members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 21723 31 4643 8749239 8686726 4342 54 2 1 0 Bacteria superkingdom phylum 0 40117 14 2982 5 203693 2982 14 0 1 Nitrospira class 13 2977 22 189778 1 0 order Nitrospirales 1 0 family Nitrospiraceae 12 189779 12 2955 1705 5 7 1234 0 1 genus Nitrospira 0 species Candidatus Nitrospira inopinata 1715989 1 300 1325564 393 1 species Nitrospira japonica 0 Nitrospira defluvii species 0 330214 418 1 42253 1 587 species Nitrospira moscoviensis 0 614 2 28261 3 genus Thermodesulfovibrio 0 1 611 1 28262 0 species Thermodesulfovibrio yellowstonii 1 179 624 4 0 1 genus Leptospirillum 655606 1 134 species group 0 Leptospirillum ferrooxidans species 0 134 1 180 species group 0 261386 1 253 0 species Leptospirillum ferriphilum 253 1 178606 1 236 261385 species group 0 1660083 236 1 0 species Leptospirillum sp. Group II 'CF-1' 57723 5458 19 phylum 0 Blastocatellia class 0 1 400 3 1562566 1 Chloracidobacterium genus 0 1 399 2 458032 3 0 Chloracidobacterium thermophilum species 458033 396 1 Acidobacteriia class 0 1 5058 16 204432 24 0 1 order Acidobacteriales 3900 11 56 204433 0 1 Acidobacteriaceae family 10 3844 47 204434 3 33973 2 747 0 1 genus Acidobacterium Acidobacterium capsulatum species 0 33075 744 1 3 1221 940557 5 genus Granulicella 1 0 1 553 940615 species Granulicella tundricola 0 0 Granulicella mallensis species 663 1 940614 Terriglobus genus 0 1 392733 16 3 1165 870903 1 451 Terriglobus saanensis species 0 698 1 392734 0 species Terriglobus roseus 658061 664 1 genus 0 664 1 658062 species Candidatus Koribacter versatilis 0 4 1134 3 332160 0 1 order Solibacterales 4 332161 3 1131 0 1 family Solibacteraceae genus Candidatus Solibacter 0 1 2 1127 332162 38 1 1089 332163 0 Candidatus Solibacter usitatus species phylum 0 508458 10 3115 10 3115 649775 4 class Synergistia 1 0 order Synergistales 0 1 9 3111 649776 9 3102 8 649777 73 family Synergistaceae 1 0 1 178 81466 genus 0 178 1 81468 Aminobacterium colombiense species 0 0 genus 1 231 336260 0 Thermovirga lienii species 1 231 336261 Thermanaerovibrio genus 1 0 2 314 81461 1 1 313 81462 0 species Thermanaerovibrio acidaminovorans 2 508459 2 2015 0 1 Cloacibacillus genus 1 2013 1197717 0 species Cloacibacillus porcorum genus 0 1 291 49894 1 291 97477 Acetomicrobium mobile species 0 1783257 196562 88 0 clade 0 phylum 559 4 134625 1921781 1 4 559 class Kiritimatiellae 0 1 1921782 2 558 3 Kiritimatiellales order 1 0 2 556 1921783 family 0 1 0 genus Kiritimatiella 556 2 41 1921784 Kiritimatiella glycovorans species 0 1307763 1 515 204428 2128 22 phylum 0 class Chlamydiia 1 0 22 2128 204429 2 8 894 2 1963360 1 0 order Parachlamydiales 92714 126 2 family 0 1 0 Waddlia genus 7 71666 126 2 Waddlia chondrophila species 0 1 119 71667 2 634 92713 0 family genus 0 1 241 83551 83552 241 1 Parachlamydia acanthamoebae species 0 1 393 282132 genus 0 Candidatus Protochlamydia naegleriophila species 0 1 393 389348 1 92712 3 132 0 1 family Simkaniaceae 34093 2 2 131 genus Simkania 0 1 83561 1 129 species Simkania negevensis 0 order 0 51291 13 1232 1 0 family Chlamydiaceae 1232 13 2 809 1113537 12 1230 0 no rank 810 66 12 1230 genus Chlamydia 1 0 0 species Chlamydia psittaci 1 126 83554 0 species Chlamydia gallinacea 279 1 1457153 83558 1 50 species Chlamydia pneumoniae 0 83560 1 70 0 Chlamydia muridarum species 0 species Chlamydia abortus 35 1 83555 83556 1 153 0 species Chlamydia felis 0 species Chlamydia trachomatis 77 1 813 Chlamydia avium species 0 1457141 135 1 species Chlamydia caviae 0 101 1 83557 1 66 83559 0 species Chlamydia suis 0 species Chlamydia pecorum 85991 1 72 0 phylum 256845 2146 3 1 0 class Lentisphaeria 4 1313211 3 2146 1 0 Victivallales order 118 278082 2 2142 1674876 1 2024 0 no rank 2094242 1 2024 0 species Victivallales bacterium CCUG 44730 183149 27 9 74201 0 1 phylum Verrucomicrobia 5 343 1955630 1 class Methylacidiphilae 1 0 0 1 order Methylacidiphilales 4 342 2 717963 717964 1 3 340 family Methylacidiphilaceae 0 1 genus 0 2 339 511745 511746 205 1 0 Methylacidiphilum infernorum species species Methylacidiphilum fumariolicum 0 134 1 591154 3301 12 15 414999 1 0 Opitutae class 415001 8 322 4 order Puniceicoccales 0 1 314 3 415002 1 Puniceicoccaceae family 1 0 Coraliomargarita genus 1 0 442430 4 313 2 309 1 395922 0 Coraliomargarita akajimensis species order Opitutales 1 0 415000 60 2964 7 1 0 Opitutaceae family 22 134623 2904 6 Lacunisphaera genus 1 0 2 864 1961799 12 0 species Lacunisphaera limnophila 852 1 1838286 1 0 genus Opitutus 5 178440 2 760 Opitutus terrae species 0 107709 755 1 0 no rank 278955 1 1258 794903 1 1258 Opitutaceae bacterium TAV5 species 0 0 1 class Verrucomicrobiae 2 203494 178041 6 6 48461 5 178039 0 1 order Verrucomicrobiales Akkermansiaceae family 1 0 178033 4 1647988 4 239934 4 3 178029 Akkermansia genus 1 0 0 species Akkermansia muciniphila 239935 176828 1 species Akkermansia glycaniphila 0 1197 1 1679444 2 1403 417295 no rank 0 0 Verrucomicrobia bacterium IMCC26134 species 1637999 1 656 Verrucomicrobia bacterium species 0 1 747 2026799 134549 1 52 class 0 134550 1 52 0 genus 0 no rank 52 1 2648876 1704307 52 1 0 species Candidatus Xiphinematobacter sp. Idaho Grape 8580 32 7 203682 0 1 Planctomycetes phylum 22 6169 203683 28 class Planctomycetia 1 0 2691354 855 4 0 order 2691357 3 460 0 family 0 1 Pirellula genus 185 2 2 123 183 1 125 species Pirellula staleyi 0 genus 0 265488 1 275 species Rhodopirellula baltica 0 275 1 265606 1 395 2691358 0 family 1676125 395 1 genus 0 0 Thermogutta terrifontis species 1331910 395 1 2691356 1681 6 order 0 family Isosphaeraceae 0 1 1763524 21 1681 6 1 1763521 2 728 0 1 Paludisphaera genus Paludisphaera borealis species 0 1387353 1 727 496 1 466152 0 genus Singulisphaera acidiphila species 0 496 1 466153 Isosphaera genus 1 0 436 2 127 2 Isosphaera pallida species 0 1 434 128 112 130 3085 9 order Planctomycetales 0 1 2955 8 126 7 Planctomycetaceae family 0 1 1649480 289 1 0 genus 120 1 289 Planctopirus limnophila species 0 0 genus 1 320 1649490 119 320 1 species Rubinisphaera brasiliensis 0 1536 3 12 118 0 1 genus Planctomyces 0 no rank 1524 2 2648843 1632864 562 1 species Planctomyces sp. SH-PL14 0 1636152 1 962 0 Planctomyces sp. SH-PL62 species 2 803 1 1936111 0 1 Fuerstia genus 0 Fuerstia marisgermanicae species 1 802 1891926 2691355 2 520 order 0 1914233 520 2 0 family 0 1 Gemmata genus 2 520 1 113 2622970 1 519 no rank 0 species Gemmata sp. SH-PL17 0 1630693 1 519 2517206 2 456 class 0 2 456 1127829 3 order Candidatus Brocadiales 0 1 1127830 1 453 family 0 1 453 380738 0 genus 0 species Candidatus Kuenenia stuttgartiensis 174633 1 453 20 666505 7 1948 1 0 Phycisphaerae class Phycisphaerales order 0 1 4 766 666506 76 3 666507 690 3 0 1 family Phycisphaeraceae 1 0 Phycisphaera genus 687 2 3 666508 0 Phycisphaera mikurensis species 684 1 547188 2483366 2 1162 order 0 family 0 2483367 1162 2 0 genus 2483368 2 1162 0 Phycisphaerae bacterium ST-PulAB-D4 species 1 578 1941349 584 1 1940790 Phycisphaerae bacterium L21-RPul-D3 species 0 0 phylum 200783 23 4467 23 4467 5 187857 0 1 class Aquificae 0 1 order Aquificales 19 3588 3 32069 224027 4 1472 5 Hydrogenothermaceae family 0 1 0 genus 319 1 182899 319 1 309805 Persephonella marina species 0 212790 3 1149 3 Sulfurihydrogenibium genus 1 0 no rank 0 1 702 2619248 436114 1 702 species Sulfurihydrogenibium sp. YO3AOP1 0 1 444 309806 0 species Sulfurihydrogenibium azorense 16 64898 12 1959 1 0 family Aquificaceae 1 0 Thermocrinis genus 3 216 1 75905 0 Thermocrinis albus species 1 104 136094 0 Thermocrinis ruber species 75906 1 111 0 genus 106 1 939 106 1 940 0 Hydrogenobacter thermophilus species genus Hydrogenobaculum 1 0 168657 34 6 1494 5 1460 2622382 no rank 0 Hydrogenobaculum sp. Y04AAS1 species 0 380749 227 1 1 308 547146 0 Hydrogenobaculum sp. SN species 1 308 547145 0 Hydrogenobaculum sp. SHO species 547144 309 1 Hydrogenobaculum sp. HO species 0 308 1 547143 0 species Hydrogenobaculum sp. 3684 0 genus 127 1 2713 63363 127 1 0 species Aquifex aeolicus no rank 0 90150 1 154 genus 0 154 1 412592 0 species Thermosulfidibacter takaii 412593 1 154 order 0 1485951 874 3 family 0 558314 874 3 genus 0 171868 1 242 228745 1 242 Thermovibrio ammonificans species 0 genus Desulfurobacterium 1 0 632 2 64159 1 Desulfurobacterium thermolithotrophum species 0 64160 631 1 0 phylum 6 1455 200940 Thermodesulfobacteria class 1 0 67799 2 1455 6 order Thermodesulfobacteriales 0 1 188710 1 1453 5 family 0 1452 4 188711 genus 0 2 954 1740 682 1 1295609 0 species Thermodesulfobacterium geofontis species Thermodesulfobacterium commune 0 1741 272 1 0 genus 444090 173 1 0 species Caldimicrobium thiodismutans 1653476 1 173 325 1 241192 genus 0 species Thermodesulfatator indicus 0 171695 325 1 1 0 Proteobacteria phylum 1063188 1979 403 1224 580370 5 1147 class 0 580371 7 5 1147 Mariprofundales order 0 1 family Mariprofundaceae 1 0 580372 4 4 1140 Mariprofundus genus 1 0 377315 3 1136 3 1921086 528 1 0 species Mariprofundus aestuarium Mariprofundus ferrinatatus species 0 1921087 1 605 subphylum 0 68525 193 148531 69 40424 43 29547 1 0 Epsilonproteobacteria class 534 213849 65 39654 0 1 Campylobacterales order 1 0 Helicobacteraceae family 12 72293 15 4778 0 1 Helicobacter genus 40 209 4479 12 1 192 1591088 Helicobacter himalayensis species 0 0 Helicobacter bilis species 1 456 37372 no rank 0 1 260 2593540 1 260 222136 0 Helicobacter sp. MIT 01-6242 species 1 451 32025 0 Helicobacter hepaticus species 1 1737 210 species Helicobacter pylori 0 217 221 1 0 species Helicobacter mustelae 1 345 138563 species Helicobacter cetorum 0 1 134 212 species Helicobacter acinonychis 0 1 212 76936 Helicobacter typhlonius species 0 0 species Helicobacter felis 214 175 1 1 256 213 0 species Helicobacter cinaedi 0 1 genus Wolinella 1 843 2 287 844 286 1 0 species Wolinella succinogenes Campylobacteraceae family 1 0 31718 41 72294 1867 2321108 5 5207 0 no rank no rank 0 2321207 1481 1 Arcobacter sp. L species 0 1 1481 944547 0 genus 1 1202 2321187 1850254 1202 1 species Arcobacter sp. LPB0137 0 0 1 genus Arcobacter 3 28196 2524 3 28199 860 1 0 Arcobacter nitrofigilis species 28197 1 1661 0 Arcobacter butzleri species 14 57665 9 3047 1 0 Sulfurospirillum genus 0 Sulfurospirillum barnesii species 488 1 44674 Sulfurospirillum multivorans species 0 1 467 66821 0 no rank 2618290 3 1327 220622 478 1 species Sulfurospirillum sp. JPD-1 0 species Sulfurospirillum sp. UCH001 0 426 1 1581011 1986224 423 1 species Sulfurospirillum sp. SL2-1 0 0 species Sulfurospirillum deleyianum 283 1 65553 1 221 194424 0 species Sulfurospirillum halorespirans 247 1 366522 Sulfurospirillum cavolei species 0 26 21597 194 309 Campylobacter genus 0 1 201 1 1774 0 species Campylobacter lari Campylobacter jejuni species 0 197 1 2891 Campylobacter subantarcticus species 0 1 753 497724 324 1 522485 species Campylobacter avium 0 species Campylobacter iguaniorum 0 1244531 1 337 196 1 936 0 Campylobacter fetus species 552 1 199 0 species Campylobacter concisus 1965231 993 1 Campylobacter pinnipediorum species 0 0 species Campylobacter cuniculorum 1 330 374106 Campylobacter curvus species 0 368 1 200 0 Campylobacter hyointestinalis species 502 1 198 0 Campylobacter lanienae species 75658 1 488 0 species Campylobacter gracilis 824 1 284 532 1 1031542 Campylobacter volucris species 0 1 152 28898 Campylobacter helveticus species 0 Campylobacter ureolyticus species 0 783 1 827 Campylobacter hominis species 0 76517 367 1 4834 1 195 species Campylobacter coli 0 1 622 488546 0 species Campylobacter peloridis 547 1 260714 Campylobacter insulaenigrae species 0 0 no rank 4 1926 2593542 1660076 1 387 Campylobacter sp. RM12175 species 0 0 species Campylobacter sp. RM16704 1500960 667 1 species Campylobacter sp. RM6137 0 416 1 1660073 1 456 1660074 species Campylobacter sp. RM8964 0 206 1 993 0 species Campylobacter sputorum 0 family 2771472 1522 3 genus 0 265570 2 1024 1 493 2646778 0 no rank 0 Sulfurovum sp. NBC37-1 species 387093 1 493 0 species Sulfurovum lithotrophicum 206403 531 1 1 498 269260 genus 0 269261 1 498 0 species Nitratifractor salsuginis family 0 5 1102 2771471 2 286130 341 2 0 1 Sulfuricurvum genus 0 species Sulfuricurvum kujiense 1 339 148813 4 202746 3 761 0 1 Sulfurimonas genus 202747 433 1 0 Sulfurimonas autotrophica species 39766 324 1 species Sulfurimonas denitrificans 0 235899 727 3 0 order 2 484 224467 0 family Nautilia genus 1 0 2 484 191291 3 244787 481 1 Nautilia profundicola species 0 2795691 1 243 0 family 0 genus 243 1 269258 0 no rank 2624044 243 1 1 243 387092 0 species Nitratiruptor sp. SB155-2 144 28221 108107 124 0 1 Deltaproteobacteria class 1 0 Syntrophobacterales order 10 1570 8 213462 1150 6 2 213468 0 1 Syntrophaceae family 60892 1 339 0 genus 1 339 60893 species Desulfobacca acetoxidans 0 Desulfomonile genus 0 1 2357 12 392 2 2358 1 380 species Desulfomonile tiedjei 0 417 2 4 43773 0 1 genus Syntrophus 316277 413 1 species Syntrophus aciditrophicus 0 1 0 family Syntrophobacteraceae 412 3 10 213465 1 0 Syntrophobacter genus 4 29526 402 2 119484 398 1 species Syntrophobacter fumaroxidans 0 order Desulfurellales 0 1 5 910 213113 3 117942 5 907 4 Desulfurellaceae family 0 1 33001 6 543 2 Desulfurella genus 0 1 0 species Desulfurella acetivorans 1 537 33002 359 1 84404 genus 0 species Hippea maritima 0 84405 1 359 1 0 Desulfobacterales order 18 6566 35 213118 Desulfobacteraceae family 0 1 3469 9 213119 41 0 1 genus Desulfatibacillum 5 218207 2 545 540 1 259354 0 Desulfatibacillum alkenivorans species 896 8 3 1566 genus Desulfococcus 0 1 species Desulfococcus multivorans 0 845 1 897 0 species Desulfococcus oleovorans 1 713 181663 727 1 28222 0 genus Desulfobacula toluolica species 0 28223 727 1 590 2 2295 2 genus Desulfobacterium 0 1 0 Desulfobacterium autotrophicum species 2296 588 1 23 213121 3062 8 1 0 Desulfobulbaceae family 1 0 genus Desulfocapsa 2 495 2 53318 65555 493 1 0 Desulfocapsa sulfexigens species 0 1 Desulfobulbus genus 2 1143 10 893 Desulfobulbus sp. ORNL species 0 1986146 1 1133 genus 0 782 1 427922 1 782 427923 species Desulfurivibrio alkaliphilus 0 genus Desulfotalea 0 1 109168 4 2 619 84980 1 615 species Desulfotalea psychrophila 0 1 0 order Desulfovibrionales 25 55250 206 213115 1 0 family Desulfomicrobiaceae 34 213116 4 2266 2232 3 9 898 0 1 genus Desulfomicrobium 132132 1 1174 species Desulfomicrobium orale 0 899 1 1049 0 Desulfomicrobium baculatum species 18 52400 194924 135 family Desulfovibrionaceae 1 0 genus 0 1057 1 2582840 873 1057 1 Desulfovibrio africanus species 0 genus Desulfovibrio 1 0 46723 9 872 150 1 1449 184917 species Desulfovibrio magneticus 0 Desulfovibrio vulgaris species 0 881 1 3543 2593640 885 1 0 no rank 0 Desulfovibrio sp. G11 species 631220 1 885 901 1 34569 Desulfovibrio piger species 0 0 species Desulfovibrio desulfuricans 876 1 2683 1 1885 44742 Desulfovibrio fairfieldensis species 0 Desulfovibrio alaskensis species 0 58180 1123 1 0 species Candidatus Desulfovibrio trichonymphae 1725232 436 1 2035811 33 3074 4 Pseudodesulfovibrio genus 1 0 species Pseudodesulfovibrio aespoeensis 0 182210 1150 1 0 species Pseudodesulfovibrio profundus 57320 627 1 Pseudodesulfovibrio indicus species 0 1716143 1 1264 2794998 1 916 0 genus Desulfovibrio salexigens species 0 880 1 916 Lawsonia genus 0 1 41707 15 2 495 29546 480 1 0 Lawsonia intracellularis species 0 1 family Desulfohalobiaceae 3 213117 2 378 45662 375 1 genus 0 45663 1 375 Desulfohalobium retbaense species 0 266 69541 14706 24 1 0 Desulfuromonadales order Geobacteraceae family 1 0 213422 70 9505 14 28231 137 8651 11 genus Geobacter 0 1 0 species Geobacter pickeringii 812 1 345632 Geobacter bemidjiensis species 0 1 910 225194 Geobacter daltonii species 0 1203471 1 522 723 1 351604 0 species Geobacter uraniireducens 0 Geobacter sulfurreducens species 35554 1 729 species Geobacter metallireducens 0 28232 1 798 313985 1 909 Geobacter lovleyi species 0 0 species Geobacter anodireducens 1 881 1340425 no rank 0 2230 2 2627627 0 species Geobacter sp. M18 1148 1 443143 443144 1 1082 0 Geobacter sp. M21 species 2 784 392332 2 Geoalkalibacter genus 0 1 483547 782 1 species Geoalkalibacter subterraneus 0 Desulfuromonadaceae family 1 0 213421 39 9 4935 3 1904 37 890 1 0 genus Desulfuromonas 1 1101 2614637 no rank 0 1823759 1 1101 0 Desulfuromonas sp. DDH964 species 0 species Desulfuromonas soudanensis 766 1 1603606 2992 5 18 26 Pelobacter genus 1 0 no rank 0 2620299 1 556 Pelobacter sp. SFB93 species 0 1842532 556 1 0 Pelobacter propionicus species 1 979 29543 731 1 29542 0 Pelobacter acetylenicus species 19 700 1 0 species Pelobacter carbinolicus 1358 4 453227 11 Desulfarculales order 0 1 3 1347 18 453228 1 0 family Desulfarculaceae 13 453229 1329 2 0 1 genus Desulfarculus 1316 1 453230 species Desulfarculus baarsii 0 0 1 order Myxococcales 37 27603 339 29 25 20560 80811 suborder 0 family Vulgatibacteraceae 0 1 2 654 1524213 1 0 genus 1 653 1524214 species Vulgatibacter incomptus 0 1391653 653 1 Myxococcaceae family 0 1 9 10066 31 38 1 0 genus Corallococcus 3245 3 42 83461 species Corallococcus coralloides 0 184914 1807 1 1396 1 35 0 species Myxococcus macrosporus 6783 5 32 182 genus Myxococcus 0 1 1 1249 34 species Myxococcus xanthus 0 33 1 2962 Myxococcus fulvus species 0 0 species Myxococcus hansupus 1297742 1184 1 species Myxococcus stipitatus 0 1 1206 83455 39 85 9 5605 family Archangiaceae 0 1 18 44 1228 2 1 0 genus Melittangium 1210 1 83453 species Melittangium boletus 0 genus Archangium 0 1 47 23 1667 2 48 1644 1 0 Archangium gephyra species 40 7 2 1126 genus Stigmatella 1 0 Stigmatella aurantiaca species 0 1 1119 41 2 1499 14 42 0 1 genus Cystobacter Cystobacter fuscus species 0 43 1485 1 1 0 family Anaeromyxobacteraceae 46 1524215 4235 5 0 1 Anaeromyxobacter genus 65 161492 4189 4 0 species Anaeromyxobacter dehalogenans 161493 1 2026 2098 2 2620896 0 no rank 0 species Anaeromyxobacter sp. Fw109-5 1 987 404589 species Anaeromyxobacter sp. K 0 1111 1 447217 80812 5348 8 0 suborder 13 49 4108 5 0 1 Polyangiaceae family genus Sorangium 1 0 3382 2 39643 7 species Sorangium cellulosum 0 56 1 3375 genus Chondromyces 1 0 2 713 50 4 Chondromyces crocatus species 0 52 1 709 1055686 4 1240 3 Sandaracinaceae family 1 0 0 1 Sandaracinus genus 2 1236 10 1055688 927083 1 1226 species Sandaracinus amylolyticus 0 1356 3 224462 suborder 0 3 1356 10 224464 0 1 family Kofleriaceae 1 0 Haliangium genus 13 162027 1346 2 80816 1333 1 species Haliangium ochraceum 0 Oligoflexia class 1 0 2791 10 1553900 1 order Bdellovibrionales 0 1 213481 5 1782 5 213483 6 1777 4 family Bdellovibrionaceae 1 0 3 1771 9 958 0 1 Bdellovibrio genus 204 1 453816 species Bdellovibrio exovorus 0 959 1558 1 Bdellovibrio bacteriovorus species 0 order Bacteriovoracales 0 1 2024979 3 1008 4 family 0 1 483 263369 1 483 146784 0 genus Bacteriovorax stolpii species 0 483 1 960 2 522 1652132 family 0 0 1 genus Halobacteriovorax 3 1652133 2 522 97084 519 1 0 species Halobacteriovorax marinus 870 453731 1236 814 Gammaproteobacteria class 0 1 Cardiobacteriales order 0 1 157 3 135615 7 150 2 868 0 family genus Dichelobacter 1 0 2 150 869 1 0 species Dichelobacter nodosus 870 1 149 Methylococcales order 0 1 3440 13 135618 20 family Methylococcaceae 1 0 403 20 12 3420 genus Methylococcus 0 1 2 594 413 25 species Methylococcus capsulatus 0 414 569 1 2043 5 416 12 Methylomonas genus 1 0 Methylomonas denitrificans species 0 375 1 1538553 Methylomonas koyamae species 0 702114 1 551 2608980 1 642 0 no rank species Methylomonas sp. DH-1 0 642 1 1727196 421 1 463 0 Methylomonas methanica species genus Methylomicrobium 0 1 454 2 39773 3 451 1 271065 0 species Methylomicrobium alcaliphilum Methylovulum genus 1 0 762296 3 309 2 species Methylovulum psychrotolerans 0 306 1 1704499 order Chromatiales 1 0 15063 49 135613 198 Halothiobacillaceae family 1 0 255526 4 4 926 Halothiobacillus genus 1 0 109262 21 3 922 1 483 2636392 0 no rank 0 Halothiobacillus sp. LS2 species 1860122 483 1 species Halothiobacillus neapolitanus 0 927 1 418 4 1676141 563 3 1 0 Wenzhouxiangellaceae family 559 2 1676142 7 Wenzhouxiangella genus 1 0 Wenzhouxiangella marina species 0 1 552 1579979 1 0 Chromatiaceae family 82 1046 5841 17 Allochromatium genus 1 0 811 2 85072 6 1049 805 1 0 Allochromatium vinosum species 0 genus 1980513 1 250 1630141 250 1 species Candidatus Nitrosoglobus terrae 0 14 13724 2 785 0 1 genus Thiocystis 73141 1 771 Thiocystis violascens species 0 53392 23 2 1214 genus Thiodictyon 1 0 Candidatus Thiodictyon syntrophicum species 0 1191 1 1166950 2 1227 4 524 0 1 genus Nitrosococcus 133539 1 245 0 species Nitrosococcus halophilus species Nitrosococcus watsonii 0 124 1 473531 Nitrosococcus oceani species 0 1229 153 1 genus Marichromatium 1 0 85076 3 686 2 1 683 37487 Marichromatium purpuratum species 0 717 2 156885 5 Thioflavicoccus genus 0 1 0 Thioflavicoccus mobilis species 1 712 80679 0 no rank 82569 772 1 species Chromatiaceae bacterium 2141T.STBD.0c.01a 0 1978339 1 772 5710 18 72276 77 family Ectothiorhodospiraceae 1 0 302 2 1765964 6 genus Acidihalobacter 1 0 Acidihalobacter prosperus species 0 160660 296 1 85108 14 2 636 Halorhodospira genus 1 0 species Halorhodospira halophila 0 1053 1 622 6 2987 106633 38 Thioalkalivibrio genus 1 0 0 species Thioalkalivibrio paradoxus 545 1 108010 1033854 1 808 0 species Thioalkalivibrio sulfidiphilus no rank 0 2621013 480 1 1 480 396595 Thioalkalivibrio sp. K90mix species 0 186931 538 1 Thioalkalivibrio nitratireducens species 0 Thioalkalivibrio versutus species 0 106634 578 1 Ectothiorhodospira genus 1 0 2 426 1051 1 0 no rank 2684909 1 425 1442136 1 425 Ectothiorhodospira sp. BSL-9 species 0 2 1335745 516 3 0 1 genus Spiribacter species Spiribacter curvatus 0 1335757 1 371 0 species Spiribacter salinus 1335746 1 143 1 0 Alkalilimnicola genus 766 2 2 133193 0 Alkalilimnicola ehrlichii species 351052 764 1 850 2 449719 family 0 2 850 21 437504 0 1 genus Granulosicoccus 0 species Granulosicoccus antarcticus 437505 1 829 family 0 1738654 2 274 1 0 genus Woeseia 3 1738655 274 2 271 1 1548547 0 Woeseia oceani species no rank 0 451214 701 2 genus Thiohalobacter 1 0 1273155 11 2 701 585455 1 690 Thiohalobacter thiocyanaticus species 0 135614 335 53 37422 order Xanthomonadales 1 0 14 6640 1775411 128 Rhodanobacteraceae family 1 0 1 0 Luteibacter genus 722 2 27 242605 1 695 242606 species Luteibacter rhizovicinus 0 231454 68 4 2576 genus Dyella 0 1 0 Dyella jiangningensis species 1 846 1379159 231455 905 1 species Dyella japonica 0 0 Dyella thiooxydans species 757 1 445710 genus Frateuria 0 1 70411 4 684 2 Frateuria aurantia species 0 1 680 81475 0 1 Dokdonella genus 6 323413 2 1172 0 species Dokdonella koreensis 323415 1 1166 1004 2 75309 6 genus Rhodanobacter 1 0 666685 998 1 Rhodanobacter denitrificans species 0 2233801 354 1 0 genus 0 species Xanthomonadales bacterium D13 2021234 1 354 32033 285 38 30447 Xanthomonadaceae family 0 1 genus Lysobacter 1 0 68 42 5 3904 0 Lysobacter gummosus species 262324 1 737 84531 1 1038 0 species Lysobacter antibioticus species Lysobacter enzymogenes 0 69 948 1 species Lysobacter capsici 0 1 1139 435897 2370 1 2 469 genus Xylella 0 1 species Xylella fastidiosa 0 468 1 2371 0 genus 584 1 83614 species Luteimonas sp. 100111 0 584 1 2006110 338 580 12726 17 Xanthomonas genus 1 0 Xanthomonas sacchari species 0 56458 755 1 29447 1 491 Xanthomonas albilineans species 0 0 Xanthomonas axonopodis species 53413 382 1 56459 409 1 0 species Xanthomonas vasicola Xanthomonas alfalfae species 0 366650 1 451 0 species Xanthomonas perforans 442694 820 1 species Xanthomonas euvesicatoria 0 1 520 456327 Xanthomonas translucens species 0 1351 1 343 species Xanthomonas hortorum 0 56454 1 627 0 species group 2348 2 643453 0 Xanthomonas fuscans species 1 579 366648 1769 1 346 0 Xanthomonas citri species 1087 1 347 species Xanthomonas oryzae 0 352 1 1985254 0 species Xanthomonas phaseoli 48664 347 1 species Xanthomonas fragariae 0 0 Xanthomonas campestris species 339 1 1657 species Xanthomonas vesicatoria 0 56460 1 549 Pseudoxanthomonas genus 0 1 83618 38 2121 3 314722 1 1476 0 species Pseudoxanthomonas suwonensis 607 1 415229 0 Pseudoxanthomonas spadix species 0 1 Stenotrophomonas genus 10358 9 262 40323 0 Stenotrophomonas rhizophila species 216778 700 1 4 2663 196198 no rank 0 688 1 1904944 species Stenotrophomonas sp. LM091 0 1827305 779 1 0 species Stenotrophomonas sp. MYb57 679 1 2005046 0 species Stenotrophomonas sp. WZN-1 517 1 1793721 Stenotrophomonas sp. KCTC 12332 species 0 128780 1 1200 0 species Stenotrophomonas acidaminiphila 0 Stenotrophomonas nitritireducens species 83617 1 526 995085 1 5007 0 species group species Stenotrophomonas maltophilia 0 1 5007 40324 Aeromonadales order 1 0 135624 140 21893 28 84642 235 21753 27 family Aeromonadaceae 0 1 18013 18 642 1128 genus Aeromonas 1 0 919 1 558964 Aeromonas aquatica species 0 644 3956 1 0 Aeromonas hydrophila species 257493 5127 8 0 no rank 616 1 1920107 0 species Aeromonas sp. ASNIH7 1636607 480 1 Aeromonas sp. ASNIH2 species 0 species Aeromonas sp. ASNIH3 0 666 1 1636608 2033033 682 1 0 Aeromonas sp. CU5 species Aeromonas sp. ASNIH5 species 0 635 1 1758179 2033032 623 1 0 Aeromonas sp. CA23 species 1 587 1636606 species Aeromonas sp. ASNIH1 0 1636609 1 838 Aeromonas sp. ASNIH4 species 0 648 1 651 0 Aeromonas caviae species Aeromonas salmonicida species 0 645 1 1181 948519 915 1 0 Aeromonas rivipollensis species 0 Aeromonas dhakensis species 899 1 196024 0 species Aeromonas veronii 654 1 1915 species Aeromonas schubertii 0 652 1 664 651 1 658 species Aeromonas media 0 1 0 Zobellella genus 4 347533 2 1058 species Zobellella denitrificans 0 347534 1054 1 1 0 genus Oceanimonas 3 129577 798 2 2636315 795 1 no rank 0 species Oceanimonas sp. GK1 0 1 795 511062 936 3 5 225143 0 1 Oceanisphaera genus 1903694 199 1 species Oceanisphaera sp. AMac2203 0 Oceanisphaera profunda species 0 1 732 1416627 1 713 43947 genus 0 0 Tolumonas auensis species 43948 713 1 2 1775403 398 4 0 1 order Nevskiales 2689614 2 395 family 0 0 1 Steroidobacter genus 1 469322 2 395 465721 394 1 species Steroidobacter denitrificans 0 568386 1 1 Sinobacteraceae family 0 0 1 Legionellales order 5898 19 9 118969 1 0 Legionellaceae family 14 5348 4 444 Legionella genus 1 0 445 5 5043 12 Legionella hackeliae species 0 449 398 1 66969 373 1 0 Legionella waltersii species 144 1 2005262 0 species Legionella endosymbiont of Polyplax serrata 0 species Legionella clemsonensis 1867846 1 232 0 Legionella sainthelensi species 28087 1 495 96230 386 1 0 species Legionella fallonii 0 species Legionella lansingensis 45067 235 1 0 species Legionella spiritensis 1 230 452 0 species Legionella oakridgensis 29423 253 1 0 Legionella pneumophila species 1 1827 446 450 465 1 0 Legionella longbeachae species 301 1 465 0 genus 0 Tatlockia micdadei species 301 1 451 family Coxiellaceae 0 1 118968 25 541 4 genus 0 776 2 373 1 283 777 0 species Coxiella burnetii 0 no rank 90 1 2676648 Coxiella endosymbiont of Amblyomma americanum species 0 325775 1 90 1 143 134284 no rank 0 1592897 143 1 Coxiella-like endosymbiont species 0 order Pseudomonadales 1 0 72274 360 128 99846 family Pseudomonadaceae 0 1 85 81726 135621 564 subfamily 0 351 2398 3 genus Azotobacter 0 1 352 31 3 2398 Azotobacter vinelandii species 0 1 954 354 1 1413 353 0 species Azotobacter chroococcum 0 genus 1849530 1 321 1697053 1 321 Oblitimonas alkaliphila species 0 78443 80 2728 286 1 0 Pseudomonas genus species Pseudomonas antarctica 0 1 403 219572 0 species group 136845 6 12120 0 Pseudomonas putida species 303 6717 1 Pseudomonas mosselii species 0 1169 1 78327 47885 1 745 species Pseudomonas oryzihabitans 0 0 Pseudomonas fulva species 47880 1 1386 1 626 70775 Pseudomonas plecoglossicida species 0 76759 1 1477 species Pseudomonas monteilii 0 no rank 0 30 16413 196821 Pseudomonas sp. DR 5-09 species 0 1534110 1 476 1 734 1856685 species Pseudomonas sp. TCU-HL1 0 2083055 688 1 Pseudomonas sp. LH1G9 species 0 0 Pseudomonas sp. SWI6 species 2083051 1 449 1659194 1 468 species Pseudomonas sp. GR 6-02 0 2018067 1 552 species Pseudomonas sp. FDAARGOS_380 0 species Pseudomonas sp. M30-35 0 1 330 1981174 1649877 671 1 species Pseudomonas sp. CCOS 191 0 species Pseudomonas sp. FGI182 0 1 541 1259844 0 Pseudomonas sp. MRSN12121 species 1 582 1611770 0 species Pseudomonas sp. StFLB209 581 1 1028989 1500687 1 721 species Pseudomonas sp. St29 0 0 species Pseudomonas sp. ATCC 13867 1 901 1294143 Pseudomonas sp. UW4 species 0 365 1 1207075 Pseudomonas sp. NC02 species 0 460 1 2067572 species Pseudomonas sp. LPH1 0 1 553 1898684 0 Pseudomonas sp. PONIH3 species 600 1 1636610 1 766 1500686 0 Pseudomonas sp. Os17 species 1 416 2083054 0 Pseudomonas sp. LG1D9 species 1338689 512 1 0 Pseudomonas sp. JY-Q species 0 species Pseudomonas sp. URMO17WK12:I11 1 873 1283291 0 species Pseudomonas sp. S-6-2 1931241 663 1 1827300 317 1 Pseudomonas sp. MYb193 species 0 Pseudomonas sp. HLS-6 species 0 2049589 392 1 0 Pseudomonas sp. VLB120 species 69328 449 1 2069256 518 1 0 species Pseudomonas sp. XWY-1 2083052 520 1 0 species Pseudomonas sp. SWI36 species Pseudomonas sp. CC6-YY-74 0 1930532 475 1 0 species Pseudomonas sp. SWI44 2083053 403 1 Pseudomonas sp. TKP species 0 1 437 1415630 0 species Pseudomonas alcaliphila 625 1 101564 1853130 1 471 0 species Pseudomonas silesiensis 157783 327 1 species Pseudomonas cremoricolorata 0 244566 516 1 0 Pseudomonas lurida species 0 species Pseudomonas knackmussii 855 1 65741 0 species Pseudomonas versuta 1788301 415 1 930166 1284 1 Pseudomonas brassicacearum species 0 198620 954 1 0 species Pseudomonas koreensis species group 0 136849 7484 8 1 867 251701 0 Pseudomonas syringae group genomosp. 3 species species Pseudomonas cichorii 0 1 478 36746 251695 1 3392 0 species subgroup 0 species Pseudomonas syringae 317 3392 1 0 species Pseudomonas viridiflava 33069 668 1 1 435 46257 species Pseudomonas avellanae 0 251698 2 1196 0 species subgroup 0 species Pseudomonas amygdali 1 564 47877 1 632 29438 species Pseudomonas savastanoi 0 2775504 448 1 no rank 0 448 1 1206777 0 Pseudomonas sp. Lz4W species 136846 4815 2 species group 0 578833 4102 1 species subgroup 0 316 4102 1 Pseudomonas stutzeri species 0 1 713 74829 Pseudomonas balearica species 0 136841 6 9875 species group 0 Pseudomonas mendocina species 0 2467 1 300 0 species Pseudomonas resinovorans 53412 814 1 0 species Pseudomonas alcaligenes 43263 876 1 species Pseudomonas citronellolis 0 53408 1 1694 0 species subgroup 965 1 1232139 1 965 1149133 Pseudomonas furukawaii species 0 287 3059 1 0 Pseudomonas aeruginosa species Pseudomonas cerasi species 0 1 551 1583341 1 851 157782 Pseudomonas parafulva species 0 0 species Pseudomonas rhizosphaerae 564 1 216142 844 1 237610 Pseudomonas psychrotolerans species 0 0 Pseudomonas alkylphenolica species 237609 1 478 species group 0 9728 9 136843 0 species Pseudomonas mandelii 75612 1 492 0 Pseudomonas protegens species 1 772 380021 200451 1 450 species Pseudomonas poae 0 species Pseudomonas azotoformans 0 827 1 47878 0 Pseudomonas trivialis species 1 385 200450 1 5493 294 0 Pseudomonas fluorescens species 0 Pseudomonas orientalis species 76758 1 387 0 species Pseudomonas veronii 448 1 76761 474 1 47879 0 Pseudomonas corrugata species 4490 2 136842 0 species group 0 species Pseudomonas chlororaphis 587753 3138 1 1352 1 296 Pseudomonas fragi species 0 104087 1 1208 species Pseudomonas frederiksbergensis 0 0 Pseudomonas entomophila species 312306 1 444 0 1 family Moraxellaceae 17760 42 49 468 25 12954 469 111 Acinetobacter genus 1 0 0 species Acinetobacter indicus 406 1 756892 species 0 535 1 202950 62977 535 1 Acinetobacter sp. ADP1 strain 0 40214 278 1 0 species Acinetobacter johnsonii Acinetobacter larvae species 0 1789224 1 191 0 species Acinetobacter schindleri 1 374 108981 Acinetobacter haemolyticus species 0 29430 1 395 Acinetobacter bereziniae species 0 106648 1 448 40216 1 552 0 Acinetobacter radioresistens species 0 Acinetobacter soli species 487316 1 266 1 483 1324350 Acinetobacter equi species 0 7 2610 196816 no rank 0 0 species Acinetobacter sp. ACNIH1 1 361 1636603 1808001 469 1 0 species Acinetobacter sp. LoGeW2-3 1407071 404 1 0 species Acinetobacter sp. TGL-Y2 1 386 1758189 0 species Acinetobacter sp. ACNIH2 2079596 1 162 0 Acinetobacter sp. SWBY1 species species Acinetobacter sp. NCu2D-2 0 1608473 369 1 1 459 1646498 species Acinetobacter sp. TTH0-4 0 5 5379 909768 0 species group 446 1 106654 0 Acinetobacter nosocomialis species 470 2044 1 Acinetobacter baumannii species 0 0 Acinetobacter calcoaceticus species 1109 1 471 species Acinetobacter pittii 0 48296 1 1514 Acinetobacter lactucae species 0 1785128 266 1 species Acinetobacter oleivorans 0 1 413 1148157 40215 1 513 Acinetobacter junii species 0 genus Psychrobacter 1 0 11 2893 497 55 1 218 45610 0 Psychrobacter urativorans species 330922 1 198 species Psychrobacter cryohalolentis 0 Psychrobacter alimentarius species 0 261164 1 387 Psychrobacter arcticus species 0 269 1 334543 1766 6 196806 0 no rank species Psychrobacter sp. AntiMn-1 0 1720344 1 396 species Psychrobacter sp. DAB_AL43B 0 1028416 208 1 species Psychrobacter sp. P11G5 0 1 297 1699624 349106 1 370 0 Psychrobacter sp. PRwf-1 species 571800 1 192 0 Psychrobacter sp. G species 1 303 1699622 species Psychrobacter sp. P2G3 0 1864 5 54 475 0 1 genus Moraxella Moraxella catarrhalis species 0 443 1 480 species Moraxella osloensis 0 1 692 34062 1 477 386891 species Moraxella bovoculi 0 0 Moraxella ovis species 198 1 29433 Immundisolibacterales order 0 1 3 788 1934945 12 1 0 Immundisolibacteraceae family 25 1934946 776 2 genus 0 1934947 1 751 0 species Immundisolibacter cernigliae 1810504 1 751 118884 12 3123 no rank 0 0 clade 32036 913 3 113267 1 298 0 Bathymodiolus septemdierum thioautotrophic gill symbiont species 241 1 1541743 genus 0 Candidatus Ruthia magnifica species 0 1 241 386487 1 374 410330 0 Calyptogena okutanii thioautotrophic gill symbiont species 497 2 349742 2 Sedimenticola genus 0 1 0 Sedimenticola thiotaurini species 1 495 1543721 0 clade 198346 1 469 1 469 186490 species Candidatus Baumannia cicadellinicola 0 2 371 1 1608298 1 0 genus Thiolapillus 1076588 370 1 0 species Thiolapillus brandeum 2 414 2 1524249 1 0 Pseudohongiella genus 1249552 1 412 0 Pseudohongiella spirulinae species 2 459 655184 genus 0 1705394 143 1 0 species Candidatus Thioglobus autotrophicus 1 316 1427364 species Candidatus Thioglobus singularis 0 Enterobacterales order 0 1 91347 682 148250 242 family Yersiniaceae 1 0 1903411 119 39 25046 0 1 Gibbsiella genus 2 761 12 929812 929813 1 749 0 Gibbsiella quercinecans species 1745211 8 531 2 Chania genus 0 1 0 species Chania multitudinisentens 523 1 1639108 1565532 6 1 0 Rouxiella genus 1 0 Rahnella genus 29 34037 4 1558 0 no rank 2635087 2 991 1805933 1 517 Rouxiella sp. ERMR1:05 species 0 474 1 741091 0 Rahnella sp. Y9602 species 0 species Rahnella aquatilis 538 1 34038 13 6684 629 177 genus Yersinia 1 0 29484 1 1340 Yersinia frederiksenii species 0 0 no rank 1 340 2653513 1839800 1 340 species Yersinia sp. FDAARGOS_228 0 29485 312 1 0 species Yersinia rohdei 29483 262 1 0 Yersinia aldovae species species group 0 1649845 1218 3 0 species Yersinia similis 1 303 367190 Yersinia pseudotuberculosis species 0 537 1 633 Yersinia pestis species 0 632 1 378 263819 417 1 0 species Yersinia aleksiciae 422 1 28152 0 Yersinia kristensenii species 630 1 1467 0 Yersinia enterocolitica species 0 Yersinia intermedia species 1 351 631 Yersinia ruckeri species 0 29486 1 378 626 613 16 15387 1 0 genus Serratia 0 Serratia marcescens species 1 3718 615 898 1 61651 species Serratia ficaria 0 896 1 61652 0 species Serratia rubidaea 28151 1 578 0 species Serratia proteamaculans 0 species Serratia fonticola 1396 1 47917 0 species Serratia liquefaciens 1 743 614 species Serratia plymuthica 0 82996 1621 1 8 4911 2647522 no rank 0 784 1 1327989 Serratia sp. FS14 species 0 104623 544 1 0 species Serratia sp. ATCC 39006 0 species Serratia sp. MYb239 2033438 1 754 671990 660 1 species Serratia sp. FGI94 0 species Serratia sp. SSNIH1 0 590 1 1758196 1 609 488142 0 species Serratia sp. SCBI Serratia sp. AS12 species 0 485 1 768490 768493 485 1 0 species Serratia sp. AS13 Morganellaceae family 0 1 1903414 44 8608 21 Proteus genus 1 0 583 1 3 1382 Proteus vulgaris species 0 585 1 558 Proteus mirabilis species 0 1 823 584 Providencia genus 0 1 1477 4 586 7 549 1 587 0 Providencia rettgeri species 588 611 1 0 Providencia stuartii species species Providencia alcalifaciens 0 1 310 126385 genus 0 637 323 1 0 species Arsenophonus symbiont of Lipoptena fortisetosa 1 323 634113 581 19 2 1040 genus Morganella 0 1 0 species Morganella morganii 582 1021 1 genus Photorhabdus 0 1 4 1788 29487 32 574560 488 1 0 Photorhabdus temperata species 0 Photorhabdus luminescens species 29488 315 1 291112 953 1 Photorhabdus asymbiotica species 0 Xenorhabdus genus 0 1 2554 6 626 22 Xenorhabdus nematophila species 0 628 1 438 species Xenorhabdus doucetiae 0 351671 443 1 40577 361 1 0 species Xenorhabdus poinarii 351679 1 277 Xenorhabdus hominickii species 0 40576 1013 1 Xenorhabdus bovienii species 0 78467 117 543 771 family Enterobacteriaceae 1 0 5 2956 36866 0 no rank 693444 1 730 species Enterobacteriaceae bacterium strain FGI 57 0 species Enterobacteriaceae bacterium ENNIH3 0 1920128 1 552 2066051 1 415 species Enterobacteriaceae bacterium ENNIH1 0 Enterobacteriaceae bacterium ENNIH2 species 0 1 545 1920109 species Plautia stali symbiont 0 891974 714 1 3 4295 590 24 Salmonella genus 0 1 0 Salmonella bongori species 54736 1 576 Salmonella enterica species 0 1 3695 28901 0 genus 1 540 579 540 1 61648 Kluyvera intermedia species 0 4 1984 83654 133 genus Leclercia 0 1 0 species Leclercia adecarboxylata 1 443 83655 1408 2 2627398 0 no rank 1 804 1920114 0 Leclercia sp. LSNIH1 species species Leclercia sp. LSNIH3 0 1 604 1920116 Cronobacter genus 1 0 4598 8 413496 121 Cronobacter malonaticus species 0 507 1 413503 413502 1 569 species Cronobacter turicensis 0 0 Cronobacter universalis species 535744 611 1 1 615 413501 0 species Cronobacter muytjensii Cronobacter dublinensis species 0 413497 1 561 28141 1 1146 0 species Cronobacter sakazakii 1163710 468 1 Cronobacter condimenti species 0 2619 5 27 1330547 0 1 Kosakonia genus 1 681 283686 species Kosakonia radicincitans 0 1 504 497725 Kosakonia oryzae species 0 208223 850 1 0 species Kosakonia cowanii 0 Kosakonia sacchari species 557 1 1158459 1 0 genus Pluralibacter 10 1330546 2113 3 61647 1267 1 species Pluralibacter gergoviae 0 836 1 1334193 [Enterobacter] lignolyticus species 0 genus 0 1 719 1335483 0 Shimwellia blattae species 563 1 719 genus 0 409304 1 250 species Candidatus Ishikawaella capsulata 0 250 1 168169 1 401618 2 157 1 0 Candidatus Riesia genus 401619 1 156 0 Candidatus Riesia pediculicola species 2460 18 191675 0 no rank 18 2460 84563 clade 0 139 1 1906657 genus 0 1 139 1778262 0 species Candidatus Doolittlea endobia 2 135 1 1906661 0 1 Candidatus Gullanella genus 0 Candidatus Gullanella endobia species 1070130 134 1 genus 0 118 1 1906660 1778264 1 118 Candidatus Mikella endobia species 0 0 clade 199891 114 1 1835721 1 114 secondary endosymbiont of Trabutina mannipara species 0 0 clade 462 4 146507 1 0 Candidatus Hamiltonella genus 122 2 2 568987 0 species Candidatus Hamiltonella defensa 138072 120 1 134287 174 1 secondary endosymbiont of Heteropsylla cubana species 0 species secondary endosymbiont of Ctenarytaina eucalypti 0 166 1 1199245 84564 6 1060 0 clade 6 1060 203804 0 genus 251542 238 1 Candidatus Blochmannia chromaiodes species 0 711328 369 2 0 no rank 0 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 266 1 1 103 1505596 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 Candidatus Blochmannia vafer species 0 251535 1 158 0 Candidatus Blochmannia floridanus species 1 139 203907 0 species Candidatus Blochmannia pennsylvanicus 101534 1 156 1 1682492 2 280 0 1 genus Candidatus Tachikawaea 1410383 279 1 0 species Candidatus Tachikawaea gelatinosa 1 152 1906659 0 genus 1778263 1 152 0 species Candidatus Hoaglandella endobia 0 1 Escherichia genus 114 561 5 7447 Escherichia fergusonii species 0 564 1 399 562 1 5289 species Escherichia coli 0 1499973 1 433 0 Escherichia marmotae species 0 Escherichia albertii species 208962 1 1212 Klebsiella genus 0 1 570 350 10 13264 Klebsiella quasipneumoniae species 0 1463165 804 1 0 Klebsiella variicola species 1 1561 244366 0 no rank 2608929 1358 2 Klebsiella sp. LTGPAF-6F species 0 635 1 1905288 0 Klebsiella sp. M5al species 723 1 1934254 0 Klebsiella michiganensis species 1 1323 1134687 1078 1 548 0 Klebsiella aerogenes species Klebsiella quasivariicola species 0 2026240 1 728 571 2453 1 0 species Klebsiella oxytoca species Klebsiella pneumoniae 0 1 3609 573 4 2283 18 1330545 0 1 Lelliottia genus 1046 1 61646 0 Lelliottia amnigena species 0 Lelliottia jeotgali species 1 500 1907578 Lelliottia nimipressuralis species 0 719 1 69220 2 1906 8 158483 1 0 genus Cedecea Cedecea neteri species 0 1898 1 158822 Raoultella genus 0 1 2288 3 160674 19 Raoultella ornithinolytica species 0 1597 1 54291 Raoultella planticola species 0 575 672 1 123 620 1161 4 1 0 genus Shigella 1 280 623 Shigella flexneri species 0 370 1 2629414 0 no rank 370 1 1813821 species Shigella sp. PAMC 28760 0 0 Shigella dysenteriae species 388 1 622 Enterobacter genus 0 1 22 16132 547 921 2608935 3467 9 0 no rank Enterobacter sp. FY-07 species 0 499 1 1692238 1914861 1 544 0 Enterobacter sp. SA187 species 0 species Enterobacter sp. ODB01 1 409 1827481 0 species Enterobacter sp. 638 1 390 399742 187 1 1977566 0 Enterobacter sp. Crenshaw species Enterobacter sp. CRENT-193 species 0 1 516 2051905 194 1 1868135 0 species Enterobacter sp. HK169 188 1 1560339 Enterobacter sp. E20 species 0 0 Enterobacter sp. R4-368 species 1166130 540 1 0 species group 354276 12 11744 0 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 372 1812935 species Enterobacter hormaechei 1 0 158836 1745 3 2866 1812934 1 633 0 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 1 488 1296536 0 subspecies Enterobacter xiangfangensis 0 Enterobacter cloacae species 1 4832 550 0 Enterobacter ludwigii species 299767 408 1 Enterobacter asburiae species 0 61645 1660 1 0 no rank 854 3 2757714 0 species Enterobacter cloacae complex bacterium 261 1 2027919 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 304 1 2077137 289 1 1915310 species Enterobacter cloacae complex sp. ECNIH7 0 Enterobacter cancerogenus species 0 69218 426 1 0 species Enterobacter kobei 208224 326 1 1048757 69 1 genus 0 species Candidatus Moranella endobia 0 1048758 1 69 10455 14 544 411 Citrobacter genus 0 1 0 Citrobacter farmeri species 67824 1 487 Citrobacter amalonaticus species 0 35703 1 1637 545 1 658 species Citrobacter koseri 0 0 Citrobacter rodentium species 67825 542 1 0 species group 7 5748 1344959 406 1 2077147 0 Citrobacter freundii complex sp. CFNIH3 species 355 1 2077149 Citrobacter freundii complex sp. CFNIH9 species 0 species Citrobacter freundii 0 1 2166 546 67827 1 700 0 species Citrobacter werkmanii Citrobacter freundii complex sp. CFNIH4 species 0 642 1 2077148 0 species Citrobacter freundii complex sp. CFNIH2 540 1 2066049 57706 939 1 0 species Citrobacter braakii no rank 0 2 972 2644389 1702170 598 1 species Citrobacter sp. FDAARGOS_156 0 1920110 1 374 Citrobacter sp. CFNIH10 species 0 39 1903410 11009 20 1 0 Pectobacteriaceae family Brenneria genus 0 1 71655 4 617 2 613 1 1109412 0 species Brenneria goodwinii 32 84565 5 1572 0 1 genus Sodalis 0 Candidatus Sodalis pierantonius species 1 407 1486991 Sodalis praecaptivus species 0 1239307 519 1 0 species Sodalis glossinidius 63612 376 1 species Sodalis endosymbiont of Henestaris halophilus 0 1 238 1929246 6 4452 204037 137 Dickeya genus 0 1 Dickeya dadantii species 0 1 658 204038 Dickeya solani species 0 1345 1 1089444 Dickeya dianthicola species 0 635 1 204039 species Dickeya zeae 0 1 955 204042 Dickeya fangzhongdai species 0 722 1 1778540 Pectobacterium genus 0 1 4329 6 122277 192 0 Pectobacterium parmentieri species 781 1 1905730 1 1391 554 species Pectobacterium carotovorum 0 0 species Pectobacterium atrosepticum 1 657 29471 Pectobacterium wasabiae species 0 55208 504 1 0 species Pectobacterium polaris 1 804 2042057 14 7190 1903412 10 Hafniaceae family 1 0 1 0 Obesumbacterium genus 3 82982 379 2 82983 1 376 0 species Obesumbacterium proteus 203 635 5265 8 0 1 genus Edwardsiella 742 1 1263550 0 Edwardsiella piscicida species 636 1226 1 species Edwardsiella tarda 0 species Edwardsiella ictaluri 0 67780 1 581 species Edwardsiella anguillarum 0 615 1 1821960 1384 2 2676541 no rank 0 0 Edwardsiella sp. EA181011 species 1578828 784 1 1650654 600 1 0 Edwardsiella sp. LADL05-105 species species Edwardsiella hoshinae 0 514 1 93378 Hafnia genus 0 1 568 30 3 1536 1 426 2621980 0 no rank species Hafnia sp. CBA7124 0 1848580 426 1 Hafnia alvei species 0 569 1 1080 0 1 Erwiniaceae family 26 15991 50 1903409 genus 0 2 1523 2100764 1 719 665914 Pantoea gaviniae species 0 0 species Pantoea calida 804 1 665913 0 genus 2871 1 32199 1 2871 9 0 Buchnera aphidicola species 3313 8 91 551 1 0 Erwinia genus 1 704 1619313 Erwinia gerundensis species 0 552 540 1 species Erwinia amylovora 0 1 374 79967 species Erwinia pyrifoliae 0 182337 1 647 0 species Erwinia billingiae species Erwinia tasmaniensis 0 338565 416 1 0 no rank 361 1 2622719 0 species Erwinia sp. Ejp617 1 361 215689 species Candidatus Erwinia sp. ErCipseudotaxifoliae 0 1 180 1922217 genus Pantoea 1 0 53335 281 7241 11 1 1217 470934 0 Pantoea vagans species 0 no rank 2630326 3 2278 species Pantoea sp. PSNIH1 0 535 1 1484158 939 1 1484157 species Pantoea sp. PSNIH2 0 species Pantoea sp. At-9b 0 592316 804 1 1166 1 1654067 0 species group Pantoea agglomerans species 0 549 1 1166 548 1 66269 0 Pantoea stewartii species 638 1 553 Pantoea ananatis species 0 0 species Pantoea alhagi 1891675 517 1 1235990 209 1 Candidatus Pantoea carbekii species 0 species Pantoea rwandensis 0 1076550 387 1 51228 1 452 0 genus 0 species Wigglesworthia glossinidia 51229 1 452 Tatumella genus 0 1 82986 25 541 2 0 Tatumella citrea species 53336 1 516 1903416 417 2 family 0 genus Pragia 1 0 82984 3 2 417 1 414 82985 0 species Pragia fontium no rank 0 2 840 451511 702 28 840 2 Plesiomonas genus 1 0 Plesiomonas shigelloides species 0 1 812 703 Thiotrichales order 0 1 31 11399 72273 6 3 946 135617 0 family genus Thioploca 0 1 297 2 40751 6 Thioploca ingrica species 0 40754 291 1 genus 0 649 1 1021 288004 649 1 Beggiatoa leptomitoformis species 0 2371 12 135616 15 Piscirickettsiaceae family 1 0 2 142 28884 2 genus Hydrogenovibrio 0 1 39765 140 1 0 species Hydrogenovibrio crunogenus 0 1 Cycloclasticus genus 6 34067 590 4 1 214 1329899 0 Cycloclasticus zancles species 2621467 370 2 no rank 0 0 Cycloclasticus sp. PY97N species 1 196 728003 species Cycloclasticus sp. P1 0 1 174 385025 genus 0 1 602 1237 1238 1 602 Piscirickettsia salmonis species 0 2 254 933 0 genus 129 1 92245 species Thiomicrospira aerophila 0 125 1 147268 Thiomicrospira cyclica species 0 0 genus 768 2 40222 1 346 754477 Methylophaga frappieri species 0 0 species Methylophaga nitratireducenticrescens 1 422 754476 5 34064 15 8076 1 0 Francisellaceae family 1 1869285 477 2 1 0 genus Allofrancisella Allofrancisella guangzhouensis species 0 594679 1 476 0 1 Francisella genus 122 262 12 7594 1 352 549298 Francisella halioticida species 0 573570 1 494 Francisella sp. TX077310 species 0 0 species Francisella sp. CA97-1460 1542390 1 671 0 Francisella noatunensis species 1 756 657445 0 species Francisella hispaniensis 622488 1 385 0 Francisella tularensis species 263 1332 1 species Francisella philomiragia 0 1 1621 28110 954 1 489 0 Francisella persica species 1 409 573569 Francisella sp. TX077308 species 0 2610885 963 2 no rank 0 475375 1 365 Francisella sp. MA067296 species 0 1547445 598 1 0 species Francisella sp. FSC1006 1 0 Vibrionales order 24665 43 38 135623 24627 42 641 148 Vibrionaceae family 0 1 1 0 genus Vibrio 19498 30 333 662 55601 559 1 0 species Vibrio anguillarum 270 1 1891919 0 species group Vibrio tubiashii species 0 270 1 29498 8014 10 717610 species group 0 875 1 669 0 species Vibrio harveyi 0 species Vibrio owensii 696485 612 1 670 1006 1 0 species Vibrio parahaemolyticus 691 1196 1 0 Vibrio natriegens species 0 Vibrio jasicida species 766224 498 1 200 1 190895 Vibrio rotiferianus species 0 2315253 1099 2 0 species subgroup Vibrio diabolicus species 0 50719 1 781 150340 1 318 Vibrio antiquarius species 0 680 1201 1 species Vibrio campbellii 0 663 1 1327 0 Vibrio alginolyticus species Vibrio gazogenes species 0 678 1 687 1 796 676 species Vibrio fluvialis 0 Vibrio tritonius species 0 400 1 1435069 1 922 190893 species Vibrio coralliilyticus 0 species Vibrio tasmaniensis 0 423 1 212663 species Vibrio hyugaensis 0 1534743 1 280 0 Vibrio furnissii species 1 614 29494 Vibrio tapetis species 0 1 401 52443 Vibrio mimicus species 0 674 1 856 955 2 2614977 0 no rank 1 517 1116375 Vibrio sp. EJY3 species 0 0 Vibrio sp. 2521-89 species 2014742 438 1 2025808 1 223 0 Vibrio qinghaiensis species 28173 1 579 species Vibrio nigripulchritudo 0 559 1 553239 species Vibrio breoganii 0 1368 1 672 Vibrio vulnificus species 0 0 species Vibrio cholerae 666 816 1 1 452 45658 species Vibrio scophthalmi 0 Grimontia genus 0 1 246861 11 2 507 496 1 673 species Grimontia hollisae 0 1 0 Aliivibrio genus 1767 4 17 511678 0 Aliivibrio salmonicida species 1 519 40269 0 species Aliivibrio wodanis 404 1 80852 0 species Aliivibrio fischeri 668 827 1 1957 4 4 657 1 0 genus Photobacterium 0 species Photobacterium gaetbulicola 1295392 1 676 0 Photobacterium profundum species 1 496 74109 Photobacterium damselae species 0 38293 781 1 750 1 2042066 0 genus 0 Paraphotobacterium marinum species 1 750 1755811 33811 1443 2 no rank 0 599 1 1248727 species endosymbiont of unidentified scaly snail isolate Monju 0 species gamma proteobacterium HdN1 0 844 1 83406 1706369 22 26 6514 Cellvibrionales order 0 1 Halieaceae family 1 0 1706372 8 4 842 18 1217416 3 834 1 0 genus Halioglobus 930806 493 1 species Halioglobus pacificus 0 1 323 930805 Halioglobus japonicus species 0 0 1 Microbulbiferaceae family 10 1706373 1609 5 1599 4 48073 5 Microbulbifer genus 0 1 0 Microbulbifer aggregans species 1 454 1769779 0 Microbulbifer agarilyticus species 1 695 260552 252514 445 1 0 species Microbulbifer thermotolerans 11 2997 1706371 11 Cellvibrionaceae family 1 0 1 2425 2 293 0 1 genus Teredinibacter 2426 292 1 0 Teredinibacter turnerae species 13 10 4 1255 0 1 Cellvibrio genus 2624793 2 815 0 no rank 1 478 1987723 Cellvibrio sp. PSBB006 species 0 Cellvibrio sp. PSBB023 species 0 1945512 337 1 1 427 155077 0 Cellvibrio japonicus species Simiduia genus 0 1 2 444 447467 5 Simiduia agarivorans species 0 439 1 447471 0 genus 1 376 316625 Saccharophagus degradans species 0 376 1 86304 2036021 1 618 0 genus 0 species Agarilytica rhodophyticola 1737490 1 618 Spongiibacteraceae family 0 1 5 1044 1706375 3 1084558 433 1 0 genus Oceanicoccus sagamiensis species 0 716816 1 433 1 630749 2 284 0 1 Spongiibacter genus 1 283 2631504 no rank 0 species Spongiibacter sp. IMCC21906 0 1 283 1620392 324 1 1434050 0 genus 0 species Zhongshania aliphaticivorans 1 324 1470434 68 20999 198 135619 0 1 Oceanospirillales order family 0 382 2 191033 2 382 3 141450 1 0 genus Oleiphilus Oleiphilus messinensis species 0 141451 1 379 Saccharospirillaceae family 0 1 255527 2 4 1085 2 719 3 1445504 1 0 genus Gynuella species Gynuella sunshinyii 0 1 716 1445505 genus 0 364 1 230494 Reinekea forsetii species 0 364 1 1336806 family Hahellaceae 0 1 464 3 224379 1 Hahella genus 1 0 158481 2 463 2 461 1 158327 Hahella chejuensis species 0 224372 34 9 2752 Alcanivoracaceae family 0 1 59753 21 2264 6 genus Alcanivorax 1 0 species Alcanivorax borkumensis 0 166 1 59754 Alcanivorax dieselolei species 0 589 1 285091 0 Alcanivorax xenomutans species 1 535 1094342 1306787 1 771 0 Alcanivorax pacificus species 0 no rank 2638842 182 1 Alcanivorax sp. NBRC 101098 species 0 182 1 1113728 0 1 genus Ketobacter 2 454 3 2025617 1917421 451 1 0 Ketobacter alkanivorans species 1 0 family Halomonadaceae 123 28256 30 11653 0 no rank 114403 452 3 genus 0 114185 17 1 114186 1 17 Candidatus Carsonella ruddii species 0 235572 162 1 0 genus 0 species Candidatus Portiera aleyrodidarum 91844 1 162 0 genus 1495768 1 273 1 273 1495769 0 species Candidatus Evansia muelleri 3 1534 7 504090 1 0 Kushneria genus 1 811 698828 0 Kushneria konosiri species species Kushneria marisflavi 0 157779 1 716 1 0 Halomonas genus 6667 15 106 2745 1 503 507626 0 Halomonas chromatireducens species Halomonas huangheensis species 0 1178482 500 1 475662 723 1 0 Halomonas beimenensis species 0 no rank 3348 8 2609666 213 1 1971364 0 species Halomonas sp. GT 0 Halomonas sp. 'Soap Lake #6' species 216 1 1949203 0 species Halomonas sp. SF2003 1 751 2136172 1610576 352 1 0 Halomonas sp. R57-5 species 1504981 329 1 species Halomonas sp. KO116 0 species Halomonas sp. 'Soap Lake #7' 0 216 1 1962264 0 Halomonas sp. GFAJ-1 species 293 1 1118153 species Halomonas sp. 1513 0 1883416 1 978 1 560 115561 0 Halomonas hydrothermalis species 0 species Halomonas campaniensis 1 248 213554 species Halomonas aestuarii 0 1 679 1897729 1 204286 2 849 1 0 genus Cobetia 848 1 28258 0 Cobetia marina species 0 1 genus Halotalea 8 376488 2 648 376489 640 1 species Halotalea alkalilenta 0 2 792 404432 10 Salinicola genus 1 0 1771309 782 1 0 Salinicola tamaricis species 1 0 genus Chromohalobacter 1 42054 2 588 0 species Chromohalobacter salexigens 158080 1 587 3432 13 135620 25 family Oceanospirillaceae 0 1 1 0 genus Marinomonas 1 28253 1524 4 Marinomonas posidonica species 0 936476 623 1 Marinomonas mediterranea species 0 119864 374 1 196814 526 1 0 no rank Marinomonas sp. MWYL1 species 0 400668 526 1 1 1537406 367 2 0 1 Bacterioplanes genus species Bacterioplanes sanyensis 0 1 366 1249553 1 0 genus Thalassolituus 1 187492 2 245 0 species Thalassolituus oleivorans 187493 1 244 1 0 genus Marinobacterium 2 797 5 48075 Marinobacterium aestuarii species 0 1821621 792 1 1 188907 2 474 1 0 Oleispira genus 0 species Oleispira antarctica 188908 473 1 1920240 4 6 1033 Kangiellaceae family 0 1 Kangiella genus 1 0 5 1029 261963 3 1 258 1144748 species Kangiella sediminilitoris 0 261964 1 308 species Kangiella koreensis 0 0 species Kangiella profundi 1 298 1561924 Kangiella geojedonensis species 0 914150 1 162 order 0 1240482 958 4 4 958 1240483 1 family Orbaceae 0 1 1335631 484 1 genus 0 484 1 1267021 species Frischella perrara 0 473 2 6 1193503 1 0 Gilliamella genus 0 species Gilliamella apicola 1 467 1196095 1 0 order Pasteurellales 30 12677 2 135625 Pasteurellaceae family 1 0 12675 29 712 264 75984 11 4 1558 genus Mannheimia 1 0 0 species Mannheimia varigena 85404 1 682 0 no rank 1 448 2645054 1 448 1432056 species Mannheimia sp. USDA-ARS-USMARC-1261 0 417 1 75985 Mannheimia haemolytica species 0 416916 23 3 1138 Aggregatibacter genus 0 1 0 species Aggregatibacter aphrophilus 637 1 732 0 species Aggregatibacter actinomycetemcomitans 714 478 1 14 697331 2 441 1 0 genus Basfia 427 1 157673 0 [Mannheimia] succiniciproducens species 0 genus 155493 568 1 species Gallibacterium anatis 0 1 568 750 0 genus 1 687 214906 731 1 687 species Histophilus somni 0 3 1146 10 745 0 1 Pasteurella genus 0 species Pasteurella dagmatis 302 1 754 Pasteurella multocida species 0 747 1 834 1 0 genus Haemophilus 3027 6 23 724 species Haemophilus influenzae 0 1 1533 727 0 Haemophilus parainfluenzae species 1 336 729 730 1 549 0 [Haemophilus] ducreyi species 0 no rank 2609962 1 360 species Haemophilus sp. oral taxon 036 0 712310 360 1 species Haemophilus pittmaniae 0 249188 1 226 1 0 genus Actinobacillus 15 713 2053 5 0 species Actinobacillus equuli 718 621 1 715 654 1 Actinobacillus pleuropneumoniae species 0 716 474 1 species Actinobacillus suis 0 Actinobacillus succinogenes species 0 67854 1 289 Glaesserella genus 1 0 807 2 2094023 6 738 1 801 0 Glaesserella parasuis species 1 986 476528 0 genus Bibersteinia trehalosi species 0 986 1 47735 1692040 47 6 1564 Acidiferrobacterales order 1 0 1692041 20 5 1517 Acidiferrobacteraceae family 0 1 831 2 1692042 23 genus Sulfurifustis 1 0 0 species Sulfurifustis variabilis 1 808 1675686 666 2 1744881 9 Sulfuricaulis genus 0 1 657 1 1620215 species Sulfuricaulis limicola 0 135622 153 105 36420 order Alteromonadales 1 0 5 267893 918 6 0 1 Idiomarinaceae family 0 1 Idiomarina genus 5 913 6 135575 135577 1 152 0 species Idiomarina loihiensis 2614829 2 536 no rank 0 329 1 2055892 0 species Idiomarina sp. X4 Idiomarina sp. OT37-5b species 0 2100422 1 207 1096243 219 1 0 Idiomarina piscisalsi species family Pseudoalteromonadaceae 0 1 267888 35 9377 25 102 53246 9342 24 1 0 genus Pseudoalteromonas 0 Pseudoalteromonas haloplanktis species 228 1 447 152297 397 1 Pseudoalteromonas issachenkonii species 0 166935 1 376 0 Pseudoalteromonas translucida species 314281 1 306 0 Pseudoalteromonas tunicata species Pseudoalteromonas tetraodonis species 0 1 369 43659 0 species Pseudoalteromonas arctica 394751 1 337 1 254 28107 0 Pseudoalteromonas espejiana species 1 640 298657 species Pseudoalteromonas spongiae 0 43662 481 1 0 species Pseudoalteromonas piscicida Pseudoalteromonas piratica species 0 1 349 1348114 Pseudoalteromonas agarivorans species 0 311 1 176102 1 225 267375 species Pseudoalteromonas marina 0 288 1 897 species Pseudoalteromonas atlantica 0 194690 5 2010 no rank 0 1514074 1 562 species Pseudoalteromonas sp. NC201 0 0 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 410 1720343 414 1 283699 species Pseudoalteromonas sp. Bsw20308 0 species Pseudoalteromonas sp. SM9913 0 275 1 234831 1761891 349 1 0 species Pseudoalteromonas sp. 13-15 481 1 28109 0 species Pseudoalteromonas nigrifaciens 247523 1 310 species Pseudoalteromonas aliena 0 161398 289 1 species Pseudoalteromonas phenolica 0 1 379 43657 species Pseudoalteromonas luteoviolacea 0 0 Pseudoalteromonas rubra species 382 1 43658 1 0 Alteromonadaceae family 52 72275 29 10827 1 0 Agarivorans genus 2 278 1 261825 Agarivorans gilvus species 0 277 1 680279 1 0 genus Alteromonas 10 3868 52 226 1 534 314275 0 species Alteromonas mediterranea 286 1 287094 Alteromonas addita species 0 0 species Alteromonas macleodii 28108 1 985 1 270 715451 Alteromonas naphthalenivorans species 0 2614992 3 992 no rank 0 Alteromonas sp. RW2A1 species 0 452 1 1917158 1 355 1777491 species Alteromonas sp. Mac1 0 2058133 1 185 0 species Alteromonas sp. MB-3u-76 Alteromonas stellipolaris species 0 233316 447 1 0 species Alteromonas australica 589873 302 1 22 1751872 2 663 0 1 genus Lacimicrobium species Lacimicrobium alkaliphilum 0 1526571 1 641 772 2 89404 0 genus 510 1 300231 0 species Glaciecola nitratireducens 262 1 2618684 no rank 0 Glaciecola sp. 4H-3-7+YE-5 species 0 983545 262 1 1 1621534 279 2 1 0 Paraglaciecola genus 0 species Paraglaciecola psychrophila 1 278 326544 genus Marinobacter 0 1 10 4915 2742 63 330734 1 259 0 Marinobacter psychrophilus species 0 species Marinobacter salinus 1874317 1 495 0 Marinobacter adhaerens species 1033846 500 1 83889 3 1397 no rank 0 466 1 1749259 species Marinobacter sp. LQ44 0 1 246 490759 0 species Marinobacter sp. BSs20148 species Marinobacter sp. CP1 0 1671721 1 685 1 1045 2743 0 Marinobacter hydrocarbonoclasticus species 1 720 1420917 Marinobacter salarius species 0 1 436 1420916 0 Marinobacter similis species 3 863 267892 2 Ferrimonadaceae family 1 0 861 2 44011 11 Ferrimonas genus 1 0 44012 850 1 0 Ferrimonas balearica species family Psychromonadaceae 0 1 267894 1 4 884 883 3 67572 6 Psychromonas genus 0 1 1 391 357794 0 species Psychromonas ingrahamii 486 1 2614957 0 no rank 1 486 314282 0 Psychromonas sp. CNPT3 species Shewanellaceae family 1 0 267890 41 25 10110 1 0 genus Shewanella 181 22 24 10069 454 1 24 0 species Shewanella putrefaciens 260364 1 326 0 species Shewanella marisflavi 0 species Shewanella piezotolerans 1 400 404011 Shewanella oneidensis species 0 219 1 70863 0 species Shewanella sediminis 572 1 271097 60478 604 1 species Shewanella amazonensis 0 1 549 225848 species Shewanella psychrophila 0 no rank 0 196818 1858 6 species Shewanella sp. Pdp11 0 1 298 2059264 60480 1 280 species Shewanella sp. MR-4 0 0 Shewanella sp. ANA-3 species 1 265 94122 351745 238 1 0 species Shewanella sp. W3-18-1 Shewanella sp. MR-7 species 0 437 1 60481 0 Shewanella sp. WE21 species 2029986 340 1 species Shewanella woodyi 0 60961 356 1 Shewanella denitrificans species 0 192073 428 1 0 Shewanella baltica species 62322 1 1229 0 Shewanella violacea species 60217 317 1 0 Shewanella japonica species 513 1 93973 species Shewanella frigidimarina 0 56812 1 286 Shewanella loihica species 0 755 1 359303 2018305 1 243 Shewanella bicestrii species 0 354 1 70864 species Shewanella pealeana 0 1 425 271098 0 Shewanella halifaxensis species 3 518 1 267891 0 1 family Moritellaceae 2 517 4 58050 0 1 genus Moritella 1 513 80854 0 species Moritella viscosa 9 2770 1 267889 0 1 Colwelliaceae family genus Colwellia 0 1 28228 6 6 2330 0 no rank 1429 3 196834 Colwellia sp. PAMC 21821 species 0 1 584 1816219 58049 408 1 0 Colwellia sp. MT41 species 0 Colwellia sp. PAMC 20917 species 1816218 1 437 Colwellia psychrerythraea species 0 28229 430 1 1967665 465 1 0 species Colwellia beringensis 0 1 genus Thalassotalea 2 439 3 1518149 0 Thalassotalea crassostreae species 1763536 1 436 1807140 6 1369 0 class 225057 34 6 1369 order Acidithiobacillales 0 1 1335 5 225058 6 family Acidithiobacillaceae 0 1 1329 4 5 119977 1 0 Acidithiobacillus genus 160808 422 1 0 species Acidithiobacillus ferrivorans species Acidithiobacillus ferrooxidans 0 920 435 1 0 Acidithiobacillus caldus species 33059 1 467 218047 348 28216 454 class Betaproteobacteria 0 1 order Neisseriales 1 0 206351 171 17600 36 96 1499392 8012 13 0 1 Chromobacteriaceae family 0 1 genus Pseudogulbenkiania 16 568394 2 1401 0 no rank 2642558 1385 1 1 1385 748280 species Pseudogulbenkiania sp. NH8B 0 1 0 Laribacter genus 19 168470 1022 2 1003 1 168471 0 species Laribacter hongkongensis 7 187 779 2 1 0 genus Aquaspirillum 0 no rank 2620219 1 772 1938604 772 1 Aquaspirillum sp. LM1 species 0 90153 4 3874 0 no rank 3874 4 48 535 0 1 Chromobacterium genus no rank 0 1 1053 2641838 1 1053 2059672 Chromobacterium sp. ATCC 53434 species 0 0 Chromobacterium vaccinii species 1 1639 1108595 0 species Chromobacterium violaceum 1134 1 536 0 1 Jeongeupia genus 840 2 9 885864 2619593 1 831 0 no rank 0 species Jeongeupia sp. USM3 831 1 1906741 481 74 9417 22 family Neisseriaceae 1 0 Eikenella genus 1 0 502 2 538 11 Eikenella corrodens species 0 539 491 1 259 2 1 71 1 0 Simonsiella genus 72 1 258 0 species Simonsiella muelleri 1193515 1 655 genus 0 1 655 1196083 0 Snodgrassella alvi species 1 339 421605 0 no rank species Neisseriaceae bacterium DSM 100970 0 2052837 339 1 genus Neisseria 0 1 482 153 12 6887 630 1 486 0 species Neisseria lactamica 490 536 1 species Neisseria sicca 0 0 Neisseria weaveri species 28091 346 1 485 1 419 0 Neisseria gonorrhoeae species species Neisseria zoodegmatis 0 326523 1 302 1 561 495 0 Neisseria elongata species 2623750 2 1283 0 no rank species Neisseria sp. 10022 0 1 472 1853276 0 species Neisseria sp. KEM232 1 811 655307 0 Neisseria mucosa species 1 507 488 0 Neisseria meningitidis species 1 1660 487 490 1 1853278 0 Neisseria sp. 10023 species 0 1 genus Vitreoscilla 701 3 8 59 213 1 2627922 no rank 0 species Vitreoscilla sp. C1 0 1 213 96942 0 species Vitreoscilla filiformis 63 1 480 0 no rank 1016 2 33809 0 Betaproteobacteria bacterium GR16-43 species 1904640 1 809 species beta proteobacterium CB 0 207 1 543913 1 0 order Burkholderiales 1507 80840 231 175046 119060 461 69787 83 family Burkholderiaceae 0 1 genus 0 334 1 2571159 1 334 412963 Paraburkholderia rhizoxinica species 0 32008 1925 36650 41 genus Burkholderia 1 0 2613784 11 7377 0 no rank 0 Burkholderia sp. CCGE1001 species 640510 839 1 0 species Burkholderia sp. CCGE1003 567 1 640512 939 1 758796 0 Burkholderia sp. RPE67 species 0 Burkholderia sp. YI23 species 1 796 1097668 species Burkholderia sp. Bp7605 0 1740163 697 1 species Burkholderia sp. HB1 0 764 1 1678678 0 species Burkholderia sp. 2002721687 1 628 1468409 Burkholderia sp. KJ006 species 0 1 551 416344 species Burkholderia sp. PAMC 28687 0 565 1 1795874 1740162 1 564 species Burkholderia sp. Bp5365 0 0 Burkholderia sp. PAMC 26561 species 1 467 1795043 0 species Burkholderia gladioli 28095 1 1549 species group 0 5466 7 111527 507 1 1637841 species Burkholderia sp. MSMB0852 0 0 Burkholderia thailandensis species 1279 1 57975 342113 1 730 species Burkholderia oklahomensis 0 species Burkholderia mallei 0 13373 1 553 Burkholderia sp. MSMB617WGS species 0 1637831 467 1 species Burkholderia sp. MSMB0266 0 501 1 1637837 Burkholderia pseudomallei species 0 1429 1 28450 337 1 1690 0 species Burkholderia glumae 996 1 41899 0 species Burkholderia plantarii species group 0 19 17647 87882 152480 796 1 species Burkholderia ambifaria 0 87883 1 1400 0 species Burkholderia multivorans species Burkholderia seminalis 0 488731 1 516 [Pseudomonas] mesoacidophila species 0 265293 1 458 1 589 488729 Burkholderia metallica species 0 0 species Burkholderia territorii 1503055 378 1 152500 546 1 species Burkholderia dolosa 0 60550 354 1 Burkholderia pyrrocinia species 0 488446 1 534 species Burkholderia latens 0 Burkholderia stabilis species 0 986 1 95485 0 Burkholderia diffusa species 346 1 488732 571 1 1207504 species Burkholderia pseudomultivorans 0 0 species Burkholderia contaminans 494 1 488447 0 Burkholderia cenocepacia species 95486 2730 1 0 species Burkholderia stagnalis 1503054 514 1 893 1 482957 Burkholderia lata species 0 0 Burkholderia vietnamiensis species 60552 1 911 292 1 2974 species Burkholderia cepacia 0 101571 1 1657 species Burkholderia ubonensis 0 Paraburkholderia genus 1 0 12 8796 1822464 189 Paraburkholderia hospita species 0 809 1 169430 species Paraburkholderia phymatum 0 1 790 148447 0 Paraburkholderia xenovorans species 1 745 36873 0 Paraburkholderia fungorum species 721 1 134537 2026199 735 1 Paraburkholderia aromaticivorans species 0 1 692 261302 0 species Paraburkholderia phytofirmans 0 Paraburkholderia terrae species 1 698 311230 species Paraburkholderia caribensis 0 1195 1 75105 1 821 252970 Paraburkholderia phenoliruptrix species 0 species Paraburkholderia sprentiae 0 948107 830 1 1 571 2615204 0 no rank species Paraburkholderia sp. SOS3 0 1 571 1926494 Ralstonia genus 1 0 48736 168 7098 5 1 1088 105219 0 species Ralstonia mannitolilytica 190721 1 996 species Ralstonia insidiosa 0 0 Ralstonia pickettii species 1 1859 329 2987 1 305 0 Ralstonia solanacearum species 224 93217 10 5826 0 1 genus Pandoraea 1 571 93218 species Pandoraea apista 0 0 Pandoraea thiooxydans species 1 491 445709 Pandoraea pulmonicola species 0 1 634 93221 0 species Pandoraea oxalativorans 680 1 573737 Pandoraea norimbergensis species 0 93219 683 1 species Pandoraea pnomenusa 0 93220 752 1 species Pandoraea vervacti 0 552 1 656178 656179 1 574 0 species Pandoraea faecigallinarum Pandoraea sputorum species 0 1 665 93222 44013 543 3 genus 0 576610 1 107 0 species Polynucleobacter necessarius 280 1 576611 0 species Polynucleobacter asymbioticus 0 species Polynucleobacter duraquae 1835254 1 156 0 genus 1827195 1 774 Burkholderia sp. RPE64 species 0 774 1 758793 0 1 Cupriavidus genus 411 106589 9 9305 367825 1 1166 species Cupriavidus sp. USMAA1020 0 0 species Cupriavidus pinatubonensis 756 1 248026 1019 1 68895 Cupriavidus basilensis species 0 2640874 2 2385 0 no rank 1264 1 1389192 0 Cupriavidus sp. USMAHM13 species 0 species Cupriavidus sp. USMAA2-4 1 1121 876364 106590 1716 1 0 Cupriavidus necator species 0 species Cupriavidus gilardii 82541 776 1 species Cupriavidus metallidurans 0 119219 1076 1 42 31436 506 228 Alcaligenaceae family 1 0 1 0 Orrella genus 1031 2 19 1921582 Orrella dioscoreae species 0 1012 1 1851544 455 517 17 13898 0 1 Bordetella genus no rank 0 1 860 2630031 species Bordetella sp. H567 0 1697043 860 1 species Bordetella pertussis 0 520 684 1 Bordetella flabilis species 0 1 934 463014 463024 1 823 species Bordetella genomosp. 6 0 94624 1 706 species Bordetella petrii 0 1331258 735 1 species Bordetella pseudohinzii 0 972 1 1416806 Bordetella genomosp. 8 species 0 382 1 35814 0 Bordetella holmesii species 1017 1 463025 0 species Bordetella bronchialis 889 1 463040 Bordetella genomosp. 13 species 0 888 1 1416803 Bordetella genomosp. 9 species 0 species Bordetella avium 0 521 1 459 519 839 1 0 Bordetella parapertussis species 0 species Bordetella hinzii 103855 952 1 123899 837 1 0 species Bordetella trematum 1466 1 518 0 Bordetella bronchiseptica species 498 2 2 305976 1 0 Pusillimonas genus 1 496 2640016 0 no rank Pusillimonas sp. T7-7 species 0 1 496 1007105 genus 0 1 160 1100891 Paenalcaligenes hominis species 0 1 160 643674 3 825 1 29574 1 0 Taylorella genus 84590 1 302 0 species Taylorella asinigenitalis 29575 522 1 species Taylorella equigenitalis 0 0 1 genus Oligella 618 2 4 90243 species Oligella urethralis 0 1 614 90245 36 359336 2 942 0 1 genus Castellaniella 75697 1 906 Castellaniella defragrans species 0 0 1 genus Alcaligenes 1114 2 2 507 0 Alcaligenes faecalis species 1112 1 511 348 1 1472344 genus 0 species Basilea psittacipulmonis 0 1 348 1472345 10956 6 431 222 0 1 genus Achromobacter Achromobacter spanius species 0 1938 1 217203 32002 1 2170 0 species Achromobacter denitrificans 85698 4441 1 0 Achromobacter xylosoxidans species 1 1031 2626865 0 no rank 1031 1 1758194 0 Achromobacter sp. AONIH1 species 945 1 217204 0 Achromobacter insolitus species Advenella genus 1 0 3 818 290425 16 0 Advenella kashmirensis species 310575 369 1 Advenella mimigardefordensis species 0 1 433 302406 family Oxalobacteraceae 1 0 75682 142 28 21123 genus Massilia 1 0 6 5584 149698 185 0 species Massilia putida 1141883 1172 1 species Massilia sp. ZMN-3 0 1 1319 2072590 0 Massilia sp. B2 species 1 866 2045208 0 no rank 2609279 2042 2 1678028 1005 1 0 Massilia sp. NR 4-1 species 1037 1 1707785 species Massilia sp. WG5 0 846 1 2083 0 genus 847 1 2083 0 species Oxalobacter formigenes 1 0 genus Collimonas 4 2806 74 202907 279113 1 796 0 Collimonas pratensis species species Collimonas arenae 0 279058 1046 1 158899 1 890 Collimonas fungivorans species 0 5137 6 192 963 0 1 genus Herbaspirillum 0 no rank 1 600 2624150 1 600 2025949 Herbaspirillum sp. meg3 species 0 0 Herbaspirillum hiltneri species 341045 1 751 Herbaspirillum seropedicae species 0 964 1155 1 1037 1 80842 0 species Herbaspirillum rubrisubalbicans species Herbaspirillum frisingense 0 92645 1 1402 Herminiimonas genus 1 0 303379 14 3 795 1 371 204773 species Herminiimonas arsenicoxydans 0 1809410 1 410 Herminiimonas arsenitoxidans species 0 4576 7 29580 52 Janthinobacterium genus 0 1 1077 1 368607 0 Janthinobacterium svalbardensis species 1 726 55508 0 species Janthinobacterium agaricidamnosum 0 no rank 4 2721 2610881 1938606 1 837 0 species Janthinobacterium sp. LM6 0 Janthinobacterium sp. B9-8 species 1236179 1 423 375286 491 1 0 Janthinobacterium sp. Marseille species species Janthinobacterium sp. 1_2014MBL_MicDiv 0 1644131 970 1 Comamonadaceae family 1 0 39756 58 80864 601 2 1497 201096 11 genus Alicycliphilus 1 0 179636 1486 1 0 species Alicycliphilus denitrificans 1 885 2678886 genus 0 Melaminivora sp. SC2-7 species 0 885 1 2116657 Limnohabitans genus 0 1 663 3 665874 7 656 2 2626134 no rank 0 species Limnohabitans sp. 63ED37-2 0 1 314 1678128 0 species Limnohabitans sp. 103DPR2 1678129 1 342 571 2 364316 1 genus Verminephrobacter 0 1 species Verminephrobacter eiseniae 0 364317 570 1 0 genus 2490452 2 1004 0 Comamonadaceae bacterium B1 species 1458426 1 610 1 394 1458425 0 Comamonadaceae bacterium A1 species 154 80865 5439 5 1 0 genus Delftia 0 Delftia tsuruhatensis species 1 1344 180282 no rank 0 2561 2 2613839 0 species Delftia sp. Cs1-4 742013 1283 1 0 Delftia sp. HK171 species 1 1278 1920191 0 Delftia acidovorans species 1 1380 80866 5 3024 27 28065 0 1 genus Rhodoferax 569 1 1484693 0 Rhodoferax saidenbachensis species 0 Rhodoferax ferrireducens species 1 553 192843 1 1067 1842727 species Rhodoferax koreense 0 species Rhodoferax antarcticus 0 1 808 81479 genus 0 1436289 437 1 0 species Candidatus Symbiobacter mobilis 1436290 437 1 238749 8 2 736 genus Diaphorobacter 0 1 Diaphorobacter polyhydroxybutyrativorans species 0 1546149 728 1 3180 4 10 283 0 1 genus Comamonas 1597 1 285 Comamonas testosteroni species 0 885 1 1082851 0 species Comamonas serinivorans 225992 1 688 0 Comamonas kerstersii species 0 1 Hydrogenophaga genus 4 2341 49 47420 2610897 2 1720 no rank 0 795665 984 1 0 Hydrogenophaga sp. PBC species species Hydrogenophaga sp. RAC07 0 736 1 1842537 Hydrogenophaga crassostreae species 0 572 1 1763535 1349 3 52972 8 Polaromonas genus 1 0 707 1 216465 0 species Polaromonas naphthalenivorans no rank 0 1 634 2638319 634 1 296591 Polaromonas sp. JS666 species 0 1 0 genus Simplicispira 4 352450 2 656 2109915 652 1 Simplicispira sp. SC1-8 species 0 5 5866 34072 94 Variovorax genus 1 0 2 1812 663243 0 no rank 1795631 1 547 species Variovorax sp. PAMC 28711 0 2126319 1 1265 0 Variovorax sp. PMC12 species species Variovorax boronicumulans 0 436515 1 1170 1 2790 34073 species Variovorax paradoxus 0 Ramlibacter genus 0 1 174951 21 2 2012 Ramlibacter tataouinensis species 0 1 1991 94132 3 1503 219181 10 Ottowia genus 1 0 2109914 1 809 Ottowia sp. KADR8-3 species 0 684 1 2645081 no rank 0 0 Ottowia sp. oral taxon 894 species 1658672 684 1 2 887 15 1649468 1 0 Melaminivora genus no rank 0 2641902 1 872 0 species Melaminivora sp. SC2-9 2109913 1 872 Acidovorax genus 0 1 7105 9 12916 195 1 760 721785 species Acidovorax ebreus 0 1 1133 80869 0 species Acidovorax citrulli 80867 1 1049 0 species Acidovorax avenae no rank 0 3447 4 2684926 0 Acidovorax sp. JS42 species 232721 1 734 Acidovorax sp. KKS102 species 0 963 1 358220 0 Acidovorax sp. T1 species 833 1 1858609 Acidovorax sp. RAC01 species 0 1842533 917 1 1 521 553814 species Acidovorax sp. NA3 0 no rank 0 224471 9549 17 413882 1 860 0 [Polyangium] brachysporum species genus Rubrivivax 0 1 28067 45 2 1559 Rubrivivax gelatinosus species 0 1 1514 28068 40 65047 1056 2 0 1 Mitsuaria genus 0 no rank 2648776 1016 1 0 Mitsuaria sp. 7 species 1 1016 1658665 1140 2 15 32012 0 1 genus Thiomonas 0 Thiomonas intermedia species 926 1125 1 0 1 genus Methylibium 2 815 15 316612 1 800 105560 0 Methylibium petroleiphilum species 0 1 Roseateles genus 21 93681 2 1130 Roseateles depolymerans species 0 76731 1 1109 Leptothrix genus 0 1 2 1038 88 17 0 species Leptothrix cholodnii 34029 1021 1 0 1 Rhizobacter genus 30 212743 1139 2 946333 1 1109 species Rhizobacter gummiphilus 0 11 318147 812 2 0 1 genus Paucibacter no rank 0 801 1 2642959 0 species Paucibacter sp. KCTC 42545 801 1 1768242 0 no rank 80841 2 1888 0 Burkholderiales bacterium GJ-E10 species 1469502 1 692 1834205 1196 1 0 Burkholderiales bacterium YL45 species 9669 44 32003 59 Nitrosomonadales order 1 0 24 90627 1156 5 1 0 Gallionellaceae family Gallionella genus 1 0 96 6 2 507 370405 1 501 0 species Gallionella capsiferriformans 625 2 314343 14 genus Sideroxydans 0 1 0 species Sideroxydans lithotrophicus 1 611 63745 14 2444 32011 12 Methylophilaceae family 0 1 81682 11 3 750 genus Methylovorus 1 0 no rank 0 2634027 358 1 358 1 887061 species Methylovorus sp. MP688 0 381 1 266009 Methylovorus glucosotrophus species 0 0 1 Candidatus Methylopumilus genus 3 424 1 1679002 1581680 1 103 Candidatus Methylopumilus turicensis species 0 species Candidatus Methylopumilus planktonicus 0 1 320 1581557 359407 3 570 3 genus Methylotenera 0 1 species Methylotenera versatilis 0 1055487 1 339 0 species Methylotenera mobilis 228 1 359408 406 2 8 404 1 0 Methylobacillus genus species Methylobacillus flagellatus 0 405 1 398 1 16 2 282 1 0 genus Methylophilus 2630143 1 281 no rank 0 281 1 1662285 Methylophilus sp. TWE2 species 0 1 0 Nitrosomonadaceae family 30 206379 2931 12 Nitrosospira genus 0 1 1014 4 35798 2 0 species Nitrosospira briensis 35799 389 1 Nitrosospira multiformis species 0 1231 1 296 species Nitrosospira lacus 0 1288494 327 1 genus Nitrosomonas 0 1 914 4 1887 7 44574 284 1 0 species Nitrosomonas communis species Nitrosomonas europaea 0 364 1 915 Nitrosomonas eutropha species 0 1 299 916 653 2 2609265 0 no rank 0 species Nitrosomonas sp. Is79A3 261292 1 285 1 368 153948 Nitrosomonas sp. AL212 species 0 0 Nitrosomonas ureae species 44577 283 1 0 family 2772226 4 996 Sulfuriferula genus 1 0 620 2 1778653 6 614 1 2637784 no rank 0 0 Sulfuriferula sp. AH1 species 1985873 614 1 genus Sulfuricella 1 0 376 2 935200 10 0 Sulfuricella denitrificans species 649841 366 1 2008793 37 5 1514 Sterolibacteriaceae family 1 0 21 1054211 2 849 0 1 Sulfuritalea genus 828 1 748811 0 species Sulfuritalea hydrogenivorans 0 1 genus Methyloversatilis 2 628 23 378210 0 no rank 2639971 1 605 1842540 605 1 species Methyloversatilis sp. RAC08 0 Thiobacillaceae family 0 1 2008790 12 569 3 919 12 2 557 Thiobacillus genus 1 0 0 Thiobacillus denitrificans species 545 1 36861 119066 2191 12 no rank 0 1301080 52 1 genus 0 0 species Candidatus Nasuia deltocephalinicola 1160784 52 1 6 327159 705 2 0 1 genus Candidatus Accumulibacter 327160 1 699 0 Candidatus Accumulibacter phosphatis species 189384 1 43 genus 0 1 43 189385 0 species Candidatus Tremblaya princeps 1213 6 8 33055 0 1 Kinetoplastibacterium genus 261 1 994695 0 Candidatus Kinetoplastibacterium galatii species species Candidatus Kinetoplastibacterium oncopeltii 0 994696 1 134 233181 1 204 0 species Kinetoplastibacterium blastocrithidii Candidatus Kinetoplastibacterium crithidii species 0 33056 247 1 Candidatus Kinetoplastibacterium desouzaii species 0 994692 359 1 2 178 1381133 1 Candidatus Profftella genus 0 1 0 Candidatus Profftella armatura species 177 1 669502 180 206389 12071 22 0 1 Rhodocyclales order 659 3 2008795 7 family Azonexaceae 0 1 genus Dechloromonas 1 0 2 652 73029 5 259537 647 1 Dechloromonas aromatica species 0 0 1 Rhodocyclaceae family 57 75787 2581 6 no rank 0 75788 1 583 1898103 583 1 Rhodocyclaceae bacterium species 0 0 1 Azospira genus 1170 2 25 146937 146939 1 1145 0 Azospira oryzae species 2 771 551759 12 Aromatoleum genus 0 1 0 species Aromatoleum aromaticum 1 759 551760 8651 12 2008794 206 Zoogloeaceae family 0 1 0 1 genus Thauera 130 33057 6 4870 Thauera humireducens species 0 1134435 1 1073 2205 2 2609274 no rank 0 2005884 1 1070 0 Thauera sp. K11 species species Thauera sp. MZ1T 0 85643 1135 1 0 Thauera chlorobenzoica species 96773 1 700 Thauera aromatica species 0 59405 762 1 12960 103 3575 5 Azoarcus genus 0 1 2629479 2 1926 no rank 0 species Azoarcus sp. KH32C 0 748247 1 1000 species Azoarcus sp. CIB 0 198107 926 1 2067960 1 793 0 Azoarcus sp. SY39 species 753 1 418699 0 Azoarcus olearius species 237169 546 917 28211 0 1 class Alphaproteobacteria 82117 2557 8 0 no rank 2 484 62654 0 clade 484 2 4 767891 0 1 Candidatus Puniceispirillum genus 767892 480 1 Candidatus Puniceispirillum marinum species 0 1 0 Polymorphum genus 590 2 6 991903 1 584 991904 0 Polymorphum gilvum species 2 953 1632780 14 Phreatobacter genus 0 1 0 species Phreatobacter sp. S-12 1 939 1868589 530 2 4 213485 1 0 genus Micavibrio 349221 1 526 Micavibrio aeruginosavorus species 0 1097 5 2800060 0 order 1 0 Hyphomonadaceae family 12 69657 1097 5 genus 0 2723 1 213 2724 213 1 0 species Hirschia baltica genus Hyphomonas 0 1 85 6 3 872 no rank 0 2630699 1 406 1906738 1 406 Hyphomonas sp. Mor2 species 0 0 Hyphomonas neptunium species 1 460 81032 103909 208 918 356 1 0 Rhizobiales order 118882 16 4784 20 Brucellaceae family 1 0 1 0 genus Ochrobactrum 40 528 2190 5 0 species Ochrobactrum pseudogrignonense 419475 1 450 271865 1 545 Ochrobactrum sp. A44 species 0 species Ochrobactrum anthropi 0 529 1 614 Ochrobactrum pituitosum species 0 571256 541 1 genus Brucella 0 1 234 601 14 2578 111 1 235 species Brucella abortus 0 128 1 29461 species Brucella suis 0 Brucella ceti species 0 120577 124 1 29459 73 1 species Brucella melitensis 0 0 species Brucella canis 36855 114 1 Brucella pinnipedialis species 0 120576 118 1 species Brucella ovis 0 1 134 236 0 no rank 2632610 845 4 1885919 286 1 0 Brucella sp. 141012304 species 1149952 1 196 Brucella sp. 09RB8471 species 0 species Brucella sp. 09RB8910 0 1844051 270 1 Brucella sp. 2002734562 species 0 1891098 93 1 444163 100 1 0 species Brucella microti 1 230 981386 species Brucella vulpis 0 Aurantimonadaceae family 0 1 255475 10 3284 7 0 1 Aureimonas genus 7 414371 666 2 no rank 0 659 1 2615206 0 Aureimonas sp. AU20 species 1349819 1 659 293088 89 2608 4 Martelella genus 0 1 0 Martelella endophytica species 693 1 1486262 852 1 2629616 0 no rank 686597 1 852 species Martelella sp. AD-3 0 293089 974 1 0 species Martelella mediterranea 4 1605 2036754 6 family Chelatococcaceae 1 0 Chelatococcus genus 0 1 28209 75 3 1599 531 1 444444 0 species Chelatococcus daeguensis no rank 0 1 993 2638111 species Chelatococcus sp. CO-6 0 993 1 1702325 772 10 3801 18 family Bartonellaceae 0 1 genus Bartonella 0 1 3791 17 773 57 0 Bartonella ancashensis species 192 1 1318743 0 species Bartonella grahamii 33045 187 1 0 Bartonella clarridgeiae species 234 1 56426 1 204 774 0 Bartonella bacilliformis species 0 species Bartonella henselae 1 257 38323 0 species Bartonella quintana 803 1 138 species Bartonella vinsonii 0 94 1 33047 559 1 1686310 0 species Bartonella apis 2645622 6 1470 no rank 0 1933912 216 1 species Bartonella sp. Raccoon60 0 species Bartonella sp. JB63 0 1933907 1 201 201 1 1933906 0 species Bartonella sp. JB15 0 species Bartonella sp. WD16.2 1933904 336 1 1933910 1 202 species Bartonella sp. A1379B 0 314 1 515256 Bartonella sp. 1-1C species 0 1 128 388640 0 Bartonella australis species 85701 271 1 Bartonella tribocorum species 0 Hyphomicrobiaceae family 0 1 45401 66 19 6979 390 2 1068 14 Rhodomicrobium genus 1 0 376 1 1069 species Rhodomicrobium vannielii 0 8 119044 318 2 1 0 genus Filomicrobium 0 Candidatus Filomicrobium marinum species 1608628 1 310 Devosia genus 0 1 2125 4 46913 38 no rank 0 196773 3 2087 1736675 813 1 Devosia sp. A16 species 0 species Devosia sp. H5989 0 1 699 1643450 575 1 2083786 0 Devosia sp. I507 species 59282 21 2 751 genus Blastochloris 1 0 Blastochloris viridis species 0 1079 730 1 2 440 8 1082930 0 1 genus Pelagibacterium 0 species Pelagibacterium halotolerans 531813 432 1 8 81 4 2078 1 0 genus Hyphomicrobium no rank 0 685 1 2619925 species Hyphomicrobium sp. MC1 0 685 1 717785 53399 712 1 0 Hyphomicrobium denitrificans species 1427356 673 1 0 species Hyphomicrobium nitrativorans 29407 17 811 2 genus Rhodoplanes 1 0 no rank 0 2619116 1 794 0 Rhodoplanes sp. Z2-YC6860 species 1 794 674703 Rhizobiaceae family 1 0 52 35926 82115 372 0 1 Shinella genus 2 323620 2 986 984 1 2643062 no rank 0 1 984 879274 Shinella sp. HZN7 species 0 9 7867 227292 no rank 0 0 genus 2 1573 106591 716925 701 1 0 species Ensifer sojae 1 872 106592 species Ensifer adhaerens 0 1 0 Sinorhizobium genus 104 28105 6294 7 382 1280 1 Sinorhizobium meliloti species 0 2 1437 2613772 no rank 0 794846 567 1 species Sinorhizobium sp. CCBAU 05631 0 1842534 870 1 Sinorhizobium sp. RAC02 species 0 0 species group 1 1753 663276 species Sinorhizobium fredii 0 1 1753 380 0 species Sinorhizobium americanum 979 1 194963 0 Sinorhizobium medicae species 110321 1 741 25486 34 227290 0 no rank genus Neorhizobium 0 1 2 1416 1525371 46 0 Neorhizobium galegae species 1370 1 399 1094 379 17687 25 0 1 Rhizobium genus 0 species Rhizobium etli 29449 1 2123 0 Rhizobium leguminosarum species 384 1 3651 no rank 0 7782 19 2613769 825 1 2028343 species Rhizobium sp. 10195 0 0 species Rhizobium sp. TAL182 2020313 1 87 1 613 2048897 0 Rhizobium sp. NXC24 species 1 535 1981173 species Rhizobium sp. NXC14 0 689 1 1571470 Rhizobium sp. ACO-34A species 0 0 Rhizobium sp. Y9 species 1 859 1914541 0 species Rhizobium sp. IRBG74 1 816 424182 0 Rhizobium sp. N113 species 6 1 1703960 Rhizobium sp. N741 species 0 1703967 1 2 0 Rhizobium sp. NT-26 species 1 388 1125847 species Rhizobium sp. N1341 0 1703962 6 1 species Rhizobium sp. Kim5 0 573 1 2020311 Rhizobium sp. CIAT894 species 0 1 443 2020312 72 1 1703961 Rhizobium sp. N1314 species 0 72 1 1703966 0 species Rhizobium sp. N731 Rhizobium sp. S41 species 0 1869170 831 1 0 Rhizobium sp. N324 species 1703969 512 1 1703968 3 1 0 species Rhizobium sp. N871 0 species Rhizobium sp. IE4771 450 1 1301032 Rhizobium tropici species 0 1 747 398 1 1165 396 Rhizobium phaseoli species 0 Rhizobium gallicum species 0 1125 1 56730 0 1 Agrobacterium genus 82 357 7 6383 0 species group 1183400 2 3778 747 1 1176649 Agrobacterium fabrum species 0 1 3031 358 0 species Agrobacterium tumefaciens 1 788 359 Agrobacterium rhizogenes species 0 no rank 0 2 1187 2632611 1842536 1 515 0 Agrobacterium sp. RAC06 species Agrobacterium sp. H13-3 species 0 1 672 861208 1 548 373 species Agrobacterium vitis 0 1 0 Liberibacter genus 6 1215 17 34019 1273132 295 1 Liberibacter crescens species 0 0 Candidatus Liberibacter africanus species 34020 1 91 Candidatus Liberibacter asiaticus species 0 1 171 34021 Candidatus Liberibacter solanacearum species 0 1 381 556287 1 260 309868 0 species Candidatus Liberibacter americanus 4 847 45404 3 Beijerinckiaceae family 1 0 0 genus 475 1 532 0 Beijerinckia indica species 475 1 533 120652 3 369 2 Methylocella genus 1 0 0 species Methylocella silvestris 366 1 199596 1604 6 119042 no rank 0 1 0 Methyloceanibacter genus 4 1484898 2 512 1 508 1384459 Methyloceanibacter caenitepidi species 0 genus Hartmannibacter 1 0 1572860 11 634 2 0 Hartmannibacter diazotrophicus species 623 1 1482074 genus Pseudorhodoplanes 1 0 1734920 7 458 2 1235591 451 1 Pseudorhodoplanes sinuspersici species 0 6 31993 6 1584 1 0 family Methylocystaceae genus Methylosinus 0 1 425 19 2 614 species Methylosinus trichosporium 0 595 1 426 3 964 133 19 Methylocystis genus 1 0 no rank 0 1 517 2625913 species Methylocystis sp. SC2 0 187303 517 1 1 428 655015 species Methylocystis bryophila 0 3 437 119043 5 family Rhodobiaceae 0 1 Parvibaculum genus 1 0 432 2 256616 3 0 Parvibaculum lavamentivorans species 256618 1 429 family Methylobacteriaceae 0 1 119045 44 15 11489 genus Microvirga 0 1 186650 14 907 2 0 Microvirga ossetica species 1882682 893 1 Methylobacterium genus 0 1 9 6738 407 376 763 1 418223 Methylobacterium phyllosphaerae species 0 2615210 2307 3 no rank 0 species Methylobacterium sp. AMS5 0 925818 1 664 0 species Methylobacterium sp. C1 803 1 1479019 Methylobacterium sp. 4-46 species 0 840 1 426117 270351 1 833 species Methylobacterium aquaticum 0 Methylobacterium nodulans species 0 702 1 114616 0 Methylobacterium radiotolerans species 911 1 31998 846 1 334852 species Methylobacterium oryzae 0 0 genus 3800 3 2282523 2002 1 408 0 Methylobacterium extorquens species 1236 1 223967 0 Methylobacterium populi species 0 species Methylobacterium zatmanii 29429 562 1 26 18992 188 41294 1 0 family Bradyrhizobiaceae Bradyrhizobium genus 1 0 374 240 9562 11 no rank 0 6 4845 2631580 0 Bradyrhizobium sp. species 376 737 1 1 926 114615 0 species Bradyrhizobium sp. ORS 278 903 1 1223566 Bradyrhizobium sp. CCGE-LA001 species 0 0 species Bradyrhizobium sp. SK17 2057741 730 1 Bradyrhizobium sp. BTAi1 species 0 288000 820 1 115808 1 729 Bradyrhizobium sp. ORS 285 species 0 1355477 1745 1 0 Bradyrhizobium diazoefficiens species species Bradyrhizobium icense 0 1274631 1 638 0 species Bradyrhizobium japonicum 375 1431 1 663 1 44255 0 species Bradyrhizobium oligotrophicum 4108 2 1073 49 genus Rhodopseudomonas 1 0 4059 1 1076 0 species Rhodopseudomonas palustris 3541 5 85413 45 Bosea genus 1 0 species Bosea vaviloviae 0 1 1098 1526658 2653178 2398 3 0 no rank 1792307 826 1 species Bosea sp. PAMC 26642 0 Bosea sp. AS-1 species 0 685 1 2015316 1842539 1 887 0 Bosea sp. RAC05 species 911 6 586 3 Nitrobacter genus 1 0 species Nitrobacter winogradskyi 0 1 253 913 912 327 1 0 species Nitrobacter hamburgensis 0 1 genus Oligotropha 2 499 4 40136 species Oligotropha carboxidovorans 0 495 1 40137 508 2 10 1649510 1 0 Variibacter genus 1333996 1 498 0 species Variibacter gotjawalensis 0 1 Phyllobacteriaceae family 9132 20 75 69277 2 465 3 28100 0 1 Phyllobacterium genus 1 462 1867719 species Phyllobacterium zundukense 0 245876 11 630 2 Nitratireductor genus 1 0 472175 619 1 0 Nitratireductor basaltis species genus Mesorhizobium 1 0 5905 9 68287 179 1 751 2066070 0 Mesorhizobium japonicum species 0 species Mesorhizobium opportunistum 593909 667 1 536018 1 544 0 Mesorhizobium australicum species 0 Mesorhizobium loti species 381 792 1 0 species Mesorhizobium sp. B7 1670800 568 1 Mesorhizobium amorphae species 0 71433 674 1 39645 1108 1 0 Mesorhizobium ciceri species no rank 0 1 622 325217 622 1 278153 0 species Mesorhizobium sp. WSM1497 1 0 genus Hoeflea 495 2 6 274591 no rank 0 1 489 2614931 1620421 489 1 species Hoeflea sp. IMCC20628 0 Chelativorans genus 1 0 449972 3 2 629 no rank 0 2643807 1 626 0 species Chelativorans sp. BNC1 266779 1 626 genus Aminobacter 1 0 933 2 31988 7 species Aminobacter aminovorans 0 83263 1 926 0 1 Xanthobacteraceae family 30 335928 7 2527 0 1 genus Xanthobacter 14 279 789 2 species Xanthobacter autotrophicus 0 280 775 1 152053 14 2 844 Starkeya genus 0 1 species Starkeya novella 0 921 830 1 864 2 13 6 1 0 Azorhizobium genus 7 1 851 species Azorhizobium caulinodans 0 4 354 22 1191478 1 0 order Magnetococcales 0 1 family Magnetococcaceae 3 332 2 1191479 162171 2 330 2 Magnetococcus genus 0 1 Magnetococcus marinus species 0 1124597 328 1 2800059 2 441 order 0 2 441 2800061 family 0 441 2 3 74317 0 1 genus Maricaulis 0 species Maricaulis maris 438 1 74318 0 1 order Rhodospirillales 309 204441 63 31457 family Acetobacteraceae 1 0 12879 32 433 242 0 1 Gluconobacter genus 1501 3 16 441 species Gluconobacter albidus 0 318683 456 1 442 1029 1 species Gluconobacter oxydans 0 18 434 8 3412 0 1 genus Acetobacter species Acetobacter oryzifermentans 0 1 271 1633874 0 subgenus 151157 436 1 Acetobacter aceti species 0 435 436 1 1107 1 438 species Acetobacter pasteurianus 0 0 species Acetobacter persici 1076596 1 384 0 Acetobacter tropicalis species 1 427 104102 446692 533 1 species Acetobacter senegalensis 0 species Acetobacter pomorum 0 1 236 65959 0 1 genus Gluconacetobacter 5 89583 2 569 564 1 33996 0 species Gluconacetobacter diazotrophicus 0 1 Roseomonas genus 3 1890 45 125216 no rank 0 2617492 1 939 939 1 2018065 0 Roseomonas sp. FDAARGOS_362 species species Roseomonas gilardii 0 906 1 257708 genus Komagataeibacter 1 0 1434011 27 1932 5 1177712 1 235 0 species Komagataeibacter medellinensis 265960 1 445 Komagataeibacter nataicola species 0 284 1 33995 species Komagataeibacter europaeus 0 species Komagataeibacter xylinus 0 28448 1 941 genus Granulibacter 0 1 2 874 364409 8 866 1 364410 species Granulibacter bethesdensis 0 0 genus 1 425 320496 0 Neoasaia chiangmaiensis species 320497 1 425 30 522 1067 3 0 1 Acidiphilium genus 62140 522 1 Acidiphilium multivorum species 0 Acidiphilium cryptum species 0 515 1 524 genus Kozakia 1 0 2 417 153497 1 153496 1 416 0 species Kozakia baliensis 264 1 1602345 0 genus Parasaccharibacter apium species 0 264 1 1510841 91914 1 286 genus 0 91915 286 1 Asaia bogorensis species 0 18269 30 303 41295 1 0 family Rhodospirillaceae 1543704 19 834 2 Niveispirillum genus 0 1 1612173 1 815 0 Niveispirillum cyanobacteriorum species 5 6601 137 191 1 0 Azospirillum genus 0 Azospirillum thiophilum species 1 1493 528244 192 1 2130 0 species Azospirillum brasilense 193 1 2255 Azospirillum lipoferum species 0 0 species Azospirillum humicireducens 1226968 1 586 3846 5 13134 63 genus Magnetospirillum 1 0 0 no rank 1822 2 2617991 1 986 1663591 0 species Magnetospirillum sp. XM-1 Magnetospirillum sp. ME-1 species 0 836 1 1639348 55518 1093 1 0 species Magnetospirillum gryphiswaldense 1 868 84159 0 species Magnetospirillum magneticum Tistrella genus 1 0 1160 2 171436 61 0 species Tistrella mobilis 1099 1 171437 1 0 genus Pararhodospirillum 2 1612157 2 473 Pararhodospirillum photometricum species 0 471 1 1084 1263978 298 1 genus 0 Candidatus Endolissoclinum faulkneri species 0 1263979 298 1 188 2 1804663 4 genus Haematospirillum 0 1 0 species Haematospirillum jordaniae 1549855 1 184 genus Thalassospira 0 1 3 1013 168934 5 species Thalassospira xiamenensis 0 412 1 220697 2048283 596 1 0 species Thalassospira sp. CSC3H3 29 1182780 2 531 0 1 Magnetospira genus 2685734 1 502 no rank 0 0 species Magnetospira sp. QH-2 502 1 1288970 9 1543705 2 1341 0 1 Nitrospirillum genus 0 Nitrospirillum amazonense species 1 1332 28077 3 1681 1081 52 Rhodospirillum genus 0 1 1085 1 565 species Rhodospirillum rubrum 0 1 1064 34018 species Rhodospirillum centenum 0 53 8973 766 33 order Rickettsiales 0 1 1328881 4 224 2 family Candidatus Midichloriaceae 0 1 220 1 411566 0 genus species Candidatus Midichloria mitochondrii 0 234827 1 220 775 27 5168 family 0 4917 25 33988 0 tribe 1 69474 2 702 0 1 genus Orientia species Orientia tsutsugamushi 0 784 1 701 4215 23 520 780 1 0 Rickettsia genus 0 species group 611 2 1129742 Rickettsia bellii species 0 350 1 33990 261 1 788 species Rickettsia canadensis 0 520 2 114292 0 species group 785 1 324 Rickettsia typhi species 0 Rickettsia prowazekii species 0 196 1 782 species group 0 17 2284 114277 35794 23 1 0 Rickettsia slovaca species 297 1 42862 species Rickettsia felis 0 47589 1 103 0 Rickettsia peacockii species 35788 44 1 0 Rickettsia africae species 0 species Rickettsia parkeri 7 1 35792 0 Rickettsia amblyommatis species 33989 172 1 species Rickettsia japonica 0 87 1 35790 0 species Rickettsia massiliae 35791 138 1 783 52 1 Rickettsia rickettsii species 0 1 153 109232 0 Rickettsia monacensis species 33991 103 1 Rickettsia montanensis species 0 172 1 33992 Rickettsia rhipicephali species 0 226665 51 1 0 species Rickettsia heilongjiangensis 1 69 1105106 species Rickettsia philipii 0 50 1 781 species Rickettsia conorii 0 786 263 1 species Rickettsia akari 0 Rickettsia australis species 0 1 500 787 1 280 114295 0 no rank species Rickettsia endosymbiont of Bemisia tabaci 0 337479 280 1 genus Candidatus Phycorickettsia 0 1 2115980 2 251 2 species Candidatus Phycorickettsia trachydisci 0 2115978 249 1 no rank 0 1699067 374 1 0 Rickettsiales bacterium Ac37b species 1528098 374 1 3174 22 942 1 Anaplasmataceae family 1 0 3 188 768 genus 0 0 Anaplasma marginale species 1 67 770 38 1 106179 species group 0 0 Anaplasma phagocytophilum species 948 38 1 1 83 769 0 Anaplasma centrale species 33993 1 4 191 genus Neorickettsia 0 1 33994 56 1 Neorickettsia helminthoeca species 0 951 1 72 0 Neorickettsia sennetsu species species Neorickettsia risticii 0 950 62 1 1586 6 943 7 genus Ehrlichia 1 0 0 no rank 106181 1 205 0 species Ehrlichia sp. HF 1 205 391036 species group 0 1374 4 106178 35795 1 234 0 species Ehrlichia muris 944 362 1 species Ehrlichia canis 0 0 Ehrlichia ruminantium species 779 1 389 Ehrlichia chaffeensis species 0 1 389 945 0 tribe 952 8 1208 1208 8 8 953 0 1 Wolbachia genus 1200 7 2640676 no rank 0 1 128 66084 0 species Wolbachia sp. wRi Wolbachia endosymbiont of Drosophila melanogaster species 0 163164 104 1 Wolbachia endosymbiont of Onchocerca ochengi species 0 88 1 100901 77038 1 332 0 Wolbachia endosymbiont of Drosophila simulans species 246273 1 267 species Wolbachia endosymbiont of Cimex lectularius 0 81 1 77551 0 species Wolbachia endosymbiont of Onchocerca volvulus Wolbachia endosymbiont of Brugia malayi species 0 1 200 80849 61 204458 20 9981 1 0 order Caulobacterales 76892 124 9920 19 family Caulobacteraceae 0 1 1 0 genus Phenylobacterium 846 2 1 20 284016 1 845 0 species Phenylobacterium zucineum 7 76890 597 2 0 1 Asticcacaulis genus 0 species Asticcacaulis excentricus 590 1 78587 4943 6 50 75 1 0 genus Caulobacter 1 727 69395 0 Caulobacter henricii species 688 1 88688 0 species Caulobacter segnis 1643 1 155892 species Caulobacter vibrioides 0 0 Caulobacter mirabilis species 710 1 69666 no rank 0 2648921 1 1125 1 1125 366602 0 Caulobacter sp. K31 species 81440 1 392 0 no rank 1759059 1 392 species Caulobacteraceae bacterium OTSz_A_272 0 41275 76 7 3018 Brevundimonas genus 0 1 1422 3 2622653 0 no rank Brevundimonas sp. GW460-12-10-14-LB2 species 0 531 1 1827469 0 Brevundimonas sp. DS20 species 1532555 464 1 1 427 1938605 species Brevundimonas sp. LM2 0 0 Brevundimonas naejangsanensis species 588932 534 1 species Brevundimonas subvibrioides 0 1 470 74313 Brevundimonas vesicularis species 0 41276 1 516 0 order 255473 3 294 1 0 Parvularculaceae family 1 255474 3 294 Parvularcula genus 0 1 208215 6 2 293 1 287 208216 0 species Parvularcula bermudensis order Rhodobacterales 1 0 204455 261 37927 85 1 0 Rhodobacteraceae family 667 31989 84 37666 0 genus 2211641 541 1 0 species Loktanella vestfoldensis 245188 1 541 0 1 genus Octadecabacter 4 848 1 53945 Octadecabacter antarcticus species 0 1217908 1 289 53946 245 1 0 Octadecabacter arcticus species 1 313 1458307 0 Octadecabacter temperatus species 1759396 2 249 2 Marivivens genus 1 0 0 no rank 2622455 1 247 1920883 1 247 Marivivens sp. JLT3646 species 0 2433 1002 2 genus 0 Roseobacter litoralis species 0 579 1 42443 0 species Roseobacter denitrificans 1 423 2434 1 328 119541 genus 0 441209 328 1 Rhodobaca barguzinensis species 0 0 1 genus Defluviimonas 2 1097466 709 2 1335048 707 1 0 Defluviimonas alba species 302485 41 5 3813 Phaeobacter genus 1 0 0 Phaeobacter porticola species 364 1 1844006 60890 1067 1 species Phaeobacter gallaeciensis 0 221822 1415 1 Phaeobacter inhibens species 0 0 species Phaeobacter piscinae 926 1 1580596 genus Ruegeria 1 0 97050 10 1048 3 Ruegeria pomeroyi species 0 1 728 89184 2625375 1 310 no rank 0 310 1 292414 0 species Ruegeria sp. TM1040 92944 8 871 3 genus Ketogulonicigenium 1 0 0 Ketogulonicigenium vulgare species 492 1 92945 species Ketogulonicigenium robustum 0 1 371 92947 2 588 2 1609958 1 0 genus Confluentimicrobium 2643318 1 586 no rank 0 1609966 586 1 0 Confluentimicrobium sp. EMB200-NS6 species 74032 501 1 genus 0 0 species Antarctobacter heliothermus 74033 1 501 34008 105 2092 4 genus Rhodovulum 0 1 0 no rank 1139 2 2631432 0 species Rhodovulum sp. P5 1 590 1564506 1 549 308754 Rhodovulum sp. MB263 species 0 Rhodovulum sulfidophilum species 0 1 848 35806 genus Paracoccus 0 1 5355 9 265 87 Paracoccus zhejiangensis species 0 656 1 1077935 550 1 2065379 species Paracoccus sp. CBA4604 0 147645 894 1 species Paracoccus yeei 0 34003 561 1 0 species Paracoccus aminophilus 1 673 34004 0 Paracoccus aminovorans species species Paracoccus denitrificans 0 951 1 266 species Paracoccus contaminans 0 1945662 557 1 1 426 246570 0 no rank 0 Paracoccus sp. BM15 species 426 1 1529068 945 2 4 227873 1 0 Pannonibacter genus Pannonibacter phragmitetus species 0 941 1 121719 1717 2 263377 genus 0 1 886 2640570 0 no rank species Yangia sp. CCB-MM3 0 1792508 1 886 species Thiobacimonas profunda 0 831 1 1229727 159345 1 391 genus 0 1 391 159346 species Roseibacterium elongatum 0 0 1 genus Thioclava 2 534 1 285107 1915078 533 1 0 species Thioclava nitratireducens Tateyamaria genus 0 1 299261 1 2 353 1 352 299262 species Tateyamaria omphalii 0 genus Labrenzia 1 0 2028 4 478070 25 1277 2 2648686 0 no rank 1 489 2021862 0 species Labrenzia sp. VG12 Labrenzia sp. CP4 species 0 1674922 1 788 0 species Labrenzia aggregata 726 1 187304 74030 3 364 2 Roseovarius genus 1 0 215743 1 361 species Roseovarius mucosus 0 5 3497 56 1060 0 1 Rhodobacter genus 0 no rank 196779 2 1079 0 Rhodobacter sp. LPB0142 species 413 1 1850250 666 1 2033869 species Rhodobacter sp. CZR27 0 0 species Rhodobacter sphaeroides 1063 1766 1 1061 1 596 0 species Rhodobacter capsulatus 0 no rank 58840 2 941 1 601 2033435 0 species Rhodobacteraceae bacterium QY30 Rhodobacteraceae bacterium species 0 1 340 1904441 60136 1254 2 genus 0 0 species Sulfitobacter pseudonitzschiae 623 1 1402135 631 1 196795 0 no rank species Sulfitobacter sp. AM1-D1 0 1917485 631 1 genus 0 1 896 58842 0 no rank 2624628 896 1 1 896 2009329 0 species Sagittula sp. P11 2 569 309512 2 genus Dinoroseobacter 0 1 1 567 215813 species Dinoroseobacter shibae 0 genus Thalassococcus 0 1 1 436357 1 0 genus Jannaschia 3 188905 2 362 no rank 0 1 359 2645469 Jannaschia sp. CCS1 species 0 1 359 290400 genus Halocynthiibacter 1 0 1579315 1 286 2 1 285 1579316 species Halocynthiibacter arcticus 0 1 178 1284657 genus 0 178 1 1284658 species Planktomarina temperata 0 0 1 Celeribacter genus 5 1888 4 875170 1 405 1758178 0 Celeribacter ethanolicus species 0 Celeribacter indicus species 1208324 719 1 0 species Celeribacter marinus 175 1 1397108 585 1 1411902 0 Celeribacter manganoxidans species 729 2 367771 12 Marinovum genus 0 1 42444 1 717 0 Marinovum algicola species 0 genus 191028 1 701 species Leisingera methylohalidivorans 0 1 701 133924 813 2 360528 4 genus Pelagibaca 0 1 809 1 1250539 species Pelagibaca abyssi 0 1649279 1 607 genus 0 0 Ruegeria mobilis species 379347 1 607 843 5 16 1921002 1 0 Holosporales order 2 286 2100208 1 family Caedimonadaceae 1 0 genus 0 1509243 1 285 285 1 1509244 Candidatus Nucleicultrix amoebiphila species 0 0 family 160 1 1777752 1 160 1521255 genus 0 91604 1 160 0 species Candidatus Paracaedibacter acanthamoebae 1 381 44746 family 0 381 1 204454 0 no rank 0 species endosymbiont of Acanthamoeba sp. UWC8 86106 381 1 36131 82 254 204457 1 0 Sphingomonadales order 59 28541 333 41297 0 1 Sphingomonadaceae family genus Sphingopyxis 1 0 4526 10 165697 87 0 species Sphingopyxis macrogoltabida 1 864 33050 267128 1 501 0 Sphingopyxis granuli species 342 1 33052 0 species Sphingopyxis terrae 0 Sphingopyxis alaskensis species 117207 1 404 1515612 443 1 0 species Sphingopyxis fribergensis 2614943 1885 4 0 no rank species Sphingopyxis sp. MG 0 583 1 1866325 1 551 292913 0 Sphingopyxis sp. 113P3 species 0 Sphingopyxis sp. LPB0140 species 1913578 263 1 488 1 1357916 0 Sphingopyxis sp. QXT-31 species 1 0 genus Sphingomonas 8591 15 182 13687 no rank 0 196159 3457 6 512 1 1938607 0 Sphingomonas sp. LM7 species 794 1 1390395 species Sphingomonas sp. LK11 0 1 604 1327635 0 Sphingomonas sp. Cra20 species 0 Sphingomonas sp. MM-1 species 1 694 745310 1 453 1961362 species Sphingomonas sp. NIC1 0 400 1 1030157 0 species Sphingomonas sp. KC8 0 Sphingomonas taxi species 1549858 572 1 0 species Sphingomonas sanxanigenens 397260 1 745 Sphingomonas panacis species 0 428 1 1560345 1609977 1 600 species Sphingomonas hengshuiensis 0 1 587 93064 0 species Sphingomonas koreensis 483 1 152682 0 Sphingomonas melonis species Sphingomonas wittichii species 0 1 160791 749 1537 2 0 Sphingomonas sp. DC-6 strain 1283312 788 1 17 1434046 823 3 0 1 genus Sphingorhabdus 0 no rank 806 2 2614947 1 452 2077182 0 Sphingorhabdus sp. YGSMI21 species 0 Sphingorhabdus sp. M41 species 1 354 1806885 2 541 2 983 1 0 Zymomonas genus 542 1 981 Zymomonas mobilis species 0 1 0 genus Sphingobium 8266 15 201 165695 6 3203 2611147 0 no rank 1315974 489 1 0 Sphingobium sp. TKS species 1843368 714 1 species Sphingobium sp. RAC03 0 0 Sphingobium sp. SYK-6 species 627192 1 560 518 1 407020 0 Sphingobium sp. MI1205 species 0 Sphingobium sp. YBL2 species 484429 538 1 Sphingobium sp. EP60837 species 0 384 1 1855519 Sphingobium herbicidovorans species 0 427 1 76947 120107 1 607 0 Sphingobium cloacae species 13690 807 1 0 Sphingobium yanoikuyae species 46429 1 833 species Sphingobium chlorophenolicum 0 1332080 497 1 Sphingobium baderi species 0 Sphingobium hydrophobicum species 0 588 1 1673076 1 512 332056 0 species Sphingobium japonicum 591 1 332055 0 species Sphingobium indicum 0 1 Rhizorhabdus genus 9 1649486 2 517 0 Rhizorhabdus dicambivorans species 1 508 1850238 2685927 437 1 genus 0 1921510 1 437 0 Sphingomonas sp. JJ-A5 species genus Blastomonas 0 1 550 2 150203 10 no rank 0 2626550 540 1 species Blastomonas sp. RAC04 0 1 540 1842535 248 1 2709685 0 genus 266812 1 248 0 Sphingorhabdus flavimaris species 0 1 Novosphingobium genus 41 165696 5 2590 no rank 0 660 1 2644732 702113 660 1 0 species Novosphingobium sp. PP1Y 586 1 48935 species Novosphingobium aromaticivorans 0 0 species Novosphingobium resinovorum 673 1 158500 0 Novosphingobium pentaromativorans species 205844 1 630 Citromicrobium genus 0 1 677 2 72173 11 0 no rank 2630544 666 1 666 1 1634516 species Citromicrobium sp. JL477 0 22 7336 116 335929 1 0 family Erythrobacteraceae Croceicoccus genus 0 1 1295327 34 3 871 0 Croceicoccus naphthovorans species 1348774 1 296 0 Croceicoccus marinus species 450378 1 541 2800685 1 364 genus 0 543877 364 1 Altererythrobacter marensis species 0 genus 0 2 832 2800681 502682 1 536 Erythrobacter gangjinensis species 0 1648404 296 1 species Erythrobacter atlanticus 0 1171 4 43 361177 0 1 Altererythrobacter genus 476157 185 1 0 Altererythrobacter ishigakiensis species 1267766 564 1 0 Altererythrobacter atlanticus species 0 Altererythrobacter epoxidivorans species 379 1 361183 genus 0 1 352 2800682 0 Altererythrobacter namhicola species 645517 352 1 825 2 1855416 genus 0 192812 1 437 species Erythrobacter flavus 0 Erythrobacter seohaensis species 0 1 388 266951 6 1990 2800788 0 no rank 1328 3 1041 27 Erythrobacter genus 0 1 490 1 1112 Porphyrobacter neustonensis species 0 Erythrobacter litoralis species 0 811 1 39960 662 3 21 1111 0 1 Porphyrobacter genus 2683265 2 641 no rank 0 1 359 2023229 0 Porphyrobacter HT-58-2 species 0 species Porphyrobacter sp. LM 6 1896196 282 1 genus 0 2 815 2800686 1982042 379 1 0 species Altererythrobacter mangrovi 692370 436 1 Altererythrobacter dongtanensis species 0 order 0 2288 7 54526 2 1655514 5 1857 0 1 family Pelagibacteraceae 1007 2 1655516 no rank 0 0 species alpha proteobacterium HIMB59 744985 1 340 0 alpha proteobacterium HIMB5 species 859653 1 667 198251 2 848 genus 0 2647897 303 1 no rank 0 303 1 1002672 species Candidatus Pelagibacter sp. IMCC9063 0 species Candidatus Pelagibacter ubique 0 545 1 198252 0 1 genus Candidatus Fonsibacter 431 2 1 2045213 0 Candidatus Fonsibacter ubiquis species 1 430 1925548 phylum 0 200918 41 11676 1 0 Thermotogae class 11676 41 9 188708 1 0 order Thermotogales 7 2419 7043 28 family Thermotogaceae 0 1 188709 17 3755 17 11 2637 25 2335 1 0 genus Thermotoga 0 Thermotoga profunda species 1 283 1508420 0 species Thermotoga naphthophila 247 1 93930 0 species Thermotoga neapolitana 399 1 2337 0 species Thermotoga caldifontis 157 1 1508419 species Thermotoga maritima 0 1 304 2336 0 no rank 937 4 2631113 0 species Thermotoga sp. 2812B 199 1 1157948 1 329 126738 Thermotoga sp. RQ7 species 0 0 Thermotoga sp. RQ2 species 200 1 126740 Thermotoga sp. Cell2 species 0 1 209 1157947 Thermotoga petrophila species 0 93929 285 1 1643951 13 1101 5 Pseudothermotoga genus 0 1 239 1 177758 0 species Pseudothermotoga lettingae 38322 1 258 0 species Pseudothermotoga elfii 0 species Pseudothermotoga thermarum 238 1 119394 Pseudothermotoga hypogea species 0 1 353 57487 3281 10 1643950 9 Fervidobacteriaceae family 1 0 genus Fervidobacterium 0 1 1154 4 2422 6 species Fervidobacterium islandicum 0 2423 1 372 species Fervidobacterium nodosum 0 2424 1 313 Fervidobacterium pennivorans species 0 93466 1 463 genus Thermosipho 1 0 5 2118 2420 3 2676525 823 2 0 no rank 0 Thermosipho sp. 1063 species 1 409 1462747 1437364 1 414 0 species Thermosipho sp. 1070 833 1 2421 species Thermosipho africanus 0 1 459 46541 species Thermosipho melanesiensis 0 0 order 1643946 5 735 1643948 4 735 5 Kosmotogaceae family 1 0 genus 0 2 543 651456 0 Kosmotoga olearia species 651457 288 1 1330330 255 1 species Kosmotoga pacifica 0 genus Mesotoga 0 1 188 2 1184396 3 185 1 1184387 Mesotoga prima species 0 1643947 6 7 3889 Petrotogales order 1 0 family 0 1643949 6 3883 genus 0 860 1 1511648 1006576 860 1 0 Defluviitoga tunisiensis species 1 0 Petrotoga genus 2 749 2 28236 69499 1 747 0 Petrotoga mobilis species genus Marinitoga 1 0 3 2274 160798 16 no rank 0 1128 1 2640159 0 species Marinitoga sp. 1137 1128 1 1545835 149715 1130 1 0 species Marinitoga piezophila no rank 0 625 2 2323 clade 0 1783234 2 625 95818 169 1 0 phylum 1 169 1895827 0 no rank 0 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 169 1 2056494 clade 0 1 456 95901 class 0 1 456 2497643 order 0 2497644 1 456 2497645 456 1 0 family 0 genus 1551504 456 1 0 Candidatus Babela massiliensis species 456 1 673862 phylum Elusimicrobia 1 0 74152 2 1490 7 0 no rank 1 298 99260 298 1 167965 species uncultured Termite group 1 bacterium 0 class 0 447830 757 3 3 757 1783344 0 order 1 0 family Endomicrobiaceae 2 1783343 3 757 0 genus 755 2 1408194 285 1 1408204 0 species Candidatus Endomicrobium trichonymphae 1 470 1408281 species Endomicrobium proavitum 0 1 0 Elusimicrobia class 2 433 1 641853 641854 432 1 order 0 641876 1 432 family 0 432 1 423604 0 genus species Elusimicrobium minutum 0 1 432 423605 phylum 0 3 136 2138240 3 136 2138243 0 class 2138246 136 3 order 0 1 0 family Coprothermobacteraceae 136 3 4 2138247 2 132 1 68335 1 0 genus Coprothermobacter 0 Coprothermobacter proteolyticus species 35786 1 131 203691 31340 55 0 phylum 0 1 class Spirochaetia 45 203692 55 31340 1643688 7 2999 0 order family 0 170 2999 7 7 171 2651 6 1 0 Leptospira genus 0 species Leptospira borgpetersenii 174 1 465 352 1 28183 Leptospira santarosai species 0 1051 1 173 0 Leptospira interrogans species 0 Leptospira alstonii species 28452 347 1 172 1 429 0 species Leptospira biflexa 0 genus 1 348 338321 29510 348 1 species Turneriella parva 0 Brachyspirales order 1 0 7 6830 1643686 3 93 143786 6 6827 0 1 family Brachyspiraceae 73 29521 6734 5 1 0 genus Brachyspira Brachyspira pilosicoli species 0 52584 1 2055 0 species Brachyspira intermedia 1 1749 84377 0 species Brachyspira hyodysenteriae 1531 1 159 0 species Brachyspira murdochii 1326 1 84378 0 1 order Spirochaetales 124 136 21466 40 137 82 15938 23 Spirochaetaceae family 1 0 638 1 1616789 genus 0 species Salinispira pacifica 0 1307761 1 638 157 105 12 10338 Treponema genus 0 1 Treponema denticola species 0 158 1 868 81028 1556 1 0 Treponema brennaborense species 1 116 160 species Treponema pallidum 0 167 1 1874 0 species Treponema succinifaciens 0 Treponema caldarium species 215591 1 660 Treponema primitia species 0 1 727 88058 0 Treponema pedis species 409322 1 554 1 1762 221027 0 species Treponema putidum 0 species Treponema azotonutricium 150829 1 729 species Treponema paraluiscuniculi 0 53435 1 142 1 1245 2638727 no rank 0 1539298 1 1245 0 species Treponema sp. OMZ 838 1 0 Sediminispirochaeta genus 934 2 4 1911556 1 930 55206 species Sediminispirochaeta smaragdinae 0 146 2 1767 3 Spirochaeta genus 1 0 0 species Spirochaeta thermophila 154 1 952 46355 813 1 0 Spirochaeta africana species 2179 4 399320 4 Sphaerochaeta genus 1 0 1 725 1131707 0 Sphaerochaeta pleomorpha species 273376 1 604 Sphaerochaeta coccoides species 0 846 1 1131703 species Sphaerochaeta globosa 0 1643685 16 5404 family 0 Borrelia genus 1 0 138 45 8 3576 0 species Borrelia duttonii 40834 396 1 species Borrelia turicatae 0 142 1 654 Borrelia hermsii species 0 1 521 140 0 species Borrelia recurrentis 393 1 44449 species Borrelia anserina 0 227 1 143 0 species Borrelia miyamotoi 811 1 47466 141 1 529 Borrelia parkeri species 0 1 0 Borreliella genus 42 64895 1828 8 1 244 29518 0 Borreliella afzelii species species Borreliella bissettii 0 1 192 64897 0 Borreliella bavariensis species 664662 168 1 0 species Borreliella valaisiana 62088 1 227 Borreliella garinii species 0 29519 1 352 0 Borreliella burgdorferi species 321 1 139 1 282 1674146 species Borrelia mayonii 0 1783270 359 2359105 0 clade 68336 345 2354987 0 clade 0 phylum 21 8692 1090 191410 52 21 8692 class Chlorobia 0 1 191411 62 20 8640 Chlorobiales order 0 1 191412 105 8578 19 Chlorobiaceae family 0 1 366 1 100715 0 genus 1 366 100716 species Chloroherpeton thalassium 0 2258 5 34 1101 1 0 genus Prosthecochloris 0 species Prosthecochloris aestuarii 1 483 1102 no rank 0 3 1741 2632826 0 Prosthecochloris sp. GSB1 species 1 734 281093 1974213 567 1 Prosthecochloris sp. HL-130-GSB species 0 Prosthecochloris sp. CIB 2401 species 0 440 1 1868325 no rank 0 274493 3313 8 4 1099 1481 3 0 1 Pelodictyon genus 606 1 34090 Pelodictyon phaeoclathratiforme species 0 1100 871 1 Pelodictyon luteolum species 0 5 1832 3 1091 0 1 genus Chlorobium 1 646 1096 0 Chlorobium phaeobacteroides species Chlorobium limicola species 0 1092 419 1 1094 1 368 0 species Chlorobium phaeovibrioides 337090 1 396 0 Chlorobium chlorochromatii species 2536 4 256319 23 genus Chlorobaculum 1 0 1 1010 274537 Chlorobaculum limnaeum species 0 1097 1 617 0 Chlorobaculum tepidum species species Chlorobaculum parvum 0 274539 1 886 phylum Bacteroidetes 0 1 2344988 318 976 20 class Cytophagia 0 1 52 38014 768503 76 0 1 order Cytophagales 51 37938 183 768507 2762301 919 2 family 0 genus Marivirga 0 1 869806 20 2 919 0 species Marivirga tractuosa 899 1 1006 family Flammeovirgaceae 0 1 200667 9 2341 3 1 1158 340671 0 no rank 1257021 1158 1 Flammeovirgaceae bacterium 311 species 0 1174 1 59739 genus 0 2637820 1174 1 0 no rank Flammeovirga sp. MY04 species 0 1191459 1174 1 1 0 Amoebophilaceae family 2 1501348 455 3 281119 1 193 0 genus 0 species Candidatus Amoebophilus asiaticus 1 193 281120 genus 0 1 260 273135 no rank 0 1 260 2641185 0 species Cardinium endosymbiont of Encarsia pergandiella 260 1 249402 15 10061 89373 24 Cytophagaceae family 0 1 1 989 861914 0 genus 2620963 989 1 no rank 0 989 1 1834519 0 Fibrella sp. ES10-3-2-2 species genus Dyadobacter 1 0 2 1741 120831 6 1735 1 94254 0 Dyadobacter fermentans species genus Cytophaga 0 1 2 1116 978 1 Cytophaga hutchinsonii species 0 1115 1 985 945 1 319458 genus 0 316068 945 1 species Leadbetterella byssophila 0 genus Spirosoma 0 1 107 130 4152 6 1 850 1211326 0 Spirosoma aerolatum species 0 Spirosoma radiotolerans species 1379870 1 656 species Spirosoma montaniterrae 0 1178516 996 1 2057025 1 758 species Spirosoma sp. HA7 0 0 Spirosoma rigui species 1 762 564064 2 1094 26 105 0 1 genus Runella 0 species Runella slithyformis 1068 1 106 4 1937968 979 2 0 1 Bernardetiaceae family 975 1 1937972 0 genus 0 Bernardetia litoralis species 999 1 975 family 0 1557 2 1853234 genus Persicobacter 1 0 59740 12 2 1557 1 1545 2664020 0 no rank 1085624 1 1545 0 species Persicobacter sp. JZB09 0 1 Hymenobacteraceae family 71 1853232 16 17497 3 3078 12 323449 1 0 Pontibacter genus 0 Pontibacter akesuensis species 1 1336 388950 0 species Pontibacter korlensis 400092 1 1730 106 89966 8 11430 1 0 Hymenobacter genus 1446467 1 1450 Hymenobacter swuensis species 0 1411621 1873 1 0 Hymenobacter sedentarius species 0 no rank 2615202 8001 5 1988 1 1356852 0 Hymenobacter sp. APR13 species 1385663 1084 1 0 Hymenobacter sp. DG25A species Hymenobacter sp. PAMC 26628 species 0 1484118 1990 1 1197 1 1385664 species Hymenobacter sp. DG25B 0 1 1742 1484116 species Hymenobacter sp. PAMC 26554 0 1 0 genus Rufibacter 4 2918 7 1379908 0 no rank 2639626 2 1769 0 Rufibacter sp. DG15C species 1379909 1002 1 1379910 1 767 Rufibacter sp. DG31D species 0 512763 1 1142 0 species Rufibacter tibetensis 0 1 family Cyclobacteriaceae 7 563798 3946 7 genus 0 246875 1 549 1 549 1727163 species Algoriphagus sp. M8-2 0 0 genus 390846 840 1 1 840 390884 0 Echinicola vietnamensis species genus Cyclobacterium 0 1 3 1566 68288 18 104 713 1 species Cyclobacterium marinum 0 Cyclobacterium amurskyense species 0 835 1 320787 1 984 232244 genus 0 1 984 232259 Belliella baltica species 0 class Bacteroidia 0 1 200643 144 2156188 70 58 2149017 501 171549 0 1 order Bacteroidales 0 no rank 185291 1 1534 1400053 1534 1 0 species Bacteroidales bacterium CF 0 1 Paludibacteraceae family 33 2005523 3474 3 5 346096 2 3441 0 1 genus Paludibacter 0 species Paludibacter propionicigenes 185300 3436 1 815 40 11 830076 family Bacteroidaceae 1 0 10 830036 816 34474 genus Bacteroides 0 1 818 1 150869 Bacteroides thetaiotaomicron species 0 97560 1 47678 Bacteroides caccae species 0 1 82635 246787 Bacteroides cellulosilyticus species 0 0 species Bacteroides caecimuris 1796613 95537 1 28119 22331 1 Bacteroides zoogleoformans species 0 0 Bacteroides fragilis species 817 152890 1 28116 142080 1 0 Bacteroides ovatus species 28113 1 22677 0 species Bacteroides heparinolyticus Bacteroides helcogenes species 0 290053 28983 1 7 209846 2005525 114 family Tannerellaceae 0 1 0 1 genus Parabacteroides 3 196058 59 375288 Parabacteroides distasonis species 0 1 58204 823 no rank 0 2649774 1 137795 137795 1 2025876 0 species Parabacteroides sp. CT06 21 195950 3 13674 0 1 Tannerella genus 28112 7883 1 0 species Tannerella forsythia 0 no rank 5770 1 2620507 0 Tannerella sp. oral taxon HOT-286 species 5770 1 712710 93250 5 171550 18 Rikenellaceae family 0 1 genus Alistipes 1 0 91512 2 239759 100 91412 1 214856 species Alistipes finegoldii 0 1 1611681 1720 2 1 0 genus Mucinivorans 1433126 1 1719 Mucinivorans hirudinis species 0 46264 2 1853231 0 family 46264 2 283168 5 Odoribacter genus 0 1 0 species Odoribacter splanchnicus 46259 1 28118 38 171551 4 10139 1 0 Porphyromonadaceae family 43 836 10101 3 0 1 Porphyromonas genus 28123 2658 1 species Porphyromonas asaccharolytica 0 837 1 7400 Porphyromonas gingivalis species 0 family 0 2005520 6 9783 Petrimonas genus 0 1 2 3295 307628 6 0 species Petrimonas mucosa 3289 1 1642646 294702 14 3653 2 genus Proteiniphilum 0 1 3639 1 1642647 0 Proteiniphilum saccharofermentans species 2 2835 2 1784836 0 1 genus Fermentimonas 1562970 2833 1 species Fermentimonas caenicola 0 11 354130 37 171552 0 1 family Prevotellaceae 1 0 genus Prevotella 443 838 354093 10 1 14067 76123 Prevotella enoeca species 0 0 no rank 7777 1 2638335 652716 1 7777 Prevotella sp. oral taxon 299 species 0 0 Prevotella jejuni species 1 36768 1177574 28132 1 43941 species Prevotella melaninogenica 0 Prevotella dentalis species 0 1 30545 52227 589436 35564 1 Prevotella fusca species 0 species Prevotella ruminicola 0 839 1 42583 28131 117332 1 0 species Prevotella intermedia Prevotella denticola species 0 28129 1 25073 515165 5 333046 no rank 0 genus 0 3 514078 909656 species Bacteroides vulgatus 0 821 354014 1 1 62603 376805 0 species Bacteroides salanitronis 0 species Bacteroides dorei 357276 1 97461 1 0 genus Candidatus Azobacteroides 1 511434 2 1087 1086 1 511435 species Candidatus Azobacteroides pseudotrichonymphae 0 0 family 2005519 2 74855 0 1 genus Barnesiella 2 74855 12 397864 species Barnesiella viscericola 0 397865 1 74843 0 1 Marinilabiliales order 3 1970189 7027 11 1471398 5 3 2445 family Prolixibacteraceae 0 1 2 2440 1471399 3 Draconibacterium genus 0 1 0 Draconibacterium orientale species 2437 1 1168034 1970190 34 1726 3 family Salinivirgaceae 0 1 0 1 Salinivirga genus 1692 2 4 1970191 0 species Salinivirga cyanobacteriivorans 1 1688 1307839 0 family 1722 1 1573805 2060722 1 1722 0 genus 0 species Marinifilaceae bacterium SPP2 1717717 1 1722 0 1 Marinilabiliaceae family 38 558415 1131 3 1193324 1 2 1093 Alkalitalea genus 1 0 889453 1092 1 species Alkalitalea saponilacus 0 1 0 class Sphingobacteriia 18226 23 74 117747 0 1 Sphingobacteriales order 18152 22 16 200666 18136 21 21 84566 1 0 Sphingobacteriaceae family 423349 32 2812 4 genus Mucilaginibacter 0 1 907 1 1234841 Mucilaginibacter sp. BJC16-A31 species 0 1 897 2617802 0 no rank 0 species Mucilaginibacter sp. PAMC 26640 897 1 1300914 976 1 1550579 species Mucilaginibacter gotjawali 0 2 1049 5 1649482 0 1 Pseudopedobacter genus 1 1044 151895 0 species Pseudopedobacter saltans no rank 0 1 1128 84568 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 0 1986952 1128 1 genus Sphingobacterium 1 0 6245 6 28453 19 1010 1070 1 Sphingobacterium mizutaii species 0 2609468 4 5156 no rank 0 0 species Sphingobacterium sp. ML3W 1538644 1270 1 1933220 1416 1 0 species Sphingobacterium sp. B29 2003121 1 1394 0 Sphingobacterium sp. G1-14 species 743722 1 1076 Sphingobacterium sp. 21 species 0 929509 1 1137 genus 0 species Solitalea canadensis 0 1137 1 995 14 84567 6 5744 1 0 genus Pedobacter 984 990 1 0 Pedobacter heparinus species 430522 1 1363 0 Pedobacter steynii species 0 Pedobacter ginsengisoli species 363852 811 1 species Pedobacter cryoconitis 0 188932 1384 1 1182 1 2628915 no rank 0 species Pedobacter sp. PACM 27299 0 1727164 1 1182 class Flavobacteriia 0 1 116843 143 117743 52 Flavobacteriales order 1 0 116791 142 200644 81 21 34020 2762318 0 family 32 308865 8768 6 1 0 Elizabethkingia genus 1 995 1756149 Elizabethkingia genomosp. 3 species 0 1458 1 172045 0 species Elizabethkingia miricola 1756150 1 1116 Elizabethkingia genomosp. 4 species 0 1382 1 238 species Elizabethkingia meningoseptica 0 3785 1 1117645 0 Elizabethkingia anophelis species genus 0 622 1 1013 Weeksella virosa species 0 1 622 1014 13000 10 2782232 no rank 0 9 12142 59732 19 genus Chryseobacterium 1 0 species Chryseobacterium gallinarum 0 3236 1 1324352 1265445 1 1293 Chryseobacterium camelliae species 0 1 1043 558152 0 species Chryseobacterium piperi 2593645 3 3259 no rank 0 1 1137 2015076 0 species Chryseobacterium sp. T16E-39 878220 1219 1 0 species Chryseobacterium sp. StRB126 1721091 903 1 species Chryseobacterium sp. IHB B 17019 0 1 2335 253 0 species Chryseobacterium indologenes 0 species Chryseobacterium glaciei 1685010 1 957 858 1 2782228 genus 0 536441 1 858 species Chryseobacterium taklimakanense 0 1 0 genus Riemerella 2 3541 3 34084 0 species Riemerella anatipestifer 34085 1 3538 Ornithobacterium genus 0 1 28250 88 2 8089 Ornithobacterium rhinotracheale species 0 8001 1 28251 family 0 2 674 1333713 674 2 267986 2 Owenweeksia genus 0 1 253245 672 1 species Owenweeksia hongkongensis 0 family Ichthyobacteriaceae 0 1 1755828 1 2 350 0 genus 1755829 1 349 1 349 242600 Ichthyobacterium seriolicida species 0 313602 602 2 no rank 0 1 521 336809 genus 0 1 521 336810 0 species Candidatus Sulcia muelleri 0 genus 1940138 1 81 0 species Candidatus Walczuchella monophlebidarum 81 1 1415657 Crocinitomicaceae family 1 0 3 757 1853230 5 752 2 2 332102 1 0 Fluviicola genus 0 Fluviicola taffensis species 191579 1 750 470 49546 77807 101 1 0 family Flavobacteriaceae 89 76831 5166 5 1 0 Myroides genus 2642485 2124 2 no rank 0 Myroides sp. A21 species 0 1021 1 1583100 0 species Myroides sp. ZB35 1458492 1 1103 480520 1069 1 0 species Myroides profundi species Myroides odoratimimus 0 76832 1 1884 genus Lacinutrix 0 1 291183 2 4 2255 2 1270 2647285 0 no rank 983544 1 643 Lacinutrix sp. 5H-3-7-4 species 0 627 1 2057808 Lacinutrix sp. Bg11-31 species 0 1 983 1486034 0 Lacinutrix venerupis species Cellulophaga genus 1 0 2705 4 104264 2 1 770 979 0 Cellulophaga lytica species 1136 1 76594 0 species Cellulophaga baltica 797 1 59600 species Cellulophaga algicola 0 0 1 genus Gramella 2 292691 5 3147 1486245 857 1 0 Gramella flava species 1 702 2126553 species Gramella sp. SH35 0 1000 1 411153 0 Gramella forsetii species 1913577 1 586 species Gramella sp. LPB0144 0 0 genus 252306 965 1 Robiginitalea biformata species 0 965 1 252307 genus 0 1 1015 261827 Algibacter alginicilyticus species 0 1015 1 1736674 0 genus 363408 2326 4 0 Nonlabens dokdonensis species 328515 1 501 1 679 319236 0 Nonlabens sediminis species 2615035 1146 2 0 no rank 1476901 1 584 species Nonlabens sp. MIC269 0 Nonlabens sp. MB-3u-79 species 0 1 562 2058134 1589 3 1 111500 0 1 Muricauda genus 0 species Muricauda lutaonensis 599 1 516051 111501 1 989 0 Muricauda ruestringensis species genus Tenacibaculum 0 1 104267 3 3597 5 1 489 107401 0 Tenacibaculum maritimum species Tenacibaculum dicentrarchi species 0 669041 1 865 584609 1357 1 species Tenacibaculum jejuense 0 0 species Tenacibaculum todarodis 1850252 1 883 1024 1 1209327 genus 0 0 species Flavivirga eckloniae 1 1024 1803846 1300 3 1 286104 0 1 Winogradskyella genus 2615021 1299 2 no rank 0 Winogradskyella sp. J14-2 species 0 1 459 1936080 1 840 754409 0 Winogradskyella sp. PG-2 species 0 genus 153265 1 775 species Aequorivita sublithincola 0 775 1 101385 0 1 genus Arenibacter 2 677 1 178469 616991 1 676 species Arenibacter algicola 0 2 417127 2 1080 1 0 genus Zunongwangia 398743 1 1078 species Zunongwangia profunda 0 genus 0 216431 1 592 0 Croceibacter atlanticus species 313588 1 592 1 1136 1518147 genus 0 0 species Wenyingzhuangia fucanilytica 1790137 1 1136 1607 4 16 326319 1 0 genus Dokdonia Dokdonia donghaensis species 0 326320 651 1 940 2 2615033 0 no rank species Dokdonia sp. MED134 0 313590 385 1 555 1 983548 0 Dokdonia sp. 4H-3-7-5 species genus 0 83612 604 1 57029 604 1 Psychroflexus torquis species 0 0 1 Capnocytophaga genus 118 1016 15 18537 0 species Capnocytophaga stomatis 1848904 1296 1 1018 879 1 species Capnocytophaga ochracea 0 0 species Capnocytophaga leadbetteri 327575 1 3386 1 1489 1019 0 Capnocytophaga sputigena species 855 1 28189 Capnocytophaga cynodegmi species 0 no rank 0 2640652 6963 6 species Capnocytophaga sp. H2931 0 1 635 1945657 1 580 1945658 species Capnocytophaga sp. H4358 0 1705617 716 1 Capnocytophaga sp. oral taxon 323 species 0 0 species Capnocytophaga sp. oral taxon 878 1316596 1 3396 209053 1 839 0 Capnocytophaga sp. ChDC OS43 species 0 Capnocytophaga sp. oral taxon 864 species 1 797 1316593 0 Capnocytophaga haemolytica species 971 1 45243 1 969 28188 Capnocytophaga canimorsus species 0 1017 1611 1 Capnocytophaga gingivalis species 0 740 1 393005 0 genus 2069432 1 740 Tamlana sp. UJ94 species 0 Flavobacterium genus 0 1 9 9211 237 46 898 1 96345 species Flavobacterium psychrophilum 0 0 Flavobacterium branchiophilum species 55197 699 1 0 species Flavobacterium gilvum 1492737 1022 1 species Flavobacterium crassostreae 0 402 1 1763534 species Flavobacterium columnare 0 996 1 1571 879 1 312277 0 Flavobacterium indicum species 0 Flavobacterium johnsoniae species 986 2718 1 species Flavobacterium commune 0 1306519 976 1 112040 1013 1 0 genus 0 Zobellia galactanivorans species 1013 1 63186 389486 1 399 0 genus 1 399 2648869 0 no rank 1453352 399 1 0 species Sediminicola sp. YIK13 3080 5 252356 1 Maribacter genus 0 1 0 no rank 2457 3 2615042 0 species Maribacter sp. HTCC2170 1 571 313603 1836467 682 1 Maribacter sp. T28 species 0 1644130 1 1204 species Maribacter sp. 1_2014MBL_MicDiv 0 0 species Maribacter cobaltidurans 1178778 622 1 788 1 336276 genus 0 788 1 2615019 0 no rank 2058135 1 788 species Olleya sp. Bg11-27 0 337 1 1176327 genus 0 0 no rank 1 337 2636237 337 1 2094025 Aureitalea sp. RR4-38 species 0 0 1 Formosa genus 3 803 13 225842 no rank 0 790 2 2644710 Formosa sp. Hel3_A1_48 species 0 352 1 1336795 1336794 438 1 Formosa sp. Hel1_33_131 species 0 2 1680 61432 no rank 0 531844 1 789 0 species Flavobacteriaceae bacterium 3519-10 891 1 1150389 Flavobacteriaceae bacterium UJ101 species 0 genus 0 959 1 2700084 species Lutibacter sp. LPB0138 0 959 1 1850246 2 707 1 358023 0 1 Lutibacter genus 0 species Lutibacter profundi 1 706 1622118 genus Polaribacter 1 0 6 4812 52959 7 no rank 0 196858 2404 3 0 Polaribacter sp. MED152 species 313598 1 712 Polaribacter sp. BM10 species 0 803 1 1529069 Polaribacter sp. ALD11 species 0 889 1 2058137 1256 1 1774273 0 species Polaribacter vadi 0 species Polaribacter reichenbachii 996801 1145 1 genus 0 1 1179 1649495 0 no rank 2622645 1 1179 1936081 1 1179 0 species Seonamhaeicola sp. S2-3 Salegentibacter genus 1 0 744 2 143222 2 1 742 2633436 0 no rank Salegentibacter sp. T436 species 0 1729720 742 1 genus 0 788 1 1204360 0 species Siansivirga zeaxanthinifaciens 1 788 762954 39782 2 2500 10 Blattabacteriaceae family 1 0 34098 8 9 2498 Blattabacterium genus 0 1 1 302 164514 Blattabacterium punctulatus species 0 no rank 0 2647581 1931 6 1 191 39768 Blattabacterium sp. (Mastotermes darwiniensis) species 0 0 Blattabacterium sp. (Blatta orientalis) species 205 1 367806 0 Blattabacterium sp. (Blaberus giganteus) species 1 303 1186051 species Blattabacterium sp. (Nauphoeta cinerea) 0 1 292 1316444 0 Blattabacterium sp. (Blattella germanica) species 624186 652 1 367488 288 1 Blattabacterium sp. (Periplaneta americana) species 0 0 species Blattabacterium cuenoti 1 257 1653831 7 3821 45 1100069 0 1 Bacteroidetes Order II. Incertae sedis order Rhodothermaceae family 0 1 6 3776 563843 19 1 0 genus Salinibacter 1 146918 2 666 species Salinibacter ruber 0 665 1 146919 no rank 0 1409 1 1196022 Rhodothermaceae bacterium RA species 0 1409 1 1779382 42 29548 1682 2 1 0 genus Rhodothermus 29549 1640 1 Rhodothermus marinus species 0 0 1 Chitinophagia class 15 10017 20 1853228 14 9997 1853229 14 order Chitinophagales 0 1 141 563835 13 9983 1 0 family Chitinophagaceae 0 1 Chitinophaga genus 3147 3 1 79328 species Chitinophaga pinensis 0 79329 1 1809 0 Chitinophagaceae bacterium 13 species 1337 1 2029983 genus 0 1 1100 1769012 2636138 1 1100 no rank 0 Arachidicoccus sp. BS20 species 0 1850526 1 1100 0 1 Niabella genus 1 379899 3 1927 1 923 446683 0 Niabella soli species Niabella ginsenosidivorans species 0 1176587 1003 1 354354 1 1740 2 genus Niastella 1 0 Niastella koreensis species 0 1 1739 354356 0 1 Flavisolibacter genus 2 833 8 398041 825 1 1492898 0 Flavisolibacter tropicus species genus 0 649460 1095 1 species Filimonas lacunae 0 477680 1095 1 5 1937959 7 1859 0 1 class Saprospiria 6 1854 3 1936988 0 1 Saprospirales order 0 family 2 1293 1937961 1 2349 2 1293 0 1 Haliscomenobacter genus Haliscomenobacter hydrossis species 0 1 1292 2350 1 0 Saprospiraceae family 1 89374 3 558 Saprospira genus 0 1 1007 11 557 2 1008 546 1 0 Saprospira grandis species phylum 0 1134404 6 1307 1307 6 795747 1 class Ignavibacteria 0 1 0 1 Ignavibacteriales order 5 1306 11 795748 2 738 795749 1 family Ignavibacteriaceae 1 0 0 genus 737 1 795750 0 species Ignavibacterium album 591197 1 737 family 0 1334117 2 557 genus Melioribacter 0 1 1134403 4 557 2 553 1 1134405 Melioribacter roseus species 0 phylum 0 2433 8 142182 8 2433 219685 11 Gemmatimonadetes class 1 0 7 2422 219686 53 order Gemmatimonadales 1 0 2369 6 219687 26 Gemmatimonadaceae family 0 1 Gemmatimonas genus 0 1 3 1186 173479 35 618 1 173480 0 Gemmatimonas aurantiaca species Gemmatimonas phototrophica species 0 1379270 533 1 Gemmatirosa genus 0 1 1706036 4 1157 2 1 1153 861299 species Gemmatirosa kalamazoonesis 0 65842 4 1382 phylum 0 2 204430 1382 4 0 1 Fibrobacteria class Fibrobacterales order 1 0 3 1380 218872 1 2 204431 1379 2 1 0 Fibrobacteraceae family 1 1377 832 genus 0 1377 1 833 0 Fibrobacter succinogenes species phylum 0 456828 2 303 1 0 genus Candidatus Cloacimonas 7 456826 2 303 Candidatus Cloacimonas acidaminovorans species 0 456827 1 296 1930617 1 878 0 phylum 1 878 1962850 0 class 1962852 878 1 order 0 family 0 878 1 1962854 187144 1 878 0 genus 0 species Caldithrix abyssi 1 878 187145 phylum 0 25 36131 32066 16 203490 36131 25 1 0 Fusobacteriia class 0 1 order Fusobacteriales 50 203491 24 36115 1129771 2 11 8527 Leptotrichiaceae family 1 0 4447 5 32067 20 genus Leptotrichia 1 0 2633022 3417 3 no rank 0 Leptotrichia sp. oral taxon 847 species 0 1785996 1 959 0 species Leptotrichia sp. oral taxon 212 1097 1 712357 0 species Leptotrichia sp. oral taxon 498 712368 1361 1 40542 1 1010 species Leptotrichia buccalis 0 1 0 genus Sneathia 2 1253 9 168808 1244 1 187101 species Sneathia amnii 0 0 genus 32068 1373 1 1373 1 826 0 Sebaldella termitidis species 1 0 genus Streptobacillus 1 34104 2 1452 0 Streptobacillus moniliformis species 34105 1451 1 76 203492 27538 12 1 0 family Fusobacteriaceae 2 972 2 167639 1 0 genus Ilyobacter 167642 1 970 Ilyobacter polytropus species 0 9 26490 848 48 genus Fusobacterium 0 1 0 Fusobacterium nucleatum species 851 8565 1 species Fusobacterium necrophorum 0 1 953 859 849 1123 1 species Fusobacterium gonidiaformans 0 1583098 2671 1 species Fusobacterium hwasookii 0 2176 1 861 species Fusobacterium ulcerans 0 0 species Fusobacterium varium 3717 1 856 0 species Fusobacterium periodonticum 860 5100 1 Fusobacterium mortiferum species 0 2137 1 850 884 5 200938 0 phylum class Chrysiogenetes 0 1 884 5 118001 22 order Chrysiogenales 1 0 862 4 189769 8 189770 3 854 3 family Chrysiogenaceae 1 0 393029 11 2 851 Desulfurispirillum genus 1 0 936456 840 1 Desulfurispirillum indicum species 0 0 clade 1783272 4962751 1690 phylum Tenericutes 1 0 45126 102 544448 5 2 1255 2799557 no rank 0 1 1912503 2 1255 0 1 Candidatus Izimaplasma genus no rank 0 2624196 1254 1 1541959 1 1254 0 Candidatus Izimaplasma sp. HR1 species no rank 0 2 2554 713063 1911684 1304 1 0 Tenericutes bacterium MO-XQ species 0 species Tenericutes bacterium MZ-XQ 1911683 1250 1 class Mollicutes 1 0 31969 23 97 41312 13 5380 186329 20 Acholeplasmatales order 0 1 29 2146 12 5360 1 0 family Acholeplasmataceae 0 1 genus Candidatus Phytoplasma 1513 6 8 33926 329 1 85630 0 species group 37692 329 1 0 species Candidatus Phytoplasma mali 3 790 85620 0 species group species Onion yellows phytoplasma 0 100379 329 1 species Aster yellows witches'-broom phytoplasma 0 229545 234 1 0 Maize bushy stunt phytoplasma species 227 1 202462 0 species group 85632 1 386 0 species Candidatus Phytoplasma australiense 59748 1 386 1 0 Acholeplasma genus 46 2147 3818 5 0 Acholeplasma brassicae species 630 1 61635 1 825 35623 Acholeplasma oculi species 0 1 1081 2148 0 Acholeplasma laidlawii species 38986 1236 1 0 Acholeplasma palmae species 186328 20 19006 39 order Entomoplasmatales 1 0 33925 9 5911 14 Entomoplasmataceae family 1 0 1 0 genus Mesoplasma 4145 8 155 46239 0 species Mesoplasma coleopterae 324078 1 523 0 species Mesoplasma chauliocola 216427 457 1 species Mesoplasma tabanidae 0 1 387 219745 0 Mesoplasma syrphidae species 1 398 225999 species Mesoplasma florum 0 2151 1054 1 2149 1 445 0 species Mesoplasma entomophilum Mesoplasma lactucae species 0 138853 1 726 46238 13 5 1757 genus Entomoplasma 1 0 Entomoplasma somnilux species 0 1 455 215578 species Entomoplasma melaleucae 0 81459 888 1 153 1 74700 species Entomoplasma freundtii 0 214888 1 248 0 species Entomoplasma luminosum 2131 23 13075 24 family Spiroplasmataceae 1 0 23 13052 297 2132 0 1 Spiroplasma genus 0 Spiroplasma corruscae species 1 581 216934 0 species Spiroplasma kunkelii 47834 773 1 species Spiroplasma apis 0 508 1 2137 species Spiroplasma cantharicola 0 362837 405 1 2637901 2 1008 no rank 0 1898044 504 1 0 Spiroplasma sp. TU-14 species 1914410 504 1 0 species Spiroplasma sp. NBRC 100390 Spiroplasma clarkii species 0 1 501 2139 0 species Spiroplasma sabaudiense 325 1 216944 216937 1007 1 0 species Spiroplasma floricola Spiroplasma turonicum species 0 1 681 216946 2133 1 598 species Spiroplasma citri 0 species Spiroplasma atrichopogonis 0 1114980 510 1 1 675 2145 0 Spiroplasma taiwanense species species Spiroplasma helicoides 0 1 636 216938 0 Spiroplasma syrphidicola species 216945 1 346 0 species Spiroplasma chrysopicola 216933 474 1 1 496 2144 species Spiroplasma mirum 0 771 1 216936 species Spiroplasma diminutum 0 Spiroplasma culicicola species 0 775 1 216935 Spiroplasma eriocheiris species 0 315358 1 547 0 Spiroplasma litorale species 216942 1 531 0 Spiroplasma monobiae species 1 607 2136 2085 11 44 16903 order Mycoplasmatales 0 1 family Mycoplasmataceae 0 1 16892 43 2092 54 genus 0 12 5631 2767358 Mycoplasma bovis species 0 781 1 28903 0 species Mycoplasma arginini 2094 664 1 2112 440 1 Mycoplasma bovigenitalium species 0 0 Mycoplasma cynos species 1 463 171284 0 species Mycoplasma pullorum 48003 1 348 0 species Mycoplasma fermentans 2115 488 1 568 1 2110 0 species Mycoplasma agalactiae 0 species Mycoplasma canis 1 641 29555 0 Mycoplasma pulmonis species 386 1 2107 0 species Mycoplasma synoviae 2109 289 1 233 1 2113 0 species Mycoplasma californicum 29553 330 1 species Mycoplasma bovirhinis 0 Ureaplasma genus 0 1 1067 3 2129 11 134821 1 509 0 species Ureaplasma parvum 0 Ureaplasma urealyticum species 1 547 2130 Mycoplasma genus 1 0 2093 176 10140 27 264 1 2099 0 Mycoplasma hyopneumoniae species 1 390 2111 0 Mycoplasma arthritidis species 0 Mycoplasma haemocanis species 136241 79 1 2096 1 290 0 Mycoplasma gallisepticum species 1 182 45362 0 Mycoplasma bovoculi species 29501 45 1 species Mycoplasma haemofelis 0 Mycoplasma yeatsii species 0 1 591 51365 595 1 2118 0 Mycoplasma mobile species 654 1 28227 0 Mycoplasma penetrans species 1 139 171632 0 Mycoplasma ovis species 0 species Mycoplasma parvum 984991 1 121 2683645 207 1 no rank 0 207 1 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) species 0 0 Mycoplasma hyorhinis species 2100 1 406 0 Mycoplasma suis species 57372 107 1 0 species Mycoplasma canadense 29554 1 485 0 species Mycoplasma flocculare 108 1 2128 species Mycoplasma putrefaciens 0 1 485 2123 1 521 50052 0 species Mycoplasma crocodyli 164 1 86660 Mycoplasma dispar species 0 2097 1 110 0 species Mycoplasma genitalium 0 species Mycoplasma pneumoniae 1 143 2104 species Mycoplasma wenyonii 0 92 1 65123 3 2889 656088 0 species group Mycoplasma capricolum species 0 648 1 2095 0 species Mycoplasma leachii 1 817 2105 0 Mycoplasma mycoides species 1424 1 2102 0 Mycoplasma hominis species 2098 1 897 phylum 0 1297 15340 36 15340 36 90 188787 0 1 class Deinococci Thermales order 0 1 68933 66 17 4527 0 1 Thermaceae family 26 188786 4461 16 10 65551 3 892 1 0 Meiothermus genus 277 1 546 species Meiothermus ruber 0 52022 1 336 0 Meiothermus silvanus species 0 1 Thermus genus 8 2447 44 270 Thermus thermophilus species 0 274 1 598 0 Thermus brockianus species 188 1 56956 Thermus oshimai species 0 306 1 56957 271 1 348 0 species Thermus aquaticus 37636 299 1 species Thermus scotoductus 0 311 1 456163 0 species Thermus parvatiensis no rank 0 353 1 2619321 species Thermus sp. CCB_US3_UF1 0 1111069 1 353 1 0 Oceanithermus genus 5 208447 754 2 0 Oceanithermus profundus species 187137 1 749 genus Marinithermus 0 1 186191 1 342 2 341 1 186192 Marinithermus hydrothermalis species 0 118964 84 9971 15 Deinococcales order 0 1 family Deinococcaceae 0 1 183710 37 9887 14 9850 13 1298 103 genus Deinococcus 1 0 0 Deinococcus proteolyticus species 1 942 55148 310783 1 623 Deinococcus deserti species 0 species Deinococcus swuensis 0 1215 1 1182571 no rank 0 2623546 755 1 2080419 755 1 0 species Deinococcus sp. NW-56 species Deinococcus gobiensis 0 502394 1019 1 0 species Deinococcus actinosclerus 766 1 1768108 1 788 1299 Deinococcus radiodurans species 0 68909 565 1 0 Deinococcus geothermalis species 1 631 432329 Deinococcus peraridilitoris species 0 898 1 1309411 species Deinococcus soli Cha et al. 2016 0 0 species Deinococcus puniceus 1182568 1 741 309887 804 1 species Deinococcus maricopensis 0 0 order 2762275 3 752 2 332247 3 752 0 1 Trueperaceae family 0 1 genus Truepera 2 750 5 332248 0 Truepera radiovictrix species 1 745 332249 717 4433555 1239 165 Firmicutes phylum 0 1 no rank 0 33974 2 1116 genus Ndongobacter 1 0 1930845 8 1116 2 0 species Ndongobacter massiliensis 1 1108 1871025 4 1676648 914 5 0 1 Limnochordia class 1676649 6 4 910 Limnochordales order 0 1 4 1676650 904 3 1 0 family Limnochordaceae genus Limnochorda 1 0 1676651 4 900 2 0 Limnochorda pilosa species 1555112 896 1 Tissierellia class 1 0 19 15368 1737404 1 16 14504 1737405 176 order Tissierellales 1 0 3 2625 2042895 3 Gottschalkiaceae family 0 1 genus Gottschalkia 0 1 2 2622 1505664 1 1556 1 2621 0 Gottschalkia acidurici species Peptoniphilaceae family 1 0 1570339 1191 11703 12 1 0 Parvimonas genus 16 543311 2 1865 33033 1 1849 species Parvimonas micra 0 1 0 Peptoniphilus genus 6 162289 1153 2 no rank 0 2637196 1147 1 1147 1 1912856 0 Peptoniphilus sp. ING2-D1G species 2 1766 150022 9 genus Finegoldia 0 1 1 1757 1260 0 Finegoldia magna species 1161127 3 3605 2 genus Murdochiella 0 1 1852373 1 3602 species Murdochiella vaginalis 0 3 2123 3 165779 0 1 Anaerococcus genus Anaerococcus prevotii species 0 33034 1132 1 Anaerococcus mediterraneensis species 0 988 1 1870984 1737407 2 863 no rank 0 2 863 1582879 10 Ezakiella genus 1 0 0 Ezakiella massiliensis species 853 1 1852374 class Clostridia 1 0 3877731 215 186801 170 0 1 Clostridiales order 3842955 163 5719 186802 Lachnospiraceae family 0 1 186803 736 27 2160152 1 22074 2719231 genus 0 [Clostridium] saccharolyticum species 0 84030 1 22074 132511 1 28050 0 genus 0 species [Eubacterium] eligens 39485 132511 1 2 1254107 186928 0 no rank 712991 9527 1 0 Lachnospiraceae bacterium oral taxon 500 species 39491 1 1244580 0 species [Eubacterium] rectale Cellulosilyticum genus 0 1 698776 38 4539 2 29360 1 4501 species Cellulosilyticum lentocellum 0 0 1 Anaerostipes genus 125714 2 157 207244 125557 1 649756 0 species Anaerostipes hadrus 208 1506553 4 62417 1 0 Lachnoclostridium genus 1 24001 2608895 0 no rank 24001 1 1834196 Lachnoclostridium sp. YL32 species 0 28135 1 1871021 0 species Lachnoclostridium phocaeense species Lachnoclostridium phytofermentans 0 66219 1 10073 genus 0 1 72194 2569097 0 [Eubacterium] hallii species 1 72194 39488 1 0 genus Roseburia 339511 2 35 841 0 Roseburia hominis species 1 339476 301301 2 6116 5 1663717 0 1 genus Herbinix 0 species Herbinix luporum 1679721 6111 1 0 1 Anaerotignum genus 8 2039240 2 3792 species Anaerotignum propionicum 0 3784 1 28446 Butyrivibrio genus 1 0 28182 3 830 15 Butyrivibrio hungatei species 0 185008 1 14612 43305 1 13555 species Butyrivibrio proteoclasticus 0 genus Blautia 0 1 572511 35 3 63408 species Blautia hansenii 0 40716 1 1322 1 22657 2648079 0 no rank 1 22657 1796616 species Blautia sp. YL58 0 genus 0 1 44851 2719313 1 44851 208479 [Clostridium] bolteae species 0 family Syntrophomonadaceae 0 1 68298 2 4 830 129001 1 2 305 genus Syntrophothermus 0 1 Syntrophothermus lipocalidus species 0 304 1 86170 862 1 523 genus 0 0 species Syntrophomonas wolfei 1 523 863 4 11283 186806 15 family Eubacteriaceae 1 0 0 1 Eubacterium genus 225 1730 2 9766 9541 1 1736 0 Eubacterium limosum species 1 1502 33951 genus 0 1 1502 33952 0 species Acetobacterium woodii family Ruminococcaceae 0 1 1325265 12 541000 346 1 2223 552397 0 no rank 0 [Clostridium] cellulosi species 29343 1 2223 Flavonifractor genus 0 1 946234 35 2 35317 0 species Flavonifractor plautii 292800 1 35282 0 no rank 2305133 1 4834 0 species Ruminococcaceae bacterium CPB6 1572656 1 4834 235 216851 2 1241754 0 1 Faecalibacterium genus 1 1241519 853 Faecalibacterium prausnitzii species 0 5742 2 253238 10 genus Ethanoligenens 1 0 253239 1 5732 0 species Ethanoligenens harbinense 1263 89 35049 3 Ruminococcus genus 1 0 Ruminococcus albus species 0 7605 1 1264 Ruminococcus bicirculans species 0 1160721 1 27355 1764 3 10 31984 0 1 Heliobacteriaceae family 6 2697 1754 2 0 1 genus Heliobacterium 0 species Heliobacterium modesticaldum 35701 1748 1 family Peptococcaceae 1 0 29 22835 186807 74 2 732 2 471826 0 1 genus Candidatus Desulforudis 471827 1 730 0 species Candidatus Desulforudis audaxviator genus 0 1254 1 2282740 Desulfotomaculum gibsoniae species 0 1 1254 102134 51196 2 1168 2 genus Syntrophobotulus 1 0 0 Syntrophobotulus glycolicus species 51197 1 1166 3555 5 1562 40 genus Desulfotomaculum 1 0 Desulfotomaculum reducens species 0 59610 1 711 Desulfotomaculum ruminis species 0 1122 1 1564 Desulfotomaculum ferrireducens species 0 1833852 1 926 Desulfotomaculum nigrificans species 0 1 756 1565 genus 0 2282742 950 1 species Desulfotomaculum acetoxidans 0 950 1 58138 121 36853 5308 5 0 1 Desulfitobacterium genus 142877 934 1 0 Desulfitobacterium metallireducens species 233055 1 978 0 Desulfitobacterium dichloroeliminans species Desulfitobacterium dehalogenans species 0 1 1261 36854 49338 2014 1 0 Desulfitobacterium hafniense species 820 2 278993 5 Thermincola genus 0 1 species Thermincola potens 0 815 1 863643 0 1 Desulfosporosinus genus 3025 4 46 79206 885581 1 867 species Desulfosporosinus acidiphilus 0 Desulfosporosinus meridiei species 0 1 1110 79209 0 Desulfosporosinus orientis species 1002 1 1563 Dehalobacter genus 1 0 56112 26 4052 4 2635733 2652 2 no rank 0 1353 1 1131462 species Dehalobacter sp. CF 0 1299 1 1147129 species Dehalobacter sp. DCA 0 1374 1 55583 0 species Dehalobacter restrictus 0 1 Dehalobacterium genus 2 1897 2 51514 1 1895 51515 0 Dehalobacterium formicoaceticum species Clostridiaceae family 0 1 147149 41 31979 190 Mordavella genus 0 162 1 1981033 Alkaliphilus genus 0 1 3 3166 114627 5 208226 1567 1 species Alkaliphilus metalliredigens 0 1594 1 461876 0 species Alkaliphilus oremlandii 30 137833 613 1485 0 1 Clostridium genus 84023 2409 1 0 species Clostridium autoethanogenum 0 Clostridium argentinense species 29341 1 3341 Clostridium pasteurianum species 0 1501 5750 1 46867 1 3356 0 species Clostridium chauvoei 0 species Clostridium baratii 1561 5555 1 6327 1 1502 0 species Clostridium perfringens 1509 3275 1 Clostridium sporogenes species 0 0 Clostridium kluyveri species 1534 4199 1 1542 1 2522 0 species Clostridium novyi species Clostridium carboxidivorans 0 1 3983 217159 0 Clostridium beijerinckii species 6207 1 1520 1491 1 20577 0 species Clostridium botulinum 6050 1 1492 0 species Clostridium butyricum 0 no rank 2614128 2 17088 species Clostridium sp. BNL1100 0 2730 1 755731 0 species Clostridium sp. SY8519 1042156 14358 1 1548 1 3727 Clostridium scatologenes species 0 1 3935 1216932 0 species Clostridium bornimense Clostridium tyrobutyricum species 0 2548 1 1519 1 4168 1513 0 Clostridium tetani species 0 Clostridium estertheticum species 2603 1 238834 0 species Clostridium taeniosporum 3773 1 394958 species Clostridium cochlearium 0 1494 1 3576 2408 1 1538 Clostridium ljungdahlii species 0 84022 1598 1 0 Clostridium aceticum species 0 species Clostridium cellulovorans 1 3861 1493 1497 1 1831 Clostridium formicaceticum species 0 36745 1 6012 0 species Clostridium saccharoperbutylacetonicum 0 Clostridium acetobutylicum species 1488 1 2427 0 species Clostridium saccharobutylicum 1 4114 169679 1 0 genus Geosporobacter 2 2621 11 390805 0 Geosporobacter ferrireducens species 1424294 2610 1 3177 4 49082 20 Candidatus Arthromitus genus 1 0 2638829 3 3157 0 no rank species Candidatus Arthromitus sp. SFB-mouse 0 49118 1 849 0 species Candidatus Arthromitus sp. SFB-mouse-NL 1508644 1 1122 1041504 1186 1 0 species Candidatus Arthromitus sp. SFB-rat-Yit 0 1 Peptostreptococcaceae family 40019 12 383 186804 2 1967 44259 5 genus Filifactor 0 1 143361 1962 1 Filifactor alocis species 0 2 1758 1 1481960 0 1 genus Peptoclostridium species Peptoclostridium acidaminophilum 0 1731 1757 1 1849828 2 3813 2 genus Paeniclostridium 0 1 1505 1 3811 0 Paeniclostridium sordellii species genus Acetoanaerobium 0 1 1684 2 186831 2 0 Acetoanaerobium sticklandii species 1682 1 1511 1 1210 1411023 no rank 0 species Peptostreptococcaceae bacterium oral taxon 929 0 2081703 1210 1 2 29204 173 1870884 1 0 genus Clostridioides 0 Clostridioides difficile species 1 29031 1496 0 1 family Oscillospiraceae 4 216572 3 16203 0 1 genus Oscillibacter 16199 2 24 459786 351091 1 16175 Oscillibacter valericigenes species 0 3 7589 84 990719 1 0 Christensenellaceae family 0 1 genus Christensenella 2 7505 125 990721 0 Christensenella massiliensis species 1805714 7380 1 538999 9 73499 no rank 0 2717089 31935 1 genus 0 31935 1 2086584 0 Mordavella sp. Marseille-P3756 species 3725 4 11 543314 1 0 family Clostridiales Family XIII. Incertae Sedis 0 1 genus Mogibacterium 2 1602 5 86331 1597 1 114527 0 species Mogibacterium diversum 1 2112 143393 0 [Eubacterium] sulci species Intestinimonas genus 1 0 1392389 157 36872 2 species Intestinimonas butyriciproducens 0 1 36715 1297617 family 0 967 2 539000 8 73918 967 2 0 1 Thermaerobacter genus 73919 959 1 Thermaerobacter marianensis species 0 5 543349 3 1637 0 1 family Symbiobacteriaceae genus Symbiobacterium 1 0 1632 2 2733 14 1618 1 2734 0 Symbiobacterium thermophilum species 2304686 12 29011 family 0 genus 0 1 1710 2304691 0 species [Clostridium] stercorarium 1510 1 1710 0 1 Mageeibacillus genus 1 1637257 2072 2 species Mageeibacillus indolicus 0 1 2071 884684 genus 0 2304693 1 2066 species [Clostridium] thermosuccinogenes 0 84032 2066 1 0 genus 3 6542 2304692 288965 1 2519 [Clostridium] clariflavum species 0 1515 1 2339 0 species Ruminiclostridium thermocellum Herbivorax saccincola species 0 1684 1 1677857 Ruminiclostridium genus 0 1 2 3136 1508657 252 1 2884 1521 [Clostridium] cellulolyticum species 0 2305130 11901 1 no rank 0 Ruminiclostridium sp. KB18 species 0 1834198 11901 1 0 1 Fastidiosipila genus 6 236752 2 1584 1 1578 236753 Fastidiosipila sanguinis species 0 2770089 3 1712 order 0 2770092 1 1025 family 0 genus 0 499228 1025 1 499229 1 1025 0 Tepidanaerobacter acetatoxydans species family 0 2 687 2770093 2 687 2 291988 1 0 Thermosediminibacter genus species Thermosediminibacter oceani 0 1 685 291990 order Thermoanaerobacterales 1 0 68295 50 27523 35 1 0 Thermoanaerobacterales Family III. Incertae Sedis family 13750 13 26 543371 3 4062 4 28895 0 1 Thermoanaerobacterium genus 0 Thermoanaerobacterium thermosaccharolyticum species 1 2260 1517 0 Thermoanaerobacterium xylanolyticum species 1 1798 29329 9 9662 44000 139 genus Caldicellulosiruptor 0 1 1020 1 55205 species Caldicellulosiruptor owensensis 0 0 species Caldicellulosiruptor kristjanssonii 1 1454 52765 1182 1 413888 species Caldicellulosiruptor hydrothermalis 0 0 Caldicellulosiruptor saccharolyticus species 1039 1 44001 species Caldicellulosiruptor obsidiansis 0 1237 1 717609 species Caldicellulosiruptor bescii 0 1 1105 31899 1365 1 52766 species Caldicellulosiruptor lactoaceticus 0 species Caldicellulosiruptor kronotskyensis 0 1121 1 413889 17 186814 17 12735 0 1 family Thermoanaerobacteraceae genus Thermacetogenium 1 0 140458 3 450 2 Thermacetogenium phaeum species 0 85874 1 447 42857 3 1264 no rank 0 2 469 23 42837 1 0 genus Ammonifex 0 species Ammonifex degensii 1 446 42838 44260 795 1 0 genus 1525 1 795 0 species Moorella thermoacetica 1 0 Thermoanaerobacter genus 198 1754 9 9443 species Thermoanaerobacter mathranii 0 1120 1 583357 496866 965 1 Thermoanaerobacter pseudethanolicus species 0 Thermoanaerobacter italicus species 0 108150 1295 1 1 965 29323 species Thermoanaerobacter brockii 0 46354 1462 1 species Thermoanaerobacter wiegelii 0 0 no rank 2224 2 2636821 399726 1 1126 0 species Thermoanaerobacter sp. X514 1098 1 573062 Thermoanaerobacter sp. X513 species 0 2325 1214 1 0 Thermoanaerobacter kivui species genus 0 1 883 249529 1 883 911092 Caldanaerobacter subterraneus species 0 129957 1 678 genus 0 129958 678 1 species Carboxydothermus hydrogenoformans 0 1 0 family Thermodesulfobiaceae 1 227387 324 2 genus 0 323 1 227388 species Thermodesulfobium narugense 0 184064 1 323 664 2 2 543372 1 0 Thermoanaerobacterales Family IV. Incertae Sedis family 662 1 252965 genus 0 species Mahella australiensis 0 252966 662 1 1 0 order Halanaerobiales 3 53433 4619 9 53434 4 2126 3 Halobacteroidaceae family 1 0 28186 885 1 0 genus Acetohalobium arabaticum species 0 28187 1 885 0 genus 42417 1237 1 42422 1 1237 species Halobacteroides halobius 0 Halanaerobiaceae family 0 1 5 2490 972 4 0 1 genus Halanaerobium 3 1892 2 2330 917 1 656519 0 species Halanaerobium hydrogeniformans Halanaerobium praevalens species 0 2331 1 973 32636 1 594 0 genus 31909 1 594 Halothermothrix orenii species 0 752 4 2 485256 1 0 order Natranaerobiales 3 750 2 485255 1 0 family Natranaerobiaceae Natranaerobius genus 0 1 2 748 375928 10 738 1 375929 Natranaerobius thermophilus species 0 1 1085 84086 no rank 0 species endosymbiont 'TC1' of Trimyema compressum 0 1 1085 243899 0 1 class Erysipelotrichia 11 14405 6 526524 14399 10 26 526525 0 1 order Erysipelotrichales Erysipelotrichaceae family 1 0 9 14373 128827 85 2124 3 37 1647 1 0 Erysipelothrix genus species Erysipelothrix rhusiopathiae 0 1648 1109 1 1 978 1514105 0 species Erysipelothrix larvae 0 no rank 544447 1 6753 1834207 1 6753 Erysipelotrichaceae bacterium I46 species 0 genus Turicibacter 0 1 2143 2 191303 7 2136 1 2638206 no rank 0 0 species Turicibacter sp. H121 1 2136 1712675 1729679 1 3268 2 genus Faecalibaculum 0 1 0 Faecalibaculum rodentium species 1702221 3267 1 44 909932 82619 31 1 0 class Negativicutes 1 0 order Acidaminococcales 5 12844 15 1843488 0 1 family Acidaminococcaceae 12829 4 20 909930 45 904 12809 3 0 1 genus Acidaminococcus species Acidaminococcus intestini 0 187327 1 7264 5500 1 905 species Acidaminococcus fermentans 0 0 1 Veillonellales order 304 1843489 12397 11 736 31977 12093 10 1 0 family Veillonellaceae genus Dialister 1 0 2 1194 39948 8 Dialister pneumosintes species 0 1 1186 39950 29465 18 3 3530 genus Veillonella 1 0 248315 1576 1 0 species Veillonella rodentium 0 species Veillonella parvula 29466 1936 1 5653 2 906 105 Megasphaera genus 1 0 0 Megasphaera elsdenii species 1 5548 907 genus Negativicoccus 0 1 909928 3 2 980 977 1 1702287 species Negativicoccus massiliensis 0 Selenomonadales order 1 0 909929 73 14 57334 53556 9 1843491 44 family Selenomonadaceae 1 0 Megamonas genus 1 0 158846 3 39823 2 0 species Megamonas hypermegale 39820 1 158847 0 1 genus Selenomonas 99 970 13689 6 1 2586 69823 0 Selenomonas sputigena species 0 no rank 2637378 3 6275 0 species Selenomonas sp. oral taxon 920 1994 1 1884263 0 species Selenomonas sp. oral taxon 478 712538 2172 1 2109 1 713030 species Selenomonas sp. oral taxon 136 0 species Selenomonas ruminantium 0 4729 1 971 1 0 family Sporomusaceae 2 1843490 3705 4 365348 8 3703 3 Pelosinus genus 0 1 1970 1 365349 species Pelosinus fermentans 0 0 no rank 2629460 1725 1 species Pelosinus sp. UFO1 0 484770 1 1725 0 1 class Bacilli 244 91061 440152 432 Bacillales order 0 1 262963 265 1385 454 10 186821 868 2 0 1 Sporolactobacillaceae family 858 1 663587 no rank 0 species [Bacillus] selenitireducens 0 858 1 85683 1 0 Listeriaceae family 7938 8 17 186820 2755 789 1 0 genus 0 species Brochothrix thermosphacta 2756 789 1 6 7132 86 1637 1 0 genus Listeria 1 843 1640 0 Listeria seeligeri species Listeria monocytogenes species 0 1639 1 3025 1 966 1643 0 Listeria welshimeri species 1642 908 1 species Listeria innocua 0 1 1304 1638 Listeria ivanovii species 0 539002 4948 9 0 no rank 1197 2 539738 0 no rank Gemella genus 0 1 1378 2 1197 2 0 no rank 2624949 1195 1 species Gemella sp. oral taxon 928 0 1195 1 1785995 539742 3751 7 0 no rank 135 33986 7 3751 0 1 genus Exiguobacterium species Exiguobacterium antarcticum 0 1 694 132920 332410 1 607 0 Exiguobacterium sibiricum species no rank 0 4 2315 2644629 0 Exiguobacterium sp. U13-1 species 1 621 1849031 1399115 471 1 0 species Exiguobacterium sp. MH3 species Exiguobacterium sp. ZWU0009 0 1 692 1224749 Exiguobacterium sp. AT1b species 0 360911 531 1 46 64828 126 186822 0 1 Paenibacillaceae family 2 1631 76632 8 genus Thermobacillus 1 0 377615 1 1623 0 species Thermobacillus composti no rank 0 85151 3 2462 genus Aneurinibacillus 0 1 2462 3 55079 3 2642329 1353 1 no rank 0 Aneurinibacillus sp. XH2 species 0 1450761 1353 1 1106 1 1500254 species Aneurinibacillus soli 0 4 4132 55080 27 genus Brevibacillus 1 0 1465 1 1676 0 species Brevibacillus laterosporus 809 1 54913 0 Brevibacillus formosus species 1620 1 1393 0 species Brevibacillus brevis 1 0 genus Paenibacillus 36 56477 515 44249 Paenibacillus odorifer species 0 1 1197 189426 Paenibacillus bovis species 0 1719 1 1616788 0 Paenibacillus xylanexedens species 1366 1 528191 0 species Paenibacillus crassostreae 961 1 1763538 species Paenibacillus sabinae 0 1 1301 365617 1422 1 1126833 0 Paenibacillus beijingensis species 414771 2009 1 0 species Paenibacillus donghaensis 185978 19110 13 0 no rank 2190 1 1536773 0 species Paenibacillus sp. FSL R7-0331 0 Paenibacillus sp. IHBB 10380 species 1566358 804 1 1870819 1 991 0 species Paenibacillus sp. BIHB4019 0 Paenibacillus sp. lzh-N1 species 1044 1 2069255 1536775 1141 1 0 species Paenibacillus sp. FSL H7-0737 0 species Paenibacillus sp. 32O-W 1695218 973 1 species Paenibacillus sp. FSL R7-0273 0 1536772 1 2018 1187 1 481743 0 Paenibacillus sp. Y412MC10 species 1 1530 1536774 0 species Paenibacillus sp. FSL H7-0357 1536770 1114 1 Paenibacillus sp. FSL R5-0345 species 0 0 species Paenibacillus sp. FSL R5-0912 1 2649 1536771 324057 1357 1 0 Paenibacillus sp. JDR-2 species Paenibacillus sp. FSL P4-0081 species 0 1536769 2112 1 1178515 900 1 Paenibacillus swuensis species 0 2457 1 61624 0 species Paenibacillus mucilaginosus 1 2238 189425 species Paenibacillus graminis 0 172713 1073 1 0 Paenibacillus kribbensis species Paenibacillus polymyxa species 0 4188 1 1406 1 1077 59893 0 Paenibacillus peoriae species 159743 1 1096 0 Paenibacillus terrae species 1704 1 1462996 Paenibacillus yonginensis species 0 species Paenibacillus larvae 0 1464 1407 1 1 2320 160799 0 species Paenibacillus borealis 0 species Paenibacillus ihbetae 1870820 1334 1 species group 0 2044880 2094 1 0 Paenibacillus riograndensis species 483937 2094 1 0 species Paenibacillus stellifer 169760 1 1958 1014 1 162209 Paenibacillus naphthalenovorans species 0 1 2017 44251 Paenibacillus durus species 0 186818 37 27 17625 family Planococcaceae 0 1 0 1 genus Sporosarcina 5 4731 37 1569 0 no rank 2647733 1579 2 0 Sporosarcina sp. P37 species 726 1 1930546 Sporosarcina sp. P33 species 0 1930764 1 853 1476 689 1 0 Sporosarcina psychrophila species 2426 1 1571 0 species Sporosarcina ureae 3 2740 648800 5 genus Solibacillus 1 0 1 969 2637870 no rank 0 2048654 969 1 Solibacillus sp. R5-41 species 0 0 species Solibacillus silvestris 1766 1 76853 3 1649 2 970 1 0 Kurthia genus 967 1 2644826 0 no rank 0 species Kurthia sp. 11kri321 1750719 1 967 7343 12 1372 117 Planococcus genus 0 1 0 species Planococcus halocryophilus 1215089 551 1 1038856 537 1 Planococcus plakortidis species 0 species Planococcus sp. L10.15 0 1302659 372 1 1 1570 192421 Planococcus maritimus species 0 Planococcus kocurii species 0 629 1 1374 200991 1 514 0 Planococcus rifietoensis species 0 Planococcus antarcticus species 1 609 161360 577 1 414778 0 species Planococcus donghaensis 1598147 617 1 0 species Planococcus faecalis no rank 0 2 1250 2662419 Planococcus sp. PAMC 21323 species 0 1 556 1526927 0 Planococcus sp. MB-3u-03 species 1 694 2058136 0 1 genus Rummeliibacillus 2 764 1 648802 241244 763 1 0 species Rummeliibacillus stabekisii 157226 1 1040 2 Jeotgalibacillus genus 0 1 0 species Jeotgalibacillus malaysiensis 1508404 1039 1 Bacillaceae family 0 1 186817 334 117 121532 Lentibacillus genus 0 1 745 2 175304 2 1472767 1 743 Lentibacillus amyloliquefaciens species 0 Halobacillus genus 0 1 1483 3 45667 1 683 1 402384 species Halobacillus mangrovi 0 1570 1 799 species Halobacillus halophilus 0 1055323 1 932 genus 0 33936 932 1 0 species Aeribacillus pallidus genus Fictibacillus 0 1 2481 3 1329200 9 1221500 1 1280 Fictibacillus phosphorivorans species 0 1 1192 255247 0 Fictibacillus arsenicus species 150247 21 4120 6 Anoxybacillus genus 0 1 0 species Anoxybacillus flavithermus 1 794 33934 no rank 0 2639704 2 1756 1 862 1490057 species Anoxybacillus sp. B7M1 0 1 894 1490052 0 Anoxybacillus sp. B2M1 species 0 Anoxybacillus gonensis species 802 1 198467 294699 1 747 0 Anoxybacillus amylolyticus species 0 1 Salimicrobium genus 753 2 1 351195 1230341 1 752 species Salimicrobium jeotgali 0 genus 0 1906945 1 842 0 species Parageobacillus thermoglucosidasius 1426 842 1 5 4415 2675234 0 genus 0 Bacillus lehensis species 1 644 300825 199441 1210 1 0 Bacillus krulwichiae species 0 species Bacillus halodurans 86665 1 515 species Bacillus clausii 0 79880 1028 1 1018 1 79885 species Bacillus pseudofirmus 0 1107 1 29331 genus 0 Amphibacillus xylanus species 0 1107 1 1449 0 genus 2 2153 2675230 859143 1 981 Bacillus kochii species 0 665099 1172 1 Bacillus oceanisediminis species 0 1 0 genus Virgibacillus 5542 7 6 84406 1 865 1473 0 Virgibacillus pantothenticus species 0 Virgibacillus phasianinus species 827 1 2017483 0 no rank 2 1772 2620237 403957 1 712 species Virgibacillus sp. SK37 0 species Virgibacillus sp. 6R 0 1060 1 1911587 1 1132 163877 0 species Virgibacillus necropolis 1 940 1482 Virgibacillus halodenitrificans species 0 genus 0 2675229 2348 2 0 Bacillus muralis species 1 846 264697 1502 1 1478 0 Bacillus simplex species 129337 529 8464 15 Geobacillus genus 1 0 0 species Geobacillus stearothermophilus 1422 1 672 129338 1 495 0 Geobacillus subterraneus species 0 no rank 2642459 2783 6 581103 778 1 species Geobacillus sp. Y4.1MC1 0 0 Geobacillus sp. Y412MC52 species 1 306 550542 0 species Geobacillus sp. C56-T3 691437 349 1 Geobacillus sp. Y412MC61 species 0 267 1 544556 1233873 1 312 0 species Geobacillus sp. GHH01 species Geobacillus sp. WCH70 0 471223 1 771 33940 951 1 0 species Geobacillus thermodenitrificans 1505648 4 2351 0 species group Geobacillus lituanicus species 0 169283 521 1 species Geobacillus thermoleovorans 0 33941 1190 1 species Geobacillus thermocatenulatus 0 33938 1 378 0 species Geobacillus kaustophilus 1 262 1462 0 species Geobacillus genomosp. 3 1921421 683 1 Bacillus genus 0 1 76933 58 1386 2825 86661 26652 10 species group 0 3 2634 2750818 no rank 0 Bacillus sp. FDAARGOS_235 species 0 1 1106 1839798 Bacillus sp. ABP14 species 0 1892404 799 1 2053832 729 1 species Bacillus sp. HBCD-sjtu 0 658666 1 761 0 species Bacillus bombysepticus 0 species Bacillus thuringiensis 1428 8463 1 1 1225 580165 species Bacillus cytotoxicus 0 Bacillus cereus species 0 1 8720 1396 1 788 155322 Bacillus toyonensis species 0 Bacillus anthracis species 0 672 1 1392 1405 3389 1 0 species Bacillus mycoides 0 species Bacillus beveridgei 632773 1 962 1404 1 3128 0 Bacillus megaterium species 839 1 1792192 0 species group 0 species Bacillus altitudinis 1 839 293387 1014 1 79883 species Bacillus horikoshii 0 0 Bacillus methanolicus species 1471 847 1 0 species Bacillus aryabhattai 1 1342 412384 0 species Bacillus weihaiensis 1 974 1547283 1398 2416 1 0 species Bacillus coagulans species Bacillus endophyticus 0 135735 1622 1 0 species Bacillus smithii 670 1 1479 1413 1137 1 0 Bacillus cellulosilyticus species 0 species Bacillus xiamenensis 584 1 1178537 561879 1630 1 0 species Bacillus safensis 86664 1 953 0 Bacillus flexus species 185979 10097 19 no rank 0 species Bacillus sp. H15-1 0 1 543 1856406 666686 1 1539 Bacillus sp. 1NLA3E species 0 1570330 1 190 Bacillus sp. BH072 species 0 422 1 563169 0 species Bacillus sp. SJ-10 632 1 98228 0 Bacillus sp. OxB-1 species 1565991 1 1022 species Bacillus sp. X1(2014) 0 0 Bacillus sp. IHB B 7164 species 1827146 1086 1 0 species Bacillus sp. Lzh-5 94 1 2049935 Bacillus sp. Pc3 species 0 1446792 426 1 715 1 1837130 0 species Bacillus sp. FJAT-14266 1774743 1 466 0 Bacillus sp. SDLI1 species 0 Bacillus sp. 275 species 1 438 1941347 2009331 1 361 0 Bacillus sp. MD-5 species 0 species Bacillus sp. 1s-1 1 544 2026248 208 1 1628753 0 species Bacillus sp. LM 4-2 1574141 195 1 Bacillus sp. YP1 species 0 756828 1 777 Bacillus sp. WP8 species 0 species Bacillus sp. JS 0 1127744 1 298 0 Bacillus sp. (in: Bacteria) species 1 141 1409 Bacillus glycinifermentans species 0 1664069 1 1159 9 12482 653685 0 species group 0 species Bacillus sonorensis 1 882 119858 Bacillus paralicheniformis species 0 1 949 1648923 72361 185 1 0 species Bacillus vallismortis 1 799 1402 species Bacillus licheniformis 0 1938374 3 3878 species subgroup 0 1 1560 492670 Bacillus velezensis species 0 Bacillus amyloliquefaciens species 0 1390 1867 1 451 1 659243 0 Bacillus siamensis species 1163 1 1452 0 Bacillus atrophaeus species 1 4626 1423 species Bacillus subtilis 0 1156 1 33932 Bacillus cohnii species 0 1 828 324767 Bacillus infantis species 0 1408 1 3415 species Bacillus pumilus 0 0 species Bacillus gibsonii 79881 201 1 5 6215 77 400634 1 0 Lysinibacillus genus 1 888 28031 species Lysinibacillus fusiformis 0 0 no rank 1 990 2636778 990 1 2072025 species Lysinibacillus sp. YS11 0 species Lysinibacillus sphaericus 0 3186 1 1421 1 1074 1145276 0 species Lysinibacillus varians genus 0 947 1 459532 1 947 586416 Terribacillus aidingensis species 0 0 1 Oceanobacillus genus 2 1718 2 182709 182710 1716 1 0 Oceanobacillus iheyensis species 0 1 Staphylococcaceae family 912 90964 42 39483 genus Salinicoccus 0 1 903 2 45669 2 Salinicoccus halodurans species 0 1 901 407035 Macrococcus genus 1 0 69965 38 2810 4 species Macrococcus canis 0 1855823 1 723 1122 1 69966 Macrococcus caseolyticus species 0 927 1 2619255 0 no rank species Macrococcus sp. IME1552 0 1898474 927 1 Auricoccucs genus 1 0 2005363 3 2 749 1849491 1 746 0 species Auricoccus indicus genus Staphylococcus 0 1 33 34109 1279 598 Staphylococcus capitis species 0 845 1 29388 155085 1 307 0 Staphylococcus lutrae species Staphylococcus epidermidis species 0 1805 1 1282 70255 1 1225 0 Staphylococcus condimenti species Staphylococcus pettenkoferi species 0 170573 445 1 species Staphylococcus succinus 0 61015 1 638 994 1 214473 0 Staphylococcus nepalensis species 0 species Staphylococcus sciuri 1 1214 1296 45972 2106 1 0 Staphylococcus pasteuri species 29384 1 797 0 species Staphylococcus kloosii Staphylococcus lugdunensis species 0 1 1043 28035 0 Staphylococcus cohnii species 29382 1055 1 no rank 0 91994 813 1 1715860 1 813 0 species Staphylococcus sp. AntiMn-1 species Staphylococcus stepanovicii 0 960 1 643214 631 1 985762 0 species Staphylococcus agnetis 0 species Staphylococcus equorum 246432 1 1101 Staphylococcus piscifermentans species 0 852 1 70258 1 682 1295 Staphylococcus schleiferi species 0 Staphylococcus hominis species 0 1008 1 1290 species Staphylococcus simulans 0 897 1 1286 985002 892 1 0 species Staphylococcus argenteus 784 1 1281 0 species Staphylococcus carnosus 0 Staphylococcus aureus species 1 3577 1280 Staphylococcus saprophyticus species 0 1192 1 29385 46127 1 732 species Staphylococcus felis 0 0 species Staphylococcus haemolyticus 1283 1057 1 308354 1 1379 Staphylococcus simiae species 0 1284 1 415 0 Staphylococcus hyicus species 0 Staphylococcus muscae species 1 581 1294 1 956 283734 0 Staphylococcus pseudintermedius species 0 species Staphylococcus xylosus 1288 1 1567 961 1 1292 Staphylococcus warneri species 0 725 4 3 186824 1 0 family Thermoactinomycetaceae genus Novibacillus 0 1 682 2 1677050 29 Novibacillus thermophilus species 0 1471761 1 653 genus Laceyella 0 40 1 292635 0 1 family Alicyclobacillaceae 9 4562 17 186823 1129704 35 3 925 Kyrpidia genus 1 0 1 495 33943 0 Kyrpidia tusciae species Kyrpidia sp. EA-1 species 0 2055160 395 1 2 1334 29330 46 genus Alicyclobacillus 0 1 405212 1288 1 Alicyclobacillus acidocaldarius species 0 13 432330 3 2286 0 1 Tumebacillus genus 0 species Tumebacillus algifaecis 1214604 849 1 1 1424 1903704 species Tumebacillus avium 0 1571 186826 176945 166 1 0 order Lactobacillales 10 186828 6042 11 1 0 Carnobacteriaceae family 1 0 Marinilactibacillus genus 2 191769 2 1270 0 no rank 2632303 1268 1 1911586 1 1268 species Marinilactibacillus sp. 15R 0 50 2747 5 3325 1 0 Carnobacterium genus Carnobacterium inhibens species 0 147709 634 1 Carnobacterium maltaromaticum species 0 2751 1 1167 257487 2 1474 no rank 0 574 1 1564681 0 species Carnobacterium sp. CP1 0 Carnobacterium sp. 17-4 species 1 900 208596 0 1 Jeotgalibaca genus 5 1470540 1437 3 1 702 2621505 no rank 0 0 Jeotgalibaca sp. PTS2502 species 1 702 1903686 708126 730 1 species Jeotgalibaca dankookensis 0 1716 1300 49 91165 1 0 family Streptococcaceae genus Streptococcus 0 1 43 83116 1301 2549 0 species group 119603 1792 2 0 Streptococcus equi species 1160 1 1336 0 Streptococcus dysgalactiae species 1 632 1334 1 437 1811193 0 Streptococcus pantholopis species species Streptococcus gordonii 0 1302 1714 1 Streptococcus macedonicus species 0 59310 1 661 Streptococcus parasanguinis species 0 1318 1 1283 no rank 0 7 5724 2608887 1 718 712633 species Streptococcus sp. oral taxon 431 0 1150 1 1156433 species Streptococcus sp. I-P16 0 1 762 1759399 species Streptococcus sp. A12 0 1839799 915 1 species Streptococcus sp. FDAARGOS_192 0 species Streptococcus sp. 'group B' 0 1319 1 471 492 1 1902136 species Streptococcus sp. NPS 308 0 Streptococcus sp. I-G2 species 0 1216 1 1156431 0 Streptococcus cristatus species 815 1 45634 1 1644 28037 species Streptococcus mitis 0 1309 806 1 0 species Streptococcus mutans 1091 1 1348 species Streptococcus parauberis 0 15438 3 671232 species group 0 1338 1192 1 0 Streptococcus intermedius species 76860 1 4564 0 Streptococcus constellatus species species Streptococcus anginosus 0 9682 1 1328 species Streptococcus uberis 0 1 692 1349 1888195 390 1 0 Streptococcus himalayensis species 0 Streptococcus marmotae species 613 1 1825069 1311 11469 1 Streptococcus agalactiae species 0 Streptococcus pneumoniae species 0 1 1396 1313 Streptococcus acidominimus species 0 875 1 1326 593 1 1814128 Streptococcus halotolerans species 0 species Streptococcus pseudopneumoniae 0 649 1 257758 150055 2487 1 species Streptococcus lutetiensis 0 Streptococcus pluranimalium species 0 661 1 82348 1335 707 1 Streptococcus equinus species 0 400065 1 684 0 species Streptococcus merionis 0 species Streptococcus salivarius 1 3645 1304 Streptococcus iniae species 0 1 1000 1346 1 1615 1314 0 Streptococcus pyogenes species species Streptococcus infantarius 0 1 2750 102684 species Streptococcus sanguinis 0 1 1060 1305 species Streptococcus gallolyticus 0 315405 1 1736 1307 1 10269 0 species Streptococcus suis 1303 2311 1 0 Streptococcus oralis species species Streptococcus thermophilus 0 1308 1498 1 species Streptococcus pasteurianus 0 2062 1 197614 genus Lactococcus 0 1 6333 5 1357 9 0 Lactococcus raffinolactis species 1 836 1366 0 Lactococcus garvieae species 1269 1 1363 0 Lactococcus lactis species 1 3532 1358 1364 687 1 0 species Lactococcus piscium 0 1 Leuconostocaceae family 6 81850 18 6533 42 46255 1928 6 0 1 Weissella genus 165096 1 466 0 Weissella koreensis species 1 292 759620 species Weissella ceti 0 1631871 374 1 0 species Weissella jogaejeotgali 471 1 1249 species Weissella paramesenteroides 0 1 283 137591 0 Weissella cibaria species 1 0 Oenococcus genus 1 46254 2 557 1247 556 1 0 Oenococcus oeni species 51 1243 9 4042 0 1 Leuconostoc genus Leuconostoc garlicum species 0 255248 1 239 0 species Leuconostoc carnosum 1252 415 1 species Leuconostoc mesenteroides 0 1245 928 1 0 species Leuconostoc gelidum 1 784 1244 1246 314 1 species Leuconostoc lactis 0 species Leuconostoc citreum 0 33964 297 1 1 402 2685106 no rank 0 species Leuconostoc sp. C2 0 402 1 979982 136609 612 1 Leuconostoc kimchii species 0 109 81852 24186 20 0 1 Enterococcaceae family 0 1 Enterococcus genus 1098 1350 12 19805 Enterococcus wangshanyuanii species 0 1 917 2005703 species Enterococcus mundtii 0 1187 1 53346 no rank 0 1696 3 2608891 0 species Enterococcus sp. FDAARGOS_375 582 1 2060307 species Enterococcus sp. FDAARGOS_163 0 1 561 2060306 1 553 2057791 Enterococcus sp. CR-Ec1 species 0 0 species Enterococcus casseliflavus 569 1 37734 0 Enterococcus thailandicus species 785 1 417368 1 1160 1354 0 Enterococcus hirae species 1351 3904 1 Enterococcus faecalis species 0 1007 1 53345 species Enterococcus durans 0 0 species Enterococcus faecium 1352 1 7482 0 1 genus Vagococcus 1905 3 43 2737 1 1065 519472 0 Vagococcus teuberi species 0 Vagococcus penaei species 1 797 633807 6 33969 2 1046 1 0 Melissococcus genus 33970 1040 1 Melissococcus plutonius species 0 1321 2 1 51668 0 1 Tetragenococcus genus 1 1320 51669 0 Tetragenococcus halophilus species 1 0 Lactobacillaceae family 58 42583 118 33958 Lactobacillus genus 0 1 12822 16 1578 978 1075 1 1604 0 species Lactobacillus amylovorus 83683 530 1 Lactobacillus amylolyticus species 0 species Lactobacillus jensenii 0 109790 627 1 52242 503 1 species Lactobacillus gallinarum 0 0 species Lactobacillus kefiranofaciens 267818 415 1 1596 1 1524 0 species Lactobacillus gasseri 0 species Lactobacillus johnsonii 33959 1 1611 4 1576 2620435 no rank 0 0 Lactobacillus sp. D1501 species 1 289 2108362 362 1 2099789 0 Lactobacillus sp. CBA3606 species Lactobacillus sp. wkB8 species 0 509 1 1545702 416 1 2099788 0 Lactobacillus sp. CBA3605 species 1 1370 1584 Lactobacillus delbrueckii species 0 species Lactobacillus helveticus 0 1587 1092 1 1083 1 1579 0 species Lactobacillus acidophilus species Lactobacillus acetotolerans 0 1 438 1600 0 genus 569 1 2767892 Lactobacillus paracollinoides species 0 1 569 240427 2 787 2767881 0 genus 440 1 1625 0 species Lactobacillus sanfranciscensis 0 species Lactobacillus lindneri 53444 1 347 0 genus 1 485 2767877 485 1 148814 0 species Lactobacillus kunkeei 3 2595 2759736 0 genus 1582 1 1008 species Lactobacillus casei 0 0 Lactobacillus paracasei species 1597 847 1 1 740 47715 0 Lactobacillus rhamnosus species 0 genus 2767876 1530 1 species Lactobacillus amylophilus 0 1603 1530 1 0 genus 2 884 2767889 0 Lactobacillus backii species 375175 1 505 Lactobacillus coryniformis species 0 1 379 1610 2767887 5672 4 0 genus 0 species Lactobacillus agilis 896 1 1601 species Lactobacillus salivarius 0 1624 2734 1 0 species Lactobacillus ruminis 1623 1 1507 Lactobacillus acidipiscis species 0 89059 1 535 2767890 1 480 0 genus 0 species Lactobacillus hokkaidonensis 1 480 1193095 2350 3 2742598 genus 0 97478 546 1 0 species Lactobacillus mucosae 0 Lactobacillus reuteri species 1598 1 1200 0 species Lactobacillus fermentum 1613 604 1 1921 3 2767842 genus 0 0 Lactobacillus plantarum species 1590 1 1142 0 species Lactobacillus pentosus 1589 564 1 60520 1 215 Lactobacillus paraplantarum species 0 3355 6 34 1253 1 0 genus Pediococcus 114090 286 1 0 species Pediococcus inopinatus 0 species Pediococcus damnosus 51663 1 692 638 1 1670797 species group 0 species Pediococcus acidilactici 0 1254 1 638 species Pediococcus claussenii 0 658 1 187452 Pediococcus pentosaceus species 0 1047 1 1255 2767886 1201 3 0 genus 1580 704 1 0 species Lactobacillus brevis 0 Lactobacillus zymae species 246 1 267363 Lactobacillus koreensis species 0 251 1 637971 genus 0 1604 3 2767893 1138822 1 463 species Lactobacillus curieae 0 1581 1 503 species Lactobacillus buchneri 0 0 Lactobacillus parabuchneri species 152331 638 1 2767885 1090 2 genus 0 0 species Lactobacillus sakei 1599 1 745 Lactobacillus curvatus species 0 28038 1 345 2767879 5120 6 0 genus 802 1 1602 Lactobacillus alimentarius species 0 1612 1 900 0 Lactobacillus farciminis species 1 1166 1847728 Lactobacillus allii species 0 0 Lactobacillus crustorum species 392416 815 1 0 Lactobacillus heilongjiangensis species 1074467 1 728 0 Lactobacillus ginsenosidimutans species 1007676 709 1 1 626 263855 0 no rank 0 species Lactobacillales bacterium 1 626 1993866 186827 5 8 4239 Aerococcaceae family 1 0 32 1375 4234 7 0 1 Aerococcus genus 576 1 87541 species Aerococcus christensenii 0 1377 635 1 0 Aerococcus viridans species 0 Aerococcus urinaeequi species 51665 1015 1 Aerococcus sanguinicola species 0 760 1 119206 1376 576 1 0 species Aerococcus urinae 1 640 128944 0 species Aerococcus urinaehominis 4 378 67819 0 phylum 1663419 4 378 0 class 1 0 Fimbriimonadales order 1 1663425 4 378 Fimbriimonadaceae family 0 1 377 3 1663426 3 genus Fimbriimonas 1 0 2 374 1005038 2 372 1 1005039 0 species Fimbriimonas ginsengisoli 44810 143 1798711 0 clade phylum Cyanobacteria 0 1 143 44810 1117 20 5 1607 52604 0 order family 0 1890500 320 1 genus 0 44474 1 320 Pleurocapsa minor species 0 1 320 54308 Dermocarpellaceae family 0 1 4 1287 1890498 7 genus Stanieria 1 0 102115 2 1280 3 0 no rank 2642663 1 491 species Stanieria sp. NIES-3757 0 1807358 1 491 0 Stanieria cyanosphaera species 787 1 102116 0 1 class Gloeobacteria 9 307596 1178 6 Gloeobacterales order 1 0 307595 12 1169 5 Gloeobacteraceae family 0 1 4 1157 1890422 3 Gloeobacter genus 0 1 33071 42 1154 3 Gloeobacter kilaueensis species 0 1416614 532 1 0 species Gloeobacter violaceus 33072 580 1 0 1 Nostocales order 12745 33 18 1161 1 0 Nostocaceae family 18 7301 12 1162 3 932 264688 6 Trichormus genus 1 0 Trichormus azollae species 0 456 1 1164 1 470 264691 species Trichormus variabilis 0 1163 8 4 1772 genus Anabaena 0 1 2619674 1179 2 0 no rank 557 1 1647413 Anabaena sp. WA102 species 0 46234 1 622 Anabaena sp. 90 species 0 585 1 1165 species Anabaena cylindrica 0 4585 10 21 1177 0 1 Nostoc genus 0 no rank 7 3343 2593658 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 403 1 1261031 0 species Nostoc sp. PCC 7107 317936 1 352 0 species Nostoc sp. PCC 7120 103690 1 431 Nostoc sp. NIES-3756 species 0 1751286 1 557 0 Nostoc sp. CENA543 species 1869241 1 647 0 species Nostoc sp. PCC 7524 1 472 28072 1 481 1618022 0 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 819 1306274 0 Nostoc flagelliforme species 1 402 272131 0 Nostoc punctiforme species 0 family 8 3691 2661849 0 1 genus Calothrix 8 3691 15 1186 no rank 0 2619626 6 3199 0 Calothrix sp. NIES-2098 species 1954171 597 1 0 species Calothrix sp. NIES-4071 2005469 632 1 Calothrix sp. PCC 7507 species 0 1 358 99598 Calothrix sp. 336/3 species 0 1337936 446 1 764 1 2005461 0 Calothrix sp. NIES-4101 species 2005462 1 402 0 species Calothrix sp. NIES-3974 32054 1 477 0 species Calothrix parietina 0 1 Rivulariaceae family 10 1185 3 881 Rivularia genus 0 1 871 2 373984 3 no rank 0 1 868 2676603 1 868 373994 Rivularia sp. PCC 7116 species 0 no rank 0 508 1 1219117 1 508 1940762 Nostocales cyanobacterium HT-58-2 species 0 family Hapalosiphonaceae 0 1 2 346 1892263 1 genus 0 345 1 1190 0 no rank 1 345 494603 1752063 345 1 species Fischerella sp. NIES-3754 0 subclass 0 1301283 40 11214 order Oscillatoriales 1 0 1150 24 3871 18 family Cyanothecaceae 1 0 1892249 8 361 3 2 353 15 43988 0 1 Cyanothece genus 0 no rank 338 1 2649277 Cyanothece sp. PCC 7425 species 0 1 338 395961 412 3 1892255 2 family Gomontiellaceae 1 0 0 1 Crinalium genus 2 410 1 241421 241425 1 409 0 species Crinalium epipsammum 5 1156 1892254 16 family Oscillatoriaceae 1 0 0 genus 1158 765 2 118323 451 1 0 species Oscillatoria acuminata 0 species Oscillatoria nigro-viridis 1 314 482564 2 375 1 1155738 1 0 genus Moorea 1155739 1 374 0 Moorea producens species 3 644 1892251 2 Coleofasciculaceae family 1 0 642 2 3 63132 1 0 Geitlerinema genus 2648775 639 1 no rank 0 639 1 1173025 0 Geitlerinema sp. PCC 7407 species 1274 3 1892252 0 family 44471 1 442 0 genus 2642155 442 1 0 no rank 442 1 1173027 0 species Microcoleus sp. PCC 7113 0 1 Trichodesmium genus 1 1205 2 832 Trichodesmium erythraeum species 0 1206 1 831 1 0 order Chroococcales 7343 22 4 1118 0 family 1890452 657 2 657 2 102234 1 Cyanobacterium genus 1 0 1 656 379064 Cyanobacterium aponinum species 0 3000 9 1890450 1 family Aphanothecaceae 1 0 0 no rank 2 240 92682 Halothece genus 0 1 240 2 76023 6 2632878 234 1 0 no rank 1 234 65093 0 Halothece sp. PCC 7418 species 1 638 263510 genus 0 1 638 2546360 species 0 638 1 43989 strain Cyanothece sp. ATCC 51142 0 0 genus 1044 2 28070 species 0 477 1 2546359 0 Cyanothece sp. PCC 7822 strain 477 1 497965 0 species 567 1 2546356 65393 567 1 strain Cyanothece sp. PCC 7424 0 2546365 820 2 0 genus 0 species 820 2 2546366 0 Cyanothece sp. PCC 8802 strain 1 383 395962 41431 437 1 0 Cyanothece sp. PCC 8801 strain genus 0 1453359 257 1 713887 257 1 Candidatus Atelocyanobacterium thalassa species 0 0 1 Chroococcaceae family 6 2539 4 1890464 268175 655 1 genus 0 0 no rank 2648896 1 655 2005460 655 1 0 species Chondrocystis sp. NIES-4102 1511 3 669357 4 Geminocystis genus 0 1 0 no rank 2 1507 2625037 Geminocystis sp. NIES-3708 species 0 761 1 1615909 1617448 746 1 species Geminocystis sp. NIES-3709 0 genus 0 102231 1 369 369 1 2623012 0 no rank 0 Gloeocapsa sp. PCC 7428 species 1 369 1173026 Microcystaceae family 1 0 1890449 11 4 1143 genus Microcystis 1 0 1125 5 1132 3 1126 793 1 Microcystis aeruginosa species 0 0 no rank 1 334 2643300 1967666 334 1 species Microcystis sp. MC19 0 0 order 1890505 2 459 1 0 family Chroococcidiopsidaceae 1 1890528 459 2 1 458 54298 genus 0 0 species Chroococcidiopsis thermalis 1 458 54299 1983111 412 1 no rank 0 cyanobacterium endosymbiont of Epithemia turgida species 0 718217 412 1 Synechococcales order 0 1 17175 55 1890424 154 1 0 Prochloraceae family 5 3284 2 1213 3282 4 1218 4 genus Prochlorococcus 0 1 species Prochlorococcus marinus 0 1 2651 1219 2627481 627 2 0 no rank 1501268 1 296 Prochlorococcus sp. MIT 0604 species 0 1501269 331 1 0 species Prochlorococcus sp. MIT 0801 family 0 1890436 2 180 180 2 1152 1 genus Pseudanabaena 0 1 0 no rank 2593292 1 179 species Pseudanabaena sp. PCC 7367 0 1 179 82654 6 1664 2 1890438 1 0 Leptolyngbyaceae family 47251 8 1662 5 genus Leptolyngbya 0 1 1184 376 1 0 species Leptolyngbya boryana 0 no rank 2650499 3 1278 0 Leptolyngbya sp. O-77 species 1 705 1080068 species Leptolyngbya sp. PCC 7376 0 111781 1 294 1 279 1752064 Leptolyngbya sp. NIES-3755 species 0 2303730 2 319 0 family genus Halomicronema 0 1 319 2 170610 1 1209493 318 1 0 Halomicronema hongdechloris species 0 1 family Merismopediaceae 2 1890428 5 532 0 1 genus Synechocystis 11 1142 4 530 519 3 2640012 0 no rank 172 1 1148 0 Synechocystis sp. PCC 6803 species 0 Synechocystis sp. IPPAS B-1465 species 1 171 2116702 Synechocystis sp. PCC 6714 species 0 176 1 1147 10669 33 1890426 35 family Synechococcaceae 0 1 genus 0 146785 290 1 0 Thermosynechococcus elongatus species 146786 1 290 Cyanobium genus 1 0 167375 14 1666 3 species Cyanobium gracile 0 59930 750 1 2627006 1 902 no rank 0 0 Cyanobium sp. NIES-981 species 1851505 1 902 1129 168 8360 26 Synechococcus genus 1 0 no rank 0 2626047 7568 23 542 1 84588 0 Synechococcus sp. WH 8102 species 1916956 270 1 0 Synechococcus sp. SynAce01 species 0 species Synechococcus sp. CC9902 316279 1 178 Synechococcus sp. CC9605 species 0 110662 297 1 585425 301 1 species Synechococcus sp. KORDI-52 0 194 1 374982 0 Synechococcus sp. PCC 73109 species 29410 501 1 0 Synechococcus sp. WH 8103 species Synechococcus sp. JA-2-3B'a(2-13) species 0 321332 1 561 Synechococcus sp. WH 8109 species 0 166314 1 284 species Synechococcus sp. RCC307 0 302 1 316278 Synechococcus sp. UTEX 2973 species 0 1350461 208 1 1827144 307 1 Synechococcus sp. NIES-970 species 0 1 199 195253 Synechococcus sp. PCC 6312 species 0 1 248 1280380 Synechococcus sp. KORDI-100 species 0 species Synechococcus sp. PCC 7003 0 374981 1 200 0 species Synechococcus sp. WH 7803 367 1 32051 species Synechococcus sp. PCC 8807 0 195248 304 1 671 1 321327 0 Synechococcus sp. JA-3-3Ab species 0 Synechococcus sp. PCC 7117 species 1 264 195498 0 Synechococcus sp. PCC 7502 species 471 1 1173263 0 Synechococcus sp. KORDI-49 species 1 370 585423 64471 226 1 0 species Synechococcus sp. CC9311 32049 303 1 Synechococcus sp. PCC 7002 species 0 33070 380 1 0 species Synechococcus lividus 0 species Synechococcus elongatus 32046 244 1 5 13034 318 2 0 1 genus Dactylococcopsis Dactylococcopsis salina species 0 292566 1 313 0 family 1890429 373 1 155977 373 1 genus 0 373 1 155978 species Acaryochloris marina 0 2 200795 9370 44 0 1 phylum Chloroflexi 301297 15 2338 9 Dehalococcoidia class 1 0 9 1202465 1484 5 0 1 Dehalococcoidales order 8 1202464 4 1475 1 0 Dehalococcoidaceae family 2 61434 1467 3 0 1 Dehalococcoides genus species Dehalococcoides mccartyi 0 61435 1171 1 no rank 0 237581 294 1 294 1 1522671 species Dehalococcoides sp. UCH007 0 0 1 Dehalogenimonas genus 11 670486 3 839 552810 1 407 Dehalogenimonas lykanthroporepellens species 0 1839801 421 1 0 Dehalogenimonas formicexedens species 5 1391 1382928 17 class Ardenticatenia 1 0 1374 4 23 1382929 1 0 order Ardenticatenales family Ardenticatenaceae 1 0 3 1351 1382930 4 3 1988031 1347 2 1 0 Candidatus Promineofilum genus 1806508 1344 1 species Candidatus Promineofilum breve 0 7 1067 189775 4 Thermomicrobia class 0 1 0 1 order Thermomicrobiales 3 189776 2 327 family 0 189777 324 1 1 324 499 genus 0 0 species Thermomicrobium roseum 500 324 1 85000 736 4 subclass 0 9 85001 736 4 0 1 Sphaerobacterales order 0 suborder 3 727 255728 0 1 family Sphaerobacteraceae 4 85002 3 727 0 1 genus Sphaerobacter 2 723 5 2056 Sphaerobacter thermophilus species 0 2057 1 718 1 0 class Anaerolineae 6 1935 3 292625 5 1932 292629 4 Anaerolineales order 0 1 0 1 Anaerolineaceae family 4 1928 6 292628 1 874 1324991 no rank 0 1889813 874 1 0 Anaerolineaceae bacterium oral taxon 439 species genus 0 734 1 233189 167964 1 734 Anaerolinea thermophila species 0 2019482 314 1 genus 0 Brevefilum fermentans species 0 1986204 1 314 2019 11 32061 11 class Chloroflexia 1 0 order Chloroflexales 0 1 10 2008 32064 2 1508595 1173 4 suborder 0 family Roseiflexaceae 0 1 1173 4 1508635 10 Roseiflexus genus 1 0 1163 3 120961 8 0 no rank 2609473 1 685 357808 1 685 species Roseiflexus sp. RS-1 0 0 species Roseiflexus castenholzii 120962 470 1 0 suborder 1508594 833 5 Chloroflexaceae family 0 1 833 5 1106 8 genus Chloroflexus 1 0 1107 21 4 825 152260 1 364 0 Chloroflexus aggregans species 221 1108 2 440 1 0 species Chloroflexus aurantiacus strain Chloroflexus sp. Y-400-fl 0 1 219 480224 4 475962 618 5 0 1 class Caldilineae order Caldilineales 1 0 475963 4 614 4 610 3 475964 10 Caldilineaceae family 0 1 233191 17 600 2 Caldilinea genus 0 1 133453 1 583 0 Caldilinea aerophila species no rank 0 294 1 1859062 genus 0 262406 1 294 Thermobaculum terrenum species 0 294 1 166501 38 201174 413878 643 0 1 Actinobacteria phylum 1497346 3 5 1198 Thermoleophilia class 1 0 588673 14 4 1195 order Solirubrobacterales 0 1 320583 18 3 1181 family Conexibacteraceae 0 1 1163 2 191494 41 genus Conexibacter 0 1 191495 1 1122 0 species Conexibacter woesei 0 1 Rubrobacteria class 2 84995 6 1144 order Rubrobacterales 1 0 1142 5 84996 23 1 0 family Rubrobacteraceae 4 1119 8 84997 0 1 genus Rubrobacter 3 1111 26 42255 42256 1 380 species Rubrobacter radiotolerans 0 705 1 49319 Rubrobacter xylanophilus species 0 no rank 0 1752188 670 4 Actinobacteria bacterium IMCC26077 species 0 1 115 1848755 1 167 1848255 0 species Actinobacteria bacterium IMCC25003 Actinobacteria bacterium IMCC19121 species 0 1 185 1848754 0 Actinobacteria bacterium IMCC26103 species 1848756 203 1 1 84992 803 6 0 1 class Acidimicrobiia 0 1 order Acidimicrobiales 23 84993 5 802 568 2 2448023 family 0 682522 1 2 568 Ilumatobacter genus 0 1 0 Ilumatobacter coccineus species 467094 1 567 5 84994 211 2 1 0 family Acidimicrobiaceae 0 genus 1 206 53634 53635 206 1 0 Acidimicrobium ferrooxidans species Actinobacteria class 0 1 591 352509 1760 2025 Geodermatophilales order 1 0 1643682 21 8 2360 family Geodermatophilaceae 1 0 7 2339 85030 108 1 0 Blastococcus genus 5 38501 2 598 0 Blastococcus saxobsidens species 138336 1 593 0 1 genus Modestobacter 11 88138 2 821 0 species Modestobacter marinus 477641 1 810 812 2 1860 13 genus Geodermatophilus 1 0 species Geodermatophilus obscurus 0 1 799 1861 0 order 3 856 622452 856 3 83778 36 family Kineosporiaceae 0 1 0 1 Kineococcus genus 10 33981 820 2 131568 810 1 species Kineococcus radiotolerans 0 47 85004 82484 25 1 0 Bifidobacteriales order 82437 24 2358 31953 0 1 family Bifidobacteriaceae genus 0 2701 719 1 2702 719 1 species Gardnerella vaginalis 0 genus Bifidobacterium 0 1 1678 409 19 78432 981 1 1689 species Bifidobacterium dentium 0 1582 1 1694 0 Bifidobacterium pseudolongum species 430 1 1687 Bifidobacterium coryneforme species 0 0 Bifidobacterium longum species 21952 1 216816 0 Bifidobacterium pseudocatenulatum species 1 5008 28026 1 530 1691 species Bifidobacterium indicum 0 33905 855 1 Bifidobacterium thermophilum species 0 1 14134 1681 Bifidobacterium bifidum species 0 892 1 35760 0 species Bifidobacterium choerinum 158787 1553 1 species Bifidobacterium scardovii 0 2 3814 1686 1368 Bifidobacterium catenulatum species 0 1 0 Bifidobacterium kashiwanohense subspecies 630129 2446 1 0 species Bifidobacterium angulatum 1348 1 1683 species Bifidobacterium breve 0 1685 7309 1 0 species Bifidobacterium animalis 1238 1 28025 1 610 1684 0 species Bifidobacterium asteroides 1680 15245 1 Bifidobacterium adolescentis species 0 542 1 638619 0 species Bifidobacterium actinocoloniiforme Parascardovia genus 0 1 662 2 196082 1 species Parascardovia denticolens 0 78258 661 1 196081 1 266 genus 0 species Scardovia inopinata 0 1 266 78259 11814 19 41 85008 1 0 order Micromonosporales 0 1 family Micromonosporaceae 18 11773 136 28056 34 673534 4 2381 0 1 genus Plantactinospora 3 2347 2631981 0 no rank 1 792 2024580 0 Plantactinospora sp. KBS50 species 0 species Plantactinospora sp. BB1 734 1 2071627 Plantactinospora sp. BC1 species 0 2108470 1 821 1 0 genus Micromonospora 2639 4 33 1873 0 Micromonospora aurantiaca species 873 1 47850 768 1 1003110 0 species Verrucosispora maris 1 965 2617518 no rank 0 965 1 648999 0 Micromonospora sp. L5 species 1865 85 6 5390 genus Actinoplanes 1 0 1866 1140 1 species Actinoplanes missouriensis 0 1000 1 196914 Actinoplanes friuliensis species 0 0 no rank 2626549 3165 3 0 species Actinoplanes sp. SE50 900 1 2033844 1 1365 649831 0 Actinoplanes sp. N902-109 species 134676 1 900 0 species Actinoplanes sp. SE50/110 1 0 Salinispora genus 9 168694 3 1227 626 1 168695 species Salinispora tropica 0 species Salinispora arenicola 0 592 1 168697 no rank 0 217 1 52018 0 species Actinobacteria bacterium IMCC26256 217 1 1650658 85012 66 16 7627 order Streptosporangiales 0 1 3310 5 2004 21 family Streptosporangiaceae 1 0 83681 21 1910 2 Nonomuraea genus 1 0 1889 1 2593643 0 no rank 1909395 1 1889 0 Nonomuraea sp. ATCC 55076 species 2 1379 16 2000 1 0 genus Streptosporangium Streptosporangium roseum species 0 1363 1 2001 Nocardiopsaceae family 0 1 83676 59 7 3036 2 484 2 83677 1 0 Thermobifida genus 1 482 2021 0 species Thermobifida fusca 1 0 genus Nocardiopsis 2493 4 48 2013 0 species Nocardiopsis gilva 743 1 280236 1 980 2014 Nocardiopsis dassonvillei species 0 0 species Nocardiopsis alba 53437 1 722 23 2012 3 1215 1 0 family Thermomonosporaceae 2019 14 1192 2 Thermomonospora genus 0 1 1 1178 2020 Thermomonospora curvata species 0 85007 564 163 71382 Corynebacteriales order 0 1 1 0 Corynebacteriaceae family 52 22453 164 1653 421 1716 51 22289 0 1 genus Corynebacterium 575200 406 1 Corynebacterium maris species 0 0 species Corynebacterium resistens 258224 221 1 0 Corynebacterium imitans species 156978 614 1 0 species Corynebacterium doosanense 1 399 1121358 1 415 43771 Corynebacterium urealyticum species 0 1072256 494 1 Corynebacterium uterequi species 0 species Corynebacterium sphenisci 0 478 1 191493 169292 399 1 species Corynebacterium aurimucosum 0 330 1 160386 species Corynebacterium casei 0 35757 334 1 0 species Corynebacterium cystitidis 191610 269 1 0 species Corynebacterium atypicum 455 1 1727 0 Corynebacterium variabile species 0 species Corynebacterium simulans 146827 609 1 35755 197 1 0 Corynebacterium kutscheri species 1697 225 1 species Corynebacterium ammoniagenes 0 1 614 225326 0 species Corynebacterium halotolerans 1652495 1 282 0 species Corynebacterium crudilactis 0 Corynebacterium kroppenstedtii species 244 1 161879 932 1 38289 Corynebacterium jeikeium species 0 Corynebacterium stationis species 0 1705 482 1 0 no rank 2624378 2 564 species Corynebacterium sp. ATCC 6931 0 1487956 1 345 0 species Corynebacterium sp. NML98-0116 702967 1 219 0 Corynebacterium lactis species 1 309 1231000 0 Corynebacterium mustelae species 1 275 571915 89154 1 513 0 species Corynebacterium terpenotabidum 1223514 1 584 species Corynebacterium humireducens 0 1404244 1 515 0 species Corynebacterium glyciniphilum 1230998 1 709 0 Corynebacterium frankenforstense species 42817 346 1 0 species Corynebacterium argentoratense 0 species Corynebacterium callunae 1 522 1721 Corynebacterium flavescens species 0 1 245 28028 0 Corynebacterium camporealensis species 354 1 161896 1 424 136857 species Corynebacterium testudinoris 0 65058 502 1 0 Corynebacterium ulcerans species 161899 465 1 0 Corynebacterium singulare species 349751 487 1 0 Corynebacterium marinum species 0 Corynebacterium phocae species 161895 1 268 Corynebacterium glutamicum species 0 1718 1 653 108486 483 1 0 species Corynebacterium falsenii 0 species [Brevibacterium] flavum 373 1 92706 species Corynebacterium glaucum 0 187491 399 1 1408191 1 451 0 species Corynebacterium deserti 0 Corynebacterium epidermidicanis species 208 1 1050174 43770 1 860 0 species Corynebacterium striatum 1719 376 1 Corynebacterium pseudotuberculosis species 0 species Corynebacterium vitaeruminis 0 1 666 38305 0 Corynebacterium diphtheriae species 601 1 1717 Corynebacterium aquilae species 0 1 416 203263 Corynebacterium efficiens species 0 569 1 152794 species Corynebacterium ureicelerivorans 0 401472 1 332 no rank 0 697024 2 302 1 0 Lawsonella genus 5 1847725 302 2 species Lawsonella clevelandensis 0 1 297 1528099 Dietziaceae family 1 0 884 4 85029 7 genus Dietzia 1 0 3 877 37914 6 0 no rank 2617939 1 489 Dietzia sp. oral taxon 368 species 0 489 1 712270 499555 1 382 Dietzia timorensis species 0 3 356 2 316606 1 0 family Segniliparaceae 286801 3 354 2 genus Segniliparus 1 0 1 351 286802 Segniliparus rotundus species 0 1 0 Mycobacteriaceae family 24689 57 64 1762 960 1763 34 13515 1 0 genus Mycobacterium 2642494 5581 13 no rank 0 species Mycobacterium sp. VKM Ac-1817D 0 375 1 1273687 species Mycobacterium sp. JLS 0 164757 388 1 0 Mycobacterium sp. NRRL B-3805 species 1 502 1570328 Mycobacterium sp. WY10 species 0 1920667 1 438 Mycobacterium sp. EPa45 species 0 1545728 443 1 562 1 1682113 0 Mycobacterium sp. YC-RL4 species 1 236 1561223 0 species Mycobacterium sp. QIA-37 Mycobacterium sp. MOTT36Y species 0 1168287 131 1 164756 1 375 0 species Mycobacterium sp. MCS 0 Mycobacterium sp. PYR15 species 2051552 407 1 0 species Mycobacterium sp. KMS 1 403 189918 species Mycobacterium sp. JS623 0 508 1 212767 813 1 1879023 0 species Mycobacterium sp. djl-10 species Mycobacterium leprae 0 1769 1 167 0 species Mycobacterium marinum 1 442 1781 0 species group 2249310 1 432 432 1 722731 Mycobacterium shigaense species 0 0 species Mycobacterium haemophilum 29311 420 1 species Mycobacterium ulcerans 0 371 1 1809 261524 1 369 0 species Mycobacterium liflandii species group 0 77643 4 1103 0 Mycobacterium canettii species 1 281 78331 822 3 1773 296 species Mycobacterium tuberculosis 1 0 biotype Mycobacterium africanum 0 257 1 33894 0 Mycobacterium bovis biotype 1 269 1765 1 712 482462 species Mycobacterium dioxanotrophicus 0 1768 475 1 Mycobacterium kansasii species 0 species group 0 120793 8 2483 0 species Mycobacterium colombiense 339268 1 429 species Mycobacterium intracellulare 0 1 1767 152 754 4 0 Mycobacterium yongonense subspecies 170 1 1203599 102 1 35617 Mycobacterium indicus pranii subspecies 0 222805 1 330 0 subspecies Mycobacterium chimaera species Mycobacterium marseillense 0 1 333 701042 0 Mycobacterium avium species 1764 1 869 0 species Mycobacterium paraintracellulare 1 98 1138383 899 2 1073531 0 genus 0 Mycobacterium terrae species 1788 504 1 395 1 875328 0 Mycobacterium sinense species genus 0 2306 5 670516 757 1 36809 Mycobacterium abscessus species 0 83262 420 1 species Mycobacterium immunogenum 0 0 species Mycobacterium chelonae 1 326 1774 1578165 380 1 species Mycobacterium saopaulense 0 1520670 1 423 0 species Mycobacterium stephanolepidis genus 0 1866885 13 7525 720 1 1791 0 Mycobacterium aurum species 556 1 110539 0 Mycobacterium vanbaalenii species 704 1 1804 0 species Mycobacterium gilvum species Mycobacterium thermoresistibile 0 1797 553 1 species Mycobacterium fortuitum 0 1 378 1766 0 Mycobacterium goodii species 134601 1 653 Mycobacterium rhodesiae species 0 451 1 36814 species Mycobacterium vaccae 0 633 1 1810 1800 600 1 species Mycobacterium chubuense 0 0 Mycobacterium litorale species 1 442 758802 1772 711 1 species Mycobacterium smegmatis 0 Mycobacterium phlei species 0 1771 622 1 species Mycobacterium neoaurum 0 1 502 1795 2 380 1 697025 0 1 Hoyosella genus 639313 1 379 0 Hoyosella subflava species 3154 9 38 85026 1 0 Gordoniaceae family 0 1 genus Gordonia 8 3116 68 2053 0 species Gordonia bronchialis 362 1 2054 2055 1 532 Gordonia terrae species 0 1136941 409 1 0 species Gordonia phthalatica 0 Gordonia iterans species 303 1 1004901 Gordonia polyisoprenivorans species 0 84595 468 1 2657482 2 974 no rank 0 Gordonia sp. YC-JH1 species 0 2059875 1 447 0 Gordonia sp. KTR9 species 337191 527 1 0 1 Tsukamurellaceae family 7 85028 1211 4 2060 23 1204 3 genus Tsukamurella 0 1 57704 731 1 species Tsukamurella tyrosinosolvens 0 2061 1 450 species Tsukamurella paurometabola 0 85025 131 31 17769 family Nocardiaceae 0 1 7 6355 129 1817 1 0 genus Nocardia 0 species Nocardia cyriacigeorgica 1567 1 135487 0 Nocardia seriolae species 37332 872 1 species Nocardia nova 0 1 687 37330 0 Nocardia brasiliensis species 37326 1390 1 901 1 37329 Nocardia farcinica species 0 455432 809 1 0 Nocardia terpenica species 1827 397 23 11283 genus Rhodococcus 1 0 species Rhodococcus rhodochrous 0 1829 1 428 1 662 132919 species Rhodococcus jostii 0 0 Rhodococcus opacus species 1457 1 37919 334542 1 335 0 species Rhodococcus qingshengii 0 Rhodococcus pyridinivorans species 1 374 103816 0 species Rhodococcus hoagii 1 539 43767 0 Rhodococcus fascians species 503 1 1828 0 Rhodococcus aetherivorans species 583 1 191292 4873 12 192944 no rank 0 0 Rhodococcus sp. B7740 species 1564114 1 543 1045808 1 313 species Rhodococcus sp. YL-1 0 1 213 679318 species Rhodococcus sp. WMMA185 0 species Rhodococcus sp. MTM3W5.2 0 1805827 1 468 0 species Rhodococcus sp. PBTS 2 1653479 1 424 1 279 1570939 0 species Rhodococcus sp. 2G 1807790 316 1 Rhodococcus sp. BH4 species 0 Rhodococcus sp. 008 species 0 1723645 1 308 Rhodococcus sp. WB1 species 0 1033922 763 1 295 1 935199 0 species Rhodococcus sp. p52 0 Rhodococcus sp. PBTS 1 species 1653478 476 1 0 species Rhodococcus sp. H-CA8f 475 1 1727214 1 527 1833 0 Rhodococcus erythropolis species 605 1 1830 Rhodococcus ruber species 0 2 85014 4 680 1 0 order Glycomycetales Glycomycetaceae family 1 0 678 3 85034 30 0 1 genus Stackebrandtia 2 648 4 283810 1 644 283811 0 Stackebrandtia nassauensis species 0 1 Micrococcales order 50303 142 551 85006 0 1 Cellulomonadaceae family 30 85016 2258 6 1707 31 2228 5 Cellulomonas genus 0 1 597 1 1711 0 Cellulomonas flavigena species species Cellulomonas gilvus 0 1 499 11 Cellulomonas fimi species 0 1 617 1708 0 no rank 1 484 2620175 1 484 2003551 Cellulomonas sp. PSBB021 species 0 577468 1 53 0 no rank 2038 1 53 0 genus species Tropheryma whipplei 0 2039 53 1 193 3 2 85022 0 1 Jonesiaceae family 43673 6 191 2 genus Jonesia 1 0 1 185 43674 Jonesia denitrificans species 0 39 16899 1268 657 family Micrococcaceae 0 1 genus Sinomonas 1 0 2 509 596707 4 Sinomonas atrocyanea species 0 505 1 37927 1 0 genus Micrococcus 2 538 8 1269 1270 530 1 species Micrococcus luteus 0 1742992 1 2 426 genus Paenarthrobacter 1 0 425 1 43663 Paenarthrobacter aurescens species 0 1672 4 1742993 13 Pseudarthrobacter genus 0 1 85085 547 1 species Pseudarthrobacter chlorophenolicus 0 498 1 361575 species Pseudarthrobacter phenanthrenivorans 0 species Pseudarthrobacter sulfonivorans 0 1 614 121292 21 57493 4 1786 1 0 genus Kocuria 446860 1 616 Kocuria flava species 0 1 586 72000 0 species Kocuria rhizophila 1 563 71999 0 Kocuria palustris species 1 0 Arthrobacter genus 161 1663 15 8587 942 1 37928 Arthrobacter crystallopoietes species 0 0 no rank 12 6369 235627 2020486 1 566 Arthrobacter sp. YN species 0 583 1 1704044 species Arthrobacter sp. ERGS1:01 0 2079227 1 514 Arthrobacter sp. PGP41 species 0 1494608 510 1 species Arthrobacter sp. PAMC 25486 0 1806905 1 403 Arthrobacter sp. ZXY-2 species 0 459 1 1849032 species Arthrobacter sp. U41 0 664 1 1652545 species Arthrobacter sp. YC-RL1 0 0 Arthrobacter sp. QXT-31 species 1 645 1357915 1690248 646 1 Arthrobacter sp. LS16 species 0 290399 1 639 Arthrobacter sp. FB24 species 0 0 species Arthrobacter sp. Rue61a 474 1 1118963 266 1 1771959 species Arthrobacter sp. ATCC 21022 0 656366 1115 1 0 Arthrobacter alpinus species genus 0 2078575 274 1 Arthrobacter sp. IHBB 11108 species 0 1 274 1618207 1039 2 3 1742989 0 1 Glutamicibacter genus 256701 1036 1 Glutamicibacter arilaitensis species 0 0 genus 1645 1 196 Renibacterium salmoninarum species 0 1646 1 196 1 0 Rothia genus 4 32207 3 1026 1 333 2047 0 Rothia dentocariosa species 43675 1 689 0 species Rothia mucilaginosa 2 189 3 1868332 1 0 genus Neomicrococcus 0 species Neomicrococcus aestuarii 556325 186 1 30 85021 2403 9 0 1 Intrasporangiaceae family 2 498 53457 5 genus Janibacter 0 1 857417 493 1 0 Janibacter indicus species 267408 16 2 704 Arsenicicoccus genus 0 1 0 no rank 1 688 2663846 0 Arsenicicoccus sp. oral taxon 190 species 1658671 688 1 0 1 genus Intrasporangium 6 53357 421 2 0 species Intrasporangium calvum 415 1 53358 0 1 genus Serinicoccus 2 750 16 265976 1758689 1 734 Serinicoccus sp. JLT9 species 0 1 0 family Dermacoccaceae 1658 7 15 145357 1 0 genus Dermacoccus 3 57495 649 2 1274 646 1 species Dermacoccus nishinomiyaensis 0 Kytococcus genus 0 1 501 2 57499 8 1276 493 1 species Kytococcus sedentarius 0 493 2 745364 7 Luteipulveratus genus 1 0 571913 486 1 Luteipulveratus mongoliensis species 0 3596 10 85020 26 family Dermabacteraceae 1 0 0 genus 1 377 36739 1630135 377 1 0 species Dermabacter vaginalis Brachybacterium genus 0 1 43668 51 6 3019 1331682 669 1 0 species Brachybacterium ginsengisoli 0 Brachybacterium sp. VR2415 species 2017485 1 444 43669 640 1 Brachybacterium faecium species 0 1 604 2623841 no rank 0 0 species Brachybacterium sp. P6-10-X1 1903186 604 1 0 species Brachybacterium sp. VM2412 2017484 1 611 0 1 genus Devriesea 174 2 1 472568 Devriesea agamarum species 0 173 1 472569 0 1 Sanguibacteraceae family 720 3 2 145360 2 718 20 60919 0 1 genus Sanguibacter 0 Sanguibacter keddieii species 1 698 60920 550 3 1 125316 0 1 Beutenbergiaceae family 84756 35 549 2 Beutenbergia genus 0 1 84757 1 514 0 Beutenbergia cavernae species 46 17149 161 85023 0 1 family Microbacteriaceae 69578 11 3 1341 genus Cryobacterium 1 0 1 739 670052 0 Cryobacterium arcticum species no rank 0 1 591 2649013 species Cryobacterium sp. LW097 0 591 1 1978566 2034 94 1703 4 genus Curtobacterium 1 0 0 no rank 257496 1133 2 0 Curtobacterium sp. MR_MD2014 species 1561023 599 1 1905847 1 534 Curtobacterium sp. BH-2-1-1 species 0 1 476 69373 0 species Curtobacterium pusillum 1 0 genus Agromyces 2 771 7 33877 453304 764 1 Agromyces aureus species 0 2 466 1 447237 1 0 genus Frondihabitans no rank 0 1 465 2626248 1 465 1795630 0 Frondihabitans sp. PAMC 28766 species 514 3 16 33886 1 0 Rathayibacter genus 33888 377 1 0 Rathayibacter tritici species 0 species Rathayibacter toxicus 121 1 145458 genus 0 1434032 56 1 Pontimonas salivibrio species 0 1159327 56 1 2 213 1655488 no rank 0 clade 0 1655489 2 213 213 2 529883 genus 0 Rhodoluna lacicola species 0 529884 105 1 1 108 535712 species Candidatus Rhodoluna planktonica 0 Leifsonia genus 0 1 110932 33 1150 2 1 1117 1575 species Leifsonia xyli 0 Cnuibacter genus 0 1 489 2 1759331 2 1619308 1 487 0 species Cnuibacter physcomitrellae 537 2 2 518733 0 1 Microterricola genus 535 1 412690 species Microterricola viridarii 0 genus 0 1 281 1705353 Aurantimicrobium minutum species 0 1 281 708131 123 33882 14 6448 1 0 Microbacterium genus no rank 0 2609290 8 3744 367477 436 1 0 species Microbacterium sp. XT11 0 Microbacterium sp. str. 'China' species 2103230 1 418 532 1 1795053 0 Microbacterium sp. PAMC 28756 species 430 1 1696072 species Microbacterium sp. CGR1 0 1938334 339 1 0 species Microbacterium sp. TPU 3598 640 1 1714373 0 Microbacterium sp. No. 7 species species Microbacterium sp. BH-3-3-3 0 1906742 512 1 437 1 1916917 Microbacterium sp. 1.5R species 0 species Microbacterium aurum 0 36805 675 1 0 species Microbacterium hominis 162426 594 1 0 Microbacterium paludicola species 300019 573 1 0 species Microbacterium chocolatum 84292 1 286 0 Microbacterium testaceum species 1 453 2033 2628 6 1573 65 Clavibacter genus 1 0 species Clavibacter michiganensis 1 0 28447 546 2563 5 0 Clavibacter nebraskensis subspecies 31963 503 1 subspecies Clavibacter capsici 0 496 1 1874630 0 Clavibacter sepedonicus subspecies 609 1 31964 0 subspecies Clavibacter insidiosus 409 1 33014 genus 0 337004 391 1 391 1 279828 0 Microcella alkaliphila species 3 759 85019 4 family Brevibacteriaceae 0 1 genus Brevibacterium 0 1 755 2 1696 29 1703 1 726 0 Brevibacterium linens species family 0 85018 2 252 0 1 Dermatophilus genus 2 1862 252 2 0 Dermatophilus congolensis species 1863 1 250 1 0 Promicromonosporaceae family 3262 9 41 85017 1 0 genus Xylanimonas 725 2 2 186188 186189 1 723 0 Xylanimonas cellulosilytica species 0 1 Cellulosimicrobium genus 1282 3 18 157920 no rank 0 1 613 2624466 1 613 1980001 species Cellulosimicrobium sp. TH-20 0 1710 1 651 species Cellulosimicrobium cellulans 0 3 1214 254250 26 genus Isoptericola 0 1 0 species Isoptericola dokdonensis 555 1 372663 0 Isoptericola variabilis species 139208 1 633 order 0 549 3 622450 Actinopolysporaceae family 1 0 622451 12 549 3 0 1 Actinopolyspora genus 8 1849 2 537 414996 1 529 species Actinopolyspora erythraea 0 order Pseudonocardiales 1 0 42 23739 85010 86 1 0 family Pseudonocardiaceae 353 2070 41 23653 5 142577 2 530 0 1 genus Prauserella 530584 525 1 0 Prauserella marina species 96 1847 8 4530 1 0 Pseudonocardia genus 0 no rank 6 3584 2619320 445576 645 1 Pseudonocardia sp. AL041005-10 species 0 Pseudonocardia sp. EC080610-09 species 0 1 643 1688404 1690815 1 582 species Pseudonocardia sp. HH130630-07 0 1096868 552 1 0 Pseudonocardia sp. EC080625-04 species Pseudonocardia sp. EC080619-01 species 0 1096856 1 635 1641402 1 527 Pseudonocardia sp. HH130629-09 species 0 240495 850 1 0 species Pseudonocardia dioxanivorans 6 3162 65496 49 genus Actinoalloteichus 0 1 0 species Actinoalloteichus hoggarensis 1 596 1470176 2644606 2 1330 0 no rank 1612551 1 700 species Actinoalloteichus sp. GBA129-24 0 2072503 1 630 0 species Actinoalloteichus sp. AHMU CJ021 1 481 340345 Actinoalloteichus hymeniacidonis species 0 Actinoalloteichus sp. ADI127-7 species 0 1612552 706 1 2638 3 40566 48 Actinosynnema genus 1 0 40567 1286 1 Actinosynnema mirum species 0 1304 1 42197 Actinosynnema pretiosum species 0 Alloactinosynnema genus 0 1 2 777 674734 16 1 761 2636053 no rank 0 0 species Alloactinosynnema sp. L-07 761 1 1653480 0 1 Kutzneria genus 6 43356 1277 2 0 species Kutzneria albida 43357 1 1271 genus Saccharomonospora 1 0 1851 1 422 2 1852 1 421 0 species Saccharomonospora viridis 2 2071 1039 2 1 0 Saccharothrix genus Saccharothrix espanaensis species 0 103731 1037 1 0 1 genus Kibdelosporangium 3 2029 2 912 0 species Kibdelosporangium phytohabitans 860235 1 909 0 1 genus Saccharopolyspora 6 1835 2 983 1 977 1836 0 Saccharopolyspora erythraea species 7 6187 1813 93 Amycolatopsis genus 0 1 0 no rank 2618356 2 1808 species Amycolatopsis sp. BJA-103 0 1911175 1 835 1896961 973 1 species Amycolatopsis sp. AA4 0 674 1 208439 Amycolatopsis japonica species 0 826 1 1814 0 species Amycolatopsis methanolica 0 Amycolatopsis orientalis species 1549 1 31958 0 species Amycolatopsis mediterranei 33910 1 1237 7 165301 843 2 1 0 genus Lentzea species Lentzea guizhouensis 0 1 836 1586287 414714 4 4 1398 Catenulisporales order 0 1 414877 20 3 1394 Catenulisporaceae family 0 1 11 414878 1374 2 0 1 Catenulispora genus 0 species Catenulispora acidiphila 304895 1363 1 order Propionibacteriales 0 1 33 12733 85009 46 0 1 family Nocardioidaceae 128 85015 4529 13 1 0 Kribbella genus 667 2 5 182639 0 species Kribbella flavida 1 662 182640 0 1 genus Aeromicrobium 2 517 2 2040 2041 1 515 0 species Aeromicrobium erythreum 2 116071 637 2 0 1 Micropruina genus 1 635 75385 Micropruina glycogenica species 0 2044 8 2 816 genus Pimelobacter 0 1 0 Pimelobacter simplex species 1 808 2045 genus Nocardioides 1 0 1764 4 1839 36 2615069 568 1 0 no rank 568 1 196162 Nocardioides sp. JS614 species 0 1 514 2045452 species Nocardioides sp. 78 0 0 Nocardioides dokdonensis species 646 1 450734 1 0 family Propionibacteriaceae 102 31957 8158 19 29404 10 533 2 genus Microlunatus 1 0 523 1 29405 species Microlunatus phosphovorus 0 genus Cutibacterium 1 0 4 1410 1912216 15 species Cutibacterium granulosum 0 331 1 33011 Cutibacterium acnes species 0 1 436 1747 0 Cutibacterium avidum species 1 628 33010 genus Tessaracoccus 1 0 2496 5 72763 36 species Tessaracoccus flavescens 0 399497 1 536 0 Tessaracoccus aquimaris species 1332264 738 1 0 species Tessaracoccus flavus 1610493 1 527 no rank 0 659 1 2635419 species Tessaracoccus sp. T2.5-30 0 1 659 1909732 866 2 1912215 3 genus Acidipropionibacterium 0 1 1 863 1748 species Acidipropionibacterium acidipropionici 0 genus 0 2801844 497 1 497 1 1750 0 species Pseudopropionibacterium propionicum Propionibacterium genus 0 1 1743 40 3 1594 2608905 1 304 no rank 0 0 Propionibacterium sp. oral taxon 193 species 671223 1 304 Propionibacterium freudenreichii species 0 1744 1 1250 genus 0 1 660 203133 1 660 2633994 no rank 0 1871034 660 1 Propionimicrobium sp. Marseille-P3275 species 0 230 3 4 1643683 0 1 Acidothermales order Acidothermaceae family 0 1 2 226 85032 3 genus 0 223 1 28048 1 223 28049 Acidothermus cellulolyticus species 0 2805 7 85013 24 order Frankiales 0 1 44 74712 6 2781 0 1 family Frankiaceae Frankia genus 1 0 1854 45 2737 5 1859 652 1 0 Frankia alni species 0 species Frankia inefficax 298654 891 1 1 417 106370 0 Frankia casuarinae species 732 1 2632575 no rank 0 0 Frankia sp. EAN1pec species 298653 732 1 no rank 0 475 2 1643818 147067 2 475 2 Thermobispora genus 1 0 species Thermobispora bispora 0 2006 1 473 1643684 2 3 781 Nakamurellales order 0 1 0 1 Nakamurellaceae family 8 85031 779 2 53460 1 771 genus 0 species Nakamurella multipartita 0 1 771 53461 9368 18 2037 14 order Actinomycetales 1 0 0 1 family Actinomycetaceae 1713 2049 17 9354 1653174 1 401 genus 0 Actinotignum schaalii species 0 59505 401 1 genus 0 365 1 2529408 Actinomyces meyeri species 0 1 365 52773 141 1654 4414 9 1 0 genus Actinomyces 0 species Actinomyces sp. VUL4_3 1912795 1 239 0 Actinomyces gaoshouyii species 1 411 1960083 0 no rank 1915 3 2609248 1851395 512 1 0 species Actinomyces sp. Chiba101 0 Actinomyces sp. oral taxon 897 species 1 592 2081702 811 1 712122 species Actinomyces sp. oral taxon 414 0 544580 1 655 species Actinomyces oris 0 111015 635 1 Actinomyces radicidentis species 0 Actinomyces pacaensis species 0 418 1 1852377 1 0 Trueperella genus 2 796 7 1069494 species Trueperella pyogenes 0 1 789 1661 genus 0 1 458 28263 28264 458 1 species Arcanobacterium haemolyticum 0 2050 59 1207 2 genus Mobiluncus 0 1 species Mobiluncus curtisii 0 2051 1 1148 2039638 6 1973 12 order Candidatus Nanopelagicales 0 1 1967 11 2162846 0 family 1485 7 12 622681 1 0 Candidatus Planktophila genus 169 1 1884904 0 species Candidatus Planktophila sulfonica 1 236 1884913 0 species Candidatus Planktophila lacus 1884914 436 1 species Candidatus Planktophila dulcis 0 species Candidatus Planktophila vernalis 0 1 196 1884907 147 1 573600 Candidatus Planktophila limnetica species 0 1 289 1884905 0 species Candidatus Planktophila versatilis genus Candidatus Nanopelagicus 0 1 4 482 2039639 4 Candidatus Nanopelagicus limnes species 0 1884634 147 1 0 species Candidatus Nanopelagicus hibericus 1 151 1884915 1884916 1 180 0 Candidatus Nanopelagicus abundans species 1 0 order Streptomycetales 147 85011 82 68710 515 2062 81 68563 0 1 family Streptomycetaceae Streptomyces genus 1 0 75 63971 1883 1875 1930 1061 1 species Streptomyces scabiei 0 408015 709 1 0 species Streptomyces xiamenensis 0 Streptomyces sp. S10(2016) species 1 767 1783515 Streptomyces rubrolavendulae species 0 1 606 285473 630 1 193462 0 species Streptomyces niveus 0 Streptomyces pactum species 1 1391 68249 1 581 68202 0 Streptomyces fulvissimus species 0 species Streptomyces autolyticus 75293 966 1 1 1161 379067 species Streptomyces bingchenggensis 0 species Streptomyces albus 0 1446 1 1888 species Streptomyces clavuligerus 0 1901 1 700 Streptomyces leeuwenhoekii species 0 1437453 669 1 0 Streptomyces puniciscabiei species 1 866 164348 613 1 1935 0 Streptomyces violaceoruber species 68214 1 834 Streptomyces griseochromogenes species 0 1355015 586 1 0 Streptomyces pluripotens species 1912 1 1723 0 species Streptomyces hygroscopicus 0 Streptomyces gilvosporeus species 553510 958 1 0 Streptomyces avermitilis species 33903 1 757 1477431 1526 2 0 species group 0 species Streptomyces sampsonii 42239 1 745 species Streptomyces coelicolor 0 1902 1 781 1 837 67267 Streptomyces alboflavus species 0 species Streptomyces reticuli 0 1926 1 823 68280 1 1024 Streptomyces violaceusniger species 0 0 Streptomyces lavendulae species 1914 696 1 0 species Streptomyces parvulus 146923 1 627 1 819 1616117 Streptomyces formicae species 0 0 Streptomyces vietnamensis species 362257 926 1 0 Streptomyces pratensis species 1169025 557 1 0 Streptomyces albireticuli species 1940 1 707 0 Streptomyces alfalfae species 1 842 1642299 0 no rank 18625 24 2593676 0 Streptomyces sp. WAC00288 species 2094021 1 565 0 Streptomyces sp. CMB-StM0423 species 2059884 1 1045 1 749 1812480 Streptomyces sp. fd1-xmd species 0 Streptomyces sp. CCM_MD2014 species 0 766 1 1561022 0 Streptomyces sp. 769 species 1 949 1262452 0 species Streptomyces sp. 3211 1 757 1964449 species Streptomyces sp. CFMR 7 0 594 1 1649184 1972846 1 590 0 species Streptomyces sp. Sge12 570 1 1837283 0 Streptomyces sp. S8 species species Streptomyces sp. PAMC 26508 0 1265601 583 1 Streptomyces sp. P3 species 0 969 1 2135430 species Streptomyces sp. CNQ-509 0 444103 1 913 Streptomyces sp. RTd22 species 0 1841249 941 1 0 species Streptomyces sp. TN58 1 667 234612 680 1 1661694 0 species Streptomyces sp. Tue 6075 1 1069 1495638 0 species Streptomyces sp. M56 769 1 1849967 0 species Streptomyces sp. SAT1 1725411 1 1104 0 Streptomyces sp. CdTB01 species species Streptomyces sp. 4F 0 1751294 1 689 1984801 1 647 species Streptomyces sp. CLI2509 0 465541 729 1 0 Streptomyces sp. Mg1 species 0 species Streptomyces sp. FR-008 1 746 206662 1 767 1961713 0 Streptomyces sp. MOE7 species 862751 1 767 0 species Streptomyces sp. SirexAA-E 1916 1 742 species Streptomyces lividans 0 2049881 751 1 Streptomyces sp. XZHG99 species 0 2 1378 629295 0 species group 661 1 1482558 species subgroup 0 1 661 1908 0 Streptomyces globisporus species species subgroup 0 717 1 1482596 Streptomyces griseus species 0 717 1 1911 1 657 68192 Streptomyces cyaneogriseus species 0 0 Streptomyces ambofaciens species 824 1 1889 1 827 68570 Streptomyces albulus species 0 Streptomyces lincolnensis species 0 1915 1 946 Streptomyces peucetius species 0 1950 1 715 695 1 1907 0 species Streptomyces glaucescens species Streptomyces xinghaiensis 0 1038928 1 697 1 835 29303 0 species Streptomyces cattleya 840 1 38300 species Streptomyces pristinaespiralis 0 1374 1 54571 0 Streptomyces venezuelae species 958 1 1969 0 Streptomyces chartreusis species 0 species Streptomyces collinus 42684 1 725 1 1115 92644 0 species Streptomyces malaysiensis 1 2246 47763 Streptomyces lydicus species 0 1971 1 738 Streptomyces noursei species 0 2063 34 5 4077 Kitasatospora genus 1 0 0 Kitasatospora aureofaciens species 1 818 1894 1119 1 2066 0 Kitasatospora setae species no rank 0 1381 1 2633591 1 1381 2018025 Kitasatospora sp. MMS16-BH015 species 0 725 1 68173 0 species Kitasatospora albolonga 0 1 class Coriobacteriia 142 84998 57516 30 1 0 Eggerthellales order 277 1643822 26332 16 15 26055 3027 1643826 1 0 family Eggerthellaceae 1001 1 1981050 0 genus 1001 1 1944646 0 species Phoenicibacter massiliensis 3118 2 5 447020 1 0 genus Adlercreutzia 0 Adlercreutzia equolifaciens species 1 3113 446660 0 1 genus Eggerthella 163 84111 7961 3 2648737 2908 1 no rank 0 502558 2908 1 0 Eggerthella sp. YY7918 species species Eggerthella lenta 0 84112 1 4890 1 84108 2476 2 1 0 genus Slackia 84110 1 2475 species Slackia heliotrinireducens 0 6520 3 644652 23 Gordonibacter genus 1 0 1841863 1 3163 0 species Gordonibacter massiliensis 3334 1 1335613 Gordonibacter urolithinfaciens species 0 0 genus 1307 1 79603 0 species Denitrobacterium detoxificans 79604 1307 1 genus Cryptobacterium 0 1 84162 2 645 2 0 species Cryptobacterium curtum 643 1 84163 0 1 order Coriobacteriales 31042 13 140 84999 61 1643824 6 7939 1 0 family Atopobiaceae 1 0 Olsenella genus 7059 4 115 133925 0 no rank 1367 1 2638792 712411 1367 1 Olsenella sp. oral taxon 807 species 0 0 species Olsenella sp. Marseille-P2300 1 3446 1805478 2131 1 133926 0 species Olsenella uli 819 1 2767353 0 genus 0 species Atopobium parvulum 819 1 1382 238 84107 6 22963 0 1 family Coriobacteriaceae 1714 1 84113 0 no rank 1531429 1 1714 species Coriobacteriaceae bacterium 68-1-3 0 genus Coriobacterium 1 0 2 1231 33870 4 0 Coriobacterium glomerans species 1227 1 33871 102106 41 2 19780 Collinsella genus 0 1 1 19739 74426 0 Collinsella aerofaciens species 7 2878 200930 phylum 0 class 0 68337 2878 7 Deferribacterales order 0 1 7 2878 191393 5 Deferribacteraceae family 1 0 6 2873 191394 13 2 870 117999 1 Denitrovibrio genus 0 1 0 Denitrovibrio acetiphilus species 869 1 118000 2351 1 476 genus 0 species Flexistipes sinusarabici 0 476 1 2352 545865 1 642 0 genus 1 642 477976 species Calditerrivibrio nitroreducens 0 872 1 53572 genus 0 0 Deferribacter desulfuricans species 1 872 197162 4 1261 68297 phylum 0 4 1261 203486 class 0 4 1261 203487 4 Dictyoglomales order 0 1 1257 3 203488 1 family Dictyoglomaceae 0 1 0 genus 1256 2 13 Dictyoglomus turgidum species 0 1 545 513050 0 Dictyoglomus thermophilum species 1 711 14 clade 0 290 3 2498710 phylum 0 67814 3 290 693071 290 3 class 0 2 693072 3 290 0 1 Caldisericales order 693073 2 288 0 family 288 2 3 693074 0 1 Caldisericum genus 0 species Caldisericum exile 285 1 693075 0 1 name 0 superkingdom 0 269 40790 2157 Euryarchaeota phylum 0 1 28890 2 220 36504 0 1 Archaeoglobi class 8 183980 10 835 0 order 9 827 2231 9 827 2232 0 family 3 162 190818 3 genus Geoglobus 1 0 0 Geoglobus acetivorans species 565033 1 85 1 74 113653 0 Geoglobus ahangari species genus 0 157 1 54260 54261 157 1 Ferroglobus placidus species 0 genus Archaeoglobus 0 1 508 5 2233 1 0 Archaeoglobus sulfaticallidus species 1316941 1 124 Archaeoglobus fulgidus species 0 1 243 2234 0 Archaeoglobus profundus species 84156 1 38 58290 102 1 species Archaeoglobus veneficus 0 clade 0 19 2239 2283796 182 3 1803510 clade 0 genus Aciduliprofundum 0 1 379546 1 182 3 124 1 379547 0 species Aciduliprofundum boonei 57 1 2633939 no rank 0 0 Aciduliprofundum sp. MAR08-339 species 1 57 673860 183967 13 16 2057 Thermoplasmata class 1 0 0 no rank 1 291 1234666 291 1 1495144 0 species methanogenic archaeon ISO4-H5 order 0 5 554 1235850 1577788 384 3 0 family 2 142 1607807 1 genus Candidatus Methanoplasma 0 1 1577791 141 1 species Candidatus Methanoplasma termitum 0 1 242 1080709 0 genus 242 1 1406512 species Candidatus Methanomassiliicoccus intestinalis 0 2517203 170 2 family 0 2 1291539 2 170 1 0 Candidatus Methanomethylophilus genus 1291540 1 168 0 species Candidatus Methanomethylophilus alvus order 0 9 1199 2301 0 no rank 1 317 1919231 species Thermoplasmatales archaeon BRNA1 0 317 1 1054217 0 family 1747776 132 2 132 2 1747777 1 Cuniculiplasma genus 1 0 0 species Cuniculiplasma divulgatum 131 1 1673428 1 0 Thermoplasmataceae family 134 3 4 46659 2302 130 2 0 genus 60 1 2303 0 Thermoplasma acidophilum species 0 Thermoplasma volcanium species 1 70 50339 0 family 46630 1 224 genus 0 46631 224 1 82076 1 224 species Picrophilus torridus 0 0 family 2 392 90142 2 392 74968 genus 0 Ferroplasma acidiphilum species 0 74969 207 1 185 1 97393 species Ferroplasma acidarmanus 0 41 3766 183968 3 Thermococci class 1 0 0 1 Thermococcales order 40 3763 4 2258 2 2259 39 3759 1 0 family Thermococcaceae 2260 1 898 8 genus Pyrococcus 1 0 0 species Pyrococcus horikoshii 1 105 53953 29292 1 90 Pyrococcus abyssi species 0 2 369 2629106 no rank 0 1183377 217 1 Pyrococcus sp. ST04 species 0 0 species Pyrococcus sp. NA2 342949 152 1 1609559 1 81 0 species Pyrococcus kukulkanii 1008460 50 1 species Pyrococcus yayanosii 0 2261 202 1 Pyrococcus furiosus species 0 genus Thermococcus 1 0 2263 26 2750 29 Thermococcus thioreducens species 0 277988 1 108 1 93 71998 0 species Thermococcus pacificus 187880 70 1 species Thermococcus radiotolerans 0 0 no rank 522 6 2627626 1 75 1674923 species Thermococcus sp. 2319x1 0 122420 1 34 species Thermococcus sp. P6 0 0 species Thermococcus sp. 4557 1042877 1 53 2016361 1 124 Thermococcus sp. EXT12c species 0 Thermococcus sp. 5-4 species 0 125 1 2008440 246969 1 111 Thermococcus sp. AM4 species 0 111 1 172049 0 Thermococcus sibiricus species Thermococcus cleftensis species 0 163003 1 84 0 Thermococcus siculi species 72803 1 70 0 Thermococcus barossii species 101 1 54077 68 1 311400 species Thermococcus kodakarensis 0 Thermococcus barophilus species 0 55802 222 1 0 species Thermococcus peptonophilus 1 73 53952 107 1 1505907 0 species Thermococcus eurythermalis 0 Thermococcus celer species 2264 1 68 0 Thermococcus piezophilus species 1 55 1712654 1 115 342948 species Thermococcus onnurineus 0 110164 123 1 species Thermococcus guaymasensis 0 species Thermococcus nautili 0 195522 1 84 119 1 54262 0 Thermococcus chitonophagus species species Thermococcus paralvinellae 0 582419 71 1 species Thermococcus gorgonarius 0 46 1 71997 49899 141 1 0 Thermococcus profundus species species Thermococcus gammatolerans 0 109 1 187878 0 species Thermococcus litoralis 2265 1 164 1 109 83867 0 genus 0 species Palaeococcus pacificus 971279 109 1 2290931 109 19099 clade 0 Methanomicrobia class 1 0 224756 9 10334 48 order Methanosarcinales 0 1 94695 5 7639 28 0 1 Methanosarcinaceae family 7315 23 16 2206 genus 0 101191 1 325 101192 1 325 0 Methanomethylovorans hollandica species genus 0 433 2 2175 0 Methanohalophilus mahii species 203 1 2176 230 1 2177 Methanohalophilus halophilus species 0 1 0 Methanolobus genus 1 2220 299 2 0 Methanolobus psychrophilus species 1 298 420950 0 genus 196136 1 171 0 species Methanosalsum zhilinae 39669 1 171 2 390 2225 genus 0 0 species Methanococcoides methylutens 2226 223 1 0 Methanococcoides burtonii species 1 167 29291 335 1 2321 0 genus 0 species Methanohalobium evestigatum 1 335 2322 2207 7 5346 13 Methanosarcina genus 0 1 0 species Methanosarcina horonobensis 620 1 418008 no rank 0 4 1515 2644672 species Methanosarcina sp. MTP4 0 1434100 1 239 383 1 1434102 0 Methanosarcina sp. WH1 species Methanosarcina sp. Kolksee species 0 508 1 1434099 0 species Methanosarcina sp. WWM596 1434103 385 1 2208 1 976 Methanosarcina barkeri species 0 170861 239 1 0 Methanosarcina lacustris species Methanosarcina vacuolata species 0 2215 429 1 1 202 2210 species Methanosarcina thermophila 0 Methanosarcina mazei species 0 2209 510 1 0 Methanosarcina acetivorans species 2214 576 1 272 1 38027 species Methanosarcina siciliae 0 Methanosaetaceae family 1 0 143067 2 319 4 3 317 2 2222 0 1 genus Methanothrix 301375 1 160 species Methanosaeta harundinacea 0 155 1 2223 Methanothrix soehngenii species 0 0 1 order Methanomicrobiales 9 2191 2225 16 1 246 196137 family 0 1 246 2202 0 genus 0 species Methanospirillum hungatei 2203 246 1 0 1 family Methanoregulaceae 5 1198451 853 6 genus Methanoregula 1 0 395331 4 515 3 0 species Methanoregula formicica 882104 333 1 Methanoregula boonei species 0 358766 178 1 genus Methanosphaerula 0 1 333 2 475087 2 0 species Methanosphaerula palustris 1 331 475088 1 0 Methanomicrobiaceae family 2 2194 6 781 genus 0 230355 1 151 54120 151 1 0 species Methanolacinia petrolearia 10 45989 4 628 0 1 Methanoculleus genus 0 species Methanoculleus marisnigri 1 193 2198 Methanoculleus bourgensis species 0 83986 1 307 1 118 2619537 0 no rank 86622 118 1 species Methanoculleus sp. MAB1 0 2 336 88404 0 family 0 1 genus Methanocorpusculum 336 2 1 2192 83984 335 1 0 Methanocorpusculum labreanum species 6 570264 3 461 1 0 order Methanocellales 455 2 570265 family 0 570266 455 2 genus 0 0 Methanocella arvoryzae species 1 359 1175445 1175444 1 96 Methanocella conradii species 0 Halobacteria class 0 1 183963 44 8765 61 18 2682 1644055 18 order Haloferacales 0 1 6 1644056 1490 8 1 0 Haloferacaceae family 1 0 genus Halogeometricum 2 252 2 60846 Halogeometricum borinquense species 0 1 250 60847 Haloferax genus 1 0 2251 7 1113 4 0 Haloferax mediterranei species 224 1 2252 1 440 2246 0 species Haloferax volcanii Haloferax gibbonsii species 0 35746 442 1 0 genus 293431 1 119 293091 119 1 Haloquadratum walsbyi species 0 1 0 family Halorubraceae 8 973 6 1963271 372 3 56688 15 Halorubrum genus 1 0 1 166 29284 Halorubrum trapanicum species 0 1 191 2247 species Halorubrum lacusprofundi 0 1209988 5 2 264 Halopenitus genus 1 0 0 Halopenitus persicus species 1048396 1 259 1 1644057 2 331 0 1 genus Salinigranum species Salinigranum rubrum 0 755307 330 1 2678336 1 201 no rank 0 1 201 756883 species halophilic archaeon DL31 0 3335 25 2235 52 Halobacteriales order 1 0 15 2285 1963268 12 Haloarculaceae family 1 0 191 2 203135 2 genus Halomicrobium 0 1 Halomicrobium mukohataei species 0 57705 189 1 0 genus 266 1 1073987 no rank 0 1 266 2648975 Halorientalis sp. IM1011 species 0 1 266 1932360 2237 17 5 954 Haloarcula genus 1 0 no rank 0 2624677 275 1 275 1 1592728 species Haloarcula sp. CBA1115 0 1932004 1 134 species Haloarcula taiwanensis 0 2238 226 1 species Haloarcula marismortui 0 0 species Haloarcula hispanica 302 1 51589 367 3 2 63743 0 1 genus Natronomonas Natronomonas pharaonis species 0 2257 1 172 species Natronomonas moolapensis 0 416273 193 1 3 495 146825 1 Halorhabdus genus 1 0 1 211 430914 0 species Halorhabdus tiamatea 146826 1 283 0 species Halorhabdus utahensis 2 2236 998 9 1 0 family Halobacteriaceae genus Halanaeroarchaeum 1 0 90 2 1656823 1 species Halanaeroarchaeum sulfurireducens 0 89 1 1604004 1 109 1980514 0 genus Halodesulfurarchaeum formicicum species 0 1873524 1 109 genus Halobacterium 1 0 2239 5 4 656 1 229 1407499 0 Halobacterium hubeiense species 2242 1 131 0 Halobacterium salinarum species 2668073 291 1 no rank 0 0 Halobacterium sp. DL1 species 291 1 751944 332246 141 1 0 genus species Halalkalicoccus jeotgali 0 413810 141 1 0 1 Natrialbales order 17 2704 16 1644060 2688 16 20 1644061 1 0 family Natrialbaceae 63742 209 1 genus 0 Natrialba magadii species 0 13769 1 209 1269201 194 1 genus 0 2621923 194 1 0 no rank 1333523 1 194 species Salinarchaeum sp. Harcht-Bsk1 0 genus 0 29287 204 1 0 species Natronococcus occultus 204 1 29288 0 1 genus Halostagnicola 2 219 2 353799 0 Halostagnicola larsenii species 1 217 353800 Halobiforma genus 1 0 2 501 203193 1 229731 1 500 Halobiforma lacisalsi species 0 121871 6 379 3 genus Haloterrigena 0 1 62320 1 253 0 species Haloterrigena turkmenica 0 Haloterrigena daqingensis species 1 120 588898 387342 336 1 genus 0 Halopiger xanaduensis species 0 387343 1 336 1 0 Natrinema genus 501 3 5 88723 2622230 1 237 no rank 0 406552 1 237 0 Natrinema sp. J7-2 species 0 species Natrinema pellirubrum 1 259 69525 1 125 2256 0 genus 44930 125 1 0 Natronobacterium gregoryi species 40 10563 2283794 clade 0 Methanobacteria class 1 0 26 5470 183925 2 0 1 Methanobacteriales order 1 2158 5468 25 23 5167 5 2159 0 1 family Methanobacteriaceae 1 2316 2 517 1 0 genus Methanosphaera 0 species Methanosphaera stadtmanae 516 1 2317 Methanobrevibacter genus 1 0 2172 3 7 2790 0 species Methanobrevibacter millerae 1 422 230361 Methanobrevibacter smithii species 0 689 1 2173 0 Methanobrevibacter olleyae species 1 501 294671 no rank 0 2638681 718 2 224719 383 1 Methanobrevibacter sp. AbM4 species 0 0 Methanobrevibacter sp. YE315 species 1609968 1 335 Methanobrevibacter ruminantium species 0 83816 1 457 1580 8 1 2160 1 0 genus Methanobacterium Methanobacterium lacus species 0 877455 318 1 118062 1 216 species Methanobacterium congolense 0 304 1 868131 Methanobacterium paludis species 0 329 2 2627676 no rank 0 180 1 1911685 0 Methanobacterium sp. MZ-A1 species 149 1 1379702 0 Methanobacterium sp. MB1 species 0 Methanobacterium formicicum species 262 1 2162 0 species Methanobacterium subterraneum 59277 150 1 145260 2 275 5 Methanothermobacter genus 1 0 Methanothermobacter marburgensis species 0 145263 53 1 Methanothermobacter wolfeii species 0 1 74 145261 2631116 1 80 0 no rank 866790 1 80 0 species Methanothermobacter sp. CaT2 1 66 145262 0 species Methanothermobacter thermautotrophicus family 0 300 1 2178 0 genus 2179 1 300 2180 300 1 0 species Methanothermus fervidus 14 5093 2 183939 0 1 class Methanococci Methanococcales order 0 1 2182 4 5091 13 196117 7 1990 family 0 196118 1814 6 0 genus 0 Methanocaldococcus vulcanius species 1 243 73913 species Methanocaldococcus fervens 0 83171 1 267 0 species Methanocaldococcus jannaschii 1 409 2190 396 1 1301915 Methanocaldococcus bathoardescens species 0 165 1 67760 0 species Methanocaldococcus infernus no rank 0 1 334 2641196 0 species Methanocaldococcus sp. FS406-22 334 1 644281 genus 0 196119 176 1 2189 1 176 0 Methanotorris igneus species 2183 5 3097 0 family 2184 2744 4 0 genus 1 190 2188 0 Methanococcus voltae species 0 Methanococcus vannielii species 1 386 2187 1 1621 39152 0 species Methanococcus maripaludis species Methanococcus aeolicus 0 547 1 42879 0 genus 155862 353 1 species Methanothermococcus okinawensis 0 353 1 155863 0 clade 84 1 1783276 0 phylum 1801631 84 1 1 84 2490204 genus 0 species Candidatus Micrarchaeota archaeon Mia14 0 1920749 1 84 0 clade 1783275 4202 48 phylum 0 9 1228 651137 0 1 Nitrosopumilales order 4 31932 538 4 338190 3 534 0 family 0 genus 338191 2 395 214 1 1580092 0 species Candidatus Nitrosopumilus adriaticus 0 species Candidatus Nitrosopumilus sediminis 1229909 1 181 1 139 1993653 genus 0 Candidatus Nitrosomarinus catalina species 0 139 1 1898749 0 no rank 651142 496 3 0 genus 1825023 279 2 0 species Candidatus Nitrosotenuis cloacae 1 141 1603555 138 1 1846278 Candidatus Nitrosotenuis sp. AQ6f species 0 217 1 1593364 0 genus 0 Candidatus Nitrosopelagicus brevis species 1 217 1410606 0 class 194 2 1643678 0 order 40 1 1968909 40 1 1968910 0 family genus 0 498374 40 1 2045011 40 1 0 Candidatus Nitrosocaldus islandicus species 154 1 1033996 0 order 1033997 154 1 family 0 154 1 497726 genus 0 1034015 154 1 Nitrososphaera viennensis species 0 0 phylum 51967 1 36 0 genus 498845 36 1 498846 1 36 Candidatus Korarchaeum cryptofilum species 0 38 2938 28889 0 phylum 0 1 Thermoprotei class 6 183924 2938 38 114380 5 474 13 order Desulfurococcales 0 1 303 9 2272 2 family Desulfurococcaceae 1 0 477695 1 42 genus 0 1200300 42 1 species Thermogladius calderae 0 genus 0 2 46 2273 Desulfurococcus mucosus species 0 2275 1 12 0 species Desulfurococcus amylolyticus 1 34 94694 54258 40 2 0 genus 54259 9 1 0 species Ignicoccus islandicus 0 Ignicoccus hospitalis species 160233 1 31 0 genus 54253 1 33 species Thermosphaera aggregans 0 33 1 54254 0 genus 2279 2 140 68 1 84599 species Staphylothermus hellenicus 0 2280 72 1 0 species Staphylothermus marinus 3 166 2307 0 family 54251 1 58 0 genus 0 Pyrolobus fumarii species 54252 1 58 0 genus 2308 1 56 56 1 1273541 0 Pyrodictium delaneyi species 0 genus 54247 52 1 54248 52 1 0 Hyperthermus butylicus species 0 order 871006 3 245 family 0 1 220 255472 220 1 200414 genus 0 species Caldisphaera lagunensis 0 200415 220 1 0 family 871007 2 25 0 1 Acidilobus genus 1 105850 2 25 0 species Acidilobus saccharovorans 242703 1 24 2266 1 540 12 order Thermoproteales 1 0 336 7 2267 family 0 3 138 164450 1 genus Vulcanisaeta 1 0 164451 87 1 0 species Vulcanisaeta distributa 0 species Vulcanisaeta moutnovskia 985052 50 1 55 1 76886 0 genus 0 species Caldivirga maquilingensis 55 1 76887 62 1 2276 0 genus 0 species Pyrobaculum islandicum 62 1 2277 81 2 2270 0 genus 1 26 2271 0 species Thermoproteus tenax 184117 55 1 species Thermoproteus uzoniensis 0 4 203 114378 0 family 0 genus 4 203 2268 2269 1 54 0 species Thermofilum pendens 1 43 1365176 0 species Thermofilum adornatus 1550241 70 1 0 species Thermofilum uzonense Thermofilum carboxyditrophus species 0 1 36 1483572 order 0 2281 9 1673 9 1673 118883 family 0 1 194 12914 0 genus species Acidianus hospitalis 0 1 194 563177 genus 0 2 99 41980 Metallosphaera cuprina species 0 1006005 1 34 43687 1 65 0 species Metallosphaera sedula 1 0 Sulfolobus genus 1 2284 4 836 2641160 209 1 no rank 0 1891280 1 209 0 species Sulfolobus sp. A20 0 Sulfolobus islandicus species 43080 354 1 species Sulfolobus acidocaldarius 0 2285 1 272 genus 0 69655 1 359 species Sulfolobus tokodaii 0 111955 359 1 2100760 185 1 genus 0 Sulfolobus solfataricus species 0 2287 1 185