PHA4GE: wastewater surveillance; version 1.0
Use for wastewater samples collected for pathogen genomic surveillance or detection, developed by the Public Health Alliance for Genomic Epidemiology (PHA4GE). Package attributes include fields for sample collection context, environmental source, sequencing metadata, and other attributes relevant to public health and wastewater monitoring. PHA4GE has also created a customized version of this package that includes additional standardized fields, more specific guidance, controlled vocabulary picklists, and sub-packages available at: https://github.com/pha4ge/Wastewater_Contextual_Data_Specification.