 Pseudomonas versuta 438 species 1 0 930166 Pseudomonas brassicacearum 1075 383 Pseudomonas rhizosphaerae 216142 0 1 species 1583341 Pseudomonas cerasi 385 species 1 0 136846 4310 0 species group 2 74829 Pseudomonas balearica 515 0 species 1 578833 3795 species subgroup 1 0 species 1 0 3795 316 Pseudomonas stutzeri species 1 0 457 237609 Pseudomonas alkylphenolica 697 Pseudomonas knackmussii 65741 0 1 species Pseudomonas antarctica 219572 342 1 species 0 196821 16369 no rank 30 0 species 1 0 392 1500686 Pseudomonas sp. Os17 Pseudomonas sp. URMO17WK12:I11 1283291 916 0 1 species species 1 0 2049589 Pseudomonas sp. HLS-6 734 species 1 0 748 2083054 Pseudomonas sp. LG1D9 0 species 1 1898684 Pseudomonas sp. LPH1 718 Pseudomonas sp. JY-Q 1338689 510 1 species 0 1 species 0 Pseudomonas sp. VLB120 69328 664 0 species 1 1856685 Pseudomonas sp. TCU-HL1 837 1207075 Pseudomonas sp. UW4 468 0 species 1 1 species 0 384 Pseudomonas sp. NC02 2067572 2018067 Pseudomonas sp. FDAARGOS_380 483 0 species 1 Pseudomonas sp. S-6-2 1931241 624 1 species 0 456 1649877 Pseudomonas sp. CCOS 191 0 species 1 385 2083053 Pseudomonas sp. SWI44 0 species 1 1 species 0 610 Pseudomonas sp. GR 6-02 1659194 2083051 Pseudomonas sp. SWI6 390 species 1 0 365 1415630 Pseudomonas sp. TKP species 1 0 1 species 0 512 Pseudomonas sp. MRSN12121 1611770 species 1 0 1028989 Pseudomonas sp. StFLB209 836 Pseudomonas sp. MYb193 1827300 317 1 species 0 0 species 1 2083052 Pseudomonas sp. SWI36 338 565 Pseudomonas sp. LH1G9 2083055 0 1 species species 1 0 1930532 Pseudomonas sp. CC6-YY-74 819 species 1 0 556 1636610 Pseudomonas sp. PONIH3 1 species 0 Pseudomonas sp. XWY-1 2069256 469 420 1981174 Pseudomonas sp. M30-35 0 species 1 0 species 1 411 1500687 Pseudomonas sp. St29 0 1 species 632 Pseudomonas sp. ATCC 13867 1294143 378 Pseudomonas sp. DR 5-09 1534110 0 1 species 432 Pseudomonas sp. FGI182 1259844 1 species 0 1 species 0 Pseudomonas koreensis 198620 943 828 Pseudomonas alcaliphila 101564 0 1 species 8854 136849 species group 8 0 685 Pseudomonas cichorii 36746 0 1 species 33069 Pseudomonas viridiflava 1034 0 species 1 1431 251698 2 species subgroup 0 1 species 0 Pseudomonas amygdali 47877 727 704 29438 Pseudomonas savastanoi 0 species 1 0 1 no rank 582 2775504 0 1 species Pseudomonas sp. Lz4W 1206777 582 755 251701 Pseudomonas syringae group genomosp. 3 species 1 0 3945 251695 0 1 species subgroup species 1 0 317 Pseudomonas syringae 3945 46257 Pseudomonas avellanae 422 0 species 1 1 species 0 459 Pseudomonas lurida 244566 425 157783 Pseudomonas cremoricolorata species 1 0 Pseudomonas frederiksbergensis 104087 1510 0 1 species 10311 136843 9 species group 0 species 1 0 200451 Pseudomonas poae 503 0 species 1 6054 294 Pseudomonas fluorescens species 1 0 629 380021 Pseudomonas protegens 0 1 species 1055 Pseudomonas azotoformans 47878 0 species 1 539 75612 Pseudomonas mandelii 1 species 0 Pseudomonas veronii 76761 337 1 species 0 Pseudomonas orientalis 76758 405 200450 Pseudomonas trivialis 432 species 1 0 Pseudomonas corrugata 47879 357 1 species 0 6 species group 0 136845 12824 Pseudomonas plecoglossicida 70775 475 1 species 0 species 1 0 303 Pseudomonas putida 6704 1840 47880 Pseudomonas fulva 0 species 1 1880 76759 Pseudomonas monteilii 0 species 1 species 1 0 78327 Pseudomonas mosselii 1131 species 1 0 47885 Pseudomonas oryzihabitans 794 species 1 0 567 1853130 Pseudomonas silesiensis 1096 157782 Pseudomonas parafulva 0 species 1 Oblitimonas 1 1849530 918 0 3 2 genus 0 1 species Oblitimonas alkaliphila 1697053 915 order 27 25 0 1 1706369 Cellvibrionales 11374 12 family 0 25 5995 Cellvibrionaceae 1 1706371 genus 2 1 0 2425 1 Teredinibacter 1217 species 1 0 2426 Teredinibacter turnerae 1216 10 1 Cellvibrio 2219 genus 4 72 0 880 Cellvibrio japonicus 155077 0 1 species 1267 2624793 0 2 no rank Cellvibrio sp. PSBB006 1987723 709 1 species 0 species 1 0 558 1945512 Cellvibrio sp. PSBB023 680 Simiduia 1 447467 0 5 2 genus 447471 Simiduia agarivorans 675 0 species 1 1 316625 Saccharophagus 917 genus 2 1 0 86304 Saccharophagus degradans 916 0 species 1 2036021 937 genus 1 0 1737490 Agarilytica rhodophyticola 937 0 species 1 family 5 17 0 1 1706375 Spongiibacteraceae 1878 Spongiibacter 1 630749 783 2 genus 0 1 no rank 1 0 2631504 782 0 species 1 782 1620392 Spongiibacter sp. IMCC21906 genus 1 0 1084558 591 0 1 species Oceanicoccus sagamiensis 716816 591 0 genus 1 487 1434050 1470434 Zhongshania aliphaticivorans 487 species 1 0 4 family 0 4 Halieaceae 1706372 1 1286 1217416 1 Halioglobus 1282 genus 3 8 0 Halioglobus japonicus 930805 439 1 species 0 0 species 1 930806 Halioglobus pacificus 835 Microbulbiferaceae 1706373 1 2190 0 11 5 family 48073 1 Microbulbifer 2179 genus 4 30 0 species 1 0 260552 Microbulbifer agarilyticus 765 469 Microbulbifer thermotolerans 252514 0 1 species 0 species 1 915 1769779 Microbulbifer aggregans 1 1692040 Acidiferrobacterales 1282 order 6 18 0 1264 1692041 1 Acidiferrobacteraceae 73 0 family 5 652 1692042 1 Sulfurifustis 5 0 genus 2 1 species 0 647 Sulfurifustis variabilis 1675686 539 Sulfuricaulis 1 1744881 0 12 2 genus 0 1 species Sulfuricaulis limicola 1620215 527 2 no rank 0 1587 33811 638 83406 gamma proteobacterium HdN1 0 species 1 species 1 0 1248727 endosymbiont of unidentified scaly snail isolate Monju 949 0 clade 1693 2896315 1783272 no rank 1 0 489 1859062 0 genus 1 489 262406 489 Thermobaculum terrenum 166501 0 1 species 200795 1 Chloroflexi 9655 1 0 phylum 45 class 5 15 0 475962 1 Caldilineae 714 475963 1 Caldilineales 699 3 0 order 4 3 family 0 1 Caldilineaceae 1 475964 696 695 Caldilinea 233191 1 0 6 2 genus 689 133453 Caldilinea aerophila species 1 0 0 3 5 class 1196 Ardenticatenia 1382928 1 10 0 order 4 1193 1382929 1 Ardenticatenales 3 family 0 19 1183 Ardenticatenaceae 1 1382930 2 0 genus 2 1164 1988031 1 Candidatus Promineofilum 1 species 0 1162 Candidatus Promineofilum breve 1806508 1977 Chloroflexia 1 32061 11 class 0 4 13 0 order 10 32064 1 Chloroflexales 1973 1508594 921 5 suborder 0 921 Chloroflexaceae 1106 1 5 family 0 1 920 Chloroflexus 1 1107 4 genus 0 4 0 species 1 259 152260 Chloroflexus aggregans 657 1108 1 Chloroflexus aurantiacus 329 0 species 2 0 strain 1 480224 Chloroflexus sp. Y-400-fl 328 1039 1508595 4 suborder 0 family 4 1 0 1508635 1 Roseiflexaceae 1039 1038 Roseiflexus 120961 1 3 genus 0 2 0 no rank 1 2609473 602 602 357808 Roseiflexus sp. RS-1 0 species 1 120962 Roseiflexus castenholzii 434 species 1 0 3 0 class 8 2646 1 301297 Dehalococcoidia 1718 Dehalococcoidales 1 1202465 4 order 0 1 1717 1202464 family 3 0 0 1 3 genus Dehalococcoides 1 61434 1717 1315 61435 Dehalococcoides mccartyi 0 species 1 no rank 1 0 401 237581 401 Dehalococcoides sp. UCH007 1522671 1 species 0 925 670486 1 Dehalogenimonas genus 3 2 0 Dehalogenimonas formicexedens 1839801 525 1 species 0 0 species 1 398 552810 Dehalogenimonas lykanthroporepellens class 8 11 0 189775 1 Thermomicrobia 1241 order 3 1 0 189776 1 Thermomicrobiales 359 358 189777 0 2 family Thermomicrobium 499 1 358 0 3 2 genus Thermomicrobium roseum 500 355 0 1 species 0 subclass 4 871 85000 871 Sphaerobacterales 85001 1 0 9 4 order 862 255728 3 suborder 0 7 0 family 3 862 85002 1 Sphaerobacteraceae 2056 1 Sphaerobacter 855 3 0 genus 2 0 1 species Sphaerobacter thermophilus 2057 852 Anaerolineae 1 292625 1880 0 5 7 class 292629 1 Anaerolineales 1875 order 6 15 0 292628 1 Anaerolineaceae 1860 family 5 12 0 Anaerolinea 233189 1 933 0 5 2 genus 0 1 species Anaerolinea thermophila 167964 928 1324991 632 0 1 no rank species 1 0 1889813 Anaerolineaceae bacterium oral taxon 439 632 283 2019482 genus 1 0 1986204 Brevefilum fermentans 283 species 1 0 578 67819 0 4 phylum 4 class 0 578 1663419 578 Fimbriimonadales 1 1663425 0 1 4 order 0 4 3 family Fimbriimonadaceae 1 1663426 577 573 1 1005038 Fimbriimonas 1 0 genus 2 572 Fimbriimonas ginsengisoli 1005039 0 1 species clade 146 0 57378 1798711 57378 1 1117 Cyanobacteria phylum 146 12 0 0 161 55 order 19957 Synechococcales 1890424 1 11786 1890426 1 Synechococcaceae 53 0 family 33 146785 197 0 1 genus 197 146786 Thermosynechococcus elongatus species 1 0 1458 1 167375 Cyanobium genus 3 20 0 2627006 894 0 1 no rank species 1 0 894 1851505 Cyanobium sp. NIES-981 59930 Cyanobium gracile 544 0 species 1 26 genus 0 76 Synechococcus 1129 1 9566 32046 Synechococcus elongatus 364 0 species 1 0 species 1 417 33070 Synechococcus lividus no rank 23 0 2626047 8709 335 Synechococcus sp. UTEX 2973 1350461 1 species 0 224 Synechococcus sp. PCC 8807 195248 1 species 0 179 1280380 Synechococcus sp. KORDI-100 species 1 0 32049 Synechococcus sp. PCC 7002 173 0 species 1 0 species 1 547 316279 Synechococcus sp. CC9902 Synechococcus sp. PCC 73109 374982 218 1 species 0 species 1 0 370 64471 Synechococcus sp. CC9311 species 1 0 1173263 Synechococcus sp. PCC 7502 314 species 1 0 511 1827144 Synechococcus sp. NIES-970 1 species 0 252 Synechococcus sp. SynAce01 1916956 species 1 0 110662 Synechococcus sp. CC9605 372 species 1 0 32051 Synechococcus sp. WH 7803 476 361 Synechococcus sp. KORDI-52 585425 1 species 0 species 1 0 599 321332 Synechococcus sp. JA-2-3B'a(2-13) 248 Synechococcus sp. PCC 7117 195498 0 1 species 448 585423 Synechococcus sp. KORDI-49 0 species 1 1 species 0 Synechococcus sp. WH 8109 166314 327 512 29410 Synechococcus sp. WH 8103 species 1 0 1 species 0 198 Synechococcus sp. PCC 6312 195253 374981 Synechococcus sp. PCC 7003 211 0 species 1 0 1 species 893 Synechococcus sp. JA-3-3Ab 321327 84588 Synechococcus sp. WH 8102 517 species 1 0 316278 Synechococcus sp. RCC307 424 0 species 1 0 9 2 genus Dactylococcopsis 13034 1 512 species 1 0 503 292566 Dactylococcopsis salina 0 family 1 937 2303730 170610 937 0 genus 1 1 species 0 937 Halomicronema hongdechloris 1209493 0 2 5 family Merismopediaceae 1890428 1 1117 genus 4 9 0 1115 1142 1 Synechocystis no rank 3 0 2640012 1106 0 1 species 359 Synechocystis sp. IPPAS B-1465 2116702 Synechocystis sp. PCC 6714 1147 388 0 1 species 0 species 1 1148 Synechocystis sp. PCC 6803 359 0 2 5 family Prochloraceae 1 1213 3415 genus 4 5 0 1 1218 Prochlorococcus 3413 1 species 0 2661 Prochlorococcus marinus 1219 0 2 no rank 747 2627481 422 Prochlorococcus sp. MIT 0604 1501268 1 species 0 325 Prochlorococcus sp. MIT 0801 1501269 1 species 0 family 6 6 0 1570 1890438 1 Leptolyngbyaceae 0 3 5 genus 1564 Leptolyngbya 1 47251 species 1 0 1184 Leptolyngbya boryana 503 3 no rank 0 2650499 1058 1752064 Leptolyngbya sp. NIES-3755 374 species 1 0 1 species 0 Leptolyngbya sp. PCC 7376 111781 301 1 species 0 Leptolyngbya sp. O-77 1080068 383 3 family 0 1 Pseudanabaenaceae 1 1890436 400 genus 2 2 0 399 1152 1 Pseudanabaena 397 2593292 0 no rank 1 Pseudanabaena sp. PCC 7367 82654 397 0 1 species 571 1890429 0 1 family 155977 571 0 genus 1 0 1 species Acaryochloris marina 155978 571 12 0 order 4 1 1890505 Chroococcidiopsidales 448 3 family 0 15 Chroococcidiopsidaceae 1890528 1 436 1 0 genus 2 1 54298 Chroococcidiopsis 421 54299 Chroococcidiopsis thermalis 420 0 species 1 0 8 6 class 1195 Gloeobacteria 307596 1 1187 Gloeobacterales 307595 1 5 order 0 20 family 4 8 0 1 1890422 Gloeobacteraceae 1167 genus 3 7 0 1 33071 Gloeobacter 1159 550 1416614 Gloeobacter kilaueensis species 1 0 1 species 0 602 Gloeobacter violaceus 33072 16217 1301283 42 subclass 0 1 1118 Chroococcales 11232 20 0 order 23 3310 1890464 1 Chroococcaceae 23 0 family 7 genus 3 4 0 1951 669357 1 Geminocystis 0 no rank 2 2625037 1947 0 1 species 965 Geminocystis sp. NIES-3708 1615909 982 Geminocystis sp. NIES-3709 1617448 0 1 species 1 genus 0 798 268175 0 no rank 1 2648896 798 1 species 0 798 Chondrocystis sp. NIES-4102 2005460 Gloeocapsa 1 102231 538 2 genus 0 1 1 no rank 0 2623012 537 0 1 species Gloeocapsa sp. PCC 7428 1173026 537 0 8 family 1890450 5664 genus 2 0 1729 2546365 1729 2546366 2 species 0 806 Cyanothece sp. PCC 8802 395962 0 1 strain 0 strain 1 41431 Cyanothece sp. PCC 8801 923 0 genus 1 1013 263510 1 species 0 1013 2546360 Cyanothece sp. ATCC 51142 43989 1013 0 1 strain 2164 28070 2 genus 0 1339 2546356 0 species 1 0 1 strain Cyanothece sp. PCC 7424 65393 1339 2546359 825 0 1 species 825 Cyanothece sp. PCC 7822 497965 0 1 strain 508 1453359 1 genus 0 species 1 0 508 713887 Candidatus Atelocyanobacterium thalassa 250 92682 0 no rank 2 250 Halothece 76023 1 0 10 2 genus 0 no rank 1 240 2632878 0 1 species 240 Halothece sp. PCC 7418 65093 3 family 0 2 Cyanobacteriaceae 1890452 1 1024 1022 1 102234 Cyanobacterium 2 0 genus 2 1 species 0 Cyanobacterium aponinum 379064 1020 1890449 1 Microcystaceae 1214 family 4 9 0 1 0 genus 3 1205 1125 1 Microcystis Microcystis aeruginosa 1126 609 1 species 0 2643300 595 0 no rank 1 1 species 0 Microcystis sp. MC19 1967666 595 4985 Oscillatoriales 1 1150 19 order 0 36 family 4 1 0 1683 1 1892252 Microcoleaceae 44471 1 Microcoleus 773 genus 2 1 0 2642155 772 0 1 no rank 0 1 species 772 Microcoleus sp. PCC 7113 1173027 1 genus 0 909 1205 0 1 species 909 Trichodesmium erythraeum 1206 1665 1892254 1 Oscillatoriaceae 20 0 family 6 704 Moorea 1 1155738 2 genus 0 2 1 species 0 702 Moorea producens 1155739 1 1158 Oscillatoria 941 genus 3 6 0 species 1 0 454 118323 Oscillatoria acuminata 481 482564 Oscillatoria nigro-viridis species 1 0 1892255 1 Gomontiellaceae 642 family 2 1 0 641 241421 1 genus 0 641 241425 Crinalium epipsammum 0 species 1 Cyanothecaceae 1 1892249 282 0 3 3 family 279 Cyanothece 43988 1 0 27 2 genus 2649277 252 no rank 1 0 395961 Cyanothece sp. PCC 7425 252 0 species 1 3 family 0 2 677 Coleofasciculaceae 1 1892251 1 63132 Geitlerinema 675 genus 2 1 0 1 no rank 0 2648775 674 0 1 species 674 Geitlerinema sp. PCC 7407 1173025 32 order 0 152 Nostocales 1161 1 17008 4860 2661849 8 family 0 0 21 8 genus 4860 Calothrix 1 1186 1 species 0 552 Calothrix parietina 32054 0 no rank 6 4287 2619626 0 1 species 390 Calothrix sp. PCC 7507 99598 558 Calothrix sp. 336/3 1337936 1 species 0 934 Calothrix sp. NIES-4101 2005461 0 1 species 0 1 species Calothrix sp. NIES-2098 1954171 754 1102 2005469 Calothrix sp. NIES-4071 0 species 1 0 species 1 2005462 Calothrix sp. NIES-3974 549 1892263 600 family 1 0 600 1190 1 genus 0 494603 600 0 no rank 1 600 1752063 Fischerella sp. NIES-3754 species 1 0 0 44 18 family Nostocaceae 1 1162 9881 1 1177 Nostoc 6769 genus 10 46 0 0 1 species Nostoc flagelliforme 1306274 1217 7 no rank 0 2593658 4870 0 1 species 960 Nostoc sp. PCC 7120 103690 570 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 species 1 Nostoc sp. PCC 7107 317936 547 1 species 0 1 species 0 761 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 0 1 species 867 Nostoc sp. CENA543 1869241 712 Nostoc sp. NIES-3756 1751286 0 1 species species 1 0 453 28072 Nostoc sp. PCC 7524 0 species 1 636 272131 Nostoc punctiforme genus 4 6 0 1 1163 Anabaena 1893 0 2 no rank 1260 2619674 601 1647413 Anabaena sp. WA102 0 species 1 659 Anabaena sp. 90 46234 1 species 0 1165 Anabaena cylindrica 627 0 species 1 1175 1 264688 Trichormus genus 3 1 0 1 species 0 563 Trichormus variabilis 264691 1164 Trichormus azollae 611 0 species 1 5 0 family 3 995 1185 1 Rivulariaceae 990 1 373984 Rivularia 1 0 genus 2 989 2676603 1 no rank 0 1 species 0 Rivularia sp. PCC 7116 373994 989 1219117 520 0 no rank 1 1 species 0 520 Nostocales cyanobacterium HT-58-2 1940762 1 52604 Pleurocapsales 2257 1 0 order 5 894 1890500 1 family 0 44474 894 0 1 genus 1 species 0 Pleurocapsa minor 54308 894 3 family 0 2 1362 Dermocarpellaceae 1 1890498 1360 102115 genus 2 0 1 species 0 Stanieria cyanosphaera 102116 545 1 no rank 0 815 2642663 1 species 0 Stanieria sp. NIES-3757 1807358 815 1983111 284 0 1 no rank species 1 0 718217 cyanobacterium endosymbiont of Epithemia turgida 284 Actinobacteria 1 201174 333029 640 phylum 0 38 3 0 class 5 1 84995 Rubrobacteria 735 order 4 16 0 1 84996 Rubrobacterales 732 84997 716 3 family 0 0 6 3 genus Rubrobacter 1 42255 716 Rubrobacter radiotolerans 42256 308 0 1 species 1 species 0 Rubrobacter xylanophilus 49319 402 Actinobacteria 1 1760 287135 587 class 0 1926 1449 1643682 0 7 order 0 33 7 family 1449 Geodermatophilaceae 1 85030 1 1860 Geodermatophilus 542 3 0 genus 2 0 1 species Geodermatophilus obscurus 1861 539 2 0 genus 2 332 38501 1 Blastococcus species 1 0 330 138336 Blastococcus saxobsidens genus 2 8 0 88138 1 Modestobacter 542 534 477641 Modestobacter marinus species 1 0 54444 Streptomycetales 85011 1 82 order 0 113 81 family 0 435 Streptomycetaceae 2062 1 54331 50787 1 1883 Streptomyces genus 75 1851 0 0 1 species Streptomyces hygroscopicus 1912 1499 1 species 0 567 Streptomyces noursei 1971 523 Streptomyces vietnamensis 362257 1 species 0 Streptomyces parvulus 146923 484 1 species 0 1246 68249 Streptomyces pactum species 1 0 379067 Streptomyces bingchenggensis 738 0 species 1 species 1 0 638 29303 Streptomyces cattleya 611 1926 Streptomyces reticuli 0 species 1 Streptomyces niveus 193462 631 0 1 species species 1 0 552 68570 Streptomyces albulus Streptomyces puniciscabiei 164348 664 0 1 species 497 Streptomyces glaucescens 1907 1 species 0 701 1616117 Streptomyces formicae 0 species 1 955 75293 Streptomyces autolyticus species 1 0 1 species 0 690 Streptomyces albireticuli 1940 1038928 Streptomyces xinghaiensis 556 species 1 0 1 species 0 Streptomyces alfalfae 1642299 591 species 1 0 1098 68280 Streptomyces violaceusniger 559 Streptomyces leeuwenhoekii 1437453 0 1 species 0 species 1 408015 Streptomyces xiamenensis 477 0 species 1 454 1889 Streptomyces ambofaciens 285473 Streptomyces rubrolavendulae 486 species 1 0 0 1 species Streptomyces alboflavus 67267 597 1169025 Streptomyces pratensis 653 0 species 1 Streptomyces albus 1888 1264 0 1 species 0 species 1 33903 Streptomyces avermitilis 691 538 553510 Streptomyces gilvosporeus species 1 0 448 68202 Streptomyces fulvissimus species 1 0 species 1 0 441 1950 Streptomyces peucetius 1 species 0 575 Streptomyces lavendulae 1914 1621 47763 Streptomyces lydicus 0 species 1 1477431 1135 0 2 species group 630 1902 Streptomyces coelicolor species 1 0 Streptomyces sampsonii 42239 505 1 species 0 0 species group 2 629295 888 1482558 442 1 species subgroup 0 0 species 1 442 1908 Streptomyces globisporus 1482596 446 1 species subgroup 0 Streptomyces griseus 1911 446 0 1 species 544 42684 Streptomyces collinus 0 species 1 0 1 species Streptomyces pluripotens 1355015 435 564 68192 Streptomyces cyaneogriseus 0 species 1 0 species 1 1935 Streptomyces violaceoruber 560 Streptomyces lividans 1916 468 0 1 species Streptomyces griseochromogenes 68214 748 0 1 species 0 species 1 504 1783515 Streptomyces sp. S10(2016) 15027 2593676 no rank 24 0 1 species 0 Streptomyces sp. PAMC 26508 1265601 458 0 species 1 1837283 Streptomyces sp. S8 452 746 Streptomyces sp. CdTB01 1725411 1 species 0 1961713 Streptomyces sp. MOE7 593 0 species 1 1 species 0 539 Streptomyces sp. FR-008 206662 622 Streptomyces sp. CFMR 7 1649184 0 1 species species 1 0 2059884 Streptomyces sp. CMB-StM0423 739 0 1 species 649 Streptomyces sp. 3211 1964449 652 Streptomyces sp. CNQ-509 444103 1 species 0 species 1 0 1841249 Streptomyces sp. RTd22 1131 606 Streptomyces sp. Mg1 465541 0 1 species Streptomyces sp. TN58 234612 466 1 species 0 444 Streptomyces sp. WAC00288 2094021 1 species 0 1 species 0 Streptomyces sp. fd1-xmd 1812480 573 1661694 Streptomyces sp. Tue 6075 559 0 species 1 1 species 0 Streptomyces sp. SAT1 1849967 561 0 species 1 524 1972846 Streptomyces sp. Sge12 0 1 species 472 Streptomyces sp. CCM_MD2014 1561022 0 1 species 726 Streptomyces sp. P3 2135430 537 1984801 Streptomyces sp. CLI2509 0 species 1 species 1 0 1262452 Streptomyces sp. 769 730 species 1 0 862751 Streptomyces sp. SirexAA-E 441 1495638 Streptomyces sp. M56 1269 species 1 0 1 species 0 538 Streptomyces sp. 4F 1751294 1 species 0 Streptomyces venezuelae 54571 1031 456 Streptomyces pristinaespiralis 38300 0 1 species 1930 Streptomyces scabiei 749 0 species 1 616 2049881 Streptomyces sp. XZHG99 0 species 1 778 Streptomyces clavuligerus 1901 1 species 0 584 1915 Streptomyces lincolnensis 0 species 1 0 species 1 92644 Streptomyces malaysiensis 1067 0 species 1 737 1969 Streptomyces chartreusis 0 32 5 genus 3109 Kitasatospora 2063 1 950 2633591 1 no rank 0 0 1 species Kitasatospora sp. MMS16-BH015 2018025 950 species 1 0 1894 Kitasatospora aureofaciens 799 705 Kitasatospora setae 2066 1 species 0 1 species 0 623 Kitasatospora albolonga 68173 no rank 2 0 390 1643818 0 4 2 genus Thermobispora 147067 1 390 386 Thermobispora bispora 2006 0 1 species 622452 592 order 3 0 0 13 3 family 592 Kineosporiaceae 1 83778 2 genus 0 3 Kineococcus 33981 1 579 0 1 species 576 Kineococcus radiotolerans 131568 1643684 486 0 3 order 486 85031 1 Nakamurellaceae family 3 10 0 11 0 genus 2 476 53460 1 Nakamurella 465 53461 Nakamurella multipartita species 1 0 0 47 19 order 8737 Actinomycetales 1 2037 8690 Actinomycetaceae 1 2049 0 964 18 family Mobiluncus 1 2050 896 2 genus 0 20 Mobiluncus curtisii 2051 876 1 species 0 Arcanobacterium 28263 1 362 0 1 2 genus Arcanobacterium haemolyticum 28264 361 1 species 0 2 genus 0 6 Trueperella 1 1069494 810 0 1 species Trueperella pyogenes 1661 804 1653174 458 0 1 genus 1 species 0 458 Actinotignum schaalii 59505 66 0 genus 9 1654 1 Actinomyces 4339 0 species 1 624 111015 Actinomyces radicidentis 0 species 1 647 544580 Actinomyces oris 0 species 1 1960083 Actinomyces gaoshouyii 416 739 1852377 Actinomyces pacaensis 0 species 1 1912795 Actinomyces sp. VUL4_3 238 species 1 0 no rank 3 0 1609 2609248 0 1 species 465 Actinomyces sp. Chiba101 1851395 1 species 0 460 Actinomyces sp. oral taxon 897 2081702 712122 Actinomyces sp. oral taxon 414 684 0 species 1 1 genus 0 861 2529408 Actinomyces meyeri 52773 861 1 species 0 0 no rank 1 288 52018 288 Actinobacteria bacterium IMCC26256 1650658 1 species 0 141 order 0 574 Micrococcales 85006 1 47549 Promicromonosporaceae 1 85017 2533 0 30 9 family 1 186188 Xylanimonas 530 genus 2 9 0 Xylanimonas cellulosilytica 186189 521 1 species 0 981 254250 1 Isoptericola genus 3 22 0 382 Isoptericola dokdonensis 372663 0 1 species 577 Isoptericola variabilis 139208 1 species 0 0 18 3 genus 992 Cellulosimicrobium 1 157920 species 1 0 443 1710 Cellulosimicrobium cellulans no rank 1 0 2624466 531 0 species 1 1980001 Cellulosimicrobium sp. TH-20 531 85018 347 0 family 2 347 1 1862 Dermatophilus 5 0 genus 2 1863 Dermatophilus congolensis 342 species 1 0 0 2 family 510 145360 0 6 2 genus 510 Sanguibacter 1 60919 60920 Sanguibacter keddieii 504 0 species 1 0 14 7 family Dermacoccaceae 1 145357 1156 1 745364 Luteipulveratus 472 7 0 genus 2 465 571913 Luteipulveratus mongoliensis species 1 0 2 0 genus 2 57495 1 Dermacoccus 341 339 Dermacoccus nishinomiyaensis 1274 0 1 species 329 57499 1 Kytococcus genus 2 8 0 0 1 species 321 Kytococcus sedentarius 1276 1779 1 85021 Intrasporangiaceae 31 0 family 9 510 1 267408 Arsenicicoccus 6 0 genus 2 2663846 504 no rank 1 0 1658671 Arsenicicoccus sp. oral taxon 190 504 0 species 1 Serinicoccus 1 265976 503 2 genus 0 23 species 1 0 480 1758689 Serinicoccus sp. JLT9 1 53357 Intrasporangium 342 11 0 genus 2 331 Intrasporangium calvum 53358 0 1 species 1 53457 Janibacter 393 genus 2 8 0 1 species 0 Janibacter indicus 857417 385 family 3 10 0 790 85019 1 Brevibacteriaceae 0 18 2 genus Brevibacterium 1696 1 780 species 1 0 1703 Brevibacterium linens 762 197 85022 1 Jonesiaceae 1 0 family 3 genus 2 3 0 1 43673 Jonesia 196 193 43674 Jonesia denitrificans 0 species 1 392 Beutenbergiaceae 125316 1 3 family 0 2 84756 1 Beutenbergia 390 15 0 genus 2 375 84757 Beutenbergia cavernae 0 species 1 1268 1 Micrococcaceae 18120 family 38 418 0 genus 3 3 0 3518 1 32207 Rothia 1 species 0 3230 Rothia mucilaginosa 43675 Rothia dentocariosa 2047 285 0 1 species 126 1645 1 genus 0 Renibacterium salmoninarum 1646 126 0 1 species 57493 1 Kocuria 1142 22 0 genus 4 1 species 0 Kocuria palustris 71999 342 species 1 0 72000 Kocuria rhizophila 393 1 species 0 385 Kocuria flava 446860 490 Neomicrococcus 1868332 1 0 7 2 genus 0 1 species Neomicrococcus aestuarii 556325 483 2078575 288 genus 1 0 0 species 1 1618207 Arthrobacter sp. IHBB 11108 288 1742989 1 Glutamicibacter 813 genus 2 9 0 species 1 0 804 256701 Glutamicibacter arilaitensis Arthrobacter 1663 1 8378 15 genus 0 212 1042 656366 Arthrobacter alpinus species 1 0 12 no rank 0 235627 6256 0 1 species 492 Arthrobacter sp. ZXY-2 1806905 1652545 Arthrobacter sp. YC-RL1 682 0 species 1 433 Arthrobacter sp. FB24 290399 1 species 0 442 2020486 Arthrobacter sp. YN 0 species 1 2079227 Arthrobacter sp. PGP41 346 species 1 0 469 1357915 Arthrobacter sp. QXT-31 0 species 1 0 species 1 602 1704044 Arthrobacter sp. ERGS1:01 369 1494608 Arthrobacter sp. PAMC 25486 species 1 0 species 1 0 706 1690248 Arthrobacter sp. LS16 1 species 0 Arthrobacter sp. ATCC 21022 1771959 497 1118963 Arthrobacter sp. Rue61a 663 0 species 1 Arthrobacter sp. U41 1849032 555 1 species 0 868 Arthrobacter crystallopoietes 37928 1 species 0 1742993 1 Pseudarthrobacter 1322 9 0 genus 4 419 121292 Pseudarthrobacter sulfonivorans species 1 0 Pseudarthrobacter chlorophenolicus 85085 428 1 species 0 0 1 species Pseudarthrobacter phenanthrenivorans 361575 466 439 596707 1 Sinomonas 11 0 genus 2 1 species 0 428 Sinomonas atrocyanea 37927 genus 1 0 554 1742992 species 1 0 43663 Paenarthrobacter aurescens 554 Micrococcus 1269 1 632 2 genus 0 9 1 species 0 Micrococcus luteus 1270 623 3454 1 85020 Dermabacteraceae 21 0 family 10 1 0 genus 2 338 1 36739 Dermabacter 337 1630135 Dermabacter vaginalis species 1 0 208 472568 genus 1 0 472569 Devriesea agamarum 208 species 1 0 genus 6 49 0 2887 1 43668 Brachybacterium 0 1 species Brachybacterium sp. VM2412 2017484 490 0 1 species 693 Brachybacterium ginsengisoli 1331682 617 Brachybacterium faecium 43669 0 1 species 0 species 1 518 2017485 Brachybacterium sp. VR2415 1 no rank 0 520 2623841 Brachybacterium sp. P6-10-X1 1903186 520 0 1 species 200 577468 1 no rank 0 genus 1 0 200 2038 1 species 0 200 Tropheryma whipplei 2039 15460 85023 1 Microbacteriaceae family 47 156 0 754 1655488 no rank 3 0 3 clade 0 754 1655489 1 529883 Rhodoluna 754 genus 3 19 0 169 Candidatus Rhodoluna planktonica 535712 0 1 species 529884 Rhodoluna lacicola 566 species 1 0 0 25 4 genus Curtobacterium 2034 1 1489 0 1 species 553 Curtobacterium pusillum 69373 911 257496 no rank 2 0 Curtobacterium sp. MR_MD2014 1561023 495 0 1 species 0 1 species 416 Curtobacterium sp. BH-2-1-1 1905847 0 genus 1 447237 409 no rank 1 0 2626248 409 0 1 species 409 Frondihabitans sp. PAMC 28766 1795630 2 genus 0 2 469 Cnuibacter 1 1759331 1619308 Cnuibacter physcomitrellae 467 species 1 0 0 genus 1 1434032 196 0 species 1 196 1159327 Pontimonas salivibrio 1 518733 Microterricola 523 2 0 genus 2 0 species 1 412690 Microterricola viridarii 521 14 0 genus 2 1 110932 Leifsonia 900 1575 Leifsonia xyli 886 species 1 0 33886 1 Rathayibacter 544 genus 3 3 0 1 species 0 125 Rathayibacter toxicus 145458 416 33888 Rathayibacter tritici 0 species 1 1123 Cryobacterium 1 69578 0 15 3 genus no rank 1 0 2649013 463 0 1 species 463 Cryobacterium sp. LW097 1978566 670052 Cryobacterium arcticum 645 0 species 1 55 0 genus 6 1573 1 Clavibacter 1721 5 species 0 327 Clavibacter michiganensis 28447 1 1666 Clavibacter nebraskensis 31963 341 0 1 subspecies 1 subspecies 0 Clavibacter sepedonicus 31964 376 0 1 subspecies Clavibacter insidiosus 33014 248 1 subspecies 0 Clavibacter capsici 1874630 374 334 1 337004 Microcella 1 0 genus 2 279828 Microcella alkaliphila 333 0 species 1 genus 1 0 1705353 507 species 1 0 507 708131 Aurantimicrobium minutum 595 1 33877 Agromyces 2 0 genus 2 species 1 0 453304 Agromyces aureus 593 235 0 genus 14 33882 1 Microbacterium 5740 36805 Microbacterium aurum 418 species 1 0 Microbacterium chocolatum 84292 273 1 species 0 Microbacterium paludicola 300019 418 0 1 species 1 species 0 Microbacterium hominis 162426 468 0 8 no rank 3561 2609290 Microbacterium sp. BH-3-3-3 1906742 434 0 1 species 1938334 Microbacterium sp. TPU 3598 427 0 species 1 0 species 1 367477 Microbacterium sp. XT11 506 465 1795053 Microbacterium sp. PAMC 28756 species 1 0 Microbacterium sp. CGR1 1696072 346 0 1 species 335 1916917 Microbacterium sp. 1.5R 0 species 1 Microbacterium sp. No. 7 1714373 489 0 1 species 2103230 Microbacterium sp. str. 'China' 559 0 species 1 367 2033 Microbacterium testaceum 0 species 1 85016 1 Cellulomonadaceae 2037 family 6 17 0 genus 5 29 0 2020 1707 1 Cellulomonas 1 species 0 Cellulomonas fimi 1708 612 553 1711 Cellulomonas flavigena 0 species 1 Cellulomonas gilvus 11 412 1 species 0 414 2620175 0 1 no rank 414 Cellulomonas sp. PSBB021 2003551 1 species 0 85007 1 Corynebacteriales 67173 489 0 order 161 Segniliparaceae 1 316606 192 0 6 3 family 1 0 genus 2 186 1 286801 Segniliparus species 1 0 286802 Segniliparus rotundus 185 697024 290 no rank 2 0 1 0 genus 2 290 1 1847725 Lawsonella 1 species 0 289 Lawsonella clevelandensis 1528099 20468 1 1762 Mycobacteriaceae family 56 52 0 1073531 615 0 2 genus species 1 0 264 875328 Mycobacterium sinense 0 1 species Mycobacterium terrae 1788 351 5558 1866885 0 13 genus 0 species 1 387 36814 Mycobacterium rhodesiae 1810 Mycobacterium vaccae 390 species 1 0 1772 Mycobacterium smegmatis 601 0 species 1 Mycobacterium litorale 758802 356 0 1 species 0 1 species 336 Mycobacterium aurum 1791 0 1 species 452 Mycobacterium phlei 1771 species 1 0 363 1766 Mycobacterium fortuitum 630 Mycobacterium goodii 134601 0 1 species 0 species 1 1797 Mycobacterium thermoresistibile 362 413 1800 Mycobacterium chubuense 0 species 1 Mycobacterium neoaurum 1795 479 0 1 species 453 1804 Mycobacterium gilvum 0 species 1 species 1 0 336 110539 Mycobacterium vanbaalenii genus 34 880 0 12143 1 1763 Mycobacterium 1 species 0 Mycobacterium kansasii 1768 318 2642494 5188 no rank 13 0 0 species 1 1545728 Mycobacterium sp. EPa45 372 470 164756 Mycobacterium sp. MCS 0 species 1 454 Mycobacterium sp. JLS 164757 1 species 0 0 1 species 438 Mycobacterium sp. djl-10 1879023 Mycobacterium sp. JS623 212767 588 0 1 species 1273687 Mycobacterium sp. VKM Ac-1817D 376 species 1 0 370 Mycobacterium sp. PYR15 2051552 0 1 species 0 1 species Mycobacterium sp. MOTT36Y 1168287 112 0 species 1 189918 Mycobacterium sp. KMS 475 351 1920667 Mycobacterium sp. WY10 0 species 1 297 1561223 Mycobacterium sp. QIA-37 species 1 0 0 species 1 1682113 Mycobacterium sp. YC-RL4 406 1 species 0 479 Mycobacterium sp. NRRL B-3805 1570328 1 species 0 Mycobacterium ulcerans 1809 288 506 Mycobacterium dioxanotrophicus 482462 1 species 0 2348 120793 0 8 species group 764 1764 Mycobacterium avium species 1 0 Mycobacterium paraintracellulare 1138383 141 0 1 species 701042 Mycobacterium marseillense 275 species 1 0 species 1 0 388 339268 Mycobacterium colombiense 780 1 1767 Mycobacterium intracellulare 163 0 species 4 1 subspecies 0 Mycobacterium chimaera 222805 309 155 1203599 Mycobacterium yongonense subspecies 1 0 0 1 subspecies Mycobacterium indicus pranii 35617 153 4 species group 0 872 77643 224 Mycobacterium canettii 78331 1 species 0 648 1773 1 Mycobacterium tuberculosis 228 0 species 3 0 biotype 1 1765 Mycobacterium bovis 212 208 33894 Mycobacterium africanum biotype 1 0 Mycobacterium marinum 1781 436 1 species 0 Mycobacterium haemophilum 29311 481 1 species 0 0 species 1 122 1769 Mycobacterium leprae 0 1 species Mycobacterium liflandii 261524 423 0 1 species group 281 2249310 722731 Mycobacterium shigaense 281 species 1 0 697025 355 0 1 genus 355 Hoyosella subflava 639313 1 species 0 670516 1745 genus 5 0 0 1 species Mycobacterium chelonae 1774 246 219 Mycobacterium saopaulense 1578165 0 1 species 620 Mycobacterium abscessus 36809 1 species 0 species 1 0 316 83262 Mycobacterium immunogenum 344 1520670 Mycobacterium stephanolepidis 0 species 1 1 1653 Corynebacteriaceae 25176 193 0 family 52 1716 1 Corynebacterium 24983 476 0 genus 51 0 1 species Corynebacterium kutscheri 35755 378 247 Corynebacterium atypicum 191610 0 1 species 0 1 species 1416 Corynebacterium argentoratense 42817 440 156978 Corynebacterium imitans species 1 0 Corynebacterium phocae 161895 201 1 species 0 0 1 species 668 Corynebacterium stationis 1705 444 136857 Corynebacterium testudinoris 0 species 1 Corynebacterium lactis 1231000 220 0 1 species 1 species 0 497 Corynebacterium frankenforstense 1230998 species 1 0 587 191493 Corynebacterium sphenisci 0 species 1 1404244 Corynebacterium glyciniphilum 372 614 Corynebacterium terpenotabidum 89154 0 1 species 1 species 0 370 Corynebacterium aquilae 203263 Corynebacterium glutamicum 1718 1311 0 1 species 0 species 1 413 1223514 Corynebacterium humireducens species 1 0 294 161896 Corynebacterium camporealensis Corynebacterium mustelae 571915 302 0 1 species 1 species 0 414 Corynebacterium callunae 1721 0 1 species Corynebacterium falsenii 108486 402 0 species 1 1026 1717 Corynebacterium diphtheriae 612 Corynebacterium casei 160386 0 1 species 217 Corynebacterium kroppenstedtii 161879 0 1 species species 1 0 371 1727 Corynebacterium variabile species 1 0 425 169292 Corynebacterium aurimucosum 989 Corynebacterium striatum 43770 1 species 0 0 1 species Corynebacterium resistens 258224 263 1 species 0 Corynebacterium simulans 146827 508 species 1 0 319 28028 Corynebacterium flavescens 356 Corynebacterium doosanense 1121358 0 1 species 92706 [Brevibacterium] flavum 845 species 1 0 0 species 1 924 1652495 Corynebacterium crudilactis 0 species 1 270 1050174 Corynebacterium epidermidicanis 349751 Corynebacterium marinum 416 0 species 1 Corynebacterium jeikeium 38289 861 1 species 0 no rank 2 0 2624378 847 0 1 species Corynebacterium sp. ATCC 6931 1487956 437 410 Corynebacterium sp. NML98-0116 702967 0 1 species Corynebacterium vitaeruminis 38305 620 0 1 species Corynebacterium ureicelerivorans 401472 280 1 species 0 species 1 0 161899 Corynebacterium singulare 309 0 species 1 394 225326 Corynebacterium halotolerans species 1 0 35757 Corynebacterium cystitidis 362 152794 Corynebacterium efficiens 479 0 species 1 222 187491 Corynebacterium glaucum 0 species 1 385 Corynebacterium deserti 1408191 0 1 species 1 species 0 609 Corynebacterium ulcerans 65058 0 species 1 1697 Corynebacterium ammoniagenes 399 299 Corynebacterium pseudotuberculosis 1719 1 species 0 Corynebacterium maris 575200 488 1 species 0 353 Corynebacterium uterequi 1072256 1 species 0 43771 Corynebacterium urealyticum 469 0 species 1 1 85028 Tsukamurellaceae 945 3 0 family 4 0 29 3 genus 942 Tsukamurella 1 2060 0 1 species Tsukamurella tyrosinosolvens 57704 438 0 1 species Tsukamurella paurometabola 2061 475 902 85029 0 family 3 Dietzia 37914 1 902 3 genus 0 8 0 1 no rank 2617939 563 563 712270 Dietzia sp. oral taxon 368 species 1 0 331 Dietzia timorensis 499555 0 1 species 3830 Gordoniaceae 85026 1 9 family 0 73 genus 8 57 0 1 2053 Gordonia 3757 2 no rank 0 1153 2657482 species 1 0 442 2059875 Gordonia sp. YC-JH1 0 1 species Gordonia sp. KTR9 337191 711 0 1 species Gordonia phthalatica 1136941 607 575 84595 Gordonia polyisoprenivorans 0 species 1 413 Gordonia bronchialis 2054 0 1 species Gordonia iterans 1004901 402 0 1 species Gordonia terrae 2055 550 0 1 species 14881 Nocardiaceae 1 85025 31 family 0 81 1 1817 Nocardia 4998 148 0 genus 7 species 1 0 135487 Nocardia cyriacigeorgica 1083 1 species 0 Nocardia seriolae 37332 697 species 1 0 37330 Nocardia nova 422 0 species 1 37326 Nocardia brasiliensis 1278 Nocardia terpenica 455432 685 1 species 0 0 species 1 37329 Nocardia farcinica 685 Rhodococcus 1827 1 9802 0 390 23 genus 0 12 no rank 192944 4760 1 species 0 Rhodococcus sp. YL-1 1045808 268 species 1 0 531 1653479 Rhodococcus sp. PBTS 2 Rhodococcus sp. p52 935199 321 1 species 0 Rhodococcus sp. BH4 1807790 270 0 1 species 0 1 species 343 Rhodococcus sp. 2G 1570939 565 Rhodococcus sp. WB1 1033922 1 species 0 0 1 species Rhodococcus sp. H-CA8f 1727214 398 1653478 Rhodococcus sp. PBTS 1 516 0 species 1 Rhodococcus sp. 008 1723645 270 0 1 species 1 species 0 Rhodococcus sp. B7740 1564114 575 Rhodococcus sp. WMMA185 679318 258 0 1 species 0 species 1 1805827 Rhodococcus sp. MTM3W5.2 445 242 334542 Rhodococcus qingshengii species 1 0 1 species 0 Rhodococcus aetherivorans 191292 574 0 species 1 1830 Rhodococcus ruber 542 37919 Rhodococcus opacus 1141 0 species 1 species 1 0 270 1829 Rhodococcus rhodochrous 0 species 1 1833 Rhodococcus erythropolis 391 103816 Rhodococcus pyridinivorans 350 0 species 1 43767 Rhodococcus hoagii 333 species 1 0 132919 Rhodococcus jostii 424 0 species 1 Rhodococcus fascians 1828 385 1 species 0 4 order 0 1 730 Glycomycetales 1 85014 85034 1 Glycomycetaceae 729 family 3 20 0 709 1 283810 Stackebrandtia 4 0 genus 2 0 species 1 283811 Stackebrandtia nassauensis 705 975 414714 1 Catenulisporales order 4 1 0 Catenulisporaceae 414877 1 974 3 family 0 16 958 414878 1 Catenulispora 26 0 genus 2 932 Catenulispora acidiphila 304895 0 1 species 7 order 0 12 3206 Frankiales 1 85013 3194 Frankiaceae 1 74712 6 family 0 47 5 genus 0 32 3147 Frankia 1854 1 2632575 550 no rank 1 0 0 1 species 550 Frankia sp. EAN1pec 298653 106370 Frankia casuarinae 343 species 1 0 0 1 species Frankia inefficax 298654 1626 Frankia alni 1859 596 1 species 0 order 20 21 0 9721 85008 1 Micromonosporales 28056 1 Micromonosporaceae 9700 105 0 family 19 32 0 genus 4 1 673534 Plantactinospora 2166 no rank 3 0 2134 2631981 0 species 1 865 2024580 Plantactinospora sp. KBS50 641 Plantactinospora sp. BB1 2071627 0 1 species 0 species 1 2108470 Plantactinospora sp. BC1 628 4498 1 1865 Actinoplanes 87 0 genus 6 2461 2626549 0 3 no rank Actinoplanes sp. SE50/110 134676 599 1 species 0 0 1 species Actinoplanes sp. N902-109 649831 1263 1 species 0 Actinoplanes sp. SE50 2033844 599 0 1 species Actinoplanes friuliensis 196914 907 0 1 species 1043 Actinoplanes missouriensis 1866 907 1 168694 Salinispora 10 0 genus 3 species 1 0 168697 Salinispora arenicola 417 168695 Salinispora tropica 480 species 1 0 84593 Verrucosispora 19 0 genus 1 Micromonospora 1873 1 2005 4 genus 0 29 no rank 1 0 2617518 739 species 1 0 739 648999 Micromonospora sp. L5 598 Verrucosispora maris 1003110 1 species 0 639 Micromonospora aurantiaca 47850 1 species 0 5091 1 85012 Streptosporangiales 27 0 order 15 8 0 family 3 728 1 2012 Thermomonosporaceae 720 2019 1 Thermomonospora 9 0 genus 2 1 species 0 711 Thermomonospora curvata 2020 2378 2004 1 Streptosporangiaceae family 5 33 0 12 0 genus 2 2000 1 Streptosporangium 901 889 2001 Streptosporangium roseum species 1 0 13 0 genus 2 1 83681 Nonomuraea 1444 0 no rank 1 1431 2593643 1431 1909395 Nonomuraea sp. ATCC 55076 species 1 0 1958 1 83676 Nocardiopsaceae family 6 84 0 18 0 genus 4 2013 1 Nocardiopsis 1609 0 1 species 620 Nocardiopsis dassonvillei 2014 280236 Nocardiopsis gilva 450 0 species 1 Nocardiopsis alba 53437 521 0 1 species genus 1 0 265 83677 species 1 0 2021 Thermobifida fusca 265 0 4 4 order 183 Acidothermales 1 1643683 179 1 85032 Acidothermaceae 4 0 family 3 28048 1 Acidothermus 175 4 0 genus 2 1 species 0 171 Acidothermus cellulolyticus 28049 3113 Candidatus Nanopelagicales 2039638 1 0 7 12 order 11 family 0 2162846 3106 genus 4 1 0 1 2039639 Candidatus Nanopelagicus 568 0 species 1 290 1884916 Candidatus Nanopelagicus abundans 143 1884634 Candidatus Nanopelagicus limnes 0 species 1 134 1884915 Candidatus Nanopelagicus hibericus species 1 0 0 7 7 genus Candidatus Planktophila 1 622681 2538 species 1 0 1884914 Candidatus Planktophila dulcis 372 0 species 1 573600 Candidatus Planktophila limnetica 270 1884904 Candidatus Planktophila sulfonica 399 0 species 1 species 1 0 1884905 Candidatus Planktophila versatilis 576 Candidatus Planktophila vernalis 1884907 517 0 1 species 0 1 species Candidatus Planktophila lacus 1884913 397 622450 428 0 order 3 428 Actinopolysporaceae 1 622451 0 19 3 family 0 31 2 genus Actinopolyspora 1 1849 409 species 1 0 414996 Actinopolyspora erythraea 378 Pseudonocardiales 85010 1 17331 41 order 0 34 0 293 40 family 17297 Pseudonocardiaceae 1 2070 genus 2 1 0 1835 1 Saccharopolyspora 811 810 1836 Saccharopolyspora erythraea species 1 0 821 43356 1 Kutzneria genus 2 3 0 43357 Kutzneria albida 818 species 1 0 0 1 2 genus 758 Lentzea 165301 1 0 1 species Lentzea guizhouensis 1586287 757 701 2071 genus 1 0 species 1 0 701 103731 Saccharothrix espanaensis 0 6 2 genus 660 Kibdelosporangium 1 2029 0 1 species 654 Kibdelosporangium phytohabitans 860235 3397 Pseudonocardia 1847 1 8 genus 0 106 Pseudonocardia dioxanivorans 240495 627 0 1 species no rank 6 0 2619320 2664 species 1 0 472 1690815 Pseudonocardia sp. HH130630-07 0 species 1 1641402 Pseudonocardia sp. HH130629-09 392 1 species 0 Pseudonocardia sp. EC080619-01 1096856 436 1 species 0 Pseudonocardia sp. EC080610-09 1688404 441 503 445576 Pseudonocardia sp. AL041005-10 0 species 1 0 1 species 420 Pseudonocardia sp. EC080625-04 1096868 1 1851 Saccharomonospora 270 1 0 genus 2 0 1 species 269 Saccharomonospora viridis 1852 4716 Amycolatopsis 1 1813 7 genus 0 77 1413 2618356 0 no rank 2 0 species 1 693 1896961 Amycolatopsis sp. AA4 species 1 0 720 1911175 Amycolatopsis sp. BJA-103 208439 Amycolatopsis japonica 632 0 species 1 33910 Amycolatopsis mediterranei 878 species 1 0 species 1 0 1814 Amycolatopsis methanolica 593 0 species 1 1123 31958 Amycolatopsis orientalis 2116 Actinoalloteichus 1 65496 6 genus 0 37 Actinoalloteichus hoggarensis 1470176 442 1 species 0 403 Actinoalloteichus sp. ADI127-7 1612552 1 species 0 391 340345 Actinoalloteichus hymeniacidonis 0 species 1 843 2644606 0 no rank 2 456 Actinoalloteichus sp. AHMU CJ021 2072503 0 1 species 0 1 species Actinoalloteichus sp. GBA129-24 1612551 387 0 22 3 genus 1719 Actinosynnema 40566 1 species 1 0 806 42197 Actinosynnema pretiosum 891 Actinosynnema mirum 40567 1 species 0 genus 2 5 0 142577 1 Prauserella 561 0 species 1 530584 Prauserella marina 556 674734 1 Alloactinosynnema 474 2 0 genus 2 0 1 no rank 2636053 472 1 species 0 Alloactinosynnema sp. L-07 1653480 472 1 85009 Propionibacteriales 10261 order 33 86 0 family 13 84 0 3489 85015 1 Nocardioidaceae 441 1 2040 Aeromicrobium genus 2 9 0 2041 Aeromicrobium erythreum 432 species 1 0 182639 1 Kribbella 534 genus 2 9 0 0 1 species 525 Kribbella flavida 182640 0 19 4 genus 1415 Nocardioides 1 1839 Nocardioides sp. 78 2045452 372 0 1 species 2615069 587 0 no rank 1 Nocardioides sp. JS614 196162 587 0 1 species species 1 0 450734 Nocardioides dokdonensis 437 genus 2 4 0 1 116071 Micropruina 369 1 species 0 365 Micropruina glycogenica 75385 2 genus 0 14 Pimelobacter 1 2044 646 species 1 0 2045 Pimelobacter simplex 632 0 73 19 family 6686 Propionibacteriaceae 1 31957 0 4 2 genus Microlunatus 29404 1 445 0 1 species Microlunatus phosphovorus 29405 441 2012 1 72763 Tessaracoccus 17 0 genus 5 1 species 0 481 Tessaracoccus flavescens 399497 1332264 Tessaracoccus aquimaris 496 species 1 0 0 species 1 481 1610493 Tessaracoccus flavus 2635419 537 0 no rank 1 1909732 Tessaracoccus sp. T2.5-30 537 species 1 0 473 203133 genus 1 0 0 no rank 1 2633994 473 0 species 1 1871034 Propionimicrobium sp. Marseille-P3275 473 3 genus 0 44 1126 Propionibacterium 1 1743 no rank 1 0 2608905 207 Propionibacterium sp. oral taxon 193 671223 207 0 1 species 875 Propionibacterium freudenreichii 1744 0 1 species 2801844 397 0 1 genus 397 Pseudopropionibacterium propionicum 1750 1 species 0 1 1912215 Acidipropionibacterium 728 8 0 genus 2 720 1748 Acidipropionibacterium acidipropionici 0 species 1 0 16 4 genus Cutibacterium 1 1912216 1432 species 1 0 281 33011 Cutibacterium granulosum 0 1 species Cutibacterium avidum 33010 596 Cutibacterium acnes 1747 539 1 species 0 order 24 47 0 1 85004 Bifidobacteriales 53062 31953 1 Bifidobacteriaceae 53015 family 23 2964 0 0 1 genus 196082 457 1 species 0 Parascardovia denticolens 78258 457 2701 850 genus 1 0 species 1 0 2702 Gardnerella vaginalis 850 0 1 genus 379 196081 Scardovia inopinata 78259 379 0 1 species 48365 1 1678 Bifidobacterium genus 19 1041 0 1 species 0 870 Bifidobacterium pseudolongum 1694 0 1 species 883 Bifidobacterium thermophilum 33905 species 1 0 14652 216816 Bifidobacterium longum 538 1684 Bifidobacterium asteroides 0 species 1 Bifidobacterium adolescentis 1680 5938 1 species 0 418 Bifidobacterium indicum 1691 1 species 0 1669 Bifidobacterium pseudocatenulatum 28026 0 1 species 4618 Bifidobacterium breve 1685 0 1 species 1118 28025 Bifidobacterium animalis species 1 0 0 species 1 638619 Bifidobacterium actinocoloniiforme 359 Bifidobacterium scardovii 158787 921 0 1 species species 2 785 0 2135 1 1686 Bifidobacterium catenulatum 1350 630129 Bifidobacterium kashiwanohense 0 subspecies 1 Bifidobacterium angulatum 1683 1145 0 1 species 1689 Bifidobacterium dentium 972 species 1 0 0 species 1 9949 1681 Bifidobacterium bifidum 0 1 species 734 Bifidobacterium choerinum 35760 species 1 0 1687 Bifidobacterium coryneforme 405 0 246 31 class Coriobacteriia 1 84998 41874 Coriobacteriales 1 84999 22378 0 160 14 order 16133 84107 1 Coriobacteriaceae 131 0 family 6 13803 102106 1 Collinsella 46 0 genus 2 Collinsella aerofaciens 74426 13757 1 species 0 0 no rank 1 1392 84113 Coriobacteriaceae bacterium 68-1-3 1531429 1392 1 species 0 1 33870 Coriobacterium 807 genus 2 1 0 806 Coriobacterium glomerans 33871 1 species 0 6085 1 1643824 Atopobiaceae family 7 41 0 719 2767353 0 1 genus 719 1382 Atopobium parvulum species 1 0 0 1 genus 16 Atopobium 1380 5309 Olsenella 1 133925 4 genus 0 46 species 1 0 2381 1805478 Olsenella sp. Marseille-P2300 1330 2638792 1 no rank 0 0 species 1 712411 Olsenella sp. oral taxon 807 1330 1552 133926 Olsenella uli species 1 0 19250 Eggerthellales 1643822 1 16 order 0 288 1876 0 family 15 1643826 1 Eggerthellaceae 18962 1034 1981050 0 genus 1 0 1 species Phoenicibacter massiliensis 1944646 1034 2388 84108 1 Slackia 7 0 genus 2 0 species 1 2381 84110 Slackia heliotrinireducens 3 genus 0 22 Gordonibacter 644652 1 4615 Gordonibacter massiliensis 1841863 2117 1 species 0 1335613 Gordonibacter urolithinfaciens 2476 species 1 0 525 84162 0 1 genus 1 species 0 Cryptobacterium curtum 84163 525 0 3 2 genus Adlercreutzia 447020 1 2322 0 1 species 2319 Adlercreutzia equolifaciens 446660 2 genus 0 4 Denitrobacterium 1 79603 1424 1 species 0 1420 Denitrobacterium detoxificans 79604 97 0 genus 3 1 84111 Eggerthella 4778 84112 Eggerthella lenta 3358 0 species 1 1323 2648737 0 1 no rank 1 species 0 Eggerthella sp. YY7918 502558 1323 no rank 4 0 1752188 992 1 species 0 317 Actinobacteria bacterium IMCC19121 1848754 0 species 1 1848255 Actinobacteria bacterium IMCC25003 389 144 Actinobacteria bacterium IMCC26077 1848755 1 species 0 142 1848756 Actinobacteria bacterium IMCC26103 species 1 0 5 0 class 7 1209 84992 1 Acidimicrobiia Acidimicrobiales 1 84993 1204 6 order 0 15 953 2448023 family 2 0 Ilumatobacter 1 682522 953 2 genus 0 3 950 467094 Ilumatobacter coccineus species 1 0 Acidimicrobiaceae 84994 1 236 0 2 3 family Acidimicrobium 53634 1 234 2 genus 0 3 0 species 1 53635 Acidimicrobium ferrooxidans 231 1046 1497346 1 Thermoleophilia 3 0 class 5 17 0 order 4 588673 1 Solirubrobacterales 1043 0 7 3 family Conexibacteraceae 1 320583 1026 1019 191494 1 Conexibacter genus 2 10 0 0 1 species Conexibacter woesei 191495 1009 1297 12632 36 phylum 0 36 class 0 59 12632 Deinococci 188787 1 53 0 order 17 4676 1 68933 Thermales 188786 1 Thermaceae 4623 family 16 32 0 2 0 genus 2 186191 1 Marinithermus 480 species 1 0 478 186192 Marinithermus hydrothermalis 1 0 genus 2 1 208447 Oceanithermus 633 species 1 0 187137 Oceanithermus profundus 632 0 4 3 genus Meiothermus 65551 1 1078 Meiothermus ruber 277 559 0 1 species 0 1 species 515 Meiothermus silvanus 52022 2400 Thermus 270 1 8 genus 0 35 277 Thermus oshimai 56957 0 1 species 247 2619321 no rank 1 0 247 1111069 Thermus sp. CCB_US3_UF1 0 species 1 species 1 0 456163 Thermus parvatiensis 219 0 1 species Thermus brockianus 56956 189 species 1 0 37636 Thermus scotoductus 403 1 species 0 Thermus aquaticus 271 317 0 species 1 274 Thermus thermophilus 713 71 0 order 15 118964 1 Deinococcales 7304 21 0 family 14 7233 1 183710 Deinococcaceae genus 13 95 0 1298 1 Deinococcus 7212 493 68909 Deinococcus geothermalis species 1 0 0 species 1 55148 Deinococcus proteolyticus 464 Deinococcus maricopensis 309887 421 1 species 0 1299 Deinococcus radiodurans 739 0 species 1 1 species 0 561 Deinococcus deserti 310783 688 Deinococcus puniceus 1182568 1 species 0 1768108 Deinococcus actinosclerus 556 0 species 1 0 1 species Deinococcus swuensis 1182571 764 no rank 1 0 511 2623546 0 1 species 511 Deinococcus sp. NW-56 2080419 1 species 0 597 Deinococcus soli Cha et al. 2016 1309411 502394 Deinococcus gobiensis 772 species 1 0 551 Deinococcus peraridilitoris 432329 0 1 species 0 order 3 2762275 593 3 family 0 7 Trueperaceae 332247 1 593 Truepera 1 332248 586 2 genus 0 3 332249 Truepera radiovictrix 583 0 species 1 1 544448 Tenericutes 40836 phylum 101 1 0 713063 2280 2 no rank 0 species 1 0 1911683 Tenericutes bacterium MZ-XQ 1087 1193 1911684 Tenericutes bacterium MO-XQ species 1 0 2799557 1113 1 no rank 0 1912503 1113 0 genus 1 2624196 1113 1 no rank 0 1113 1541959 Candidatus Izimaplasma sp. HR1 species 1 0 Mollicutes 1 31969 37442 0 41 97 class 0 13 39 order 15801 Entomoplasmatales 186328 1 0 15 24 family 11108 Spiroplasmataceae 2131 1 genus 23 168 0 11093 1 2132 Spiroplasma 2133 Spiroplasma citri 515 species 1 0 species 1 0 590 216935 Spiroplasma culicicola 47834 Spiroplasma kunkelii 515 0 species 1 0 no rank 2 2637901 1224 612 Spiroplasma sp. NBRC 100390 1914410 1 species 0 1 species 0 Spiroplasma sp. TU-14 1898044 612 468 Spiroplasma cantharicola 362837 0 1 species 1 species 0 489 Spiroplasma apis 2137 216934 Spiroplasma corruscae 516 0 species 1 0 1 species 407 Spiroplasma chrysopicola 216933 1 species 0 399 Spiroplasma diminutum 216936 478 Spiroplasma litorale 216942 0 1 species 1 species 0 Spiroplasma sabaudiense 216944 298 468 Spiroplasma syrphidicola 216945 0 1 species species 1 0 421 315358 Spiroplasma eriocheiris 0 1 species Spiroplasma taiwanense 2145 634 1 species 0 Spiroplasma clarkii 2139 588 1 species 0 Spiroplasma monobiae 2136 428 Spiroplasma atrichopogonis 1114980 427 1 species 0 1 species 0 Spiroplasma floricola 216937 522 423 2144 Spiroplasma mirum 0 species 1 1 species 0 Spiroplasma helicoides 216938 580 535 216946 Spiroplasma turonicum 0 species 1 4680 Entomoplasmataceae 1 33925 0 11 14 family 0 104 8 genus 3276 Mesoplasma 1 46239 species 1 0 138853 Mesoplasma lactucae 507 species 1 0 216427 Mesoplasma chauliocola 288 Mesoplasma tabanidae 219745 517 1 species 0 0 1 species 346 Mesoplasma entomophilum 2149 380 Mesoplasma coleopterae 324078 1 species 0 species 1 0 233 225999 Mesoplasma syrphidae Mesoplasma florum 2151 901 0 1 species 0 4 5 genus 1393 Entomoplasma 1 46238 0 1 species Entomoplasma somnilux 215578 363 363 Entomoplasma luminosum 214888 1 species 0 74700 Entomoplasma freundtii 170 species 1 0 81459 Entomoplasma melaleucae 493 0 species 1 0 29 13 order Acholeplasmatales 1 186329 5234 0 24 12 family Acholeplasmataceae 1 2146 5205 6 genus 0 16 Candidatus Phytoplasma 33926 1 1495 244 85630 species group 1 0 244 Candidatus Phytoplasma mali 37692 1 species 0 1 species group 0 85632 359 359 59748 Candidatus Phytoplasma australiense 0 species 1 0 3 species group 85620 876 0 species 1 229545 Aster yellows witches'-broom phytoplasma 264 0 1 species 357 Onion yellows phytoplasma 100379 255 202462 Maize bushy stunt phytoplasma 0 species 1 5 genus 0 28 3686 Acholeplasma 1 2147 35623 Acholeplasma oculi 860 0 species 1 species 1 0 38986 Acholeplasma palmae 1358 580 Acholeplasma brassicae 61635 0 1 species 2148 Acholeplasma laidlawii 860 species 1 0 Mycoplasmatales 2085 1 16366 44 order 0 36 16330 1 2092 Mycoplasmataceae family 43 50 0 0 genus 12 5722 2767358 441 2115 Mycoplasma fermentans 0 species 1 0 1 species 501 Mycoplasma arginini 2094 0 species 1 449 2112 Mycoplasma bovigenitalium 295 29553 Mycoplasma bovirhinis 0 species 1 2113 Mycoplasma californicum 208 species 1 0 Mycoplasma pulmonis 2107 430 1 species 0 0 1 species Mycoplasma synoviae 2109 274 1 species 0 343 Mycoplasma canis 29555 525 171284 Mycoplasma cynos 0 species 1 0 species 1 224 48003 Mycoplasma pullorum 1549 28903 Mycoplasma bovis species 1 0 2110 Mycoplasma agalactiae 483 species 1 0 98 0 genus 27 9362 2093 1 Mycoplasma species 1 0 65123 Mycoplasma wenyonii 80 2104 Mycoplasma pneumoniae 185 0 species 1 130 86660 Mycoplasma dispar species 1 0 29501 Mycoplasma haemofelis 155 0 species 1 0 species 1 2111 Mycoplasma arthritidis 338 720 Mycoplasma mobile 2118 0 1 species 278 2123 Mycoplasma putrefaciens 0 species 1 no rank 1 0 357 2683645 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 357 0 1 species 1 species 0 115 Mycoplasma suis 57372 Mycoplasma crocodyli 50052 355 1 species 0 656088 2527 3 species group 0 Mycoplasma mycoides 2102 1054 0 1 species 0 1 species Mycoplasma leachii 2105 566 907 2095 Mycoplasma capricolum 0 species 1 174 2097 Mycoplasma genitalium 0 species 1 0 species 1 2128 Mycoplasma flocculare 205 0 1 species Mycoplasma haemocanis 136241 104 170 Mycoplasma parvum 984991 0 1 species 0 species 1 277 2099 Mycoplasma hyopneumoniae 51365 Mycoplasma yeatsii 506 species 1 0 Mycoplasma ovis 171632 36 1 species 0 0 1 species 336 Mycoplasma gallisepticum 2096 0 species 1 45362 Mycoplasma bovoculi 375 1 species 0 Mycoplasma hyorhinis 2100 279 1 species 0 Mycoplasma penetrans 28227 578 2098 Mycoplasma hominis 693 0 species 1 1 species 0 291 Mycoplasma canadense 29554 genus 3 1 0 1196 1 2129 Ureaplasma Ureaplasma urealyticum 2130 725 1 species 0 0 species 1 470 134821 Ureaplasma parvum Firmicutes 1 1239 2441718 720 phylum 0 123 433 class 0 338 434570 Bacilli 1 91061 0 361 268 order Bacillales 1385 1 250239 family 2 1 0 932 1 186821 Sporolactobacillaceae 931 663587 0 1 no rank 1 species 0 931 [Bacillus] selenitireducens 85683 4685 539002 0 no rank 9 0 2 no rank 539738 1089 genus 2 3 0 1378 1 Gemella 1089 0 1 no rank 2624949 1086 1785995 Gemella sp. oral taxon 928 1086 species 1 0 0 7 no rank 539742 3596 Exiguobacterium 33986 1 3596 0 76 7 genus 0 1 species 398 Exiguobacterium sibiricum 332410 1 species 0 Exiguobacterium antarcticum 132920 504 no rank 4 0 2618 2644629 731 1224749 Exiguobacterium sp. ZWU0009 0 species 1 0 1 species Exiguobacterium sp. MH3 1399115 582 565 360911 Exiguobacterium sp. AT1b species 1 0 740 1849031 Exiguobacterium sp. U13-1 species 1 0 279 0 family 121 186817 1 Bacillaceae 119025 2028 1 182709 Oceanobacillus genus 2 1 0 Oceanobacillus iheyensis 182710 2027 0 1 species 2 genus 0 2632 2675230 Bacillus kochii 859143 1311 0 1 species 0 species 1 665099 Bacillus oceanisediminis 1321 3 genus 0 3 2133 Fictibacillus 1 1329200 1221500 Fictibacillus phosphorivorans 1080 species 1 0 Fictibacillus arsenicus 255247 1050 0 1 species 1111 Lentibacillus 1 175304 0 4 2 genus 1107 Lentibacillus amyloliquefaciens 1472767 1 species 0 Lysinibacillus 1 400634 6192 5 genus 0 48 1 no rank 0 1271 2636778 Lysinibacillus sp. YS11 2072025 1271 1 species 0 0 species 1 952 28031 Lysinibacillus fusiformis 1 species 0 Lysinibacillus varians 1145276 1253 Lysinibacillus sphaericus 1421 2668 0 1 species 2 0 genus 3 1 45667 Halobacillus 1592 Halobacillus mangrovi 402384 823 1 species 0 1 species 0 767 Halobacillus halophilus 1570 Salimicrobium 351195 1 552 0 2 2 genus 550 1230341 Salimicrobium jeotgali species 1 0 0 2 genus 2675229 3014 0 species 1 784 264697 Bacillus muralis species 1 0 2230 1478 Bacillus simplex genus 5 0 5507 2675234 0 species 1 300825 Bacillus lehensis 1025 1 species 0 779 Bacillus halodurans 86665 0 species 1 79885 Bacillus pseudofirmus 1043 79880 Bacillus clausii 1358 species 1 0 species 1 0 1302 199441 Bacillus krulwichiae 71370 1 1386 Bacillus 1878 0 genus 58 1 species group 0 1792192 910 0 species 1 910 293387 Bacillus altitudinis 79883 Bacillus horikoshii 880 0 species 1 Bacillus flexus 86664 1075 1 species 0 119 79881 Bacillus gibsonii 0 species 1 0 9 species group 653685 10845 1 species 0 Bacillus sonorensis 119858 844 Bacillus paralicheniformis 1648923 743 1 species 0 87 72361 Bacillus vallismortis 0 species 1 0 1 species 748 Bacillus atrophaeus 1452 745 1402 Bacillus licheniformis species 1 0 1 species 0 Bacillus subtilis 1423 4371 1938374 3307 0 3 species subgroup 1167 492670 Bacillus velezensis 0 species 1 Bacillus siamensis 659243 492 0 1 species 1390 Bacillus amyloliquefaciens 1648 0 species 1 species 1 0 697 1479 Bacillus smithii Bacillus beveridgei 632773 539 0 1 species Bacillus endophyticus 135735 1736 0 1 species 1 species 0 1296 Bacillus aryabhattai 412384 1 species 0 878 Bacillus cellulosilyticus 1413 0 species group 10 26597 86661 1392 Bacillus anthracis 627 species 1 0 2750818 3104 0 no rank 3 species 1 0 1839798 Bacillus sp. FDAARGOS_235 1248 0 1 species Bacillus sp. ABP14 1892404 1160 Bacillus sp. HBCD-sjtu 2053832 696 0 1 species 0 1 species Bacillus toyonensis 155322 928 Bacillus cytotoxicus 580165 1209 0 1 species 0 species 1 8324 1396 Bacillus cereus 1 species 0 8084 Bacillus thuringiensis 1428 0 1 species 3567 Bacillus mycoides 1405 1 species 0 Bacillus bombysepticus 658666 754 Bacillus safensis 561879 1602 1 species 0 1404 Bacillus megaterium 3540 0 species 1 1471 Bacillus methanolicus 763 species 1 0 1664069 Bacillus glycinifermentans 1094 species 1 0 934 Bacillus weihaiensis 1547283 1 species 0 563 1178537 Bacillus xiamenensis species 1 0 3210 Bacillus pumilus 1408 0 1 species 0 1 species Bacillus coagulans 1398 2119 Bacillus cohnii 33932 895 0 1 species 832 Bacillus infantis 324767 0 1 species 19 no rank 0 8368 185979 1 species 0 336 Bacillus sp. 275 1941347 0 species 1 325 2009331 Bacillus sp. MD-5 1 species 0 142 Bacillus sp. LM 4-2 1628753 344 Bacillus sp. SJ-10 563169 0 1 species species 1 0 981 1565991 Bacillus sp. X1(2014) 508 Bacillus sp. OxB-1 98228 1 species 0 1 species 0 Bacillus sp. SDLI1 1774743 523 0 1 species Bacillus sp. BH072 1570330 108 600 Bacillus sp. WP8 756828 0 1 species 677 1837130 Bacillus sp. FJAT-14266 0 species 1 0 species 1 1030 1827146 Bacillus sp. IHB B 7164 0 1 species 72 Bacillus sp. Lzh-5 2049935 0 1 species Bacillus sp. 1s-1 2026248 468 Bacillus sp. YP1 1574141 151 0 1 species 468 1856406 Bacillus sp. H15-1 0 species 1 1409 Bacillus sp. (in: Bacteria) 182 species 1 0 0 species 1 1446792 Bacillus sp. Pc3 305 Bacillus sp. 1NLA3E 666686 876 0 1 species 1 species 0 272 Bacillus sp. JS 1127744 2 genus 0 9 Parageobacillus 1 1906945 829 1426 Parageobacillus thermoglucosidasius 820 species 1 0 84406 1 Virgibacillus 6463 9 0 genus 7 0 1 species 1029 Virgibacillus pantothenticus 1473 2036 2620237 0 2 no rank 844 Virgibacillus sp. SK37 403957 1 species 0 0 species 1 1192 1911587 Virgibacillus sp. 6R 163877 Virgibacillus necropolis 1208 0 species 1 2017483 Virgibacillus phasianinus 776 species 1 0 1482 Virgibacillus halodenitrificans 1405 species 1 0 2 0 genus 2 29331 1 Amphibacillus 1653 1651 Amphibacillus xylanus 1449 1 species 0 2 genus 0 2 Aeribacillus 1055323 1 1361 Aeribacillus pallidus 33936 1359 1 species 0 445 0 genus 15 7997 129337 1 Geobacillus 2155 1505648 0 4 species group 1 species 0 326 Geobacillus thermocatenulatus 33938 1 species 0 718 Geobacillus lituanicus 169283 1462 Geobacillus kaustophilus 181 species 1 0 930 Geobacillus thermoleovorans 33941 0 1 species 458 1921421 Geobacillus genomosp. 3 species 1 0 129338 Geobacillus subterraneus 344 species 1 0 1 species 0 Geobacillus thermodenitrificans 33940 690 0 species 1 1422 Geobacillus stearothermophilus 931 0 no rank 6 2974 2642459 0 species 1 483 544556 Geobacillus sp. Y412MC61 Geobacillus sp. C56-T3 691437 356 0 1 species 1 species 0 637 Geobacillus sp. Y4.1MC1 581103 470 1233873 Geobacillus sp. GHH01 0 species 1 484 Geobacillus sp. Y412MC52 550542 0 1 species 544 Geobacillus sp. WCH70 471223 1 species 0 2 0 genus 2 459532 1 Terribacillus 888 species 1 0 886 586416 Terribacillus aidingensis 9 0 genus 6 150247 1 Anoxybacillus 3424 2 no rank 0 2639704 1258 Anoxybacillus sp. B2M1 1490052 607 1 species 0 0 species 1 651 1490057 Anoxybacillus sp. B7M1 1 species 0 884 Anoxybacillus flavithermus 33934 1 species 0 806 Anoxybacillus amylolyticus 294699 1 species 0 467 Anoxybacillus gonensis 198467 Listeriaceae 1 186820 7979 8 family 0 37 36 0 genus 6 1637 1 Listeria 7079 2604 1639 Listeria monocytogenes 0 species 1 968 1643 Listeria welshimeri 0 species 1 0 species 1 1640 Listeria seeligeri 812 1 species 0 Listeria innocua 1642 1090 1569 1638 Listeria ivanovii species 1 0 863 2755 1 genus 0 0 1 species Brochothrix thermosphacta 2756 863 186824 1 Thermoactinomycetaceae 1001 14 0 family 4 20 0 genus 2 1 1677050 Novibacillus 984 species 1 0 1471761 Novibacillus thermophilus 964 3 Laceyella 292635 1 genus 0 0 23 9 family Alicyclobacillaceae 186823 1 3771 1876 Tumebacillus 1 432330 0 13 3 genus 1 species 0 1196 Tumebacillus avium 1903704 1214604 Tumebacillus algifaecis 667 species 1 0 976 Alicyclobacillus 29330 1 2 genus 0 9 species 1 0 967 405212 Alicyclobacillus acidocaldarius 6 0 genus 3 896 1 1129704 Kyrpidia 441 33943 Kyrpidia tusciae 0 species 1 449 2055160 Kyrpidia sp. EA-1 0 species 1 89 0 family 46 186822 1 Paenibacillaceae 54653 85151 1602 no rank 3 0 3 genus 0 3 1602 Aneurinibacillus 1 55079 1500254 Aneurinibacillus soli 835 0 species 1 764 2642329 no rank 1 0 0 species 1 1450761 Aneurinibacillus sp. XH2 764 47550 1 44249 Paenibacillus 541 0 genus 36 0 species 1 1002 1464 Paenibacillus larvae Paenibacillus graminis 189425 1675 1 species 0 160799 Paenibacillus borealis 1983 species 1 0 15980 185978 0 no rank 13 1376 1536773 Paenibacillus sp. FSL R7-0331 0 species 1 1 species 0 1252 Paenibacillus sp. BIHB4019 1870819 1566358 Paenibacillus sp. IHBB 10380 875 species 1 0 0 species 1 1027 1536770 Paenibacillus sp. FSL R5-0345 1310 1536774 Paenibacillus sp. FSL H7-0357 species 1 0 1695218 Paenibacillus sp. 32O-W 884 0 species 1 1564 1536772 Paenibacillus sp. FSL R7-0273 0 species 1 1 species 0 Paenibacillus sp. FSL H7-0737 1536775 1191 Paenibacillus sp. Y412MC10 481743 936 0 1 species 1734 Paenibacillus sp. FSL R5-0912 1536771 0 1 species Paenibacillus sp. FSL P4-0081 1536769 1494 0 1 species 0 1 species Paenibacillus sp. lzh-N1 2069255 834 0 1 species 1503 Paenibacillus sp. JDR-2 324057 0 1 species 1551 Paenibacillus stellifer 169760 0 1 species 1360 Paenibacillus yonginensis 1462996 0 1 species group 2014 2044880 0 species 1 483937 Paenibacillus riograndensis 2014 1814 Paenibacillus durus 44251 0 1 species 1 species 0 Paenibacillus bovis 1616788 1540 0 species 1 59893 Paenibacillus peoriae 1025 0 1 species 1029 Paenibacillus crassostreae 1763538 1 species 0 1260 Paenibacillus xylanexedens 528191 0 species 1 172713 Paenibacillus kribbensis 895 61624 Paenibacillus mucilaginosus 1918 0 species 1 species 1 0 895 1126833 Paenibacillus beijingensis 0 1 species 1248 Paenibacillus sabinae 365617 0 species 1 1406 Paenibacillus polymyxa 3846 species 1 0 414771 Paenibacillus donghaensis 1456 species 1 0 1129 189426 Paenibacillus odorifer 789 162209 Paenibacillus naphthalenovorans species 1 0 1 species 0 1186 Paenibacillus ihbetae 1870820 1178515 Paenibacillus swuensis 583 species 1 0 831 159743 Paenibacillus terrae 0 species 1 0 31 4 genus 3982 Brevibacillus 55080 1 1274 1393 Brevibacillus brevis 0 species 1 0 1 species 796 Brevibacillus formosus 54913 Brevibacillus laterosporus 1465 1881 0 1 species 1430 Thermobacillus 1 76632 0 4 2 genus 1426 Thermobacillus composti 377615 0 1 species 39786 1 90964 Staphylococcaceae family 41 738 0 Macrococcus 1 69965 2551 0 25 4 genus 2619255 1083 1 no rank 0 1898474 Macrococcus sp. IME1552 1083 species 1 0 1 species 0 816 Macrococcus caseolyticus 69966 627 Macrococcus canis 1855823 1 species 0 35309 1 1279 Staphylococcus genus 33 607 0 0 no rank 1 1101 91994 0 1 species 1101 Staphylococcus sp. AntiMn-1 1715860 2230 1282 Staphylococcus epidermidis 0 species 1 1 species 0 Staphylococcus hominis 1290 799 Staphylococcus hyicus 1284 462 1 species 0 29382 Staphylococcus cohnii 864 species 1 0 0 1 species 1366 Staphylococcus sciuri 1296 Staphylococcus saprophyticus 29385 1104 0 1 species 652 61015 Staphylococcus succinus species 1 0 1 species 0 4272 Staphylococcus aureus 1280 0 1 species 406 Staphylococcus muscae 1294 155085 Staphylococcus lutrae 377 species 1 0 0 species 1 758 1295 Staphylococcus schleiferi species 1 0 915 214473 Staphylococcus nepalensis 949 70255 Staphylococcus condimenti species 1 0 0 1 species 962 Staphylococcus warneri 1292 species 1 0 170573 Staphylococcus pettenkoferi 554 0 species 1 1908 45972 Staphylococcus pasteuri 0 1 species Staphylococcus agnetis 985762 777 283734 Staphylococcus pseudintermedius 1167 0 species 1 Staphylococcus capitis 29388 839 1 species 0 Staphylococcus argenteus 985002 1129 1 species 0 28035 Staphylococcus lugdunensis 724 0 species 1 1061 Staphylococcus simiae 308354 1 species 0 1406 1288 Staphylococcus xylosus 0 species 1 species 1 0 1286 Staphylococcus simulans 892 0 1 species Staphylococcus felis 46127 700 1 species 0 Staphylococcus stepanovicii 643214 1042 0 1 species 1286 Staphylococcus equorum 246432 1 species 0 947 Staphylococcus carnosus 1281 species 1 0 70258 Staphylococcus piscifermentans 820 0 species 1 910 29384 Staphylococcus kloosii 1323 Staphylococcus haemolyticus 1283 1 species 0 621 Salinicoccus 1 45669 0 2 2 genus 0 species 1 407035 Salinicoccus halodurans 619 genus 1 0 2005363 567 species 1 0 567 1849491 Auricoccus indicus Planococcaceae 186818 1 18046 0 52 27 family 6924 Planococcus 1 1372 0 70 12 genus 0 species 1 192421 Planococcus maritimus 1007 756 Planococcus kocurii 1374 1 species 0 species 1 0 1038856 Planococcus plakortidis 505 Planococcus halocryophilus 1215089 697 1 species 0 0 species 1 1598147 Planococcus faecalis 728 611 Planococcus donghaensis 414778 1 species 0 2662419 1003 0 no rank 2 0 1 species 456 Planococcus sp. MB-3u-03 2058136 1 species 0 547 Planococcus sp. PAMC 21323 1526927 species 1 0 1302659 Planococcus sp. L10.15 580 473 Planococcus antarcticus 161360 0 1 species 0 1 species 494 Planococcus rifietoensis 200991 2723 Solibacillus 1 648800 3 genus 0 13 1846 Solibacillus silvestris 76853 0 1 species 2637870 864 0 1 no rank 864 Solibacillus sp. R5-41 2048654 0 1 species 0 2 2 genus Jeotgalibacillus 1 157226 995 993 Jeotgalibacillus malaysiensis 1508404 0 1 species 1 1649 Kurthia 1472 3 0 genus 2 0 1 no rank 2644826 1469 Kurthia sp. 11kri321 1750719 1469 0 1 species genus 2 2 0 1177 1 648802 Rummeliibacillus 0 species 1 241244 Rummeliibacillus stabekisii 1175 5 genus 0 35 Sporosarcina 1569 1 4703 2647733 1768 0 no rank 2 Sporosarcina sp. P33 1930764 894 0 1 species 1930546 Sporosarcina sp. P37 874 species 1 0 0 1 species Sporosarcina ureae 1571 2000 0 species 1 1476 Sporosarcina psychrophila 900 183993 1 186826 Lactobacillales order 164 2671 0 26806 Enterococcaceae 81852 1 19 family 0 25 927 0 genus 12 1 1350 Enterococcus 21912 1 species 0 971 Enterococcus thailandicus 417368 1 species 0 9226 Enterococcus faecium 1352 0 species 1 37734 Enterococcus casseliflavus 737 species 1 0 3538 1351 Enterococcus faecalis 0 no rank 3 2138 2608891 species 1 0 2060306 Enterococcus sp. FDAARGOS_163 593 2060307 Enterococcus sp. FDAARGOS_375 827 species 1 0 718 Enterococcus sp. CR-Ec1 2057791 1 species 0 973 Enterococcus durans 53345 1 species 0 1122 53346 Enterococcus mundtii species 1 0 1354 Enterococcus hirae 1102 0 species 1 0 species 1 1178 2005703 Enterococcus wangshanyuanii 2 genus 0 2 Tetragenococcus 1 51668 1328 species 1 0 51669 Tetragenococcus halophilus 1326 1400 33969 genus 1 0 1 species 0 Melissococcus plutonius 33970 1400 2141 1 2737 Vagococcus genus 3 12 0 1176 Vagococcus penaei 633807 0 1 species 953 519472 Vagococcus teuberi species 1 0 7081 Leuconostocaceae 1 81850 0 7 17 family 0 13 6 genus Weissella 46255 1 1974 488 Weissella cibaria 137591 1 species 0 1 species 0 245 Weissella jogaejeotgali 1631871 350 Weissella ceti 759620 0 1 species 455 165096 Weissella koreensis species 1 0 423 Weissella paramesenteroides 1249 1 species 0 0 1 genus 46254 611 0 1 species Oenococcus oeni 1247 611 4489 Leuconostoc 1 1243 0 65 9 genus species 1 0 631 1244 Leuconostoc gelidum 136609 Leuconostoc kimchii 630 0 species 1 0 species 1 33964 Leuconostoc citreum 364 286 255248 Leuconostoc garlicum species 1 0 1 species 0 Leuconostoc mesenteroides 1245 948 1 species 0 Leuconostoc carnosum 1252 526 602 2685106 no rank 1 0 602 979982 Leuconostoc sp. C2 species 1 0 437 Leuconostoc lactis 1246 0 1 species 33958 1 Lactobacillaceae 51497 family 58 69 0 1262 2767885 genus 2 0 Lactobacillus curvatus 28038 634 0 1 species Lactobacillus sakei 1599 628 1 species 0 2129 2767842 genus 3 0 257 Lactobacillus paraplantarum 60520 0 1 species Lactobacillus plantarum 1590 1183 1 species 0 species 1 0 689 1589 Lactobacillus pentosus 0 genus 3 2518 2767893 152331 Lactobacillus parabuchneri 963 0 species 1 0 species 1 845 1138822 Lactobacillus curieae 1581 Lactobacillus buchneri 710 0 species 1 0 genus 1 660 2767892 660 240427 Lactobacillus paracollinoides 0 species 1 genus 2 0 2767881 839 Lactobacillus sanfranciscensis 1625 370 1 species 0 species 1 0 469 53444 Lactobacillus lindneri 0 genus 6 2767879 4841 species 1 0 873 1612 Lactobacillus farciminis 571 1074467 Lactobacillus heilongjiangensis 0 species 1 1847728 Lactobacillus allii 888 0 species 1 942 Lactobacillus ginsenosidimutans 1007676 0 1 species 1 species 0 Lactobacillus crustorum 392416 700 867 Lactobacillus alimentarius 1602 1 species 0 1059 2767889 2 genus 0 Lactobacillus backii 375175 555 0 1 species 504 1610 Lactobacillus coryniformis species 1 0 8237 2767887 0 genus 4 0 1 species Lactobacillus agilis 1601 1083 Lactobacillus salivarius 1624 3183 1 species 0 species 1 0 3315 1623 Lactobacillus ruminis 0 1 species 656 Lactobacillus acidipiscis 89059 3 genus 0 2742598 2898 species 1 0 1598 Lactobacillus reuteri 1538 1613 Lactobacillus fermentum 405 species 1 0 955 Lactobacillus mucosae 97478 0 1 species genus 6 40 0 1 1253 Pediococcus 3658 0 1 species Pediococcus damnosus 51663 533 0 species group 1 661 1670797 0 1 species Pediococcus acidilactici 1254 661 520 187452 Pediococcus claussenii 0 species 1 Pediococcus inopinatus 114090 577 0 1 species 1255 Pediococcus pentosaceus 1327 0 species 1 2767890 616 0 genus 1 1193095 Lactobacillus hokkaidonensis 616 species 1 0 16 genus 0 710 17342 Lactobacillus 1578 1 species 1 0 1600 Lactobacillus acetotolerans 655 Lactobacillus helveticus 1587 1626 1 species 0 1 species 0 Lactobacillus kefiranofaciens 267818 1182 0 species 1 109790 Lactobacillus jensenii 749 2890 33959 Lactobacillus johnsonii species 1 0 0 species 1 1227 1584 Lactobacillus delbrueckii 1596 Lactobacillus gasseri 1443 0 species 1 0 species 1 1427 1579 Lactobacillus acidophilus 1 species 0 Lactobacillus amylolyticus 83683 646 1 species 0 2180 Lactobacillus amylovorus 1604 no rank 4 0 2620435 1774 0 species 1 292 2108362 Lactobacillus sp. D1501 0 1 species 491 Lactobacillus sp. CBA3605 2099788 2099789 Lactobacillus sp. CBA3606 436 0 species 1 555 Lactobacillus sp. wkB8 1545702 0 1 species 833 52242 Lactobacillus gallinarum 0 species 1 0 1 genus 594 2767877 1 species 0 594 Lactobacillus kunkeei 148814 0 1 genus 866 2767876 species 1 0 1603 Lactobacillus amylophilus 866 0 3 genus 2759736 2909 1 species 0 Lactobacillus rhamnosus 47715 888 Lactobacillus casei 1582 1191 1 species 0 species 1 0 830 1597 Lactobacillus paracasei 2767886 1000 3 genus 0 226 267363 Lactobacillus zymae 0 species 1 0 1 species Lactobacillus brevis 1580 565 637971 Lactobacillus koreensis 209 0 species 1 1300 1 Streptococcaceae 84834 family 49 899 0 genus 5 5 0 6582 1 1357 Lactococcus 1358 Lactococcus lactis 4270 0 species 1 1 species 0 Lactococcus piscium 1364 637 Lactococcus raffinolactis 1366 780 1 species 0 890 Lactococcus garvieae 1363 1 species 0 3202 0 genus 43 1301 1 Streptococcus 77353 Streptococcus parauberis 1348 958 0 1 species 0 species 1 1307 Streptococcus suis 10643 0 2 species group 119603 2547 1336 Streptococcus equi 1360 0 species 1 Streptococcus dysgalactiae 1334 1187 1 species 0 1349 Streptococcus uberis 910 0 species 1 1296 Streptococcus iniae 1346 0 1 species Streptococcus parasanguinis 1318 1122 0 1 species species 1 0 1314 Streptococcus pyogenes 1916 species 1 0 197614 Streptococcus pasteurianus 1460 species 1 0 257758 Streptococcus pseudopneumoniae 529 1289 1309 Streptococcus mutans 0 species 1 2925 315405 Streptococcus gallolyticus species 1 0 Streptococcus salivarius 1304 3437 1 species 0 Streptococcus marmotae 1825069 521 0 1 species 671232 12009 0 species group 3 3272 Streptococcus constellatus 76860 1 species 0 species 1 0 1338 Streptococcus intermedius 1662 1 species 0 7075 Streptococcus anginosus 1328 1 species 0 Streptococcus infantarius 102684 2357 0 species 1 630 1814128 Streptococcus halotolerans 0 1 species 646 Streptococcus cristatus 45634 1308 Streptococcus thermophilus 2066 species 1 0 614 1305 Streptococcus sanguinis species 1 0 1 species 0 1838 Streptococcus lutetiensis 150055 400 Streptococcus himalayensis 1888195 0 1 species 0 1 species 1591 Streptococcus gordonii 1302 Streptococcus pantholopis 1811193 534 0 1 species species 1 0 5413 1311 Streptococcus agalactiae 0 species 1 1303 Streptococcus oralis 2326 Streptococcus macedonicus 59310 645 0 1 species 0 species 1 609 1335 Streptococcus equinus 1 species 0 1506 Streptococcus acidominimus 1326 Streptococcus merionis 400065 651 0 1 species 1505 1313 Streptococcus pneumoniae species 1 0 552 Streptococcus pluranimalium 82348 1 species 0 2608887 5396 0 no rank 7 1319 Streptococcus sp. 'group B' 806 species 1 0 790 1902136 Streptococcus sp. NPS 308 species 1 0 Streptococcus sp. I-P16 1156433 702 0 1 species species 1 0 1322 1839799 Streptococcus sp. FDAARGOS_192 0 1 species 807 Streptococcus sp. I-G2 1156431 712633 Streptococcus sp. oral taxon 431 543 species 1 0 0 1 species 426 Streptococcus sp. A12 1759399 3310 28037 Streptococcus mitis 0 species 1 760 263855 0 no rank 1 1993866 Lactobacillales bacterium 760 0 species 1 0 21 11 family 5626 Carnobacteriaceae 186828 1 2 genus 0 1 874 Marinilactibacillus 191769 1 no rank 1 0 2632303 873 1911586 Marinilactibacillus sp. 15R 873 species 1 0 Carnobacterium 1 2747 3508 5 genus 0 4 0 species 1 787 147709 Carnobacterium inhibens 2751 Carnobacterium maltaromaticum 1113 0 species 1 no rank 2 0 257487 1604 Carnobacterium sp. 17-4 208596 967 0 1 species 637 Carnobacterium sp. CP1 1564681 0 1 species 3 genus 0 1 Jeotgalibaca 1470540 1 1223 0 species 1 708126 Jeotgalibaca dankookensis 535 687 2621505 1 no rank 0 0 species 1 1903686 Jeotgalibaca sp. PTS2502 687 1 186827 Aerococcaceae 4718 family 8 4 0 1375 1 Aerococcus 4714 66 0 genus 7 1015 Aerococcus christensenii 87541 0 1 species 128944 Aerococcus urinaehominis 503 0 species 1 Aerococcus urinaeequi 51665 1002 0 1 species 0 1 species 734 Aerococcus sanguinicola 119206 1 species 0 717 Aerococcus viridans 1377 0 species 1 1376 Aerococcus urinae 677 0 135 217 class 1811059 Clostridia 186801 1 0 3 order 1752 2770089 1 family 0 1348 2770092 1 genus 0 499228 1348 499229 Tepidanaerobacter acetatoxydans 1348 0 species 1 0 family 2 2770093 404 Thermosediminibacter 1 291988 404 0 1 2 genus 0 species 1 291990 Thermosediminibacter oceani 403 838 1 485256 Natranaerobiales 3 0 order 4 4 0 family 3 485255 1 Natranaerobiaceae 835 0 10 2 genus Natranaerobius 375928 1 831 Natranaerobius thermophilus 375929 821 1 species 0 1778090 Clostridiales 186802 1 162 order 0 3759 10 no rank 0 538999 64305 37822 Intestinimonas 1 1392389 0 276 2 genus species 1 0 37546 1297617 Intestinimonas butyriciproducens Clostridiales Family XIII. Incertae Sedis 543314 1 3612 4 family 0 3 1694 Mogibacterium 86331 1 0 6 2 genus species 1 0 114527 Mogibacterium diversum 1688 1915 143393 [Eubacterium] sulci species 1 0 2717089 21783 1 genus 0 0 species 1 21783 2086584 Mordavella sp. Marseille-P3756 Clostridiales Family XVII. Incertae Sedis 539000 1 1088 0 3 3 family 1085 Thermaerobacter 73918 1 2 genus 0 6 species 1 0 1079 73919 Thermaerobacter marianensis 40459 186804 1 Peptostreptococcaceae family 11 435 0 0 1 no rank 1411023 1062 Peptostreptococcaceae bacterium oral taxon 929 2081703 1062 0 1 species 8 0 genus 2 44259 1 Filifactor 1336 0 species 1 1328 143361 Filifactor alocis 2 genus 0 112 31690 Clostridioides 1 1870884 1496 Clostridioides difficile 31578 species 1 0 1 genus 0 1481960 1754 1754 1731 Peptoclostridium acidaminophilum species 1 0 1372 Acetoanaerobium 1 186831 0 14 2 genus 1511 Acetoanaerobium sticklandii 1358 0 species 1 1 1849828 Paeniclostridium 2810 genus 2 4 0 species 1 0 1505 Paeniclostridium sordellii 2806 family 27 812 0 1 186803 Lachnospiraceae 774084 60323 2569097 0 genus 1 species 1 0 39488 [Eubacterium] hallii 60323 9 0 genus 2 1 698776 Cellulosilyticum 3729 29360 Cellulosilyticum lentocellum 3720 species 1 0 3 genus 0 32 44718 Blautia 572511 1 0 1 species Blautia hansenii 1322 26495 18191 2648079 1 no rank 0 1 species 0 Blautia sp. YL58 1796616 18191 1 830 Butyrivibrio 16045 184 0 genus 3 species 1 0 185008 Butyrivibrio hungatei 7571 1 species 0 Butyrivibrio proteoclasticus 43305 8290 113307 28050 0 1 genus 1 species 0 113307 [Eubacterium] eligens 39485 35361 2719313 genus 1 0 species 1 0 208479 [Clostridium] bolteae 35361 genus 2 17 0 132842 1 841 Roseburia 1 species 0 132825 Roseburia hominis 301301 227774 186928 0 2 no rank 712991 Lachnospiraceae bacterium oral taxon 500 6771 species 1 0 0 1 species 221003 [Eubacterium] rectale 39491 Anaerostipes 207244 1 58975 0 87 2 genus 58888 649756 Anaerostipes hadrus 0 species 1 Herbinix 1663717 1 4210 0 3 2 genus 4207 1679721 Herbinix luporum species 1 0 0 1 genus 2719231 19342 [Clostridium] saccharolyticum 84030 19342 0 1 species Anaerotignum 1 2039240 4335 2 genus 0 1 0 species 1 4334 28446 Anaerotignum propionicum genus 4 147 0 1 1506553 Lachnoclostridium 52311 20220 2608895 no rank 1 0 1 species 0 Lachnoclostridium sp. YL32 1834196 20220 0 species 1 6026 66219 Lachnoclostridium phytofermentans species 1 0 25918 1871021 Lachnoclostridium phocaeense 672278 Ruminococcaceae 541000 1 12 family 0 185 4213 2305133 no rank 1 0 0 species 1 4213 1572656 Ruminococcaceae bacterium CPB6 0 81 3 genus Ruminococcus 1263 1 253694 Ruminococcus albus 1264 7057 0 1 species 0 species 1 1160721 Ruminococcus bicirculans 246556 6 0 genus 2 4468 1 253238 Ethanoligenens 0 1 species 4462 Ethanoligenens harbinense 253239 no rank 1 0 2637 552397 2637 29343 [Clostridium] cellulosi species 1 0 Flavonifractor 946234 1 29689 0 27 2 genus Flavonifractor plautii 292800 29662 1 species 0 1 216851 Faecalibacterium 377392 genus 2 277 0 Faecalibacterium prausnitzii 853 377115 0 1 species 31984 1 Heliobacteriaceae 1541 18 0 family 3 2 genus 0 25 Heliobacterium 2697 1 1523 0 1 species Heliobacterium modesticaldum 35701 1498 3 family 0 21 16429 Oscillospiraceae 1 216572 459786 1 Oscillibacter 16408 28 0 genus 2 Oscillibacter valericigenes 351091 16380 0 1 species 3 family 0 10 Symbiobacteriaceae 1 543349 1327 1317 Symbiobacterium 1 2733 2 genus 0 8 species 1 0 2734 Symbiobacterium thermophilum 1309 9372 Christensenellaceae 990719 1 3 family 0 35 990721 1 Christensenella 9337 240 0 genus 2 0 1 species 9097 Christensenella massiliensis 1805714 871 1 68298 Syntrophomonadaceae family 3 1 0 1 genus 0 129001 309 0 1 species Syntrophothermus lipocalidus 86170 309 1 genus 0 561 862 0 1 species 561 Syntrophomonas wolfei 863 2304686 25160 family 12 0 0 155 2 genus Ruminiclostridium 1 1508657 3578 0 species 1 3423 1521 [Clostridium] cellulolyticum 2 genus 0 1 Fastidiosipila 236752 1 1458 1457 236753 Fastidiosipila sanguinis species 1 0 1637257 1 Mageeibacillus 1397 1 0 genus 2 1 species 0 Mageeibacillus indolicus 884684 1396 0 1 genus 1277 2304691 1277 [Clostridium] stercorarium 1510 1 species 0 0 1 no rank 2305130 9963 species 1 0 1834198 Ruminiclostridium sp. KB18 9963 2304692 5645 genus 3 0 288965 [Clostridium] clariflavum 2088 0 species 1 0 species 1 2028 1515 Ruminiclostridium thermocellum Herbivorax saccincola 1677857 1529 0 1 species 0 genus 1 2304693 1842 0 species 1 84032 [Clostridium] thermosuccinogenes 1842 1 186807 Peptococcaceae 22501 family 28 76 0 51196 1000 0 1 genus 1000 51197 Syntrophobotulus glycolicus 0 species 1 0 101 4 genus Dehalobacter 1 56112 3666 1326 Dehalobacter restrictus 55583 0 1 species 0 no rank 2 2239 2635733 1147129 Dehalobacter sp. DCA 1114 0 species 1 0 1 species 1125 Dehalobacter sp. CF 1131462 1 51514 Dehalobacterium 1896 1 0 genus 2 1 species 0 Dehalobacterium formicoaceticum 51515 1895 1562 1 Desulfotomaculum 3907 genus 5 19 0 1027 Desulfotomaculum ferrireducens 1833852 0 1 species Desulfotomaculum nigrificans 1565 774 1 species 0 species 1 0 1564 Desulfotomaculum ruminis 1058 1029 59610 Desulfotomaculum reducens 0 species 1 5315 36853 1 Desulfitobacterium 41 0 genus 5 Desulfitobacterium metallireducens 142877 717 1 species 0 0 species 1 1052 233055 Desulfitobacterium dichloroeliminans 1122 36854 Desulfitobacterium dehalogenans species 1 0 0 species 1 49338 Desulfitobacterium hafniense 2383 0 1 2 genus 466 Candidatus Desulforudis 1 471826 465 471827 Candidatus Desulforudis audaxviator 0 species 1 Desulfosporosinus 79206 1 3201 0 63 4 genus 1563 Desulfosporosinus orientis 1067 species 1 0 0 1 species Desulfosporosinus meridiei 79209 1154 0 1 species Desulfosporosinus acidiphilus 885581 917 706 1 278993 Thermincola genus 2 5 0 863643 Thermincola potens 701 species 1 0 0 genus 1 2282742 1059 0 species 1 58138 Desulfotomaculum acetoxidans 1059 genus 1 0 2282740 1209 species 1 0 102134 Desulfotomaculum gibsoniae 1209 0 11 5 family 8071 Eubacteriaceae 1 186806 6765 Eubacterium 1 1730 0 170 2 genus Eubacterium limosum 1736 6595 0 1 species 1295 1 33951 Acetobacterium genus 2 2 0 species 1 0 1293 33952 Acetobacterium woodii 137933 Clostridiaceae 31979 1 41 family 0 328 1 genus 0 63 Mordavella 1981033 20 0 genus 4 3297 1 49082 Candidatus Arthromitus 2638829 3277 3 no rank 0 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 1072 species 1 0 1096 Candidatus Arthromitus sp. SFB-mouse 49118 1 species 0 0 1 species 1109 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 129368 1 1485 Clostridium genus 30 510 0 1497 Clostridium formicaceticum 1412 0 species 1 0 1 species Clostridium aceticum 84022 1837 species 1 0 1960 1538 Clostridium ljungdahlii 1 species 0 3433 Clostridium carboxidivorans 217159 0 1 species Clostridium saccharoperbutylacetonicum 36745 5181 1542 Clostridium novyi 2554 species 1 0 1 species 0 Clostridium tetani 1513 3258 species 1 0 2968 29341 Clostridium argentinense 0 species 1 4145 1534 Clostridium kluyveri 1501 Clostridium pasteurianum 5363 species 1 0 1216932 Clostridium bornimense 3166 0 species 1 0 species 1 169679 Clostridium saccharobutylicum 4143 5518 Clostridium butyricum 1492 0 1 species 0 species 1 3319 1493 Clostridium cellulovorans 3146 Clostridium chauvoei 46867 0 1 species Clostridium acetobutylicum 1488 2155 0 1 species 1520 Clostridium beijerinckii 6099 0 species 1 species 1 0 1502 Clostridium perfringens 7508 2614128 16053 0 2 no rank 0 1 species 2189 Clostridium sp. BNL1100 755731 species 1 0 1042156 Clostridium sp. SY8519 13864 species 1 0 2636 1509 Clostridium sporogenes 5754 Clostridium baratii 1561 0 1 species 0 1 species 1931 Clostridium autoethanogenum 84023 20343 1491 Clostridium botulinum 0 species 1 0 1 species 2150 Clostridium tyrobutyricum 1519 species 1 0 394958 Clostridium taeniosporum 3127 Clostridium scatologenes 1548 3272 1 species 0 0 1 species Clostridium cochlearium 1494 4067 Clostridium estertheticum 238834 2360 1 species 0 1970 1 390805 Geosporobacter 4 0 genus 2 1966 1424294 Geosporobacter ferrireducens 0 species 1 Alkaliphilus 114627 1 2907 3 genus 0 8 species 1 0 461876 Alkaliphilus oremlandii 1199 1 species 0 Alkaliphilus metalliredigens 208226 1700 33 0 order 36 1 68295 Thermoanaerobacterales 24885 1 227387 Thermodesulfobiaceae 357 1 0 family 2 227388 356 1 genus 0 0 1 species Thermodesulfobium narugense 184064 356 13263 Thermoanaerobacteraceae 186814 1 18 family 0 9 9781 1 1754 Thermoanaerobacter 302 0 genus 9 849 Thermoanaerobacter mathranii 583357 1 species 0 2838 2636821 0 2 no rank Thermoanaerobacter sp. X514 399726 1425 1 species 0 Thermoanaerobacter sp. X513 573062 1413 0 1 species 1 species 0 1068 Thermoanaerobacter italicus 108150 29323 Thermoanaerobacter brockii 1092 species 1 0 1412 Thermoanaerobacter wiegelii 46354 1 species 0 1127 Thermoanaerobacter kivui 2325 0 1 species species 1 0 496866 Thermoanaerobacter pseudethanolicus 1093 0 no rank 4 1334 42857 genus 2 3 0 868 1 44260 Moorella 865 1525 Moorella thermoacetica 0 species 1 466 Ammonifex 42837 1 2 genus 0 9 42838 Ammonifex degensii 457 0 species 1 0 1 genus 648 249529 911092 Caldanaerobacter subterraneus 648 species 1 0 0 1 2 genus 656 Thermacetogenium 140458 1 Thermacetogenium phaeum 85874 655 1 species 0 1 genus 0 835 129957 species 1 0 835 129958 Carboxydothermus hydrogenoformans 834 Thermoanaerobacterales Family IV. Incertae Sedis 543372 1 0 4 2 family 0 genus 1 830 252965 Mahella australiensis 252966 830 1 species 0 10398 Thermoanaerobacterales Family III. Incertae Sedis 543371 1 13 family 0 18 genus 3 7 0 28895 1 Thermoanaerobacterium 2939 29329 Thermoanaerobacterium xylanolyticum 1114 0 species 1 1 species 0 1818 Thermoanaerobacterium thermosaccharolyticum 1517 0 147 9 genus 7441 Caldicellulosiruptor 1 44000 784 Caldicellulosiruptor obsidiansis 717609 1 species 0 1 species 0 Caldicellulosiruptor saccharolyticus 44001 1028 31899 Caldicellulosiruptor bescii 1173 0 species 1 0 1 species 906 Caldicellulosiruptor kristjanssonii 52765 1 species 0 962 Caldicellulosiruptor hydrothermalis 413888 844 55205 Caldicellulosiruptor owensensis 0 species 1 1 species 0 Caldicellulosiruptor kronotskyensis 413889 796 0 species 1 52766 Caldicellulosiruptor lactoaceticus 801 11 order 0 2 Halanaerobiales 1 53433 5359 3475 972 1 Halanaerobiaceae family 6 5 0 2 genus 0 7 761 Halothermothrix 32636 1 0 species 1 31909 Halothermothrix orenii 754 2709 1 2330 Halanaerobium 16 0 genus 3 0 species 1 1468 2331 Halanaerobium praevalens 1225 656519 Halanaerobium hydrogeniformans 0 species 1 53434 1 Halobacteroidaceae 1882 2 0 family 4 28186 664 0 genus 1 Acetohalobium arabaticum 28187 664 1 species 0 2 genus 0 2 Halobacteroides 1 42417 1216 0 species 1 42422 Halobacteroides halobius 1214 84086 1198 0 1 no rank 1 species 0 endosymbiont 'TC1' of Trimyema compressum 243899 1198 5 class 0 4 841 Limnochordia 1 1676648 837 Limnochordales 1 1676649 0 7 4 order Limnochordaceae 1676650 1 830 3 family 0 4 Limnochorda 1 1676651 826 0 2 2 genus Limnochorda pilosa 1555112 824 1 species 0 0 4 11 class Erysipelotrichia 1 526524 13433 13429 Erysipelotrichales 526525 1 10 order 0 12 13417 Erysipelotrichaceae 128827 1 0 191 9 family 2778 Faecalibaculum 1729679 1 0 18 2 genus 1702221 Faecalibaculum rodentium 2760 species 1 0 2743 Turicibacter 1 191303 0 18 2 genus 2638206 2725 1 no rank 0 2725 1712675 Turicibacter sp. H121 species 1 0 no rank 1 0 5920 544447 species 1 0 1834207 Erysipelotrichaceae bacterium I46 5920 genus 3 3 0 1647 1 Erysipelothrix 1785 854 Erysipelothrix larvae 1514105 0 1 species 1 species 0 Erysipelothrix rhusiopathiae 1648 928 class 31 35 0 168199 1 909932 Negativicutes order 14 50 0 909929 1 Selenomonadales 132854 0 8 4 family 4655 Sporomusaceae 1843490 1 0 21 3 genus Pelosinus 1 365348 4647 1 no rank 0 2629460 2016 2016 Pelosinus sp. UFO1 484770 0 1 species Pelosinus fermentans 365349 2610 0 1 species 52 0 family 9 1 1843491 Selenomonadaceae 128149 2 genus 0 4 Megamonas 1 158846 116453 116449 Megamonas hypermegale 158847 1 species 0 genus 6 59 0 970 1 Selenomonas 11644 2637378 5992 no rank 3 0 712538 Selenomonas sp. oral taxon 478 2181 0 species 1 species 1 0 713030 Selenomonas sp. oral taxon 136 1933 1878 1884263 Selenomonas sp. oral taxon 920 0 species 1 3545 Selenomonas ruminantium 971 1 species 0 2048 Selenomonas sputigena 69823 0 1 species 11 order 0 312 25150 Veillonellales 1843489 1 24838 Veillonellaceae 1 31977 0 1382 10 family 7485 Megasphaera 1 906 2 genus 0 48 species 1 0 907 Megasphaera elsdenii 7437 1 39948 Dialister 7140 genus 2 8 0 0 1 species 7132 Dialister pneumosintes 39950 7002 Veillonella 1 29465 0 12 3 genus 29466 Veillonella parvula 5103 species 1 0 1887 248315 Veillonella rodentium species 1 0 1 909928 Negativicoccus 1829 2 0 genus 2 0 1 species Negativicoccus massiliensis 1702287 1827 9 0 order 5 1 1843488 Acidaminococcales 10160 10151 909930 1 Acidaminococcaceae family 4 17 0 10134 Acidaminococcus 1 904 3 genus 0 17 4439 Acidaminococcus intestini 187327 1 species 0 905 Acidaminococcus fermentans 5678 0 species 1 0 3 19 class 11426 Tissierellia 1 1737404 Tissierellales 1 1737405 10701 0 47 16 order 1 2042895 Gottschalkiaceae 2219 family 3 2 0 2217 Gottschalkia 1 1505664 0 4 2 genus Gottschalkia acidurici 1556 2213 1 species 0 12 family 0 606 Peptoniphilaceae 1 1570339 8435 Murdochiella 1161127 1 2002 0 17 2 genus Murdochiella vaginalis 1852373 1985 0 1 species 543311 1 Parvimonas 1547 7 0 genus 2 1 species 0 Parvimonas micra 33033 1540 0 4 2 genus Finegoldia 150022 1 1278 Finegoldia magna 1260 1274 0 1 species 165779 1 Anaerococcus 2084 genus 3 1 0 1870984 Anaerococcus mediterraneensis 1046 species 1 0 Anaerococcus prevotii 33034 1037 0 1 species 162289 1 Peptoniphilus 918 3 0 genus 2 no rank 1 0 915 2637196 915 1912856 Peptoniphilus sp. ING2-D1G species 1 0 2 no rank 0 722 1737407 Ezakiella 1582879 1 722 2 genus 0 6 species 1 0 1852374 Ezakiella massiliensis 716 0 2 no rank 869 33974 1930845 1 Ndongobacter 869 genus 2 9 0 1 species 0 Ndongobacter massiliensis 1871025 860 0 5 phylum 1020 200938 27 0 class 5 118001 1 Chrysiogenetes 1020 Chrysiogenales 189769 1 993 4 order 0 9 189770 1 Chrysiogenaceae 984 family 3 6 0 978 1 393029 Desulfurispirillum 9 0 genus 2 0 species 1 936456 Desulfurispirillum indicum 969