##INPUT PARAMETERS##
#Reference file:	[/databases/RQCFilterData/short.fa.gz, /databases/RQCFilterData/short.fa.gz]
#Query file:	/global/cfs/cdirs/m3408/aim2/rqc_filter/cromwell-executions/main_workflow/bc91ebfa-ff9e-44c2-8335-ee5a0033a54f/call-jgi_rqcfilter1/readsQC1.jgi_rqcfilter/2c5634cd-0487-464e-907a-52a49a4d7142/call-rqcfilter/shard-0/tmp.09640239/TEMP_FILTER1_1e25e04179127f25c23acefbcb69_11809.5.220651.CTCTCTA-TTATGCG.anqdpht.fastq.gz
#Not matched reads file:	/global/cfs/cdirs/m3408/aim2/rqc_filter/cromwell-executions/main_workflow/bc91ebfa-ff9e-44c2-8335-ee5a0033a54f/call-jgi_rqcfilter1/readsQC1.jgi_rqcfilter/2c5634cd-0487-464e-907a-52a49a4d7142/call-rqcfilter/shard-0/tmp.09640239/TEMP_FILTER2_1e25e04179127f25c23acefbcb69_11809.5.220651.CTCTCTA-TTATGCG.anqdpht.fastq.gz
#Matched reads file:	filtered/synth2.fq.gz
#Output file (duk):	filtered/kmerStats2.txt
#Output file (stats):	filtered/scaffoldStats2.txt
#Mer size:	20
#Avg step size:	0.0
#Cut off:	0
#Mask middle:	true
#Quality trim:	false

##REFERENCE STAT##
#Total Reads:	14
#Total Bases:	312
#Total kmers:	46
#Total stored kmers:	986

## ELAPSED TIME##
# Time:	1.75 seconds

##QUERY FILE STAT##
# Total number of reads:	1120654
# Total number of matched reads:	6
# Match ratio:	0.000005

##P-VALUE##
#Avg number of Kmer for each read:	129

## Histogram of kmer occurance for reads with at least one occurance ##
#NumOcc	NumReads	Percentage
0	1120651	99.9997
2	2	0.0002
3	1	0.0001

