name	taxID	taxRank	genomeSize	numReads	numUniqueReads	abundance
Gemmata obscuriglobus	114	species	17998094	5	0	0.0
Treponema pallidum subsp. pallidum	161	subspecies	1139838	1	0	0.0
Helicobacter mustelae	217	species	1578097	1	0	0.0
Elizabethkingia meningoseptica	238	species	15625789	1	0	0.0
Ralstonia solanacearum	305	species	5757294	2	1	0.0
Pseudomonas stutzeri	316	species	4548207	2	0	0.0
Azotobacter chroococcum	353	species	5192286	1	0	0.0
Sinorhizobium fredii	380	species	6924988	1	0	0.0
Acinetobacter baumannii	470	species	4233127	1	0	0.0
Acinetobacter calcoaceticus	471	species	8050108	1	1	0.0
Neisseria elongata	495	species	2253031	1	0	0.0
Citrobacter koseri	545	species	4735357	13	1	0.0
Klebsiella aerogenes	548	species	5435727	11	0	0.0
Escherichia coli	562	species	8460827	3230	1472	0.234165
Klebsiella oxytoca	571	species	6684898	4	1	0.0
Klebsiella pneumoniae	573	species	14826006	5	0	0.0
Providencia rettgeri	587	species	36637538	1	1	0.0
Shigella boydii	621	species	4760589	15	8	0.0
Shigella dysenteriae	622	species	4520554	15	2	0.0
Shigella flexneri	623	species	7250520	5	1	0.0
Shigella sonnei	624	species	5137894	10	5	0.0
Aeromonas caviae	648	species	27968422	4	3	0.0
Vibrio cholerae	666	species	5444833	7	0	0.0
Vibrio vulnificus	672	species	5071151	1	1	0.0
Orientia tsutsugamushi	784	species	2200350	1	0	0.0
Bacteroides fragilis	817	species	5308603	2880	2504	0.00921436
Bacteroides thetaiotaomicron	818	species	6293399	5	2	0.0
Bacteroides uniformis	820	species	4989532	5	5	0.0
Bacteroides vulgatus	821	species	5163189	13	10	0.0
Parabacteroides distasonis	823	species	10023638	4	4	0.0
Porphyromonas gingivalis	837	species	2736420	6	6	0.0
Fusobacterium nucleatum	851	species	3161193	1	0	0.0
Faecalibacterium prausnitzii	853	species	3102523	2997	2253	0.0
Fusobacterium necrophorum	859	species	4694448	1	1	0.0
Fusobacterium periodonticum	860	species	2541084	1	1	0.0
Fusobacterium ulcerans	861	species	3839419	2	0	0.0
Herbaspirillum seropedicae	964	species	5513887	3	0	0.0
Cellulophaga lytica	979	species	3765936	1	0	0.0
Weeksella virosa	1014	species	2272954	1	0	0.0
Capnocytophaga gingivalis	1017	species	2838633	1	0	0.0
Chlorobium phaeovibrioides	1094	species	1966858	1	0	0.0
Leuconostoc mesenteroides	1245	species	3310663	3	2	0.0
Kocuria rosea	1275	species	11520941	5	0	0.0
Staphylococcus warneri	1292	species	12763842	1	0	0.0
Streptococcus salivarius	1304	species	2213879	1	0	0.0
Streptococcus pneumoniae	1313	species	2114821	1	0	0.0
Streptococcus dysgalactiae	1334	species	4983431	2	0	0.0
Streptococcus equinus	1335	species	11728033	1	1	0.0
Enterococcus faecium	1352	species	2969925	10	2	0.0
Enterococcus gallinarum	1353	species	7096408	1	0	0.0
Bacillus	1386	genus	6141499	2	1	0.0
Bacillus coagulans	1398	species	3312652	1	1	0.0
Bacillus licheniformis	1402	species	8445242	1	1	0.0
Bacillus mycoides	1405	species	5872743	1	1	0.0
Bacillus pumilus	1408	species	3704641	1	1	0.0
Lysinibacillus sphaericus	1421	species	4817463	1	1	0.0
Bacillus atrophaeus	1452	species	4168266	1	0	0.0
Bacillus lentus	1467	species	4384366	1	0	0.0
Clostridium botulinum	1491	species	4204997	5	2	0.0
Clostridioides difficile	1496	species	5221519	570	467	0.00312268
Paeniclostridium sordellii	1505	species	3584812	2	2	0.0
Clostridium sporogenes	1509	species	8284974	2	0	0.0
Clostridium tetani	1513	species	2869591	1	1	0.0
Clostridium scatologenes	1548	species	5749410	1	1	0.0
Lactobacillus helveticus	1587	species	2095920	2	1	0.0
Lactobacillus plantarum	1590	species	5152316	2	1	0.0
Lactobacillus gasseri	1596	species	1922956	1	0	0.0
Lactobacillus paracasei	1597	species	3589835	1	1	0.0
Lactobacillus acetotolerans	1600	species	5066279	1	1	0.0
Lactobacillus agilis	1601	species	2205859	2	1	0.0
Lactobacillus fermentum	1613	species	2148561	226	129	0.00758886
Bifidobacterium adolescentis	1680	species	2089645	4	1	8.55091e-17
Bifidobacterium bifidum	1681	species	2209060	15	0	0.0
Corynebacterium diphtheriae	1717	species	2464936	1	0	0.0
Mycobacterium	1763	genus	7259758	1	0	0.0
Mycobacterium tuberculosis	1773	species	5853101	1	0	0.0
Streptomyces ambofaciens	1889	species	8393598	1	0	0.0
Streptomyces globisporus	1908	species	7783599	4	0	0.0
Homo sapiens	9606	species	3272089205	96	59	0.0
Bifidobacterium pseudocatenulatum	28026	species	2313752	1	0	0.0
Bacteroides heparinolyticus	28113	species	3608975	5	4	0.0
Bacteroides ovatus	28116	species	6475296	13	11	0.0
Bacteroides zoogleoformans	28119	species	3361794	17	17	0.0
Prevotella denticola	28129	species	2937589	66	17	0.0
Prevotella intermedia	28131	species	2686803	686	387	0.0
Prevotella melaninogenica	28132	species	3168282	150	42	0.0
Prevotella oris	28135	species	3168212	29	20	0.0
Serratia proteamaculans	28151	species	5495657	1	0	0.0
Neisseria subflava	28449	species	4517530	7	7	0.0
Streptomyces nitrosporeus	28894	species	7581562	4	0	0.0
Salmonella enterica	28901	species	11644785	1	0	0.0
Staphylococcus cohnii	29382	species	7987830	1	1	0.0
Veillonella parvula	29466	species	2132142	518	414	0.0
Mycoplasma canadense	29554	species	693241	1	0	0.0
Bifidobacteriaceae	31953	family	2593741	1	0	0.0
Veillonellaceae	31977	family	2371811	1	0	0.0
Parvimonas micra	33033	species	4966270	1	0	0.0
Blautia producta	33035	species	6197116	3	2	0.0
Zymobacter palmae	33074	species	3028543	2	0	0.0
Lactobacillus johnsonii	33959	species	1907846	6	0	0.0
Paracoccus aminophilus	34003	species	4873118	1	0	0.0
Helicobacter pullorum	35818	species	1733410	3	3	0.0
Streptomyces subrutilus	36818	species	7604974	4	0	0.0
Shewanella algae	38313	species	20016680	2	0	0.0
Anaerobutyricum hallii	39488	species	3515670	9	8	0.0
Veillonella atypica	39777	species	2071952	329	328	0.0
Veillonella dispar	39778	species	2116915	2320	2320	0.0
Streptomyces nodosus	40318	species	7772587	1	0	0.0
Thioploca ingrica	40754	species	4810005	2	1	0.0
Acidianus brierleyi	41673	species	2947156	1	1	0.0
Rubrobacter radiotolerans	42256	species	3267233	1	1	0.0
Shigella flexneri 2a	42897	leaf	14875664	1	0	0.0
Vibrio scophthalmi	45658	species	9728927	1	0	0.0
Bacteroides caccae	47678	species	4570803	6	6	0.0
Acinetobacter pittii	48296	species	3862530	1	0	0.0
Flavobacteriaceae	49546	family	3488032	4	4	0.0
Brevibacillus formosus	54913	species	6437015	2	1	0.0
Salmonella enterica subsp. enterica	59201	subspecies	179025726	1	0	0.0
Fibrobacter succinogenes subsp. succinogenes S85	59374	leaf	7685639	2	0	0.0
Enterobacter asburiae	61645	species	4561905	1	1	0.0
Zobellia galactanivorans	63186	species	5521712	2	2	0.0
Acetobacter pomorum	65959	species	6161139	1	1	0.0
Kocuria rhizophila	72000	species	2697540	1	0	0.0
Klebsiella pneumoniae subsp. pneumoniae	72407	subspecies	236689933	2	0	0.0
Collinsella aerofaciens	74426	species	9209673	16	14	0.0
Prevotella enoeca	76123	species	2861432	58	55	0.0
Pseudomonas veronii	76761	species	14157931	1	0	0.0
Fusobacterium nucleatum subsp. nucleatum	76856	subspecies	4413111	5	5	0.0
Fusobacterium nucleatum subsp. polymorphum	76857	subspecies	7598824	4	4	0.0
Fusobacterium nucleatum subsp. animalis	76859	subspecies	4860157	483	483	0.0
Cupriavidus pauculus	82633	species	13241952	4	4	0.0
Escherichia coli K-12	83333	leaf	69860331	28	5	0.0
Escherichia coli O157:H7	83334	leaf	128115015	2	0	0.0
Leclercia adecarboxylata	83655	species	50513994	2	0	0.0
Eggerthella lenta	84112	species	3632260	2	2	0.0
Pseudarthrobacter chlorophenolicus	85085	species	4980870	1	0	0.0
Aerococcus christensenii	87541	species	1634920	5	5	0.0
Neisseria elongata subsp. glycolytica	88719	subspecies	2249415	27	0	0.0
Wolbachia endosymbiont of Onchocerca ochengi	100901	species	957990	1	0	0.0
Tenacibaculum maritimum	107401	species	3435971	1	0	0.0
Leptotrichia trevisanii	109328	species	8459945	4	0	0.0
Salmonella enterica subsp. enterica serovar Choleraesuis	119912	leaf	4751585	5	2	0.0
Stenotrophomonas acidaminiphila	128780	species	7799161	2	2	0.0
Serratia quinivorans	137545	species	10669693	4	0	0.0
Fusobacterium nucleatum subsp. vincentii	155615	subspecies	2087706	8	8	0.0
Cedecea neteri	158822	species	19970488	2	2	0.0
Enterobacter hormaechei	158836	species	14383200	1	1	0.0
Megamonas hypermegale	158847	species	2230342	1	1	0.0
Collimonas fungivorans	158899	species	5186898	1	0	0.0
Rothia aeria	172042	species	2588680	2	2	0.0
Helicobacter cetorum MIT 00-7128	182217	leaf	1960111	1	1	0.0
Clostridium isatidis	182773	species	2869927	1	0	0.0
Pseudobutyrivibrio xylanivorans	185007	species	3584491	1	0	0.0
Clostridiales	186802	order	4215646	1	0	0.0
Methylocystis sp. SC2	187303	species	3773444	1	1	0.0
Chlorobaculum tepidum TLS	194439	leaf	2154946	1	1	0.0
Sinorhizobium americanum	194963	species	6853050	1	0	0.0
Streptococcus pasteurianus	197614	species	2100077	4	0	0.0
Pseudomonas trivialis	200450	species	6452803	1	1	0.0
Tannerella forsythia 92A2	203275	leaf	3405521	1	0	0.0
Amycolatopsis japonica	208439	species	9053857	1	1	0.0
[Clostridium] bolteae	208479	species	6614036	10	2	0.0
Staphylococcus nepalensis	214473	species	8891204	1	0	0.0
Escherichia coli 042	216592	leaf	10145183	1	0	0.0
Bacteroides thetaiotaomicron VPI-5482	226186	leaf	6293399	4	3	0.0
Akkermansia muciniphila	239935	species	2664102	807	243	0.0306015
Treponema pallidum subsp. pallidum str. Nichols	243276	leaf	1138011	1	0	0.0
Klebsiella variicola	244366	species	5458505	1	0	0.0
Prevotella intermedia 17	246198	leaf	2699437	21	0	0.0
Bacteroides cellulosilyticus	246787	species	7084828	11	10	0.0
Veillonella rodentium	248315	species	2041290	32	32	0.0
Lactobacillus johnsonii NCC 533	257314	leaf	1992676	2	0	0.0
Yersinia aleksiciae	263819	species	4000307	1	0	0.0
Prevotella ruminicola 23	264731	leaf	3619559	5	3	0.0
Rubrobacter xylanophilus DSM 9941	266117	leaf	3225748	5	0	0.0
Bacteroides fragilis NCTC 9343	272559	leaf	5241700	253	3	0.0
Clostridioides difficile 630	272563	leaf	8572915	2	0	0.0
Mycoplasma penetrans HF-2	272633	leaf	1358633	1	1	0.0
Brevibacterium aurantiacum	273384	species	25280067	1	0	0.0
Streptomyces ambofaciens ATCC 23877	278992	leaf	8393598	1	0	0.0
Arthrobacter sp. FB24	290399	species	5070478	4	4	0.0
Flavonifractor plautii	292800	species	7803870	26	26	0.0
Bacteroides fragilis YCH46	295405	leaf	5310990	427	417	0.0
Desulfovibrio carbinolicus	296842	species	4688868	5	1	0.0
Shigella dysenteriae Sd197	300267	leaf	4560911	1	0	0.0
Roseburia hominis	301301	species	3592125	992	0	0.00453913
Agrobacterium radiobacter K84	311403	leaf	7273300	3	3	0.0
Robiginitalea biformata HTCC2501	313596	leaf	3530383	2	1	0.0
Streptococcus gallolyticus	315405	species	2395815	1	1	0.0
Rhodopseudomonas palustris BisA53	316055	leaf	5505494	3	3	0.0
Geobacter daltonii FRC-32	316067	leaf	4304501	8	8	0.0
Escherichia coli ETEC H10407	316401	leaf	5325888	2	0	0.0
Deinococcus ficus	317577	species	4157290	1	0	0.0
Nostoc sp. PCC 7107	317936	species	6329823	1	1	0.0
Nonlabens sediminis	319236	species	2835711	1	1	0.0
Azotobacter vinelandii DJ	322710	leaf	5365318	1	0	0.0
Chloroflexus aggregans DSM 9485	326427	leaf	4684931	1	0	0.0
Bacteroides intestinalis	329854	species	5785761	10	9	0.0
Escherichia coli HS	331112	leaf	4643538	9	4	0.0
Aquitalea magnusonii	332411	species	4852135	2	0	0.0
Orientia tsutsugamushi str. Ikeda	334380	leaf	2008987	1	0	0.0
Lactobacillus fermentum IFO 3956	334390	leaf	2098685	15	14	0.0
Escherichia coli B7A	340184	leaf	5230440	1	1	0.0
Shigella boydii CDC 3083-94	344609	leaf	4874659	1	0	0.0
Akkermansia muciniphila ATCC BAA-835	349741	leaf	2664102	4	0	0.0
Alkaliphilus oremlandii OhILAs	350688	leaf	3123558	2	2	0.0
Caldicellulosiruptor saccharolyticus DSM 8903	351627	leaf	2970275	2	2	0.0
Bacteroides dorei	357276	species	5310365	9	7	0.0
Ramlibacter tataouinensis TTB310	365046	leaf	4070193	1	1	0.0
Bifidobacterium adolescentis ATCC 15703	367928	leaf	2089645	394	393	0.444761
Streptococcus pyogenes MGAS2096	370553	leaf	1860355	1	0	0.0
Bacteroides xylanisolvens	371601	species	6547285	7	7	0.0
Rivularia sp. PCC 7116	373994	species	8728773	1	1	0.0
Labrys neptuniae	376174	species	7551292	1	1	0.0
Roseiflexus castenholzii DSM 13941	383372	leaf	5723298	1	0	0.0
Moraxella bovoculi	386891	species	15823829	2	0	0.0
Porphyromonas crevioricanis	393921	species	2133352	2	2	0.0
Methylocella silvestris BL2	395965	leaf	4305430	1	1	0.0
Staphylococcus carnosus subsp. carnosus TM300	396513	leaf	2566424	1	1	0.0
Mucilaginibacter ginsenosidivorans	398053	species	5352833	2	2	0.0
Delftia acidovorans SPH-1	398578	leaf	6767514	1	0	0.0
Serratia proteamaculans 568	399741	leaf	5495657	3	0	0.0
Enterobacter sp. 638	399742	species	4676461	3	2	0.0
Streptococcus merionis	400065	species	2384128	2	0	0.0
Streptomyces xiamenensis	408015	species	5961402	2	2	0.0
[Clostridium] scindens ATCC 35704	411468	leaf	3658040	1	0	0.0
[Ruminococcus] gnavus ATCC 29149	411470	leaf	7101830	8	0	0.0
Faecalibacterium prausnitzii A2-165	411483	leaf	3102523	1277	1271	0.0
Methanobrevibacter smithii ATCC 35061	420247	leaf	1853160	10	10	0.0
Shigella flexneri Y	424720	leaf	9546818	1	0	0.0
Aminipila butyrica	433296	species	3334849	1	0	0.0
Bacteroides vulgatus ATCC 8482	435590	leaf	5163189	4	4	0.0
Parabacteroides distasonis ATCC 8503	435591	leaf	10023638	10	6	0.0
Escherichia coli SMS-3-5	439855	leaf	5215377	1	0	0.0
Xylanimonas cellulosilytica DSM 15894	446471	leaf	3831380	3	0	0.0
Glaesserella parasuis 29755	456298	leaf	2352603	2	2	0.0
Fusobacterium nucleatum subsp. animalis 7_1	457405	leaf	2514029	208	208	0.0
Lactobacillus hordei	468911	species	2590411	2	1	0.0
Fusobacterium nucleatum subsp. vincentii 3_1_27	469602	leaf	2190228	6	6	0.0
Fusobacterium nucleatum subsp. vincentii 3_1_36A2	469604	leaf	2268272	1	0	0.0
Fusobacterium nucleatum subsp. animalis 4_8	469607	leaf	2275461	328	328	0.0
Fusobacterium ulcerans ATCC 49185	469617	leaf	3839419	3	1	0.0
Fusobacterium varium ATCC 27725	469618	leaf	3346458	1	1	0.0
Streptomyces cyaneogriseus subsp. noncyanogenus	477245	subspecies	7762396	1	1	0.0
Kribbella flavida DSM 17836	479435	leaf	7579488	1	1	0.0
Veillonella parvula DSM 2008	479436	leaf	2132142	103	0	0.0
Escherichia coli ATCC 8739	481805	leaf	9493136	1253	37	0.0515576
Bifidobacterium bifidum BGN4	484020	leaf	2223664	5	0	0.0
Chitinophaga pinensis DSM 2588	485918	leaf	9127347	2	1	0.0
Streptococcus pneumoniae 70585	488221	leaf	2184682	1	0	0.0
Arachidicoccus ginsenosidivorans	496057	species	5773153	1	1	0.0
Escherichia coli C	498388	leaf	4617024	4	0	0.0
Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456	500634	leaf	2211039	5	0	0.0
Escherichia coli str. K-12 substr. MG1655	511145	leaf	32520567	5	3	0.0
Actinoplanes missouriensis 431	512565	leaf	8773466	4	0	0.0
[Eubacterium] rectale ATCC 33656	515619	leaf	3449685	1	0	0.0
[Eubacterium] eligens ATCC 27750	515620	leaf	2831389	19	19	0.0
Clostridium botulinum Ba4 str. 657	515621	leaf	4257769	1	0	0.0
Fusobacterium nucleatum subsp. nucleatum ATCC 23726	525283	leaf	2299539	2	2	0.0
Escherichia coli DH1	536056	leaf	9252137	20	0	0.0
Roseburia intestinalis L1-82	536231	leaf	4493348	43	43	0.0
Treponema paraluiscuniculi Cuniculi A	545776	leaf	1133390	1	0	0.0
Neisseria elongata subsp. glycolytica ATCC 29315	546263	leaf	2256647	27	0	0.0
Filifactor alocis ATCC 35896	546269	leaf	1931012	1	1	0.0
Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505	547043	leaf	2313752	1	0	0.0
Prevotella melaninogenica ATCC 25845	553174	leaf	3168282	93	0	0.0
Escherichia coli W	566546	leaf	10014211	371	7	6.37735e-20
Acidaminococcus intestini RyC-MR95	568816	leaf	2487765	1	1	0.0
Ilyobacter polytropus DSM 2926	572544	leaf	3132314	3	3	0.0
Prevotella sp. oral taxon 299 str. F0039	575614	leaf	2480269	43	40	0.0
Escherichia coli S88	585035	leaf	5166121	5	0	0.0
Escherichia coli 55989	585055	leaf	5154862	1	1	0.0
Roseburia hominis A2-183	585394	leaf	3592125	990	0	0.00453913
Desulfurivibrio alkaliphilus AHT 2	589865	leaf	3097763	2	0	0.0
Acidaminococcus fermentans DSM 20731	591001	leaf	2329769	7	7	0.0
Shigella flexneri 2002017	591020	leaf	4894492	1	1	0.0
Escherichia coli KO11FL	595495	leaf	10056495	381	18	3.09103e-22
Methylosinus trichosporium OB3b	595536	leaf	5183433	1	0	0.0
[Clostridium] saccharolyticum WM1	610130	leaf	4662871	1	1	0.0
Christensenella minuta	626937	species	2969292	4	0	0.0
Vagococcus penaei	633807	species	2365304	3	0	0.0
Neisseria zalophi	640030	species	2423693	1	1	0.0
Clostridioides difficile CD196	645462	leaf	4110554	6	6	0.0
Anaerostipes hadrus	649756	species	6345226	2	0	0.0
Azospirillum sp. TSH100	652764	species	7166382	1	1	0.0
Kushneria sp. YCWA18	657387	species	3624619	1	0	0.0
Bacteroides salanitronis DSM 18170	667015	leaf	4308663	13	11	0.0
Helicobacter mustelae 12198	679897	leaf	1578097	1	0	0.0
Alistipes finegoldii DSM 17242	679935	leaf	3734239	11	9	0.0
Escherichia coli UMNK88	696406	leaf	5666764	3	1	0.0
Mahella australiensis 50-1 BON	697281	leaf	3135972	3	1	0.0
Bifidobacterium bifidum PRL2010	702459	leaf	2214656	5	0	0.0
Selenomonas sp. oral taxon 478	712538	species	2284135	7	1	0.0
Lactobacillus fermentum CECT 5716	712938	leaf	2100449	21	17	0.0
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240	718274	leaf	5069994	5	0	0.0
Escherichia coli 1303	745156	leaf	5156928	3	0	0.0
Halobacteroides halobius DSM 5150	748449	leaf	2649255	1	1	0.0
Mesorhizobium australicum WSM2073	754035	leaf	6200534	1	1	0.0
Winogradskyella sp. PG-2	754409	species	3811479	2	2	0.0
Fluviicola taffensis DSM 16823	755732	leaf	4633577	2	1	0.0
Herbaspirillum seropedicae SmR1	757424	leaf	5513887	1	0	0.0
Paraprevotella xylaniphila YIT 11841	762982	leaf	4125322	2	2	0.0
Marichromatium purpuratum 984	765910	leaf	3779112	3	0	0.0
Prevotella denticola F0289	767031	leaf	2937589	53	4	0.0
Lactobacillus fermentum F-6	767453	leaf	2064620	8	8	0.0
Lactobacillus helveticus H10	767462	leaf	2172383	1	0	0.0
Serratia sp. AS12	768490	species	5443009	1	0	0.0
Serratia plymuthica AS9	768492	leaf	5442880	1	0	0.0
Serratia sp. AS13	768493	species	5442549	1	0	0.0
Hydrogenophaga sp. PBC	795665	species	5232477	4	4	0.0
Halostagnicola larsenii XH-48	797299	leaf	4131176	1	0	0.0
Mucilaginibacter ginsenosidivorax	862126	species	7811413	2	2	0.0
Streptomyces sp. SirexAA-E	862751	species	7414440	1	0	0.0
Bacteroides fragilis 638R	862962	leaf	5373121	495	478	0.0
Weeksella virosa DSM 16922	865938	leaf	2272954	2	0	0.0
Escherichia coli 'BL21-Gold(DE3)pLysS AG'	866768	leaf	4570938	3	1	0.0
Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	866789	leaf	5034834	5	3	0.0
Cellulophaga lytica DSM 7489	867900	leaf	3765936	1	0	0.0
Chryseobacterium sp. StRB126	878220	species	5503743	1	0	0.0
Porphyromonas asaccharolytica DSM 20707	879243	leaf	2186370	5	5	0.0
Barnesiella viscericola DSM 18177	880074	leaf	3076856	2	0	0.0
Bifidobacterium bifidum S17	883062	leaf	2186882	5	0	0.0
Streptococcus cristatus ATCC 51100	889201	leaf	2000351	1	0	0.0
Prevotella dentalis DSM 3688	908937	leaf	3350206	28	23	0.0
Lactobacillus johnsonii DPC 6026	909954	leaf	1966342	2	0	0.0
Escherichia coli P12b	910348	leaf	4935294	17	9	0.0
Halioglobus japonicus	930805	species	4116357	2	0	0.0
Acetobacterium woodii DSM 1030	931626	leaf	4044777	2	1	0.0
Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708	938142	leaf	4801679	3	0	0.0
Escherichia coli VR50	941323	leaf	5196066	8	3	0.0
Streptococcus pasteurianus ATCC 43144	981540	leaf	2100077	2	0	0.0
Bacteroides dorei CL03T12C01	997877	leaf	5310365	2	0	0.0
Bacillus megaterium WSH-002	1006007	leaf	5075293	2	0	0.0
Escherichia coli O104:H4	1038927	leaf	16386596	15	0	0.0
Methanocella conradii HZ254	1041930	leaf	2378438	1	1	0.0
Escherichia coli O157	1045010	leaf	45603340	1	1	0.0
Escherichia coli O43 str. RM10042	1055541	leaf	5261709	1	1	0.0
Escherichia coli O121 str. RM8352	1055543	leaf	5474275	2	0	0.0
Microbacterium lemovicicum	1072463	species	3555647	1	1	0.0
Treponema pallidum subsp. pallidum str. Sea 81-4	1095955	leaf	1139203	1	0	0.0
Streptococcus macedonicus ACA-DC 198	1116231	leaf	2142762	1	1	0.0
Elizabethkingia anophelis	1117645	species	4115229	5	0	0.0
Rhizobium grahamii	1120045	species	5889319	1	1	0.0
Blautia producta ATCC 27340 = DSM 2950	1121114	leaf	6197116	7	3	0.0
Clostridioides difficile ATCC 9689 = DSM 1296	1121308	leaf	4154879	4	1	0.0
Corynebacterium callunae DSM 20147	1121353	leaf	2928683	2	2	0.0
Prevotella intermedia ATCC 25611 = DSM 20706	1122984	leaf	2674170	37	16	0.0
Pseudothermotoga hypogea DSM 11164 = NBRC 106472	1123384	leaf	4330581	3	2	0.0
Bacillus megaterium NCT-2	1138452	leaf	5883957	2	0	0.0
Alteromonas stellipolaris LMG 21856	1160720	leaf	4686200	1	1	0.0
Ruminococcus bicirculans	1160721	species	2968500	1	1	0.0
Enterobacter sp. R4-368	1166130	species	5155034	1	1	0.0
Streptomyces globisporus C-1027	1172567	leaf	7783599	1	0	0.0
Prevotella jejuni	1177574	species	3913006	205	160	0.0
Pelosinus fermentans JBW45	1192197	leaf	5380816	1	1	0.0
Bacillus mesonae	1193713	species	5839313	1	0	0.0
Pseudomonas stutzeri CCUG 29243	1196835	leaf	4709064	5	0	0.0
Bradyrhizobium sp. 6(2017)	1197460	species	10014235	1	1	0.0
Escherichia coli NCCP15648	1200752	leaf	5588834	3	0	0.0
Moritella marina ATCC 15381	1202962	leaf	4760425	1	1	0.0
Kordia antarctica	1218801	species	5500985	1	0	0.0
Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	1219067	leaf	10343839	6	3	0.0
Prevotella fusca JCM 17724	1236517	leaf	3261806	123	101	0.0
Nitrosospira briensis C-128	1266925	leaf	3210113	3	1	0.0
Fabibacter pacificus	1267423	species	4661901	2	2	0.0
Pyrodictium delaneyi	1273541	species	2023836	1	0	0.0
Azotobacter vinelandii CA	1283330	leaf	5366370	1	0	0.0
Azotobacter vinelandii CA6	1283331	leaf	5323210	1	0	0.0
Brachyspira hampsonii	1287055	species	3189639	1	0	0.0
Rhodococcus erythropolis R138	1289591	leaf	6806506	2	0	0.0
Intestinimonas butyriciproducens	1297617	species	6600981	1	0	0.0
Pasteurella multocida subsp. multocida OH4807	1304873	leaf	2079121	1	1	0.0
Fusobacterium nucleatum subsp. vincentii ChDC F8	1307427	leaf	2038535	2	2	0.0
Fusobacterium nucleatum subsp. nucleatum ChDC F316	1307428	leaf	2227266	4	4	0.0
Fusobacterium hwasookii ChDC F206	1307443	leaf	2430523	3	3	0.0
Fusobacterium hwasookii ChDC F300	1307444	leaf	2527063	9	9	0.0
Tannerella forsythia 3313	1307832	leaf	3350939	5	4	0.0
Tannerella forsythia KS16	1307833	leaf	3393002	3	3	0.0
Ralstonia pseudosolanacearum	1310165	species	11622205	1	0	0.0
Lactobacillus rhamnosus LOCK900	1316933	leaf	2883376	1	1	0.0
Chryseobacterium gallinarum	1324352	species	4633632	3	3	0.0
Escherichia coli LY180	1335916	leaf	4835601	97	0	0.0
Tenacibaculum maritimum NCIMB 2154	1349785	leaf	3435971	1	0	0.0
Escherichia coli PCN061	1358422	leaf	4901825	7	1	0.0
Paracoccus aminophilus JCM 7686	1367847	leaf	4873118	2	1	0.0
Bacteroides ovatus V975	1379690	leaf	6475296	2	0	0.0
Lactobacillus fermentum 3872	1381124	leaf	2330492	35	25	0.0
Leisingera aquaemixtae	1396826	species	4380105	1	1	0.0
Ornithobacterium rhinotracheale ORT-UMN 88	1401325	leaf	2397867	3	2	0.0
Candidatus Endolissoclinum faulkneri L5	1401328	leaf	1518636	2	0	0.0
Porphyromonas gingivalis AJW4	1403336	leaf	2372492	1	0	0.0
Streptococcus equi subsp. zooepidemicus CY	1403449	leaf	2107382	2	2	0.0
Sinorhizobium americanum CCGM7	1408224	leaf	6853050	1	0	0.0
Clostridium botulinum CDC_1436	1408283	leaf	4365669	1	0	0.0
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon	1410384	leaf	960618	1	0	0.0
Mannheimia sp. USDA-ARS-USMARC-1261	1432056	species	2393449	2	2	0.0
Escherichia coli KLY	1435461	leaf	4718545	2	0	0.0
Gynuella sunshinyii YC6258	1445510	leaf	6475959	1	0	0.0
Escherichia coli O25:NM	1446707	leaf	5042926	1	0	0.0
Escherichia coli O6:H16	1446746	leaf	20278002	7	2	0.0
Streptococcus oralis subsp. dentisani	1458253	subspecies	1926555	1	0	0.0
Francisella sp. FSC1006	1547445	species	2015987	1	0	0.0
Ruthenibacterium lactatiformans	1550024	species	4419852	21	15	0.0
Streptomyces sp. CCM_MD2014	1561022	species	8274043	4	0	0.0
Ruminococcaceae bacterium CPB6	1572656	species	2069994	6	0	0.0
Aquitalea sp. USM4	1590041	species	4346160	2	0	0.0
Geminocystis sp. NIES-3708	1615909	species	4042078	1	0	0.0
Petrimonas mucosa	1642646	species	3717632	1	0	0.0
Proteiniphilum saccharofermentans	1642647	species	4414963	3	0	0.0
Eggerthellaceae	1643826	family	2819407	1	0	0.0
Janthinobacterium sp. 1_2014MBL_MicDiv	1644131	species	6453540	1	1	0.0
Absiella argi	1671597	species	2996298	10	6	0.0
Citrobacter sp. CRE-46	1703250	species	6081860	1	1	0.0
Capnocytophaga sp. oral taxon 323	1705617	species	2614527	3	3	0.0
Turicibacter sp. H121	1712675	species	2622031	1	1	0.0
Microbacterium sp. No. 7	1714373	species	4827965	3	0	0.0
Rhodococcus sp. H-CA8f	1727214	species	6497607	2	0	0.0
Aeromonas sp. ASNIH5	1758179	species	4783196	1	0	0.0
Acinetobacter sp. ACNIH2	1758189	species	4169274	1	1	0.0
Rhodothermaceae bacterium RA	1779382	species	4653222	1	0	0.0
Acinetobacter lactucae	1785128	species	3981712	1	1	0.0
Leptotrichia sp. oral taxon 847	1785996	species	2194935	2	2	0.0
Variovorax sp. PAMC 28711	1795631	species	4316152	1	1	0.0
Bacteroides caecimuris	1796613	species	4839927	2	2	0.0
Blautia sp. YL58	1796616	species	5128746	1	1	0.0
Shigella sp. PAMC 28760	1813821	species	4558287	20	0	7.1733e-16
Candidatus Nitrosocosmicus exaquare	1826872	species	2989777	1	0	0.0
Lachnoclostridium sp. YL32	1834196	species	7225339	7	7	0.0
Hungateiclostridiaceae bacterium KB18	1834198	species	3802844	7	7	0.0
Gordonia phage OneUp	1838074	leaf	93577	1	0	0.0
Dehalogenimonas formicexedens	1839801	species	2092789	4	4	0.0
Pelobacter sp. SFB93	1842532	species	3218469	1	1	0.0
Lactobacillus allii	1847728	species	2534178	1	1	0.0
Lachnospiraceae bacterium	1898203	species	6515634	1	0	0.0
Clostridiales bacterium	1898207	species	3376475	1	0	0.0
Pectobacterium parmentieri	1905730	species	5063892	1	0	0.0
Nonomuraea sp. ATCC 55076	1909395	species	13047416	3	0	0.0
Arcobacter canalis	1912871	species	2829476	2	1	0.0
Blautia sp. N6H1-15	1912897	species	3297975	1	1	0.0
Synechococcus lividus PCC 6715	1917166	leaf	2659739	2	2	0.0
Leclercia sp. LSNIH3	1920116	species	5389886	1	0	0.0
Delftia sp. HK171	1920191	species	6430384	1	0	0.0
Hubei picorna-like virus 65	1923148	species	8941	1	1	0.0
Wuhan spider virus 6	1923755	species	10647	3	3	0.0
Sphingobacterium sp. B29	1933220	species	6357185	2	1	0.0
Bartonella sp. WD16.2	1933904	species	1762996	2	1	0.0
Beijerinckiaceae bacterium	1978229	species	3326434	1	1	0.0
Vibrio sp. 2521-89	2014742	species	4123863	2	0	0.0
Streptococcus respiraculi	2021971	species	2067971	1	0	0.0
Parabacteroides sp. CT06	2025876	species	5372666	4	2	0.0
Aeromonas sp. CU5	2033033	species	4615599	2	2	0.0
Nostoc flagelliforme CCNUN1	2038116	leaf	10231233	1	0	0.0
Eubacterium maltosivorans	2041044	species	4337501	6	6	0.0
Escherichia coli O114:H49	2048775	leaf	5145656	2	1	0.0
Escherichia coli O128:H27	2048776	leaf	5130625	1	1	0.0
Escherichia coli O15:H11	2048777	leaf	5181145	5	3	0.0
Escherichia coli O25:H16	2048780	leaf	5078362	2	1	0.0
Escherichia coli O27:H7	2048781	leaf	4952219	1	0	0.0
Enterococcus sp. CR-Ec1	2057791	species	3889849	1	0	0.0
Enterococcus sp. FDAARGOS_375	2060307	species	3549293	1	0	0.0
Streptomyces sp. Go-475	2072505	species	8570609	1	0	0.0
Peptostreptococcaceae bacterium oral taxon 929	2081703	species	1646831	1	1	0.0
Pseudomonas sp. LH1G9	2083055	species	6548975	1	0	0.0
Christensenella sp. Marseille-P3954	2086585	species	2422126	1	0	0.0
Dysosmobacter welbionis	2093857	species	3576111	19	17	0.0
Olsenella sp. GAM18	2109685	species	2100540	1	1	0.0
Oscillibacter sp. PEA192	2109687	species	3320462	5	4	0.0
Clostridiales bacterium CCNA10	2109688	species	3558314	31	29	0.0
Lachnospiraceae bacterium Choco86	2109690	species	2785030	2	0	0.0
Lachnospiraceae bacterium GAM79	2109691	species	4078671	40	38	0.0
Melaminivora sp. SC2-9	2109913	species	3754020	1	0	0.0
Streptacidiphilus sp. DSM 106435	2126346	species	7090212	1	0	0.0
Bartonella sp. 'Tel Aviv'	2133959	species	2276164	1	1	0.0
Streptomyces sp. YIM 121038	2136401	species	11098444	1	0	0.0
Saccharospirillum mangrovi	2161747	species	3686911	1	1	0.0
Vibrio sp. dhg	2163016	species	5488599	3	0	0.0
Erythrobacter sp. YH-07	2182384	species	3372129	1	0	0.0
Bdellovibrio sp. NC01	2220073	species	3975853	1	1	0.0
Runella sp. SP2	2268026	species	7613819	1	1	0.0
Streptomyces sp. KPB2	2305221	species	8082236	4	0	0.0
Chryseolinea soli	2321403	species	8241389	2	2	0.0
Virgibacillus sp. Bac332	2419842	species	4627247	1	0	0.0
Blautia sp. SC05B48	2479767	species	3731576	11	11	0.0
Chryseobacterium sp. G0186	2487064	species	5038771	1	0	0.0
Xylanimicrobium sp. FW10M-9	2509457	species	3859980	3	0	0.0
Halieaceae bacterium IMCC3088	2518989	species	3095392	1	1	0.0
Bacteroides sp. A1C1	2528203	species	4502190	2	2	0.0
Citrobacter sp. SNU WT2	2562449	species	4946572	3	0	0.0
Streptococcus sp. 1643	2576376	species	1898954	1	1	0.0
Duncaniella sp. B8	2576606	species	3384950	1	1	0.0
Pedobacter sp. KBS0701	2578106	species	6334343	1	1	0.0
Micromonospora sp. HM134	2583243	species	7565212	1	0	0.0
Streptococcus sp. NCTC 11567	2583584	species	2147716	2	0	0.0
Elizabethkingia sp. JS20170427COW	2583851	species	2691279	1	0	0.0
Longibaculum sp. KGMB06250	2584943	species	2918948	8	8	0.0
Alistipes communis	2585118	species	6603476	43	39	0.0
Clostridium sp. SYSU GA15002T	2587161	species	3805212	1	1	0.0
Roseovarius sp. THAF8	2587846	species	4452662	1	0	0.0
Georgenia sp. Z443	2589797	species	4171640	3	0	0.0
Lachnospiraceae bacterium KGMB03038	2594789	species	3334474	1	1	0.0
Tepidiforma bonchosmolovskayae	2601677	species	2746948	1	0	0.0
Chitinophaga sp. XS-30	2604421	species	6183078	1	1	0.0
Escherichia coli O80:H26	2605620	leaf	5338095	4	0	0.0
Methylomonas sp. GJ1	2608981	species	4554005	1	1	0.0
Flintibacter sp. KGMB00164	2610895	species	2917795	8	7	0.0
Nitrincola sp. KXZD1103	2614693	species	4172991	1	1	0.0
Pelistega sp. NLN63	2652177	species	2326689	1	0	0.0
Muribaculaceae bacterium DSM 108610	2652307	species	3340670	14	13	0.0
Nonomuraea sp. WYY166	2656914	species	11273186	1	1	0.0
Paenibacillus sp. B01	2660554	species	5825233	6	6	0.0
Aeromicrobium sp. MF47	2662028	species	3682026	1	1	0.0
Alistipes sp. dk3624	2662363	species	3019767	1	1	0.0
Streptomyces sp. QMT-28	2662397	species	8880330	1	0	0.0
Fusobacterium pseudoperiodonticum	2663009	species	21472532	5	5	0.0
Salmonella sp. HNK130	2664291	species	4753000	298	0	1.48109e-13
Escherichia phage Mu	2681603	leaf	36717	5	0	0.209911
Prolixibacteraceae bacterium WC007	2681766	species	7811310	1	1	0.0
Streptomyces sp. T44	2686304	species	9735779	1	0	0.0
Salmonella sp. S13	2686305	species	5037272	13	1	6.24847e-18
Cellulophaga sp. L1A9	2686362	species	5072468	1	1	0.0
Pontibacter sp. BT326	2694929	species	4965849	1	1	0.0
Streptomyces sp. HM190	2695266	species	7762826	1	0	0.0
Mucilaginibacter sp. 14171R-50	2703789	species	4535041	2	0	0.0