members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 15531 4824 12267048 name 0 0 1 Archaea superkingdom 304 72549 4 0 1 2157 1 clade 83 1783276 0 83 phylum 1 0 1801631 83 1 genus 2490204 0 0 1920749 83 1 species Candidatus Micrarchaeota archaeon Mia14 59 clade 11502 1783275 0 5757 phylum 44 0 28889 Thermoprotei 0 183924 1 2 5757 44 class 3 order 562 871006 0 family 1 521 0 255472 521 1 genus 200414 0 Caldisphaera lagunensis 521 species 1 0 200415 0 1 871007 1 2 family 41 Acidilobaceae 40 1 genus 105850 0 Acidilobus saccharovorans 40 species 1 242703 0 0 2281 3208 order 11 16 3208 11 family 118883 0 1 Sulfolobaceae 12 genus 4 1461 2284 0 1 Sulfolobus 267 1 species 0 2285 Sulfolobus acidocaldarius 1 no rank 475 2641160 0 Sulfolobus sp. A20 0 1891280 species 1 475 0 43080 707 1 species Sulfolobus islandicus 424 1 genus 0 2100760 Sulfolobus solfataricus 424 1 species 0 2287 genus 1 609 69655 0 Sulfolobus tokodaii 0 111955 609 1 species Metallosphaera 315 3 genus 5 41980 0 1 Metallosphaera cuprina 1006005 0 201 species 1 109 species 1 0 43687 Metallosphaera sedula 1 genus 383 12914 0 Acidianus hospitalis 383 species 1 0 563177 order 13 872 2 2266 0 1 Thermoproteales 114378 0 269 family 5 Thermofilum genus 5 269 13 0 1 2268 73 species 1 0 1550241 Thermofilum uzonense Thermofilum pendens 0 2269 70 species 1 0 1483572 58 species 1 Thermofilum carboxyditrophus 0 1365176 species 1 55 Thermofilum adornatus Thermoproteaceae 7 family 601 5 0 1 2267 164450 0 genus 2 276 Vulcanisaeta distributa 129 1 species 0 164451 0 985052 147 species 1 Vulcanisaeta moutnovskia 2 genus 117 2270 0 1 species 69 2271 0 Thermoproteus tenax Thermoproteus uzoniensis species 1 48 184117 0 1 genus 112 0 76886 Caldivirga maquilingensis 76887 0 112 species 1 1 genus 91 0 2276 Pyrobaculum islandicum 0 2277 91 1 species 114380 0 order 16 1113 Pyrodictiaceae family 5 279 12 2307 0 1 0 54251 83 genus 1 Pyrolobus fumarii 0 54252 83 1 species Pyrodictium 0 1 2308 4 genus 2 78 Pyrodictium delaneyi 1 species 74 0 1273541 genus 1 106 0 54247 Hyperthermus butylicus 54248 0 106 1 species Desulfurococcaceae 11 family 834 12 1 0 2272 0 54253 49 1 genus 49 species 1 0 54254 Thermosphaera aggregans Thermogladius 0 1 477695 11 2 genus 58 Thermogladius calderae species 1 47 1200300 0 148 2 genus 54258 0 Ignicoccus islandicus 70 species 1 0 54259 78 1 species 0 160233 Ignicoccus hospitalis Staphylothermus 11 452 genus 3 2279 0 1 Staphylothermus marinus 0 2280 271 1 species 0 84599 170 species 1 Staphylothermus hellenicus 0 2273 115 genus 2 Desulfurococcus mucosus 0 2275 1 species 23 1 species 92 94694 0 Desulfurococcus amylolyticus Thaumarchaeota 2 5683 14 phylum 1 0 651137 3 7 order 2745 31932 0 1 Nitrosopumilales Nitrosopumilaceae 1 6 family 2742 0 338190 1 1 0 338191 5 1575 genus 3 Nitrosopumilus Candidatus Nitrosopumilus sediminis 0 1229909 743 1 species Candidatus Nitrosopumilus adriaticus 0 1580092 827 species 1 Candidatus Nitrosomarinus 0 1 1993653 2 genus 1166 4 Candidatus Nitrosomarinus catalina 1 species 1162 0 1898749 1643678 0 1752 class 2 0 1968909 998 1 order family 1 998 1968910 0 998 genus 1 498374 0 Candidatus Nitrosocaldus islandicus 1 species 998 0 2045011 0 1033996 order 1 754 1033997 0 1 family 754 754 genus 1 497726 0 Nitrososphaera viennensis 0 1034015 1 species 754 0 651142 1184 4 no rank Candidatus Nitrosopelagicus 0 1593364 1 genus 2 782 4 species 1 778 1410606 0 Candidatus Nitrosopelagicus brevis genus 2 402 1825023 0 207 1 species 0 1846278 Candidatus Nitrosotenuis sp. AQ6f Candidatus Nitrosotenuis cloacae 1 species 195 0 1603555 62 1 phylum 0 51967 62 genus 1 0 498845 0 498846 species 1 62 Candidatus Korarchaeum cryptofilum 0 1 28890 2 60960 phylum 243 Euryarchaeota 2283796 0 5513 clade 24 699 clade 3 1803510 0 Aciduliprofundum 0 1 379546 genus 3 699 15 1 species 394 0 379547 Aciduliprofundum boonei 1 no rank 290 2633939 0 Aciduliprofundum sp. MAR08-339 290 species 1 673860 0 0 183967 4814 21 class 1234666 0 no rank 1 423 0 1495144 1 species 423 methanogenic archaeon ISO4-H5 Thermoplasmatales 2704 13 order 16 0 1 2301 1 0 1747776 family 3 492 8 Cuniculiplasmataceae 484 2 genus 7 0 1747777 1 Cuniculiplasma Cuniculiplasma divulgatum 1673428 0 1 species 477 46630 0 427 2 family Picrophilus 1 0 46631 2 genus 427 14 1 species 413 0 82076 Picrophilus torridus no rank 1 427 0 1919231 Thermoplasmatales archaeon BRNA1 0 1054217 427 1 species 0 90142 3 family 783 Ferroplasma 3 genus 783 21 0 74968 1 Ferroplasma acidarmanus 376 species 1 0 97393 Ferroplasma acidiphilum 0 74969 species 1 386 559 family 3 0 46659 Thermoplasma 0 2302 1 3 genus 559 9 Thermoplasma volcanium species 1 295 50339 0 Thermoplasma acidophilum 1 species 255 0 2303 Methanomassiliicoccales 1 0 1235850 1687 order 7 1 Methanomassiliicoccaceae 1343 4 family 31 0 1 1577788 478 genus 1 0 1607807 Candidatus Methanoplasma termitum 0 1577791 species 1 478 834 2 genus 1 0 1 1080709 Methanomassiliicoccus Candidatus Methanomassiliicoccus intestinalis 0 1406512 833 species 1 0 2517203 343 family 2 Candidatus Methanomethylophilus 1291539 0 1 genus 2 343 2 341 1 species 0 1291540 Candidatus Methanomethylophilus alvus Thermococci 4871 class 41 3 0 1 183968 Thermococcales 1 0 2258 7 order 40 4868 Thermococcaceae 0 1 2259 12 4861 39 family 211 genus 1 0 83867 Palaeococcus pacificus 0 971279 1 species 211 Thermococcus 0 1 2263 genus 29 3601 39 56 1 species 0 53952 Thermococcus peptonophilus Thermococcus gorgonarius 0 71997 1 species 66 0 2627626 no rank 6 504 Thermococcus sp. AM4 86 1 species 0 246969 73 species 1 0 2016361 Thermococcus sp. EXT12c Thermococcus sp. 5-4 0 2008440 54 1 species Thermococcus sp. 2319x1 0 1674923 166 1 species Thermococcus sp. P6 0 122420 1 species 41 Thermococcus sp. 4557 1 species 84 0 1042877 0 195522 species 1 59 Thermococcus nautili 556 species 1 0 72803 Thermococcus siculi 71 species 1 163003 0 Thermococcus cleftensis Thermococcus profundus species 1 61 0 49899 species 1 170 0 54262 Thermococcus chitonophagus 0 1505907 species 1 77 Thermococcus eurythermalis Thermococcus paralvinellae 319 species 1 0 582419 Thermococcus barossii 54 species 1 0 54077 0 71998 75 species 1 Thermococcus pacificus 187878 0 1 species 101 Thermococcus gammatolerans Thermococcus radiotolerans species 1 66 187880 0 1 species 273 0 2265 Thermococcus litoralis 1 species 345 0 55802 Thermococcus barophilus Thermococcus thioreducens species 1 72 0 277988 Thermococcus sibiricus 281 species 1 0 172049 0 2264 92 1 species Thermococcus celer 0 1712654 59 1 species Thermococcus piezophilus 110164 0 1 species 78 Thermococcus guaymasensis 0 342948 59 species 1 Thermococcus onnurineus Thermococcus kodakarensis 68 1 species 0 311400 1037 8 genus 12 0 1 2260 Pyrococcus Pyrococcus kukulkanii 103 species 1 0 1609559 no rank 2 382 2629106 0 Pyrococcus sp. NA2 0 342949 1 species 150 0 1183377 232 species 1 Pyrococcus sp. ST04 87 1 species 0 29292 Pyrococcus abyssi 2261 0 species 1 211 Pyrococcus furiosus Pyrococcus yayanosii 0 1008460 1 species 81 0 53953 161 species 1 Pyrococcus horikoshii class 11 1437 183980 0 Archaeoglobales 2 1437 order 11 0 2231 1 1 0 2232 1435 family 10 19 Archaeoglobaceae 20 895 5 genus 0 1 2233 Archaeoglobus 0 58290 1 species 212 Archaeoglobus veneficus species 1 177 0 2234 Archaeoglobus fulgidus Archaeoglobus sulfaticallidus 0 1316941 species 1 203 Archaeoglobus profundus 0 84156 283 1 species 1 genus 181 0 54260 Ferroglobus placidus 0 54261 species 1 181 190818 0 1 5 genus 3 340 Geoglobus Geoglobus acetivorans 0 565033 183 species 1 Geoglobus ahangari 0 113653 species 1 152 19807 43 clade 0 2283794 18 class 10189 7 0 1 183939 Methanococci Methanococcales 10182 17 order 9 0 1 2182 Methanococcaceae 0 1 2183 7 family 5553 6 1 genus 615 0 155862 1 species 615 0 155863 Methanothermococcus okinawensis Methanococcus 0 2184 1 4932 5 genus 19 0 42879 701 species 1 Methanococcus aeolicus species 1 640 0 2187 Methanococcus vannielii Methanococcus voltae 898 1 species 0 2188 Methanococcus maripaludis 0 39152 2674 1 species 5 family 9 4620 1 0 196117 Methanocaldococcaceae 58 3929 7 genus 196118 0 1 Methanocaldococcus Methanocaldococcus infernus 0 67760 1 species 455 618 1 species 73913 0 Methanocaldococcus vulcanius 736 species 1 0 1301915 Methanocaldococcus bathoardescens 0 2190 1 species 720 Methanocaldococcus jannaschii 608 1 no rank 2641196 0 1 species 608 0 644281 Methanocaldococcus sp. FS406-22 Methanocaldococcus fervens 734 1 species 83171 0 686 genus 1 196119 0 686 species 1 2189 0 Methanotorris igneus Methanobacteria 25 class 9618 3 0 1 183925 13 24 order 9615 1 0 2158 Methanobacteriales 0 1 2159 8911 22 family 5 Methanobacteriaceae 19 5 genus 578 0 1 145260 Methanothermobacter Methanothermobacter wolfeii 117 species 1 145261 0 0 145263 177 species 1 Methanothermobacter marburgensis 0 2631116 170 1 no rank Methanothermobacter sp. CaT2 1 species 170 866790 0 Methanothermobacter thermautotrophicus 0 145262 species 1 95 0 2316 1 genus 970 Methanosphaera stadtmanae 970 1 species 0 2317 0 2172 1 4746 7 genus 9 Methanobrevibacter 0 83816 1 species 501 Methanobrevibacter ruminantium 948 1 species 0 2173 Methanobrevibacter smithii 0 2638681 1241 2 no rank 0 224719 674 species 1 Methanobrevibacter sp. AbM4 1609968 0 567 species 1 Methanobrevibacter sp. YE315 1123 1 species 0 294671 Methanobrevibacter olleyae Methanobrevibacter millerae species 1 924 0 230361 Methanobacterium 8 genus 2612 39 1 0 2160 0 877455 species 1 518 Methanobacterium lacus Methanobacterium subterraneum 0 59277 243 species 1 Methanobacterium congolense 118062 0 species 1 419 2627676 0 no rank 2 525 Methanobacterium sp. MZ-A1 0 1911685 261 1 species Methanobacterium sp. MB1 0 1379702 264 1 species 0 868131 1 species 520 Methanobacterium paludis Methanobacterium formicicum 348 species 1 0 2162 2178 0 family 1 691 0 2179 691 genus 1 species 1 691 0 2180 Methanothermus fervidus 2290931 0 29330 123 clade 58 16580 68 class 1 0 183963 Halobacteria Natrialbales 1644060 0 1 65 order 21 6316 Natrialbaceae 20 family 6251 56 1 0 1644061 273 2 genus 4 0 1269201 1 Salinarchaeum 2621923 0 269 1 no rank 0 1333523 species 1 269 Salinarchaeum sp. Harcht-Bsk1 Natrialba 2404 genus 2 4 1 0 63742 0 13769 1 species 2400 Natrialba magadii 0 1 203193 638 genus 2 2 Halobiforma Halobiforma lacisalsi 229731 0 636 species 1 295 2 genus 2 2256 0 1 Natronobacterium Natronobacterium gregoryi 44930 0 293 1 species Haloterrigena 996 genus 3 6 0 1 121871 0 588898 542 species 1 Haloterrigena daqingensis Haloterrigena turkmenica 0 62320 species 1 448 Halopiger 0 387342 1 2 genus 2 443 0 387343 441 1 species Halopiger xanaduensis Halostagnicola 1 212 genus 2 0 1 353799 Halostagnicola larsenii 211 1 species 0 353800 Natrinema 88723 0 1 8 584 genus 3 no rank 1 272 2622230 0 Natrinema sp. J7-2 0 406552 species 1 272 304 1 species 0 69525 Natrinema pellirubrum 350 genus 1 29287 0 Natronococcus occultus 0 29288 350 species 1 Halobacteriales 4038 order 27 38 1 0 2235 Halobacteriaceae 1636 11 family 5 1 0 2236 Halodesulfurarchaeum 0 1980514 1 142 2 genus 5 Halodesulfurarchaeum formicicum 137 1 species 0 1873524 Halanaeroarchaeum 1656823 0 1 118 2 genus 2 1 species 116 1604004 0 Halanaeroarchaeum sulfurireducens 24 1082 genus 4 2239 0 1 Halobacterium 0 2668073 367 no rank 1 species 1 367 0 751944 Halobacterium sp. DL1 0 1407499 439 1 species Halobacterium hubeiense 252 species 1 0 2242 Halobacterium salinarum Halalkalicoccus 0 332246 1 2 genus 289 3 Halalkalicoccus jeotgali 413810 0 286 1 species Haloarculaceae 0 1 1963268 23 2364 family 15 15 834 genus 5 1 0 2237 Haloarcula 1932004 0 1 species 209 Haloarcula taiwanensis no rank 1 225 2624677 0 1592728 0 species 1 225 Haloarcula sp. CBA1115 Haloarcula marismortui 190 1 species 0 2238 195 species 1 51589 0 Haloarcula hispanica 0 1 203135 4 301 genus 2 Halomicrobium Halomicrobium mukohataei 0 57705 1 species 297 1073987 0 1 1 genus 2 318 Halorientalis 1 no rank 317 2648975 0 1932360 0 317 species 1 Halorientalis sp. IM1011 Natronomonas 63743 0 1 8 486 genus 3 Natronomonas pharaonis 0 2257 1 species 228 416273 0 250 species 1 Natronomonas moolapensis 402 genus 2 146825 0 0 146826 1 species 209 Halorhabdus utahensis 0 430914 193 1 species Halorhabdus tiamatea Haloferacales 0 1644055 1 6168 19 order 61 Haloferacaceae 0 1 1644056 9 family 4290 38 10 genus 2 2527 293431 0 1 Haloquadratum Haloquadratum walsbyi 1 species 2517 293091 0 2251 0 1 4 genus 1515 21 Haloferax 625 species 1 35746 0 Haloferax gibbonsii 2252 0 species 1 323 Haloferax mediterranei 0 2246 1 species 546 Haloferax volcanii Halogeometricum 6 2 genus 210 0 60846 1 60847 0 204 species 1 Halogeometricum borinquense 0 2678336 302 1 no rank halophilic archaeon DL31 756883 0 302 1 species 1963271 0 1 10 8 family 1515 Halorubraceae 1 0 1209988 genus 2 299 4 Halopenitus Halopenitus persicus 1 species 295 0 1048396 Halorubrum 56688 0 1 4 3 genus 752 Halorubrum lacusprofundi 0 2247 308 species 1 Halorubrum trapanicum 0 29284 440 1 species Salinigranum 2 454 2 genus 0 1644057 1 1 species 452 0 755307 Salinigranum rubrum 13 12750 55 class 224756 0 1 Methanomicrobia Methanosarcinales 31 order 10078 6 0 94695 1 Methanosarcinaceae 21 family 26 9400 2206 0 1 genus 1 426 196136 0 species 1 426 0 39669 Methanosalsum zhilinae Methanohalophilus 3 genus 3 599 2175 0 1 Methanohalophilus halophilus 288 species 1 0 2177 Methanohalophilus mahii 0 2176 1 species 308 2225 0 1 667 genus 3 2 Methanococcoides 1 species 322 0 29291 Methanococcoides burtonii Methanococcoides methylutens 0 2226 species 1 343 0 2321 1 genus 547 0 2322 species 1 547 Methanohalobium evestigatum 101191 0 1 7 338 genus 2 Methanomethylovorans Methanomethylovorans hollandica 101192 0 1 species 331 2 215 2 genus 0 1 2220 Methanolobus 1 species 213 0 420950 Methanolobus psychrophilus Methanosarcina 0 2207 1 15 6587 13 genus Methanosarcina siciliae 634 species 1 0 38027 0 418008 452 1 species Methanosarcina horonobensis 398 species 1 0 170861 Methanosarcina lacustris Methanosarcina barkeri species 1 1507 0 2208 0 2209 723 1 species Methanosarcina mazei 2210 0 species 1 322 Methanosarcina thermophila Methanosarcina vacuolata 0 2215 species 1 537 2214 0 species 1 382 Methanosarcina acetivorans 0 2644672 4 no rank 1617 0 1434100 428 1 species Methanosarcina sp. MTP4 species 1 479 1434099 0 Methanosarcina sp. Kolksee 338 1 species 1434102 0 Methanosarcina sp. WH1 0 1434103 species 1 372 Methanosarcina sp. WWM596 0 1 143067 3 672 family 4 Methanosaetaceae Methanothrix 1 0 2222 3 genus 669 30 Methanothrix soehngenii 329 species 1 0 2223 species 1 310 0 301375 Methanosaeta harundinacea 2191 0 1 24 2075 order 18 Methanomicrobiales 6 family 674 14 0 1198451 1 Methanoregulaceae Methanoregula 362 3 genus 21 0 1 395331 Methanoregula boonei 1 species 192 0 358766 Methanoregula formicica species 1 149 0 882104 Methanosphaerula 2 genus 2 298 1 0 475087 0 475088 296 species 1 Methanosphaerula palustris 196137 0 2 family 318 Methanospirillum 2 genus 318 15 1 0 2202 Methanospirillum hungatei 0 2203 303 1 species 0 88404 2 family 137 Methanocorpusculum 10 137 2 genus 2192 0 1 Methanocorpusculum labreanum 127 1 species 0 83984 Methanomicrobiaceae 9 922 7 family 0 1 2194 Methanolacinia 0 230355 1 5 236 genus 2 0 54120 species 1 231 Methanolacinia petrolearia 0 45989 1 13 4 genus 677 Methanoculleus Methanoculleus marisnigri 1 species 262 2198 0 0 83986 225 species 1 Methanoculleus bourgensis 177 no rank 1 2619537 0 Methanoculleus sp. MAB1 0 86622 species 1 177 584 order 5 4 0 570264 1 Methanocellales family 4 580 12 1 0 570265 Methanocellaceae Methanocella 1 0 570266 3 genus 568 35 0 1175444 178 species 1 Methanocella conradii 1175445 0 1 species 355 Methanocella arvoryzae Bacteria 57 4488 superkingdom 12178968 0 2 1 200930 0 phylum 11 6121 19 6121 11 class 68337 0 1 Deferribacteres 6102 order 10 16 191393 0 1 Deferribacterales 1 0 191394 41 9 family 6086 Deferribacteraceae 1 0 53572 3062 genus 2 3 Deferribacter Deferribacter desulfuricans 1 species 3059 0 197162 Denitrovibrio 17 2 genus 811 117999 0 1 Denitrovibrio acetiphilus 0 118000 794 1 species 0 2351 1 4 1052 2 genus Flexistipes Flexistipes sinusarabici 2352 0 1048 1 species 1 0 545865 3 1120 genus 2 Calditerrivibrio Calditerrivibrio nitroreducens 0 477976 1117 1 species Proteobacteria 0 1224 1 phylum 2059 1980422 422 Zetaproteobacteria 0 580370 1 1 904 6 class 23 903 5 order 0 580371 1 Mariprofundales 7 880 family 4 580372 0 1 Mariprofundaceae Mariprofundus 377315 0 1 genus 3 873 23 Mariprofundus ferrinatatus 1921087 0 387 1 species Mariprofundus aestuarium 463 1 species 0 1921086 0 1 28216 260 354 class 206663 Betaproteobacteria no rank 12 11381 0 119066 Candidatus Profftella 1381133 0 1 1592 genus 2 13 Candidatus Profftella armatura 0 669502 1 species 1579 Candidatus Accumulibacter 327159 0 1 2 genus 625 10 0 327160 615 1 species Candidatus Accumulibacter phosphatis genus 1 414 1301080 0 species 1 414 1160784 0 Candidatus Nasuia deltocephalinicola 1 0 33055 8553 genus 6 34 Kinetoplastibacterium species 1 1335 0 994695 Candidatus Kinetoplastibacterium galatii 233181 0 1 species 1476 Kinetoplastibacterium blastocrithidii 1 species 1938 33056 0 Candidatus Kinetoplastibacterium crithidii Candidatus Kinetoplastibacterium oncopeltii 994696 0 1609 1 species 0 994692 1 species 2161 Candidatus Kinetoplastibacterium desouzaii 0 189384 genus 1 197 Candidatus Tremblaya princeps 0 189385 197 1 species Neisseriales 122 37 order 13147 206351 0 1 Neisseriaceae 23 family 8423 66 0 1 481 1077 3 genus 23 0 1 59 Vitreoscilla 1 no rank 651 2627922 0 Vitreoscilla sp. C1 1 species 651 0 96942 Vitreoscilla filiformis 403 species 1 0 63 0 421605 no rank 1 1377 Neisseriaceae bacterium DSM 100970 0 2052837 1377 species 1 77 12 genus 4096 482 0 1 Neisseria Neisseria lactamica 0 486 337 1 species 490 0 241 1 species Neisseria sicca 2 no rank 566 0 2623750 279 1 species 0 655307 Neisseria sp. KEM232 0 1853276 1 species 287 Neisseria sp. 10022 0 488 1 species 252 Neisseria mucosa 1 species 342 0 485 Neisseria gonorrhoeae 0 487 1067 1 species Neisseria meningitidis Neisseria elongata species 1 258 0 495 Neisseria weaveri 0 28091 species 1 389 Neisseria zoodegmatis 0 326523 species 1 331 Neisseria sp. 10023 0 1853278 236 1 species Eikenella 0 1 538 2 334 2 genus 0 539 species 1 332 Eikenella corrodens 644 2 genus 1 0 71 1 Simonsiella 1 species 643 0 72 Simonsiella muelleri Snodgrassella 2 2 genus 829 1193515 0 1 0 1196083 1 species 827 Snodgrassella alvi Chromobacteriaceae 0 1499392 1 13 family 4602 106 2 genus 613 14 1 0 568394 Pseudogulbenkiania 1 no rank 599 0 2642558 Pseudogulbenkiania sp. NH8B 1 species 599 748280 0 no rank 4 2357 90153 0 76 4 genus 2357 1 0 535 Chromobacterium 656 no rank 1 2641838 0 Chromobacterium sp. ATCC 53434 2059672 0 1 species 656 Chromobacterium vaccinii 908 1 species 1108595 0 Chromobacterium violaceum 536 0 species 1 717 12 genus 2 455 168470 0 1 Laribacter species 1 443 0 168471 Laribacter hongkongensis 1 0 187 2 genus 436 17 Aquaspirillum 0 2620219 419 no rank 1 species 1 419 0 1938604 Aquaspirillum sp. LM1 635 2 genus 11 1 0 885864 Jeongeupia 0 2619593 624 no rank 1 1906741 0 species 1 624 Jeongeupia sp. USM3 no rank 2 1448 0 33809 1 species 809 0 543913 beta proteobacterium CB Betaproteobacteria bacterium GR16-43 639 1 species 0 1904640 Burkholderiales 1 0 80840 order 236 158102 1351 7506 17 no rank 224471 0 2 genus 895 21 0 1 28067 Rubrivivax Rubrivivax gelatinosus 874 1 species 0 28068 Methylibium 652 genus 2 18 0 316612 1 Methylibium petroleiphilum 1 species 634 105560 0 Paucibacter 318147 0 1 15 2 genus 752 1 no rank 737 2642959 0 Paucibacter sp. KCTC 42545 737 1 species 0 1768242 0 88 1 32 genus 2 787 Leptothrix Leptothrix cholodnii 755 species 1 0 34029 Mitsuaria 2 genus 945 20 65047 0 1 0 2648776 no rank 1 925 Mitsuaria sp. 7 925 species 1 1658665 0 Roseateles genus 2 827 6 0 1 93681 0 76731 1 species 821 Roseateles depolymerans 0 212743 1 801 genus 2 18 Rhizobacter Rhizobacter gummiphilus 946333 0 1 species 783 413882 0 1 species 1121 [Polyangium] brachysporum 18 726 2 genus 1 0 32012 Thiomonas 0 926 708 species 1 Thiomonas intermedia 79960 84 family 366 0 119060 1 Burkholderiaceae 1 0 44013 2382 4 genus 32 Polynucleobacter Polynucleobacter asymbioticus species 1 1080 0 576611 749 species 1 0 1835254 Polynucleobacter duraquae Polynucleobacter necessarius 0 576610 1 species 521 0 106589 1 9 genus 9088 208 Cupriavidus Cupriavidus gilardii 1 species 768 0 82541 1101 species 1 0 367825 Cupriavidus sp. USMAA1020 species 1 1254 0 68895 Cupriavidus basilensis Cupriavidus metallidurans 1 species 1499 0 119219 248026 0 637 species 1 Cupriavidus pinatubonensis 1132 1 species 0 106590 Cupriavidus necator 2 no rank 2489 0 2640874 Cupriavidus sp. USMAHM13 0 1389192 1 species 1118 0 876364 species 1 1371 Cupriavidus sp. USMAA2-4 0 1822464 1 157 9322 genus 12 Paraburkholderia 992 species 1 0 261302 Paraburkholderia phytofirmans 781 1 species 0 169430 Paraburkholderia hospita 805 1 species 0 36873 Paraburkholderia xenovorans Paraburkholderia caribensis 0 75105 species 1 1430 2026199 0 733 species 1 Paraburkholderia aromaticivorans Paraburkholderia terrae 0 311230 species 1 714 Paraburkholderia fungorum 0 134537 707 species 1 Paraburkholderia phymatum 721 species 1 0 148447 1 species 685 0 252970 Paraburkholderia phenoliruptrix 0 2615204 904 no rank 1 Paraburkholderia sp. SOS3 1 species 904 0 1926494 Paraburkholderia sprentiae 0 948107 1 species 693 Pandoraea 118 6429 genus 10 93217 0 1 species 1 431 0 445709 Pandoraea thiooxydans 0 93221 1762 1 species Pandoraea pulmonicola 0 656179 1 species 432 Pandoraea faecigallinarum Pandoraea oxalativorans 1 species 666 0 573737 0 93222 424 species 1 Pandoraea sputorum 93220 0 741 1 species Pandoraea pnomenusa 543 species 1 0 656178 Pandoraea vervacti Pandoraea apista 1 species 541 93218 0 0 93219 1 species 771 Pandoraea norimbergensis 1 genus 762 0 1827195 Burkholderia sp. RPE64 762 species 1 758793 0 2571159 0 1 genus 362 Paraburkholderia rhizoxinica 0 412963 1 species 362 0 1 48736 genus 5 5357 72 Ralstonia 0 305 1 species 2684 Ralstonia solanacearum 0 105219 840 species 1 Ralstonia mannitolilytica Ralstonia pickettii 1099 1 species 0 329 0 190721 1 species 662 Ralstonia insidiosa Burkholderia 1562 45892 genus 41 0 32008 1 1413 1 species 0 28095 Burkholderia gladioli 0 111527 species group 7 12622 Burkholderia sp. MSMB617WGS 839 species 1 0 1637831 Burkholderia oklahomensis 978 species 1 0 342113 Burkholderia sp. MSMB0266 species 1 772 0 1637837 Burkholderia thailandensis 0 57975 1748 1 species Burkholderia sp. MSMB0852 species 1 1015 0 1637841 0 13373 1 species 1149 Burkholderia mallei 0 28450 species 1 6121 Burkholderia pseudomallei no rank 11 6625 0 2613784 1 species 526 0 1740163 Burkholderia sp. Bp7605 species 1 441 0 1795043 Burkholderia sp. PAMC 26561 0 640510 species 1 656 Burkholderia sp. CCGE1001 Burkholderia sp. RPE67 0 758796 1 species 892 640512 0 species 1 594 Burkholderia sp. CCGE1003 Burkholderia sp. HB1 643 species 1 1678678 0 520 1 species 1468409 0 Burkholderia sp. 2002721687 Burkholderia sp. KJ006 416344 0 1 species 501 Burkholderia sp. YI23 species 1 874 0 1097668 423 species 1 0 1795874 Burkholderia sp. PAMC 28687 Burkholderia sp. Bp5365 555 1 species 0 1740162 0 337 1578 species 1 Burkholderia glumae 87882 0 21236 species group 19 Burkholderia pyrrocinia 0 60550 475 1 species [Pseudomonas] mesoacidophila 0 265293 species 1 648 Burkholderia territorii 505 species 1 0 1503055 Burkholderia cepacia 3470 1 species 292 0 Burkholderia ambifaria 152480 0 species 1 1022 0 482957 1 species 1702 Burkholderia lata 0 488447 1 species 684 Burkholderia contaminans Burkholderia latens 0 488446 792 1 species 0 95485 1 species 1058 Burkholderia stabilis Burkholderia cenocepacia 0 95486 2902 1 species Burkholderia ubonensis species 1 2015 0 101571 Burkholderia seminalis species 1 571 0 488731 1 species 1409 0 87883 Burkholderia multivorans Burkholderia vietnamiensis 0 60552 1166 1 species 0 1207504 species 1 520 Burkholderia pseudomultivorans Burkholderia diffusa 563 species 1 0 488732 1 species 672 0 1503054 Burkholderia stagnalis 0 152500 546 1 species Burkholderia dolosa Burkholderia metallica species 1 516 0 488729 856 1 species 0 41899 Burkholderia plantarii 0 75682 1 14960 29 family 109 Oxalobacteraceae Massilia 92 genus 6 3735 0 1 149698 1395 no rank 2 0 2609279 species 1 753 0 1707785 Massilia sp. WG5 0 1678028 642 species 1 Massilia sp. NR 4-1 0 2045208 722 species 1 Massilia sp. B2 Massilia sp. ZMN-3 0 2072590 species 1 796 1141883 0 730 1 species Massilia putida genus 3 776 12 303379 0 1 Herminiimonas 0 1809410 392 species 1 Herminiimonas arsenitoxidans 1 species 372 0 204773 Herminiimonas arsenicoxydans Janthinobacterium 0 29580 1 7 genus 3649 74 667 species 1 0 368607 Janthinobacterium svalbardensis species 1 586 0 55508 Janthinobacterium agaricidamnosum 2610881 0 4 no rank 2322 718 species 1 0 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv Janthinobacterium sp. LM6 604 species 1 0 1938606 Janthinobacterium sp. B9-8 1 species 626 0 1236179 374 species 1 0 375286 Janthinobacterium sp. Marseille 78 4 genus 2450 0 202907 1 Collimonas Collimonas pratensis 660 1 species 0 279113 Collimonas arenae 989 1 species 0 279058 Collimonas fungivorans species 1 723 0 158899 963 0 1 genus 6 3937 68 Herbaspirillum 1 species 516 0 80842 Herbaspirillum rubrisubalbicans 0 2624150 571 no rank 1 Herbaspirillum sp. meg3 0 2025949 1 species 571 Herbaspirillum seropedicae 968 1 species 0 964 Herbaspirillum hiltneri 1 species 1115 0 341045 Herbaspirillum frisingense 0 92645 1 species 699 846 0 1 2 genus 304 4 Oxalobacter 300 1 species 847 0 Oxalobacter formigenes 80841 0 no rank 2 910 0 1834205 508 species 1 Burkholderiales bacterium YL45 Burkholderiales bacterium GJ-E10 402 1 species 0 1469502 Comamonadaceae 374 family 59 28709 0 80864 1 1 0 80865 74 3073 genus 5 Delftia 2613839 0 1552 2 no rank species 1 894 0 742013 Delftia sp. Cs1-4 658 1 species 1920191 0 Delftia sp. HK171 Delftia tsuruhatensis 0 180282 species 1 763 0 80866 684 species 1 Delftia acidovorans genus 2 627 8 0 201096 1 Alicycliphilus Alicycliphilus denitrificans 0 179636 619 species 1 Acidovorax 0 1 12916 124 3779 genus 9 Acidovorax ebreus 362 1 species 0 721785 Acidovorax avenae 0 80867 600 species 1 Acidovorax sp. NA3 1 species 303 0 553814 Acidovorax citrulli 523 1 species 0 80869 1867 no rank 4 2684926 0 418 1 species 0 1842533 Acidovorax sp. RAC01 Acidovorax sp. KKS102 445 1 species 358220 0 Acidovorax sp. T1 species 1 633 0 1858609 Acidovorax sp. JS42 371 1 species 0 232721 Rhodoferax 15 2028 5 genus 28065 0 1 1 species 411 0 1484693 Rhodoferax saidenbachensis Rhodoferax antarcticus species 1 437 0 81479 1 species 481 192843 0 Rhodoferax ferrireducens Rhodoferax koreense 0 1842727 species 1 684 219181 0 1 801 genus 3 19 Ottowia Ottowia sp. KADR8-3 445 species 1 2109914 0 337 1 no rank 2645081 0 Ottowia sp. oral taxon 894 1 species 337 0 1658672 862 2 genus 0 2490452 Comamonadaceae bacterium A1 0 1458425 species 1 423 species 1 439 0 1458426 Comamonadaceae bacterium B1 Simplicispira 2 genus 2 399 0 1 352450 Simplicispira sp. SC1-8 2109915 0 1 species 397 genus 1 416 2678886 0 Melaminivora sp. SC2-7 2116657 0 416 species 1 0 1 665874 genus 3 693 3 Limnohabitans no rank 2 690 2626134 0 Limnohabitans sp. 63ED37-2 0 1678128 334 1 species 1 species 356 0 1678129 Limnohabitans sp. 103DPR2 Ramlibacter genus 2 1150 6 0 174951 1 species 1 1144 0 94132 Ramlibacter tataouinensis Polaromonas genus 3 2416 15 0 1 52972 216465 0 725 1 species Polaromonas naphthalenivorans 1676 1 no rank 2638319 0 Polaromonas sp. JS666 1676 1 species 0 296591 Comamonas 0 283 1 18 2506 4 genus Comamonas kerstersii 521 species 1 0 225992 0 1082851 1 species 944 Comamonas serinivorans Comamonas testosteroni 285 0 1 species 1023 Melaminivora 13 2 genus 478 0 1649468 1 2641902 0 no rank 1 465 Melaminivora sp. SC2-9 465 species 1 0 2109913 5733 5 genus 97 0 1 34072 Variovorax Variovorax paradoxus 34073 0 3074 1 species 0 663243 1750 no rank 2 0 1795631 species 1 809 Variovorax sp. PAMC 28711 1 species 941 2126319 0 Variovorax sp. PMC12 1 species 812 436515 0 Variovorax boronicumulans Diaphorobacter 493 2 genus 2 0 238749 1 Diaphorobacter polyhydroxybutyrativorans 1546149 0 491 species 1 4 881 genus 2 0 364316 1 Verminephrobacter Verminephrobacter eiseniae 877 1 species 0 364317 Candidatus Symbiobacter 340 2 genus 1 1 0 1436289 Candidatus Symbiobacter mobilis 1 species 339 0 1436290 0 47420 1 17 1660 genus 4 Hydrogenophaga 510 1 species 0 1763535 Hydrogenophaga crassostreae 1133 2 no rank 2610897 0 Hydrogenophaga sp. PBC 0 795665 573 species 1 0 1842537 560 1 species Hydrogenophaga sp. RAC07 152 24706 44 family 0 1 506 Alcaligenaceae Bordetella 318 genus 17 9716 0 1 517 0 2630031 1 no rank 451 Bordetella sp. H567 0 1697043 species 1 451 0 35814 1 species 356 Bordetella holmesii Bordetella genomosp. 13 0 463040 556 species 1 species 1 624 0 463025 Bordetella bronchialis 384 species 1 0 123899 Bordetella trematum Bordetella pertussis 520 0 species 1 692 Bordetella genomosp. 8 1 species 558 0 1416806 521 0 315 1 species Bordetella avium 1 species 733 0 463024 Bordetella genomosp. 6 Bordetella pseudohinzii 0 1331258 521 species 1 0 103855 species 1 557 Bordetella hinzii Bordetella petrii 0 94624 548 1 species 519 0 807 species 1 Bordetella parapertussis 499 1 species 463014 0 Bordetella flabilis Bordetella genomosp. 9 421 1 species 0 1416803 Bordetella bronchiseptica 0 518 1376 1 species 0 1 1472344 2 genus 657 8 Basilea 0 1472345 649 species 1 Basilea psittacipulmonis 1002 3 genus 20 1 0 290425 Advenella 0 310575 450 species 1 Advenella kashmirensis 0 302406 532 species 1 Advenella mimigardefordensis Oligella 90243 0 1 2 genus 2 585 Oligella urethralis 1 species 583 0 90245 Pusillimonas 305976 0 1 556 2 genus 8 2640016 0 1 no rank 548 0 1007105 species 1 548 Pusillimonas sp. T7-7 1 0 1100891 7 genus 2 626 Paenalcaligenes Paenalcaligenes hominis 619 species 1 0 643674 0 1 359336 459 genus 2 5 Castellaniella Castellaniella defragrans species 1 454 0 75697 Alcaligenes 0 507 1 1505 2 genus 8 1497 species 1 511 0 Alcaligenes faecalis 222 0 1 178 6361 genus 6 Achromobacter 1 species 1053 0 217203 Achromobacter spanius 2626865 0 644 1 no rank Achromobacter sp. AONIH1 0 1758194 644 1 species Achromobacter denitrificans 32002 0 species 1 1252 species 1 2594 0 85698 Achromobacter xylosoxidans Achromobacter insolitus 0 217204 1 species 640 16 530 2 genus 1921582 0 1 Orrella 1851544 0 1 species 514 Orrella dioscoreae 12 2557 3 genus 1 0 29574 Taylorella Taylorella asinigenitalis 1211 species 1 0 84590 Taylorella equigenitalis 1334 species 1 0 29575 Rhodocyclales 125 7884 22 order 1 0 206389 110 5816 12 family 0 2008794 1 Zoogloeaceae Thauera 3123 6 genus 58 0 33057 1 0 96773 1 species 538 Thauera chlorobenzoica 0 2609274 1369 no rank 2 Thauera sp. K11 664 1 species 0 2005884 Thauera sp. MZ1T 705 1 species 0 85643 Thauera aromatica 1 species 577 0 59405 1 species 581 0 1134435 Thauera humireducens Azoarcus 85 2583 genus 5 1 0 12960 0 2629479 1404 2 no rank 0 198107 675 1 species Azoarcus sp. CIB 1 species 729 0 748247 Azoarcus sp. KH32C Azoarcus olearius 0 418699 species 1 569 0 2067960 525 species 1 Azoarcus sp. SY39 1468 6 family 22 0 1 75787 Rhodocyclaceae 1 0 146937 10 2 genus 492 Azospira Azospira oryzae 482 1 species 0 146939 75788 0 1 no rank 388 0 1898103 388 species 1 Rhodocyclaceae bacterium 12 2 genus 566 1 0 551759 Aromatoleum Aromatoleum aromaticum 554 species 1 0 551760 Azonexaceae 0 2008795 1 475 3 family 3 13 472 genus 2 0 1 73029 Dechloromonas Dechloromonas aromatica 459 species 1 259537 0 Nitrosomonadales 0 32003 1 order 44 14441 124 Nitrosomonadaceae 206379 0 1 25 5929 family 12 49 4985 7 genus 0 1 914 Nitrosomonas Nitrosomonas communis species 1 992 0 44574 Nitrosomonas ureae species 1 895 0 44577 Nitrosomonas eutropha 711 species 1 916 0 464 species 1 0 915 Nitrosomonas europaea 2 no rank 1874 2609265 0 Nitrosomonas sp. AL212 species 1 967 153948 0 Nitrosomonas sp. Is79A3 907 species 1 0 261292 Nitrosospira genus 4 919 9 1 0 35798 1 species 244 0 35799 Nitrosospira briensis 1288494 0 1 species 375 Nitrosospira lacus Nitrosospira multiformis 0 1231 species 1 291 870 4 family 0 2772226 1778653 0 1 12 372 2 genus Sulfuriferula 2637784 0 360 no rank 1 Sulfuriferula sp. AH1 0 1985873 1 species 360 Sulfuricella 0 1 935200 498 2 genus 13 0 649841 485 species 1 Sulfuricella denitrificans 39 14 family 5155 1 0 32011 Methylophilaceae 3 genus 1442 12 0 359407 1 Methylotenera Methylotenera mobilis 1 species 494 359408 0 Methylotenera versatilis 0 1055487 936 species 1 343 genus 2 3 1 0 404 Methylobacillus 340 species 1 0 405 Methylobacillus flagellatus 1 0 16 genus 2 397 1 Methylophilus 2630143 0 no rank 1 396 Methylophilus sp. TWE2 396 1 species 0 1662285 Candidatus Methylopumilus 1679002 0 1 9 2319 genus 3 1 species 1685 1581557 0 Candidatus Methylopumilus planktonicus Candidatus Methylopumilus turicensis 625 1 species 0 1581680 Methylovorus 19 615 3 genus 1 0 81682 Methylovorus glucosotrophus 0 266009 309 1 species no rank 1 287 2634027 0 Methylovorus sp. MP688 0 887061 287 species 1 0 1 90627 794 family 5 19 Gallionellaceae 6 genus 2 430 1 0 314343 Sideroxydans species 1 424 0 63745 Sideroxydans lithotrophicus Gallionella 96 0 1 345 2 genus 4 Gallionella capsiferriformans 0 370405 1 species 341 Thiobacillaceae 0 2008790 1 3 family 474 11 0 919 1 463 genus 2 10 Thiobacillus Thiobacillus denitrificans 1 species 453 0 36861 Sterolibacteriaceae 33 5 family 1095 0 2008793 1 Methyloversatilis 0 1 378210 genus 2 492 20 472 1 no rank 2639971 0 0 1842540 1 species 472 Methyloversatilis sp. RAC08 Sulfuritalea 11 2 genus 570 1054211 0 1 Sulfuritalea hydrogenivorans species 1 559 748811 0 1553900 0 1 13 class 6125 6 Oligoflexia 9 order 5 2576 0 213481 1 Bdellovibrionales Bdellovibrionaceae 15 2567 4 family 0 213483 1 0 958 1 2552 genus 3 3 Bdellovibrio Bdellovibrio bacteriovorus 1738 species 1 959 0 Bdellovibrio exovorus 0 453816 species 1 811 0 2024979 1 23 7 order 3543 Bacteriovoracales Halobacteriovoraceae 1652132 0 1 2 3 family 2479 Halobacteriovorax 5 2477 2 genus 0 1 1652133 Halobacteriovorax marinus 0 97084 2472 1 species Bacteriovoracaceae 3 family 1041 6 0 263369 1 1 0 146784 2 2 genus 1035 Bacteriovorax Bacteriovorax stolpii 1033 1 species 0 960 Alphaproteobacteria 28211 0 1 569 class 774387 665 Rickettsiales 766 0 1 56 order 54358 68 no rank 1 3861 0 1699067 Rickettsiales bacterium Ac37b 0 1528098 3861 1 species family 23 26588 57 0 942 1 Anaplasmataceae Ehrlichia 1 0 943 83 11479 genus 6 9320 4 species group 106178 0 0 35795 species 1 2011 Ehrlichia muris 0 779 species 1 2622 Ehrlichia ruminantium Ehrlichia canis 2425 1 species 0 944 2262 species 1 0 945 Ehrlichia chaffeensis 2076 no rank 1 0 106181 species 1 2076 0 391036 Ehrlichia sp. HF tribe 8 11897 952 0 Wolbachia 11897 genus 8 270 1 0 953 0 2640676 11627 no rank 7 Wolbachia endosymbiont of Brugia malayi 1348 species 1 80849 0 0 77038 1 species 3150 Wolbachia endosymbiont of Drosophila simulans 1256 1 species 0 246273 Wolbachia endosymbiont of Cimex lectularius Wolbachia endosymbiont of Onchocerca volvulus 1467 species 1 0 77551 species 1 1427 0 163164 Wolbachia endosymbiont of Drosophila melanogaster Wolbachia endosymbiont of Onchocerca ochengi 100901 0 species 1 1491 Wolbachia sp. wRi 1488 1 species 0 66084 Neorickettsia 0 33993 1 1958 4 genus 30 0 951 1 species 563 Neorickettsia sennetsu Neorickettsia risticii 950 0 764 1 species Neorickettsia helminthoeca 601 1 species 33994 0 genus 4 1197 14 0 1 768 Anaplasma Anaplasma centrale 0 769 species 1 313 293 species 1 0 770 Anaplasma marginale 0 106179 577 1 species group 577 1 species 0 948 Anaplasma phagocytophilum Candidatus Midichloriaceae 1 1650 3 family 0 1328881 1 0 1 411566 13 genus 2 1649 Candidatus Midichloria Candidatus Midichloria mitochondrii 0 234827 1 species 1636 family 28 22191 40 0 775 1 Rickettsiaceae 20618 tribe 25 0 33988 Orientia 1 0 69474 9 3238 2 genus 784 0 3229 species 1 Orientia tsutsugamushi Rickettsia 0 1 780 1596 genus 23 17380 17 species group 6217 0 114277 0 226665 species 1 109 Rickettsia heilongjiangensis 0 35794 1 species 97 Rickettsia slovaca Rickettsia rhipicephali 265 species 1 0 33992 Rickettsia parkeri 131 1 species 0 35792 786 0 species 1 787 Rickettsia akari Rickettsia peacockii 0 47589 544 species 1 Rickettsia massiliae 0 35791 211 1 species 156 1 species 0 781 Rickettsia conorii Rickettsia monacensis 0 109232 species 1 760 0 787 1 species 1105 Rickettsia australis Rickettsia africae 35788 0 128 1 species Rickettsia felis 0 42862 968 species 1 Rickettsia rickettsii 783 0 197 1 species 0 33989 319 1 species Rickettsia amblyommatis 0 33991 164 1 species Rickettsia montanensis Rickettsia japonica species 1 129 0 35790 0 1105106 species 1 147 Rickettsia philipii 1 no rank 2015 114295 0 Rickettsia endosymbiont of Bemisia tabaci 2015 species 1 0 337479 0 1129742 3553 2 species group 0 33990 species 1 2203 Rickettsia bellii Rickettsia canadensis 788 0 1350 species 1 0 114292 2 species group 3999 0 785 1946 1 species Rickettsia typhi Rickettsia prowazekii 0 782 2053 1 species 0 2115980 1 genus 2 1533 4 Candidatus Phycorickettsia Candidatus Phycorickettsia trachydisci 0 2115978 1529 species 1 Parvularculales 0 255473 1 1157 4 order 11 Parvularculaceae 1146 family 3 23 0 255474 1 30 2 genus 1123 0 208215 1 Parvularcula species 1 1093 0 208216 Parvularcula bermudensis 0 356 1 order 210 158788 943 Rhizobiales Brucellaceae 20 family 5433 23 0 118882 1 0 1 234 824 2155 14 genus Brucella 981386 0 172 1 species Brucella vulpis 1 species 70 0 235 Brucella abortus 0 29461 species 1 92 Brucella suis 1 species 104 120576 0 Brucella pinnipedialis 97 1 species 0 120577 Brucella ceti 0 36855 1 species 104 Brucella canis Brucella microti 444163 0 species 1 34 Brucella ovis 0 236 species 1 24 no rank 4 586 0 2632610 Brucella sp. 2002734562 1 species 36 0 1891098 1 species 183 0 1885919 Brucella sp. 141012304 species 1 182 1149952 0 Brucella sp. 09RB8471 185 species 1 1844051 0 Brucella sp. 09RB8910 Brucella melitensis 48 1 species 0 29459 81 genus 5 3255 528 0 1 Ochrobactrum Ochrobactrum anthropi species 1 662 0 529 Ochrobactrum pituitosum 931 species 1 571256 0 Ochrobactrum sp. A44 793 1 species 0 271865 Ochrobactrum pseudogrignonense 0 419475 788 1 species 6 family 3 1282 119043 0 1 Rhodobiaceae 1276 genus 2 30 256616 0 1 Parvibaculum species 1 1246 0 256618 Parvibaculum lavamentivorans Aurantimonadaceae 1 0 255475 13 3399 7 family Martelella 2580 4 genus 90 293088 0 1 Martelella mediterranea 1046 species 1 0 293089 0 2629616 no rank 1 839 839 1 species 0 686597 Martelella sp. AD-3 species 1 605 1486262 0 Martelella endophytica Aureimonas 1 0 414371 genus 2 806 22 0 2615206 no rank 1 784 Aureimonas sp. AU20 1349819 0 1 species 784 Chelatococcaceae 2110 family 4 13 1 0 2036754 Chelatococcus 2097 genus 3 80 0 1 28209 Chelatococcus daeguensis 1 species 895 0 444444 0 2638111 1 no rank 1122 Chelatococcus sp. CO-6 0 1702325 1 species 1122 1461 5 family 3 0 1 45404 Beijerinckiaceae 0 532 1 752 2 genus 21 Beijerinckia Beijerinckia indica 0 533 1 species 731 Methylocella 17 genus 2 706 120652 0 1 689 1 species 0 199596 Methylocella silvestris Methylobacteriaceae 0 1 119045 family 15 13367 45 4889 genus 3 0 2282523 1 species 2974 0 408 Methylobacterium extorquens 1304 species 1 0 223967 Methylobacterium populi 0 29429 1 species 611 Methylobacterium zatmanii Methylobacterium 406 9 genus 7559 1 0 407 1076 1 species 114616 0 Methylobacterium nodulans 711 species 1 0 334852 Methylobacterium oryzae Methylobacterium aquaticum 1203 species 1 0 270351 Methylobacterium phyllosphaerae 698 species 1 0 418223 2623 3 no rank 0 2615210 Methylobacterium sp. C1 1 species 744 0 1479019 0 426117 1284 species 1 Methylobacterium sp. 4-46 Methylobacterium sp. AMS5 1 species 595 0 925818 31998 0 species 1 842 Methylobacterium radiotolerans Microvirga 18 genus 2 874 0 186650 1 856 species 1 1882682 0 Microvirga ossetica 15 family 6 2094 0 1 31993 Methylocystaceae 41 1220 3 genus 133 0 1 Methylocystis Methylocystis bryophila 592 species 1 0 655015 2625913 0 587 no rank 1 0 187303 587 species 1 Methylocystis sp. SC2 Methylosinus 0 425 1 11 genus 2 859 1 species 848 0 426 Methylosinus trichosporium 8758 family 19 133 0 1 45401 Hyphomicrobiaceae Rhodoplanes 0 1 29407 genus 2 1007 18 989 no rank 1 0 2619116 species 1 989 674703 0 Rhodoplanes sp. Z2-YC6860 0 81 1 2150 genus 4 128 Hyphomicrobium no rank 1 688 2619925 0 688 species 1 0 717785 Hyphomicrobium sp. MC1 Hyphomicrobium nitrativorans 0 1427356 557 species 1 777 1 species 0 53399 Hyphomicrobium denitrificans Filomicrobium 10 675 2 genus 0 119044 1 1608628 0 species 1 665 Candidatus Filomicrobium marinum 649 genus 2 9 0 1 1082930 Pelagibacterium Pelagibacterium halotolerans 0 531813 1 species 640 Devosia 0 46913 1 103 genus 4 2680 0 196773 3 no rank 2577 1736675 0 species 1 1041 Devosia sp. A16 Devosia sp. I507 2083786 0 species 1 675 Devosia sp. H5989 0 1643450 1 species 861 0 59282 1 10 841 genus 2 Blastochloris Blastochloris viridis 831 1 species 0 1079 1 0 1068 6 2 genus 623 Rhodomicrobium Rhodomicrobium vannielii 1069 0 species 1 617 0 1 69277 family 20 13043 119 Phyllobacteriaceae 13 genus 2 593 0 449972 1 Chelativorans 2643807 0 580 no rank 1 0 266779 580 1 species Chelativorans sp. BNC1 0 1 68287 8533 genus 9 307 Mesorhizobium Mesorhizobium sp. B7 1074 1 species 0 1670800 1013 no rank 1 0 325217 0 278153 1 species 1013 Mesorhizobium sp. WSM1497 Mesorhizobium loti 0 381 1 species 997 948 1 species 0 2066070 Mesorhizobium japonicum 966 1 species 593909 0 Mesorhizobium opportunistum 872 1 species 536018 0 Mesorhizobium australicum Mesorhizobium amorphae 1 species 1035 0 71433 Mesorhizobium ciceri 39645 0 1 species 1321 Aminobacter 23 968 2 genus 1 0 31988 Aminobacter aminovorans 1 species 945 0 83263 Hoeflea 32 1100 2 genus 1 0 274591 1068 1 no rank 2614931 0 Hoeflea sp. IMCC20628 1068 1 species 0 1620421 245876 0 1 26 genus 2 953 Nitratireductor Nitratireductor basaltis 472175 0 species 1 927 Phyllobacterium 16 2 genus 777 28100 0 1 Phyllobacterium zundukense 0 1867719 1 species 761 Rhizobiaceae 289 53 family 42151 0 82115 1 no rank 10 8480 227292 0 1558 genus 3 20 1 0 106591 Ensifer Ensifer sojae 0 716925 667 1 species 1 species 871 0 106592 Ensifer adhaerens Sinorhizobium 28105 0 1 6922 7 genus 160 Sinorhizobium meliloti 1534 species 1 0 382 2613772 0 2 no rank 1552 Sinorhizobium sp. RAC02 0 1842534 900 species 1 794846 0 species 1 652 Sinorhizobium sp. CCBAU 05631 Sinorhizobium americanum species 1 844 194963 0 0 663276 2150 1 species group 0 380 2150 1 species Sinorhizobium fredii Sinorhizobium medicae species 1 682 110321 0 34 no rank 23424 227290 0 Agrobacterium 123 genus 7 5876 1 0 357 373 0 666 1 species Agrobacterium vitis 2632611 0 no rank 2 1267 0 1842536 735 1 species Agrobacterium sp. RAC06 Agrobacterium sp. H13-3 1 species 532 861208 0 species group 2 3222 0 1183400 Agrobacterium fabrum 1176649 0 587 1 species Agrobacterium tumefaciens 0 358 species 1 2635 Agrobacterium rhizogenes 0 359 598 species 1 Rhizobium 1 0 379 1056 16497 25 genus no rank 19 6664 2613769 0 Rhizobium sp. NT-26 0 1125847 585 species 1 Rhizobium sp. NXC24 0 2048897 608 species 1 0 1703962 9 1 species Rhizobium sp. N1341 Rhizobium sp. CIAT894 0 2020312 488 species 1 0 1981173 411 1 species Rhizobium sp. NXC14 0 1571470 1 species 636 Rhizobium sp. ACO-34A 0 1914541 464 species 1 Rhizobium sp. Y9 species 1 473 0 1301032 Rhizobium sp. IE4771 6 1 species 0 1703967 Rhizobium sp. N741 Rhizobium sp. IRBG74 0 424182 493 1 species 0 1703961 1 species 83 Rhizobium sp. N1314 3 1 species 0 1703968 Rhizobium sp. N871 Rhizobium sp. S41 481 1 species 0 1869170 Rhizobium sp. N324 0 1703969 585 1 species 2028343 0 1 species 645 Rhizobium sp. 10195 0 1703966 1 species 83 Rhizobium sp. N731 0 1703960 7 1 species Rhizobium sp. N113 Rhizobium sp. Kim5 species 1 459 0 2020311 Rhizobium sp. TAL182 145 1 species 0 2020313 0 56730 922 1 species Rhizobium gallicum Rhizobium phaseoli 396 0 1510 1 species Rhizobium tropici 0 398 561 1 species Rhizobium leguminosarum 0 384 species 1 3953 Rhizobium etli 0 29449 1831 1 species Neorhizobium 1 0 1525371 genus 2 1051 17 0 399 1034 species 1 Neorhizobium galegae Liberibacter 1 0 34019 193 6 genus 8843 1 species 1397 34020 0 Candidatus Liberibacter africanus Liberibacter crescens 0 1273132 1 species 2161 0 556287 species 1 1686 Candidatus Liberibacter solanacearum 0 34021 1370 1 species Candidatus Liberibacter asiaticus species 1 2036 309868 0 Candidatus Liberibacter americanus 1 0 323620 13 1115 genus 2 Shinella 0 2643062 no rank 1 1102 Shinella sp. HZN7 879274 0 1102 1 species 0 119042 6 no rank 2853 Pseudorhodoplanes 1 0 1734920 901 2 genus 21 0 1235591 880 1 species Pseudorhodoplanes sinuspersici genus 2 1044 26 1572860 0 1 Hartmannibacter Hartmannibacter diazotrophicus 1018 1 species 0 1482074 Methyloceanibacter 0 1 1484898 genus 2 908 30 Methyloceanibacter caenitepidi 1384459 0 1 species 878 Bartonellaceae 772 0 1 34200 18 family 30 773 0 1 34170 17 genus 738 Bartonella Bartonella tribocorum species 1 1941 0 85701 Bartonella vinsonii 1766 1 species 0 33047 0 1318743 1940 species 1 Bartonella ancashensis Bartonella australis species 1 1140 388640 0 Bartonella grahamii 33045 0 1936 1 species Bartonella bacilliformis 2277 1 species 0 774 Bartonella henselae 1813 species 1 0 38323 2645622 0 14933 no rank 6 2498 species 1 1933912 0 Bartonella sp. Raccoon60 Bartonella sp. A1379B species 1 2521 0 1933910 1933906 0 2464 1 species Bartonella sp. JB15 2463 species 1 1933907 0 Bartonella sp. JB63 Bartonella sp. 1-1C 515256 0 species 1 2461 species 1 2526 1933904 0 Bartonella sp. WD16.2 species 1 2266 0 56426 Bartonella clarridgeiae Bartonella apis 1743 species 1 0 1686310 species 1 1677 803 0 Bartonella quintana 49 7 family 2981 0 1 335928 Xanthobacteraceae Xanthobacter 1 0 279 1141 2 genus 25 Xanthobacter autotrophicus 0 280 1 species 1116 2 genus 989 21 152053 0 1 Starkeya 0 921 1 species 968 Starkeya novella 0 1 6 21 802 2 genus Azorhizobium Azorhizobium caulinodans 1 species 781 7 0 Bradyrhizobiaceae 0 41294 1 family 26 24713 209 Oligotropha 9 genus 2 732 0 40136 1 species 1 723 0 40137 Oligotropha carboxidovorans Bosea 85413 0 1 genus 5 4029 127 1 species 1011 0 1526658 Bosea vaviloviae 2891 no rank 3 0 2653178 Bosea sp. PAMC 26642 0 1792307 species 1 794 Bosea sp. RAC05 1070 1 species 0 1842539 Bosea sp. AS-1 0 2015316 1027 1 species 745 genus 2 13 0 1 1649510 Variibacter Variibacter gotjawalensis 732 species 1 0 1333996 Rhodopseudomonas genus 2 5800 54 0 1073 1 Rhodopseudomonas palustris 1076 0 1 species 5746 Bradyrhizobium 1 0 374 466 12080 11 genus 0 375 1554 1 species Bradyrhizobium japonicum 1 species 1689 1355477 0 Bradyrhizobium diazoefficiens Bradyrhizobium oligotrophicum 1 species 1123 0 44255 922 1 species 0 1274631 Bradyrhizobium icense 0 2631580 6326 6 no rank 0 1223566 929 species 1 Bradyrhizobium sp. CCGE-LA001 0 115808 1088 species 1 Bradyrhizobium sp. ORS 285 Bradyrhizobium sp. BTAi1 0 288000 species 1 1117 Bradyrhizobium sp. ORS 278 1 species 1158 0 114615 species 1 990 376 0 Bradyrhizobium sp. species 1 1044 2057741 0 Bradyrhizobium sp. SK17 0 1 911 3 genus 1118 20 Nitrobacter Nitrobacter hamburgensis 0 912 610 1 species 0 913 488 1 species Nitrobacter winogradskyi Caulobacterales order 20 10744 71 1 0 204458 Caulobacteraceae 180 10673 19 family 1 0 76892 1 0 76890 12 472 2 genus Asticcacaulis 0 78587 460 species 1 Asticcacaulis excentricus Caulobacter 4839 genus 6 121 0 75 1 Caulobacter segnis 0 88688 1 species 803 669 species 1 0 69395 Caulobacter henricii 938 1 no rank 2648921 0 938 species 1 0 366602 Caulobacter sp. K31 Caulobacter vibrioides 155892 0 1414 species 1 894 species 1 0 69666 Caulobacter mirabilis Phenylobacterium 13 978 2 genus 20 0 1 0 284016 species 1 965 Phenylobacterium zucineum 181 3569 7 genus 0 41275 1 Brevundimonas Brevundimonas vesicularis 0 41276 species 1 500 Brevundimonas subvibrioides 74313 0 578 species 1 1 species 543 0 588932 Brevundimonas naejangsanensis 1767 no rank 3 0 2622653 Brevundimonas sp. DS20 1 species 492 0 1532555 0 1827469 511 1 species Brevundimonas sp. GW460-12-10-14-LB2 0 1938605 764 species 1 Brevundimonas sp. LM2 81440 0 635 no rank 1 0 1759059 1 species 635 Caulobacteraceae bacterium OTSz_A_272 4104 order 6 0 2800060 1 0 69657 60 4104 6 family Hyphomonadaceae 0 2723 1 genus 2 2113 36 Hirschia 2724 0 2077 species 1 Hirschia baltica 0 1 85 58 1931 3 genus Hyphomonas Hyphomonas neptunium species 1 714 0 81032 1159 no rank 1 0 2630699 1906738 0 species 1 1159 Hyphomonas sp. Mor2 5175 order 9 16 0 1 1921002 Holosporales 7 1984 family 3 2100208 0 1 Caedimonadaceae 1 0 1509243 2 genus 1977 11 Candidatus Nucleicultrix 1 species 1966 0 1509244 Candidatus Nucleicultrix amoebiphila 0 1777752 1 20 3 family 1411 Candidatus Paracaedibacteraceae 1 0 1521255 16 1391 2 genus Candidatus Paracaedibacter Candidatus Paracaedibacter acanthamoebae 1375 species 1 0 91604 12 1764 family 2 0 44746 1 Holosporaceae no rank 1 1752 204454 0 1752 1 species 86106 0 endosymbiont of Acanthamoeba sp. UWC8 1 0 204455 63592 order 92 170 Rhodobacterales 63422 91 family 994 0 31989 1 Rhodobacteraceae 1284657 0 1266 genus 1 Planktomarina temperata species 1 1266 0 1284658 Jannaschia 188905 0 1 884 2 genus 6 0 2645469 1 no rank 878 Jannaschia sp. CCS1 0 290400 1 species 878 0 1 1609958 17 genus 2 1183 Confluentimicrobium 1 no rank 1166 2643318 0 1166 species 1 0 1609966 Confluentimicrobium sp. EMB200-NS6 0 263377 2 genus 2174 1229727 0 1 species 1110 Thiobacimonas profunda 0 2640570 1064 no rank 1 Yangia sp. CCB-MM3 0 1792508 1064 1 species genus 1 2 0 436357 Thalassococcus Ruegeria 0 1 97050 30 2263 3 genus 0 89184 1462 species 1 Ruegeria pomeroyi 1 no rank 771 0 2625375 Ruegeria sp. TM1040 species 1 771 0 292414 Labrenzia 1 0 478070 107 genus 4 2950 187304 0 906 1 species Labrenzia aggregata 1937 no rank 2 0 2648686 1 species 1071 0 2021862 Labrenzia sp. VG12 Labrenzia sp. CP4 1 species 866 0 1674922 107 genus 5 6972 0 1 302485 Phaeobacter species 1 704 0 1844006 Phaeobacter porticola 60890 0 species 1 1906 Phaeobacter gallaeciensis Phaeobacter inhibens 2642 species 1 0 221822 0 1580596 1613 species 1 Phaeobacter piscinae 1 0 1060 genus 5 4764 37 Rhodobacter 1795 no rank 2 196779 0 1850250 0 1 species 912 Rhodobacter sp. LPB0142 Rhodobacter sp. CZR27 883 1 species 0 2033869 Rhodobacter capsulatus 843 species 1 0 1061 Rhodobacter sphaeroides 1 species 2089 1063 0 Paracoccus 0 265 1 118 6829 9 genus 0 34003 1 species 747 Paracoccus aminophilus 0 147645 species 1 1078 Paracoccus yeei Paracoccus zhejiangensis species 1 918 0 1077935 786 species 1 2065379 0 Paracoccus sp. CBA4604 Paracoccus contaminans 1 species 610 0 1945662 0 246570 767 1 no rank species 1 767 0 1529068 Paracoccus sp. BM15 0 266 997 species 1 Paracoccus denitrificans 1 species 808 0 34004 Paracoccus aminovorans 905 genus 2 7 0 1 1579315 Halocynthiibacter Halocynthiibacter arcticus species 1 898 0 1579316 0 1 92944 3 genus 1187 16 Ketogulonicigenium species 1 616 92945 0 Ketogulonicigenium vulgare Ketogulonicigenium robustum 1 species 555 0 92947 no rank 2 1352 58840 0 0 1904441 665 species 1 Rhodobacteraceae bacterium species 1 687 0 2033435 Rhodobacteraceae bacterium QY30 genus 2 1384 7 0 1 360528 Pelagibaca Pelagibaca abyssi 0 1250539 1377 species 1 Pannonibacter 926 genus 2 21 0 227873 1 905 1 species 121719 0 Pannonibacter phragmitetus genus 2 597 1 1 0 1759396 Marivivens 0 2622455 596 1 no rank Marivivens sp. JLT3646 596 1 species 0 1920883 genus 4 2248 31 53945 0 1 Octadecabacter Octadecabacter arcticus 1 species 751 0 53946 1458307 0 species 1 672 Octadecabacter temperatus Octadecabacter antarcticus species 1 794 1217908 0 genus 2 1236 6 1 0 58842 Sagittula 0 2624628 1230 no rank 1 0 2009329 species 1 1230 Sagittula sp. P11 Dinoroseobacter 2 genus 982 9 0 309512 1 215813 0 973 1 species Dinoroseobacter shibae Antarctobacter 0 1 74032 9 genus 2 873 Antarctobacter heliothermus 864 1 species 0 74033 2211641 0 genus 1 973 Loktanella vestfoldensis 973 1 species 0 245188 Celeribacter 1 0 875170 28 5 genus 3879 0 1397108 species 1 723 Celeribacter marinus Celeribacter ethanolicus 863 species 1 1758178 0 Celeribacter indicus 1208324 0 1166 1 species 1 species 1099 0 1411902 Celeribacter manganoxidans Roseovarius 74030 0 1 911 genus 2 13 species 1 898 0 215743 Roseovarius mucosus 12 genus 2 1038 0 1 1097466 Defluviimonas Defluviimonas alba 0 1335048 1026 species 1 245186 0 5 1 genus Loktanella 159345 0 1 1020 2 genus 7 Roseibacterium species 1 1013 0 159346 Roseibacterium elongatum 9 1781 3 genus 2433 0 1 Roseobacter Roseobacter denitrificans species 1 893 0 2434 0 42443 species 1 879 Roseobacter litoralis 1 0 119541 5 706 2 genus Rhodobaca 0 441209 701 species 1 Rhodobaca barguzinensis Leisingera 1239 2 genus 3 0 1 191028 Leisingera methylohalidivorans species 1 1236 0 133924 Rhodovulum 0 34008 1 genus 4 3491 57 2 no rank 1925 0 2631432 Rhodovulum sp. P5 0 1564506 950 species 1 Rhodovulum sp. MB263 species 1 975 308754 0 Rhodovulum sulfidophilum 35806 0 1 species 1509 1649279 0 1 genus 800 0 379347 800 species 1 Ruegeria mobilis 784 1 genus 0 285107 0 1915078 species 1 784 Thioclava nitratireducens Tateyamaria 0 299261 1 7 2 genus 989 Tateyamaria omphalii 982 1 species 0 299262 Sulfitobacter 0 60136 1 7 genus 3 2402 196795 0 1 no rank 1345 Sulfitobacter sp. AM1-D1 1345 1 species 0 1917485 species 1 1050 0 1402135 Sulfitobacter pseudonitzschiae Marinovum 15 genus 2 1433 367771 0 1 0 42444 1418 species 1 Marinovum algicola 82117 0 no rank 8 8150 62654 0 4822 clade 2 28 4822 genus 2 767891 0 1 Candidatus Puniceispirillum 0 767892 4794 1 species Candidatus Puniceispirillum marinum 1632780 0 1 43 genus 2 1048 Phreatobacter 0 1868589 1005 1 species Phreatobacter sp. S-12 Polymorphum 0 1 991903 1301 genus 2 58 1243 1 species 0 991904 Polymorphum gilvum Micavibrio genus 2 979 11 0 1 213485 968 species 1 349221 0 Micavibrio aeruginosavorus Magnetococcales 0 1 1191478 4 order 654 4 Magnetococcaceae 1191479 0 1 1 family 3 650 Magnetococcus 1 649 2 genus 162171 0 1 Magnetococcus marinus 1124597 0 648 1 species Rhodospirillales 253 42762 66 order 204441 0 1 Acetobacteraceae 433 0 1 150 14920 34 family Neoasaia 1 genus 2 315 1 0 320496 Neoasaia chiangmaiensis 0 320497 species 1 314 648 genus 2 11 0 89583 1 Gluconacetobacter Gluconacetobacter diazotrophicus 0 33996 637 species 1 Gluconobacter 17 1057 3 genus 0 441 1 0 318683 346 1 species Gluconobacter albidus 694 species 1 0 442 Gluconobacter oxydans Asaia 1 0 91914 345 2 genus 4 341 1 species 0 91915 Asaia bogorensis Acidiphilium 1 0 522 1685 3 genus 47 0 62140 species 1 845 Acidiphilium multivorum Acidiphilium cryptum 793 1 species 0 524 Granulibacter genus 2 890 13 0 1 364409 877 1 species 0 364410 Granulibacter bethesdensis 65 5 genus 2223 0 1434011 1 Komagataeibacter 0 1177712 species 1 491 Komagataeibacter medellinensis species 1 733 0 28448 Komagataeibacter xylinus Komagataeibacter nataicola 536 species 1 0 265960 0 33995 398 species 1 Komagataeibacter europaeus Acetobacter 61 4929 genus 8 1 0 434 Acetobacter persici 0 1076596 1 species 421 Acetobacter oryzifermentans 0 1633874 1 species 532 Acetobacter tropicalis 104102 0 1 species 591 1 species 389 446692 0 Acetobacter senegalensis 400 1 subgenus 151157 0 Acetobacter aceti 400 1 species 435 0 0 65959 533 species 1 Acetobacter pomorum Acetobacter pasteurianus species 1 2002 0 438 genus 2 316 1 1 0 1602345 Parasaccharibacter Parasaccharibacter apium 315 1 species 0 1510841 153497 0 genus 1 467 467 species 1 0 153496 Kozakia baliensis Roseomonas 44 1895 3 genus 0 1 125216 Roseomonas gilardii species 1 989 257708 0 1 no rank 862 2617492 0 Roseomonas sp. FDAARGOS_362 0 2018065 1 species 862 Rhodospirillaceae 0 41295 1 351 27589 31 family Tistrella 171436 0 1 33 2 genus 1485 Tistrella mobilis 0 171437 1452 species 1 3 genus 2228 29 0 1 1081 Rhodospirillum 1085 species 1 0 1085 Rhodospirillum rubrum Rhodospirillum centenum 0 34018 1114 1 species Niveispirillum genus 2 884 6 0 1 1543704 species 1 878 1612173 0 Niveispirillum cyanobacteriorum Magnetospirillum 5 genus 5073 244 0 1 13134 Magnetospirillum gryphiswaldense 1 species 1375 0 55518 species 1 1042 84159 0 Magnetospirillum magneticum no rank 2 2412 0 2617991 Magnetospirillum sp. ME-1 1 species 1239 0 1639348 Magnetospirillum sp. XM-1 species 1 1173 0 1663591 Haematospirillum 5 749 genus 2 0 1804663 1 0 1549855 744 1 species Haematospirillum jordaniae Pararhodospirillum 0 1 1612157 10 2 genus 733 0 1084 1 species 723 Pararhodospirillum photometricum Azospirillum 7722 5 genus 235 191 0 1 2633 1 species 0 193 Azospirillum lipoferum Azospirillum brasilense 2478 species 1 0 192 Azospirillum thiophilum 0 528244 1579 species 1 Azospirillum humicireducens 0 1226968 797 1 species Magnetospira 2 genus 1083 11 1182780 0 1 1072 no rank 1 2685734 0 1072 species 1 0 1288970 Magnetospira sp. QH-2 Nitrospirillum 1 0 1543705 21 1337 2 genus Nitrospirillum amazonense 1 species 1316 0 28077 3 3413 genus 2 0 1 1263978 Candidatus Endolissoclinum 3410 1 species 0 1263979 Candidatus Endolissoclinum faulkneri Thalassospira 168934 0 1 56 genus 3 2531 2048283 0 1 species 1194 Thalassospira sp. CSC3H3 Thalassospira xiamenensis 1281 species 1 220697 0 2800059 0 1043 order 2 1043 family 2 2800061 0 Maricaulis 74317 0 1 1043 2 genus 44 Maricaulis maris 0 74318 1 species 999 Sphingomonadales 1 0 204457 258 56481 82 order 335929 0 1 157 22 family 18584 Erythrobacteraceae 0 2800681 2068 genus 2 Erythrobacter gangjinensis 985 1 species 502682 0 Erythrobacter atlanticus species 1 1083 0 1648404 1 0 361177 4 genus 1995 194 Altererythrobacter 0 1267766 species 1 579 Altererythrobacter atlanticus Altererythrobacter ishigakiensis 1 species 510 0 476157 Altererythrobacter epoxidivorans species 1 712 0 361183 4538 no rank 6 0 2800788 213 2767 3 genus 0 1 1041 Erythrobacter 1810 1 species 0 39960 Erythrobacter litoralis species 1 744 0 1112 Porphyrobacter neustonensis 96 1771 genus 3 1 0 1111 Porphyrobacter no rank 2 1675 0 2683265 0 2023229 species 1 803 Porphyrobacter HT-58-2 Porphyrobacter sp. LM 6 1896196 0 872 species 1 2800686 0 1171 2 genus 1 species 569 0 1982042 Altererythrobacter mangrovi Altererythrobacter dongtanensis 0 692370 602 1 species Croceicoccus 1626 genus 3 42 1295327 0 1 0 450378 975 species 1 Croceicoccus marinus 0 1348774 609 species 1 Croceicoccus naphthovorans 800 genus 1 0 2800685 Altererythrobacter marensis 543877 0 800 species 1 0 1855416 5351 genus 2 species 1 4357 0 192812 Erythrobacter flavus Erythrobacter seohaensis 0 266951 1 species 994 genus 1 878 2800682 0 0 645517 species 1 878 Altererythrobacter namhicola 437 37639 family 59 1 0 41297 Sphingomonadaceae 32 3 genus 1585 1 0 1434046 Sphingorhabdus 1553 no rank 2 0 2614947 Sphingorhabdus sp. M41 species 1 752 0 1806885 Sphingorhabdus sp. YGSMI21 0 2077182 801 species 1 Blastomonas 0 1 150203 genus 2 877 3 2626550 0 no rank 1 874 0 1842535 874 1 species Blastomonas sp. RAC04 740 genus 1 2685927 0 Sphingomonas sp. JJ-A5 740 1 species 0 1921510 Rhizorhabdus genus 2 862 10 1 0 1649486 Rhizorhabdus dicambivorans 1850238 0 852 species 1 98 3140 genus 5 0 1 165696 Novosphingobium 649 species 1 48935 0 Novosphingobium aromaticivorans species 1 760 0 205844 Novosphingobium pentaromativorans no rank 1 748 2644732 0 Novosphingobium sp. PP1Y 0 702113 748 1 species 0 158500 species 1 885 Novosphingobium resinovorum 0 1 165695 293 7889 genus 15 Sphingobium Sphingobium chlorophenolicum 0 46429 1 species 538 Sphingobium yanoikuyae 906 1 species 0 13690 Sphingobium baderi 466 1 species 0 1332080 332056 0 1 species 579 Sphingobium japonicum Sphingobium herbicidovorans 76947 0 400 species 1 Sphingobium cloacae 509 1 species 0 120107 no rank 6 3164 0 2611147 Sphingobium sp. RAC03 1843368 0 552 species 1 0 407020 species 1 468 Sphingobium sp. MI1205 Sphingobium sp. TKS 0 1315974 598 species 1 439 1 species 0 1855519 Sphingobium sp. EP60837 Sphingobium sp. SYK-6 563 1 species 0 627192 species 1 544 484429 0 Sphingobium sp. YBL2 Sphingobium hydrophobicum 0 1673076 1 species 537 1 species 497 0 332055 Sphingobium indicum 7 916 2 genus 0 72173 1 Citromicrobium 0 2630544 1 no rank 909 Citromicrobium sp. JL477 1 species 909 0 1634516 2709685 0 710 1 genus 0 266812 710 1 species Sphingorhabdus flavimaris 7 2 genus 1510 541 0 1 Zymomonas 542 0 1 species 1503 Zymomonas mobilis Sphingopyxis 208 7278 10 genus 1 0 165697 0 267128 species 1 841 Sphingopyxis granuli 0 33050 species 1 1276 Sphingopyxis macrogoltabida 563 1 species 0 117207 Sphingopyxis alaskensis Sphingopyxis fribergensis 1 species 565 1515612 0 617 species 1 0 33052 Sphingopyxis terrae 3208 no rank 4 0 2614943 1 species 697 0 1357916 Sphingopyxis sp. QXT-31 1913578 0 1 species 1242 Sphingopyxis sp. LPB0140 0 1866325 704 species 1 Sphingopyxis sp. MG species 1 565 0 292913 Sphingopyxis sp. 113P3 Sphingomonas 0 13687 1 11695 15 genus 364 1108 2 species 2286 1 0 160791 Sphingomonas wittichii 1178 1 strain 1283312 0 Sphingomonas sp. DC-6 93064 0 1 species 725 Sphingomonas koreensis 0 1560345 674 species 1 Sphingomonas panacis Sphingomonas hengshuiensis 0 1609977 species 1 673 0 152682 1 species 700 Sphingomonas melonis Sphingomonas taxi 0 1549858 708 species 1 Sphingomonas sanxanigenens 0 397260 species 1 939 4626 6 no rank 0 196159 Sphingomonas sp. Cra20 0 1327635 species 1 649 1640 species 1 0 1390395 Sphingomonas sp. LK11 Sphingomonas sp. KC8 0 1030157 577 1 species Sphingomonas sp. LM7 species 1 570 0 1938607 Sphingomonas sp. NIC1 588 species 1 0 1961362 Sphingomonas sp. MM-1 745310 0 1 species 602 0 54526 1 9 order 366714 61 Pelagibacterales Pelagibacteraceae 0 1655514 1 144 342572 6 family Candidatus Pelagibacter 1 0 198251 3 genus 151320 51 2647897 0 1 no rank 22772 22772 1 species 1002672 0 Candidatus Pelagibacter sp. IMCC9063 0 198252 128497 1 species Candidatus Pelagibacter ubique 2 no rank 191108 1655516 0 859653 0 171558 1 species alpha proteobacterium HIMB5 alpha proteobacterium HIMB59 1 species 19550 0 744985 Candidatus Fonsibacter 2 genus 24081 65 0 2045213 1 24016 1 species 0 1925548 Candidatus Fonsibacter ubiquis 1807140 0 6 class 1575 Acidithiobacillales 225057 0 1 1575 6 order 47 1 0 225058 24 1528 family 5 Acidithiobacillaceae 53 1504 genus 4 0 1 119977 Acidithiobacillus Acidithiobacillus ferrivorans 470 species 1 0 160808 Acidithiobacillus caldus 0 33059 1 species 512 Acidithiobacillus ferrooxidans 1 species 469 0 920 1311 class 909 842626 1236 0 1 Gammaproteobacteria 32 26689 order 21 118969 0 1 Legionellales Legionellaceae 15 family 23130 59 0 1 444 Legionella 1 0 445 21708 12 genus 188 species 1 2031 0 450 Legionella longbeachae 1372 1 species 0 449 Legionella hackeliae Legionella spiritensis 635 1 species 452 0 Legionella endosymbiont of Polyplax serrata species 1 2338 0 2005262 Legionella lansingensis 1259 species 1 0 45067 Legionella sainthelensi 28087 0 2024 species 1 1358 species 1 0 1867846 Legionella clemsonensis 0 29423 species 1 1191 Legionella oakridgensis Legionella fallonii 0 96230 1772 species 1 Legionella waltersii species 1 1536 66969 0 Legionella pneumophila 0 446 species 1 6004 Tatlockia 1 0 465 genus 2 1363 19 1344 species 1 0 451 Tatlockia micdadei Coxiellaceae 51 3527 family 5 0 118968 1 2301 3 genus 31 0 776 1 Coxiella 2676648 0 1193 no rank 1 Coxiella endosymbiont of Amblyomma americanum species 1 1193 0 325775 species 1 1077 777 0 Coxiella burnetii 0 134284 1 no rank 1175 Coxiella-like endosymbiont 1175 species 1 0 1592897 652 order 3 0 135615 868 0 1 3 family 652 13 Cardiobacteriaceae 639 2 genus 13 1 0 869 Dichelobacter Dichelobacter nodosus 0 870 species 1 626 6 order 3948 13 1240482 0 1 Orbales 5 family 3935 25 0 1 1240483 Orbaceae Frischella 1335631 0 1 1706 genus 2 6 1267021 0 1700 species 1 Frischella perrara 1193503 0 1 2 genus 2204 4 Gilliamella 2200 1 species 0 1196095 Gilliamella apicola 0 135625 1 order 33 22059 11 Pasteurellales family 32 22048 168 0 1 712 Pasteurellaceae Histophilus 2 2 genus 1363 1 0 214906 Histophilus somni 1361 species 1 0 731 745 0 1 44 3 genus 3914 Pasteurella 0 754 1 species 1075 Pasteurella dagmatis 0 747 1 species 2795 Pasteurella multocida 13 2176 5 genus 1 0 713 Actinobacillus Actinobacillus equuli 0 718 579 species 1 0 67854 species 1 370 Actinobacillus succinogenes 0 716 521 species 1 Actinobacillus suis Actinobacillus pleuropneumoniae 693 1 species 0 715 6 genus 2 977 1 0 476528 Bibersteinia species 1 971 0 47735 Bibersteinia trehalosi 8 1297 3 genus 0 1 416916 Aggregatibacter Aggregatibacter actinomycetemcomitans species 1 594 0 714 Aggregatibacter aphrophilus 0 732 species 1 695 Gallibacterium 8 2 genus 811 0 155493 1 750 0 803 species 1 Gallibacterium anatis Mannheimia 4 genus 2332 16 1 0 75984 Mannheimia varigena 0 85404 950 species 1 species 1 752 0 75985 Mannheimia haemolytica no rank 1 614 2645054 0 Mannheimia sp. USDA-ARS-USMARC-1261 614 species 1 0 1432056 7 2 genus 1362 0 1 2094023 Glaesserella Glaesserella parasuis 738 0 species 1 1355 Basfia 697331 0 1 5 462 genus 2 457 species 1 0 157673 [Mannheimia] succiniciproducens Haemophilus 1 0 724 genus 6 7186 54 745 species 1 729 0 Haemophilus parainfluenzae 751 no rank 1 2609962 0 1 species 751 712310 0 Haemophilus sp. oral taxon 036 584 species 1 0 249188 Haemophilus pittmaniae 0 730 1497 species 1 [Haemophilus] ducreyi 727 0 species 1 3555 Haemophilus influenzae 52 44 order 170960 0 135623 1 Vibrionales 0 1 641 223 family 43 170908 Vibrionaceae Photobacterium 0 1 657 14 4 genus 11614 Photobacterium profundum 1292 species 1 0 74109 Photobacterium gaetbulicola 595 1 species 0 1295392 Photobacterium damselae 0 38293 9713 1 species Paraphotobacterium 2042066 0 1 2 genus 4335 15 Paraphotobacterium marinum species 1 4320 0 1755811 1 0 246861 2 genus 741 1 Grimontia Grimontia hollisae 740 species 1 673 0 genus 30 149295 944 0 1 662 Vibrio 1431 species 1 0 1534743 Vibrio hyugaensis Vibrio tritonius 1 species 981 0 1435069 Vibrio qinghaiensis 720 1 species 2025808 0 988 1 species 0 687 Vibrio gazogenes 0 45658 species 1 1393 Vibrio scophthalmi 0 2614977 1369 no rank 2 Vibrio sp. 2521-89 483 1 species 0 2014742 0 1116375 886 1 species Vibrio sp. EJY3 60905 species group 10 717610 0 0 766224 1547 1 species Vibrio jasicida Vibrio alginolyticus 3702 species 1 663 0 species 1 3335 0 669 Vibrio harveyi 2426 2 species subgroup 0 2315253 Vibrio diabolicus 0 50719 species 1 1591 0 150340 835 1 species Vibrio antiquarius 696485 0 3346 species 1 Vibrio owensii Vibrio rotiferianus 1705 species 1 0 190895 39830 species 1 0 680 Vibrio campbellii 3359 1 species 0 670 Vibrio parahaemolyticus 0 691 1 species 1655 Vibrio natriegens Vibrio vulnificus 0 672 3292 1 species Vibrio breoganii 1 species 708 0 553239 674 0 929 1 species Vibrio mimicus 676 0 778 1 species Vibrio fluvialis Vibrio furnissii 0 29494 1 species 921 1519 species group 1 1891919 0 Vibrio tubiashii 29498 0 1 species 1519 1805 species 1 0 55601 Vibrio anguillarum 0 190893 species 1 64144 Vibrio coralliilyticus Vibrio tapetis species 1 1246 0 52443 0 666 1 species 1707 Vibrio cholerae 2380 1 species 28173 0 Vibrio nigripulchritudo Vibrio tasmaniensis 1 species 1135 0 212663 4 genus 4700 20 511678 0 1 Aliivibrio 1 species 1918 80852 0 Aliivibrio wodanis Aliivibrio fischeri 0 668 species 1 1518 Aliivibrio salmonicida 1 species 1244 0 40269 14 no rank 15380 0 118884 14 genus 2 548 0 1608298 1 Thiolapillus Thiolapillus brandeum 0 1076588 1 species 534 3 genus 4877 89 0 655184 1 Candidatus Thioglobus Candidatus Thioglobus autotrophicus 0 1705394 1 species 1535 Candidatus Thioglobus singularis 1427364 0 species 1 3253 0 32036 clade 4 5450 genus 2 1743 24 1541743 0 1 Candidatus Ruthia 1 species 1719 0 386487 Candidatus Ruthia magnifica Bathymodiolus septemdierum thioautotrophic gill symbiont 0 113267 1438 species 1 410330 0 species 1 2269 Calyptogena okutanii thioautotrophic gill symbiont 0 1 349742 2 genus 928 16 Sedimenticola Sedimenticola thiotaurini species 1 912 1543721 0 0 1 1524249 genus 2 939 7 Pseudohongiella 0 1249552 932 1 species Pseudohongiella spirulinae clade 1 2638 0 198346 Candidatus Baumannia cicadellinicola 0 186490 1 species 2638 1408 no rank 2 33811 0 endosymbiont of unidentified scaly snail isolate Monju species 1 632 0 1248727 gamma proteobacterium HdN1 776 1 species 83406 0 0 135622 1 219 128144 order 106 Alteromonadales 0 267891 1 21 3 family 1698 Moritellaceae 1 0 58050 1677 genus 2 8 Moritella 80854 0 1669 species 1 Moritella viscosa Colwelliaceae 11224 family 9 33 0 1 267889 Colwellia 0 28228 1 9615 6 genus 57 3 no rank 5630 0 196834 Colwellia sp. PAMC 20917 species 1 2015 0 1816218 Colwellia sp. MT41 58049 0 species 1 1666 Colwellia sp. PAMC 21821 1 species 1949 0 1816219 Colwellia psychrerythraea 0 28229 1 species 2040 Colwellia beringensis 1 species 1888 1967665 0 1518149 0 1 13 1576 2 genus Thalassotalea 0 1763536 1 species 1563 Thalassotalea crassostreae family 3 511 10 0 1 267892 Ferrimonadaceae 9 501 2 genus 1 0 44011 Ferrimonas 0 44012 species 1 492 Ferrimonas balearica 0 267890 1 family 25 19690 45 Shewanellaceae Shewanella 19645 genus 24 275 22 0 1 Shewanella halifaxensis 0 271098 1 species 1295 Shewanella piezotolerans 0 404011 1 species 890 species 1 1936 0 62322 Shewanella baltica Shewanella sediminis 1 species 853 0 271097 0 196818 3671 no rank 6 species 1 605 0 2029986 Shewanella sp. WE21 0 351745 species 1 876 Shewanella sp. W3-18-1 Shewanella sp. MR-4 60480 0 species 1 504 Shewanella sp. ANA-3 1 species 541 94122 0 species 1 650 0 2059264 Shewanella sp. Pdp11 60481 0 495 1 species Shewanella sp. MR-7 60478 0 493 1 species Shewanella amazonensis species 1 1051 0 60961 Shewanella woodyi 0 2018305 1 species 456 Shewanella bicestrii 0 24 species 1 984 Shewanella putrefaciens Shewanella denitrificans 1 species 732 0 192073 species 1 1190 56812 0 Shewanella frigidimarina Shewanella oneidensis 498 1 species 0 70863 species 1 473 0 359303 Shewanella loihica Shewanella violacea 60217 0 1 species 940 Shewanella psychrophila 225848 0 1434 species 1 0 93973 species 1 1349 Shewanella japonica Shewanella marisflavi 0 260364 1 species 441 684 species 1 0 70864 Shewanella pealeana Idiomarinaceae 0 267893 1 2045 family 6 7 Idiomarina genus 5 2038 68 1 0 135575 899 2 no rank 2614829 0 Idiomarina sp. X4 0 2055892 485 1 species Idiomarina sp. OT37-5b 0 2100422 species 1 414 1096243 0 species 1 529 Idiomarina piscisalsi 542 species 1 0 135577 Idiomarina loihiensis Alteromonadaceae 40194 family 30 68 0 1 72275 160 10 genus 6586 2742 0 1 Marinobacter species 1 566 0 1420916 Marinobacter similis Marinobacter salarius 1420917 0 825 species 1 0 330734 625 1 species Marinobacter psychrophilus Marinobacter adhaerens 730 1 species 0 1033846 0 1874317 species 1 593 Marinobacter salinus Marinobacter hydrocarbonoclasticus species 1 948 0 2743 no rank 3 2139 0 83889 Marinobacter sp. BSs20148 652 species 1 0 490759 1 species 724 0 1749259 Marinobacter sp. LQ44 1 species 763 1671721 0 Marinobacter sp. CP1 0 261825 1 2 764 2 genus Agarivorans species 1 762 0 680279 Agarivorans gilvus Lacimicrobium 0 1751872 1 797 genus 2 7 0 1526571 790 1 species Lacimicrobium alkaliphilum Alteromonas 27529 genus 10 171 0 1 226 2614992 0 3072 3 no rank 0 1777491 species 1 870 Alteromonas sp. Mac1 2058133 0 1 species 1025 Alteromonas sp. MB-3u-76 Alteromonas sp. RW2A1 1917158 0 1 species 1177 Alteromonas mediterranea 3059 species 1 0 314275 1 species 15855 28108 0 Alteromonas macleodii Alteromonas addita species 1 963 0 287094 715451 0 species 1 1101 Alteromonas naphthalenivorans Alteromonas australica 0 589873 species 1 2075 1233 species 1 0 233316 Alteromonas stellipolaris Paraglaciecola 2077 genus 2 9 1621534 0 1 Paraglaciecola psychrophila 0 326544 species 1 2068 0 89404 1 36 genus 3 2373 Glaciecola 1157 1 no rank 0 2618684 Glaciecola sp. 4H-3-7+YE-5 0 983545 1157 1 species 1180 species 1 0 300231 Glaciecola nitratireducens 35 49507 family 25 267888 0 1 Pseudoalteromonadaceae Pseudoalteromonas 53246 0 1 49472 24 genus 650 1 species 1001 0 176102 Pseudoalteromonas agarivorans 43658 0 721 species 1 Pseudoalteromonas rubra Pseudoalteromonas spongiae 20428 1 species 0 298657 Pseudoalteromonas arctica 1323 1 species 0 394751 Pseudoalteromonas haloplanktis 1 species 1037 0 228 1046 species 1 28107 0 Pseudoalteromonas espejiana Pseudoalteromonas issachenkonii 1 species 1069 0 152297 Pseudoalteromonas piscicida 0 43662 1 species 893 0 43659 992 1 species Pseudoalteromonas tetraodonis 267375 0 1 species 954 Pseudoalteromonas marina species 1 1522 0 161398 Pseudoalteromonas phenolica Pseudoalteromonas translucida 0 166935 1 species 1044 7294 5 no rank 194690 0 0 283699 1 species 1315 Pseudoalteromonas sp. Bsw20308 Pseudoalteromonas sp. 13-15 1 species 1201 0 1761891 species 1 1315 0 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv Pseudoalteromonas sp. SM9913 1104 species 1 0 234831 Pseudoalteromonas sp. NC201 2359 1 species 1514074 0 1 species 1607 0 314281 Pseudoalteromonas tunicata species 1 2354 0 1348114 Pseudoalteromonas piratica 1101 species 1 0 28109 Pseudoalteromonas nigrifaciens Pseudoalteromonas atlantica 0 288 1865 1 species Pseudoalteromonas luteoviolacea 1264 species 1 0 43657 0 247523 1307 species 1 Pseudoalteromonas aliena 0 1 267894 7 3056 family 4 Psychromonadaceae 3 genus 3049 11 67572 0 1 Psychromonas Psychromonas ingrahamii 0 357794 1 species 1526 no rank 1 1512 0 2614957 0 314282 1512 species 1 Psychromonas sp. CNPT3 order 6 1637 12 0 1 1692040 Acidiferrobacterales 1625 5 family 24 0 1 1692041 Acidiferrobacteraceae Sulfurifustis 1692042 0 1 1001 2 genus 14 987 1 species 0 1675686 Sulfurifustis variabilis 2 genus 600 15 1 0 1744881 Sulfuricaulis Sulfuricaulis limicola 1 species 585 0 1620215 Immundisolibacterales 12 4 order 848 0 1934945 1 3 family 836 11 0 1 1934946 Immundisolibacteraceae 825 genus 2 11 0 1934947 1 Immundisolibacter 0 1810504 814 species 1 Immundisolibacter cernigliae 0 1 72274 119789 order 129 349 Pseudomonadales 408 family 86 70809 0 1 135621 Pseudomonadaceae 1 0 286 67653 genus 80 1964 Pseudomonas 136843 0 10574 9 species group 1 species 1140 0 47878 Pseudomonas azotoformans 332 1 species 0 76758 Pseudomonas orientalis Pseudomonas corrugata 357 species 1 47879 0 0 200450 1 species 557 Pseudomonas trivialis 0 380021 1 species 640 Pseudomonas protegens Pseudomonas mandelii 0 75612 species 1 403 Pseudomonas poae 337 1 species 0 200451 1 species 355 0 76761 Pseudomonas veronii Pseudomonas fluorescens 0 294 1 species 6453 198620 0 791 species 1 Pseudomonas koreensis 1 species 455 0 1788301 Pseudomonas versuta species 1 934 0 157782 Pseudomonas parafulva Pseudomonas alkylphenolica 0 237609 397 species 1 1 species 378 312306 0 Pseudomonas entomophila species group 6 8746 0 136841 Pseudomonas resinovorans 0 53412 1 species 624 1962 1 species 300 0 Pseudomonas mendocina Pseudomonas citronellolis 1052 1 species 53408 0 1232139 0 species subgroup 1 824 0 1149133 1 species 824 Pseudomonas furukawaii 1 species 610 0 43263 Pseudomonas alcaligenes 0 287 1 species 3674 Pseudomonas aeruginosa Pseudomonas brassicacearum 826 species 1 0 930166 6 species group 9724 0 136845 1070 1 species 78327 0 Pseudomonas mosselii 0 47880 753 species 1 Pseudomonas fulva 0 76759 1 species 1409 Pseudomonas monteilii 1 species 404 0 70775 Pseudomonas plecoglossicida 1 species 5514 0 303 Pseudomonas putida Pseudomonas oryzihabitans 1 species 574 0 47885 Pseudomonas knackmussii 0 65741 570 1 species 2 species group 3200 136842 0 Pseudomonas fragi 0 296 761 species 1 0 587753 2439 species 1 Pseudomonas chlororaphis 4298 2 species group 136846 0 species 1 621 0 74829 Pseudomonas balearica 0 578833 3677 1 species subgroup 316 0 1 species 3677 Pseudomonas stutzeri 13569 30 no rank 196821 0 Pseudomonas sp. S-6-2 1931241 0 630 1 species Pseudomonas sp. FDAARGOS_380 288 species 1 0 2018067 0 2083053 species 1 359 Pseudomonas sp. SWI44 1 species 273 0 1827300 Pseudomonas sp. MYb193 Pseudomonas sp. JY-Q 353 species 1 0 1338689 Pseudomonas sp. FGI182 0 1259844 340 1 species species 1 365 0 1207075 Pseudomonas sp. UW4 0 2069256 407 species 1 Pseudomonas sp. XWY-1 2049589 0 395 1 species Pseudomonas sp. HLS-6 Pseudomonas sp. SWI6 0 2083051 381 species 1 485 1 species 0 1028989 Pseudomonas sp. StFLB209 0 1500686 428 1 species Pseudomonas sp. Os17 Pseudomonas sp. GR 6-02 426 1 species 0 1659194 0 1649877 406 species 1 Pseudomonas sp. CCOS 191 0 1636610 species 1 433 Pseudomonas sp. PONIH3 363 1 species 0 2083055 Pseudomonas sp. LH1G9 0 1283291 796 1 species Pseudomonas sp. URMO17WK12:I11 Pseudomonas sp. MRSN12121 470 1 species 0 1611770 0 69328 340 1 species Pseudomonas sp. VLB120 Pseudomonas sp. CC6-YY-74 846 1 species 1930532 0 Pseudomonas sp. LPH1 0 1898684 598 1 species 0 1415630 1 species 679 Pseudomonas sp. TKP 398 species 1 2083052 0 Pseudomonas sp. SWI36 Pseudomonas sp. M30-35 506 species 1 0 1981174 Pseudomonas sp. ATCC 13867 543 1 species 0 1294143 Pseudomonas sp. St29 1 species 366 0 1500687 Pseudomonas sp. NC02 0 2067572 species 1 448 Pseudomonas sp. LG1D9 330 1 species 0 2083054 334 species 1 1534110 0 Pseudomonas sp. DR 5-09 Pseudomonas sp. TCU-HL1 583 1 species 0 1856685 Pseudomonas frederiksbergensis 1139 1 species 104087 0 Pseudomonas cremoricolorata 389 1 species 0 157783 1 species 525 0 101564 Pseudomonas alcaliphila Pseudomonas rhizosphaerae 0 216142 415 1 species Pseudomonas silesiensis 0 1853130 species 1 676 Pseudomonas psychrotolerans 1 species 585 0 237610 1 species 343 0 244566 Pseudomonas lurida Pseudomonas cerasi 471 1 species 1583341 0 Pseudomonas antarctica 219572 0 species 1 330 8 species group 6354 0 136849 372 no rank 1 0 2775504 species 1 372 1206777 0 Pseudomonas sp. Lz4W 1124 species subgroup 2 0 251698 Pseudomonas amygdali 0 47877 species 1 531 Pseudomonas savastanoi species 1 593 29438 0 0 251701 864 species 1 Pseudomonas syringae group genomosp. 3 354 1 species 0 36746 Pseudomonas cichorii 0 33069 1 species 346 Pseudomonas viridiflava 0 46257 327 1 species Pseudomonas avellanae 2967 1 species subgroup 251695 0 Pseudomonas syringae species 1 2967 0 317 351 0 1862 subfamily 3 Azotobacter 19 1862 genus 3 0 352 1 1124 1 species 0 353 Azotobacter chroococcum Azotobacter vinelandii 719 1 species 0 354 Oblitimonas 886 2 genus 6 0 1 1849530 0 1697053 1 species 880 Oblitimonas alkaliphila 0 1 468 125 48631 family 42 Moraxellaceae 1 0 469 415 36445 25 genus Acinetobacter 0 487316 1 species 895 Acinetobacter soli 1 species 1356 0 29430 Acinetobacter haemolyticus Acinetobacter larvae 808 species 1 0 1789224 40216 0 884 1 species Acinetobacter radioresistens 0 40214 1 species 824 Acinetobacter johnsonii species 1 1463 106648 0 Acinetobacter bereziniae 0 196816 no rank 7 6595 Acinetobacter sp. NCu2D-2 1608473 0 817 1 species 1 species 1014 0 1758189 Acinetobacter sp. ACNIH2 Acinetobacter sp. TTH0-4 species 1 1128 1646498 0 Acinetobacter sp. ACNIH1 0 1636603 species 1 998 Acinetobacter sp. LoGeW2-3 730 species 1 0 1808001 Acinetobacter sp. TGL-Y2 1407071 0 967 1 species Acinetobacter sp. SWBY1 0 2079596 941 species 1 1214 1 species 0 1148157 Acinetobacter oleivorans Acinetobacter schindleri 1 species 891 0 108981 Acinetobacter junii 1577 species 1 40215 0 511 species 1 0 756892 Acinetobacter indicus 909768 0 15886 species group 5 Acinetobacter calcoaceticus species 1 2418 0 471 Acinetobacter lactucae 0 1785128 1 species 1169 Acinetobacter baumannii 0 470 1 species 5397 0 48296 species 1 5122 Acinetobacter pittii 1780 species 1 0 106654 Acinetobacter nosocomialis Acinetobacter equi 2068 1 species 0 1324350 0 202950 1 species 1058 strain 1 1058 0 62977 Acinetobacter sp. ADP1 0 1 497 11 genus 7934 214 Psychrobacter 818 1 species 0 45610 Psychrobacter urativorans Psychrobacter alimentarius 976 species 1 261164 0 Psychrobacter arcticus 1 species 753 334543 0 0 330922 species 1 728 Psychrobacter cryohalolentis 4445 6 no rank 196806 0 816 species 1 0 349106 Psychrobacter sp. PRwf-1 Psychrobacter sp. P11G5 1 species 735 1699624 0 0 571800 species 1 672 Psychrobacter sp. G species 1 801 0 1699622 Psychrobacter sp. P2G3 659 1 species 0 1720344 Psychrobacter sp. AntiMn-1 Psychrobacter sp. DAB_AL43B 0 1028416 species 1 762 0 475 1 4127 5 genus 49 Moraxella 29433 0 species 1 536 Moraxella ovis Moraxella bovoculi 0 386891 1 species 942 Moraxella osloensis 0 34062 1 species 1505 0 480 1095 1 species Moraxella catarrhalis Xanthomonadales 240 54 order 40728 0 1 135614 Xanthomonadaceae 328 39 family 35920 0 32033 1 1 0 40323 184 9 genus 9023 Stenotrophomonas Stenotrophomonas nitritireducens 591 1 species 83617 0 995085 0 1 species group 4284 0 40324 species 1 4284 Stenotrophomonas maltophilia no rank 4 2472 196198 0 1 species 639 0 1793721 Stenotrophomonas sp. KCTC 12332 Stenotrophomonas sp. LM091 species 1 434 0 1904944 0 2005046 647 1 species Stenotrophomonas sp. WZN-1 Stenotrophomonas sp. MYb57 0 1827305 752 1 species 0 128780 species 1 1033 Stenotrophomonas acidaminiphila Stenotrophomonas rhizophila 0 216778 459 species 1 21 1614 3 genus 0 1 83618 Pseudoxanthomonas 0 314722 species 1 1149 Pseudoxanthomonas suwonensis 0 415229 species 1 444 Pseudoxanthomonas spadix Xylella 0 2370 1 1 genus 2 2016 0 2371 2015 1 species Xylella fastidiosa 1 0 68 35 5202 genus 5 Lysobacter 0 262324 917 species 1 Lysobacter gummosus Lysobacter capsici 1575 species 1 0 435897 Lysobacter antibioticus 0 84531 species 1 1826 Lysobacter enzymogenes 0 69 849 species 1 Xanthomonas 17283 genus 17 464 0 338 1 355 species 1 0 53413 Xanthomonas axonopodis species 1 544 0 56454 Xanthomonas hortorum Xanthomonas phaseoli 0 1985254 species 1 418 4292 species group 2 643453 0 Xanthomonas citri 3160 1 species 346 0 1 species 1132 0 366648 Xanthomonas fuscans 0 442694 species 1 415 Xanthomonas perforans 0 456327 517 species 1 Xanthomonas euvesicatoria Xanthomonas fragariae 48664 0 species 1 752 0 56459 358 1 species Xanthomonas vasicola 747 1 species 0 56458 Xanthomonas sacchari Xanthomonas oryzae 3073 species 1 0 347 343 0 1266 species 1 Xanthomonas translucens 0 339 1 species 2588 Xanthomonas campestris Xanthomonas albilineans 29447 0 species 1 428 56460 0 1 species 649 Xanthomonas vesicatoria 1 species 417 0 366650 Xanthomonas alfalfae Luteimonas 0 1 83614 8 454 2 genus Luteimonas sp. 100111 446 1 species 0 2006110 48 4568 14 family 0 1 1775411 Rhodanobacteraceae Dyella 0 231454 1 1500 genus 4 65 Dyella thiooxydans 498 1 species 445710 0 Dyella jiangningensis 409 species 1 0 1379159 Dyella japonica 528 species 1 231455 0 Dokdonella 1 0 323413 12 2 genus 860 Dokdonella koreensis 0 323415 848 species 1 2233801 0 470 genus 1 2021234 0 1 species 470 Xanthomonadales bacterium D13 Frateuria 11 genus 2 475 0 1 70411 species 1 464 81475 0 Frateuria aurantia Rhodanobacter 713 2 genus 10 0 75309 1 1 species 703 0 666685 Rhodanobacter denitrificans Luteibacter 7 2 genus 502 242605 0 1 242606 0 495 species 1 Luteibacter rhizovicinus Enterobacterales 0 1 91347 158927 order 250 475 Enterobacteriaceae 540 121 family 68583 0 543 1 Candidatus Riesia 2 genus 1198 6 0 401618 1 1 species 1192 0 401619 Candidatus Riesia pediculicola genus 3 978 5 0 1330546 1 Pluralibacter [Enterobacter] lignolyticus 0 1334193 1 species 402 61647 0 1 species 571 Pluralibacter gergoviae 0 579 325 1 genus Kluyvera intermedia 0 61648 325 species 1 1 0 570 236 10 genus 10614 Klebsiella 1421 species 1 0 571 Klebsiella oxytoca 0 1134687 1 species 860 Klebsiella michiganensis 0 548 1852 species 1 Klebsiella aerogenes 441 1 species 0 1463165 Klebsiella quasipneumoniae 1 species 4199 573 0 Klebsiella pneumoniae Klebsiella quasivariicola 0 2026240 species 1 325 species 1 697 0 244366 Klebsiella variicola 2 no rank 583 2608929 0 0 1905288 1 species 299 Klebsiella sp. LTGPAF-6F 0 1934254 species 1 284 Klebsiella sp. M5al 158483 0 1 8 890 2 genus Cedecea 158822 0 1 species 882 Cedecea neteri Leclercia 33 4 genus 889 1 0 83654 0 83655 1 species 296 Leclercia adecarboxylata 560 no rank 2 2627398 0 Leclercia sp. LSNIH1 280 species 1 1920114 0 0 1920116 280 1 species Leclercia sp. LSNIH3 547 0 1 genus 22 7437 319 Enterobacter 5289 12 species group 0 354276 Enterobacter asburiae 1 species 634 61645 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 species 138 0 1812935 Enterobacter cancerogenus 69218 0 232 1 species Enterobacter hormaechei 0 158836 1 782 1140 3 species 1 subspecies 145 0 1296536 Enterobacter xiangfangensis 213 subspecies 1 0 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' no rank 3 557 2757714 0 Enterobacter cloacae complex sp. ECNIH7 152 1 species 0 1915310 180 species 1 0 2027919 Enterobacter cloacae complex bacterium Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 2077137 225 1 species 0 550 2241 species 1 Enterobacter cloacae Enterobacter kobei 1 species 120 208224 0 Enterobacter ludwigii 0 299767 227 species 1 1829 9 no rank 0 2608935 0 1560339 1 species 133 Enterobacter sp. E20 Enterobacter sp. HK169 1 species 120 0 1868135 1 species 229 1692238 0 Enterobacter sp. FY-07 275 1 species 0 399742 Enterobacter sp. 638 0 1166130 species 1 308 Enterobacter sp. R4-368 Enterobacter sp. Crenshaw 175 1 species 0 1977566 1827481 0 species 1 131 Enterobacter sp. ODB01 Enterobacter sp. CRENT-193 195 1 species 0 2051905 0 1914861 263 1 species Enterobacter sp. SA187 genus 1 266 0 1048757 Candidatus Moranella endobia 0 1048758 1 species 266 Candidatus Ishikawaella 12 1550 genus 2 409304 0 1 Candidatus Ishikawaella capsulata 1538 1 species 168169 0 413496 0 1 68 8 genus 2150 Cronobacter 0 28141 species 1 459 Cronobacter sakazakii Cronobacter universalis 237 species 1 535744 0 Cronobacter dublinensis 413497 0 1 species 280 species 1 316 0 1163710 Cronobacter condimenti Cronobacter malonaticus species 1 219 0 413503 413502 0 276 species 1 Cronobacter turicensis 295 species 1 0 413501 Cronobacter muytjensii Escherichia 8708 genus 5 36 0 1 561 Escherichia marmotae 0 1499973 290 1 species 0 564 190 species 1 Escherichia fergusonii Escherichia albertii 208962 0 1 species 618 Escherichia coli 0 562 1 species 7574 1335483 0 genus 1 253 253 1 species 563 0 Shimwellia blattae 1171 genus 3 6 160674 0 1 Raoultella Raoultella ornithinolytica 1 species 820 54291 0 Raoultella planticola 0 575 1 species 345 Shigella 0 620 1 541 4 genus 33 0 622 246 1 species Shigella dysenteriae 0 623 143 1 species Shigella flexneri 119 1 no rank 0 2629414 Shigella sp. PAMC 28760 0 1813821 119 1 species 0 1330547 1 1455 5 genus 30 Kosakonia Kosakonia cowanii 0 208223 271 species 1 Kosakonia radicincitans 0 283686 429 1 species 340 1 species 0 497725 Kosakonia oryzae Kosakonia sacchari 0 1158459 385 1 species 36866 0 2298 5 no rank Enterobacteriaceae bacterium ENNIH1 1 species 280 0 2066051 Enterobacteriaceae bacterium ENNIH2 0 1920109 298 species 1 0 693444 311 species 1 Enterobacteriaceae bacterium strain FGI 57 Enterobacteriaceae bacterium ENNIH3 0 1920128 304 1 species Plautia stali symbiont 0 891974 1105 species 1 Salmonella 14 3 genus 6408 1 0 590 Salmonella enterica 0 28901 5924 1 species Salmonella bongori 0 54736 1 species 470 Lelliottia 15 genus 4 1071 0 1 1330545 1 species 238 0 1907578 Lelliottia jeotgali Lelliottia nimipressuralis species 1 221 0 69220 Lelliottia amnigena 1 species 597 0 61646 no rank 21 13715 0 191675 0 84563 clade 21 13715 Candidatus Doolittlea 5 237 genus 2 0 1 1906657 Candidatus Doolittlea endobia 0 1778262 1 species 232 84564 0 7 clade 7084 203804 0 1 49 genus 7 7084 Candidatus Blochmannia Candidatus Blochmannia chromaiodes 0 251542 960 1 species 711328 0 no rank 2 2434 1106 1 species 0 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1505597 species 1 1328 1423 1 species 251535 0 Candidatus Blochmannia vafer 203907 0 species 1 1277 Candidatus Blochmannia floridanus 0 101534 941 1 species Candidatus Blochmannia pennsylvanicus Candidatus Tachikawaea 5 2 genus 1953 1 0 1682492 Candidatus Tachikawaea gelatinosa 1948 1 species 1410383 0 1906659 0 286 1 genus Candidatus Hoaglandella endobia 0 1778263 286 1 species 0 1906661 1 720 genus 2 13 Candidatus Gullanella 707 species 1 0 1070130 Candidatus Gullanella endobia clade 4 1804 146507 0 species 1 306 0 1199245 secondary endosymbiont of Ctenarytaina eucalypti 728 species 1 0 134287 secondary endosymbiont of Heteropsylla cubana Candidatus Hamiltonella 568987 0 1 2 genus 770 10 Candidatus Hamiltonella defensa 0 138072 1 species 760 1 clade 721 199891 0 0 1835721 1 species 721 secondary endosymbiont of Trabutina mannipara 910 genus 2 2 1 0 1906660 Candidatus Mikella 908 species 1 0 1778264 Candidatus Mikella endobia Citrobacter 161 14 genus 6126 544 0 1 572 1 species 0 67824 Citrobacter farmeri 0 1344959 3429 species group 7 523 species 1 67827 0 Citrobacter werkmanii Citrobacter freundii 0 546 species 1 1442 Citrobacter freundii complex sp. CFNIH2 253 species 1 0 2066049 241 1 species 0 2077149 Citrobacter freundii complex sp. CFNIH9 0 2077147 1 species 267 Citrobacter freundii complex sp. CFNIH3 0 2077148 1 species 212 Citrobacter freundii complex sp. CFNIH4 Citrobacter braakii species 1 491 0 57706 Citrobacter rodentium 67825 0 301 species 1 409 species 1 0 545 Citrobacter koseri Citrobacter amalonaticus 0 35703 707 1 species 547 2 no rank 0 2644389 Citrobacter sp. FDAARGOS_156 1 species 257 0 1702170 Citrobacter sp. CFNIH10 1 species 290 0 1920110 653 no rank 2 451511 0 Plesiomonas 24 653 2 genus 702 0 1 629 species 1 0 703 Plesiomonas shigelloides 1 0 1903411 85 22211 family 39 Yersiniaceae 1 genus 2 1565532 0 Rouxiella 1 0 629 13 genus 11196 128 Yersinia 0 29484 species 1 1441 Yersinia frederiksenii 526 species 1 0 29483 Yersinia aldovae Yersinia enterocolitica 0 630 1 species 2035 Yersinia intermedia 1 species 509 631 0 Yersinia ruckeri 0 29486 597 species 1 0 28152 533 1 species Yersinia kristensenii Yersinia rohdei species 1 546 0 29485 1649845 0 species group 3 4060 Yersinia pestis 1682 1 species 0 632 1284 species 1 0 367190 Yersinia similis Yersinia pseudotuberculosis 1 species 1094 0 633 Yersinia aleksiciae 0 263819 species 1 358 0 2653513 no rank 1 463 463 species 1 0 1839800 Yersinia sp. FDAARGOS_228 Gibbsiella 0 929812 1 6 genus 2 428 422 species 1 929813 0 Gibbsiella quercinecans 297 16 genus 8931 0 613 1 Serratia Serratia plymuthica 1 species 726 82996 0 Serratia liquefaciens 1 species 521 0 614 0 28151 species 1 305 Serratia proteamaculans Serratia fonticola 0 47917 1 species 937 0 615 species 1 2532 Serratia marcescens 2647522 0 2861 8 no rank Serratia sp. FGI94 0 671990 species 1 322 0 2033438 species 1 325 Serratia sp. MYb239 366 species 1 1758196 0 Serratia sp. SSNIH1 768490 0 231 1 species Serratia sp. AS12 550 species 1 0 488142 Serratia sp. SCBI Serratia sp. FS14 0 1327989 404 1 species 768493 0 231 species 1 Serratia sp. AS13 Serratia sp. ATCC 39006 species 1 432 104623 0 Serratia ficaria 1 species 385 61651 0 Serratia rubidaea 61652 0 1 species 367 341 genus 2 3 0 1745211 1 Chania 1 species 338 1639108 0 Chania multitudinisentens 0 34037 1 4 genus 1228 23 Rahnella 2635087 0 869 no rank 2 0 741091 1 species 350 Rahnella sp. Y9602 0 1805933 species 1 519 Rouxiella sp. ERMR1:05 336 1 species 0 34038 Rahnella aquatilis Hafniaceae 1903412 0 1 27 14 family 10407 Obesumbacterium 1 0 82982 2 genus 446 21 Obesumbacterium proteus 82983 0 1 species 425 Edwardsiella 0 1 635 111 genus 8 8357 392 species 1 0 67780 Edwardsiella ictaluri 1821960 0 species 1 464 Edwardsiella anguillarum 2676541 0 857 2 no rank Edwardsiella sp. EA181011 480 1 species 1578828 0 1 species 377 0 1650654 Edwardsiella sp. LADL05-105 Edwardsiella hoshinae 273 1 species 93378 0 Edwardsiella tarda 0 636 species 1 5884 0 1263550 1 species 376 Edwardsiella piscicida Hafnia genus 3 1577 42 0 568 1 1 species 1159 0 569 Hafnia alvei 2621980 0 376 1 no rank 0 1848580 species 1 376 Hafnia sp. CBA7124 20 family 8287 31 0 1 1903410 Pectobacteriaceae Brenneria 0 1 71655 13 540 2 genus Brenneria goodwinii 527 species 1 0 1109412 Sodalis 84565 0 1 5 genus 2004 102 Sodalis glossinidius 1 species 409 0 63612 Candidatus Sodalis pierantonius 0 1486991 462 1 species Sodalis endosymbiont of Henestaris halophilus 594 species 1 0 1929246 1239307 0 species 1 437 Sodalis praecaptivus Dickeya 1 0 204037 52 6 genus 2430 Dickeya fangzhongdai 302 1 species 0 1778540 species 1 352 0 204038 Dickeya dadantii 598 1 species 0 1089444 Dickeya solani Dickeya zeae 204042 0 1 species 829 Dickeya dianthicola 297 1 species 204039 0 Pectobacterium 3282 genus 6 89 122277 0 1 Pectobacterium carotovorum 1259 species 1 554 0 400 1 species 55208 0 Pectobacterium wasabiae species 1 769 0 1905730 Pectobacterium parmentieri 1 species 326 2042057 0 Pectobacterium polaris Pectobacterium atrosepticum 439 species 1 0 29471 56 22 family 15217 1 0 1903414 Morganellaceae 9 628 genus 2 0 581 1 Morganella Morganella morganii species 1 619 0 582 0 1 637 genus 2 1869 9 Arsenophonus Arsenophonus symbiont of Lipoptena fortisetosa species 1 1860 0 634113 626 0 1 39 3214 6 genus Xenorhabdus Xenorhabdus bovienii 925 species 1 0 40576 Xenorhabdus poinarii 0 40577 526 1 species 596 species 1 0 351679 Xenorhabdus hominickii 587 1 species 628 0 Xenorhabdus nematophila Xenorhabdus doucetiae 541 species 1 0 351671 Photorhabdus genus 4 2502 19 1 0 29487 Photorhabdus asymbiotica 1 species 966 0 291112 29488 0 782 1 species Photorhabdus luminescens 574560 0 species 1 735 Photorhabdus temperata 8 3022 4 genus 1 0 586 Providencia 126385 0 687 species 1 Providencia alcalifaciens Providencia stuartii 1232 1 species 0 588 Providencia rettgeri species 1 1095 587 0 3 genus 3926 12 0 1 583 Proteus Proteus mirabilis 0 584 2502 1 species Proteus vulgaris species 1 1412 0 585 family 28 32617 70 1 0 1903409 Erwiniaceae 2 genus 705 0 2100764 Pantoea gaviniae species 1 315 0 665914 1 species 390 665913 0 Pantoea calida Erwinia 0 551 1 56 8 genus 2881 1922217 0 663 species 1 Candidatus Erwinia sp. ErCipseudotaxifoliae species 1 305 79967 0 Erwinia pyrifoliae 2622719 0 293 1 no rank Erwinia sp. Ejp617 0 215689 1 species 293 Erwinia billingiae 0 182337 species 1 614 Erwinia tasmaniensis 0 338565 species 1 267 0 1619313 species 1 339 Erwinia gerundensis Erwinia amylovora species 1 344 552 0 Tatumella 82986 0 1 genus 2 404 10 0 53336 1 species 394 Tatumella citrea 19106 2 genus 34 1 0 32199 Buchnera 0 9 19072 species 1 Buchnera aphidicola Pantoea 176 5624 11 genus 53335 0 1 Pantoea rwandensis 0 1076550 316 1 species 3 no rank 1099 2630326 0 Pantoea sp. At-9b 416 species 1 0 592316 340 species 1 0 1484157 Pantoea sp. PSNIH2 Pantoea sp. PSNIH1 0 1484158 species 1 343 374 species 1 0 1891675 Pantoea alhagi Pantoea vagans 0 470934 804 1 species 1 species group 634 1654067 0 634 1 species 0 549 Pantoea agglomerans 341 1 species 0 66269 Pantoea stewartii Pantoea ananatis 0 553 596 1 species Candidatus Pantoea carbekii 1284 species 1 0 1235990 Wigglesworthia 64 3827 2 genus 0 51228 1 Wigglesworthia glossinidia 0 51229 species 1 3763 Budviciaceae 16 3 family 477 0 1 1903416 0 82984 1 2 genus 461 12 Pragia Pragia fontium 449 species 1 0 82985 54 16948 order 30 1706369 0 1 Cellvibrionales 1706375 0 1 7 family 3620 59 Spongiibacteraceae Zhongshania 12 1043 genus 2 1 0 1434050 Zhongshania aliphaticivorans 0 1470434 species 1 1031 Oceanicoccus 0 1 1084558 2 genus 1465 4 Oceanicoccus sagamiensis 0 716816 1461 1 species 1 0 630749 6 genus 2 1053 Spongiibacter 1 no rank 1047 0 2631504 Spongiibacter sp. IMCC21906 species 1 1047 0 1620392 8 4 family 2910 1706372 0 1 Halieaceae Halioglobus 0 1 1217416 2902 genus 3 52 Halioglobus pacificus 0 930806 1 species 1527 species 1 1323 0 930805 Halioglobus japonicus 0 1706371 1 family 13 7283 59 Cellvibrionaceae 0 1 2036021 1831 genus 2 1 Agarilytica Agarilytica rhodophyticola 0 1737490 species 1 1830 Simiduia 447467 0 1 6 genus 2 788 0 447471 782 1 species Simiduia agarivorans Teredinibacter 2425 0 1 10 genus 2 1009 999 species 1 0 2426 Teredinibacter turnerae 1145 2 genus 4 0 316625 1 Saccharophagus 1 species 1141 86304 0 Saccharophagus degradans Cellvibrio genus 4 2451 18 0 10 1 0 155077 1 species 699 Cellvibrio japonicus 0 2624793 2 no rank 1734 823 1 species 0 1945512 Cellvibrio sp. PSBB023 Cellvibrio sp. PSBB006 0 1987723 911 1 species 3081 5 family 17 1 0 1706373 Microbulbiferaceae 0 48073 1 4 genus 3064 50 Microbulbifer 1049 species 1 0 1769779 Microbulbifer aggregans 260552 0 species 1 947 Microbulbifer agarilyticus 252514 0 1018 1 species Microbulbifer thermotolerans Thiotrichales 1 0 72273 38 52597 order 36 Piscirickettsiaceae 58 family 15 13671 0 1 135616 0 28884 1 2 747 genus 2 Hydrogenovibrio Hydrogenovibrio crunogenus 0 39765 1 species 745 1336 3 genus 16 1 0 933 Thiomicrospira 1 species 652 0 147268 Thiomicrospira cyclica 668 species 1 0 92245 Thiomicrospira aerophila Cycloclasticus 34067 0 1 73 7551 4 genus 2117 1 species 0 1329899 Cycloclasticus zancles 2 no rank 5361 2621467 0 Cycloclasticus sp. P1 0 385025 1 species 2595 0 728003 2766 1 species Cycloclasticus sp. PY97N 1 0 40222 46 3 genus 2189 Methylophaga 1018 1 species 0 754477 Methylophaga frappieri Methylophaga nitratireducenticrescens 1125 species 1 754476 0 14 1790 genus 2 1237 0 1 Piscirickettsia Piscirickettsia salmonis 0 1238 1776 1 species Francisellaceae family 15 35502 38 1 0 34064 Allofrancisella 3 1996 genus 2 0 1869285 1 1993 1 species 594679 0 Allofrancisella guangzhouensis Francisella 0 262 1 33468 12 genus 352 954 0 1582 species 1 Francisella persica Francisella sp. TX077310 0 573570 2581 species 1 species 1 5757 263 0 Francisella tularensis Francisella hispaniensis species 1 1984 622488 0 3232 species 1 0 657445 Francisella noatunensis Francisella halioticida species 1 4898 0 549298 2 no rank 3905 0 2610885 0 475375 1 species 1699 Francisella sp. MA067296 1 species 2206 0 1547445 Francisella sp. FSC1006 Francisella sp. TX077308 1774 1 species 573569 0 0 1542390 2588 species 1 Francisella sp. CA97-1460 28110 0 1 species 4815 Francisella philomiragia 30 5 family 3386 135617 0 1 Thiotrichaceae 2 genus 1758 11 1021 0 1 Beggiatoa 0 288004 species 1 1747 Beggiatoa leptomitoformis Thioploca 17 1598 2 genus 0 40751 1 Thioploca ingrica 1581 species 1 0 40754 Nevskiales 0 1775403 1 18 4 order 532 Sinobacteraceae 0 568386 1 family 2 2689614 0 512 2 family 469322 0 1 34 512 genus 2 Steroidobacter 0 465721 1 species 478 Steroidobacter denitrificans Oceanospirillales 137 order 72 41432 135619 0 1 1 0 255527 7 5 family 1887 Saccharospirillaceae 830 2 genus 4 1 0 230494 Reinekea 826 species 1 1336806 0 Reinekea forsetii 8 2 genus 1050 1445504 0 1 Gynuella Gynuella sunshinyii 0 1445505 1042 species 1 Hahellaceae 0 224379 1 969 family 3 4 0 1 158481 965 2 genus 16 Hahella 0 158327 949 species 1 Hahella chejuensis Oleiphilaceae 1223 family 3 38 0 191033 1 2 genus 1185 13 1 0 141450 Oleiphilus Oleiphilus messinensis species 1 1172 141451 0 Oceanospirillaceae 48 8420 family 13 1 0 135620 0 1 1537406 969 genus 2 14 Bacterioplanes Bacterioplanes sanyensis 1 species 955 1249553 0 Oleispira 0 188907 1 1114 genus 2 8 Oleispira antarctica 0 188908 species 1 1106 1 0 187492 1406 genus 2 8 Thalassolituus 0 187493 species 1 1398 Thalassolituus oleivorans Marinobacterium 11 1051 2 genus 48075 0 1 1040 species 1 0 1821621 Marinobacterium aestuarii 0 1 28253 4 genus 3832 11 Marinomonas Marinomonas mediterranea 1 species 1140 0 119864 Marinomonas posidonica 0 936476 1046 species 1 0 196814 no rank 1 1635 0 400668 1635 1 species Marinomonas sp. MWYL1 family 6 3646 20 0 1920240 1 Kangiellaceae Kangiella 81 genus 5 3626 0 1 261963 1002 1 species 0 1561924 Kangiella profundi 914150 0 735 1 species Kangiella geojedonensis 879 1 species 0 1144748 Kangiella sediminilitoris 0 261964 1 species 929 Kangiella koreensis Halomonadaceae 0 1 28256 family 32 16220 157 1 0 404432 11 782 genus 2 Salinicola Salinicola tamaricis 771 species 1 0 1771309 no rank 5 3128 0 114403 Candidatus Portiera 0 235572 1 10 1304 genus 2 1 species 1294 0 91844 Candidatus Portiera aleyrodidarum genus 1 648 114185 0 0 114186 648 species 1 Candidatus Carsonella ruddii Candidatus Evansia 4 2 genus 1176 0 1 1495768 Candidatus Evansia muelleri 0 1495769 1172 1 species Kushneria 1 0 504090 16 genus 3 1198 Kushneria konosiri species 1 633 0 698828 Kushneria marisflavi 0 157779 1 species 549 0 1 2745 185 genus 15 8880 Halomonas Halomonas hydrothermalis 0 115561 1 species 522 Halomonas campaniensis species 1 511 0 213554 Halomonas chromatireducens 507626 0 1 species 587 no rank 8 4834 0 2609666 516 1 species 1962264 0 Halomonas sp. 'Soap Lake #7' 1610576 0 555 species 1 Halomonas sp. R57-5 Halomonas sp. SF2003 1 species 714 0 2136172 Halomonas sp. 1513 1883416 0 759 1 species Halomonas sp. 'Soap Lake #6' 1 species 517 0 1949203 Halomonas sp. GFAJ-1 0 1118153 species 1 477 Halomonas sp. KO116 1504981 0 653 species 1 Halomonas sp. GT 0 1971364 species 1 643 Halomonas aestuarii 0 1897729 1 species 704 645 species 1 0 1178482 Halomonas huangheensis 0 475662 892 species 1 Halomonas beimenensis Halotalea 0 1 376488 680 2 genus 6 0 376489 674 1 species Halotalea alkalilenta 10 genus 2 650 0 42054 1 Chromohalobacter 1 species 640 0 158080 Chromohalobacter salexigens genus 2 745 16 0 204286 1 Cobetia Cobetia marina 0 28258 species 1 729 Alcanivoracaceae 32 9 family 8930 1 0 224372 Ketobacter 1005 genus 2 28 0 1 2025617 1 species 977 0 1917421 Ketobacter alkanivorans Alcanivorax 59753 0 1 6 genus 7893 103 2356 1 no rank 0 2638842 Alcanivorax sp. NBRC 101098 0 1113728 2356 1 species Alcanivorax pacificus 1 species 1014 1306787 0 Alcanivorax borkumensis 59754 0 1 species 2483 Alcanivorax dieselolei species 1 979 0 285091 0 1094342 958 species 1 Alcanivorax xenomutans Methylococcales 16 5161 13 order 0 1 135618 Methylococcaceae 0 1 403 5145 12 family 42 Methylomonas 3066 5 genus 106 0 1 416 Methylomonas denitrificans 1 species 1067 1538553 0 603 1 species 0 702114 Methylomonas koyamae 679 1 no rank 2608980 0 Methylomonas sp. DH-1 679 species 1 0 1727196 0 421 species 1 611 Methylomonas methanica 487 genus 2 7 762296 0 1 Methylovulum species 1 480 0 1704499 Methylovulum psychrotolerans 413 0 1 genus 2 484 5 Methylococcus 479 1 species 0 414 Methylococcus capsulatus 8 1066 genus 2 0 39773 1 Methylomicrobium Methylomicrobium alcaliphilum 271065 0 1 species 1058 135613 0 1 order 52 20770 160 Chromatiales Woeseiaceae 865 family 3 8 1738654 0 1 1738655 0 1 857 2 genus 30 Woeseia Woeseia oceani 0 1548547 species 1 827 no rank 2 773 0 451214 21 773 2 genus 0 1 1273155 Thiohalobacter Thiohalobacter thiocyanaticus 0 585455 752 1 species Wenzhouxiangellaceae 11 3 family 910 1 0 1676141 899 2 genus 29 1 0 1676142 Wenzhouxiangella Wenzhouxiangella marina species 1 870 0 1579979 Ectothiorhodospiraceae 0 1 72276 113 18 family 6658 Thioalkalivibrio 3190 6 genus 82 1 0 106633 Thioalkalivibrio paradoxus 554 1 species 0 108010 471 1 species 0 106634 Thioalkalivibrio versutus Thioalkalivibrio sulfidiphilus 0 1033854 1 species 889 2621013 0 594 1 no rank Thioalkalivibrio sp. K90mix 396595 0 594 1 species 600 1 species 0 186931 Thioalkalivibrio nitratireducens genus 2 614 15 0 1 133193 Alkalilimnicola Alkalilimnicola ehrlichii 599 1 species 0 351052 7 522 genus 2 1765964 0 1 Acidihalobacter 515 1 species 0 160660 Acidihalobacter prosperus 0 1335745 1 3 genus 985 31 Spiribacter 1335757 0 species 1 548 Spiribacter curvatus 406 species 1 0 1335746 Spiribacter salinus Halorhodospira 0 85108 1 8 2 genus 558 Halorhodospira halophila 0 1053 1 species 550 Ectothiorhodospira 8 genus 2 676 1 0 1051 0 2684909 668 1 no rank Ectothiorhodospira sp. BSL-9 1442136 0 species 1 668 Granulosicoccaceae 3 family 1203 13 0 449719 1 2 genus 1190 19 1 0 437504 Granulosicoccus 437505 0 1171 species 1 Granulosicoccus antarcticus Halothiobacillaceae 0 1 255526 family 4 880 3 1 0 109262 3 genus 877 45 Halothiobacillus 927 0 438 1 species Halothiobacillus neapolitanus 0 2636392 394 1 no rank Halothiobacillus sp. LS2 0 1860122 1 species 394 9321 family 18 74 0 1046 1 Chromatiaceae 0 82569 687 1 no rank Chromatiaceae bacterium 2141T.STBD.0c.01a 687 1 species 0 1978339 Allochromatium 601 2 genus 16 85072 0 1 1 species 585 0 1049 Allochromatium vinosum 1 0 53392 2039 2 genus 14 Thiodictyon 0 1166950 2025 1 species Candidatus Thiodictyon syntrophicum 17 2 genus 843 0 1 85076 Marichromatium Marichromatium purpuratum 0 37487 826 species 1 661 genus 2 12 0 1 13724 Thiocystis Thiocystis violascens species 1 649 73141 0 genus 2 1094 5 1 0 1980513 Candidatus Nitrosoglobus Candidatus Nitrosoglobus terrae species 1 1089 0 1630141 Nitrosococcus 2459 4 genus 41 0 1227 1 Nitrosococcus halophilus 531 species 1 133539 0 1 species 722 1229 0 Nitrosococcus oceani Nitrosococcus watsonii 0 473531 species 1 1165 Thioflavicoccus 11 863 2 genus 0 1 156885 Thioflavicoccus mobilis species 1 852 0 80679 Aeromonadales 29 order 12706 57 1 0 135624 Aeromonadaceae 142 family 28 12649 84642 0 1 Aeromonas 9695 18 genus 463 642 0 1 species 1 342 0 948519 Aeromonas rivipollensis species 1 232 0 648 Aeromonas caviae Aeromonas salmonicida 1153 species 1 0 645 Aeromonas aquatica species 1 428 0 558964 0 257493 2794 no rank 8 Aeromonas sp. ASNIH3 0 1636608 species 1 259 0 1758179 332 1 species Aeromonas sp. ASNIH5 species 1 447 2033032 0 Aeromonas sp. CA23 1636606 0 416 1 species Aeromonas sp. ASNIH1 Aeromonas sp. ASNIH2 1636607 0 1 species 282 Aeromonas sp. ASNIH4 1636609 0 488 1 species species 1 335 2033033 0 Aeromonas sp. CU5 Aeromonas sp. ASNIH7 1920107 0 235 species 1 Aeromonas media 0 651 316 1 species Aeromonas schubertii 652 0 366 1 species 644 0 species 1 2139 Aeromonas hydrophila 1046 species 1 654 0 Aeromonas veronii Aeromonas dhakensis 196024 0 1 species 416 Zobellella genus 2 703 20 347533 0 1 species 1 683 0 347534 Zobellella denitrificans Oceanimonas 8 527 genus 2 0 129577 1 0 2636315 519 1 no rank Oceanimonas sp. GK1 0 511062 519 species 1 Tolumonas 43947 0 1 414 2 genus 4 0 43948 410 species 1 Tolumonas auensis genus 3 1168 8 0 1 225143 Oceanisphaera 1416627 0 1 species 555 Oceanisphaera profunda Oceanisphaera sp. AMac2203 species 1 605 1903694 0 201 subphylum 147720 0 68525 0 29547 1 69 87549 72 class Epsilonproteobacteria Nautiliales 1 0 235899 1959 order 6 2 2795691 0 2 family 587 587 genus 2 6 269258 0 1 Nitratiruptor no rank 1 581 2624044 0 0 387092 581 1 species Nitratiruptor sp. SB155-2 2 3 family 1370 1 0 224467 Nautiliaceae Nautilia 0 1 191291 8 1368 2 genus Nautilia profundicola 1 species 1360 0 244787 Campylobacterales 0 213849 1 158 order 65 85521 Helicobacteraceae 13 14 family 10666 0 72293 1 0 843 254 1 genus Wolinella succinogenes 0 844 species 1 254 Helicobacter 12 genus 10399 38 0 209 1 Helicobacter bilis 1 species 761 0 37372 520 1 species 76936 0 Helicobacter typhlonius Helicobacter acinonychis 370 species 1 0 212 0 1591088 species 1 451 Helicobacter himalayensis 2593540 0 505 1 no rank Helicobacter sp. MIT 01-6242 species 1 505 0 222136 Helicobacter pylori 210 0 4447 1 species 213 0 636 1 species Helicobacter cinaedi Helicobacter felis 0 214 1 species 224 Helicobacter mustelae 0 217 1 species 401 Helicobacter cetorum 1196 species 1 0 138563 Helicobacter hepaticus 0 32025 850 species 1 0 2771471 2525 family 5 Sulfuricurvum 286130 0 1 3 271 genus 2 Sulfuricurvum kujiense 268 species 1 0 148813 2254 3 genus 10 202746 0 1 Sulfurimonas Sulfurimonas autotrophica 0 202747 995 1 species 39766 0 1 species 1249 Sulfurimonas denitrificans family 41 70908 138 72294 0 1 Campylobacteraceae Campylobacter 26 genus 45320 341 1 0 194 Campylobacter subantarcticus 0 497724 2001 species 1 2679 species 1 1965231 0 Campylobacter pinnipediorum 2593542 0 5733 no rank 4 0 1660074 species 1 1476 Campylobacter sp. RM8964 Campylobacter sp. RM16704 2046 1 species 0 1500960 0 1660076 1 species 1428 Campylobacter sp. RM12175 1660073 0 1 species 783 Campylobacter sp. RM6137 0 824 235 species 1 Campylobacter gracilis 2192 species 1 827 0 Campylobacter ureolyticus 0 28898 938 species 1 Campylobacter helveticus 1543 1 species 0 374106 Campylobacter cuniculorum 5295 1 species 201 0 Campylobacter lari species 1 1770 0 196 Campylobacter fetus Campylobacter concisus 1 species 1175 0 199 0 522485 species 1 1087 Campylobacter avium Campylobacter jejuni 3864 species 1 197 0 0 200 263 species 1 Campylobacter curvus Campylobacter peloridis 0 488546 1780 species 1 Campylobacter sputorum 206 0 3069 species 1 Campylobacter insulaenigrae species 1 2175 0 260714 Campylobacter volucris 0 1031542 1998 1 species Campylobacter hominis 1 species 1096 0 76517 Campylobacter hyointestinalis 0 198 1404 species 1 Campylobacter iguaniorum 1 species 996 0 1244531 2976 species 1 195 0 Campylobacter coli 0 75658 species 1 710 Campylobacter lanienae Sulfurospirillum 75 5494 genus 9 0 57665 1 Sulfurospirillum cavolei 386 species 1 0 366522 0 194424 1 species 507 Sulfurospirillum halorespirans 0 44674 636 species 1 Sulfurospirillum barnesii 0 66821 species 1 576 Sulfurospirillum multivorans 2583 no rank 3 2618290 0 1581011 0 1002 1 species Sulfurospirillum sp. UCH001 740 species 1 0 220622 Sulfurospirillum sp. JPD-1 Sulfurospirillum sp. SL2-1 0 1986224 1 species 841 731 species 1 0 65553 Sulfurospirillum deleyianum 19956 no rank 5 2321108 0 1 no rank 4758 0 2321207 944547 0 species 1 4758 Arcobacter sp. L 0 1 28196 3 genus 10333 115 Arcobacter 0 28197 6398 1 species Arcobacter butzleri 0 28199 species 1 3820 Arcobacter nitrofigilis genus 1 4865 2321187 0 0 1850254 4865 1 species Arcobacter sp. LPB0137 2771472 0 family 4 1264 340 genus 1 0 269260 Nitratifractor salsuginis 269261 0 1 species 340 Sulfurovum 265570 0 1 3 genus 924 42 206403 0 1 species 412 Sulfurovum lithotrophicum 470 no rank 1 2646778 0 Sulfurovum sp. NBC37-1 1 species 470 387093 0 class 129 60171 101 1 0 28221 Deltaproteobacteria 0 213113 1 2 2926 order 6 Desulfurellales Desulfurellaceae 0 1 117942 14 2924 5 family Desulfurella 2126 genus 2 4 0 1 33001 Desulfurella acetivorans 0 33002 species 1 2122 1 0 84404 genus 2 784 4 Hippea species 1 780 0 84405 Hippea maritima 0 213115 1 8651 order 26 71 Desulfovibrionales Desulfovibrionaceae 7432 family 18 63 1 0 194924 Desulfovibrio 1 0 872 34 3774 9 genus 235 no rank 1 2593640 0 Desulfovibrio sp. G11 235 1 species 0 631220 species 1 679 0 184917 Desulfovibrio magneticus Desulfovibrio vulgaris 0 881 species 1 1100 Desulfovibrio piger 0 901 1 species 257 Desulfovibrio fairfieldensis 1 species 245 0 44742 Desulfovibrio alaskensis 58180 0 1 species 396 0 1725232 148 species 1 Candidatus Desulfovibrio trichonymphae Desulfovibrio desulfuricans 0 876 species 1 680 Lawsonia genus 2 1560 6 1 0 41707 Lawsonia intracellularis 1554 1 species 29546 0 718 1 genus 0 2794998 Desulfovibrio salexigens 880 0 1 species 718 2582840 0 1 genus 322 Desulfovibrio africanus 873 0 species 1 322 995 4 genus 15 0 2035811 1 Pseudodesulfovibrio 0 1716143 species 1 380 Pseudodesulfovibrio indicus 182210 0 368 species 1 Pseudodesulfovibrio aespoeensis 232 species 1 0 57320 Pseudodesulfovibrio profundus 0 213116 1 family 4 814 4 Desulfomicrobiaceae 0 898 1 9 810 genus 3 Desulfomicrobium species 1 448 0 899 Desulfomicrobium baculatum Desulfomicrobium orale species 1 353 0 132132 1 3 family 334 1 0 213117 Desulfohalobiaceae Desulfohalobium 1 0 45662 3 333 genus 2 Desulfohalobium retbaense 45663 0 species 1 330 0 213118 1 62 order 20 7050 Desulfobacterales Desulfobacteraceae 27 4780 family 10 0 1 213119 Desulfobacula 0 28222 1 4 1613 2 genus 0 28223 1609 1 species Desulfobacula toluolica 18 2 genus 1522 0 218207 1 Desulfatibacillum Desulfatibacillum alkenivorans 0 259354 1504 1 species 3 genus 1084 12 1 0 896 Desulfococcus Desulfococcus multivorans 897 0 489 species 1 Desulfococcus oleovorans 1 species 583 0 181663 2295 0 1 10 2 genus 534 Desulfobacterium Desulfobacterium autotrophicum 2296 0 524 1 species 213121 0 1 33 2208 family 9 Desulfobulbaceae Desulfotalea 0 109168 1 genus 2 777 17 84980 0 1 species 760 Desulfotalea psychrophila 1 0 53318 6 707 genus 2 Desulfocapsa 1 species 701 65555 0 Desulfocapsa sulfexigens 893 0 1 11 369 genus 2 Desulfobulbus 0 1986146 1 species 358 Desulfobulbus sp. ORNL 0 1 427922 2 322 2 genus Desulfurivibrio 320 species 1 0 427923 Desulfurivibrio alkaliphilus Syntrophobacterales 1590 10 order 25 213462 0 1 6 family 1149 19 0 213468 1 Syntrophaceae 312 genus 1 60892 0 60893 0 312 1 species Desulfobacca acetoxidans Desulfomonile 2357 0 1 2 449 genus 2 species 1 447 0 2358 Desulfomonile tiedjei 43773 0 1 2 369 2 genus Syntrophus 316277 0 367 species 1 Syntrophus aciditrophicus 1 0 213465 1 3 family 416 Syntrophobacteraceae Syntrophobacter 10 415 genus 2 0 29526 1 Syntrophobacter fumaroxidans 405 species 1 119484 0 Desulfarculales 453227 0 1 1 4 order 579 578 3 family 24 0 1 453228 Desulfarculaceae 2 genus 554 9 1 0 453229 Desulfarculus 0 453230 545 species 1 Desulfarculus baarsii Desulfuromonadales 69541 0 1 104 24 order 9176 62 family 14 6047 0 1 213422 Geobacteraceae Geobacter 0 1 28231 11 genus 5489 91 Geobacter sulfurreducens 0 35554 415 species 1 Geobacter lovleyi 381 species 1 313985 0 1167 2 no rank 2627627 0 Geobacter sp. M18 0 443143 710 1 species Geobacter sp. M21 457 1 species 0 443144 1100 1 species 351604 0 Geobacter uraniireducens Geobacter pickeringii 0 345632 429 species 1 371 1 species 0 1340425 Geobacter anodireducens 418 1 species 0 1203471 Geobacter daltonii 1 species 488 225194 0 Geobacter bemidjiensis Geobacter metallireducens 0 28232 1 species 629 1 0 392332 26 496 genus 2 Geoalkalibacter 0 483547 species 1 470 Geoalkalibacter subterraneus 1 0 213421 28 family 9 3025 Desulfuromonadaceae Pelobacter 5 genus 1635 55 0 1 18 398 1 species 0 29542 Pelobacter acetylenicus Pelobacter carbinolicus 0 19 348 1 species Pelobacter propionicus 0 29543 430 1 species 0 2620299 no rank 1 404 0 1842532 species 1 404 Pelobacter sp. SFB93 Desulfuromonas 0 890 1 1362 3 genus 16 0 2614637 631 no rank 1 1823759 0 1 species 631 Desulfuromonas sp. DDH964 Desulfuromonas soudanensis 1603606 0 species 1 715 29 0 1 306 30098 order 38 Myxococcales suborder 26 17457 80811 0 84 9 family 5332 39 0 1 Archangiaceae 3 2192 genus 2 0 1 47 Archangium 1 species 2189 0 48 Archangium gephyra Cystobacter 0 1 42 9 2 genus 1232 Cystobacter fuscus 43 0 1223 1 species Melittangium 0 44 1 2 1006 genus 2 Melittangium boletus 0 83453 1 species 1004 0 40 1 genus 2 818 2 Stigmatella 816 species 1 41 0 Stigmatella aurantiaca 0 1524213 1 803 3 family 10 Vulgatibacteraceae genus 2 793 7 0 1524214 1 Vulgatibacter Vulgatibacter incomptus 1391653 0 786 1 species Anaeromyxobacteraceae 0 1 1524215 3599 5 family 20 58 genus 4 3579 161492 0 1 Anaeromyxobacter 0 2620896 2 no rank 1968 447217 0 949 species 1 Anaeromyxobacter sp. K Anaeromyxobacter sp. Fw109-5 1019 1 species 0 404589 Anaeromyxobacter dehalogenans 0 161493 1 species 1553 31 0 1 9 family 7723 39 Myxococcaceae 0 1 32 genus 5 5312 155 Myxococcus Myxococcus stipitatus 1117 1 species 0 83455 Myxococcus fulvus 1 species 2195 0 33 Myxococcus hansupus 0 1297742 1 species 979 866 species 1 34 0 Myxococcus xanthus 3 genus 2372 53 1 0 83461 Corallococcus Corallococcus coralloides 0 184914 species 1 1294 Myxococcus macrosporus 1 species 1025 0 35 9875 suborder 8 80812 0 0 1 1055686 2156 family 3 6 Sandaracinaceae Sandaracinus 0 1 1055688 9 2150 genus 2 2141 1 species 0 927083 Sandaracinus amylolyticus Polyangiaceae 27 5 family 7719 0 1 49 Sorangium 0 39643 1 22 6182 genus 2 0 56 species 1 6160 Sorangium cellulosum Chondromyces 2 genus 2 1510 50 0 1 Chondromyces crocatus 52 0 1508 species 1 224462 0 2460 suborder 3 9 2460 3 family 0 224464 1 Kofleriaceae 1 0 162027 15 2 genus 2451 Haliangium 2436 1 species 0 80816 Haliangium ochraceum 0 508458 phylum 10 1382 1382 10 class 649775 0 0 649776 1 1382 10 order 13 Synergistales Synergistaceae 1369 family 9 4 0 649777 1 0 336260 321 genus 1 0 336261 321 1 species Thermovirga lienii Cloacibacillus 0 1 508459 4 264 2 genus Cloacibacillus porcorum 260 1 species 0 1197717 0 49894 270 1 genus Acetomicrobium mobile 0 97477 270 species 1 Thermanaerovibrio 4 2 genus 189 0 81461 1 Thermanaerovibrio acidaminovorans 0 81462 species 1 185 Aminobacterium 2 genus 321 9 1 0 81466 Aminobacterium colombiense 0 81468 species 1 312 0 2323 3 no rank 1346 1346 clade 3 0 1783234 0 95818 phylum 1 159 0 1895827 159 no rank 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 0 species 1 159 95901 0 2 clade 1187 1187 class 2 0 2497643 1187 order 2 2497644 0 family 2 1187 0 2497645 0 1 1551504 26 genus 2 1187 Candidatus Babela Candidatus Babela massiliensis 1161 species 1 673862 0 20009 phylum 44 200918 0 Thermotogae 20009 class 44 31 0 188708 1 Petrotogales 15 8 order 6849 0 1643947 1 6834 7 family 0 1643949 Petrotoga 28236 0 1 1056 genus 2 3 0 69499 1053 species 1 Petrotoga mobilis 40 genus 3 4124 0 160798 1 Marinitoga 0 2640159 1963 no rank 1 Marinitoga sp. 1137 species 1 1963 0 1545835 Marinitoga piezophila 0 149715 2121 species 1 Defluviitoga 0 1511648 1 genus 2 1654 4 species 1 1650 0 1006576 Defluviitoga tunisiensis Kosmotogales 16 order 7 1316 1 0 1643946 1 0 1643948 1300 6 family 2 Kosmotogaceae 1 0 1184396 328 2 genus 6 Mesotoga 0 1184387 1 species 322 Mesotoga prima Kosmotoga 4 3 genus 970 0 1 651456 514 species 1 1330330 0 Kosmotoga pacifica Kosmotoga olearia 452 1 species 0 651457 Thermotogales 25 11813 order 28 2419 0 1 Fervidobacteriaceae 16 10 family 7583 0 1643950 1 genus 4 1913 27 0 1 2422 Fervidobacterium Fervidobacterium pennivorans 0 93466 756 species 1 800 1 species 0 2424 Fervidobacterium nodosum 2423 0 330 1 species Fervidobacterium islandicum Thermosipho 2420 0 1 5 genus 5654 35 Thermosipho melanesiensis species 1 1291 46541 0 2676525 0 no rank 2 2656 1 species 1325 0 1437364 Thermosipho sp. 1070 Thermosipho sp. 1063 0 1462747 1 species 1331 Thermosipho africanus 1672 species 1 2421 0 Thermotogaceae 14 4205 17 family 188709 0 1 Thermotoga 11 genus 2091 44 1 0 2335 149 species 1 93929 0 Thermotoga petrophila Thermotoga caldifontis 0 1508419 139 species 1 Thermotoga profunda 0 1508420 1 species 579 2336 0 1 species 210 Thermotoga maritima 2631113 0 618 no rank 4 0 126740 species 1 124 Thermotoga sp. RQ2 Thermotoga sp. Cell2 1 species 126 1157947 0 Thermotoga sp. 2812B 184 species 1 0 1157948 Thermotoga sp. RQ7 184 1 species 0 126738 Thermotoga naphthophila 151 species 1 0 93930 Thermotoga neapolitana 1 species 201 0 2337 1643951 0 1 2100 genus 5 22 Pseudothermotoga 671 1 species 0 38322 Pseudothermotoga elfii 1 species 613 0 119394 Pseudothermotoga thermarum Pseudothermotoga lettingae 674 species 1 0 177758 Pseudothermotoga hypogea 0 57487 120 1 species 1783257 0 102 clade 29938 phylum 26 6722 204428 0 6722 class 26 27 204429 0 1 Chlamydiia Parachlamydiales 1963360 0 1 1942 11 order 4 92713 0 1 6 1163 5 family Parachlamydiaceae 282132 0 1 2 genus 2 436 Candidatus Protochlamydia 434 species 1 0 389348 Candidatus Protochlamydia naegleriophila Parachlamydia 83551 0 1 721 genus 2 5 Parachlamydia acanthamoebae 0 83552 species 1 716 Waddliaceae 0 92714 1 2 family 3 401 Waddlia 0 1 71666 2 399 2 genus 0 71667 397 1 species Waddlia chondrophila 374 2 family 92712 0 2 genus 374 2 34093 0 1 Simkania Simkania negevensis 0 83561 372 1 species Chlamydiales 14 order 4753 8 51291 0 1 Chlamydiaceae 0 809 1 family 13 4745 10 4735 12 no rank 0 1113537 Chlamydia 0 810 1 68 4735 12 genus 1 species 501 83557 0 Chlamydia caviae 0 813 1 species 400 Chlamydia trachomatis 0 1457153 401 species 1 Chlamydia gallinacea Chlamydia pneumoniae 1 species 481 0 83558 Chlamydia felis 83556 0 1 species 510 83555 0 352 species 1 Chlamydia abortus Chlamydia muridarum 1 species 333 83560 0 1 species 572 0 83554 Chlamydia psittaci Chlamydia suis 269 1 species 0 83559 Chlamydia avium 416 1 species 0 1457141 1 species 432 0 85991 Chlamydia pecorum 256845 0 phylum 3 510 Lentisphaeria 1 0 1313211 15 510 3 class Victivallales order 2 495 14 0 278082 1 0 1674876 481 no rank 1 Victivallales bacterium CCUG 44730 481 1 species 0 2094242 Planctomycetes 1 0 203682 39 phylum 14905 2 0 1 203683 27 class 10638 25 Planctomycetia order 2 999 2691355 0 0 1914233 999 family 2 20 999 2 genus 0 1 113 Gemmata 0 2622970 no rank 1 979 species 1 979 0 1630693 Gemmata sp. SH-PL17 2556 7 order 2691356 0 Isosphaeraceae 21 7 family 2556 0 1763524 1 0 1 127 9 544 2 genus Isosphaera 535 species 1 128 0 Isosphaera pallida Paludisphaera 0 1763521 1 1091 2 genus 1 species 1 1090 0 1387353 Paludisphaera borealis 17 900 2 genus 1 0 466152 Singulisphaera Singulisphaera acidiphila 883 1 species 0 466153 2181 order 6 2691354 0 2691357 0 1784 family 4 Rhodopirellula 7 984 genus 2 1 0 265488 1 species 977 0 265606 Rhodopirellula baltica Pirellula genus 2 800 3 0 123 1 Pirellula staleyi 0 125 species 1 797 0 2691358 397 family 2 0 1676125 1 1 2 genus 397 Thermogutta Thermogutta terrifontis 1331910 0 1 species 396 order 11 4877 111 0 1 112 Planctomycetales 46 4766 10 family 1 0 126 Planctomycetaceae 1 0 1649480 2 genus 473 4 Planctopirus 0 120 469 species 1 Planctopirus limnophila 3 genus 2289 22 1 0 118 Planctomyces 0 2648843 no rank 2 2267 species 1 1087 0 1636152 Planctomyces sp. SH-PL62 1180 1 species 0 1632864 Planctomyces sp. SH-PL14 Rubinisphaera 7 genus 2 899 1649490 0 1 892 1 species 0 119 Rubinisphaera brasiliensis Fuerstia genus 2 1059 7 1936111 0 1 Fuerstia marisgermanicae 0 1891926 1052 species 1 666505 0 1 1874 class 7 21 Phycisphaerae 0 2483366 order 2 635 635 family 2 2483367 0 0 2483368 genus 2 635 Phycisphaerae bacterium ST-PulAB-D4 284 species 1 1941349 0 351 species 1 0 1940790 Phycisphaerae bacterium L21-RPul-D3 Phycisphaerales 0 1 666506 order 4 1218 17 Phycisphaeraceae 0 666507 1 1 3 family 1201 2 genus 1200 5 666508 0 1 Phycisphaera Phycisphaera mikurensis 1195 1 species 0 547188 2391 class 4 0 2517206 2391 4 order 16 1 0 1127829 Candidatus Brocadiales 2375 3 family 3 1127830 0 1 Candidatus Brocadiaceae Candidatus Kuenenia genus 2 2372 1 380738 0 1 0 174633 1 species 2371 Candidatus Kuenenia stuttgartiensis 553 5 phylum 134625 0 Kiritimatiellae 0 1921781 1 class 5 553 5 2 4 order 548 1 0 1921782 Kiritimatiellales 0 1921783 1 3 family 3 546 Kiritimatiellaceae 0 1921784 1 3 2 genus 543 Kiritimatiella Kiritimatiella glycovorans 0 1307763 540 1 species 0 74201 1 7248 phylum 29 14 Verrucomicrobia 0 1 1955630 1 class 6 1212 Methylacidiphilae Methylacidiphilales order 5 1211 5 0 1 717963 Methylacidiphilaceae 717964 0 1 1 family 4 1206 511745 0 1 8 1205 3 genus Methylacidiphilum Methylacidiphilum fumariolicum 0 591154 750 species 1 1 species 447 0 511746 Methylacidiphilum infernorum 203494 0 1 880 class 6 4 Verrucomicrobiae 1 0 48461 14 876 5 order Verrucomicrobiales 4 family 862 4 1 0 1647988 Akkermansiaceae 1 0 239934 15 858 3 genus Akkermansia Akkermansia glycaniphila 0 1679444 species 1 429 Akkermansia muciniphila 0 239935 1 species 414 414999 0 1 3678 class 12 16 Opitutae 1 0 415001 6 1300 4 order Puniceicoccales Puniceicoccaceae 6 1294 3 family 0 415002 1 1 0 442430 3 1288 genus 2 Coraliomargarita Coraliomargarita akajimensis 0 395922 1285 species 1 Opitutales 415000 0 1 2362 order 7 21 Opitutaceae 0 134623 1 family 6 2341 25 Opitutus 1 0 178440 3 725 2 genus 0 107709 722 1 species Opitutus terrae 1 no rank 876 278955 0 Opitutaceae bacterium TAV5 0 794903 species 1 876 Lacunisphaera 715 genus 2 3 1 0 1961799 0 1838286 1 species 712 Lacunisphaera limnophila 241 2 class 134549 0 Candidatus Xiphinematobacter 0 1 134550 17 genus 2 241 1 no rank 224 2648876 0 224 species 1 0 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 1223 no rank 2 0 417295 Verrucomicrobia bacterium IMCC26134 1637999 0 species 1 500 2026799 0 1 species 723 Verrucomicrobia bacterium 2138240 0 402 3 phylum 1 0 2138243 1 3 class 402 Coprothermobacteria Coprothermobacterales 1 0 2138246 401 2 order 7 2138247 0 family 1 394 genus 1 394 68335 0 Coprothermobacter proteolyticus 1 species 394 0 35786 0 1783270 377 clade 327992 phylum 5 514 0 65842 Fibrobacteria 1 0 204430 2 5 class 514 0 218872 1 1 4 order 512 Fibrobacterales Fibrobacteraceae 511 3 family 6 0 204431 1 Fibrobacter 1 genus 2 505 0 1 832 Fibrobacter succinogenes 504 species 1 0 833 0 68336 324336 362 clade phylum 22 6028 0 1090 191410 0 1 29 6028 22 class Chlorobia Chlorobiales order 21 5999 33 191411 0 1 20 family 5966 64 1 0 191412 Chlorobiaceae 98 genus 4 1054 256319 0 1 Chlorobaculum 0 274539 1 species 295 Chlorobaculum parvum Chlorobaculum tepidum 300 species 1 0 1097 361 1 species 274537 0 Chlorobaculum limnaeum 2986 8 no rank 0 274493 0 1099 1 2 3 genus 701 Pelodictyon Pelodictyon luteolum species 1 277 0 1100 422 1 species 0 34090 Pelodictyon phaeoclathratiforme Chlorobium 68 2285 5 genus 1091 0 1 Chlorobium chlorochromatii 0 337090 1 species 512 0 1096 1079 1 species Chlorobium phaeobacteroides Chlorobium limicola species 1 374 0 1092 Chlorobium phaeovibrioides 252 species 1 1094 0 genus 2 647 1 0 1 100715 Chloroherpeton Chloroherpeton thalassium 0 100716 1 species 646 0 1 1101 1215 genus 5 82 Prosthecochloris 3 no rank 859 0 2632826 0 1868325 species 1 301 Prosthecochloris sp. CIB 2401 Prosthecochloris sp. HL-130-GSB 275 1 species 0 1974213 283 species 1 0 281093 Prosthecochloris sp. GSB1 274 species 1 0 1102 Prosthecochloris aestuarii 0 1134404 7 phylum 3565 7 class 7 3565 795747 0 1 Ignavibacteria 20 6 order 3558 0 1 795748 Ignavibacteriales 1334117 0 608 2 family 1 2 genus 608 1 0 1134403 Melioribacter Melioribacter roseus 607 1 species 0 1134405 Ignavibacteriaceae 3 family 2930 9 795749 0 1 2921 genus 2 5 1 0 795750 Ignavibacterium 0 591197 1 species 2916 Ignavibacterium album Bacteroidetes phylum 333 314743 37 0 976 1 0 1100069 1 29 2403 order 7 Bacteroidetes Order II. Incertae sedis Rhodothermaceae 0 1 563843 2374 6 family 20 no rank 1 852 1196022 0 852 species 1 0 1779382 Rhodothermaceae bacterium RA 29548 0 1 8 814 genus 2 Rhodothermus Rhodothermus marinus 29549 0 species 1 806 Salinibacter 0 146918 1 2 2 genus 688 Salinibacter ruber 146919 0 1 species 686 Bacteroidia 55 class 70 24508 1 0 200643 0 1 1970189 5129 12 order 48 Marinilabiliales 1 0 558415 1058 3 family 10 Marinilabiliaceae 1193324 0 1 13 2 genus 1048 Alkalitalea 1035 species 1 0 889453 Alkalitalea saponilacus Prolixibacteraceae 3 1051 family 3 1471398 0 1 0 1 1471399 11 1048 genus 2 Draconibacterium Draconibacterium orientale 1037 1 species 0 1168034 1 0 1573805 1 1820 2 family Marinifilaceae 1819 genus 1 0 2060722 0 1717717 species 1 1819 Marinifilaceae bacterium SPP2 Salinivirgaceae 3 family 1152 5 1970190 0 1 genus 2 1147 2 0 1 1970191 Salinivirga Salinivirga cyanobacteriivorans 0 1307839 1 species 1145 Bacteroidales 147 19324 57 order 1 0 171549 7 family 1513 2 1 0 2005525 Tannerellaceae Tannerella genus 3 715 6 195950 0 1 0 2620507 no rank 1 261 Tannerella sp. oral taxon HOT-286 1 species 261 0 712710 Tannerella forsythia species 1 448 28112 0 0 1 375288 15 genus 3 796 Parabacteroides 386 no rank 1 0 2649774 Parabacteroides sp. CT06 species 1 386 0 2025876 0 823 395 1 species Parabacteroides distasonis 1796 family 5 0 2005520 2 468 genus 2 294702 0 1 Proteiniphilum Proteiniphilum saccharofermentans 0 1642647 466 1 species genus 1 298 307628 0 298 species 1 1642646 0 Petrimonas mucosa 1030 genus 2 5 0 1 1784836 Fermentimonas 1562970 0 1 species 1025 Fermentimonas caenicola 1053 family 2 2005523 0 2 genus 1053 2 0 346096 1 Paludibacter Paludibacter propionicigenes 1 species 1051 0 185300 333046 0 5 no rank 3622 Candidatus Azobacteroides 4 genus 2 1901 0 511434 1 Candidatus Azobacteroides pseudotrichonymphae species 1 1897 0 511435 1721 genus 3 0 909656 Bacteroides salanitronis 1 species 544 376805 0 Bacteroides dorei 357276 0 species 1 614 0 821 563 species 1 Bacteroides vulgatus Rikenellaceae 1 family 5 613 0 171550 1 Mucinivorans 1 0 1611681 genus 2 310 13 Mucinivorans hirudinis 0 1433126 297 1 species Alistipes 1 0 239759 1 302 2 genus Alistipes finegoldii 0 214856 301 species 1 0 1 171551 805 4 family 4 Porphyromonadaceae Porphyromonas 801 3 genus 10 1 0 836 Porphyromonas gingivalis 1 species 502 0 837 species 1 289 0 28123 Porphyromonas asaccharolytica 0 1853231 family 2 522 2 genus 522 3 0 283168 1 Odoribacter Odoribacter splanchnicus 0 28118 519 species 1 family 11 3718 4 0 1 171552 Prevotellaceae Prevotella 0 838 1 22 genus 10 3714 52227 0 297 1 species Prevotella dentalis 0 28131 1149 1 species Prevotella intermedia 0 2638335 no rank 1 553 Prevotella sp. oral taxon 299 1 species 553 0 652716 Prevotella jejuni 320 species 1 0 1177574 species 1 186 0 76123 Prevotella enoeca 359 species 1 0 28132 Prevotella melaninogenica species 1 320 0 839 Prevotella ruminicola Prevotella denticola 1 species 184 0 28129 0 589436 1 species 324 Prevotella fusca 466 no rank 1 185291 0 1 species 466 0 1400053 Bacteroidales bacterium CF Barnesiellaceae 1 253 3 family 1 0 2005519 Barnesiella 0 397864 1 2 genus 252 3 Barnesiella viscericola 0 397865 249 species 1 Bacteroidaceae 3 11 family 4816 0 815 1 4813 10 genus 43 0 816 1 Bacteroides Bacteroides thetaiotaomicron 604 1 species 0 818 Bacteroides helcogenes 0 290053 382 1 species 0 28119 1 species 277 Bacteroides zoogleoformans 454 1 species 0 1796613 Bacteroides caecimuris 0 817 1029 species 1 Bacteroides fragilis species 1 337 0 28113 Bacteroides heparinolyticus 0 246787 627 1 species Bacteroides cellulosilyticus Bacteroides caccae species 1 466 0 47678 Bacteroides ovatus 1 species 594 0 28116 Chitinophagia 0 1 1853228 5 16 class 5931 Chitinophagales 15 order 5926 18 0 1 1853229 Chitinophagaceae 0 1 563835 5908 14 family 100 2 690 genus 2 1 0 649460 Filimonas species 1 688 0 477680 Filimonas lacunae Chitinophaga genus 3 1352 3 0 1 79328 79329 0 686 1 species Chitinophaga pinensis 0 2029983 species 1 663 Chitinophagaceae bacterium 13 Flavisolibacter 0 1 398041 997 2 genus 3 0 1492898 1 species 994 Flavisolibacter tropicus 1769012 0 genus 1 889 2636138 0 889 no rank 1 1850526 0 889 1 species Arachidicoccus sp. BS20 379899 0 1 1155 3 genus 8 Niabella Niabella ginsenosidivorans 1 species 590 0 1176587 Niabella soli 1 species 557 0 446683 Niastella 354354 0 1 4 725 genus 2 721 species 1 0 354356 Niastella koreensis 117747 0 1 20123 class 24 23 Sphingobacteriia Sphingobacteriales 60 order 23 20100 1 0 200666 0 1 84566 20040 family 22 61 Sphingobacteriaceae 1649482 0 1 1672 genus 2 7 Pseudopedobacter 1665 species 1 0 151895 Pseudopedobacter saltans Sphingobacterium 58 5493 genus 6 28453 0 1 4472 4 no rank 2609468 0 2003121 0 1 species 1120 Sphingobacterium sp. G1-14 Sphingobacterium sp. ML3W 0 1538644 1 species 1473 Sphingobacterium sp. B29 1933220 0 1 species 1082 Sphingobacterium sp. 21 0 743722 1 species 797 Sphingobacterium mizutaii 0 1010 963 species 1 1 no rank 2071 84568 0 0 1986952 2071 species 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 4 genus 2558 20 423349 0 1 Mucilaginibacter Mucilaginibacter gotjawali 0 1550579 species 1 1068 2617802 0 1 no rank 598 1300914 0 598 1 species Mucilaginibacter sp. PAMC 26640 Mucilaginibacter sp. BJC16-A31 1234841 0 species 1 872 Pedobacter 66 6 genus 6572 0 84567 1 0 430522 1 species 1203 Pedobacter steynii 1505 1 species 0 188932 Pedobacter cryoconitis 1 species 1087 0 984 Pedobacter heparinus 363852 0 1465 1 species Pedobacter ginsengisoli 1246 no rank 1 0 2628915 species 1 1246 0 1727164 Pedobacter sp. PACM 27299 Solitalea 13 1613 genus 2 1 0 929509 Solitalea canadensis 0 995 1600 species 1 5 class 1768 1937959 0 0 1 1936988 1768 5 order 7 Saprospirales 89374 0 633 family 2 Saprospira 1 0 1007 5 633 2 genus Saprospira grandis species 1 628 1008 0 0 1937961 family 2 1128 2349 0 1 9 2 genus 1128 Haliscomenobacter 1119 species 1 0 2350 Haliscomenobacter hydrossis 156 225085 class 148 117743 0 1 Flavobacteriia 0 1 200644 211 order 147 224929 Flavobacteriales 2762318 0 27026 family 20 1 genus 2221 34084 0 Riemerella anatipestifer species 1 2221 0 34085 2 2 genus 1072 28250 0 1 Ornithobacterium Ornithobacterium rhinotracheale 0 28251 1070 species 1 2782232 0 13532 10 no rank Chryseobacterium 0 59732 1 12847 9 genus 70 1658 species 1 0 558152 Chryseobacterium piperi 4552 3 no rank 0 2593645 0 2015076 1 species 1695 Chryseobacterium sp. T16E-39 Chryseobacterium sp. IHB B 17019 1 species 1256 0 1721091 0 878220 species 1 1601 Chryseobacterium sp. StRB126 1 species 1176 1324352 0 Chryseobacterium gallinarum Chryseobacterium indologenes 0 253 2654 species 1 549 1 species 0 1265445 Chryseobacterium camelliae Chryseobacterium glaciei 0 1685010 1 species 2188 0 2782228 685 1 genus Chryseobacterium taklimakanense species 1 685 536441 0 Elizabethkingia 1 0 308865 6 genus 9058 107 species 1 1950 172045 0 Elizabethkingia miricola 0 1756150 1140 1 species Elizabethkingia genomosp. 4 Elizabethkingia meningoseptica 0 238 species 1 1398 Elizabethkingia genomosp. 3 1306 1 species 0 1756149 1117645 0 3157 1 species Elizabethkingia anophelis genus 1 1143 0 1013 Weeksella virosa 1014 0 1143 species 1 1 0 39782 14 9969 family 10 Blattabacteriaceae Blattabacterium 0 34098 1 9955 9 genus 98 Blattabacterium punctulatus 1293 species 1 0 164514 2647581 0 7243 no rank 6 0 39768 1047 species 1 Blattabacterium sp. (Mastotermes darwiniensis) Blattabacterium sp. (Blaberus giganteus) species 1 1346 0 1186051 Blattabacterium sp. (Periplaneta americana) 1201 1 species 0 367488 Blattabacterium sp. (Blatta orientalis) 367806 0 1 species 1031 0 1316444 species 1 1334 Blattabacterium sp. (Nauphoeta cinerea) 1284 species 1 624186 0 Blattabacterium sp. (Blattella germanica) Blattabacterium cuenoti 0 1653831 species 1 1321 1242 2 family 0 1333713 Owenweeksia 1242 genus 2 28 0 267986 1 Owenweeksia hongkongensis 1214 1 species 0 253245 Cryomorphaceae 0 246874 1 family 9 Ichthyobacteriaceae 1 0 1755828 1352 3 family 23 Ichthyobacterium 1 0 1755829 30 1329 genus 2 1 species 1299 0 242600 Ichthyobacterium seriolicida 3 no rank 2544 313602 0 Candidatus Sulcia 0 1 336809 8 genus 2 2055 Candidatus Sulcia muelleri 336810 0 2047 1 species genus 1 489 1940138 0 0 1415657 species 1 489 Candidatus Walczuchella monophlebidarum Flavobacteriaceae 104 family 180924 825 0 49546 1 genus 1 3136 0 1649495 1 no rank 3136 0 2622645 Seonamhaeicola sp. S2-3 0 1936081 3136 1 species 0 216431 genus 1 2766 0 313588 2766 species 1 Croceibacter atlanticus 0 153265 1587 genus 1 Aequorivita sublithincola 0 101385 1587 1 species 61432 0 3728 no rank 2 Flavobacteriaceae bacterium UJ101 0 1150389 3104 species 1 624 species 1 0 531844 Flavobacteriaceae bacterium 3519-10 0 1 52959 21139 genus 6 162 Polaribacter 0 996801 4861 1 species Polaribacter reichenbachii Polaribacter vadi 4871 species 1 1774273 0 196858 0 no rank 3 11245 Polaribacter sp. MED152 species 1 4125 0 313598 Polaribacter sp. ALD11 2058137 0 species 1 3251 0 1529069 3869 species 1 Polaribacter sp. BM10 Myroides 1 0 76831 5 genus 5197 126 0 76832 1317 species 1 Myroides odoratimimus Myroides profundi 480520 0 1277 1 species 0 2642485 2477 2 no rank 1221 1 species 0 1458492 Myroides sp. ZB35 0 1583100 species 1 1256 Myroides sp. A21 1 0 291183 genus 4 9774 66 Lacinutrix 0 2647285 6624 2 no rank 3286 species 1 0 2057808 Lacinutrix sp. Bg11-31 1 species 3338 983544 0 Lacinutrix sp. 5H-3-7-4 0 1486034 1 species 3084 Lacinutrix venerupis 336276 0 genus 1 2789 no rank 1 2789 2615019 0 2789 species 1 0 2058135 Olleya sp. Bg11-27 Muricauda 2645 3 genus 12 0 1 111500 0 111501 species 1 1319 Muricauda ruestringensis Muricauda lutaonensis 0 516051 species 1 1314 1 0 1016 11089 15 genus 99 Capnocytophaga Capnocytophaga sputigena 1 species 1362 0 1019 4091 no rank 6 2640652 0 Capnocytophaga sp. oral taxon 323 0 1705617 435 species 1 1 species 923 0 1945657 Capnocytophaga sp. H2931 519 species 1 1316593 0 Capnocytophaga sp. oral taxon 864 Capnocytophaga sp. oral taxon 878 species 1 725 1316596 0 899 1 species 0 1945658 Capnocytophaga sp. H4358 590 1 species 0 209053 Capnocytophaga sp. ChDC OS43 1422 species 1 0 28188 Capnocytophaga canimorsus Capnocytophaga ochracea 488 species 1 0 1018 0 45243 1 species 397 Capnocytophaga haemolytica Capnocytophaga leadbetteri 0 327575 533 species 1 Capnocytophaga stomatis 0 1848904 species 1 990 1 species 589 0 1017 Capnocytophaga gingivalis 0 28189 1 species 1118 Capnocytophaga cynodegmi Algibacter 3318 genus 2 2 261827 0 1 0 1736674 3316 1 species Algibacter alginicilyticus 0 1518147 1 genus 2838 Wenyingzhuangia fucanilytica 2838 species 1 0 1790137 104267 0 1 31 14275 genus 5 Tenacibaculum 0 1850252 3989 1 species Tenacibaculum todarodis Tenacibaculum dicentrarchi 0 669041 2862 species 1 species 1 2924 107401 0 Tenacibaculum maritimum species 1 4469 0 584609 Tenacibaculum jejuense 1 0 83612 2 genus 2 2242 Psychroflexus Psychroflexus torquis 57029 0 1 species 2240 1 0 252306 genus 2 473 1 Robiginitalea 0 252307 472 1 species Robiginitalea biformata 0 1 178469 genus 2 1386 2 Arenibacter Arenibacter algicola 1384 species 1 616991 0 0 417127 2117 genus 1 0 398743 species 1 2117 Zunongwangia profunda Gramella genus 5 5520 24 0 1 292691 Gramella flava 1 species 907 0 1486245 Gramella sp. SH35 0 2126553 1242 1 species 1768 1 species 0 411153 Gramella forsetii 0 1913577 1579 1 species Gramella sp. LPB0144 2 genus 4071 11 358023 0 1 Lutibacter 0 1622118 4060 1 species Lutibacter profundi 5 4048 genus 3 0 1 225842 Formosa 0 2644710 2 no rank 4043 0 1336795 species 1 2303 Formosa sp. Hel3_A1_48 Formosa sp. Hel1_33_131 1740 1 species 0 1336794 0 2700084 4569 genus 1 0 1850246 4569 1 species Lutibacter sp. LPB0138 Maribacter 5 genus 8656 69 1 0 252356 1 species 1437 0 1178778 Maribacter cobaltidurans 7150 no rank 3 2615042 0 species 1 2718 0 1644130 Maribacter sp. 1_2014MBL_MicDiv 0 313603 species 1 1929 Maribacter sp. HTCC2170 Maribacter sp. T28 0 1836467 1 species 2503 Nonlabens 7697 5 genus 191 0 1 363408 no rank 2 3611 2615035 0 2058134 0 1581 1 species Nonlabens sp. MB-3u-79 2030 species 1 1476901 0 Nonlabens sp. MIC269 Nonlabens dokdonensis species 1 1805 0 328515 0 319236 2090 species 1 Nonlabens sediminis 802 genus 1 112040 0 63186 0 1 species 802 Zobellia galactanivorans 30 6129 genus 4 0 1 326319 Dokdonia Dokdonia donghaensis 1 species 2149 0 326320 2615033 0 2 no rank 3950 Dokdonia sp. MED134 313590 0 2128 species 1 Dokdonia sp. 4H-3-7-5 1 species 1822 983548 0 0 1176327 978 1 genus 0 2636237 no rank 1 978 0 2094025 1 species 978 Aureitalea sp. RR4-38 0 1 1204360 2 genus 2 2671 Siansivirga 0 762954 1 species 2669 Siansivirga zeaxanthinifaciens Winogradskyella 286104 0 1 18 genus 3 5836 0 2615021 no rank 2 5818 Winogradskyella sp. J14-2 2400 1 species 0 1936080 0 754409 3418 1 species Winogradskyella sp. PG-2 2101 genus 1 0 393005 Tamlana sp. UJ94 2101 species 1 0 2069432 2420 genus 1 0 1209327 species 1 2420 0 1803846 Flavivirga eckloniae Flavobacterium 39 21340 9 genus 237 0 1 0 96345 1 species 2218 Flavobacterium psychrophilum 0 1763534 1275 1 species Flavobacterium crassostreae Flavobacterium branchiophilum 1979 species 1 0 55197 0 1306519 1827 species 1 Flavobacterium commune 0 312277 2795 species 1 Flavobacterium indicum Flavobacterium columnare 1 species 4215 0 996 4954 species 1 0 986 Flavobacterium johnsoniae Flavobacterium gilvum 2038 species 1 0 1492737 143222 0 1879 genus 1 2633436 0 1 no rank 1879 0 1729720 1879 species 1 Salegentibacter sp. T436 Cellulophaga 0 1 104264 39 genus 4 9670 species 1 3407 0 979 Cellulophaga lytica Cellulophaga algicola species 1 2996 59600 0 0 76594 1 species 3228 Cellulophaga baltica 389486 0 1213 genus 1 2648869 0 1 no rank 1213 Sediminicola sp. YIK13 0 1453352 species 1 1213 Crocinitomicaceae 1853230 0 1 5 3 family 1652 Fluviicola 4 1647 genus 2 0 332102 1 191579 0 1 species 1643 Fluviicola taffensis 0 768503 1 52 34888 62 class Cytophagia Cytophagales 0 1 768507 178 61 order 34836 Bernardetiaceae 0 1937968 1 30 3300 3 family Bernardetia 1 0 1937972 3270 genus 2 28 1 species 3242 0 999 Bernardetia litoralis 0 2762301 2 family 2299 869806 0 1 9 2299 2 genus Marivirga Marivirga tractuosa 0 1006 species 1 2290 0 1853232 1 6740 16 family 29 Hymenobacteraceae Pontibacter 6 genus 3 1104 323449 0 1 species 1 622 0 400092 Pontibacter korlensis 388950 0 476 species 1 Pontibacter akesuensis Hymenobacter 89966 0 1 49 3998 genus 8 2851 no rank 5 2615202 0 Hymenobacter sp. DG25B 0 1385664 species 1 350 1 species 746 0 1484116 Hymenobacter sp. PAMC 26554 732 species 1 1484118 0 Hymenobacter sp. PAMC 26628 Hymenobacter sp. DG25A 1385663 0 349 species 1 1356852 0 674 species 1 Hymenobacter sp. APR13 species 1 557 1411621 0 Hymenobacter sedentarius Hymenobacter swuensis 1446467 0 541 1 species Rufibacter 11 genus 4 1609 1379908 0 1 2639626 0 no rank 2 992 species 1 464 0 1379909 Rufibacter sp. DG15C 0 1379910 528 1 species Rufibacter sp. DG31D species 1 606 0 512763 Rufibacter tibetensis 1 0 200667 4 family 6030 7 Flammeovirgaceae 1 no rank 3482 340671 0 Flammeovirgaceae bacterium 311 species 1 3482 0 1257021 0 59739 1 2541 2 genus 12 Flammeovirga 0 2637820 2529 1 no rank Flammeovirga sp. MY04 0 1191459 1 species 2529 Cytophagaceae family 17 6685 20 0 1 89373 Leadbetterella 1 0 319458 genus 2 863 3 species 1 860 0 316068 Leadbetterella byssophila 3 655 2 genus 120831 0 1 Dyadobacter 0 94254 1 species 652 Dyadobacter fermentans 1 0 107 20 2619 6 genus Spirosoma 2057025 0 species 1 775 Spirosoma sp. HA7 Spirosoma aerolatum 0 1211326 535 1 species 396 species 1 564064 0 Spirosoma rigui 0 1379870 species 1 469 Spirosoma radiotolerans Spirosoma montaniterrae 0 1178516 species 1 424 0 978 1 1204 2 genus 39 Cytophaga 1165 species 1 0 985 Cytophaga hutchinsonii 364 genus 2 2 1 0 861914 Fibrella 1 no rank 362 0 2620963 362 species 1 0 1834519 Fibrella sp. ES10-3-2-2 0 1 105 7 960 genus 2 Runella 1 species 953 0 106 Runella slithyformis 1 0 563798 7145 10 family 13 Cyclobacteriaceae genus 2 755 14 0 390846 1 Echinicola Echinicola vietnamensis 1 species 741 0 390884 Cyclobacterium 17 genus 3 3267 1 0 68288 320787 0 1701 species 1 Cyclobacterium amurskyense Cyclobacterium marinum 0 104 1549 species 1 8 1127 2 genus 1 0 246875 Algoriphagus 1 species 1119 1727163 0 Algoriphagus sp. M8-2 Belliella genus 2 1983 17 232244 0 1 1 species 1966 0 232259 Belliella baltica Persicobacteraceae 3 3 family 1294 1 0 1853234 genus 2 1291 13 59740 0 1 Persicobacter 1278 1 no rank 2664020 0 Persicobacter sp. JZB09 0 1085624 1278 1 species 1165 family 5 3 0 1 1501348 Amoebophilaceae Candidatus Amoebophilus 11 2 genus 778 0 281119 1 281120 0 767 1 species Candidatus Amoebophilus asiaticus 5 384 2 genus 0 1 273135 Candidatus Cardinium no rank 1 379 2641185 0 249402 0 379 1 species Cardinium endosymbiont of Encarsia pergandiella phylum 2 737 0 456828 Candidatus Cloacimonas 0 456826 1 1 737 genus 2 Candidatus Cloacimonas acidaminovorans 0 456827 736 1 species 0 142182 2405 phylum 8 2405 class 8 16 1 0 219685 Gemmatimonadetes 0 219686 1 2389 order 7 21 Gemmatimonadales Gemmatimonadaceae family 6 2368 21 0 1 219687 0 1 1706036 1367 genus 2 2 Gemmatirosa 0 861299 species 1 1365 Gemmatirosa kalamazoonesis 0 1 173479 14 3 genus 980 Gemmatimonas Gemmatimonas phototrophica 1 species 463 1379270 0 Gemmatimonas aurantiaca 173480 0 species 1 503 1783272 0 1696 clade 9692446 Actinobacteria 0 201174 1 281929 647 phylum 30 4 no rank 1906 1752188 0 species 1 696 0 1848754 Actinobacteria bacterium IMCC19121 species 1 354 0 1848755 Actinobacteria bacterium IMCC26077 Actinobacteria bacterium IMCC25003 0 1848255 334 1 species Actinobacteria bacterium IMCC26103 0 1848756 1 species 522 3 2452 5 class 1 0 1497346 Thermoleophilia 37 4 order 2449 588673 0 1 Solirubrobacterales 15 2412 family 3 1 0 320583 Conexibacteraceae Conexibacter 191494 0 1 9 2397 2 genus Conexibacter woesei species 1 2388 0 191495 0 1 1760 971 594 class 269073 Actinobacteria 1 0 85009 74 order 33 9320 Propionibacteriales 68 family 13 4825 0 85015 1 Nocardioidaceae Nocardioides 0 1839 1 4 genus 1973 52 Nocardioides sp. 78 0 2045452 503 1 species Nocardioides dokdonensis 0 450734 species 1 704 1 no rank 714 2615069 0 Nocardioides sp. JS614 714 1 species 0 196162 0 2044 1 11 genus 2 977 Pimelobacter Pimelobacter simplex 1 species 966 0 2045 Aeromicrobium 0 2040 1 2 genus 2 588 Aeromicrobium erythreum 0 2041 species 1 586 genus 2 450 17 0 1 116071 Micropruina Micropruina glycogenica 0 75385 1 species 433 41 769 genus 2 0 182639 1 Kribbella 0 182640 728 1 species Kribbella flavida 86 family 19 4421 0 1 31957 Propionibacteriaceae 5 654 3 genus 0 1743 1 Propionibacterium 1 species 545 0 1744 Propionibacterium freudenreichii 0 2608905 104 1 no rank 104 species 1 0 671223 Propionibacterium sp. oral taxon 193 genus 5 1571 14 72763 0 1 Tessaracoccus Tessaracoccus aquimaris species 1 445 0 1332264 0 2635419 441 1 no rank Tessaracoccus sp. T2.5-30 441 species 1 0 1909732 Tessaracoccus flavescens 0 399497 359 1 species 0 1610493 312 species 1 Tessaracoccus flavus 203133 0 genus 1 161 0 2633994 161 1 no rank Propionimicrobium sp. Marseille-P3275 0 1871034 161 species 1 526 genus 2 6 0 1912215 1 Acidipropionibacterium 1748 0 520 species 1 Acidipropionibacterium acidipropionici 1 0 1912216 4 genus 681 8 Cutibacterium Cutibacterium avidum 263 1 species 0 33010 Cutibacterium granulosum 175 species 1 0 33011 Cutibacterium acnes 1 species 235 0 1747 Microlunatus 2 genus 2 462 29404 0 1 1 species 460 29405 0 Microlunatus phosphovorus 2801844 0 1 genus 280 species 1 280 1750 0 Pseudopropionibacterium propionicum 0 1 2039638 26 order 12 7373 Candidatus Nanopelagicales 0 2162846 11 family 7347 Candidatus Nanopelagicus 0 2039639 1 3719 genus 4 21 Candidatus Nanopelagicus abundans species 1 1400 0 1884916 Candidatus Nanopelagicus limnes 1175 1 species 1884634 0 Candidatus Nanopelagicus hibericus 1884915 0 species 1 1123 genus 7 3628 39 1 0 622681 Candidatus Planktophila Candidatus Planktophila vernalis 537 species 1 0 1884907 0 1884914 1 species 696 Candidatus Planktophila dulcis 639 1 species 0 1884905 Candidatus Planktophila versatilis Candidatus Planktophila lacus 1 species 630 0 1884913 1 species 357 0 1884904 Candidatus Planktophila sulfonica species 1 730 0 573600 Candidatus Planktophila limnetica 2 order 8 2184 0 1643682 1 Geodermatophilales Geodermatophilaceae 0 1 85030 7 family 2182 85 Modestobacter 1 0 88138 697 2 genus 12 0 477641 species 1 685 Modestobacter marinus 0 1 38501 689 genus 2 13 Blastococcus species 1 676 138336 0 Blastococcus saxobsidens 0 1 1860 4 711 2 genus Geodermatophilus Geodermatophilus obscurus 0 1861 species 1 707 Micrococcales 144 order 42726 341 85006 0 1 0 85019 1 13 family 3 648 Brevibacteriaceae Brevibacterium 1696 0 1 genus 2 635 8 Brevibacterium linens 627 species 1 0 1703 Dermatophilaceae 1 0 85018 4 271 family 3 Dermatophilus 0 1862 1 1 267 genus 2 Dermatophilus congolensis 1 species 266 1863 0 27 3378 family 9 1 0 85017 Promicromonosporaceae 0 1 254250 19 3 genus 1276 Isoptericola Isoptericola dokdonensis 627 species 1 0 372663 1 species 630 139208 0 Isoptericola variabilis 3 1422 3 genus 1 0 157920 Cellulosimicrobium 0 1710 692 1 species Cellulosimicrobium cellulans 0 2624466 1 no rank 727 727 species 1 0 1980001 Cellulosimicrobium sp. TH-20 0 186188 1 4 653 2 genus Xylanimonas 0 186189 649 1 species Xylanimonas cellulosilytica Dermacoccaceae 16 7 family 1316 1 0 145357 Luteipulveratus 2 genus 564 6 745364 0 1 Luteipulveratus mongoliensis 0 571913 1 species 558 genus 2 412 10 0 57495 1 Dermacoccus Dermacoccus nishinomiyaensis 0 1274 402 1 species 1 0 57499 2 genus 324 10 Kytococcus 1276 0 species 1 314 Kytococcus sedentarius Micrococcaceae 9856 39 family 127 0 1268 1 1 genus 163 0 1645 Renibacterium salmoninarum 1 species 163 0 1646 Rothia 426 3 genus 5 1 0 32207 259 1 species 0 43675 Rothia mucilaginosa 0 2047 1 species 162 Rothia dentocariosa 196 1 genus 0 2078575 1618207 0 196 species 1 Arthrobacter sp. IHBB 11108 genus 4 1021 16 0 1 1742993 Pseudarthrobacter 370 species 1 0 361575 Pseudarthrobacter phenanthrenivorans Pseudarthrobacter sulfonivorans 0 121292 1 species 314 Pseudarthrobacter chlorophenolicus 0 85085 321 1 species 1742992 0 1 4 331 2 genus Paenarthrobacter Paenarthrobacter aurescens 1 species 327 0 43663 Micrococcus 0 1 1269 361 genus 2 5 356 species 1 1270 0 Micrococcus luteus Arthrobacter 1 0 1663 138 15 genus 4984 0 656366 592 1 species Arthrobacter alpinus Arthrobacter crystallopoietes 1 species 376 0 37928 0 235627 3878 12 no rank Arthrobacter sp. ZXY-2 0 1806905 242 species 1 1357915 0 345 species 1 Arthrobacter sp. QXT-31 1652545 0 272 species 1 Arthrobacter sp. YC-RL1 Arthrobacter sp. YN species 1 267 0 2020486 0 1690248 1 species 274 Arthrobacter sp. LS16 Arthrobacter sp. U41 365 1 species 0 1849032 Arthrobacter sp. Rue61a 1118963 0 229 species 1 Arthrobacter sp. FB24 296 species 1 0 290399 Arthrobacter sp. ATCC 21022 238 1 species 0 1771959 1 species 646 0 2079227 Arthrobacter sp. PGP41 397 species 1 0 1704044 Arthrobacter sp. ERGS1:01 Arthrobacter sp. PAMC 25486 0 1494608 307 1 species Neomicrococcus 215 2 genus 2 0 1868332 1 556325 0 213 1 species Neomicrococcus aestuarii 18 genus 2 371 1 0 1742989 Glutamicibacter Glutamicibacter arilaitensis species 1 353 0 256701 Kocuria 1098 4 genus 16 57493 0 1 1 species 246 72000 0 Kocuria rhizophila Kocuria flava species 1 505 0 446860 Kocuria palustris 0 71999 species 1 331 5 genus 2 563 596707 0 1 Sinomonas 558 species 1 0 37927 Sinomonas atrocyanea 0 85021 1 9 family 2339 26 Intrasporangiaceae Intrasporangium 53357 0 1 3 2 genus 550 species 1 547 0 53358 Intrasporangium calvum 0 1 265976 2 genus 608 2 Serinicoccus 0 1758689 606 1 species Serinicoccus sp. JLT9 0 1 267408 3 genus 2 571 Arsenicicoccus 2663846 0 1 no rank 568 0 1658671 species 1 568 Arsenicicoccus sp. oral taxon 190 32 genus 2 584 0 1 53457 Janibacter 0 857417 1 species 552 Janibacter indicus 577468 0 no rank 2 230 Tropheryma 230 genus 2 3 0 1 2038 227 species 1 0 2039 Tropheryma whipplei 4048 family 11 28 0 1 85020 Dermabacteraceae genus 2 171 7 0 36739 1 Dermabacter Dermabacter vaginalis species 1 164 0 1630135 0 1 472568 261 2 genus 35 Devriesea 226 species 1 472569 0 Devriesea agamarum 43668 0 1 genus 6 3588 45 Brachybacterium 2623841 0 no rank 1 546 Brachybacterium sp. P6-10-X1 546 species 1 1903186 0 Brachybacterium sp. VR2415 1 species 439 0 2017485 0 2017484 1 species 1672 Brachybacterium sp. VM2412 Brachybacterium faecium 0 43669 436 species 1 1331682 0 1 species 450 Brachybacterium ginsengisoli 11 6 family 2370 0 85016 1 Cellulomonadaceae 2359 5 genus 19 0 1 1707 Cellulomonas 571 no rank 1 0 2620175 species 1 571 2003551 0 Cellulomonas sp. PSBB021 597 1 species 0 1711 Cellulomonas flavigena Cellulomonas fimi 0 1708 689 species 1 species 1 483 0 11 Cellulomonas gilvus 8 605 3 family 0 1 145360 Sanguibacteraceae Sanguibacter 60919 0 1 2 genus 597 8 589 1 species 0 60920 Sanguibacter keddieii 2 712 3 family 0 125316 1 Beutenbergiaceae Beutenbergia 710 2 genus 16 0 84756 1 1 species 694 0 84757 Beutenbergia cavernae 85023 0 1 134 46 family 16478 Microbacteriaceae 518733 0 1 478 genus 2 1 Microterricola Microterricola viridarii 0 412690 477 1 species 1107 1 genus 447237 0 2626248 0 no rank 1 1107 Frondihabitans sp. PAMC 28766 0 1795630 1 species 1107 1655488 0 552 no rank 3 552 clade 3 1655489 0 0 529883 1 552 3 genus 16 Rhodoluna Rhodoluna lacicola 290 species 1 0 529884 Candidatus Rhodoluna planktonica 0 535712 species 1 246 0 1705353 1 genus 234 0 708131 1 species 234 Aurantimicrobium minutum Microcella 1 0 337004 2 genus 376 7 Microcella alkaliphila 369 species 1 0 279828 2034 0 1 17 4 genus 1592 Curtobacterium 998 no rank 2 0 257496 Curtobacterium sp. MR_MD2014 510 1 species 1561023 0 Curtobacterium sp. BH-2-1-1 488 1 species 1905847 0 1 species 577 0 69373 Curtobacterium pusillum 2 780 3 genus 1 0 33886 Rathayibacter 0 33888 420 1 species Rathayibacter tritici 0 145458 1 species 358 Rathayibacter toxicus Leifsonia 903 genus 2 8 110932 0 1 Leifsonia xyli 895 species 1 1575 0 genus 1 172 1434032 0 Pontimonas salivibrio 0 1159327 1 species 172 Cryobacterium 0 69578 1 genus 3 956 17 538 species 1 0 670052 Cryobacterium arcticum 0 2649013 1 no rank 401 401 1 species 0 1978566 Cryobacterium sp. LW097 Microbacterium 5794 genus 14 95 33882 0 1 0 300019 409 1 species Microbacterium paludicola 0 84292 species 1 370 Microbacterium chocolatum Microbacterium hominis 0 162426 species 1 454 0 2609290 3504 no rank 8 1916917 0 species 1 344 Microbacterium sp. 1.5R 0 367477 359 1 species Microbacterium sp. XT11 Microbacterium sp. PAMC 28756 0 1795053 1 species 393 0 1938334 1 species 376 Microbacterium sp. TPU 3598 Microbacterium sp. No. 7 718 1 species 0 1714373 Microbacterium sp. BH-3-3-3 0 1906742 1 species 553 Microbacterium sp. CGR1 347 1 species 0 1696072 Microbacterium sp. str. 'China' 0 2103230 species 1 414 Microbacterium aurum 0 36805 405 species 1 2033 0 557 species 1 Microbacterium testaceum 68 genus 6 2230 1573 0 1 Clavibacter 1 0 28447 486 species 5 2162 Clavibacter michiganensis Clavibacter insidiosus 0 33014 376 1 subspecies Clavibacter nebraskensis 340 subspecies 1 0 31963 Clavibacter capsici 0 1874630 subspecies 1 425 535 subspecies 1 0 31964 Clavibacter sepedonicus Agromyces 691 2 genus 4 33877 0 1 687 1 species 0 453304 Agromyces aureus 0 1759331 genus 1 479 0 1619308 1 species 479 Cnuibacter physcomitrellae Jonesiaceae 3 134 2 family 0 1 85022 131 1 genus 0 43673 species 1 131 0 43674 Jonesia denitrificans Actinomycetales 10 3569 18 order 1 0 2037 Actinomycetaceae 17 family 3559 77 0 1 2049 0 2529408 1 genus 173 Actinomyces meyeri species 1 173 0 52773 91 2481 genus 9 0 1654 1 Actinomyces Actinomyces radicidentis 0 111015 species 1 517 2609248 0 1057 no rank 3 Actinomyces sp. oral taxon 414 492 species 1 712122 0 0 2081702 1 species 238 Actinomyces sp. oral taxon 897 Actinomyces sp. Chiba101 327 species 1 0 1851395 Actinomyces gaoshouyii species 1 252 0 1960083 0 544580 254 1 species Actinomyces oris 0 1912795 1 species 131 Actinomyces sp. VUL4_3 Actinomyces pacaensis 179 1 species 0 1852377 Arcanobacterium 0 1 28263 genus 2 241 4 237 1 species 0 28264 Arcanobacterium haemolyticum 221 1 genus 1069494 0 Trueperella pyogenes 221 1 species 0 1661 142 2 genus 2 1 0 1653174 Actinotignum 0 59505 140 1 species Actinotignum schaalii 0 2050 224 1 genus 224 species 1 0 2051 Mobiluncus curtisii 1 0 622452 3 4 order 694 Kineosporiales 0 1 83778 8 3 family 691 Kineosporiaceae 1 0 33981 2 genus 2 683 Kineococcus 131568 0 1 species 681 Kineococcus radiotolerans 2 no rank 529 0 1643818 2 genus 529 7 147067 0 1 Thermobispora Thermobispora bispora species 1 522 0 2006 0 1 85008 19 order 20 10759 Micromonosporales 0 28056 1 219 10740 19 family Micromonosporaceae 0 84593 genus 1 8 Verrucosispora genus 3 882 26 1 0 168694 Salinispora Salinispora arenicola 168697 0 470 1 species species 1 386 0 168695 Salinispora tropica genus 4 2481 55 673534 0 1 Plantactinospora 2631981 0 2426 no rank 3 0 2024580 775 species 1 Plantactinospora sp. KBS50 Plantactinospora sp. BC1 838 1 species 2108470 0 0 2071627 813 1 species Plantactinospora sp. BB1 Micromonospora 1873 0 1 genus 4 2229 26 Verrucosispora maris 0 1003110 1 species 635 749 1 no rank 2617518 0 Micromonospora sp. L5 0 648999 species 1 749 Micromonospora aurantiaca species 1 819 0 47850 47 genus 6 4921 0 1 1865 Actinoplanes 874 1 species 0 196914 Actinoplanes friuliensis 986 1 species 0 1866 Actinoplanes missouriensis 2626549 0 no rank 3 3014 Actinoplanes sp. N902-109 874 1 species 0 649831 species 1 1070 0 2033844 Actinoplanes sp. SE50 species 1 1070 134676 0 Actinoplanes sp. SE50/110 0 52018 844 1 no rank Actinobacteria bacterium IMCC26256 0 1650658 1 species 844 Streptomycetales 0 85011 1 81614 order 82 163 Streptomycetaceae 0 1 2062 81 family 81451 296 0 1 1883 75 genus 75885 1499 Streptomyces 75293 0 2115 1 species Streptomyces autolyticus 0 408015 595 species 1 Streptomyces xiamenensis 0 38300 799 1 species Streptomyces pristinaespiralis 643 1 species 0 68192 Streptomyces cyaneogriseus species 1 688 0 146923 Streptomyces parvulus Streptomyces albus 0 1888 species 1 2095 818 1 species 0 68214 Streptomyces griseochromogenes 0 1616117 1292 1 species Streptomyces formicae Streptomyces venezuelae 0 54571 1925 species 1 Streptomyces puniciscabiei 0 164348 species 1 797 1007 1 species 0 362257 Streptomyces vietnamensis 704 1 species 0 1950 Streptomyces peucetius species group 2 3025 1477431 0 1 species 762 42239 0 Streptomyces sampsonii 1 species 2263 0 1902 Streptomyces coelicolor 758 species 1 1935 0 Streptomyces violaceoruber 0 1437453 637 species 1 Streptomyces leeuwenhoekii species 1 852 0 42684 Streptomyces collinus Streptomyces lydicus 0 47763 species 1 2322 Streptomyces hygroscopicus 1 species 1981 1912 0 1537 2 species group 0 629295 0 1482558 1 species subgroup 765 0 1908 765 1 species Streptomyces globisporus species subgroup 1 772 1482596 0 Streptomyces griseus 772 species 1 1911 0 0 1355015 594 1 species Streptomyces pluripotens Streptomyces pratensis 1169025 0 species 1 633 Streptomyces albulus species 1 3597 0 68570 Streptomyces xinghaiensis species 1 705 0 1038928 0 1969 species 1 707 Streptomyces chartreusis 977 species 1 1889 0 Streptomyces ambofaciens 0 193462 species 1 824 Streptomyces niveus 0 68249 species 1 1778 Streptomyces pactum Streptomyces bingchenggensis 0 379067 1294 species 1 0 33903 species 1 941 Streptomyces avermitilis Streptomyces fulvissimus 775 species 1 0 68202 1 species 730 285473 0 Streptomyces rubrolavendulae 0 67267 891 species 1 Streptomyces alboflavus Streptomyces scabiei 0 1930 999 1 species 0 2049881 1 species 726 Streptomyces sp. XZHG99 species 1 1034 0 92644 Streptomyces malaysiensis Streptomyces albireticuli 0 1940 species 1 838 Streptomyces glaucescens 1 species 735 0 1907 68280 0 860 species 1 Streptomyces violaceusniger 0 553510 1 species 1011 Streptomyces gilvosporeus Streptomyces lividans 825 species 1 1916 0 1 species 817 1783515 0 Streptomyces sp. S10(2016) 972 species 1 0 1914 Streptomyces lavendulae Streptomyces lincolnensis 1021 1 species 1915 0 Streptomyces alfalfae 1065 species 1 0 1642299 Streptomyces reticuli 0 1926 1 species 1043 species 1 834 0 1971 Streptomyces noursei 24 no rank 21153 2593676 0 0 2059884 949 1 species Streptomyces sp. CMB-StM0423 Streptomyces sp. MOE7 0 1961713 species 1 865 Streptomyces sp. SirexAA-E 862751 0 600 species 1 Streptomyces sp. fd1-xmd 0 1812480 species 1 856 0 444103 842 species 1 Streptomyces sp. CNQ-509 2094021 0 1 species 876 Streptomyces sp. WAC00288 0 1751294 690 1 species Streptomyces sp. 4F 878 species 1 0 465541 Streptomyces sp. Mg1 0 1661694 730 1 species Streptomyces sp. Tue 6075 Streptomyces sp. 3211 1145 species 1 0 1964449 Streptomyces sp. Sge12 1041 species 1 0 1972846 Streptomyces sp. PAMC 26508 species 1 628 0 1265601 0 1841249 876 species 1 Streptomyces sp. RTd22 1 species 794 0 1649184 Streptomyces sp. CFMR 7 Streptomyces sp. S8 0 1837283 1 species 708 species 1 1120 0 2135430 Streptomyces sp. P3 1 species 895 0 1984801 Streptomyces sp. CLI2509 1495638 0 1264 species 1 Streptomyces sp. M56 1849967 0 1107 species 1 Streptomyces sp. SAT1 Streptomyces sp. CCM_MD2014 760 species 1 0 1561022 1 species 942 1262452 0 Streptomyces sp. 769 1 species 696 0 234612 Streptomyces sp. TN58 Streptomyces sp. FR-008 206662 0 979 1 species species 1 912 1725411 0 Streptomyces sp. CdTB01 Streptomyces clavuligerus species 1 755 0 1901 29303 0 1 species 662 Streptomyces cattleya Kitasatospora 5270 5 genus 33 1 0 2063 1 species 1374 0 2066 Kitasatospora setae no rank 1 953 0 2633591 0 2018025 953 species 1 Kitasatospora sp. MMS16-BH015 Kitasatospora albolonga 68173 0 1 species 2079 Kitasatospora aureofaciens species 1 831 0 1894 3 order 591 0 1643684 0 1 85031 14 591 3 family Nakamurellaceae 0 53460 1 genus 2 577 18 Nakamurella Nakamurella multipartita species 1 559 0 53461 85012 0 1 68 5922 15 order Streptosporangiales 0 1 83676 16 7 family 2333 Nocardiopsaceae 294 genus 2 11 83677 0 1 Thermobifida Thermobifida fusca 0 2021 species 1 283 0 1 2013 2023 4 genus 39 Nocardiopsis 1 species 442 0 53437 Nocardiopsis alba Nocardiopsis gilva 1 species 599 0 280236 0 2014 1 species 943 Nocardiopsis dassonvillei family 5 2851 40 1 0 2004 Streptosporangiaceae 19 genus 2 1658 0 83681 1 Nonomuraea 1 no rank 1639 2593643 0 1909395 0 1639 1 species Nonomuraea sp. ATCC 55076 Streptosporangium 2 genus 1153 8 0 1 2000 Streptosporangium roseum 2001 0 species 1 1145 0 2012 670 family 2 Thermomonospora genus 2 670 15 1 0 2019 Thermomonospora curvata 1 species 655 0 2020 85010 0 1 24163 41 order 62 Pseudonocardiales 0 2070 1 260 40 family 24101 Pseudonocardiaceae 142577 0 genus 1 589 0 530584 589 1 species Prauserella marina Saccharopolyspora 1 0 1835 881 2 genus 4 species 1 877 0 1836 Saccharopolyspora erythraea 1 0 1851 genus 2 406 1 Saccharomonospora 405 1 species 0 1852 Saccharomonospora viridis 1 0 40566 33 3 genus 2130 Actinosynnema Actinosynnema pretiosum 954 1 species 0 42197 1143 species 1 0 40567 Actinosynnema mirum 1 0 2029 16 2 genus 937 Kibdelosporangium Kibdelosporangium phytohabitans 0 860235 921 species 1 Alloactinosynnema 0 1 674734 2 genus 739 11 1 no rank 728 2636053 0 Alloactinosynnema sp. L-07 728 species 1 0 1653480 Actinoalloteichus 66 3119 genus 6 65496 0 1 Actinoalloteichus sp. ADI127-7 0 1612552 773 1 species Actinoalloteichus hymeniacidonis 1 species 420 0 340345 616 1 species 1470176 0 Actinoalloteichus hoggarensis 0 2644606 no rank 2 1244 Actinoalloteichus sp. AHMU CJ021 0 2072503 1 species 619 Actinoalloteichus sp. GBA129-24 0 1612551 625 species 1 1847 0 1 genus 8 6113 134 Pseudonocardia 2619320 0 no rank 6 4994 Pseudonocardia sp. AL041005-10 0 445576 1 species 878 896 1 species 0 1688404 Pseudonocardia sp. EC080610-09 Pseudonocardia sp. HH130630-07 0 1690815 species 1 867 724 1 species 0 1641402 Pseudonocardia sp. HH130629-09 species 1 856 1096856 0 Pseudonocardia sp. EC080619-01 0 1096868 species 1 773 Pseudonocardia sp. EC080625-04 0 240495 985 1 species Pseudonocardia dioxanivorans 0 1 1813 5940 genus 7 58 Amycolatopsis Amycolatopsis japonica 208439 0 species 1 886 Amycolatopsis mediterranei 0 33910 1 species 1097 1657 2 no rank 0 2618356 Amycolatopsis sp. AA4 1 species 835 1896961 0 Amycolatopsis sp. BJA-103 822 species 1 0 1911175 Amycolatopsis orientalis 31958 0 1482 1 species Amycolatopsis methanolica 0 1814 760 1 species Lentzea 1069 2 genus 9 165301 0 1 Lentzea guizhouensis species 1 1060 0 1586287 Kutzneria 28 900 2 genus 43356 0 1 Kutzneria albida 872 species 1 43357 0 Saccharothrix 0 2071 1 2 genus 1018 12 Saccharothrix espanaensis 0 103731 1 species 1006 18 25 order 5529 0 85004 1 Bifidobacteriales 0 31953 1 family 24 5511 75 Bifidobacteriaceae Scardovia 1 0 196081 2 genus 179 6 Scardovia inopinata 0 78259 173 species 1 131 genus 1 0 196082 Parascardovia denticolens 78258 0 species 1 131 2701 0 828 1 genus 0 2702 828 species 1 Gardnerella vaginalis Bifidobacterium 72 4298 genus 19 1 0 1678 0 28026 1 species 162 Bifidobacterium pseudocatenulatum 0 1680 172 1 species Bifidobacterium adolescentis 317 1 species 0 158787 Bifidobacterium scardovii Bifidobacterium bifidum 1681 0 species 1 276 0 1684 155 1 species Bifidobacterium asteroides Bifidobacterium choerinum 316 species 1 0 35760 Bifidobacterium actinocoloniiforme 0 638619 272 1 species Bifidobacterium indicum 0 1691 118 1 species 260 1 species 0 28025 Bifidobacterium animalis Bifidobacterium pseudolongum 0 1694 1 species 359 0 1 1686 116 303 species 2 Bifidobacterium catenulatum Bifidobacterium kashiwanohense subspecies 1 187 0 630129 0 1689 179 species 1 Bifidobacterium dentium Bifidobacterium thermophilum 0 33905 1 species 140 1683 0 1 species 166 Bifidobacterium angulatum 0 1687 species 1 118 Bifidobacterium coryneforme Bifidobacterium longum 517 1 species 0 216816 1 species 396 0 1685 Bifidobacterium breve order 4 748 2 85014 0 1 Glycomycetales Glycomycetaceae 51 746 3 family 0 85034 1 Stackebrandtia 695 2 genus 9 283810 0 1 Stackebrandtia nassauensis 686 1 species 283811 0 1643683 0 3 order 331 3 family 331 8 85032 0 1 Acidothermaceae Acidothermus 1 0 28048 323 2 genus 23 Acidothermus cellulolyticus species 1 300 0 28049 Corynebacteriales 341 163 order 63375 0 85007 1 1762 0 1 57 family 27197 90 Mycobacteriaceae Mycobacterium 837 14999 34 genus 0 1 1763 587 species 1 482462 0 Mycobacterium dioxanotrophicus 0 261524 413 1 species Mycobacterium liflandii 2642494 0 5762 13 no rank species 1 440 0 2051552 Mycobacterium sp. PYR15 1920667 0 1 species 419 Mycobacterium sp. WY10 535 species 1 0 1879023 Mycobacterium sp. djl-10 0 212767 species 1 550 Mycobacterium sp. JS623 Mycobacterium sp. MCS 0 164756 499 1 species 0 1570328 428 1 species Mycobacterium sp. NRRL B-3805 443 species 1 0 1545728 Mycobacterium sp. EPa45 1 species 433 0 1273687 Mycobacterium sp. VKM Ac-1817D Mycobacterium sp. MOTT36Y 1168287 0 159 1 species 0 1561223 1 species 253 Mycobacterium sp. QIA-37 1 species 565 1682113 0 Mycobacterium sp. YC-RL4 Mycobacterium sp. KMS 0 189918 530 species 1 Mycobacterium sp. JLS 508 1 species 0 164757 1769 0 111 species 1 Mycobacterium leprae 420 species group 1 0 2249310 0 722731 species 1 420 Mycobacterium shigaense 8 species group 4094 120793 0 Mycobacterium colombiense 474 1 species 0 339268 2077 species 1 0 1764 Mycobacterium avium Mycobacterium marseillense 0 701042 336 1 species 1138383 0 159 1 species Mycobacterium paraintracellulare species 4 1048 268 1767 0 1 Mycobacterium intracellulare Mycobacterium yongonense 0 1203599 1 subspecies 166 Mycobacterium indicus pranii 35617 0 167 1 subspecies 0 222805 subspecies 1 447 Mycobacterium chimaera 1 species 433 0 1768 Mycobacterium kansasii 1069 species group 4 0 77643 Mycobacterium tuberculosis 3 species 840 307 0 1773 1 Mycobacterium africanum 262 biotype 1 0 33894 biotype 1 271 1765 0 Mycobacterium bovis 78331 0 229 1 species Mycobacterium canettii Mycobacterium ulcerans 393 1 species 0 1809 Mycobacterium marinum 1 species 686 0 1781 29311 0 species 1 194 Mycobacterium haemophilum 3615 5 genus 0 670516 0 83262 348 1 species Mycobacterium immunogenum 0 1520670 1 species 267 Mycobacterium stephanolepidis species 1 2440 0 36809 Mycobacterium abscessus Mycobacterium saopaulense species 1 264 0 1578165 Mycobacterium chelonae 1 species 296 0 1774 0 1 697025 280 2 genus 5 Hoyosella species 1 275 0 639313 Hoyosella subflava 13 genus 7349 1866885 0 1 species 457 0 758802 Mycobacterium litorale Mycobacterium thermoresistibile 0 1797 437 1 species 643 1 species 1772 0 Mycobacterium smegmatis 0 110539 species 1 591 Mycobacterium vanbaalenii 654 1 species 1800 0 Mycobacterium chubuense 390 1 species 0 36814 Mycobacterium rhodesiae Mycobacterium gilvum 771 1 species 0 1804 622 1 species 0 134601 Mycobacterium goodii Mycobacterium phlei 0 1771 1 species 665 Mycobacterium vaccae species 1 689 0 1810 0 1791 595 species 1 Mycobacterium aurum species 1 428 0 1795 Mycobacterium neoaurum Mycobacterium fortuitum 0 1766 407 species 1 2 genus 864 0 1073531 Mycobacterium sinense 417 species 1 875328 0 Mycobacterium terrae 447 species 1 0 1788 Tsukamurellaceae 85028 0 1 family 4 1211 8 Tsukamurella 1 0 2060 14 1203 3 genus 0 2061 441 1 species Tsukamurella paurometabola Tsukamurella tyrosinosolvens 1 species 748 57704 0 85029 0 1 3 827 family 4 Dietziaceae 11 824 genus 3 1 0 37914 Dietzia 1 species 297 499555 0 Dietzia timorensis 0 2617939 516 1 no rank Dietzia sp. oral taxon 368 516 1 species 0 712270 Corynebacteriaceae 1653 0 1 66 13110 family 52 1 0 1716 241 51 genus 13044 Corynebacterium 0 161896 153 1 species Corynebacterium camporealensis Corynebacterium doosanense 1121358 0 274 1 species Corynebacterium testudinoris 1 species 225 0 136857 218 1 species 0 1719 Corynebacterium pseudotuberculosis Corynebacterium uterequi 1072256 0 species 1 1066 0 187491 1 species 237 Corynebacterium glaucum Corynebacterium stationis 0 1705 181 species 1 28028 0 139 species 1 Corynebacterium flavescens 0 191493 365 species 1 Corynebacterium sphenisci 232 species 1 0 65058 Corynebacterium ulcerans 0 1231000 1 species 144 Corynebacterium lactis Corynebacterium mustelae 211 1 species 0 571915 1 species 146 0 1050174 Corynebacterium epidermidicanis 0 38305 385 1 species Corynebacterium vitaeruminis 292 species 1 0 38289 Corynebacterium jeikeium [Brevibacterium] flavum 0 92706 248 species 1 0 89154 species 1 255 Corynebacterium terpenotabidum 0 1408191 174 1 species Corynebacterium deserti Corynebacterium callunae 0 1721 species 1 216 95 species 1 0 161879 Corynebacterium kroppenstedtii 0 1697 species 1 117 Corynebacterium ammoniagenes 0 35755 361 species 1 Corynebacterium kutscheri species 1 210 0 160386 Corynebacterium casei Corynebacterium crudilactis 1652495 0 species 1 294 0 35757 species 1 267 Corynebacterium cystitidis 349751 0 269 species 1 Corynebacterium marinum Corynebacterium phocae 0 161895 164 species 1 Corynebacterium argentoratense 172 species 1 0 42817 0 1727 species 1 346 Corynebacterium variabile Corynebacterium diphtheriae 1 species 343 1717 0 Corynebacterium singulare 0 161899 species 1 151 Corynebacterium resistens 0 258224 1 species 184 2624378 0 no rank 2 320 Corynebacterium sp. ATCC 6931 1 species 125 1487956 0 0 702967 species 1 195 Corynebacterium sp. NML98-0116 Corynebacterium glutamicum 597 1 species 1718 0 Corynebacterium atypicum 0 191610 165 species 1 0 152794 195 1 species Corynebacterium efficiens Corynebacterium frankenforstense species 1 411 0 1230998 Corynebacterium ureicelerivorans 1 species 179 0 401472 Corynebacterium halotolerans 1 species 295 0 225326 233 1 species 0 203263 Corynebacterium aquilae 0 43770 1 species 327 Corynebacterium striatum 0 1404244 1 species 238 Corynebacterium glyciniphilum 218 species 1 0 108486 Corynebacterium falsenii Corynebacterium urealyticum 237 species 1 0 43771 Corynebacterium maris 0 575200 1 species 302 0 156978 233 1 species Corynebacterium imitans Corynebacterium aurimucosum 152 species 1 0 169292 1 species 378 0 1223514 Corynebacterium humireducens 189 1 species 0 146827 Corynebacterium simulans 0 85025 1 79 family 31 16939 Nocardiaceae 1827 0 1 11644 23 genus 314 Rhodococcus 192944 0 4633 no rank 12 0 1807790 224 species 1 Rhodococcus sp. BH4 402 species 1 1570939 0 Rhodococcus sp. 2G 1 species 516 0 1805827 Rhodococcus sp. MTM3W5.2 Rhodococcus sp. PBTS 2 343 species 1 0 1653479 741 species 1 0 1033922 Rhodococcus sp. WB1 455 1 species 0 935199 Rhodococcus sp. p52 Rhodococcus sp. H-CA8f 0 1727214 1 species 334 0 1045808 1 species 242 Rhodococcus sp. YL-1 species 1 310 0 679318 Rhodococcus sp. WMMA185 Rhodococcus sp. 008 0 1723645 262 species 1 Rhodococcus sp. PBTS 1 434 species 1 0 1653478 1 species 370 0 1564114 Rhodococcus sp. B7740 Rhodococcus hoagii 0 43767 1 species 490 Rhodococcus opacus 0 37919 species 1 1883 Rhodococcus rhodochrous 424 species 1 0 1829 species 1 401 1828 0 Rhodococcus fascians Rhodococcus aetherivorans species 1 640 0 191292 756 species 1 132919 0 Rhodococcus jostii Rhodococcus ruber 686 1 species 0 1830 Rhodococcus pyridinivorans 0 103816 1 species 577 Rhodococcus qingshengii 262 species 1 0 334542 species 1 578 0 1833 Rhodococcus erythropolis Nocardia 0 1817 1 genus 7 5216 51 829 species 1 0 37329 Nocardia farcinica Nocardia cyriacigeorgica 0 135487 966 species 1 Nocardia brasiliensis 1445 species 1 0 37326 0 37330 608 1 species Nocardia nova Nocardia seriolae 37332 0 585 species 1 732 1 species 0 455432 Nocardia terpenica 316606 0 1 315 family 3 1 Segniliparaceae Segniliparus 5 2 genus 314 286801 0 1 1 species 309 286802 0 Segniliparus rotundus 9 family 3287 13 0 1 85026 Gordoniaceae 8 genus 3274 43 2053 0 1 Gordonia 2657482 0 826 2 no rank Gordonia sp. YC-JH1 1 species 363 0 2059875 Gordonia sp. KTR9 337191 0 463 species 1 Gordonia terrae 0 2055 1 species 568 Gordonia polyisoprenivorans 516 1 species 0 84595 1004901 0 1 species 397 Gordonia iterans Gordonia phthalatica 0 1136941 1 species 435 Gordonia bronchialis 0 2054 1 species 489 0 697024 148 2 no rank Lawsonella 1 0 1847725 148 2 genus 1 1 species 147 1528099 0 Lawsonella clevelandensis Frankiales 52 4643 7 order 0 1 85013 Frankiaceae 4591 family 6 43 0 74712 1 Frankia 0 1854 1 5 genus 4548 69 Frankia casuarinae 106370 0 688 1 species 0 1859 1781 species 1 Frankia alni 2632575 0 1018 1 no rank Frankia sp. EAN1pec 1018 1 species 0 298653 Frankia inefficax 298654 0 992 1 species 395 order 4 3 0 1 622450 Actinopolysporales 0 622451 1 3 family 392 6 Actinopolysporaceae 0 1 1849 genus 2 386 7 Actinopolyspora 1 species 379 0 414996 Actinopolyspora erythraea Catenulisporales 4 order 2793 13 414714 0 1 Catenulisporaceae 25 2780 3 family 0 414877 1 2755 2 genus 22 414878 0 1 Catenulispora 0 304895 2733 species 1 Catenulispora acidiphila class 6 814 6 0 1 84995 Rubrobacteria 84996 0 1 order 5 808 26 Rubrobacterales 1 0 84997 21 782 family 4 Rubrobacteraceae Rubrobacter 12 761 genus 3 0 1 42255 324 species 1 42256 0 Rubrobacter radiotolerans Rubrobacter xylanophilus 0 49319 425 1 species Acidimicrobiia 84992 0 1 2601 7 class 2 Acidimicrobiales 1 0 84993 2599 6 order 36 2 family 1857 0 2448023 Ilumatobacter 2 genus 1857 20 1 0 682522 0 467094 1 species 1837 Ilumatobacter coccineus Acidimicrobiaceae 706 3 family 12 1 0 84994 1 0 53634 694 2 genus 43 Acidimicrobium Acidimicrobium ferrooxidans 1 species 651 0 53635 0 1 84998 18 5053 class 30 Coriobacteriia 0 1 1643822 24 3250 15 order Eggerthellales Eggerthellaceae 1 0 1643826 14 family 3226 73 Eggerthella 0 1 84111 genus 3 680 6 Eggerthella lenta 453 species 1 0 84112 2648737 0 1 no rank 221 Eggerthella sp. YY7918 0 502558 species 1 221 199 1 genus 84108 0 Slackia heliotrinireducens 199 1 species 84110 0 Denitrobacterium 0 1 79603 2 genus 243 2 Denitrobacterium detoxificans 0 79604 241 1 species Gordonibacter 644652 0 1 887 3 genus 28 Gordonibacter urolithinfaciens 1 species 422 1335613 0 species 1 437 0 1841863 Gordonibacter massiliensis 1981050 0 genus 1 599 Phoenicibacter massiliensis 599 1 species 1944646 0 235 genus 1 0 84162 84163 0 1 species 235 Cryptobacterium curtum 0 1 447020 2 2 genus 310 Adlercreutzia Adlercreutzia equolifaciens 446660 0 species 1 308 Coriobacteriales 84999 0 1 22 1785 order 14 0 1643824 1 11 1190 7 family Atopobiaceae 1 genus 317 2767353 0 Atopobium parvulum 0 1382 317 species 1 0 1 133925 genus 4 854 12 Olsenella 1 no rank 309 0 2638792 Olsenella sp. oral taxon 807 712411 0 1 species 309 Olsenella uli 133926 0 219 1 species 0 1805478 314 species 1 Olsenella sp. Marseille-P2300 Atopobium 8 1 genus 0 1380 7 6 family 573 0 84107 1 Coriobacteriaceae Collinsella 9 185 genus 2 0 1 102106 Collinsella aerofaciens 0 74426 1 species 176 260 no rank 1 84113 0 Coriobacteriaceae bacterium 68-1-3 species 1 260 0 1531429 Coriobacterium 10 121 2 genus 0 1 33870 0 33871 111 1 species Coriobacterium glomerans 1 0 1239 704 phylum 534880 141 Firmicutes 188 no rank 1 33974 0 1930845 0 1 genus 188 Ndongobacter massiliensis 1 species 188 0 1871025 2629 class 10 2 526524 0 1 Erysipelotrichia Erysipelotrichales 0 1 526525 order 9 2627 17 13 2610 family 8 0 128827 1 Erysipelotrichaceae 1 no rank 332 544447 0 Erysipelotrichaceae bacterium I46 0 1834207 species 1 332 genus 1 197 0 1729679 0 1702221 197 1 species Faecalibaculum rodentium Erysipelothrix 15 genus 3 1275 1 0 1647 Erysipelothrix rhusiopathiae 0 1648 682 species 1 Erysipelothrix larvae 578 species 1 0 1514105 Turicibacter 793 genus 2 2 191303 0 1 791 no rank 1 0 2638206 Turicibacter sp. H121 0 1712675 1 species 791 4 class 424 1676648 0 6 4 order 424 0 1676649 1 Limnochordales 1 0 1676650 2 418 3 family Limnochordaceae 45 416 2 genus 0 1 1676651 Limnochorda Limnochorda pilosa 1555112 0 species 1 371 no rank 1 1547 0 84086 endosymbiont 'TC1' of Trimyema compressum species 1 1547 243899 0 292 class 432 308793 91061 0 1 Bacilli 186826 0 1 order 164 96237 313 Lactobacillales 33 30543 family 49 0 1 1300 Streptococcaceae Lactococcus genus 5 5732 2 0 1357 1 0 1363 1 species 867 Lactococcus garvieae 335 species 1 0 1366 Lactococcus raffinolactis 0 1358 3829 species 1 Lactococcus lactis 0 1364 species 1 699 Lactococcus piscium Streptococcus 1301 0 1 24778 genus 43 284 Streptococcus pantholopis 0 1811193 1 species 362 2230 3 species group 671232 0 Streptococcus intermedius 792 species 1 0 1338 76860 0 1 species 420 Streptococcus constellatus Streptococcus anginosus 0 1328 1018 1 species 0 1326 1 species 318 Streptococcus acidominimus 356 species 1 0 1335 Streptococcus equinus 0 1309 856 species 1 Streptococcus mutans species 1 883 0 1313 Streptococcus pneumoniae Streptococcus pluranimalium 408 species 1 82348 0 Streptococcus pseudopneumoniae 270 species 1 257758 0 Streptococcus mitis 0 28037 1 species 840 Streptococcus macedonicus 0 59310 species 1 482 Streptococcus lutetiensis 0 150055 species 1 411 Streptococcus parauberis 700 1 species 0 1348 Streptococcus salivarius 0 1304 1 species 953 Streptococcus thermophilus 1 species 724 1308 0 Streptococcus agalactiae 0 1311 1311 species 1 Streptococcus halotolerans 1 species 284 0 1814128 Streptococcus infantarius 0 102684 765 1 species 1318 0 379 1 species Streptococcus parasanguinis Streptococcus himalayensis 0 1888195 1 species 303 0 400065 species 1 422 Streptococcus merionis 0 1314 1154 species 1 Streptococcus pyogenes Streptococcus cristatus 0 45634 1 species 199 0 1349 1 species 616 Streptococcus uberis 1 species 1046 1302 0 Streptococcus gordonii Streptococcus marmotae 370 1 species 0 1825069 Streptococcus oralis 0 1303 804 species 1 2608887 0 2127 7 no rank Streptococcus sp. 'group B' 627 1 species 0 1319 1 species 225 0 1902136 Streptococcus sp. NPS 308 Streptococcus sp. A12 0 1759399 species 1 255 1 species 194 1156433 0 Streptococcus sp. I-P16 Streptococcus sp. I-G2 1 species 228 1156431 0 1839799 0 1 species 313 Streptococcus sp. FDAARGOS_192 Streptococcus sp. oral taxon 431 285 1 species 712633 0 species group 2 1273 0 119603 0 1334 456 species 1 Streptococcus dysgalactiae Streptococcus equi 0 1336 species 1 817 Streptococcus gallolyticus 315405 0 1013 species 1 0 1305 259 1 species Streptococcus sanguinis 0 1346 species 1 531 Streptococcus iniae Streptococcus pasteurianus species 1 443 0 197614 Streptococcus suis 0 1307 1402 1 species 186827 0 1 6 2567 family 8 Aerococcaceae Aerococcus 1 0 1375 11 7 genus 2561 Aerococcus urinaehominis 0 128944 1 species 328 513 species 1 0 1376 Aerococcus urinae Aerococcus christensenii 448 1 species 0 87541 595 1 species 0 51665 Aerococcus urinaeequi 392 species 1 0 1377 Aerococcus viridans Aerococcus sanguinicola 0 119206 274 species 1 17 6788 10 family 186828 0 1 Carnobacteriaceae Jeotgalibaca 5 genus 3 1380 1470540 0 1 1 no rank 763 0 2621505 Jeotgalibaca sp. PTS2502 763 1 species 1903686 0 612 1 species 708126 0 Jeotgalibaca dankookensis 1147 genus 1 0 191769 1 no rank 1147 0 2632303 1 species 1147 0 1911586 Marinilactibacillus sp. 15R 0 1 2747 21 5 genus 4244 Carnobacterium 0 147709 1019 species 1 Carnobacterium inhibens 2 no rank 1718 257487 0 Carnobacterium sp. CP1 1564681 0 724 1 species 0 208596 species 1 994 Carnobacterium sp. 17-4 Carnobacterium maltaromaticum 0 2751 species 1 1486 Lactobacillaceae 1 0 33958 family 58 34569 45 0 2767892 1 genus 328 Lactobacillus paracollinoides 328 species 1 0 240427 2767889 0 2 genus 1157 Lactobacillus backii 742 species 1 0 375175 Lactobacillus coryniformis 1610 0 1 species 415 2767879 0 4098 genus 6 Lactobacillus farciminis 0 1612 species 1 657 1 species 750 1007676 0 Lactobacillus ginsenosidimutans species 1 789 0 1847728 Lactobacillus allii Lactobacillus alimentarius 0 1602 1 species 641 Lactobacillus heilongjiangensis 0 1074467 517 species 1 0 392416 species 1 744 Lactobacillus crustorum Pediococcus 6 genus 3107 26 1 0 1253 Pediococcus claussenii 0 187452 species 1 649 1670797 0 385 species group 1 Pediococcus acidilactici 1254 0 species 1 385 Pediococcus pentosaceus species 1 920 0 1255 Pediococcus damnosus 0 51663 580 1 species 114090 0 1 species 547 Pediococcus inopinatus 1 0 1578 10977 genus 16 296 Lactobacillus 1584 0 782 species 1 Lactobacillus delbrueckii 1604 0 685 species 1 Lactobacillus amylovorus Lactobacillus johnsonii 1504 1 species 0 33959 Lactobacillus amylolyticus 0 83683 species 1 433 1600 0 451 species 1 Lactobacillus acetotolerans Lactobacillus gallinarum 1 species 577 0 52242 Lactobacillus jensenii 0 109790 684 species 1 0 1587 1197 1 species Lactobacillus helveticus 267818 0 512 species 1 Lactobacillus kefiranofaciens 1596 0 1443 species 1 Lactobacillus gasseri 2620435 0 4 no rank 1751 2099788 0 380 1 species Lactobacillus sp. CBA3605 species 1 322 0 2099789 Lactobacillus sp. CBA3606 0 1545702 1 species 744 Lactobacillus sp. wkB8 Lactobacillus sp. D1501 species 1 305 0 2108362 0 1579 662 species 1 Lactobacillus acidophilus 2767890 0 genus 1 558 Lactobacillus hokkaidonensis 1193095 0 species 1 558 0 2767842 2166 3 genus 301 species 1 0 60520 Lactobacillus paraplantarum Lactobacillus pentosus species 1 254 0 1589 Lactobacillus plantarum 1611 species 1 0 1590 1231 genus 2 2767885 0 Lactobacillus sakei 0 1599 1 species 782 Lactobacillus curvatus 0 28038 449 species 1 0 2759736 1750 3 genus 0 1597 species 1 556 Lactobacillus paracasei 705 1 species 1582 0 Lactobacillus casei Lactobacillus rhamnosus 0 47715 1 species 489 1972 3 genus 2742598 0 1 species 1363 1598 0 Lactobacillus reuteri Lactobacillus mucosae 97478 0 1 species 328 Lactobacillus fermentum 0 1613 281 species 1 1 genus 244 2767876 0 Lactobacillus amylophilus 1 species 244 0 1603 2767877 0 genus 1 468 Lactobacillus kunkeei 0 148814 468 species 1 0 2767881 genus 2 1431 Lactobacillus lindneri 1 species 827 53444 0 Lactobacillus sanfranciscensis 0 1625 604 1 species 3222 4 genus 2767887 0 0 1624 1 species 2210 Lactobacillus salivarius Lactobacillus ruminis 0 1623 1 species 262 Lactobacillus agilis 327 species 1 0 1601 423 1 species 89059 0 Lactobacillus acidipiscis 1067 3 genus 0 2767893 0 152331 326 1 species Lactobacillus parabuchneri Lactobacillus curieae species 1 409 1138822 0 Lactobacillus buchneri species 1 332 0 1581 748 3 genus 0 2767886 Lactobacillus brevis 0 1580 species 1 438 Lactobacillus koreensis 194 species 1 0 637971 Lactobacillus zymae 116 1 species 0 267363 263855 0 823 no rank 1 0 1993866 species 1 823 Lactobacillales bacterium Leuconostocaceae 9 17 family 7599 81850 0 1 Weissella 5 genus 6 2338 46255 0 1 Weissella koreensis 0 165096 479 species 1 0 137591 331 species 1 Weissella cibaria species 1 522 1249 0 Weissella paramesenteroides Weissella jogaejeotgali 522 1 species 0 1631871 species 1 479 759620 0 Weissella ceti 623 genus 1 0 46254 0 1247 species 1 623 Oenococcus oeni Leuconostoc genus 9 4629 26 1243 0 1 Leuconostoc gelidum 1 species 1034 0 1244 476 no rank 1 2685106 0 Leuconostoc sp. C2 0 979982 species 1 476 255248 0 1 species 154 Leuconostoc garlicum Leuconostoc carnosum 0 1252 species 1 715 1 species 1062 0 1245 Leuconostoc mesenteroides Leuconostoc citreum 0 33964 459 1 species Leuconostoc kimchii 1 species 459 0 136609 Leuconostoc lactis 244 species 1 1246 0 13035 family 20 17 0 81852 1 Enterococcaceae 0 1 51668 genus 2 1152 1 Tetragenococcus 51669 0 1151 species 1 Tetragenococcus halophilus Enterococcus 8640 genus 12 74 1 0 1350 0 37734 species 1 465 Enterococcus casseliflavus Enterococcus faecium species 1 1457 0 1352 1 species 747 0 417368 Enterococcus thailandicus Enterococcus durans 0 53345 1 species 706 0 53346 1 species 748 Enterococcus mundtii 3 no rank 1388 0 2608891 Enterococcus sp. FDAARGOS_163 451 species 1 0 2060306 0 2060307 species 1 498 Enterococcus sp. FDAARGOS_375 2057791 0 1 species 439 Enterococcus sp. CR-Ec1 Enterococcus wangshanyuanii 0 2005703 767 species 1 species 1 1402 0 1351 Enterococcus faecalis Enterococcus hirae species 1 886 0 1354 1349 genus 2 6 33969 0 1 Melissococcus Melissococcus plutonius 1343 1 species 0 33970 1 0 2737 11 1877 genus 3 Vagococcus Vagococcus teuberi 519472 0 966 species 1 0 633807 900 1 species Vagococcus penaei Bacillales order 267 212264 413 0 1385 1 45683 family 42 82 0 1 90964 Staphylococcaceae 1 0 45669 genus 2 327 1 Salinicoccus 326 species 1 407035 0 Salinicoccus halodurans 16 4 genus 2273 1 0 69965 Macrococcus Macrococcus caseolyticus 0 69966 species 1 738 2619255 0 no rank 1 960 Macrococcus sp. IME1552 1 species 960 0 1898474 0 1855823 559 1 species Macrococcus canis Staphylococcus 0 1 1279 355 42166 genus 33 170573 0 species 1 431 Staphylococcus pettenkoferi 1235 species 1 0 29385 Staphylococcus saprophyticus Staphylococcus cohnii 0 29382 species 1 1132 Staphylococcus warneri 0 1292 1222 species 1 787 species 1 0 985762 Staphylococcus agnetis 1 species 1422 643214 0 Staphylococcus stepanovicii species 1 1307 29388 0 Staphylococcus capitis 1170 no rank 1 0 91994 Staphylococcus sp. AntiMn-1 species 1 1170 0 1715860 Staphylococcus sciuri 0 1296 1 species 1555 Staphylococcus nepalensis 1 species 1163 0 214473 Staphylococcus lutrae 0 155085 species 1 670 Staphylococcus pseudintermedius 783 species 1 283734 0 1 species 1342 985002 0 Staphylococcus argenteus Staphylococcus carnosus 0 1281 1039 species 1 0 1283 1446 1 species Staphylococcus haemolyticus Staphylococcus lugdunensis 28035 0 species 1 1227 Staphylococcus succinus 61015 0 species 1 1040 species 1 481 0 1294 Staphylococcus muscae Staphylococcus xylosus 1288 0 2097 species 1 Staphylococcus schleiferi 1 species 1037 0 1295 Staphylococcus hyicus 1284 0 689 species 1 46127 0 1 species 837 Staphylococcus felis 29384 0 species 1 1077 Staphylococcus kloosii Staphylococcus hominis 0 1290 species 1 1414 664 species 1 0 70258 Staphylococcus piscifermentans Staphylococcus simiae 1281 species 1 0 308354 Staphylococcus epidermidis 2369 species 1 0 1282 0 70255 1122 species 1 Staphylococcus condimenti 4338 1 species 0 1280 Staphylococcus aureus Staphylococcus equorum 0 246432 species 1 1702 Staphylococcus pasteuri 1 species 2928 0 45972 Staphylococcus simulans species 1 804 0 1286 Auricoccucs 835 2 genus 3 0 1 2005363 0 1849491 species 1 832 Auricoccus indicus Paenibacillaceae 67 25347 family 45 0 1 186822 0 1 55080 4 genus 2765 7 Brevibacillus Brevibacillus brevis 1 species 799 0 1393 525 1 species 0 54913 Brevibacillus formosus 1434 1 species 0 1465 Brevibacillus laterosporus 0 44249 1 genus 36 21248 148 Paenibacillus 1126833 0 species 1 398 Paenibacillus beijingensis 189425 0 species 1 596 Paenibacillus graminis Paenibacillus xylanexedens 1 species 495 0 528191 169760 0 1 species 302 Paenibacillus stellifer Paenibacillus swuensis 1 species 443 0 1178515 Paenibacillus yonginensis species 1 271 0 1462996 0 160799 403 1 species Paenibacillus borealis Paenibacillus terrae 456 1 species 0 159743 805 1 species 1763538 0 Paenibacillus crassostreae Paenibacillus larvae 0 1464 species 1 777 species 1 687 0 44251 Paenibacillus durus 1083 1 species 0 414771 Paenibacillus donghaensis Paenibacillus naphthalenovorans 340 species 1 0 162209 1616788 0 655 species 1 Paenibacillus bovis Paenibacillus polymyxa species 1 3012 1406 0 Paenibacillus odorifer 681 1 species 0 189426 2044880 0 species group 1 408 Paenibacillus riograndensis 408 1 species 0 483937 Paenibacillus kribbensis 433 species 1 0 172713 1 species 353 0 1870820 Paenibacillus ihbetae Paenibacillus peoriae 59893 0 species 1 710 0 61624 667 1 species Paenibacillus mucilaginosus Paenibacillus sabinae 1 species 297 0 365617 6828 no rank 13 185978 0 1536769 0 species 1 552 Paenibacillus sp. FSL P4-0081 species 1 474 0 1870819 Paenibacillus sp. BIHB4019 Paenibacillus sp. FSL H7-0737 1 species 634 0 1536775 Paenibacillus sp. FSL R7-0273 0 1536772 414 species 1 0 2069255 447 species 1 Paenibacillus sp. lzh-N1 Paenibacillus sp. IHBB 10380 0 1566358 species 1 1218 473 1 species 0 1536773 Paenibacillus sp. FSL R7-0331 Paenibacillus sp. FSL R5-0912 0 1536771 361 species 1 0 1536774 472 species 1 Paenibacillus sp. FSL H7-0357 Paenibacillus sp. FSL R5-0345 1 species 805 0 1536770 Paenibacillus sp. 32O-W 319 1 species 0 1695218 Paenibacillus sp. JDR-2 1 species 328 0 324057 0 481743 331 1 species Paenibacillus sp. Y412MC10 genus 1 375 76632 0 Thermobacillus composti species 1 375 0 377615 3 no rank 892 0 85151 55079 0 1 12 892 3 genus Aneurinibacillus 1500254 0 425 1 species Aneurinibacillus soli no rank 1 455 0 2642329 Aneurinibacillus sp. XH2 species 1 455 0 1450761 Bacillaceae 0 186817 1 181 112760 family 120 Geobacillus 5143 genus 15 220 1 0 129337 1505648 0 4 species group 1448 264 1 species 0 33938 Geobacillus thermocatenulatus Geobacillus kaustophilus 231 1 species 0 1462 743 1 species 0 33941 Geobacillus thermoleovorans 0 169283 species 1 210 Geobacillus lituanicus 1 species 448 0 33940 Geobacillus thermodenitrificans 2154 no rank 6 2642459 0 Geobacillus sp. Y412MC52 161 1 species 0 550542 1233873 0 1 species 146 Geobacillus sp. GHH01 0 581103 species 1 510 Geobacillus sp. Y4.1MC1 Geobacillus sp. Y412MC61 species 1 175 0 544556 Geobacillus sp. C56-T3 species 1 381 0 691437 Geobacillus sp. WCH70 0 471223 1 species 781 Geobacillus subterraneus 1 species 235 0 129338 Geobacillus stearothermophilus 427 1 species 0 1422 species 1 211 0 1921421 Geobacillus genomosp. 3 Halobacillus 1287 genus 3 5 0 45667 1 Halobacillus halophilus 1570 0 581 1 species 402384 0 species 1 701 Halobacillus mangrovi 400634 0 1 62 genus 5 6846 Lysinibacillus 1272 1 species 0 1145276 Lysinibacillus varians 0 1421 species 1 3176 Lysinibacillus sphaericus 1138 1 no rank 2636778 0 0 2072025 1 species 1138 Lysinibacillus sp. YS11 1 species 1198 0 28031 Lysinibacillus fusiformis 1 genus 881 0 1055323 0 33936 species 1 881 Aeribacillus pallidus 57 4411 genus 6 1 0 150247 Anoxybacillus 0 198467 species 1 783 Anoxybacillus gonensis Anoxybacillus flavithermus 1 species 1315 0 33934 Anoxybacillus amylolyticus 1 species 775 294699 0 2639704 0 no rank 2 1481 Anoxybacillus sp. B2M1 775 1 species 0 1490052 706 species 1 0 1490057 Anoxybacillus sp. B7M1 5 genus 4842 0 2675234 Bacillus clausii 0 79880 1 species 1042 Bacillus halodurans 0 86665 498 1 species 1265 species 1 0 199441 Bacillus krulwichiae Bacillus pseudofirmus 924 species 1 0 79885 Bacillus lehensis species 1 1113 0 300825 2 genus 524 2 0 1 459532 Terribacillus Terribacillus aidingensis species 1 522 0 586416 Bacillus genus 58 70207 1487 0 1 1386 Bacillus flexus 1319 1 species 0 86664 Bacillus weihaiensis species 1 1352 0 1547283 0 33932 1 species 1597 Bacillus cohnii Bacillus gibsonii species 1 197 0 79881 Bacillus smithii 580 species 1 1479 0 0 86661 32910 species group 10 2750818 0 3 no rank 2928 0 2053832 851 1 species Bacillus sp. HBCD-sjtu Bacillus sp. ABP14 811 species 1 1892404 0 0 1839798 1266 1 species Bacillus sp. FDAARGOS_235 0 1405 1 species 4016 Bacillus mycoides Bacillus cereus 11314 1 species 0 1396 Bacillus anthracis 1138 1 species 0 1392 Bacillus bombysepticus 1 species 1118 0 658666 10412 species 1 0 1428 Bacillus thuringiensis 0 580165 1038 species 1 Bacillus cytotoxicus Bacillus toyonensis species 1 946 155322 0 0 653685 7529 species group 9 0 72361 species 1 87 Bacillus vallismortis 0 1423 1 species 3043 Bacillus subtilis Bacillus licheniformis 619 species 1 0 1402 species subgroup 3 2134 0 1938374 species 1 1040 0 492670 Bacillus velezensis 1 species 208 0 659243 Bacillus siamensis 1 species 886 0 1390 Bacillus amyloliquefaciens 0 1452 746 1 species Bacillus atrophaeus Bacillus sonorensis 0 119858 403 species 1 Bacillus paralicheniformis 0 1648923 1 species 497 Bacillus aryabhattai 1 species 1084 412384 0 Bacillus infantis 324767 0 1 species 444 0 632773 352 1 species Bacillus beveridgei Bacillus safensis 1 species 1382 0 561879 Bacillus endophyticus 1667 species 1 135735 0 Bacillus glycinifermentans 1664069 0 527 species 1 species 1 837 0 1398 Bacillus coagulans 185979 0 6880 19 no rank Bacillus sp. 1s-1 0 2026248 species 1 260 98228 0 315 species 1 Bacillus sp. OxB-1 Bacillus sp. BH072 60 1 species 1570330 0 Bacillus sp. Pc3 species 1 110 0 1446792 0 1774743 species 1 237 Bacillus sp. SDLI1 627 1 species 0 756828 Bacillus sp. WP8 2049935 0 1 species 55 Bacillus sp. Lzh-5 Bacillus sp. JS 0 1127744 1 species 248 Bacillus sp. SJ-10 0 563169 1 species 126 Bacillus sp. LM 4-2 0 1628753 165 1 species Bacillus sp. MD-5 0 2009331 species 1 242 Bacillus sp. YP1 species 1 177 0 1574141 1856406 0 261 1 species Bacillus sp. H15-1 141 1 species 1409 0 Bacillus sp. (in: Bacteria) Bacillus sp. X1(2014) 0 1565991 1 species 980 1941347 0 139 species 1 Bacillus sp. 275 Bacillus sp. IHB B 7164 0 1827146 species 1 1094 species 1 384 0 1837130 Bacillus sp. FJAT-14266 Bacillus sp. 1NLA3E 0 666686 species 1 1259 0 1413 species 1 1291 Bacillus cellulosilyticus Bacillus horikoshii 0 79883 1 species 744 Bacillus megaterium 3311 species 1 0 1404 Bacillus pumilus 1408 0 species 1 2610 species 1 550 1178537 0 Bacillus xiamenensis 0 1792192 626 species group 1 0 293387 626 1 species Bacillus altitudinis 931 species 1 0 1471 Bacillus methanolicus genus 2 2335 0 2675229 Bacillus simplex 0 1478 1830 1 species Bacillus muralis 0 264697 505 species 1 0 2675230 2 genus 2438 Bacillus kochii 0 859143 1631 1 species 0 665099 807 species 1 Bacillus oceanisediminis 0 1 1906945 2 647 2 genus Parageobacillus Parageobacillus thermoglucosidasius 645 species 1 0 1426 0 182709 1 1 genus 2 2331 Oceanobacillus Oceanobacillus iheyensis 0 182710 2330 1 species 0 1 351195 1 317 2 genus Salimicrobium species 1 316 0 1230341 Salimicrobium jeotgali 1108 2 genus 2 0 29331 1 Amphibacillus 1106 1 species 0 1449 Amphibacillus xylanus 0 175304 1 474 genus 2 2 Lentibacillus Lentibacillus amyloliquefaciens 0 1472767 species 1 472 34 7270 7 genus 84406 0 1 Virgibacillus Virgibacillus halodenitrificans 0 1482 species 1 1112 2458 2 no rank 0 2620237 Virgibacillus sp. 6R 1 species 1379 0 1911587 403957 0 species 1 1079 Virgibacillus sp. SK37 Virgibacillus necropolis 0 163877 1 species 1245 0 1473 1377 species 1 Virgibacillus pantothenticus Virgibacillus phasianinus 0 2017483 species 1 1044 Fictibacillus 1329200 0 1 1 genus 3 1518 Fictibacillus arsenicus 255247 0 761 species 1 Fictibacillus phosphorivorans 756 1 species 0 1221500 0 1 186820 5 7531 9 family Listeriaceae 1 0 1637 6 genus 6608 86 Listeria Listeria ivanovii 0 1638 1399 species 1 Listeria seeligeri 1 species 808 0 1640 Listeria welshimeri 0 1643 1 species 883 0 1639 2492 1 species Listeria monocytogenes 0 1642 940 species 1 Listeria innocua 3 genus 2 918 0 2755 1 Brochothrix 0 2756 915 1 species Brochothrix thermosphacta 2593 9 no rank 539002 0 no rank 7 1676 0 539742 Exiguobacterium 33986 0 1 7 genus 1676 34 256 species 1 0 132920 Exiguobacterium antarcticum Exiguobacterium sibiricum species 1 270 0 332410 0 2644629 1116 no rank 4 0 360911 225 species 1 Exiguobacterium sp. AT1b 260 1 species 0 1399115 Exiguobacterium sp. MH3 0 1224749 species 1 320 Exiguobacterium sp. ZWU0009 1849031 0 species 1 311 Exiguobacterium sp. U13-1 no rank 2 917 539738 0 Gemella 1378 0 1 1 917 2 genus 0 2624949 916 1 no rank 1 species 916 0 1785995 Gemella sp. oral taxon 928 Planococcaceae 186818 0 1 family 27 15550 43 Rummeliibacillus 3 genus 2 874 648802 0 1 Rummeliibacillus stabekisii 871 species 1 0 241244 5 genus 3497 13 1569 0 1 Sporosarcina Sporosarcina ureae 1845 species 1 1571 0 695 no rank 2 0 2647733 Sporosarcina sp. P37 1930546 0 species 1 338 Sporosarcina sp. P33 1930764 0 357 species 1 Sporosarcina psychrophila species 1 944 0 1476 Solibacillus 26 2007 genus 3 648800 0 1 species 1 1003 0 76853 Solibacillus silvestris 1 no rank 978 0 2637870 Solibacillus sp. R5-41 species 1 978 2048654 0 Planococcus 7444 12 genus 76 0 1 1372 0 161360 574 species 1 Planococcus antarcticus species 1 198 1038856 0 Planococcus plakortidis Planococcus faecalis 0 1598147 1 species 824 Planococcus kocurii 1374 0 1 species 811 1215089 0 1 species 937 Planococcus halocryophilus 2 no rank 1169 2662419 0 0 1526927 870 species 1 Planococcus sp. PAMC 21323 Planococcus sp. MB-3u-03 0 2058136 299 species 1 842 1 species 0 414778 Planococcus donghaensis 0 1302659 1035 1 species Planococcus sp. L10.15 Planococcus rifietoensis 200991 0 279 species 1 Planococcus maritimus 192421 0 species 1 699 Jeotgalibacillus 5 2 genus 735 0 157226 1 Jeotgalibacillus malaysiensis 0 1508404 species 1 730 1 0 1649 950 2 genus 5 Kurthia 2644826 0 1 no rank 945 species 1 945 1750719 0 Kurthia sp. 11kri321 1785 9 family 12 1 0 186823 Alicyclobacillaceae Alicyclobacillus 0 29330 1 2 2 genus 434 Alicyclobacillus acidocaldarius 432 species 1 0 405212 Tumebacillus 4 genus 3 674 1 0 432330 Tumebacillus algifaecis 0 1214604 species 1 228 1903704 0 442 1 species Tumebacillus avium Kyrpidia 1129704 0 1 genus 3 665 2 0 2055160 351 species 1 Kyrpidia sp. EA-1 Kyrpidia tusciae 0 33943 species 1 312 Thermoactinomycetaceae 186824 0 1 1 240 4 family 0 292635 1 genus 1 Laceyella Novibacillus 1 238 genus 2 1677050 0 1 Novibacillus thermophilus 1471761 0 237 1 species 362 1 family 186821 0 362 no rank 1 663587 0 [Bacillus] selenitireducens 362 1 species 85683 0 Negativicutes class 26 8269 19 0 909932 1 0 1843488 order 3 549 Acidaminococcaceae 549 3 family 5 0 1 909930 904 0 544 2 genus Acidaminococcus intestini 0 187327 1 species 236 0 905 308 species 1 Acidaminococcus fermentans Selenomonadales 0 909929 1 31 13 order 5217 Sporomusaceae 0 1 1843490 9 2642 4 family genus 3 2633 17 1 0 365348 Pelosinus 1208 species 1 0 365349 Pelosinus fermentans no rank 1 1408 2629460 0 Pelosinus sp. UFO1 1408 1 species 484770 0 14 8 family 2544 0 1843491 1 Selenomonadaceae 0 970 1 25 1330 genus 6 Selenomonas 0 2637378 3 no rank 598 712538 0 species 1 225 Selenomonas sp. oral taxon 478 Selenomonas sp. oral taxon 920 1 species 168 1884263 0 Selenomonas sp. oral taxon 136 713030 0 1 species 205 species 1 384 0 971 Selenomonas ruminantium Selenomonas sputigena species 1 323 0 69823 0 158846 1200 1 genus species 1 1200 0 158847 Megamonas hypermegale 1 0 1843489 2484 9 order 21 Veillonellales Veillonellaceae 1 0 31977 27 2463 family 8 1076 3 genus 6 1 0 29465 Veillonella 0 248315 1 species 288 Veillonella rodentium 29466 0 782 species 1 Veillonella parvula 906 0 329 1 genus 907 0 329 species 1 Megasphaera elsdenii Dialister 2 genus 821 1 39948 0 1 Dialister pneumosintes 1 species 820 0 39950 1 genus 210 909928 0 210 species 1 0 1702287 Negativicoccus massiliensis 237 204224 class 211 186801 0 1 Clostridia 35 order 34 25329 0 68295 1 Thermoanaerobacterales 37 family 16 12454 0 1 186814 Thermoanaerobacteraceae 0 1 1754 10283 9 genus 453 Thermoanaerobacter Thermoanaerobacter pseudethanolicus 1159 1 species 0 496866 Thermoanaerobacter kivui 1187 1 species 0 2325 583357 0 1145 species 1 Thermoanaerobacter mathranii Thermoanaerobacter italicus 1218 species 1 108150 0 29323 0 1158 1 species Thermoanaerobacter brockii Thermoanaerobacter wiegelii 0 46354 1 species 1290 2 no rank 2673 2636821 0 Thermoanaerobacter sp. X514 0 399726 species 1 1329 Thermoanaerobacter sp. X513 0 573062 1344 species 1 269 1 genus 140458 0 0 85874 species 1 269 Thermacetogenium phaeum 1 genus 538 129957 0 0 129958 species 1 538 Carboxydothermus hydrogenoformans 0 42857 461 3 no rank Moorella 0 1 44260 3 297 2 genus Moorella thermoacetica 0 1525 294 1 species 1 genus 164 42837 0 Ammonifex degensii 0 42838 164 species 1 0 249529 1 genus 866 911092 0 866 1 species Caldanaerobacter subterraneus family 2 1302 2 1 0 227387 Thermodesulfobiaceae 1300 1 genus 0 227388 0 184064 1 species 1300 Thermodesulfobium narugense 0 543372 291 family 2 Mahella 291 genus 2 1 0 252965 1 0 252966 290 species 1 Mahella australiensis 23 family 13 11247 0 543371 1 Thermoanaerobacterales Family III. Incertae Sedis 0 1 44000 180 8258 genus 9 Caldicellulosiruptor 1 species 913 0 52765 Caldicellulosiruptor kristjanssonii Caldicellulosiruptor obsidiansis 1016 species 1 717609 0 Caldicellulosiruptor kronotskyensis 1168 1 species 0 413889 Caldicellulosiruptor hydrothermalis 982 1 species 0 413888 Caldicellulosiruptor owensensis 1001 1 species 0 55205 Caldicellulosiruptor bescii 0 31899 1 species 996 Caldicellulosiruptor lactoaceticus 0 52766 900 1 species 0 44001 species 1 1102 Caldicellulosiruptor saccharolyticus Thermoanaerobacterium 3 genus 2966 7 0 28895 1 1044 1 species 0 29329 Thermoanaerobacterium xylanolyticum Thermoanaerobacterium thermosaccharolyticum 1915 1 species 0 1517 0 186802 1 417 167472 157 order Clostridiales 0 538999 1835 no rank 9 Clostridiales Family XVII. Incertae Sedis 3 family 3 361 0 539000 1 1 0 73918 358 genus 2 6 Thermaerobacter 73919 0 352 1 species Thermaerobacter marianensis 241 2 genus 2 0 1 1392389 Intestinimonas 1 species 239 1297617 0 Intestinimonas butyriciproducens Clostridiales Family XIII. Incertae Sedis 1 0 543314 3 family 996 1 447 1 genus 86331 0 Mogibacterium diversum 447 species 1 0 114527 143393 0 548 species 1 [Eubacterium] sulci 2717089 0 1 genus 237 Mordavella sp. Marseille-P3756 0 2086584 237 1 species Peptococcaceae 1 0 186807 family 28 10142 33 Desulfitobacterium 18 1993 genus 5 36853 0 1 Desulfitobacterium hafniense 0 49338 485 1 species 0 233055 561 1 species Desulfitobacterium dichloroeliminans 419 1 species 0 36854 Desulfitobacterium dehalogenans Desulfitobacterium metallireducens 0 142877 1 species 510 Thermincola 0 1 278993 353 genus 2 1 0 863643 1 species 352 Thermincola potens Desulfotomaculum 1880 5 genus 24 1562 0 1 400 species 1 0 1833852 Desulfotomaculum ferrireducens 1564 0 species 1 444 Desulfotomaculum ruminis Desulfotomaculum nigrificans species 1 390 0 1565 Desulfotomaculum reducens 0 59610 1 species 622 4 genus 4 2230 79206 0 1 Desulfosporosinus Desulfosporosinus acidiphilus 674 species 1 0 885581 Desulfosporosinus meridiei 0 79209 species 1 753 0 1563 799 1 species Desulfosporosinus orientis 2282742 0 586 1 genus species 1 586 0 58138 Desulfotomaculum acetoxidans 0 471826 1 1 2 genus 296 Candidatus Desulforudis Candidatus Desulforudis audaxviator 0 471827 295 1 species Dehalobacter 7 genus 4 1119 0 56112 1 Dehalobacter restrictus 0 55583 species 1 354 2635733 0 758 2 no rank 0 1147129 species 1 369 Dehalobacter sp. DCA 0 1131462 1 species 389 Dehalobacter sp. CF 51514 0 1 genus 715 0 51515 715 species 1 Dehalobacterium formicoaceticum 2282740 0 genus 1 588 588 1 species 0 102134 Desulfotomaculum gibsoniae Syntrophobotulus genus 2 349 3 51196 0 1 0 51197 346 1 species Syntrophobotulus glycolicus 41 family 12 2178 0 541000 1 Ruminococcaceae Faecalibacterium 0 216851 1 305 2 genus 5 0 853 300 1 species Faecalibacterium prausnitzii Herbivorax 0 1890281 2 1 genus 1 no rank 297 0 552397 [Clostridium] cellulosi 0 29343 297 species 1 6 299 genus 2 946234 0 1 Flavonifractor Flavonifractor plautii 0 292800 293 1 species 4 3 genus 718 0 1 1263 Ruminococcus Ruminococcus bicirculans 413 1 species 1160721 0 1264 0 species 1 301 Ruminococcus albus 330 1 genus 0 253238 330 1 species 253239 0 Ethanoligenens harbinense 2305133 0 186 1 no rank Ruminococcaceae bacterium CPB6 1 species 186 1572656 0 family 10 6250 2304686 0 41 954 2 genus 0 1508657 1 Ruminiclostridium [Clostridium] cellulolyticum species 1 913 1521 0 0 2304692 genus 3 2983 Herbivorax saccincola 1127 species 1 0 1677857 [Clostridium] clariflavum 0 288965 1137 1 species 0 1515 719 species 1 Ruminiclostridium thermocellum 1 genus 821 0 236752 0 236753 species 1 821 Fastidiosipila sanguinis 2304691 0 1 genus 384 [Clostridium] stercorarium 1510 0 species 1 384 1637257 0 227 genus 1 0 884684 species 1 227 Mageeibacillus indolicus 1 no rank 196 2305130 0 Ruminiclostridium sp. KB18 196 species 1 1834198 0 0 2304693 685 genus 1 [Clostridium] thermosuccinogenes 0 84032 685 1 species 0 186806 1 8 1944 family 5 Eubacteriaceae Acetobacterium 0 33951 1 844 genus 2 1 Acetobacterium woodii 33952 0 species 1 843 Eubacterium 13 genus 2 1092 0 1730 1 1079 species 1 1736 0 Eubacterium limosum Lachnospiraceae 13301 25 family 36 0 1 186803 372 genus 1 0 2719313 372 1 species 208479 0 [Clostridium] bolteae Anaerotignum 0 2039240 1 4 594 2 genus Anaerotignum propionicum 1 species 590 0 28446 0 572511 genus 2 961 0 1322 603 1 species Blautia hansenii 1 no rank 358 0 2648079 0 1796616 358 1 species Blautia sp. YL58 genus 1 1194 2569097 0 [Eubacterium] hallii 1194 species 1 39488 0 0 186928 no rank 2 806 [Eubacterium] rectale species 1 477 0 39491 0 712991 329 species 1 Lachnospiraceae bacterium oral taxon 500 1050 genus 1 28050 0 1050 species 1 39485 0 [Eubacterium] eligens genus 2 806 2 1663717 0 1 Herbinix 0 1679721 1 species 804 Herbinix luporum 0 1 1506553 11 1935 genus 4 Lachnoclostridium 283 species 1 1871021 0 Lachnoclostridium phocaeense species 1 1261 0 66219 Lachnoclostridium phytofermentans 0 2608895 no rank 1 380 Lachnoclostridium sp. YL32 1 species 380 0 1834196 0 1 207244 2 826 genus 2 Anaerostipes species 1 824 0 649756 Anaerostipes hadrus Butyrivibrio 0 1 830 2 3 genus 1703 753 species 1 185008 0 Butyrivibrio hungatei species 1 948 0 43305 Butyrivibrio proteoclasticus 1 genus 252 841 0 252 1 species 301301 0 Roseburia hominis 0 2719231 1 genus 447 [Clostridium] saccharolyticum 0 84030 1 species 447 Cellulosilyticum 2319 2 genus 8 698776 0 1 Cellulosilyticum lentocellum 0 29360 2311 1 species 12426 family 10 19 0 1 186804 Peptostreptococcaceae 397 1 genus 0 1481960 Peptoclostridium acidaminophilum 397 species 1 0 1731 1411023 0 981 no rank 1 Peptostreptococcaceae bacterium oral taxon 929 0 2081703 981 species 1 16 5809 genus 2 0 1870884 1 Clostridioides 1 species 5793 0 1496 Clostridioides difficile Filifactor 1 0 44259 724 2 genus 1 143361 0 723 species 1 Filifactor alocis 0 186831 1534 genus 1 Acetoanaerobium sticklandii 1534 1 species 0 1511 Paeniclostridium 1 0 1849828 1 2 genus 2962 2961 1 species 0 1505 Paeniclostridium sordellii Oscillospiraceae 1 0 216572 1 3 family 291 1 0 459786 290 2 genus 1 Oscillibacter 0 351091 289 1 species Oscillibacter valericigenes Syntrophomonadaceae 68298 0 1 family 5 648 12 0 1 129001 187 2 genus 3 Syntrophothermus species 1 184 86170 0 Syntrophothermus lipocalidus genus 2 449 4 0 862 1 Syntrophomonas 445 1 species 863 0 Syntrophomonas wolfei family 3 428 3 1 0 543349 Symbiobacteriaceae 1 0 2733 1 genus 2 425 Symbiobacterium 2734 0 424 species 1 Symbiobacterium thermophilum Heliobacteriaceae 0 31984 1 2 family 3 296 Heliobacterium 294 2 genus 2 2697 0 1 species 1 292 0 35701 Heliobacterium modesticaldum 990719 0 family 2 198 0 990721 1 198 2 genus 6 Christensenella Christensenella massiliensis 192 species 1 0 1805714 91 117118 41 family 1 0 31979 Clostridiaceae Geosporobacter 0 390805 1 1101 2 genus 1 Geosporobacter ferrireducens species 1 1100 0 1424294 Alkaliphilus genus 3 2274 6 114627 0 1 Alkaliphilus metalliredigens 1380 1 species 0 208226 Alkaliphilus oremlandii 461876 0 species 1 888 Candidatus Arthromitus 0 49082 1 53 4996 4 genus no rank 3 4943 0 2638829 Candidatus Arthromitus sp. SFB-mouse-NL 0 1508644 species 1 1638 Candidatus Arthromitus sp. SFB-mouse species 1 1632 49118 0 Candidatus Arthromitus sp. SFB-rat-Yit 0 1041504 1673 1 species 0 1485 1 108651 genus 30 583 Clostridium 2314 1 species 0 1494 Clostridium cochlearium Clostridium ljungdahlii 0 1538 1 species 2310 Clostridium perfringens 1502 0 species 1 5561 238834 0 1 species 2489 Clostridium estertheticum Clostridium saccharoperbutylacetonicum 0 36745 4611 1 species 1232 no rank 2 2614128 0 Clostridium sp. BNL1100 755731 0 species 1 1050 Clostridium sp. SY8519 1 species 182 0 1042156 3323 species 1 0 1548 Clostridium scatologenes Clostridium aceticum 84022 0 1532 1 species Clostridium autoethanogenum 0 84023 2140 1 species 2893 1 species 0 394958 Clostridium taeniosporum 1520 0 1 species 5896 Clostridium beijerinckii Clostridium acetobutylicum 2679 1 species 0 1488 Clostridium baratii 0 1561 4715 species 1 Clostridium tyrobutyricum 1519 0 2028 1 species Clostridium kluyveri 1534 0 species 1 3040 species 1 3069 0 1513 Clostridium tetani Clostridium botulinum 0 1491 22844 1 species Clostridium chauvoei 0 46867 1 species 2573 3139 1 species 0 1216932 Clostridium bornimense 217159 0 species 1 3347 Clostridium carboxidivorans 0 1509 2617 1 species Clostridium sporogenes Clostridium butyricum 4281 1 species 0 1492 0 1497 species 1 1626 Clostridium formicaceticum species 1 2425 0 1542 Clostridium novyi 5670 species 1 0 1501 Clostridium pasteurianum Clostridium argentinense species 1 2916 0 29341 1 species 2475 0 1493 Clostridium cellulovorans 0 169679 4323 species 1 Clostridium saccharobutylicum genus 1 5 1981033 0 Mordavella 2770089 0 1041 order 4 2 family 763 0 2770092 Tepidanaerobacter 1 0 499228 genus 2 763 2 0 499229 1 species 761 Tepidanaerobacter acetatoxydans 2770093 0 2 family 278 Thermosediminibacter 0 1 291988 278 genus 2 3 Thermosediminibacter oceani 275 species 1 0 291990 0 53433 1 32 12 order 9020 Halanaerobiales Halanaerobiaceae 0 972 1 6061 family 6 9 Halothermothrix genus 2 978 44 0 1 32636 Halothermothrix orenii 1 species 934 0 31909 1 0 2330 24 3 genus 5074 Halanaerobium Halanaerobium praevalens 0 2331 2657 species 1 2393 1 species 0 656519 Halanaerobium hydrogeniformans Halobacteroidaceae 0 1 53434 14 2927 family 5 4 genus 2 1008 28186 0 1 Acetohalobium Acetohalobium arabaticum 28187 0 1 species 1004 0 1 42417 2 genus 1905 6 Halobacteroides Halobacteroides halobius 0 42422 species 1 1899 Natranaerobiales 9 3 order 1125 1 0 485256 0 485255 2 family 1116 Natranaerobius 3 1116 genus 2 375928 0 1 Natranaerobius thermophilus 1113 species 1 0 375929 Tissierellia 18 class 8665 38 0 1737404 1 1 0 1737405 24 7841 15 order Tissierellales 5885 family 11 31 0 1570339 1 Peptoniphilaceae Parvimonas 1 0 543311 1 1809 genus 2 1808 1 species 33033 0 Parvimonas micra 1 0 165779 3 genus 1603 2 Anaerococcus 33034 0 species 1 864 Anaerococcus prevotii Anaerococcus mediterraneensis species 1 737 0 1870984 0 1161127 genus 1 196 196 1 species 0 1852373 Murdochiella vaginalis 4 genus 2 1279 1 0 150022 Finegoldia Finegoldia magna 1275 1 species 0 1260 0 162289 1 5 967 2 genus Peptoniphilus 962 1 no rank 0 2637196 Peptoniphilus sp. ING2-D1G species 1 962 0 1912856 Gottschalkiaceae 1932 family 3 8 0 2042895 1 0 1 1505664 6 1924 genus 2 Gottschalkia Gottschalkia acidurici 1556 0 1918 1 species 786 2 no rank 0 1737407 genus 2 786 7 1582879 0 1 Ezakiella Ezakiella massiliensis 779 species 1 1852374 0 0 1798711 8786762 clade 158 Cyanobacteria 8786762 158 phylum 38 1117 0 1 1301283 0 47 subclass 35245 Chroococcales 24486 26 order 64 1 0 1118 0 1 1890449 3422 family 4 31 Microcystaceae Microcystis 1 0 1125 3391 3 genus 23 no rank 1 1046 0 2643300 Microcystis sp. MC19 0 1967666 species 1 1046 Microcystis aeruginosa 2322 1 species 0 1126 0 1 1890452 2266 3 family 8 Cyanobacteriaceae Cyanobacterium 8 genus 2 2258 102234 0 1 2250 1 species 0 379064 Cyanobacterium aponinum Chroococcaceae 0 1890464 1 9386 8 family 58 Gloeocapsa 0 1 102231 3 genus 2 1199 0 2623012 1196 no rank 1 Gloeocapsa sp. PCC 7428 species 1 1196 0 1173026 26 4760 3 genus 669357 0 1 Geminocystis 2625037 0 4734 no rank 2 species 1 2443 1615909 0 Geminocystis sp. NIES-3708 2291 species 1 0 1617448 Geminocystis sp. NIES-3709 Chondrocystis 268175 0 1 2 genus 3369 12 0 2648896 1 no rank 3357 Chondrocystis sp. NIES-4102 species 1 3357 2005460 0 Aphanothecaceae 21 family 10 9348 1890450 0 1 263510 0 genus 1 1432 1432 species 1 2546360 0 Cyanothece sp. ATCC 51142 0 43989 1432 strain 1 92682 0 909 no rank 2 Halothece 76023 0 1 genus 2 909 4 no rank 1 905 2632878 0 Halothece sp. PCC 7418 905 species 1 0 65093 2 2 genus 1858 1453359 0 1 Candidatus Atelocyanobacterium species 1 1856 713887 0 Candidatus Atelocyanobacterium thalassa 2546365 0 2 genus 2018 species 2 2018 2546366 0 Cyanothece sp. PCC 8802 0 395962 1 strain 1009 1009 1 strain 41431 0 Cyanothece sp. PCC 8801 3110 genus 2 28070 0 2546359 0 1632 species 1 1 strain 1632 497965 0 Cyanothece sp. PCC 7822 2546356 0 species 1 1478 1 strain 1478 0 65393 Cyanothece sp. PCC 7424 Oscillatoriales 108 10759 order 21 0 1 1150 Cyanothecaceae 486 family 3 29 1 0 1892249 Cyanothece 54 457 genus 2 43988 0 1 1 no rank 403 0 2649277 Cyanothece sp. PCC 7425 0 395961 species 1 403 family 3 416 19 1892251 0 1 Coleofasciculaceae 9 397 genus 2 63132 0 1 Geitlerinema 1 no rank 388 2648775 0 Geitlerinema sp. PCC 7407 1173025 0 1 species 388 0 1 1892252 18 4067 family 5 Microcoleaceae Microcoleus 2 genus 771 9 1 0 44471 2642155 0 1 no rank 762 Microcoleus sp. PCC 7113 species 1 762 0 1173027 Trichodesmium 10 2 genus 3278 1 0 1205 1206 0 3268 species 1 Trichodesmium erythraeum 0 1 1892255 1449 3 family 8 Gomontiellaceae 3 genus 2 1441 0 241421 1 Crinalium Crinalium epipsammum 241425 0 1438 species 1 0 1 1892254 52 4233 family 6 Oscillatoriaceae Oscillatoria 0 1158 1 23 genus 3 2116 1 species 990 482564 0 Oscillatoria nigro-viridis 0 118323 1103 1 species Oscillatoria acuminata 1 0 1155738 2065 2 genus 8 Moorea 1 species 2057 0 1155739 Moorea producens Nostocales 1161 0 1 103 39600 order 34 Nostocaceae 88 21659 family 18 0 1162 1 55 4 genus 5545 1 0 1163 Anabaena 2057 1 species 0 1165 Anabaena cylindrica no rank 2 3433 0 2619674 0 1647413 species 1 1811 Anabaena sp. WA102 Anabaena sp. 90 0 46234 species 1 1622 0 264688 1 2838 genus 3 5 Trichormus 0 1164 species 1 1437 Trichormus azollae Trichormus variabilis 0 264691 species 1 1396 Nostoc 1 0 1177 10 genus 13188 146 7 no rank 10313 0 2593658 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 1261031 1397 1 species Nostoc sp. PCC 7120 1 species 1208 0 103690 1 species 1688 0 28072 Nostoc sp. PCC 7524 Nostoc sp. NIES-3756 species 1 1799 1751286 0 Nostoc sp. PCC 7107 0 317936 species 1 1494 Nostoc sp. CENA543 0 1869241 1450 1 species 0 1618022 1277 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1306274 1335 species 1 Nostoc flagelliforme 0 272131 species 1 1394 Nostoc punctiforme family 3 2062 12 0 1 1892263 Hapalosiphonaceae 1190 0 1 16 2050 genus 2 Fischerella 0 494603 no rank 1 2034 Fischerella sp. NIES-3754 0 1752063 1 species 2034 11469 family 8 0 2661849 1 0 1186 11469 8 genus 115 Calothrix 9876 6 no rank 2619626 0 0 99598 species 1 1260 Calothrix sp. PCC 7507 Calothrix sp. NIES-2098 1 species 1741 1954171 0 0 1337936 1313 species 1 Calothrix sp. 336/3 Calothrix sp. NIES-4101 1843 1 species 0 2005461 Calothrix sp. NIES-4071 2472 1 species 0 2005469 Calothrix sp. NIES-3974 0 2005462 species 1 1247 Calothrix parietina 0 32054 species 1 1478 0 1185 1 2974 3 family 43 Rivulariaceae genus 2 2931 5 1 0 373984 Rivularia no rank 1 2926 2676603 0 Rivularia sp. PCC 7116 1 species 2926 373994 0 1333 no rank 1 0 1219117 Nostocales cyanobacterium HT-58-2 1 species 1333 0 1940762 Synechococcales 1890424 0 1 208 57 order 8701712 Acaryochloridaceae 1890429 0 1 family 3 1041 5 1 0 155977 1036 genus 2 6 Acaryochloris 155978 0 1 species 1030 Acaryochloris marina 0 1 1890426 293257 family 32 67 Synechococcaceae 891 1 genus 0 13034 1 species 891 292566 0 Dactylococcopsis salina 382 1 genus 0 146785 0 146786 382 species 1 Thermosynechococcus elongatus Cyanobium 113 3 genus 5319 0 1 167375 Cyanobium gracile 0 59930 1 species 2679 2527 1 no rank 0 2627006 2527 1 species 1851505 0 Cyanobium sp. NIES-981 Synechococcus 1 0 1129 286598 26 genus 1306 284445 no rank 23 0 2626047 366 1 species 0 32049 Synechococcus sp. PCC 7002 Synechococcus sp. CC9311 0 64471 1 species 1621 Synechococcus sp. PCC 7502 0 1173263 1 species 1261 1 species 90555 0 166314 Synechococcus sp. WH 8109 Synechococcus sp. SynAce01 1 species 1693 0 1916956 0 585425 29000 species 1 Synechococcus sp. KORDI-52 Synechococcus sp. JA-2-3B'a(2-13) 1 species 349 321332 0 Synechococcus sp. WH 7803 4698 species 1 0 32051 Synechococcus sp. KORDI-100 0 1280380 species 1 23615 Synechococcus sp. CC9605 102471 1 species 110662 0 0 1350461 1 species 485 Synechococcus sp. UTEX 2973 374981 0 species 1 417 Synechococcus sp. PCC 7003 Synechococcus sp. KORDI-49 0 585423 species 1 4911 species 1 1602 0 316279 Synechococcus sp. CC9902 Synechococcus sp. WH 8102 84588 0 species 1 8407 0 1827144 538 1 species Synechococcus sp. NIES-970 0 29410 8343 1 species Synechococcus sp. WH 8103 0 321327 283 species 1 Synechococcus sp. JA-3-3Ab 367 species 1 0 195498 Synechococcus sp. PCC 7117 Synechococcus sp. PCC 73109 374982 0 species 1 434 species 1 311 195253 0 Synechococcus sp. PCC 6312 Synechococcus sp. PCC 8807 1 species 328 195248 0 0 316278 1 species 2390 Synechococcus sp. RCC307 323 1 species 0 33070 Synechococcus lividus 1 species 524 0 32046 Synechococcus elongatus Prochloraceae 1 0 1213 30 8400823 family 5 genus 4 8400793 380 1 0 1218 Prochlorococcus 1219 0 1 species 6398675 Prochlorococcus marinus 2001738 2 no rank 2627481 0 Prochlorococcus sp. MIT 0801 0 1501269 species 1 11428 0 1501268 species 1 1990310 Prochlorococcus sp. MIT 0604 2303730 0 2 family 597 170610 0 1 5 597 2 genus Halomicronema Halomicronema hongdechloris 0 1209493 species 1 592 0 1890436 1 family 3 1055 4 Pseudanabaenaceae Pseudanabaena 1 0 1152 11 1051 genus 2 no rank 1 1040 2593292 0 Pseudanabaena sp. PCC 7367 1040 1 species 0 82654 25 6 family 2801 0 1890438 1 Leptolyngbyaceae 27 genus 5 2776 0 1 47251 Leptolyngbya 1 species 742 1184 0 Leptolyngbya boryana 2007 no rank 3 0 2650499 0 1080068 428 species 1 Leptolyngbya sp. O-77 111781 0 1 species 1110 Leptolyngbya sp. PCC 7376 1752064 0 469 species 1 Leptolyngbya sp. NIES-3755 1930 family 5 3 1 0 1890428 Merismopediaceae 1 0 1142 4 genus 1927 52 Synechocystis no rank 3 1875 2640012 0 Synechocystis sp. IPPAS B-1465 1 species 599 2116702 0 Synechocystis sp. PCC 6803 species 1 599 0 1148 Synechocystis sp. PCC 6714 677 species 1 0 1147 1532 4 order 2 1 0 1890505 Chroococcidiopsidales 18 family 3 1530 0 1 1890528 Chroococcidiopsidaceae 54298 0 1 genus 2 1512 5 Chroococcidiopsis Chroococcidiopsis thermalis 1 species 1507 0 54299 Pleurocapsales 0 52604 1 8 order 6567 9 Dermocarpellaceae 5629 4 family 18 1890498 0 1 23 5611 genus 3 102115 0 1 Stanieria Stanieria cyanosphaera 102116 0 2697 1 species 2891 1 no rank 0 2642663 1 species 2891 0 1807358 Stanieria sp. NIES-3757 1890500 0 1 11 family 3 929 Hyellaceae 5 2 genus 918 44474 0 1 Pleurocapsa Pleurocapsa minor 1 species 913 0 54308 1 0 307596 6 class 917 1 Gloeobacteria 11 916 order 5 0 307595 1 Gloeobacterales Gloeobacteraceae 905 family 4 7 1 0 1890422 genus 3 898 3 1 0 33071 Gloeobacter Gloeobacter violaceus 471 1 species 0 33072 424 1 species 0 1416614 Gloeobacter kilaueensis 1 no rank 1151 0 1983111 cyanobacterium endosymbiont of Epithemia turgida 0 718217 species 1 1151 phylum 5 404 0 67819 Fimbriimonadia 19 5 class 404 1663419 0 1 1663425 0 1 4 order 385 4 Fimbriimonadales Fimbriimonadaceae 1663426 0 1 1 family 3 381 Fimbriimonas 380 2 genus 7 0 1005038 1 1005039 0 373 1 species Fimbriimonas ginsengisoli Tenericutes 15 102 phylum 73575 0 544448 1 no rank 2 1205 0 2799557 Candidatus Izimaplasma 0 1912503 1 4 1205 genus 2 0 2624196 1201 1 no rank species 1 1201 1541959 0 Candidatus Izimaplasma sp. HR1 713063 0 no rank 2 2401 1 species 1180 1911683 0 Tenericutes bacterium MZ-XQ Tenericutes bacterium MO-XQ 0 1911684 1221 species 1 Mollicutes 159 69954 97 class 31969 0 1 0 1 2085 115 31728 order 44 Mycoplasmatales Mycoplasmataceae 31613 43 family 83 0 2092 1 0 2767358 12 genus 9480 Mycoplasma pulmonis 0 2107 804 1 species Mycoplasma bovirhinis 29553 0 species 1 650 Mycoplasma cynos 0 171284 species 1 804 Mycoplasma bovis 28903 0 1612 species 1 0 2115 796 1 species Mycoplasma fermentans species 1 954 0 2110 Mycoplasma agalactiae species 1 806 2094 0 Mycoplasma arginini 2109 0 species 1 533 Mycoplasma synoviae Mycoplasma canis species 1 926 0 29555 Mycoplasma californicum 412 species 1 0 2113 Mycoplasma bovigenitalium 1 species 589 0 2112 Mycoplasma pullorum 0 48003 1 species 594 1 0 2093 20481 genus 27 238 Mycoplasma 0 45362 species 1 673 Mycoplasma bovoculi Mycoplasma putrefaciens 2123 0 886 species 1 Mycoplasma canadense 761 species 1 0 29554 Mycoplasma haemocanis 136241 0 342 1 species 1 species 1072 0 28227 Mycoplasma penetrans species 1 510 0 2128 Mycoplasma flocculare Mycoplasma mobile species 1 1122 0 2118 Mycoplasma wenyonii 0 65123 species 1 191 1 species 873 0 2099 Mycoplasma hyopneumoniae 456 1 species 0 2097 Mycoplasma genitalium 1 species 776 0 50052 Mycoplasma crocodyli Mycoplasma pneumoniae 140 species 1 0 2104 984991 0 1 species 461 Mycoplasma parvum Mycoplasma arthritidis 348 species 1 0 2111 Mycoplasma ovis 0 171632 species 1 227 0 2098 species 1 1126 Mycoplasma hominis 0 51365 1131 1 species Mycoplasma yeatsii Mycoplasma hyorhinis 915 1 species 0 2100 656088 0 5312 3 species group 2576 species 1 2102 0 Mycoplasma mycoides 2095 0 species 1 1475 Mycoplasma capricolum Mycoplasma leachii 0 2105 1261 species 1 0 29501 690 1 species Mycoplasma haemofelis 0 86660 1 species 568 Mycoplasma dispar Mycoplasma suis 0 57372 species 1 361 624 species 1 0 2096 Mycoplasma gallisepticum 0 2683645 1 no rank 678 Mycoplasma sp. (ex Biomphalaria glabrata) 678 species 1 0 1749074 6 3 genus 1569 0 2129 1 Ureaplasma Ureaplasma urealyticum species 1 750 0 2130 Ureaplasma parvum 134821 0 813 species 1 0 186328 1 69 39 order 30819 Entomoplasmatales 33 9390 family 14 0 33925 1 Entomoplasmataceae Mesoplasma 0 1 46239 132 8 genus 6701 Mesoplasma lactucae 1 species 567 0 138853 species 1 707 0 225999 Mesoplasma syrphidae Mesoplasma chauliocola 0 216427 905 1 species 0 219745 species 1 793 Mesoplasma tabanidae 1735 1 species 0 2151 Mesoplasma florum Mesoplasma entomophilum 907 1 species 0 2149 955 species 1 0 324078 Mesoplasma coleopterae Entomoplasma 0 1 46238 26 5 genus 2656 Entomoplasma luminosum species 1 620 0 214888 Entomoplasma somnilux 0 215578 1 species 816 908 species 1 81459 0 Entomoplasma melaleucae 286 1 species 74700 0 Entomoplasma freundtii Spiroplasmataceae 0 2131 1 family 24 21360 58 21302 23 genus 278 2132 0 1 Spiroplasma Spiroplasma mirum 0 2144 1 species 551 Spiroplasma syrphidicola 0 216945 species 1 747 Spiroplasma eriocheiris species 1 634 315358 0 Spiroplasma corruscae 0 216934 species 1 1108 Spiroplasma turonicum 0 216946 species 1 1258 Spiroplasma taiwanense species 1 1404 2145 0 0 2137 species 1 723 Spiroplasma apis Spiroplasma citri 1 species 935 0 2133 Spiroplasma cantharicola 0 362837 1 species 1435 Spiroplasma sabaudiense 0 216944 731 1 species 1 species 1055 0 216938 Spiroplasma helicoides Spiroplasma atrichopogonis 571 1 species 1114980 0 2 no rank 1440 2637901 0 1 species 720 0 1914410 Spiroplasma sp. NBRC 100390 Spiroplasma sp. TU-14 720 species 1 0 1898044 1355 1 species 0 216935 Spiroplasma culicicola Spiroplasma clarkii 0 2139 1 species 845 Spiroplasma litorale species 1 1276 0 216942 Spiroplasma diminutum 1221 1 species 0 216936 Spiroplasma floricola 1300 species 1 0 216937 Spiroplasma monobiae 0 2136 species 1 841 646 1 species 0 216933 Spiroplasma chrysopicola Spiroplasma kunkelii 47834 0 species 1 948 Acholeplasmatales 0 186329 1 34 order 13 7248 Acholeplasmataceae 12 7214 12 family 0 1 2146 0 1 33926 6 genus 3206 50 Candidatus Phytoplasma 594 1 species group 85632 0 Candidatus Phytoplasma australiense species 1 594 0 59748 1835 3 species group 85620 0 Maize bushy stunt phytoplasma 0 202462 608 1 species 649 species 1 0 100379 Onion yellows phytoplasma 578 1 species 229545 0 Aster yellows witches'-broom phytoplasma 85630 0 727 species group 1 727 1 species 37692 0 Candidatus Phytoplasma mali 3996 5 genus 17 2147 0 1 Acholeplasma 1 species 1145 0 35623 Acholeplasma oculi Acholeplasma laidlawii 2148 0 955 1 species 1262 species 1 0 38986 Acholeplasma palmae Acholeplasma brassicae 617 1 species 0 61635 0 1297 8869 35 phylum Deinococci 188787 0 1 35 class 8869 37 1 0 118964 4386 order 15 77 Deinococcales 1 0 183710 4309 14 family 27 Deinococcaceae 4282 13 genus 104 0 1298 1 Deinococcus Deinococcus radiodurans 312 1 species 1299 0 Deinococcus actinosclerus 1768108 0 1 species 357 0 1309411 species 1 368 Deinococcus soli Cha et al. 2016 0 502394 410 1 species Deinococcus gobiensis Deinococcus swuensis 1 species 358 1182571 0 Deinococcus deserti 0 310783 1 species 253 Deinococcus proteolyticus 475 species 1 55148 0 Deinococcus geothermalis 266 species 1 0 68909 Deinococcus peraridilitoris 0 432329 358 1 species Deinococcus maricopensis 0 309887 species 1 396 0 2623546 361 1 no rank 361 species 1 2080419 0 Deinococcus sp. NW-56 Deinococcus puniceus 1 species 264 0 1182568 Thermales 68933 0 1 36 order 17 3863 188786 0 1 36 3827 16 family Thermaceae 5 274 2 genus 0 1 186191 Marinithermus 1 species 269 0 186192 Marinithermus hydrothermalis 36 8 genus 2275 270 0 1 Thermus Thermus aquaticus 0 271 251 1 species Thermus oshimai 1 species 316 0 56957 1 no rank 254 2619321 0 1 species 254 1111069 0 Thermus sp. CCB_US3_UF1 0 274 species 1 727 Thermus thermophilus 0 37636 196 species 1 Thermus scotoductus Thermus parvatiensis species 1 269 0 456163 0 56956 226 species 1 Thermus brockianus genus 3 787 8 0 65551 1 Meiothermus 0 52022 318 species 1 Meiothermus silvanus 0 277 species 1 461 Meiothermus ruber Oceanithermus 2 2 genus 455 0 208447 1 0 187137 453 species 1 Oceanithermus profundus 0 2762275 2 order 583 family 2 583 0 332247 15 583 genus 2 0 1 332248 Truepera 568 1 species 332249 0 Truepera radiovictrix Chloroflexi 5721 phylum 43 3 200795 0 1 8 class 668 7 189775 0 1 Thermomicrobia 4 subclass 449 85000 0 Sphaerobacterales 85001 0 1 3 449 4 order 3 suborder 446 0 255728 0 85002 1 446 3 family 9 Sphaerobacteraceae 6 2 genus 437 1 0 2056 Sphaerobacter Sphaerobacter thermophilus species 1 431 2057 0 Thermomicrobiales order 3 212 1 0 189776 1 Thermomicrobiaceae 5 2 family 211 1 0 189777 206 1 genus 499 0 500 0 206 species 1 Thermomicrobium roseum 0 1 301297 11 8 class 1245 Dehalococcoidia 819 4 order 0 1202465 0 1202464 1 family 4 819 1 Dehalococcoidaceae Dehalococcoides 61434 0 1 818 3 genus 1 237581 0 208 1 no rank Dehalococcoides sp. UCH007 0 1522671 species 1 208 Dehalococcoides mccartyi species 1 609 0 61435 0 670486 1 17 415 genus 3 Dehalogenimonas Dehalogenimonas formicexedens species 1 231 0 1839801 Dehalogenimonas lykanthroporepellens species 1 167 0 552810 Chloroflexia 0 32061 1 2 9 class 1909 Chloroflexales 32064 0 1 9 1907 8 order 4 suborder 1083 1508594 0 1083 4 family 1106 0 Chloroflexus 0 1 1107 9 1083 genus 4 Chloroflexus aggregans species 1 420 0 152260 1 0 1108 654 2 species 327 Chloroflexus aurantiacus Chloroflexus sp. Y-400-fl 327 1 strain 480224 0 815 3 suborder 0 1508595 1508635 0 family 3 815 0 1 120961 genus 3 815 9 Roseiflexus 2609473 0 388 no rank 1 Roseiflexus sp. RS-1 species 1 388 0 357808 Roseiflexus castenholzii 418 1 species 0 120962 Anaerolineae 0 1 292625 1 757 class 8 Anaerolineales 0 292629 1 756 7 order 4 292628 0 1 12 752 6 family Anaerolineaceae Anaerolinea 3 genus 2 262 0 1 233189 Anaerolinea thermophila 0 167964 species 1 259 278 genus 2 4 0 1 2019482 Brevefilum 1 species 274 0 1986204 Brevefilum fermentans 0 1324991 200 no rank 1 Anaerolineaceae bacterium oral taxon 439 200 1 species 0 1889813 475962 0 1 467 5 class 4 Caldilineae order 4 463 1 0 475963 1 Caldilineales 3 family 462 7 0 1 475964 Caldilineaceae Caldilinea 1 0 233191 2 genus 455 11 0 133453 species 1 444 Caldilinea aerophila 0 1 1382928 672 class 4 3 Ardenticatenia Ardenticatenales 7 669 order 3 0 1 1382929 0 1382930 1 2 family 2 662 Ardenticatenaceae 660 genus 1 1988031 0 Candidatus Promineofilum breve 660 1 species 0 1806508 0 1859062 306 2 no rank 306 2 genus 5 1 0 262406 Thermobaculum 166501 0 1 species 301 Thermobaculum terrenum 0 200940 phylum 9 4446 class 9 4446 11 0 1 67799 Thermodesulfobacteria Thermodesulfobacteriales 8 order 4435 13 188710 0 1 family 7 4422 31 1 0 188711 Thermodesulfobacteriaceae Thermodesulfatator genus 2 612 2 0 1 241192 Thermodesulfatator indicus 171695 0 1 species 610 444090 0 645 genus 1 Caldimicrobium thiodismutans 1653476 0 species 1 645 Thermodesulfobacterium 0 1740 1 7 genus 3 3134 1 species 803 0 1741 Thermodesulfobacterium commune Thermodesulfobacterium geofontis 0 1295609 2324 1 species phylum 5 443 200938 0 443 5 class 1 0 118001 1 Chrysiogenetes 6 442 order 4 0 1 189769 Chrysiogenales Chrysiogenaceae 1 0 189770 7 436 family 3 Desulfurispirillum genus 2 429 6 0 1 393029 Desulfurispirillum indicum 0 936456 1 species 423 203691 0 36385 57 phylum Spirochaetia class 57 36385 87 1 0 203692 Brachyspirales 0 1 1643686 34 8846 order 7 8812 6 family 12 0 1 143786 Brachyspiraceae genus 5 8800 49 1 0 29521 Brachyspira Brachyspira pilosicoli 2617 1 species 0 52584 1 species 2019 0 84377 Brachyspira intermedia Brachyspira murdochii 0 84378 1906 species 1 Brachyspira hyodysenteriae 0 159 species 1 2209 21926 order 41 64 136 0 1 Spirochaetales Borreliaceae 42 15065 family 17 1 0 1643685 1 0 138 275 8455 8 genus Borrelia 0 143 species 1 853 Borrelia anserina Borrelia recurrentis 0 44449 1184 species 1 Borrelia turicatae 142 0 844 species 1 Borrelia parkeri 841 species 1 0 141 Borrelia hermsii 790 1 species 0 140 Borrelia miyamotoi 1861 species 1 0 47466 0 40834 1807 species 1 Borrelia duttonii 0 1 64895 6568 8 genus 438 Borreliella Borreliella burgdorferi 0 139 817 species 1 Borreliella valaisiana 62088 0 614 species 1 Borreliella bavariensis 606 1 species 0 664662 Borreliella afzelii 1 species 928 29518 0 0 64897 872 species 1 Borreliella bissettii Borreliella garinii 1476 1 species 0 29519 1674146 0 817 1 species Borrelia mayonii Spirochaetaceae 1 0 137 6797 family 23 34 9 genus 4 677 1 0 399320 Sphaerochaeta 0 1131703 species 1 216 Sphaerochaeta globosa 0 273376 species 1 168 Sphaerochaeta coccoides Sphaerochaeta pleomorpha 284 1 species 0 1131707 Treponema 20 4050 12 genus 1 0 157 507 1 species 0 215591 Treponema caldarium 409322 0 species 1 583 Treponema pedis 1 species 505 0 158 Treponema denticola Treponema azotonutricium 0 150829 1 species 201 0 167 563 species 1 Treponema succinifaciens 137 species 1 160 0 Treponema pallidum no rank 1 215 0 2638727 1 species 215 1539298 0 Treponema sp. OMZ 838 0 81028 species 1 209 Treponema brennaborense 375 species 1 0 88058 Treponema primitia 0 53435 142 1 species Treponema paraluiscuniculi 221027 0 species 1 593 Treponema putidum Salinispira 0 1 1616789 1 genus 2 782 Salinispira pacifica 781 species 1 0 1307761 0 1911556 1 genus 467 Sediminispirochaeta smaragdinae 0 55206 467 species 1 5 787 genus 3 0 1 146 Spirochaeta Spirochaeta thermophila 1 species 359 0 154 423 1 species 0 46355 Spirochaeta africana 1643688 0 5526 8 order Leptospiraceae 73 family 8 5526 0 1 170 Leptospira 0 1 171 6 genus 5139 37 827 species 1 0 174 Leptospira borgpetersenii 0 28452 species 1 574 Leptospira alstonii 0 173 1 species 2321 Leptospira interrogans 945 species 1 0 172 Leptospira biflexa Leptospira santarosai 435 1 species 28183 0 314 1 genus 0 338321 0 29510 314 1 species Turneriella parva clade 5 693 0 2498710 67814 0 693 phylum 5 Caldisericia 693071 0 1 5 class 693 6 0 1 693072 4 687 order 4 Caldisericales 2 family 3 683 0 1 693073 Caldisericaceae 1 2 genus 681 1 0 693074 Caldisericum 0 693075 species 1 680 Caldisericum exile Elusimicrobia 1 0 74152 7 2414 phylum 8 class 5 1286 1 0 447830 1 Endomicrobia 1285 4 order 0 1783344 1783343 0 1 family 4 1285 1 Endomicrobiaceae Endomicrobium 0 1 1408194 1284 3 genus 10 Endomicrobium proavitum 670 1 species 0 1408281 Candidatus Endomicrobium trichonymphae 1408204 0 species 1 604 1 no rank 682 99260 0 0 167965 682 1 species uncultured Termite group 1 bacterium 439 class 1 0 641853 0 641854 order 1 439 439 family 1 641876 0 genus 1 439 0 423604 Elusimicrobium minutum 439 1 species 0 423605 phylum 6 2543 68297 0 1 0 203486 class 6 2543 9 Dictyoglomia 6 2534 order 5 1 0 203487 Dictyoglomales Dictyoglomaceae 203488 0 1 family 4 2528 12 Dictyoglomus 8 3 genus 2516 13 0 1 Dictyoglomus turgidum 0 513050 1 species 1357 Dictyoglomus thermophilum 1151 species 1 0 14 0 40117 14 phylum 4344 0 203693 1 14 class 4344 27 Nitrospira order 13 4317 24 1 0 189778 Nitrospirales 189779 0 1 12 family 4293 20 Nitrospiraceae Nitrospira genus 5 1150 20 1234 0 1 Candidatus Nitrospira inopinata 0 1715989 240 1 species 0 42253 1 species 401 Nitrospira moscoviensis Nitrospira defluvii 1 species 233 0 330214 0 1325564 species 1 256 Nitrospira japonica Leptospirillum 179 0 1 917 4 genus 9 280 species group 1 0 261386 280 1 species 0 178606 Leptospirillum ferriphilum 655606 0 308 species group 1 species 1 308 0 180 Leptospirillum ferrooxidans 320 species group 1 0 261385 Leptospirillum sp. Group II 'CF-1' 0 1660083 320 species 1 2 genus 2206 3 0 1 28261 Thermodesulfovibrio 0 28262 2203 species 1 Thermodesulfovibrio yellowstonii 5 phylum 840 0 1930617 840 class 5 3 0 1962850 1 Calditrichae 1 0 1962852 6 837 4 order Calditrichales Calditrichaceae 0 1962854 1 1 831 3 family Caldithrix genus 2 830 3 1 0 187144 0 187145 species 1 827 Caldithrix abyssi 0 57723 4052 phylum 20 Acidobacteriia 204432 0 1 19 3548 class 17 819 order 4 10 0 1 332160 Solibacterales Solibacteraceae 332161 0 1 809 3 family 8 801 genus 2 9 332162 0 1 Candidatus Solibacter Candidatus Solibacter usitatus species 1 792 0 332163 2710 12 order 13 1 0 204433 Acidobacteriales 0 1 204434 34 11 family 2697 Acidobacteriaceae Granulicella 0 1 940557 951 genus 3 8 940614 0 species 1 418 Granulicella mallensis 940615 0 525 1 species Granulicella tundricola Candidatus Koribacter 9 375 2 genus 658061 0 1 366 species 1 0 658062 Candidatus Koribacter versatilis Terriglobus 3 genus 749 10 1 0 392733 407 species 1 870903 0 Terriglobus saanensis 332 species 1 392734 0 Terriglobus roseus Acidobacterium 588 genus 2 2 33973 0 1 0 33075 species 1 586 Acidobacterium capsulatum 0 1 1562566 2 3 class 504 Blastocatellia 502 genus 2 1 0 458032 1 Chloracidobacterium Chloracidobacterium thermophilum 0 458033 501 species 1 11844 phylum 27 0 200783 25 27 class 11844 187857 0 1 Aquificae Aquificales 1 0 32069 16 20 order 9850 Hydrogenothermaceae 4435 6 family 10 0 224027 1 6 977 genus 2 0 1 182899 Persephonella 971 1 species 0 309805 Persephonella marina Sulfurihydrogenibium 1 0 212790 genus 3 3448 46 0 309806 1658 species 1 Sulfurihydrogenibium azorense 1 no rank 1744 0 2619248 0 436114 1744 species 1 Sulfurihydrogenibium sp. YO3AOP1 8 4960 11 family 0 1 64898 Aquificaceae 1 genus 299 939 0 Hydrogenobacter thermophilus 940 0 299 1 species 75905 0 2 genus 354 190 1 species 0 75906 Thermocrinis ruber 164 1 species 0 136094 Thermocrinis albus Hydrogenobaculum 149 4109 6 genus 0 168657 1 2622382 0 3960 no rank 5 Hydrogenobaculum sp. Y04AAS1 380749 0 species 1 716 Hydrogenobaculum sp. SN 0 547146 811 species 1 species 1 811 0 547145 Hydrogenobaculum sp. SHO Hydrogenobaculum sp. 3684 1 species 811 547143 0 Hydrogenobaculum sp. HO 547144 0 811 1 species 1 genus 190 0 2713 Aquifex aeolicus 0 63363 species 1 190 2 no rank 439 0 90150 Thermosulfidibacter 1 0 412592 439 2 genus 1 Thermosulfidibacter takaii 0 412593 1 species 438 0 1 1485951 13 1969 6 order Desulfurobacteriales Desulfurobacteriaceae 30 1956 family 5 0 558314 1 Desulfurobacterium 0 64159 1 7 genus 2 1665 Desulfurobacterium thermolithotrophum 1658 species 1 0 64160 Thermovibrio 261 genus 2 3 0 1 171868 258 species 1 0 228745 Thermovibrio ammonificans 26 phylum 50849 32066 0 Fusobacteriia 203490 0 1 66 26 class 50849 Fusobacteriales 0 1 203491 68 50783 order 25 Leptotrichiaceae 17 family 12 12086 0 1 1129771 Leptotrichia 32067 0 1 6883 genus 5 22 species 1 1778 0 40542 Leptotrichia buccalis 2633022 0 5083 3 no rank species 1 1951 0 1785996 Leptotrichia sp. oral taxon 847 Leptotrichia sp. oral taxon 498 species 1 1700 0 712368 0 712357 1 species 1432 Leptotrichia sp. oral taxon 212 1 genus 2 2203 34104 0 1 Streptobacillus Streptobacillus moniliformis 0 34105 1 species 2202 32068 0 1 4 genus 2 1492 Sebaldella 1 species 1488 0 826 Sebaldella termitidis 0 1 168808 2 genus 1491 3 Sneathia Sneathia amnii 0 187101 1 species 1488 1 0 203492 38629 family 12 22 Fusobacteriaceae Ilyobacter 0 167639 1 2 1338 genus 2 1 species 1336 0 167642 Ilyobacter polytropus Fusobacterium 37269 genus 9 162 848 0 1 Fusobacterium gonidiaformans species 1 1445 0 849 Fusobacterium ulcerans 2446 1 species 0 861 Fusobacterium mortiferum 0 850 2244 species 1 species 1 7340 0 860 Fusobacterium periodonticum 0 851 14074 1 species Fusobacterium nucleatum Fusobacterium hwasookii 0 1583098 species 1 4089 Fusobacterium necrophorum 874 species 1 0 859 Fusobacterium varium 1 species 4595 0 856