MetaT Workflow - Read Counts Info File
This workflow outputs a tab separated read count file from BAM and GFF using SAMTOOLS(1):
samtools 1.15
Using htslib 1.15

Container: dongyingwu/rnaseqct@sha256:e7418cc7a5a58eb138c3b739608d2754a05fa3648b5881befbfbb0bb2e62fa95

(1) Danecek, P., Bonfield, J. K., Liddle, J., Marshall, J., Ohan, V., Pollard, M. O., Whitwham, A., Keane, T., McCarthy, S. A., Davies, R. M., & Li, H. (2021). Twelve years of samtools and bcftools. GigaScience, 10(2), giab008. https://doi.org/10.1093/gigascience/giab008